BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780636|ref|YP_003065049.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62] (207 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780636|ref|YP_003065049.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62] gi|254040313|gb|ACT57109.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/207 (100%), Positives = 207/207 (100%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ Sbjct: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK Sbjct: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA Sbjct: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 TSCCNFLMDRAELDLLGWENVDIFSHS Sbjct: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 >gi|315122172|ref|YP_004062661.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495574|gb|ADR52173.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 209 Score = 353 bits (907), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 166/206 (80%), Positives = 183/206 (88%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MTTIRVH GDIP EC ARY IAVDTETLGL+PRRDRLC+VQLSPGDGT DIIRIAA Q Sbjct: 1 MTTIRVHNGDIPTECIARYTGPIAVDTETLGLIPRRDRLCVVQLSPGDGTADIIRIAAEQ 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 KNAPNLV ML +E +EKIFHY RFDIAVLFYTFGVRV+P+FCTKIASRLTRTY ++HGLK Sbjct: 61 KNAPNLVTMLANETQEKIFHYARFDIAVLFYTFGVRVKPIFCTKIASRLTRTYIDRHGLK 120 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DNL+ELLG++ISK QQ SDWS DDLS EQLQYAASDVVHLHALR +F KLQ LGRSD+A Sbjct: 121 DNLRELLGVDISKKQQLSDWSEDDLSHEQLQYAASDVVHLHALREKFIAKLQSLGRSDVA 180 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 ++C NFLM RAELDLLGW+N+DIFSH Sbjct: 181 SACFNFLMSRAELDLLGWDNIDIFSH 206 >gi|332716830|ref|YP_004444296.1| Ribonuclease D [Agrobacterium sp. H13-3] gi|325063515|gb|ADY67205.1| Ribonuclease D [Agrobacterium sp. H13-3] Length = 208 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 150/205 (73%), Positives = 172/205 (83%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI A AARY+ AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 4 TIRYHEGDISAADAARYLGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D R+KIFHYGRFDIAVLF+TFGV PVFCTKIASRLTRTYT++HGLKDN Sbjct: 64 APNLTHMLADPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLTRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKE+L ++ISKAQQSSDW+A+ LS QL+YAASDV+HLHALR + T +L R GR D A + Sbjct: 124 LKEMLEVDISKAQQSSDWAAEKLSPAQLEYAASDVLHLHALRDKLTHRLVRDGRLDHADA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGW+ DIF+HS Sbjct: 184 CFAFLPTRAKLDLLGWDETDIFAHS 208 >gi|222147114|ref|YP_002548071.1| ribonuclease D [Agrobacterium vitis S4] gi|221734104|gb|ACM35067.1| ribonuclease D [Agrobacterium vitis S4] Length = 208 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 147/206 (71%), Positives = 173/206 (83%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +TIR HEGDI +E AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIA GQ+ Sbjct: 3 STIRYHEGDISSEDAARYTRAIAIDTETLGLIPRRDRLCVVQLSPGDGTADVIRIAPGQR 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D REKIFHYGRFDIAVLF+TFGV PVFCTKIASRL+RTYT++HGLKD Sbjct: 63 QAPNLTALLEDPTREKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L +++SKAQQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR D AT Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLVRDGRMDHAT 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFEFLPTRAKLDLLGWEETDIFAHS 208 >gi|209551599|ref|YP_002283516.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537355|gb|ACI57290.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 208 Score = 311 bits (796), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 149/205 (72%), Positives = 172/205 (83%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI A AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIA+GQK Sbjct: 4 TIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIASGQKE 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKDN Sbjct: 64 APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTNPVFCTKIASRLIRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKE+L ++ISKAQQSSDW+A+ LS QL+YAASDV++LHALR + TE+L R GR D AT+ Sbjct: 124 LKEMLDVDISKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTERLLRDGRFDHATA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGWE DIF+HS Sbjct: 184 CFAFLPTRAKLDLLGWEEADIFAHS 208 >gi|222084303|ref|YP_002542832.1| RNAse D protein [Agrobacterium radiobacter K84] gi|221721751|gb|ACM24907.1| RNAse D protein [Agrobacterium radiobacter K84] Length = 208 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 149/205 (72%), Positives = 170/205 (82%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI A AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIA+GQ Sbjct: 4 TIRYHEGDISAADAARYTGAIAIDTETLGLIPRRDRLCVVQLSPGDGTADIIRIASGQSQ 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV ML D R+KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKDN Sbjct: 64 APNLVAMLADTTRQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKELL ++ISKAQQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR + A + Sbjct: 124 LKELLEVDISKAQQSSDWAAEKLSPAQLEYAASDVLYLHALRDKLTARLVRDGRMEHAEA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGWE DIF+HS Sbjct: 184 CFAFLPTRAKLDLLGWEEADIFAHS 208 >gi|86355756|ref|YP_467648.1| RNAse D protein [Rhizobium etli CFN 42] gi|86279858|gb|ABC88921.1| RNAse D protein [Rhizobium etli CFN 42] Length = 208 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 149/205 (72%), Positives = 171/205 (83%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI A AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK Sbjct: 4 TIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQKA 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKDN Sbjct: 64 APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTNPVFCTKIASRLCRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKE+L +++SKAQQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR D AT+ Sbjct: 124 LKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHATA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGWE DIF+HS Sbjct: 184 CFAFLPTRAKLDLLGWEEADIFAHS 208 >gi|195970213|ref|NP_384368.2| hypothetical protein SMc00342 [Sinorhizobium meliloti 1021] gi|307306427|ref|ZP_07586171.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C] gi|307319314|ref|ZP_07598743.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83] gi|187904130|emb|CAC41699.2| Probable ribonuclease D [Sinorhizobium meliloti 1021] gi|306895150|gb|EFN25907.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83] gi|306902269|gb|EFN32866.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C] Length = 208 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 149/205 (72%), Positives = 170/205 (82%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI AARY AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRI+AGQK Sbjct: 4 TIRFHEGDISETDAARYTGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRISAGQKQ 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV ML D R+KIFH+GRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKDN Sbjct: 64 APNLVSMLADPTRQKIFHFGRFDIAVLFHTFGVTASPVFCTKIASRLARTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKELL I+ISK QQSSDW+AD LS QL+YAASDV+HLHALR + T +L R GR +LA + Sbjct: 124 LKELLDIDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLLRDGRMELAEA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDLLGWE DIF+HS Sbjct: 184 CFSFLPTRAKLDLLGWEEADIFAHS 208 >gi|218508865|ref|ZP_03506743.1| ribonuclease III protein [Rhizobium etli Brasil 5] gi|327190020|gb|EGE57137.1| ribonuclease III protein [Rhizobium etli CNPAF512] Length = 208 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 147/205 (71%), Positives = 171/205 (83%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI A AARY A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 4 TIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL+RTYT++HGLKDN Sbjct: 64 APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKE+L ++ISK QQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR D AT+ Sbjct: 124 LKEMLDVDISKTQQSSDWAAETLSQAQLEYAASDVLYLHALRDKLTARLIRDGRFDHATA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGWE DIF+HS Sbjct: 184 CFAFLPTRAKLDLLGWEEADIFAHS 208 >gi|218661189|ref|ZP_03517119.1| ribonuclease III protein [Rhizobium etli IE4771] Length = 208 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 148/205 (72%), Positives = 170/205 (82%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI A AARY A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 4 TIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKDN Sbjct: 64 APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKE+L I+ISK QQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR D AT+ Sbjct: 124 LKEMLDIDISKTQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHATA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGWE DIF+HS Sbjct: 184 CFEFLPTRAKLDLLGWEEADIFAHS 208 >gi|116249870|ref|YP_765708.1| ribonuclease [Rhizobium leguminosarum bv. viciae 3841] gi|115254518|emb|CAK05592.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 208 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 148/205 (72%), Positives = 170/205 (82%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI A ARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK Sbjct: 4 TIRYHEGDISAADVARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQKE 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D +KIFHYGRFDIAVLF+TF V PVFCTKIASRL RTYT++HGLKDN Sbjct: 64 APNLVALLEDPTHQKIFHYGRFDIAVLFHTFSVTTTPVFCTKIASRLIRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKE+L +++SKAQQSSDW+A+ LS QL+YAASDV++LHALR + TE+L R GR D AT+ Sbjct: 124 LKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIRDGRYDHATA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGWE DIF+HS Sbjct: 184 CFEFLPTRAKLDLLGWEEADIFAHS 208 >gi|150398650|ref|YP_001329117.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419] gi|150030165|gb|ABR62282.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419] Length = 208 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 149/205 (72%), Positives = 170/205 (82%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI AARY AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRIAAGQK Sbjct: 4 TIRFHEGDISEADAARYRGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRIAAGQKQ 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV ML D R+KIFH+GRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKDN Sbjct: 64 APNLVAMLSDPARQKIFHFGRFDIAVLFHTFGVTASPVFCTKIASRLARTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKELL ++ISK QQSSDW+AD LS QL+YAASDV+HLHALR + T +L R GR +LA + Sbjct: 124 LKELLDVDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLLRDGRMELAEA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDLLGWE DIF+HS Sbjct: 184 CFSFLPTRAKLDLLGWEETDIFAHS 208 >gi|241207041|ref|YP_002978137.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860931|gb|ACS58598.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 208 Score = 308 bits (788), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 149/205 (72%), Positives = 171/205 (83%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI A AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK Sbjct: 4 TIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQKE 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 A NLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKDN Sbjct: 64 ARNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTATPVFCTKIASRLIRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKE+L +++SKAQQSSDW+A+ LS QL+YAASDV++LHALR + TE+L R GR D AT+ Sbjct: 124 LKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIRDGRYDHATA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGWE DIF+HS Sbjct: 184 CFEFLPTRAKLDLLGWEEADIFAHS 208 >gi|190889732|ref|YP_001976274.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|190695011|gb|ACE89096.1| ribonuclease III protein [Rhizobium etli CIAT 652] Length = 208 Score = 308 bits (788), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 147/205 (71%), Positives = 170/205 (82%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI A AARY A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 4 TIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL+RTYT++HGLKDN Sbjct: 64 APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKE+L ++ISK QQSSDW A+ LS QL+YAASDV++LHALR + T +L R GR D AT+ Sbjct: 124 LKEMLDVDISKTQQSSDWGAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHATA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGWE DIF+HS Sbjct: 184 CFAFLPTRAKLDLLGWEEADIFAHS 208 >gi|218670593|ref|ZP_03520264.1| ribonuclease III protein [Rhizobium etli GR56] Length = 208 Score = 306 bits (785), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 147/205 (71%), Positives = 169/205 (82%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI AARY A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 4 TIRYHEGDISTADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKDN Sbjct: 64 APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKE+L I+ISK QQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR D AT+ Sbjct: 124 LKEMLDIDISKTQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHATA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGWE DIF+HS Sbjct: 184 CFEFLPTRAKLDLLGWEEADIFAHS 208 >gi|15890866|ref|NP_356538.1| ribonuclease D [Agrobacterium tumefaciens str. C58] gi|15159163|gb|AAK89323.1| ribonuclease D [Agrobacterium tumefaciens str. C58] Length = 208 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 148/205 (72%), Positives = 171/205 (83%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI AE AARY AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRIAAGQK Sbjct: 4 TIRYHEGDISAEDAARYKGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRIAAGQKQ 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV ML D R+KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKDN Sbjct: 64 APNLVHMLADPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKE+L ++ISKAQQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR + A + Sbjct: 124 LKEMLEVDISKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRIEHADA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGW+ DIF+HS Sbjct: 184 CFAFLPTRAKLDLLGWDETDIFAHS 208 >gi|227824096|ref|YP_002828069.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234] gi|227343098|gb|ACP27316.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234] Length = 208 Score = 297 bits (761), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 151/205 (73%), Positives = 171/205 (83%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR HEGDI A AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 4 TIRFHEGDISAADAARYAGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV ML D R+KIFH+GRFDIAVLF+TFGV PVFCTKIASRLTRTYT++HGLKDN Sbjct: 64 APNLVRMLADPARQKIFHFGRFDIAVLFHTFGVTSTPVFCTKIASRLTRTYTDRHGLKDN 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LKELL ++ISK QQSSDW+AD LS QL+YAASDV+HLHALR + T +L R GR + A + Sbjct: 124 LKELLDVDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLIRDGRMEHADA 183 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGWE DIF+HS Sbjct: 184 CFAFLPTRAKLDLLGWEETDIFAHS 208 >gi|163757673|ref|ZP_02164762.1| putative ribonuclease [Hoeflea phototrophica DFL-43] gi|162285175|gb|EDQ35457.1| putative ribonuclease [Hoeflea phototrophica DFL-43] Length = 207 Score = 290 bits (742), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 136/207 (65%), Positives = 163/207 (78%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IR H+GDI + ARY IAVDTETLGL+PRRDRLC+VQLSPGDG+ D+I+IA GQ Sbjct: 1 MADIRAHKGDISDQAMARYTGDIAVDTETLGLVPRRDRLCVVQLSPGDGSADVIQIAKGQ 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K APNLV +L D KR K+FHYGRFDIAVL+ FGV PVFCTKIASRLTRTYT++HGLK Sbjct: 61 KRAPNLVALLTDRKRRKLFHYGRFDIAVLYNAFGVTTEPVFCTKIASRLTRTYTDRHGLK 120 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D +ELL +++SK QQSSDW+A+ L+ QL+YAASDV+HLHAL + TE+LQR R A Sbjct: 121 DVTRELLEVDLSKQQQSSDWAAETLTPAQLEYAASDVLHLHALTAKLTERLQRDDREAHA 180 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDL+GWE DIF+HS Sbjct: 181 KACFEFLPTRAKLDLMGWEETDIFAHS 207 >gi|75674370|ref|YP_316791.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255] gi|74419240|gb|ABA03439.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255] Length = 206 Score = 265 bits (676), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 125/205 (60%), Positives = 155/205 (75%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P + ARY + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ++ Sbjct: 2 TIRLHRGDLPHQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQRD 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL+ +L D KIFH+ RFD+A L+ FGV RPV+CTKIASRL RTYT++HGLKD Sbjct: 62 APNLIKLLKDPAIVKIFHFARFDLAALYNAFGVMPRPVYCTKIASRLIRTYTDRHGLKDL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL I++SK QQSSDW + LSD QL YAASDV+HLHALR + L R RS LA + Sbjct: 122 VRELLSIDLSKQQQSSDWGSPTLSDAQLAYAASDVLHLHALRDKLEATLAREDRSALAQA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GWE DIF+HS Sbjct: 182 CFEFLPSRAMLDLAGWETEDIFAHS 206 >gi|110636308|ref|YP_676516.1| 3'-5' exonuclease [Mesorhizobium sp. BNC1] gi|110287292|gb|ABG65351.1| 3'-5' exonuclease [Chelativorans sp. BNC1] Length = 205 Score = 263 bits (673), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 128/206 (62%), Positives = 163/206 (79%), Gaps = 3/206 (1%) Query: 3 TIRVHEGDIPAECAARY-VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR H+ D+P +RY VDA+A+DTETLGL P RDRLC+VQLSPGDGT D+++IAAGQ+ Sbjct: 2 TIRFHQYDLPD--LSRYDVDAVAIDTETLGLNPHRDRLCVVQLSPGDGTADVVQIAAGQR 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV +L + + K+FHY RFDIAVL+++FGV PVFCTKIASRLTRTYT++HGLKD Sbjct: 60 RAPNLVALLRNRRITKLFHYARFDIAVLYHSFGVMPDPVFCTKIASRLTRTYTDRHGLKD 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ELL +N+SKAQQSSDW+A+ L+ EQL+YAASDV++LH L ++L R GR+ A Sbjct: 120 ICYELLQVNLSKAQQSSDWAAEQLTPEQLEYAASDVLYLHRLADVLQQRLMRDGRAREAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDL+GW+ DIF+HS Sbjct: 180 ACFKFLPTRAKLDLMGWDEQDIFAHS 205 >gi|118589455|ref|ZP_01546861.1| 3'-5' exonuclease [Stappia aggregata IAM 12614] gi|118438155|gb|EAV44790.1| 3'-5' exonuclease [Stappia aggregata IAM 12614] Length = 206 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 121/205 (59%), Positives = 156/205 (76%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+GD+P A +A+AVD+ETLGL P RDRLC+VQLSPGDG+ D+++IA GQ Sbjct: 2 TIRYHKGDLPDLKAYETANAVAVDSETLGLNPHRDRLCVVQLSPGDGSADVVQIARGQSE 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ++ D + KIFH+ RFD+AVL + +RV PV+CTKIAS+L RTYT++HGLKD Sbjct: 62 APNLAALMTDTSKPKIFHFARFDVAVLQHYLNIRVSPVWCTKIASKLVRTYTDRHGLKDI 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG+ +SK QQSSDW+A+ LSD QL YAASDV+HLHAL+ + L+R R+ +A + Sbjct: 122 TRELLGVELSKQQQSSDWAAETLSDAQLAYAASDVLHLHALKERLEMMLEREERTHIAEA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RAELDL GWE DIF+HS Sbjct: 182 CFDFLPTRAELDLKGWEENDIFAHS 206 >gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1] Length = 206 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/207 (61%), Positives = 159/207 (76%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT IRVH+GD+P +VDAIAVDTETLGL P RDRLC+VQLS GDGT DII+IA GQ Sbjct: 1 MTEIRVHQGDLP-NLDNYHVDAIAVDTETLGLQPYRDRLCVVQLSSGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNLV +L D+ KIFH+GRFD+A+L +TFG+ VFCTKIAS+LTRTYT++HGLK Sbjct: 60 NSAPNLVKLLEDKAITKIFHFGRFDLAILAHTFGIMPDVVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+ + LS Q++YAASDV++LH L+ F +L+R R ++A Sbjct: 120 EICSELLNVNISKQQQSSDWATETLSRAQIEYAASDVLYLHRLKSVFETRLKREERENVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW DIF+HS Sbjct: 180 KACFQFLPMRAKLDLLGWTETDIFAHS 206 >gi|328545553|ref|YP_004305662.1| 3'-5' exonuclease [polymorphum gilvum SL003B-26A1] gi|326415294|gb|ADZ72357.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1] Length = 206 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 122/205 (59%), Positives = 155/205 (75%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+ D+P A A+AVDTETLGL P RDRLC+VQLSPGDGT D+++IA GQ+ Sbjct: 2 TIRHHKTDLPDLSAYDAAQAVAVDTETLGLNPHRDRLCVVQLSPGDGTADVVQIARGQRA 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + KIFH+ RFD+AVL + G+ V PV+CTKIAS+L RTYT++HGLKD Sbjct: 62 APNLARLLTDPAKMKIFHFARFDLAVLRHNLGIEVAPVWCTKIASKLVRTYTDRHGLKDI 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG+++SK QQSSDW+A+ L+D QL YAASDV+HLHALR + L+R R+ LA + Sbjct: 122 TRELLGVDLSKQQQSSDWAAETLTDAQLAYAASDVLHLHALREKLAAMLEREERTALARA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL+GWE DIF+H+ Sbjct: 182 CYEFLPTRAALDLMGWEEQDIFAHT 206 >gi|163867544|ref|YP_001608743.1| hypothetical protein Btr_0277 [Bartonella tribocorum CIP 105476] gi|161017190|emb|CAK00748.1| Ribonuclease D [Bartonella tribocorum CIP 105476] Length = 206 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 130/207 (62%), Positives = 159/207 (76%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P DAIA+DTETLGL P RDRLC+VQ+SPGDGT DII+IA GQ Sbjct: 1 MAEIRVHQGDLP-NLDNYKTDAIAIDTETLGLQPHRDRLCVVQISPGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 KNAPNLV +L D KIFH+GRFD+A+L +TFGV VFCTKIAS+LTRTYT++HGLK Sbjct: 60 KNAPNLVKLLEDNAVTKIFHFGRFDLAILAHTFGVMPEAVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+A+ LS Q++YAASDV++LH L+ F E+L+R R +A Sbjct: 120 EICNELLNVNISKQQQSSDWAAETLSQAQIEYAASDVLYLHRLKAIFEERLRREERESVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW VDIF+HS Sbjct: 180 KACFQFLPMRAKLDLLGWSEVDIFAHS 206 >gi|319781433|ref|YP_004140909.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167321|gb|ADV10859.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 206 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 126/207 (60%), Positives = 158/207 (76%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IR H+ D+P + + V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ Sbjct: 1 MADIRFHKNDLP-DLSHYNVGAVAIDTETLGLNPHRDRLCVVQISPGDGSADVIQIAPGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K APNLV +L + K+FHYGRFD+AVL+ FGV PVFCTKIASRLTRTYT++HGLK Sbjct: 60 KKAPNLVSLLRNRGVTKLFHYGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR +L R GR+ A Sbjct: 120 DICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLARDGRTKEA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDL+GW+ DIF+HS Sbjct: 180 DACFRFLPTRAKLDLMGWDEEDIFAHS 206 >gi|254505241|ref|ZP_05117392.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11] gi|222441312|gb|EEE47991.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11] Length = 223 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 120/207 (57%), Positives = 155/207 (74%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + TIR H+GD+P A A+AVD+ETLGL P RDRLC+VQLSPGDG+ D+++IA GQ Sbjct: 17 VMTIRYHKGDLPDLSAYETASAVAVDSETLGLNPHRDRLCVVQLSPGDGSADVVQIARGQ 76 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 APNL + D + KIFH+ RFD+AVL + G+ V PV+CTKIAS+L RTYT++HGLK Sbjct: 77 TEAPNLAALFTDAAKPKIFHFARFDVAVLRHYLGIHVTPVWCTKIASKLVRTYTDRHGLK 136 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D +ELLG+ +SK QQSSDW+A+ LSD QL YAASDV+HLH L+ + L+R R+++A Sbjct: 137 DITRELLGVELSKQQQSSDWAAETLSDAQLAYAASDVLHLHDLKAKLEMMLEREERTNIA 196 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RAELDL GWE DIF+HS Sbjct: 197 EACFSFLPVRAELDLKGWEENDIFAHS 223 >gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5] gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5] Length = 204 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 153/205 (74%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY ++A+DTETLGL P RDRLC+VQLS GDGT D+++I AG + Sbjct: 2 TIRLHRGDLPD--LSRYTHSVAIDTETLGLNPHRDRLCVVQLSNGDGTADVVQIPAGHTD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D K+FH+ RFDIAVL + FGV +P++CTKIAS+L RTYT++HGLKD Sbjct: 60 APNLKKLLADPMVTKLFHFARFDIAVLEHAFGVMTQPIYCTKIASKLVRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLG+ ISK QQSSDW A+ LS+ QL YAASDV+HLHALR + L R R DLA S Sbjct: 120 VRELLGVEISKQQQSSDWGAEKLSEAQLTYAASDVLHLHALREKLDTMLARENRMDLAKS 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW+ DIF+HS Sbjct: 180 CFEFLPTRARLDLQGWDETDIFAHS 204 >gi|239830972|ref|ZP_04679301.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301] gi|239823239|gb|EEQ94807.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301] Length = 205 Score = 258 bits (658), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 124/205 (60%), Positives = 157/205 (76%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+ D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHKNDLP-NLDHYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL +TFG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAHTFGTMPQPVFCTKIASKLTRTYTDRHGLKEL 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CNELLDVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRLERDGRAKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWPEDDIFAHS 205 >gi|13472866|ref|NP_104433.1| hypothetical protein mll3296 [Mesorhizobium loti MAFF303099] gi|14023613|dbj|BAB50219.1| mll3296 [Mesorhizobium loti MAFF303099] Length = 206 Score = 257 bits (657), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 125/207 (60%), Positives = 158/207 (76%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IR H+ D+P + + V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ Sbjct: 1 MADIRFHKHDLP-DLSHYNVGAVAIDTETLGLNPHRDRLCLVQISPGDGSADVIQIAPGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K APNLV +L + K+FH+GRFD+AVL+ FGV PVFCTKIASRLTRTYT++HGLK Sbjct: 60 KKAPNLVSLLRNRSVTKLFHFGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR +L R GR+ A Sbjct: 120 DICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLAREGRTKEA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDL+GW+ DIF+HS Sbjct: 180 DACFRFLPTRAKLDLMGWDEEDIFAHS 206 >gi|17988111|ref|NP_540745.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M] gi|62289101|ref|YP_220894.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941] gi|82699039|ref|YP_413613.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308] gi|148559185|ref|YP_001258158.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840] gi|189023376|ref|YP_001934144.1| 3'-5' exonuclease [Brucella abortus S19] gi|225626663|ref|ZP_03784702.1| ribonuclease D [Brucella ceti str. Cudo] gi|225851660|ref|YP_002731893.1| hypothetical protein BMEA_A0127 [Brucella melitensis ATCC 23457] gi|237814593|ref|ZP_04593591.1| ribonuclease D [Brucella abortus str. 2308 A] gi|254690430|ref|ZP_05153684.1| hypothetical protein Babob68_09714 [Brucella abortus bv. 6 str. 870] gi|254694918|ref|ZP_05156746.1| hypothetical protein Babob3T_09702 [Brucella abortus bv. 3 str. Tulya] gi|254696124|ref|ZP_05157952.1| hypothetical protein Babob28_00020 [Brucella abortus bv. 2 str. 86/8/59] gi|254700933|ref|ZP_05162761.1| hypothetical protein Bsuib55_08749 [Brucella suis bv. 5 str. 513] gi|254707182|ref|ZP_05169010.1| hypothetical protein BpinM_09468 [Brucella pinnipedialis M163/99/10] gi|254709273|ref|ZP_05171084.1| hypothetical protein BpinB_03206 [Brucella pinnipedialis B2/94] gi|254713304|ref|ZP_05175115.1| hypothetical protein BcetM6_08117 [Brucella ceti M644/93/1] gi|254716342|ref|ZP_05178153.1| hypothetical protein BcetM_07890 [Brucella ceti M13/05/1] gi|254731461|ref|ZP_05190039.1| hypothetical protein Babob42_09744 [Brucella abortus bv. 4 str. 292] gi|256030796|ref|ZP_05444410.1| hypothetical protein BpinM2_09123 [Brucella pinnipedialis M292/94/1] gi|256045912|ref|ZP_05448786.1| hypothetical protein Bmelb1R_15494 [Brucella melitensis bv. 1 str. Rev.1] gi|256060264|ref|ZP_05450439.1| hypothetical protein Bneo5_07870 [Brucella neotomae 5K33] gi|256112626|ref|ZP_05453547.1| hypothetical protein Bmelb3E_08085 [Brucella melitensis bv. 3 str. Ether] gi|256158817|ref|ZP_05456678.1| hypothetical protein BcetM4_08038 [Brucella ceti M490/95/1] gi|256254202|ref|ZP_05459738.1| hypothetical protein BcetB_07895 [Brucella ceti B1/94] gi|256258682|ref|ZP_05464218.1| hypothetical protein Babob9C_15316 [Brucella abortus bv. 9 str. C68] gi|256264829|ref|ZP_05467361.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|256368584|ref|YP_003106090.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915] gi|260169700|ref|ZP_05756511.1| 3'-5' exonuclease family protein [Brucella sp. F5/99] gi|260546398|ref|ZP_05822138.1| 3'-5' exonuclease [Brucella abortus NCTC 8038] gi|260563197|ref|ZP_05833683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260755977|ref|ZP_05868325.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870] gi|260759201|ref|ZP_05871549.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292] gi|260760489|ref|ZP_05872835.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59] gi|260884998|ref|ZP_05896612.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68] gi|261215252|ref|ZP_05929533.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya] gi|261218123|ref|ZP_05932404.1| 3'-5' exonuclease [Brucella ceti M13/05/1] gi|261221350|ref|ZP_05935631.1| 3'-5' exonuclease [Brucella ceti B1/94] gi|261314663|ref|ZP_05953860.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10] gi|261316779|ref|ZP_05955976.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94] gi|261321030|ref|ZP_05960227.1| 3'-5' exonuclease [Brucella ceti M644/93/1] gi|261324237|ref|ZP_05963434.1| 3'-5' exonuclease [Brucella neotomae 5K33] gi|261751448|ref|ZP_05995157.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513] gi|261759236|ref|ZP_06002945.1| 3'-5' exonuclease [Brucella sp. F5/99] gi|265987850|ref|ZP_06100407.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1] gi|265992324|ref|ZP_06104881.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1] gi|265994066|ref|ZP_06106623.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether] gi|265997310|ref|ZP_06109867.1| 3'-5' exonuclease [Brucella ceti M490/95/1] gi|294851524|ref|ZP_06792197.1| ribonuclease D [Brucella sp. NVSL 07-0026] gi|297247517|ref|ZP_06931235.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196] gi|306842591|ref|ZP_07475240.1| 3'-5' exonuclease [Brucella sp. BO2] gi|17983864|gb|AAL53009.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M] gi|62195233|gb|AAX73533.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941] gi|82615140|emb|CAJ10073.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308] gi|148370442|gb|ABQ60421.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840] gi|189018948|gb|ACD71670.1| 3'-5' exonuclease [Brucella abortus S19] gi|225618320|gb|EEH15363.1| ribonuclease D [Brucella ceti str. Cudo] gi|225640025|gb|ACN99938.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|237789430|gb|EEP63640.1| ribonuclease D [Brucella abortus str. 2308 A] gi|255998742|gb|ACU47141.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915] gi|260096505|gb|EEW80381.1| 3'-5' exonuclease [Brucella abortus NCTC 8038] gi|260153213|gb|EEW88305.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260669519|gb|EEX56459.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292] gi|260670924|gb|EEX57745.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59] gi|260676085|gb|EEX62906.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870] gi|260874526|gb|EEX81595.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68] gi|260916859|gb|EEX83720.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya] gi|260919934|gb|EEX86587.1| 3'-5' exonuclease [Brucella ceti B1/94] gi|260923212|gb|EEX89780.1| 3'-5' exonuclease [Brucella ceti M13/05/1] gi|261293720|gb|EEX97216.1| 3'-5' exonuclease [Brucella ceti M644/93/1] gi|261296002|gb|EEX99498.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94] gi|261300217|gb|EEY03714.1| 3'-5' exonuclease [Brucella neotomae 5K33] gi|261303689|gb|EEY07186.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10] gi|261739220|gb|EEY27216.1| 3'-5' exonuclease [Brucella sp. F5/99] gi|261741201|gb|EEY29127.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513] gi|262551778|gb|EEZ07768.1| 3'-5' exonuclease [Brucella ceti M490/95/1] gi|262765047|gb|EEZ10968.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether] gi|263003390|gb|EEZ15683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1] gi|263095285|gb|EEZ18912.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|264660047|gb|EEZ30308.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1] gi|294820113|gb|EFG37112.1| ribonuclease D [Brucella sp. NVSL 07-0026] gi|297174686|gb|EFH34033.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196] gi|306287236|gb|EFM58724.1| 3'-5' exonuclease [Brucella sp. BO2] gi|326408140|gb|ADZ65205.1| 3'-5' exonuclease [Brucella melitensis M28] gi|326537851|gb|ADZ86066.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 205 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL + FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205 >gi|158425553|ref|YP_001526845.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571] gi|158332442|dbj|BAF89927.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571] Length = 206 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 126/207 (60%), Positives = 155/207 (74%), Gaps = 4/207 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-- 60 TIR+H GD+P V +A+DTETLGL P RDRLC+VQLS GDGT D+++I AG Sbjct: 2 TIRLHRGDLPDSFQPAPV--VAIDTETLGLKPHRDRLCVVQLSNGDGTADVVQIPAGATA 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 ++APNLV ML D K+FH+GRFDIAVL +TFGV PVFCTKIASRLTRTYT++HGLK Sbjct: 60 ESAPNLVRMLADPNVVKLFHFGRFDIAVLLHTFGVTTAPVFCTKIASRLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D ++ELLG+++SK QQSSDW+A +L+D QL YAASDV+HLHA + + L R GR+ LA Sbjct: 120 DLVRELLGVDLSKQQQSSDWAASELTDAQLAYAASDVLHLHACKEKLEAMLARDGRTALA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW + DIF+HS Sbjct: 180 AECFKFLPARAALDLAGWPDEDIFAHS 206 >gi|90420956|ref|ZP_01228860.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1] gi|90334734|gb|EAS48510.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1] Length = 205 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 119/205 (58%), Positives = 157/205 (76%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIRVH+GD+P +RY +A+DTETLGL RRDRLC+VQLSPGDGT D+++IA GQ Sbjct: 2 TIRVHKGDLPD--ISRYTGPVAIDTETLGLDTRRDRLCVVQLSPGDGTADVVQIAKGQSE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APN+ +L D + KIFHY RFD+A L++ FGV +FCTKIASRLTRTYT++HGLKD Sbjct: 60 APNITALLKDPAKTKIFHYARFDVAALYHAFGVMTDGIFCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +E++G++ISK QQSSDW+A+ LS Q++YAASDV++LH + ++L+R R +LA + Sbjct: 120 AREMVGVDISKQQQSSDWAAETLSQAQVEYAASDVLYLHDIMGGLYKRLEREDRMELAKA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDL GW++ DIFSHS Sbjct: 180 CFTFLPTRAKLDLAGWDDEDIFSHS 204 >gi|260460457|ref|ZP_05808708.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075] gi|259033562|gb|EEW34822.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075] Length = 206 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 126/207 (60%), Positives = 157/207 (75%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IR H+ D+P + V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ Sbjct: 1 MADIRFHKHDLP-DLTHYNVGAVAIDTETLGLNPHRDRLCVVQISPGDGSADVIQIAPGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K APNLV +L + K+FHYGRFD+AVL+ FGV PVFCTKIASRLTRTYT++HGLK Sbjct: 60 KKAPNLVSLLRNRGITKLFHYGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR + +L R GR+ A Sbjct: 120 DICFELLGVGLSKAQQSSDWAAEILSPEQLEYAASDVLYLHRLRDVLSGRLARDGRTKEA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDL+GW DIF+HS Sbjct: 180 DACFRFLPTRAKLDLMGWGEEDIFAHS 206 >gi|306844394|ref|ZP_07476984.1| 3'-5' exonuclease [Brucella sp. BO1] gi|306275207|gb|EFM56957.1| 3'-5' exonuclease [Brucella sp. BO1] Length = 205 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIDAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL + FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205 >gi|39933126|ref|NP_945402.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009] gi|39652751|emb|CAE25490.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009] Length = 204 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 124/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY ++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 2 TIRLHRGDLPD--LSRYTHSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGATD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L+ TFGV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKKLLGDPAVVKIFHFARFDLAALYKTFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLGI++SK QQSSDW AD LSD QL YAASDV+HLHALR + L R R+DLA + Sbjct: 120 VRELLGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDRLDTMLARENRTDLAAA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW DIF+HS Sbjct: 180 CFGFLPVRARLDLDGWSEEDIFAHS 204 >gi|153007480|ref|YP_001368695.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188] gi|151559368|gb|ABS12866.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188] Length = 205 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+ D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHKNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAQAFGTMPQPVFCTKIASKLTRTYTDRHGLKEL 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CNELLDVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRLERDGRAKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWPEDDIFAHS 205 >gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1] gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1] Length = 204 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY +++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 2 TIRLHRGDLPD--LSRYTNSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGATD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L+ FGV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKKLLGDPAVVKIFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLGI++SK QQSSDW AD LSD QL YAASDV+HLHALR + L R R+DLA + Sbjct: 120 VRELLGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDKLDTMLARENRTDLAAA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW DIF+HS Sbjct: 180 CFGFLPIRARLDLDGWSEEDIFAHS 204 >gi|316931442|ref|YP_004106424.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1] gi|315599156|gb|ADU41691.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1] Length = 211 Score = 254 bits (650), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY ++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 9 TIRLHRGDLPD--LSRYTHSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPLGATD 66 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L+ FGV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 67 APNLKKLLGDPAVVKIFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 126 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLGI++SK QQSSDW A+ LSD QL YAASDV+HLHALR + L R GR+DLA + Sbjct: 127 VRELLGIDLSKQQQSSDWGAESLSDAQLAYAASDVLHLHALRDKLDTMLAREGRTDLAAA 186 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW DIF+HS Sbjct: 187 CFGFLPVRARLDLDGWSEEDIFAHS 211 >gi|319406582|emb|CBI80224.1| Ribonuclease D [Bartonella sp. 1-1C] Length = 206 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 129/206 (62%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P VD+IA+DTETLGL P RDRLC+VQLSPGDGT DII+IA GQ Sbjct: 1 MAEIRVHQGDLP-NLDNYCVDSIAIDTETLGLQPHRDRLCVVQLSPGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNLV +L D+ KIFH+GRFD+A+L +TFGV VFCTK+AS+LTRTYT++HGLK Sbjct: 60 NSAPNLVTLLEDKTITKIFHFGRFDLAILAHTFGVMPDAVFCTKLASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+AD LS Q++YAASDV++LH L+ F E+L+R R D+A Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C FL RA+LDLLGW VDIF+H Sbjct: 180 KACFQFLPVRAKLDLLGWSEVDIFAH 205 >gi|148251746|ref|YP_001236331.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. BTAi1] gi|146403919|gb|ABQ32425.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. BTAi1] Length = 204 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 120/205 (58%), Positives = 155/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+R+H GD+P +RY ++A+DTET+GL P RDRLC+VQLSPGDG+ D+++I G + Sbjct: 2 TVRLHRGDLPD--LSRYTSSVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L + KIFH+ RFD+A LF+TFGV +PV+CTKIASRL RTYT++HGLKD Sbjct: 60 APNLKALLANPAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL +++SK QQSSDW AD+LS+ QL YAASDV+HLHALR + L R GR LA + Sbjct: 120 VRELLNVDLSKQQQSSDWGADNLSEPQLAYAASDVLHLHALREKLDVMLAREGRLGLAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL G+E DIF+HS Sbjct: 180 CFAFLPHRATLDLGGFEAEDIFAHS 204 >gi|254718341|ref|ZP_05180152.1| hypothetical protein Bru83_02133 [Brucella sp. 83/13] gi|265983300|ref|ZP_06096035.1| 3'-5' exonuclease [Brucella sp. 83/13] gi|306839563|ref|ZP_07472369.1| 3'-5' exonuclease [Brucella sp. NF 2653] gi|264661892|gb|EEZ32153.1| 3'-5' exonuclease [Brucella sp. 83/13] gi|306405349|gb|EFM61622.1| 3'-5' exonuclease [Brucella sp. NF 2653] Length = 205 Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCMVQISPGDGTADVIQIEAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLANAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205 >gi|299133324|ref|ZP_07026519.1| 3'-5' exonuclease [Afipia sp. 1NLS2] gi|298593461|gb|EFI53661.1| 3'-5' exonuclease [Afipia sp. 1NLS2] Length = 204 Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 121/205 (59%), Positives = 152/205 (74%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY ++A+DTETLGL P RDRLC+VQLS GDG+ D+++I AG + Sbjct: 2 TIRLHRGDLPD--LSRYTHSVAIDTETLGLNPHRDRLCVVQLSNGDGSADVVQIPAGHTD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D K+FH+ RFDIAVL++ FGV +PV+CTKIAS+L RTYT++HGLKD Sbjct: 60 APNLKKLLGDPAITKLFHFARFDIAVLYHAFGVMAQPVYCTKIASKLVRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E+LG+ ISK QQSSDW A LS+ QL YAASDV+HLHALR + L R R LA + Sbjct: 120 VREMLGVEISKQQQSSDWGAASLSEAQLSYAASDVLHLHALRDKLDAMLAREDREPLAKA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GWE DIF+HS Sbjct: 180 CFEFLPTRARLDLQGWEETDIFAHS 204 >gi|163842395|ref|YP_001626799.1| hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445] gi|163673118|gb|ABY37229.1| Hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445] Length = 205 Score = 254 bits (648), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 122/205 (59%), Positives = 154/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H D+P V A+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHRNDLP-NLDNYQVAAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL + FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205 >gi|49473901|ref|YP_031943.1| ribonuclease d [Bartonella quintana str. Toulouse] gi|49239404|emb|CAF25742.1| Ribonuclease d [Bartonella quintana str. Toulouse] Length = 206 Score = 253 bits (647), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 131/207 (63%), Positives = 161/207 (77%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P +DA+AVDTETLGL P RDRLC+VQLS GDGT DII+IA GQ Sbjct: 1 MKEIRVHQGDLP-NLDNYQIDAVAVDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K+APNLV +L D+ KIFH+GRFD+A+L YTFGV VFCTKIAS+LTRTYT++HGLK Sbjct: 60 KSAPNLVKLLKDKAITKIFHFGRFDLAILAYTFGVMPDVVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+A+ LS Q++YAASDV++LH LR F E+L+R R ++A Sbjct: 120 EICCELLNVNISKQQQSSDWAAEILSRAQIEYAASDVLYLHRLRDIFEERLKREERENVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW VDIF+HS Sbjct: 180 KACFQFLPMRAKLDLLGWSEVDIFAHS 206 >gi|23501034|ref|NP_697161.1| 3'-5' exonuclease family protein [Brucella suis 1330] gi|161618108|ref|YP_001591995.1| hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365] gi|254705301|ref|ZP_05167129.1| hypothetical protein Bsuib36_15553 [Brucella suis bv. 3 str. 686] gi|260567236|ref|ZP_05837706.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40] gi|261756011|ref|ZP_05999720.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686] gi|23346898|gb|AAN29076.1| 3'-5' exonuclease family protein [Brucella suis 1330] gi|161334919|gb|ABX61224.1| Hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365] gi|260156754|gb|EEW91834.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40] gi|261745764|gb|EEY33690.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686] Length = 205 Score = 253 bits (647), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 122/205 (59%), Positives = 154/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I A QK Sbjct: 2 TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEADQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL + FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205 >gi|90421943|ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18] gi|90103957|gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18] Length = 204 Score = 253 bits (647), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 119/205 (58%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 2 TIRLHRGDLPD--LSRYTDSVAIDTETMGLNPHRDRLCVVQLSNGDGSADVVQIPVGHSD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L+ GV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKKLLGDPAITKIFHFARFDLAALYNALGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E+LG+++SK QQSSDW A LSD QL YAASDV+HLH LR + L R GR++LA + Sbjct: 120 VREVLGVDLSKQQQSSDWGAQSLSDAQLAYAASDVLHLHGLRTRLDAMLAREGRTELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDL GW DIF+HS Sbjct: 180 CFDFLPTRAKLDLSGWAEQDIFAHS 204 >gi|27375830|ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium japonicum USDA 110] gi|27348968|dbj|BAC45984.1| blr0719 [Bradyrhizobium japonicum USDA 110] Length = 204 Score = 253 bits (647), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 117/205 (57%), Positives = 155/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+R+H GD+P +RY A+A+DTET+GL P RDRLC+VQLSPGDG+ D+++I G + Sbjct: 2 TVRLHRGDLPD--LSRYTGAVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L + KIFH+ RFD+AVL+ +FGV P++CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKALLANPAITKIFHFARFDVAVLYQSFGVMTGPIYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E+L +++SK QQSSDW +D L++ QL YAASDV+HLHALR + L R GR+ LA + Sbjct: 120 VREVLNVDLSKQQQSSDWGSDSLTEPQLAYAASDVLHLHALRERLDAMLVREGRTGLAKA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA LDL GW DIF+HS Sbjct: 180 CFDFLPTRALLDLQGWAEEDIFAHS 204 >gi|85714031|ref|ZP_01045020.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A] gi|85699157|gb|EAQ37025.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A] Length = 206 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 152/205 (74%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P + ARY + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ + Sbjct: 2 TIRLHRGDLPDQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQHD 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L FGV RPV+CTKIASRLTRTYT++HGLKD Sbjct: 62 APNLKKLLGDPAIVKIFHFARFDLAALHNAFGVMPRPVYCTKIASRLTRTYTDRHGLKDL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E L I++SK QQSSDW + LSD QL YAASDV+HLHALR + L R R+ LA + Sbjct: 122 VREALSIDLSKQQQSSDWGSLALSDAQLAYAASDVLHLHALRDKLDAMLAREDRTGLAQA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW+ DIF+HS Sbjct: 182 CFEFLPARAMLDLSGWDAEDIFAHS 206 >gi|217976351|ref|YP_002360498.1| 3'-5' exonuclease [Methylocella silvestris BL2] gi|217501727|gb|ACK49136.1| 3'-5' exonuclease [Methylocella silvestris BL2] Length = 204 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/204 (59%), Positives = 153/204 (75%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H+GD+P A + A+A+DTET+GL+P RDRLC+VQLS GDG+ D+++IA Q Sbjct: 2 TIRLHKGDLPEGEA--FSGAVAIDTETMGLVPGRDRLCLVQLSRGDGSADLVQIAPAQTA 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D EK+FH+ RFDIAVL+ TFGV P++CTKIAS+L RTYT++HGLKD Sbjct: 60 APNLTRLLADPAVEKLFHFARFDIAVLYKTFGVMTGPIYCTKIASKLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLGI +SK QQSSDW D LS+ QL YAASDV+HLHALR + L+R GR LA + Sbjct: 120 ARELLGIELSKQQQSSDWGGDILSEAQLAYAASDVLHLHALRTKLDAMLEREGRRALAEA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA+LDL+GW + DIFSH Sbjct: 180 SFAFLPTRAKLDLMGWGDSDIFSH 203 >gi|121602332|ref|YP_989471.1| 3'-5' exonuclease domain-containing protein [Bartonella bacilliformis KC583] gi|120614509|gb|ABM45110.1| 3'-5' exonuclease domain protein [Bartonella bacilliformis KC583] Length = 206 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 127/207 (61%), Positives = 160/207 (77%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P VDA+A+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ Sbjct: 1 MIDIRVHQGDLP-NLDNYCVDAVAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNLV +L D+ KIFH+GRFD+A+L +TFG+ VFCTKIAS+LTRTYT++HGLK Sbjct: 60 NSAPNLVKLLADKAITKIFHFGRFDLAILAHTFGIMPDAVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+A+ LS Q++YAASDV++LH L+ F E+L+R R D+A Sbjct: 120 EICSELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKSVFEERLKREEREDVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW +DIF+HS Sbjct: 180 KACFQFLPVRAKLDLLGWPEIDIFAHS 206 >gi|304392222|ref|ZP_07374164.1| 3'-5' exonuclease [Ahrensia sp. R2A130] gi|303296451|gb|EFL90809.1| 3'-5' exonuclease [Ahrensia sp. R2A130] Length = 211 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 120/205 (58%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H+ D+P + Y D++A+DTETLGL PRRDRLC+VQLSPGDGT D+++I GQ + Sbjct: 9 TIRLHKNDLPD--LSNYSDSVAIDTETLGLRPRRDRLCVVQLSPGDGTADVVQIEKGQTS 66 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APN+ +LVD +KI+HYGRFDIAVL++ FG FCTKIASRLTRTYT++HGLK+ Sbjct: 67 APNIEKLLVDTNVQKIYHYGRFDIAVLYHAFGALSDNNFCTKIASRLTRTYTDRHGLKNL 126 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+++SK QQSSDW+A++L+ Q YAASDV+HLHALR ++L R R LA Sbjct: 127 THELIGVDLSKVQQSSDWAAEELTKAQQAYAASDVLHLHALRDALLKRLAREDRQHLADE 186 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R LDL GWE+ DIF+HS Sbjct: 187 CFKFLPTRCLLDLAGWEDTDIFAHS 211 >gi|92115811|ref|YP_575540.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14] gi|91798705|gb|ABE61080.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14] Length = 206 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 120/205 (58%), Positives = 150/205 (73%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P + RY + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ+ Sbjct: 2 TIRLHRGDLPDQDLKRYTHSAAIDTETMGLNPHRDRLCVVQMSPGDGSADVIQIAQGQRE 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L FGV +PV+CTKIASRL RTYT++HGLKD Sbjct: 62 APNLKQLLADPTIVKIFHFARFDLAALSNAFGVMPQPVYCTKIASRLIRTYTDRHGLKDL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL I +SK QQSSDW A LSD QL YAASDV+HLHALR + L R R+ +A + Sbjct: 122 VRELLNIELSKQQQSSDWGAQTLSDAQLAYAASDVLHLHALRDKLDAMLARENRTGMAQA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDL GW DIF+H+ Sbjct: 182 CFEFLPTRAKLDLSGWGAEDIFAHA 206 >gi|146337290|ref|YP_001202338.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. ORS278] gi|146190096|emb|CAL74088.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. ORS278] Length = 204 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 121/205 (59%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+R+H GD+P +RY ++A+DTET+GL P RDRLC+VQLSPGDG+ D+++I G + Sbjct: 2 TVRLHRGDLPD--LSRYTSSVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L + KIFH+ RFD+A LF+TFGV +PV+CTKIASRL RTYT++HGLKD Sbjct: 60 APNLKTLLGNTAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL I++SK QQSSDW AD LS+ QL YAASDV+HLHALR + L R GR LA + Sbjct: 120 VRELLNIDLSKQQQSSDWGADSLSEPQLAYAASDVLHLHALREKLDVMLAREGRLALAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL G+E DIF+HS Sbjct: 180 CFAFLPHRATLDLGGFEADDIFAHS 204 >gi|240849913|ref|YP_002971302.1| 3'-5' exonuclease [Bartonella grahamii as4aup] gi|240267036|gb|ACS50624.1| 3'-5' exonuclease [Bartonella grahamii as4aup] Length = 206 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 126/207 (60%), Positives = 159/207 (76%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P DAIA+DTETLGL P RDRLC+VQLS GDGT D+I+I+ GQ Sbjct: 1 MAEIRVHQGDLP-NLDNYKTDAIAIDTETLGLQPHRDRLCVVQLSSGDGTADVIQISKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K+APNLV +L D KIFH+GRFD+A+L +TFGV +FCTKIAS+LTRTYT++HGLK Sbjct: 60 KSAPNLVKLLGDNAVIKIFHFGRFDLAILAHTFGVMPEAIFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+A+ LS Q++YAASDV++LH L++ F E+L+R R +A Sbjct: 120 EICNELLNVNISKQQQSSDWAAETLSQAQIEYAASDVLYLHRLKVIFEERLRREERESVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW VDIF+HS Sbjct: 180 KACFQFLPMRAKLDLLGWAEVDIFAHS 206 >gi|319403664|emb|CBI77249.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498] Length = 206 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 128/206 (62%), Positives = 159/206 (77%), Gaps = 1/206 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P VD+IA+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ Sbjct: 1 MAEIRVHQGDLP-NLDNYCVDSIAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNLV +L D+ KIFH+GRFD+A+L +TFGV VFCTK+AS+LTRTYT++HGLK Sbjct: 60 NSAPNLVTLLEDKTITKIFHFGRFDLAILAHTFGVMPDAVFCTKLASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+AD LS Q++YAASDV++LH L+ F E+L+R R D+A Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C FL RA+LDLLGW VDIF+H Sbjct: 180 KACFQFLPVRAKLDLLGWSEVDIFAH 205 >gi|49475064|ref|YP_033105.1| ribonuclease d [Bartonella henselae str. Houston-1] gi|49237869|emb|CAF27065.1| Ribonuclease d [Bartonella henselae str. Houston-1] Length = 206 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 129/207 (62%), Positives = 160/207 (77%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT IRVH+GD+P R +DA+AVDTETLGL P RDRLC+VQLS GDGT D+I+IA GQ Sbjct: 1 MTEIRVHQGDLPNLDNYR-IDAVAVDTETLGLQPHRDRLCVVQLSSGDGTADVIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K+APNLV +L D KIFH+GRFD+A+L +TFGV VFCTKIAS+LTRTYT++HGLK Sbjct: 60 KSAPNLVRLLSDRDITKIFHFGRFDLAILAHTFGVMPDVVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+A+ LS Q++YAASDV++LH L+ F E+L+R R +A Sbjct: 120 EICGELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKDIFEERLKREERESVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA LDLLGW +DIF+HS Sbjct: 180 KACFQFLPMRANLDLLGWSEIDIFAHS 206 >gi|114706944|ref|ZP_01439843.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506] gi|114537494|gb|EAU40619.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506] Length = 207 Score = 250 bits (639), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 119/205 (58%), Positives = 149/205 (72%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIRVH+GD+P RY +A+DTETLGL RDRLC+VQLSPGDGT D+++IA GQ Sbjct: 2 TIRVHKGDLPD--LDRYTGPVAIDTETLGLNTMRDRLCVVQLSPGDGTADVVQIAKGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APN+ +L D + KIFHY RFD+A L++ FG +FCTKIASRLTRTYT++HGLKD Sbjct: 60 APNISALLADASKTKIFHYARFDVAALYHAFGAMTEGIFCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G+++SK QQSSDW+ + LS QL YAASDV++LH + ++L+R R DLA Sbjct: 120 ARELVGVDLSKQQQSSDWAVETLSPAQLDYAASDVLYLHDIMGALYKRLEREDRMDLARE 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R LDL GWEN DIFSHS Sbjct: 180 CFRFLPMRVRLDLAGWENEDIFSHS 204 >gi|182677567|ref|YP_001831713.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039] gi|182633450|gb|ACB94224.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039] Length = 204 Score = 250 bits (639), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 118/204 (57%), Positives = 154/204 (75%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +H+GD+P + + ++AVDTETLGL+P RDRLC+VQLS GDG +++I GQ +A Sbjct: 3 IHLHKGDLPENVS--FGRSVAVDTETLGLLPHRDRLCLVQLSGGDGQAHLVQIKPGQTHA 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P+L +L+D K+FHY RFDIAVL+ TFG P++CTKIAS+LTRTYT++HGLKD Sbjct: 61 PHLERLLIDPNVTKLFHYARFDIAVLYKTFGTMTTPLYCTKIASKLTRTYTDRHGLKDLA 120 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +ELLG+++SK QQSSDW AD LSD QL YAASDV+HLHALR + L+R R++LA +C Sbjct: 121 RELLGVDLSKQQQSSDWGADTLSDAQLTYAASDVLHLHALRTKLDGMLEREHRTELAQAC 180 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW DIFSH+ Sbjct: 181 FDFLPTRAKLDLAGWAETDIFSHA 204 >gi|296446798|ref|ZP_06888736.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b] gi|296255673|gb|EFH02762.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b] Length = 204 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 123/204 (60%), Positives = 150/204 (73%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H+GD+P A +A+DTETLGL P RDRLC+VQLS G+G D++RIA GQ Sbjct: 2 TIRLHQGDLPD--GADLGPVVAIDTETLGLNPHRDRLCLVQLSGGNGDADLVRIAPGQTR 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L + K+FH+GRFDIAV+ TFGV PV+CTKIAS+L RTYT++HGLKD Sbjct: 60 APNLEALLANPNVLKLFHFGRFDIAVMAKTFGVMAEPVYCTKIASKLIRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLG+ ISK QQSSDW AD LSD QL YAASDV++LHALR + L R R+DLA + Sbjct: 120 VRELLGVEISKQQQSSDWGADTLSDAQLSYAASDVLYLHALREKLDVMLAREHRTDLAAA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL RA LDL GW +DIFSH Sbjct: 180 CFAFLPMRARLDLAGWPEIDIFSH 203 >gi|319405135|emb|CBI78741.1| Ribonuclease D [Bartonella sp. AR 15-3] Length = 206 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/206 (61%), Positives = 158/206 (76%), Gaps = 1/206 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IR+H+GD+P VD++A+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ Sbjct: 1 MAEIRIHQGDLP-NLDNYCVDSVAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 APNLV +L D+K KIFH+GRFD+A+L +TF V VFCTKIAS+LTRTYT++HGLK Sbjct: 60 NRAPNLVTLLEDKKITKIFHFGRFDLAILAHTFAVMPDVVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+AD LS Q++YAASDV++LH L+ F E+L+R R D+A Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C FL RA+LDLLGW VDIF+H Sbjct: 180 KACFQFLPVRAKLDLLGWAEVDIFAH 205 >gi|298290361|ref|YP_003692300.1| 3'-5' exonuclease [Starkeya novella DSM 506] gi|296926872|gb|ADH87681.1| 3'-5' exonuclease [Starkeya novella DSM 506] Length = 210 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 159/209 (76%), Gaps = 4/209 (1%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--AA 58 +IR+H GD+ + +A+DTETLGL P RDRLC+VQLSPGDGT D+++I A Sbjct: 2 SIRLHRGDLVDLSRYTPENAPFVAIDTETLGLNPHRDRLCVVQLSPGDGTADVVQIPAGA 61 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 G +APNL +L D + K+FH+ RFD+AVL TFG+ V PV+CTKIASRLTRTYT++HG Sbjct: 62 GPGSAPNLEALLTDPRITKLFHFARFDVAVLGKTFGLTVAPVWCTKIASRLTRTYTDRHG 121 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 LK+ ++EL+G+++SK QQSSDW+A++LS+ QLQYAASDV++LHALR + L R GR++ Sbjct: 122 LKELVRELIGVDLSKQQQSSDWAAEELSEAQLQYAASDVLYLHALREKLASMLARDGRTE 181 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSHS 207 LA SC FL RA+LDL GW + DIF+HS Sbjct: 182 LAQSCFEFLPTRAKLDLAGWPDEDIFAHS 210 >gi|91974656|ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5] gi|91681112|gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5] Length = 204 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 118/205 (57%), Positives = 152/205 (74%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY +++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 2 TIRLHRGDLPD--LSRYTNSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGHSD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L+ FGV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKKLLGDPTVVKIFHFARFDLAALYNAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL +++SK QQSSDW A+ LSD QL YAASDV+HLH LR + L R R+DLA + Sbjct: 120 VRELLNVDLSKQQQSSDWGAETLSDAQLAYAASDVLHLHGLREKLDAMLARENRTDLAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ LDL GW DIF+HS Sbjct: 180 CFGFLPHRSRLDLDGWSEEDIFAHS 204 >gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53] gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53] Length = 204 Score = 247 bits (631), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 117/205 (57%), Positives = 152/205 (74%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G Sbjct: 2 TIRLHRGDLPD--LSRYTDSVAIDTETMGLNPHRDRLCVVQLSNGDGSADVVQIPLGHTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD++ L GV +P++CTKIASRL RTYT++HGLKD Sbjct: 60 APNLKKLLGDPAVTKIFHFARFDLSALSNALGVMPQPIYCTKIASRLCRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E+LGI++SK QQSSDW A +L+D QL YAASDV+HLHALR + L R GR+ +A + Sbjct: 120 VREVLGIDLSKQQQSSDWGAQNLTDAQLAYAASDVLHLHALRARLDAMLAREGRTAMAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA LDL GW N DIF+HS Sbjct: 180 CFDFLPTRAMLDLSGWNNEDIFAHS 204 >gi|86747785|ref|YP_484281.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2] gi|86570813|gb|ABD05370.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2] Length = 204 Score = 246 bits (629), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 120/205 (58%), Positives = 150/205 (73%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 2 TIRLHRGDLPD--LTRYNDSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGHSD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L GV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKKLLGDPNILKIFHFARFDLAALSNALGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL +++SK QQSSDW AD LSD QL YAASDV+HLHALR + L R R++LA + Sbjct: 120 VRELLNVDLSKQQQSSDWGADTLSDAQLAYAASDVLHLHALRDKLDAMLARENRTELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW DIF+HS Sbjct: 180 CFGFLPHRARLDLGGWSEEDIFAHS 204 >gi|154244026|ref|YP_001414984.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2] gi|154158111|gb|ABS65327.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2] Length = 206 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 121/207 (58%), Positives = 151/207 (72%), Gaps = 4/207 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-- 60 TIR+H GD+PA+ A V +A+DTET+GL P RDRLC+VQLS GDG+ D+++I G Sbjct: 2 TIRLHRGDLPADFVAAPV--VAIDTETMGLNPFRDRLCLVQLSNGDGSADLVQIPQGADA 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 APNL +L D K+FH+GRFDIAVL +TF V +PV+CTKIASRL RTYT++HGLK Sbjct: 60 TTAPNLTRLLADPAITKLFHFGRFDIAVLQHTFHVMPQPVWCTKIASRLVRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D L+E + ++ISK QQSSDW A DLSD QL YAASDV+HLHA++ + E L R R+ LA Sbjct: 120 DLLRETINVDISKQQQSSDWGAKDLSDAQLAYAASDVLHLHAVKAKLEEMLARENRTGLA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA LDL GW DIF+HS Sbjct: 180 AACFAFLPARAALDLSGWAEEDIFAHS 206 >gi|307943000|ref|ZP_07658345.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4] gi|307773796|gb|EFO33012.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4] Length = 206 Score = 241 bits (614), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 118/205 (57%), Positives = 147/205 (71%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+ D+ DA+AVDTETLGL RDRLC+VQLSPGDG+ D+++I G Sbjct: 2 TIRFHKNDLSDLTHYVSCDAVAVDTETLGLNLLRDRLCVVQLSPGDGSADVVQIEKGMTA 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D R KIFHY RFD+A+L G+ V PV+CTKIAS+L RTYT++HGLKD Sbjct: 62 APNLTALLSDPARTKIFHYARFDVAILRQNLGIHVDPVWCTKIASKLCRTYTDRHGLKDI 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG++ISK QQSSDW+A+ L+D QL YAASDV+HLHAL+ + L+R R+ LA + Sbjct: 122 TRELLGVDISKQQQSSDWAAEQLTDAQLAYAASDVLHLHALKEKLEFMLRREERTHLAEA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 FL RAELDL GW DIF+HS Sbjct: 182 SFGFLPTRAELDLKGWGETDIFAHS 206 >gi|254470791|ref|ZP_05084194.1| 3'-5' exonuclease [Pseudovibrio sp. JE062] gi|211959933|gb|EEA95130.1| 3'-5' exonuclease [Pseudovibrio sp. JE062] Length = 206 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 112/205 (54%), Positives = 148/205 (72%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+ D+P DA+AVDTETLGL P RDRLC+VQLS GDG+ D+++I GQ Sbjct: 2 TIRYHKNDLPDLSNYSSADAVAVDTETLGLNPHRDRLCVVQLSSGDGSADVVQIERGQLA 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL + D + KIFH+ RFD+A+L + V PV+CTKIAS+L RTYT++HGLKD Sbjct: 62 APNLQALFEDASKPKIFHFARFDVAILKEYLDISVSPVWCTKIASKLVRTYTDRHGLKDI 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G+++SK QQSSDW+A+ L+D QL YAASDV+HLH L+ + L+R R+++A Sbjct: 122 CRELIGVDLSKQQQSSDWAAEKLTDAQLAYAASDVLHLHKLKERLEFMLEREERTEIAQK 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDL GW DIF+HS Sbjct: 182 CFDFLPTRAQLDLAGWPETDIFAHS 206 >gi|323136907|ref|ZP_08071987.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242] gi|322397668|gb|EFY00190.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242] Length = 204 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 117/204 (57%), Positives = 148/204 (72%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H+GD+PA A + +A+DTETLGL RRDRLC+VQLS GDG ++++IA GQ Sbjct: 2 TIRLHQGDLPAGVAVAPI--VAIDTETLGLNHRRDRLCVVQLSIGDGDAELVQIAKGQTQ 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 A NLV +LVD K K+FH+ RFD+ +L TFGV PV+CTKIAS+LTRTYT++HGLKD Sbjct: 60 AENLVKLLVDPKVLKLFHFARFDMGILAKTFGVMPAPVYCTKIASKLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL G+ ISK QQSSDW A L+D Q YAASDV++LH L+ + L R GR++LA + Sbjct: 120 ARELAGVEISKQQQSSDWGAATLTDAQQAYAASDVLYLHQLKEKLDAMLAREGRTELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL R LDL GW DIFSH Sbjct: 180 CFDFLPTRTRLDLAGWPESDIFSH 203 >gi|319898371|ref|YP_004158464.1| Ribonuclease D [Bartonella clarridgeiae 73] gi|319402335|emb|CBI75874.1| Ribonuclease D [Bartonella clarridgeiae 73] Length = 193 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 120/187 (64%), Positives = 148/187 (79%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 V++IA+DTETLGL P RDRLC+VQLS GDGT DII++A GQ APNLV +L D+ KIF Sbjct: 6 VNSIAIDTETLGLKPHRDRLCVVQLSSGDGTADIIQVAKGQNRAPNLVALLEDKAITKIF 65 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H+GRFD+A+L +TFGV VFCTKIAS+LTRTYT++HGLK+ ELL INISK QQSSD Sbjct: 66 HFGRFDLAILAHTFGVIPDVVFCTKIASKLTRTYTDRHGLKEICSELLNINISKQQQSSD 125 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199 W+AD LS Q++YAASDV++LH L+ F E+L+R R D+A +C FL RA+LDLLGW Sbjct: 126 WAADALSRAQIEYAASDVLYLHRLKNIFEERLKREEREDIAKACFQFLPVRAKLDLLGWS 185 Query: 200 NVDIFSH 206 VDIF+H Sbjct: 186 EVDIFAH 192 >gi|188581677|ref|YP_001925122.1| 3'-5' exonuclease [Methylobacterium populi BJ001] gi|179345175|gb|ACB80587.1| 3'-5' exonuclease [Methylobacterium populi BJ001] Length = 209 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 111/206 (53%), Positives = 150/206 (72%), Gaps = 2/206 (0%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + IR+H GD+P + A AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I G Sbjct: 6 SRIRLHRGDLPLDFAPGA--AIAIDTETLGLNPHRDRLCVVQISRGDGSADVVQIRPGDP 63 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L +L D + KIFH+ RFD+AVLF FGV PV+CTK+AS+L RTYT++HGLKD Sbjct: 64 APERLKAVLADPQIVKIFHFARFDLAVLFKAFGVMPMPVYCTKVASKLARTYTDRHGLKD 123 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++EL+G+++SK QQSSDW A+ LS Q+ YAASDV+HLHA R + L R GR+++A Sbjct: 124 VVRELVGVDLSKQQQSSDWGAEALSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQ 183 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA+LDL GW +DIF+H+ Sbjct: 184 ACFDFLPTRAKLDLAGWPEMDIFAHT 209 >gi|163851920|ref|YP_001639963.1| 3'-5' exonuclease [Methylobacterium extorquens PA1] gi|163663525|gb|ABY30892.1| 3'-5' exonuclease [Methylobacterium extorquens PA1] Length = 209 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 111/206 (53%), Positives = 149/206 (72%), Gaps = 2/206 (0%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + IR+H GD+P + A AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I G Sbjct: 6 SRIRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDP 63 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L+ +L D KIFH+ RFD+AVLF FGV PV+CTKIAS+L RTYT++HGLKD Sbjct: 64 APERLMAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++EL+G+++SK QQSSDW A LS Q+ YAASDV+HLHA R + L R GR+++A Sbjct: 124 VVRELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQ 183 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL R++LDL GW +DIF+H+ Sbjct: 184 ACFDFLPTRSKLDLAGWPEIDIFAHA 209 >gi|170743378|ref|YP_001772033.1| 3'-5' exonuclease [Methylobacterium sp. 4-46] gi|168197652|gb|ACA19599.1| 3'-5' exonuclease [Methylobacterium sp. 4-46] Length = 204 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 117/203 (57%), Positives = 146/203 (71%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 R+H GD+P + A AIAVDTETLGL P RDRLC+VQ+S GDG D+++IA G Sbjct: 4 RLHRGDLPDDYAPG--PAIAVDTETLGLEPHRDRLCVVQISRGDGEADLVQIAKGGPEPV 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D KIFH+ RFD+AVLF+ GV P++CTK+ASRL+RTYT++HGLKD ++ Sbjct: 62 VLKRVLTDPAVTKIFHFARFDLAVLFHRLGVMPGPIYCTKVASRLSRTYTDRHGLKDLVR 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELLGI ISK QQSSDW A+ LS Q++YAASDV+HLHALR + L R R+ LA +C Sbjct: 122 ELLGIEISKQQQSSDWGAETLSPAQIEYAASDVLHLHALRAKLDAMLAREERTALAEACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 FL RA LDLLGW+ VDI +HS Sbjct: 182 AFLPTRARLDLLGWDEVDILAHS 204 >gi|254561638|ref|YP_003068733.1| 3'-5' exonuclease [Methylobacterium extorquens DM4] gi|254268916|emb|CAX24877.1| 3'-5' exonuclease [Methylobacterium extorquens DM4] Length = 209 Score = 234 bits (596), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 111/206 (53%), Positives = 148/206 (71%), Gaps = 2/206 (0%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + IR+H GD+P + A AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I G Sbjct: 6 SRIRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDP 63 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L +L D KIFH+ RFD+AVLF FGV PV+CTKIAS+L RTYT++HGLKD Sbjct: 64 APERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++EL+G+++SK QQSSDW A LS Q+ YAASDV+HLHA R + L R GR+++A Sbjct: 124 VVRELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQ 183 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL R++LDL GW +DIF+H+ Sbjct: 184 ACFDFLPTRSKLDLAGWPEIDIFAHA 209 >gi|126732863|ref|ZP_01748654.1| 3'-5' exonuclease [Sagittula stellata E-37] gi|126706639|gb|EBA05713.1| 3'-5' exonuclease [Sagittula stellata E-37] Length = 204 Score = 234 bits (596), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 110/203 (54%), Positives = 146/203 (71%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 ++H+GD+P V +A+D ET+GL P RDRLC+VQLS GDG ++++A GQ AP Sbjct: 4 QLHQGDLPDNLDLGPV--VAIDCETMGLHPHRDRLCVVQLSAGDGNAHLVQVARGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL +L D K+FHYGRFDIA ++ FG PV+CTKIASRL RTYT++HGLK+ + Sbjct: 62 NLSRLLTDPDVLKLFHYGRFDIAAMYNAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELLG++ISK QQSSDW A+ L+D Q YAASDV+HLH LR L+R GR+++A +C Sbjct: 122 ELLGVDISKQQQSSDWGAETLTDAQKDYAASDVLHLHRLRTALNAMLEREGRTEIAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW + DIF+H+ Sbjct: 182 DFLPARAKLDLAGWPDTDIFAHA 204 >gi|240139043|ref|YP_002963518.1| 3'-5' exonuclease [Methylobacterium extorquens AM1] gi|240009015|gb|ACS40241.1| 3'-5' exonuclease [Methylobacterium extorquens AM1] Length = 209 Score = 234 bits (596), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 111/206 (53%), Positives = 148/206 (71%), Gaps = 2/206 (0%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + IR+H GD+P + A AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I G Sbjct: 6 SRIRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDP 63 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L +L D KIFH+ RFD+AVLF FGV PV+CTKIAS+L RTYT++HGLKD Sbjct: 64 APERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++EL+G+++SK QQSSDW A LS Q+ YAASDV+HLHA R + L R GR+++A Sbjct: 124 VVRELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQ 183 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL R++LDL GW +DIF+H+ Sbjct: 184 ACFDFLPTRSKLDLAGWPEIDIFAHA 209 >gi|300021932|ref|YP_003754543.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888] gi|299523753|gb|ADJ22222.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888] Length = 205 Score = 234 bits (596), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 114/205 (55%), Positives = 148/205 (72%), Gaps = 3/205 (1%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T I++H+GD+P + + IA+DTET+GL P RDRLC+VQLS GDGT +++ Sbjct: 4 TKIKLHKGDLP--TGLTFPNGIAIDTETMGLNPHRDRLCLVQLSGGDGTAHLVKFDGKSY 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +APNL +L D K KIFH+ RFD+AVL + GV P++CTKIAS+L RTYT++HGLKD Sbjct: 62 DAPNLKALLADPKSLKIFHFARFDVAVLEHYLGVVTSPIYCTKIASKLARTYTDRHGLKD 121 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + E+LGI ISK QQSSDW A +LSD Q YAA+DV+HLHAL+ + E L R GR DLA Sbjct: 122 LVGEILGIEISKQQQSSDWGAAELSDSQRSYAANDVLHLHALKTRLDEMLARTGRQDLAK 181 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 + FL RA+LDLLG+E+ DIF+H Sbjct: 182 AAFGFLPIRAKLDLLGFED-DIFAH 205 >gi|21328703|gb|AAM48709.1| 3'- 5' exonuclease family protein [uncultured marine proteobacterium] Length = 204 Score = 234 bits (596), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 115/205 (56%), Positives = 149/205 (72%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T V++GD+P + +A+D ET+GL P+RDRLC+VQLS GDG ++++A GQ Sbjct: 2 TNHVYKGDLPDGLELGPI--VAIDCETMGLNPKRDRLCVVQLSSGDGHAHLVQVAKGQTA 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K+FH+GRFDIA + FG PV+CTKIASR+TRTYT++HGLK+ Sbjct: 60 APNLCRMLEDPNVLKLFHFGRFDIAAMKEAFGALTAPVYCTKIASRMTRTYTDRHGLKNL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L+ELL ++ISK QQSSDW A DL+ Q++YAASDV++LHALR + E L R GR +LA S Sbjct: 120 LQELLCVDISKQQQSSDWGAADLTKAQVEYAASDVLYLHALRERLNEMLIREGRMELAQS 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RAELDL GW + DIF+HS Sbjct: 180 CFDFLPTRAELDLAGWPDSDIFAHS 204 >gi|84500657|ref|ZP_00998906.1| exonuclease, putative [Oceanicola batsensis HTCC2597] gi|84391610|gb|EAQ03942.1| exonuclease, putative [Oceanicola batsensis HTCC2597] Length = 204 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 107/185 (57%), Positives = 141/185 (76%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQ+S GDG I+++A GQ +APNL ML D K K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCVVQMSGGDGDAHIVQVAIGQDSAPNLCAMLTDPKVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA ++ FG PV+CTKIASRL RTYT++HGLK+ +ELLGI++SK QQSSDW A Sbjct: 80 RFDIAAMYNAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQELLGIDLSKQQQSSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 ++LS QL+YAASDV++LH LR + +L R GR+++A +C +FL RA LDL+GW D Sbjct: 140 EELSAAQLEYAASDVLYLHRLREELDARLAREGRTEIAQACFDFLPVRARLDLMGWPETD 199 Query: 203 IFSHS 207 IF+HS Sbjct: 200 IFAHS 204 >gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831] gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831] Length = 207 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 114/205 (55%), Positives = 144/205 (70%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+R+H GD+PA A A+A+DTETLGL P RDRLC+VQLS GDGT D+++I Sbjct: 5 TVRLHRGDLPASYDAGR--AVAIDTETLGLNPHRDRLCVVQLSTGDGTADVVQIPQAGPE 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L D KIFH+ RFD+AVL+ GV PV+CTKIAS+L RTYT++HGLKD Sbjct: 63 PVVLKRVLADPGILKIFHFARFDVAVLYRALGVMPSPVYCTKIASKLARTYTDRHGLKDV 122 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++EL+G+++SK QQSSDW A+ LS QL YAASDV+HLHA R + L R GR+DLA + Sbjct: 123 VRELVGVDLSKQQQSSDWGAETLSQAQLDYAASDVLHLHAARERLDAMLAREGRTDLAAA 182 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW DIF+H+ Sbjct: 183 CFGFLPTRARLDLDGWPETDIFAHT 207 >gi|119385336|ref|YP_916392.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222] gi|119375103|gb|ABL70696.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222] Length = 204 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 117/206 (56%), Positives = 152/206 (73%), Gaps = 5/206 (2%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI ++ D+P + V +A+DTET+GL PRRDRLC+VQLS GDG +++IA GQ+ Sbjct: 2 TITLYRNDLPDDLDLGPV--VAIDTETMGLDPRRDRLCLVQLSSGDGNAHLVQIAKGQRE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K K+FH+GRFDIA L FGV +PV+CTKIAS++ RTYT++HGLK Sbjct: 60 APNLARMLADPKVLKLFHFGRFDIAALEAAFGVVTKPVWCTKIASKMVRTYTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G++ISK QQ+SDW A +LS+ QL+YAASDV++LHAL+ + ++L R GR LA + Sbjct: 120 LSELVGVDISKQQQTSDWGAAELSEAQLEYAASDVLYLHALKAELEKRLAREGRLGLAQA 179 Query: 183 CCNFLMDRAELDLLGW--ENVDIFSH 206 C +FL RA LDLLGW EN DIF H Sbjct: 180 CFDFLPARAHLDLLGWGDEN-DIFHH 204 >gi|23009303|ref|ZP_00050402.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 111/206 (53%), Positives = 146/206 (70%), Gaps = 2/206 (0%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + IR+H GD+P + + AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I G Sbjct: 6 SRIRLHRGDLPPDF--QPGSAIAIDTETLGLNPHRDRLCVVQISRGDGSADVVQIRPGDP 63 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L +L D KIFH+ RFD+AVLF GV PV+CTK+AS+L RTYT++HGLKD Sbjct: 64 EPVRLKAILADPGVLKIFHFARFDLAVLFRALGVMPAPVYCTKVASKLARTYTDRHGLKD 123 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++EL+G+++SK QQSSDW A+ LS Q+ YAASDV+HLHA R + L R GRS++A Sbjct: 124 VVRELVGVDLSKQQQSSDWGAETLSQAQIDYAASDVLHLHAARERLDLMLAREGRSEMAR 183 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LDL GW DIF+HS Sbjct: 184 ACFDFLPTRARLDLAGWPETDIFAHS 209 >gi|254466427|ref|ZP_05079838.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I] gi|206687335|gb|EDZ47817.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I] Length = 204 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 105/185 (56%), Positives = 139/185 (75%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC++Q+S GDG I+++ GQ APNL ML D K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCVIQMSGGDGNAHIVQVEKGQTEAPNLCRMLEDPNVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA +++ FG PV+CTKIASRL RTYT++HGLK+ +ELLGI+ISK QQ SDW A Sbjct: 80 RFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQELLGIDISKQQQMSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 ++L++ QL YAASDV+HLH LR ++L R GRS++A +C +FL RA+LDL GW +D Sbjct: 140 EELTEAQLDYAASDVLHLHKLREALDKRLAREGRSEMAQACFDFLPMRAKLDLAGWPEID 199 Query: 203 IFSHS 207 IF+HS Sbjct: 200 IFAHS 204 >gi|197103637|ref|YP_002129014.1| ribonuclease D [Phenylobacterium zucineum HLK1] gi|196477057|gb|ACG76585.1| ribonuclease D [Phenylobacterium zucineum HLK1] Length = 205 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 115/207 (55%), Positives = 150/207 (72%), Gaps = 2/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MTT VHEGD+PA+ A ++A+D+ET+GL RD LC+VQLS G G ++++ Sbjct: 1 MTTF-VHEGDLPADVLAS-ASSVAIDSETMGLRLGRDPLCVVQLSDGGGDAHLVKLDRTT 58 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNL +L D KIFH+GRFDIA+ + GV PV+CTKIAS++ RTYT++HGLK Sbjct: 59 YDAPNLKRLLTDPAVTKIFHFGRFDIAMFWLHLGVLTAPVYCTKIASKIARTYTDRHGLK 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D KELLG+++SKAQQSSDW A LSDEQ+ YAASDV+HLHAL+ + + L R GR LA Sbjct: 119 DISKELLGVDMSKAQQSSDWGAGKLSDEQVAYAASDVLHLHALKDRLQQMLVREGRDSLA 178 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LD+ GWE+VDIF+HS Sbjct: 179 QACFDFLPHRAVLDVAGWEDVDIFAHS 205 >gi|126738420|ref|ZP_01754125.1| exonuclease, putative [Roseobacter sp. SK209-2-6] gi|126720219|gb|EBA16925.1| exonuclease, putative [Roseobacter sp. SK209-2-6] Length = 204 Score = 230 bits (587), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 109/202 (53%), Positives = 147/202 (72%), Gaps = 2/202 (0%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +++ D+P + V +A+D ET+GL P RDRLC++Q+S GDG II++A GQ APN Sbjct: 5 LYQNDLPDDLKLGPV--VAIDCETMGLNPHRDRLCVIQMSDGDGNAHIIQVAKGQSEAPN 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D + K+FH+GRFDIA ++ FG PV+CTKIASRL RTYT++HGLK+ +E Sbjct: 63 LCRLLEDPETLKLFHFGRFDIAAMYNAFGALSAPVYCTKIASRLVRTYTDRHGLKNLTQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 LLGI+ISK QQ SDW A+ L+D QL YAASDV+HLH LR ++L+R GR+++A +C + Sbjct: 123 LLGIDISKQQQMSDWGAEILTDAQLDYAASDVLHLHKLRKALNKRLEREGRTEMAQACFD 182 Query: 186 FLMDRAELDLLGWENVDIFSHS 207 FL RA+LDL GW DIF+HS Sbjct: 183 FLPMRAKLDLAGWPETDIFAHS 204 >gi|254476761|ref|ZP_05090147.1| 3'-5' exonuclease [Ruegeria sp. R11] gi|214031004|gb|EEB71839.1| 3'-5' exonuclease [Ruegeria sp. R11] Length = 204 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 105/185 (56%), Positives = 137/185 (74%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC++Q+S GDG I+++A GQ APNL ML D K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCVIQMSGGDGNAHIVQVAKGQTEAPNLCRMLEDPNVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA +++ FG PV+CTKIASRL RTYT++HGLK+ +EL+G++ISK QQ SDW A Sbjct: 80 RFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQELIGVDISKQQQMSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 LSD QL YAASDV+HLH LR ++L R GR+++A +C +FL RA+LDL GW D Sbjct: 140 AQLSDAQLDYAASDVLHLHRLRAALDKRLDREGRTEMAQACFDFLPMRAKLDLAGWPETD 199 Query: 203 IFSHS 207 IF+HS Sbjct: 200 IFAHS 204 >gi|163738084|ref|ZP_02145500.1| exonuclease, putative [Phaeobacter gallaeciensis BS107] gi|161388700|gb|EDQ13053.1| exonuclease, putative [Phaeobacter gallaeciensis BS107] Length = 204 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 106/185 (57%), Positives = 137/185 (74%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQLS GDG +++IA GQ APNL ML D K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCVVQLSGGDGNAHMVQIAKGQSEAPNLCAMLEDPNVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA +++ FG PV+CTKIASRL RTYT++HGL++ +EL+G++ISK QQ SDW A Sbjct: 80 RFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLRNLTQELIGVDISKQQQMSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 LSD QL YAASDV+HLH LR ++L R RS++A +C +FL RA+LDL GW + D Sbjct: 140 AQLSDAQLDYAASDVLHLHRLRAALDKRLDREDRSEMAQACFDFLPMRAKLDLAGWSDTD 199 Query: 203 IFSHS 207 IF+HS Sbjct: 200 IFAHS 204 >gi|294675670|ref|YP_003576285.1| ribonuclease D [Rhodobacter capsulatus SB 1003] gi|294474490|gb|ADE83878.1| ribonuclease D-1 [Rhodobacter capsulatus SB 1003] Length = 204 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 110/205 (53%), Positives = 147/205 (71%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H+ D+P V +A+DTET+GL PRRDRLC+VQ+S GDG +++IA GQ Sbjct: 2 TIHLHQNDLPEGLDLGPV--VAIDTETMGLDPRRDRLCLVQMSSGDGHAHLVQIAKGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 AP L ML D K EK+FH+ RFDIA L+ FGV PVFCTKIAS++ RT+T++HGLK Sbjct: 60 APRLCAMLADPKVEKLFHFARFDIAALYNAFGVVTAPVFCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L++L+G+++SK QQ+SDW A +L+ QL YAASDV++LH L+ +L R GR++LA + Sbjct: 120 LQDLVGVDVSKQQQTSDWGAAELTAAQLDYAASDVLYLHQLKAALVTRLAREGRTELAQA 179 Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206 C +FL RA LDL+GWE DIF H Sbjct: 180 CFDFLPARARLDLMGWEEPNDIFHH 204 >gi|163742520|ref|ZP_02149906.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10] gi|161384105|gb|EDQ08488.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10] Length = 226 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 106/185 (57%), Positives = 137/185 (74%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQLS GDG +++IA GQ APNL ML D K+FH+G Sbjct: 42 VAIDCETMGLNPHRDRLCVVQLSGGDGNAHMVQIAKGQSEAPNLCAMLEDLNVLKLFHFG 101 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA +++ FG PV+CTKIASRL RTYT++HGL++ +EL+G++ISK QQ SDW A Sbjct: 102 RFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLRNLTQELIGVDISKQQQMSDWGA 161 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 LSD QL YAASDV+HLH LR ++L R RS++A +C +FL RA+LDL GW + D Sbjct: 162 AQLSDAQLDYAASDVLHLHRLRAALDKRLDREDRSEMAQACFDFLPMRAKLDLAGWSDTD 221 Query: 203 IFSHS 207 IF+HS Sbjct: 222 IFAHS 226 >gi|159046129|ref|YP_001534923.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12] gi|157913889|gb|ABV95322.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12] Length = 203 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 113/204 (55%), Positives = 141/204 (69%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T +H D+P V +A+DTET+GL+P RDRLC+VQLS GDG +++IA GQ Sbjct: 2 TNHLHSHDLPDGLDLGPV--VAIDTETMGLVPARDRLCVVQLSSGDGDAHMVQIAQGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K K+FHY RFD+A L FGVR P++CTKIAS+L RTYT++HGLK Sbjct: 60 APNLTRMLTDPKVLKLFHYARFDVAALENAFGVRTAPIYCTKIASKLVRTYTDRHGLKAL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L E+LG+++SKAQQSSDW A LS QL YAASDV++LH L+ L R GR++LA + Sbjct: 120 LSEVLGVDVSKAQQSSDWGAPTLSAAQLDYAASDVLYLHRLKEALDGMLAREGRTELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL RA LDL GW +DIF H Sbjct: 180 CFEFLPTRARLDLGGWSEIDIFHH 203 >gi|99079868|ref|YP_612022.1| 3'-5' exonuclease [Ruegeria sp. TM1040] gi|99036148|gb|ABF62760.1| 3'-5' exonuclease [Ruegeria sp. TM1040] Length = 204 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 107/185 (57%), Positives = 137/185 (74%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQ+S GDG +++IA GQ +APNL ML + K+FHYG Sbjct: 20 VAIDCETMGLNPHRDRLCVVQMSSGDGDAHLVQIAKGQTDAPNLTAMLTNPDVLKLFHYG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA L++ FG PV+CTKIASRL RTYT++HGLK+ ++LLG +ISK QQ SDW A Sbjct: 80 RFDIAALYHRFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQDLLGQDISKQQQMSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 + L+ Q+ YAASDV+HLH LR ++L R GRSDLA +C +FL RA LDL GW + D Sbjct: 140 ETLTRAQMDYAASDVLHLHRLRDALDQRLVREGRSDLAQACFDFLPTRARLDLAGWPDTD 199 Query: 203 IFSHS 207 IF+HS Sbjct: 200 IFAHS 204 >gi|110677766|ref|YP_680773.1| 3'- 5' exonuclease family protein, putative [Roseobacter denitrificans OCh 114] gi|109453882|gb|ABG30087.1| 3'- 5' exonuclease family protein, putative [Roseobacter denitrificans OCh 114] Length = 248 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 107/185 (57%), Positives = 137/185 (74%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQLS GDG +I+IA GQ APNL +L D K K+FH+G Sbjct: 64 VAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTEAPNLCKLLEDPKVLKLFHFG 123 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA + FG PV+CTKIASRL RTYT++HGL L+ELL I+ISK QQSSDW A Sbjct: 124 RFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKLLQELLAIDISKQQQSSDWGA 183 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 + L+D Q++YAASDV++LH LR + L+R GR + A +C +FL RA+LDL+GW + D Sbjct: 184 ETLTDAQIEYAASDVLYLHQLREALNKMLEREGRMETAQACFDFLPMRAKLDLMGWPDTD 243 Query: 203 IFSHS 207 IF+HS Sbjct: 244 IFAHS 248 >gi|56695010|ref|YP_165357.1| exonuclease, putative [Ruegeria pomeroyi DSS-3] gi|56676747|gb|AAV93413.1| exonuclease, putative [Ruegeria pomeroyi DSS-3] Length = 204 Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 106/185 (57%), Positives = 137/185 (74%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC++Q+S GDG I+++ GQ APNL ML + + K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCVIQMSGGDGNTHIVQVEKGQTAAPNLCAMLENPEVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA L++ FG PV+CTKIASRL RTYT++HGLK+ +ELLG++ISK QQ SDW A Sbjct: 80 RFDIAALYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLCQELLGVDISKQQQMSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 + LS+ QL YAASDV++LH LR +L R GR+DLA SC +FL RA LDL+GW D Sbjct: 140 ETLSEAQLDYAASDVLYLHRLREALDGRLAREGRADLAQSCFDFLPTRARLDLVGWPETD 199 Query: 203 IFSHS 207 IF+HS Sbjct: 200 IFAHS 204 >gi|73667429|ref|YP_303445.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] gi|72394570|gb|AAZ68847.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] Length = 216 Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 110/204 (53%), Positives = 145/204 (71%), Gaps = 3/204 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + VH+ D+P + DA+A+DTET+GL+ RRDRLC+VQL+ G V +++ + G A Sbjct: 15 VFVHDCDLPN--GLNFEDAVAIDTETMGLVCRRDRLCLVQLADSSGNVHLVKFS-GNYQA 71 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNLV +L D KIFH+ RFDIAV+ Y G+ P +CTKIAS+L RTYT+ HGLK+ Sbjct: 72 PNLVSVLSDPNIIKIFHFARFDIAVMRYYLGMWANPCYCTKIASKLVRTYTDHHGLKELC 131 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELLG+ ++K QQSSDW + L+ EQL YAASDV++LHAL+ + LQR + +LA +C Sbjct: 132 YELLGVKLNKMQQSSDWGRESLTSEQLNYAASDVIYLHALKSKLDAMLQRENKRELAAAC 191 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 FL RA+LDLLGWENVDIFSHS Sbjct: 192 FKFLQTRAQLDLLGWENVDIFSHS 215 >gi|218530671|ref|YP_002421487.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4] gi|218522974|gb|ACK83559.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4] Length = 209 Score = 228 bits (580), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 109/206 (52%), Positives = 146/206 (70%), Gaps = 2/206 (0%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + IR+H D+P + A AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I Sbjct: 6 SRIRLHHCDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPSDP 63 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L +L D KIFH+ RFD+AVLF FGV PV+CTKIAS+L RTYT++HGLKD Sbjct: 64 APERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++EL+G+++SK QQSSDW A LS Q+ YAASDV+HLHA R + L R GR+++A Sbjct: 124 VVRELVGVDLSKQQQSSDWGAATLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQ 183 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL R++LDL GW +DIF+H+ Sbjct: 184 ACFDFLPTRSKLDLAGWPEIDIFAHA 209 >gi|220925751|ref|YP_002501053.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060] gi|219950358|gb|ACL60750.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060] Length = 204 Score = 227 bits (579), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 115/205 (56%), Positives = 144/205 (70%), Gaps = 6/205 (2%) Query: 5 RVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 R+H GD+P + YV AIAVDTETLGL P RDRLC+VQ+S GDG D+++I Sbjct: 4 RLHCGDLPDD----YVPGPAIAVDTETLGLEPHRDRLCVVQISHGDGEADVVQIPKIGPE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L D KIFHY RFD+AVL++ GV PV+CTK+ASRL RTYT++HGLKD Sbjct: 60 PVVLKRVLTDPAVTKIFHYARFDLAVLYHRLGVMPGPVYCTKVASRLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLG+ +SK QQSSDW AD L+ Q+ YAASDV+HLHALR + L R R+D+A + Sbjct: 120 VRELLGVELSKQQQSSDWGADTLTPAQIDYAASDVLHLHALRAKLDAMLAREERTDMAEA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDLLGW+ VDI +HS Sbjct: 180 CFAFLPTRARLDLLGWDEVDILAHS 204 >gi|86136835|ref|ZP_01055413.1| exonuclease, putative [Roseobacter sp. MED193] gi|85826159|gb|EAQ46356.1| exonuclease, putative [Roseobacter sp. MED193] Length = 204 Score = 227 bits (579), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 106/202 (52%), Positives = 146/202 (72%), Gaps = 2/202 (0%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +++ D+P + V +A+D ET+GL P RDRLC++QLS GDG I+++A GQ APN Sbjct: 5 LYQNDLPDDLKLGPV--VAIDCETMGLNPHRDRLCVIQLSDGDGNAHIVQVAKGQTEAPN 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L ML D + K+FH+GRFDIA +++ FG PV+CTKIASRL RTYT++HGLK+ +E Sbjct: 63 LCAMLEDPETLKLFHFGRFDIAAMYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLTQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 L+G++ISK QQ SDW A L++ QL YAASDV++LH LR ++L+R GR ++A +C + Sbjct: 123 LIGVDISKQQQMSDWGAKVLTEAQLDYAASDVLYLHRLREALNKRLEREGRMEMAQACFD 182 Query: 186 FLMDRAELDLLGWENVDIFSHS 207 FL RA+LDL GW DIF+HS Sbjct: 183 FLPMRAKLDLAGWPETDIFAHS 204 >gi|89052719|ref|YP_508170.1| 3'-5' exonuclease [Jannaschia sp. CCS1] gi|88862268|gb|ABD53145.1| 3'-5' exonuclease [Jannaschia sp. CCS1] Length = 203 Score = 227 bits (578), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 103/184 (55%), Positives = 139/184 (75%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC++QLS GDG ++++A GQ APNL +L D K+FH+G Sbjct: 20 VAIDCETMGLHPHRDRLCVIQLSDGDGNAHLVQVAKGQTAAPNLCALLEDPNTLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA +++ FG PV+CTKIAS+L RTYT++HGLK+ L+ELLGI+ISK QQSSDW A Sbjct: 80 RFDIAAMYHAFGALTAPVYCTKIASKLVRTYTDRHGLKNLLQELLGIDISKQQQSSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 D L++ Q+ YAASDV++LH ++ + L R GR++LA +C +FL RA+LDL GW +D Sbjct: 140 DSLTEAQVDYAASDVLYLHGVKDKLDVMLAREGRTELAQACFDFLPMRAKLDLAGWPEMD 199 Query: 203 IFSH 206 IFSH Sbjct: 200 IFSH 203 >gi|332187924|ref|ZP_08389657.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17] gi|332012085|gb|EGI54157.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17] Length = 206 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 112/206 (54%), Positives = 150/206 (72%), Gaps = 2/206 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-GQK 61 T+ +HE DIPA+ A AIAVDTET+GL+ RDRLC+VQLS G ++R + Sbjct: 2 TVHLHEEDIPADLFAPGA-AIAVDTETMGLITPRDRLCVVQLSDGGPDEHLVRFSPDSDY 60 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D R K++H+GRFDIA + + GV PV+CTKIASRL RTYT++HGLK+ Sbjct: 61 AAPNLRALLADPARLKLYHFGRFDIAAIRHYLGVVAAPVYCTKIASRLIRTYTDRHGLKE 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLGI +SKAQQSSDW A +LSD Q +YAASDV +LH ++++ ++L+R GR +LA Sbjct: 121 LVRELLGIELSKAQQSSDWGAPELSDAQREYAASDVRYLHRMKVELDKRLEREGRMELAQ 180 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RAELDL GW +DIF+H+ Sbjct: 181 ACFDFLPARAELDLAGWPEIDIFAHA 206 >gi|315497170|ref|YP_004085974.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48] gi|315415182|gb|ADU11823.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48] Length = 206 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 111/205 (54%), Positives = 142/205 (69%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI HEGD+P V +A+D+ET+GL RD LC+VQLS GDG ++R+ + Sbjct: 2 TIHYHEGDLPNGLNLGAV--VAIDSETMGLRFGRDDLCVVQLSAGDGDAHVVRLNRPAYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +L DEK K+FH+GRFDI + GV PV+CTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKALLTDEKVLKLFHFGRFDIGMFLLHLGVVTAPVYCTKIASKLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL ++ISKAQQSSDW A L+ EQL YAASDV+HLH LR + L R GR++LA Sbjct: 120 VRELLSVDISKAQQSSDWGAQTLTPEQLAYAASDVLHLHTLREKLDTMLAREGRTELAQG 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL R +LDL GWE+ DIF+HS Sbjct: 180 CFDFLPHRVKLDLAGWEDTDIFAHS 204 >gi|89067364|ref|ZP_01154877.1| exonuclease, putative [Oceanicola granulosus HTCC2516] gi|89046933|gb|EAR52987.1| exonuclease, putative [Oceanicola granulosus HTCC2516] Length = 203 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 105/184 (57%), Positives = 138/184 (75%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQ+S GDG ++++A GQ +APNLV ML + K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCVVQMSGGDGHAHLVQVAKGQTSAPNLVAMLENPDVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA L FG R PV+CTKIAS+L RT+T++HGLK L++L+G+++SK QQ SDW A Sbjct: 80 RFDIAALMNAFGARTAPVYCTKIASKLVRTFTDRHGLKVLLQDLVGVDVSKHQQQSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 + LSD QL YAASDV+HLH LR + E L R GR+ +A +C +FL RA+LDL GW + D Sbjct: 140 ETLSDAQLDYAASDVLHLHRLREKLDEMLAREGRTMIAQACFDFLPTRAQLDLAGWPDQD 199 Query: 203 IFSH 206 IFSH Sbjct: 200 IFSH 203 >gi|126463573|ref|YP_001044687.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029] gi|126105237|gb|ABN77915.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029] Length = 204 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 113/205 (55%), Positives = 147/205 (71%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H D+P A V +A+DTET+GL PRRDRLC+VQLS GDG +++I GQ + Sbjct: 2 TIHLHRNDLPDGLALGPV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA L FGVR PV+CTKIAS++ RT+T++HGLK Sbjct: 60 APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G+++SK QQ+SDW A +L+D Q YAASDV+HLH L+ + +L R GR +LA Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179 Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206 C +FL RAELDL+GW E DIF H Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204 >gi|254510165|ref|ZP_05122232.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11] gi|221533876|gb|EEE36864.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11] Length = 204 Score = 225 bits (573), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 103/185 (55%), Positives = 137/185 (74%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC++Q+S GDG I+++ GQ +APNL ML D K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCVIQMSGGDGDCHIVQVEKGQASAPNLCAMLEDPNILKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA +++ FG PV+CTKIASRL RTYT++HGLK+ +ELLG++ISK QQ SDW A Sbjct: 80 RFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLCQELLGVDISKQQQMSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 + L+D QL YAASDV++LH LR +L R GR+++A +C +FL RA+LDL GW D Sbjct: 140 ETLTDAQLDYAASDVLYLHRLREALDGRLAREGRTEVAQACFDFLPTRAKLDLAGWPETD 199 Query: 203 IFSHS 207 IF+HS Sbjct: 200 IFAHS 204 >gi|163733026|ref|ZP_02140470.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis Och 149] gi|161393561|gb|EDQ17886.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis Och 149] Length = 204 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 111/205 (54%), Positives = 141/205 (68%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T +V++ D+P +A+D ET+GL P RDRLC+VQLS GDG +I+IA GQ Sbjct: 2 THKVYKNDLPD--GLDLGPMVAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D K+FH+GRFDIA + FG PV+CTKIASRL RTYT++HGL Sbjct: 60 APNLCKLLEDPNVLKLFHFGRFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L+ELL I+ISK QQSSDW AD L+D Q+ YAASDV++LH LR L R GR + A + Sbjct: 120 LQELLNIDISKQQQSSDWGADTLTDAQIDYAASDVLYLHQLREALNTMLTREGRMETAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDL+GW + DIF+HS Sbjct: 180 CFDFLPMRAKLDLMGWPDTDIFAHS 204 >gi|312114054|ref|YP_004011650.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100] gi|311219183|gb|ADP70551.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100] Length = 204 Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI VH D+P + + ++A+DTETLGL P RDRLC+VQLS GDG +++ G + Sbjct: 2 TITVHLNDLPPDI--DFGASVAIDTETLGLKPHRDRLCVVQLSAGDGNAHLVQFEKGHYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +LV+ KIFH+GRFDIAV+ GV+ PV+CTKIA++L RT+T +HGLKD Sbjct: 60 APNLTALLVNPAVLKIFHFGRFDIAVMQQYLGVKTGPVYCTKIAAKLVRTFTERHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG+ +SK QQ+SDW L+ EQL YAASDV+HLHAL+ + L R GR++LA + Sbjct: 120 CRELLGVELSKQQQTSDWGQAKLTPEQLSYAASDVLHLHALKEKLDALLAREGRTELAAA 179 Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206 C FL RAELDL GW ++ D+F+H Sbjct: 180 CFGFLPYRAELDLKGWHDDADVFNH 204 >gi|260431736|ref|ZP_05785707.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157] gi|260415564|gb|EEX08823.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157] Length = 204 Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 103/185 (55%), Positives = 137/185 (74%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC++Q+S GDG I+++ GQ APNL ML + + K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCVIQMSGGDGHSHIVQVEKGQTEAPNLCAMLENPEVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA L++ FG PV+CTKIASRL RTYT++HGLK+ +ELLGI+ISK QQ SDW A Sbjct: 80 RFDIAALYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLCQELLGIDISKQQQMSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 + L++ QL YAASDV++LH LR +L+R GR+++A +C +FL RA LDL GW D Sbjct: 140 ETLTEAQLDYAASDVLYLHQLRAALDARLEREGRTEMAQACFDFLPMRARLDLAGWPETD 199 Query: 203 IFSHS 207 IF+HS Sbjct: 200 IFAHS 204 >gi|221640647|ref|YP_002526909.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131] gi|221161428|gb|ACM02408.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131] Length = 204 Score = 224 bits (570), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 112/205 (54%), Positives = 146/205 (71%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H D+P V +A+DTET+GL PRRDRLC+VQLS GDG +++I GQ + Sbjct: 2 TIHLHRSDLPDGLVLGPV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA L FGVR PV+CTKIAS++ RT+T++HGLK Sbjct: 60 APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G+++SK QQ+SDW A +L+D Q YAASDV+HLH L+ + +L R GR +LA Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179 Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206 C +FL RAELDL+GW E DIF H Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204 >gi|77464733|ref|YP_354237.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1] gi|77389151|gb|ABA80336.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1] Length = 204 Score = 224 bits (570), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 112/205 (54%), Positives = 146/205 (71%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H D+P V +A+DTET+GL PRRDRLC+VQLS GDG +++I GQ + Sbjct: 2 TIHLHRNDLPDGLVLGPV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA L FGVR PV+CTKIAS++ RT+T++HGLK Sbjct: 60 APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G+++SK QQ+SDW A +L+D Q YAASDV+HLH L+ + +L R GR +LA Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179 Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206 C +FL RAELDL+GW E DIF H Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204 >gi|259417301|ref|ZP_05741220.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B] gi|259346207|gb|EEW58021.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B] Length = 204 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 109/202 (53%), Positives = 141/202 (69%), Gaps = 2/202 (0%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +++ D+P V +A+D ET+GL P RDRLC+VQ+S GDG +++I+ Q APN Sbjct: 5 LYQNDLPDSVDLGPV--VAIDCETMGLNPHRDRLCVVQMSGGDGDAHLVQISKDQTEAPN 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L ML + K+FHYGRFDIA L++ FG PV+CTKIASRL RTYT++HGLK+ ++ Sbjct: 63 LTSMLTNPDVLKLFHYGRFDIAALYHRFGALTAPVYCTKIASRLVRTYTDRHGLKNLTQD 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 LLG +ISK QQ SDW AD L+ Q+ YAASDV+HLH LR +L R GRSDLA +C + Sbjct: 123 LLGQDISKQQQMSDWGADTLTRAQMDYAASDVLHLHRLRGALDLRLAREGRSDLAQACFD 182 Query: 186 FLMDRAELDLLGWENVDIFSHS 207 FL RA LDL GW + DIF+HS Sbjct: 183 FLPTRARLDLAGWPDTDIFAHS 204 >gi|332559626|ref|ZP_08413948.1| ribonuclease D [Rhodobacter sphaeroides WS8N] gi|332277338|gb|EGJ22653.1| ribonuclease D [Rhodobacter sphaeroides WS8N] Length = 204 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 112/205 (54%), Positives = 146/205 (71%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H D+P V +A+DTET+GL PRRDRLC+VQLS GDG +++I GQ + Sbjct: 2 TIHLHRNDLPDGLVLGPV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLLQIERGQTS 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA L FGVR PV+CTKIAS++ RT+T++HGLK Sbjct: 60 APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G+++SK QQ+SDW A +L+D Q YAASDV+HLH L+ + +L R GR +LA Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179 Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206 C +FL RAELDL+GW E DIF H Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204 >gi|83855386|ref|ZP_00948916.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1] gi|83941910|ref|ZP_00954372.1| exonuclease, putative [Sulfitobacter sp. EE-36] gi|83843229|gb|EAP82396.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1] gi|83847730|gb|EAP85605.1| exonuclease, putative [Sulfitobacter sp. EE-36] Length = 204 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 110/205 (53%), Positives = 139/205 (67%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T V++ D+P +A+D ET+GL P RDRLC+VQLS GDG +++IA GQ Sbjct: 2 TNTVYQNDLPD--GLNLGPMVAIDCETMGLHPHRDRLCVVQLSGGDGNAHLVQIAKGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D K+FHYGRFDIA L TFG + PV+CTKIASRL RTYT++HGL Sbjct: 60 APNLCALLEDPHVLKLFHYGRFDIAALLNTFGAKAAPVYCTKIASRLVRTYTDRHGLAKL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL ++ISK QQSSDW A+ L+ Q+ YAASDV+HLH LR + L R GR +LA + Sbjct: 120 CQELLSVDISKQQQSSDWGAETLTKAQIDYAASDVLHLHKLRDVLNQMLIREGRIELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDL GW DIF+H+ Sbjct: 180 CFEFLPTRAQLDLDGWPETDIFAHA 204 >gi|114568663|ref|YP_755343.1| 3'-5' exonuclease [Maricaulis maris MCS10] gi|114339125|gb|ABI64405.1| 3'-5' exonuclease [Maricaulis maris MCS10] Length = 204 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 144/205 (70%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ H+GD+PA+ + +AVDTETLGL RD LC+VQLS GDG ++++ + Sbjct: 2 TVHYHKGDLPADIDLGPI--VAVDTETLGLSLTRDMLCVVQLSAGDGDAHVVQMNRADYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +L D EKI H+ RFD+A++ GV + PVFCTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKRVLADPAVEKILHFARFDVAMVDKYLGVTMAPVFCTKIASKLVRTYTDRHGLKDV 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G ++K QQSSDW AD+LS QL YAASDV+HLH LR + L+R GR+DLA + Sbjct: 120 TRELVGAEMNKQQQSSDWGADELSPAQLDYAASDVLHLHKLREKLGMMLEREGRTDLAKA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDL GW +DIF+HS Sbjct: 180 CFDFLPTRAKLDLAGWPEIDIFAHS 204 >gi|146278808|ref|YP_001168967.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025] gi|145557049|gb|ABP71662.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025] Length = 204 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 112/205 (54%), Positives = 145/205 (70%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H D+P V +A+DTET+GL PRRDRLC+VQLS GDG +++I GQ Sbjct: 2 TIHLHRNDLPDGLDLGRV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTR 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA L FGVR PV+CTKIAS++ RT+T++HGLK Sbjct: 60 APNLERLLTDPQVLKLFHFGRFDIAALQRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G+++SK QQ+SDW A +L+D Q YAASDV+HLH L+ + +L R GR +LA Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKEELEARLLREGRMELAQR 179 Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206 C +FL RAELDL+GW E DIF H Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204 >gi|114764076|ref|ZP_01443315.1| exonuclease, putative [Pelagibaca bermudensis HTCC2601] gi|114543434|gb|EAU46449.1| exonuclease, putative [Roseovarius sp. HTCC2601] Length = 204 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/202 (54%), Positives = 140/202 (69%), Gaps = 2/202 (0%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +++GD+P V +A+D ET+GL P RDRLC+VQLS GDG ++++A GQ APN Sbjct: 5 LYKGDLPDGLDLGPV--VAIDCETMGLEPHRDRLCVVQLSGGDGNAHLVQVAKGQTEAPN 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L DE K+FHYGRFDIA ++ FG PV+CTKIASR+ RTYT++HGLK +E Sbjct: 63 LCRLLRDECVLKLFHYGRFDIAAMYNAFGALAAPVYCTKIASRMVRTYTDRHGLKTLTQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 LL ++ISK QQSSDW A+ L++ Q YAASDV+HLH LR L R GRS LA SC + Sbjct: 123 LLSVDISKQQQSSDWGAETLTEAQRDYAASDVLHLHKLREALDGMLAREGRSALAQSCFD 182 Query: 186 FLMDRAELDLLGWENVDIFSHS 207 FL RA LDL GW DIF+HS Sbjct: 183 FLPTRALLDLEGWPGTDIFAHS 204 >gi|296115075|ref|ZP_06833717.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769] gi|295978412|gb|EFG85148.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769] Length = 215 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 107/206 (51%), Positives = 144/206 (69%), Gaps = 4/206 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI H GD+P + + A+AVDTET+GL P RDRLC+VQLS GDG ++++ AG Sbjct: 9 TIHFHRGDLPHDVV--FSGAVAVDTETMGLNPHRDRLCLVQLSDGDGHAHLVQVPAGATA 66 Query: 63 A--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A PN++ +L D K+ H+ RFD+A+L YTFG+ V P CTKIAS+L RTYT +HGL Sbjct: 67 ADFPNMLAVLTDPSVTKLMHFARFDVAILQYTFGITVAPCICTKIASKLVRTYTERHGLA 126 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +ELLG+ +SK QQSSDW A DL+ EQ+ YAASDV++LHAL + L R GR +LA Sbjct: 127 HLCRELLGVELSKQQQSSDWGAPDLTPEQMTYAASDVLYLHALWARLEALLVREGRRELA 186 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C +F+ RA LD+LG+E+ D+F+H Sbjct: 187 QACYDFMPTRARLDILGYEDPDLFAH 212 >gi|329847152|ref|ZP_08262180.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19] gi|328842215|gb|EGF91784.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19] Length = 206 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 111/205 (54%), Positives = 143/205 (69%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ HEGD+PA +IA+D+ET+GL RD LC+VQLS GDG ++R+ + Sbjct: 2 TVFYHEGDLPA--GLDLGKSIALDSETMGLRFGRDDLCVVQLSAGDGHAHVVRLNRPAYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +LVD K+FHYGRFDI + GV PV+CTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKALLVDPSVLKLFHYGRFDIGMFALHLGVDTSPVYCTKIASKLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G+++SKAQQSSDW A L+ EQL YAASDV+HLHAL+ + L R GRS LA + Sbjct: 120 SRELVGVDMSKAQQSSDWGAATLTPEQLAYAASDVLHLHALKDKLDAMLAREGRSALAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL R +LDL GWE+ DIF+HS Sbjct: 180 CFDFLPQRVKLDLAGWEDCDIFAHS 204 >gi|163794941|ref|ZP_02188910.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199] gi|159179760|gb|EDP64287.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199] Length = 203 Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 107/204 (52%), Positives = 144/204 (70%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ +H GD+P V +A+D+ET+GL P RDRLC+VQ S GDGT +++ A G+ + Sbjct: 2 TVTLHHGDLPDGLDLGSV--VAIDSETMGLRPIRDRLCVVQFSSGDGTAHLVQFAPGEYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K+FH+ RFD+AVL GV P++CTKIAS+L RTYT++HGLKD Sbjct: 60 APNLTRMLTDPDVLKLFHFARFDVAVLQAFLGVATAPIYCTKIASKLVRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G+++SK QQSSDW A +L+ EQL YAASDV+HLHAL+ + L R GR+ +A Sbjct: 120 CRELIGVDLSKQQQSSDWGAAELTAEQLAYAASDVLHLHALKDRLDIMLAREGRTGIAAD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL RA LDL+G+ + DIF+H Sbjct: 180 CFRFLGTRAALDLIGYADEDIFAH 203 >gi|167648909|ref|YP_001686572.1| 3'-5' exonuclease [Caulobacter sp. K31] gi|167351339|gb|ABZ74074.1| 3'-5' exonuclease [Caulobacter sp. K31] Length = 205 Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 110/202 (54%), Positives = 140/202 (69%), Gaps = 1/202 (0%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +HEGD+P A AIA+D+ET+GL RD LC+VQLS GDG ++R+ +APN Sbjct: 5 LHEGDLPDGVFAGAA-AIAIDSETMGLRLGRDPLCVVQLSSGDGDAHVVRLDRATYDAPN 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K+FH+GRFDIA+ GV PV+CTKIAS+L RTYT++HGLKD +E Sbjct: 64 LKRLLTDPSVVKLFHFGRFDIAMFLLHLGVMTAPVYCTKIASKLARTYTDRHGLKDVTRE 123 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 L+G+ +SK QQSSDW A LS EQL YAASDV+HLHALR + L R GR LA + + Sbjct: 124 LVGVELSKVQQSSDWGAATLSPEQLAYAASDVLHLHALRERLNAMLVREGRMQLAQAAFD 183 Query: 186 FLMDRAELDLLGWENVDIFSHS 207 +L RA LDL GWE+VDIF+H+ Sbjct: 184 YLPHRAALDLAGWEDVDIFAHT 205 >gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510] gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510] Length = 208 Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 107/206 (51%), Positives = 144/206 (69%), Gaps = 3/206 (1%) Query: 4 IRVHEGDIPAE---CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 I +H+GD+P A + +A+DTET+GL P RDRLC+VQLS GDG V +++ G+ Sbjct: 3 IDLHDGDLPDGLDLAAGARDNCVAIDTETMGLNPHRDRLCLVQLSAGDGAVHLVQFRPGR 62 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 APNL +L D K+FH+ RFD+AV+ GV RPV+CTK+AS+L RT+T++HGLK Sbjct: 63 YEAPNLKRLLTDPGVTKLFHFARFDVAVMKAYLGVDCRPVYCTKVASKLVRTFTDRHGLK 122 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D K+LLG+ ISK QQSSDW A +L+ +Q++YAASDV+HLH L+ + L R GR+ LA Sbjct: 123 DLCKDLLGVEISKQQQSSDWGAPELTTDQMKYAASDVLHLHDLKAKLDVMLAREGRTHLA 182 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL R ELDL GWE DI +H Sbjct: 183 QACFDFLPARGELDLGGWETPDILAH 208 >gi|16127833|ref|NP_422397.1| ribonuclease D [Caulobacter crescentus CB15] gi|221236653|ref|YP_002519090.1| ribonuclease D [Caulobacter crescentus NA1000] gi|13425349|gb|AAK25565.1| ribonuclease D, putative [Caulobacter crescentus CB15] gi|220965826|gb|ACL97182.1| ribonuclease D [Caulobacter crescentus NA1000] Length = 205 Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 109/202 (53%), Positives = 141/202 (69%), Gaps = 1/202 (0%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 VHEGD+P A + IA+D+ET+GL RRD LC+VQLS GDG ++R++ + PN Sbjct: 5 VHEGDLPDGVFAD-AEIIAIDSETMGLRLRRDPLCVVQLSAGDGDAHVVRLSRPDYDCPN 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L + K K+FH+GRFDIA+ GV PV+CTKIAS+L RTYT++HGLKD +E Sbjct: 64 LKALLTNPKVLKLFHFGRFDIAMFELHLGVVTAPVYCTKIASKLARTYTDRHGLKDVTRE 123 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 LLG+ +SK QQSSDW A LS +Q+ YAASDV+HLH LRL+ L+R GR LA + Sbjct: 124 LLGVELSKVQQSSDWGAPSLSVDQVAYAASDVLHLHGLRLKLNAMLEREGRMALAQHAFD 183 Query: 186 FLMDRAELDLLGWENVDIFSHS 207 +L RA LDL GWE +DIF+HS Sbjct: 184 YLPHRASLDLAGWEEMDIFAHS 205 >gi|260428903|ref|ZP_05782880.1| 3'-5' exonuclease [Citreicella sp. SE45] gi|260419526|gb|EEX12779.1| 3'-5' exonuclease [Citreicella sp. SE45] Length = 204 Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 108/202 (53%), Positives = 143/202 (70%), Gaps = 2/202 (0%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +++GD+P V +A+D ET+GL P RDRLC+VQLS GDG ++++A GQ APN Sbjct: 5 LYKGDLPDGLDLGPV--VAIDCETMGLDPHRDRLCVVQLSGGDGNAHLVQVARGQTEAPN 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L DE K+FH+GRFDIA +++ FG PV+CTKIASR+ RTYT++HGLK +E Sbjct: 63 LCRLLRDETVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRMVRTYTDRHGLKALTQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 LL ++ISK QQSSDW A DL+ QL YAASDV++LH LR + L+R GR+ LA +C + Sbjct: 123 LLSVDISKQQQSSDWGAADLTAAQLDYAASDVLYLHQLRDRLNGMLEREGRTALAQACFD 182 Query: 186 FLMDRAELDLLGWENVDIFSHS 207 FL RA LDL GW DIF+H+ Sbjct: 183 FLPTRALLDLEGWPETDIFAHA 204 >gi|88608093|ref|YP_506413.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str. Miyayama] gi|88600262|gb|ABD45730.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str. Miyayama] Length = 206 Score = 220 bits (561), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 109/206 (52%), Positives = 143/206 (69%), Gaps = 2/206 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M ++EGD+PA+ A DAIA+DTE++GL+ RRDRLC+VQLS GDGT ++R Sbjct: 1 MNKYYIYEGDVPADFAPS--DAIAIDTESMGLVNRRDRLCLVQLSTGDGTAHLVRFNGTD 58 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +AP L +LVD KIFH+ RFDIA+L + GV +CTKIASRL RTYT+ H LK Sbjct: 59 YSAPRLKSLLVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLK 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + +LLG+ ++K +QSSDW + L+ EQ+ YAASDV++LHA++ L+R R +LA Sbjct: 119 ELCLDLLGVRLNKGKQSSDWGSTSLTREQMSYAASDVLYLHAIKEALDVMLKREKRIELA 178 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C FL RAELDLLGWEN DIFSH Sbjct: 179 RACFQFLPYRAELDLLGWENQDIFSH 204 >gi|255262197|ref|ZP_05341539.1| 3'-5' exonuclease [Thalassiobium sp. R2A62] gi|255104532|gb|EET47206.1| 3'-5' exonuclease [Thalassiobium sp. R2A62] Length = 203 Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 99/184 (53%), Positives = 135/184 (73%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC++Q+S GD II+++ GQ APNL ML + K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCVIQMSGGDSNAHIIQVSKGQTEAPNLTAMLTNPDVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA + FG PV+CTKIAS++ RTYT++HGLK+ L+EL+G++ISK QQSSDW + Sbjct: 80 RFDIAAMQNAFGAVTAPVYCTKIASKMVRTYTDRHGLKNLLQELIGVDISKQQQSSDWGS 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 L++ QL YAASDV++LH LR + +L R GR ++A +C +FL RA+LDL GW +D Sbjct: 140 QTLTNAQLDYAASDVLYLHKLRTELNARLVREGRMEMAQACFDFLPMRAQLDLEGWPEID 199 Query: 203 IFSH 206 IFSH Sbjct: 200 IFSH 203 >gi|254419186|ref|ZP_05032910.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3] gi|196185363|gb|EDX80339.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3] Length = 204 Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 105/205 (51%), Positives = 143/205 (69%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ +HEGD+P + +A+D+ET+GL RRD LC+VQLS GDG ++R+ + Sbjct: 2 TVYLHEGDLPDDL--DLGPDVAIDSETMGLRFRRDPLCVVQLSAGDGNAHVVRLNRPGYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +L D KIFH+GRFDI + GV RPV+CTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKRLLTDPAVTKIFHFGRFDIGMFLLHLGVETRPVYCTKIASKLARTYTDRHGLKDV 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E +G+++SKAQQSSDW A +L+ QL YAASDV++LHA R + L R GR++LA Sbjct: 120 VRETVGVDLSKAQQSSDWGAAELTQAQLDYAASDVLYLHAARAKLDLMLAREGRAELAAQ 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL R+ LDL GW+ +DIF+HS Sbjct: 180 CFDFLPTRSALDLAGWDEIDIFAHS 204 >gi|329888476|ref|ZP_08267074.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC 11568] gi|328847032|gb|EGF96594.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC 11568] Length = 204 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 108/205 (52%), Positives = 142/205 (69%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ HEGD+P +A+D+ET+GL RRD LC+VQLS GDG ++R+ + Sbjct: 2 TVYFHEGDLPD--GLDLGPQVAIDSETMGLRFRRDPLCVVQLSSGDGNAHVVRLNRPAYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +L D K KIFH+GRFDI + GV RPV+CTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKRLLTDPKVLKIFHFGRFDIGMFDLHLGVETRPVYCTKIASKLARTYTDRHGLKDV 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 KEL G+++SKAQQSSDW A +LS QL YAASDV++LHA+ + E L R GR +LA + Sbjct: 120 AKELAGVDMSKAQQSSDWGAAELSQAQLDYAASDVLYLHAIMNRLNEMLVREGRMELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL R+ LDL GW+ +DIF+H+ Sbjct: 180 CFDFLPVRSRLDLAGWDEIDIFAHA 204 >gi|254463169|ref|ZP_05076585.1| 3'-5' exonuclease [Rhodobacterales bacterium HTCC2083] gi|206679758|gb|EDZ44245.1| 3'-5' exonuclease [Rhodobacteraceae bacterium HTCC2083] Length = 203 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 107/204 (52%), Positives = 143/204 (70%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T +++ DIPA+ V +A+D ET+GL P RDRLC++Q+S GDG ++++A GQ Sbjct: 2 TNTLYQNDIPADLDLGPV--VAIDCETMGLHPHRDRLCVIQMSGGDGNAHLVQVAKGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K+FH+GRFDIA + FG PV+CTKIAS+L RTYT++HGLK+ Sbjct: 60 APNLCKMLTDPNVLKLFHFGRFDIAAMQNAFGAVTAPVYCTKIASKLIRTYTDRHGLKNL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L+ELL I+ISK QQSSDW + L++ QL+YAASDV++LH LR + ++L R R +A + Sbjct: 120 LQELLNIDISKQQQSSDWGSAKLTNAQLEYAASDVLYLHRLRTELNKRLIREDRMVIAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA LDL GW DIFSH Sbjct: 180 CFDFLPMRANLDLKGWPEQDIFSH 203 >gi|84684593|ref|ZP_01012494.1| exonuclease, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667572|gb|EAQ14041.1| exonuclease, putative [Rhodobacterales bacterium HTCC2654] Length = 203 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 103/184 (55%), Positives = 135/184 (73%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQ+S GDG ++++ GQ APNL ML D KIFH+G Sbjct: 20 VAIDCETMGLNPHRDRLCVVQMSGGDGHAHMVQVERGQTEAPNLTAMLTDPNVLKIFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA L FGV PV+CTKIAS+L RTYT++HGLK L+E+L I+ISK QQ +DW A Sbjct: 80 RFDIAALLNAFGVVTAPVYCTKIASKLIRTYTDRHGLKTLLEEILRIDISKYQQQTDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 +L++ QL YAASDV++LH LR + +L R GR++LA +C +FL RA+LDL GW + D Sbjct: 140 RELTEAQLDYAASDVLYLHRLREKLDGRLAREGRAELAQACFDFLPARAQLDLAGWPDTD 199 Query: 203 IFSH 206 IF+H Sbjct: 200 IFTH 203 >gi|296282123|ref|ZP_06860121.1| 3'-5' exonuclease [Citromicrobium bathyomarinum JL354] Length = 205 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/204 (53%), Positives = 143/204 (70%), Gaps = 3/204 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-N 62 + HE D+P A A+AVDTET+GL+ RRDRLC+VQ+S G G ++R + Sbjct: 3 VYFHEEDLPEGVLAE--GAVAVDTETMGLITRRDRLCLVQISDGKGDEHLVRFGVDSSFD 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D R K++H+GRFD+A + Y GV PVFCTKIAS+LTRTYT++HGLK Sbjct: 61 APNLKAVLADPARTKLYHFGRFDLAAIEYWLGVTAAPVFCTKIASKLTRTYTDRHGLKML 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + ELLG +ISK QQSSDW A ++D Q +YAASDV +LH LR F E+L R GR+++A + Sbjct: 121 VSELLGEDISKQQQSSDWGAPKINDAQREYAASDVRYLHRLRDIFEERLAREGRTEIAQA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA LD++GW + DIFSH Sbjct: 181 CFDFLPTRARLDIIGWPDTDIFSH 204 >gi|310817096|ref|YP_003965060.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25] gi|308755831|gb|ADO43760.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25] Length = 227 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 103/184 (55%), Positives = 134/184 (72%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IA+D ET+GL P RDRLC+VQ+S GDG +I+I+ GQ++APNL ML D K+FHYG Sbjct: 44 IAIDCETMGLNPHRDRLCLVQISGGDGNAHMIQISPGQRSAPNLARMLEDANILKLFHYG 103 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA +++ FG +PV+CTKIAS++ RTYT +HGLK L++L+G++ISK QQ SDW A Sbjct: 104 RFDIAAMYHAFGALAQPVYCTKIASKMVRTYTERHGLKFLLQDLIGVDISKHQQQSDWGA 163 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 L+ QL YAASDV++LH LR L R GR+ LA +C +FL RA LDL GW+ D Sbjct: 164 ASLTPAQLDYAASDVLYLHRLRAHLDALLAREGRTGLAQACFDFLPTRARLDLEGWQEND 223 Query: 203 IFSH 206 IF+H Sbjct: 224 IFAH 227 >gi|304320833|ref|YP_003854476.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis HTCC2503] gi|303299735|gb|ADM09334.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis HTCC2503] Length = 204 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 106/204 (51%), Positives = 141/204 (69%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +H D+PA+ R+ A+AVD+ETLGL P RDRLC+VQLS GDG ++ AG +A Sbjct: 3 IHLHRNDLPADI--RFDGAVAVDSETLGLNPLRDRLCVVQLSAGDGDAHLVTFDAGAYDA 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P+L +L D + KIFH+ RFD+AV + GV P++CTKIAS+L RTYT++HGLKD + Sbjct: 61 PHLKAVLSDPQLLKIFHFARFDVAVFKHWLGVDTTPIYCTKIASKLARTYTDRHGLKDVV 120 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +E+ G+ +SK QQSSDW+A +L++ Q YAASDV+HLHA+R + R GR L T+ Sbjct: 121 REMTGVELSKQQQSSDWAAAELTEAQRAYAASDVLHLHAVREGLDRMIDREGRRALLTAA 180 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 FL RA LDL GW DIF+HS Sbjct: 181 FAFLPTRAALDLAGWSETDIFAHS 204 >gi|119713543|gb|ABL97595.1| putative exonuclease [uncultured marine bacterium EB0_39F01] Length = 204 Score = 218 bits (556), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 99/185 (53%), Positives = 134/185 (72%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTET+GL P RDRLC++Q S GDG I++I APN+ +L+D+ + K+FH+ Sbjct: 20 VAIDTETMGLNPMRDRLCVIQFSSGDGNAHIVQIEPDAPQAPNICKILLDQNKVKLFHFA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA+L + F + + PV+CTKIAS+L RTYTN+HGLK+ L+E+L I ISK QQSSDW A Sbjct: 80 RFDIAILKHHFKINISPVYCTKIASKLVRTYTNKHGLKNLLREMLSIEISKQQQSSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 +L+ Q++YAASDV++LH L + L+R R ++A +C NFL RA LDL GW D Sbjct: 140 SELTKAQIEYAASDVLYLHKLMDKLNLNLKRENRYEIAEACFNFLPMRATLDLAGWSEDD 199 Query: 203 IFSHS 207 IFSHS Sbjct: 200 IFSHS 204 >gi|239787681|emb|CAX84189.1| 3\'-5\' exonuclease family protein [uncultured bacterium] Length = 202 Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 112/201 (55%), Positives = 139/201 (69%), Gaps = 3/201 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +H GD+P V IA+DTET+GL P RDRLC+VQLS GDG ++ G+ AP Sbjct: 5 LHHGDLPEGLDLGPV--IAIDTETMGLNPMRDRLCLVQLSSGDGDAHLVHFQ-GRYEAPR 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D R K+FHY RFDIA+L GV PV+CTKIASRLTRT T++HGLKD ++ Sbjct: 62 LKALLADHNRLKLFHYARFDIAMLARWLGVTCTPVYCTKIASRLTRTNTDKHGLKDLCRD 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 LLGI++SK QQ+SDW + DL+ EQ YAASDV+HLHAL+ + L+R GR LA SC + Sbjct: 122 LLGIDLSKQQQTSDWGSGDLTAEQQAYAASDVLHLHALKAKLDALLKREGRGALADSCYS 181 Query: 186 FLMDRAELDLLGWENVDIFSH 206 FL RA LDLLGW DIF+H Sbjct: 182 FLPTRAALDLLGWGEEDIFAH 202 >gi|295691424|ref|YP_003595117.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756] gi|295433327|gb|ADG12499.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756] Length = 205 Score = 218 bits (555), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 108/202 (53%), Positives = 140/202 (69%), Gaps = 1/202 (0%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 VHEGD+P A IA+D+ET+GL RD LC+VQLS GDG ++R++ + PN Sbjct: 5 VHEGDLPDGVFAG-ASIIAIDSETMGLRLGRDPLCVVQLSSGDGDAHVVRLSRPDYDCPN 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K+FH+GRFDIA+ GV PV+CTKIAS+L RTYT++HGLKD +E Sbjct: 64 LKALLTDPAILKLFHFGRFDIAMFQLHLGVVTAPVYCTKIASKLARTYTDRHGLKDVTRE 123 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 LLG+ +SKAQQSSDW + LS +Q+ YAASDV+HLH LR + L+R GR LA + + Sbjct: 124 LLGVELSKAQQSSDWGSASLSADQVAYAASDVLHLHGLRQKLNAMLEREGRMALAQAAFD 183 Query: 186 FLMDRAELDLLGWENVDIFSHS 207 +L RA LDL GWE+VDIF+HS Sbjct: 184 YLPHRASLDLAGWEDVDIFAHS 205 >gi|68171372|ref|ZP_00544766.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa] gi|88657845|ref|YP_507797.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str. Arkansas] gi|67772422|gb|AAY79412.1| ribonuclease D [Ehrlichia chaffeensis] gi|67999197|gb|EAM85853.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa] gi|88599302|gb|ABD44771.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str. Arkansas] Length = 204 Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 3/204 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + VH+ D+P ++ + +AVDTET+GL+ RRD+LC+VQL +G +++ G A Sbjct: 3 VFVHDCDLPN--GLKFENTVAVDTETMGLVCRRDKLCVVQLCDSNGETHLVKFL-GSYQA 59 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNLV +L D KIFH+ RFDIAV+ Y GV P +CTKIAS+L RTYT+ HGLK+ Sbjct: 60 PNLVSVLSDSSITKIFHFARFDIAVIRYYLGVWATPCYCTKIASKLVRTYTDHHGLKELC 119 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELL + ++K QQSSDW + L+ EQL YAASDV++LHAL+ + LQR + +LA SC Sbjct: 120 YELLNVKLNKMQQSSDWGKETLTSEQLNYAASDVIYLHALKNKLDAMLQRENKQELAASC 179 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 FL RA+LDLLGW+ VDIFSH+ Sbjct: 180 FGFLPTRAQLDLLGWDGVDIFSHA 203 >gi|254796888|ref|YP_003081725.1| ribonuclease D [Neorickettsia risticii str. Illinois] gi|254590124|gb|ACT69486.1| ribonuclease D [Neorickettsia risticii str. Illinois] Length = 216 Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 107/201 (53%), Positives = 141/201 (70%), Gaps = 2/201 (0%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 ++EGD+PA+ DAIAVDTE++GL+ RRDRLC+VQLS GDGT ++R +AP Sbjct: 16 IYEGDVPADFPLS--DAIAVDTESMGLVNRRDRLCLVQLSTGDGTAHLVRFNGTDYSAPR 73 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L ++VD KIFH+ RFDIA+L + GV +CTKIASRL RTYT+ H LK+ + Sbjct: 74 LKSLIVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLKELCSD 133 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 LLG+ ++K +QSSDW + L+ EQ+ YAASDV++LHA++ L+R R +LA +C Sbjct: 134 LLGVRLNKGKQSSDWGSASLTREQMSYAASDVLYLHAIKEALDVMLKREKRIELAQACFQ 193 Query: 186 FLMDRAELDLLGWENVDIFSH 206 FL RAELDLLGWEN DIFSH Sbjct: 194 FLPYRAELDLLGWENQDIFSH 214 >gi|114769797|ref|ZP_01447407.1| exonuclease, putative [alpha proteobacterium HTCC2255] gi|114549502|gb|EAU52384.1| exonuclease, putative [alpha proteobacterium HTCC2255] gi|161170293|gb|ABX59263.1| 5-exonuclease family protein [uncultured marine bacterium EB000_55B11] gi|297183821|gb|ADI19944.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 204 Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 99/185 (53%), Positives = 134/185 (72%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTET+GL P RDRLC++Q S GDG I++I APN+ +L+D+ + K+FH+ Sbjct: 20 VAIDTETMGLNPMRDRLCVIQFSSGDGHAHIVQIEPDAPQAPNICKILLDQNKVKLFHFA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA+L + F + + PV+CTKIAS+L RTYTN+HGLK+ L+E+L I ISK QQSSDW A Sbjct: 80 RFDIAILKHHFKINISPVYCTKIASKLVRTYTNKHGLKNLLREMLSIEISKQQQSSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 +L+ Q++YAASDV++LH L + L+R R ++A +C NFL RA LDL GW D Sbjct: 140 SELTKAQIEYAASDVLYLHKLMDKLNLNLKRENRYEIAEACFNFLPMRATLDLAGWSEDD 199 Query: 203 IFSHS 207 IFSHS Sbjct: 200 IFSHS 204 >gi|254450150|ref|ZP_05063587.1| 3'-5' exonuclease [Octadecabacter antarcticus 238] gi|198264556|gb|EDY88826.1| 3'-5' exonuclease [Octadecabacter antarcticus 238] Length = 203 Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 108/204 (52%), Positives = 141/204 (69%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T +++ D+P V +A+D ET+GL P RDRLC+VQLS GDG +I++A GQ Sbjct: 2 TNHLYQNDLPDGLDLGAV--VAIDCETMGLNPHRDRLCLVQLSGGDGNCHLIQVAGGQTT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA + FG PV+CTKIAS+L RTYT++HGLK+ Sbjct: 60 APNLCKVLADPQVLKLFHFGRFDIAAMLNAFGTVTAPVYCTKIASKLIRTYTDRHGLKNL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L+E L ++ISK QQ SDW AD LS QL YAASDV++LH LR + +L R R+D+A + Sbjct: 120 LQEFLRVDISKFQQQSDWGADQLSKAQLDYAASDVLYLHKLRDELNIRLARELRTDMAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA+LDL GW DIFSH Sbjct: 180 CFDFLPMRAQLDLAGWPEQDIFSH 203 >gi|302381884|ref|YP_003817707.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264] gi|302192512|gb|ADL00084.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264] Length = 204 Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 107/205 (52%), Positives = 144/205 (70%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ +HEGD+P + +AVD+ET+GL RRD LC+VQLS GDG ++R++ + Sbjct: 2 TVYLHEGDLPDDLD--LGPEVAVDSETMGLRFRRDPLCVVQLSSGDGDAHVVRLSRPDYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL ++ D KIFH+GRFDIA++ GV PV+CTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKRLMADRDVLKIFHFGRFDIAMVELHLGVETGPVYCTKIASKLARTYTDRHGLKDV 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +E+ GI++SKAQQSSDW A +LS QL YAASDV+HLH + + E L R GR +LA + Sbjct: 120 AREMAGIDLSKAQQSSDWGAAELSQAQLDYAASDVLHLHVIMRRLNEMLVREGRMELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA LDL GW+ +DIF+H+ Sbjct: 180 CFDFLPVRARLDLRGWDEMDIFAHT 204 >gi|126734481|ref|ZP_01750228.1| exonuclease, putative [Roseobacter sp. CCS2] gi|126717347|gb|EBA14211.1| exonuclease, putative [Roseobacter sp. CCS2] Length = 203 Score = 217 bits (553), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 101/184 (54%), Positives = 135/184 (73%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC++Q+S GDG ++++ GQ APNL ML + K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCLIQMSGGDGDCHLVQVTPGQTAAPNLCAMLENPDVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA L FG PV+CTKIAS+L RTYT++HGLK L++++GI+ISK QQ SDW A Sbjct: 80 RFDIAALLNAFGALTAPVYCTKIASKLVRTYTDRHGLKTLLQDMVGIDISKHQQQSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 +L+D QL YAASDV++LH L+ +F L R R+D+A SC +FL RA+LDL GW ++D Sbjct: 140 PNLTDAQLDYAASDVLYLHQLKEKFDVLLAREHRADVAQSCFDFLPTRAKLDLAGWPDID 199 Query: 203 IFSH 206 IFSH Sbjct: 200 IFSH 203 >gi|57239514|ref|YP_180650.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|58579496|ref|YP_197708.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|58617549|ref|YP_196748.1| putative ribonuclease D [Ehrlichia ruminantium str. Gardel] gi|57161593|emb|CAH58521.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden] gi|58417161|emb|CAI28274.1| Probable ribonuclease D [Ehrlichia ruminantium str. Gardel] gi|58418122|emb|CAI27326.1| Probable ribonuclease D [Ehrlichia ruminantium str. Welgevonden] Length = 205 Score = 217 bits (553), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 104/204 (50%), Positives = 141/204 (69%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I VH+ D+P + + +AVDTET+GL+ RRDRLC+VQ+S +G V +++ + + A Sbjct: 3 IFVHDYDLPD--GVEFGNTVAVDTETMGLVCRRDRLCLVQMSGSNGNVHLVKFPSTEYQA 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 NL +L D KIFH+ RFDI + Y G+ P +CTKIAS+L RTYT+ HGLK+ Sbjct: 61 SNLKKILSDLSITKIFHFARFDITAIRYYLGIWAIPCYCTKIASKLARTYTDHHGLKELC 120 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELLGI ++K QQSSDW + L+ EQL YAASDV+HLHAL+ + L+R + +LA SC Sbjct: 121 NELLGIKLNKVQQSSDWGKEVLTSEQLNYAASDVIHLHALKSKLDAMLERENKQELAKSC 180 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 +FL R +LDLLGW+NVDIFSH+ Sbjct: 181 FDFLPTRVQLDLLGWDNVDIFSHA 204 >gi|163745220|ref|ZP_02152580.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex HEL-45] gi|161382038|gb|EDQ06447.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex HEL-45] Length = 204 Score = 217 bits (552), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 102/185 (55%), Positives = 133/185 (71%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQLS GDG +++IA GQ APNL +L + K+FHYG Sbjct: 20 VAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQIAKGQTEAPNLCALLENPHVLKLFHYG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA + FG PV+CTKIASRL RTYT++HGL +ELL ++ISK QQSSDW A Sbjct: 80 RFDIAAMLNAFGATAAPVYCTKIASRLIRTYTDRHGLAKLCQELLSVDISKQQQSSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 +L+ Q+ YAASDV++LH LR + ++L R GR D+A +C +FL RA LDL GW + D Sbjct: 140 KELTQAQIDYAASDVLYLHRLRDELNKRLIREGRMDMAQACFDFLPMRARLDLEGWPDTD 199 Query: 203 IFSHS 207 IF+H+ Sbjct: 200 IFAHA 204 >gi|154250652|ref|YP_001411476.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1] gi|154154602|gb|ABS61819.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1] Length = 203 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 105/204 (51%), Positives = 140/204 (68%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + +H GD+P + + +++AVDTET+GL P RD+LC+VQLS GDG I+++ G N Sbjct: 2 AVTLHRGDLPEGLS--FGESVAVDTETMGLHPERDQLCVVQLSAGDGNAHIVQLDRGTYN 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 AP L ++ D KIFH+ RFD+A+L GV PV+CTKIAS+L RTYT++HGLKD Sbjct: 60 APRLRALMADPAILKIFHFARFDVAMLQRYLGVVTAPVYCTKIASKLVRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+ I++SK QQSSDW A L+D QL YAASDV+HLH ++ L R GR++LA + Sbjct: 120 ARELVNIDMSKQQQSSDWGAASLTDAQLSYAASDVLHLHEIKSVLDGMLAREGRTELARA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL RA LDL GW DIF+H Sbjct: 180 CFAFLPVRAALDLAGWPEEDIFAH 203 >gi|148555811|ref|YP_001263393.1| 3'-5' exonuclease [Sphingomonas wittichii RW1] gi|148501001|gb|ABQ69255.1| 3'-5' exonuclease [Sphingomonas wittichii RW1] Length = 205 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 107/205 (52%), Positives = 142/205 (69%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ +H+ D+PA+ +AVDTET+GL+ RDRLC+VQ+S G G ++R A G Sbjct: 2 TVHLHQEDLPADALG--PGPVAVDTETMGLITPRDRLCLVQISDGRGDEHLVRFAPGSDY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D R K++H+ RFD+A + + GV PV+CTK ASRL RTYT++HGLK+ Sbjct: 60 AAPNLRAVLADPARLKLYHFARFDLAAIRHYIGVMAAPVYCTKTASRLIRTYTDRHGLKE 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +SK QQSSDW A DLS+ Q YAASDV +LHA+R E+L R GR+ LA Sbjct: 120 LVRELLGQEVSKQQQSSDWGAPDLSEAQKDYAASDVRYLHAMRTILDERLAREGRTALAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RAELDL GW +DIF+H Sbjct: 180 ACFDFLPARAELDLAGWPEIDIFAH 204 >gi|294013112|ref|YP_003546572.1| ribonuclease D [Sphingobium japonicum UT26S] gi|292676442|dbj|BAI97960.1| ribonuclease D [Sphingobium japonicum UT26S] Length = 205 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 140/205 (68%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ HE D+P A IAVDTET+GL+ RDRLC+VQ+S G G ++R G Sbjct: 2 TVHFHEEDLPLGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGQGDEHLVRFNPGSDY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL L D R K++H+GRFDIA + + GV PV+CTKIASRL RTYT++HGLK+ Sbjct: 60 AAPNLRAALADPARLKLYHFGRFDIAAIRHYLGVVAAPVYCTKIASRLVRTYTDRHGLKE 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +SK QQSSDW LSD Q +YAASDV +LHAL+ + ++L R GR +LA Sbjct: 120 LVRELLGQELSKVQQSSDWGGPVLSDAQKEYAASDVRYLHALKAELDKRLAREGRMELAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RAELDL GW +DIF+H Sbjct: 180 ACFDFLPHRAELDLAGWPEIDIFAH 204 >gi|330993409|ref|ZP_08317344.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1] gi|329759439|gb|EGG75948.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1] Length = 215 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/205 (51%), Positives = 143/205 (69%), Gaps = 4/205 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I H GD+PA+ + +AVDTET+GL P RDRLC+VQLS GDG ++++ A Sbjct: 10 IHFHRGDLPADVT--FTGMVAVDTETMGLNPHRDRLCLVQLSAGDGQAHLVQVPPHATAA 67 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 PNLV +L D + KI H+ RFD+A+L +TF V V P CTK+AS+L RTYT++HGL + Sbjct: 68 GFPNLVRVLTDARVPKIMHFARFDVAILQHTFNVTVAPCICTKVASKLVRTYTDRHGLAN 127 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +ELLG+ +SK QQSSDW A DL+ EQL YAASDV++LHAL + L R GR D+A Sbjct: 128 LCRELLGVELSKQQQSSDWGATDLTREQLCYAASDVLYLHALWERLEALLHREGRRDVAQ 187 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +F+ RA LD+LG+++ DIF+H Sbjct: 188 ACFDFMPARARLDILGYQDPDIFAH 212 >gi|326388611|ref|ZP_08210204.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370] gi|326206862|gb|EGD57686.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370] Length = 205 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/205 (51%), Positives = 143/205 (69%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 + +HE D+PA+ A + +AVDTET+GL+ RDRLC+VQ+S G G ++R A G Sbjct: 2 AVYLHEEDLPADVLAPGI--VAVDTETMGLVTTRDRLCVVQISDGKGDEHLVRFAPGSTY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +APNL +L D +R K+FH+ RFD+A + Y GV PVFCTKIAS+L RTYT++HGLK+ Sbjct: 60 DAPNLKAVLADPERLKLFHFARFDLAAIHYYLGVMATPVFCTKIASKLVRTYTDRHGLKE 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++EL G ISK QQSSDW +LSD QL+YAASDV +LH ++L R GR+++A Sbjct: 120 LVRELAGKEISKQQQSSDWGGANLSDAQLEYAASDVRYLHTCHAVLVDRLAREGRAEIAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RA LD+ GW + DIFSH Sbjct: 180 ACFDFLPTRALLDIAGWADRDIFSH 204 >gi|307293724|ref|ZP_07573568.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1] gi|306879875|gb|EFN11092.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1] Length = 205 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 108/205 (52%), Positives = 141/205 (68%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ HE D+P A IAVDTET+GL+ RDRLC+VQ+S G G ++R G Sbjct: 2 TVHFHEEDLPQGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGQGDEHLVRFNPGSDY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D R K++H+GRFDIA + + G+ PV+CTKIASRL RTYT++HGLK+ Sbjct: 60 AAPNLRAVLADPARLKLYHFGRFDIAAIRHYMGIVAAPVYCTKIASRLVRTYTDRHGLKE 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +SK QQSSDW LSD Q +YAASDV +LHAL+ + ++L R GR +LA Sbjct: 120 LVRELLGQELSKVQQSSDWGGPVLSDPQKEYAASDVRYLHALKAELDKRLVREGRMELAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RAELDL GW +DIF+H Sbjct: 180 ACFDFLPHRAELDLAGWPEIDIFAH 204 >gi|149201444|ref|ZP_01878419.1| exonuclease, putative [Roseovarius sp. TM1035] gi|149145777|gb|EDM33803.1| exonuclease, putative [Roseovarius sp. TM1035] Length = 203 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 104/184 (56%), Positives = 133/184 (72%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQLS GDG +++++ GQ APNL +L + K+FH+G Sbjct: 20 VAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQVSKGQTTAPNLARLLENPDVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA + FG PV+CTKIAS+L RTYT++HGLK L+ELL I+ISK QQSSDW A Sbjct: 80 RFDIAAMQNAFGALAAPVYCTKIASKLIRTYTDRHGLKYLLQELLNIDISKQQQSSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 D LS QL YAASDV++LH LR + +L R GR +LA +C +FL RA LDL GW +D Sbjct: 140 DSLSAAQLDYAASDVLYLHRLRDELNARLIREGRMELAQACFDFLPQRALLDLAGWPEID 199 Query: 203 IFSH 206 IF+H Sbjct: 200 IFAH 203 >gi|126724660|ref|ZP_01740503.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150] gi|126705824|gb|EBA04914.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150] Length = 203 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 102/184 (55%), Positives = 132/184 (71%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC++Q+S GDG ++++ GQ APNL ML D K+FH+G Sbjct: 20 VAIDCETMGLNPIRDRLCLIQMSNGDGNAHMVQVEKGQTEAPNLCRMLADPNVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA + FGV PV+CTKIAS++ RTYT++HGL++ L+ELL ++ISK QQ SDW A Sbjct: 80 RFDIAAMHNAFGVLTEPVYCTKIASKMVRTYTDRHGLRNLLQELLKVDISKFQQMSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 + L+ QL YAASDV+HLH LR + E L R GR +LA SC +FL RA LDL GW D Sbjct: 140 ETLTKAQLDYAASDVLHLHRLRDRLNELLVREGRMELAQSCFDFLPSRALLDLKGWPETD 199 Query: 203 IFSH 206 IF+H Sbjct: 200 IFAH 203 >gi|87201263|ref|YP_498520.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444] gi|87136944|gb|ABD27686.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444] Length = 205 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 108/205 (52%), Positives = 141/205 (68%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 + +HE D+P A A+AVDTET+GL+ RDRLC+VQ+S G G ++R + G Sbjct: 2 AVFLHEEDLPEGALA--PGAVAVDTETMGLITPRDRLCVVQISDGRGDEHLVRFSPGSAF 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D +R K++H+ RFD+A + + GV PVFCTKIAS+L RTYT++HGLKD Sbjct: 60 AAPNLKAVLADPERLKLYHFARFDLAAIEHYLGVVAAPVFCTKIASKLVRTYTDRHGLKD 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG ISK QQSSDW A L+D Q +YAASDV HLHA+ E+L+R GR+ +A Sbjct: 120 LVRELLGKEISKQQQSSDWGAPTLTDAQQEYAASDVRHLHAMHTILVERLEREGRTAMAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RA LDL GW DIFSH Sbjct: 180 ACFDFLPMRARLDLAGWAERDIFSH 204 >gi|94495607|ref|ZP_01302187.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58] gi|94424995|gb|EAT10016.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58] Length = 205 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 140/205 (68%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ HE D+P A IAVDTET+GL+ RDRLC+VQ+S G G ++R G Sbjct: 2 TVHFHEEDLPVGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGKGDEHLVRFNPGSDY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D +R K++H+GRFDIA L + G+ PV+CTKIASRL RTYT++HGLK+ Sbjct: 60 AAPNLKAVLADPERLKLYHFGRFDIAALRHYLGIVAAPVYCTKIASRLVRTYTDRHGLKE 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +ISK QQSSDW LSD Q YAASDV LH L+ + ++L+R GR +LA Sbjct: 120 LVRELLGQDISKQQQSSDWGGPVLSDAQKDYAASDVRFLHQLKAELDKRLEREGRMELAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RAELDL GW DIF+H Sbjct: 180 ACFDFLPHRAELDLAGWPETDIFAH 204 >gi|149912958|ref|ZP_01901492.1| exonuclease, putative [Roseobacter sp. AzwK-3b] gi|149813364|gb|EDM73190.1| exonuclease, putative [Roseobacter sp. AzwK-3b] Length = 203 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 100/184 (54%), Positives = 133/184 (72%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQ+S GDG +++I GQ APNL +L + K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCVVQMSGGDGNAYLVQIDKGQTEAPNLAALLENPDILKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA +F FG PV+CTKIAS+L RTYT++HGLK+ ++ELL +ISK QQSSDW A Sbjct: 80 RFDIAAMFNAFGALAAPVYCTKIASKLVRTYTDRHGLKNLMQELLDKDISKQQQSSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 L++ QL YAASDV++LH LR + L R GR ++A +C +FL RA+LDL GW +D Sbjct: 140 PKLTEAQLDYAASDVLYLHQLRDELNRMLAREGRVEMAQACFDFLPIRAKLDLAGWPEID 199 Query: 203 IFSH 206 IF+H Sbjct: 200 IFAH 203 >gi|84514850|ref|ZP_01002213.1| exonuclease, putative [Loktanella vestfoldensis SKA53] gi|84511009|gb|EAQ07463.1| exonuclease, putative [Loktanella vestfoldensis SKA53] Length = 203 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 101/184 (54%), Positives = 131/184 (71%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC++Q+S GDG +++++ GQ APNL ML D K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCLIQMSGGDGDCHLVQVSKGQAGAPNLCAMLTDPAVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA L FGV PV+CTKIAS+L RTYT++HGLK L+++LGI+ISK QQ SDW A Sbjct: 80 RFDIAALLNAFGVVTAPVYCTKIASKLVRTYTDRHGLKVLLQDMLGIDISKHQQQSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 L+ QL YAASDV++LH L+ F LQR R+ +A +C +FL RA LDL GW D Sbjct: 140 PKLTPAQLDYAASDVLYLHQLKAAFDVLLQREDRTAVAKACFDFLPTRAALDLHGWPETD 199 Query: 203 IFSH 206 IF+H Sbjct: 200 IFTH 203 >gi|85705765|ref|ZP_01036862.1| exonuclease, putative [Roseovarius sp. 217] gi|85669755|gb|EAQ24619.1| exonuclease, putative [Roseovarius sp. 217] Length = 203 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 103/184 (55%), Positives = 132/184 (71%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQLS GDG ++++A GQ +APNL +L D K+FH+G Sbjct: 20 VAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQVAKGQTSAPNLERLLTDPNVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA + FG PV+CTKIAS+L RTYT++HGLK L+ELL I+ISK QQSSDW A Sbjct: 80 RFDIAAMHNAFGALAAPVYCTKIASKLIRTYTDRHGLKYLLQELLNIDISKQQQSSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 + L+ QL YAASDV++LH LR + +L R R LA +C +FL RA LDL GW +D Sbjct: 140 ESLTSAQLDYAASDVLYLHRLRDELNTRLVREDRMGLAQACFDFLPQRAVLDLAGWPEID 199 Query: 203 IFSH 206 IF+H Sbjct: 200 IFAH 203 >gi|83950822|ref|ZP_00959555.1| exonuclease, putative [Roseovarius nubinhibens ISM] gi|83838721|gb|EAP78017.1| exonuclease, putative [Roseovarius nubinhibens ISM] Length = 203 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 103/204 (50%), Positives = 146/204 (71%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T V++GD+P + + +A+D ET+GL+P RDRLC+VQLS GDG ++++A GQ+ Sbjct: 2 TNTVYKGDLPDDLDLGPI--VAIDCETMGLLPHRDRLCVVQLSGGDGHAHLVQVAKGQRT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L + K+FH+GRFDIA + FG PV+CTKIAS+L RTYT++HGL++ Sbjct: 60 APNLVRLLENPDVLKLFHFGRFDIAAMLNAFGAVAAPVYCTKIASKLVRTYTDRHGLRNL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L++LLG++ISK QQSSDW +LS Q+ YAASDV++LH LR +L R R ++A + Sbjct: 120 LQDLLGVDISKHQQSSDWGRAELSTAQIDYAASDVLYLHRLREALNVRLLREERMEMAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA+LDL GW + D+F+H Sbjct: 180 CFDFLPMRAQLDLAGWPDDDLFAH 203 >gi|260577298|ref|ZP_05845271.1| 3'-5' exonuclease [Rhodobacter sp. SW2] gi|259020479|gb|EEW23802.1| 3'-5' exonuclease [Rhodobacter sp. SW2] Length = 204 Score = 214 bits (544), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 108/204 (52%), Positives = 144/204 (70%), Gaps = 3/204 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +++GD+PA V +A+DTET+GL PRRDRLC+VQLS GDG +++IA GQ +A Sbjct: 3 VHLYKGDLPAGLNLGPV--VAIDTETMGLDPRRDRLCLVQLSSGDGNAHLVQIARGQTSA 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D K+FH+GRFDIA + FGV PV+CTKIA++L RT+T++HGLK L Sbjct: 61 PNLEKLLTDPSVLKLFHFGRFDIAAMKAAFGVVTAPVWCTKIAAKLVRTFTDRHGLKYLL 120 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +EL+G+++SK QQ+SDW ++ LSD Q YAASDV++LH L + L R R LA C Sbjct: 121 QELVGVDVSKQQQTSDWGSETLSDAQKDYAASDVLYLHRLMAELERCLIRENRLALAQRC 180 Query: 184 CNFLMDRAELDLLGW-ENVDIFSH 206 +FL RAELDL+GW E DIF H Sbjct: 181 FDFLPTRAELDLMGWDEPNDIFHH 204 >gi|241760851|ref|ZP_04758940.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753179|ref|YP_003226072.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856222|ref|YP_162013.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4] gi|241374470|gb|EER63931.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552542|gb|ACV75488.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775217|gb|AAV88902.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4] Length = 209 Score = 214 bits (544), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 105/205 (51%), Positives = 141/205 (68%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-GQK 61 T+ HE D+P + + A+AVDTET+GL+ RDRLC+VQ+S G G ++R A Sbjct: 6 TVYFHEEDLPKDALSE--GAVAVDTETMGLITHRDRLCVVQISDGKGDQHLVRFAPDSDY 63 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +APNL +L D R KI+H+GRFDIA + Y GV PV+CTKIAS+L RTYT++HGLK+ Sbjct: 64 SAPNLKAVLSDPNRLKIYHFGRFDIAAILYYLGVMAAPVYCTKIASKLVRTYTDRHGLKE 123 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +ISK QQ SDW + LSD Q +YAASDV LH L+ + +L+R R +LA Sbjct: 124 LVRELLGQDISKQQQCSDWGGEKLSDAQREYAASDVRFLHGLKEKLDIRLKREKREELAQ 183 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RA+LD+ GW DIF+H Sbjct: 184 ACFDFLPTRAKLDIAGWSETDIFAH 208 >gi|85709987|ref|ZP_01041052.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1] gi|85688697|gb|EAQ28701.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1] Length = 215 Score = 214 bits (544), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 106/206 (51%), Positives = 141/206 (68%), Gaps = 2/206 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ HE D+PA +AVDTET+GL+ RDRLC+VQ+S G G ++R + G Sbjct: 6 TVHFHEEDLPA-GVLEGTGPLAVDTETMGLITHRDRLCVVQISDGSGDEHLVRFSPGSDY 64 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L DE R K++H+ RFD+A + Y GV PVFCTKIAS+L RTYT++HGLK+ Sbjct: 65 EAPNLSAILADESRVKLYHFARFDLAAIQYYLGVVAAPVFCTKIASKLVRTYTDRHGLKN 124 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ELLG +ISK QQSSDW +L+D Q +YAASDV +LH LR + +L+R GR ++A Sbjct: 125 LTDELLGESISKQQQSSDWGGPELNDAQREYAASDVRYLHRLRDELIVRLEREGRMEIAQ 184 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LD+ GW+ DIFSH+ Sbjct: 185 ACFDFLPTRAALDIAGWDGRDIFSHN 210 >gi|254292595|ref|YP_003058618.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814] gi|254041126|gb|ACT57921.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814] Length = 204 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 104/205 (50%), Positives = 141/205 (68%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I+ HEGD+P + +AVDTE +GL RD+LC+VQLS G G ++R+ + Sbjct: 2 AIKYHEGDLPN--GLKLGAILAVDTEAMGLEFHRDQLCVVQLSDGTGDEHVVRLDRKTFD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL ++ D K KIFH+ RFD+A++ G+ P+FCTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKALMSDTKVLKIFHFARFDVAMMKKWLGIECAPIFCTKIASKLARTYTDRHGLKDV 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G ++SKAQQSSDW AD LS+ QL YAASDV++LH +R + L+R GR +LA + Sbjct: 120 SRELVGADMSKAQQSSDWGADSLSEAQLAYAASDVLYLHEIREKLILMLEREGRMELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDL GW DIF+HS Sbjct: 180 CFDFLPKRADLDLAGWPETDIFAHS 204 >gi|254438617|ref|ZP_05052111.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307] gi|198254063|gb|EDY78377.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307] Length = 203 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/184 (54%), Positives = 133/184 (72%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC++QLS GDG +I+I+ GQ APNL +L D + K+FH+G Sbjct: 20 VAIDCETMGLNPHRDRLCLIQLSSGDGNCHLIQISVGQTTAPNLCKVLADPQVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA + FG PV+CTKIAS+L RTYT++HGLK+ L+E L ++ISK QQ SDW A Sbjct: 80 RFDIAAMLNAFGTVTAPVYCTKIASKLIRTYTDRHGLKNLLQEFLRVDISKFQQQSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 + LS Q+ YAASDV++LH LR + +L R R+D+A +C +FL RA+LDL GW D Sbjct: 140 ETLSKAQIDYAASDVLYLHQLRDELNIRLVRERRTDMAQACFDFLPMRAKLDLAGWPEQD 199 Query: 203 IFSH 206 IFSH Sbjct: 200 IFSH 203 >gi|209542515|ref|YP_002274744.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|209530192|gb|ACI50129.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5] Length = 210 Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 103/204 (50%), Positives = 142/204 (69%), Gaps = 3/204 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 +I +H GD+ + + +IAVDTE +GL P RDRLC+VQ+S GDG+ +++I G + Sbjct: 8 SILLHRGDLADDVV--FHGSIAVDTEAMGLNPHRDRLCLVQISAGDGSAHLVQILPGTPS 65 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL ++ D K+ H+ RFD+A+L ++ GV V PV CTKIAS+L RT+T +HGL Sbjct: 66 -PNLARLMADPSITKLMHFARFDVAILQHSLGVTVAPVICTKIASKLVRTFTERHGLAQL 124 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG+++SK QQ+SDW A +L+ EQ YAASDV+HLHAL + L R GR DLA + Sbjct: 125 CRELLGVDLSKQQQTSDWGAPELTPEQKAYAASDVLHLHALWTKLEALLHREGRRDLAQA 184 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA LDLLG+E+ DIF+H Sbjct: 185 CYDFLPTRARLDLLGYEDPDIFAH 208 >gi|56417079|ref|YP_154153.1| ribonuclease D [Anaplasma marginale str. St. Maries] gi|222475445|ref|YP_002563862.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida] gi|254995250|ref|ZP_05277440.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi] gi|255003431|ref|ZP_05278395.1| ribonuclease D (rnd) [Anaplasma marginale str. Puerto Rico] gi|255004550|ref|ZP_05279351.1| ribonuclease D (rnd) [Anaplasma marginale str. Virginia] gi|56388311|gb|AAV86898.1| ribonuclease D [Anaplasma marginale str. St. Maries] gi|222419583|gb|ACM49606.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida] Length = 204 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 105/204 (51%), Positives = 142/204 (69%), Gaps = 3/204 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + VH D+P + +AVDTET+GL+ RRDR+C+VQLS GDG +++ + G + Sbjct: 2 AVFVHNNDLPD--GLDLGNVVAVDTETMGLVCRRDRVCLVQLSSGDGDAHLVKFS-GDYS 58 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ++ + + KIFH+ RFD+A + + FG+ P +CTKIASRL RTYTN HGLKD Sbjct: 59 APNLRRIVSNPEIMKIFHFARFDVAAIRHCFGMWAVPCYCTKIASRLVRTYTNHHGLKDL 118 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELLG+ I+KAQQSSDW + L+ EQL YAA+DV++LH ++ + L+R + DLA S Sbjct: 119 CYELLGVKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLDMMLEREDKQDLAES 178 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C F+ RAELDLLGW+ VDIFSH Sbjct: 179 CFKFIPARAELDLLGWDGVDIFSH 202 >gi|209966458|ref|YP_002299373.1| ribonuclease D, putative [Rhodospirillum centenum SW] gi|209959924|gb|ACJ00561.1| ribonuclease D, putative [Rhodospirillum centenum SW] Length = 204 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 107/204 (52%), Positives = 142/204 (69%), Gaps = 3/204 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-N 62 I +H+GD+P V +A+DTET+GL P RDRLC+VQLS GDG +++ G + Sbjct: 3 IDLHDGDLPDGLDLGPV--VAIDTETMGLNPARDRLCLVQLSAGDGRCHLVQFRQGAGYD 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K+FH+ RFDIAV+ GV PV+CTK+AS+LTRT+T++HGLKD Sbjct: 61 APNLKRMLTDPGTLKLFHFARFDIAVMQAYLGVLTGPVYCTKVASKLTRTFTDRHGLKDL 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++LLG+ +SK QQSSDW AD+L+ EQL+YAASDV+HLH ++ + L R GR+ LA Sbjct: 121 CRDLLGVELSKQQQSSDWGADELTAEQLKYAASDVLHLHEIKARLDGMLAREGRTALAED 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL RA LDL GW + D+F+H Sbjct: 181 CFRFLPTRALLDLGGWADPDLFAH 204 >gi|269958513|ref|YP_003328300.1| 3'-5' exonuclease [Anaplasma centrale str. Israel] gi|269848342|gb|ACZ48986.1| 3'-5' exonuclease [Anaplasma centrale str. Israel] Length = 204 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 3/204 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + VH D+P + +AVDTET+GL+ RRDR+C+VQLS GDG +++ + G + Sbjct: 2 AVFVHNNDLPD--GLDLGNVVAVDTETMGLVCRRDRVCLVQLSSGDGDAHLVKFS-GDYS 58 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ++ + KIFH+ RFD+A + + FG+ P +CTKIASRL RTYTN HGLKD Sbjct: 59 APNLRRIVSNPDIMKIFHFARFDVAAIRHCFGMWATPCYCTKIASRLVRTYTNHHGLKDL 118 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELLG+ I+KAQQSSDW + L+ EQL YAA+DV++LH ++ + L+R + DLA S Sbjct: 119 CYELLGVKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLDMMLEREDKQDLAES 178 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C F+ RAELDLLGW+ VDIFSH Sbjct: 179 CFKFIPARAELDLLGWDGVDIFSH 202 >gi|162147898|ref|YP_001602359.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] gi|161786475|emb|CAP56057.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] Length = 210 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 103/204 (50%), Positives = 142/204 (69%), Gaps = 3/204 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 +I +H GD+ + + +IAVDTE +GL P RDRLC+VQ+S GDG+ +++I G + Sbjct: 8 SILLHRGDLADDVV--FHGSIAVDTEAMGLNPHRDRLCLVQISAGDGSAHLVQILPGTPS 65 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL ++ D K+ H+ RFD+A+L ++ GV V PV CTKIAS+L RT+T +HGL Sbjct: 66 -PNLARLMADPSITKLMHFARFDVAILQHSLGVTVAPVICTKIASKLVRTFTERHGLAQL 124 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG+++SK QQ+SDW A +L+ EQ YAASDV+HLHAL + L R GR DLA + Sbjct: 125 CRELLGVDLSKQQQTSDWGAPELTPEQKAYAASDVLHLHALWTKLEVLLHREGRRDLAQA 184 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA LDLLG+E+ DIF+H Sbjct: 185 CYDFLPTRARLDLLGYEDPDIFAH 208 >gi|103487824|ref|YP_617385.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256] gi|98977901|gb|ABF54052.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256] Length = 205 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 3/206 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 ++ HE D+P + A+AVDTET+GL P RDRLC+VQ+S G G ++R G Sbjct: 2 SVYFHEEDLPEDVLG--PGAVAVDTETMGLNPLRDRLCLVQISDGSGDEHLVRFRPGSSY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +AP L +L D +R K+FH+ RFDIA L GV PV+CTKIAS+L RTYT++HGLK+ Sbjct: 60 DAPVLKAILADPERLKLFHFARFDIAALQQALGVVTTPVYCTKIASKLVRTYTDRHGLKE 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +SK QQSSDW A +LS+ Q YAASDV LHA++ +L R GR++LA Sbjct: 120 LVRELLGQEVSKQQQSSDWGAAELSEAQRDYAASDVRFLHAMKEILDARLAREGRTELAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LDL GW VDIF+HS Sbjct: 180 ACFDFLPTRAALDLAGWPEVDIFAHS 205 >gi|88607131|ref|YP_505646.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ] gi|88598194|gb|ABD43664.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ] Length = 204 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 105/204 (51%), Positives = 142/204 (69%), Gaps = 3/204 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + VH D+P + D +AVDTET+GL+ RRDR+C+VQLS G+G +++ G + Sbjct: 2 AVFVHRNDLPHD--VDLGDMVAVDTETMGLVCRRDRVCLVQLSAGNGDAHLVKFD-GDYS 58 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ++ D KIFH+ RFD+A + + FG+ P +CTKIASRL RTYTN HGLKD Sbjct: 59 APNLRKVISDPGVLKIFHFARFDVAAIRHGFGMWATPCYCTKIASRLVRTYTNHHGLKDL 118 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELLG+ I+KAQQSSDW + L+ EQL YAA+DV++LHA++ + L+R + +LA + Sbjct: 119 CYELLGVKINKAQQSSDWGREVLTAEQLSYAAADVIYLHAIKKKLDMMLEREEKQELAEA 178 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C F+ RAELDLLGW+ VDIFSH Sbjct: 179 CFKFVPVRAELDLLGWDGVDIFSH 202 >gi|254487503|ref|ZP_05100708.1| ribonuclease D [Roseobacter sp. GAI101] gi|214044372|gb|EEB85010.1| ribonuclease D [Roseobacter sp. GAI101] Length = 204 Score = 211 bits (537), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 100/184 (54%), Positives = 130/184 (70%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D ET+GL P RDRLC+VQLS GDG +++I GQ APNL +L D + K+FH+G Sbjct: 20 VAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQIGKGQTEAPNLCALLEDPEVLKLFHFG 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFDIA + FG + PV+CTKIASRL RT+T++HGL +ELLG +ISK QQSSDW A Sbjct: 80 RFDIAAMQNAFGAKTAPVYCTKIASRLVRTFTDRHGLAKLCQELLGTDISKQQQSSDWGA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 L+ Q+ YAASDV++LH LR + L R R D+A +C +FL RA+LDL GW + D Sbjct: 140 AQLTQAQIDYAASDVLYLHQLRDKLNAMLIREDRMDIAQACFDFLPMRAQLDLAGWPDTD 199 Query: 203 IFSH 206 IF+H Sbjct: 200 IFAH 203 >gi|83944937|ref|ZP_00957303.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633] gi|83851719|gb|EAP89574.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633] Length = 204 Score = 211 bits (536), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 105/207 (50%), Positives = 140/207 (67%), Gaps = 6/207 (2%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 TI H GD+P + R +A+DTET GL RD LC+VQLS GDG I++ Sbjct: 2 TIHFHRGDLPDGLDLGKR----VAIDTETQGLSLVRDGLCLVQLSAGDGEAHIVQPDRAT 57 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + PNL +L D EK+ H+ RFD+A++ GV + PVFCTKIAS+L RTYT++HGLK Sbjct: 58 YDCPNLKALLADTGVEKLLHFARFDLAIIERDLGVTMTPVFCTKIASKLVRTYTDRHGLK 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D +E+ G+ +SK QQSSDW+A DLS+ QL YAASDV++LHA+ T L+R GR ++A Sbjct: 118 DVCREIAGVELSKQQQSSDWAAQDLSEAQLNYAASDVLYLHAIADGLTAMLEREGRMEMA 177 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LDL+GW+ DIF+HS Sbjct: 178 RACFDFLPSRARLDLMGWDETDIFAHS 204 >gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957] gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957] Length = 217 Score = 210 bits (535), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 110/208 (52%), Positives = 143/208 (68%), Gaps = 7/208 (3%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT---VDIIRIAAGQ 60 I++H+ D+P + +A+DTET+GL PRRDRLC+VQLS GDG V II + G Sbjct: 12 IKLHKHDLPD--GIDFGPVVAIDTETMGLDPRRDRLCLVQLSAGDGNAHCVQIIPESLGG 69 Query: 61 KNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + A PNL +L K+FH+ RFD+A+L G+ PV CTKIA++L RT+T++HG Sbjct: 70 RGADCPNLKALLTRPDVVKLFHFARFDVAILRAALGIECAPVRCTKIAAKLVRTFTDRHG 129 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 LKD +ELLG+ ISK QQSSDW A +L+ EQL YAASDV+HLHAL + L+R GR + Sbjct: 130 LKDLCRELLGVEISKQQQSSDWGAPELTPEQLAYAASDVLHLHALWAKLEGLLRREGRLE 189 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA SC FL R +LDLLG+E+ DIFSH Sbjct: 190 LAESCFRFLPARGQLDLLGYEDPDIFSH 217 >gi|85375259|ref|YP_459321.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594] gi|84788342|gb|ABC64524.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594] Length = 206 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 108/206 (52%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 4 IRVHEGDIPAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-GQK 61 + HE D+PA A DA +AVDTET+GL+ RRDRLCIVQ+S G ++R A Sbjct: 3 VHFHEEDLPAGVLAG--DAPLAVDTETMGLVTRRDRLCIVQISDGGEDEHLVRFAPDSDY 60 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D R K++H+ RFD+A + + GV PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 AAPNLKALLADTNRVKLYHFARFDLAAIEHYLGVTAAPVFCTKIASKLTRTYTDRHGLKN 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG N+SK QQSSDW D+++ Q YAASDV +LH +R +L+R GR+++A Sbjct: 121 LVEELLGENLSKQQQSSDWGGADINEAQRDYAASDVRYLHRMREILITRLEREGRTEMAQ 180 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LDL GWE DIF HS Sbjct: 181 ACFDFLPTRARLDLAGWEEHDIFHHS 206 >gi|83591355|ref|YP_425107.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170] gi|83574269|gb|ABC20820.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170] Length = 206 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 108/204 (52%), Positives = 134/204 (65%), Gaps = 3/204 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI H GD+P+ + IAVDTET+GL P RDRLC+VQLS GD ++ + Sbjct: 6 TIHYHRGDLPS--GLTFPQGIAVDTETMGLNPHRDRLCVVQLSGGDNIAHVVHLNR-DLQ 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 AP L +L D KI H+GRFDIA + + GV PV+CTKIAS+L RT T+ HGLK Sbjct: 63 APVLASLLGDPSVLKIMHFGRFDIASIHHGLGVLCEPVYCTKIASKLCRTNTDSHGLKAL 122 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 K+LLG+++SK QQ+SDW A+ LS EQL YAASDV++LHAL+ + L R GR+ LA Sbjct: 123 CKDLLGVDLSKHQQTSDWGAESLSPEQLTYAASDVLYLHALKARLDGLLAREGRTTLAEG 182 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL RA LDL GWE DIFSH Sbjct: 183 CFRFLPTRALLDLAGWEEPDIFSH 206 >gi|326403860|ref|YP_004283942.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301] gi|325050722|dbj|BAJ81060.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301] Length = 218 Score = 208 bits (529), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 110/210 (52%), Positives = 144/210 (68%), Gaps = 7/210 (3%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AA 58 TI +H D+P V +AVDTET+GL PRRDRLC+VQLS GD + +++I A Sbjct: 10 ATIHIHRHDLPDGLDLGPV--VAVDTETMGLDPRRDRLCLVQLSAGDNSAHLVQIVPPAL 67 Query: 59 GQKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 G + A PNL +L K+FH+ RFD+A+L++ GV PV CTKIAS+L RTYT++ Sbjct: 68 GGRGADCPNLKRLLEHPGVTKLFHFARFDLAMLYHALGVTTAPVICTKIASKLVRTYTDR 127 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 HGLKD ++L+GI ISK QQ+SDW + +LS EQ YAASDV+HLHA+ + L R GR Sbjct: 128 HGLKDLCRDLVGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWARLEALLVREGR 187 Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA +C FL RA+LDLLG+E+ DIFSH Sbjct: 188 RELADACYRFLPARAKLDLLGFEDPDIFSH 217 >gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03] gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07] gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22] gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26] gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32] gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12] Length = 217 Score = 208 bits (529), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 107/208 (51%), Positives = 142/208 (68%), Gaps = 7/208 (3%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT---VDIIRIAAGQ 60 I +H D+P + ++AVDTET+GL P RDRLC+VQLS GDGT V II + G Sbjct: 10 ITLHRNDLPDNVT--FTGSVAVDTETMGLNPHRDRLCLVQLSAGDGTAHLVQIIPTSLGG 67 Query: 61 K--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 K + PNL +L D KI H+ RFD+A+L + G+ V PV CTKIA+RL RT+T++HG Sbjct: 68 KGYDCPNLKRVLADPSITKIMHFARFDVAILQHALGITVSPVVCTKIAARLVRTFTDRHG 127 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L +++LG+ +SK QQ+SDW A +L EQL YAASDV++LHAL + + L R GR + Sbjct: 128 LAALCRDMLGVELSKQQQTSDWGAKELKPEQLAYAASDVLYLHALWDKMSALLDREGRRE 187 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA +C +FL RA LDLLG+E+ DIFSH Sbjct: 188 LAQACYDFLPARARLDLLGYEDPDIFSH 215 >gi|83313031|ref|YP_423295.1| ribonuclease D [Magnetospirillum magneticum AMB-1] gi|82947872|dbj|BAE52736.1| Ribonuclease D [Magnetospirillum magneticum AMB-1] Length = 203 Score = 207 bits (526), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 106/204 (51%), Positives = 137/204 (67%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ H+ D+P + +A+D+ET+GL +RDRLC+VQLS GDG ++ + N Sbjct: 2 TVFYHKNDLPD--GLDLGNLVAIDSETMGLNLQRDRLCVVQLSAGDGHAHVVHYPKPEWN 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +PNLV ML D K K+FH+ RFD+A++ GVR PVFCTKIAS+LTRT T H LK Sbjct: 60 SPNLVRMLADSKVTKLFHFARFDVAMIRRYLGVRCTPVFCTKIASKLTRTNTEGHSLKVL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 KE L I++SK QQSSDW A +L+ +QL YAASDV++LH L+ + L R GR LA + Sbjct: 120 CKEFLNIDLSKLQQSSDWGAPELTADQLAYAASDVLYLHQLKDRLDALLDREGRRALAEA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL DRAELDL GW+ DIFSH Sbjct: 180 CFAFLPDRAELDLAGWDAEDIFSH 203 >gi|148260666|ref|YP_001234793.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5] gi|146402347|gb|ABQ30874.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5] Length = 218 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/210 (52%), Positives = 143/210 (68%), Gaps = 7/210 (3%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AA 58 TI +H D+P V +AVDTET+GL PRRDRLC+VQLS GD + +++I A Sbjct: 10 ATIHIHRHDLPDGLDLGPV--VAVDTETMGLDPRRDRLCLVQLSAGDNSAHLVQIVPPAL 67 Query: 59 GQKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 G + A PNL +L K+FH+ RFD+A+L + GV PV CTKIAS+L RTYT++ Sbjct: 68 GGRGADCPNLKRLLEHPGVTKLFHFARFDLAMLHHALGVTTAPVICTKIASKLVRTYTDR 127 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 HGLKD ++L+GI ISK QQ+SDW + +LS EQ YAASDV+HLHA+ + L R GR Sbjct: 128 HGLKDLCRDLVGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWARLEALLVREGR 187 Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA +C FL RA+LDLLG+E+ DIFSH Sbjct: 188 RELADACYRFLPARAKLDLLGFEDPDIFSH 217 >gi|114797270|ref|YP_758935.1| putative exonuclease [Hyphomonas neptunium ATCC 15444] gi|114737444|gb|ABI75569.1| putative exonuclease [Hyphomonas neptunium ATCC 15444] Length = 204 Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/207 (49%), Positives = 142/207 (68%), Gaps = 3/207 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I +H+GD+P + V IAVDTE +GL RD L +VQ+S GDGT ++++ Sbjct: 1 MNQITLHKGDLPEGLSLGPV--IAVDTEAMGLNAMRDNLTLVQVSSGDGTAHLVQLTR-D 57 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + PNL +L D K KIFH+ RFD+ ++ G+ P++CTKIASRL RTYT++HGLK Sbjct: 58 YDCPNLKALLTDPKVLKIFHFARFDVVMMKRWMGITCAPIWCTKIASRLARTYTDRHGLK 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D +E+ G+++SKAQQSSDW D L+D Q+QYAASDV++LH ++ L+R GR +LA Sbjct: 118 DVAREVAGVDMSKAQQSSDWGQDKLTDAQIQYAASDVLYLHQIKAGLEAMLEREGRLELA 177 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA+LDL GW + DIF+HS Sbjct: 178 QACFDFLPIRADLDLAGWPDEDIFAHS 204 >gi|329114438|ref|ZP_08243200.1| Ribonuclease D [Acetobacter pomorum DM001] gi|326696514|gb|EGE48193.1| Ribonuclease D [Acetobacter pomorum DM001] Length = 256 Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/208 (50%), Positives = 142/208 (68%), Gaps = 7/208 (3%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT---VDIIRIAAGQ 60 I +H D+P + ++AVDTET+GL P RDRLC+VQLS GDGT V II + G Sbjct: 49 ITLHRNDLPDNVT--FTGSVAVDTETMGLNPHRDRLCLVQLSAGDGTAHLVQIIPTSLGG 106 Query: 61 K--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 K + PNL ++ D KI H+ RFD+A+L + G+ V PV CTKIA+RL RT+T++HG Sbjct: 107 KGYDCPNLKRVMADPSITKIMHFARFDVAILQHALGITVSPVVCTKIAARLVRTFTDRHG 166 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L +++LG+ +SK QQ+SDW A +L EQL YAASDV++LHAL + + L R GR + Sbjct: 167 LAALCRDMLGVELSKQQQTSDWGALELKPEQLAYAASDVLYLHALWDKMSALLDREGRRE 226 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA +C +FL RA LDLLG+E+ DIFSH Sbjct: 227 LAQACYDFLPARARLDLLGYEDPDIFSH 254 >gi|46201483|ref|ZP_00054962.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1] Length = 203 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 105/204 (51%), Positives = 137/204 (67%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ H+ D+P + +A+D+ET+GL +RDRLC+VQLS GDG ++ + N Sbjct: 2 TVFYHKNDLPD--GLDLGNLVAIDSETMGLNLQRDRLCVVQLSAGDGHAHVVHYPKPEWN 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +PNLV ML D K K+FH+ RFD+A++ GVR P+FCTKIAS+LTRT T H LK Sbjct: 60 SPNLVRMLADPKVTKLFHFARFDVAMIRKYLGVRCNPLFCTKIASKLTRTNTEGHSLKVL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 KE L I++SK QQSSDW A +L+ +QL YAASDV++LH L+ + L R GR LA + Sbjct: 120 CKEFLNIDLSKLQQSSDWGAPELNADQLAYAASDVLYLHQLKDRLDMLLDREGRRALAEA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL DRAELDL GW+ DIFSH Sbjct: 180 CFAFLPDRAELDLAGWDAEDIFSH 203 >gi|149185091|ref|ZP_01863408.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21] gi|148831202|gb|EDL49636.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21] Length = 207 Score = 204 bits (518), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 143/206 (69%), Gaps = 3/206 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-GQK 61 + HE D+P + A +AVDTET+GL+ RDRLC+VQ+S G+G ++R Sbjct: 2 AVHFHEEDLPEDVLAD--GPVAVDTETMGLVTIRDRLCVVQISDGNGDEHLVRFGPDSDY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +APNL +L D +R K+FH+ RFD+A + Y GV P +CTKIAS++ RT+T++HGLK+ Sbjct: 60 DAPNLKAVLGDPERLKLFHFARFDLAAIEYYLGVTAAPCYCTKIASKMVRTFTDRHGLKN 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG ++SKAQQSSDW L+D Q YAASDV LH ++ + +L+R GR++LA Sbjct: 120 LVEELLGESMSKAQQSSDWGGPVLNDAQRDYAASDVRFLHRMKEELDRRLEREGRTELAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LD+LGW++ DIFSH+ Sbjct: 180 ACFDFLPARAHLDILGWDDHDIFSHA 205 >gi|91205563|ref|YP_537918.1| ribonuclease D [Rickettsia bellii RML369-C] gi|157827279|ref|YP_001496343.1| ribonuclease D [Rickettsia bellii OSU 85-389] gi|91069107|gb|ABE04829.1| Ribonuclease D [Rickettsia bellii RML369-C] gi|157802583|gb|ABV79306.1| Ribonuclease D [Rickettsia bellii OSU 85-389] Length = 203 Score = 200 bits (509), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 98/204 (48%), Positives = 135/204 (66%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +++ D+P + +A+DTET+GL RD+LC++Q S G+G ++ N Sbjct: 2 TITLYQNDLPDDFELE--GDLAIDTETMGLNLYRDKLCLLQFSNGNGDAHLVHFLNQNYN 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D++R KIFH+ RFD+A + G+ + +FCTKI+S+L RTYT HGLKD Sbjct: 60 APNLKNLLSDKERCKIFHFARFDLAAIKKYLGIDLENIFCTKISSKLVRTYTESHGLKDI 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG+NISK QQSS W AD+LS +Q +YAA DV++LH LR E L + R +LA Sbjct: 120 CRELLGVNISKQQQSSYWGADNLSSDQQEYAAKDVLYLHKLREHLIEMLVKENRFELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDL+GW+ VDIF+H Sbjct: 180 IFKFLPTRANLDLVGWDEVDIFTH 203 >gi|294084811|ref|YP_003551571.1| 3'- 5' exonuclease family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664386|gb|ADE39487.1| 3'- 5' exonuclease family protein, putative [Candidatus Puniceispirillum marinum IMCC1322] Length = 203 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 97/204 (47%), Positives = 141/204 (69%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + +++ D+PA+ + +A+DTET+GL +RDRLC+VQLS GDG +++IA K Sbjct: 2 AVNIYKDDLPADIDLGSI--VAIDTETMGLKTQRDRLCLVQLSSGDGNAHLVQIAQPAKP 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +P L +L D K+FH+ RFD+A L + G ++CTKIAS+L RTYT++HGLK+ Sbjct: 60 SPVLAALLADPAVTKLFHFARFDLAALIHYIGAVEGDIYCTKIASKLARTYTDRHGLKEL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL I+ISK QQSSDW A+ L+ +Q YAA DV++LHA+R + + L+R R LA + Sbjct: 120 CRELLQIDISKQQQSSDWGAETLTIDQQNYAAGDVLYLHAIREKLSYMLERENRMALANA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL +RA+LDL+G+ +VDIF H Sbjct: 180 CFGFLPERAQLDLIGFGDVDIFHH 203 >gi|42520711|ref|NP_966626.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410451|gb|AAS14560.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila melanogaster] Length = 206 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 96/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +++ D+PA + +IAVDTE +GL+ RDRLC+VQLS DG ++++ A Sbjct: 3 IFLYKDDLPASSIPDDIRSIAVDTEAMGLLHSRDRLCLVQLSFNDGNAHLVQLK-NDYTA 61 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D+ KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ Sbjct: 62 PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELL ++K QQSSDW ++L+D+Q YAASDV++LH ++ + L+R R +LA C Sbjct: 122 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 181 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R ELDL+GWENVDIF+H Sbjct: 182 FEFLPTRIELDLMGWENVDIFNH 204 >gi|225630598|ref|YP_002727389.1| 3'-5' exonuclease [Wolbachia sp. wRi] gi|225592579|gb|ACN95598.1| 3'-5' exonuclease [Wolbachia sp. wRi] Length = 206 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +++ D+PA V +IAVDTE +GL+ RDRLC+VQLS DG ++++ A Sbjct: 3 IFLYKDDLPASSIPDDVRSIAVDTEAMGLLHGRDRLCLVQLSFNDGNAHLVQLK-NDYTA 61 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D+ KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ Sbjct: 62 PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELL ++K QQSSDW ++L+D+Q YAASDV++LH ++ + L+R R +LA C Sbjct: 122 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 181 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R ELDL+GWENVDIF+H Sbjct: 182 FEFLPTRIELDLMGWENVDIFNH 204 >gi|58698542|ref|ZP_00373443.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae] gi|58534924|gb|EAL59022.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae] Length = 234 Score = 195 bits (496), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +++ D+PA V +IAVDTE +GL+ RDRLC+VQLS DG ++++ A Sbjct: 31 IFLYKDDLPASSIPDDVRSIAVDTEAMGLLHGRDRLCLVQLSFNDGNAHLVQLK-NDYTA 89 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D+ KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ Sbjct: 90 PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 149 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELL ++K QQSSDW ++L+D+Q YAASDV++LH ++ + L+R R +LA C Sbjct: 150 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 209 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R ELDL+GWENVDIF+H Sbjct: 210 FEFLPTRIELDLMGWENVDIFNH 232 >gi|117923642|ref|YP_864259.1| 3'-5' exonuclease [Magnetococcus sp. MC-1] gi|117607398|gb|ABK42853.1| 3'-5' exonuclease [Magnetococcus sp. MC-1] Length = 213 Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 103/207 (49%), Positives = 132/207 (63%), Gaps = 4/207 (1%) Query: 3 TIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 TI D+ RY+ + +AVDTET+GL RDRLC+VQ+ G V +++I Q Sbjct: 7 TIHTFIDDLDEAQFQRYMKSPFLAVDTETMGLDINRDRLCVVQMCDVTGEVSVVQIRNYQ 66 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP L ++ + EKIFH+ RFD+A + + ++PVFCTKIAS+L RTYT HGLK Sbjct: 67 --APRLKALMEAPEVEKIFHFARFDLATMKRWLDIEIKPVFCTKIASKLVRTYTGSHGLK 124 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D +ELLG+ + K QQSSDW A+ L+ EQLQYAASDV+HL +R + E L R GR LA Sbjct: 125 DVSQELLGVVMDKQQQSSDWGAEQLTPEQLQYAASDVIHLVEIRARLVEMLAREGRLQLA 184 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 FL R LDLLGW N DIFSH+ Sbjct: 185 DEIMRFLPTRVALDLLGWNNHDIFSHA 211 >gi|58584866|ref|YP_198439.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419182|gb|AAW71197.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 206 Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 96/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I V++ D+PA V +IAVDTE +GL+ RDRLC++QLS DG +I+ A Sbjct: 3 IFVYKDDLPASSIPDNVRSIAVDTEAMGLLHVRDRLCLIQLSFNDGNAHLIQFK-NDYAA 61 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D+ KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ Sbjct: 62 PNLRKILGDKNITKIFHFARFDVSIICYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELL ++K QQSSDW +++L+D+Q YAASDV++LH ++ + L+R R +LA C Sbjct: 122 LELLDTKLNKQQQSSDWGSENLTDKQKSYAASDVLYLHKIKEKLDLMLERENRKELAQKC 181 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R ELDL+GWE++DIF+H Sbjct: 182 FEFLPIRVELDLMGWEDMDIFNH 204 >gi|126660170|ref|ZP_01731288.1| 3'-5' exonuclease [Cyanothece sp. CCY0110] gi|126618535|gb|EAZ89286.1| 3'-5' exonuclease [Cyanothece sp. CCY0110] Length = 214 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 100/208 (48%), Positives = 136/208 (65%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 +V + D+ +E RY+ DAIA+DTET+GL+P+RDRLC+VQL G V IRI Sbjct: 9 NNFQVCDRDLTSETLDRYLQTDAIAIDTETMGLIPQRDRLCLVQLCDSSGYVTAIRIEKE 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 QK APNL +L ++ KIFHY RFD+A Y FG+ P+FCTK+AS+L RTYT HGL Sbjct: 69 QKEAPNLKKLLENQSIVKIFHYARFDVAQFKYNFGIDTAPIFCTKVASKLARTYTGSHGL 128 Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K ++E+ G+ + K+ QSSDW ++ +LS+ QL YAA+DV +L LR Q LQR R + Sbjct: 129 KALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLREQLITMLQREERWE 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 +A C N + ELDL+ ++ DIF H Sbjct: 189 IAQKCMNVISVFVELDLMYYK--DIFEH 214 >gi|190571105|ref|YP_001975463.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019628|ref|ZP_03335434.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357377|emb|CAQ54811.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995050|gb|EEB55692.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 206 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 94/203 (46%), Positives = 132/203 (65%), Gaps = 1/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +++ D+PA + +IAVDTE +GL+ RDRLC+VQLS DG +++ A Sbjct: 3 IFIYKDDLPASAIPNDIKSIAVDTEAMGLLHSRDRLCLVQLSFNDGNAHLVQFK-NDYTA 61 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D+ KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ Sbjct: 62 PNLRKILEDKNITKIFHFARFDVSIIHYYLQTWALPCYCTKIASRLVRTYTDNHSLKELC 121 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELL I ++K QQSSDW ++L+D+Q YAASDV++LH ++ + L+R R +LA C Sbjct: 122 LELLDIKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHKIKEKLDLMLERENRKELAEKC 181 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R ELD +GW +VDIF+H Sbjct: 182 FEFLPTRIELDSMGWGSVDIFNH 204 >gi|157825707|ref|YP_001493427.1| ribonuclease D [Rickettsia akari str. Hartford] gi|157799665|gb|ABV74919.1| Ribonuclease D [Rickettsia akari str. Hartford] Length = 203 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 95/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P IA+DTET+GL RD+LC++Q S G+G ++ Sbjct: 2 TIKIYQNDLPDNFELE--GDIAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFVNQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKALLLDKTRCKIFHFARFDLASIKQYLSIDLENIFCTKISSKLVRTYTDNHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W D+LS EQ +YAA DV++LH L+ + L R R +LA Sbjct: 120 CRELLNINISKQQQSSYWGTDNLSSEQKEYAAKDVLYLHQLKDMLQKMLLRENRLELAHD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDL+GW +DIF H Sbjct: 180 IFRFLPTRANLDLIGWNEIDIFMH 203 >gi|157803820|ref|YP_001492369.1| ribonuclease D [Rickettsia canadensis str. McKiel] gi|157785083|gb|ABV73584.1| ribonuclease D [Rickettsia canadensis str. McKiel] Length = 203 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 95/204 (46%), Positives = 131/204 (64%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P R +A+DTET+GL RD+LC++Q S G+G ++ Sbjct: 2 TIKIYQNDLPNN--FRLGGDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFENQNYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKALLSDKSRCKIFHFARFDLAAIKKYLEIELENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+ + L + R +LA Sbjct: 120 CRELLNINISKQQQSSYWRADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRFELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 F+ RA LDLLGW +DIF H Sbjct: 180 IFRFVPTRANLDLLGWNEIDIFMH 203 >gi|86608835|ref|YP_477597.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557377|gb|ABD02334.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 210 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 98/185 (52%), Positives = 129/185 (69%), Gaps = 3/185 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTET+GL+P+RDRLC+VQ++ G V ++R++ G K AP L +L+ EKIFHY Sbjct: 27 LAVDTETMGLIPQRDRLCVVQIANSAGEVVLLRLSRGVKQAPFLAQLLMAPSIEKIFHYA 86 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 RFD+A+L Y G+R PVFCTKIAS+L RTYT++HGLKD + EL G+ ++K QSSDW A Sbjct: 87 RFDLAMLRYHLGIRAWPVFCTKIASKLARTYTSKHGLKDVVSELCGVELNKTAQSSDWGA 146 Query: 143 -DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201 LS EQL+YAA+DV +L +R + E L+R R +LA C L ELDLLG+ NV Sbjct: 147 VHALSAEQLEYAANDVRYLIPVRHKLAEMLRREERWELAQQCFQHLPTLVELDLLGFSNV 206 Query: 202 DIFSH 206 F H Sbjct: 207 --FEH 209 >gi|157964505|ref|YP_001499329.1| ribonuclease D [Rickettsia massiliae MTU5] gi|157844281|gb|ABV84782.1| Ribonuclease D [Rickettsia massiliae MTU5] Length = 203 Score = 191 bits (485), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P +A+DTET+GL RD+LC++Q S G+G ++ Sbjct: 2 TIKIYQNDLPNNFELE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+ + L + R +LA Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 +FL RA LDL+GW +DIF + Sbjct: 180 IFHFLPTRANLDLIGWNEIDIFMY 203 >gi|119513593|ref|ZP_01632605.1| 3'-5' exonuclease [Nodularia spumigena CCY9414] gi|119461746|gb|EAW42771.1| 3'-5' exonuclease [Nodularia spumigena CCY9414] Length = 189 Score = 191 bits (485), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 99/187 (52%), Positives = 131/187 (70%), Gaps = 3/187 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 DAIAVDTET+GL+P+RDRLC+VQL +G V IRIA GQ APNL ++ KIFH Sbjct: 5 DAIAVDTETMGLLPQRDRLCLVQLCNPEGKVTAIRIAKGQTEAPNLKILMEAVNVVKIFH 64 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 + RFDIA L + G++V+PVFCTKIAS+L RTYTN+HGLK+ ++EL I + K+ QSSDW Sbjct: 65 FARFDIATLRHNLGIQVQPVFCTKIASKLARTYTNRHGLKEVVQELEHIELDKSSQSSDW 124 Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199 +A +LS+ QL YAA+DV +L ++R + E LQR R ++A C L LDLL ++ Sbjct: 125 GNAANLSEAQLNYAANDVRYLISVRQKLMEMLQREERWEIAQECFQVLPTLVTLDLLQFK 184 Query: 200 NVDIFSH 206 D+F H Sbjct: 185 --DLFEH 189 >gi|67459045|ref|YP_246669.1| ribonuclease D [Rickettsia felis URRWXCal2] gi|67004578|gb|AAY61504.1| Ribonuclease D [Rickettsia felis URRWXCal2] Length = 203 Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 94/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I++++ D+P IA+DTET+GL RD+LC++Q S G+G ++ + Sbjct: 2 NIKIYQDDLPNNFELE--GDIAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFVNQDYS 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKALLLDKTRCKIFHFARFDLAAIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W D+LS EQ +YAA DV++LH L+ + L R R +LA Sbjct: 120 CRELLSINISKQQQSSYWGTDNLSSEQKEYAAKDVLYLHQLKDILQKMLLRENRLELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDL+GW +DIF H Sbjct: 180 IFRFLPTRANLDLIGWNEIDIFMH 203 >gi|157828459|ref|YP_001494701.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933177|ref|YP_001649966.1| ribonuclease D [Rickettsia rickettsii str. Iowa] gi|157800940|gb|ABV76193.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908264|gb|ABY72560.1| ribonuclease D [Rickettsia rickettsii str. Iowa] Length = 203 Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 93/204 (45%), Positives = 131/204 (64%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P +A+DTET+GL RD+LC++Q S G+G ++ Sbjct: 2 TIKIYQNDLPNNFTLE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APN+ +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNVKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+ + L + R +LA Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDL+GW +DIF H Sbjct: 180 IFRFLPIRANLDLIGWNEIDIFMH 203 >gi|15892510|ref|NP_360224.1| ribonuclease D [Rickettsia conorii str. Malish 7] gi|34580497|ref|ZP_00141977.1| ribonuclease D [Rickettsia sibirica 246] gi|229586700|ref|YP_002845201.1| Ribonuclease D [Rickettsia africae ESF-5] gi|238650888|ref|YP_002916744.1| ribonuclease D [Rickettsia peacockii str. Rustic] gi|15619670|gb|AAL03125.1| ribonuclease D [Rickettsia conorii str. Malish 7] gi|28261882|gb|EAA25386.1| ribonuclease D [Rickettsia sibirica 246] gi|228021750|gb|ACP53458.1| Ribonuclease D [Rickettsia africae ESF-5] gi|238624986|gb|ACR47692.1| ribonuclease D [Rickettsia peacockii str. Rustic] Length = 203 Score = 191 bits (484), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P + +A+DTET+GL RD+LC++Q S G+G ++ Sbjct: 2 TIKIYQNDLPNN--FKLEGDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APN+ +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNVKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+ + L + R +LA Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDL+GW +DIF H Sbjct: 180 IFRFLPIRANLDLIGWNEIDIFMH 203 >gi|239947292|ref|ZP_04699045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] gi|239921568|gb|EER21592.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] Length = 203 Score = 190 bits (483), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 94/204 (46%), Positives = 129/204 (63%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P +A+DTET+GL RD+LC++Q S G+G + Sbjct: 2 TIKIYQNDLPNNFELE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHFVHFTNQDYI 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGL D Sbjct: 60 APNLKALLLDKTRCKIFHFARFDLAFIKKYLSIDLENIFCTKISSKLVRTYTDSHGLNDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+ + L + R +LA Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDLLGW +DIF H Sbjct: 180 IFRFLPTRANLDLLGWNEIDIFMH 203 >gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] Length = 209 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 137/206 (66%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +V + D+ +Y++ AIAVDTET+GL+P+RDRLC+VQL +G V +IRIA GQ Sbjct: 6 FQVSDRDLSDAALGQYLESTAIAVDTETMGLLPQRDRLCLVQLCNLEGKVTVIRIAKGQT 65 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL + K+FH+ RFDIA L G++V PVFCTKIAS+L RTYTN+HGLKD Sbjct: 66 EAPNLKKLFEAANVVKVFHFARFDIATLRANLGIQVSPVFCTKIASKLARTYTNRHGLKD 125 Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++EL + + K+ QSSDW +A LS+ QL YAA+DV +L +++ + TE L+R R +A Sbjct: 126 VVQELEKVELDKSSQSSDWGNAVSLSEAQLSYAANDVRYLLSVQQKLTEMLKREERWKIA 185 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C FL LDLL ++ D+F H Sbjct: 186 QECFEFLPTIVSLDLLQFK--DLFEH 209 >gi|86605802|ref|YP_474565.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab] gi|86554344|gb|ABC99302.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab] Length = 210 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 96/186 (51%), Positives = 129/186 (69%), Gaps = 3/186 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTET+GL+P+RDRLC+VQ++ G V ++R++ G K AP+L +L D EKIFHY Sbjct: 27 LAVDTETMGLIPQRDRLCVVQIANAAGEVVLLRLSRGVKQAPHLARLLTDPNIEKIFHYA 86 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141 RFD+A+L Y G++ PVFCTKIAS+L RTYT++H LKD + EL G+ ++K QSSDW + Sbjct: 87 RFDLAMLRYHLGIQAWPVFCTKIASKLARTYTSKHSLKDVVGELCGVELNKTAQSSDWGN 146 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201 LS EQL+YAA+DV +L +R + + LQR R +LA C L ELDLLG+ NV Sbjct: 147 VQALSPEQLEYAANDVRYLIPVRHKLAQMLQREERWELAQRCFQHLPTLVELDLLGYGNV 206 Query: 202 DIFSHS 207 F H Sbjct: 207 --FEHQ 210 >gi|51473610|ref|YP_067367.1| ribonuclease D [Rickettsia typhi str. Wilmington] gi|51459922|gb|AAU03885.1| ribonuclease D [Rickettsia typhi str. Wilmington] Length = 203 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/204 (46%), Positives = 131/204 (64%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I++++ D+P + IAVDTET+GL RD+LC++Q S G+G ++ Sbjct: 2 NIKIYQNDLPNN--FKLEGDIAVDTETMGLNIHRDKLCLLQFSNGNGAAHLVHFINQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W D+LS EQ +YAA DV++LH L+ + L R R +LA Sbjct: 120 CRELLNINISKQQQSSYWGTDNLSLEQKEYAAKDVLYLHQLKDILQKMLFRENRLELAHE 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL R LDL+GW+ +DIF+H Sbjct: 180 IFRFLPTRVNLDLIGWDQIDIFTH 203 >gi|58040278|ref|YP_192242.1| ribonuclease D [Gluconobacter oxydans 621H] gi|58002692|gb|AAW61586.1| Ribonuclease D [Gluconobacter oxydans 621H] Length = 214 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 99/210 (47%), Positives = 139/210 (66%), Gaps = 7/210 (3%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AA 58 I +++GD+P + + +A+DTET+GL P RDRLC+VQLS GDG +++I + Sbjct: 5 NAIHLYDGDLPDDFDLGPL--VAIDTETMGLNPHRDRLCLVQLSAGDGEAHLVQIKPVSM 62 Query: 59 GQK--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 G + + PNL +L D+ K+ H+ RFD+AVL F + + V CTKIA+RL T+T++ Sbjct: 63 GGRGYDCPNLKALLTDDSVTKLMHFARFDVAVLQNAFNITIPSVICTKIAARLVYTFTDR 122 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 HGL ++LLG+ ISK QQSSDW A L+ +QL+YAASDV++LHAL + L R R Sbjct: 123 HGLAYLCRDLLGVEISKHQQSSDWGAQTLTPDQLRYAASDVLYLHALWDKLEAMLIRENR 182 Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206 DLA +C +FL R LDL+G+E DIFSH Sbjct: 183 RDLAQACYDFLPARCRLDLMGYEEPDIFSH 212 >gi|282899306|ref|ZP_06307275.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] gi|281195763|gb|EFA70691.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] Length = 209 Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 139/206 (67%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +V +GD+ + Y+ DA+AVDTET+GL+P+RDRLC+VQL +G V +RIA GQ Sbjct: 6 FQVVDGDLDYPTLSEYLRSDALAVDTETMGLLPQRDRLCLVQLCNPEGKVTAVRIAKGQT 65 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +APNL +L K+FH+ RFD+A L + + V+PVFCTKIAS+L RTYTN+HGLK+ Sbjct: 66 HAPNLQQLLESTDVVKVFHFARFDLATLRHNLKIHVQPVFCTKIASKLARTYTNRHGLKE 125 Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++EL + + K+ QSSDW + LSD QL YAA+DV +L +L+ + ++ LQR R LA Sbjct: 126 LVQELEQVELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREERWQLA 185 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C +FL LDLL ++ ++F H Sbjct: 186 QECFSFLPTLVSLDLLQFK--ELFEH 209 >gi|220907657|ref|YP_002482968.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425] gi|219864268|gb|ACL44607.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425] Length = 217 Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 98/208 (47%), Positives = 141/208 (67%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 T +V++ D+PA+ + ++ D IAVDTET+GL P+RDRLC+VQL+ G + +IRI G Sbjct: 12 TDFQVYDRDLPADTLSYFLTADRIAVDTETMGLKPQRDRLCLVQLAHPQGLITVIRIGQG 71 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q++AP+L +L K+FH+ RFDI L Y + V+P+FCTKIAS+L RTY+ +HGL Sbjct: 72 QRSAPHLKQLLEHPGTTKVFHFARFDITTLRYHLDIWVQPLFCTKIASKLARTYSPRHGL 131 Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 KD ++EL G+ + K QSSDW + ++L++EQL+YA++DV +L A + + E LQR R Sbjct: 132 KDLIRELEGVELDKTVQSSDWGNPNNLTEEQLRYASNDVRYLLAAQAKLVEMLQRENRWQ 191 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + L A LDLL +E IF H Sbjct: 192 LAQECFHCLPTLASLDLLEFEA--IFEH 217 >gi|254422868|ref|ZP_05036586.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335] gi|196190357|gb|EDX85321.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335] Length = 207 Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 104/209 (49%), Positives = 136/209 (65%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M V + D+ + RY+ DAIAVDTET+GL P RDRLC++QL G V IR Sbjct: 1 MENFEVCDYDLTPQLLERYIQADAIAVDTETMGLNPLRDRLCLIQLCDPGGYVCAIRTER 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ +APNL +L ++ KIFH+ RFD+A L + G+ PVFCTKIAS++ RTY+ HG Sbjct: 61 GQSSAPNLKQLLEEKNITKIFHFARFDLATLQHHLGIVTAPVFCTKIASKIARTYSPSHG 120 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK +KEL+GI + K+QQSSDW +A LSDEQL YAA+DV +L+ L+ + TE L+R GR Sbjct: 121 LKSLVKELIGIELDKSQQSSDWGNAAALSDEQLSYAANDVRYLYVLQNKLTEMLKREGRW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + L ELDL + +V F H Sbjct: 181 TLAKQCLDCLPVFVELDLRQFGSV--FEH 207 >gi|282897776|ref|ZP_06305775.1| 3'-5' exonuclease [Raphidiopsis brookii D9] gi|281197455|gb|EFA72352.1| 3'-5' exonuclease [Raphidiopsis brookii D9] Length = 209 Score = 187 bits (475), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 138/206 (66%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +V +GD+ + Y+ DA+AVDTET+GL+P+RDRLC+VQL +G V +RIA GQ Sbjct: 6 FQVLDGDLDHPTLSEYLRSDALAVDTETMGLVPQRDRLCLVQLCNPEGKVTAVRIAKGQT 65 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +APNL +L K+FH+ RFD+A L + + V+PVFCTKIAS+L RTYTN+HGLK+ Sbjct: 66 HAPNLQQLLESTHVVKVFHFARFDLATLRHNLKIYVQPVFCTKIASKLARTYTNRHGLKE 125 Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++EL + + K+ QSSDW + LSD QL YAA+DV +L +L+ + ++ LQR R L Sbjct: 126 LVQELEQLELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREERWQLV 185 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C +FL LDLL ++ D+F H Sbjct: 186 QECFSFLPTLVSLDLLQFK--DLFEH 209 >gi|15604287|ref|NP_220803.1| hypothetical protein RP422 [Rickettsia prowazekii str. Madrid E] gi|3860979|emb|CAA14879.1| unknown [Rickettsia prowazekii] gi|292572036|gb|ADE29951.1| Ribonuclease D [Rickettsia prowazekii Rp22] Length = 203 Score = 187 bits (475), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 94/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I++++ D+P+ + IAVDTET+GL RD+LC++Q S G+G ++ Sbjct: 2 NIKIYQNDLPSN--FKLEGDIAVDTETMGLNIHRDKLCLLQFSNGNGEAHLVHFINQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKMLLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W D LS EQ +YAA DV++LH L+ + L R R +LA Sbjct: 120 CRELLNINISKQQQSSYWGTDHLSLEQKEYAAKDVLYLHQLKDILQKMLLRENRLELAHD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL R LDL+GW+ +DIF H Sbjct: 180 IFRFLPTRVHLDLIGWDQIDIFMH 203 >gi|298491354|ref|YP_003721531.1| 3'-5' exonuclease ['Nostoc azollae' 0708] gi|298233272|gb|ADI64408.1| 3'-5' exonuclease ['Nostoc azollae' 0708] Length = 209 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 137/206 (66%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +V + D+ A + Y+ +AIAVDTET+GL+P+RDRLC+VQL G V I IA GQ Sbjct: 6 FQVSDRDLDAASLSEYLQSEAIAVDTETMGLLPQRDRLCLVQLCNSQGKVTAICIAKGQT 65 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L K+FH+ RFD+A L + ++V+PVFCTKIAS+L RTYTN HGLKD Sbjct: 66 EAPNLKQLLEATHILKVFHFARFDVATLRHNLEIQVQPVFCTKIASKLARTYTNLHGLKD 125 Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++EL + + K+ QSSDW +A +LS+ QL YAA+DV +L ++ + T+ L+R GR +LA Sbjct: 126 VVQELEQVELDKSAQSSDWGNAVNLSETQLSYAANDVRYLLNVQQKLTQMLEREGRWELA 185 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C L LDLL ++ D+F H Sbjct: 186 QQCFQVLPTLVSLDLLQFK--DLFEH 209 >gi|67921652|ref|ZP_00515170.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501] gi|67856764|gb|EAM52005.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501] Length = 214 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 97/208 (46%), Positives = 133/208 (63%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 +V + D+ +E RY+ DA+A+DTET+GL+P+RDRLC+VQL G V IRI G Sbjct: 9 NNFQVCDRDLSSETLERYLKADALAIDTETMGLVPQRDRLCLVQLCDPSGYVTAIRIERG 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q APNL +L ++ KIFHY RFD+ Y F V P+FCTK+AS+L RTYT HGL Sbjct: 69 QTEAPNLKQLLENKNIVKIFHYARFDVGQFKYNFSVETDPIFCTKVASKLARTYTGSHGL 128 Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K ++EL G+ + K+ QSSDW ++ +LS+ QL YAA+DV +L LR Q L+R R + Sbjct: 129 KSLVQELEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIQLREQLITMLKREERWE 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 +A C + ELDL+ ++ DIF H Sbjct: 189 IAQKCMKVIPLFVELDLMYYK--DIFDH 214 >gi|307151178|ref|YP_003886562.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] gi|306981406|gb|ADN13287.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] Length = 209 Score = 185 bits (469), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 102/209 (48%), Positives = 133/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V EGD+ + A+Y+ +AIAVDTET+GL+P RDRLC+VQL G V IRIA Sbjct: 3 LDNFQVLEGDLSDDILAQYLQAEAIAVDTETMGLIPHRDRLCLVQLCDPTGYVTAIRIAK 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQK AP L ++ + K+FH+ RFD+A L + G+ P+FCTKIAS+L RTYT+ HG Sbjct: 63 GQKEAPKLKQLMENNHSIKVFHFARFDVAQLRHHLGIETTPIFCTKIASKLARTYTSSHG 122 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK + EL GI + K QSSDW +A +LS+EQL YAA+DV +L L+ + LQR R Sbjct: 123 LKSLVLELEGIELDKTAQSSDWGNAANLSEEQLSYAANDVRYLLGLKQKLITMLQREDRW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C L LDLL + NV F H Sbjct: 183 QLAQDCFQCLPVIVSLDLLLYPNV--FEH 209 >gi|218440719|ref|YP_002379048.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] gi|218173447|gb|ACK72180.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] Length = 209 Score = 184 bits (467), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 97/209 (46%), Positives = 133/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ E +RY+ DAIAVDTET+GL P RDRLC++QL +G V IR+ Sbjct: 3 LDNFKVLQEDLSDEILSRYLKADAIAVDTETMGLNPHRDRLCLIQLCDPEGYVTAIRVTK 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ+ AP L ++ K+FH+ RFD+A L + FG+ P+FCTKIAS+L RTYT+ HG Sbjct: 63 GQQEAPKLKQLMEASNITKVFHFARFDVAQLRHHFGIETTPIFCTKIASKLARTYTSSHG 122 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK + EL G+ + K QSSDW +AD LS+EQL YAA+DV +L ++ + L R R Sbjct: 123 LKSLVLELEGVELDKTAQSSDWGNADKLSEEQLSYAANDVRYLLGVKEKLISMLNRENRM 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA +C N L LDL ++N IF H Sbjct: 183 ELARNCFNCLPVLVSLDLQFYQN--IFEH 209 >gi|172035932|ref|YP_001802433.1| ribonuclease D [Cyanothece sp. ATCC 51142] gi|171697386|gb|ACB50367.1| ribonuclease D [Cyanothece sp. ATCC 51142] Length = 214 Score = 184 bits (466), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 132/206 (64%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +V + D+ E RY+ A IA+DTET+GL+P+RDRLC+VQL G V IRI GQ+ Sbjct: 11 FQVCDRDLSPETLDRYLQAKAIAIDTETMGLIPQRDRLCLVQLCDPSGYVTAIRIEKGQQ 70 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 A NL +L ++ KIFHY RFD+A Y F + P+FCTK+AS+L RTYT HGLK Sbjct: 71 TAENLKQLLENQNIIKIFHYARFDVAQFKYNFAIETEPIFCTKVASKLARTYTGSHGLKA 130 Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G+ + K+ QSSDW ++ +LS+ QL YAA+DV +L L+ Q LQR R +LA Sbjct: 131 LVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLKEQLITMLQREERWELA 190 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C + ELDL+ ++ DIF H Sbjct: 191 QKCMKVIPLFVELDLMYYK--DIFEH 214 >gi|166365344|ref|YP_001657617.1| ribonuclease D [Microcystis aeruginosa NIES-843] gi|166087717|dbj|BAG02425.1| probable ribonuclease D [Microcystis aeruginosa NIES-843] Length = 209 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 98/209 (46%), Positives = 139/209 (66%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ + +RY V++IAVDTET+GL+P RDRLC++QL G V IR+ Sbjct: 3 LDNFQVCDRDLSDDLLSRYLGVNSIAVDTETMGLIPGRDRLCLIQLCDPSGFVTAIRVFR 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ APNL ++ DE+ EK+FH+ RFD+A L TFG+ +P+FCTKIAS+L RTYT+ HG Sbjct: 63 GQTEAPNLKKVMEDERIEKVFHFARFDVAQLSQTFGIATKPIFCTKIASKLARTYTSSHG 122 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK ++EL GI + K QSSDW +A +L+ +QL YAA+DV +L ++R + LQR R Sbjct: 123 LKSLVQELEGIELDKTAQSSDWGNAANLTPQQLSYAANDVRYLLSVRDKLIVMLQREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C + + LDL ++ DIF H Sbjct: 183 ELAQKCFSCIPIFTALDLQQYK--DIFEH 209 >gi|300867874|ref|ZP_07112515.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506] gi|300334110|emb|CBN57691.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506] Length = 210 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/209 (47%), Positives = 135/209 (64%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 MT V + D+P + Y+ +AIA DTET+GL+P RDRLC+VQL +G V ++RIA Sbjct: 1 MTDFNVCDRDLPDTLLSHYLTAEAIAADTETMGLLPWRDRLCLVQLCDAEGIVTVVRIAK 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ+ APNL ++ KIFH+ RFD+A L Y + V PVFC+KIAS+L RTYT +HG Sbjct: 61 GQREAPNLKKLMEASNIVKIFHFARFDMATLKYHLDIHVAPVFCSKIASKLARTYTGKHG 120 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD ++EL + + K QSSDW +A +LS++QL+YAA+DV +L + R + LQR R Sbjct: 121 LKDLVQELEQVELDKTAQSSDWGNAANLSEKQLRYAANDVRYLISAREKLITMLQREDRW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C L LDLL ++ DIF H Sbjct: 181 QLAQECFQCLPVIVSLDLLQFK--DIFDH 207 >gi|330813574|ref|YP_004357813.1| ribonuclease D related protein [Candidatus Pelagibacter sp. IMCC9063] gi|327486669|gb|AEA81074.1| ribonuclease D related protein [Candidatus Pelagibacter sp. IMCC9063] Length = 205 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/205 (44%), Positives = 131/205 (63%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQK 61 I +++ D+P ++A+D E+LGL + RD+LC++QL GD V I++ Sbjct: 2 NITLYQNDLPENHKLTNAQSVAIDAESLGLNYKGRDKLCLLQLCSGDDEVYIVQFDRNNY 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +PNL +L D KI H+ RF++ +L Y ++ ++CTKIAS+L RTYT++HGL D Sbjct: 62 KSPNLCKILNDNNILKIAHFARFEMGILKYYLNAKIENIYCTKIASKLGRTYTDKHGLYD 121 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 KELL I ++K+QQSSDW DLS+EQ QYAA DV++LH L+ + L+R R LA Sbjct: 122 ITKELLNITLNKSQQSSDWGLKDLSEEQKQYAALDVLYLHKLKEKLDLMLRREKRDQLAK 181 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 C +FL R+ELDL GW+ DIFSH Sbjct: 182 YCFDFLSTRSELDLNGWDE-DIFSH 205 >gi|113475312|ref|YP_721373.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101] gi|110166360|gb|ABG50900.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101] Length = 207 Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 95/209 (45%), Positives = 142/209 (67%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M+ +V + D+ + + Y+ D++AVDTET+GL+PRRDRLC+VQL G V IRI Sbjct: 1 MSDFQVCDRDLTKDILSNYLQADSMAVDTETMGLLPRRDRLCLVQLCDPLGQVTAIRIHK 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ+ APNL ++ K+FH+ RFD+A+L + G++V P+FCTKI+S+L RTYT +HG Sbjct: 61 GQQEAPNLKQLMEANSIVKVFHFARFDVAMLQHYLGIKVSPIFCTKISSKLARTYTGKHG 120 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + EL + + K+ QSSDW +A++L+++QL YAA+DV +L ++R + ++ L+R R Sbjct: 121 LKDLVMELEKVELDKSSQSSDWGNAENLTEKQLNYAANDVRYLLSVREKLSKILKREERW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C L LDLL ++ DIF H Sbjct: 181 ELAQQCFECLPVFVGLDLLQYK--DIFEH 207 >gi|159030499|emb|CAO91403.1| rnd [Microcystis aeruginosa PCC 7806] Length = 209 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 98/209 (46%), Positives = 139/209 (66%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ + +RY V++IAVDTET+GL+P RDRLC++QL G V IRI Sbjct: 3 LDNFQVCDRDLSDDLLSRYLGVNSIAVDTETMGLIPGRDRLCLIQLCDPSGFVTAIRIFR 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ APNL ++ DE+ EK+FH+ RFD+A L TFG+ +P+FCTKIAS+L RTYT+ HG Sbjct: 63 GQTEAPNLKKVMEDERIEKVFHFARFDVAQLSQTFGIATQPIFCTKIASKLARTYTSSHG 122 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK ++EL GI + K QSSDW +A +L+ +QL YAA+DV +L ++R + +QR R Sbjct: 123 LKSLVQELEGIELDKTAQSSDWGNAVNLTPKQLSYAANDVRYLLSVRDKLIVMMQREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C + + LDL ++ DIF H Sbjct: 183 ELAQKCFSCIPIFTALDLQQYK--DIFEH 209 >gi|114327365|ref|YP_744522.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1] gi|114315539|gb|ABI61599.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1] Length = 259 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 99/209 (47%), Positives = 134/209 (64%), Gaps = 7/209 (3%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA---G 59 TI +H D+P + IA+DTET+GL RDRLC++Q+S GDG +++I G Sbjct: 53 TIHLHRHDLPPSLDIGPI--IAIDTETMGLNHHRDRLCLIQISAGDGHAHLVQIVPERLG 110 Query: 60 QKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 K A PNL +L + K+ HY RFD+ +L G+ + V CTKIA++L RT+T++H Sbjct: 111 GKGADCPNLKRLLSNPGCVKLMHYARFDVGILQNALGIAMSNVKCTKIAAKLVRTFTDRH 170 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 GLKD ++LLG+ ISK QQSSDW A +L+ EQ+ YAASDV++LHAL + L R R Sbjct: 171 GLKDLCRDLLGVEISKQQQSSDWGAPELTPEQMAYAASDVLYLHALWNRLEGLLIREDRL 230 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA +C FL RA LD LG++ DIFSH Sbjct: 231 ALAEACFAFLPARARLDYLGYDEPDIFSH 259 >gi|218245974|ref|YP_002371345.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801] gi|218166452|gb|ACK65189.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801] Length = 210 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/209 (47%), Positives = 132/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ E +RY+ AIAVDTET+GL+P+RDRLC+VQL G V IRI Sbjct: 4 LENFQVCDRDLSDETLSRYLAATAIAVDTETMGLIPQRDRLCLVQLCDPSGFVTAIRIER 63 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQK AP L ++ + K+FHY RFD+A L Y FG+ +P+FCTKIAS+L RTYT+ HG Sbjct: 64 GQKEAPKLKQLMEAKTILKVFHYARFDVAQLRYHFGIETQPIFCTKIASKLARTYTSSHG 123 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK ++EL GI + K QSSDW ++ +LS QL YAA+DV +L + + LQR R Sbjct: 124 LKSLVQELEGIELDKTSQSSDWGNSANLSVAQLSYAANDVRYLIPAKEKLITMLQREERW 183 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C N + LDL ++ DIF H Sbjct: 184 QLAEQCFNCIPVFVSLDLEQYK--DIFEH 210 >gi|189184295|ref|YP_001938080.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda] gi|189181066|dbj|BAG40846.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda] Length = 210 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 91/191 (47%), Positives = 124/191 (64%), Gaps = 7/191 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQL--SPGDGTVD-----IIRIAAGQKNAPNLVGMLVDEKR 75 +A+DTET+GL RDRLC++Q D T+D +++ Q N NL +L+D+ R Sbjct: 20 LAIDTETMGLNLIRDRLCLLQFCQESKDDTIDDKEVFLVKFEDQQYNCRNLKKLLMDDGR 79 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KIFH+ RFD+A + Y GV + +FCT +AS+L RTYT+ HGLKD +ELLGI ISK Sbjct: 80 TKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDSHGLKDLCRELLGIQISKQC 139 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 QSSDW L+ +Q +YAA DVV+LH ++ E L R R D+A FL RAELD+ Sbjct: 140 QSSDWGGQSLTSDQEEYAAKDVVYLHRIKNILEEMLIREQRLDIAQKIFKFLPARAELDV 199 Query: 196 LGWENVDIFSH 206 +GW+++DI SH Sbjct: 200 IGWQDIDILSH 210 >gi|17231283|ref|NP_487831.1| ribonuclease D [Nostoc sp. PCC 7120] gi|17132925|dbj|BAB75490.1| ribonuclease D [Nostoc sp. PCC 7120] Length = 209 Score = 178 bits (452), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 134/206 (65%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +V + D+ A+Y+ +AIAVDTET+GL+P+RDRLC++QL +G V IRIA GQ Sbjct: 6 FQVGDRDLSDATVAQYLQSEAIAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRIAQGQT 65 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L K+FH+ RFD+A L + + V+P+FCTKIAS+L RTYTN+HGLKD Sbjct: 66 AAPNLKKLLEATNVLKVFHFARFDVATLLHHLDIHVQPIFCTKIASKLARTYTNRHGLKD 125 Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL + + K+ Q SDW +A +L++ QL YAA+DV +L + + + L+R R +LA Sbjct: 126 LVHELEQVELDKSAQGSDWGNAANLTEAQLSYAANDVRYLLSAQQKLVAMLKREERWELA 185 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C L LDLL ++ D+F H Sbjct: 186 QQCFQVLPTIVSLDLLQFK--DLFEH 209 >gi|257059023|ref|YP_003136911.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802] gi|256589189|gb|ACV00076.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802] Length = 210 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 98/209 (46%), Positives = 132/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ + +RY+ AIAVDTET+GL+P+RDRLC+VQL G V IRI Sbjct: 4 LENFQVCDRDLSDQTLSRYLAATAIAVDTETMGLIPQRDRLCLVQLCDPSGFVTAIRIER 63 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQK AP L ++ + K+FHY RFD+A L Y FG+ +P+FCTKIAS+L RTYT+ HG Sbjct: 64 GQKEAPKLKQLMEAKTILKVFHYARFDVAQLRYHFGIETQPIFCTKIASKLARTYTSSHG 123 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK ++EL GI + K QSSDW ++ +LS QL YAA+DV +L + + LQR R Sbjct: 124 LKSLVQELEGIELDKTSQSSDWGNSANLSVAQLSYAANDVRYLIPAKEKLITMLQREERW 183 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C N + LDL ++ DIF H Sbjct: 184 QLAEQCFNCIPVFVSLDLEQYK--DIFEH 210 >gi|170078658|ref|YP_001735296.1| putative ribonuclease D [Synechococcus sp. PCC 7002] gi|157811866|gb|ABV80286.1| ribonuclease D [Synechococcus sp. PCC 7002] gi|169886327|gb|ACB00041.1| putative ribonuclease D [Synechococcus sp. PCC 7002] Length = 207 Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 98/209 (46%), Positives = 129/209 (61%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M + + D+ E RY+ AIA+DTET+GL P RDRLC+VQL G V IRIA Sbjct: 1 MDQFALFDQDLSLEILERYLKSGAIAIDTETMGLNPYRDRLCLVQLCDDAGYVSAIRIAQ 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ APNL ++ + K+FH+ RFD+A L + FG+ RP FCTKIAS+L RTYT+ HG Sbjct: 61 GQTAAPNLKALMEAPEITKVFHFARFDLAQLRHVFGIETRPFFCTKIASKLGRTYTSSHG 120 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK +KEL+G+ + K+ QSSDW + LS EQL+YA++DV +L + + T LQR R Sbjct: 121 LKALVKELMGVELDKSAQSSDWGNVAVLSAEQLKYASNDVRYLIPMMRKLTAMLQRENRW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 L C L LDL ++NV F H Sbjct: 181 PLMEECLRCLPTFISLDLAFYDNV--FEH 207 >gi|284053636|ref|ZP_06383846.1| 3'-5' exonuclease [Arthrospira platensis str. Paraca] Length = 209 Score = 177 bits (450), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 125/187 (66%), Gaps = 3/187 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+A+DTET+GL+P RDRLC+VQ+ G V IRI GQ+ APNL +L K+FH Sbjct: 25 EALAIDTETMGLLPWRDRLCLVQICDPKGQVVAIRIERGQREAPNLKTLLETTNILKVFH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 + RFD+A L + G+ V PVFCTKIAS+L RTYT +HGLKD + EL G+ + K+ QSSDW Sbjct: 85 FARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHGLKDLIMELEGVELDKSSQSSDW 144 Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199 +A +LS+ QL YAA+DV +L + + + + L+R R DLA C L LDL+ ++ Sbjct: 145 GNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREERWDLALDCFQCLPTIVTLDLMQFD 204 Query: 200 NVDIFSH 206 DIF H Sbjct: 205 --DIFKH 209 >gi|291571594|dbj|BAI93866.1| ribonuclease D [Arthrospira platensis NIES-39] Length = 207 Score = 177 bits (449), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 125/187 (66%), Gaps = 3/187 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+A+DTET+GL+P RDRLC+VQ+ G V IRI GQ+ APNL +L K+FH Sbjct: 23 EALAIDTETMGLLPWRDRLCLVQICDPKGQVVAIRIERGQREAPNLKTLLETTNILKVFH 82 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 + RFD+A L + G+ V PVFCTKIAS+L RTYT +HGLKD + EL G+ + K+ QSSDW Sbjct: 83 FARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHGLKDLIMELEGVELDKSSQSSDW 142 Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199 +A +LS+ QL YAA+DV +L + + + + L+R R DLA C L LDL+ ++ Sbjct: 143 GNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREERWDLALDCFQCLPTIVTLDLMQFD 202 Query: 200 NVDIFSH 206 DIF H Sbjct: 203 --DIFKH 207 >gi|75908135|ref|YP_322431.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] gi|75701860|gb|ABA21536.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] Length = 209 Score = 177 bits (449), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 126/187 (67%), Gaps = 3/187 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +AIAVDTET+GL+P+RDRLC++QL +G V IRIA GQ APNL +L K+FH Sbjct: 25 EAIAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRIARGQTAAPNLKKLLEATNVLKVFH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 + RFD+A L + + V+P+FCTKIAS+L RTYTN+HGLKD + EL + + K+ QSSDW Sbjct: 85 FARFDVATLRHHLDIHVQPIFCTKIASKLARTYTNRHGLKDLVYELEQVELDKSAQSSDW 144 Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199 +A +L+D QL YAA+DV +L + + + L+R R +LA C L LDLL ++ Sbjct: 145 GNAANLTDAQLSYAANDVRYLLSAQQKLVAMLKREERWELAQQCFQVLPTIVSLDLLQFK 204 Query: 200 NVDIFSH 206 D+F H Sbjct: 205 --DLFEH 209 >gi|209524209|ref|ZP_03272759.1| 3'-5' exonuclease [Arthrospira maxima CS-328] gi|209495300|gb|EDZ95605.1| 3'-5' exonuclease [Arthrospira maxima CS-328] Length = 207 Score = 177 bits (449), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 92/187 (49%), Positives = 125/187 (66%), Gaps = 3/187 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+A+DTET+GL+P RDRLC+VQ+ G V IRI GQ+ APNL +L K+FH Sbjct: 23 EALAIDTETMGLLPGRDRLCLVQICDPKGQVVAIRIERGQREAPNLKTLLETANILKVFH 82 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 + RFD+A L + G+ V PVFCTKIAS+L RTYT +HGLKD + EL G+ + K+ QSSDW Sbjct: 83 FARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHGLKDLIMELEGVELDKSSQSSDW 142 Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199 +A +LS+ QL YAA+DV +L + + + + L+R R DLA C L LDL+ ++ Sbjct: 143 GNAANLSENQLNYAANDVRYLLSAKDKLIQMLKREERWDLALDCFQCLPTIVTLDLMQFD 202 Query: 200 NVDIFSH 206 DIF H Sbjct: 203 --DIFKH 207 >gi|254409855|ref|ZP_05023636.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420] gi|196183852|gb|EDX78835.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420] Length = 207 Score = 177 bits (449), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 98/209 (46%), Positives = 133/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M +V + D+P Y+ +AIAVDTET+GL+ +RDRLC+VQL V +IRI Sbjct: 1 MAEFQVCDRDLPDALLKTYLNAEAIAVDTETMGLIYQRDRLCLVQLCDPQDRVTVIRIDK 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 Q APNL +L + K+FH+ RFD+A+L + V+PVFCTKIAS+L RTYTN+HG Sbjct: 61 KQTEAPNLKQLLEAQTVLKVFHFARFDLAILRQNLDIYVQPVFCTKIASKLARTYTNRHG 120 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + +L + + K+ QSSDW + ++LSDEQL+YAA+DV +L ++R + LQR R Sbjct: 121 LKDLVMDLEQVELDKSSQSSDWGNPNNLSDEQLRYAANDVRYLLSVRQKLITMLQREERW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C L LDLL + DIF H Sbjct: 181 QLAQECFEALSVMVSLDLLLYR--DIFEH 207 >gi|158334839|ref|YP_001516011.1| ribonuclease D [Acaryochloris marina MBIC11017] gi|158305080|gb|ABW26697.1| ribonuclease D [Acaryochloris marina MBIC11017] Length = 209 Score = 177 bits (448), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 88/187 (47%), Positives = 128/187 (68%), Gaps = 3/187 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D IAVDTET+GL P RDRLC+VQ+ +G V ++RIA GQ +APNL ++ + K+FH Sbjct: 25 DRIAVDTETMGLKPHRDRLCLVQICNPEGQVTVVRIAQGQMDAPNLKQLMESDTVLKVFH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 + RFDIA L + + P+FCTKIAS+L RTY+ +HGLK+ ++EL+G + K+ QSSDW Sbjct: 85 FARFDIATLLHHLDIETMPIFCTKIASKLVRTYSPRHGLKELVRELVGEELDKSAQSSDW 144 Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199 +A++LS+EQL YA++DV +L + + + L+R R +LA +C L LDL+ ++ Sbjct: 145 GNAENLSEEQLNYASNDVRYLLSAQATLVKMLEREERLELAMACFQCLPTIVTLDLMHFD 204 Query: 200 NVDIFSH 206 N IF H Sbjct: 205 N--IFEH 209 >gi|148284142|ref|YP_001248232.1| ribonuclease D [Orientia tsutsugamushi str. Boryong] gi|146739581|emb|CAM79331.1| ribonuclease D [Orientia tsutsugamushi str. Boryong] Length = 210 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 90/191 (47%), Positives = 123/191 (64%), Gaps = 7/191 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQL-------SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 +A+DTET+GL RDRLC++Q + D V +++ Q N+ NL +L+D R Sbjct: 20 LAIDTETMGLNFARDRLCLLQFCQESKDDNIDDKEVFLVKFEDQQYNSHNLKKLLMDCSR 79 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KIFH+ RFD+A + Y GV + +FCT +AS+L RTYT+ HGLKD +ELLGI ISK Sbjct: 80 TKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDSHGLKDLCRELLGIQISKQC 139 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 QSSDW L+ +Q +YAA DVV+LH ++ E L R R D+A FL RAELD+ Sbjct: 140 QSSDWGRQSLTSDQEEYAAKDVVYLHRIKNILEEMLIREHRLDIAQKIFKFLPARAELDV 199 Query: 196 LGWENVDIFSH 206 +GW+++DI SH Sbjct: 200 IGWQDIDILSH 210 >gi|22298627|ref|NP_681874.1| putative ribonuclease D [Thermosynechococcus elongatus BP-1] gi|22294807|dbj|BAC08636.1| tlr1083 [Thermosynechococcus elongatus BP-1] Length = 211 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/209 (46%), Positives = 134/209 (64%), Gaps = 14/209 (6%) Query: 10 DIPAEC---------AARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 D P EC A +++A +AVDTET+GL RDRLC+VQ+ +G V +++I Sbjct: 4 DFPLECFDYDLSPTALAHFLNADQLAVDTETMGLNIPRDRLCLVQVCDPEGQVAVVKIGR 63 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQK AP+L +L + KIFHY RFD+A L Y G+RV PVFCTKIAS++ RTY+ +HG Sbjct: 64 GQKEAPHLQQLLEHPRITKIFHYARFDLATLRYHLGIRVHPVFCTKIASKIARTYSPRHG 123 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + +LLG+ I K+ QSSDW +A L ++QL+YAA+DV +L LR Q T L+R R Sbjct: 124 LKDLVLDLLGVEIDKSAQSSDWGNATALREDQLRYAANDVRYLIPLRQQLTAMLKREERF 183 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +L + + L +LDL G+ V F H Sbjct: 184 ELVQTALSCLPAIVDLDLAGYTQV--FEH 210 >gi|332709748|ref|ZP_08429707.1| ribonuclease D [Lyngbya majuscula 3L] gi|332351575|gb|EGJ31156.1| ribonuclease D [Lyngbya majuscula 3L] Length = 216 Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 95/209 (45%), Positives = 132/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+P Y+ D++AVDTET+GL+ +RDRLC+VQL G V +RI Sbjct: 10 LKDFQVCDRDLPESICQEYLRADSLAVDTETMGLIYQRDRLCLVQLCDPQGRVTFVRIDK 69 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ AP L +L K+FH+ RFD+A+L G+ V PVFCTKIAS+L RTYT+ HG Sbjct: 70 GQTEAPRLKQLLEATNVLKVFHFARFDVAMLRQNLGIDVNPVFCTKIASKLARTYTSSHG 129 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK+ +KEL I++ K+ QSSDW + +LSD+QL+YAA+DV +L +R + L+R R Sbjct: 130 LKELVKELERIDLDKSAQSSDWGNVANLSDQQLEYAANDVRYLLNVRQKLINMLEREDRW 189 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C L LDLL + D+F H Sbjct: 190 ELAQQCFEALPTMVSLDLLHYR--DVFEH 216 >gi|56750860|ref|YP_171561.1| ribonuclease D [Synechococcus elongatus PCC 6301] gi|81299489|ref|YP_399697.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942] gi|56685819|dbj|BAD79041.1| probable ribonuclease D [Synechococcus elongatus PCC 6301] gi|81168370|gb|ABB56710.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942] Length = 211 Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 97/202 (48%), Positives = 127/202 (62%), Gaps = 5/202 (2%) Query: 8 EGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 E D+ E A+Y AIA+DTE +GL RDRLC+VQL G +RIA GQ APN Sbjct: 12 EQDLTDELLAQYRQSPAIAIDTEAMGLNFHRDRLCLVQLCDSAGITTCVRIAQGQTVAPN 71 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L + D + K+FH+ RFDI L + G+ V+P+FCTKIAS+L RTY++QHGLK L+E Sbjct: 72 LQALCEDPQITKVFHFARFDITALKHGLGIAVQPIFCTKIASKLARTYSSQHGLKSLLQE 131 Query: 126 LLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 L+G+ + K QSSDW +A LS EQ++YA +DV +L A + + T LQR GR LA C Sbjct: 132 LVGVELDKTAQSSDWGNAAALSHEQMRYACNDVRYLLAAQAKLTTMLQREGRWQLAQDCF 191 Query: 185 NFLMDRAELDLLGWENVDIFSH 206 L A LDL + +V F H Sbjct: 192 ACLPTFAALDLAQFGSV--FEH 211 >gi|33866568|ref|NP_898127.1| putative ribonuclease D [Synechococcus sp. WH 8102] gi|33633346|emb|CAE08551.1| putative ribonuclease D [Synechococcus sp. WH 8102] Length = 214 Score = 174 bits (442), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 94/192 (48%), Positives = 124/192 (64%), Gaps = 3/192 (1%) Query: 6 VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ A+ RY+ A+AVDTE +GL+ RDRLC+VQ++ D V IRI GQ +A Sbjct: 13 VFDGDLDADWTERYLRMSALAVDTEAMGLIHGRDRLCLVQIADADDRVCCIRIGLGQTSA 72 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L EK+FH+ RFD+A L G+ V P+FCTK+ SRL RTYT +HGLKD + Sbjct: 73 PNLQRLLEAASVEKVFHFARFDVAALASGLGIAVSPIFCTKVGSRLGRTYTPRHGLKDLV 132 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+ + K QSSDW D+LSD QL YAA+DV +L R + L+R GR DLA Sbjct: 133 MELVGVELDKGAQSSDWGRVDELSDVQLAYAANDVRYLLPARQKLEAMLRREGRWDLAQR 192 Query: 183 CCNFLMDRAELD 194 C + A+LD Sbjct: 193 CFGCIPVIADLD 204 >gi|119487500|ref|ZP_01621110.1| ribonuclease D [Lyngbya sp. PCC 8106] gi|119455669|gb|EAW36805.1| ribonuclease D [Lyngbya sp. PCC 8106] Length = 208 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 94/209 (44%), Positives = 134/209 (64%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M+ +V + DI + + Y+ D +AVDTET+GL+P RDRLC+VQL G V ++IA Sbjct: 1 MSNFQVCDRDISEDILSSYLTADRLAVDTETMGLLPWRDRLCLVQLCDPKGQVTAVKIAK 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 Q AP+L +L K+FH+ RFD+A L Y + V PVFCTKIAS+L RTYT +HG Sbjct: 61 DQTEAPHLKKLLEASNTLKVFHFARFDMATLLYYLDIDVNPVFCTKIASKLARTYTGRHG 120 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK+ ++EL + + K+ QSSDW + +LS++QL YAA+DV +L ++ + L+R R Sbjct: 121 LKELVQELEQVELDKSSQSSDWGNVGNLSEDQLNYAANDVRYLLNVQQKLMVMLEREERL 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 DLA +C + L LDLL ++ DIF H Sbjct: 181 DLAQNCFDCLPTIVTLDLLHYK--DIFEH 207 >gi|260436505|ref|ZP_05790475.1| 3'-5' exonuclease [Synechococcus sp. WH 8109] gi|260414379|gb|EEX07675.1| 3'-5' exonuclease [Synechococcus sp. WH 8109] Length = 225 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 95/204 (46%), Positives = 127/204 (62%), Gaps = 5/204 (2%) Query: 6 VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V + D+ A RY+ + +AVDTE +GL+ RDRLC+VQ++ + V +RI GQ A Sbjct: 24 VFDRDLDAAWTERYLQSPRLAVDTEAMGLIHGRDRLCLVQIADAEDRVACVRIGLGQTEA 83 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L EK+FH+ RFD+A L G+ V PVFCTK+ SRL RTYT +HGLKD + Sbjct: 84 PNLKRLLEAPTVEKVFHFARFDVAALAAGLGIEVNPVFCTKVGSRLGRTYTPRHGLKDLV 143 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+ + K QSSDW D+L+D QL YAA+DV +L R + + L+R GR DLA Sbjct: 144 MELVGVELDKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEKMLRREGRWDLAQR 203 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C + AELD L + IF H Sbjct: 204 CFQCVPVVAELDRLRFHQ--IFEH 225 >gi|88807852|ref|ZP_01123363.1| putative ribonuclease D [Synechococcus sp. WH 7805] gi|88787891|gb|EAR19047.1| putative ribonuclease D [Synechococcus sp. WH 7805] Length = 214 Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 95/204 (46%), Positives = 127/204 (62%), Gaps = 5/204 (2%) Query: 6 VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ E + RY A+AVDTE +GL+ RDRLC+VQ+ V IRIA GQ A Sbjct: 13 VLDGDLNEEWSERYARSTALAVDTEAMGLIHGRDRLCLVQICDDKDQVACIRIALGQTEA 72 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L ++ EK+FH+ RFD+A L G+RV P+FCTK+ SRL RTYT +HGLKD + Sbjct: 73 PRLKALMEATTIEKVFHFARFDVAALATGLGIRVNPLFCTKVGSRLARTYTPRHGLKDLV 132 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+ + K QSSDW D+L+D QL YAA+D +L A R Q L+R GR +LA S Sbjct: 133 MELVGVELDKQAQSSDWGRVDELTDVQLAYAANDARYLLAARRQLEVMLRREGRWELAQS 192 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C + ++LD + V+ F H Sbjct: 193 CFQCIPVMSDLDRFRF--VNTFEH 214 >gi|148238801|ref|YP_001224188.1| ribonuclease D [Synechococcus sp. WH 7803] gi|147847340|emb|CAK22891.1| Ribonuclease D [Synechococcus sp. WH 7803] Length = 214 Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 94/204 (46%), Positives = 127/204 (62%), Gaps = 5/204 (2%) Query: 6 VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ AE + R+ A+AVDTE +GL+ RDRLC+VQ+ V IRIA GQ A Sbjct: 13 VLDGDLNAEWSERFAASTALAVDTEAMGLIHGRDRLCLVQICDDKDQVACIRIALGQSEA 72 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L ++ EK+FH+ RFD+A L G+RV P+FCTK+ SRL RTYT +HGLKD + Sbjct: 73 PRLKALMEAATIEKVFHFARFDVAALATGLGIRVNPIFCTKVGSRLARTYTPRHGLKDLV 132 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+ + K QSSDW D+L+D QL YAA+D +L R Q L+R GR +LA S Sbjct: 133 MELVGVELDKQAQSSDWGRVDELTDVQLAYAANDARYLLPARRQLEVMLRREGRWELAQS 192 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C + ++LD + V+ F H Sbjct: 193 CFQCIPVMSDLDRFRF--VNTFEH 214 >gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803] gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803] Length = 217 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/209 (44%), Positives = 130/209 (62%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 ++ V + D+P + + + +AVDTET+GL P RDRLC+VQ+ +G V +RIA Sbjct: 7 LSQFEVFDYDLPEDVCQQLLACKEVAVDTETMGLNPHRDRLCLVQICDPEGNVTALRIAK 66 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ+ APNL ++ D KIFH+ RFD A L +TF ++ P+FCTKIAS++ RTYT+ HG Sbjct: 67 GQEEAPNLTRLMEDPGITKIFHFARFDTAQLKHTFDIKTYPIFCTKIASKIARTYTSHHG 126 Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK ++EL+G+ + K+ Q SDW +A +LS QL YAA+DV +L LR + + L R R Sbjct: 127 LKTLVQELVGVELDKSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKLEKMLAREDRL 186 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C L LDL + NV F H Sbjct: 187 RLAQRCFECLPVMVTLDLGMYGNV--FEH 213 >gi|113955257|ref|YP_729699.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311] gi|113882608|gb|ABI47566.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311] Length = 214 Score = 171 bits (432), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 89/192 (46%), Positives = 123/192 (64%), Gaps = 3/192 (1%) Query: 6 VHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ A+ A RY A+AVDTE +GL+ RDRLC+VQ+ + V +RIA GQ A Sbjct: 13 VFDGDLDADWAERYSHATALAVDTEAMGLIHGRDRLCLVQICDAEDQVSCVRIALGQTEA 72 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L ++ EK+FH+ RFD+A L G+RV P+FCTK+ SRL RTY+ +HGLK+ + Sbjct: 73 PRLKELMERASIEKVFHFARFDVAALATGLGIRVNPIFCTKVGSRLARTYSPRHGLKEVV 132 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+ + K QSSDW D+LS+ QL YAA+D +L R + E LQR GR +LA Sbjct: 133 MELVGVELDKQAQSSDWGRVDELSETQLAYAANDARYLLPARDRLKEMLQREGRWELAER 192 Query: 183 CCNFLMDRAELD 194 C + ++LD Sbjct: 193 CFECIPVMSDLD 204 >gi|37522692|ref|NP_926069.1| ribonuclease D [Gloeobacter violaceus PCC 7421] gi|35213694|dbj|BAC91064.1| ribonuclease D [Gloeobacter violaceus PCC 7421] Length = 208 Score = 171 bits (432), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 90/200 (45%), Positives = 131/200 (65%), Gaps = 5/200 (2%) Query: 10 DIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 D+ E A Y+ + +AVD+E +GL+P RDRLC+VQL G V ++R++AG A L Sbjct: 11 DLSPEVAGTYLQSGLLAVDSEAMGLLPHRDRLCLVQLCDEAGLVSLVRLSAGLTQASQLQ 70 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L K+FHY RFD+A+L + G+RV+P+ CTK+AS+L RTY+ +HGLKD + E + Sbjct: 71 KVLEAPAVIKLFHYARFDVAMLRHHLGIRVQPIVCTKVASKLARTYSPRHGLKDLVLETV 130 Query: 128 GINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 G+ + K+ QSSDW A +LS+EQL+YAA+DV +L + L+R GR +LA C Sbjct: 131 GVELDKSAQSSDWGAVLELSEEQLRYAANDVRYLIPAWRKLETMLRREGRFELARRCFAH 190 Query: 187 LMDRAELDLLGWENVDIFSH 206 L + +LDLLG+ +V F H Sbjct: 191 LETQVDLDLLGYSSV--FEH 208 >gi|78211959|ref|YP_380738.1| 3'-5' exonuclease [Synechococcus sp. CC9605] gi|78196418|gb|ABB34183.1| 3'-5' exonuclease [Synechococcus sp. CC9605] Length = 214 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/204 (45%), Positives = 125/204 (61%), Gaps = 5/204 (2%) Query: 6 VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V + D+ A RY+ + +AVDTE +GL+ RDRLC+VQ++ + V +RI GQ A Sbjct: 13 VFDRDLDAAWTERYLQSPRLAVDTEAMGLIHGRDRLCLVQIADAEDRVACVRIGLGQTEA 72 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL + EK+FH+ RFD+A L + V PVFCTK+ SRL RTYT +HGLKD + Sbjct: 73 PNLKRLFEAPTVEKVFHFARFDVAALAAGLSIEVNPVFCTKVGSRLGRTYTPRHGLKDLV 132 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+ + K QSSDW D+L+D QL YAA+DV +L R + + L+R GR DLA Sbjct: 133 MELVGVELDKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEQMLRREGRWDLAQR 192 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C + AELD L + IF H Sbjct: 193 CFQCVPVVAELDRLRFHQ--IFEH 214 >gi|116075800|ref|ZP_01473059.1| putative ribonuclease D [Synechococcus sp. RS9916] gi|116067115|gb|EAU72870.1| putative ribonuclease D [Synechococcus sp. RS9916] Length = 214 Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 93/204 (45%), Positives = 126/204 (61%), Gaps = 5/204 (2%) Query: 6 VHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ A A RY A+AVDTE +GL+ RDRLC+VQ+ D V +RI GQ A Sbjct: 13 VFDGDLDAAWAERYGRAKALAVDTEAMGLIHGRDRLCLVQICDPDDHVACVRIGLGQTEA 72 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L ++ + EK+FH+ RFD+A L G+ V P+FCTK+ASRL RTYT +HGLKD + Sbjct: 73 PRLEALMESKAVEKVFHFARFDVAALASGLGIAVNPIFCTKVASRLARTYTPRHGLKDLV 132 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+ + K QSSDW D+L++ QL YAA+D +L R + L+R GR +LA Sbjct: 133 MELVGVELDKQAQSSDWGRVDELTEAQLAYAANDARYLLPARDRLELMLRREGRWELAER 192 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C + A+LD L + V F H Sbjct: 193 CFPCIPVIADLDRLRFNQV--FEH 214 >gi|87124930|ref|ZP_01080777.1| putative ribonuclease D [Synechococcus sp. RS9917] gi|86167250|gb|EAQ68510.1| putative ribonuclease D [Synechococcus sp. RS9917] Length = 213 Score = 167 bits (423), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 90/194 (46%), Positives = 122/194 (62%), Gaps = 3/194 (1%) Query: 6 VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ A A RY A +AVDTE +GL+ RDRLC+VQL GD V +RI GQ A Sbjct: 12 VFDGDLDAAWADRYAKASRLAVDTEAMGLVHGRDRLCLVQLCDGDDNVSCVRIGLGQCEA 71 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L ++ EK+FH+ RFD+A L G+ V P+FCTK+ASRL RTY+ +HGLK+ + Sbjct: 72 PRLKALMEAAAVEKVFHFARFDVAALASGLGIAVDPIFCTKVASRLARTYSPKHGLKEVV 131 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+ + K QSSDW ++LS+ QL YAA+D +L R + L+R GR +LA Sbjct: 132 LELVGVELDKQAQSSDWGRVEELSEAQLAYAANDARYLLPARERLEVMLRREGRWELAQR 191 Query: 183 CCNFLMDRAELDLL 196 C + +ELD L Sbjct: 192 CFRCIPVMSELDRL 205 >gi|116072599|ref|ZP_01469865.1| 3'-5' exonuclease [Synechococcus sp. BL107] gi|116064486|gb|EAU70246.1| 3'-5' exonuclease [Synechococcus sp. BL107] Length = 214 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/192 (46%), Positives = 120/192 (62%), Gaps = 3/192 (1%) Query: 6 VHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ A RY+ ++AVDTE +GL+ RDRLC+VQ++ V +RI GQ A Sbjct: 13 VFDGDLDASWTERYLQMPSLAVDTEAMGLIHGRDRLCLVQIADAQDRVACVRIGLGQSTA 72 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL + EK+FH+ RFD+A L + V+P+FCTK+ SRL RTYT +HGLKD + Sbjct: 73 PNLQRLFEAASVEKVFHFARFDVAALAAGLDIAVQPLFCTKVGSRLGRTYTPRHGLKDLV 132 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+ + K QSSDW D+L+D QL YAA+DV +L R Q L+R GR +LA Sbjct: 133 MELVGVELDKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNQLETMLRREGRWELAQR 192 Query: 183 CCNFLMDRAELD 194 C + AELD Sbjct: 193 CFTCIPVIAELD 204 >gi|78185488|ref|YP_377923.1| 3'-5' exonuclease [Synechococcus sp. CC9902] gi|78169782|gb|ABB26879.1| 3'-5' exonuclease [Synechococcus sp. CC9902] Length = 214 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/192 (46%), Positives = 120/192 (62%), Gaps = 3/192 (1%) Query: 6 VHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ A RY+ +AVDTE +GL+ RDRLC+VQ++ V +RIA GQ A Sbjct: 13 VFDGDLDASWTERYLQMPCLAVDTEAMGLIHGRDRLCLVQIADAQDRVACVRIALGQSTA 72 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL + EK+FH+ RFD+A L + V+P+FCTK+ SRL RTYT +HGLKD + Sbjct: 73 PNLQRLFEAPSVEKVFHFARFDVAALAAGLDIAVQPLFCTKVGSRLGRTYTPRHGLKDLV 132 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+ + K QSSDW D+L+D QL YAA+DV +L R + L+R GR +LA Sbjct: 133 MELVGVELDKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNKLETMLRREGRWELAQR 192 Query: 183 CCNFLMDRAELD 194 C + AELD Sbjct: 193 CFACIPVMAELD 204 >gi|33863970|ref|NP_895530.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313] gi|33635554|emb|CAE21878.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313] Length = 214 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 5/204 (2%) Query: 6 VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ ++ A RY+ AIAVDTE +GL+ RDRLC+VQ+ V +RI GQ +A Sbjct: 13 VFDGDLDSDWANRYLRASAIAVDTEAMGLIHGRDRLCLVQICDPADNVACVRIGLGQTSA 72 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L ++ EK+FH+ RFD+A L G+ V P+FCTK+ASRL RTY+ +HGLK+ + Sbjct: 73 PRLQKLMEAPSVEKVFHFARFDVAALASGLGIYVLPIFCTKVASRLARTYSPRHGLKEVV 132 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+ + K QSSDW ++LSD QL YAA+D +L R + L+R GR ++A Sbjct: 133 MELVGVELDKQAQSSDWGRVEELSDVQLAYAANDARYLLPARQRLEMMLRREGRWEIAQR 192 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C + + AELD L + IF H Sbjct: 193 CFSCIPVIAELDRLRFTQ--IFEH 214 >gi|123969324|ref|YP_001010182.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601] gi|123199434|gb|ABM71075.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601] Length = 211 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/185 (46%), Positives = 118/185 (63%), Gaps = 3/185 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE +GL+ RDRLC+VQ+ I+I ++PNL +L D+K KIFHY Sbjct: 29 LAIDTEAMGLIHGRDRLCLVQICNEFKRTSCIKIELNTSSSPNLKALLEDDKITKIFHYA 88 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141 RFD+A L + + +FCTKIAS+L RTYTN+HGLKD + ELLGI + K+ QSSDW S Sbjct: 89 RFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLINELLGIELDKSSQSSDWGS 148 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201 +DL+ +QL YAA+DV +L L+ L+R R +LA C + A+LD+L + N Sbjct: 149 NEDLTKDQLDYAANDVRYLIEAMLKLKVILKRENRYELAQKCFETVSVHADLDILKFSN- 207 Query: 202 DIFSH 206 IF H Sbjct: 208 -IFEH 211 >gi|78780061|ref|YP_398173.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9312] gi|78713560|gb|ABB50737.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9312] Length = 211 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/185 (46%), Positives = 118/185 (63%), Gaps = 3/185 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE +GL+ RDRLC+VQ+ I+I + +APNL +L DEK KIFHY Sbjct: 29 LAIDTEAMGLIHGRDRLCLVQICNELRRTACIKIELNRSSAPNLKALLEDEKITKIFHYA 88 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141 RFD+A L G+ + +FCTKIAS+L RTYTN+HGLKD + ELLG+ + K+ QSSDW S Sbjct: 89 RFDVAALKCNLGINTKNIFCTKIASKLARTYTNKHGLKDLINELLGVELDKSSQSSDWGS 148 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201 +DL+ +QL YA++DV +L + L R R +LA C + A+LD+L + N Sbjct: 149 KEDLTKDQLDYASNDVRYLIEAMHKLKVILDRENRYELAQKCFKTVSVHADLDILKFSN- 207 Query: 202 DIFSH 206 IF H Sbjct: 208 -IFEH 211 >gi|183220183|ref|YP_001838179.1| ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910303|ref|YP_001961858.1| ribonuclease D-like [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774979|gb|ABZ93280.1| Ribonuclease D-related [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778605|gb|ABZ96903.1| Ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 212 Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 4/203 (1%) Query: 6 VHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ + A + D +AVD E +GL PRRDRLC+VQ+S V +++I GQK A Sbjct: 12 VLQGDLNEDFFEAFKKDDRLAVDCEMMGLNPRRDRLCVVQISDSKNKVALVQILPGQKEA 71 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P++ + ++ KIFH+ R D+ L G++V+ VFCTKIAS+L RTYT++HGLK+ + Sbjct: 72 PHIQKLFESKEITKIFHFARMDMTFLRARLGIKVQNVFCTKIASKLARTYTDKHGLKELI 131 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +E NI K QSSDW L+ +Q+ YA++DV L +L TE + R R +A C Sbjct: 132 REFFEENIDKKNQSSDWGKKILTKDQVDYASTDVRFLISLESILTEMMIRENRFTIAEKC 191 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL + ELDLL E ++F H Sbjct: 192 FGFLETQVELDLL--EVYNLFEH 212 >gi|123967004|ref|YP_001012085.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515] gi|123201370|gb|ABM72978.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515] Length = 213 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 125/206 (60%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I ++ DI Y D+ +AVDTE +GL+ RDRLC++Q+S I+I Sbjct: 10 ITLYNNDITQNLYNIYKDSSYLAVDTEAMGLIHGRDRLCLIQISNEFHLTSCIKIELNNS 69 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 ++P++ + D K KIFHY RFD+A L + +FCTKIAS+L RTYT++HGLK+ Sbjct: 70 DSPHIKKLFEDNKIMKIFHYARFDVAALKCNLNINTNNIFCTKIASKLARTYTHKHGLKE 129 Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL+GI + K+ QSSDW S +DLSD+Q+ YAA+DV +L + L+R GR DLA Sbjct: 130 LIHELIGIELDKSSQSSDWGSCEDLSDKQIDYAANDVKYLIEAMRKLRIILEREGRYDLA 189 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C + +ELD+L + N IF H Sbjct: 190 QKCFQTIPVHSELDILKFSN--IFEH 213 >gi|157414190|ref|YP_001485056.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215] gi|157388765|gb|ABV51470.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215] Length = 211 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/185 (46%), Positives = 117/185 (63%), Gaps = 3/185 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE +GL+ RDRLC+VQ+ G I+I ++ +L +L DEK KIFHY Sbjct: 29 LAIDTEAMGLIHGRDRLCLVQICNEFGRTSCIKIELNTSSSTHLKALLEDEKITKIFHYA 88 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141 RFD+A L + + +FCTKIAS+L RTYTN+HGLKD + ELLGI + K+ QSSDW S Sbjct: 89 RFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLINELLGIELDKSSQSSDWGS 148 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201 +DL+ EQL YAA+DV +L + L+R R +LA C + A+LD+L + N Sbjct: 149 NEDLTKEQLDYAANDVRYLIEAMHKLKVILKRENRYELAQKCFETVSVHADLDILKFSN- 207 Query: 202 DIFSH 206 IF H Sbjct: 208 -IFEH 211 >gi|91070231|gb|ABE11151.1| putative ribonuclease D [uncultured Prochlorococcus marinus clone HF10-11H11] Length = 211 Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 84/185 (45%), Positives = 117/185 (63%), Gaps = 3/185 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE +GL+ RDRLC+VQ+ I+I ++P+L +L D+K KIFHY Sbjct: 29 LAIDTEAMGLIHGRDRLCLVQICNEFNRTSCIKIELNTSSSPHLKALLEDDKITKIFHYA 88 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141 RFD+A L + + +FCTKIAS+L RTYTN+HGLKD + ELLGI + K+ QSSDW S Sbjct: 89 RFDVAALKCNLKINTKNIFCTKIASKLARTYTNKHGLKDLINELLGIELDKSSQSSDWGS 148 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201 +DL+ +QL YAA+DV +L + L+R R +LA C + A+LD+L + N Sbjct: 149 NEDLTKDQLDYAANDVRYLIEAMHKLKVILERENRYELAQKCFETVSVHADLDILKFSN- 207 Query: 202 DIFSH 206 IF H Sbjct: 208 -IFEH 211 >gi|254431401|ref|ZP_05045104.1| RNAse D protein [Cyanobium sp. PCC 7001] gi|197625854|gb|EDY38413.1| RNAse D protein [Cyanobium sp. PCC 7001] Length = 224 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 89/192 (46%), Positives = 120/192 (62%), Gaps = 3/192 (1%) Query: 6 VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ A A Y A +AVDTE +GL+ RDRLC+VQ+ V IR+ GQ +A Sbjct: 17 VFDGDLDAGWAELYAGARALAVDTEAMGLIHGRDRLCLVQICDDADNVCCIRLRRGQSSA 76 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P+L ++ + EK+FH+ RFD+A L G+ V P+FCTKI SRL RTY+ +HGLKD + Sbjct: 77 PHLQALMENAAIEKVFHFARFDVAALAENLGIAVHPIFCTKIGSRLARTYSPRHGLKDVV 136 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G+ + K QSSDW DDLS+ QL YAA DV +L R + L+R R +LA Sbjct: 137 QELVGVELDKRAQSSDWGEVDDLSEAQLAYAAGDVRYLLQARDRLERMLRREERWELAQR 196 Query: 183 CCNFLMDRAELD 194 C L A+LD Sbjct: 197 CFTCLPVFADLD 208 >gi|126697114|ref|YP_001092000.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301] gi|126544157|gb|ABO18399.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301] Length = 211 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 117/185 (63%), Gaps = 3/185 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE +GL+ RDRLC+VQ+ I+I ++P+L +L DEK KIFHY Sbjct: 29 LAIDTEAMGLIHGRDRLCLVQICNEFKRTSCIKIELNTSSSPHLKKLLEDEKITKIFHYA 88 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141 RFD+A L + + +FCTKIAS+L RTYTN+HGLKD + ELLGI + K+ QSSDW S Sbjct: 89 RFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLINELLGIELDKSSQSSDWGS 148 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201 +DL+ +QL YAA+DV +L + L+R R +LA C + A+LD+L + N Sbjct: 149 NEDLTKDQLDYAANDVRYLIEAMHKLKVILEREDRYELAQKCFETVSVHADLDILKFSN- 207 Query: 202 DIFSH 206 IF H Sbjct: 208 -IFEH 211 >gi|254526817|ref|ZP_05138869.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202] gi|221538241|gb|EEE40694.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202] Length = 211 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 117/185 (63%), Gaps = 3/185 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE +GL+ RDRLC+VQ+ G I+I ++ +L +L D+K KIFHY Sbjct: 29 LAIDTEAMGLIHGRDRLCLVQICNEFGRTSCIKIELNTSSSTHLKALLEDDKITKIFHYA 88 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141 RFD+A L + + +FCTKIAS+L RTYTN+HGLKD + ELLGI + K+ QSSDW S Sbjct: 89 RFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLINELLGIELDKSSQSSDWGS 148 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201 +DL+ EQL YAA+DV +L + L+R R +LA C + A+LD+L + N Sbjct: 149 NEDLTKEQLDYAANDVRYLIEAMHKLKVILKRENRYELAQKCFETVPVHADLDILKFSN- 207 Query: 202 DIFSH 206 IF H Sbjct: 208 -IFEH 211 >gi|33862140|ref|NP_893701.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634358|emb|CAE20043.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 213 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/210 (42%), Positives = 125/210 (59%), Gaps = 13/210 (6%) Query: 4 IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I DI + Y D+ +AVDTE +GL+ RDRLC++Q+ I+I Sbjct: 10 INFSHNDINTDLYNLYKDSSYLAVDTEAMGLIHGRDRLCLIQICNELNLTACIKIELNNS 69 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 ++PN+ + D+ KIFHY RFD+A L + R +FCTKIAS+L RTYTN+HGLKD Sbjct: 70 DSPNIKKLFEDKNIMKIFHYARFDVAALRCNLEINTRNIFCTKIASKLARTYTNKHGLKD 129 Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHL----HALRLQFTEKLQRLGR 176 + ELL + + K+ QSSDW S +DLS++Q+ YAA+DV +L H L+L L R GR Sbjct: 130 LINELLEVELDKSSQSSDWGSLEDLSNKQIDYAANDVRYLIETMHKLKLI----LDREGR 185 Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C + +ELD+L + N IF H Sbjct: 186 YELAQKCFKTIPVHSELDILKFSN--IFEH 213 >gi|159904246|ref|YP_001551590.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211] gi|159889422|gb|ABX09636.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211] Length = 214 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 82/186 (44%), Positives = 119/186 (63%), Gaps = 3/186 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 ++A+DTE +GLM RDRLC+VQ+ V IRI QK+AP L +L + +KIFH+ Sbjct: 31 SLAIDTEAMGLMHGRDRLCLVQICDESDNVICIRIERNQKSAPLLKNLLENPSIQKIFHF 90 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 RFD+A L ++V P+FCTK+AS++ RTY+ +HGLK+ + EL+ + + K QSSDW Sbjct: 91 ARFDVAALEVNLDIKVTPIFCTKVASKIGRTYSPRHGLKEVVMELVNVELDKQAQSSDWG 150 Query: 142 A-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200 A +DLS +QL YAA+DV +L + + L+R GR +L T C + +ELD+ + N Sbjct: 151 AVEDLSAKQLAYAANDVRYLIKAKEKLEHMLKREGRWELTTKCFQCIPVMSELDIYRFGN 210 Query: 201 VDIFSH 206 IF H Sbjct: 211 --IFEH 214 >gi|297182779|gb|ADI18933.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0010_09O16] Length = 203 Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 83/205 (40%), Positives = 127/205 (61%), Gaps = 4/205 (1%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T I +H+GD+P + +AVD E LGL RRDRLC++Q+S G+ I+++ Sbjct: 3 TKIELHKGDLPENLDLGTI--VAVDGEFLGLNVRRDRLCLIQVSSGNSDAHIVQLDRENY 60 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 NAPNLV +L D+ +K+FHY R D+ + Y V + C+KI S+L RT+++ H LK Sbjct: 61 NAPNLVKILADKNIKKLFHYARSDLTHIKYYLKTDVNNIECSKIKSKLARTFSDSHSLKT 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +KE +++SK Q+SD+ +LS QL+Y A+DV++LH + + + L+R R DL Sbjct: 121 LIKEFANVDVSKQFQTSDFGG-ELSQGQLKYCANDVIYLHKIHSELDKILEREKRMDLYR 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 C FL R +LDLL +++ DI+SH Sbjct: 180 ECIKFLHTRIKLDLLEFKD-DIWSH 203 >gi|318042597|ref|ZP_07974553.1| ribonuclease [Synechococcus sp. CB0101] Length = 234 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 84/174 (48%), Positives = 111/174 (63%), Gaps = 1/174 (0%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+AVDTE +GL+ RDRLC+VQ+S V IRI GQ AP L ++ K+FH+ Sbjct: 49 ALAVDTEAMGLVHGRDRLCLVQISDDQDNVCCIRILRGQSEAPLLKQLMEHSGIVKVFHF 108 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 RFD+A L G+ V P+FCTK+ASRL RTYTN+HGLK+ + EL G+ + K QSSDW Sbjct: 109 ARFDVAALGEGLGIAVNPLFCTKVASRLARTYTNRHGLKELVSELCGVELDKGAQSSDWG 168 Query: 142 -ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 ++LS+ QL YAA+DV +L R + T+ L+R R DLA + AELD Sbjct: 169 RVEELSETQLAYAANDVRYLLPARERLTQMLEREERLDLAQRSFQCIPVIAELD 222 >gi|148243178|ref|YP_001228335.1| ribonuclease [Synechococcus sp. RCC307] gi|147851488|emb|CAK28982.1| Ribonuclease [Synechococcus sp. RCC307] Length = 217 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 90/208 (43%), Positives = 122/208 (58%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 T V +GD+ E Y A+AVDTE +GL+ RDRLC+VQ+ V IRIA G Sbjct: 10 THFAVFDGDLSPEWFGHYKNAKALAVDTEAMGLIHGRDRLCLVQICDDQDRVCCIRIARG 69 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q AP L ++ EK+FHY RFD+A + G+ V P+FCTK+ASRL RTY+ +HGL Sbjct: 70 QSEAPLLKELMEATGIEKVFHYARFDVAAMASGLGIAVNPIFCTKVASRLARTYSPRHGL 129 Query: 120 KDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + EL+G+++ K QSSDW ++LS++QL YAA+DV +L R + + L R R Sbjct: 130 AAVVSELVGVDLDKQAQSSDWGRVEELSEQQLAYAANDVRYLLPARDRLEQMLVREERWS 189 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C FL DL ++ IF H Sbjct: 190 LAQRC--FLCIPVFSDLDRFQYGSIFEH 215 >gi|87300944|ref|ZP_01083786.1| putative ribonuclease D [Synechococcus sp. WH 5701] gi|87284815|gb|EAQ76767.1| putative ribonuclease D [Synechococcus sp. WH 5701] Length = 228 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 94/205 (45%), Positives = 128/205 (62%), Gaps = 5/205 (2%) Query: 6 VHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V EGD+ AE + A+AVDTE +GL+ RDRLC+VQ++ V IRIA GQ+ A Sbjct: 22 VFEGDLDAEWLSLLAQAPALAVDTEAMGLVHGRDRLCLVQIADHLDNVCCIRIARGQQEA 81 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L ++ EK+FH+ RFD+A L G+ V P+FCTK+ASRL RTY+++HGLK+ + Sbjct: 82 PRLRELMESPAIEKVFHFARFDLAALGEGLGIAVAPLFCTKVASRLARTYSSRHGLKEVV 141 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G+ + K QSSDW ++L + QL YAA+DV +L A R L+R R DLA Sbjct: 142 QELVGVELDKQSQSSDWGRVEELGEAQLVYAANDVRYLLAARHALAAILEREERLDLARR 201 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C L AELD + +V F HS Sbjct: 202 CFACLPVFAELDRSRFGSV--FEHS 224 >gi|317968782|ref|ZP_07970172.1| ribonuclease [Synechococcus sp. CB0205] Length = 225 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 82/163 (50%), Positives = 104/163 (63%), Gaps = 1/163 (0%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+AVDTE +GL+ RDRLC+VQ+S V IRI GQ AP L ++ EK+FH+ Sbjct: 40 ALAVDTEAMGLIHGRDRLCLVQISDDHDNVCCIRIHRGQTEAPLLKELMEAAGIEKVFHF 99 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 RFD+A L + V P+FCTKI SRL RTYTN+HGLKD + EL + + K QSSDW Sbjct: 100 ARFDVAALAEGLDIHVSPIFCTKIGSRLARTYTNRHGLKDLVNELCHVELDKGAQSSDWG 159 Query: 142 -ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ++LS+ QL YAA+DV +L A R + E L R R DLA C Sbjct: 160 RVEELSESQLAYAANDVRYLLAARTRLIEMLVREERLDLAQRC 202 >gi|124023956|ref|YP_001018263.1| ribonuclease D [Prochlorococcus marinus str. MIT 9303] gi|123964242|gb|ABM78998.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9303] Length = 212 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 80/173 (46%), Positives = 112/173 (64%), Gaps = 3/173 (1%) Query: 6 VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V +GD+ ++ A RY+ AIAVDTE +GL+ RDRLC+VQ+ V +RI GQ +A Sbjct: 13 VFDGDLDSDWANRYLRASAIAVDTEAMGLIHGRDRLCLVQICDPADNVACVRIGLGQTSA 72 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L ++ EK+FH+ RFD+A L G+ V P+FCTK+ASRL RTY+ +HGLK+ + Sbjct: 73 PRLQKLMEATSVEKVFHFARFDVAALASGLGISVLPIFCTKVASRLARTYSPRHGLKEVV 132 Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 EL+G+ + K QSSDW ++LSD QL YAA+D +L R + L+R G Sbjct: 133 MELVGVELDKQAQSSDWGRVEELSDVQLAYAANDARYLLPARQRLEMMLRREG 185 >gi|124026737|ref|YP_001015852.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A] gi|123961805|gb|ABM76588.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A] Length = 214 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/208 (41%), Positives = 125/208 (60%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 +T + + DI +E A R A+AVDTE +GL+ RDRLC++Q+ V IRI Sbjct: 9 STFNIFDQDIDSETEIALRSSSALAVDTEAMGLIHGRDRLCLIQICDEFDNVICIRIERN 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q +AP+L +L ++ EK+FH+ RFD+A L + V P+FCTKIAS++ RTY+ +HGL Sbjct: 69 QHSAPHLKSILENKTIEKVFHFARFDVAALASNLNINVNPIFCTKIASKIGRTYSPRHGL 128 Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K+ + E +G+ + K QSSDW DL+ +QL YAA+DV +L + + E L+R R Sbjct: 129 KEVVLETVGVELDKQAQSSDWGKVGDLTQKQLIYAANDVRYLLGAKHKLEEMLKREERWG 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + +ELD + N IF H Sbjct: 189 LAQKCFQCVPVLSELDRRRFTN--IFDH 214 >gi|72382995|ref|YP_292350.1| putative ribonuclease D [Prochlorococcus marinus str. NATL2A] gi|72002845|gb|AAZ58647.1| 3'-5' exonuclease [Prochlorococcus marinus str. NATL2A] Length = 214 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 85/208 (40%), Positives = 125/208 (60%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 +T + + DI +E A R A+AVDTE +GL+ RDRLC++Q+ V IRI Sbjct: 9 STFNIFDQDIDSETEIALRSSSALAVDTEAMGLIHGRDRLCLIQICDEFDNVICIRIERN 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q +AP+L +L ++ EK+FH+ RFD+A L + V P+FCTKIAS++ RTY+ +HGL Sbjct: 69 QHSAPHLKSILENKTIEKVFHFARFDVAALASNLNINVNPIFCTKIASKIGRTYSPRHGL 128 Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K+ + E +G+ + K QSSDW DL+ +QL YA++DV +L + + E L+R R Sbjct: 129 KEVVLETVGVELDKQAQSSDWGKVGDLTQKQLIYASNDVRYLLGAKHKLEEMLKREERWG 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + +ELD + N IF H Sbjct: 189 LAQKCFQCVPVLSELDRRRFTN--IFDH 214 >gi|116327594|ref|YP_797314.1| ribonuclease D-related [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331795|ref|YP_801513.1| ribonuclease D-related [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120338|gb|ABJ78381.1| Ribonuclease D-related [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125484|gb|ABJ76755.1| Ribonuclease D-related [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 212 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/186 (43%), Positives = 109/186 (58%), Gaps = 2/186 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D +AVD E +GL PRRDRLC+VQ+ V +++I QK AP L + + + KIFH Sbjct: 29 DRLAVDCEMMGLNPRRDRLCVVQICDSSNNVSLVQILPDQKEAPLLKSLFENPEIVKIFH 88 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 + R D L Y G+ + VFCTKIAS+L RTYT++HGLKD +KE I K QSSDW Sbjct: 89 FARMDSLFLRYRLGISLENVFCTKIASKLARTYTDKHGLKDLIKEFYDEVIDKKNQSSDW 148 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200 L+ +Q++YA+ DV +L +L + TE L R GR LA L ++D L E Sbjct: 149 GKKILTKDQIEYASGDVKYLISLEQKLTEILVREGRDSLAREAFRCLPVFNQIDWL--EM 206 Query: 201 VDIFSH 206 +F H Sbjct: 207 PSLFEH 212 >gi|24215616|ref|NP_713097.1| ribonuclease D [Leptospira interrogans serovar Lai str. 56601] gi|45657025|ref|YP_001111.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196771|gb|AAN50115.1|AE011455_9 ribonuclease D [Leptospira interrogans serovar Lai str. 56601] gi|45600262|gb|AAS69748.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 212 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/186 (43%), Positives = 110/186 (59%), Gaps = 2/186 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D +AVD E +GL PRRDRLC+VQ+ V +++I QK AP L + + + KIFH Sbjct: 29 DRLAVDCEMMGLNPRRDRLCVVQICDSSNNVSLVQILPDQKEAPLLKSLFENPEIVKIFH 88 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 + R D L Y G+ ++ VFCTKIAS+L RTYT++HGLKD +KE I K QSSDW Sbjct: 89 FARMDSLFLRYRLGINLQNVFCTKIASKLARTYTDKHGLKDLIKEFYDEVIDKKNQSSDW 148 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200 L+ +Q++YA+ DV +L +L + TE L R GR LA L ++D L E Sbjct: 149 GKKILTKDQIEYASGDVKYLISLEQKLTEILVREGRDSLAREAFRCLPVFNQIDWL--EM 206 Query: 201 VDIFSH 206 +F H Sbjct: 207 PTLFEH 212 >gi|91762366|ref|ZP_01264331.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002] gi|91718168|gb|EAS84818.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002] Length = 203 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/203 (40%), Positives = 125/203 (61%), Gaps = 4/203 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I++H D+P + + IAVD E +GL +RD LC++Q+S G+ II++ + +A Sbjct: 5 IKLHTSDLPEDLDLGNI--IAVDGEFMGLNVKRDPLCLIQISTGNSDAHIIQLDREKYDA 62 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L DE KIFHYGR D+A + + + TKIAS+L R+Y++ H LK + Sbjct: 63 PNLNKVLSDESITKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTLI 122 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 KE + +++SK QSSD+ +LS QL+Y A+DV++LH + + + L R R DL SC Sbjct: 123 KEFMNVDVSKQFQSSDFGG-ELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKSC 181 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R +LDL +++ DI+SH Sbjct: 182 LAFLKTRVDLDLALFKD-DIWSH 203 >gi|254456084|ref|ZP_05069513.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211] gi|207083086|gb|EDZ60512.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211] Length = 203 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 82/205 (40%), Positives = 123/205 (60%), Gaps = 4/205 (1%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I++H+ D+P + V +AVD E +GL RRD LC++QLS G+ I+++ Sbjct: 3 NNIKLHQKDLPEDLDLGNV--LAVDGEFMGLNVRRDPLCLIQLSTGNSDAHIVQLDRKSY 60 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL+ +L DE KIFHYGR D+A + Y + TKIAS+L R+Y++ H LK Sbjct: 61 EAPNLIKILKDETITKIFHYGRADMAHIKYYLKTETNNILDTKIASKLARSYSDNHSLKT 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +KE ++ISK QSSD+ L+ QL+Y A+DV++LH + + + L+R R L Sbjct: 121 LIKEFANVDISKQFQSSDFGG-TLTPAQLKYCANDVIYLHQIHDELFKILERENRIKLYK 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 C +FL R +LDL +++ DI+SH Sbjct: 180 DCLSFLKTRVDLDLALFKD-DIWSH 203 >gi|262276742|ref|ZP_06054535.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114] gi|262223845|gb|EEY74304.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114] Length = 206 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 124/208 (59%), Gaps = 4/208 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M + + DI + + + +IA+D E GL P D+L ++QL G V +++ G+ Sbjct: 1 MKNYKFYLSDIDGDTSLKNASSIAIDGEFSGLNPLTDKLHLLQLCDGSDFVHLVKFE-GK 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 NAPNL +L + K +KIFH+GR D+A L + V +F TKI S+++R ++ HGLK Sbjct: 60 YNAPNLKEILENNKIKKIFHFGRADLAFLKQHLDIHVTNIFDTKIGSKISRKFSPHHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSA--DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 D ++L+ IN+SK Q+SDW ++ S++Q+ YA DV++LH ++ + + L+R + + Sbjct: 120 DLCRDLININLSKEYQTSDWGKKIEEYSEDQILYACKDVLYLHKIKNELEKILKRENKLE 179 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C FL R LDL+G DIF H Sbjct: 180 LAEQCFKFLETRTALDLVGLTG-DIFEH 206 >gi|262276702|ref|ZP_06054497.1| ribonuclease D [alpha proteobacterium HIMB114] gi|262225133|gb|EEY75590.1| ribonuclease D [alpha proteobacterium HIMB114] Length = 204 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 120/198 (60%), Gaps = 3/198 (1%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ + + + +IA+D E GL P D+L ++Q+ G V ++ G+ +AP L Sbjct: 10 NDLEDDSSLKNASSIAIDGEFSGLNPLTDKLHLLQICDGSNFVHFVKFD-GEYDAPKLKK 68 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L + +KIFH+GR D+ + + V+ ++ TKIAS++ R +T+ HGLKD ++L+ Sbjct: 69 VLENNSIKKIFHFGRADLGFIKKHLNINVKNIYDTKIASKICRKFTSSHGLKDLSRDLIN 128 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 IN+SK Q+SDW + SD+Q++YAA+DV+HLH ++ + + L R + +LA C FL Sbjct: 129 INLSKEHQTSDWGKKEYSDDQIKYAANDVLHLHKIKEELDKILIRENKVELAEKCFQFLE 188 Query: 189 DRAELDLLGWENVDIFSH 206 R +LDL G DIF H Sbjct: 189 TRTDLDLCGLG--DIFEH 204 >gi|71083204|ref|YP_265923.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062] gi|71062317|gb|AAZ21320.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062] Length = 203 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 125/203 (61%), Gaps = 4/203 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I++H+ D+P + + IAVD E +GL +RD LC++Q+S G+ II++ + +A Sbjct: 5 IKLHKNDLPEDLDLGNI--IAVDGEFMGLNVKRDPLCLIQISTGNSDAHIIQLDREKYDA 62 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D KIFHYGR D+A + + + TKIAS+L R+Y++ H LK + Sbjct: 63 PNLNKVLSDASIIKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTLI 122 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 KE + +++SK QSSD+ +LS QL+Y A+DV++LH + + + L R R DL SC Sbjct: 123 KEFMNVDVSKQFQSSDFGG-ELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKSC 181 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R +LDL +++ DI+SH Sbjct: 182 LAFLKTRVDLDLALFKD-DIWSH 203 >gi|225629620|ref|ZP_03787627.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591525|gb|EEH12558.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 135 Score = 144 bits (364), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 67/130 (51%), Positives = 90/130 (69%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ ELL ++K QQ Sbjct: 4 KIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLELLDTKLNKQQQ 63 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 SSDW ++L+D+Q YAASDV++LH ++ + L+R R +LA C FL R ELDL+ Sbjct: 64 SSDWGDENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKCFEFLPTRIELDLM 123 Query: 197 GWENVDIFSH 206 GWENVDIF+H Sbjct: 124 GWENVDIFNH 133 >gi|33241189|ref|NP_876131.1| putative ribonuclease D [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238719|gb|AAQ00784.1| Ribonuclease D [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 214 Score = 144 bits (363), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 5/207 (2%) Query: 3 TIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + +V E D+ + + +A+DTE +GL+ RDRLC+VQ+ V I+I Q Sbjct: 10 SFKVFETDLDDQWTQHFSTQSCLAIDTEAMGLIHGRDRLCLVQICDEQDNVACIKIQQHQ 69 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A NL ++ D EK+FHY RFD+A + + V +FCTK+AS++ RTY+ +HGLK Sbjct: 70 TKANNLQSLMEDSAIEKVFHYARFDVAAISCNLNIAVNSIFCTKLASKIGRTYSPRHGLK 129 Query: 121 DNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + + EL+GI + K QSSDW +L+++QL+YA +DV +L R Q + L R R +L Sbjct: 130 EVILELVGIELDKQAQSSDWGRVGELTEKQLEYATNDVRYLIQARNQLEKMLIREDRWEL 189 Query: 180 ATSCCNFLMDRAELDLLGWENVDIFSH 206 C + +ELD+ + N IF H Sbjct: 190 TKRCFECISVMSELDIRRFHN--IFEH 214 >gi|297183461|gb|ADI19592.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0770_37D02] Length = 214 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 6/211 (2%) Query: 1 MTTIRVHEGDIPAECAARYVD--AIAVDTETLGL-MPRRDRLCIVQLSPGDGTVDIIRIA 57 MT I + DI AE + ++A+DTE GL +P RD+L +VQ S G+ II+ Sbjct: 5 MTKIYKFQDDIAAEALKELENHSSLAIDTEGSGLQIPHRDKLSLVQFSTGNNDAYIIQPN 64 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 APN+ +L ++K KI HY R+DI+ L Y V+ +F TK+AS+L RTY+ H Sbjct: 65 RKDYKAPNIKKILENDKITKIGHYLRYDISGLEYFLKCNVKNIFDTKLASKLCRTYSQNH 124 Query: 118 GLKDNLKELLGINISKAQQSSDWSA--DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 GLKD E G + K SSDW+ D+L+D QLQY ++DV++LH ++ + + L R Sbjct: 125 GLKDLALEFCGKKLDKRLGSSDWNKNLDELTDAQLQYCSNDVIYLHKIKDELYKMLVREN 184 Query: 176 RSDLATSCCNFLMDRAELDLLGWENVDIFSH 206 R +L +C FL R +LD G+ DIF H Sbjct: 185 RLELYENCIKFLKTRIKLDQSGFAE-DIFQH 214 >gi|167041251|gb|ABZ06007.1| putative 3'-5' exonuclease [uncultured marine microorganism HF4000_005D21] gi|167045755|gb|ABZ10401.1| putative 3'-5' exonuclease [uncultured marine bacterium HF4000_APKG3108] Length = 214 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/211 (38%), Positives = 118/211 (55%), Gaps = 6/211 (2%) Query: 1 MTTIRVHEGDIPAECAARYV--DAIAVDTETLGL-MPRRDRLCIVQLSPGDGTVDIIRIA 57 MT I + DI + ++A+DTE GL +P RD+L +VQ S G+ I++ Sbjct: 5 MTKIYKFQDDISTDALKELEKHSSLAIDTEGSGLQIPHRDKLSLVQFSAGNNDAYIVQPN 64 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 APN+V +L + K KI HY R+D++ L Y V+ +F TKIAS+L RTY+ H Sbjct: 65 RKSYKAPNIVKILENAKITKIGHYLRYDVSGLEYFLKCNVKNIFDTKIASKLCRTYSQNH 124 Query: 118 GLKDNLKELLGINISKAQQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 GLKD E + K SSDW+ + +L+D QLQY ++DV++LH ++ + L R Sbjct: 125 GLKDLALEFCSKKLDKRLGSSDWNKNLYELTDAQLQYCSNDVIYLHKIKDALYKMLVREN 184 Query: 176 RSDLATSCCNFLMDRAELDLLGWENVDIFSH 206 R +L SC FL R +LD G+ DIF H Sbjct: 185 RLELYESCIQFLKTRIKLDQSGFAE-DIFQH 214 >gi|15895183|ref|NP_348532.1| ribonuclease D [Clostridium acetobutylicum ATCC 824] gi|15024889|gb|AAK79872.1|AE007698_6 Ribonuclease D [Clostridium acetobutylicum ATCC 824] gi|325509325|gb|ADZ20961.1| Ribonuclease D [Clostridium acetobutylicum EA 2018] Length = 205 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 69/183 (37%), Positives = 100/183 (54%), Gaps = 4/183 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IA+DTET GL P +D+LC++Q+ + I I N NL+G+L K KIFH+ Sbjct: 26 IAIDTETTGLDPLKDKLCLIQICAKEK---IFLIKYNNSNQKNLIGILQCSKIIKIFHHA 82 Query: 83 RFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 FD+ L + + V CTKIA++L ++ LK L++ L INI K Q S+WS Sbjct: 83 NFDLRFLMKNLKIYNINNVVCTKIAAKLLNGIEIENSLKKLLRKYLNINIDKKLQKSNWS 142 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201 A++L+ EQ+QYA DV++L L +L + LA C +L A L G EN+ Sbjct: 143 AENLTKEQIQYATYDVIYLEKLWRALKAELIKANLYSLAEECFKYLPTNAILHNRGIENI 202 Query: 202 DIF 204 I+ Sbjct: 203 FIY 205 >gi|319950372|ref|ZP_08024289.1| ribonuclease D-like protein [Dietzia cinnamea P4] gi|319435942|gb|EFV91145.1| ribonuclease D-like protein [Dietzia cinnamea P4] Length = 210 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 108/203 (53%), Gaps = 7/203 (3%) Query: 3 TIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 T ++ EGDI A Y+ A IAVDTET GL DRL ++QLS ++R++AG Sbjct: 6 THQILEGDIDAPTFEAYISAGRIAVDTETSGLSWAADRLNLIQLSAQSVGGSLVRLSAGA 65 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--TRTYTNQHG 118 AP L +L KIFH+ FD+ + + + + CTK AS+L + QH Sbjct: 66 --APLLKDLLESRDVVKIFHFAPFDLRFITQLGVAQAQNIRCTKTASKLLDPQLDPKQHS 123 Query: 119 LKDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L+ L LG+ I+K + ++SDWSA LSD Q++YA DV HL L + ++L+ Sbjct: 124 LRALLLRKLGVEITKGEARTSDWSARSLSDSQIRYALDDVAHLERLHSKLEKELEERSLI 183 Query: 178 DLATSCCNFLMDRAELDLLGWEN 200 +L C+++ A L+ G N Sbjct: 184 ELYRQICDYIPIDALLETSGVPN 206 >gi|162146523|ref|YP_001600982.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] gi|209543478|ref|YP_002275707.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] gi|161785098|emb|CAP54642.1| putative Ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] gi|209531155|gb|ACI51092.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] Length = 393 Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 4/170 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE-KIFHY 81 +++DTE + LC+VQL+ D V + +A G AP +G+L+D+ K+FH Sbjct: 34 VSIDTEFVRERTYWPELCLVQLAGQDEVVVVDTLAPGIDLAP--LGVLLDDPEVVKVFHA 91 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 R D+ + Y FG +F T++A+ + + +Q G + + L G +I KA + SDWS Sbjct: 92 ARQDLEIFLYLFGHLPAALFDTQVAA-MVAGFGDQVGYDNLVASLTGAHIDKAHRFSDWS 150 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 A LS+ Q+ YAA+DV HL + E+L+R GR D S L D A Sbjct: 151 ARPLSEAQIAYAAADVTHLRTVYQLLLERLEREGRLDWVASDLAVLSDPA 200 >gi|296117272|ref|ZP_06835863.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769] gi|295976165|gb|EFG82952.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769] Length = 421 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 2/165 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE + LC+VQL+ D V + +A G AP L +L DE K+FH Sbjct: 55 ITIDTEFVRERTYWPELCLVQLASADEVVVVDALAPGMDLAP-LGELLADEGVIKVFHAA 113 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F +P+F T++A+ + Y +Q G + ++G I K+ + SDW+A Sbjct: 114 RQDLEIFLHLFDRLPQPLFDTQVAA-MVAGYGDQVGYDSLVASVVGAQIDKSHRFSDWAA 172 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 LS Q++YAA+DV +L + + +L R GR D T+ + L Sbjct: 173 RPLSAAQIEYAAADVTYLREVYQRLVAQLDREGRKDWMTAEMDVL 217 >gi|296536446|ref|ZP_06898543.1| ribonuclease D [Roseomonas cervicalis ATCC 49957] gi|296263225|gb|EFH09753.1| ribonuclease D [Roseomonas cervicalis ATCC 49957] Length = 394 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 79/154 (51%), Gaps = 2/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + LC+VQL+ + I A G AP L +L D K K+FH Sbjct: 34 VTVDTEFMRERTYWPELCVVQLAGAEDVAVIDAQAEGLDLAP-LGELLADPKVTKVFHAA 92 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + FG RP+F T+IA+ + + +Q ++ L G I KA + SDW+A Sbjct: 93 RQDVEICILRFGAPPRPLFDTQIAA-MVAGFGDQASYDSLVRALAGAQIDKAHRFSDWAA 151 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS Q+ YAA+DV HL + E+L + GR Sbjct: 152 RPLSPAQINYAAADVTHLRRVYTALVERLTQEGR 185 >gi|53803525|ref|YP_114794.1| ribonuclease D [Methylococcus capsulatus str. Bath] gi|53757286|gb|AAU91577.1| ribonuclease D [Methylococcus capsulatus str. Bath] Length = 388 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 8/172 (4%) Query: 10 DIPAECAA--RYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D PAE AA R + IAVDTE + + C++Q++ G I +A ++ Sbjct: 13 DSPAELAAFCRSIGGSPWIAVDTEFMRDKTYYPKFCLLQIANGTQAACIDPLAI--EDLR 70 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + +L + K+FH R D+ + F+ F P+F T++A+ L + Q G + Sbjct: 71 EVECLLFNRAITKVFHAARQDLEIFFHRFRAVPAPIFDTQLAAPLV-GHPEQVGYASLVS 129 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +LG+ + K +DWS LS Q +YAA+DV+HL AL + E+L+RLGR Sbjct: 130 AMLGVTVDKEHTRTDWSQRPLSAAQKEYAANDVIHLAALYPRMREQLERLGR 181 >gi|158425285|ref|YP_001526577.1| ribonuclease D [Azorhizobium caulinodans ORS 571] gi|158332174|dbj|BAF89659.1| ribonuclease D [Azorhizobium caulinodans ORS 571] Length = 383 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 2/167 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE L +LC++Q++ D + I +A G AP ++ +EK +K+FH Sbjct: 21 DFVTVDTEFLRETTFWPKLCVIQVASVDEAIIIDALAEGLDLAP-FFALMGNEKVKKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 GR DI ++++ + PVF T++A+ + Y + ++ + G I K+ + +DW Sbjct: 80 AGRQDIEIVWHLAEIIPHPVFDTQVAA-MVLGYGDSISYDQLVQRITGHAIDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S LS QL YA +DV HL + + E L+ GR+D N L Sbjct: 139 SRRPLSQAQLTYAVADVTHLRDVYKKLMEDLESRGRADWMGEEMNIL 185 >gi|261414901|ref|YP_003248584.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371357|gb|ACX74102.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327506|gb|ADL26707.1| putative ribonuclease D [Fibrobacter succinogenes subsp. succinogenes S85] Length = 386 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 8/172 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D AVDTE + RLC++Q++ G+ I+ G AP + + IFH Sbjct: 27 DMAAVDTEADSMYHYTARLCLIQITIGEHHY-IVDPLCGLDLAPLFKARAM---QTLIFH 82 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKAQQSSD 139 +D+ +L+ T+G + +F T +A+++ QH GL D +KE G + K Q +D Sbjct: 83 GADYDLRLLWQTYGFSPKSIFDTMLAAKIL---GEQHLGLADLVKEYFGDELKKENQRAD 139 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 W+ LS + +YA D +LH L EKLQ+ GR + T CN L++ A Sbjct: 140 WTIRPLSLDMCEYAIHDTFYLHELCAILAEKLQQAGRMNWLTEQCNTLIEHA 191 >gi|306842001|ref|ZP_07474675.1| ribonuclease D [Brucella sp. BO2] gi|306843696|ref|ZP_07476296.1| ribonuclease D [Brucella sp. BO1] gi|306276006|gb|EFM57715.1| ribonuclease D [Brucella sp. BO1] gi|306287929|gb|EFM59346.1| ribonuclease D [Brucella sp. BO2] Length = 385 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ D T + +A G AP ++ DEK K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEKIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF T++A+ + + + ++++ G ++ K+ + +DW Sbjct: 80 AARQDIEIVFHLGNLIPSPVFDTQVAA-MVCGFGDAISYDQLVQKVTGKHLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + L E+LQ+ GRS+ L R DL Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193 >gi|254718869|ref|ZP_05180680.1| Rnd, ribonuclease D [Brucella sp. 83/13] gi|265983854|ref|ZP_06096589.1| ribonuclease D [Brucella sp. 83/13] gi|306837628|ref|ZP_07470498.1| ribonuclease D [Brucella sp. NF 2653] gi|264662446|gb|EEZ32707.1| ribonuclease D [Brucella sp. 83/13] gi|306407277|gb|EFM63486.1| ribonuclease D [Brucella sp. NF 2653] Length = 385 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ D T + +A G AP ++ DEK K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEKIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF T++A+ + + + ++++ G ++ K+ + +DW Sbjct: 80 AARQDIEIVFHLGNLIPSPVFDTQVAA-MVCGFGDAISYDQLVQKVTGKHLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + L E+LQ+ GRS+ L R DL Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193 >gi|254419933|ref|ZP_05033657.1| ribonuclease D [Brevundimonas sp. BAL3] gi|196186110|gb|EDX81086.1| ribonuclease D [Brevundimonas sp. BAL3] Length = 383 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 7/196 (3%) Query: 1 MTTIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 MT I +E A+ AR A I VDTE + RLC++Q + D I +A Sbjct: 1 MTPITTNEAL--ADFCARLATAPFITVDTEFMRETTYWPRLCLIQAASADHAGIIDPMAE 58 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 G P L +L D K K+FH R D+ + F G RP+F T++A+ + + Q Sbjct: 59 GLDLEPFL-DLLRDPKIIKVFHACRQDVEI-FVRLGAMPRPMFDTQVAA-MAAGFGEQVA 115 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 ++++L + + K + +DW+ LSD QL YA DV HL AL + ++L++ GR D Sbjct: 116 YDSLVRQMLRVELDKGSRFTDWARRPLSDSQLVYALGDVTHLAALYPKLRDRLKKEGRLD 175 Query: 179 LATSCCNFLMDRAELD 194 S L+D A D Sbjct: 176 WVMSEMESLIDPALYD 191 >gi|329850483|ref|ZP_08265328.1| ribonuclease D [Asticcacaulis biprosthecum C19] gi|328840798|gb|EGF90369.1| ribonuclease D [Asticcacaulis biprosthecum C19] Length = 417 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 5/177 (2%) Query: 1 MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 MT I + D+ A C A + I VDTE + +LC++Q + D I +A Sbjct: 1 MTPI-TNTNDLIAFCEAIKSAPFITVDTEFMRETTYWPKLCLIQAASEDHAAIIDPLAKS 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P L +L DEK K+FH R D+ + F G P+F T++A+ + Y +Q Sbjct: 60 LDLKPFL-DILADEKILKVFHACRQDMEI-FVNLGTMPMPIFDTQVAA-MAAGYGDQVAY 116 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +++ L I+I K + +DWS LSD+QLQYA DV HL L + ++L R GR Sbjct: 117 DSLVRQKLKIDIDKGSRFTDWSRRPLSDQQLQYALGDVTHLAKLYPKLRDRLAREGR 173 >gi|82699633|ref|YP_414207.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308] gi|82615734|emb|CAJ10730.1| HRDC domain:3'-5' exonuclease:Ribonuclease D [Brucella melitensis biovar Abortus 2308] Length = 385 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ D T + +A G AP ++ DE+ K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDELAPGLDLAP-FFRLMADEEIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF T++A+ + + + ++++ G ++ K+ + +DW Sbjct: 80 AARQDIEIVFHLGNLIPSPVFDTQVAA-MVCGFGDAISYDQLVQKVTGKHLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + L E+LQ+ GRS+ L R DL Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193 >gi|256159482|ref|ZP_05457250.1| Rnd, ribonuclease D [Brucella ceti M490/95/1] gi|256254768|ref|ZP_05460304.1| Rnd, ribonuclease D [Brucella ceti B1/94] gi|261221947|ref|ZP_05936228.1| ribonuclease D [Brucella ceti B1/94] gi|265997910|ref|ZP_06110467.1| ribonuclease D [Brucella ceti M490/95/1] gi|260920531|gb|EEX87184.1| ribonuclease D [Brucella ceti B1/94] gi|262552378|gb|EEZ08368.1| ribonuclease D [Brucella ceti M490/95/1] Length = 385 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ D T + +A G AP ++ DE+ K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF T++A+ + + + ++++ G ++ K+ + +DW Sbjct: 80 AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLMQKVTGKHLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + L E+LQ+ GRS+ L R DL Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193 >gi|161618719|ref|YP_001592606.1| ribonuclease D [Brucella canis ATCC 23365] gi|260566676|ref|ZP_05837146.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|161335530|gb|ABX61835.1| ribonuclease D [Brucella canis ATCC 23365] gi|260156194|gb|EEW91274.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 382 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ D T + +A G AP ++ DE+ K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF T++A+ + + + ++++ G ++ K+ + +DW Sbjct: 80 AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTGKHLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + L E+LQ+ GRS+ L R DL Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193 >gi|23501637|ref|NP_697764.1| ribonuclease D [Brucella suis 1330] gi|254704076|ref|ZP_05165904.1| ribonuclease D [Brucella suis bv. 3 str. 686] gi|261754734|ref|ZP_05998443.1| ribonuclease D [Brucella suis bv. 3 str. 686] gi|23347555|gb|AAN29679.1| ribonuclease D [Brucella suis 1330] gi|261744487|gb|EEY32413.1| ribonuclease D [Brucella suis bv. 3 str. 686] Length = 385 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ D T + +A G AP ++ DE+ K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF T++A+ + + + ++++ G ++ K+ + +DW Sbjct: 80 AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTGKHLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + L E+LQ+ GRS+ L R DL Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193 >gi|288958469|ref|YP_003448810.1| ribonuclease D [Azospirillum sp. B510] gi|288910777|dbj|BAI72266.1| ribonuclease D [Azospirillum sp. B510] Length = 396 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 2/169 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I VDTE L +LC+VQ+ DG V I +A G P L ++ D K+FH Sbjct: 23 ITVDTEFLREKTYWPQLCLVQVGGPDGAVAIDPLAEGIDLTP-LFALMSDPSVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + ++ G P+F T++A+ + + G + + +L G I K+ + +DWS Sbjct: 82 RQDVEIFWHLSGQIPHPLFDTQVAAMVC-GFGESVGYETLVTKLAGARIDKSSRFTDWSH 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 L++ QL YA SDV+HL + +L R GRS L D A Sbjct: 141 RPLTERQLTYALSDVIHLRPAYEKLKRRLARSGRSHWLEEEMAILTDPA 189 >gi|17987486|ref|NP_540120.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M] gi|225852267|ref|YP_002732500.1| ribonuclease D [Brucella melitensis ATCC 23457] gi|256044440|ref|ZP_05447344.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1] gi|256113284|ref|ZP_05454152.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether] gi|256264225|ref|ZP_05466757.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9] gi|260563791|ref|ZP_05834277.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265990860|ref|ZP_06103417.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1] gi|265994696|ref|ZP_06107253.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether] gi|17983183|gb|AAL52384.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M] gi|225640632|gb|ACO00546.1| ribonuclease D [Brucella melitensis ATCC 23457] gi|260153807|gb|EEW88899.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|262765809|gb|EEZ11598.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether] gi|263001644|gb|EEZ14219.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1] gi|263094471|gb|EEZ18293.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9] gi|326408773|gb|ADZ65838.1| ribonuclease D [Brucella melitensis M28] gi|326538491|gb|ADZ86706.1| ribonuclease D [Brucella melitensis M5-90] Length = 385 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ D T + +A G AP ++ DE+ K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF T++A+ + + + ++++ G ++ K+ + +DW Sbjct: 80 AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTGKHLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + L E+LQ+ GRS+ L R DL Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEIAVLTARQTYDL 193 >gi|254689015|ref|ZP_05152269.1| Rnd, ribonuclease D [Brucella abortus bv. 6 str. 870] gi|260754508|ref|ZP_05866856.1| ribonuclease D [Brucella abortus bv. 6 str. 870] gi|260674616|gb|EEX61437.1| ribonuclease D [Brucella abortus bv. 6 str. 870] Length = 384 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ D T + +A G AP ++ DE+ K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF T++A+ + + + ++++ G ++ K+ + +DW Sbjct: 80 AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTGKHLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + L E+LQ+ GRS+ L R DL Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193 >gi|62289703|ref|YP_221496.1| RND, ribonuclease D [Brucella abortus bv. 1 str. 9-941] gi|148560669|ref|YP_001258731.1| ribonuclease D [Brucella ovis ATCC 25840] gi|163843022|ref|YP_001627426.1| ribonuclease D [Brucella suis ATCC 23445] gi|189023953|ref|YP_001934721.1| Rnd, ribonuclease D [Brucella abortus S19] gi|225627251|ref|ZP_03785288.1| ribonuclease D [Brucella ceti str. Cudo] gi|237815192|ref|ZP_04594190.1| ribonuclease D [Brucella abortus str. 2308 A] gi|254693498|ref|ZP_05155326.1| Rnd, ribonuclease D [Brucella abortus bv. 3 str. Tulya] gi|254697150|ref|ZP_05158978.1| Rnd, ribonuclease D [Brucella abortus bv. 2 str. 86/8/59] gi|254701527|ref|ZP_05163355.1| Rnd, ribonuclease D [Brucella suis bv. 5 str. 513] gi|254707023|ref|ZP_05168851.1| Rnd, ribonuclease D [Brucella pinnipedialis M163/99/10] gi|254709868|ref|ZP_05171679.1| Rnd, ribonuclease D [Brucella pinnipedialis B2/94] gi|254713869|ref|ZP_05175680.1| Rnd, ribonuclease D [Brucella ceti M644/93/1] gi|254717074|ref|ZP_05178885.1| Rnd, ribonuclease D [Brucella ceti M13/05/1] gi|254730046|ref|ZP_05188624.1| Rnd, ribonuclease D [Brucella abortus bv. 4 str. 292] gi|256031360|ref|ZP_05444974.1| Rnd, ribonuclease D [Brucella pinnipedialis M292/94/1] gi|256060870|ref|ZP_05451030.1| Rnd, ribonuclease D [Brucella neotomae 5K33] gi|256257265|ref|ZP_05462801.1| Rnd, ribonuclease D [Brucella abortus bv. 9 str. C68] gi|256369183|ref|YP_003106691.1| ribonuclease D [Brucella microti CCM 4915] gi|260168494|ref|ZP_05755305.1| ribonuclease D [Brucella sp. F5/99] gi|260545541|ref|ZP_05821282.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260757729|ref|ZP_05870077.1| ribonuclease D [Brucella abortus bv. 4 str. 292] gi|260761554|ref|ZP_05873897.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59] gi|260883537|ref|ZP_05895151.1| ribonuclease D [Brucella abortus bv. 9 str. C68] gi|261213756|ref|ZP_05928037.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya] gi|261218885|ref|ZP_05933166.1| ribonuclease D [Brucella ceti M13/05/1] gi|261314491|ref|ZP_05953688.1| ribonuclease D [Brucella pinnipedialis M163/99/10] gi|261317409|ref|ZP_05956606.1| ribonuclease D [Brucella pinnipedialis B2/94] gi|261321616|ref|ZP_05960813.1| ribonuclease D [Brucella ceti M644/93/1] gi|261324867|ref|ZP_05964064.1| ribonuclease D [Brucella neotomae 5K33] gi|261752075|ref|ZP_05995784.1| ribonuclease D [Brucella suis bv. 5 str. 513] gi|261757962|ref|ZP_06001671.1| ribonuclease D [Brucella sp. F5/99] gi|265988446|ref|ZP_06101003.1| ribonuclease D [Brucella pinnipedialis M292/94/1] gi|297248110|ref|ZP_06931828.1| ribonuclease D [Brucella abortus bv. 5 str. B3196] gi|62195835|gb|AAX74135.1| Rnd, ribonuclease D [Brucella abortus bv. 1 str. 9-941] gi|148371926|gb|ABQ61905.1| ribonuclease D [Brucella ovis ATCC 25840] gi|163673745|gb|ABY37856.1| ribonuclease D [Brucella suis ATCC 23445] gi|189019525|gb|ACD72247.1| Rnd, ribonuclease D [Brucella abortus S19] gi|225617256|gb|EEH14301.1| ribonuclease D [Brucella ceti str. Cudo] gi|237790029|gb|EEP64239.1| ribonuclease D [Brucella abortus str. 2308 A] gi|255999343|gb|ACU47742.1| ribonuclease D [Brucella microti CCM 4915] gi|260096948|gb|EEW80823.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260668047|gb|EEX54987.1| ribonuclease D [Brucella abortus bv. 4 str. 292] gi|260671986|gb|EEX58807.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59] gi|260873065|gb|EEX80134.1| ribonuclease D [Brucella abortus bv. 9 str. C68] gi|260915363|gb|EEX82224.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya] gi|260923974|gb|EEX90542.1| ribonuclease D [Brucella ceti M13/05/1] gi|261294306|gb|EEX97802.1| ribonuclease D [Brucella ceti M644/93/1] gi|261296632|gb|EEY00129.1| ribonuclease D [Brucella pinnipedialis B2/94] gi|261300847|gb|EEY04344.1| ribonuclease D [Brucella neotomae 5K33] gi|261303517|gb|EEY07014.1| ribonuclease D [Brucella pinnipedialis M163/99/10] gi|261737946|gb|EEY25942.1| ribonuclease D [Brucella sp. F5/99] gi|261741828|gb|EEY29754.1| ribonuclease D [Brucella suis bv. 5 str. 513] gi|264660643|gb|EEZ30904.1| ribonuclease D [Brucella pinnipedialis M292/94/1] gi|297175279|gb|EFH34626.1| ribonuclease D [Brucella abortus bv. 5 str. B3196] Length = 385 Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ D T + +A G AP ++ DE+ K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF T++A+ + + + ++++ G ++ K+ + +DW Sbjct: 80 AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTGKHLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + L E+LQ+ GRS+ L R DL Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193 >gi|139437245|ref|ZP_01771405.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC 25986] gi|133776892|gb|EBA40712.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC 25986] Length = 377 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 7/164 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGT-VDIIRIAAGQKNAPNLVGMLVDEK 74 AR DAIAVDTE L RLC+VQ+ +P + VD + I + L ++ DE Sbjct: 16 AREFDAIAVDTEFLRERTFHPRLCLVQIATPAESVAVDPLVI----DDLSPLAELMADES 71 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+FH D+ V+ +T GV RP+F T++A+ Q ++ G+++ K Sbjct: 72 VTKVFHACSQDMEVMLHTVGVLPRPIFDTQVAAAFL-GERQQISYGALVQTFCGVSLPKT 130 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + +DWS L+D+Q++YA DV +L + +L+ LGR D Sbjct: 131 ESLTDWSRRPLTDKQIEYAIDDVKYLIVAYTEMMSRLRELGRVD 174 >gi|115525280|ref|YP_782191.1| ribonuclease D [Rhodopseudomonas palustris BisA53] gi|115519227|gb|ABJ07211.1| ribonuclease D [Rhodopseudomonas palustris BisA53] Length = 392 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 7/194 (3%) Query: 13 AECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A AR+ I VDTE L LC+VQ++ D V I +A G P ++ Sbjct: 11 AAACARFAKQPVITVDTEFLRETTYYPLLCVVQIASADEAVVIDSLAPGIDLKP-FFELM 69 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 DE K+FH R DI ++++ G+ P+F T++A+ + Y + ++ + G Sbjct: 70 ADEHVLKVFHAARQDIEIVWHRAGILPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHR 128 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K + +DWS L++EQ+ YA SDV HL + L++ GRSD + L Sbjct: 129 PDKTHRFTDWSRRPLTEEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEILTSP 188 Query: 191 AELDL---LGWENV 201 D WE + Sbjct: 189 KTYDFHPERAWERL 202 >gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] Length = 653 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 89/188 (47%), Gaps = 10/188 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTET GL P DRL ++Q+S V +I AA + + L++ EKIFH Sbjct: 99 LAIDTETTGLDPHSDRLRLIQISAPGIPVLVIDCAAFLPDGFACLKELLNTPSEKIFHNA 158 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKAQQSSDW 140 RFD+ L G+ PVF T +A++L R + GL LGI + K +Q+ W Sbjct: 159 RFDLQFLM-GIGIDCFPVFDTMLAAQLLRPCGGPLKAGLAVVADHYLGIKLDKTEQTGSW 217 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQR--LGRSDLATSCCNFLMDRAE-----L 193 + L+ QL YAA D L L L R LGR+ C + R E L Sbjct: 218 DSASLTGSQLAYAALDAWILLKLYDVMNPLLARHGLGRTASIEFACVSAIARTEYDGINL 277 Query: 194 DLLGWENV 201 DL W+ + Sbjct: 278 DLEKWDEL 285 >gi|327194287|gb|EGE61150.1| ribonuclease III protein [Rhizobium etli CNPAF512] Length = 381 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D I +DTE L LC++Q++ V + +A G AP ++ D K K+FH Sbjct: 19 DFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP-FFELMADTKVLKVFH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F + P+F T++A+ + + + + + ++I K+ + +DW Sbjct: 78 AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNVHIDKSSRFTDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 S LSD+QL+YA +DV HL + L +L R GR+ T N L R D+ Sbjct: 137 SRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLTEEMNILEARETYDM 191 >gi|190891177|ref|YP_001977719.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|190696456|gb|ACE90541.1| ribonuclease III protein [Rhizobium etli CIAT 652] Length = 381 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D I +DTE L LC++Q++ V + +A G AP ++ D K K+FH Sbjct: 19 DFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP-FFELMADTKVLKVFH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F + P+F T++A+ + + + + + ++I K+ + +DW Sbjct: 78 AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNVHIDKSSRFTDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 S LSD+QL+YA +DV HL + L +L R GR+ T N L R D+ Sbjct: 137 SRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLTEEMNILEARETYDM 191 >gi|329890110|ref|ZP_08268453.1| ribonuclease D [Brevundimonas diminuta ATCC 11568] gi|328845411|gb|EGF94975.1| ribonuclease D [Brevundimonas diminuta ATCC 11568] Length = 384 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 I VDTE + +LC++Q SP D + I +A G P + +L DE K+FH Sbjct: 23 ITVDTEFMRETTYWPKLCLIQAAASPTDAAI-IDPMAEGLDLEP-FLDILRDESILKVFH 80 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + F G RP+F T++A+ + + +Q + ++++L + K + +DW Sbjct: 81 AARQDVEI-FNKLGAMPRPLFDTQVAA-MAAGFGDQVSYEALVRQMLRQELDKGSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 + LSD QL YA DV HL AL + ++LQ+ GR D S + D A D Sbjct: 139 ARRPLSDAQLTYALGDVTHLSALYPKLRDRLQKEGRLDWVMSEMGAVTDPALYD 192 >gi|86749614|ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2] gi|86572642|gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2] Length = 382 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 5/182 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I VDTE L LC+VQ++ D V + +A G P ++ +E K+FH Sbjct: 23 ITVDTEFLRETTYYPLLCVVQMASRDEAVVVDTLAPGIDLKP-FFDLMANENVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ P+F T++A+ + Y + ++ + G K + +DWS Sbjct: 82 RQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199 L+DEQL YA SDV HL + L++ GRSD + L D WE Sbjct: 141 RPLTDEQLHYAVSDVTHLRDVFAALDADLKQRGRSDWVSEEMEVLTSPKTYDFHPESAWE 200 Query: 200 NV 201 + Sbjct: 201 RL 202 >gi|294852115|ref|ZP_06792788.1| ribonuclease D [Brucella sp. NVSL 07-0026] gi|294820704|gb|EFG37703.1| ribonuclease D [Brucella sp. NVSL 07-0026] Length = 385 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ D T + +A G AP ++ DE+ K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF T++A+ + + + ++++ ++ K+ + +DW Sbjct: 80 AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTSKHLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + L E+LQ+ GRS+ L R DL Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193 >gi|254454077|ref|ZP_05067514.1| ribonuclease D [Octadecabacter antarcticus 238] gi|198268483|gb|EDY92753.1| ribonuclease D [Octadecabacter antarcticus 238] Length = 395 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 7/180 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLV 71 AA+Y + VDTE L +LC++QL+ GD V + +A G AP L + Sbjct: 27 AAKY-PYVTVDTEFLRERTYYSKLCLIQLAYMGEGGDDAVLVDPLAEGLDLAP-LYELFK 84 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 DE K+FH R D+ + F G+ +P+F T++A+ + + Q G + ++++ N+ Sbjct: 85 DENVVKVFHAARQDLEIFFVDQGIIPKPLFDTQVAAMVC-GFGEQAGYETLVRKIAKDNV 143 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K+ + +DWS L+D Q YA +DV HL + + +L++ GR L D A Sbjct: 144 DKSSRFTDWSRRPLTDAQKTYALADVTHLRVIYENLSAELEKSGRKKWVAEEMAVLNDPA 203 >gi|330991792|ref|ZP_08315742.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1] gi|329761260|gb|EGG77754.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1] Length = 395 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 5/182 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + LC+VQL+ G+ V +I A + +L G+L D K+FH Sbjct: 34 VTIDTEFVRERTYWPELCLVQLA-GENDVVVIDTTAPGIDLSSLGGLLDDAGVIKVFHAA 92 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F +F T++A+ + Y +Q G + + LLG+ I K+ + SDWS Sbjct: 93 RQDLEIFLHLFDRLPAALFDTQVAA-MVAGYGDQVGYDNLVWSLLGVQIDKSHRFSDWSV 151 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL---DLLGWE 199 LS Q+ YAA+DV +L + Q +L++ GR D + + L + A L WE Sbjct: 152 RPLSAAQIGYAAADVTYLRQVYGQLLAQLEKEGRLDWVAAELDVLNNPATFRPDPLTLWE 211 Query: 200 NV 201 + Sbjct: 212 KM 213 >gi|153009869|ref|YP_001371084.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188] gi|151561757|gb|ABS15255.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188] Length = 385 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ D T + +A G AP ++ DE K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADETIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF +++A+ + + + ++++ G I K+ + +DW Sbjct: 80 AARQDIEIVFHLGDLIPSPVFDSQVAAMVC-GFGDAISYDQLVQKVTGKQIDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + L E+L++ GRS+ L R D+ Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELEKEGRSEWVNEEMAVLTSRETYDM 193 >gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1] gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1] Length = 392 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 3/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTE + +LC++Q + +I A + + +L DE +K+FH Sbjct: 23 VAVDTEFMRETTYWPKLCLIQAAAPSAEA-VIDPLADDIDLSCFLDILRDESIQKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + F G +P+F T++A + + Q ++++L I I K+ + +DW+ Sbjct: 82 RQDVEI-FNNLGAMPKPLFDTQVAG-MAAGFGEQIAYDALVRQMLKIEIDKSSRFTDWAR 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD QL YA +DV HL L ++L+R GR T N L D A D+ Sbjct: 140 RPLSDSQLTYALADVTHLAKLYPLLRQRLEREGRLAWVTDEMNDLTDPANYDV 192 >gi|239831578|ref|ZP_04679907.1| ribonuclease D [Ochrobactrum intermedium LMG 3301] gi|239823845|gb|EEQ95413.1| ribonuclease D [Ochrobactrum intermedium LMG 3301] Length = 385 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ + T + +A G AP ++ DEK K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMASPNHTALVDALAPGLDLAP-FFSLMADEKVVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F+ + PVF +++A+ + + + ++++ G +I K+ + +DW Sbjct: 80 AARQDIEIVFHLGDLIPSPVFDSQVAAMVC-GFGDAISYDQLVQKVTGKHIDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LS++QL YA +DV +L + L ++L++ GRS+ L R DL Sbjct: 139 RRRPLSEKQLDYALADVTYLRDIYLYLKQELEKEGRSEWVNEEMAVLTSRETYDL 193 >gi|298291118|ref|YP_003693057.1| ribonuclease D [Starkeya novella DSM 506] gi|296927629|gb|ADH88438.1| ribonuclease D [Starkeya novella DSM 506] Length = 385 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 2/156 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I VDTE L +LC+VQL+ + + + +A G AP ++ DEK K+FH G Sbjct: 23 ITVDTEFLRETTFWPKLCVVQLASVEEAIVVDAVADGIDLAP-FFALMSDEKVLKVFHAG 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ PVF T++A+ + + + ++ + G + K+ + +DWS Sbjct: 82 RQDIEIVWHLAGIIPHPVFDTQVAA-MVLGHGDSISYDQLVQRITGEVLDKSLRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 LS Q+ YA +DV HL + L+ L++ GR+D Sbjct: 141 RPLSAAQIAYAEADVTHLRDVFLKLDADLKKRGRAD 176 >gi|209548705|ref|YP_002280622.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534461|gb|ACI54396.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 381 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D I +DTE L LC++Q++ V + +A G AP ++ D K K+FH Sbjct: 19 DFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDLAP-FFELMADPKVLKVFH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F + P+F T++A+ + + + + + ++I K+ + +DW Sbjct: 78 AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNVHIDKSSRFTDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 S LSD+QL+YA +DV HL + L +L R GR+ + + L R DL Sbjct: 137 SRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEMDILEARETYDL 191 >gi|254439069|ref|ZP_05052563.1| ribonuclease D [Octadecabacter antarcticus 307] gi|198254515|gb|EDY78829.1| ribonuclease D [Octadecabacter antarcticus 307] Length = 395 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 7/180 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDII---RIAAGQKNAPNLVGMLV 71 AA+Y + VDTE L +LC++QL+ GDG D + +A G AP L + Sbjct: 27 AAKY-PYVTVDTEFLRERTYYSKLCLIQLAYMGDGDDDAVLLDPLANGLDLAP-LYDLFK 84 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 DE K+FH R D+ + F G+ +P+F T++A+ + + Q G + ++++ N+ Sbjct: 85 DENVVKVFHAARQDLEIFFVDQGIIPKPLFDTQVAAMVC-GFGEQAGYETLVRKIAKDNV 143 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K+ + +DWS LSD Q YA +DV HL + + +L + GR L D A Sbjct: 144 DKSSRFTDWSRRPLSDAQKTYALADVTHLRVIYEYLSAELDKSGRKKWVAEEMAVLNDPA 203 >gi|257063921|ref|YP_003143593.1| ribonuclease D [Slackia heliotrinireducens DSM 20476] gi|256791574|gb|ACV22244.1| ribonuclease D [Slackia heliotrinireducens DSM 20476] Length = 392 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +LC++QL+ + V + + +A N+ + DE Sbjct: 15 ARAHKVLAIDTEFMREKTYWPKLCLIQLATPERAVAVDPLRLHDLSALNV--LFQDENIL 72 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH R D+ ++ G P+F T+IA+ L +T Q G + LG+++ KA Sbjct: 73 KLFHASRQDLEIINIEMGCLPAPIFDTQIAAALL-GHTTQIGYGPLVMNELGVHLKKADS 131 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +DWS L+ QLQYA DV++L L + KL++L R D S Sbjct: 132 YTDWSRRPLTKSQLQYALDDVIYLPKLYDSMSRKLKKLNRMDWLAS 177 >gi|116251369|ref|YP_767207.1| ribonuclease D [Rhizobium leguminosarum bv. viciae 3841] gi|115256017|emb|CAK07098.1| putative ribonuclease D [Rhizobium leguminosarum bv. viciae 3841] Length = 381 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 3/188 (1%) Query: 9 GDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 6 ADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDLAP-FF 64 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 ++ D K K+FH R DI ++F + P+F T++A+ + + + + + Sbjct: 65 ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIK 123 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++I K+ + +DWS LSD+QL YA +DV HL + L +L R GRS + + L Sbjct: 124 NVHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLSLKAELDREGRSSWLSEEMDIL 183 Query: 188 MDRAELDL 195 R D+ Sbjct: 184 ESRETYDM 191 >gi|269215504|ref|ZP_06159358.1| ribonuclease D [Slackia exigua ATCC 700122] gi|269130991|gb|EEZ62066.1| ribonuclease D [Slackia exigua ATCC 700122] Length = 399 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 7/163 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEK 74 AR D +A+DTE L +LC++QL + +V D +++ + L ++VD Sbjct: 18 ARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKV----HDLSPLRDLMVDTS 73 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+FH D+ +LF+ V P+F T++A+ L T Q G + G+ + KA Sbjct: 74 VVKVFHAATQDLDILFHELDVMPDPIFDTQVAAALL-GQTVQVGYGTLVLNECGVRLKKA 132 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DW+ LS Q+ YA DVV+L + Q TE+L+ LGR+ Sbjct: 133 DSFTDWARRPLSSSQINYALEDVVYLPRIYRQLTERLEALGRA 175 >gi|114326875|ref|YP_744031.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1] gi|114315049|gb|ABI61109.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1] Length = 429 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 5/176 (2%) Query: 3 TIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ D+ A C R + +DTE + LC+VQL D I +A Sbjct: 47 TLITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELD 106 Query: 62 NAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP VG +L D K+FH R DI + FG +P+F T++A+ + + +Q G Sbjct: 107 LAP--VGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAA-MVAGFGDQVGYD 163 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + L G +I KA + SDWS LS Q+ YAA+DV HL + ++L++ GR Sbjct: 164 TLVSSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEGR 219 >gi|90423836|ref|YP_532206.1| ribonuclease D [Rhodopseudomonas palustris BisB18] gi|90105850|gb|ABD87887.1| ribonuclease D [Rhodopseudomonas palustris BisB18] Length = 384 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 5/183 (2%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 AI VDTE L LC+VQ++ + V + +A G P ++ ++ K+FH Sbjct: 22 AITVDTEFLRETTYYPLLCVVQMASAEDAVVVDTLAPGIDLKP-FFDLMANDDVLKVFHA 80 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 R DI ++++ G+ P+F T++A+ + Y + ++ + G K + +DW+ Sbjct: 81 ARQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWA 139 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGW 198 L+DEQL YA SDV HL + L++ GRSD + L D W Sbjct: 140 RRPLTDEQLHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEVLTSPKTYDFHPERAW 199 Query: 199 ENV 201 E + Sbjct: 200 ERL 202 >gi|241203984|ref|YP_002975080.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857874|gb|ACS55541.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 381 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D I +DTE L LC++Q++ V + +A G AP ++ D K K+FH Sbjct: 19 DFITIDTEFLRETTFWPELCLIQMASPRTEVLVDPLAKGIDLAP-FFELMADTKVLKVFH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F + P+F T++A+ + + + + + ++I K+ + +DW Sbjct: 78 AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNVHIDKSSRFTDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 S LSD+QL YA +DV HL + L +L R GRS + + L R D+ Sbjct: 137 SRRPLSDKQLDYALADVTHLRDVYLSLKAELDREGRSSWLSEEMDILESRETYDM 191 >gi|218670444|ref|ZP_03520115.1| ribonuclease III protein [Rhizobium etli GR56] Length = 212 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 3/188 (1%) Query: 9 GDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 6 ADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP-FF 64 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 ++ D K K+FH R DI ++F + P+F T++A+ + + + + + Sbjct: 65 ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIK 123 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++I K+ + +DWS LSD+QL+YA +DV HL + L +L R GR+ + + L Sbjct: 124 SVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEMDIL 183 Query: 188 MDRAELDL 195 R D+ Sbjct: 184 EARETYDM 191 >gi|91977418|ref|YP_570077.1| ribonuclease D [Rhodopseudomonas palustris BisB5] gi|91683874|gb|ABE40176.1| ribonuclease D [Rhodopseudomonas palustris BisB5] Length = 392 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 5/182 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I VDTE L LC+VQ++ D V + +A G P ++ +E K+FH Sbjct: 23 ITVDTEFLRETTYYPLLCVVQMASPDEAVVVDTLAPGIDLKP-FFDLMANENVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ P+F T++A+ + Y + ++ + G K + +DWS Sbjct: 82 RQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199 L+DEQL YA SDV HL + L++ RSD + L D WE Sbjct: 141 RPLTDEQLHYAVSDVTHLRDVFAALDADLKKRDRSDWVSEEMEILTSPKTYDFHPESAWE 200 Query: 200 NV 201 + Sbjct: 201 RL 202 >gi|163868507|ref|YP_001609716.1| hypothetical protein Btr_1359 [Bartonella tribocorum CIP 105476] gi|161018163|emb|CAK01721.1| Ribonuclease D [Bartonella tribocorum CIP 105476] Length = 384 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 2/180 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R D + VDTE + +LC++QL+ D TV I IA P +++D+K Sbjct: 17 ALRNSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAPDIDLQP-FFDLMIDKKI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH R DI ++Y GV P+F T+IA + + + ++ G ++ K+ Sbjct: 76 VKVFHSARQDIETIYYLGGVIPSPLFDTQIAGSIC-GFGDSISYDQIVQHCTGHHLDKSS 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 + +DWS LS++QL YA +DV +L + L ++L++ R+ L++ D+ Sbjct: 135 RFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRTHWMDDEVTILLNPKTYDM 194 >gi|148261351|ref|YP_001235478.1| ribonuclease D [Acidiphilium cryptum JF-5] gi|146403032|gb|ABQ31559.1| ribonuclease D [Acidiphilium cryptum JF-5] Length = 392 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 77/169 (45%), Gaps = 2/169 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + LC+VQL + I A G AP L + + K+FH Sbjct: 32 VTVDTEFMREKTYFPELCVVQLGGANDVAVIDAQAEGLDLAP-LGALFANPAVTKVFHAC 90 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI + FG P+F T++A+ + + +Q G + L G I KA + SDWSA Sbjct: 91 RQDIEIFLLKFGAVPAPLFDTQVAA-MVAGFGDQVGYDTLVSSLAGGRIDKAHRFSDWSA 149 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 LS Q+ YAA+DV L + +L R GR D L D A Sbjct: 150 RPLSRAQIAYAAADVTWLRPVYEGLRARLTREGRLDWVAEEAAVLADPA 198 >gi|256827062|ref|YP_003151021.1| ribonuclease D [Cryptobacterium curtum DSM 15641] gi|256583205|gb|ACU94339.1| ribonuclease D [Cryptobacterium curtum DSM 15641] Length = 399 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 5/163 (3%) Query: 16 AARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 A R +D+ +A+DTE L RLC++Q+ D T+ + A L + Sbjct: 31 AKRALDSSVLAIDTEFLREKTYYARLCLLQMQTDDETIIVDPFAVSDLGV--LAPLFQSS 88 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 KI H GR D+ +L G+ +P+F T++A+ L +T Q G + + G+ ++K Sbjct: 89 SIMKIVHSGRQDLEILNREVGLLPQPLFDTQVAAALL-GHTQQIGYGSLVSAVCGVQLAK 147 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +DWS LS Q+ YAA DV++L L T++L+RLGR Sbjct: 148 MDSFTDWSRRPLSASQISYAADDVIYLPQLYHTMTDELERLGR 190 >gi|326404838|ref|YP_004284920.1| ribonuclease D [Acidiphilium multivorum AIU301] gi|325051700|dbj|BAJ82038.1| ribonuclease D [Acidiphilium multivorum AIU301] Length = 392 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 77/169 (45%), Gaps = 2/169 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + LC+VQL + I A G AP L + + K+FH Sbjct: 32 VTVDTEFMREKTYFPELCVVQLGGANDVAVIDAQAEGLDLAP-LGALFANPAVTKVFHAC 90 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI + FG P+F T++A+ + + +Q G + L G I KA + SDWSA Sbjct: 91 RQDIEIFLLKFGAVPTPLFDTQVAA-MVAGFGDQVGYDTLVSSLAGGRIDKAHRFSDWSA 149 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 LS Q+ YAA+DV L + +L R GR D L D A Sbjct: 150 RPLSRAQIAYAAADVTWLRPVYEGLRARLTREGRLDWVAEEAAVLADPA 198 >gi|144899165|emb|CAM76029.1| Ribonuclease D [Magnetospirillum gryphiswaldense MSR-1] Length = 406 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I VDTE + +LC+VQL+ D + +A G AP L ++ + K+FH Sbjct: 30 ITVDTEFMREKTYYPQLCLVQLAGPDEARAVDPLAPGMDLAP-LFELMANPNVLKVFHAA 88 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + G P+F T++A+ + + + G + +L I K+Q+ +DW+ Sbjct: 89 RQDVEIFLHLSGAVPAPLFDTQVAAMVC-GFGDSVGYETLASQLAKARIDKSQRFTDWAL 147 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L+++Q+QYA +DV HL + KL+R GR D Sbjct: 148 RPLTEKQVQYALADVTHLRVAYEKLVRKLERNGRLD 183 >gi|189426679|ref|YP_001953856.1| 3'-5' exonuclease [Geobacter lovleyi SZ] gi|189422938|gb|ACD97336.1| 3'-5' exonuclease [Geobacter lovleyi SZ] Length = 381 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 8/168 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+D E + R+++C++QLS GT VD +R++ + L +L + H Sbjct: 28 LALDLEADSMHHYREKVCLLQLSNRAGTWLVDPLRLS----DLSPLRVLLARPGLRTVLH 83 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 G +DI L FG+ V+ +F T +A++ T + GL L+E GI + K Q +DW Sbjct: 84 GGDYDIRSLHRDFGIVVQQMFDTMVAAQFT--GATEFGLAALLREHFGIELDKRFQKADW 141 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 S L+ E YAA D HL L + +L++LGR + C L+ Sbjct: 142 SKRPLTTEMADYAAHDTAHLLELADRLHARLEQLGRREWVAEECALLV 189 >gi|218515424|ref|ZP_03512264.1| ribonuclease III protein [Rhizobium etli 8C-3] Length = 177 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 3/174 (1%) Query: 9 GDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 6 ADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP-FF 64 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 ++ D K K+FH R DI ++F + P+F T++A+ + + + + + Sbjct: 65 ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIK 123 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++I K+ + +DWS LSD+QL+YA +DV HL + L +L R GR+ T Sbjct: 124 NVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLT 177 >gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264] gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264] Length = 382 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 3/160 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVDTE + +LC++Q + I A G P + +L D K+FH Sbjct: 23 IAVDTEFMRETTYWPKLCLIQAATPTHEAIIDPQADGLDLTP-FLDILRDPAIVKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D + F G +P+F T++A+ + + +Q ++++L I++ K + +DWS Sbjct: 82 RQDTEI-FVKLGAMPKPMFDTQVAA-MAAGFGDQVAYDGLVRQMLKIDLDKGSRFTDWSR 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 LSD QL YA DV HL AL + ++L R GR D TS Sbjct: 140 RPLSDAQLTYAIGDVTHLAALYPKLRDRLAREGRLDWVTS 179 >gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243] gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA] gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1] gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243] gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA] gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1] Length = 381 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 3/160 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A + +A+DTE L +LC++QL+ D T + A L +L +E Sbjct: 16 AMHSSVLAIDTEFLREKTYYAKLCLIQLATDDETAIVDPFAVDDLKV--LAPVLRNENVM 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH G D+ +L GV P+F T++A+ L +T Q G + G+ + K Sbjct: 74 KLFHAGNQDLEILLREVGVLPHPLFDTQVAAALL-GHTQQIGYAALVHAECGVTLKKIDS 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +DWS LSD QL+YAA DVV+L + + +L LGR Sbjct: 133 FTDWSRRPLSDSQLEYAADDVVYLPRMYERMRAQLVELGR 172 >gi|87199358|ref|YP_496615.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444] gi|87135039|gb|ABD25781.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444] Length = 405 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 3/159 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIF 79 D + VDTE + LC+VQ++ I +A G +P L+ +LVD E K+F Sbjct: 24 DFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPLAPGLDMSP-LLDLLVDNEDVLKVF 82 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H G D+ +++ G P+F T+IA + + + Q G + ++ LG++I K + +D Sbjct: 83 HAGGQDVEIIYNLTGKTPHPIFDTQIAM-MAVSQSEQIGYSNLVESWLGLSIDKGARFTD 141 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 WS L++ Q++YA DV HL + + ++L + GR + Sbjct: 142 WSRRPLTERQIEYAIGDVTHLSKIFPKLLKRLIKTGRGE 180 >gi|254466167|ref|ZP_05079578.1| ribonuclease D [Rhodobacterales bacterium Y4I] gi|206687075|gb|EDZ47557.1| ribonuclease D [Rhodobacterales bacterium Y4I] Length = 385 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 9/192 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI---AAGQKNAPNLVGMLVDEKREKI 78 + VDTE L +LC++QL+ G+G D + + A G P L + DE K+ Sbjct: 23 VTVDTEFLRERTYYSKLCLIQLAFSGNGEDDAVLVDPLADGISLEP-LYALFRDENVVKV 81 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH R D+ + + GV +P+F T++A+ + + Q G + +++++ + K + + Sbjct: 82 FHAARQDLEIFWVDAGVFPKPLFDTQVAA-MVCGFGEQAGYETLVRKIVKQGLDKTSRFT 140 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL-- 196 DWS LS+ Q YA +DV HL + +L++ GRS L D A D+ Sbjct: 141 DWSRRPLSEAQKTYALADVTHLRKIYEFLAAELEKSGRSHWVAEELQVLTDPATYDIQPQ 200 Query: 197 -GWENVDIFSHS 207 W+ V ++S Sbjct: 201 EAWQRVKTRTNS 212 >gi|254448397|ref|ZP_05061858.1| ribonuclease D [gamma proteobacterium HTCC5015] gi|198262010|gb|EDY86294.1| ribonuclease D [gamma proteobacterium HTCC5015] Length = 384 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 3/156 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE L +LC++Q++ D I +A + L +L DE K+ H Sbjct: 26 LTLDTEFLREKTYYPQLCLIQIANHDLIACIDPLAID--DLTPLYALLHDESIVKVLHAA 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D +L+ + +PVF T++A+ L Y +Q G ++++ G+ + K+Q +DWS Sbjct: 84 VQDQEILYQSSQQPPKPVFDTQVAASLL-GYGDQMGYAKLVEKICGVQLDKSQSRTDWSR 142 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L+++Q+ YAA DV HL + +L+RLGRSD Sbjct: 143 RPLNEKQIDYAADDVRHLREIYQHLKTELERLGRSD 178 >gi|146340329|ref|YP_001205377.1| ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278] gi|146193135|emb|CAL77147.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278] Length = 389 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 8/198 (4%) Query: 9 GDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 D+ A CA A++ I VDTE L LC+VQ++ D V I +A G + Sbjct: 15 ADLAAACARLAQH-PVITVDTEFLRETTYYPLLCVVQMASQDEAVVIDALAEGI-DLKAF 72 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 ++ +EK K+FH R DI ++++ G+ P+F T++A+ + Y + ++ + Sbjct: 73 FELMANEKVLKVFHAARQDIEIIWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERI 131 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 G K + +DWS L+ EQ YA +DV HL + L++ GRSD + Sbjct: 132 TGHRPDKTHRFTDWSRRPLTKEQAHYAEADVTHLRDVFAALDTDLKKRGRSDWVSEEMEI 191 Query: 187 LMDRAELDL---LGWENV 201 L D WE + Sbjct: 192 LTSPKTYDFHPERAWERL 209 >gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium tumefaciens str. C58] gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium tumefaciens str. C58] Length = 388 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE L LC+VQ++ V + +A G P + ++ + K+FH Sbjct: 21 ITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDLTP-MFELMANPNVVKVFHAA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ P+F T++A+ + + + ++++ + I K+ + +DWS Sbjct: 80 RQDIEIIYHLGGLIPHPIFDTQVAA-MVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 L+++QL YA +DV HL + L +L+R GRS T N L R D+ Sbjct: 139 RPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLWLTEEMNILESRDTYDM 191 >gi|222148187|ref|YP_002549144.1| ribonuclease D [Agrobacterium vitis S4] gi|221735175|gb|ACM36138.1| ribonuclease D [Agrobacterium vitis S4] Length = 384 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE L LC++Q++ D V + +A G AP ++ + K+FH Sbjct: 21 ITIDTEFLRETTFWPELCLIQMASPDLEVIVDPLAEGLDLAP-FFKLMANGDVIKVFHAA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++F+ + P+F T++A+ + + + ++++ I+I K+ + +DWS Sbjct: 80 RQDIEIIFHLGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVQKIKNIHIDKSSRFTDWSR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LS++QL YA +DV HL + L +L+R GR+ + L R DL Sbjct: 139 RPLSEKQLDYALADVTHLRDVYLTLNAELEREGRASWLSEEMAILESRDTYDL 191 >gi|190575218|ref|YP_001973063.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a] gi|190013140|emb|CAQ46772.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a] Length = 359 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 3/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE + +L +VQ++ G + I + G A L L DE K+ H Sbjct: 22 IGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMTEA--LAHWLADESITKVMHSA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ + GV RP+F T+I + L G + + E+ G+ ++K + SDW Sbjct: 80 SEDLVAFRWACGVLPRPLFDTQIGASLA-GIGGGMGYQKLVAEITGVALAKGETRSDWMR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS+ QLQYAA DV HL AL +LQ LGR Sbjct: 139 RPLSESQLQYAADDVEHLFALHDAIDARLQALGR 172 >gi|194366535|ref|YP_002029145.1| ribonuclease D [Stenotrophomonas maltophilia R551-3] gi|194349339|gb|ACF52462.1| ribonuclease D [Stenotrophomonas maltophilia R551-3] Length = 358 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 3/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE + +L +VQ++ G + I + G A L L DE K+ H Sbjct: 22 IGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMAEA--LAPWLADESIIKVMHSA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ + GV RP+F T+I + L G + + E+ G+ ++K + SDW Sbjct: 80 SEDLVAFKWACGVLPRPLFDTQIGASLA-GIGGGMGYQKLVAEITGVALAKGETRSDWMR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS+ QLQYAA DV HL A+ KLQ LGR Sbjct: 139 RPLSESQLQYAADDVEHLFAMHDAIDAKLQALGR 172 >gi|163736203|ref|ZP_02143622.1| ribonuclease D [Phaeobacter gallaeciensis BS107] gi|161390073|gb|EDQ14423.1| ribonuclease D [Phaeobacter gallaeciensis BS107] Length = 385 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI-- 56 M T+ E D+ A C AA D + VDTE L +LC+VQL+ PG G + + + Sbjct: 1 MKTLTSTE-DLQAFCEAAAQHDYVTVDTEFLRERTYYSKLCLVQLAYPGAGDENAVLVDP 59 Query: 57 -AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 A G P L + +E K+FH R D+ + + V +P+F T++A+ + + Sbjct: 60 LADGLSLEP-LYDLFRNETVVKVFHAARQDLEIFWVDAQVFPKPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + +++++ + K + +DWS LSD Q YA +DV HL + +L+R G Sbjct: 118 QVGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKRTG 177 Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 R+ L D A D+ W V ++S Sbjct: 178 RARWVEEELQVLTDPATYDVDPQEAWRRVKTRTNS 212 >gi|163741269|ref|ZP_02148661.1| ribonuclease D [Phaeobacter gallaeciensis 2.10] gi|161385622|gb|EDQ09999.1| ribonuclease D [Phaeobacter gallaeciensis 2.10] Length = 385 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI-- 56 M T+ E D+ A C AA D + VDTE L +LC+VQL+ PG G + + + Sbjct: 1 MKTLTSTE-DLQAFCEAAAQHDYVTVDTEFLRERTYYSKLCLVQLAYPGAGDENAVLVDP 59 Query: 57 -AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 A G P L + +E K+FH R D+ + + V +P+F T++A+ + + Sbjct: 60 LADGLSLEP-LYDLFRNETVVKVFHAARQDLEIFWVDAQVFPKPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + +++++ + K + +DWS LSD Q YA +DV HL + +L+R G Sbjct: 118 QVGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKRTG 177 Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 R+ L D A D+ W V ++S Sbjct: 178 RARWVEEELQVLTDPATYDVDPQEAWRRVKTRTNS 212 >gi|149915004|ref|ZP_01903533.1| ribonuclease D [Roseobacter sp. AzwK-3b] gi|149811192|gb|EDM71029.1| ribonuclease D [Roseobacter sp. AzwK-3b] Length = 385 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 4/168 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI--AAGQKNAPNLVGMLVDE 73 AR D + VDTE L +LC+VQL+ PG G D + + AG + L + DE Sbjct: 17 ARQFDYVTVDTEFLRERTYYSKLCLVQLAVPGTGAEDAVLVDPLAGDLSMAPLYDLFRDE 76 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+FH R D+ + F GV P+F T++ + + + Q G + ++++ + K Sbjct: 77 SVVKVFHAARQDLEIFFVDAGVIPAPLFDTQVTAMVC-GFGEQVGYETLVRKIAKEQLDK 135 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + +DWS L+D Q +YA +DV HL + KL + R T Sbjct: 136 TSRFTDWSRRPLTDAQKKYALADVTHLRDIYEFLARKLAQSDRQKWVT 183 >gi|86357133|ref|YP_469025.1| RNase D protein [Rhizobium etli CFN 42] gi|86281235|gb|ABC90298.1| RNase D protein [Rhizobium etli CFN 42] Length = 381 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D I +DTE L LC++Q++ V + +A G AP ++ D K K+FH Sbjct: 19 DFITIDTEFLRETTFWPELCLIQMASPTMEVLVDPLAKGIDLAP-FFELMADTKVLKVFH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F + P+F T++A+ + + + + + ++I K+ + +DW Sbjct: 78 AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNVHIDKSSRFTDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 S LS++QL+YA +DV HL + L + +L R GR+ + L R D+ Sbjct: 137 SRRPLSEKQLEYALADVTHLRDVYLSLSSQLDREGRTSWLREEMDILEARETYDM 191 >gi|316933724|ref|YP_004108706.1| ribonuclease D [Rhodopseudomonas palustris DX-1] gi|315601438|gb|ADU43973.1| ribonuclease D [Rhodopseudomonas palustris DX-1] Length = 387 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 5/182 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I VDTE L LC+VQ++ + + I +A G P ++ +E+ K+FH Sbjct: 23 ITVDTEFLRETTFYPLLCVVQMASAEDALVIDALADGIDLKP-FFDLMANEQVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ P+F T++A+ + Y + ++ + G K + +DWS Sbjct: 82 RQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199 L+ EQ+ YA SDV HL + L++ GRSD + L + D+ WE Sbjct: 141 RPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEVLTSPSTYDVHPERAWE 200 Query: 200 NV 201 + Sbjct: 201 RL 202 >gi|126731278|ref|ZP_01747085.1| ribonuclease D [Sagittula stellata E-37] gi|126708189|gb|EBA07248.1| ribonuclease D [Sagittula stellata E-37] Length = 385 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA---GQKNAPNLVGMLVDEKREKI 78 I VDTE L +LC++QL+ PG G D + + G P L+ + DE K+ Sbjct: 23 ITVDTEFLRERTYYSKLCLIQLALPGKGDEDAVLVDPMVDGLSLDP-LLELFRDESIVKV 81 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH R D+ + F GV +P+F T++A+ + + Q G + +K + + K+ + + Sbjct: 82 FHAARQDLEIFFIDHGVIPQPLFDTQVAAMVC-GFGEQVGYETLVKRIAKQQLDKSSRFT 140 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 DWS L+D Q YA +DV HL + KL+ GRS L D Sbjct: 141 DWSRRPLTDAQKSYALADVTHLREIYEFLAAKLEESGRSRWVAEELGVLTD 191 >gi|218461991|ref|ZP_03502082.1| RNase D protein [Rhizobium etli Kim 5] Length = 293 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D I +DTE L LC++Q++ V + +A G AP ++ D K K+FH Sbjct: 19 DFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP-FFELMADTKVLKVFH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F + P+F T++A+ + + + + ++I K+ + +DW Sbjct: 78 AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRSKNVHIDKSSRFTDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 S LSD+QL+YA +DV HL + L + +L R GR+ + L R D+ Sbjct: 137 SRRPLSDKQLEYALADVTHLRDVYLSLSSQLDREGRTSWLREEMDVLEARETYDM 191 >gi|39936108|ref|NP_948384.1| ribonuclease D [Rhodopseudomonas palustris CGA009] gi|39649962|emb|CAE28486.1| ribonuclease D [Rhodopseudomonas palustris CGA009] Length = 392 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 5/182 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I VDTE L LC+VQ++ + + I +A G P ++ +E+ K+FH Sbjct: 23 ITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADGIDLKP-FFDLMANEQVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ P+F T++A+ + Y + ++ + G K + +DWS Sbjct: 82 RQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199 L+ EQ+ YA SDV HL + L++ GRSD + L + D+ WE Sbjct: 141 RPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEVLTSPSTYDVHPERAWE 200 Query: 200 NV 201 + Sbjct: 201 RL 202 >gi|240850739|ref|YP_002972139.1| ribonuclease D [Bartonella grahamii as4aup] gi|240267862|gb|ACS51450.1| ribonuclease D [Bartonella grahamii as4aup] Length = 384 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 5/189 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R D + VDTE + +LC++QL+ D TV I IA P +++D+K Sbjct: 17 ALRTSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAPDIDLQP-FFDLMIDKKV 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH R DI +++ GV P+F T+IA + + + ++ G ++ K+ Sbjct: 76 VKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSIC-GFGDSISYDQIVQRCTGHHLDKSS 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 + +DWS LS++QL YA +DV +L + L ++L++ R+ L++ D+ Sbjct: 135 RFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRAHWMDDELTILLNPKTYDM 194 Query: 196 L---GWENV 201 W+ V Sbjct: 195 PEDEAWKKV 203 >gi|302037758|ref|YP_003798080.1| ribonuclease D [Candidatus Nitrospira defluvii] gi|300605822|emb|CBK42155.1| Ribonuclease D [Candidatus Nitrospira defluvii] Length = 401 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 4/158 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--NLVGMLVDEKREKIFH 80 IA+DTE +G RL ++Q++ +G +I A Q+ AP ++ D + EK+ H Sbjct: 30 IAIDTEFMGEEHFIPRLELIQVA-AEGVAAVIDFPAVQEAAPMARFWEIVCDARIEKVLH 88 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 GR D+ + + G +P F T+IA+ + Y Q + ++ + G+ + KA ++W Sbjct: 89 AGRQDLELFAHHAGRLPKPFFDTQIAAAMV-GYGAQTAYANLVQRVQGVKLDKAHTFTNW 147 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 S LS EQL YA DV L + +KL +GRS+ Sbjct: 148 SQRPLSREQLVYALDDVTFLLPVHRHLRQKLSVMGRSE 185 >gi|83858515|ref|ZP_00952037.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633] gi|83853338|gb|EAP91190.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633] Length = 384 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 16/189 (8%) Query: 15 CAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 CA R + +AVDTE + +LC++Q + D V I +A G P +L D+ Sbjct: 14 CAKLRQAEYVAVDTEFMRESTFWPQLCLIQAAGDDTEVLIDPLAEGLDLQP-FYDLLTDQ 72 Query: 74 KREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNL------KEL 126 K+FH R D+ + F+ G + +P+F ++IA+ GL D++ + L Sbjct: 73 NVIKVFHACRQDLEIFFHEGGGIIPKPLFDSQIAAMAV-------GLGDSISYDNLVRAL 125 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 + +N+ K + +DWS LSD+Q +YA +DV HL L EKL ++GR Sbjct: 126 VKVNLDKGSRFTDWSRRPLSDKQKEYALADVTHLRDLFPILREKLAKVGREAWLAEEMKT 185 Query: 187 LMDRAELDL 195 L D A ++ Sbjct: 186 LTDPATYEM 194 >gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B] gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B] Length = 550 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 3/139 (2%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 D ET GL DR+C VQL+ G+ V ++++ G L +L D+ KIFH RFD Sbjct: 380 DIETTGLNWYADRICTVQLACGN-RVAVVQLPEGH-TPQRLSQILGDQNILKIFHNARFD 437 Query: 86 IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-HGLKDNLKELLGINISKAQQSSDWSADD 144 + + Y + V + V CT RL H L++ L+ L + I K Q SDW+ Sbjct: 438 LRFMVYHWSVIPQNVACTLELVRLLNPRERAGHTLREVLERYLAVQIIKDQTCSDWTTAQ 497 Query: 145 LSDEQLQYAASDVVHLHAL 163 L+ EQ++YA +DV +L L Sbjct: 498 LTQEQIRYATNDVRYLPVL 516 >gi|192291826|ref|YP_001992431.1| ribonuclease D [Rhodopseudomonas palustris TIE-1] gi|192285575|gb|ACF01956.1| ribonuclease D [Rhodopseudomonas palustris TIE-1] Length = 392 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 5/182 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I VDTE L LC+VQ++ + + I +A G P ++ +E+ K+FH Sbjct: 23 ITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADGIDLKP-FFDLMANEQVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ P+F T++A+ + Y + ++ + G K + +DWS Sbjct: 82 RQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199 L+ EQ+ YA SDV HL + L++ GRSD + L + D+ WE Sbjct: 141 RPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEVLTSPSTYDVHPERAWE 200 Query: 200 NV 201 + Sbjct: 201 RL 202 >gi|49474343|ref|YP_032385.1| ribonuclease D [Bartonella quintana str. Toulouse] gi|49239847|emb|CAF26240.1| Ribonuclease D [Bartonella quintana str. Toulouse] Length = 404 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 2/164 (1%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A A R D + VDTE + +LC++QL+ D T+ I +A P ++VD Sbjct: 34 ALAALRPSDFVTVDTEFIRETTFWPQLCLIQLASPDVTMLIDPMAQDMDLKP-FFDLMVD 92 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 EK K+FH R DI ++++ GV P+F T+IA + + + ++ G + Sbjct: 93 EKIVKVFHAARQDIEIIYHLGGVIPYPLFDTQIAGSIC-GFGDSISYDQIVQRCTGHQLD 151 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K+ + +DWS LS++QL YA +DV +L + L ++L++ R Sbjct: 152 KSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKR 195 >gi|254522754|ref|ZP_05134809.1| ribonuclease D [Stenotrophomonas sp. SKA14] gi|219720345|gb|EED38870.1| ribonuclease D [Stenotrophomonas sp. SKA14] Length = 359 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 80/168 (47%), Gaps = 6/168 (3%) Query: 12 PAECAARY---VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 PAE A + I +DTE + +L +VQ++ G + I + G A L Sbjct: 8 PAELDAYFQQRPSRIGLDTEFIRERTFWPQLALVQMAVGRDILLIDPLIPGMTEA--LAP 65 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 L DE K+ H D+ + GV RP+F T+I + L G + + E+ G Sbjct: 66 WLADESIIKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLA-GIGGGMGYQKLVAEITG 124 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + ++K + SDW LS+ QLQYAA DV HL AL +LQ LGR Sbjct: 125 VALAKGETRSDWMRRPLSESQLQYAADDVEHLFALHDAIGARLQALGR 172 >gi|163792851|ref|ZP_02186827.1| Ribonuclease D [alpha proteobacterium BAL199] gi|159181497|gb|EDP66009.1| Ribonuclease D [alpha proteobacterium BAL199] Length = 386 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 2/169 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTE + +LC+VQL+ D V + +A G AP L ++ + K+FH Sbjct: 23 VAVDTEFMRDKTYYAKLCLVQLAGADEAVAVDTLAPGIDLAP-LYALMANPDVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + P+F T+IA+ + + + ++ L G+ + K + +DWS Sbjct: 82 RQDVEIFVHQADAVPAPLFDTQIAAMVC-GFGDAVSYDRLVRGLTGVKLDKTSRFTDWSH 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 LS Q++YA +DV+HL + KL++ GR + + L D A Sbjct: 141 RPLSSRQIEYALADVIHLRPAYEKLHRKLEKTGRLEWLSEEMAVLTDTA 189 >gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens] Length = 388 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I DTE L LC+VQ++ V + +A G P + ++ + K+FH Sbjct: 21 ITTDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDLTP-MFELMANPNVVKVFHAA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ P+F T++A+ + + + ++++ + I K+ + +DWS Sbjct: 80 RQDIEIIYHLGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVQKIKNVQIDKSSRFTDWSR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 L+++QL YA +DV HL + L +L+R GRS T N L R D+ Sbjct: 139 RPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLWLTEEMNILESRDTYDM 191 >gi|148255258|ref|YP_001239843.1| ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1] gi|146407431|gb|ABQ35937.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1] Length = 384 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 5/181 (2%) Query: 9 GDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 D+ A CA A++ I VDTE L LC+VQ++ D + I +A G + + Sbjct: 8 ADLSAACARLAQH-PVITVDTEFLRETTYYPLLCVVQMASPDEALVIDALAEGI-DLTSF 65 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 ++ +EK K+FH R DI ++++ + P+F T++A+ + Y + ++ + Sbjct: 66 FELMANEKVLKVFHAARQDIEIIWHRANIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERI 124 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 G K + +DWS LS EQ+ YA +DV HL + L++ GRSD + Sbjct: 125 TGHRPDKTHRFTDWSRRPLSKEQVHYAEADVTHLRDVFAALDADLKKRGRSDWVSEEMEI 184 Query: 187 L 187 L Sbjct: 185 L 185 >gi|126725300|ref|ZP_01741142.1| ribonuclease D [Rhodobacterales bacterium HTCC2150] gi|126704504|gb|EBA03595.1| ribonuclease D [Rhodobacterales bacterium HTCC2150] Length = 385 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 10/195 (5%) Query: 1 MTTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGD---GTVDII 54 M TI E D+ C AA++ + VDTE L +LC+VQL+ PGD V + Sbjct: 1 MRTITTTE-DLAEYCTQAAKF-PYVTVDTEFLRERTYYAKLCLVQLAMPGDDDSNAVLVD 58 Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 +A G AP L + DE K+FH R D+ + F GV P+F T++A+ + + Sbjct: 59 PLAKGLSLAP-LYDLFRDENVVKVFHAARQDLEIFFVEEGVIPSPLFDTQVAAMVC-GFG 116 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +Q G + ++++ + K+ + +DWS LSD Q YA +DV HL + ++L++ Sbjct: 117 DQVGYETLVRKIAREAVDKSSRFTDWSRRPLSDAQKTYALADVTHLRVVYEYLAKELEKS 176 Query: 175 GRSDLATSCCNFLMD 189 R+ T L + Sbjct: 177 KRTKWVTEELGVLTE 191 >gi|58584516|ref|YP_198089.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418832|gb|AAW70847.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 399 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 3/169 (1%) Query: 10 DIPAECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 DI E A+ IA DTE + + RL ++Q+S G+ + I+ A + + + Sbjct: 11 DICEELIAKKPKFIAADTEFIRNHLTYYPRLSLIQISYGEKSF-IVDALAPEVDLSFIKK 69 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++++ + K+FH R DI LF F P+F T++A+ Y + G +++ G Sbjct: 70 IMLNREITKVFHSCRQDIESLFTVFKCIPAPIFDTQVAAMFCHYYHDFIGYSKVVEQYQG 129 Query: 129 INISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + + K + ++SDW LS +QL YA SDVVHL+ L ++L+ GR Sbjct: 130 VVLDKIKAKNSDWLRRPLSKDQLDYAISDVVHLYDLHQILCDRLEESGR 178 >gi|154247067|ref|YP_001418025.1| ribonuclease D [Xanthobacter autotrophicus Py2] gi|154161152|gb|ABS68368.1| ribonuclease D [Xanthobacter autotrophicus Py2] Length = 382 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 2/169 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE L +LC+VQ++ + V I +A G AP ++ +E+ K+FH G Sbjct: 23 VTVDTEFLRETTFWPKLCVVQVASPEEAVLIDALADGLDLAP-FYRLMANERVMKVFHAG 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ + PVF T++A+ + Y + ++ + G + K+ + +DWS Sbjct: 82 RQDIEIIWHQARLIPHPVFDTQVAA-MVLGYGDSISYDQLVQRVTGHALDKSSRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 LS Q+ YA +DV HL + ++ T L+ GR++ + L A Sbjct: 141 RPLSQAQIVYAVADVTHLRDIYIKLTTDLETRGRAEWVGEEMHVLTSPA 189 >gi|89069870|ref|ZP_01157204.1| ribonuclease D [Oceanicola granulosus HTCC2516] gi|89044546|gb|EAR50665.1| ribonuclease D [Oceanicola granulosus HTCC2516] Length = 385 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 8/181 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI-- 56 M TI E D+ CA A + VDTE L LC+VQL+ PGDG D + + Sbjct: 1 MRTITTTE-DLATFCAEAAKAPYVTVDTEFLRERTYYPHLCLVQLAYPGDGKTDAVLVDP 59 Query: 57 -AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 G AP L + D K+FH R D+ + ++ V P+F T++A+ + + Sbjct: 60 LEGGLDLAP-LYALFQDHGVVKVFHAARQDLEIFWHGGQVIPEPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + ++++ N+ K+ + +DWS LS+ Q +YA +DV HL + + +L + G Sbjct: 118 QVGYETLVRKIARENLDKSSRFTDWSRRPLSEAQKRYALADVTHLRVIYEELKAELDKSG 177 Query: 176 R 176 R Sbjct: 178 R 178 >gi|126737525|ref|ZP_01753255.1| ribonuclease D [Roseobacter sp. SK209-2-6] gi|126720918|gb|EBA17622.1| ribonuclease D [Roseobacter sp. SK209-2-6] Length = 388 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 10/201 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI---AAGQKNAPNLVGM 69 E AA+Y + VDTE L +LC++QL+ GDG D + + A G P L + Sbjct: 15 EEAAQYA-YVTVDTEFLRERTYYSKLCLIQLAFAGDGEEDAVLVDPLAEGLALDP-LYDL 72 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 +E K+FH R D+ + + GV +P+F T++A+ + + Q G + ++++ Sbjct: 73 FRNEAVVKVFHAARQDLEIFWVDAGVFPKPLFDTQVAAMVC-GFGEQVGYETLVRKIAKQ 131 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ K+ + +DWS LS Q YA +DV HL + ++L++ GRS L D Sbjct: 132 SLDKSSRFTDWSRRPLSGAQKTYALADVTHLRRIYEFLAKELEKSGRSHWVAEELKVLTD 191 Query: 190 RAELDLL---GWENVDIFSHS 207 A D+ W V + S Sbjct: 192 PATYDIRPEEAWRRVKTRTSS 212 >gi|299133731|ref|ZP_07026925.1| ribonuclease D [Afipia sp. 1NLS2] gi|298591567|gb|EFI51768.1| ribonuclease D [Afipia sp. 1NLS2] Length = 382 Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 2/165 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE L LC+VQL+ D V + +A G P ++ DEK K+FH Sbjct: 23 VTVDTEFLRETTYYPLLCVVQLASSDEAVVVDALAEGIDLKP-FFDLMADEKVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ PVF T++A+ + Y + + + G + K + +DWS Sbjct: 82 RQDIEIVWHLAGIVPHPVFDTQVAA-MVLGYGDSIAYDQLVGRITGHKLDKTHRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 L+ EQ YA +DV HL + L++ R+D + + L Sbjct: 141 RPLTKEQSAYALADVTHLRDVFTALDADLKKRKRADWVSEEMDVL 185 >gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3] gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3] Length = 386 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE L LC+VQ++ V + +A G P L ++ + K+FH Sbjct: 21 ITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDLTP-LFELMANPDVVKVFHAA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ P+F T++A+ + + + ++ + + I K+ + +DWS Sbjct: 80 RQDIEIIYHLGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVQRIKNVQIDKSSRFTDWSR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 L+++QL YA +DV HL + L +L+R GRS T + L R D+ Sbjct: 139 RPLTEKQLDYALADVTHLRDVYLALKAQLEREGRSLWLTEEMDILESRETYDM 191 >gi|103487237|ref|YP_616798.1| ribonuclease D [Sphingopyxis alaskensis RB2256] gi|98977314|gb|ABF53465.1| ribonuclease D [Sphingopyxis alaskensis RB2256] Length = 395 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 6/189 (3%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIF 79 D IAVDTE + LC++Q++ + I +A G P L+ +LVD E K+F Sbjct: 24 DFIAVDTEFMRENTFWPELCLIQVADTEHAAAIDPMAQGMDLKP-LLDLLVDNEDMLKVF 82 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H G D+ ++F G P+F T+I ++ Q G + ++ LG+ + K + +D Sbjct: 83 HAGGQDVEIIFNLTGKTPHPIFDTQI-GQMALGQAEQVGYSNLVEAWLGLQLDKGARFTD 141 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---L 196 WS L Q+ YA DV HL + +KL R GR L D A + Sbjct: 142 WSRRPLDKRQIDYAIGDVTHLAKIFPMMLDKLIRTGRGHWLDEEMEKLADPANYSVDPDK 201 Query: 197 GWENVDIFS 205 W+ + I S Sbjct: 202 AWQRIKIPS 210 >gi|75675781|ref|YP_318202.1| ribonuclease D [Nitrobacter winogradskyi Nb-255] gi|74420651|gb|ABA04850.1| ribonuclease D [Nitrobacter winogradskyi Nb-255] Length = 382 Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 5/182 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I VDTE L LC++QL+ D V + +A G P ++ +E K+FH Sbjct: 23 ITVDTEFLRETTYYPLLCVIQLASPDEAVVVDALAGGIDLKP-FFALMSNESVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ PVF T++A+ + + + ++ + G K + +DWS Sbjct: 82 RQDIEIIWHQAGLIPHPVFDTQVAA-MVLGHGDSIAYDALVERITGHRPDKTHRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199 L+ EQL+YA +DV HL + L + GRSD + L D WE Sbjct: 141 RPLTAEQLEYAVADVTHLRDVFAALDADLSKRGRSDWVSEEMEVLTSPKTYDFHPERAWE 200 Query: 200 NV 201 + Sbjct: 201 RL 202 >gi|332702439|ref|ZP_08422527.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay] gi|332552588|gb|EGJ49632.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay] Length = 409 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 3/177 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R DA+ +DTE + L ++QL DG V ++ G + LV +L D + K Sbjct: 43 RGCDAVGMDTEFVRSRTYFPTLGLIQLV-ADGGVFLVD-PLGVDDLSPLVEILADPRLIK 100 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 IFH + D+ L+Y G PVF T++A+ Y Q G +K L G+ + K + Sbjct: 101 IFHSCQEDLEALYYLCGFAPGPVFDTQVAASFL-GYGFQPGYGSLVKALFGVELDKDETR 159 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 S+W LS+ QL YAA DV +L A+ + L GR A C L A + Sbjct: 160 SNWIKRPLSESQLIYAAQDVRYLPAMYSILGQALTEQGRLSWAREECAALEGEARFE 216 >gi|167646508|ref|YP_001684171.1| ribonuclease D [Caulobacter sp. K31] gi|167348938|gb|ABZ71673.1| ribonuclease D [Caulobacter sp. K31] Length = 389 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 3/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVDTE + +LC++Q++ D I +A G P L+ +L D K+FH Sbjct: 23 IAVDTEFMRETTYWPKLCLIQVASPDIEACIDPLAEGMDLEP-LLEILRDPGVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + F P+F T++A + + Q ++++L I + K+ + +DW+ Sbjct: 82 RQDVEI-FNNLNAMPTPLFDTQVAG-MAAGFGEQIAYDALVRQMLKIELDKSSRFTDWAR 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD QL YA +DV HL L E+L++ GR L D A D+ Sbjct: 140 RPLSDAQLTYAVADVTHLATLFPILRERLEKAGRLAWVEEEMKALNDPAAYDV 192 >gi|170746940|ref|YP_001753200.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831] gi|170653462|gb|ACB22517.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831] Length = 395 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 1/154 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC++Q++ DGT ++ A + + ++ DE+ K+FH Sbjct: 23 VTVDTEFMRETTYYPKLCLIQMAAPDGTAVLVDPLAPGIDLDPFIALMADERTVKVFHSA 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ G+ P F T++A+ + Y + + + ++ I K+ + +DWS Sbjct: 83 RQDLEIIWLIGGILPHPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKAKIDKSSRFTDWSR 141 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS+ QL YA SDV HL + +L R R Sbjct: 142 RPLSEAQLTYALSDVTHLVKIYEVLVAELLRTDR 175 >gi|326388937|ref|ZP_08210519.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370] gi|326206537|gb|EGD57372.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370] Length = 445 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 13 AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A+ AR A + VDTE + LC+VQ++ I +A G +P L+ +L Sbjct: 14 ADICARLAKAEFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPMAPGIDLSP-LLDLL 72 Query: 71 VD-EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 VD E K+FH G D+ +++ G P+F T+IA + + + Q G + ++ LG Sbjct: 73 VDNEDVLKVFHAGGQDVEIIYNLTGRTPHPIFDTQIAM-MAVSQSEQIGYSNLVESWLGF 131 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +I K + +DWS L++ Q++YA DV HL + + ++L + GR + Sbjct: 132 SIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPRILKRLIKTGRGE 180 >gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27] gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27] Length = 388 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 6/162 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV-DEKREKI 78 V AIA+DTE DR+ ++QLS D I + G P +G+L+ D + E + Sbjct: 25 VRAIALDTEGASFHRFVDRIYLLQLSTADHEAVIDPLPIG---TPTRLGVLLEDPQVEVV 81 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H +D+ +L +G RV +F T++A++L GL L++ GI + K Q + Sbjct: 82 LHDADYDLRLLRQDYGWRVTHLFDTRVAAQLL--GIRAFGLAALLEQFFGIKLDKKHQRA 139 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DWS L+ + L YAA D HL LR + ++L + GR A Sbjct: 140 DWSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKGRWSWA 181 >gi|251792786|ref|YP_003007512.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700] gi|247534179|gb|ACS97425.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700] Length = 385 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 3/169 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+A+DTE + +L ++QL GD V +I Q +P + +L DE+ K+ H Sbjct: 35 AVALDTEFVRTRTFYPKLGLIQLYAGD-EVALIDPTTIQDFSP-FIALLADERVTKVLHA 92 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ V + F +P+ T++ + + N G +K I I K +DW Sbjct: 93 SGEDLEVFQHYFQQLPQPMCDTQVVANFL-GFANSPGFATLVKHYFQIEIDKGASCTDWL 151 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 A LSD QLQYAA+DV +L L Q +L + + C FL+++ Sbjct: 152 ARPLSDTQLQYAAADVWYLLPLYQQMKAQLAQTEWQSAVENECEFLLNK 200 >gi|77917938|ref|YP_355753.1| RNase D [Pelobacter carbinolicus DSM 2380] gi|77544021|gb|ABA87583.1| RNase D [Pelobacter carbinolicus DSM 2380] Length = 375 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 4/154 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVD E L ++++C++Q+S TV + +A ++ L +L D KIFH Sbjct: 26 IAVDLEADSLHSYQEKVCLLQISTSTRTVLVDPLAV--EDLAALAPVLADPTIRKIFHAA 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +DI LF F + V+ +F T IA ++ + GL D L + L + + K Q +DWS Sbjct: 84 DYDIRCLFRDFRIEVQGLFDTMIACQML--GEKRVGLADVLAKYLDVELDKRYQRADWSK 141 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L + + YA D HLH L +L+ +GR Sbjct: 142 RPLEEGMILYAMEDTCHLHRLTEILEGRLRDMGR 175 >gi|85717198|ref|ZP_01048155.1| ribonuclease D [Nitrobacter sp. Nb-311A] gi|85695978|gb|EAQ33879.1| ribonuclease D [Nitrobacter sp. Nb-311A] Length = 420 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 7/194 (3%) Query: 13 AECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A AR+ I VDTE L LC++Q++ D + I +A G + + ++ Sbjct: 49 ASVCARFAKHPVITVDTEFLRETTYYPLLCVIQMASPDEAIAIDALAEGI-DLNSFFTLM 107 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 +E K+FH R DI ++++ G+ PVF T++A+ + Y + ++ + G Sbjct: 108 SNEGVLKVFHAARQDIEIIWHQAGIIPHPVFDTQVAA-MVLGYGDSIAYDALVERVTGHR 166 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K + +DWS L+ EQL+YA +DV HL + L++ GRSD + L Sbjct: 167 PDKTHRFTDWSRRPLTAEQLEYAVADVTHLRDVFAALDVDLRKRGRSDWVSEEMEILTSP 226 Query: 191 AELDL---LGWENV 201 D WE + Sbjct: 227 KTYDFHPERAWERL 240 >gi|83951561|ref|ZP_00960293.1| ribonuclease D [Roseovarius nubinhibens ISM] gi|83836567|gb|EAP75864.1| ribonuclease D [Roseovarius nubinhibens ISM] Length = 385 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGD---GTVDIIRIAAGQKNAPNLVGMLVD 72 AR + VDTE L +LC+VQL+ PG+ G V + +A G P L + D Sbjct: 17 ARKHPYVTVDTEFLRERTYYSKLCLVQLAMPGEDDAGAVLVDPLAEGLSLEP-LYELFRD 75 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E K+FH R D+ + + G+ +P+F T++A+ + + Q G + ++ + + Sbjct: 76 ENVVKVFHAARQDLEIFYVDAGLIPQPLFDTQVAAMVC-GFGEQVGYETLVRRIAKEQLD 134 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K+ + +DWS LS+ Q +YA DV HL + +L++ GR LMD A Sbjct: 135 KSSRFTDWSRRPLSEAQKKYALGDVTHLRRIYEYLAAELEKSGRDAWVKEELGTLMDPA 193 >gi|304321318|ref|YP_003854961.1| ribonuclease D [Parvularcula bermudensis HTCC2503] gi|303300220|gb|ADM09819.1| ribonuclease D [Parvularcula bermudensis HTCC2503] Length = 383 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + +LC++Q++ + I +AA AP L +L D K+FH Sbjct: 21 DFVTVDTEFMRERTYYPKLCLIQVASTEEAAIIDPLAAALDLAPFL-ELLADPSVLKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + G P+F T+IA+ + + +Q G + ++E+ G + K + +DW Sbjct: 80 AARQDLEIFYKLMGKVPAPLFDTQIAA-MACGHGDQVGYEALIREVTGAQVDKGSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + LSD+QL YA DV HL +L+ GR Sbjct: 139 AKRPLSDKQLTYALGDVTHLVDAYQALITELEEKGR 174 >gi|284046840|ref|YP_003397180.1| ribonuclease D [Conexibacter woesei DSM 14684] gi|283951061|gb|ADB53805.1| Ribonuclease D [Conexibacter woesei DSM 14684] Length = 396 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 7/180 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDG-TVDIIRIAA----GQKNAPNLVGMLV 71 AR + +DTE + R LC+VQ++ D + +RIA + + L +L Sbjct: 22 ARAAGRLGIDTEFMSEGRYRALLCLVQVAVDDADAPNGVRIALFDPFDKLDFAPLAAVLA 81 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D + E + H R D+A++ + VR VF T++A+ Y Q G + L LG + Sbjct: 82 DPEIEIVLHAARQDVAIMRRAWRTDVREVFDTQVAAGFA-GYGAQTGYGNLLGAALGQRV 140 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K + W A L++EQL YAA DV+HL L +KL GR A C MD A Sbjct: 141 GKTASYTRWDARPLTEEQLSYAAEDVLHLLQLSDALHDKLSAHGRLQWAQEECRR-MDEA 199 >gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H] gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H] Length = 396 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + LC+VQL+ + V I +A G AP L +L K+FH Sbjct: 33 VTIDTEFVRERTYWPELCLVQLAGTEDVVLIDTLAPGIDLAP-LGALLAKPDCTKVFHAA 91 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F VF T++A+ + + +Q G + + G +I KA + SDWSA Sbjct: 92 RQDLEIFLHIFDRLPASVFDTQVAA-MVAGFGDQVGYDSLVGAITGRSIDKAHRFSDWSA 150 Query: 143 DDLSDEQLQYAASDVVHLH----ALRLQFTEK 170 LS Q+ YAA+DV HL ALR Q E+ Sbjct: 151 RPLSKAQIAYAATDVTHLRTVYDALRKQLAEQ 182 >gi|114767452|ref|ZP_01446239.1| ribonuclease D [Pelagibaca bermudensis HTCC2601] gi|114540462|gb|EAU43543.1| ribonuclease D [Roseovarius sp. HTCC2601] Length = 385 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 6/193 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI-- 56 M TI E D+ A C+ A + VDTE L +LC++QL+ PG G + + + Sbjct: 1 MKTITSTE-DLAAFCSEAATAPYVTVDTEFLRERTYYSKLCLIQLAYPGQGDENAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 AG+ + L+ + + K+FH R D+ + F GV P+F T++A+ + + Q Sbjct: 60 LAGELSLEPLLELFRNTNVVKVFHAARQDLEIFFIDHGVIPDPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +K + + K+ + +DWS L+D Q +YA +DV HL + +L+R GR Sbjct: 119 VGYETLVKRIAKQGLDKSSRFTDWSRRPLTDAQKKYALADVTHLRVIYEYLAAELERTGR 178 Query: 177 SDLATSCCNFLMD 189 + L D Sbjct: 179 ARWVAEELGVLTD 191 >gi|86138715|ref|ZP_01057288.1| ribonuclease D [Roseobacter sp. MED193] gi|85824775|gb|EAQ44977.1| ribonuclease D [Roseobacter sp. MED193] Length = 385 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 9/192 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI---AAGQKNAPNLVGMLVDEKREKI 78 + VDTE L +LC++Q++ GDG D + + + G P L + DE K+ Sbjct: 23 VTVDTEFLRERTYYSKLCLIQIAFSGDGENDAVLVDPLSEGLSLEP-LYALFRDESVVKV 81 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH R D+ + + V +P+F T++A+ + + +Q G + +++++ + K+ + + Sbjct: 82 FHAARQDLEIFWVDANVFPKPLFDTQVAAMVC-GFGDQVGYETLVRKIVKEGVDKSSRFT 140 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL-- 196 DWS LS+ Q YA +DV HL + L+R GRS L D A ++ Sbjct: 141 DWSRRPLSEAQQAYALADVTHLRRVYEYLAADLERSGRSHWVAEELQVLTDPATYNIQPQ 200 Query: 197 -GWENVDIFSHS 207 W V + S Sbjct: 201 DAWRRVKTRTSS 212 >gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix] gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix] Length = 392 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 8/146 (5%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 D IA+DTE L +LC+VQ + D +D +R+ Q L + D K Sbjct: 23 TDWIALDTEFLREKTYYPQLCLVQAATLDQLACIDPLRLDIQQ-----LAPLFRDPGITK 77 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FH D+ +L+ G PVF T+IA+ + Y Q G + +K +L ++ K+Q Sbjct: 78 VFHAASQDMELLYRELGFVPSPVFDTQIAASML-GYGEQVGYANLVKTVLERDLDKSQTR 136 Query: 138 SDWSADDLSDEQLQYAASDVVHLHAL 163 +DWS LS EQ++YAA DV HL L Sbjct: 137 TDWSRRPLSAEQIRYAADDVRHLATL 162 >gi|114569802|ref|YP_756482.1| ribonuclease D [Maricaulis maris MCS10] gi|114340264|gb|ABI65544.1| ribonuclease D [Maricaulis maris MCS10] Length = 386 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 16/164 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTE + +LC++Q + G+ V I +A G P ++ DE+ K+FH Sbjct: 23 VAVDTEFMRETVYWPQLCLIQAAAGETEVIIDPLAEGIDLEP-FWELMADERIIKVFHAA 81 Query: 83 RFDIAVLFYTFG--VRVRPVFCTKIASRLTRTYTNQHGLKDNL------KELLGINISKA 134 R D+ + F+ G + P+F +++A+ GL D++ + LL I K Sbjct: 82 RQDLEIFFHQGGDALIPHPMFDSQVAAMAL-------GLGDSIAYDALVRTLLNRPIDKG 134 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + +DWS LSD Q +YA +DV HL L E+L++ GR++ Sbjct: 135 PRFTDWSRRPLSDAQTKYAIADVTHLRDLYPMMVERLEKTGRTE 178 >gi|300024345|ref|YP_003756956.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888] gi|299526166|gb|ADJ24635.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888] Length = 384 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 2/157 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D +AVDTE L LC++QL+ + + +A G AP ++ D K+FH Sbjct: 21 DYVAVDTEFLREQTFWPLLCLIQLAGPEAEAIVDPLAPGLDLAP-FYHLMADTSTVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++F GV PVF +++A+ + + + + +K+ G ++ K+ + +DW Sbjct: 80 AARQDIEIVFLKSGVVPTPVFDSQVAAMVC-GFGDSISYVNLVKKTTGADLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 S LS +QL YA +DV +L + + + L + GR+ Sbjct: 139 SRRPLSPKQLDYALADVTYLRDVYQRLRQTLDKTGRT 175 >gi|254486025|ref|ZP_05099230.1| ribonuclease D [Roseobacter sp. GAI101] gi|214042894|gb|EEB83532.1| ribonuclease D [Roseobacter sp. GAI101] Length = 385 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS-PG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 D + +DTE L +LC++Q++ PG D ++ AG + L + D K Sbjct: 21 DYVTIDTEFLRERTYYSKLCLIQMAMPGTDDSGAVLVDPLAGDMSLEPLYALFRDTSVVK 80 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FH R D+ + F GV P+F T++A+ + + Q G + ++++ + K + Sbjct: 81 VFHAARQDLEIFFVDAGVFPEPLFDTQVAAMVC-GFGEQVGYETLVRKIAHQAVDKTSRF 139 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DWS L+D Q +YA +DV HL + KL+ GR+ Sbjct: 140 TDWSRRPLTDAQAKYALADVTHLRQVYEFLARKLEETGRA 179 >gi|46202610|ref|ZP_00208583.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1] Length = 398 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 2/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC+VQ++ D I +A G P L ++ D K+FH Sbjct: 23 VTVDTEFMREKTYWPQLCLVQVAGPDEARAIDPLAPGMDLTP-LFELMADTNVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + P+F T+IA+ + + + G + +L I K+ + +DWS Sbjct: 82 RQDVEIFLHLADAIPTPIFDTQIAA-MVCGFGDSVGYETLASQLAKARIDKSMRFTDWSI 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS++Q+QYA +DV HL + KL+R GR Sbjct: 141 RPLSEKQIQYALADVTHLRVAYEKLVRKLERNGR 174 >gi|319404161|emb|CBI77754.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498] Length = 383 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 86/163 (52%), Gaps = 2/163 (1%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 A R + + VDTE + +LC++Q++ D T+ +I A N +++D+K Sbjct: 15 AALRKSNFVTVDTEFIRKTTFWPQLCLIQVASPDITI-LIDPMAQDINLQPFFDLMIDKK 73 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+FH R DI ++++ G+ P+F T++A + + + ++ G ++ K+ Sbjct: 74 VVKVFHAARQDIEIIYHLGGIIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLDKS 132 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + +DWS LS++QL YA SDV +L + L ++L+ R+ Sbjct: 133 SRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRT 175 >gi|99081315|ref|YP_613469.1| ribonuclease D [Ruegeria sp. TM1040] gi|99037595|gb|ABF64207.1| ribonuclease D [Ruegeria sp. TM1040] Length = 385 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 8/198 (4%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI--AAGQKNAPNLVGMLVD 72 AA+Y + VDTE L +LC++Q++ GDG D + + +G + L + + Sbjct: 17 AAKY-PYVTVDTEFLRERTYYSKLCLIQIAYRGDGETDAVLVDPLSGDLSLEPLYELFRN 75 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E K+FH R D+ + + GV +P+F T++A+ + + Q G + ++++ + Sbjct: 76 EDVVKVFHAARQDLEIFWVDAGVFPKPLFDTQVAAMVC-GFGEQVGYETLVRKICKQGLD 134 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 K + +DWS LSD Q YA +DV HL + ++L + RS L D A Sbjct: 135 KTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLRKELDKTKRSHWVAEELQVLTDPAT 194 Query: 193 LDLL---GWENVDIFSHS 207 ++ W V ++S Sbjct: 195 YNIQPREAWRRVKTRTNS 212 >gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2] gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2] Length = 377 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 87/182 (47%), Gaps = 13/182 (7%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQ 60 I HE + A C AAR +A+DTE L RLC+VQ++ + VD + I Sbjct: 3 ISTHE-QLAALCDAARSFSIVAIDTEFLRERTYHPRLCLVQVATPEVSALVDPLEI---- 57 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--TRTYTNQHG 118 ++ L ++ DE KIFH D+ VL V P+F T++A+ R + G Sbjct: 58 EDLSPLAALMADEGTRKIFHACSQDMEVLLNALDVLPNPIFDTQVAAAFLGERVQMSYDG 117 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L +K G+++ K +DWS L+ EQ+ YA DV +L E+L++ GR Sbjct: 118 L---VKAFCGVSLPKTASLTDWSHRPLTAEQMDYAEDDVRYLICAYEVMAERLEQRGRMS 174 Query: 179 LA 180 A Sbjct: 175 WA 176 >gi|209885458|ref|YP_002289314.1| ribonuclease D [Oligotropha carboxidovorans OM5] gi|209873654|gb|ACI93450.1| ribonuclease D [Oligotropha carboxidovorans OM5] Length = 386 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 2/169 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE L LC+VQL+ D V + +A G P ++ +EK K+FH Sbjct: 23 VTVDTEFLRETTYYPLLCVVQLASTDEAVVVDALAEGIDLKP-FFDLMANEKVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ + PVF T++A+ + Y + + + G + K + +DWS Sbjct: 82 RQDIEIVWHLANIVPHPVFDTQVAA-MVLGYGDSIAYDQLVGRITGHKLDKTHRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 L+ EQ YA +DV HL + L L++ R+D + L A Sbjct: 141 RPLTQEQTTYALADVTHLRDVFLVLDADLKKRNRADWVSEEMQILTSPA 189 >gi|294084191|ref|YP_003550949.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322] gi|292663764|gb|ADE38865.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322] Length = 409 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 4/157 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +A+DTE + +LC++Q+ GDGT + I A N L ++ DE K+FH Sbjct: 50 LAIDTEFMRERTYYPQLCLIQV--GDGTKAVAIDPLAKNLNLEPLWSLMRDESIIKVFHA 107 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 G D+ + G PV+ T+IA L + +Q G +K +LG N+ K + +DWS Sbjct: 108 GNQDMEIFLNEMGGLPSPVYDTQIAG-LVCGHGDQIGYDSLVKSILGKNVDKTSRFTDWS 166 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L+D Q+ YA DV++L + +K+ R++ Sbjct: 167 KRPLTDRQISYALDDVIYLAQIYPIMLDKIASENRTN 203 >gi|56697032|ref|YP_167394.1| ribonuclease D [Ruegeria pomeroyi DSS-3] gi|56678769|gb|AAV95435.1| ribonuclease D [Ruegeria pomeroyi DSS-3] Length = 385 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 10/206 (4%) Query: 10 DIPAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAP 64 ++ A C A A + VDTE L +LC++QL+ PG D V + +A G + P Sbjct: 9 ELAAFCKAAASHAYVTVDTEFLRERTYYSKLCLIQLAYPGEDADSAVLVDPLAEGLELEP 68 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + D K+FH R D+ + + GV P+F T++A+ + + Q G + ++ Sbjct: 69 -LYTLFRDTSVVKVFHAARQDLEIFWVDAGVFPEPLFDTQVAAMVC-GFGEQVGYETLVR 126 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ++ + K + +DWS LSD Q YA +DV HL + L + GRS Sbjct: 127 KICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAADLAKTGRSHWVAEEL 186 Query: 185 NFLMDRAELDLL---GWENVDIFSHS 207 L D A D+ W + ++S Sbjct: 187 RTLTDPATYDIRPEEAWRRIKTRTNS 212 >gi|259416057|ref|ZP_05739977.1| ribonuclease D [Silicibacter sp. TrichCH4B] gi|259347496|gb|EEW59273.1| ribonuclease D [Silicibacter sp. TrichCH4B] Length = 385 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 8/200 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI--AAGQKNAPNLVGML 70 E AA Y + VDTE L +LC++Q++ GDG D + + + + L + Sbjct: 15 EEAANY-PYVTVDTEFLRERTYYSKLCLIQIAFRGDGKTDAVLVDPLSSDLSLEPLYELF 73 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 +E K+FH R D+ + + V +P+F T++A+ + + Q G + ++++ Sbjct: 74 RNEDVVKVFHAARQDLEIFWVDASVFPKPLFDTQVAAMVC-GFGEQVGYETLVRKICKQG 132 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + K + +DWS LSD Q YA +DV HL + ++L + GRS L D Sbjct: 133 LDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLRKELDKTGRSHWVAEELQVLTDP 192 Query: 191 AELDLL---GWENVDIFSHS 207 A D+ W V ++S Sbjct: 193 ATYDIQPREAWRRVKTRTNS 212 >gi|319405613|emb|CBI79236.1| Ribonuclease D [Bartonella sp. AR 15-3] Length = 383 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 2/165 (1%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A A R + + VDTE + +LC++Q++ D T+ +I A N +++D Sbjct: 13 AIAALRKSNFVTVDTEFIRETTFWPQLCLIQVASSDVTI-LIDPMAQDINLQPFFDLMID 71 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +K K+FH R DI ++++ GV P+F T++A + + + ++ G ++ Sbjct: 72 KKIVKVFHAARQDIEIIYHLGGVIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLD 130 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 K+ + +DWS LS++QL YA +DV +L + L ++L+ R+ Sbjct: 131 KSSRFTDWSCRPLSEKQLLYALADVTYLREVYLVLKKQLEEKKRT 175 >gi|110679520|ref|YP_682527.1| ribonuclease D [Roseobacter denitrificans OCh 114] gi|109455636|gb|ABG31841.1| ribonuclease D [Roseobacter denitrificans OCh 114] Length = 387 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS-PG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 D + VDTE L +LC++QL+ PG D T I+ A + L + D K Sbjct: 21 DYVTVDTEFLRERTYYSKLCLIQLAMPGEDDSTGCIVDPLAPGLSLEPLYALFRDTSVVK 80 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FH R D+ + + V P+F T++A+ + + Q G + ++ + + K + Sbjct: 81 VFHAARQDLEIFYVDAEVFPEPLFDTQVAAMVC-GFGEQVGYETLVRRIAKKPLDKTSRF 139 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DWS L+D Q++YA +DV HL + EKL+ GRS Sbjct: 140 TDWSRRPLTDAQMKYALADVTHLREVYEFLAEKLEETGRS 179 >gi|297184397|gb|ADI20513.1| ribonuclease d [uncultured alpha proteobacterium EB080_L58F04] Length = 387 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 6/165 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG---TVDIIRIAAGQKNAPNLVGMLV 71 AA+ D + +DTE L +LC++QL+ PG G V + +A G K L + Sbjct: 16 AAKAFDYVTIDTEFLRERTYYSKLCLIQLAVPGKGDDHAVLVDPLAHGLK-LDALYALFE 74 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 DE K+FH R D+ + GV +P+F T++A+ + + Q G + ++++ +I Sbjct: 75 DETVVKVFHAARQDLEIFCVDAGVLPKPLFDTQVAA-MVCGFGEQVGYETLVRKITKNSI 133 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K+ + +DWS L++ Q YA +DV HL + K+++ GR Sbjct: 134 DKSSRFTDWSRRPLTEAQKSYALADVTHLRQVYEFLRAKIEKTGR 178 >gi|118340523|gb|ABK80573.1| putative ribonuclease D [uncultured marine Nitrospinaceae bacterium] Length = 386 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 14/185 (7%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + R ++Q+ G+ I IA + L+ +L D + K+FH Sbjct: 20 DVLVVDTEFVRERTYFHRTGLIQVGGGEHFAAIDPIAL--PDMTPLLELLKDPTKVKVFH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ +L G + P+F T+IA+ L + Q + + LG I K++ +DW Sbjct: 78 AARQDLEILVRFCGQVIPPIFDTQIAAALV-GWGTQISFAKIVYKALGKKIHKSETYTDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200 LSD Q++YA DV +L + + E+L+++GR D N WE+ Sbjct: 137 CRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKKMGRLDWVQGEVN-----------AWED 185 Query: 201 VDIFS 205 F+ Sbjct: 186 PKTFA 190 >gi|92117640|ref|YP_577369.1| ribonuclease D [Nitrobacter hamburgensis X14] gi|91800534|gb|ABE62909.1| ribonuclease D [Nitrobacter hamburgensis X14] Length = 396 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 5/182 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE L LC+VQ++ D V + +A G P ++ +E+ K+FH Sbjct: 37 VTVDTEFLRETTYYPLLCVVQMASPDEAVVVDALAEGIDLKP-FFDLMSNERVLKVFHAA 95 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++++ G+ P+F T++A+ + Y + ++ + G K + +DWS Sbjct: 96 RQDIEIVWHQAGIIPHPIFDTQVAA-MVLGYGDSIAYDALVERVNGHRPDKTHRFTDWSR 154 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199 L+ +QL+YA +DV HL + L++ GR D + L D WE Sbjct: 155 RPLTKDQLEYAVADVTHLRDVFAALDADLKKRGRGDWVSEEMEVLTSPKTYDFHPERAWE 214 Query: 200 NV 201 + Sbjct: 215 RL 216 >gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279] gi|210159428|gb|EEA90399.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279] Length = 377 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A C AR AIA+DTE L +LC+VQ++ D V I + + L Sbjct: 8 DLSAFCGRARCHVAIAIDTEFLRERTYHAKLCLVQVATPDECVVIDPLTIDDLSP--LAE 65 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--TRTYTNQHGLKDNLKEL 126 ++ D K+FH D+ VL +T GV P+F T++A+ R + H L + Sbjct: 66 LMADVDTLKVFHACSQDMEVLVHTLGVCPAPIFDTQVAAGFLGERAQCSYHNL---VHSF 122 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G+++ K + +DWS LS +Q++YA DV +L KL LGR+ Sbjct: 123 CGVSLPKTESLTDWSRRPLSPQQIEYAVDDVRYLIDAYRVIESKLHSLGRT 173 >gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 597 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 4/177 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTET GL P +R+ ++Q++ V I+ +AA + + + L++ K+F G Sbjct: 37 IGIDTETTGLDPLTERIRLIQIAAPQHPVIIVDLAALADSELSPLKALLNSSALKVFQNG 96 Query: 83 RFDIAVLFYTFGVRVR-PVFCTKIASRLTRT-YTNQHGLKDNLKELLGINISKAQQSSDW 140 +FD VL G+R P F +AS++ R+ H L+ E LGI + K+ QSS++ Sbjct: 97 KFDWQVLEMA-GLRPSGPFFDVMLASQVLRSGLKKDHDLQSLTFEFLGIKLDKSLQSSNF 155 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 A LS QL+YAA D L LR + KL+ G + A + A+++L G Sbjct: 156 -AGKLSASQLEYAALDAAVLLKLRARLHSKLRSAGLLETAKIEFAAMPAVAQMELNG 211 >gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684] gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684] Length = 374 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 4/141 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E + ++++C++Q + D TV + +AAG + L +L D KIFH Sbjct: 26 FAVDLEADSMHSYQEKVCLLQFTYHDTTVLLDPLAAG--DLAPLKPVLADSSIRKIFHAA 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +DI L F + +R +F T IAS+ + GL D L + + + K Q +DWS Sbjct: 84 DYDIRCLARDFDIEIRGLFDTMIASQFL--GEEKVGLADVLGKYFDVTLDKRFQRADWSK 141 Query: 143 DDLSDEQLQYAASDVVHLHAL 163 LS E YAA D HL L Sbjct: 142 RPLSPEMCHYAAEDTRHLEKL 162 >gi|85702967|ref|ZP_01034071.1| ribonuclease D [Roseovarius sp. 217] gi|85671895|gb|EAQ26752.1| ribonuclease D [Roseovarius sp. 217] Length = 386 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 7/196 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG---TVDIIR 55 M TI E D+ CA AR + VDTE L +LC++QL+ PG G V + Sbjct: 1 MKTITTTE-DLAEFCAMARTHSYVTVDTEFLRERTYYSKLCLLQLAVPGKGDDSAVLVDP 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 I + L + D K+FH R D+ + + GV P+F T++A+ + + Sbjct: 60 IEGEDMSMEPLYELFRDTSVVKVFHAARQDLEIFYVDAGVIPDPMFDTQVAAMVC-GFGE 118 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + +K + + K+ + +DWS L+D Q YA +DV HL + +KL G Sbjct: 119 QVGYETLVKRIAKQTVDKSSRFTDWSRRPLTDAQKTYALADVTHLRVVYEFLAKKLASSG 178 Query: 176 RSDLATSCCNFLMDRA 191 R + L D A Sbjct: 179 RDKWVAEELSVLTDPA 194 >gi|84501108|ref|ZP_00999343.1| ribonuclease D [Oceanicola batsensis HTCC2597] gi|84391175|gb|EAQ03593.1| ribonuclease D [Oceanicola batsensis HTCC2597] Length = 385 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 6/180 (3%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG--DGTVDIIRI 56 M TI E D+ A C A D + VDTE L +LC++Q++ PG D +I Sbjct: 1 MRTITTTE-DLAAFCNEAASCDYVTVDTEFLRERTYYSQLCLIQMAMPGEDDENAVLIDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 +G + L + ++ K+FH R D+ + + GV +P+F T+IA+ + + Q Sbjct: 60 LSGNLDLAPLYELFRNQAVVKVFHAARQDLEIFYVDAGVIPQPLFDTQIAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +K + + K+ + +DWS L++ Q +YA +DV HL + +KL+R R Sbjct: 119 VGYETLVKRIAKQQLDKSSRFTDWSRRPLTEAQKKYALADVTHLRKIYEYLADKLRRQKR 178 >gi|319407179|emb|CBI80818.1| Ribonuclease D [Bartonella sp. 1-1C] Length = 383 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 92/190 (48%), Gaps = 5/190 (2%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 A R + + VDTE + +LC++Q++ D T+ +I N +++D+K Sbjct: 15 AALRKSNFVTVDTEFIRETTFWPQLCLIQVASQDITI-LIDPMVQDINLQPFFDLMIDKK 73 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+FH R DI ++++ G+ P+F T++A + + + ++ G ++ K+ Sbjct: 74 VVKVFHAARQDIEIIYHLGGIIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLDKS 132 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 + +DWS LS++QL YA SDV +L + L ++L+ R+ L+ D Sbjct: 133 SRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRTHWMHDEMTLLLTPTTYD 192 Query: 195 LL---GWENV 201 + W+ V Sbjct: 193 IPENEAWKKV 202 >gi|222085490|ref|YP_002544020.1| ribonuclease D [Agrobacterium radiobacter K84] gi|221722938|gb|ACM26094.1| ribonuclease D [Agrobacterium radiobacter K84] Length = 381 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE L LC++Q++ V + +A G P ++ + K+FH Sbjct: 21 ITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGLDLKP-FFELMANTAVMKVFHAA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++F + P+F T++A+ + + + + + I I K+ + +DWS Sbjct: 80 RQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNIQIDKSSRFTDWSR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LS++QL YA +DV HL + L E+L+R GR+ L R DL Sbjct: 139 RPLSEKQLDYALADVTHLRDVYLSLKEQLEREGRASWLLEEMAILEARETYDL 191 >gi|209964842|ref|YP_002297757.1| ribonuclease D, putative [Rhodospirillum centenum SW] gi|209958308|gb|ACI98944.1| ribonuclease D, putative [Rhodospirillum centenum SW] Length = 385 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 2/155 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC+VQ++ D I +A G P L +L D K+FH Sbjct: 23 VTVDTEFMREKTYWPQLCLVQVAGPDEAAAIDPLAEGMDLTP-LFELLHDPGVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + G P+F T+IA+ + + + G + + +L I K+ + +DWS Sbjct: 82 RQDVEIFVHLTGAVPAPLFDTQIAA-MVCGFGDSVGYETLITKLTSARIDKSSRFTDWSQ 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L++ QL YA SDV HL + +L + GR Sbjct: 141 RPLTERQLSYALSDVTHLRPAYEKLRRRLAKTGRE 175 >gi|110633474|ref|YP_673682.1| ribonuclease D [Mesorhizobium sp. BNC1] gi|110284458|gb|ABG62517.1| ribonuclease D [Chelativorans sp. BNC1] Length = 392 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 14/180 (7%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ T + +A G AP ++ +E+ K+FH Sbjct: 21 DFVTVDTEFIRETTFWPELCLIQMAAPGVTALVDPLADGMDLAP-FFRLMGNEQVVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK------ELLGINISKA 134 R DI +++ G+ P+F T++A+ + G D++ + G +I K Sbjct: 80 AARQDIEIIYNRGGLIPHPIFDTQVAAMVC-------GFGDSISYDQLVLRITGEHIDKT 132 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 + +DW LS++QL+YA +DV HL + T +LQR GR + L R D Sbjct: 133 SRFTDWRHRPLSEKQLRYALADVTHLIPVYAHLTTELQRGGREGWLKEEMDVLTARETYD 192 >gi|49475730|ref|YP_033771.1| ribonuclease D [Bartonella henselae str. Houston-1] gi|49238537|emb|CAF27773.1| Ribonuclease D [Bartonella henselae str. Houston-1] Length = 406 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 2/160 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R D + +DTE + +LC++QL+ D TV I I+ P ++V++K K Sbjct: 41 RNSDFVTIDTEFIRETTFWPQLCLIQLASPDTTVLIDPISQDIDLKP-FFDLMVNKKIVK 99 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FH R DI +++ GV P+F T+IA + + + ++ G + K+ + Sbjct: 100 VFHAARQDIETIYHLGGVIPSPLFDTQIAGSIC-GFGDSISYDQIVQRCTGYQLDKSSRF 158 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DWS LS++QL YA +DV +L + L ++L++ R+ Sbjct: 159 TDWSFRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRT 198 >gi|46204778|ref|ZP_00049503.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1] Length = 214 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 1/154 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC++Q++ DG ++ A + + ++ DE K+FH Sbjct: 23 VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKGLDLKPFLDLMADESTVKVFHSA 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ G+ P F T++A+ + Y + + + ++ I K+ + +DWS Sbjct: 83 RQDLEIIWLLGGLLPHPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LSD QL YA SDV HL + +L R R Sbjct: 142 RPLSDAQLAYALSDVTHLVTIYQVLAAELVRTDR 175 >gi|332185190|ref|ZP_08386939.1| ribonuclease D [Sphingomonas sp. S17] gi|332014914|gb|EGI56970.1| ribonuclease D [Sphingomonas sp. S17] Length = 392 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 1/158 (0%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 D I VDTE + LC++Q++ I A G P L ++ +++ K+F Sbjct: 23 ADFITVDTEFMRESTYWPELCLIQIADTQEAAAIDPKAPGLDMTPLLDLLVNNDEVLKVF 82 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H G DI +++ G P+F T+IA+ + Q G + + LGI + K + +D Sbjct: 83 HAGGQDIEIIYNLTGKTPHPLFDTQIAA-MALGQGEQIGYSNLVDSWLGIQVDKGARFTD 141 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 WS L Q+ YA DV HL + + E+L++ GR Sbjct: 142 WSRRPLDQRQVDYAIGDVTHLSDIFPRMLERLRKTGRG 179 >gi|149186862|ref|ZP_01865172.1| ribonuclease D [Erythrobacter sp. SD-21] gi|148829529|gb|EDL47970.1| ribonuclease D [Erythrobacter sp. SD-21] Length = 411 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIF 79 D + VDTE + LC+VQ++ + I +A G P L +L D E+ K+F Sbjct: 25 DFVTVDTEFMRENTYWPELCLVQIANEEEAAAIDPLADGIDLQP-LWDLLCDNEEVLKVF 83 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H G D+ +++ G P+F T+IA + + Q G + ++ +GI + K + +D Sbjct: 84 HAGGQDVEIVYNFTGKTPHPIFDTQIAM-MAISQNEQIGYANLVESWMGITVDKGARFTD 142 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 W L+D Q++YA DV HL + +KL + GR + + L D A Sbjct: 143 WGRRPLTDRQIEYAIGDVTHLSKIFPMILKKLIKTGRGVWLDAEMDKLADPA 194 >gi|163759179|ref|ZP_02166265.1| putative ribonuclease D [Hoeflea phototrophica DFL-43] gi|162283583|gb|EDQ33868.1| putative ribonuclease D [Hoeflea phototrophica DFL-43] Length = 383 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE L LC++Q++ D + +A G P ++ D K+FH Sbjct: 23 VTVDTEFLRETTYWPELCLIQMAGPDDEGIVDPLAEGIDLKP-FFELMADTSVVKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++ + + P+F T++A+ + + + + G +I K+ + +DWS Sbjct: 82 RQDIEIMVHRGDLVPHPIFDTQVAAMVC-GFGESISYDQLVSRITGAHIDKSSRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV HL + L+ +L+ GRS L RA ++ Sbjct: 141 RPLSDKQLDYALADVTHLRDVYLELLSRLKAEGRSHWVADEMAVLESRATYEI 193 >gi|159044436|ref|YP_001533230.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12] gi|157912196|gb|ABV93629.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12] Length = 385 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 6/173 (3%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS-PGDG---TVDIIRIAAGQKNAPNLVGMLVDEKRE 76 D + VDTE L +LC+VQL+ PG+G V + +A G AP ++ + + Sbjct: 21 DYVTVDTEFLRERTYYAKLCLVQLAYPGEGEETAVLVDPLAEGMSLAP-MLDLFRNPDVV 79 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH R D+ + F GV P+F T++A+ + + Q G + ++++ ++ K + Sbjct: 80 KVFHAARQDLEIFFVEHGVFPEPLFDTQVAAMVC-GFGEQVGYETLVRKIARESLDKTSR 138 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +DWS LS Q +YA +DV HL + + + GR L+D Sbjct: 139 FTDWSHRPLSKAQKKYALADVTHLRVIYEYLAAAIDKTGRRAWVEEELQGLLD 191 >gi|258541225|ref|YP_003186658.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256632303|dbj|BAH98278.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256635360|dbj|BAI01329.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03] gi|256638415|dbj|BAI04377.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07] gi|256641469|dbj|BAI07424.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22] gi|256644524|dbj|BAI10472.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26] gi|256647579|dbj|BAI13520.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32] gi|256650632|dbj|BAI16566.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653623|dbj|BAI19550.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12] Length = 402 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 2/169 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + LC+VQ+ + V I +A G P L + VD K+FH Sbjct: 34 VTVDTEFMREQTYWPELCLVQIGATNDVVLIDALADGIDLTP-LKNLFVDTAVLKVFHAA 92 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F P+F T++A+ + + +Q G + L G I K+ + +DWS Sbjct: 93 RQDLEIFLHLFDALPTPLFDTQVAA-MVAGFGDQVGYDSLVGSLTGHMIDKSHRFTDWSV 151 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 LS QL YAA DV L + + +KL++ R D + L D A Sbjct: 152 RPLSPAQLTYAAGDVTWLRLVYERLVKKLEQEQRLDWVAAEMAELEDPA 200 >gi|227821514|ref|YP_002825484.1| ribonuclease D [Sinorhizobium fredii NGR234] gi|227340513|gb|ACP24731.1| ribonuclease D [Sinorhizobium fredii NGR234] Length = 383 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE L LC++Q++ D V + +A G AP ++ + K+FH Sbjct: 21 ITIDTEFLRETTFWPELCLIQMAGPDTAVIVDPMAPGIDLAP-FFALMANADVVKVFHAA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++ + + P+F T++A+ + + + + + + I K+ + +DWS Sbjct: 80 RQDIEIIHHLGNLIPHPLFDTQVAAMVC-GFGDSVSYDQLVSRIKNVQIDKSSRFTDWSR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 L+D+QL YA +DV HL + +L+R GRS L R DL Sbjct: 139 RPLTDKQLDYALADVTHLRDVYHYLKAELEREGRSSWLAEEMAILESRETYDL 191 >gi|319408646|emb|CBI82301.1| Ribonuclease D [Bartonella schoenbuchensis R1] Length = 383 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 5/184 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + +LC++QL+ + T+ +I + + ++VDEK K+FH Sbjct: 21 DFVTVDTEFIRETTFWPQLCLIQLASPNVTM-LIDPMVPDIDLQSFFDLMVDEKIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI +++ G+ P+F T+IA + + + ++ G ++ K+ + +DW Sbjct: 80 AARQDIETIYHLGGIIPYPLFDTQIAGSIC-GFGDSISYDQIVQRCTGHHLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---G 197 S LS++QL YA +DV +L + L +KL++ R+ L+ D+ Sbjct: 139 SHRPLSEKQLLYALADVTYLRDVYLSLKKKLEKNKRTHWMDDELEILLTPTTYDIPEEDA 198 Query: 198 WENV 201 W+ V Sbjct: 199 WKKV 202 >gi|315500006|ref|YP_004088809.1| ribonuclease d [Asticcacaulis excentricus CB 48] gi|315418018|gb|ADU14658.1| ribonuclease D [Asticcacaulis excentricus CB 48] Length = 382 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 3/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I VDTE + +LC++Q + + II + + + +L D K+FH Sbjct: 23 ITVDTEFMRETTYWPKLCLIQAA-SEEHAGIIDPLSPDLDLKPFLDLLTDPAILKVFHAC 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + F G PVF T++A+ + + +Q +++++ ++I K + +DWS Sbjct: 82 RQDVEI-FNNLGAMPAPVFDTQVAA-MAAGFGDQVAYDSLVRQVIKVDIDKGSRFTDWSR 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS++QLQYA DV HL L + EKL+ R Sbjct: 140 RPLSEQQLQYALGDVTHLARLYPKLVEKLKAQNR 173 >gi|163746426|ref|ZP_02153784.1| ribonuclease D [Oceanibulbus indolifex HEL-45] gi|161380311|gb|EDQ04722.1| ribonuclease D [Oceanibulbus indolifex HEL-45] Length = 385 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAPNLVGM 69 E AARY D + VDTE L +LC+VQL+ PG V + +A G P L + Sbjct: 15 EEAARY-DYVTVDTEFLRERTYYSKLCLVQLAMPGTDDSNAVLVDPLAEGISLEP-LYTL 72 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 D K+FH R D+ + F V P+F T++A+ + + Q G + ++++ Sbjct: 73 FRDTSVVKVFHAARQDLEIFFVDAEVFPEPLFDTQVAAMVC-GFGEQVGYETLVRKIAHQ 131 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + K + +DWS L+D Q YA +DV HL + KL+ GR+ Sbjct: 132 ALDKTSRFTDWSRRPLTDAQKTYALADVTHLRQIYEFLARKLEETGRA 179 >gi|170742646|ref|YP_001771301.1| ribonuclease D [Methylobacterium sp. 4-46] gi|168196920|gb|ACA18867.1| ribonuclease D [Methylobacterium sp. 4-46] Length = 394 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 3/139 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDII-RIAAGQKNAPNLVGMLVDEKREKIFHY 81 + VDTE + +LC++Q++ DGT ++ +A G AP ++ DE K+FH Sbjct: 23 VTVDTEFMRETTYYPKLCLIQIAAPDGTTALVDPLAPGIDLAP-FFALMGDEGVLKVFHS 81 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 R D+ +++ G+ +P F T++A+ + Y + + + ++ + K+ + +DWS Sbjct: 82 ARQDLEIIWLQGGLLPQPFFDTQVAAMVC-GYGDSVSYEQLVNDVAKAKVDKSSRFTDWS 140 Query: 142 ADDLSDEQLQYAASDVVHL 160 LS+ QL YA SDV HL Sbjct: 141 RRPLSEAQLTYALSDVTHL 159 >gi|319898851|ref|YP_004158944.1| Ribonuclease D [Bartonella clarridgeiae 73] gi|319402815|emb|CBI76366.1| Ribonuclease D [Bartonella clarridgeiae 73] Length = 385 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 2/163 (1%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 A R + + VDTE + +LC++Q++ D T +I A N +++D+K Sbjct: 15 AALRNSNFVTVDTEFIRETTFWPQLCLIQVASPDITT-LIDPMAQDINLQPFFDLMIDKK 73 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+FH R DI +++ GV P+F T++A + + + ++ G ++ K+ Sbjct: 74 VVKVFHAARQDIETIYHLGGVIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLDKS 132 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + +DWS LS++QL YA +DV +L + L ++L++ R+ Sbjct: 133 SRFTDWSCRPLSEKQLLYALADVTYLRDVYLTLKKQLEKKKRT 175 >gi|261868337|ref|YP_003256259.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413669|gb|ACX83040.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1] Length = 385 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AAR A+A+DTE + + +L ++Q+ GD V +I Q +P + +L D Sbjct: 29 AARQQSAVALDTEFVRVRTLYPKLGLIQMYFGD-RVALIDPLPIQDFSP-FIKLLADTNL 86 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V + F RP+ T++ + + G ++ I I K Sbjct: 87 VKILHACSEDLDVFQHYFQQLPRPMCDTQVMAHFL-GFAGSTGFATLVQHYFQIEIDKGA 145 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LSD QLQYAA+DV +L L Q ++L + + + C FL+++ Sbjct: 146 SRTDWLARPLSDTQLQYAAADVWYLLPLYEQMQQQLTQTEWQSVVENECEFLLNK 200 >gi|220924978|ref|YP_002500280.1| ribonuclease D [Methylobacterium nodulans ORS 2060] gi|219949585|gb|ACL59977.1| ribonuclease D [Methylobacterium nodulans ORS 2060] Length = 389 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 1/138 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC++Q++ DG+ ++ A + ++ DE+ K+FH Sbjct: 23 VTVDTEFMRETTYYPKLCLIQIAAPDGSTALVDPLAPAIDLTPFFALMGDERVLKVFHSA 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ G+ +P F T++A+ + Y + + + ++ I K+ + +DWS Sbjct: 83 RQDLEIIWLQGGLLPQPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKAKIDKSSRFTDWSR 141 Query: 143 DDLSDEQLQYAASDVVHL 160 LS+ QL YA SDV HL Sbjct: 142 RPLSEAQLSYALSDVTHL 159 >gi|307825065|ref|ZP_07655286.1| ribonuclease D [Methylobacter tundripaludum SV96] gi|307733813|gb|EFO04669.1| ribonuclease D [Methylobacter tundripaludum SV96] Length = 389 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 3/156 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE L + C++Q++ + I IA + L + K+FH Sbjct: 27 LALDTEFLREKTYYPKFCLLQIATPEWVACIDPIALPSLDI--LFEAIYSPSIVKVFHSC 84 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + G P+F T+IA+ L + G + LL +N++KA +DWS Sbjct: 85 RQDLEIFYQLTGKLPEPLFDTQIAAPLL-GFQENPGYAMLVSSLLNVNLNKAHTRADWSK 143 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L D ++QYAA DV++L + +KL LGR++ Sbjct: 144 RPLIDAEIQYAADDVIYLCKIYQMMLQKLAELGRAE 179 >gi|163735131|ref|ZP_02142567.1| ribonuclease D [Roseobacter litoralis Och 149] gi|161391589|gb|EDQ15922.1| ribonuclease D [Roseobacter litoralis Och 149] Length = 387 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 4/160 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS-PG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 D + VDTE L +LC++QL+ PG D T I+ + L + D K Sbjct: 21 DYVTVDTEFLRERTYYSKLCLIQLAMPGEDDSTGCIVDPLVPGLSLEPLYALFRDTSVVK 80 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FH R D+ + + V P+F T++A+ + + Q G + ++ + + K + Sbjct: 81 VFHAARQDLEIFYVDAEVFPEPLFDTQVAAMVC-GFGEQVGYETLVRRIAKQPLDKTSRF 139 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DWS L+D Q++YA +DV HL + EKL+ GRS Sbjct: 140 TDWSRRPLTDAQMKYALADVTHLRDVYEFLAEKLEETGRS 179 >gi|188533676|ref|YP_001907473.1| ribonuclease D [Erwinia tasmaniensis Et1/99] gi|188028718|emb|CAO96580.1| Ribonuclease D [Erwinia tasmaniensis Et1/99] Length = 373 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR V A+A+DTE + RL ++QL G+ T+ +I P +L D+K Sbjct: 19 ARQVPALALDTEFVRTRTYYPRLGLIQLYDGE-TISLIDPLPITDWTP-FSELLQDQKVI 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + FGV +P+ T+I + + + G ++ GI + K++ Sbjct: 77 KYLHAGSEDLEVFCHEFGVLPQPMIDTQILAAFSGRPLS-CGFATVVESFTGIALDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q QYAA+DV +L + + + + G+ A C L R Sbjct: 136 RTDWLARPLSEKQCQYAAADVFYLLPIAGKLVAEAESAGQMAAALDECRLLCQR 189 >gi|254443317|ref|ZP_05056793.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium DG1235] gi|198257625|gb|EDY81933.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium DG1235] Length = 370 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 12/166 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG---QKNAPNLVGMLVDEKREKIF 79 IA+D+E L +LC++QL DGT+ ++ + A + L G+ + I Sbjct: 28 IALDSEADNLHHFETKLCLLQLR-FDGTIYLLDVTADLDLDRFWEILSGLHL------IM 80 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H FD+ + G + +F + +AS+L + GL L+E G+ I K Q SD Sbjct: 81 HGSDFDLRLFEEFCGFEAKSLFDSMLASQLLGI--KRIGLAALLEENFGVKIPKDSQKSD 138 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 WS L+ + L+YAA+DV++LH LR + ++ LGR + C+ Sbjct: 139 WSQRPLTPKMLKYAATDVLYLHELRDKLMARIDELGRGEWLKQRCD 184 >gi|217976404|ref|YP_002360551.1| ribonuclease D [Methylocella silvestris BL2] gi|217501780|gb|ACK49189.1| ribonuclease D [Methylocella silvestris BL2] Length = 405 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 2/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE L +LC+VQL+ D V + +A+G AP L ++ D K+FH Sbjct: 29 VTVDTEFLRETTFWPKLCVVQLASADEAVAVDALASGLDLAP-LFELMADPAVVKVFHAA 87 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ + P+F T++A+ + + +Q D ++ + +++ K+ + +DWS Sbjct: 88 RQDLEIVWNLAKIIPAPLFDTQVAAMVC-GFGDQVSYGDLVQTVCKVSLDKSSRFTDWSR 146 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L Q+ YA +DV +L + +KL+ GR Sbjct: 147 RPLLPAQVDYAIADVTYLRDIYAILQDKLKETGR 180 >gi|284006971|emb|CBA72245.1| ribonuclease D [Arsenophonus nasoniae] Length = 386 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 8/181 (4%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73 AA IA+DTE + + +L ++QL G+ +D I I N +L D Sbjct: 30 AASKASKIALDTEFVRVKTYYPQLSLIQLYDGEQLSLIDPIAIT----NMEPFKNLLTDG 85 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K KI H G DI V F+ +P+ T+I + + G + + L I + K Sbjct: 86 KVTKILHAGSEDIEVFFHHLACVPQPMLDTQIMAAFV-GHPISSGFASLVNKYLTIALDK 144 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT-SCCNFLMDRAE 192 ++ +DW LSD+Q QYAA+DV L L + + + +LG T C L+ R E Sbjct: 145 SESRTDWLVRPLSDKQCQYAAADVFFLLPLAEKLQQLVDKLGYLPAVTDECQRILLRRQE 204 Query: 193 L 193 + Sbjct: 205 I 205 >gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3] gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3] Length = 382 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLS-PGDG-TVDIIRIAAGQKNAPNLVGMLVDEKREK 77 V +AVD E L +++C++Q+ GD +D + ++ + +L D K Sbjct: 28 VPVVAVDLEADSLHHFTEKVCLIQIGVNGDAFLIDPLALS----DLSSLKPFFADPGVIK 83 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H +D+ L+ FG+ + +F ++IASR + GL D + G+ + K + Sbjct: 84 VLHGADYDVRSLYRDFGITITGLFDSEIASRFLGVQST--GLNDVVNRRFGVTMDKGCRK 141 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 DW+ L ++ L YAA DV +L L Q +LQ++GR++ C L Sbjct: 142 QDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQMGRAEWVAEECELL 191 >gi|182412681|ref|YP_001817747.1| 3'-5' exonuclease [Opitutus terrae PB90-1] gi|177839895|gb|ACB74147.1| 3'-5' exonuclease [Opitutus terrae PB90-1] Length = 391 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 14/177 (7%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGM 69 P A VD +A+DTE + R R+C++Q G VD++ AP Sbjct: 36 PLLAALDRVDEVALDTEADNMFHYRTRVCLLQFLVGREIFLVDVL--------APLPFEG 87 Query: 70 LVDEKREK--IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 L EK I H FD+ +L R + +F T +A++L + GL L++ Sbjct: 88 LWARLAEKNLIMHGSDFDLRLLHDFCRFRPKSIFDTMLAAQLINR--PRIGLASLLEDHF 145 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 G+ +SK Q ++WS L+ + L YAA DV HL ALR T +L +LGR + C Sbjct: 146 GVKLSKESQKANWSKRPLTKKMLDYAALDVFHLPALRDILTRELTKLGRIEWLRQQC 202 >gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM 13280] gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM 13280] Length = 377 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 8/171 (4%) Query: 10 DIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A C AR AIA+DTE L +LC+VQ++ D V I +A L Sbjct: 8 DLTAFCNRARAFSAIAIDTEFLREKTYHAKLCLVQVATPDECVVIDPLAIDDLGP--LAE 65 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--TRTYTNQHGLKDNLKEL 126 ++ D K+FH D+ VL + G P+F T++A+ R + H L + Sbjct: 66 LMTDVDTLKVFHACSQDMEVLCHALGSVPAPIFDTQVAAGFLGERAQCSYHNL---VSTF 122 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G+++ K + +DWS LS +Q++YA DV +L KL LGR+ Sbjct: 123 CGVSLPKTESLTDWSRRPLSPKQIEYALDDVRYLIDAYRVIESKLHSLGRT 173 >gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4] gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4] Length = 409 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 4/154 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A D E L +++C++Q+S T I +A + L +L + K+FH Sbjct: 58 LAFDLEADSLHHYTEKVCLIQVSTNSETALIDPLAP--LDLSPLAPILANPAVRKVFHGA 115 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +D+ L+ FG VR +F T IAS+ + GL LK+ G+ + K Q +DWS Sbjct: 116 DYDMRSLYRDFGFEVRNLFDTMIASQFLGE--KEVGLAAALKKRFGVELDKKYQKADWSK 173 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 S + ++YA D L L LQ ++L+ GR Sbjct: 174 RPFSPQMIEYAMKDTSLLIKLYLQLEDELRAKGR 207 >gi|83311936|ref|YP_422200.1| ribonuclease D [Magnetospirillum magneticum AMB-1] gi|82946777|dbj|BAE51641.1| Ribonuclease D [Magnetospirillum magneticum AMB-1] Length = 397 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 2/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC+VQ++ D I +A AP L ++ D K+FH Sbjct: 23 VTVDTEFMREKTYWPQLCLVQVAGPDEARAIDPLAPDMDLAP-LFELMADTNVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + P+F T+IA+ + + + G + +L I K+ + +DWS Sbjct: 82 RQDVEIFLHLADAIPTPIFDTQIAAMVC-GFGDSVGYETLASQLAKARIDKSMRFTDWSI 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS++Q+QYA +DV HL + K+++ GR Sbjct: 141 RPLSEKQIQYALADVTHLRVAYEKLVRKVEKNGR 174 >gi|85708161|ref|ZP_01039227.1| ribonuclease D [Erythrobacter sp. NAP1] gi|85689695|gb|EAQ29698.1| ribonuclease D [Erythrobacter sp. NAP1] Length = 400 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 1/154 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTE + LC+VQ++ + I +A G +P L + +++ K+FH G Sbjct: 26 VAVDTEFMRENTYWPELCLVQIANTEEAAAIDPLADGIDLSPLLELLTENDEVLKVFHAG 85 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ ++ G P+F T+I S + + + Q G + + L I + K + +DWS Sbjct: 86 GQDVEIIVNMTGKTPFPIFDTQI-SMMAISQSEQIGYANLVDHWLNITVDKGARFTDWSR 144 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L+D Q++YA DV HL + + +KL + R Sbjct: 145 RPLTDRQIEYAIGDVTHLSKIFPKILKKLMKTER 178 >gi|83942499|ref|ZP_00954960.1| ribonuclease D [Sulfitobacter sp. EE-36] gi|83846592|gb|EAP84468.1| ribonuclease D [Sulfitobacter sp. EE-36] Length = 385 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 6/161 (3%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 D + VDTE L +LC++QL+ PG V + ++ G P L + D Sbjct: 21 DYVTVDTEFLRERTYYSKLCLIQLAMPGTDDSNAVLVDPLSEGLSLDP-LYTLFRDTSVV 79 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH R D+ + + GV P+F T++A+ + + Q G + ++++ + K + Sbjct: 80 KVFHAARQDLEIFYVDAGVFPEPLFDTQVAAMVC-GFGEQVGYETLVRKIAHQPLDKTSR 138 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DWS LSD Q +YA +DV HL + KL++ GR+ Sbjct: 139 FTDWSRRPLSDAQAKYALADVTHLRQIYEFLARKLEQTGRA 179 >gi|294013278|ref|YP_003546738.1| ribonuclease D [Sphingobium japonicum UT26S] gi|292676608|dbj|BAI98126.1| ribonuclease D [Sphingobium japonicum UT26S] Length = 401 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 1/156 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVDTE + LC+VQ++ I A G +P L M+ +E K+FH G Sbjct: 39 IAVDTEFMRENSYWPDLCLVQVADEHEAAAIDPKAPGLDLSPLLDLMVDNEDVLKVFHAG 98 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ +++ G P+F T+IA+ + Q G + + LG+ + K + +DW+ Sbjct: 99 GQDLEIIYNLTGKTPHPLFDTQIAA-MALGLGEQIGYGNLVDAWLGVQLDKGARFTDWAR 157 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L Q+ YA DV +L + + E+L+R GR D Sbjct: 158 RPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTGRGD 193 >gi|83953718|ref|ZP_00962439.1| ribonuclease D [Sulfitobacter sp. NAS-14.1] gi|83841663|gb|EAP80832.1| ribonuclease D [Sulfitobacter sp. NAS-14.1] Length = 385 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 10/183 (5%) Query: 1 MTTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDII 54 M TI ++ A C AA++ D + VDTE L +LC++QL+ PG V + Sbjct: 1 MKTI-TTTAELEAYCTEAAKH-DYVTVDTEFLRERTYYSKLCLIQLAMPGTDDSNAVLVD 58 Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 ++ G P L + D K+FH R D+ + + GV P+F T++A+ + + Sbjct: 59 PLSEGLSLDP-LYTLFRDTSVVKVFHAARQDLEIFYVDAGVFPEPLFDTQVAAMVC-GFG 116 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 Q G + ++++ + K + +DWS LSD Q +YA +DV HL + KL++ Sbjct: 117 EQVGYETLVRKIAHQPLDKTSRFTDWSRRPLSDAQAKYALADVTHLRQIYEFLARKLEQT 176 Query: 175 GRS 177 GR+ Sbjct: 177 GRA 179 >gi|83593408|ref|YP_427160.1| ribonuclease D [Rhodospirillum rubrum ATCC 11170] gi|83576322|gb|ABC22873.1| Ribonuclease D [Rhodospirillum rubrum ATCC 11170] Length = 386 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 2/155 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC++QL+ G + A + L ++ +E K+FH Sbjct: 23 VTVDTEFMREKTYWPKLCLIQLA-GTTEAHCVDPLAPDIDMAPLFALMANESVLKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + G +P+F T++A+ + + + G + + +L I K+ + +DW+ Sbjct: 82 RQDLEIFLHESGHLPKPIFDTQVAAMVC-GFGDSVGYETLVAKLAKARIDKSMRFTDWAR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L+D QL YAA DV HL + + E L GR+ Sbjct: 141 RPLNDRQLVYAAGDVTHLRVVYERLAETLAANGRT 175 >gi|73667317|ref|YP_303333.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] gi|72394458|gb|AAZ68735.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] Length = 386 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 3/143 (2%) Query: 23 IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 IA+DTE + RLC++Q++ G +I + A + L +L ++ K+FH Sbjct: 24 IAIDTEFIRNSSEYYPRLCLMQVAYGREQF-VIDVLASDMDLSPLNSILYNKNIVKVFHD 82 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-AQQSSDW 140 R DI L F P+F T++A+ Y N G +++ LGI++ K + + S+W Sbjct: 83 CRQDIDALLTKFPKIPNPIFDTQVAAMFCYCYENAVGYSRLVEQFLGISLDKLSLKRSNW 142 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 LS +++QYA +DV++LH L Sbjct: 143 MLRPLSPDKIQYALNDVIYLHEL 165 >gi|126735792|ref|ZP_01751537.1| ribonuclease D [Roseobacter sp. CCS2] gi|126714979|gb|EBA11845.1| ribonuclease D [Roseobacter sp. CCS2] Length = 385 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 8/196 (4%) Query: 1 MTTIRVHEGDIPAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M TI E D+ A C A + VDTE L +LC+VQL+ G V + Sbjct: 1 MKTITTTE-DLAAFCQEAAKRAYVTVDTEFLRERTYYSKLCLVQLAYQDDSGADAVLLDP 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 + G P L + D K+FH R D+ + + GV P+F T++A+ + + Sbjct: 60 LVDGLSLEP-LYDLFKDHGVVKVFHAARQDLEIFYVDAGVIPEPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + ++++ ++ K+ + +DWS L+D Q +YA +DV HL + + +L + G Sbjct: 118 QVGYETLVRKITKSDLDKSSRFTDWSRRPLTDAQAKYALADVTHLRDIYEHLSARLAKSG 177 Query: 176 RSDLATSCCNFLMDRA 191 RS L D A Sbjct: 178 RSKWVAEEMAVLEDPA 193 >gi|307317748|ref|ZP_07597186.1| ribonuclease D [Sinorhizobium meliloti AK83] gi|306896510|gb|EFN27258.1| ribonuclease D [Sinorhizobium meliloti AK83] Length = 383 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE L LC++Q++ + V + +A G AP ++ + K+FH Sbjct: 21 ITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGIDLAP-FFALMSNPDVVKVFHAA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++ + + P+F T++A+ + + + + + I K+ + +DWS Sbjct: 80 RQDIEIIHHLGNLIPHPIFDTQVAA-MVCGFGDSVSYDQLVNRIKNEQIDKSSRFTDWSR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 L+D+QL YA +DV HL + T++L R GRS L R DL Sbjct: 139 RPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEEMAILESRETYDL 191 >gi|254474856|ref|ZP_05088242.1| ribonuclease D [Ruegeria sp. R11] gi|214029099|gb|EEB69934.1| ribonuclease D [Ruegeria sp. R11] Length = 385 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 9/192 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + VDTE L +LC+VQL+ PG + V + +A G P L + +E K+ Sbjct: 23 VTVDTEFLRERTYFSKLCLVQLAYPGKDNENAVLVDPLADGLSLEP-LYALFRNESVVKV 81 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH R D+ + + V P+F T++A+ + + Q G + +++++ + K + + Sbjct: 82 FHAARQDLEIFWVDAQVFPTPLFDTQVAAMVC-GFGEQVGYETLVRKIVKQGLDKTSRFT 140 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL-- 196 DWS LSD Q YA +DV HL + +L+R RS L D A ++ Sbjct: 141 DWSRRPLSDAQKTYALADVTHLRQIYEHLAAELKRTERSHWVAEELQVLTDPATYEINPR 200 Query: 197 -GWENVDIFSHS 207 W V ++S Sbjct: 201 DAWRRVKTRTNS 212 >gi|15964944|ref|NP_385297.1| ribonuclease D protein [Sinorhizobium meliloti 1021] gi|307301014|ref|ZP_07580783.1| ribonuclease D [Sinorhizobium meliloti BL225C] gi|15074123|emb|CAC45770.1| Probable ribonuclease D [Sinorhizobium meliloti 1021] gi|306903969|gb|EFN34555.1| ribonuclease D [Sinorhizobium meliloti BL225C] Length = 383 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE L LC++Q++ + V + +A G AP ++ + K+FH Sbjct: 21 ITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGIDLAP-FFALMSNPDVVKVFHAA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++ + + P+F T++A+ + + + + + I K+ + +DWS Sbjct: 80 RQDIEIIHHLGNLIPHPIFDTQVAA-MVCGFGDSVSYDQLVNRIKNEQIDKSSRFTDWSR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 L+D+QL YA +DV HL + T++L R GRS L R DL Sbjct: 139 RPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEEMAILESRETYDL 191 >gi|16125948|ref|NP_420512.1| ribonuclease D [Caulobacter crescentus CB15] gi|221234713|ref|YP_002517149.1| ribonuclease D [Caulobacter crescentus NA1000] gi|13423116|gb|AAK23680.1| ribonuclease D [Caulobacter crescentus CB15] gi|220963885|gb|ACL95241.1| ribonuclease D [Caulobacter crescentus NA1000] Length = 389 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 3/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTE + +LC++Q++ I +A P LV ++ DE+ K+FH Sbjct: 23 VAVDTEFMRETTYWPKLCLIQVASPTQEAVIDPLADNIDLEPLLV-VMRDERILKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + F +P+F T++A + + Q ++++L I I K+ + +DW+ Sbjct: 82 RQDVEI-FNNLKAMPKPLFDTQVAG-MAAGFGEQIAYDALVRQMLRIEIDKSSRFTDWAR 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L+D QL YA +DV HL L E+L+ GR Sbjct: 140 RPLTDAQLSYALADVTHLAKLFPILRERLETSGR 173 >gi|307295006|ref|ZP_07574848.1| ribonuclease D [Sphingobium chlorophenolicum L-1] gi|306879480|gb|EFN10698.1| ribonuclease D [Sphingobium chlorophenolicum L-1] Length = 388 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 1/156 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IA+DTE + LC+VQ++ I A G +P L M+ +E K+FH G Sbjct: 26 IAIDTEFMRENSYWPDLCLVQVADEHEAAAIDPKAPGLDLSPLLDLMVDNEDVLKVFHAG 85 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ +++ G P+F T+IA+ + Q G + + LG+ + K + +DW+ Sbjct: 86 GQDLEIIYNLTGKTPHPLFDTQIAA-MALGLGEQIGYGNLVDAWLGVQLDKGARFTDWAR 144 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L Q+ YA DV +L + + E+L+R GR D Sbjct: 145 RPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTGRGD 180 >gi|84687040|ref|ZP_01014923.1| ribonuclease D [Maritimibacter alkaliphilus HTCC2654] gi|84665014|gb|EAQ11495.1| ribonuclease D [Rhodobacterales bacterium HTCC2654] Length = 387 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 7/172 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRI---AAGQKNAPNLVGMLVDEKREK 77 + VDTE L +LC+VQL+ D VD + + A G P L + DE K Sbjct: 23 VTVDTEFLRERTYYSKLCLVQLAVMGDDDEVDAVLVDPLADGLSLEP-LYELFRDEGVVK 81 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FH R D+ + + G+ P+F T++A+ + + +Q G + ++++ + K+ + Sbjct: 82 VFHAARQDLEIFYVDAGLIPSPLFDTQVAAMVC-GFGDQAGYETLVRKIAKAQLDKSSRF 140 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +DWS L+D Q +YA DV HL + +L+ GR+ + L D Sbjct: 141 TDWSRRPLTDAQKKYAIGDVTHLRVIYEFLKAQLEETGRAKWVKEELSVLTD 192 >gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2] gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2] Length = 381 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 4/165 (2%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 AIAVD E + ++++C++Q S + + +A K+ L + KIFH Sbjct: 29 AIAVDLEADSMFHYQEKVCLLQFSTPSKNILVDPLAV--KDLSPLAPIFKSFGICKIFHG 86 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 +DI L+ F + V +F T+IA+R GL L+ L I + K Q DWS Sbjct: 87 ADYDIRSLYRDFKIEVNALFDTQIAARFLGL--TDIGLASLLQGKLNITLKKKYQKKDWS 144 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 L LQYA D HL L E+L + GR C Sbjct: 145 QRPLPAPMLQYAVHDTCHLIPLAQNLREELVKTGRLPFVEEECQL 189 >gi|94497624|ref|ZP_01304192.1| ribonuclease D [Sphingomonas sp. SKA58] gi|94422841|gb|EAT07874.1| ribonuclease D [Sphingomonas sp. SKA58] Length = 412 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 14/191 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIFHY 81 +AVDTE + LC+VQ++ I A G P L+ +LVD E K+FH Sbjct: 50 VAVDTEFMRENSYWPDLCLVQVADSHEAAAIDPKAPGIDLTP-LLNLLVDNEDVLKVFHA 108 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 G DI ++ G P+F T+IA+ + + Q G + + LG+ + K + +DW+ Sbjct: 109 GGQDIEIVHNLTGKAPHPMFDTQIAA-MALGFGEQIGYGNLVDAWLGVQLDKGARFTDWA 167 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-------ATSCCNFLMDRAELD 194 L Q+ YA DV +L + + E+L++ GR D ++ N+ D A+ Sbjct: 168 RRPLDKRQIDYAIGDVTYLIKIFPKMLEELKKTGRGDWLDQEMERISNPSNYENDPAD-- 225 Query: 195 LLGWENVDIFS 205 W+ V I S Sbjct: 226 --AWKRVRIAS 234 >gi|27379246|ref|NP_770775.1| ribonuclease D [Bradyrhizobium japonicum USDA 110] gi|27352397|dbj|BAC49400.1| ribonuclease D [Bradyrhizobium japonicum USDA 110] Length = 382 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 5/172 (2%) Query: 9 GDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 D+ A C+ A++ I VDTE L LC+VQ++ + + I +A G P Sbjct: 8 ADLAAACSRLAKH-PVITVDTEFLRETTYYPLLCVVQMASPEEAIVIDTLAVGIDLKP-F 65 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 ++ +E K+FH R DI ++++ + PVF T++A+ + Y + ++++ Sbjct: 66 FELMGNEAVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAA-MVLGYGDSIAYDQLVEKV 124 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 G K + +DWS L+ EQ+ YA SDV HL + L++ RS+ Sbjct: 125 TGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSE 176 >gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01] gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01] Length = 388 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 8/151 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVD E + +++ C++Q++ ++ I + L +L +++ +KIFH Sbjct: 37 IAVDLEADSMFHYQEKACLLQIT--SNGLNYIVDPLCDCDVKALAPILENDEIQKIFHGA 94 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +D+ LF FG+ + +F T++A+R Q GL L+ G+ + K Q +WS Sbjct: 95 DYDVRCLFRDFGIELHNLFDTQVAARFLGE--PQTGLAPLLESRFGVQLEKKYQKKNWSL 152 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L E + YAA+D VHL L+ E L++ Sbjct: 153 RPLPPEMMAYAANDTVHL----LELAEILKK 179 >gi|329114834|ref|ZP_08243590.1| Ribonuclease D [Acetobacter pomorum DM001] gi|326695731|gb|EGE47416.1| Ribonuclease D [Acetobacter pomorum DM001] Length = 406 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 2/169 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + LC+VQ+ V I +A G P L + D K+FH Sbjct: 38 VTVDTEFMREQTYWPELCLVQIGATHDIVLIDALAEGIDLTP-LKNLFADTAVLKVFHAA 96 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F P+F T++A+ + + +Q G + L G I K+ + +DWS Sbjct: 97 RQDLEIFLHLFDALPTPLFDTQVAA-MVAGFGDQVGYDSLVGSLTGHMIDKSHRFTDWSV 155 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 LS QL YAA DV L + + +KL++ R D + L D A Sbjct: 156 RPLSPAQLTYAAGDVTWLRLVYERLVKKLEQEQRLDWVAAEMAELEDPA 204 >gi|254562078|ref|YP_003069173.1| ribonuclease D [Methylobacterium extorquens DM4] gi|254269356|emb|CAX25322.1| Ribonuclease D (RNase D) [Methylobacterium extorquens DM4] Length = 384 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC++Q++ DG ++ A + ++ DE K+FH Sbjct: 23 VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSA 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ G+ +P F T++A+ + Y + + + ++ I K+ + +DWS Sbjct: 83 RQDLEIIWLLGGLLPQPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141 Query: 143 DDLSDEQLQYAASDVVHL 160 LS+ QL YA SDV HL Sbjct: 142 RPLSEAQLAYALSDVTHL 159 >gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1] gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1] Length = 380 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 8/162 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS-PG-DGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + IAVDTE+ GL ++++C++Q S PG D VD + N L + + EK+ Sbjct: 29 EQIAVDTESNGLHAYQEQICLIQFSVPGADYLVDPL----ASVNLSGLNEIFSNPGIEKV 84 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH +DI L FG +F T IA+R+ ++ GL L+E G+ + K Q + Sbjct: 85 FHAAEYDILCLKRDFGFTFTHLFDTMIAARILGR--SEVGLAALLEEHFGVTLDKRYQRA 142 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +W+ L L YA D +L LR ++L G + LA Sbjct: 143 NWARRPLPPAMLNYARLDTHYLIDLRNHLAKELAERGLTALA 184 >gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626] gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626] Length = 376 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 7/162 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 A +V +AVDTE L +LC+VQ+S G+ +D + I + LV + D+K Sbjct: 16 AAHVPVLAVDTEFLREKTYYPKLCLVQVSTGEEIAAIDPLSI----DDLSPLVRLFEDQK 71 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+ H D+ VL Y PVF T++A+ Q ++ +G+++ K Sbjct: 72 IVKVIHACSQDLEVLLYGMHCACAPVFDTQLAAAFL-GMRQQASYASVVEHYMGVHLPKT 130 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + +DWS L EQL YA DV +L + E+L + R Sbjct: 131 ESLTDWSRRPLDPEQLVYAEDDVRYLPDIYRCMYERLMKTNR 172 >gi|163852332|ref|YP_001640375.1| ribonuclease D [Methylobacterium extorquens PA1] gi|163663937|gb|ABY31304.1| ribonuclease D [Methylobacterium extorquens PA1] Length = 384 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC++Q++ DG ++ A + ++ DE K+FH Sbjct: 23 VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSA 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ G+ +P F T++A+ + Y + + + ++ I K+ + +DWS Sbjct: 83 RQDLEIIWLLGGLLPQPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141 Query: 143 DDLSDEQLQYAASDVVHL 160 LS+ QL YA SDV HL Sbjct: 142 RPLSEAQLAYALSDVTHL 159 >gi|262276193|ref|ZP_06054002.1| ribonuclease D [Grimontia hollisae CIP 101886] gi|262220001|gb|EEY71317.1| ribonuclease D [Grimontia hollisae CIP 101886] Length = 405 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 11/178 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR V A+ +DTE + RL ++QL G+ T+ +I +P L G+L DE Sbjct: 50 ARQVPAVMLDTEFVRTRTLYPRLGLIQLYDGE-TLSLIDPIELDDLSP-LWGLLTDESVV 107 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132 K+ H D+ V ++ G P+ T+I + HGL ++E L + + Sbjct: 108 KVLHACSEDLEVFYHYAGAMPTPMVDTQIMAAFL-----GHGLSTGFASLVEEYLVVTLD 162 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K + +DW A LS++QL+YAA+DV +L L + ++++ G + C + + Sbjct: 163 KGEARTDWCARPLSEKQLEYAAADVYYLLPLYNELSKRVSAAGWDEAVKQECALMASK 220 >gi|240139668|ref|YP_002964145.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1] gi|240009642|gb|ACS40868.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1] Length = 384 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC++Q++ DG ++ A + ++ DE K+FH Sbjct: 23 VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSA 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ G+ +P F T++A+ + Y + + + ++ I K+ + +DWS Sbjct: 83 RQDLEIIWLLGGLLPQPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141 Query: 143 DDLSDEQLQYAASDVVHL 160 LS+ QL YA SDV HL Sbjct: 142 RPLSEAQLAYALSDVTHL 159 >gi|218531091|ref|YP_002421907.1| ribonuclease D [Methylobacterium chloromethanicum CM4] gi|218523394|gb|ACK83979.1| ribonuclease D [Methylobacterium chloromethanicum CM4] Length = 384 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC++Q++ DG ++ A + ++ DE K+FH Sbjct: 23 VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSA 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ G+ +P F T++A+ + Y + + + ++ I K+ + +DWS Sbjct: 83 RQDLEIIWLLGGLLPQPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141 Query: 143 DDLSDEQLQYAASDVVHL 160 LS+ QL YA SDV HL Sbjct: 142 RPLSEAQLAYALSDVTHL 159 >gi|260433597|ref|ZP_05787568.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157] gi|260417425|gb|EEX10684.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157] Length = 424 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 6/159 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + VDTE L +LC++Q++ P D V + +A G P L + +E K+ Sbjct: 62 VTVDTEFLRERTYYSKLCLIQMAVPSEDEDSAVLVDPLADGLSLDP-LYELFQNEDVVKV 120 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH R D+ + + G+ +P+F T++A+ + + Q G + ++++ + K + + Sbjct: 121 FHAARQDLEIFWVEAGIFPKPLFDTQVAA-MVCGFGEQVGYETLVRKICKQGLDKTSRFT 179 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 DWS LSD Q YA +DV HL + +L++ GRS Sbjct: 180 DWSRRPLSDAQKTYALADVTHLRQIYEYLAAELEKTGRS 218 >gi|328543996|ref|YP_004304105.1| ribonuclease d protein [polymorphum gilvum SL003B-26A1] gi|326413740|gb|ADZ70803.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1] Length = 394 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 77/141 (54%), Gaps = 2/141 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE L +LC++Q++ D V + +A G AP L ++ +E+ K+FH Sbjct: 21 DYVTVDTEFLRETTFWPKLCVIQMAGPDDAVIVDALADGLDLAPFL-DLMRNERVTKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++++ G+ P+F T++A+ + + + ++ + G I K+ + +DW Sbjct: 80 AARQDIEIVYHLGGLIPHPLFDTQVAAMVC-GFGDSISYDQLVQRITGARIDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLH 161 + L+ +QL YA +DV +L Sbjct: 139 ARRPLTQKQLDYALADVTYLR 159 >gi|260426693|ref|ZP_05780672.1| ribonuclease D [Citreicella sp. SE45] gi|260421185|gb|EEX14436.1| ribonuclease D [Citreicella sp. SE45] Length = 385 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 6/159 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDG---TVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + VDTE L +LC++QL+ PG G V + + G P L+ + + K+ Sbjct: 23 VTVDTEFLRERTYYSKLCLIQLAFPGKGDENAVLVDPLVDGLDLEP-LLELFRNTAVVKV 81 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH R D+ + F GV P+F T++A+ + + Q G + +K + + K+ + + Sbjct: 82 FHAARQDLEIFFIDHGVIPDPLFDTQVAAMVC-GFGEQVGYETLVKRIAKQALDKSSRFT 140 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 DWS L++ Q +YA +DV HL + +L+R GR+ Sbjct: 141 DWSRRPLTEAQKKYALADVTHLRVIYEYLAAELERTGRA 179 >gi|310767817|gb|ADP12767.1| ribonuclease D [Erwinia sp. Ejp617] Length = 369 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR V A+A+DTE + RL ++QL G+ T+ +I P +L+D++ Sbjct: 15 ARRVPALALDTEFVRTRTYYPRLGLIQLYDGE-TISLIDPLPITDWTP-FRDLLLDQQVI 72 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + FGV +P+ T+I + + + G ++ GI + K++ Sbjct: 73 KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS-CGFATIVESFTGIALDKSES 131 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q +YAA+DV +L + + ++ + G+ A C L R Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIASKLVDETEAAGQMAAALDECRLLCQR 185 >gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601] gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601] Length = 388 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D+I+VDTE+ G ++C++Q+S G II Q N +L + D+K KIFH Sbjct: 27 DSISVDTESSGYYTYFSKVCLIQIS-AKGKNYIIDPLKLQ-NLESLGNLFEDKKILKIFH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L FG + + + T +SRL Q+ L + I +SK +Q S+W Sbjct: 85 SAIDDIKALKKDFGFQFQNIADTGFSSRLLDH--EQYSLTYLVDYYHKIKLSKKEQKSNW 142 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L QLQYAA D V+L + + E+L Sbjct: 143 EKRPLEKSQLQYAALDTVYLETIWEKMKEEL 173 >gi|295689658|ref|YP_003593351.1| ribonuclease D [Caulobacter segnis ATCC 21756] gi|295431561|gb|ADG10733.1| ribonuclease D [Caulobacter segnis ATCC 21756] Length = 389 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 5/174 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +AVDTE + +LC++Q+ SP V I A + L+ ++ DE+ K+FH Sbjct: 23 VAVDTEFMRETTYWPKLCLIQVASPTHEAV--IDPLADDIDLEPLLAVMRDERILKVFHA 80 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 R D+ + F +P+F T++A + + Q ++++L I + K+ + +DW+ Sbjct: 81 ARQDVEI-FNNLKAMPKPLFDTQVAG-MAAGFGEQIAYDALVRQMLRIELDKSSRFTDWA 138 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 L++ QL YA +DV HL AL E+L+ GR + D A D+ Sbjct: 139 RRPLTEAQLTYALADVTHLAALFPILRERLETSGRLAWVEEEMTAISDPAAYDV 192 >gi|259908266|ref|YP_002648622.1| ribonuclease D [Erwinia pyrifoliae Ep1/96] gi|224963888|emb|CAX55391.1| Ribonuclease D [Erwinia pyrifoliae Ep1/96] gi|283478197|emb|CAY74113.1| rnd [Erwinia pyrifoliae DSM 12163] Length = 369 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR V A+A+DTE + RL ++QL G+ T+ +I P +L+D++ Sbjct: 15 ARRVPALALDTEFVRTRTYYPRLGLIQLYDGE-TISLIDPLPITDWTP-FRDLLLDQQVI 72 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + FGV +P+ T+I + + + G ++ GI + K++ Sbjct: 73 KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS-CGFATIVESFTGIALDKSES 131 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q +YAA+DV +L + + ++ + G+ A C L R Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIASKLVDETEAAGQMAAALDECRLLCQR 185 >gi|293392299|ref|ZP_06636633.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952833|gb|EFE02952.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1] Length = 385 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AAR A+A+DTE + + +L ++Q+ GD V +I Q +P + +L D Sbjct: 29 AARQQSAVALDTEFVRVRTLYPKLGLIQMYFGD-QVALIDPLPIQDFSP-FIELLADTNL 86 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T++ + + G ++ I I K Sbjct: 87 VKILHACSEDLDVFQRYFQQLPRPMCDTQVMAHFL-GFAGSTGFATLVQHYFQIEIDKGA 145 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LSD QLQYAA+DV +L L Q ++L + + C FL+++ Sbjct: 146 SRTDWLARPLSDTQLQYAAADVWYLLPLYGQMQQQLTQTEWQSAVENECEFLLNK 200 >gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148] Length = 640 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/152 (36%), Positives = 76/152 (50%), Gaps = 17/152 (11%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREK 77 ++ DTETL L P R +L ++QL D +D ++ G + +L R Sbjct: 20 SLCFDTETLQLQPERGKLRLLQLGARDRDTIVLIDCFQLDKG--DWADLRWFFSTPDRFW 77 Query: 78 IFHYGRFDIAVL----FYTFGVRVRPVFCTKIASRL-TRTYTN-QHGLKDNLKELLGINI 131 + H FD+ L Y G V C+ +ASRL T N +HGL +K L + Sbjct: 78 LAHNAVFDLGWLQEHNIYPAGW----VRCSMLASRLLTNGLPNSKHGLDSVVKRYLKKEL 133 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 SK QQ SDWS DLS+EQL+YAA+DV L L Sbjct: 134 SKEQQRSDWSG-DLSEEQLEYAANDVAALMEL 164 >gi|254461790|ref|ZP_05075206.1| ribonuclease D [Rhodobacterales bacterium HTCC2083] gi|206678379|gb|EDZ42866.1| ribonuclease D [Rhodobacteraceae bacterium HTCC2083] Length = 385 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVD---IIRIAAGQKNAPNLVGMLVDEKREKI 78 + VDTE L +LC+VQL+ PG + + + G P L + D K+ Sbjct: 23 VTVDTEFLRERTYYSKLCLVQLAMPGTDDSNGCLVDPLVEGISLEP-LYDLFRDTSVVKV 81 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH R DI + GV P+F T++AS + + Q G + ++++ I K+ + + Sbjct: 82 FHAARQDIEIFQVDAGVIPTPLFDTQVASMVC-GFGEQVGYETLVRKIAKQEIDKSSRFT 140 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 DWS LSD Q +YA +DV HL + +KL+ GRS Sbjct: 141 DWSRRPLSDAQAKYALADVTHLRQVYEFLAKKLKDQGRS 179 >gi|149202482|ref|ZP_01879454.1| ribonuclease D [Roseovarius sp. TM1035] gi|149143764|gb|EDM31798.1| ribonuclease D [Roseovarius sp. TM1035] Length = 386 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 7/196 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIR 55 M TI + D+ A CA AR + +DTE L +LC++Q++ PG D V + Sbjct: 1 MKTITTTD-DLAAFCAMARKHPYVTLDTEFLRERTYYSKLCLLQMAVPGADDDTAVLVDP 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 I + + L + D K+FH R D+ + GV P+F T++A+ + + Sbjct: 60 IDGAEMSMEPLYELFRDTSVVKVFHAARQDLEIFHVDAGVIPDPLFDTQVAA-MVCGFGE 118 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + +K + + K+ + +DWS L++ Q YA +DV HL + +KL G Sbjct: 119 QVGYETLVKRIAKQTVDKSSRFTDWSRRPLTEAQKVYALADVTHLRVIYEYLAKKLASSG 178 Query: 176 RSDLATSCCNFLMDRA 191 R + L D A Sbjct: 179 RDKWVAEELSVLTDPA 194 >gi|256372386|ref|YP_003110210.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331] gi|256008970|gb|ACU54537.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331] Length = 396 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 5/129 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E +FH D+ ++ G R R +F T++A L L LG++ISKA+ Sbjct: 91 ELVFHAADQDLEIIERAVGARPRRIFDTQVAGGFL--GAGHASLGALLDRYLGVSISKAE 148 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 ++SDW L QL YAA+DV +L AL + E+L GR D A S L++R D+ Sbjct: 149 RTSDWLRRPLEPGQLAYAANDVRYLAALADRLLEELHARGREDWARSEMARLVERRRRDI 208 Query: 196 ---LGWENV 201 L W + Sbjct: 209 EPELAWTRI 217 >gi|254473302|ref|ZP_05086699.1| ribonuclease D [Pseudovibrio sp. JE062] gi|211957418|gb|EEA92621.1| ribonuclease D [Pseudovibrio sp. JE062] Length = 405 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 2/157 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE L +LC++Q++ D V + +A P ++ + K+FH Sbjct: 21 DFVTVDTEFLRETTFWPKLCVIQIANPDHAVLVDALAEDLDLEP-FFALMRNTDIVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++++ G P+F +++A+ + + + + ++ G I K+ + +DW Sbjct: 80 AARQDIEIIYHLGGFVPSPLFDSQVAAMVC-GFGDSVSYDQLVSKVTGERIDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 S L+++QL YA +DV HL + L ++L++ GRS Sbjct: 139 SRRPLTNKQLAYALADVTHLREVYLFLKKQLEQKGRS 175 >gi|99034557|ref|ZP_01314528.1| hypothetical protein Wendoof_01000660 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 409 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%) Query: 14 ECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A+ IAVDTE + + +L ++Q+S G+ + I+ + + + ++++ Sbjct: 32 ELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDTLVPEIDLSFIKKIMLN 90 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + K+FH R DI L F P+F T++A+ Y + G +++ GI + Sbjct: 91 QGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIALD 150 Query: 133 KAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K + ++SDW LS++QL YA +DVVHL+ L KL+ R Sbjct: 151 KIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNR 195 >gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo] gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis] Length = 1613 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 7/154 (4%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDG---TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +D ET GL R DR+ ++Q+S D +D+ ++ + L+ + K+ H Sbjct: 1061 LDIETTGLNHREDRIRLLQISTPDQPSVVIDVFKVPVPTLKECTWLVKLLGSQAVKVLHN 1120 Query: 82 GRFDIAVLFYTFGVRVR-PVFCTKIASRL-TRTYTNQHGLKDNLKE-LLGINISKAQQSS 138 G+FDI L + G V+ P+F T IA++L + T N ++ E L I + K+QQ S Sbjct: 1121 GKFDINFLSHN-GFNVKGPIFDTMIAAKLLSATRFNWSCKLGHVAERYLNIVLDKSQQFS 1179 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 DW+ D L +EQ+ YA+ D L L EKL+ Sbjct: 1180 DWTLDPLFEEQVIYASRDTAVLLPLYFILQEKLK 1213 >gi|188582284|ref|YP_001925729.1| ribonuclease D [Methylobacterium populi BJ001] gi|179345782|gb|ACB81194.1| ribonuclease D [Methylobacterium populi BJ001] Length = 384 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 1/138 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + +LC++Q++ DG ++ A + ++ DE K+FH Sbjct: 23 VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFELMADESTVKVFHSA 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ G+ P F T++A+ + Y + + + ++ I K+ + +DWS Sbjct: 83 RQDLEIIWLLGGLLPHPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141 Query: 143 DDLSDEQLQYAASDVVHL 160 LS+ QL YA SDV HL Sbjct: 142 RPLSEAQLAYALSDVTHL 159 >gi|148552971|ref|YP_001260553.1| ribonuclease D [Sphingomonas wittichii RW1] gi|148498161|gb|ABQ66415.1| ribonuclease D [Sphingomonas wittichii RW1] Length = 395 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 4/187 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + LC++Q++ + I A P L ++ +E+ K+FH G Sbjct: 30 VVVDTEFMRESTYWPDLCLIQIANSEEAAAIDPKAKDIDLTPLLDLLVENEEVLKVFHAG 89 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ ++ G P+F T++A+ + Q G + ++ +LGI + K + +DW+ Sbjct: 90 GQDLEIVHNLTGKTPYPLFDTQVAA-MAMGLGEQIGYSNLVETMLGIKLDKGARFTDWAR 148 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE---LDLLGWE 199 L Q+ YA DV HL A+ + E+L++ GR + L D A L L W Sbjct: 149 RPLDKRQIDYAIGDVTHLSAIFPRMLERLRKSGRGGWLDNEMERLGDPASYANLPELAWT 208 Query: 200 NVDIFSH 206 + + S Sbjct: 209 RIRLPSR 215 >gi|150396023|ref|YP_001326490.1| ribonuclease D [Sinorhizobium medicae WSM419] gi|150027538|gb|ABR59655.1| ribonuclease D [Sinorhizobium medicae WSM419] Length = 383 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE L LC++Q++ D V + +A G A + ++ + K+FH Sbjct: 21 ITIDTEFLRETTFWPELCLIQMASPDMAVIVDPMAPGIDLA-SFFALMGNADVVKVFHAA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI ++ + + P+F T++A+ + + + + + I K+ + +DWS Sbjct: 80 RQDIEIIHHLGNLIPHPLFDTQVAAMVC-GFGDSVSYDQLVSRIKNEQIDKSSRFTDWSR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 L+D+QL YA +DV HL + ++L+R GRS L +R DL Sbjct: 139 RPLTDKQLDYALADVTHLRDIYHYLVQELEREGRSSWLAEEMAILENRETYDL 191 >gi|42520085|ref|NP_966000.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409822|gb|AAS13934.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 392 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%) Query: 14 ECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A+ IAVDTE + + +L ++Q+S G+ + I+ + + + ++++ Sbjct: 15 ELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKKIMLN 73 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + K+FH R DI L F P+F T++A+ Y + G +++ GI + Sbjct: 74 QGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIALD 133 Query: 133 KAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K + ++SDW LS++QL YA +DVVHL+ L KL+ R Sbjct: 134 KIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNR 178 >gi|182678372|ref|YP_001832518.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039] gi|182634255|gb|ACB95029.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039] Length = 388 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 2/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE L +LC+VQL+ + V + +A G +P L ++ +E K+FH Sbjct: 23 VTVDTEFLRETTFWPKLCVVQLASTEEAVAVDALAEGLDLSP-LFELMANEATVKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ + P+F T++A+ + + +Q D ++ + +++ K+ + +DWS Sbjct: 82 RQDLEIIWNLAKLIPTPLFDTQVAAMVC-GFGDQISYGDLVQTVTRVSLDKSSRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS Q+ YA +DV +L + L KL+ R Sbjct: 141 RPLSPAQVDYAIADVTYLRDIYLYLRRKLETSSR 174 >gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 388 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 4/153 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D+I++DTE+ G ++C++Q+S G II Q N L + D+K KIFH Sbjct: 27 DSISIDTESSGYYTYFSKVCLIQIS-AKGKNYIIDPLKLQ-NLDGLGNLFEDKKILKIFH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L FG + + T +SRL Q+ L + I +SK +Q S+W Sbjct: 85 SAIDDIKALKKDFGFKFHNIADTGFSSRLLDH--EQYSLTYLVDYYHKIKLSKKEQKSNW 142 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L QLQYAA D V+L + + E+L + Sbjct: 143 EKRPLEKSQLQYAALDTVYLETIWEKMKEELTK 175 >gi|58697529|ref|ZP_00372780.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans] gi|58535998|gb|EAL59702.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans] Length = 284 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 3/169 (1%) Query: 10 DIPAECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 DI A+ IAVDTE + + +L ++Q+S G+ + I+ + + + Sbjct: 11 DICEGLIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKK 69 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +++++ K+FH R DI L F P+F T++A+ Y + G +++ G Sbjct: 70 IMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQG 129 Query: 129 INISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 I + K + ++SDW LS++QL YA +DVVHL+ L KL+ R Sbjct: 130 IALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNR 178 >gi|312113633|ref|YP_004011229.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100] gi|311218762|gb|ADP70130.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100] Length = 404 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 17/174 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PG-DGTVDIIRIAAGQKNAPNL-----VGMLVDEKR 75 + VDTE + R +LC++Q++ PG + VD + PNL ++ + Sbjct: 48 VTVDTEFMRQTTYRPKLCLIQMAAPGIEAVVDPL---------PNLDLSPFYALMANTAV 98 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH R DI +++ GV P+F T+IA+ + + + +K+LL N K Sbjct: 99 VKVFHAARQDIEIVWQEAGVIPMPLFDTQIAA-MALGHGDAISYGALVKKLLKKNHDKTY 157 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 Q+ DW L +QL+YA DV +L + + ++L++ GR L D Sbjct: 158 QAIDWCQRPLGPKQLEYALGDVTYLRDVYAKLKQRLEQTGREPWLEEEVAVLTD 211 >gi|84517066|ref|ZP_01004422.1| ribonuclease D [Loktanella vestfoldensis SKA53] gi|84508961|gb|EAQ05422.1| ribonuclease D [Loktanella vestfoldensis SKA53] Length = 385 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 6/173 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + VDTE L +LC+VQ++ G+ V + +A G P L + D K+ Sbjct: 23 VTVDTEFLRERTYYSKLCLVQMAYRDAAGEDAVLVDPLAEGISLDP-LYDLFRDPGVVKV 81 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH R D+ + GV P+F T++A+ + + Q G + ++++ + K+ + + Sbjct: 82 FHAARQDLEIFHVDAGVIPAPLFDTQVAAMVC-GFGEQAGYETLVRKIAKAEVDKSSRFT 140 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 DWS L+D Q +YA +DV HL + +L + GR+ L D A Sbjct: 141 DWSRRPLTDAQAEYALADVTHLRDVYEYLANRLAKSGRTKWVAEEMAVLNDPA 193 >gi|225156183|ref|ZP_03724663.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2] gi|224803073|gb|EEG21316.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2] Length = 389 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 6/173 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 P A V +A+DTE + + R+C++Q DG V ++ + P + Sbjct: 40 PFLAALDRVKEVALDTEADNMYHYQTRVCLLQFL-IDGEVWLVDLMTPLPLKPLWEKLAT 98 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + + H FD+ +L G R + +F T +A++L + GL L E G+ + Sbjct: 99 ---KHLVMHGSDFDLRLLHDLCGFRPKSLFDTMLAAQLLNR--QRIGLAALLSEHFGVTL 153 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 K Q ++WS L+ + L YA+ DV HL ALR T +L RLGR + C Sbjct: 154 DKGGQKANWSKRPLTPKLLDYASLDVWHLPALRDILTRELSRLGRMEWMEQQC 206 >gi|58698273|ref|ZP_00373191.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae] gi|225630014|ref|YP_002726805.1| Ribonuclease D [Wolbachia sp. wRi] gi|225677056|ref|ZP_03788062.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|58535197|gb|EAL59278.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae] gi|225590902|gb|EEH12123.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591995|gb|ACN95014.1| Ribonuclease D [Wolbachia sp. wRi] Length = 392 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 3/169 (1%) Query: 10 DIPAECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 DI A+ IAVDTE + + +L ++Q+S G+ + I+ + + + Sbjct: 11 DICEGLIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKK 69 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +++++ K+FH R DI L F P+F T++A+ Y + G +++ G Sbjct: 70 IMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQG 129 Query: 129 INISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 I + K + ++SDW LS++QL YA +DVVHL+ L KL+ R Sbjct: 130 IALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNR 178 >gi|88658362|ref|YP_507121.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas] gi|88599819|gb|ABD45288.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas] Length = 387 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 3/143 (2%) Query: 23 IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 IAVDTE + +LC++Q++ G +I + A + L + +E K+FH Sbjct: 24 IAVDTEFVRSSSEYYPKLCLIQIAYGKEQF-VIDVLAKDMDLSVLGHIFYNESIIKVFHD 82 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-AQQSSDW 140 R DI L F P+F T+IA+ Y N G +++ LGI++ K + + S+W Sbjct: 83 CRQDIDALLTKFPEIPSPIFDTQIAAMFCCCYDNAVGYSKLVEQFLGISLDKLSLKRSNW 142 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 + LS +++QYA +DV++L+ L Sbjct: 143 ALRPLSADKIQYALNDVIYLYEL 165 >gi|261253420|ref|ZP_05945993.1| ribonuclease D [Vibrio orientalis CIP 102891] gi|260936811|gb|EEX92800.1| ribonuclease D [Vibrio orientalis CIP 102891] Length = 371 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 22/180 (12%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73 +AR VD + +DTE + +L ++QL G+ +D I ++ V +L D Sbjct: 18 SARNVDVVMLDTEFVRTRTYYPQLGLIQLFDGEKLSLIDPTVI----EDMTAFVELLKDT 73 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGI 129 K+ H D+ V +FG P+ T++ + HGL L LG+ Sbjct: 74 SVLKVLHACGEDLEVFHNSFGCLPYPMVDTQLMAAFL-----GHGLSTGFAALVENYLGV 128 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-------RSDLATS 182 + K++ +DW A LSD+QL+YAA+DV +L L Q EK+ + G SDLA S Sbjct: 129 ELDKSESRTDWLARPLSDKQLEYAAADVYYLQPLYEQLFEKITQAGWWEAAQQESDLAAS 188 >gi|50121299|ref|YP_050466.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043] gi|49611825|emb|CAG75274.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043] Length = 374 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 5/177 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ + +I AP +L DE+ Sbjct: 19 ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGE-QLSLIDPLTITDWAP-FQALLRDEEVT 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V TFG P T+I A+ L + + +G + + +G+++ K++ Sbjct: 77 KFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPLS--YGFAALVADYMGVSLDKSE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A LS++Q YAA+DV +L + +Q + G + A C L R + Sbjct: 135 SRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTETAGWMNAALDECLLLCQRKQ 191 >gi|68171541|ref|ZP_00544920.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa] gi|67999046|gb|EAM85718.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa] Length = 387 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 3/143 (2%) Query: 23 IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 IAVDTE + +LC++Q++ G +I + A + L + +E K+FH Sbjct: 24 IAVDTEFVRSSSEYYPKLCLIQIAYGKEQF-VIDVLAKDMDLSVLGHIFYNESIIKVFHD 82 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-AQQSSDW 140 R DI L F P+F T+IA+ Y N G +++ LGI++ K + + S+W Sbjct: 83 CRQDIDALLTKFPEIPSPIFDTQIAAMFCCCYDNAVGYSKLVEQFLGISLDKLSLKRSNW 142 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 + LS +++QYA +DV++L+ L Sbjct: 143 ALRPLSADKIQYALNDVIYLYEL 165 >gi|254294269|ref|YP_003060292.1| ribonuclease D [Hirschia baltica ATCC 49814] gi|254042800|gb|ACT59595.1| ribonuclease D [Hirschia baltica ATCC 49814] Length = 390 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 2/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVDTE +LC++Q + + I ++ AP + ++ D R K+FH Sbjct: 31 IAVDTEFHRESTFWPKLCLIQAATLEFDCLIDPLSPNIDLAP-FLDLMADTSRVKVFHAA 89 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + G P+F +++A+ + + ++ + +LL + K+ Q +DW Sbjct: 90 RQDMEIFTKLIGTPPAPIFDSQVAA-MACGLGDSVSYENLVSQLLKARVDKSSQFTDWQR 148 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L+++QL YA DV HL ++ KL++LGR Sbjct: 149 RPLTEKQLDYARGDVTHLRHCYVKLKAKLEKLGR 182 >gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5] gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5] Length = 296 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 10/160 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+DTE+ R+R+C++Q+S D VD + + P+ +G ++ + RE + H Sbjct: 32 VALDTESNSFHVYRERICLLQVSTRAADYIVDPLAVD------PSPLGEVLCDGRETVLH 85 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ L +G + +F T A+R R GL ++ G+ +SK Q SDW Sbjct: 86 GADYDVRCLRREYGWHLPRLFDTMAAAR--RLGRQGLGLSALVEAHFGVRLSKTFQRSDW 143 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L+ QL YAA D +L ALR +L LG S+ A Sbjct: 144 GQRPLTAAQLAYAALDTHYLLALRDMLAGELDTLGASEQA 183 >gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter sp. FRC-32] gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter sp. FRC-32] Length = 390 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 4/154 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A D E L +++C++Q+S T I +A + L +L D K+FH Sbjct: 42 LAFDLEADSLHHYTEKVCLIQVSNLSQTALIDPLAPV--DLSPLAPVLADRGIRKVFHGA 99 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +D+ L+ FG+ V +F T IA + + GL LK+ G+ ++K Q +DWS Sbjct: 100 DYDMRSLYRDFGLEVCNMFDTMIACQFL--GEKEVGLAAALKKRFGVELNKKYQKADWSK 157 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 S E ++YA D L L LQ E+L+ GR Sbjct: 158 RPFSAEMIEYAKMDTALLIRLYLQLEEELRAKGR 191 >gi|119384625|ref|YP_915681.1| ribonuclease D [Paracoccus denitrificans PD1222] gi|119374392|gb|ABL69985.1| ribonuclease D [Paracoccus denitrificans PD1222] Length = 401 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 11/164 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQ--LSPGDGT-------VDIIRIAAGQKNAPNLVGMLVDE 73 + +DTE L +LC++Q L P T V I + G P L + + Sbjct: 35 VTLDTEFLRERTYYSKLCLIQAALPPASATKAAGGLSVLIDPLVEGLSLEP-LYDLFRHK 93 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+FH R D+ + F+ GV P+F T+IA+ + + Q G + +K++ + K Sbjct: 94 PTVKVFHAARQDLEIFFHDAGVMPDPLFDTQIAAMVC-GFGEQVGYETLVKKIARQPLDK 152 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + + +DWS LSD Q YA +DV HL A+ + +L + GR+ Sbjct: 153 SSRFTDWSHRPLSDAQAAYALADVTHLRAIYEFLSAQLDKTGRA 196 >gi|300717019|ref|YP_003741822.1| ribonuclease D [Erwinia billingiae Eb661] gi|299062855|emb|CAX59975.1| Ribonuclease D [Erwinia billingiae Eb661] Length = 373 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 3/177 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR A+A+DTE + L ++Q+ G+ + +I + AP +L+DEK Sbjct: 19 ARQFPALALDTEFVRTRTYYPGLGLIQMYDGE-NIALIDPLPITEWAP-FRDLLLDEKVI 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + + V P+ T+I + T + G ++ GI + K++ Sbjct: 77 KFLHAGSEDLEVFLHEYDVLPVPMIDTQILAAFTGRPLS-CGFATIVESFTGIALDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 +DW A L+++Q QYAA+DV +L + + + + GR + A + C+ L R ++ Sbjct: 136 RTDWLARPLTEKQCQYAAADVFYLLPIAHKLLAEAEESGRINAALNECSLLCQRRQM 192 >gi|56551610|ref|YP_162449.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4] gi|241761264|ref|ZP_04759352.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752797|ref|YP_003225690.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543184|gb|AAV89338.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4] gi|241374171|gb|EER63668.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552160|gb|ACV75106.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 390 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 3/159 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV-DEKREKI 78 D IA+DTE + LC++Q++ I +A G P L +LV +E K+ Sbjct: 23 ADFIAIDTEFIRENSYWPELCLIQIADDKEAAAIDPLAPGLDMTP-LTDLLVNNEDILKV 81 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH G D+ ++ + G P+F T+IA+ + Q G + ++ L I + K + + Sbjct: 82 FHAGGQDLEIILHHTGKMPFPLFDTQIAA-MALGVGEQVGYSNLVERYLSIKLDKGARFT 140 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 DWS L QL YA +DV HL L ++L+ GR Sbjct: 141 DWSHRPLDRRQLDYAIADVTHLATLFPMLLKELRDKGRG 179 >gi|85373619|ref|YP_457681.1| ribonuclease D [Erythrobacter litoralis HTCC2594] gi|84786702|gb|ABC62884.1| ribonuclease D [Erythrobacter litoralis HTCC2594] Length = 401 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 1/169 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + LC++Q+ + + +A G P L M +E K+FH G Sbjct: 26 VCIDTEFMRENTYWPELCLIQIGNEEEAAAVDPLADGIDLQPLLDLMCENEDILKVFHAG 85 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ +++ G P+F T+IA + + + Q G + ++ L I K + +DWS Sbjct: 86 GQDVEIVYNLTGKTPFPIFDTQIAM-MAISQSEQIGYANLVESWLNKTIDKGARFTDWSR 144 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 L+D Q++YA DV +L + + KL + GR + + L D A Sbjct: 145 RPLTDRQIEYAIGDVTYLAKIFPKILNKLVKTGRGAWLNAEMDKLADPA 193 >gi|308234516|ref|ZP_07665253.1| ribonuclease D [Atopobium vaginae DSM 15829] gi|328944110|ref|ZP_08241575.1| ribonuclease D [Atopobium vaginae DSM 15829] gi|327492079|gb|EGF23853.1| ribonuclease D [Atopobium vaginae DSM 15829] Length = 376 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 3/140 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D +A+DTE + +LC++QL+ V + ++ + +L + +D+K KIFH Sbjct: 20 DVLAIDTEFMREKTFYPKLCLIQLATRSEIVLVDPLSIP--DLTDLCKLFLDKKITKIFH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ +++ F +PVF T++A+ + Q G + L +++ KA+ +DW Sbjct: 78 ACSQDLELIYDIFSCLPKPVFDTQVAAAFL-GHRFQIGYGPLVDALCHVHLPKAESLTDW 136 Query: 141 SADDLSDEQLQYAASDVVHL 160 + L++EQL+YAA DV +L Sbjct: 137 TRRPLAEEQLEYAADDVRYL 156 >gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct] Length = 399 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQL+ + +D ++ +K L + D+ KI H Sbjct: 48 IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 103 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I I K Q SDW Sbjct: 104 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 162 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178 L+ QL YA DV +L +Q E L Q+L +S+ Sbjct: 163 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 197 >gi|320163487|gb|EFW40386.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864] Length = 467 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 14/175 (8%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPN 65 E +P AA + I +DTE L +LC++QLS G VD + I+ P Sbjct: 149 EAFLPILAAA---ETIGLDTEFLSFPRYTPQLCVLQLSTETDLGIVDALSIS------PE 199 Query: 66 LVGMLVDEKREK--IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 ++ L EK I H D A+L+ G VF T+IA+ G + Sbjct: 200 MLKKLCLRICEKPVIVHSCSSDCAILYDIAGTLPAKVFDTQIAAAFCYPIM-MMGYGQLV 258 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + L + + K+ +DWS L +++ YA SDVVHLHA+R + ++ LGR++ Sbjct: 259 ETLFEVQVDKSLTLTDWSLRPLKKDEVAYAISDVVHLHAIRDKLNARIAELGRTE 313 >gi|94500848|ref|ZP_01307374.1| ribonuclease D [Oceanobacter sp. RED65] gi|94426967|gb|EAT11949.1| ribonuclease D [Oceanobacter sp. RED65] Length = 382 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 9/175 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPN------LVGMLVDEK 74 IA+D+E + + +L ++Q++ G T VD +RI + P L+ +L ++ Sbjct: 23 IALDSEFMRVDTFYPKLALIQINDGSETYLVDPVRINRAHRGEPREEVWGPLIEVLSNQN 82 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+ H D + GV P+ T+ A+ + + G + +K+LL I++ K Sbjct: 83 VVKVLHSPSEDFDAFYSNLGVVPSPIIDTQWAAAMA-SIDGIMGYQKLVKQLLDIDLEKG 141 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 SDW L+DEQ+ YAA DV HL + + +L GR C +++ Sbjct: 142 ATRSDWLQRPLTDEQIHYAADDVEHLLEITKRLETQLVTQGRWTWLLEDCERMVE 196 >gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1] gi|295313032|ref|ZP_06803730.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1] gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica FTNF002-00] Length = 363 Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQL+ + +D ++ +K L + D+ KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I I K Q SDW Sbjct: 78 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178 L+ QL YA DV +L +Q E L Q+L +S+ Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171 >gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4] gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198] gi|224456967|ref|ZP_03665440.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987] gi|254370381|ref|ZP_04986386.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987] gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4] gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198] gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp. tularensis FSC033] gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987] gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598] Length = 364 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQL+ + +D ++ +K L + D+ KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I I K Q SDW Sbjct: 78 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178 L+ QL YA DV +L +Q E L Q+L +S+ Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171 >gi|315634066|ref|ZP_07889355.1| ribonuclease D [Aggregatibacter segnis ATCC 33393] gi|315477316|gb|EFU68059.1| ribonuclease D [Aggregatibacter segnis ATCC 33393] Length = 385 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR A+A+DTE + + +L ++QL GD V +I Q +P + +L DE Sbjct: 30 ARTQSAVALDTEFVRVRTLHPKLGLIQLYAGD-EVALIDPTMIQDFSP-FIALLADESVL 87 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + F +P+ T++ + + G ++ I I K Sbjct: 88 KVLHACGEDLEVFQHYFQQLPQPMCDTQVMANFL-GFAGSAGFATLVQHYFHIEIDKGAS 146 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS+ QL+YAA+DV +L L +Q +L + + C FL+ + Sbjct: 147 RTDWLARPLSEIQLRYAAADVWYLLPLYVQMQTQLAQTEWQSAVKNECEFLLHK 200 >gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147] gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147] Length = 364 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQL+ + +D ++ +K L + D+ KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I I K Q SDW Sbjct: 78 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178 L+ QL YA DV +L +Q E L Q+L +S+ Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171 >gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis WY96-3418] gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis WY96-3418] Length = 364 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQL+ + +D ++ +K L + D+ KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I I K Q SDW Sbjct: 78 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178 L+ QL YA DV +L +Q E L Q+L +S+ Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171 >gi|296284765|ref|ZP_06862763.1| ribonuclease D [Citromicrobium bathyomarinum JL354] Length = 391 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 1/157 (0%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC+VQ+ I +A G P L + +E KIFH Sbjct: 24 DFVCVDTEFMRENTYWPELCLVQIGDEHEAAAIDPLADGIDLKPLLDLLTENEDVLKIFH 83 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 G D+ + + G P+F T+IA + + + Q G + ++ L I K + +DW Sbjct: 84 AGSQDVEIFYNLTGKTPHPIFDTQIAM-MAISQSEQIGYANLVEHWLDKTIDKGARFTDW 142 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 S L+D QL+YA DV +L + + +KL + R Sbjct: 143 SRRPLTDRQLEYAIGDVTYLAKIFPRILKKLMKTDRG 179 >gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS] gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18] gi|167009819|ref|ZP_02274750.1| ribonuclease III [Francisella tularensis subsp. holarctica FSC200] gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257] gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS] gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18] gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257] Length = 364 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQL+ + +D ++ +K L + D+ KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I I K Q SDW Sbjct: 78 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178 L+ QL YA DV +L +Q E L Q+L +S+ Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171 >gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548] gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548] Length = 364 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQL+ + +D ++ +K L + D+ KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDIIKIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I I K Q SDW Sbjct: 78 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178 L+ QL YA DV +L +Q E L Q+L +S+ Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171 >gi|255261512|ref|ZP_05340854.1| ribonuclease D [Thalassiobium sp. R2A62] gi|255103847|gb|EET46521.1| ribonuclease D [Thalassiobium sp. R2A62] Length = 385 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKIF 79 + VDTE L +LC++QL+ PG+G + + + + + +L + D K+F Sbjct: 23 VTVDTEFLRERTYYSKLCLIQLAYPGEGDENAVLVDPLEDGLSLASLYDLFRDPNVVKVF 82 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H R D+ + F G+ P+F T++A+ + + Q G + ++++ + K+ + +D Sbjct: 83 HAARQDLEIFFVDEGIIPAPLFDTQVAAMVC-GFGEQVGYETLVRKIAKAPLDKSSRFTD 141 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 WS LSD Q +YA DV +L + +KL + R+ Sbjct: 142 WSRRPLSDAQKKYALGDVTYLREIYEFLADKLAKNNRA 179 >gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799] gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799] Length = 374 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 4/173 (2%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 ++ D+ A C R DA+A+DTE + +L ++QL G+ T+ +I Q P Sbjct: 12 NDDDLAALCRQCRQKDAVALDTEFVRTRTLHAQLGLIQLYDGE-TLALIDPLEIQDLGP- 69 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L ++ D+ K+ H D+ + Y GV +P+F T++A L G + Sbjct: 70 LWQLIADKNVVKVLHSASEDLEIFAYRGGVIPQPLFDTQVAGVLL-NLGGAMGYGKLIHH 128 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 LG+ + K + +DW LS++QL YAA+DV +L + ++ +GR D Sbjct: 129 YLGLELDKGEARTDWLKRPLSEKQLTYAAADVYYLLQVYRMMRPAIEEMGRLD 181 >gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549] gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549] Length = 364 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQL+ + +D ++ +K L + D+ KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDIIKIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I I K Q SDW Sbjct: 78 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178 L+ QL YA DV +L +Q E L Q+L +S+ Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171 >gi|190570587|ref|YP_001974945.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356859|emb|CAQ54230.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 394 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 3/165 (1%) Query: 14 ECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A+ IAVDTE + + RL ++Q+S G+ + I+ + + + ++++ Sbjct: 15 ELMAKDPKFIAVDTEFIRNNLTYYPRLSLIQISYGEKSF-IVDVLVPGIDLSLIKKIMLN 73 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + K+FH R DI L P+F T++A+ Y + G +++ G+ + Sbjct: 74 REITKVFHSCRQDIESLLTVLKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGVALD 133 Query: 133 KAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K + ++SDW LS++QL YA +DV+HL+ L KL+ R Sbjct: 134 KIKAKNSDWLKRPLSEDQLDYAVNDVIHLYDLHQILCNKLEENNR 178 >gi|294677027|ref|YP_003577642.1| ribonuclease D [Rhodobacter capsulatus SB 1003] gi|294475847|gb|ADE85235.1| ribonuclease D-2 [Rhodobacter capsulatus SB 1003] Length = 384 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 3/162 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG-DGTVDIIRIAAGQKNAPNLVGMLVDEK 74 A+ + VDTE L +LC+VQ++ PG +G ++ + L + + Sbjct: 17 AKAAPYVTVDTEFLRERTYWSKLCLVQMALPGKEGEAVLVDPLVEGLSLEPLYDLFRHQA 76 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+FH R D+ + F GV P+F T++A+ + + Q G + +K++ ++ K Sbjct: 77 TVKVFHAARQDLEIFFTEAGVFPLPLFDTQVAAMVC-GFGEQVGYETLVKKIAKQSLDKT 135 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + +DWS L+D Q YA +DV HL + +++L++ GR Sbjct: 136 SRFTDWSRRPLTDAQKAYALADVTHLRVIYEFLSKELRKSGR 177 >gi|312172621|emb|CBX80877.1| Ribonuclease D [Erwinia amylovora ATCC BAA-2158] Length = 369 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR V A+A+DTE + RL ++QL G+ T+ +I P +L+D++ Sbjct: 15 ARQVPALALDTEFVRTRTYYPRLGLIQLYDGE-TICLIDPLPITDWTP-FRDLLLDQQVI 72 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + FGV +P+ T+I + + + G ++ GI + K++ Sbjct: 73 KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS-CGFATIVESFTGIVLDKSES 131 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q +YAA+DV +L + + + + G+ A C L R Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAALDECRLLCQR 185 >gi|260576346|ref|ZP_05844337.1| ribonuclease D [Rhodobacter sp. SW2] gi|259021417|gb|EEW24722.1| ribonuclease D [Rhodobacter sp. SW2] Length = 385 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 4/179 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG--TVDIIRIAAGQKNAPNLVGMLVD 72 AA+ + +DTE L +LC++Q++ PG V + I + + L + Sbjct: 16 AAKREPYVTIDTEFLRERTYWSKLCLIQMALPGKTGRAVLVDPIEGPEMSLEPLYDLFRH 75 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + K+FH R D+ + F P+F T++A+ + Y Q G + +K++ N+ Sbjct: 76 QATVKVFHAARQDLEIFFVEGNSFPEPLFDTQVAA-MVCGYGEQVGYETLVKKIAKENLD 134 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K + +DWS LS+ Q YA +DV HL + ++ + GR + L D A Sbjct: 135 KTSRFTDWSRRPLSEAQSDYALADVTHLRVVYESLAAQIAKSGRQKWVEEELSILTDPA 193 >gi|292488477|ref|YP_003531361.1| ribonuclease D [Erwinia amylovora CFBP1430] gi|291553908|emb|CBA20953.1| Ribonuclease D [Erwinia amylovora CFBP1430] Length = 369 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR V A+A+DTE + RL ++QL G+ T+ +I P +L+D++ Sbjct: 15 ARQVPALALDTEFVRTRTYYPRLGLIQLYDGE-TICLIDPLPITDWTP-FRDLLLDQQVI 72 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + FGV +P+ T+I + + + G ++ GI + K++ Sbjct: 73 KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS-CGFATIVESFTGIVLDKSES 131 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q +YAA+DV +L + + + + G+ A C L R Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAALDECRLLCQR 185 >gi|291617685|ref|YP_003520427.1| Rnd [Pantoea ananatis LMG 20103] gi|291152715|gb|ADD77299.1| Rnd [Pantoea ananatis LMG 20103] Length = 373 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 4/184 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR A+A+DTE + +L ++QL G+ V I + ++ + +L D + Sbjct: 19 ARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPV--RDWSPFIELLTDTRVT 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + F V +P+ T+I + + + G + + + K++ Sbjct: 77 KFLHAGGEDLEVFLHRFAVLPQPMIDTQILAAFSGQPLS-WGFASMVAHFTQVELDKSEA 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 +DW A L++ Q QYAA+DV +L + Q +++++ G A S C L R LD L Sbjct: 136 RTDWLARPLTERQCQYAAADVHYLLPIAHQLMQQVEQAGNMAAALSECENLCQR-RLDSL 194 Query: 197 GWEN 200 E+ Sbjct: 195 APED 198 >gi|292899665|ref|YP_003539034.1| ribonuclease D [Erwinia amylovora ATCC 49946] gi|291199513|emb|CBJ46630.1| ribonuclease D [Erwinia amylovora ATCC 49946] Length = 373 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR V A+A+DTE + RL ++QL G+ T+ +I P +L+D++ Sbjct: 19 ARQVPALALDTEFVRTRTYYPRLGLIQLYDGE-TICLIDPLPITDWTP-FRDLLLDQQVI 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + FGV +P+ T+I + + + G ++ GI + K++ Sbjct: 77 KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS-CGFATIVESFTGIVLDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q +YAA+DV +L + + + + G+ A C L R Sbjct: 136 RTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAALDECRLLCQR 189 >gi|261821503|ref|YP_003259609.1| ribonuclease D [Pectobacterium wasabiae WPP163] gi|261605516|gb|ACX88002.1| ribonuclease D [Pectobacterium wasabiae WPP163] Length = 374 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 6/180 (3%) Query: 15 CA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 CA A+ +A+DTE + +L ++QL G+ + +I AP +L DE Sbjct: 16 CAQAQRFPQVALDTEFVRTRTYYPQLGLIQLYDGE-QLSLIDPLTITDWAP-FQALLRDE 73 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINIS 132 + K H G D+ V TFG P T+I A+ L + + +G + + +G+ + Sbjct: 74 QVTKFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPLS--YGFAALVADYMGVTLD 131 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 K++ +DW A LS++Q YAA+DV +L + +Q + G + A C L R + Sbjct: 132 KSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVTDTEAAGWMNAALDECLLLCQRKQ 191 >gi|329898076|ref|ZP_08272286.1| Ribonuclease D [gamma proteobacterium IMCC3088] gi|328920975|gb|EGG28399.1| Ribonuclease D [gamma proteobacterium IMCC3088] Length = 373 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 3/155 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+ +DTE + + +VQL+ G G + ++ A +A L +L E+ K+ H Sbjct: 27 AVVLDTEFVRERTYYPKPALVQLA-GAGHISLVDPVA-VTDASALSSLLESERTLKVVHS 84 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 G D+ V G ++ F T++A+ L Y G ++ ++ LG + K + SDW Sbjct: 85 GSEDLEVFQAWLGCPIKGWFDTQVAAALL-GYGYAIGYRNIVETFLGEELDKGETRSDWL 143 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LSD QLQYA +DV++L + + ++ + LGR Sbjct: 144 QRPLSDSQLQYAIADVLYLEPVFERLYQEAEALGR 178 >gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469] gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469] Length = 379 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 11/164 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 A+ +AVDTE L +LC+VQ+S G +D + I + L +L + + Sbjct: 19 AKTSHILAVDTEFLREKTYFPKLCLVQVSTGSEIAAIDPLLI----DDLTPLKELLENPE 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--TRTYTNQHGLKDNLKELLGINIS 132 KI H D+ VL PVF T++A+ R + GL +N + ++ Sbjct: 75 IVKILHACSQDLEVLLEKMDCACAPVFDTQVAAAFLGMRQQVSYAGLVENFA---NVKLA 131 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 KA+ +DWS L EQL YA DV +L A+ Q EKL +L R Sbjct: 132 KAESLTDWSKRPLDKEQLVYAEDDVRYLPAIYNQMVEKLIKLDR 175 >gi|303232226|ref|ZP_07318925.1| ribonuclease D [Atopobium vaginae PB189-T1-4] gi|302481636|gb|EFL44697.1| ribonuclease D [Atopobium vaginae PB189-T1-4] Length = 437 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 3/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + +LC++Q++ + + +A + +L +L D+ K+F Sbjct: 83 VAIDTEFIREKTYYPQLCLIQMATHTQSAVVDPLACS--SLCDLACLLEDKSIIKVFFAC 140 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI VL+ GV + VF ++A+ Y Q G ++ ++G+++ K Q +DWS Sbjct: 141 SQDIEVLYDALGVVPKNVFDAQLAAAFL-GYRYQLGYGALVEAMVGVHLPKTQALTDWSL 199 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L++EQL+YAA DV++ + +L R R Sbjct: 200 RPLTEEQLKYAADDVIYQPQMYTLLVRELTRTNR 233 >gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1] Length = 364 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 11/153 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQL+ + +D ++ +K L + D+ KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I I K Q SDW Sbjct: 78 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L+ QL YA DV +L +Q E LQ+ Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQ 165 >gi|28199772|ref|NP_780086.1| ribonuclease D [Xylella fastidiosa Temecula1] gi|182682522|ref|YP_001830682.1| ribonuclease D [Xylella fastidiosa M23] gi|28057893|gb|AAO29735.1| ribonuclease D [Xylella fastidiosa Temecula1] gi|182632632|gb|ACB93408.1| ribonuclease D [Xylella fastidiosa M23] Length = 362 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 3/187 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D A R I +DTE + L +VQ++ GD + + + G +A Sbjct: 5 IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIGDEILLVDPLVPGMTDALG 64 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L KI H D+ Y GV RP+F T+I + LT G + + + Sbjct: 65 L--WLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGM-GYQKLVAK 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + + K + SDW L+ QL YAA+DV +L AL TE+L + RS C Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181 Query: 186 FLMDRAE 192 L D E Sbjct: 182 RLTDNIE 188 >gi|213019164|ref|ZP_03334971.1| putative ribonuclease D [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995273|gb|EEB55914.1| putative ribonuclease D [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 378 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 9/159 (5%) Query: 23 IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 IAVDTE L PR L ++Q+S G+ + I+ + + + ++++ + K+ Sbjct: 8 IAVDTEFIRNNLTYYPR---LSLIQISYGEKSF-IVDVLVPGIDLSLIKKIMLNREITKV 63 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QS 137 FH R DI L P+F T++A+ Y + G +++ G+ + K + ++ Sbjct: 64 FHSCRQDIESLLTVLKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGVALDKIKAKN 123 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 SDW LS++QL YA +DV+HL+ L KL+ R Sbjct: 124 SDWLKRPLSEDQLDYAVNDVIHLYDLHQILCNKLEENNR 162 >gi|322832720|ref|YP_004212747.1| ribonuclease D [Rahnella sp. Y9602] gi|321167921|gb|ADW73620.1| ribonuclease D [Rahnella sp. Y9602] Length = 373 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 7/170 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IA+DTE + +L ++QL G+ +D + I A Q + +LVD K H Sbjct: 25 IALDTEFVRTRTYYPQLGLIQLFDGERLTLIDPLPITAWQP----FIDLLVDPDVIKFLH 80 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 G D+ V FGV P+ T+I + + + G + E G+ + K++ +DW Sbjct: 81 AGSEDLEVFLNAFGVMPSPLIDTQILAAFSGRPLS-CGFARLVAETTGVELDKSESRTDW 139 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 A LS++Q YAA+DV +L L Q + Q G D A C L R Sbjct: 140 IARPLSEKQCVYAAADVWYLLPLADQLMRETQDAGWMDAALDECLALCRR 189 >gi|311279296|ref|YP_003941527.1| ribonuclease D [Enterobacter cloacae SCF1] gi|308748491|gb|ADO48243.1| ribonuclease D [Enterobacter cloacae SCF1] Length = 386 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 6/182 (3%) Query: 11 IPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + A C AAR AIA+DTE + +L ++Q+ GD V I ++ + + Sbjct: 21 LKAACDAARGAPAIALDTEFVRTRTYYPQLGLIQMYDGDSVVLIDPLSI--TDWTPFRDL 78 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLG 128 L+D K H G D+ V TFGV P+ T+I A+ R + G ++E G Sbjct: 79 LLDGAVTKYLHAGSEDLEVFLNTFGVLPEPLIDTQILAAFCGRPMS--WGFAAMVEEYTG 136 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 I + K++ +DW A L++ Q YAA+DV +L + + + + G A C + Sbjct: 137 IALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMAETEASGWLPAALDECRLMQ 196 Query: 189 DR 190 R Sbjct: 197 QR 198 >gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella tularensis subsp. novicida U112] gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella tularensis subsp. novicida FTE] gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG] gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112] gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE] gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG] Length = 364 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 12/159 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQL+ + +D + +K L + D+ KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLEDLEFKK----LKEIFEDKDIIKIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I I K Q SDW Sbjct: 78 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178 L+ QL YA DV +L +Q E L Q+L +S+ Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171 >gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp. holarctica FSC022] gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp. holarctica FSC022] Length = 364 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQL+ + +D ++ +K L + D+ KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I I K Q SDW Sbjct: 78 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178 L+ QL Y+ DV +L +Q E L Q+L +S+ Sbjct: 137 RNRPLTQNQLNYSIKDVEYL----IQLKEYLQQQLAKSE 171 >gi|222825102|dbj|BAH22259.1| putative ribonuclease D [Wolbachia endosymbiont of Cadra cautella] Length = 394 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 23 IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 IA+DTE + + +L ++Q+S G+ + I+ + + + M++++ K+FH Sbjct: 24 IAIDTEFIRNNLTYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKKMMLNQGIIKVFHS 82 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSSDW 140 R DI L F P+F T++A+ Y + G +++ GI + K + ++SDW Sbjct: 83 CRQDIESLLTVFKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIALDKIKAKNSDW 142 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS++QL YA +DVV+L+ L KL+ R Sbjct: 143 LRRPLSEDQLDYAINDVVYLYDLYQILCNKLEESNR 178 >gi|114704849|ref|ZP_01437757.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506] gi|114539634|gb|EAU42754.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506] Length = 383 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + LC++Q++ D V + +A G P ++ DE K+FH Sbjct: 23 VTVDTEFIRETTFWPELCLIQMASDDTEVLVDPLAKGLSLDP-FFALMADESVVKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ V +P+F T+IA+ + + + L I K+ + +DW Sbjct: 82 RQDLEIVYKLGAVIPKPLFDTQIAAMVC-GFGESIAYDQLVARLTDGRIDKSSRFTDWRH 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV HL + +L+ R L D DL Sbjct: 141 RPLSDKQLTYALADVTHLRDVYKALKAQLEETSRHSWLDEEMAILADPQTYDL 193 >gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989] gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989] Length = 383 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 7/171 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 AIA+DTE + + ++Q++ +G +D + I+ Q A +L + K+ Sbjct: 39 AIALDTEFVRTRTYYPHIGLLQIADENGVYLIDPLAISDTQPMA----DVLQNPAIVKVV 94 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ V Y FGV +F T++A+ Y + G + L+E+ I+I K + SD Sbjct: 95 HACSEDLEVFQYAFGVLPESLFDTQVAAGFA-GYGSSIGYANLLREIKRIDIPKQETRSD 153 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 W LSD QL+YAA DV +L + EKLQ+ R + C ++++ Sbjct: 154 WLQRPLSDAQLRYAALDVEYLLEIYRGLVEKLQQQQRLLWVEADCQRMIEK 204 >gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA] gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA] Length = 381 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 4/165 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A D E + ++++C++Q + G I+ A +P L + + K+FH Sbjct: 30 VACDLEADSMHHYQEKVCLIQFA-VPGYAAIVDPLAAPDISP-LAPLFANAAIRKVFHGA 87 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +DI L FG+ V +F T IA +L + GL L++ G+ + K Q +DWS Sbjct: 88 DYDIRSLHRDFGIEVNNLFDTMIACQLL--GEREFGLAAQLRKRFGVELDKQYQRADWSR 145 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 L+ ++YA D L L Q +L+ GR C L Sbjct: 146 RPLTVGMIEYAVKDTTLLIELYRQLVAELEEKGRRGWVEEECELL 190 >gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5] gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5] Length = 574 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 12/152 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTET G DR+ +VQ+ + T +I + Q P + L++E R + H Sbjct: 25 LYLDTETTG-----DRIRLVQIGDEENTY-VIDLYEIQDIEP--LRKLINE-RGIVGHNL 75 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +FD+ L Y +G+ F T IAS L +H L + LLG ++ K+ Q+SDW A Sbjct: 76 KFDLKYL-YRYGIFPSATFDTMIASYLLGY--ERHSLNHIVSNLLGYSMDKSYQTSDWGA 132 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 LSD QL+YAA+DV+ L L + + L L Sbjct: 133 SVLSDAQLKYAANDVIVLRELFPKMRDMLNEL 164 >gi|227111497|ref|ZP_03825153.1| ribonuclease D [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 374 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 5/177 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ + +I AP +L DE+ Sbjct: 19 ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGE-QLSLIDPLTITDWAP-FQALLRDEQVT 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V FG P T+I A+ L + + +G + + +G+ + K++ Sbjct: 77 KFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPLS--YGFAALVADYMGVTLDKSE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A LS++Q YAA+DV +L + +Q + G + A C L R + Sbjct: 135 SRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWMNAALDECLLLCQRKQ 191 >gi|52425412|ref|YP_088549.1| ribonuclease D [Mannheimia succiniciproducens MBEL55E] gi|52307464|gb|AAU37964.1| Rnd protein [Mannheimia succiniciproducens MBEL55E] Length = 380 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 4/177 (2%) Query: 15 CA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 CA A AIA+DTE + + +L ++QL G+ V +I Q +P +L D Sbjct: 27 CARASTKSAIALDTEFVRIRSYYPKLGLIQLYDGE-QVSLIDPQEIQDFSP-FKQLLADP 84 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K K+ H D+ V + + P+ T+I + + N GL +K + I K Sbjct: 85 KILKVLHACHEDLEVFQHYYQQLPAPMLDTQIMANFL-GFQNSMGLASLIKHYFNLEIDK 143 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS+ QL YAA+DV +L L + L++ CN L+++ Sbjct: 144 GASRTDWLARPLSNRQLAYAAADVWYLLPLYCKMQNALEQTRWQSAVEFDCNLLLEK 200 >gi|296446899|ref|ZP_06888835.1| ribonuclease D [Methylosinus trichosporium OB3b] gi|296255574|gb|EFH02665.1| ribonuclease D [Methylosinus trichosporium OB3b] Length = 388 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 87/171 (50%), Gaps = 5/171 (2%) Query: 10 DIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 D+ A CA +R+ + VDTE L ++C++QL+ + + +A G +P Sbjct: 9 DLAAACARLSRH-PFVTVDTEFLRETTFWPKVCVIQLASPEEAFAVDTLAEGLDLSP-FF 66 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 ++ D K+FH R D+ +++ + P+F T++A+ + + +Q + +K + Sbjct: 67 ELMADASVVKVFHAARQDLEIIWRLARLIPTPLFDTQVAA-MVCGFGDQASYVELVKAIA 125 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 ++ K+ + +DWS LS Q+ YA +DV HL + ++L+R R D Sbjct: 126 KESLDKSSRFTDWSKRPLSVAQIDYAIADVTHLRQIYTHLRQRLERSNRLD 176 >gi|254512186|ref|ZP_05124253.1| ribonuclease D [Rhodobacteraceae bacterium KLH11] gi|221535897|gb|EEE38885.1| ribonuclease D [Rhodobacteraceae bacterium KLH11] Length = 385 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 7/165 (4%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG---TVDIIRIAAGQKNAPNLVGMLV 71 AA+Y + VDTE L +LC+VQL+ P +G V + +A G P L + Sbjct: 17 AAQY-PYVTVDTEFLRERTYYSKLCLVQLAVPAEGDDSAVLVDPLAEGMSLDP-LYELFR 74 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 +E K+FH R D+ + + GV P+F T++A+ + + Q G + ++++ + Sbjct: 75 NESVVKVFHAARQDLEIFWVDAGVFPTPLFDTQVAAMVC-GFGEQVGYETLVRKICKEGV 133 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K + +DWS L++ Q YA +DV HL + +L++ R Sbjct: 134 DKTSRFTDWSRRPLTEAQKSYALADVTHLRKIYEYLAGELKKTKR 178 >gi|146312020|ref|YP_001177094.1| ribonuclease D [Enterobacter sp. 638] gi|145318896|gb|ABP61043.1| ribonuclease D [Enterobacter sp. 638] Length = 384 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 3/173 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R AIA+DTE + +L ++Q+ G I + G + + +L++ K Sbjct: 29 RDFPAIALDTEFVRTRTYYPQLGLIQMYDGKNVSLIDPL--GITDWSPMRELLLNTAITK 86 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 H G D+ V TFG+ P+ T+I + + + G ++E GI + K++ Sbjct: 87 YLHAGSEDLEVFLNTFGIMPEPLIDTQILAAFSGRPLS-WGFAAMVEEYTGIALDKSESR 145 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L++ QL YAA+DV +L + Q ++ + G D A + C R Sbjct: 146 TDWLARPLTERQLDYAAADVFYLLPIAGQLMKEAEAAGWLDAALNECRMTQQR 198 >gi|89054329|ref|YP_509780.1| ribonuclease D [Jannaschia sp. CCS1] gi|88863878|gb|ABD54755.1| ribonuclease D [Jannaschia sp. CCS1] Length = 386 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 7/173 (4%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI---AAGQKNAP 64 ++ A CA A + VDTE L +LC+VQ++ PG D + I A G P Sbjct: 10 ELAAYCARAATQPYVTVDTEFLRERTYFAQLCLVQVAMPGTDDTDAVLIDPLAEGLSLEP 69 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + + K+FH R D+ + F G+ P+F T++A+ + + +Q G + ++ Sbjct: 70 -LYELFRNVNVVKVFHAARQDLEIFFVEGGLVPTPLFDTQVAA-MVCGFGDQVGYETLVR 127 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + N+ K+ + +DWS LSD Q YA +DV +L + + +L R R+ Sbjct: 128 RIAKANLDKSSRFTDWSRRPLSDAQKVYALADVTYLREIYEYLSAELARTDRT 180 >gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7] gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7] Length = 396 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 3/156 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IA+DTE + RLC+VQ++ D I IA + L +L D K+ H Sbjct: 36 IALDTEFVREKTYYPRLCLVQVATPDALACIDPIAL--PDLGPLAALLHDPAVTKVVHAA 93 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ +L + G PVF T++A L + +Q G ++ L + + K +DWS Sbjct: 94 HQDMEILLQSTGRVPTPVFDTQVAVSLL-GHGDQIGYARMVQIYLDLELDKGHTRTDWSQ 152 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L QL+YAA DV HL + + L+ GR D Sbjct: 153 RPLETAQLRYAADDVRHLARVYPMILKDLEEKGRLD 188 >gi|88607542|ref|YP_504762.1| putative ribonuclease D [Anaplasma phagocytophilum HZ] gi|88598605|gb|ABD44075.1| putative ribonuclease D [Anaplasma phagocytophilum HZ] Length = 381 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 3/145 (2%) Query: 21 DAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +++A+DTE L +LC++Q++ + I +A G P L + + + K+F Sbjct: 22 ESVAIDTEFLRSFNDYYPKLCLLQIAYENKQCVIDALAEGIDLTP-LQEIFDNTQIFKVF 80 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSS 138 H R D+ L F RP+F T+IA+ L + N G +++ LG+ ++K + Sbjct: 81 HDCRQDLDALSLLFESLPRPIFDTQIAAMLCEYHENSVGYSKLVEQFLGVKLNKMPFKRV 140 Query: 139 DWSADDLSDEQLQYAASDVVHLHAL 163 DWS L++ +++YA DV++L+ L Sbjct: 141 DWSKRPLTESEVRYALDDVIYLYKL 165 >gi|84393455|ref|ZP_00992211.1| ribonuclease D [Vibrio splendidus 12B01] gi|84375883|gb|EAP92774.1| ribonuclease D [Vibrio splendidus 12B01] Length = 313 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 11/163 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + +L ++QL G+ T+ +I A + P VG+L D Sbjct: 44 AREADVVMLDTEFVRTRTYYPQLGLIQLFDGE-TLSLIDPIALDEMTP-FVGLLKDTSVL 101 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132 K+ H D+ V FG P+ T+I + HGL + E +G+++ Sbjct: 102 KVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-----GHGLSTGFAALVSEFVGVDLD 156 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 K++ +DW A LS +QL YAA+DV +L + + EK+ G Sbjct: 157 KSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAG 199 >gi|218710187|ref|YP_002417808.1| Ribonuclease D [Vibrio splendidus LGP32] gi|218323206|emb|CAV19383.1| Ribonuclease D [Vibrio splendidus LGP32] Length = 397 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + +L ++QL G+ T+ +I A + P VG+L D Sbjct: 44 AREADVVMLDTEFVRTRTYYPQLGLIQLFDGE-TLSLIDPIALDEMTP-FVGLLKDTSVL 101 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132 K+ H D+ V FG P+ T+I + HGL + E +G+++ Sbjct: 102 KVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-----GHGLSTGFAALVSEFVGVDLD 156 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 K++ +DW A LS +QL YAA+DV +L + + EK+ G + A Sbjct: 157 KSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAA 204 >gi|241668633|ref|ZP_04756211.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 364 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 8/180 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHY 81 IAVDTE + LC+VQ++ + +I I + + L + D +KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQIATEN---EIFLIDTLEDLDFSKLKDIFEDTNIQKIIHS 78 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 DI ++ F V +F T++A+ T + Q LK LK++L I + K Q SDW Sbjct: 79 ATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQS-QISLKALLKDILDIEMEKESQFSDWR 137 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201 LS +Q YA DV HL ++ K L ++D L+D + + EN+ Sbjct: 138 KRPLSQKQFDYALKDVEHLIEIKYHLESK---LNQTDYKQYFYEELLDIQKTEFNTVENI 194 >gi|114797633|ref|YP_760953.1| ribonuclease D [Hyphomonas neptunium ATCC 15444] gi|114737807|gb|ABI75932.1| ribonuclease D [Hyphomonas neptunium ATCC 15444] Length = 388 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 2/174 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE LC++Q S G +I A + + ++ +++ K+FH Sbjct: 26 DFVCVDTEFHRETTYWPELCLIQAS-APGVEGLIDPRAEDLDIRPFLDLIASDRQLKVFH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI + G P+F T++A+ + + + + ++ +L +I K+ Q +DW Sbjct: 85 AARQDIEIFNRLIGHPPGPIFDTQVAA-MALGFGDSISYDNLIQRVLRKHIDKSSQFTDW 143 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 LS +QL YA DV HL L+ ++L++ GR + L D A D Sbjct: 144 MRRPLSQKQLVYALGDVTHLRDAYLKMRDELEKAGRMNWVREEMAELEDPATYD 197 >gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 366 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 5/152 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHY 81 IAVDTE + LC+VQ++ + +I I + + L + D +KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQIATEN---EIFLIDTLEDLDFSKLKDIFEDTNIQKIIHS 78 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 DI ++ F V +F T++A+ T + Q LK LK++L I + K Q SDW Sbjct: 79 ATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQS-QISLKALLKDILDIEMEKESQFSDWR 137 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 LS +Q YA DV HL ++ KL + Sbjct: 138 KRPLSQKQFDYALKDVKHLIEIKYHLESKLNQ 169 >gi|253688324|ref|YP_003017514.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754902|gb|ACT12978.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 374 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 6/180 (3%) Query: 15 CA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 CA AR +A+DTE + +L ++QL G+ + +I AP +L DE Sbjct: 16 CAQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGE-QLSLIDPLTITDWAP-FQALLRDE 73 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINIS 132 + K H G D+ V FG P T+I A+ L + + +G + + +G+ + Sbjct: 74 QVTKFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPLS--YGFAALVADYMGVTLD 131 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 K++ +DW A LS++Q YAA+DV +L + Q + G + A C L R + Sbjct: 132 KSESRTDWLARPLSEKQCDYAAADVFYLLPMAAQLVADTEAAGWMNAALDECLLLCQRKQ 191 >gi|329296338|ref|ZP_08253674.1| ribonuclease D [Plautia stali symbiont] Length = 373 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 5/191 (2%) Query: 7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 H + A C AR A+A+DTE + +L ++QL G+ V I + AP Sbjct: 8 HNDQLAAVCQQARQHRAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLTISDW-AP- 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 + +L D + K H G D+ V + FG P+ T+I + + G + Sbjct: 66 FIALLQDRQLTKFLHAGGEDLEVFLHRFGCLPEPMIDTQILAAFAGQPLS-WGFAAMVNH 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 I + K++ +DW A L++ Q QYAA+DV +L + Q + + G A S C Sbjct: 125 FNQIELDKSEARTDWLARPLTERQCQYAAADVAYLLPIAHQLVAQTEAAGNMAAALSECA 184 Query: 186 FLMDRAELDLL 196 L R LD+L Sbjct: 185 TLCQR-RLDVL 194 >gi|86147639|ref|ZP_01065948.1| ribonuclease D [Vibrio sp. MED222] gi|85834550|gb|EAQ52699.1| ribonuclease D [Vibrio sp. MED222] Length = 397 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + +L ++QL G+ T+ +I A + P VG+L D Sbjct: 44 AREADVVMLDTEFVRTRTYYPQLGLIQLFDGE-TLSLIDPIALDEMTP-FVGLLKDTSVL 101 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132 K+ H D+ V FG P+ T+I + HGL + E +G+++ Sbjct: 102 KVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-----GHGLSTGFAALVSEFVGVDLD 156 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 K++ +DW A LS +QL YAA+DV +L + + EK+ G + A Sbjct: 157 KSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKILEKVMEAGWWEAA 204 >gi|307578800|gb|ADN62769.1| ribonuclease D [Xylella fastidiosa subsp. fastidiosa GB514] Length = 339 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 3/154 (1%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 L +VQ++ GD + + + G +A L L KI H D+ Y GV R Sbjct: 15 LALVQIAIGDEILLVDPLVPGMTDALGL--WLAAPNVIKIMHSASEDLIAFKYACGVLPR 72 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 P+F T+I + LT G + + ++ + + K + SDW L+ QL YAA+DV Sbjct: 73 PLFDTQIGAALTGLGGGM-GYQKLVAKVTNVELGKGETRSDWMHRPLTPAQLDYAANDVR 131 Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +L AL TE+L + RS C L D E Sbjct: 132 YLFALHDTLTERLAEMSRSAWLEEDCTRLTDNIE 165 >gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C] gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C] Length = 294 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 10/143 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+DTE+ R+R+C++QLS D VD I + +G ++ + RE + H Sbjct: 35 LALDTESNSFHVYRERVCLLQLSTRTQDFVVDPISVDV------RPLGEILCDGREVVLH 88 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ L +G R+ +F T IA+R R GL ++ G+ +SKA Q SDW Sbjct: 89 GADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVESHFGVRLSKAFQRSDW 146 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 L+ +QL YAA D L L Sbjct: 147 GRRPLTPDQLAYAALDTHFLLPL 169 >gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21] gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21] Length = 377 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A D E L +++C++Q+S D +D + + AP + + +KIFH Sbjct: 35 LAFDLEADSLHHYTEKVCLIQVSSASEDRLIDPLAPIDVKVLAP----IFANPAIKKIFH 90 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ L+ FG+ V +F T IAS+ ++ GL LK+ G+ + K Q +DW Sbjct: 91 GADYDMRSLYRDFGIEVVNLFDTMIASQFL--GESEFGLAALLKKRFGVELDKRYQKADW 148 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 S S E L YA D L L Q +L++ GR Sbjct: 149 SKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGR 184 >gi|146279098|ref|YP_001169257.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025] gi|145557339|gb|ABP71952.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025] Length = 385 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 4/170 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDG--TVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + +DTE L +LC++Q++ PG V + + A + L + E K+F Sbjct: 23 VTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPVEAPDMSLEPLYDLFRHEPTVKVF 82 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H R D+ + F V P+F T++A+ + + Q G + +K++ + K + +D Sbjct: 83 HAARQDLEIFFVEGRVFPTPLFDTQVAAMVC-GFGEQVGYETLVKKIAREQLDKTSRFTD 141 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 WS LSD Q YA +DV HL + + ++++ GR L D Sbjct: 142 WSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGRQRWVEEELAILTD 191 >gi|295095587|emb|CBK84677.1| ribonuclease D [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 384 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 3/173 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R AIA+DTE + +L ++Q+ G V +I AP + +L+D K Sbjct: 29 REFPAIALDTEFVRTRTYYPQLGLIQMYDGK-HVSLIDPLGITDWAP-MRELLLDTAVTK 86 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 H G D+ V TFG+ +P+ T+I + + + G ++E G+ + K++ Sbjct: 87 YLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFSGRPLS-WGFAAMVEEYTGLTLDKSESR 145 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L+ QL+YAA+DV +L + Q ++ + G A C R Sbjct: 146 TDWLARPLTARQLEYAAADVFYLLPIAGQLMKEAEASGWLSAALDECRMTQQR 198 >gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400] Length = 381 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 4/165 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A D E + ++++C++Q + G I+ A +P L + + K+FH Sbjct: 30 VACDLEADSMHHYQEKVCLIQFA-VPGYAAIVDPLAAPDISP-LAPLFANAAIRKVFHGA 87 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +DI L FG+ V +F T IA +L + GL L++ G+ + K Q +DWS Sbjct: 88 DYDIRSLHRDFGMEVNNLFDTMIACQLL--GEREFGLAAQLRKRFGVELDKQYQRADWSR 145 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 L+ ++YA D L L Q L+ GR C L Sbjct: 146 RPLTPGMIEYAVKDTTLLIELCWQLATDLEAKGRRGWVEEECELL 190 >gi|13476899|ref|NP_108468.1| ribonuclease D [Mesorhizobium loti MAFF303099] gi|14027660|dbj|BAB53929.1| ribonuclease D [Mesorhizobium loti MAFF303099] Length = 383 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 2/174 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ G +I + N ++ +E K+FH Sbjct: 21 DFVTVDTEFIRETTFWPILCLIQMA-APGVTALIDPLSPDINLAPFFRLMANEAVVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++ + + PVF T++A+ + + + ++ + G + K+ + +DW Sbjct: 80 AARQDIEIIVHLGDLVPHPVFDTQVAA-MVCGFGDSVSYDQLVQRITGARLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 LSD+QL YA +DV HL + + +L R R+ + L R D Sbjct: 139 RHRPLSDKQLDYALADVTHLIEVYQHLSAELARENRAHWLNEEMDVLTSRETYD 192 >gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K] gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K] Length = 288 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 10/143 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+DTE+ R+R+C++QLS D VD I + +G ++ + RE + H Sbjct: 31 LALDTESNSFHVYRERVCLLQLSTRAQDFVVDPISVDV------RPLGEILCDGREVVLH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ L +G R+ +F T IA+R R GL ++ G+ +SKA Q SDW Sbjct: 85 GADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVEAHFGVRLSKAFQRSDW 142 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 L+ +QL YAA D L L Sbjct: 143 GRRPLTPDQLAYAALDTHFLLPL 165 >gi|238762951|ref|ZP_04623918.1| Ribonuclease D [Yersinia kristensenii ATCC 33638] gi|238698709|gb|EEP91459.1| Ribonuclease D [Yersinia kristensenii ATCC 33638] Length = 373 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR +A+DTE + +L ++QL G+ +D + I Q +L D Sbjct: 19 ARTYAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQWQP----FRELLQDLN 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F + P+ T++ + + RT + G + E G+ + K Sbjct: 75 VVKYLHAGSEDLEVFLNAFDIMPTPMIDTQVLAAFSGRTLSC--GFAMLVNEFEGVELDK 132 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDECELLCRR 189 >gi|319784197|ref|YP_004143673.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170085|gb|ADV13623.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 383 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 2/174 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ G +I A + ++ +E K+FH Sbjct: 21 DFVTVDTEFIRETTFWPILCLIQMA-APGVTALIDPLAPDIDLKPFFRLMANEAVVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++ + + PVF T++A+ + + + ++ + G + K+ + +DW Sbjct: 80 AARQDIEIIVHLGDLVPHPVFDTQVAAMVC-GFGDSVSYDQLVQRITGARLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 LSD+QL YA +DV HL + + +L+R R+ L R D Sbjct: 139 RHRPLSDKQLDYALADVTHLIEVYQHLSAELERENRAHWLNEEMEVLTSRETYD 192 >gi|56416471|ref|YP_153545.1| ribonuclease D [Anaplasma marginale str. St. Maries] gi|56387703|gb|AAV86290.1| ribonuclease D [Anaplasma marginale str. St. Maries] Length = 401 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 3/145 (2%) Query: 21 DAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +++A+DTE + RLC++Q++ G ++ + + + L + DE K+F Sbjct: 26 ESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLSPLQEIFDDEGIYKVF 84 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSS 138 H R D+ L F RP+F T+ AS L + N G +++ LG+ ++K + Sbjct: 85 HDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRV 144 Query: 139 DWSADDLSDEQLQYAASDVVHLHAL 163 DWS LS+ +++YA DV +LH L Sbjct: 145 DWSHRPLSEGKVRYALDDVTYLHEL 169 >gi|332557401|ref|ZP_08411723.1| ribonuclease D [Rhodobacter sphaeroides WS8N] gi|332275113|gb|EGJ20428.1| ribonuclease D [Rhodobacter sphaeroides WS8N] Length = 385 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 6/193 (3%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG--TVDIIRI 56 M TI E + A C AA+ + +DTE L +LC++Q++ PG V + I Sbjct: 1 MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPI 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + L + E K+FH R D+ + F P+F T++A+ + + Q Sbjct: 60 EGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +K++ + K + +DWS LSD Q YA +DV HL + + ++++ GR Sbjct: 119 VGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGR 178 Query: 177 SDLATSCCNFLMD 189 L D Sbjct: 179 QKWVEEELAILTD 191 >gi|260913969|ref|ZP_05920443.1| ribonuclease D [Pasteurella dagmatis ATCC 43325] gi|260632056|gb|EEX50233.1| ribonuclease D [Pasteurella dagmatis ATCC 43325] Length = 383 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 3/176 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ +A+DTE + + +L ++QL G+ V +I + Q +P + +L ++ Sbjct: 30 AQQKSVVALDTEFVRIRTLYPQLGLIQLYDGE-RVSLIDPLSIQDFSP-FIALLANQNVL 87 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + + P+ T+I + ++ N GL ++ + I K Sbjct: 88 KVLHACSEDLEVFQHYYQQMPTPMIDTQIMASFL-SFPNSTGLATLIQHYFQLEIDKGAS 146 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A LSD+QL YAA+DV +L L + + LQ+ + C L+ + E Sbjct: 147 RTDWLARPLSDKQLVYAAADVWYLLPLYQRMQQDLQQTPWQSAVENDCEMLLAKRE 202 >gi|162452521|ref|YP_001614888.1| hypothetical protein sce4245 [Sorangium cellulosum 'So ce 56'] gi|161163103|emb|CAN94408.1| rnd [Sorangium cellulosum 'So ce 56'] Length = 403 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 76/173 (43%), Gaps = 14/173 (8%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLS--PGDGT----VDIIRIAAGQKNAPNLVGMLVDE 73 DA+AVD E GL R RLC VQL+ GDG VD +R+ AP L +L Sbjct: 25 ADALAVDVEANGLFVYRPRLCTVQLAFREGDGIAVGIVDALRVPV----AP-LARLLGAA 79 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+ H FD A + G + T +A+R+ GL L L + + K Sbjct: 80 GPPKVLHDLTFD-ARMLAEAGAPLGGAHDTSVAARMLGCAAT--GLGALLLSELDVKVDK 136 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 Q DW + D +L+Y A DV HL LR + E+ LG + C + Sbjct: 137 QLQQHDWGRRPIEDAELRYLADDVRHLLPLRARLAERSGALGIDEEIEEECAY 189 >gi|221638369|ref|YP_002524631.1| Ribonuclease D [Rhodobacter sphaeroides KD131] gi|221159150|gb|ACM00130.1| Ribonuclease D [Rhodobacter sphaeroides KD131] Length = 385 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 6/193 (3%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG--TVDIIRI 56 M TI E + A C AA+ + +DTE L +LC++Q++ PG V + I Sbjct: 1 MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPI 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + L + E K+FH R D+ + F P+F T++A+ + + Q Sbjct: 60 EGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +K++ + K + +DWS LSD Q YA +DV HL + + ++++ GR Sbjct: 119 VGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGR 178 Query: 177 SDLATSCCNFLMD 189 L D Sbjct: 179 QKWVEEELAILTD 191 >gi|77462516|ref|YP_352020.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1] gi|126461450|ref|YP_001042564.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029] gi|77386934|gb|ABA78119.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1] gi|126103114|gb|ABN75792.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029] Length = 385 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 6/193 (3%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG--TVDIIRI 56 M TI E + A C AA+ + +DTE L +LC++Q++ PG V + I Sbjct: 1 MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPI 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + L + E K+FH R D+ + F P+F T++A+ + + Q Sbjct: 60 EGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +K++ + K + +DWS LSD Q YA +DV HL + + ++++ GR Sbjct: 119 VGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGR 178 Query: 177 SDLATSCCNFLMD 189 L D Sbjct: 179 QKWVEEELAILTD 191 >gi|254492081|ref|ZP_05105256.1| ribonuclease D [Methylophaga thiooxidans DMS010] gi|224462633|gb|EEF78907.1| ribonuclease D [Methylophaga thiooxydans DMS010] Length = 379 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 7/156 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+DTE +LC++Q++ D VD ++I + L+ + +FH Sbjct: 25 LAIDTEFHREKTYYPQLCLIQVANDDVIACVDPLKI----DDLSPLMDVFYRTDMTLVFH 80 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ +LF + VF T++A+ + Y +Q G + +K+ L +++ KA +DW Sbjct: 81 AARQDLELLFLLRDALPQQVFDTQLAATVL-GYGDQIGYGNLVKQCLNVDLDKAHARTDW 139 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS EQ+ YAA DV +L L Q KL GR Sbjct: 140 RQRPLSPEQIDYAADDVRYLRELYHQLEAKLVDTGR 175 >gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem] gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem] Length = 377 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A D E L +++C++Q+S D +D + + AP + + +KIFH Sbjct: 35 LAFDLEADSLHHYTEKVCLIQVSSTSEDRLIDPLAPIDVKVLAP----IFANPAIKKIFH 90 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ L+ FG+ V +F T IAS+ ++ GL LK+ G+ + K Q +DW Sbjct: 91 GADYDMRSLYRDFGIEVVNLFDTMIASQFL--GESEFGLAALLKKRFGVELDKRYQKADW 148 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 S S E L YA D L L Q +L++ GR Sbjct: 149 SKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGR 184 >gi|222474840|ref|YP_002563255.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida] gi|222418976|gb|ACM48999.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida] Length = 386 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 3/145 (2%) Query: 21 DAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +++A+DTE + RLC++Q++ G ++ + + + L + DE K+F Sbjct: 26 ESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLSPLQEIFDDEGIYKVF 84 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSS 138 H R D+ L F RP+F T+ AS L + N G +++ LG+ ++K + Sbjct: 85 HDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRV 144 Query: 139 DWSADDLSDEQLQYAASDVVHLHAL 163 DWS LS+ +++YA DV +LH L Sbjct: 145 DWSHRPLSEGKVRYALDDVTYLHEL 169 >gi|296101862|ref|YP_003612008.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056321|gb|ADF61059.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 384 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 3/173 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R AIA+DTE + +L ++Q+ G I + G + + +L+D K Sbjct: 29 RDFPAIALDTEFVRTRTYYPQLGLIQMYDGKHVSLIDPL--GITDWTPMRDLLLDTAVTK 86 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 H G D+ V TFG+ +P+ T+I + + + G ++E G+ + K++ Sbjct: 87 YLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFSNRPLS-WGFAAMVEEYTGLTLDKSESR 145 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L++ QL YAA+DV +L + Q ++ + G A C R Sbjct: 146 TDWLARPLTERQLDYAAADVFYLLPIAGQLMKEAEASGWLPAALDECRMTQQR 198 >gi|254994696|ref|ZP_05276886.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi] Length = 386 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 3/145 (2%) Query: 21 DAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +++A+DTE + RLC++Q++ G ++ + + + L + DE K+F Sbjct: 26 ESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLSPLQEIFDDEGIYKVF 84 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSS 138 H R D+ L F RP+F T+ AS L + N G +++ LG+ ++K + Sbjct: 85 HDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRV 144 Query: 139 DWSADDLSDEQLQYAASDVVHLHAL 163 DWS LS+ +++YA DV +LH L Sbjct: 145 DWSHRPLSEGKVRYALDDVTYLHEL 169 >gi|149191139|ref|ZP_01869398.1| ribonuclease D [Vibrio shilonii AK1] gi|148835067|gb|EDL52045.1| ribonuclease D [Vibrio shilonii AK1] Length = 289 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 15/180 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR D + +DTE + + +L ++QL G+ +D + I+ + + +L D Sbjct: 19 ARESDVVMLDTEFVRIRTFYPKLGLIQLYDGEQLSLIDPLTIS----DFTPFIELLQDAS 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK----ELLGIN 130 K+ H D+ V +FG P+ T+I + HGL E LG+ Sbjct: 75 VLKVLHACGEDLEVFVNSFGCMPFPMVDTQIMAAFL-----GHGLSTGFAALVDEYLGVE 129 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + K++ +DW A L+D+QL YAA+DV +L L + +++ D A + LM + Sbjct: 130 LDKSESRADWVARPLTDKQLDYAAADVYYLWPLYFKLFAQVEAKDWWDAAQQESDLLMQK 189 >gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga] gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva] Length = 1786 Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 23/196 (11%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRIAAGQKNAPNLV----------- 67 A+ VD ET GL +++ +VQLS P + +D+ +++ +A ++V Sbjct: 1221 AVGVDIETTGLDHNTNQIRLVQLSVPNQPSLIIDLFKLSTNNPDAESVVPGRNELIKCEW 1280 Query: 68 --GMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRL---TRTYTNQHGLKD 121 + ++ K+FH G+FDI L +G P+F T +AS+L +R + + L Sbjct: 1281 LKKLFKSKETVKVFHNGKFDINFL-RVYGFEFEGPIFDTMVASKLLVASRYISCK--LTH 1337 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + L I + K QQ SDWS L +EQL Y+A D L L + L+ SD+A+ Sbjct: 1338 VSERYLNIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLYVILEHLLKINNLSDIAS 1397 Query: 182 SCCNFLMDRAELDLLG 197 ++ ++++L G Sbjct: 1398 VENKCILATSDMELNG 1413 >gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523] Length = 364 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 11/153 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + LC+VQ++ + +D ++ K L + ++ +KI H Sbjct: 22 IAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLKDLDFSK----LKDIFENKDIQKIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI ++ F V +F T++A+ + Q LK LKE+L I + K Q SDW Sbjct: 78 SATNDIPIIKRFFNCEVNNIFDTQLAAAFL-GFQTQSSLKTLLKEILDIEMEKESQFSDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L+ +QL YA DV +L +Q E LQ+ Sbjct: 137 RNRPLTQKQLNYAIKDVEYL----IQLKEYLQQ 165 >gi|242239440|ref|YP_002987621.1| ribonuclease D [Dickeya dadantii Ech703] gi|242131497|gb|ACS85799.1| ribonuclease D [Dickeya dadantii Ech703] Length = 403 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 9/179 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR + +A+DTE + +L ++QL G+ +D + I Q +L+D Sbjct: 48 ARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLSITVWQP----FCDLLLDPA 103 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISK 133 K H G D+ V FG+ P T+I + L + + +G + + + + + K Sbjct: 104 VTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPLS--YGFAALVADYMQVTLDK 161 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 ++ +DW A LS++Q QYAA+DV +L + ++ E+ G + A C L R + Sbjct: 162 SESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWEAALDECRQLCQRKQ 220 >gi|323137715|ref|ZP_08072791.1| ribonuclease D [Methylocystis sp. ATCC 49242] gi|322397012|gb|EFX99537.1| ribonuclease D [Methylocystis sp. ATCC 49242] Length = 393 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 2/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE L ++C++Q++ + V I ++ G P ++ + K+FH Sbjct: 23 VTVDTEFLRETTFWPKVCVIQIASPEEAVAIDALSEGIDLTP-FFSLMANADVVKVFHAA 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ +++ + P+F T++A+ + + Q + +K + N+ K+ + +DWS Sbjct: 82 RQDLEIIWRLARLIPAPLFDTQVAAMVC-GFGEQASYLELVKAITRANLDKSSRFTDWSR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS Q+ YA +DV HL + ++L+R R Sbjct: 141 RPLSAAQIDYAIADVTHLRDIYTTLRQRLERSNR 174 >gi|283781120|ref|YP_003371875.1| 3'-5' exonuclease [Pirellula staleyi DSM 6068] gi|283439573|gb|ADB18015.1| 3'-5' exonuclease [Pirellula staleyi DSM 6068] Length = 399 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 5/158 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + IA DTE + + LC++Q++ DG + II Q +P +L + RE + Sbjct: 22 AEIIAFDTEFVSEDSYQPELCLIQVA-ADGNLAIIDPLEVQDLSP-FWNLLTEPGRETLV 79 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSS 138 H GR + F G R F +IA+ L + +G + L+G ++ K + + Sbjct: 80 HAGREEFRFCFKGAGRRPHKWFDVQIAAGLIGMEFPASYGTL--AQRLIGKSLPKDETRT 137 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 DW LS QL+YA DV+ L +R KL++LGR Sbjct: 138 DWRRRPLSQRQLEYALLDVLDLEQIRDVLVGKLEKLGR 175 >gi|304391965|ref|ZP_07373907.1| ribonuclease D [Ahrensia sp. R2A130] gi|303296194|gb|EFL90552.1| ribonuclease D [Ahrensia sp. R2A130] Length = 383 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 2/175 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE L LC++Q++ D + +A G P ++ D K+FH Sbjct: 21 DYVTVDTEFLRETTFWPILCLIQIAGPDDECIVDPMADGIDLQP-FFELMADTSVVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ ++++ G+ +P+F T++A+ + Y + + + G I K+ + +DW Sbjct: 80 AARQDVEIVYHLGGLVPKPLFDTQVAAMVC-GYGDSVAYNALVSRITGGVIDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 + L+ +QL YA +DV HL + L++ R + L + DL Sbjct: 139 ARRPLTTKQLDYALADVTHLRDVYQSLKADLEKKNRKHWVDEEMDVLTNPETYDL 193 >gi|71901132|ref|ZP_00683238.1| Ribonuclease D [Xylella fastidiosa Ann-1] gi|71729096|gb|EAO31221.1| Ribonuclease D [Xylella fastidiosa Ann-1] Length = 362 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 3/187 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D A R I +DTE + L +VQ++ D + + + G +A Sbjct: 5 IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L KI H D+ Y GV RP+F T+I + LT G + + + Sbjct: 65 L--WLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGM-GYQKLVTK 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + + K + SDW L+ QL YAA+DV +L AL TE+L + RS C Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181 Query: 186 FLMDRAE 192 L D E Sbjct: 182 RLTDNIE 188 >gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1] gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1] Length = 288 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 10/143 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+DTE+ R+R+C++QLS D VD I + +G ++ + RE + H Sbjct: 31 LALDTESNSFHVYRERVCLLQLSTRAQDFVVDPISVDV------RPLGEILCDGREVVLH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ L +G R+ +F T IA+R R GL ++ G+ +SKA Q SDW Sbjct: 85 GADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVEAHFGVRLSKAFQRSDW 142 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 L+ +QL YA+ D L L Sbjct: 143 GRRPLTPDQLAYASLDTHFLLPL 165 >gi|115372643|ref|ZP_01459950.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1] gi|115370364|gb|EAU69292.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1] Length = 379 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +AVD E + R RLC +Q+ +P D + + A +A L ++ D +R K FH Sbjct: 20 LAVDLEADSMHAFRARLCFLQVATPTD--IFLFDTLAPGVDASLLAPLMADPERTKYFHA 77 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 + D+ L G+RVR +F T A+ L + GL D +E LG+ + K Q SD+S Sbjct: 78 AQGDLQFLAEA-GIRVRGLFDTHRAATLL--GWPKVGLADIARERLGVELPKEHQQSDFS 134 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L E +Y A+DV +L L Q E + G Sbjct: 135 LRPLPPEMREYIANDVRYLCELGRQVREACRTAG 168 >gi|121601718|ref|YP_989156.1| ribonuclease D [Bartonella bacilliformis KC583] gi|120613895|gb|ABM44496.1| ribonuclease D [Bartonella bacilliformis KC583] Length = 391 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 14/165 (8%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R D + VDTE + +LC++QL+ + T I + P +++D+ K Sbjct: 18 RNSDFVTVDTEFIRETTFWPQLCLIQLASPNSTALIDPMVPDIDLQP-FFDLMIDKNIVK 76 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK------ELLGINI 131 +FH R DI ++++ + P+F T+IA + G D++ G ++ Sbjct: 77 VFHAARQDIEIIYHLGRIIPFPLFDTQIAGAIC-------GFGDSISYDQIVYHCTGQHL 129 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K+ + +DWS LS++Q+ YA +DV +L + L ++L+ R Sbjct: 130 DKSSRFTDWSCRPLSEKQILYALADVTYLRDVYLSLKKQLEESKR 174 >gi|254502050|ref|ZP_05114201.1| ribonuclease D [Labrenzia alexandrii DFL-11] gi|222438121|gb|EEE44800.1| ribonuclease D [Labrenzia alexandrii DFL-11] Length = 392 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 2/141 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE L +LC++Q++ + + +A G P ++ D+ K+FH Sbjct: 21 DYVTVDTEFLRETTFWPKLCVIQMAGTEMAFIVDALAEGLDLEP-FFDLMRDDSVTKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++++ G+ P+F T++A+ + + + + ++ G I K+ + +DW Sbjct: 80 AARQDIEIIYHLGGLIPAPLFDTQVAA-MVCGFGDSISYDQLVYKVTGARIDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLH 161 + L+ +QL YA +DV HL Sbjct: 139 ARRPLTAKQLDYALADVTHLR 159 >gi|310823888|ref|YP_003956246.1| ribonuclease d [Stigmatella aurantiaca DW4/3-1] gi|309396960|gb|ADO74419.1| ribonuclease D [Stigmatella aurantiaca DW4/3-1] Length = 389 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +AVD E + R RLC +Q+ +P D + + A +A L ++ D +R K FH Sbjct: 30 LAVDLEADSMHAFRARLCFLQVATPTD--IFLFDTLAPGVDASLLAPLMADPERTKYFHA 87 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 + D+ L G+RVR +F T A+ L + GL D +E LG+ + K Q SD+S Sbjct: 88 AQGDLQFLAEA-GIRVRGLFDTHRAATLL--GWPKVGLADIARERLGVELPKEHQQSDFS 144 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L E +Y A+DV +L L Q E + G Sbjct: 145 LRPLPPEMREYIANDVRYLCELGRQVREACRTAG 178 >gi|288549752|ref|ZP_05968046.2| ribonuclease D [Enterobacter cancerogenus ATCC 35316] gi|288317705|gb|EFC56643.1| ribonuclease D [Enterobacter cancerogenus ATCC 35316] Length = 384 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 3/173 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R AIA+DTE + +L ++Q+ G V +I G + + +L+D K Sbjct: 29 RDFPAIALDTEFVRTRTYYPQLGLIQMYDGK-RVSLID-PLGITDWTPMRDLLLDTAVTK 86 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 H G D+ V TFG+ +P+ T+I + + + G ++E G+ + K++ Sbjct: 87 YLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFSNRPLS-WGFAAMVEEYTGLTLDKSESR 145 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L+ QL+YAA+DV +L + Q ++ + G A C R Sbjct: 146 TDWLARPLTARQLEYAAADVFYLLPIAGQLMKESEASGWLSAALDECRMAQQR 198 >gi|315180685|gb|ADT87599.1| ribonuclease D [Vibrio furnissii NCTC 11218] Length = 371 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 3/159 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + +L ++QL G+ + +I A + P V +L D Sbjct: 19 ARDADVVMLDTEFVRTRTFYPQLGLIQLFDGEN-LSLIDPLAMDEMTP-FVELLQDTSVL 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI V +FG P+ T+I + Y G +LL + + K++ Sbjct: 77 KVLHACGEDIEVFKTSFGCVPFPMVDTQIMAAFL-GYGLSTGFAALAHDLLNVELDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +DW A LS +QL+YAA+DV +L + Q EK+ + G Sbjct: 136 RTDWLARPLSQKQLEYAAADVFYLMPMYEQLLEKVTQAG 174 >gi|153823321|ref|ZP_01975988.1| ribonuclease D [Vibrio cholerae B33] gi|126519155|gb|EAZ76378.1| ribonuclease D [Vibrio cholerae B33] Length = 246 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 10 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 67 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 68 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 126 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 127 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAA 179 >gi|260768989|ref|ZP_05877923.1| ribonuclease D [Vibrio furnissii CIP 102972] gi|260617019|gb|EEX42204.1| ribonuclease D [Vibrio furnissii CIP 102972] Length = 397 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 3/164 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + +L ++QL G+ + +I A + P V +L D Sbjct: 45 ARDADVVMLDTEFVRTRTFYPQLGLIQLFDGEN-LSLIDPLAMDEMTP-FVELLQDTSVL 102 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI V +FG P+ T+I + Y G +LL + + K++ Sbjct: 103 KVLHACGEDIEVFKTSFGCVPFPMVDTQIMAAFL-GYGLSTGFAALAHDLLNVELDKSES 161 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +DW A LS +QL+YAA+DV +L + Q EK+ + G + A Sbjct: 162 RTDWLARPLSQKQLEYAAADVFYLMPMYEQLLEKVTQAGWWEAA 205 >gi|15837353|ref|NP_298041.1| ribonuclease D [Xylella fastidiosa 9a5c] gi|9105641|gb|AAF83561.1|AE003916_15 ribonuclease D [Xylella fastidiosa 9a5c] Length = 362 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 3/187 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D A R I +DTE + L +VQ++ D + + + G +A Sbjct: 5 IQHPDTLATWWDRKPTRIGMDTEFIRERTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L KI H D+ Y GV RP+F T+I + LT G + + Sbjct: 65 L--WLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGM-GYQKLVAT 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + + K + SDW L+ QL YAA+DV +L AL TE+L + RS C Sbjct: 122 VTNVALEKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181 Query: 186 FLMDRAE 192 L D E Sbjct: 182 RLTDNIE 188 >gi|227327782|ref|ZP_03831806.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 374 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 5/177 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ + +I AP +L DE+ Sbjct: 19 ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGE-QLSLIDPLTITDWAP-FQALLRDEQVT 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V F P T+I A+ L + + +G + + +G+ + K++ Sbjct: 77 KFLHAGSEDLEVFLNAFETLPTPFIDTQILAAFLGKPLS--YGFAALVADYMGVTLDKSE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A LS++Q YAA+DV +L + +Q + G + A C L R + Sbjct: 135 SRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWMNAALDECLLLCQRKQ 191 >gi|15602571|ref|NP_245643.1| ribonuclease D [Pasteurella multocida subsp. multocida str. Pm70] gi|12720994|gb|AAK02790.1| Rnd [Pasteurella multocida subsp. multocida str. Pm70] Length = 383 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 3/177 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 +A+ IA+DTE + + +L ++QL G+ V +I Q +P + +L + Sbjct: 29 SAQQKAVIALDTEFVRIKTLYPQLGLIQLYDGE-RVSLIDPTTIQDFSP-FIALLANTAV 86 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H D+ V ++F P+ T+I + + N GL ++ + I K Sbjct: 87 LKVLHACSEDLEVFQHSFNQLPTPMLDTQIMANFL-GFPNSTGLATLVQHYFQLEIDKGA 145 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A LSD QL YAA+DV +L L + E L + + A C L+ + E Sbjct: 146 SRTDWLARPLSDNQLIYAAADVWYLLPLYQRMQEALAQTRWQEAAQQDCEALLLKRE 202 >gi|238794476|ref|ZP_04638085.1| Ribonuclease D [Yersinia intermedia ATCC 29909] gi|238726159|gb|EEQ17704.1| Ribonuclease D [Yersinia intermedia ATCC 29909] Length = 373 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR +A+DTE + +L ++QL G+ +D + I Q +L D Sbjct: 19 ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FSELLQDLN 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F P+ T+I + + RT + G + E G+ + K Sbjct: 75 VVKYLHAGSEDLEVFLNAFSRMPTPMIDTQILAAFSGRTLSC--GFAMLVNEFEGVELDK 132 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECQLLCRR 189 >gi|317048442|ref|YP_004116090.1| ribonuclease D [Pantoea sp. At-9b] gi|316950059|gb|ADU69534.1| ribonuclease D [Pantoea sp. At-9b] Length = 373 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 8/186 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEK 74 AR A+A+DTE + +L ++QL G+ V D + I+ AP V +L D + Sbjct: 19 ARQHSAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLNIS---DWAP-FVALLRDTQ 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V + FG P+ T+I + + G + I + K+ Sbjct: 75 VTKFLHAGGEDLEVFLHRFGCLPDPMVDTQILAAFAGQPLSW-GFAAMVMHFNQIELDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 + +DW A L+ Q +YAA+DV +L + Q + + G A S C+ L R LD Sbjct: 134 EARTDWLARPLTARQCEYAAADVAYLLPIAHQLVAQTEAAGHMAAALSECDILCQR-RLD 192 Query: 195 LLGWEN 200 +L E+ Sbjct: 193 VLAPED 198 >gi|153217090|ref|ZP_01950854.1| ribonuclease D [Vibrio cholerae 1587] gi|124113892|gb|EAY32712.1| ribonuclease D [Vibrio cholerae 1587] Length = 381 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 18 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 76 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187 >gi|153801848|ref|ZP_01956434.1| ribonuclease D [Vibrio cholerae MZO-3] gi|153829828|ref|ZP_01982495.1| ribonuclease D [Vibrio cholerae 623-39] gi|229515363|ref|ZP_04404823.1| ribonuclease D [Vibrio cholerae TMA 21] gi|229528995|ref|ZP_04418385.1| ribonuclease D [Vibrio cholerae 12129(1)] gi|124122620|gb|EAY41363.1| ribonuclease D [Vibrio cholerae MZO-3] gi|148874687|gb|EDL72822.1| ribonuclease D [Vibrio cholerae 623-39] gi|229332769|gb|EEN98255.1| ribonuclease D [Vibrio cholerae 12129(1)] gi|229348068|gb|EEO13027.1| ribonuclease D [Vibrio cholerae TMA 21] Length = 381 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 18 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 76 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187 >gi|238756989|ref|ZP_04618177.1| Ribonuclease D [Yersinia aldovae ATCC 35236] gi|238704819|gb|EEP97348.1| Ribonuclease D [Yersinia aldovae ATCC 35236] Length = 373 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR +A+DTE + +L ++QL G+ +D + I Q +L D Sbjct: 19 ARTHTHVALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLPITQWQP----FRALLQDLS 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F P+ T++ + + RT + G + E GI + K Sbjct: 75 VVKYLHAGSEDLEVFLNAFEQMPTPMIDTQVLAAFSGRTLSC--GFAMLVNEFEGIELDK 132 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECELLCRR 189 >gi|183599025|ref|ZP_02960518.1| hypothetical protein PROSTU_02469 [Providencia stuartii ATCC 25827] gi|188021240|gb|EDU59280.1| hypothetical protein PROSTU_02469 [Providencia stuartii ATCC 25827] Length = 374 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A D +A+DTE + +L ++QL G V +I + +P +L ++ Sbjct: 19 ASEADWLALDTEFVRTRTYYPQLGLLQLYDGK-QVSLIDPLSISDFSP-FKALLTNKSLT 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + F P+ T++ + Y G + E LGI + K++ Sbjct: 77 KFLHAGSEDLEVFLHDFECVPEPMVDTQVIAAFL-GYPISCGFASLVSEYLGIELDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q QYA +DV++L L +K++ G A C ++R Sbjct: 136 RTDWLARPLSEKQCQYATADVLYLLPLAKILMQKVEESGYLSAALEECQRTVER 189 >gi|153826834|ref|ZP_01979501.1| ribonuclease D [Vibrio cholerae MZO-2] gi|149739355|gb|EDM53601.1| ribonuclease D [Vibrio cholerae MZO-2] Length = 381 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 18 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 76 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187 >gi|229521896|ref|ZP_04411313.1| ribonuclease D [Vibrio cholerae TM 11079-80] gi|229340821|gb|EEO05826.1| ribonuclease D [Vibrio cholerae TM 11079-80] Length = 381 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 18 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 76 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187 >gi|119775068|ref|YP_927808.1| ribonuclease D [Shewanella amazonensis SB2B] gi|119767568|gb|ABM00139.1| ribonuclease D [Shewanella amazonensis SB2B] Length = 371 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 11/160 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + +DTE + +L ++Q+ G+ +D + I ++ +L + K+ H Sbjct: 26 LVLDTEFVRTRTYYAKLGLIQVYDGNTLALIDPLDI----QDLSGFWALLTNPNILKLVH 81 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISKAQQSS 138 D+ V V+ P+F ++IA+ L+ HGL ++E LG + K + + Sbjct: 82 SCSEDLEVFARYGKVQPTPLFDSQIAAALSGM---GHGLGYAKLVEECLGQTLDKGESRT 138 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 DW L+D QLQYAA+DV +L+ L Q +KL+ LGR D Sbjct: 139 DWIKRPLTDAQLQYAANDVFYLYQLYPQLEQKLKTLGRFD 178 >gi|297579488|ref|ZP_06941416.1| ribonuclease D [Vibrio cholerae RC385] gi|297537082|gb|EFH75915.1| ribonuclease D [Vibrio cholerae RC385] Length = 381 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 18 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 76 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187 >gi|332161539|ref|YP_004298116.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605521|emb|CBY27019.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica Y11] gi|325665769|gb|ADZ42413.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 373 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR +A+DTE + +L ++QL G+ +D + I Q +L D Sbjct: 19 ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEKLSLIDPLPITQWQP----FRELLQDVS 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F + P+ T++ + + R+ + G + EL G+ + K Sbjct: 75 VVKYLHAGSEDLEVFLNAFELMPTPMIDTQVLAAFSGRSLSC--GFAMLVNELEGVELDK 132 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLASKLVEATEAAGRMDAAKDECELLCRR 189 >gi|114768885|ref|ZP_01446511.1| ribonuclease D [alpha proteobacterium HTCC2255] gi|114549802|gb|EAU52683.1| ribonuclease D [alpha proteobacterium HTCC2255] Length = 386 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 8/184 (4%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAPN 65 D +C+A + + +DTE L +LC+VQ++ PG D V I ++ P Sbjct: 12 DFCKKCSA--YEYVTLDTEFLRERTYYSKLCLVQMAHPGNTEDSAVLIDPLSPDLSLDP- 68 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L + + K+FH R D+ + F + P F T++A+ + + Q G + ++ Sbjct: 69 LYELFKNPNVVKVFHAARQDLEIFFIDKKIIPFPFFDTQVAAMVC-GFGEQVGYEKLVRS 127 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + K+ + +DWSA LS++Q+ YA DV +L + + K++ R Sbjct: 128 ICNEGLDKSSRFTDWSARPLSNKQMHYAIGDVTYLREIYEFLSNKIKNNKRQAWVEEELK 187 Query: 186 FLMD 189 LMD Sbjct: 188 ILMD 191 >gi|319948476|ref|ZP_08022610.1| 3'-5' exonuclease [Dietzia cinnamea P4] gi|319437843|gb|EFV92829.1| 3'-5' exonuclease [Dietzia cinnamea P4] Length = 412 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 7/170 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + IAVD E + +R ++QL PG+ + + G+ P L +L +R +F Sbjct: 41 EPIAVDVERASGIRYSERAFLLQLRVPGEPALLVDPETPGRTVGP-LATVL--SQRPLLF 97 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+R + T++A R + L + E LGI ++KA ++D Sbjct: 98 HAASQDLPSL-RELGIRPTALVDTELAGRFL--GIERVNLGAMISEHLGIGLAKAHSAAD 154 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 WS L L YAA DV+ LH L + +L LGR + + C L+D Sbjct: 155 WSRRPLPAAWLDYAAYDVLFLHELADEVLPRLDALGRREWFEAECRHLVD 204 >gi|329122266|ref|ZP_08250854.1| ribonuclease D [Haemophilus aegyptius ATCC 11116] gi|327473827|gb|EGF19244.1| ribonuclease D [Haemophilus aegyptius ATCC 11116] Length = 399 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P V +L + K Sbjct: 46 AQMKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLSNPKVL 103 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R T+ GL ++ L I I K Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNIEIDKGAT 162 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 163 RTNWIKRPLSDIQLQYAAGDVWYLLPL 189 >gi|319898087|ref|YP_004136284.1| ribonuclease d [Haemophilus influenzae F3031] gi|317433593|emb|CBY81977.1| ribonuclease D [Haemophilus influenzae F3031] Length = 380 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P V +L + K Sbjct: 27 AQMKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLSNPKVL 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R T+ GL ++ L I I K Sbjct: 85 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNIEIDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170 >gi|293395838|ref|ZP_06640120.1| ribonuclease D [Serratia odorifera DSM 4582] gi|291421775|gb|EFE95022.1| ribonuclease D [Serratia odorifera DSM 4582] Length = 373 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 7/176 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR IA+DTE + +L ++QL G+ +D + I Q V +L D Sbjct: 19 ARKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQWQP----FVDLLADSA 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V F P+ T+I + T + G + + + + + K+ Sbjct: 75 VVKFLHAGSEDLEVFLNAFNTLPTPLVDTQILAAFTGKPLS-CGFATLVAQYMQVELDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q YAA+DV +L + Q ++ ++ G + A+S C L R Sbjct: 134 ESRTDWLARPLTERQCVYAAADVFYLLPMARQLVQETEQAGWTAAASSECLLLCQR 189 >gi|15641986|ref|NP_231618.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591319|ref|ZP_01678609.1| ribonuclease D [Vibrio cholerae 2740-80] gi|147675516|ref|YP_001217510.1| ribonuclease D [Vibrio cholerae O395] gi|153819311|ref|ZP_01971978.1| ribonuclease D [Vibrio cholerae NCTC 8457] gi|227082111|ref|YP_002810662.1| ribonuclease D [Vibrio cholerae M66-2] gi|229507927|ref|ZP_04397432.1| ribonuclease D [Vibrio cholerae BX 330286] gi|229511838|ref|ZP_04401317.1| ribonuclease D [Vibrio cholerae B33] gi|229518974|ref|ZP_04408417.1| ribonuclease D [Vibrio cholerae RC9] gi|229607472|ref|YP_002878120.1| ribonuclease D [Vibrio cholerae MJ-1236] gi|254849070|ref|ZP_05238420.1| ribonuclease D [Vibrio cholerae MO10] gi|298497984|ref|ZP_07007791.1| ribonuclease D [Vibrio cholerae MAK 757] gi|9656525|gb|AAF95132.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546819|gb|EAX56983.1| ribonuclease D [Vibrio cholerae 2740-80] gi|126510131|gb|EAZ72725.1| ribonuclease D [Vibrio cholerae NCTC 8457] gi|146317399|gb|ABQ21938.1| ribonuclease D [Vibrio cholerae O395] gi|227009999|gb|ACP06211.1| ribonuclease D [Vibrio cholerae M66-2] gi|227013881|gb|ACP10091.1| ribonuclease D [Vibrio cholerae O395] gi|229343663|gb|EEO08638.1| ribonuclease D [Vibrio cholerae RC9] gi|229351803|gb|EEO16744.1| ribonuclease D [Vibrio cholerae B33] gi|229355432|gb|EEO20353.1| ribonuclease D [Vibrio cholerae BX 330286] gi|229370127|gb|ACQ60550.1| ribonuclease D [Vibrio cholerae MJ-1236] gi|254844775|gb|EET23189.1| ribonuclease D [Vibrio cholerae MO10] gi|297542317|gb|EFH78367.1| ribonuclease D [Vibrio cholerae MAK 757] Length = 381 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 18 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 76 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAA 187 >gi|229523996|ref|ZP_04413401.1| ribonuclease D [Vibrio cholerae bv. albensis VL426] gi|229337577|gb|EEO02594.1| ribonuclease D [Vibrio cholerae bv. albensis VL426] Length = 381 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 18 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMLDGEN-LSLIDPTVLDEMTP-FV 75 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 76 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187 >gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] Length = 582 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 14/181 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + +D E GL P R+ ++QL+ G T VD+ + L G + K+ H Sbjct: 30 VGLDIEATGLSPLDARMRLLQLAAGGETFVVDVFEVKDLSPLREALEGGPL-----KVLH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI----NISKAQQ 136 ++D + L G+R+ P+F T +A++L + G +L+ + G + K + Sbjct: 85 NAKYDYSFLLAQHGIRLSPLFDTMLAAQLLD--GGEQGPSYSLEAVAGRYLQETVDKTAR 142 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 DWS +LS EQL+YAA D L L + E L+R G ++ + AE++L Sbjct: 143 REDWS-KELSREQLEYAARDAAILLPLHERLQELLEREGLGPVSRIEFGAVPAIAEMELA 201 Query: 197 G 197 G Sbjct: 202 G 202 >gi|148978262|ref|ZP_01814780.1| ribonuclease D [Vibrionales bacterium SWAT-3] gi|145962563|gb|EDK27840.1| ribonuclease D [Vibrionales bacterium SWAT-3] Length = 372 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 11/178 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + +L ++QL G+ T+ +I A + P VG+L D Sbjct: 19 AREADVVMLDTEFVRTRTYYPQLGLIQLFDGE-TLSLIDPIALDEMTP-FVGLLKDASVL 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132 K+ H D+ V F P+ T+I + HGL + E +G+++ Sbjct: 77 KVLHACGEDLEVFQNAFDCTPTPMVDTQIMAAFL-----GHGLSTGFAALVSEFVGVDLD 131 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K++ +DW A LS +QL YAA+DV +L + + EK+ G + A + + R Sbjct: 132 KSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQQESDLQVAR 189 >gi|77457615|ref|YP_347120.1| ribonuclease D [Pseudomonas fluorescens Pf0-1] gi|77381618|gb|ABA73131.1| putative ribonuclease [Pseudomonas fluorescens Pf0-1] Length = 377 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 21/158 (13%) Query: 23 IAVDTETLGLMPRRDRLCIVQ--LSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKRE 76 +A+DTE + R D + L GDG +D + I A Q L +L + Sbjct: 27 VALDTEFM----RVDTFYPIAGLLQVGDGKRAYLIDPLTINAWQP----LAALLENPAVL 78 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+LGI + K Sbjct: 79 KVLHACSEDLEVLLRLTGSLPAPLFDTQLAA----AYLNLGFSMGYSRLVQEVLGIELPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + SDW LSD Q+ YAA D VHL + +Q KL Sbjct: 135 GETRSDWLQRPLSDTQISYAAEDAVHLAEVFVQLRPKL 172 >gi|57239422|ref|YP_180558.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|58579394|ref|YP_197606.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|57161501|emb|CAH58427.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden] gi|58418020|emb|CAI27224.1| Ribonuclease D [Ehrlichia ruminantium str. Welgevonden] Length = 389 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 3/143 (2%) Query: 23 IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 IAVDTE + RL ++Q++ +G +I + A + L + +++ KIFH Sbjct: 27 IAVDTEFIRNCNEYYPRLSLIQIAWSEGKC-VIDVLADDIDLSVLESIFYNKEIVKIFHD 85 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSSDW 140 + DI L F P+F ++IA+ Y N G + + L +++ K + S+W Sbjct: 86 CKQDIDALLTKFPRIPYPIFDSQIAAMFCAYYDNAVGYSKLVAQFLDVSLDKLTLKRSNW 145 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 LSD+++QYA DVV+L+ L Sbjct: 146 LMRPLSDDKIQYALDDVVYLYEL 168 >gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata] gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata] Length = 1786 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 23/196 (11%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLS-PGDGTV--DIIRIAAGQKNAPNLV----------- 67 A+ VD ET GL +++ +VQLS P +V D+ ++ + N+V Sbjct: 1221 AVGVDIETTGLDHNTNQIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVVPGRNELIKCEW 1280 Query: 68 --GMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRL---TRTYTNQHGLKD 121 + + K+FH G+FDI L +G P+F T +AS+L +R + + L Sbjct: 1281 LKNLFKSKDTVKVFHNGKFDINFL-RVYGFEFEGPIFDTMVASKLLVASRYISCK--LTH 1337 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + L I + K QQ SDWS L +EQL Y+A D L L + L+ +D+A+ Sbjct: 1338 VSERYLNIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLYVILEHLLKINNLADIAS 1397 Query: 182 SCCNFLMDRAELDLLG 197 ++ ++++L G Sbjct: 1398 VENKCILATSDMELNG 1413 >gi|260466883|ref|ZP_05813067.1| ribonuclease D [Mesorhizobium opportunistum WSM2075] gi|259029385|gb|EEW30677.1| ribonuclease D [Mesorhizobium opportunistum WSM2075] Length = 383 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 2/174 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE + LC++Q++ G +I + + ++ +E K+FH Sbjct: 21 DFVTVDTEFIRETTFWPILCLIQMA-APGVTALIDPLSSDIDLRPFFKLMANEAVVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++ + + PVF T++A+ + + + ++ + G + K+ + +DW Sbjct: 80 AARQDIEIIVHLGDLVPHPVFDTQVAAMVC-GFGDSVSYDQLVQRITGARLDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 LSD+QL YA +DV HL + +L R R+ + L R D Sbjct: 139 RHRPLSDKQLDYALADVTHLIEVYQHLNAELARENRAHWLNEEMDVLTSRETYD 192 >gi|16272339|ref|NP_438552.1| ribonuclease D [Haemophilus influenzae Rd KW20] gi|1173094|sp|P44442|RND_HAEIN RecName: Full=Ribonuclease D; Short=RNase D gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd KW20] Length = 399 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P V +L + K Sbjct: 46 AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEH-VSLIDPLAITDFSP-FVALLANPKVL 103 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R T+ GL ++ L + I K Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNVEIDKGAT 162 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 163 RTNWIKRPLSDIQLQYAAGDVWYLLPL 189 >gi|168698136|ref|ZP_02730413.1| ribonuclease D [Gemmata obscuriglobus UQM 2246] Length = 435 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 3/172 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + DTE +G R LC+VQ+S + I G + +L+D KR + H G Sbjct: 35 VGFDTEFVGEDAYRPELCLVQVSTAEQLFVIDPFECGSLD--GFWDLLLDRKRTVVVHAG 92 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + ++ G VF +IA+ L T G + +LL + K + +DW Sbjct: 93 REDVRMCYFQAGSAPPNVFDVQIAAGLV-GLTYPIGYAGLVHDLLRQRMQKGETLTDWRQ 151 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 L+ Q++YA DV +L + TE+L++ R A + RA D Sbjct: 152 RPLTPAQVRYAYDDVRYLLPAHRKLTERLKKYRRLPWAEEEFAAAVKRAVAD 203 >gi|148827593|ref|YP_001292346.1| ribonuclease D [Haemophilus influenzae PittGG] gi|148718835|gb|ABQ99962.1| ribonuclease D [Haemophilus influenzae PittGG] Length = 401 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P V +L + K Sbjct: 46 AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLANPKVL 103 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R T+ GL ++ L I I K Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNIEIDKGAT 162 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 163 LTNWIKRPLSDIQLQYAAGDVWYLLPL 189 >gi|154253761|ref|YP_001414585.1| ribonuclease D [Parvibaculum lavamentivorans DS-1] gi|154157711|gb|ABS64928.1| ribonuclease D [Parvibaculum lavamentivorans DS-1] Length = 427 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 2/167 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + LC++QL+ + + +A AP ++ + K+FH Sbjct: 66 VTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDLDLAP-FYALMKNRNVVKVFHAA 124 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI + + P+F T++A+ + + + G + +++L G ++ K+ + +DWS Sbjct: 125 RQDIEIFCHEGKAIPDPLFDTQVAAMVC-GFGDSVGYETLVRKLAGGSVDKSSRFTDWSR 183 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 LSD+QLQYA +DV +L + ++L R+ L D Sbjct: 184 RPLSDKQLQYAMADVTYLRTIYEVLAKRLTHTKRAHWVAEEMAVLQD 230 >gi|260580546|ref|ZP_05848374.1| ribonuclease D [Haemophilus influenzae RdAW] gi|260092888|gb|EEW76823.1| ribonuclease D [Haemophilus influenzae RdAW] Length = 399 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P V +L + K Sbjct: 46 AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEH-VSLIDPLAITDFSP-FVALLANPKVL 103 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R T+ GL ++ L + I K Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNVEIDKGAT 162 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 163 RTNWIKRPLSDIQLQYAAGDVWYLLPL 189 >gi|255745267|ref|ZP_05419216.1| ribonuclease D [Vibrio cholera CIRS 101] gi|262155992|ref|ZP_06029112.1| ribonuclease D [Vibrio cholerae INDRE 91/1] gi|255737097|gb|EET92493.1| ribonuclease D [Vibrio cholera CIRS 101] gi|262030170|gb|EEY48814.1| ribonuclease D [Vibrio cholerae INDRE 91/1] Length = 373 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 10 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 67 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 68 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 126 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 127 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAA 179 >gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1] gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1] Length = 399 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P V +L + K Sbjct: 46 AQQQSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLANPKVL 103 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R T+ GL ++ L I I K Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNIEIDKGAT 162 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 163 LTNWIKRPLSDIQLQYAAGDVWYLLPL 189 >gi|121729927|ref|ZP_01682350.1| ribonuclease D [Vibrio cholerae V52] gi|121628334|gb|EAX60840.1| ribonuclease D [Vibrio cholerae V52] Length = 350 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 10 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 67 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 68 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 126 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 127 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAA 179 >gi|229846478|ref|ZP_04466586.1| ribonuclease D [Haemophilus influenzae 7P49H1] gi|229810571|gb|EEP46289.1| ribonuclease D [Haemophilus influenzae 7P49H1] Length = 380 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P V +L + K Sbjct: 27 AQQQSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLSNPKVL 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R T+ GL ++ L I I K Sbjct: 85 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFIGLGTS-AGLAKLAQQYLNIEIDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170 >gi|294055851|ref|YP_003549509.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221] gi|293615184|gb|ADE55339.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221] Length = 386 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 2/170 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+ VDTE + L +VQL DG ++I + +P L ++ D KI H Sbjct: 20 AVGVDTEFVWDRTYYPTLGVVQLGYPDGHCELIDAPEIEDWSP-LAELMSDPNVVKILHD 78 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 + D+ +L G + +F T++ + ++ L+D LK LL + ++K + SDW Sbjct: 79 AQQDLTILRRVCGSDPKTIFDTQLTAGFI-GLSSTISLRDILKTLLKVRLAKTETQSDWV 137 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 A L++ Q++YA DV L Q ++ LGR + + + D A Sbjct: 138 ARPLTEAQIKYAEDDVRDSVRLMEQILKRADALGRREWIENEMTYYEDAA 187 >gi|301156355|emb|CBW15826.1| ribonuclease D [Haemophilus parainfluenzae T3T1] Length = 383 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 3/144 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR A+A+DTE + + +L ++QL G+ V +I + +P V +L D+ Sbjct: 27 ARQQSAVALDTEFMRVSTYYPKLGLIQLYDGE-RVSLIDPLSITDFSP-FVELLRDQLVT 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F +P+ T+I +R + N GL + LGI + K Sbjct: 85 KILHACNEDLLVFLQEFDALPQPMMDTQIMARFL-GFANSAGLAKLVLHYLGIEMDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 ++W LS QLQYAA DV +L Sbjct: 144 RTNWLKRPLSPVQLQYAAGDVWYL 167 >gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB] gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB] Length = 295 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 6/164 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTE+ DR+C++Q+S + D I K+ L + + + EK+ H Sbjct: 26 LAVDTESNSFYAYFDRVCLIQISSPER--DYIIDPLSLKDLSVLGRLFENPRIEKVLHAA 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ L F R +F T IA +L Q GL L+ G++++K Q DW Sbjct: 84 SNDVLGLRRDFQFRFNGLFDTAIACKLLGY--KQLGLSKILETHFGVSLNKRWQRYDWGK 141 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 L +QL YA D +L ALR LQ R A +C F Sbjct: 142 RPLVPDQLDYARLDTHYLIALRHMLAADLQ--SRELWAEACEAF 183 >gi|271500522|ref|YP_003333547.1| ribonuclease D [Dickeya dadantii Ech586] gi|270344077|gb|ACZ76842.1| ribonuclease D [Dickeya dadantii Ech586] Length = 373 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 5/188 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I EG + A CA A V +A+DTE + +L ++QL GD I +A N Sbjct: 6 ITTDEG-LSAVCALACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLSLIDPLAI--SN 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L + + K H G D+ V FG P T+I + R +G Sbjct: 63 WEPFRALLQNPQVTKYLHAGSEDLEVFLNAFGCLPSPFIDTQILAAF-RGKPLSYGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + I + K++ +DW A LS++Q QYAA+DV +L + E+ + G + A Sbjct: 122 VADYRQIVLDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARVLVEETRLAGWMEAALD 181 Query: 183 CCNFLMDR 190 C L R Sbjct: 182 ECQLLCQR 189 >gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18] gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18] Length = 377 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 4/154 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A D E L +++C++Q+S I +A + L + + +KIFH Sbjct: 35 LAFDLEADSLHHYTEKVCLIQVSSESENRLIDPLAP--IDVRVLAPIFANPAIKKIFHGA 92 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +D+ L+ FG+ V +F T IAS+ ++ GL LK+ G+ + K Q +DWS Sbjct: 93 DYDMRSLYRDFGIEVVNLFDTMIASQFL--GESEFGLAALLKKRFGVELDKRYQKADWSK 150 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 S E L+YA D L L Q +L GR Sbjct: 151 RPFSQEMLEYAMKDTSLLIELYRQLEAELLAKGR 184 >gi|85059311|ref|YP_455013.1| ribonuclease D [Sodalis glossinidius str. 'morsitans'] gi|84779831|dbj|BAE74608.1| ribonuclease D [Sodalis glossinidius str. 'morsitans'] Length = 380 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 7/170 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +AVDTE + +L ++Q+ G+ +D + I Q + +L DE+ K+ H Sbjct: 26 VAVDTEFVRTCTYYPQLGLIQMFDGEALTLIDPLAITDWQP----FIALLADEQVTKLLH 81 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ V +++FG P+ T++ + T + G + E L + + K + +DW Sbjct: 82 ACSEDLEVFWHSFGQMPVPMIDTQVLAAFTGRALS-CGFAALVAETLDVTLDKTESRTDW 140 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 A LS Q YAA+DV L + + + Q+ G A+ C + R Sbjct: 141 LARPLSKRQCDYAAADVYWLLPMAHKLIAQTQQAGWWSQASQECEAICQR 190 >gi|269959116|ref|YP_003328905.1| ribonuclease D [Anaplasma centrale str. Israel] gi|269848947|gb|ACZ49591.1| ribonuclease D [Anaplasma centrale str. Israel] Length = 389 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 3/145 (2%) Query: 21 DAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +++AVDTE + RLC++Q++ G ++ + + + L + DE K+F Sbjct: 26 ESLAVDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLSPLQEIFDDEGICKVF 84 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSS 138 H R D+ L F +P+F T+ AS L + N G +++ LG+ ++K + Sbjct: 85 HDCRQDLDALSQRFLRLPKPIFDTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRV 144 Query: 139 DWSADDLSDEQLQYAASDVVHLHAL 163 DWS LS+ +++YA DV +LH L Sbjct: 145 DWSHRPLSEGKVRYALDDVTYLHEL 169 >gi|238751610|ref|ZP_04613100.1| Ribonuclease D [Yersinia rohdei ATCC 43380] gi|238710172|gb|EEQ02400.1| Ribonuclease D [Yersinia rohdei ATCC 43380] Length = 394 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR +A+DTE + +L ++QL G+ +D + I Q ++ D Sbjct: 40 ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQWQP----FRELIQDLN 95 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F P+ T++ + + R+ + G + E G+ + K Sbjct: 96 VVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFSGRSLSC--GFAMLVNEFEGVELDK 153 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + E + GR D A CN L R Sbjct: 154 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECNLLCRR 210 >gi|260582345|ref|ZP_05850138.1| ribonuclease D [Haemophilus influenzae NT127] gi|260094713|gb|EEW78608.1| ribonuclease D [Haemophilus influenzae NT127] Length = 380 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G V +I A +P V +L + K Sbjct: 27 AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGKH-VSLIDPLAITDFSP-FVALLANPKVL 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R T+ GL ++ L I I K Sbjct: 85 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNIEIDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170 >gi|71275157|ref|ZP_00651444.1| Ribonuclease D [Xylella fastidiosa Dixon] gi|71163966|gb|EAO13681.1| Ribonuclease D [Xylella fastidiosa Dixon] Length = 362 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 3/187 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D A R I +DTE + L +VQ++ D + + + G +A Sbjct: 5 IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L KI H D+ Y GV RP+F T+I + LT G + + + Sbjct: 65 L--WLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGM-GYQKLVAK 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + + K + SDW L+ QL YAA+DV +L L TE+L + RS C Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCT 181 Query: 186 FLMDRAE 192 L D E Sbjct: 182 RLTDNIE 188 >gi|68248994|ref|YP_248106.1| ribonuclease D [Haemophilus influenzae 86-028NP] gi|68057193|gb|AAX87446.1| ribonuclease D [Haemophilus influenzae 86-028NP] Length = 380 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL D V +I A +P V +L + K Sbjct: 27 AQMKSAVALDTEFMRVSTYFPKLGLIQLY-DDERVSLIDPLAITDFSP-FVALLSNPKVL 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R T+ GL ++ L I I K Sbjct: 85 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNIEIDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170 >gi|82543793|ref|YP_407740.1| ribonuclease D [Shigella boydii Sb227] gi|81245204|gb|ABB65912.1| RNase D [Shigella boydii Sb227] Length = 375 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V FG +P+ T+I S + G ++E G+ + K++ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFCGRPMS-WGFASMVEEYSGVTLDKSE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|187733914|ref|YP_001880596.1| ribonuclease D [Shigella boydii CDC 3083-94] gi|187430906|gb|ACD10180.1| ribonuclease D [Shigella boydii CDC 3083-94] Length = 375 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 4/179 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V FG +P+ T+I S + G ++E G+ + K++ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFCGRPMS-WGFASMVEEYSGVTLDKSE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL-MDRAEL 193 +DW A L++ Q +YAA+DV +L + + + + G A C + M R E+ Sbjct: 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEV 193 >gi|157145434|ref|YP_001452753.1| ribonuclease D [Citrobacter koseri ATCC BAA-895] gi|157082639|gb|ABV12317.1| hypothetical protein CKO_01177 [Citrobacter koseri ATCC BAA-895] Length = 371 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHVALID--PHGITDWSPLRAVLRDTAI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V TFG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNTFGELPQPLIDTQILAAFCGRPLS--WGFAAMVEEFTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITKKLMVETEASGWLPAALDECRLMQQR 185 >gi|170731148|ref|YP_001776581.1| ribonuclease D [Xylella fastidiosa M12] gi|167965941|gb|ACA12951.1| ribonuclease D [Xylella fastidiosa M12] Length = 362 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 3/187 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D A R I +DTE + L +VQ++ D + + + G +A Sbjct: 5 IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L KI H D+ Y GV RP+F T+I + LT G + + + Sbjct: 65 L--WLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGM-GYQKLVAK 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + + K + SDW L+ QL YAA+DV +L L TE+L + RS C Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCT 181 Query: 186 FLMDRAE 192 L D E Sbjct: 182 RLTDNIE 188 >gi|320183816|gb|EFW58649.1| Ribonuclease D [Shigella flexneri CDC 796-83] gi|332096395|gb|EGJ01392.1| ribonuclease D [Shigella boydii 3594-74] Length = 371 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V FG +P+ T+I S + G ++E G+ + K++ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFCGRPMS-WGFASMVEEYSGVTLDKSE 130 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 131 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|123442616|ref|YP_001006593.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089577|emb|CAL12426.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 373 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR +A+DTE + +L ++QL G+ +D + I Q +L D Sbjct: 19 ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQWQP----FRELLQDLN 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F + P+ T++ + + R+ + G + E G+ + K Sbjct: 75 VVKYLHAGSEDLEVFLNAFELMPTPMIDTQVLAAFSGRSLSC--GFAMLVNEFEGVELDK 132 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDECELLCRR 189 >gi|320173702|gb|EFW48889.1| Ribonuclease D [Shigella dysenteriae CDC 74-1112] Length = 371 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPAI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V FG +P+ T+I S + G ++E G+ + K++ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFCGRPMS-WGFASMVEEYSGVTLDKSE 130 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 131 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|78224579|ref|YP_386326.1| 3'-5' exonuclease [Geobacter metallireducens GS-15] gi|78195834|gb|ABB33601.1| 3'-5' exonuclease [Geobacter metallireducens GS-15] Length = 382 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 8/167 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PG-DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A D E + ++++C++Q + PG VD + +A AP + + K+FH Sbjct: 30 VACDLEADSMHHYQEKVCLIQFTVPGLAAIVDPLAVADLAPLAP----VFANPSIRKVFH 85 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +DI L FG+ V +F T IA + + GL L++ G+ + K Q +DW Sbjct: 86 GADYDIRSLHRDFGIEVNNLFDTMIACQFL--GEREFGLAAVLRKRFGVELDKQYQRADW 143 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S L+ ++YAA D L L + +L+ GR C L Sbjct: 144 SRRPLTAGMIEYAAKDTTLLIELCGRLEAELREKGRIGWVEEECALL 190 >gi|302335597|ref|YP_003800804.1| ribonuclease D [Olsenella uli DSM 7084] gi|301319437|gb|ADK67924.1| ribonuclease D [Olsenella uli DSM 7084] Length = 376 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 7/151 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+DTE L RLC++Q + D +D I I + L +L DE K+FH Sbjct: 22 LAIDTEFLRERTYFPRLCLIQAATPDESAAIDPILI----DDLSPLARLLTDESITKVFH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ V++ P+F T++A+ + Q G + G+ + KA+ +DW Sbjct: 78 ACSQDLEVIYDALHCVPGPIFDTQLAAAFL-GHRQQIGYGALVDACCGVRLPKAESLTDW 136 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 S L EQL YA DV +L + Q +L Sbjct: 137 SRRPLDAEQLAYAEDDVRYLPGIYDQMMAEL 167 >gi|58617449|ref|YP_196648.1| ribonuclease D [Ehrlichia ruminantium str. Gardel] gi|58417061|emb|CAI28174.1| Ribonuclease D [Ehrlichia ruminantium str. Gardel] Length = 389 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 3/143 (2%) Query: 23 IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 IAVDTE + RL ++Q++ G +I + A + L + +++ KIFH Sbjct: 27 IAVDTEFIRNCNEYYPRLSLIQIAWSKGKC-VIDVLADDIDLSVLESIFYNKEIVKIFHD 85 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSSDW 140 + DI L F P+F ++IA+ Y N G + + L +++ K + S+W Sbjct: 86 CKQDIDALLTKFPRIPYPIFDSQIAAMFCAYYDNAVGYSKLVAQFLDVSLDKLTLKRSNW 145 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 LSD+++QYA DVV+L+ L Sbjct: 146 LMRPLSDDKIQYALDDVVYLYEL 168 >gi|319775680|ref|YP_004138168.1| ribonuclease D [Haemophilus influenzae F3047] gi|317450271|emb|CBY86487.1| ribonuclease D [Haemophilus influenzae F3047] Length = 380 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P V +L + K Sbjct: 27 AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLSNPKVL 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V F RP+ T+I +R T+ GL ++ L I I K Sbjct: 85 KVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNIEIDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170 >gi|261209844|ref|ZP_05924146.1| ribonuclease D [Vibrio sp. RC341] gi|260841142|gb|EEX67662.1| ribonuclease D [Vibrio sp. RC341] Length = 398 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 4/168 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 35 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVMDEMTP-FV 92 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 93 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 151 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G Sbjct: 152 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAG 199 >gi|194468559|ref|ZP_03074543.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358811|ref|ZP_02659348.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194454923|gb|EDX43762.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331760|gb|EDZ18524.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 375 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D + Sbjct: 18 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTEI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189 >gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] Length = 586 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 6/150 (4%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 D++ ++Q+ + T I + + N + L+ E + I H +FD+ L + Sbjct: 43 DKIRLIQIGDEENTFVIDLLKINPEVVKNHIQNLI-ENKGIIGHNLKFDLKFLKTNLNIL 101 Query: 97 VRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 + VF T IAS++ N +H L + K + +++ K Q S W A DLS EQ++YAA Sbjct: 102 PKIVFDTMIASQILAKGDNSQRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSPEQIEYAA 161 Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 D+ ALR F E+ +L + +L Sbjct: 162 KDI---DALRHLFKEEKNQLNQDNLHKKAS 188 >gi|213865181|ref|ZP_03387300.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 200 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 3 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 60 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 61 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 118 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 119 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 174 >gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] Length = 587 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 6/150 (4%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 D++ ++Q+ + T I + + N + L+ E + I H +FD+ L + Sbjct: 44 DKIRLIQIGDEENTFVIDLLKINPEVVKNHIQNLI-ENKGIIGHNLKFDLKFLKTNLNIL 102 Query: 97 VRPVFCTKIASR-LTRTYTNQ-HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 + VF T IAS+ L + +NQ H L + K + +++ K Q S W A DLS EQ++YAA Sbjct: 103 PKIVFDTMIASQILAKGDSNQRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSSEQIEYAA 162 Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 D+ LR F E+ +L + +L Sbjct: 163 KDI---DTLRHLFKEEKNQLNQDNLHKKAS 189 >gi|331683306|ref|ZP_08383907.1| ribonuclease D [Escherichia coli H299] gi|331079521|gb|EGI50718.1| ribonuclease D [Escherichia coli H299] Length = 371 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 6/180 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL-MDRAEL 193 + +DW A L++ Q +YAA+DV +L + + + + G A C + M R E+ Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEI 189 >gi|238897738|ref|YP_002923417.1| RNase D, processes tRNA precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465495|gb|ACQ67269.1| RNase D, processes tRNA precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 387 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 3/169 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+A+DTE + L ++QL G V +I + AP +L ++K K H Sbjct: 35 AVALDTEFVRTKTYYAELGLIQLYDGH-RVSLIDPFLITEWAP-FYCLLKNKKIVKFLHS 92 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 DI + F+ F P+ ++I + T + G +KE GI ++KA+ +DW Sbjct: 93 AGEDIEIFFHFFKTLPEPLIDSQILAAFTGRPVSC-GFSILVKEFQGIVLNKAESRTDWL 151 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 A LS +Q YAA DV +L L +K++ G + C L R Sbjct: 152 ARPLSQKQCDYAAEDVFYLLPLANALMKKIETSGWMEAVKEECELLCQR 200 >gi|205357935|ref|ZP_02574364.2| ribonuclease D [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328669|gb|EDZ15433.1| ribonuclease D [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|323130091|gb|ADX17521.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 390 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 33 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 90 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 91 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 148 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 149 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 204 >gi|145628753|ref|ZP_01784553.1| ribonuclease D [Haemophilus influenzae 22.1-21] gi|144979223|gb|EDJ88909.1| ribonuclease D [Haemophilus influenzae 22.1-21] Length = 399 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V ++ A +P V +L + K Sbjct: 46 AQMKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLVDPLAITDFSP-FVALLSNPKVL 103 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R T+ GL ++ L + I K Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNVEIDKGAT 162 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 163 RTNWIKRPLSDIQLQYAAGDVWYLLPL 189 >gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica] Length = 354 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 8/174 (4%) Query: 14 ECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 E A R D+ A+DTE L R+ LC++Q S G +I + +P +G + Sbjct: 13 EQAGRGSDSPVCAIDTEADSLHRYRESLCLIQFS-AKGESVLIDPLVIEDLSP--LGSYL 69 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 E H +D+ + FG + V+ T+I +RL + GL D + G+ + Sbjct: 70 SEA-TVWMHGADYDMTMFKRQFGDLPKVVYDTQIGARLL--GARRFGLGDLVSLYFGVEL 126 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 SK+ Q +DW LS + ++YA +DV +L + KL+ LGR + C Sbjct: 127 SKSSQKADWGKRPLSPKMIEYALNDVHYLLEMGDLIVTKLKDLGRYEWFLESCT 180 >gi|254286913|ref|ZP_04961865.1| ribonuclease D [Vibrio cholerae AM-19226] gi|150423063|gb|EDN15012.1| ribonuclease D [Vibrio cholerae AM-19226] Length = 381 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 4/168 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 18 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 76 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAG 182 >gi|213648384|ref|ZP_03378437.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 371 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 14 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185 >gi|16765158|ref|NP_460773.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194448143|ref|YP_002045863.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197262566|ref|ZP_03162640.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205358997|ref|ZP_02666341.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|16420349|gb|AAL20732.1| RNase D [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194406447|gb|ACF66666.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197240821|gb|EDY23441.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205339484|gb|EDZ26248.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261247002|emb|CBG24819.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993774|gb|ACY88659.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158341|emb|CBW17840.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332988704|gb|AEF07687.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 375 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 18 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189 >gi|30062942|ref|NP_837113.1| ribonuclease D [Shigella flexneri 2a str. 2457T] gi|56479892|ref|NP_707318.2| ribonuclease D [Shigella flexneri 2a str. 301] gi|30041191|gb|AAP16920.1| RNase D [Shigella flexneri 2a str. 2457T] gi|56383443|gb|AAN43025.2| RNase D [Shigella flexneri 2a str. 301] gi|313649164|gb|EFS13598.1| ribonuclease D [Shigella flexneri 2a str. 2457T] gi|332758877|gb|EGJ89192.1| ribonuclease D [Shigella flexneri 2747-71] gi|332762455|gb|EGJ92720.1| ribonuclease D [Shigella flexneri 4343-70] gi|332767130|gb|EGJ97325.1| ribonuclease D [Shigella flexneri 2930-71] gi|333004261|gb|EGK23792.1| ribonuclease D [Shigella flexneri K-218] Length = 371 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRVFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|170717427|ref|YP_001784527.1| ribonuclease D [Haemophilus somnus 2336] gi|168825556|gb|ACA30927.1| ribonuclease D [Haemophilus somnus 2336] Length = 381 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 4/172 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ IA+DTE + +L ++QL G+ V +I +P + +L ++K Sbjct: 30 AQQKTVIALDTEFVRTKSFYPKLGLIQLYDGE-QVSLIDPFELNDFSP-FIQLLANQKVT 87 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + F P+ T+I + + + N GL LK + I K Sbjct: 88 KVLHACSEDLEVFQHYFQQLPTPMLDTQIMAAFLQ-HGNSIGLATLLKHYFKLEIDKGIS 146 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSDLATSCCNFL 187 ++W A LSD QL YAA+DV +L L + +KL Q +S + C N L Sbjct: 147 RTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTSWQSAVQNDCENLL 198 >gi|213052594|ref|ZP_03345472.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419335|ref|ZP_03352401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426609|ref|ZP_03359359.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213609541|ref|ZP_03369367.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|289828970|ref|ZP_06546670.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 371 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 14 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185 >gi|161613674|ref|YP_001587639.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363038|gb|ABX66806.1| hypothetical protein SPAB_01399 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|322616813|gb|EFY13721.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618052|gb|EFY14944.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625723|gb|EFY22542.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626173|gb|EFY22983.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633779|gb|EFY30519.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638933|gb|EFY35626.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640751|gb|EFY37401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644138|gb|EFY40683.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649210|gb|EFY45648.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655369|gb|EFY51677.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660875|gb|EFY57106.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662828|gb|EFY59035.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668012|gb|EFY64171.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674226|gb|EFY70320.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675419|gb|EFY71493.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683166|gb|EFY79182.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686859|gb|EFY82837.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195248|gb|EFZ80428.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200159|gb|EFZ85245.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203843|gb|EFZ88861.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207397|gb|EFZ92345.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213750|gb|EFZ98532.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217380|gb|EGA02099.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220925|gb|EGA05358.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224700|gb|EGA08971.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231403|gb|EGA15516.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235843|gb|EGA19922.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240412|gb|EGA24455.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245305|gb|EGA29305.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246673|gb|EGA30645.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253527|gb|EGA37355.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323263330|gb|EGA46866.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266778|gb|EGA50264.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268984|gb|EGA52440.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 371 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 14 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185 >gi|110641921|ref|YP_669651.1| ribonuclease D [Escherichia coli 536] gi|300981914|ref|ZP_07175784.1| ribonuclease D [Escherichia coli MS 200-1] gi|110343513|gb|ABG69750.1| ribonuclease D [Escherichia coli 536] gi|300307392|gb|EFJ61912.1| ribonuclease D [Escherichia coli MS 200-1] gi|324011590|gb|EGB80809.1| ribonuclease D [Escherichia coli MS 60-1] Length = 371 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|152978783|ref|YP_001344412.1| ribonuclease D [Actinobacillus succinogenes 130Z] gi|150840506|gb|ABR74477.1| ribonuclease D [Actinobacillus succinogenes 130Z] Length = 383 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I +P +L D Sbjct: 27 AQQKSAVALDTEFIRIRSYYPKLGLIQLYDGE-RVSLIDPTTITDFSP-FTALLADINVI 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + F P+ T++ + + + GL ++ L + I K Sbjct: 85 KVLHACYEDLEVFSHYFQQLPEPIMDTQVMAGFL-AFPHSTGLASLIRHYLALEIDKGAS 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++QLQYAA+DV +L L + +L + C L+++ Sbjct: 144 RTDWLARPLSEKQLQYAAADVWYLLPLYEKMAVELAKTRWQSAVEFDCGLLLEK 197 >gi|293410113|ref|ZP_06653689.1| ribonuclease D [Escherichia coli B354] gi|291470581|gb|EFF13065.1| ribonuclease D [Escherichia coli B354] Length = 371 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLSAALDECRLMQMR 185 >gi|294635861|ref|ZP_06714315.1| ribonuclease D [Edwardsiella tarda ATCC 23685] gi|291090794|gb|EFE23355.1| ribonuclease D [Edwardsiella tarda ATCC 23685] Length = 376 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+DTE + +L +VQL G+ +D + I+ Q V +L + + K+ H Sbjct: 30 VALDTEFVRTRTYYPQLGLVQLYDGETLSLIDPLPISDWQP----FVDLLRNPQVVKLLH 85 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSSD 139 G D+ V + F +P+ T+I + T R ++ G + LG+ + K++ +D Sbjct: 86 AGSEDLEVFLHDFQTLPQPLIDTQILAAFTGRPLSS--GFAAMVNAYLGVELDKSESRTD 143 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 W A LS+ Q YAA+DV +L + Q +++ G A C L R Sbjct: 144 WLARPLSERQCDYAAADVYYLLPMAHQLLAEVEGCGWLPAALDECQALCRR 194 >gi|300938850|ref|ZP_07153558.1| ribonuclease D [Escherichia coli MS 21-1] gi|300456240|gb|EFK19733.1| ribonuclease D [Escherichia coli MS 21-1] Length = 371 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|261343835|ref|ZP_05971480.1| ribonuclease D [Providencia rustigianii DSM 4541] gi|282568219|gb|EFB73754.1| ribonuclease D [Providencia rustigianii DSM 4541] Length = 373 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 3/168 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + +L ++QL G+ V +I +P +L + + K H G Sbjct: 25 LALDTEFVRTRTYYPQLGLLQLYDGN-QVSLIDPLLMTDFSP-FKALLTNPNQLKFLHAG 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V + FG P+ T+I + Y G + E LGI + K++ +DW A Sbjct: 83 SEDLEVFIHDFGCVPEPMIDTQIVAAFL-GYPISCGFATLVVEHLGIELDKSESRTDWLA 141 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 LS +Q YA +DV++L L EK+ G D A C ++ R Sbjct: 142 RPLSAKQCDYATADVLYLLPLAKILMEKVTEAGYLDDAKDECQRVVAR 189 >gi|194445618|ref|YP_002041074.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|200390008|ref|ZP_03216619.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194404281|gb|ACF64503.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|199602453|gb|EDZ00999.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 375 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 18 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189 >gi|16760707|ref|NP_456324.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141535|ref|NP_804877.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25289178|pir||AB0725 ribonuclease D [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503004|emb|CAD05500.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi] gi|29137162|gb|AAO68726.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 375 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 18 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189 >gi|309788586|ref|ZP_07683188.1| ribonuclease D [Shigella dysenteriae 1617] gi|308923613|gb|EFP69118.1| ribonuclease D [Shigella dysenteriae 1617] Length = 275 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V FG +P+ T+I + + G ++E G+ + K++ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS-WGFASMVEEYSGVTLDKSE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|170680016|ref|YP_001743442.1| ribonuclease D [Escherichia coli SMS-3-5] gi|218699628|ref|YP_002407257.1| ribonuclease D [Escherichia coli IAI39] gi|170517734|gb|ACB15912.1| ribonuclease D [Escherichia coli SMS-3-5] gi|218369614|emb|CAR17383.1| ribonuclease D [Escherichia coli IAI39] Length = 375 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|56413264|ref|YP_150339.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362190|ref|YP_002141827.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127521|gb|AAV77027.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093667|emb|CAR59137.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 371 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 14 AVRTCPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185 >gi|323152955|gb|EFZ39224.1| ribonuclease D [Escherichia coli EPECa14] Length = 371 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|191171723|ref|ZP_03033270.1| ribonuclease D [Escherichia coli F11] gi|190908053|gb|EDV67645.1| ribonuclease D [Escherichia coli F11] gi|284921723|emb|CBG34795.1| ribonuclease D [Escherichia coli 042] Length = 375 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|229897495|ref|ZP_04512651.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229693832|gb|EEO83881.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2] Length = 308 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR IA+DTE + +L ++QL G+ +D + I Q +L D Sbjct: 32 ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRALLQDLN 87 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F P+ T++ + + R+ + G + E G+ + K Sbjct: 88 VVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFSGRSLSC--GFAMLVAEFEGVELDK 145 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 146 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 202 >gi|312912807|dbj|BAJ36781.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224451|gb|EFX49514.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 371 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 14 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185 >gi|110805403|ref|YP_688923.1| ribonuclease D [Shigella flexneri 5 str. 8401] gi|110614951|gb|ABF03618.1| RNase D, processes tRNA precursor [Shigella flexneri 5 str. 8401] gi|281600843|gb|ADA73827.1| RNase D [Shigella flexneri 2002017] gi|332759595|gb|EGJ89901.1| ribonuclease D [Shigella flexneri K-671] gi|333018392|gb|EGK37691.1| ribonuclease D [Shigella flexneri K-304] Length = 375 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRVFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|145636341|ref|ZP_01792010.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH] gi|145270506|gb|EDK10440.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH] Length = 382 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P + +L + K Sbjct: 27 AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FIALLANPKVL 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V F RP+ T+I +R T+ GL ++ L + I K Sbjct: 85 KVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNVEIDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170 >gi|323186982|gb|EFZ72300.1| ribonuclease D [Escherichia coli RN587/1] Length = 371 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|192361069|ref|YP_001982899.1| ribonuclease D [Cellvibrio japonicus Ueda107] gi|190687234|gb|ACE84912.1| ribonuclease D [Cellvibrio japonicus Ueda107] Length = 378 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 7/176 (3%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKR 75 R AIAVDTE + ++Q+ G G +D + IA Q L +L+D K Sbjct: 24 RQQGAIAVDTEFMRTDTFYPIAGLLQIGDGKGCYLIDPLAIADWQP----LRELLLDGKV 79 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H D+ V + P+F T+I + G + +K LLGI I K + Sbjct: 80 IKVLHSCSEDLEVFQRWLDLVPSPLFDTQIGAAFANLGFG-LGYANLVKTLLGIEIPKDE 138 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 SDW LS QL+YAA DV H+ + + + L+ R + S C L+++A Sbjct: 139 TRSDWLQRPLSQSQLKYAALDVAHMLVVYGKLLQILKTSQRLEWVKSDCADLVEQA 194 >gi|285018846|ref|YP_003376557.1| ribonuclease d protein [Xanthomonas albilineans GPE PC73] gi|283474064|emb|CBA16565.1| probable ribonuclease d protein [Xanthomonas albilineans] Length = 361 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 3/165 (1%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 AE A+ I +DTE + +L +VQ++ + + I + G A L L D Sbjct: 12 AERLAQRPARIGLDTEFVRERTYWPQLALVQMAVAEEILLIDPLIPGMPQA--LAPWLSD 69 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 KI H D+ G RP+F T+IA+ L G + + ++ GI+++ Sbjct: 70 PGILKIMHSASEDLVTFKCACGTLPRPLFDTQIAAGLAGIGAGM-GYQKLVLDITGIHLT 128 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 K + SDW LS QL+YAA DV HL AL +LQ L RS Sbjct: 129 KGETRSDWLRRPLSPAQLEYAADDVRHLFALHDTLHARLQALDRS 173 >gi|90419527|ref|ZP_01227437.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1] gi|90336464|gb|EAS50205.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1] Length = 385 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 2/173 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE + LC++Q++ D V + +A G AP ++ DE+ K+FH Sbjct: 25 VTVDTEFIRETTFWPELCLIQMASDDLAVLVDPLADGLDLAP-FFDLMRDERIVKVFHAA 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ ++ + P+F T++A+ + + + I K + +DW Sbjct: 84 RQDVEIIHKLGDIIPVPLFDTQVAAMVC-GFGESIAYDQLVARTTDGRIDKTSRFTDWRR 142 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 LSD+QL YA +DV +L + + +L GR+ L D A DL Sbjct: 143 RPLSDQQLAYALADVTYLRDVYRFLSAQLAEKGRTRWVDEEMAVLTDPATYDL 195 >gi|170770112|ref|ZP_02904565.1| ribonuclease D [Escherichia albertii TW07627] gi|170121069|gb|EDS90000.1| ribonuclease D [Escherichia albertii TW07627] Length = 375 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVRYLLPITTKLMAETEASGWLPAALDECRLMQIR 189 >gi|117623964|ref|YP_852877.1| ribonuclease D [Escherichia coli APEC O1] gi|227885769|ref|ZP_04003574.1| ribonuclease D [Escherichia coli 83972] gi|237705754|ref|ZP_04536235.1| ribonuclease D [Escherichia sp. 3_2_53FAA] gi|300994259|ref|ZP_07180813.1| ribonuclease D [Escherichia coli MS 45-1] gi|301050852|ref|ZP_07197705.1| ribonuclease D [Escherichia coli MS 185-1] gi|306814949|ref|ZP_07449105.1| ribonuclease D [Escherichia coli NC101] gi|312967002|ref|ZP_07781220.1| ribonuclease D [Escherichia coli 2362-75] gi|331657844|ref|ZP_08358806.1| ribonuclease D [Escherichia coli TA206] gi|115513088|gb|ABJ01163.1| Ribonuclease D [Escherichia coli APEC O1] gi|222033551|emb|CAP76292.1| ribonuclease D [Escherichia coli LF82] gi|226900511|gb|EEH86770.1| ribonuclease D [Escherichia sp. 3_2_53FAA] gi|227837342|gb|EEJ47808.1| ribonuclease D [Escherichia coli 83972] gi|300297490|gb|EFJ53875.1| ribonuclease D [Escherichia coli MS 185-1] gi|300406325|gb|EFJ89863.1| ribonuclease D [Escherichia coli MS 45-1] gi|305851597|gb|EFM52050.1| ribonuclease D [Escherichia coli NC101] gi|307553822|gb|ADN46597.1| ribonuclease D [Escherichia coli ABU 83972] gi|307626717|gb|ADN71021.1| ribonuclease D [Escherichia coli UM146] gi|312288466|gb|EFR16368.1| ribonuclease D [Escherichia coli 2362-75] gi|312946400|gb|ADR27227.1| ribonuclease D [Escherichia coli O83:H1 str. NRG 857C] gi|315286519|gb|EFU45954.1| ribonuclease D [Escherichia coli MS 110-3] gi|315290392|gb|EFU49767.1| ribonuclease D [Escherichia coli MS 153-1] gi|315299924|gb|EFU59162.1| ribonuclease D [Escherichia coli MS 16-3] gi|323952305|gb|EGB48178.1| ribonuclease D [Escherichia coli H252] gi|323956433|gb|EGB52175.1| ribonuclease D [Escherichia coli H263] gi|323978014|gb|EGB73100.1| ribonuclease D [Escherichia coli TW10509] gi|324007181|gb|EGB76400.1| ribonuclease D [Escherichia coli MS 57-2] gi|331056092|gb|EGI28101.1| ribonuclease D [Escherichia coli TA206] Length = 371 Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|300904667|ref|ZP_07122502.1| ribonuclease D [Escherichia coli MS 84-1] gi|301305900|ref|ZP_07211983.1| ribonuclease D [Escherichia coli MS 124-1] gi|300403417|gb|EFJ86955.1| ribonuclease D [Escherichia coli MS 84-1] gi|300838826|gb|EFK66586.1| ribonuclease D [Escherichia coli MS 124-1] gi|315257385|gb|EFU37353.1| ribonuclease D [Escherichia coli MS 85-1] gi|323180583|gb|EFZ66128.1| ribonuclease D [Escherichia coli 1180] Length = 371 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|260855663|ref|YP_003229554.1| ribonuclease D [Escherichia coli O26:H11 str. 11368] gi|257754312|dbj|BAI25814.1| ribonuclease D [Escherichia coli O26:H11 str. 11368] Length = 375 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|15802217|ref|NP_288240.1| ribonuclease D [Escherichia coli O157:H7 EDL933] gi|12515844|gb|AAG56793.1|AE005403_4 RNase D, processes tRNA precursor [Escherichia coli O157:H7 str. EDL933] Length = 375 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|108760811|ref|YP_634116.1| putative ribonuclease D [Myxococcus xanthus DK 1622] gi|108464691|gb|ABF89876.1| putative ribonuclease D [Myxococcus xanthus DK 1622] Length = 389 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 7/150 (4%) Query: 14 ECAARYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 E A R ++A IAVD E + R RLC +QL+ D + + G L ++ Sbjct: 18 ESATRTLEAAREIAVDLEADSMHAFRARLCFLQLATDDQVFLLDTLQPGVVPG-MLAPLM 76 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D R K FH + D+ L GVRV+ +F T A+ L + GL D +E LG+ Sbjct: 77 ADPARTKFFHAAQGDLQFL-AEVGVRVQGLFDTHRAATLL--GWPKVGLADLARERLGVE 133 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 + K Q SD+S L +Y A+DV +L Sbjct: 134 LPKEHQQSDFSIRPLPPGMREYIANDVRYL 163 >gi|16129758|ref|NP_416318.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655] gi|89108643|ref|AP_002423.1| ribonuclease D [Escherichia coli str. K-12 substr. W3110] gi|170081460|ref|YP_001730780.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B] gi|238901018|ref|YP_002926814.1| ribonuclease D [Escherichia coli BW2952] gi|301019362|ref|ZP_07183546.1| ribonuclease D [Escherichia coli MS 196-1] gi|133152|sp|P09155|RND_ECOLI RecName: Full=Ribonuclease D; Short=RNase D gi|75765643|pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An Exoribonuclease Involved In Structured Rna Processing gi|581215|emb|CAA30098.1| unnamed protein product [Escherichia coli] gi|1736427|dbj|BAA15599.1| ribonuclease D [Escherichia coli str. K12 substr. W3110] gi|1788105|gb|AAC74874.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655] gi|169889295|gb|ACB03002.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B] gi|238863466|gb|ACR65464.1| ribonuclease D [Escherichia coli BW2952] gi|299882254|gb|EFI90465.1| ribonuclease D [Escherichia coli MS 196-1] gi|309702026|emb|CBJ01340.1| ribonuclease D [Escherichia coli ETEC H10407] gi|315136445|dbj|BAJ43604.1| ribonuclease D [Escherichia coli DH1] gi|226093|prf||1410308A ribonuclease D Length = 375 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|170019851|ref|YP_001724805.1| ribonuclease D [Escherichia coli ATCC 8739] gi|256022532|ref|ZP_05436397.1| ribonuclease D [Escherichia sp. 4_1_40B] gi|293415119|ref|ZP_06657762.1| ribonuclease D [Escherichia coli B185] gi|300951410|ref|ZP_07165251.1| ribonuclease D [Escherichia coli MS 116-1] gi|300956696|ref|ZP_07168970.1| ribonuclease D [Escherichia coli MS 175-1] gi|301645686|ref|ZP_07245613.1| ribonuclease D [Escherichia coli MS 146-1] gi|307138464|ref|ZP_07497820.1| ribonuclease D [Escherichia coli H736] gi|331642413|ref|ZP_08343548.1| ribonuclease D [Escherichia coli H736] gi|331653208|ref|ZP_08354213.1| ribonuclease D [Escherichia coli M718] gi|169754779|gb|ACA77478.1| ribonuclease D [Escherichia coli ATCC 8739] gi|260449075|gb|ACX39497.1| ribonuclease D [Escherichia coli DH1] gi|291432767|gb|EFF05746.1| ribonuclease D [Escherichia coli B185] gi|300316496|gb|EFJ66280.1| ribonuclease D [Escherichia coli MS 175-1] gi|300449336|gb|EFK12956.1| ribonuclease D [Escherichia coli MS 116-1] gi|301076058|gb|EFK90864.1| ribonuclease D [Escherichia coli MS 146-1] gi|323937062|gb|EGB33342.1| ribonuclease D [Escherichia coli E1520] gi|323940530|gb|EGB36721.1| ribonuclease D [Escherichia coli E482] gi|331039211|gb|EGI11431.1| ribonuclease D [Escherichia coli H736] gi|331049306|gb|EGI21378.1| ribonuclease D [Escherichia coli M718] gi|332343528|gb|AEE56862.1| ribonuclease D [Escherichia coli UMNK88] gi|333006772|gb|EGK26269.1| ribonuclease D [Shigella flexneri K-272] Length = 371 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|310815760|ref|YP_003963724.1| ribonuclease D [Ketogulonicigenium vulgare Y25] gi|308754495|gb|ADO42424.1| ribonuclease D [Ketogulonicigenium vulgare Y25] Length = 388 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + VDTE L +LC+VQL S D ++ A + L + ++ K+FH Sbjct: 23 VTVDTEFLRERTYYAKLCLVQLAFSGPDADAALVDPLADGIDLKPLYDLFLNPAVVKVFH 82 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + V P+F T++A+ + Y Q + +++ +I K + +DW Sbjct: 83 AARQDLEIFSVGQNVIPAPLFDTQVAAMVC-GYGEQVSYETLARKIAKADIDKTSRFTDW 141 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 S LS+ Q +YA +DV HL + + ++ + GR+ Sbjct: 142 SRRPLSEAQKEYALADVTHLRQIYENLSAQIAKSGRA 178 >gi|301169093|emb|CBW28690.1| ribonuclease D [Haemophilus influenzae 10810] Length = 382 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P V +L + K Sbjct: 27 AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLSNPKVL 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V F RP+ T+I +R T+ GL ++ L + I K Sbjct: 85 KVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNVEIDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170 >gi|82776970|ref|YP_403319.1| ribonuclease D [Shigella dysenteriae Sd197] gi|81241118|gb|ABB61828.1| RNase D [Shigella dysenteriae Sd197] Length = 375 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|195937492|ref|ZP_03082874.1| ribonuclease D [Escherichia coli O157:H7 str. EC4024] gi|256018008|ref|ZP_05431873.1| ribonuclease D [Shigella sp. D9] gi|261227700|ref|ZP_05941981.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK2000] gi|261258135|ref|ZP_05950668.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK966] gi|293405300|ref|ZP_06649292.1| ribonuclease D [Escherichia coli FVEC1412] gi|298380942|ref|ZP_06990541.1| ribonuclease D [Escherichia coli FVEC1302] gi|300816311|ref|ZP_07096533.1| ribonuclease D [Escherichia coli MS 107-1] gi|300823140|ref|ZP_07103273.1| ribonuclease D [Escherichia coli MS 119-7] gi|300899043|ref|ZP_07117330.1| ribonuclease D [Escherichia coli MS 198-1] gi|300917626|ref|ZP_07134277.1| ribonuclease D [Escherichia coli MS 115-1] gi|300924870|ref|ZP_07140803.1| ribonuclease D [Escherichia coli MS 182-1] gi|307314118|ref|ZP_07593730.1| ribonuclease D [Escherichia coli W] gi|309794180|ref|ZP_07688604.1| ribonuclease D [Escherichia coli MS 145-7] gi|331663292|ref|ZP_08364202.1| ribonuclease D [Escherichia coli TA143] gi|331668492|ref|ZP_08369340.1| ribonuclease D [Escherichia coli TA271] gi|331673338|ref|ZP_08374106.1| ribonuclease D [Escherichia coli TA280] gi|331677680|ref|ZP_08378355.1| ribonuclease D [Escherichia coli H591] gi|291427508|gb|EFF00535.1| ribonuclease D [Escherichia coli FVEC1412] gi|298278384|gb|EFI19898.1| ribonuclease D [Escherichia coli FVEC1302] gi|300357343|gb|EFJ73213.1| ribonuclease D [Escherichia coli MS 198-1] gi|300415143|gb|EFJ98453.1| ribonuclease D [Escherichia coli MS 115-1] gi|300418949|gb|EFK02260.1| ribonuclease D [Escherichia coli MS 182-1] gi|300524294|gb|EFK45363.1| ribonuclease D [Escherichia coli MS 119-7] gi|300531001|gb|EFK52063.1| ribonuclease D [Escherichia coli MS 107-1] gi|306906256|gb|EFN36773.1| ribonuclease D [Escherichia coli W] gi|308122085|gb|EFO59347.1| ribonuclease D [Escherichia coli MS 145-7] gi|315061107|gb|ADT75434.1| ribonuclease D [Escherichia coli W] gi|320188500|gb|EFW63162.1| Ribonuclease D [Escherichia coli O157:H7 str. EC1212] gi|320197983|gb|EFW72591.1| Ribonuclease D [Escherichia coli EC4100B] gi|320641655|gb|EFX11043.1| ribonuclease D [Escherichia coli O157:H7 str. G5101] gi|320647014|gb|EFX15847.1| ribonuclease D [Escherichia coli O157:H- str. 493-89] gi|320652296|gb|EFX20594.1| ribonuclease D [Escherichia coli O157:H- str. H 2687] gi|320657898|gb|EFX25660.1| ribonuclease D [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658471|gb|EFX26165.1| ribonuclease D [Escherichia coli O55:H7 str. USDA 5905] gi|320668369|gb|EFX35196.1| ribonuclease D [Escherichia coli O157:H7 str. LSU-61] gi|323158715|gb|EFZ44729.1| ribonuclease D [Escherichia coli E128010] gi|323186449|gb|EFZ71797.1| ribonuclease D [Escherichia coli 1357] gi|323378318|gb|ADX50586.1| ribonuclease D [Escherichia coli KO11] gi|323948311|gb|EGB44299.1| ribonuclease D [Escherichia coli H120] gi|324018061|gb|EGB87280.1| ribonuclease D [Escherichia coli MS 117-3] gi|324118864|gb|EGC12753.1| ribonuclease D [Escherichia coli E1167] gi|326342179|gb|EGD65960.1| Ribonuclease D [Escherichia coli O157:H7 str. 1044] gi|326343729|gb|EGD67491.1| Ribonuclease D [Escherichia coli O157:H7 str. 1125] gi|331059091|gb|EGI31068.1| ribonuclease D [Escherichia coli TA143] gi|331063686|gb|EGI35597.1| ribonuclease D [Escherichia coli TA271] gi|331069536|gb|EGI40923.1| ribonuclease D [Escherichia coli TA280] gi|331074140|gb|EGI45460.1| ribonuclease D [Escherichia coli H591] Length = 371 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|253773243|ref|YP_003036074.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|297516497|ref|ZP_06934883.1| ribonuclease D [Escherichia coli OP50] gi|300927881|ref|ZP_07143442.1| ribonuclease D [Escherichia coli MS 187-1] gi|312969840|ref|ZP_07784023.1| ribonuclease D [Escherichia coli 1827-70] gi|253324287|gb|ACT28889.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300464070|gb|EFK27563.1| ribonuclease D [Escherichia coli MS 187-1] gi|310338125|gb|EFQ03214.1| ribonuclease D [Escherichia coli 1827-70] gi|323961858|gb|EGB57457.1| ribonuclease D [Escherichia coli H489] gi|323972689|gb|EGB67892.1| ribonuclease D [Escherichia coli TA007] Length = 371 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|333003670|gb|EGK23206.1| ribonuclease D [Shigella flexneri VA-6] Length = 371 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRADWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|320194484|gb|EFW69115.1| Ribonuclease D [Escherichia coli WV_060327] Length = 375 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|15831767|ref|NP_310540.1| ribonuclease D [Escherichia coli O157:H7 str. Sakai] gi|157156075|ref|YP_001463104.1| ribonuclease D [Escherichia coli E24377A] gi|187776027|ref|ZP_02799888.2| ribonuclease D [Escherichia coli O157:H7 str. EC4196] gi|188024852|ref|ZP_02774388.2| ribonuclease D [Escherichia coli O157:H7 str. EC4113] gi|189010430|ref|ZP_02807242.2| ribonuclease D [Escherichia coli O157:H7 str. EC4076] gi|189402540|ref|ZP_02783120.2| ribonuclease D [Escherichia coli O157:H7 str. EC4401] gi|189403490|ref|ZP_02795783.2| ribonuclease D [Escherichia coli O157:H7 str. EC4486] gi|189404421|ref|ZP_02789258.2| ribonuclease D [Escherichia coli O157:H7 str. EC4501] gi|189405084|ref|ZP_02813223.2| ribonuclease D [Escherichia coli O157:H7 str. EC869] gi|189406051|ref|ZP_02826040.2| ribonuclease D [Escherichia coli O157:H7 str. EC508] gi|191168835|ref|ZP_03030609.1| ribonuclease D [Escherichia coli B7A] gi|193066361|ref|ZP_03047410.1| ribonuclease D [Escherichia coli E22] gi|193071290|ref|ZP_03052209.1| ribonuclease D [Escherichia coli E110019] gi|194430003|ref|ZP_03062510.1| ribonuclease D [Escherichia coli B171] gi|208810493|ref|ZP_03252369.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206] gi|208816683|ref|ZP_03257803.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045] gi|208818758|ref|ZP_03259078.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042] gi|209396542|ref|YP_002270881.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115] gi|209919169|ref|YP_002293253.1| ribonuclease D [Escherichia coli SE11] gi|217328853|ref|ZP_03444934.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588] gi|218554376|ref|YP_002387289.1| ribonuclease D [Escherichia coli IAI1] gi|218695366|ref|YP_002403033.1| ribonuclease D [Escherichia coli 55989] gi|218705302|ref|YP_002412821.1| ribonuclease D [Escherichia coli UMN026] gi|254793426|ref|YP_003078263.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359] gi|260844148|ref|YP_003221926.1| ribonuclease D [Escherichia coli O103:H2 str. 12009] gi|291282984|ref|YP_003499802.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615] gi|293446176|ref|ZP_06662598.1| ribonuclease D [Escherichia coli B088] gi|332279045|ref|ZP_08391458.1| ribonuclease D [Shigella sp. D9] gi|13361980|dbj|BAB35936.1| RNase D, processes tRNA precursor [Escherichia coli O157:H7 str. Sakai] gi|157078105|gb|ABV17813.1| ribonuclease D [Escherichia coli E24377A] gi|187769404|gb|EDU33248.1| ribonuclease D [Escherichia coli O157:H7 str. EC4196] gi|188016291|gb|EDU54413.1| ribonuclease D [Escherichia coli O157:H7 str. EC4113] gi|189000217|gb|EDU69203.1| ribonuclease D [Escherichia coli O157:H7 str. EC4076] gi|189355025|gb|EDU73444.1| ribonuclease D [Escherichia coli O157:H7 str. EC4401] gi|189360343|gb|EDU78762.1| ribonuclease D [Escherichia coli O157:H7 str. EC4486] gi|189365729|gb|EDU84145.1| ribonuclease D [Escherichia coli O157:H7 str. EC4501] gi|189371954|gb|EDU90370.1| ribonuclease D [Escherichia coli O157:H7 str. EC869] gi|189376734|gb|EDU95150.1| ribonuclease D [Escherichia coli O157:H7 str. EC508] gi|190901115|gb|EDV60890.1| ribonuclease D [Escherichia coli B7A] gi|192926009|gb|EDV80654.1| ribonuclease D [Escherichia coli E22] gi|192955385|gb|EDV85869.1| ribonuclease D [Escherichia coli E110019] gi|194411930|gb|EDX28245.1| ribonuclease D [Escherichia coli B171] gi|208725009|gb|EDZ74716.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206] gi|208731026|gb|EDZ79715.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045] gi|208738881|gb|EDZ86563.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042] gi|209157942|gb|ACI35375.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115] gi|209768038|gb|ACI82331.1| RNase D [Escherichia coli] gi|209768040|gb|ACI82332.1| RNase D [Escherichia coli] gi|209768042|gb|ACI82333.1| RNase D [Escherichia coli] gi|209768044|gb|ACI82334.1| RNase D [Escherichia coli] gi|209768046|gb|ACI82335.1| RNase D [Escherichia coli] gi|209912428|dbj|BAG77502.1| ribonuclease D [Escherichia coli SE11] gi|217318200|gb|EEC26627.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588] gi|218352098|emb|CAU97835.1| ribonuclease D [Escherichia coli 55989] gi|218361144|emb|CAQ98727.1| ribonuclease D [Escherichia coli IAI1] gi|218432399|emb|CAR13290.1| ribonuclease D [Escherichia coli UMN026] gi|254592826|gb|ACT72187.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359] gi|257759295|dbj|BAI30792.1| ribonuclease D [Escherichia coli O103:H2 str. 12009] gi|290762857|gb|ADD56818.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615] gi|291323006|gb|EFE62434.1| ribonuclease D [Escherichia coli B088] gi|332101397|gb|EGJ04743.1| ribonuclease D [Shigella sp. D9] Length = 375 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|109899113|ref|YP_662368.1| ribonuclease D [Pseudoalteromonas atlantica T6c] gi|109701394|gb|ABG41314.1| ribonuclease D [Pseudoalteromonas atlantica T6c] Length = 400 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 7/157 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 AIAVDTE + +L ++Q+ G +D + I+ + L +L DE K+ Sbjct: 34 AIAVDTEFVRTRTLYPQLGLIQIYDGQQIALIDPLEIS----DFTALKAILTDENIVKVL 89 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H DI + RP+F ++ A+ +T + G ++ +L I + K + +D Sbjct: 90 HSCSEDIETFICALDIVPRPIFDSQFAAAITGMGPS-LGYAKLVEVMLDIQVDKGESRTD 148 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 W A LS +Q QYAA DV++L L +K GR Sbjct: 149 WLARPLSPKQCQYAAYDVLYLFQLYPTLCDKTLAQGR 185 >gi|260868323|ref|YP_003234725.1| ribonuclease D [Escherichia coli O111:H- str. 11128] gi|257764679|dbj|BAI36174.1| ribonuclease D [Escherichia coli O111:H- str. 11128] Length = 375 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|26248062|ref|NP_754102.1| ribonuclease D [Escherichia coli CFT073] gi|91211019|ref|YP_541005.1| ribonuclease D [Escherichia coli UTI89] gi|215487015|ref|YP_002329446.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69] gi|218558666|ref|YP_002391579.1| ribonuclease D [Escherichia coli S88] gi|218689740|ref|YP_002397952.1| ribonuclease D [Escherichia coli ED1a] gi|26108465|gb|AAN80667.1|AE016761_242 Ribonuclease D [Escherichia coli CFT073] gi|91072593|gb|ABE07474.1| ribonuclease D [Escherichia coli UTI89] gi|215265087|emb|CAS09475.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69] gi|218365435|emb|CAR03162.1| ribonuclease D [Escherichia coli S88] gi|218427304|emb|CAR08103.1| ribonuclease D [Escherichia coli ED1a] gi|294489955|gb|ADE88711.1| ribonuclease D [Escherichia coli IHE3034] Length = 375 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|301026544|ref|ZP_07189972.1| ribonuclease D [Escherichia coli MS 69-1] gi|300395475|gb|EFJ79013.1| ribonuclease D [Escherichia coli MS 69-1] Length = 371 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPIS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|323175119|gb|EFZ60733.1| ribonuclease D [Escherichia coli LT-68] Length = 375 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|157161268|ref|YP_001458586.1| ribonuclease D [Escherichia coli HS] gi|188495947|ref|ZP_03003217.1| ribonuclease D [Escherichia coli 53638] gi|194439630|ref|ZP_03071702.1| ribonuclease D [Escherichia coli 101-1] gi|254161863|ref|YP_003044971.1| ribonuclease D [Escherichia coli B str. REL606] gi|157066948|gb|ABV06203.1| ribonuclease D [Escherichia coli HS] gi|188491146|gb|EDU66249.1| ribonuclease D [Escherichia coli 53638] gi|194421451|gb|EDX37466.1| ribonuclease D [Escherichia coli 101-1] gi|242377525|emb|CAQ32279.1| RNase D [Escherichia coli BL21(DE3)] gi|253973764|gb|ACT39435.1| ribonuclease D [Escherichia coli B str. REL606] gi|253977958|gb|ACT43628.1| ribonuclease D [Escherichia coli BL21(DE3)] Length = 375 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|148825327|ref|YP_001290080.1| ribonuclease D [Haemophilus influenzae PittEE] gi|148715487|gb|ABQ97697.1| translation-associated GTPase [Haemophilus influenzae PittEE] Length = 380 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P + +L + K Sbjct: 27 AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FIALLANPKVL 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R GL ++ L I I K Sbjct: 85 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNIEIDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + + C + + Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALSK 197 >gi|238788499|ref|ZP_04632292.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641] gi|238723412|gb|EEQ15059.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641] Length = 394 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR +A+DTE + +L ++QL G+ +D + I Q +L D Sbjct: 40 ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRELLQDLN 95 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V FG+ P+ T++ + + RT + G + E G+ + K Sbjct: 96 VVKYLHAGSEDLEVFLNAFGLMPTPMIDTQVLAAFSGRTLSC--GFAMLVNEFEGVELDK 153 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + + R D A C L R Sbjct: 154 SESRTDWIARPLSEKQCDYAAADVFYLLPLATKLVAATEAAERMDAAIDECQLLCRR 210 >gi|320181157|gb|EFW56076.1| Ribonuclease D [Shigella boydii ATCC 9905] gi|332089922|gb|EGI95022.1| ribonuclease D [Shigella boydii 5216-82] gi|332093315|gb|EGI98374.1| ribonuclease D [Shigella dysenteriae 155-74] Length = 371 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKSILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|281178870|dbj|BAI55200.1| ribonuclease D [Escherichia coli SE15] Length = 375 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|262041917|ref|ZP_06015100.1| ribonuclease D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040723|gb|EEW41811.1| ribonuclease D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 371 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AA A+A+DTE + +L ++QL G V +I AP + +L+++ Sbjct: 14 AASTASAVALDTEFVRTRTYYPQLGLLQLFDGQ-QVSLIDPLTINDWAP-MRDLLLNQDV 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V F + +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + Q + R G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQR 185 >gi|326795603|ref|YP_004313423.1| ribonuclease D [Marinomonas mediterranea MMB-1] gi|326546367|gb|ADZ91587.1| ribonuclease D [Marinomonas mediterranea MMB-1] Length = 383 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 9/171 (5%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 ++ IAVDTE L ++Q+S G+ V +I + AP L ++V+ K+F Sbjct: 29 LNVIAVDTEFLRRTTYYPITGLIQISEGEKAV-LIDPQTITEWAP-LKDLMVNLDVMKVF 86 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL---LGINISKAQQ 136 H D+ V GV P + T+I Y N +K + L I ++K + Sbjct: 87 HACSEDLDVFDRLLGVLPTPFYDTQIG----EAYANGQWSVSYVKLIQAYLSIEVAKDET 142 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 SDW+ L++ Q +YAA DVV+L + Q E LQ+ D A C+ L Sbjct: 143 RSDWTVRPLTEAQKRYAALDVVYLAKVYPQQIEMLQKKNMLDWALEDCDTL 193 >gi|254226821|ref|ZP_04920393.1| ribonuclease D [Vibrio cholerae V51] gi|125620668|gb|EAZ49030.1| ribonuclease D [Vibrio cholerae V51] Length = 381 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 4/168 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 18 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 76 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTQAG 182 >gi|198244835|ref|YP_002215323.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939351|gb|ACH76684.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 375 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 18 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189 >gi|152970868|ref|YP_001335977.1| ribonuclease D [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955717|gb|ABR77747.1| RNase D, processes tRNA precursor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 371 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AA A+A+DTE + +L ++QL G V +I AP + +L+++ Sbjct: 14 AASTASAVALDTEFVRTRTYYPQLGLLQLFDGQ-QVSLIDPLTINDWAP-MRDLLLNQDV 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V F + +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + Q + R G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQR 185 >gi|51596384|ref|YP_070575.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953] gi|149365996|ref|ZP_01888031.1| ribonuclease D [Yersinia pestis CA88-4125] gi|153949850|ref|YP_001400986.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758] gi|162421744|ref|YP_001606825.1| ribonuclease D [Yersinia pestis Angola] gi|165928352|ref|ZP_02224184.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016] gi|165938856|ref|ZP_02227410.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275] gi|166009317|ref|ZP_02230215.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001] gi|166210648|ref|ZP_02236683.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004] gi|167401505|ref|ZP_02307002.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420357|ref|ZP_02312110.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424411|ref|ZP_02316164.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024358|ref|YP_001720863.1| ribonuclease D [Yersinia pseudotuberculosis YPIII] gi|218929182|ref|YP_002347057.1| ribonuclease D [Yersinia pestis CO92] gi|229894791|ref|ZP_04509971.1| ribonuclease D [Yersinia pestis Pestoides A] gi|229898140|ref|ZP_04513289.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195] gi|229902002|ref|ZP_04517123.1| ribonuclease D [Yersinia pestis Nepal516] gi|270490819|ref|ZP_06207893.1| ribonuclease D [Yersinia pestis KIM D27] gi|294503859|ref|YP_003567921.1| ribonuclease D [Yersinia pestis Z176003] gi|51589666|emb|CAH21296.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953] gi|115347793|emb|CAL20710.1| ribonuclease D [Yersinia pestis CO92] gi|149292409|gb|EDM42483.1| ribonuclease D [Yersinia pestis CA88-4125] gi|152961345|gb|ABS48806.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758] gi|162354559|gb|ABX88507.1| ribonuclease D [Yersinia pestis Angola] gi|165913219|gb|EDR31842.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275] gi|165919635|gb|EDR36968.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016] gi|165991872|gb|EDR44173.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001] gi|166207828|gb|EDR52308.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004] gi|166962052|gb|EDR58073.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049201|gb|EDR60609.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056293|gb|EDR66062.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750892|gb|ACA68410.1| ribonuclease D [Yersinia pseudotuberculosis YPIII] gi|229680898|gb|EEO76993.1| ribonuclease D [Yersinia pestis Nepal516] gi|229688856|gb|EEO80923.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195] gi|229702264|gb|EEO90283.1| ribonuclease D [Yersinia pestis Pestoides A] gi|262362022|gb|ACY58743.1| ribonuclease D [Yersinia pestis D106004] gi|262365841|gb|ACY62398.1| ribonuclease D [Yersinia pestis D182038] gi|270339323|gb|EFA50100.1| ribonuclease D [Yersinia pestis KIM D27] gi|294354318|gb|ADE64659.1| ribonuclease D [Yersinia pestis Z176003] gi|320015246|gb|ADV98817.1| ribonuclease D [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 373 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR IA+DTE + +L ++QL G+ +D + I Q +L D Sbjct: 19 ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRALLQDLN 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F P+ T++ + + R+ + G + E G+ + K Sbjct: 75 VVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFSGRSLSC--GFAMLVAEFEGVELDK 132 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 189 >gi|238895380|ref|YP_002920115.1| ribonuclease D [Klebsiella pneumoniae NTUH-K2044] gi|238547697|dbj|BAH64048.1| ribonuclease D [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 375 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AA A+A+DTE + +L ++QL G V +I AP + +L+++ Sbjct: 18 AASTASAVALDTEFVRTRTYYPQLGLLQLFDGQ-QVSLIDPLTINDWAP-MRDLLLNQDV 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V F + +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + Q + R G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQR 189 >gi|332307210|ref|YP_004435061.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174539|gb|AEE23793.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5] Length = 391 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 7/158 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 +AIAVDTE + +L ++Q+ G +D + I+ + L +L DE K+ Sbjct: 23 EAIAVDTEFVRTRTLYPKLGLIQIYDGQQIALIDPLEIS----DFSALKAILTDENIVKV 78 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H DI + +P+F ++ A+ + + G ++ +L I + K + + Sbjct: 79 LHSCSEDIETFICALDIVPKPIFDSQFAAAIVGMGAS-LGYAKLVEVMLDIQVDKGESRT 137 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 DW A LS EQ +YAA DV++L+ L +K + GR Sbjct: 138 DWLARPLSPEQCRYAAYDVLYLYQLYPTLRDKARAQGR 175 >gi|331647298|ref|ZP_08348392.1| ribonuclease D [Escherichia coli M605] gi|330911610|gb|EGH40120.1| ribonuclease D [Escherichia coli AA86] gi|331044081|gb|EGI16217.1| ribonuclease D [Escherichia coli M605] Length = 371 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNIFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|330000265|ref|ZP_08303673.1| ribonuclease D [Klebsiella sp. MS 92-3] gi|328538027|gb|EGF64198.1| ribonuclease D [Klebsiella sp. MS 92-3] Length = 372 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AA A+A+DTE + +L ++QL G V +I AP + +L+++ Sbjct: 15 AASTASAVALDTEFVRTRTYYPQLGLLQLFDGQ-QVSLIDPLTINDWAP-MRDLLLNQDV 72 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V F + +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 73 TKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKS 130 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + Q + R G A C + R Sbjct: 131 ESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQR 186 >gi|194434924|ref|ZP_03067168.1| ribonuclease D [Shigella dysenteriae 1012] gi|194416812|gb|EDX32937.1| ribonuclease D [Shigella dysenteriae 1012] Length = 375 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 6/180 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKSILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL-MDRAEL 193 + +DW A L++ Q +YAA+DV +L + + + + G A C + M R E+ Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEV 193 >gi|195873245|ref|ZP_02696622.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634367|gb|EDX52719.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 375 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 18 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189 >gi|22126121|ref|NP_669544.1| ribonuclease D [Yersinia pestis KIM 10] gi|45441720|ref|NP_993259.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001] gi|108807454|ref|YP_651370.1| ribonuclease D [Yersinia pestis Antiqua] gi|108811715|ref|YP_647482.1| ribonuclease D [Yersinia pestis Nepal516] gi|145598343|ref|YP_001162419.1| ribonuclease D [Yersinia pestis Pestoides F] gi|167469552|ref|ZP_02334256.1| ribonuclease D [Yersinia pestis FV-1] gi|186895427|ref|YP_001872539.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+] gi|21959080|gb|AAM85795.1|AE013826_7 RNase D [Yersinia pestis KIM 10] gi|45436582|gb|AAS62136.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001] gi|108775363|gb|ABG17882.1| ribonuclease D [Yersinia pestis Nepal516] gi|108779367|gb|ABG13425.1| ribonuclease D [Yersinia pestis Antiqua] gi|145210039|gb|ABP39446.1| ribonuclease D [Yersinia pestis Pestoides F] gi|186698453|gb|ACC89082.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+] Length = 386 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR IA+DTE + +L ++QL G+ +D + I Q +L D Sbjct: 32 ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRALLQDLN 87 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F P+ T++ + + R+ + G + E G+ + K Sbjct: 88 VVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFSGRSLSC--GFAMLVAEFEGVELDK 145 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 146 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 202 >gi|205352517|ref|YP_002226318.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205359829|ref|ZP_02832566.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|207856676|ref|YP_002243327.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272298|emb|CAR37177.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205342684|gb|EDZ29448.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708479|emb|CAR32800.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627575|gb|EGE33918.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 375 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 18 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189 >gi|238754880|ref|ZP_04616230.1| Ribonuclease D [Yersinia ruckeri ATCC 29473] gi|238706891|gb|EEP99258.1| Ribonuclease D [Yersinia ruckeri ATCC 29473] Length = 373 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR+ +A+DTE + +L ++QL G+ +D + I Q +L D+ Sbjct: 19 ARHHAQVALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLPITEWQP----FRELLQDQS 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F P+ T++ + T RT + G + EL G+ + K Sbjct: 75 VVKFLHAGSEDLEVFLNAFQQLPTPMIDTQVLAAFTGRTLSC--GFAMLVAELQGVELDK 132 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A L+++Q YAA+DV +L + Q + GR A C L R Sbjct: 133 SESRTDWLARPLTEKQCDYAAADVFYLLPMAQQLVAATEAAGRMAAAEDECLLLCRR 189 >gi|62180380|ref|YP_216797.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194734944|ref|YP_002114851.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248423|ref|YP_002146207.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197301010|ref|ZP_02662940.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205360221|ref|ZP_02681919.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|62128013|gb|AAX65716.1| RNase D, processes tRNA precursor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194710446|gb|ACF89667.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197212126|gb|ACH49523.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289302|gb|EDY28669.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205350690|gb|EDZ37321.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322714855|gb|EFZ06426.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 375 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 18 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189 >gi|224583693|ref|YP_002637491.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912118|ref|ZP_04655955.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|224468220|gb|ACN46050.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 371 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 14 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185 >gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.] Length = 382 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 8/167 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 I D E + +++C++Q++ + +D I++ K L + D + KIFH Sbjct: 31 IGFDLEADSMHHFPEKVCLLQVATKNCIFVIDTIKL----KELSLLKPIFADNEITKIFH 86 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ LF F + + +F +++ASR + GL+ ++ + + K DW Sbjct: 87 GADYDVRSLFRDFNIEINNLFDSELASRFLGV--KETGLEAVIRHRFNVYLEKKFTKRDW 144 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S L D+ L YAA DV +L L ++L +GR C+ L Sbjct: 145 SKRPLIDDMLHYAADDVRYLVPLYEILEKELNDIGRLFWVKEECDIL 191 >gi|205357371|ref|ZP_02347252.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322073|gb|EDZ09912.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 375 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 18 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189 >gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379] gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379] Length = 382 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVD E L R+++C++Q+S + I +A K+ L L + + H Sbjct: 33 VAVDLEMDSLHHYREKVCLIQISTRTESWLIDPLAL--KDLSPLAAPLGNRDILIVMHGA 90 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +DI L G+ V +F T IASRL + GL LK GI ++K Q +DWS Sbjct: 91 DYDIRSLHRDHGIEVTNLFDTMIASRLL--GITEFGLAALLKARFGIELNKKYQKADWSK 148 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LS E YA +D L L ++L GR Sbjct: 149 RPLSPEMRAYAVADTADLLRLYDMLRDELLEKGR 182 >gi|320085676|emb|CBY95454.1| RNase D, processes tRNA precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 371 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 14 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185 >gi|262404337|ref|ZP_06080892.1| ribonuclease D [Vibrio sp. RC586] gi|262349369|gb|EEY98507.1| ribonuclease D [Vibrio sp. RC586] Length = 381 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 4/168 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 18 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVMDEMTP-FV 75 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 76 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ G Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAG 182 >gi|326623067|gb|EGE29412.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 371 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 14 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185 >gi|26991275|ref|NP_746700.1| ribonuclease D [Pseudomonas putida KT2440] gi|24986330|gb|AAN70164.1|AE016655_9 ribonuclease D [Pseudomonas putida KT2440] Length = 377 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 17/148 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKI 78 +AVDTE + + + ++Q+ GDG +D + I Q L +L D K+ Sbjct: 27 VAVDTEFMRVDTFYPKAGLIQI--GDGQRAFLIDPLLIGNWQP----LADLLEDSAVVKV 80 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQ 135 H D+ VL G +P+F T++A+ Y N G ++E+LGI + K + Sbjct: 81 LHACSEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQEVLGIELPKGE 136 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHAL 163 SDW LS+ Q+ YAA D VHL L Sbjct: 137 TRSDWLQRPLSETQVSYAAEDAVHLAEL 164 >gi|145634613|ref|ZP_01790322.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA] gi|145268158|gb|EDK08153.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA] Length = 362 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P V +L + K Sbjct: 9 AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLANPKVL 66 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R GL ++ L + I K Sbjct: 67 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNVEIDKGAT 125 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 126 RTNWIKRPLSDIQLQYAAGDVWYLLPL 152 >gi|283785541|ref|YP_003365406.1| ribonuclease D [Citrobacter rodentium ICC168] gi|282948995|emb|CBG88598.1| ribonuclease D [Citrobacter rodentium ICC168] Length = 377 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I G + L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGERVALID--PHGISDWSPLKAILRDTAI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKYLHAGSEDLEVFLNAFGELPQPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPIAGKLMAETEAAGWLPAALDECRLMQQR 189 >gi|301327561|ref|ZP_07220781.1| ribonuclease D [Escherichia coli MS 78-1] gi|300845871|gb|EFK73631.1| ribonuclease D [Escherichia coli MS 78-1] Length = 371 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQREYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|113460879|ref|YP_718946.1| ribonuclease D [Haemophilus somnus 129PT] gi|112822922|gb|ABI25011.1| ribonuclease D [Haemophilus somnus 129PT] Length = 381 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 4/172 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ IA+DTE + +L ++QL G+ V +I +P + +L ++K Sbjct: 30 AQQKTVIALDTEFVRTKSFYPKLGLIQLYDGE-QVSLIDPFELSDFSP-FIQLLANQKVT 87 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + F P+ T+I + + + N GL LK + I K Sbjct: 88 KVLHACSEDLEVFQHYFQQLPTPMLDTQIMAAFLQ-HGNSIGLAILLKHYFKLEIDKGIS 146 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSDLATSCCNFL 187 ++W A LSD QL YAA+DV +L L + +KL Q +S + C N L Sbjct: 147 RTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTSWQSAVQNDCENLL 198 >gi|258621252|ref|ZP_05716286.1| ribonuclease D [Vibrio mimicus VM573] gi|258586640|gb|EEW11355.1| ribonuclease D [Vibrio mimicus VM573] Length = 373 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 4/168 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 10 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVINEMTP-FV 67 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 68 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 126 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ G Sbjct: 127 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAG 174 >gi|161503057|ref|YP_001570169.1| ribonuclease D [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864404|gb|ABX21027.1| hypothetical protein SARI_01122 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 371 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 7/177 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEK 74 A R AIA+DTE + +L ++QL G D+ I G + L +L D Sbjct: 14 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDG---ADVALIDPLGITDWSPLKAVLRDTG 70 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISK 133 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K Sbjct: 71 ITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDK 128 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS+ Q +YAA+DV +L + + + + G A C + R Sbjct: 129 SESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185 >gi|325277926|ref|ZP_08143467.1| ribonuclease D [Pseudomonas sp. TJI-51] gi|324096941|gb|EGB95246.1| ribonuclease D [Pseudomonas sp. TJI-51] Length = 377 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 9/144 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTE + + + ++Q+ G I + G N L +L + K+ H Sbjct: 27 VAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLAELLENSGVVKVLHAC 84 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139 D+ VL G +P+F T++A+ Y N G ++E+LGI++ K + SD Sbjct: 85 SEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQEVLGIDLPKGETRSD 140 Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163 W LSD Q+ YAA D VHL L Sbjct: 141 WLQRPLSDTQVSYAAEDAVHLAEL 164 >gi|167035116|ref|YP_001670347.1| ribonuclease D [Pseudomonas putida GB-1] gi|166861604|gb|ABZ00012.1| ribonuclease D [Pseudomonas putida GB-1] Length = 377 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 20/159 (12%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKI 78 +AVDTE + + + ++Q+ GDG +D + I Q L +L D K+ Sbjct: 27 VAVDTEFMRVDTFYPKAGLIQI--GDGQRAFLIDPLLIGDWQP----LADLLEDSGVVKV 80 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQ 135 H D+ VL G +P+F T++A+ Y N G ++++LGI + K + Sbjct: 81 LHACSEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQDVLGIELPKGE 136 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 SDW LS+ Q+ YAA D VHL L FTE RL Sbjct: 137 TRSDWLQRPLSETQVSYAAEDAVHLAEL---FTELRPRL 172 >gi|71898238|ref|ZP_00680412.1| Ribonuclease D [Xylella fastidiosa Ann-1] gi|71731977|gb|EAO34034.1| Ribonuclease D [Xylella fastidiosa Ann-1] Length = 339 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 3/154 (1%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 L +VQ++ D + + + G +A L L KI H D+ Y GV R Sbjct: 15 LALVQIAIEDEILLVDPLVPGMTDALGL--WLAAPNVIKIMHSASEDLIAFKYACGVLPR 72 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 P+F T+I + G + + ++ + + K + SDW L+ QL YAA+DV Sbjct: 73 PLFDTQIGAA-LTGLGGGMGYQKLVAKVTNVELGKGETRSDWMHRPLTPAQLDYAANDVR 131 Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +L L TE+L + RS C L D E Sbjct: 132 YLFVLHDTLTERLAEMSRSAWLEEDCTRLTDNIE 165 >gi|148546540|ref|YP_001266642.1| ribonuclease D [Pseudomonas putida F1] gi|148510598|gb|ABQ77458.1| ribonuclease D [Pseudomonas putida F1] Length = 377 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 9/144 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTE + + + ++Q+ G I + G N L +L D K+ H Sbjct: 27 VAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLADLLEDSGVVKVLHAC 84 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139 D+ VL G +P+F T++A+ Y N G ++E+LGI + K + SD Sbjct: 85 SEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQEVLGIELPKGETRSD 140 Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163 W LS+ Q+ YAA D VHL L Sbjct: 141 WLQRPLSETQVSYAAEDAVHLAEL 164 >gi|307131134|ref|YP_003883150.1| ribonuclease D [Dickeya dadantii 3937] gi|306528663|gb|ADM98593.1| ribonuclease D [Dickeya dadantii 3937] Length = 373 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 7/189 (3%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I EG + A CA A V +A+DTE + +L ++QL GD + +I A + Sbjct: 6 ITTDEG-LSAVCAQACAVSEVALDTEFVRTRTYYPQLGLIQLYDGD-NLSLIDPLAIRDW 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKD 121 AP +L + + K H G D+ V FG P T+I A+ L + + +G Sbjct: 64 AP-FRALLQNPQVTKFLHAGSEDLEVFLNAFGGLPSPFIDTQILAAFLGKPLS--YGFAA 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + + + + K++ +DW A LS++Q QYAA+DV +L + E+ + G + A Sbjct: 121 LVADYRQVALDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARTLVEETRAAGWLEAAL 180 Query: 182 SCCNFLMDR 190 C L R Sbjct: 181 DECLLLCQR 189 >gi|302866117|ref|YP_003834754.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029] gi|315502675|ref|YP_004081562.1| 3'-5' exonuclease [Micromonospora sp. L5] gi|302568976|gb|ADL45178.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029] gi|315409294|gb|ADU07411.1| 3'-5' exonuclease [Micromonospora sp. L5] Length = 439 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 3/113 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+A L G+R R +F T++A+RL + GL ++LLG ++ K Sbjct: 126 EWVLHAASQDLACL-AEVGLRPRRLFDTELAARLA--GFERVGLAALTEQLLGFSLEKHH 182 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++DWS+ L + L YAA DV L LR E+LQR G+S A + L+ Sbjct: 183 SAADWSSRPLPESWLTYAALDVELLVDLRDSLDEELQRQGKSGWAAEEFDALV 235 >gi|313497620|gb|ADR58986.1| Rnd [Pseudomonas putida BIRD-1] Length = 377 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 17/148 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKI 78 +AVDTE + + + ++Q+ GDG +D + I Q L +L D K+ Sbjct: 27 VAVDTEFMRVDTFYPKAGLIQI--GDGQRAFLIDPLLIGNWQP----LADLLEDSGVVKV 80 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQ 135 H D+ VL G +P+F T++A+ Y N G ++E+LGI + K + Sbjct: 81 LHACSEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQEVLGIELPKGE 136 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHAL 163 SDW LS+ Q+ YAA D VHL L Sbjct: 137 TRSDWLQRPLSETQVSYAAEDAVHLAEL 164 >gi|197285028|ref|YP_002150900.1| ribonuclease D [Proteus mirabilis HI4320] gi|194682515|emb|CAR42495.1| ribonuclease D [Proteus mirabilis HI4320] Length = 372 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AA V IA+DTE + + L ++Q+ G + +I + P V +L + Sbjct: 18 AASEVSQIALDTEFVRIRTYYPHLGLIQMYDGK-QISLIDPLTITEWTP-FVELLTNPAV 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V + FG P+ T++ + Y G +++ I + K++ Sbjct: 76 LKYLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GYPISCGFATLVEKYEHIALDKSE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L+++Q QYA+ DV +L L + + Q G D C + +R Sbjct: 135 SRTDWLARPLTEKQCQYASGDVFYLLPLAKKLIAQAQEAGYMDAIVDECEMIAER 189 >gi|238796317|ref|ZP_04639826.1| Ribonuclease D [Yersinia mollaretii ATCC 43969] gi|238719762|gb|EEQ11569.1| Ribonuclease D [Yersinia mollaretii ATCC 43969] Length = 395 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR +A+DTE + +L ++QL G+ +D + I Q +L D Sbjct: 41 ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRELLQDLN 96 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F P+ T++ + + R+ + G + E G+ + K Sbjct: 97 VVKYLHAGSEDLEVFLNAFDRMPTPMIDTQVLAAFSGRSLSC--GFAMLVNEFEGVELDK 154 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 155 SESRTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDECELLCRR 211 >gi|332141837|ref|YP_004427575.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype'] gi|327551859|gb|AEA98577.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype'] Length = 385 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 3/161 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AA+ +A+A+DTE + L ++QL G V I +A N V +L + + Sbjct: 18 AAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAID--NMQPFVALLENTEV 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H D+ F PVF T+IA + + G ++ L I++ K + Sbjct: 76 VKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDMGPSL-GYAKLVELLCEISLDKGE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +DW A L + QL YAA+DV++L Q +Q LG+ Sbjct: 135 SRTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGK 175 >gi|227355430|ref|ZP_03839826.1| ribonuclease D [Proteus mirabilis ATCC 29906] gi|227164417|gb|EEI49301.1| ribonuclease D [Proteus mirabilis ATCC 29906] Length = 399 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AA V IA+DTE + + L ++Q+ G + +I + P V +L + Sbjct: 45 AASEVSQIALDTEFVRIRTYYPHLGLIQMYDGK-QISLIDPLTITEWTP-FVELLTNPAV 102 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V + FG P+ T++ + Y G +++ I + K++ Sbjct: 103 LKYLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GYPISCGFATLVEKYEHIALDKSE 161 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L+++Q QYA+ DV +L L + + Q G D C + +R Sbjct: 162 SRTDWLARPLTEKQCQYASGDVFYLLPLAKKLIAQAQEAGYMDAIVDECEMIAER 216 >gi|89075742|ref|ZP_01162130.1| hypothetical ribonuclease D [Photobacterium sp. SKA34] gi|89048474|gb|EAR54049.1| hypothetical ribonuclease D [Photobacterium sp. SKA34] Length = 363 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 7/177 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73 +AR A+ +DTE + RL ++QL G+ +D I + ++ L +L D+ Sbjct: 6 SARAHSAVMLDTEFVRTRTLYPRLGLIQLFDGEQLSLIDPIEV----EDMEPLWALLRDQ 61 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+ H D+ V + G P+F T++ + + G +KE +G+ + K Sbjct: 62 SVIKVLHACGEDLEVFQHHAGCLPTPMFDTQLMAAFL-GHGISTGFGALVKEYVGVELDK 120 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + ++W A L+ +QL YAA+DV +L L K+++ G + C +M R Sbjct: 121 GEARTNWLARPLTAKQLDYAAADVYYLKPLFETLLAKVEKRGYMEALQQECQSVMQR 177 >gi|323968571|gb|EGB63977.1| ribonuclease D [Escherichia coli M863] gi|327252925|gb|EGE64579.1| ribonuclease D [Escherichia coli STEC_7v] Length = 371 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 9/178 (5%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73 A R AIA+DTE + +L ++QL G+ +D + I + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLVIT----DWSPLKAILRDP 69 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINIS 132 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + Sbjct: 70 SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLD 127 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K++ +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 128 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|270262203|ref|ZP_06190475.1| hypothetical protein SOD_b04110 [Serratia odorifera 4Rx13] gi|270044079|gb|EFA17171.1| hypothetical protein SOD_b04110 [Serratia odorifera 4Rx13] Length = 373 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 7/176 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR IA+DTE + +L ++QL G+ +D + I Q + +L D + Sbjct: 19 ARNHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQWQP----FIDLLSDTQ 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V F P+ T+I + T + G + E + +++ K+ Sbjct: 75 IVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFTGRPLS-CGFATLVTEYMQVDLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L+++Q YAA+DV +L + Q ++ + G + A + C L R Sbjct: 134 ESRTDWLARPLTEKQCVYAAADVFYLLPMAQQLVQETEDAGWTAAAANECLLLCQR 189 >gi|145640347|ref|ZP_01795931.1| ribonuclease D [Haemophilus influenzae R3021] gi|145274933|gb|EDK14795.1| ribonuclease D [Haemophilus influenzae 22.4-21] Length = 380 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P + +L + K Sbjct: 27 AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FIALLANPKVL 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F RP+ T+I +R GL ++ L + I K Sbjct: 85 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNVEIDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170 >gi|238782530|ref|ZP_04626561.1| Ribonuclease D [Yersinia bercovieri ATCC 43970] gi|238716457|gb|EEQ08438.1| Ribonuclease D [Yersinia bercovieri ATCC 43970] Length = 395 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 9/177 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR +A+DTE + +L ++QL G+ +D + I Q +L D Sbjct: 41 ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRELLQDLA 96 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F P+ T++ + + R+ + G + E G+ + K Sbjct: 97 VVKYLHAGSEDLEVFLNAFDRMPTPMIDTQVLAAFSGRSLSC--GFAMLVNEFEGVELDK 154 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 155 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECQLLCRR 211 >gi|258626516|ref|ZP_05721356.1| ribonuclease D [Vibrio mimicus VM603] gi|258581227|gb|EEW06136.1| ribonuclease D [Vibrio mimicus VM603] Length = 385 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 4/168 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 22 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVIDEMTP-FV 79 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 80 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 138 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ G Sbjct: 139 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAG 186 >gi|262171029|ref|ZP_06038707.1| ribonuclease D [Vibrio mimicus MB-451] gi|261892105|gb|EEY38091.1| ribonuclease D [Vibrio mimicus MB-451] Length = 381 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 4/168 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 GD+ C AAR D + +DTE + +L ++Q+ G+ + +I + P V Sbjct: 18 GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVIDEMTP-FV 75 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H D+ V FG P+ T+I + Y G +++ L Sbjct: 76 ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + + K++ +DW A LSD+QL+YAA+DV +L + + E++ G Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAG 182 >gi|323166513|gb|EFZ52276.1| ribonuclease D [Shigella sonnei 53G] Length = 371 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRVFPAIAQDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|213586553|ref|ZP_03368379.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 165 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 14 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHL 160 + +DW A LS+ Q +YAA+DV +L Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYL 155 >gi|74311884|ref|YP_310303.1| ribonuclease D [Shigella sonnei Ss046] gi|73855361|gb|AAZ88068.1| RNase D [Shigella sonnei Ss046] Length = 375 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA DTE + +L ++QL G+ I + G + L +L D Sbjct: 18 AVRVFPAIAQDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 >gi|283832800|ref|ZP_06352541.1| ribonuclease D [Citrobacter youngae ATCC 29220] gi|291072487|gb|EFE10596.1| ribonuclease D [Citrobacter youngae ATCC 29220] Length = 371 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL DG + G + L +L D Sbjct: 14 AVREFPAIALDTEFVRTRTYYPQLGLIQLF--DGKHVALIDPQGITDWSPLRAILRDTAI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFCGRPLS--WGFAAMVEEFTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITTTLMAETEASGWLPAALDECRLMQQR 185 >gi|251789601|ref|YP_003004322.1| ribonuclease D [Dickeya zeae Ech1591] gi|247538222|gb|ACT06843.1| ribonuclease D [Dickeya zeae Ech1591] Length = 373 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 7/189 (3%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I EG + A CA A V +A+DTE + +L ++QL GD + +I A + Sbjct: 6 ITTDEG-LSAVCAQACAVSEVALDTEFVRTRTYYPQLGLIQLYDGD-NLSLIDPLAIRDW 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKD 121 AP +L + + K H G D+ V FG P ++I A+ L + + +G Sbjct: 64 AP-FRALLQNPQITKFLHAGSEDLEVFLNAFGCLPSPFIDSQILAAFLGKPLS--YGFAA 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + + + + K++ +DW A LS++Q QYAA+DV +L + + + G D A Sbjct: 121 LVADYRQVALDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARTLVAETRAAGWLDAAL 180 Query: 182 SCCNFLMDR 190 C L R Sbjct: 181 DECRLLCQR 189 >gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] Length = 576 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 23/165 (13%) Query: 20 VDAIAVDTETLGLMPR------RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 V + +DTET G R +R+ ++ L VD+++ +K +VG Sbjct: 22 VPYLFIDTETTGDRIRLFQVGDEERIFVIDLFDLPEAVDVLKELIAKKG---VVG----- 73 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 H +FD+ + Y G+ F T I S L +H L + LLG + K Sbjct: 74 ------HNLKFDLKFM-YPLGIVPYATFDTMIGSFLLGY--ERHSLSHVAERLLGYTMDK 124 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + Q SDWS L+ +Q++YAA+DV+ + L + EKL LG +D Sbjct: 125 SLQLSDWSRTALTKQQIEYAATDVLVVRELFYKMREKLNALGETD 169 >gi|218548642|ref|YP_002382433.1| ribonuclease D [Escherichia fergusonii ATCC 35469] gi|218356183|emb|CAQ88800.1| ribonuclease D [Escherichia fergusonii ATCC 35469] gi|324113537|gb|EGC07512.1| ribonuclease D [Escherichia fergusonii B253] Length = 375 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 9/178 (5%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73 A R AIA+DTE + +L ++QL G+ +D + I ++ L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLTI----RDWSPLKSVLRDP 73 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINIS 132 K H G D+ V FG +P+ T++ A+ R + G ++E G+ + Sbjct: 74 AITKFLHAGSEDLEVFLNKFGEMPQPLIDTQVLAAFCGRPMS--WGFASMVEEYSGVILD 131 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K++ +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMAETEASGWLPAALDECRLMQMR 189 >gi|325497053|gb|EGC94912.1| ribonuclease D [Escherichia fergusonii ECD227] Length = 375 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 9/178 (5%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73 A R AIA+DTE + +L ++QL G+ +D + I ++ L +L D Sbjct: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLTI----RDWSPLKSVLRDP 73 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINIS 132 K H G D+ V FG +P+ T++ A+ R + G ++E G+ + Sbjct: 74 AITKFLHAGSEDLEVFLNKFGEMPQPLIDTQVLAAFCGRPMS--WGFASMVEEYSGVILD 131 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K++ +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMAETEASGWLPAALDECRLMQMR 189 >gi|304396155|ref|ZP_07378037.1| ribonuclease D [Pantoea sp. aB] gi|304356524|gb|EFM20889.1| ribonuclease D [Pantoea sp. aB] Length = 373 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 7/176 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEK 74 AR A+A+DTE + +L ++QL V D + I ++ + +L D + Sbjct: 19 ARQQAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPLNI----RDWSPFIALLTDTR 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V + FGV P+ T+I + + + G + + + K+ Sbjct: 75 VTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLS-WGFASMVAHFTQVELDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L+ Q +YAA+DV +L + Q + G A S C+ L R Sbjct: 134 ESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGNMAAALSECDNLCQR 189 >gi|325578461|ref|ZP_08148596.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392] gi|325160197|gb|EGC72326.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392] Length = 383 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 3/144 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR A+A+DTE + + +L ++QL G+ V +I + +P V +L D++ Sbjct: 27 ARQQSAVALDTEFMRISTYYPKLGLIQLYDGE-RVSLIDPLSITDFSP-FVELLRDQQVT 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F + + T+I +R + N GL + LGI + K Sbjct: 85 KILHACNEDLLVFLQEFDALPQLMMDTQIMARFL-GFANSAGLAKLVLHYLGIEMDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 ++W LS QLQYAA DV +L Sbjct: 144 RTNWLKRPLSPVQLQYAAGDVWYL 167 >gi|333018685|gb|EGK37978.1| ribonuclease D [Shigella flexneri K-227] Length = 371 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G+ I + G + L +L D Sbjct: 14 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YA +DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAVADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185 >gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 406 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE+ G ++C++Q++ +D ++I N L + D KIFH Sbjct: 29 MSIDTESSGYYTYYPKVCLIQINSNGKNYLIDPLKIT----NLSALGPLFEDPNILKIFH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 + DI L FG + T I+SRL + ++ + +SK +Q S+W Sbjct: 85 SAQDDIKALKRDFGFKFVNTADTMISSRLLSLEQSSLSFV--VEHYHKVTLSKVEQKSNW 142 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 L +QL+YAA D +L ++ L+ E L+R D A S +F+ Sbjct: 143 EIRPLQKQQLKYAALDTAYLESIWLKMEEDLKRRSLYDEAKSEFDFI 189 >gi|268589713|ref|ZP_06123934.1| ribonuclease D [Providencia rettgeri DSM 1131] gi|291314943|gb|EFE55396.1| ribonuclease D [Providencia rettgeri DSM 1131] Length = 373 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 3/168 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + +L ++QL G V +I +P +L + ++ K H G Sbjct: 25 LALDTEFVRTRTYYPQLGLLQLYDGK-QVSLIDPLLMTDFSP-FKALLTNPEQLKFLHAG 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V + F P+ T++ + Y G + E LGI + K++ +DW A Sbjct: 83 SEDLEVFMHDFDCVPEPMIDTQVVAAFL-GYPISCGFASLVAEHLGIELDKSESRTDWLA 141 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 LS++Q YAA+DV++L L EK+ G + A C ++ R Sbjct: 142 RPLSEKQCDYAAADVLYLLPLAEILMEKVTEAGYLEDAKDECQRVVAR 189 >gi|115896423|ref|XP_795972.2| PREDICTED: similar to G protein-coupled receptor [Strongylocentrotus purpuratus] gi|115925241|ref|XP_001183731.1| PREDICTED: similar to G protein-coupled receptor [Strongylocentrotus purpuratus] Length = 976 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 20/189 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVDEKREKI 78 I +D E + L + RL +VQ+S DG D + K +L L + K+ Sbjct: 734 VIGLDCEGVELGREKGRLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKTLEHDSILKV 793 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIA-----SRLTRTYTNQHGLKDNLKELLGINIS- 132 H D L++ FGV+++ VF T IA +L R + Q G K L ELLG S Sbjct: 794 IHACNSDTYSLYHDFGVKLKNVFDTSIAMFTIMEQLNRNHPYQIGYK-ALCELLGEAASH 852 Query: 133 -------KAQQSSD-WSADDLSDEQLQYAASDVVHL-HALRLQFTEKLQRLGRSDLATSC 183 K ++ D W L++E + YAASD + L + L+ L R+ R DL T Sbjct: 853 KDDDFKKKMIETEDFWKIRPLTEEMIYYAASDTLCLVPTVYLKLNGMLTRVWR-DLFTWS 911 Query: 184 CNFLMDRAE 192 C M+R + Sbjct: 912 CKNAMERKQ 920 >gi|90580077|ref|ZP_01235885.1| hypothetical ribonuclease D [Vibrio angustum S14] gi|90438962|gb|EAS64145.1| hypothetical ribonuclease D [Vibrio angustum S14] Length = 375 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 7/177 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73 +AR A+ +DTE + RL ++QL G+ +D + + ++ L +L D+ Sbjct: 18 SARTHTAVMLDTEFVRTRTLYPRLGLIQLFDGEQLSLIDPLEV----EDMEPLWALLRDQ 73 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+ H D+ V + G P+F T++ + + G +KE +G+ + K Sbjct: 74 SVIKVLHACGEDLEVFQHHAGCLPTPMFDTQLMAAFL-GHGISTGFGTLVKEYVGVELDK 132 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + ++W A L+++QL YAA+DV +L L K++ G + C +M R Sbjct: 133 GEARTNWLARPLTEKQLDYAAADVYYLKPLFESLLAKVEERGYMEALQQECESVMHR 189 >gi|237731840|ref|ZP_04562321.1| ribonuclease D [Citrobacter sp. 30_2] gi|226907379|gb|EEH93297.1| ribonuclease D [Citrobacter sp. 30_2] Length = 371 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL DG + G + L +L D Sbjct: 14 AVREFPAIALDTEFVRTRTYYPQLGLIQLF--DGKHVALIDPQGITDWSPLRDILRDTAI 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FG +P+ T+I A+ R + G ++E G+ + K+ Sbjct: 72 TKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFCGRPMS--WGFAAMVEEFTGVALDKS 129 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L++ Q +YAA+DV +L + + + + G A C + R Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITTKLMVETEASGWLPAALDECRLMQQR 185 >gi|145638698|ref|ZP_01794307.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII] gi|145272293|gb|EDK12201.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII] gi|309750190|gb|ADO80174.1| Ribonuclease D [Haemophilus influenzae R2866] Length = 380 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P + +L + K Sbjct: 27 AQQQSAVALDTEFMRVSTYFPKLGLIQLYDGEH-VSLIDPLAITDFSP-FIALLANPKVL 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V F RP+ T+I +R T+ GL ++ L + I K Sbjct: 85 KVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNVEIDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LS+ QLQYAA DV +L L Sbjct: 144 RTNWIKRPLSNIQLQYAAGDVWYLLPL 170 >gi|239992935|ref|ZP_04713459.1| ribonuclease D [Alteromonas macleodii ATCC 27126] Length = 385 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 3/176 (1%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 AA+ +A+A+DTE + L ++QL G V I +A N + ++ + + Sbjct: 17 TAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAID--NMQPFIDLMENTE 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+ H DI F PVF T++A + + G ++ L I++ K Sbjct: 75 VVKVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDMGPS-LGYAKLVELLCDISLDKG 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L + QL YAA+DV++L Q K+Q G+ L+D+ Sbjct: 134 ESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEAGKVHWIYQEIALLVDK 189 >gi|118590153|ref|ZP_01547556.1| probable ribonuclease d protein [Stappia aggregata IAM 12614] gi|118437125|gb|EAV43763.1| probable ribonuclease d protein [Stappia aggregata IAM 12614] Length = 394 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + VDTE L +LC++Q++ D + ++ G P ++ D K+FH Sbjct: 21 DYVTVDTEFLRETTFWPKLCVIQMAGPDMAFIVDALSEGLDLEP-FFELMRDGSVTKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++++ + P+F T++A+ + + + + ++ G I K+ + +DW Sbjct: 80 AARQDIEIIYHLGELIPAPLFDTQVAAMVC-GFGDSISYDQLVYKVTGARIDKSSRFTDW 138 Query: 141 SADDLSDEQLQYAASDVVHL 160 + L+ +QL YA +DV HL Sbjct: 139 ARRPLTAKQLDYALADVTHL 158 >gi|303253729|ref|ZP_07339866.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247590|ref|ZP_07529633.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647454|gb|EFL77673.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855860|gb|EFM88020.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 371 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 3/171 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+A+DTE + +L ++QL GD TV +I +P +G+L + K+ H Sbjct: 28 AVALDTEFIRTRSYYPKLGLIQLFDGD-TVSLIDPNPISDFSP-FIGLLTCQNVVKVLHA 85 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ V + F P+ T+I + + G + L + + K +DW Sbjct: 86 CSEDLEVFQHLFKQLPTPLADTQIMAGFAGVGISL-GFAKLVAHYLNVELDKGASRTDWL 144 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 A L++EQLQYAA+DV +L + + L + C +L+++ E Sbjct: 145 ARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQNAVEQECQYLLNKRE 195 >gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51] gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 578 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 4/144 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVDTET GL P +L ++QL+ D V +I + L+ ++ KIF Sbjct: 25 IAVDTETTGLDPHTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAILSTSGIKIFQNA 84 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKAQQSSDW 140 +FD+ L + +F T +AS+L R Q LK + L ++ K +Q+S+W Sbjct: 85 KFDLQFLM-ALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLNEDLDKEEQTSNW 143 Query: 141 SADDLSDEQLQYAASDVVHLHALR 164 +L++ Q+ YAA D L LR Sbjct: 144 QG-ELTESQILYAARDAEILLRLR 166 >gi|260598272|ref|YP_003210843.1| ribonuclease D [Cronobacter turicensis z3032] gi|260217449|emb|CBA31565.1| Ribonuclease D [Cronobacter turicensis z3032] Length = 409 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR A+A+DTE + +L ++QL G+ V +I + AP +L D+ Sbjct: 55 ARTQRALALDTEFVRTRTYYPQLGLIQLYDGE-NVALIDPLTITEWAP-FQALLQDQNIT 112 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V FG+ P T++ + + G ++ G+ + K++ Sbjct: 113 KFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFV-GHPLSCGFATLVEHHTGVALDKSES 171 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L++ Q YAA+DV +L + + E+++ G A + C + R Sbjct: 172 RTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAINECRLMTQR 225 >gi|260776343|ref|ZP_05885238.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450] gi|260607566|gb|EEX33831.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450] Length = 371 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 12/178 (6%) Query: 15 CA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 CA AR D + +DTE + +L ++QL G+ I A V +L D Sbjct: 16 CAQARNADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPTVIDDMTA--FVHLLKDT 73 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGI 129 K+ H D+ V +FG P+ T++ + HGL L LG+ Sbjct: 74 SVLKVLHACGEDLEVFNNSFGCLPYPMVDTQLMAAFL-----GHGLSTGFASLVESYLGV 128 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + K++ +DW A L+D+QL YAA+DV +L L + E++ + G + A + L Sbjct: 129 ELDKSESRTDWLARPLTDKQLDYAAADVHYLLPLYEKLLEEITQAGWWEAAQQESDLL 186 >gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] Length = 583 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 4/144 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVDTET GL P +L ++QL+ D V +I + L+ ++ K+F Sbjct: 30 IAVDTETTGLDPHTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAILSTSGVKVFQNA 89 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKAQQSSDW 140 +FD+ L + +F T +AS+L R Q LK + L ++ K +Q+S+W Sbjct: 90 KFDLQFLM-ALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLNEDLDKEEQTSNW 148 Query: 141 SADDLSDEQLQYAASDVVHLHALR 164 +L++ Q+ YAA D L LR Sbjct: 149 QG-ELTESQILYAARDAEILLRLR 171 >gi|156973677|ref|YP_001444584.1| ribonuclease D [Vibrio harveyi ATCC BAA-1116] gi|156525271|gb|ABU70357.1| hypothetical protein VIBHAR_01380 [Vibrio harveyi ATCC BAA-1116] Length = 382 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66 D+ CA AR D + +DTE + + +L ++QL G +D + + + Sbjct: 21 DLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDPTELT----DMTSF 76 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122 V +L D K+ H D+ V FG P+ T++ + HGL Sbjct: 77 VELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 131 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 132 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAGWWEAVQQ 191 Query: 183 CCNFLMDR 190 + L+ + Sbjct: 192 ESDLLVSK 199 >gi|308187080|ref|YP_003931211.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1] gi|308057590|gb|ADO09762.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1] Length = 373 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 7/176 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEK 74 AR A+A+DTE + +L ++QL V D + I ++ + +L D Sbjct: 19 ARQHAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPLNI----RDWSPFIALLTDTS 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V + FGV P+ T+I + + + G + + + K+ Sbjct: 75 VTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLSW-GFASMVAHFTQVELDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A L+ Q +YAA+DV +L + Q + G A S C+ L R Sbjct: 134 ESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGNMAAALSECDNLCQR 189 >gi|104783019|ref|YP_609517.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48] gi|95112006|emb|CAK16733.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48] Length = 377 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 17/153 (11%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDE 73 R + +A+DTE + + + +VQ+ GDG +D + I+ Q L +L D Sbjct: 22 RKLPFVALDTEFMRVDTFYPKAGLVQI--GDGNQAFLIDPLLISDWQP----LADLLDDS 75 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130 K+ H D+ VL G +P+F T++A+ Y N G ++E+LG+ Sbjct: 76 GVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAA----GYLNIGFSMGYSRLVQEVLGLE 131 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + K + SDW LS+ Q+ YAA D VHL L Sbjct: 132 LPKGETRSDWLQRPLSETQVSYAAEDAVHLAEL 164 >gi|163803649|ref|ZP_02197513.1| cell division topological specificity factor MinE [Vibrio sp. AND4] gi|159172559|gb|EDP57420.1| cell division topological specificity factor MinE [Vibrio sp. AND4] Length = 372 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 16/188 (8%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66 D+ CA AR D + +DTE + + +L ++QL G +D + + + Sbjct: 11 DLEEVCALAREADVVMLDTEFVRIRTFYPQLGLIQLFDGKQLSLIDPTELT----DMTSF 66 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122 V +L D K+ H D+ V FG P+ T++ + HGL Sbjct: 67 VELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ + G + Sbjct: 122 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNQAGWWEAVQQ 181 Query: 183 CCNFLMDR 190 + L+ + Sbjct: 182 ESDLLVSK 189 >gi|269960729|ref|ZP_06175101.1| ribonuclease D [Vibrio harveyi 1DA3] gi|269834806|gb|EEZ88893.1| ribonuclease D [Vibrio harveyi 1DA3] Length = 372 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66 D+ CA AR D + +DTE + + +L ++QL G +D + + + Sbjct: 11 DLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDPTELT----DMTSF 66 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122 V +L D K+ H D+ V FG P+ T++ + HGL Sbjct: 67 VELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 122 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAGWWEAVQQ 181 Query: 183 CCNFLMDR 190 + L+ + Sbjct: 182 ESDLLVSK 189 >gi|226329911|ref|ZP_03805429.1| hypothetical protein PROPEN_03824 [Proteus penneri ATCC 35198] gi|225200706|gb|EEG83060.1| hypothetical protein PROPEN_03824 [Proteus penneri ATCC 35198] Length = 372 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AA IA+DTE + + L ++Q+ G I +A K+ V +L ++ Sbjct: 18 AASEASQIALDTEFVRIRTYYPHLGLIQMYDGKQISLIDPLAI--KDWTPFVELLTNQGI 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V + FG P+ T++ + + G +++ + + K++ Sbjct: 76 MKFLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GHPISCGFATLVEKYENVALDKSE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L+++Q QYA+ DV +L L + ++ + G D C + +R Sbjct: 135 SRTDWLARPLTEKQCQYASGDVFYLLPLAEKLIKEAEEAGYMDAIADECEMIAER 189 >gi|114775667|ref|ZP_01451235.1| ribonuclease D [Mariprofundus ferrooxydans PV-1] gi|114553778|gb|EAU56159.1| ribonuclease D [Mariprofundus ferrooxydans PV-1] Length = 398 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH R DI ++F G P+F T++A+ L Y Q G + ++ + + K + Sbjct: 80 KVFHAARQDIEIIFNEAGGLPLPLFDTQVAAALL-GYGQQVGFGNLVQRITKKLLPKGES 138 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DW A L+ +Q+ YAA DV+ L + E+L+ R+ Sbjct: 139 FTDWKARPLTKKQMAYAADDVIWLMPVFQHLKERLEAAKRT 179 >gi|145632638|ref|ZP_01788372.1| ribonuclease D [Haemophilus influenzae 3655] gi|144986833|gb|EDJ93385.1| ribonuclease D [Haemophilus influenzae 3655] gi|309972450|gb|ADO95651.1| Ribonuclease D [Haemophilus influenzae R2846] Length = 380 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 3/147 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ V +I A +P + +L + K Sbjct: 27 AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FIALLANPKVL 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ V F P+ T+I +R + GL ++ L I I K Sbjct: 85 KILHSCSEDLLVFLQEFDQLPHPMIDTQIMARFIGLGASA-GLAKLAQQYLNIEIDKGAT 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163 ++W LSD QLQYAA DV +L L Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170 >gi|119487547|ref|ZP_01621157.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106] gi|119455716|gb|EAW36852.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106] Length = 309 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 15/151 (9%) Query: 62 NAPNLVGMLVDE-----KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--- 113 + P L + ++E EK+FH +D+ +L + + V CT + ++ Y Sbjct: 62 DQPELTTLFIEEIMANPAIEKVFHNANYDLKLLG---KKQSKNVTCTLVMAKKIPYYLLP 118 Query: 114 TNQHGLKDNLKELLG--INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + LK L LG NI K +QSSDW L+++QL+YA DVV+L + Q KL Sbjct: 119 VPNYQLK-TLATQLGDFTNIDKQEQSSDWGQRPLTEKQLEYAQMDVVYLAQIH-QCLLKL 176 Query: 172 QRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 Q L D T N L R + W+ +D Sbjct: 177 QPLASPDPTTEDLNKLATRYQEIAHDWKQLD 207 >gi|330504002|ref|YP_004380871.1| ribonuclease D [Pseudomonas mendocina NK-01] gi|328918288|gb|AEB59119.1| ribonuclease D [Pseudomonas mendocina NK-01] Length = 377 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 24/157 (15%) Query: 15 CAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIA-----AGQKNAPNL 66 CAA + + +A+DTE + + ++Q+S GDG +D +RI+ A APN+ Sbjct: 18 CAAWQALPFVALDTEFMRVDTFYPIAGLLQVSGGDGAYLIDPLRISDWRPFAALLEAPNV 77 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNL 123 V K+ H D+ V G P+F T++A+ Y N G + Sbjct: 78 V---------KVLHSCSEDLEVFLRLSGSLPAPLFDTQLAA----GYLNLGFSMGYSRLV 124 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 + LL I + K + SDW LS+ Q++YAA DV+HL Sbjct: 125 QALLDIELPKGETRSDWLQRPLSELQVRYAAEDVLHL 161 >gi|304389402|ref|ZP_07371365.1| ribonuclease D [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327212|gb|EFL94447.1| ribonuclease D [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 406 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LV 71 E A +A+DTE G +VQL G GT I IA P+L + Sbjct: 32 ELVADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAF-----PDLEPLSRA 86 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 K E I H D+ L G+R + +F T++A++L GL L+++LGI++ Sbjct: 87 IGKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNF--QGFGLAAVLEQVLGISL 143 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +K ++DWS L + YAA DV +L LR +LQ + D A +FL+D Sbjct: 144 AKEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201 >gi|32035264|ref|ZP_00135282.1| COG0349: Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208098|ref|YP_001053323.1| ribonuclease D [Actinobacillus pleuropneumoniae L20] gi|190149931|ref|YP_001968456.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307249819|ref|ZP_07531795.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307261076|ref|ZP_07542755.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263258|ref|ZP_07544876.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096890|gb|ABN73718.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915062|gb|ACE61314.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306858121|gb|EFM90201.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306869208|gb|EFN01006.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871320|gb|EFN03046.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 371 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 3/171 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+A+DTE + +L ++QL GD TV +I + +P +G+L + K+ H Sbjct: 28 AVALDTEFIRTRSYYPKLGLIQLFDGD-TVSLIDPNSISDFSP-FIGLLTCQNVVKVLHA 85 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ V + F P+ T+I + + G + L + + K +DW Sbjct: 86 CSEDLEVFQHLFKQLPTPLADTQIMAGFAGGGISL-GFAKLVAHYLNVELDKGASRTDWL 144 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 A L++EQLQYAA+DV +L + + L + C +L+ + E Sbjct: 145 ARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQNAVEQECRYLLSKRE 195 >gi|127513115|ref|YP_001094312.1| ribonuclease D [Shewanella loihica PV-4] gi|126638410|gb|ABO24053.1| ribonuclease D [Shewanella loihica PV-4] Length = 368 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 21/168 (12%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------PNLVGML 70 R + +DTE + +L ++Q+ G+ I +A +A +++ +L Sbjct: 20 RQAKVLMLDTEFVRTRTYYAKLGLIQVYDGETLALIDPVAVSDLSAFWALLERDDMISVL 79 Query: 71 --VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E E + YGR VLF + ++ FC + + G ++ LG Sbjct: 80 HSCSEDLEVLARYGRCQPKVLFDS---QIAAAFCG---------WGHGMGYAKLVEHCLG 127 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + + K + +DW LSD QLQYAA+DV +L+ L Q EKLQ GR Sbjct: 128 VQLDKGESRTDWMKRPLSDAQLQYAANDVDYLYRLYPQLLEKLQESGR 175 >gi|78485923|ref|YP_391848.1| 3'-5' exonuclease [Thiomicrospira crunogena XCL-2] gi|78364209|gb|ABB42174.1| ribonuclease D [Thiomicrospira crunogena XCL-2] Length = 385 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 7/167 (4%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D+ A C + IA+DTE + L ++Q+ DG II A + + Sbjct: 8 QQADLDAFCELLKTCPWIALDTEFVRTDTYFSILSLIQIQTHDGQAAIIDPLAIE-DLTA 66 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L ++ + K+FH R DI VL+ G ++ T+IA L + + GL +K Sbjct: 67 LWSIISNPNVRKVFHSARQDIEVLYQVSGQMPISIYDTQIAC-LFLQHGDLAGLARVVKA 125 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L + K Q ++W L+D+QL+YA +DV +L L EKLQ Sbjct: 126 ELNFTLEKDQTRTNWQQRPLTDKQLEYAINDVRYLAPLY----EKLQ 168 >gi|170723061|ref|YP_001750749.1| ribonuclease D [Pseudomonas putida W619] gi|169761064|gb|ACA74380.1| ribonuclease D [Pseudomonas putida W619] Length = 377 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 17/153 (11%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDE 73 R + +A+DTE + + + ++Q+ GDG +D + I Q L +L D Sbjct: 22 RTLPFVALDTEFMRVDTFYPKAGLIQI--GDGERAYLIDPLLIVDWQP----LGELLEDA 75 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130 K+ H D+ VL G +P+F T++A+ Y N G ++E+LG+ Sbjct: 76 GVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQEVLGLE 131 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + K + SDW LSD Q+ YAA D VHL L Sbjct: 132 LPKGETRSDWLQRPLSDTQVSYAAEDAVHLAEL 164 >gi|298346894|ref|YP_003719581.1| ribonuclease D [Mobiluncus curtisii ATCC 43063] gi|298236955|gb|ADI68087.1| ribonuclease D [Mobiluncus curtisii ATCC 43063] Length = 406 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LV 71 E A +A+DTE G +VQL G GT I IA P+L + Sbjct: 32 ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAF-----PDLEPLSRA 86 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 K E I H D+ L G+R + +F T++A++L GL L+++LGI++ Sbjct: 87 IGKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNF--QGFGLAAVLEQVLGISL 143 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +K ++DWS L + YAA DV +L LR +LQ + D A +FL+D Sbjct: 144 AKEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201 >gi|300723126|ref|YP_003712424.1| RNase D, processes tRNA [Xenorhabdus nematophila ATCC 19061] gi|297629641|emb|CBJ90244.1| RNase D, processes tRNA precursor [Xenorhabdus nematophila ATCC 19061] Length = 379 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 7/170 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IA+DTE + +L ++QL G+ +D + I+ Q L +LVD K+ H Sbjct: 28 IALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLEISQWQP----LKALLVDPDVLKLIH 83 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 G D+ V +F P+ T++ + + G + E L + + K++ +DW Sbjct: 84 AGSEDLEVFGNSFQCLPTPMIDTQVLAAFI-GHPISCGFATLVAEYLHVELDKSESRTDW 142 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 A LS +Q +YAA+DV +L L +K ++ G D A + + R Sbjct: 143 LARPLSRKQCEYAAADVYYLLPLADILLKKTEQAGYFDAAKDESDLIAQR 192 >gi|221134772|ref|ZP_03561075.1| ribonuclease D [Glaciecola sp. HTCC2999] Length = 382 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 5/151 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHY 81 IAVDTE + + +VQ+ G VDI I + L ++ + + K+ H Sbjct: 27 IAVDTEFVRTRTFYPHIGLVQIYDG---VDIALIDPIAIDDLSPLSQLMTNPQVIKVLHA 83 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ + GV P+F T++A++L N G ++ L I + K + +DW Sbjct: 84 CSEDLETFEFALGVMPEPLFDTQVAAQLA-GLGNSVGYGRLVELLQDITLEKGESRTDWI 142 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 LS EQL YAA DV++L + EKL+ Sbjct: 143 RRPLSPEQLIYAAEDVLYLLPCYFKLAEKLE 173 >gi|315656649|ref|ZP_07909536.1| ribonuclease D [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492604|gb|EFU82208.1| ribonuclease D [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 406 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LV 71 E A +A+DTE G +VQL G GT I IA P+L + Sbjct: 32 ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAF-----PDLEPLSRA 86 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 K E I H D+ L G+R + +F T++A++L GL L+++LGI++ Sbjct: 87 IGKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNF--QGFGLAAVLEQVLGISL 143 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +K ++DWS L + YAA DV +L LR +LQ + D A +FL+D Sbjct: 144 AKEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201 >gi|315655438|ref|ZP_07908338.1| ribonuclease D [Mobiluncus curtisii ATCC 51333] gi|315490378|gb|EFU80003.1| ribonuclease D [Mobiluncus curtisii ATCC 51333] Length = 406 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LV 71 E A +A+DTE G +VQL G GT I IA P+L + Sbjct: 32 ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAF-----PDLEPLSRA 86 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 K E I H D+ L G+R + +F T++A++L GL L+++LGI++ Sbjct: 87 IGKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNF--QGFGLAAVLEQVLGISL 143 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +K ++DWS L + YAA DV +L LR +LQ + D A +FL+D Sbjct: 144 AKEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201 >gi|37679238|ref|NP_933847.1| ribonuclease D [Vibrio vulnificus YJ016] gi|37197981|dbj|BAC93818.1| ribonuclease D [Vibrio vulnificus YJ016] Length = 390 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 12/171 (7%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ C+ AR D + +DTE + +L ++QL GD I +A Sbjct: 30 DLARVCSKAREADVVMLDTEFVRTRTYYPQLGLIQLFDGDSLSLIDPTVLTDMSA--FTE 87 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL-- 126 +L D K+ H D+ V FG P+ T+I + HGL L Sbjct: 88 LLNDASVMKVLHACGEDLEVFHNAFGAMPVPMVDTQIMAAFL-----GHGLSTGFAALVE 142 Query: 127 --LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L + + K++ +DW A LSD+QL+YAA+DV +L L EK+ G Sbjct: 143 QYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMAAG 193 >gi|307256641|ref|ZP_07538420.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864689|gb|EFM96593.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 371 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 3/171 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+A+DTE + +L ++QL GD TV +I +P +G+L + K+ H Sbjct: 28 AVALDTEFIRTRSYYPKLGLIQLFDGD-TVSLIDPNPISDFSP-FIGLLTCQNVVKVLHA 85 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ V + F P+ T+I + + G + L + + K +DW Sbjct: 86 CSEDLEVFQHLFKQLPTPLADTQIMAGFAGGGISL-GFAKLVAHYLNVELDKGASRTDWL 144 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 A L++EQLQYAA+DV +L + + L + C +L+ + E Sbjct: 145 ARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQNAVEQECRYLLSKRE 195 >gi|90411623|ref|ZP_01219633.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK] gi|90327513|gb|EAS43866.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK] Length = 374 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR + +DTE + +L ++Q+ GD V I I ++ +L D+ Sbjct: 19 ARTYSVVMLDTEFVRTRTLYPKLGLIQMFDGDNLVLIDPIEI--EDLTPFWDLLRDQSVI 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + G P+ T++ + + G + E +G+++ K + Sbjct: 77 KVLHACGEDLEVFQHHAGCLPTPMIDTQLMAAFL-GHGVSAGFGSLVSEYVGVDLEKGEA 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W A L+D+QL YAA+DV +L L EK++ G D C LM + Sbjct: 136 RTNWLARPLTDKQLDYAAADVFYLLPLYETLLEKVKAKGWMDALELECTALMQK 189 >gi|91228923|ref|ZP_01262822.1| ribonuclease D [Vibrio alginolyticus 12G01] gi|91187531|gb|EAS73864.1| ribonuclease D [Vibrio alginolyticus 12G01] Length = 277 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 11/163 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + + +L ++QL G+ + +I P V +L D Sbjct: 32 AREADVVMLDTEFVRIRTFYPQLGLIQLFDGN-RLSLIDPTELTDMTP-FVALLKDTSVL 89 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL----KELLGINIS 132 K+ H D+ V FG P+ T++ + HGL +E LG+ + Sbjct: 90 KVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFASLVEEYLGVELD 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 K++ +DW A L+ +QL YAA+DV +L L + +K+ + G Sbjct: 145 KSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAG 187 >gi|269138811|ref|YP_003295512.1| ribonuclease D [Edwardsiella tarda EIB202] gi|267984472|gb|ACY84301.1| ribonuclease D [Edwardsiella tarda EIB202] gi|304558803|gb|ADM41467.1| Ribonuclease D [Edwardsiella tarda FL6-60] Length = 371 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IA+DTE + +L +VQL G+ +D + I+ Q V +L + + K+ H Sbjct: 26 IALDTEFVRTRTYYPQLGLVQLYDGETLSLIDPLPISDWQP----FVDLLRNPQVVKLLH 81 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSSD 139 G D+ V + F +P+ T+I + T R ++ G + L +++ K++ +D Sbjct: 82 AGSEDLEVFLHDFQTLPQPLIDTQILAAFTGRPLSS--GFAAMVSAYLQVDLDKSESRTD 139 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 W A LS+ Q YAA+DV +L + + +++ G A C L R Sbjct: 140 WLARPLSERQCDYAAADVYYLLPMAHKLLAEVEACGWLPAALDECQALCRR 190 >gi|212711905|ref|ZP_03320033.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM 30120] gi|212685427|gb|EEB44955.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM 30120] Length = 373 Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + +L ++QL G V +I +P +L + + K H G Sbjct: 25 LALDTEFVRTRTYYPQLGLLQLYDGK-QVSLIDPLLMTDFSP-FKALLTNPNQLKFLHAG 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V + FG P+ T++ + Y G + E LGI + K++ +DW A Sbjct: 83 SEDLEVFMHDFGCVPEPMIDTQVLAAFL-GYPISCGFATLVAEHLGIELDKSESRTDWLA 141 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 LS++Q YA +DV++L L EK+ G Sbjct: 142 RPLSEKQCDYATADVLYLLPLAKILMEKVSEEG 174 >gi|254821715|ref|ZP_05226716.1| ribonuclease D [Mycobacterium intracellulare ATCC 13950] Length = 430 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 5/194 (2%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61 ++ V+E + AE R AVD E +R ++Q+ G GTV I ++ G+ Sbjct: 35 SVSVYEIEAAAERLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGSGTVLIDPVSHGRD 94 Query: 62 NAPNLVGML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L + V E I H D+ L G+R ++ T++A RL + L Sbjct: 95 PLEALRPVAEVLGTDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFERVNLA 151 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ LLG ++K ++DWS L E L YAA DV L LR E L G++D A Sbjct: 152 TMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIAEVLAGQGKTDWA 211 Query: 181 TSCCNFLMDRAELD 194 ++L D D Sbjct: 212 AQEFDYLRDTGSKD 225 >gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana] Length = 578 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 10/168 (5%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDI--IRIAAGQKNAPNLVGMLVDE 73 R V+ AVD E + C++Q+S D VD +RI G P L + D Sbjct: 277 RSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIG----PYLREIFKDP 332 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K++K+ H DI L FG+ V +F T ASR+ N L+ L+ G+ +K Sbjct: 333 KKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERN--SLEFLLQHFCGVTANK 390 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 Q++DW L +E +YA D +L + +LQR+ + D T Sbjct: 391 EYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHT 438 >gi|165976032|ref|YP_001651625.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303249665|ref|ZP_07335870.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307245476|ref|ZP_07527563.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307252170|ref|ZP_07534068.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254430|ref|ZP_07536267.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258890|ref|ZP_07540621.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|165876133|gb|ABY69181.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302651477|gb|EFL81628.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853535|gb|EFM85753.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860314|gb|EFM92329.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862571|gb|EFM94528.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866914|gb|EFM98771.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 371 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 3/171 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+A+DTE + +L ++QL GD TV +I +P +G+L + K+ H Sbjct: 28 AVALDTEFIRTRSYYPKLGLIQLFDGD-TVSLIDPNPISDFSP-FIGLLTCQNVVKVLHA 85 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ V + F P+ T+I + + G + L + + K +DW Sbjct: 86 CSEDLEVFQHLFKQLPTPLADTQIMAGFAGGGISL-GFAKLVAHYLNVELDKGASRTDWL 144 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 A L++EQLQYAA+DV +L + + L + C +L+ + E Sbjct: 145 ARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQNAVEQECRYLLSKRE 195 >gi|262193925|ref|YP_003265134.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365] gi|262077272|gb|ACY13241.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365] Length = 925 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 5/135 (3%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 LC+VQL+ + TV +I A P + +L KI H +F+ +V F G+ + Sbjct: 791 LCLVQLAAPEYTV-VIDARAVDDLGP-VSELLASRAVVKIIHNAQFERSV-FRKLGMDIE 847 Query: 99 PVFCT-KIASRL-TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 VF T K++ RL R HGL LG + K +Q SDW+ L+ QL YAA D Sbjct: 848 NVFDTLKVSRRLRGRKREGGHGLGAVCARELGRELDKHEQRSDWTQRPLTQRQLDYAALD 907 Query: 157 VVHLHALRLQFTEKL 171 L AL +FT +L Sbjct: 908 AEVLLALHERFTREL 922 >gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB] gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB] Length = 339 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 6/160 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I++DTE + R++LC+VQ+ T + + L D + K+ H G Sbjct: 78 ISLDTEYDSMHYFREKLCLVQVRASKRTY--VFDPFNGIDLQFLRPYFADPRLLKVTHAG 135 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDW 140 DI +L +G R +F T A+ + + L +++ LG+ I K + Q S W Sbjct: 136 DNDIRILKRDYGFEFRNIFDTHRAAHMLGS--QYLALSSIIEQYLGVEIEKTKKMQRSKW 193 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 A LS+ QL+YA D +L L EKL G + A Sbjct: 194 EARPLSEGQLRYAVQDTAYLADLYRHLNEKLSLKGMQERA 233 >gi|119512751|ref|ZP_01631822.1| 3'-5' exonuclease [Nodularia spumigena CCY9414] gi|119462619|gb|EAW43585.1| 3'-5' exonuclease [Nodularia spumigena CCY9414] Length = 306 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 18/178 (10%) Query: 17 ARYVDA--IAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVG---- 68 A Y +A + +DTE R RL ++Q+ P D + D + + N P++VG Sbjct: 15 AEYTNAKTLWIDTEVADYKSRNPRLSLIQVLDDPTDMSGDRVNLL-DVLNQPDVVGEFIE 73 Query: 69 -MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTN--QHGLKDNLK 124 ++++ + EK+FH +D+ L R + + CT +IA ++ + LK Sbjct: 74 QIMINPEIEKVFHNANYDLKFLG---KKRAKNITCTLEIAQKIPYYILPLPNYQLKTLAT 130 Query: 125 ELLGIN-ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L N I K +QSSDW L++ Q++YA D ++L + LQ E LQ D T Sbjct: 131 ALCRFNYIDKQEQSSDWGRRPLTEGQIEYAYLDCIYLAQVHLQLLE-LQVASNPDPKT 187 >gi|119476222|ref|ZP_01616573.1| ribonuclease D [marine gamma proteobacterium HTCC2143] gi|119450086|gb|EAW31321.1| ribonuclease D [marine gamma proteobacterium HTCC2143] Length = 384 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 15/178 (8%) Query: 18 RYVDAIAVDTETLGLMPRRDRL----CIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLV 71 ++ +A+DTE + R D ++Q+S G G +D + I + L +L Sbjct: 30 QHAAVLALDTEFI----RTDTFYPIGALLQISEGTGCFLIDPLSI----DDFSPLTALLT 81 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D K+ H D+ V F V +P+ T+IA+ L Y G + + LL I++ Sbjct: 82 DPAIVKVLHSCSEDLEVFERLFQVLPQPLIDTQIAAGLD-GYGFSLGYQKMTEALLQIHV 140 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +K + S+W L++ Q+ YAA DV +L + Q + L+ GR C+ L + Sbjct: 141 AKGETRSNWLQRPLTESQIHYAALDVAYLPEMYQQLKQSLESKGRWQWLLDECSPLTN 198 >gi|269103055|ref|ZP_06155752.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761] gi|268162953|gb|EEZ41449.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761] Length = 382 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 4/187 (2%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TI D+ C AA AI +DTE + +L ++QL G + +I A + Sbjct: 4 TIITTTADLKMVCQAASSAPAIMLDTEFVRTRTLYPKLGLIQLFDGK-QLSLIDPLAIED 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 P L +L D+ K+ H D+ V + G P+ T++ + + G Sbjct: 63 MEP-LWDLLRDQSVMKVLHACGEDLEVFQHHAGCLPVPMLDTQLMAAFL-GHGVSTGFGA 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +KE +G+ + K + ++W A L+D QL YAA+DV +L L EK+ G Sbjct: 121 LVKEYVGVELDKGEARTNWLARPLTDRQLNYAAADVFYLLPLYETLLEKVGAAGYCKALE 180 Query: 182 SCCNFLM 188 CN M Sbjct: 181 QECNATM 187 >gi|163752438|ref|ZP_02159629.1| ribonuclease D [Shewanella benthica KT99] gi|161327662|gb|EDP98855.1| ribonuclease D [Shewanella benthica KT99] Length = 380 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 7/161 (4%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R D + +DTE + RL ++Q G I +A N G+L + Sbjct: 29 RQSDLLVLDTEFVRTRTFYARLGLIQAYDGKTLALIDPVAVN--NLSEFWGLLAEPGITT 86 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISKAQ 135 + H D+ V + +F ++IA+ L HGL +++ L I++ K + Sbjct: 87 VLHSCSEDLEVFARNGHCQPANLFDSQIAAALCGL---GHGLGYAKLVEQTLDISLDKGE 143 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +DW LS+ QL YAA+DV +L+ L Q EKLQ+ GR Sbjct: 144 SRTDWMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQQQGR 184 >gi|320157018|ref|YP_004189397.1| ribonuclease D [Vibrio vulnificus MO6-24/O] gi|319932330|gb|ADV87194.1| ribonuclease D [Vibrio vulnificus MO6-24/O] Length = 390 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 11/163 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + +L ++QL GD T+ +I + +L D Sbjct: 38 AREADVVMLDTEFVRTRTYYPQLGLIQLFDGD-TLSLIDPTV-LTDMSAFTELLNDASVM 95 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINIS 132 K+ H D+ V FG P+ T+I + HGL L L + + Sbjct: 96 KVLHACGEDLEVFHNAFGAIPVPMVDTQIMAAFL-----GHGLSTGFAALVEQYLNVELD 150 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 K++ +DW A LSD+QL+YAA+DV +L L EK+ G Sbjct: 151 KSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMEAG 193 >gi|254361720|ref|ZP_04977856.1| ribonuclease D [Mannheimia haemolytica PHL213] gi|261492043|ref|ZP_05988618.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495020|ref|ZP_05991488.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093246|gb|EDN74252.1| ribonuclease D [Mannheimia haemolytica PHL213] gi|261309336|gb|EEY10571.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312326|gb|EEY13454.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 372 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 3/176 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + L ++QL G V +I +P V +L D+ Sbjct: 23 ARKTKVVALDTEFIRTRTYYPILGLIQLFDGQ-QVSLIDPNTISDFSP-FVSLLADKNII 80 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V Y F P+ T++ + + G + L I + K Sbjct: 81 KVLHACSEDLEVFEYQFKQLPEPMLDTQVMAAFAGIGISM-GFAKLVSHYLNIELDKGAS 139 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A LS EQLQYAA+DV +L + + + L + C L+ +A+ Sbjct: 140 RTDWLARPLSAEQLQYAAADVWYLLPVYEKLAQALTKSTWQSAVAEECVALLKKAK 195 >gi|157370999|ref|YP_001478988.1| ribonuclease D [Serratia proteamaculans 568] gi|157322763|gb|ABV41860.1| ribonuclease D [Serratia proteamaculans 568] Length = 390 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 7/170 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IA+DTE + +L ++QL G+ +D + I Q + +L + + K H Sbjct: 42 IALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQWQP----FIELLSNTQVVKFLH 97 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 G D+ V F P+ T+I + T + G + E + + + K++ +DW Sbjct: 98 AGSEDLEVFLNAFKTLPTPMVDTQILAAFTGRPMS-CGFATLVAEYMEVELDKSEARTDW 156 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 A L+++Q YAA+DV +L + + ++ + G + A++ C L R Sbjct: 157 LARPLTEKQCVYAAADVFYLLPMAKRLVQETEEAGWTAAASNECLLLCQR 206 >gi|262394860|ref|YP_003286714.1| ribonuclease D [Vibrio sp. Ex25] gi|262338454|gb|ACY52249.1| ribonuclease D [Vibrio sp. Ex25] Length = 388 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 11/178 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + + +L ++QL G+ + +I P V +L D Sbjct: 35 AREADVVMLDTEFVRIRTFYPQLGLIQLFDGN-RLSLIDPTELTDMTP-FVALLKDTSVL 92 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132 K+ H D+ V FG P+ T++ + HGL ++E LG+ + Sbjct: 93 KVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFASLVEEYLGVELD 147 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K++ +DW A L+ +QL YAA+DV +L L + +K+ + G + + L+ + Sbjct: 148 KSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTQAGWWEAVQQESDLLVSK 205 >gi|319786955|ref|YP_004146430.1| ribonuclease D [Pseudoxanthomonas suwonensis 11-1] gi|317465467|gb|ADV27199.1| ribonuclease D [Pseudoxanthomonas suwonensis 11-1] Length = 364 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 8/171 (4%) Query: 10 DIPAECAARYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 D PAE R A I +DTE + RL +VQ++ G D++ + A P Sbjct: 8 DQPAELLRRLQSAPSRIGLDTEFIRERTFWPRLALVQMAVGG---DVLLVDALVPGMPEA 64 Query: 67 VGMLVDEKRE-KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 + +D K+ H D+ G RP++ T++A+ L + + + Sbjct: 65 IAAWLDAPHVLKVMHSASEDLVTFRCACGTVPRPMYDTQVAAALAGFGAGMG-YQRLVAQ 123 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + G ++K + SDW LS QL+YAA DV HL A+ +L+ LGR Sbjct: 124 VTGTTLAKGETRSDWMRRPLSPAQLEYAADDVRHLDAVYQATLARLRELGR 174 >gi|70728873|ref|YP_258622.1| ribonuclease D [Pseudomonas fluorescens Pf-5] gi|68343172|gb|AAY90778.1| ribonuclease D [Pseudomonas fluorescens Pf-5] Length = 377 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 10/117 (8%) Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHG 118 N L +L + K+ H D+ VL G P+F T++A+ Y N G Sbjct: 64 NWQPLAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAA----AYLNLGFSMG 119 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 ++E+LGI++ K + SDW LS+ Q+ YAA D VHL + FTE RL Sbjct: 120 YSRLVQEVLGIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAQV---FTELRPRLS 173 >gi|269967938|ref|ZP_06181978.1| ribonuclease D [Vibrio alginolyticus 40B] gi|269827461|gb|EEZ81755.1| ribonuclease D [Vibrio alginolyticus 40B] Length = 388 Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 11/178 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + + +L ++QL G+ + +I P V +L D Sbjct: 35 AREADVVMLDTEFVRIRTFYPQLGLIQLFDGN-RLSLIDPTELTDMTP-FVALLKDTSVL 92 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132 K+ H D+ V FG P+ T++ + HGL ++E LG+ + Sbjct: 93 KVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFASLVEEYLGVELD 147 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K++ +DW A L+ +QL YAA+DV +L L + +K+ + G + + L+ + Sbjct: 148 KSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAGWWEAVQQESDLLVSK 205 >gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2] gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2] Length = 377 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 9/177 (5%) Query: 3 TIRVHEGDIPAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLS-PGDG-TVDIIRIAAG 59 T+ ++ D+ A C + +A D E + ++++C+VQ++ P D VD + I Sbjct: 5 TLIENDEDLAARCDLLKTEKRLAFDLEADSMHHFKEKVCLVQMADPNDSFVVDPLSI--- 61 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + L + D K+FH FDI L F + V +F T+IA R + L Sbjct: 62 -DDLSVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNNLFDTEIACRFL--GIQKRSL 118 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L++ + + K Q +DWS LS E + Y+ +DV +L L ++L+ GR Sbjct: 119 AALLEKHFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLELSDILKKRLEDEGR 175 >gi|78048167|ref|YP_364342.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036597|emb|CAJ24288.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 363 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 3/189 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +H ++ A I +DTE + +L +VQ++ GD + I + G A Sbjct: 6 IHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGDEILLIDPLIPGMNAA-- 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L K+ H D+ G RP+F T+IA+ L K ++E Sbjct: 64 LKEWLTAPDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + G ++K + SDW LS QL+YAA DV +L A+ T +L GR + Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEWLAEDAE 182 Query: 186 FLMDRAELD 194 L+ E D Sbjct: 183 RLLATVEHD 191 >gi|218439906|ref|YP_002378235.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] gi|218172634|gb|ACK71367.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] Length = 308 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 20/166 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLV-----GMLVD 72 V + +DTE+ L ++ RL ++Q+ P D I N P++V ++V+ Sbjct: 20 VKILWLDTESTDLNSKKSRLSLIQVLAYPEDTNGSRTYIFDVLDN-PDIVDYFIEKIMVN 78 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHGLKDNLKELLG- 128 ++ KIFH + D+ L G + + V CT S+ + H LK L E L Sbjct: 79 DQINKIFHNAQHDLQFLG---GKKAKNVTCTLKLSKTIPYHILPVPNHTLK-TLTEYLTD 134 Query: 129 -INISKAQQSSDWSADDLSDEQLQYAASDVV---HLHALRLQFTEK 170 N+SK +Q+SDWS LS +QL YA D V H+H L+ ++ Sbjct: 135 FKNVSKEEQTSDWSQRPLSQKQLDYAKMDPVYLAHIHGRLLELNQQ 180 >gi|332667981|ref|YP_004450769.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100] gi|332336795|gb|AEE53896.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100] Length = 395 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 ++ + D+E +G RLC++Q++ G I KN + M+ + K+ Sbjct: 23 IEWMCFDSEFVGEKRFTTRLCLIQVATRHGLFLIDPFPL--KNLDPFLEMIENPNIVKVT 80 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H G D +L+ +FG + F T+IA+ Y K ++ L IN++K+ +D Sbjct: 81 HAGENDYRLLYASFGTIPKNTFDTQIAAGFL-GYRYPLAFKKLVETELKINMNKSFTVAD 139 Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163 W A + QL+YA D+ L+ L Sbjct: 140 WEARPFNQNQLKYAIQDIEPLYDL 163 >gi|294626013|ref|ZP_06704623.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599683|gb|EFF43810.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 363 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 H ++ A I +DTE + +L +VQ++ G+ + I + G A Sbjct: 6 THPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L+ K+ H D+ G RP+F T+IA+ L K ++E Sbjct: 64 LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + G ++K + SDW LS QL+YAA DV +L A+ + T +L GR + + Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLTEQGRLEWLAEDAD 182 Query: 186 FLMDRAELD 194 L+ E D Sbjct: 183 RLLATVEHD 191 >gi|154508933|ref|ZP_02044575.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC 17982] gi|153798567|gb|EDN80987.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC 17982] Length = 414 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 2/95 (2%) Query: 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 G+R +F T+IA+RL + GL ++++LG+ + K Q+SDWS L E L+YA Sbjct: 117 GLRPSTLFDTEIAARLI--GLERFGLAAVVEQVLGLGLVKDHQASDWSVRPLPKEWLRYA 174 Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 A DV L L + +++L +GR + A + + Sbjct: 175 ALDVELLTELYYRLSKRLDEMGRWEWAQQEFGYAL 209 >gi|88705065|ref|ZP_01102777.1| ribonuclease D [Congregibacter litoralis KT71] gi|88700760|gb|EAQ97867.1| ribonuclease D [Congregibacter litoralis KT71] Length = 370 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 7/143 (4%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREK 77 D IAVDTE + + ++QL D +D + I+ N L +L D K Sbjct: 22 ADEIAVDTEFMRRNSYYPHIALLQLCTDDHAWLIDPLTIS----NLDGLRALLTDSACIK 77 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + GV P+ T+ A+ L G + +KELLG+ + K + Sbjct: 78 VLHSCSEDLEVFRHWLGVLPSPLVDTQRATALLGKGFGL-GYRALVKELLGVELDKGETR 136 Query: 138 SDWSADDLSDEQLQYAASDVVHL 160 SDW LS+ Q YAA DV+ L Sbjct: 137 SDWLKRPLSESQCHYAALDVLEL 159 >gi|325928069|ref|ZP_08189282.1| ribonuclease D [Xanthomonas perforans 91-118] gi|325541567|gb|EGD13096.1| ribonuclease D [Xanthomonas perforans 91-118] Length = 363 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 3/189 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +H ++ A I +DTE + +L +VQ++ GD + I + G A Sbjct: 6 IHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGDEILLIDPLIPGMNAA-- 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L K+ H D+ G RP+F T+IA+ L K ++E Sbjct: 64 LKEWLTATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + G ++K + SDW LS QL+YAA DV +L A+ T +L GR + Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEWLAEDAE 182 Query: 186 FLMDRAELD 194 L+ E D Sbjct: 183 RLLATVEHD 191 >gi|188991267|ref|YP_001903277.1| hypothetical protein xccb100_1872 [Xanthomonas campestris pv. campestris str. B100] gi|167733027|emb|CAP51225.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 362 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 6/156 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE + +L +VQ++ G+ + I + G +A L LV K+ H Sbjct: 22 IGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMTDA--LKDWLVAPDIVKVMHSA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ GV RP+F T+IA+ L K ++E+ G ++K + SDW Sbjct: 80 SEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQEVTGTLLTKGETRSDWMR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175 LS QL+YAA DV +L A+ T KL RLG Sbjct: 139 RPLSPAQLEYAADDVRYLFAIHDALTAKLTAQDRLG 174 >gi|293192610|ref|ZP_06609564.1| putative ribonuclease D [Actinomyces odontolyticus F0309] gi|292820117|gb|EFF79114.1| putative ribonuclease D [Actinomyces odontolyticus F0309] Length = 414 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%) Query: 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 G+R +F T+IA+RL + GL ++++LG+ + K Q+SDWS L E L+YA Sbjct: 117 GLRPSALFDTEIAARLI--GLERFGLAAVVEQVLGLGLVKDHQASDWSVRPLPKEWLRYA 174 Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLA 180 A DV L L + +++L +GR + A Sbjct: 175 ALDVELLTELYYRLSKRLDEMGRWEWA 201 >gi|289665658|ref|ZP_06487239.1| ribonuclease D [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 210 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 6/173 (3%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 H ++ A I +DTE + +L +VQL+ G+ + I + G A Sbjct: 6 THPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQLAIGEEILLIDPLIPGMNEA-- 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L K+ H D+ GV RP+F T+IA+ L K ++E Sbjct: 64 LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLG 175 + G ++K + SDW LS QL+YAA DV +L A+ + T +L RLG Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQDRLG 175 >gi|21243147|ref|NP_642729.1| ribonuclease D [Xanthomonas axonopodis pv. citri str. 306] gi|21108668|gb|AAM37265.1| ribonuclease D [Xanthomonas axonopodis pv. citri str. 306] Length = 363 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 H ++ A I +DTE + +L +VQ++ G+ + I + G A Sbjct: 6 THPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L+ K+ H D+ G RP+F T+IA+ L K ++E Sbjct: 64 LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + G ++K + SDW LS QL+YAA DV +L A+ + T +L GR + + Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLAEQGRLEWLAEDAD 182 Query: 186 FLMDRAELD 194 L+ E D Sbjct: 183 RLLATVEHD 191 >gi|262375228|ref|ZP_06068461.1| ribonuclease D [Acinetobacter lwoffii SH145] gi|262309482|gb|EEY90612.1| ribonuclease D [Acinetobacter lwoffii SH145] Length = 380 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLK----DNLKELLGI 129 ++ IFH DI +++ YT + VF T++ HGL+ + LK++L + Sbjct: 72 QQNIFHACSEDIDLIYHYTQKKSLSNVFDTQVGMSFLG-----HGLQVSYQNALKQMLEV 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS EQL YAA+DV +L L + + L D A C FL Sbjct: 127 DIEKDQTRSDWLARPLSSEQLLYAANDVHYLVQLSEKIKQDLDSKDLLDFALQDCRFL 184 >gi|294666468|ref|ZP_06731711.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603774|gb|EFF47182.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 363 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 3/189 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 H ++ A I +DTE + +L +VQ++ G+ + I + G A Sbjct: 6 THPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L+ K+ H D+ G RP+F T+IA+ L K ++E Sbjct: 64 LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + G ++K + SDW LS QL+YAA DV +L A+ + T +L GR + Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLTEQGRLEWQAEDAE 182 Query: 186 FLMDRAELD 194 L+ E D Sbjct: 183 RLLATVEHD 191 >gi|260366009|ref|ZP_05778494.1| ribonuclease D [Vibrio parahaemolyticus K5030] gi|308111259|gb|EFO48799.1| ribonuclease D [Vibrio parahaemolyticus K5030] Length = 292 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66 D+ CA AR D + +DTE + + +L ++QL G +D + + + Sbjct: 27 DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122 + +L D K+ H D+ V FG P+ T++ + HGL Sbjct: 83 IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAG 190 >gi|226945355|ref|YP_002800428.1| ribonuclease D protein [Azotobacter vinelandii DJ] gi|226720282|gb|ACO79453.1| ribonuclease D protein [Azotobacter vinelandii DJ] Length = 375 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 10/168 (5%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + + CA R + +A+DTE + + + +VQ+ G I + G L Sbjct: 11 DASLASHCARWRQLPFVALDTEFVRVDTFYPQTGLVQVGDGRSAYLIDPLDIGDWRP--L 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNL 123 +L D K+ H D+ VL G P+F T++A+ Y N G + Sbjct: 69 AALLEDPAVVKVLHACSEDLEVLLRLTGSLPLPLFDTQLAA----AYLNLGFSMGYSRLV 124 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + +LGI + K + SDW LS+ Q++YAA D VHL L + +L Sbjct: 125 QAVLGIELPKGETRSDWLQRPLSELQIRYAAEDAVHLAELYVALGARL 172 >gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana] Length = 834 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 10/168 (5%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDI--IRIAAGQKNAPNLVGMLVDE 73 R V+ AVD E + C++Q+S D VD +RI G P L + D Sbjct: 240 RSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIG----PYLREIFKDP 295 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K++K+ H DI L FG+ V +F T ASR+ N L+ L+ G+ +K Sbjct: 296 KKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERN--SLEFLLQHFCGVTANK 353 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 Q++DW L +E +YA D +L + +LQR+ + D T Sbjct: 354 EYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHT 401 >gi|15239221|ref|NP_198440.1| 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein [Arabidopsis thaliana] Length = 838 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 10/168 (5%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDI--IRIAAGQKNAPNLVGMLVDE 73 R V+ AVD E + C++Q+S D VD +RI G P L + D Sbjct: 245 RSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIG----PYLREIFKDP 300 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K++K+ H DI L FG+ V +F T ASR+ N L+ L+ G+ +K Sbjct: 301 KKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERN--SLEFLLQHFCGVTANK 358 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 Q++DW L +E +YA D +L + +LQR+ + D T Sbjct: 359 EYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHT 406 >gi|262199835|ref|YP_003271044.1| ribonuclease D [Haliangium ochraceum DSM 14365] gi|262083182|gb|ACY19151.1| Ribonuclease D [Haliangium ochraceum DSM 14365] Length = 400 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV-DEKREKIFHYGRFDIAVLFYTFGVRV 97 L +VQ+S GD I + P V L+ D + H + D+ +L F + Sbjct: 46 LALVQVSWGDPEAPEIALIDSVAVDPTPVLRLIGDPAVVSVAHAAKQDLGILAARFDIFA 105 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 + T+IA+ Q G + LLG+ + KA Q + W LS QL+YAA DV Sbjct: 106 ENFWDTQIAAAFV-GMAEQIGYGKLVDALLGVQLDKASQFTKWLERPLSPAQLRYAADDV 164 Query: 158 VHLHALRLQFTEKLQRLGR 176 +L + +++L LGR Sbjct: 165 RYLPRVWAHLSQRLDELGR 183 >gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466] gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466] Length = 325 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66 D+ CA AR D + +DTE + + +L ++QL G +D + + + Sbjct: 27 DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122 + +L D K+ H D+ V FG P+ T++ + HGL Sbjct: 83 IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAG 190 >gi|152996550|ref|YP_001341385.1| ribonuclease D [Marinomonas sp. MWYL1] gi|150837474|gb|ABR71450.1| ribonuclease D [Marinomonas sp. MWYL1] Length = 384 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 3/138 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVDTE + ++Q+S GD V I ++ + L ++VD K+FH Sbjct: 37 IAVDTEFIRRTTYFPITGLIQISEGDKAVLIDPLSIDEWEP--LRNLMVDPSVMKVFHAC 94 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V GV P + T+I + +K + E L I ++K + SDW Sbjct: 95 SEDLDVFDRLLGVLPTPFYDTQIGEAYASAQWSLSYVK-LIHEYLQIEVAKDETRSDWVQ 153 Query: 143 DDLSDEQLQYAASDVVHL 160 L+D Q +YAA DVV+L Sbjct: 154 RPLTDAQKRYAALDVVYL 171 >gi|153840116|ref|ZP_01992783.1| ribonuclease D [Vibrio parahaemolyticus AQ3810] gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810] Length = 341 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66 D+ CA AR D + +DTE + + +L ++QL G +D + + + Sbjct: 27 DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122 + +L D K+ H D+ V FG P+ T++ + HGL Sbjct: 83 IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAG 190 >gi|21231744|ref|NP_637661.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768130|ref|YP_242892.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004] gi|21113449|gb|AAM41585.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573462|gb|AAY48872.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004] Length = 362 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 6/156 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE + +L +VQ++ G+ + I + G +A L L+ K+ H Sbjct: 22 IGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMTDA--LKDWLIAPDIVKVMHSA 79 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ GV RP+F T+IA+ L K ++E+ G ++K + SDW Sbjct: 80 SEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQEVTGTLLTKGETRSDWMR 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175 LS QL+YAA DV +L A+ T KL RLG Sbjct: 139 RPLSPAQLEYAADDVRYLFAIHDALTAKLTAQDRLG 174 >gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana] gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana] Length = 870 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 10/168 (5%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDI--IRIAAGQKNAPNLVGMLVDE 73 R V+ AVD E + C++Q+S D VD +RI G P L + D Sbjct: 277 RSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIG----PYLREIFKDP 332 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K++K+ H DI L FG+ V +F T ASR+ N L+ L+ G+ +K Sbjct: 333 KKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERN--SLEFLLQHFCGVTANK 390 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 Q++DW L +E +YA D +L + +LQR+ + D T Sbjct: 391 EYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHT 438 >gi|330808098|ref|YP_004352560.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376206|gb|AEA67556.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 377 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 7/113 (6%) Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHG 118 N L +L + K+ H D+ VL G P+F T++A+ Y N G Sbjct: 64 NWQPLAALLENPAVLKVLHACSEDLEVLLRLTGSLPAPLFDTQLAA----AYLNLGFSMG 119 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++E+LGI + K + SDW LS+ Q+ YAA D VHL + + KL Sbjct: 120 YSRLVQEVLGIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVLLRPKL 172 >gi|325914723|ref|ZP_08177061.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937] gi|325539000|gb|EGD10658.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937] Length = 364 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 3/171 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 H ++ A I +DTE + +L +VQ++ G+ + I + G A Sbjct: 6 THPSELTERLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNEA-- 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L K+ H D+ GV RP+F T+IA+ L K ++E Sbjct: 64 LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + G ++K + SDW LS QL+YAA DV +L A+ + + +L L R Sbjct: 123 VTGTLLTKGETRSDWMRRPLSASQLEYAADDVRYLFAIHDELSRRLTELDR 173 >gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034] gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034] Length = 372 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66 D+ CA AR D + +DTE + + +L ++QL G +D + + + Sbjct: 27 DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122 + +L D K+ H D+ V FG P+ T++ + HGL Sbjct: 83 IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197 Query: 183 CCNFLMDR 190 + L+ + Sbjct: 198 ESDLLVSK 205 >gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633] gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633] gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329] Length = 388 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66 D+ CA AR D + +DTE + + +L ++QL G +D + + + Sbjct: 27 DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122 + +L D K+ H D+ V FG P+ T++ + HGL Sbjct: 83 IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197 Query: 183 CCNFLMDR 190 + L+ + Sbjct: 198 ESDLLVSK 205 >gi|206576967|ref|YP_002237811.1| ribonuclease D [Klebsiella pneumoniae 342] gi|290508867|ref|ZP_06548238.1| ribonuclease D [Klebsiella sp. 1_1_55] gi|206566025|gb|ACI07801.1| ribonuclease D [Klebsiella pneumoniae 342] gi|289778261|gb|EFD86258.1| ribonuclease D [Klebsiella sp. 1_1_55] Length = 375 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 7/168 (4%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGT-VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + +L ++QL DGT V +I AP + +L+++ K H G Sbjct: 27 LDTEFVRTRTYYPQLGLLQLF--DGTQVSLIDPLTISDWAP-MRELLLNQDVTKYLHAGS 83 Query: 84 FDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V F + +P+ T+I A+ R + G ++E G+ + K++ +DW A Sbjct: 84 EDLEVFLNAFSLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKSESRTDWLA 141 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 L++ Q +YAA+DV +L + Q + R G A C + R Sbjct: 142 RPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLSAALDECRLMQQR 189 >gi|262194484|ref|YP_003265693.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365] gi|262077831|gb|ACY13800.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365] Length = 925 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 5/135 (3%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 LC+VQL+ + TV +I A P + +L KI H +F+ +V F G+ + Sbjct: 791 LCLVQLAAPEYTV-VIDARAVDDLGP-VSELLASRAVVKIIHNAQFERSV-FRKLGMDIE 847 Query: 99 PVFCT-KIASRL-TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 VF T K++ RL R HGL LG + K +Q SDW+ L+ QL YAA D Sbjct: 848 NVFDTLKVSRRLRGRKREGGHGLGAVCARELGRELDKHEQRSDWTLRPLTQRQLDYAALD 907 Query: 157 VVHLHALRLQFTEKL 171 L L +FT +L Sbjct: 908 AEVLLVLHERFTREL 922 >gi|288934742|ref|YP_003438801.1| ribonuclease D [Klebsiella variicola At-22] gi|288889451|gb|ADC57769.1| ribonuclease D [Klebsiella variicola At-22] Length = 371 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 7/168 (4%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGT-VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + +L ++QL DGT V +I AP + +L+++ K H G Sbjct: 23 LDTEFVRTRTYYPQLGLLQLF--DGTQVSLIDPLTISDWAP-MRELLLNQDVTKYLHAGS 79 Query: 84 FDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V F + +P+ T+I A+ R + G ++E G+ + K++ +DW A Sbjct: 80 EDLEVFLNAFSLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKSESRTDWLA 137 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 L++ Q +YAA+DV +L + Q + R G A C + R Sbjct: 138 RPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLSAALDECRLMQQR 185 >gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037] gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037] Length = 354 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66 D+ CA AR D + +DTE + + +L ++QL G +D + + + Sbjct: 27 DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122 + +L D K+ H D+ V FG P+ T++ + HGL Sbjct: 83 IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAG 190 >gi|156933634|ref|YP_001437550.1| ribonuclease D [Cronobacter sakazakii ATCC BAA-894] gi|156531888|gb|ABU76714.1| hypothetical protein ESA_01456 [Cronobacter sakazakii ATCC BAA-894] Length = 369 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR A+A+DTE + +L ++QL G+ V +I AP +L D+ Sbjct: 15 ARTQRALALDTEFVRTRTYYPQLGLIQLYDGEN-VALIDPLTITDWAP-FQALLQDQNVT 72 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F + P T++ + + G ++ G+ + K++ Sbjct: 73 KFLHAGSEDLEVFQNAFSMMPDPFIDTQVLASFV-GHPLSCGFATLVEHHTGVVLDKSES 131 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L++ Q YAA+DV +L + + E+++ G A + C + R Sbjct: 132 RTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAINECRLMTQR 185 >gi|149196457|ref|ZP_01873512.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155] gi|149140718|gb|EDM29116.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155] Length = 372 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ + + +F T++A T Q L E++ I ISK QQ Sbjct: 76 KILHSPDQDLKLFKLFCDAEAKNIFDTQLAYAFTGA-PKQVSLAKLCLEMMDIEISKTQQ 134 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 SDW+ L D QL YAA DV +L + EKL+ GR D Sbjct: 135 VSDWTKRPLKDSQLNYAAEDVRYLIEITETLREKLKENGRYD 176 >gi|71065355|ref|YP_264082.1| putative ribonuclease D [Psychrobacter arcticus 273-4] gi|71038340|gb|AAZ18648.1| putative ribonuclease D [Psychrobacter arcticus 273-4] Length = 432 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 8/155 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + RL +VQL+ G+ + + A Q L L+ + I+H Sbjct: 72 VALDTEFIKRDTYYPRLALVQLNTGNH---VYLLDAPQLQLSELWQALI-KVDVAIWHAC 127 Query: 83 RFDIAVLFYTFGVR-VRPVFCTKIA-SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ + + G + +F T+IA S LT Q G + L E L ++I K Q SDW Sbjct: 128 GEDLGIFYLLSGCPPLTNIFDTQIALSYLTGQL--QMGYQQALDEQLDMHIDKEQSQSDW 185 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 LSDEQ QYA DV L AL L L+ G Sbjct: 186 LQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQG 220 >gi|262372600|ref|ZP_06065879.1| ribonuclease D [Acinetobacter junii SH205] gi|262312625|gb|EEY93710.1| ribonuclease D [Acinetobacter junii SH205] Length = 380 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 12/104 (11%) Query: 71 VDEKREKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLK----DNLKE 125 V E ++ IFH DI +++ Y ++ VF T++A HGL+ + LK Sbjct: 68 VFEAQQNIFHACGEDIDLIYHYADQKPLKNVFDTQVAMAFLG-----HGLQVSYQNALKT 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL--RLQF 167 L I+I K Q SDW A LS EQ+ YAA+DV++L+ L RL+F Sbjct: 123 CLNIDIDKDQTRSDWLARPLSQEQMSYAANDVLYLNKLAERLKF 166 >gi|325107025|ref|YP_004268093.1| ribonuclease D [Planctomyces brasiliensis DSM 5305] gi|324967293|gb|ADY58071.1| Ribonuclease D [Planctomyces brasiliensis DSM 5305] Length = 401 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 5/168 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A DTE + R RLC++Q + V + + ++ DE+ E I H G Sbjct: 25 VAFDTEFVSEFTFRPRLCLLQFGTSEEKVAVDPFQLT--DLTPWWEIMADEQTEVIIHGG 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRL-TRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 R +I ++ G + + + +I L +R + H +++++ + + +DWS Sbjct: 83 REEILFCWHAIGKKPQNLIDVQIVQGLLSRGFPLSHSAL--VQKVVRKKVHGKETRTDWS 140 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 L+ +Q+ YA DVVHL + + +L++ R+ A C +D Sbjct: 141 KRPLTTKQINYAIEDVVHLIDIAEKQKVRLKKTKRTTWADEECRQFVD 188 >gi|254508462|ref|ZP_05120581.1| ribonuclease D [Vibrio parahaemolyticus 16] gi|219548574|gb|EED25580.1| ribonuclease D [Vibrio parahaemolyticus 16] Length = 386 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 11/175 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR VD + +DTE + +L ++QL G+ + +I + P V +L D Sbjct: 34 AREVDVVMLDTEFVRTRTFYPQLGLIQLFDGE-QLSLIDPTELDEMTP-FVELLQDTSVL 91 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINIS 132 K+ H D+ V +FG P+ T++ + HGL L L + + Sbjct: 92 KVLHACGEDLEVFQNSFGCLPYPMVDTQVMAAFL-----GHGLSTGFASLVEHYLQVELD 146 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 K++ +DW A L+D+QL YAA+DV +L L + + G + A + L Sbjct: 147 KSESRTDWLARPLTDKQLDYAAADVFYLLPLYEKLLNAVTEAGWWEAAQQESDLL 201 >gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1] gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1] Length = 584 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 6/131 (4%) Query: 52 DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL-T 110 D+ RI ++ L+ E + I H +FDI L FG+ + VF T IAS+L + Sbjct: 61 DMFRIPQFSEHLKELL-----ENKGVIGHNLKFDIKFLKTNFGIFPQIVFDTMIASQLLS 115 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +H L L ++ K+QQ S W +L++EQL+YAA DV L + ++ Sbjct: 116 EDSREKHSLSALSYRLTDNHLDKSQQRSPWGIKNLTEEQLRYAAKDVQVLREIFPVLRDE 175 Query: 171 LQRLGRSDLAT 181 L R+ AT Sbjct: 176 LNRIETPHKAT 186 >gi|15827504|ref|NP_301767.1| hypothetical protein ML1040 [Mycobacterium leprae TN] gi|221229981|ref|YP_002503397.1| hypothetical protein MLBr_01040 [Mycobacterium leprae Br4923] gi|699161|gb|AAA62926.1| u1764u [Mycobacterium leprae] gi|13093054|emb|CAC31421.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933088|emb|CAR71135.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 429 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 9/168 (5%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDE---KREKIF 79 AVDTE +R ++Q+ + GTV I ++ G N P V E K E I Sbjct: 51 AVDTERASGFRYSNRAYLIQIRRANAGTVLIDPVSHG--NDPLTALRPVAEVISKDEWIL 108 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+R ++ T++A RL ++ L ++ LLG ++K ++D Sbjct: 109 HSADQDLPCLA-EVGMRPPALYDTELAGRLA--GFDRVNLATMVQRLLGFELAKGHGAAD 165 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 WS L + L YAA DV L LR ++ L ++D AT N+L Sbjct: 166 WSKRPLPSDWLNYAALDVELLIELRTAISKVLAEQDKTDWATQEFNYL 213 >gi|59712314|ref|YP_205090.1| ribonuclease D [Vibrio fischeri ES114] gi|59480415|gb|AAW86202.1| ribonuclease D [Vibrio fischeri ES114] Length = 373 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 11/152 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + +DTE + RL ++Q+ G+ VD + I + L +L +E K+ H Sbjct: 25 LMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEI----DDLTPLWDLLKNESVTKVLH 80 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ V + G P+ T+I + Y G + + LGI + K + +DW Sbjct: 81 ACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKLVSDYLGIELDKGEARTDW 139 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 A LSD+QL YAA+DV +L L EKLQ Sbjct: 140 MARPLSDKQLHYAAADVHYL----LPLFEKLQ 167 >gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] Length = 575 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 11/150 (7%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTET G DRL +VQL G G + ++ + G++ L +L ++ + H + Sbjct: 27 LDTETTG-----DRLRLVQLG-GQGEIFLLDLFELGERGVLFLKELL--SQKGVVGHNLK 78 Query: 84 FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 FD+ L Y + + VF T +AS+L ++H L+ LG + K+ Q SDW + Sbjct: 79 FDLKYL-YRYHIEPYAVFDTMVASQLL-AELDRHSLQSVAMHYLGQVLDKSLQLSDWGSR 136 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L+ QL+YAA DVV + L EKL + Sbjct: 137 VLTKAQLEYAALDVVVVRDLFPILLEKLNQ 166 >gi|326384419|ref|ZP_08206099.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395] gi|326196764|gb|EGD53958.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395] Length = 407 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 78/181 (43%), Gaps = 11/181 (6%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71 AE R IAVDTE R +VQL G G+ I I + P+ + L+ Sbjct: 40 AELIGRGTGPIAVDTERASGYRYSQRAYLVQLKRAGSGSFLIDPI-----SHPDALSPLI 94 Query: 72 D--EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 D + E I H D+ L G +F T++A RL + L + E L + Sbjct: 95 DALDGPEWILHAADQDLPCL-RELGFTPTTLFDTELAGRLLNI--PKVNLAAMVAEFLHL 151 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++K ++DWS L D+ L YAA DV L LR + L GR + A +++ Sbjct: 152 GLAKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAVADALSEAGRDEWAAQEFAYVLA 211 Query: 190 R 190 R Sbjct: 212 R 212 >gi|156089519|ref|XP_001612166.1| 3'-5' exonuclease domain containing protein [Babesia bovis] gi|154799420|gb|EDO08598.1| 3'-5' exonuclease domain containing protein [Babesia bovis] Length = 230 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 5/122 (4%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFG 94 R R ++Q++ D + + G + P+ V +L D KI H D+ +++ FG Sbjct: 80 RTRPAVIQIASNDICLVYLMYKIG--HLPSSVSHILSDPDILKISHGAPSDMRLMYRHFG 137 Query: 95 VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 VR R + S LK ++ +LG+ +SK QQ S+W A +LS +Q++YAA Sbjct: 138 VRSRSF--VDLQSVCEELQLRPCSLKSVVQRVLGLRLSKKQQCSNWEAAELSQQQIKYAA 195 Query: 155 SD 156 +D Sbjct: 196 TD 197 >gi|197335934|ref|YP_002156528.1| ribonuclease D [Vibrio fischeri MJ11] gi|197317424|gb|ACH66871.1| ribonuclease D [Vibrio fischeri MJ11] Length = 373 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 11/152 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + +DTE + RL ++Q+ G+ VD + I + L +L +E K+ H Sbjct: 25 LMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEI----DDLTPLWDLLKNESVTKVLH 80 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ V + G P+ T+I + Y G + + LGI + K + +DW Sbjct: 81 ACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKLVSDYLGIELDKGEARTDW 139 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 A LSD+QL YAA+DV +L L EKLQ Sbjct: 140 MARPLSDKQLHYAAADVHYL----LPLFEKLQ 167 >gi|84624243|ref|YP_451615.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576150|ref|YP_001913079.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368183|dbj|BAE69341.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520602|gb|ACD58547.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A] Length = 363 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 6/173 (3%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +H ++ A I +DTE + +L +VQ++ G+ + I + G A Sbjct: 6 IHPSELTDRLQAARPARIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L K+ H D+ GV RP+F T+IA+ L K ++E Sbjct: 64 LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175 + G ++K + SDW LS QL+YAA DV +L A+ + T +L RLG Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLG 175 >gi|93005631|ref|YP_580068.1| 3'-5' exonuclease [Psychrobacter cryohalolentis K5] gi|92393309|gb|ABE74584.1| 3'-5' exonuclease [Psychrobacter cryohalolentis K5] Length = 380 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + RL ++QL+ G+ + + A Q L L+ + I+H Sbjct: 20 VALDTEFIKRDTYYPRLALIQLNTGN---HVYLLDAPQLQLSELWQALM-KVDVAIWHAC 75 Query: 83 RFDIAVLFYTFGVR-VRPVFCTKIA-SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ + + G + +F T+IA S LT Q G + L E L ++I K Q SDW Sbjct: 76 GEDLGIFYLLSGCPPLTNIFDTQIALSYLTGQL--QMGYQQALDEQLDMHIDKEQSQSDW 133 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 LSDEQ QYA DV L AL L L+ G + C Sbjct: 134 LQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQGLYEYVWEDCQL 179 >gi|209694623|ref|YP_002262551.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238] gi|208008574|emb|CAQ78749.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238] Length = 374 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 11/152 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + +DTE + RL ++Q+ G+ VD + I + L +L +E K+ H Sbjct: 25 LMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEI----DDLTPLWDLLKNESVTKVLH 80 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ V + G P+ T+I + Y G + + LG+++ K + +DW Sbjct: 81 ACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKLVSDYLGVDLDKGESRTDW 139 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 A LSD+QL YAA+DV +L L EKLQ Sbjct: 140 MARPLSDKQLDYAAADVHYL----LPLFEKLQ 167 >gi|294141241|ref|YP_003557219.1| ribonuclease D [Shewanella violacea DSS12] gi|293327710|dbj|BAJ02441.1| ribonuclease D [Shewanella violacea DSS12] Length = 369 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 3/159 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R D + +DTE + L ++Q G I +A N +L + Sbjct: 21 RQSDLLVLDTEFVRTRTYYANLGLIQAYDGKTLALIDPVAIN--NLSEFWSLLTEPGITT 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + +F ++IA+ L + + G +++ L I++ K + Sbjct: 79 VLHSCSEDLEVFARNGACQPYNLFDSQIAAALC-GFGHGLGYAKLVEQTLDISLDKGESR 137 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +DW LS+ QL YAA+DV +L+ L Q EKLQ GR Sbjct: 138 TDWMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQEQGR 176 >gi|330445493|ref|ZP_08309145.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489684|dbj|GAA03642.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 375 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 7/177 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73 +A+ A+ +DTE + RL ++QL G+ +D + I + L +L D+ Sbjct: 18 SAKTQAAVMLDTEFVRTRTLYPRLGLIQLFDGEHLSLIDPLEI----DDMEPLWALLRDQ 73 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+ H D+ V + G P+ T++ + + G +KE +G+ + K Sbjct: 74 SVIKVLHACGEDLEVFQHHAGCLPTPMLDTQLMAAFL-GHGISTGFGALVKEYVGVELDK 132 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + ++W A L+ +QL YAA+DV +L L K++ G + CN +M R Sbjct: 133 GEARTNWLARPLTAKQLDYAAADVHYLKPLYETLLAKVEATGYMEALQQECNSVMLR 189 >gi|295394778|ref|ZP_06804993.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030] gi|294972374|gb|EFG48234.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030] Length = 385 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R +F T++A+RL + GL +E++G+ ++K Sbjct: 83 EWILHAATQDLGCLAEK-GMRPDALFDTELAARLLNF--ERFGLASLTEEIMGVTLAKEH 139 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 + DWS L E L YAA DV L+ LR + ++L G+ + A + L+ Sbjct: 140 SAVDWSTRPLPHEWLAYAALDVEVLNHLRTELADRLHAQGKWEYARQEFDHLL 192 >gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis] gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis] Length = 857 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 10/147 (6%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLVGMLVDE 73 R V+ AVD E + C++Q+S D +D + RI G P L + D Sbjct: 246 RAVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIIDTLKLRIHVG----PYLREVFKDP 301 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + K+ H DI L FG+ V +F T ASR+ + N L+ L+ GI +K Sbjct: 302 TKRKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERN--SLEHLLRHFCGITANK 359 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160 Q++DW L+DE L+Y D +L Sbjct: 360 EYQNADWRLRPLTDEMLRYGREDTHYL 386 >gi|27363618|ref|NP_759146.1| ribonuclease D [Vibrio vulnificus CMCP6] gi|27359734|gb|AAO08673.1| ribonuclease D [Vibrio vulnificus CMCP6] Length = 390 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 11/163 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + +L ++QL GD T+ +I + +L D Sbjct: 38 AREADVVMLDTEFVRTRTYYPQLGLIQLFDGD-TLSLIDPTV-LTDMSAFTELLNDASVM 95 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINIS 132 K+ H D+ V G P+ T+I + HGL L L + + Sbjct: 96 KVLHACGEDLEVFHNALGAIPVPMVDTQIMAAFL-----GHGLSTGFAALVEQYLNVELD 150 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 K++ +DW A LSD+QL+YAA+DV +L L EK+ G Sbjct: 151 KSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMEAG 193 >gi|302525782|ref|ZP_07278124.1| ribonuclease D [Streptomyces sp. AA4] gi|302434677|gb|EFL06493.1| ribonuclease D [Streptomyces sp. AA4] Length = 420 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 83/183 (45%), Gaps = 10/183 (5%) Query: 2 TTIRVHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIA 57 T V + D AE AR A+AVDTE + +VQL G GTV I IA Sbjct: 32 TPPVVADPDALAEACARLAAGTGAVAVDTERASGYRYWPKAYLVQLRREGSGTVLIDPIA 91 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 AP L +L D E + H D+ L +R R +F T++A RL + Sbjct: 92 LADDLAP-LRDVLNDT--EWVLHAASQDLPCLA-ELNLRPRSLFDTELAGRLA--GYERV 145 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L ++ LLG + K ++DWS L + L YAA DV L+ LR + +L G+ Sbjct: 146 ALGTLVELLLGYTLEKGHSAADWSKRPLPVDWLNYAALDVELLNELREKLEAELTAQGKL 205 Query: 178 DLA 180 + A Sbjct: 206 EWA 208 >gi|90416003|ref|ZP_01223936.1| ribonuclease D [marine gamma proteobacterium HTCC2207] gi|90332377|gb|EAS47574.1| ribonuclease D [marine gamma proteobacterium HTCC2207] Length = 374 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 7/164 (4%) Query: 1 MTTIR--VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 MTTI + AE + DA +A+DTE + +L ++QLS G+ +I Sbjct: 1 MTTINHWIDNSQQLAELCEQLQDATELAIDTEFMRSDTFFAKLALIQLSDGEQCW-LIDT 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A ++ P L +L + +FH D+ VL VR + +F +++A+ + + Sbjct: 60 PAIEQLQP-LTALLNGPQLTLVFHSCGEDLEVLDQVLSVRPKKLFDSQVAAGIVNIGYSM 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 G ++ +L I + K SDW A LSD Q +YAA DV++L Sbjct: 119 -GYARLVENMLQIELGKEDTRSDWLARPLSDRQKRYAADDVLYL 161 >gi|58582365|ref|YP_201381.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426959|gb|AAW75996.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331] Length = 416 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 6/156 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE + +L +VQ++ G+ + I + G A L L K+ H Sbjct: 76 IGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA--LKEWLTATDIVKVMHSA 133 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ GV RP+F T+IA+ L K ++E+ G ++K + SDW Sbjct: 134 SEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQEVTGTLLTKGETRSDWMR 192 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175 LS QL+YAA DV +L A+ + T +L RLG Sbjct: 193 RPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLG 228 >gi|212635098|ref|YP_002311623.1| ribonuclease D [Shewanella piezotolerans WP3] gi|212556582|gb|ACJ29036.1| Ribonuclease D [Shewanella piezotolerans WP3] Length = 369 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 5/168 (2%) Query: 13 AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A A+Y +A + +DTE + RL ++Q G I +A N +L Sbjct: 14 AALVAQYREAKLLVIDTEFVRTRTYYARLGLIQAYDGKTLALIDPLAV--TNLSLFWALL 71 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D K+ H D+ V + +F ++IA+ L G +++ L I Sbjct: 72 TDSSIIKLLHSCSEDLEVFAKNGACQPNKLFDSQIAAGLCGMGYG-LGYAKLVEQTLDIT 130 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + K + +DW LS+ QL YAA+DV +L+ L Q +KL+ GR D Sbjct: 131 LDKGESRTDWLKRPLSEAQLNYAANDVYYLYELYPQLVDKLESQGRLD 178 >gi|296171911|ref|ZP_06852975.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893910|gb|EFG73681.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 430 Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 7/188 (3%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTV--DIIRIAAG 59 ++ V E + AE R AVD E +R ++Q+ G GTV D + A Sbjct: 35 SVTVGEIEAAAELLGRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGAD 94 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 A V ++DE E I H D+ L G++ ++ T++A RL + L Sbjct: 95 PLEALRPVAEVLDED-EWILHSADQDLPCL-AEVGLQPPALYDTELAGRLA--GFERVNL 150 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ LLG ++K ++DWS L +E L YAA DV L LR + L + G++ Sbjct: 151 ATMVERLLGSGLAKGHGAADWSKRPLPEEWLNYAALDVELLIELRGAIADVLAQQGKTGW 210 Query: 180 ATSCCNFL 187 A ++L Sbjct: 211 AAEEFDYL 218 >gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299] gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299] Length = 332 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +AVD E + C++Q+S D VD + + ++A L ++ D + K+FH Sbjct: 57 MAVDLEHHSYRSFQGFTCVIQVSTRRMDFVVDALELRGLIRDA--LGPVMADPRVMKVFH 114 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L FG+ V +F T A+R+ + GL L + K Q +DW Sbjct: 115 GADMDVQWLQRDFGIYVVGMFDTGQAARVLELPSK--GLAYLLDHYCSVKADKRFQLADW 172 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 LS+E + YA D HL + + ++L +GR D Sbjct: 173 RVRPLSEEMISYARGDTHHLLYVYDRLRQQLDAVGRGD 210 >gi|54308269|ref|YP_129289.1| ribonuclease D [Photobacterium profundum SS9] gi|46912697|emb|CAG19487.1| hypothetical ribonuclease D [Photobacterium profundum SS9] Length = 374 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR + +DTE + +L ++Q+ GD V I I + +L D+ Sbjct: 19 ARTHSVVMLDTEFVRTRTLYPKLGLIQMFDGDNLVLIDPIEID--DLTPFWDLLRDQSII 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + G P+ T++ + + G + E +G+++ K + Sbjct: 77 KVLHACGEDLEVFQHHAGCLPTPMIDTQLMAAFL-GHGVSAGFGSLVSEYVGVDLEKGEA 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W A L+D+QL YAA+DV +L L EK++ G + C LM + Sbjct: 136 RTNWLARPLTDKQLDYAAADVFYLLPLYETLLEKVKAKGWMEALELECAALMQK 189 >gi|317491812|ref|ZP_07950247.1| ribonuclease D [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920246|gb|EFV41570.1| ribonuclease D [Enterobacteriaceae bacterium 9_2_54FAA] Length = 371 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 8/179 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLV 71 E A+R+ IA+DTE + +L ++QL G+ +D + I Q V +L Sbjct: 17 EQASRHA-YIALDTEFVRTRTYYPQLGLIQLFDGETLTLIDPLPITDWQP----FVALLK 71 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + + K+ H D+ V + F P+ T+I + T + G + + L + + Sbjct: 72 NPEVTKLLHACSEDLEVFLHEFQTLPTPMIDTQILAAFTGRALS-CGFAAMVNDYLQVEL 130 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K++ +DW A L++ Q +YAA+DV +L L + ++ G D A C L R Sbjct: 131 DKSESRTDWLARPLTERQCEYAAADVFYLLPLADKLIAEVAEAGWLDAAKDDCLSLCRR 189 >gi|85712692|ref|ZP_01043738.1| Ribonuclease D [Idiomarina baltica OS145] gi|85693542|gb|EAQ31494.1| Ribonuclease D [Idiomarina baltica OS145] Length = 367 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 17/171 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPG------DGTVDIIRIAAGQKNAPNLVGML 70 AR + A+DTE + L +VQL+ D +DI A Q ++ Sbjct: 9 ARLAGSFAIDTEFVRRKTYFANLGLVQLNVDGETFIIDPLIDIDLTALWQ--------LI 60 Query: 71 VDEKREKIFHYGRFDIAVLFY-TFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL-G 128 D + H G DI + ++ + G + R VF T+IA+ ++ G +++L G Sbjct: 61 ADPDVVTVLHAGGEDIELFYHQSNGQKPRAVFDTQIAAGFIGMGSS-LGYASLVEQLFDG 119 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + + K+Q +DW LS+EQL YAA+DV +L+++ E++ + +D+ Sbjct: 120 VTLDKSQSRTDWLKRPLSEEQLTYAAADVSYLNSMYPWLVEQVAQAHVADI 170 >gi|327484520|gb|AEA78927.1| Ribonuclease D [Vibrio cholerae LMA3894-4] Length = 348 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 V +L D K+ H D+ V FG P+ T+I + Y G +++ Sbjct: 41 FVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQD 99 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 100 QLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 154 >gi|50085406|ref|YP_046916.1| ribonuclease D, processes tRNA [Acinetobacter sp. ADP1] gi|49531382|emb|CAG69094.1| ribonuclease D, processes tRNA [Acinetobacter sp. ADP1] Length = 398 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ +FH DI +++ Y + VF T++ HGL+ + LK +L I Sbjct: 90 KQNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLG-----HGLQVSYQAALKLVLDI 144 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 I K Q SDW A LSDEQL+YAA+DV++L L Q +LQ D C L Sbjct: 145 EIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVLEDCRHL 202 >gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719] gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719] Length = 374 Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + +VQ+ GDG + + ++ +L DE+ K+ H Sbjct: 28 LALDTEFMRVDTSYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 85 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V G P+F T++A+ + G +KE+L I++ K + SDW Sbjct: 86 SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 144 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L++ Q++YAA DV HL + L +L R+ L Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWL 181 >gi|330879592|gb|EGH13741.1| ribonuclease D [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 377 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 9/144 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + ++Q+ GDG + N L +L + K+ H Sbjct: 27 VALDTEFMRVDTFYPIAALLQI--GDGQSAWLIEPLLINNWAPLSALLENPDVIKVVHAC 84 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139 D+ VL G P+F T++A+ Y N G ++E+L I++ K + SD Sbjct: 85 SEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPKGETRSD 140 Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163 W LSD Q+ YAA D VHL L Sbjct: 141 WLQRPLSDTQISYAAEDAVHLAEL 164 >gi|92113585|ref|YP_573513.1| ribonuclease D [Chromohalobacter salexigens DSM 3043] gi|91796675|gb|ABE58814.1| ribonuclease D [Chromohalobacter salexigens DSM 3043] Length = 375 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 2/150 (1%) Query: 40 CIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 +VQL G V ++ A + P L +L K+ H D+ VL V V P Sbjct: 46 ALVQLYAGGDAVYMVDPRAVSAS-PALQALLSVSGPLKLLHASGEDLEVLESWAEVGVAP 104 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 + T++A L T + G + ++ G + K + SDW LSD QLQYAA DVV+ Sbjct: 105 IADTQVAQSLLGTQASL-GYQRLVEHWTGDVLPKEETRSDWLQRPLSDAQLQYAALDVVY 163 Query: 160 LHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 L + + L R GR C L D Sbjct: 164 LPRIWEAQRDALMREGRLAWLEEECARLCD 193 >gi|17229189|ref|NP_485737.1| hypothetical protein all1697 [Nostoc sp. PCC 7120] gi|17135517|dbj|BAB78063.1| all1697 [Nostoc sp. PCC 7120] Length = 302 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 15/156 (9%) Query: 25 VDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVG-----MLVDEKREK 77 +DTE R RL ++Q+ P D + D + + + P+LV ++V+ EK Sbjct: 25 IDTEVADYKSRNPRLSLIQVLDDPNDMSGDRVYLL-DVLDQPDLVADFVDKIMVNTNIEK 83 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTY--TNQHGLKDNLKELLGIN-ISK 133 +FH FD+ +L + R + CT +IA ++ + L+ K L N I K Sbjct: 84 VFHNANFDVKLLG---NKQARNITCTLEIAKKIPYYLLPVQNYQLQSLAKLLCNFNNIDK 140 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 +Q S+W LS+EQ++YA D ++L + + E Sbjct: 141 QEQGSNWGQRPLSEEQIEYAYLDCIYLAQIHRRLLE 176 >gi|262167934|ref|ZP_06035634.1| ribonuclease D [Vibrio cholerae RC27] gi|262023661|gb|EEY42362.1| ribonuclease D [Vibrio cholerae RC27] Length = 348 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 V +L D K+ H D+ V FG P+ T+I + Y G +++ Sbjct: 41 FVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQD 99 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 100 QLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAA 154 >gi|330964859|gb|EGH65119.1| ribonuclease D [Pseudomonas syringae pv. actinidiae str. M302091] Length = 377 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 9/144 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + ++Q+ GDG + N L +L + K+ H Sbjct: 27 VALDTEFMRVDTFYPIAALLQI--GDGQSAWLIDPLLINNWAPLSALLENPDVIKVVHAC 84 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139 D+ VL G P+F T++A+ Y N G ++E+L I++ K + SD Sbjct: 85 SEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPKGETRSD 140 Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163 W LSD Q+ YAA D VHL L Sbjct: 141 WLQRPLSDTQISYAAEDAVHLAEL 164 >gi|227496242|ref|ZP_03926539.1| possible ribonuclease D [Actinomyces urogenitalis DSM 15434] gi|226834230|gb|EEH66613.1| possible ribonuclease D [Actinomyces urogenitalis DSM 15434] Length = 431 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 19/195 (9%) Query: 4 IRVHEGDIP-----------AECAARYVDAIAVDTE-TLGLMPRRDRLCIVQLSPGDGTV 51 + HEG P A+C A +AVD E G +D I G GT Sbjct: 31 VHPHEGLPPVTDSPELLSQAADCLAAGHGPVAVDAERASGFRYGQDAYLIQLRREGAGTF 90 Query: 52 DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111 + + AG +A L L + E I H D+ L G+ R +F T++A+RL Sbjct: 91 LVDPVTAGDMSA--LAAAL--DGPEWILHAADQDLPCL-SALGLHPRSLFDTELAARLL- 144 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + GL ++E LG+ ++K ++DWS L L YAA DV L LR+ +L Sbjct: 145 -GRARVGLGAVVEETLGLRLAKDHAAADWSTRPLPRTWLVYAALDVELLADLRVALGAEL 203 Query: 172 QRLGRSDLATSCCNF 186 + G+++ A ++ Sbjct: 204 EEAGKAEWARQEFDY 218 >gi|54025710|ref|YP_119952.1| putative RNase D [Nocardia farcinica IFM 10152] gi|54017218|dbj|BAD58588.1| putative RNase D [Nocardia farcinica IFM 10152] Length = 424 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R +F T++ RL + GL ++ LLG + K Sbjct: 102 EWVLHSADQDLPGL-AELGLRPARLFDTELGGRLA--GFERVGLAAMVERLLGRTLRKGH 158 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++DWS L E L YAA DV L LR +LQR G+SD A Sbjct: 159 GAADWSTRPLPAEWLNYAALDVELLLELRDAVAAELQRQGKSDWAA 204 >gi|119511988|ref|ZP_01631084.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414] gi|119463339|gb|EAW44280.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414] Length = 871 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 31/164 (18%) Query: 25 VDTETLGLMPRRDRLCIVQL--SPGDGT------VDIIRIAAGQKNAPNLV-----GMLV 71 +DTE RL ++Q+ P D T +D++ + P+L +++ Sbjct: 25 LDTEIADFTTHYPRLSLIQVLADPTDSTGVSAYLLDVL-------DKPDLAEYFINQIMI 77 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLG-- 128 + EK+FH FD+ L + CT +IA ++TR LK LK L Sbjct: 78 NPNIEKVFHNAGFDLKYLGKKLAQNIT---CTYQIARKITRDRLKVSNLK--LKTLAAEL 132 Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 +N+ + SSDW LSD+Q++YAA D V+L A+ + E Sbjct: 133 CHFVNVDADEGSSDWGKRPLSDKQVKYAAMDTVYLAAVHRKLLE 176 >gi|330466515|ref|YP_004404258.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032] gi|328809486|gb|AEB43658.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032] Length = 438 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 13 AECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 AE AR+ +A+D E R +VQL G GT I + +A L Sbjct: 63 AEVVARFAAGSGPVALDAERASGYRYSQRAYLVQLRRSGAGTALIDPLPLPDLSA--LDA 120 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++ D E + H D+ L G+R R +F T++A+RL + GL ++LLG Sbjct: 121 VIADT--EWVLHAANQDLPCL-AELGLRPRRLFDTELAARLA--GFERVGLAALTEQLLG 175 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ K ++DWS+ L + L YAA DV L LR +L R G+S A Sbjct: 176 YSLEKHHSAADWSSRPLPESWLTYAALDVELLTDLRDALDAELTRQGKSQWA 227 >gi|254428623|ref|ZP_05042330.1| ribonuclease D [Alcanivorax sp. DG881] gi|196194792|gb|EDX89751.1| ribonuclease D [Alcanivorax sp. DG881] Length = 375 Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 10/169 (5%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +DTE + +L +VQ+ G+ +D R+ + P L + ++ + H Sbjct: 45 LDTEFMRERTFWPQLALVQVHDGEQIRLIDTTRV-----DGPTLSPVF--QQHTLVMHAC 97 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ + G + T+IA+ L+ Q G + ++ LLG+++ K ++W Sbjct: 98 SEDLEAIATFTGQYPAAIEDTQIAAALS-GEDMQWGYQKVVQMLLGVDLPKGATRTNWLK 156 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 LSDEQL YA DV +L + E+L +LGR C L+++A Sbjct: 157 RPLSDEQLHYAEDDVKYLPEVAAILAERLDKLGRRAWWQEECERLLNQA 205 >gi|320103484|ref|YP_004179075.1| ribonuclease D [Isosphaera pallida ATCC 43644] gi|319750766|gb|ADV62526.1| ribonuclease D [Isosphaera pallida ATCC 43644] Length = 396 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 3/151 (1%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 LC++Q++ V +I A +P +L D K E + H G D+ + G Sbjct: 45 LCLIQVATASKLV-VIDALAFSDLSPFWDAVL-DPKLEVVVHAGGEDLRICKIKTGRLPE 102 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 VF ++A+ T + L + +E+LG+ + + +DW LS Q+ YA DV Sbjct: 103 RVFDVQLAAGFT-GLSYPLSLTNLAREVLGVQLVGGESRTDWRKRPLSVAQMNYALEDVR 161 Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 HL L KL+R+GR D +D Sbjct: 162 HLLDLADALRSKLERMGRLDWVIEETRAFLD 192 >gi|115767336|ref|XP_001198019.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus purpuratus] gi|115963545|ref|XP_001176068.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus purpuratus] Length = 228 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 20/195 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVD 72 + R I +D E + L + L +VQ+S DG D + K +L +L Sbjct: 25 STRQTVVIGLDCEGVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKILEH 84 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127 K+ H + D L + FGV+++ VF T IA R N++ G K L ELL Sbjct: 85 NSILKVIHDCKSDTYGLHHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFK-ALCELL 143 Query: 128 GIN--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHL-HALRLQFTEKLQRLGRS 177 G + K ++ D W L++E + YAASD + L ++ L+F L L R Sbjct: 144 GEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNGMLTPLWR- 202 Query: 178 DLATSCCNFLMDRAE 192 DL T C M+ + Sbjct: 203 DLFTWSCKDTMESIQ 217 >gi|320093825|ref|ZP_08025670.1| ribonuclease D [Actinomyces sp. oral taxon 178 str. F0338] gi|319979258|gb|EFW10756.1| ribonuclease D [Actinomyces sp. oral taxon 178 str. F0338] Length = 412 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 G+R +F T+IA+RL + GL + +LG+ + K Q++DWS L + Sbjct: 113 LRAVGLRCPELFDTEIAARLV--GMRRFGLASVAESVLGLALVKDHQAADWSVRPLPKDW 170 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L+YAA DV L L + + +L LGR + AT Sbjct: 171 LRYAALDVELLTELHRRLSTRLHDLGRWEWAT 202 >gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA] gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei] Length = 1808 Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 12/183 (6%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81 +D ET GL +++ ++Q+S + V I + N L +L DE KI Sbjct: 1260 GLDMETTGLEVFGEKIRLIQISVENYPVIIYDMFNITNNNILDGLRKILNDENIVKIIQN 1319 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139 G+FD L Y + +F T IAS+L N +G K N +++ L + + K QQ+S Sbjct: 1320 GKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQQQNSV 1378 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR---SDLATSC----CNFLMDRAE 192 W+ L++ QL YAA D L L + +E+++ +D+ C C+ ++ + Sbjct: 1379 WNNSLLNNNQLFYAARDSSCLLKLYKKLSEQIKAENMQIVNDIENKCILPICDMELNGIK 1438 Query: 193 LDL 195 +DL Sbjct: 1439 VDL 1441 >gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 532 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 9/139 (6%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 DTET L R ++ ++ S G V + + ++ L +L D+ K+FH +FD Sbjct: 10 DTETDSLDFRTGKIKLIAFSKGLNEV-VTTTSVDER----LKSILNDKNIIKVFHNAKFD 64 Query: 86 IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD-WSADD 144 + F + G RV CT + +++ + LK K+ L +++ K+ Q SD W + Sbjct: 65 VG-FFQSKGYRVNNYHCTLLMAQVLGE--EKLSLKALAKKYLDVDMDKSMQHSDNWQETE 121 Query: 145 LSDEQLQYAASDVVHLHAL 163 ++ E + YA DV H AL Sbjct: 122 ITQEHIDYAVKDVEHTRAL 140 >gi|87122723|ref|ZP_01078598.1| Ribonuclease D [Marinomonas sp. MED121] gi|86162020|gb|EAQ63310.1| Ribonuclease D [Marinomonas sp. MED121] Length = 387 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 9/141 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVDTE + ++Q+S G+ V + +A N L+ ++ ++ K+FH Sbjct: 39 IAVDTEFIRRTTFYPITGLIQISEGEHAVLVDPLAIS--NWQPLIDLMTNQSVVKVFHAC 96 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSD 139 D+ V GV P + T++A Y + +K +L I I+K + SD Sbjct: 97 SEDLEVFDRLLGVVPSPFYDTQVAE----AYVSGQWSLSYVKLILAYKNIEIAKDETRSD 152 Query: 140 WSADDLSDEQLQYAASDVVHL 160 W L++ Q +YAA DV+HL Sbjct: 153 WLKRPLTEAQKRYAALDVIHL 173 >gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp. lyrata] gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp. lyrata] Length = 867 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 10/168 (5%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDI--IRIAAGQKNAPNLVGMLVDE 73 R V+ AVD E + C++Q+S D VD +RI G P L + D Sbjct: 273 RGVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIG----PYLREIFKDP 328 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K++KI H DI L FG+ V +F T ASR+ N L+ L+ G+ +K Sbjct: 329 KKKKIMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLGRN--SLEFLLQHFCGVTANK 386 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 Q++DW L +E +YA D +L + +L+R+ + D T Sbjct: 387 EYQNADWRIRPLPEEMTRYAREDTHYLLYIYDVMRLELERMAKDDEHT 434 >gi|213022814|ref|ZP_03337261.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 182 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 3/133 (2%) Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQH 117 G + L +L D K H G D+ V FG P+ T+I A+ R + Sbjct: 22 GISDWSPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--W 79 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G ++E G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G Sbjct: 80 GFASMVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWL 139 Query: 178 DLATSCCNFLMDR 190 A C + R Sbjct: 140 PAALDECRLMQQR 152 >gi|307107266|gb|EFN55509.1| hypothetical protein CHLNCDRAFT_133914 [Chlorella variabilis] Length = 1092 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 2/138 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVD E + C++QLS + I +A P L + D K+ H Sbjct: 270 LAVDLEAHSYRSFQGFCCLMQLSTRSEDLVIDTLALRAHVGPALAPIFADPGVVKVLHGA 329 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+A L FG+ + +F T A+R+ HGL L G K Q +DW Sbjct: 330 DSDVAWLQRDFGLFLANLFDTGQAARVLGM--RGHGLAHLLDFYCGFKADKRFQLADWRV 387 Query: 143 DDLSDEQLQYAASDVVHL 160 L+ E L YA SD HL Sbjct: 388 RPLTPEMLHYARSDTHHL 405 >gi|238919524|ref|YP_002933039.1| ribonuclease D [Edwardsiella ictaluri 93-146] gi|238869093|gb|ACR68804.1| ribonuclease D, putative [Edwardsiella ictaluri 93-146] Length = 371 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 9/171 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IA+DTE + +L +VQL G+ +D + I+ Q V +L + + K+ H Sbjct: 26 IALDTEFVRTRTYYPQLGLVQLYDGEMLSLIDPLTISDWQP----FVDLLRNPQVVKLLH 81 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSSD 139 D+ V + F +P+ T+I + + R ++ G + L +++ K++ +D Sbjct: 82 ASSEDLEVFLHDFQTLPQPLIDTQILAAFSGRPLSS--GFAAMVSAYLQVDLDKSESRTD 139 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 W A LS+ Q YAA+DV +L + + +++ G A C L R Sbjct: 140 WLARPLSERQCDYAAADVYYLLPMAHKLLAEVEACGWLPSALDECQALCRR 190 >gi|229820453|ref|YP_002881979.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333] gi|229566366|gb|ACQ80217.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333] Length = 416 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 80/171 (46%), Gaps = 14/171 (8%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGM--- 69 E AR A+AVD E R +VQ+ G GT I IA P+L G+ Sbjct: 29 EAVARADGAVAVDAERASGYRYGQRAYLVQIRRLGAGTALIDPIAC-----PDLSGLSAA 83 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D E + H D+ L G+ R VF T++A RL + GL +++ LG+ Sbjct: 84 LGDA--EWVLHAANQDLPCLA-EVGLVPRHVFDTELAGRLL--GRERVGLAAIVEQELGL 138 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++K + DWS L ++ L+YAA DV L LR L R G+++ A Sbjct: 139 TLAKEHSAVDWSTRPLREDWLRYAALDVEVLVELRDALERDLVRAGKAEWA 189 >gi|115661808|ref|XP_001202523.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus] gi|115689950|ref|XP_001201160.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus] Length = 234 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 20/195 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVD 72 + R I +D E + L + L +VQ+S DG D + K +L +L Sbjct: 31 STRQTVVIGLDCEGVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKILEH 90 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127 K+ H + D L + FGV+++ VF T IA R N++ G K L ELL Sbjct: 91 NSILKVIHDCKSDTYGLHHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFK-ALCELL 149 Query: 128 GIN--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHL-HALRLQFTEKLQRLGRS 177 G + K ++ D W L++E + YAASD + L ++ L+F L L R Sbjct: 150 GEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNGMLTPLWR- 208 Query: 178 DLATSCCNFLMDRAE 192 DL T C M+ + Sbjct: 209 DLFTWSCKDTMESIQ 223 >gi|315604318|ref|ZP_07879384.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310] gi|315314024|gb|EFU62075.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310] Length = 414 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 +F T+IA+RL + GL +++LG+ + K Q+SDWS L E L+YAA DV Sbjct: 123 LFDTEIAARLV--GLERFGLAAVAEQVLGLGLVKDHQASDWSLRPLPPEWLRYAALDVEL 180 Query: 160 LHALRLQFTEKLQRLGRSDLA 180 L L + +++L ++GR + A Sbjct: 181 LTELYYRLSKRLDQMGRWEWA 201 >gi|238063529|ref|ZP_04608238.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149] gi|237885340|gb|EEP74168.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149] Length = 442 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R R +F T++A+RL + GL ++LLG ++ K Sbjct: 126 EWVLHAASQDLPCL-AEVGLRPRRLFDTELAARLA--GFERVGLAALTEQLLGFSLEKHH 182 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS+ L + L YAA DV L LR +L R G+S A Sbjct: 183 SAADWSSRPLPESWLTYAALDVELLTDLRDALDAELARQGKSAWA 227 >gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2] Length = 380 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + +VQ+ GDG + + ++ +L DE+ K+ H Sbjct: 34 LALDTEFMRVDTFYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 91 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V G P+F T++A+ + G +KE+L I++ K + SDW Sbjct: 92 SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 150 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L++ Q++YAA DV HL + L +L R+ L Sbjct: 151 RPLTEMQMRYAADDVQHLAQVYLALDTRLSEEKRAWL 187 >gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016] gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016] Length = 374 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + +VQ+ GDG + + ++ +L DE+ K+ H Sbjct: 28 LALDTEFMRVDTFYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 85 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V G P+F T++A+ + G +KE+L I++ K + SDW Sbjct: 86 SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 144 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L++ Q++YAA DV HL + L +L R+ L Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWL 181 >gi|146306804|ref|YP_001187269.1| ribonuclease D [Pseudomonas mendocina ymp] gi|145575005|gb|ABP84537.1| ribonuclease D [Pseudomonas mendocina ymp] Length = 377 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 10/161 (6%) Query: 15 CAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 CAA R + +A+DTE + + ++Q+S GD I + L +L + Sbjct: 18 CAAWRALPFVALDTEFMRVDTFYPIAGLLQVSGGDKAYLIDPLCIDDWRP--LAELLQAQ 75 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130 K+ H D+ V G P+F T++A+ Y N G ++ LLGI Sbjct: 76 TVVKVLHSCSEDLEVFLRLTGSLPVPLFDTQVAA----GYLNLGFSMGYSRLVQTLLGIE 131 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K + SDW LS Q+ YAA DV+HL + T++L Sbjct: 132 LPKGETRSDWLQRPLSATQISYAAEDVLHLVEVYQALTQRL 172 >gi|296117768|ref|ZP_06836352.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306] gi|295969499|gb|EFG82740.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306] Length = 411 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 5 RVHEGDIPA--------ECAARYV----DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVD 52 RV EG IP E AAR + IA+DTE DR ++QL D + Sbjct: 6 RVPEGGIPTVVSTRAGVEDAARILAQGSGPIAIDTERASSFRYDDRAFLIQLRRADTPIF 65 Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 ++ + + ++ +V+ ++ + H D+ L + G+ +F T++A RL Sbjct: 66 LVAPEGIRDDVREVLAPVVNGEK-WVVHAAVTDLTSLAW-LGLYPGSLFDTEVAGRLLGI 123 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L +E LGI + K ++DWS LS QL YAA DV L L + +L+ Sbjct: 124 --QNPNLASVTEEFLGIELDKGYGATDWSRFPLSKAQLIYAALDVDTLLELADEMAYELE 181 Query: 173 RLGRSDLA 180 + +++ A Sbjct: 182 QEDKTEWA 189 >gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58] gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192] gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192] gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58] Length = 374 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + +VQ+ GDG + + ++ +L DE+ K+ H Sbjct: 28 LALDTEFMRVDTFYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 85 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V G P+F T++A+ + G +KE+L I++ K + SDW Sbjct: 86 SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 144 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L++ Q++YAA DV HL + L +L R+ L Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWL 181 >gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14] gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1] gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14] Length = 374 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + +VQ+ GDG + + ++ +L DE+ K+ H Sbjct: 28 LALDTEFMRVDTFYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 85 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V G P+F T++A+ + G +KE+L I++ K + SDW Sbjct: 86 SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 144 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L++ Q++YAA DV HL + L +L R+ L Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWL 181 >gi|331019018|gb|EGH99074.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 377 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 7/101 (6%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDN 122 L +L + K+ H D+ VL G P+F T++A+ Y N G Sbjct: 68 LSALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRL 123 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 ++E+L I++ K + SDW LSD Q+ YAA D VHL L Sbjct: 124 VQEVLNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAEL 164 >gi|322514433|ref|ZP_08067476.1| ribonuclease D [Actinobacillus ureae ATCC 25976] gi|322119681|gb|EFX91739.1| ribonuclease D [Actinobacillus ureae ATCC 25976] Length = 371 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+ +DTE + + +L ++QL G+ V +I AP + +L +++ K+ H Sbjct: 28 AVTLDTEFIRIRTYYPKLGLIQLFDGE-QVSLIDPTKIDDFAP-FIELLANQQVVKVLHA 85 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ V + F P+ T+I + + G + L I + K +DW Sbjct: 86 CGEDLEVFQHRFKQLPTPLVDTQIMADFAGIGVSM-GFAKLVAHYLQIELDKGASRTDWL 144 Query: 142 ADDLSDEQLQYAASDVVHL 160 A LS+EQLQYAA+DV +L Sbjct: 145 ARPLSEEQLQYAAADVWYL 163 >gi|33152538|ref|NP_873891.1| ribonuclease D [Haemophilus ducreyi 35000HP] gi|33148762|gb|AAP96280.1| ribonuclease D [Haemophilus ducreyi 35000HP] Length = 373 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 7/171 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 AIA+DTE + + ++QL G+ T +D I+ + + +L + K+ Sbjct: 28 AIALDTEFIRTRSYYPKFGLIQLFDGEQTSLIDPTTIS----DFLPFIDLLANPNIVKVL 83 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ + + F + P+ T+I + + + G + L I + K +D Sbjct: 84 HACSEDLEIFQHQFNQALTPLIDTQIMAAFSGLGLS-IGFAKLVNHYLNIELDKGASRTD 142 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 W A L++ QLQYAA+DV +L + + +L + + C L+++ Sbjct: 143 WLARPLTETQLQYAAADVYYLLPIYQKLQAELAQTNWQEAVNQECQLLVNK 193 >gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1] gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1] Length = 374 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + +VQ+ GDG + + ++ +L DE+ K+ H Sbjct: 28 LALDTEFMRVDTFYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 85 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V G P+F T++A+ + G +KE+L I++ K + SDW Sbjct: 86 SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 144 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L++ Q++YAA DV HL + L +L R+ L Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDTRLSEEKRAWL 181 >gi|223041446|ref|ZP_03611649.1| ribonuclease D [Actinobacillus minor 202] gi|223017704|gb|EEF16111.1| ribonuclease D [Actinobacillus minor 202] Length = 373 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 AIA+DTE + + +L ++QL G+ V +I ++ + +P + +L + K+ H Sbjct: 28 AIALDTEFIRIRSFYPQLGLIQLFDGE-QVSLIDPSSIEDFSP-FIALLANPDVIKVLHA 85 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ V Y F P+ T++ A L R + G ++ L I + K +DW Sbjct: 86 CSEDLEVFEYRFKQLPTPLVDTQVVAGFLNRGISI--GFAKLVEHYLHIELDKGASRTDW 143 Query: 141 SADDLSDEQLQYAASDVVHL----HALRLQFTEKLQRLGRSDLATSCCNFL 187 A LS+ Q QYAA+DV +L H ++ + +E R ++ + C FL Sbjct: 144 LARPLSEIQCQYAAADVFYLLPVYHKMQKELSEN--RWQKA-VEEECQKFL 191 >gi|28871074|ref|NP_793693.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000] gi|28854324|gb|AAO57388.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000] Length = 377 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LSD Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSDTQISYAAEDAVHLAEL 164 >gi|41408900|ref|NP_961736.1| hypothetical protein MAP2802 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397259|gb|AAS05119.1| hypothetical protein MAP_2802 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 428 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 9/182 (4%) Query: 14 ECAARYVD----AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 E AAR +D AVD E +R ++Q+ G GTV I ++ G L Sbjct: 37 EDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRP 96 Query: 69 ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + V E I H D+ L G+R ++ T++A RL + L ++ LL Sbjct: 97 VAEVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFERVNLATMVERLL 153 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 G ++K ++DWS L E L YAA DV L LR + L G++D A ++L Sbjct: 154 GFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGKTDWAAQEFDYL 213 Query: 188 MD 189 + Sbjct: 214 RE 215 >gi|213969693|ref|ZP_03397828.1| ribonuclease D [Pseudomonas syringae pv. tomato T1] gi|301383544|ref|ZP_07231962.1| ribonuclease D [Pseudomonas syringae pv. tomato Max13] gi|302062110|ref|ZP_07253651.1| ribonuclease D [Pseudomonas syringae pv. tomato K40] gi|302130100|ref|ZP_07256090.1| ribonuclease D [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925501|gb|EEB59061.1| ribonuclease D [Pseudomonas syringae pv. tomato T1] Length = 377 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LSD Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSDTQISYAAEDAVHLAEL 164 >gi|184201057|ref|YP_001855264.1| putative ribonuclease D [Kocuria rhizophila DC2201] gi|183581287|dbj|BAG29758.1| putative ribonuclease D [Kocuria rhizophila DC2201] Length = 420 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 74/174 (42%), Gaps = 18/174 (10%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML- 70 AE A +AVDTE R +VQL G GTV I P VG L Sbjct: 37 AEQLAAAHGPVAVDTERASGFRYGQRAFLVQLRREGAGTVLI---------DPEAVGSLA 87 Query: 71 -VDEKR---EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 VDE E + H D+ L + +F T++ RL + GL +EL Sbjct: 88 EVDEALRGVEWVLHAATQDMPCL-AELDMHPDELFDTELGGRLL--GLRKVGLASMTEEL 144 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 LG +SK + DWS L + L YAA DV L LR E+L R G+ D A Sbjct: 145 LGFTLSKEHSAVDWSQRPLPVDWLNYAALDVEVLVQLRWATEERLARAGKLDWA 198 >gi|269126003|ref|YP_003299373.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183] gi|268310961|gb|ACY97335.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183] Length = 437 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 14/158 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78 +AVD E R ++QL G GT I IA P+L G+ L D E + Sbjct: 70 VAVDAERASGYRYGQRAYLIQLRRQGAGTALIDPIAC-----PDLSGLDAALADA--EMV 122 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L G+R R +F T++A RL + GL ++ +LG + K + Sbjct: 123 LHAANQDLPCL-AEVGLRPRRLFDTELAGRLL--GHPKVGLGSMVENVLGFVLEKGHSAV 179 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 DWS L ++ L+YAA DV L LR +L+R G+ Sbjct: 180 DWSTRPLPEDWLRYAALDVELLIELRDALHAELERAGK 217 >gi|239983036|ref|ZP_04705560.1| ribonuclease D [Streptomyces albus J1074] gi|291454868|ref|ZP_06594258.1| ribonuclease D [Streptomyces albus J1074] gi|291357817|gb|EFE84719.1| ribonuclease D [Streptomyces albus J1074] Length = 348 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 13/173 (7%) Query: 13 AECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 AE ARY +AVD E R +VQL G GT I +A P+L G Sbjct: 56 AETVARYAAGSGPLAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC-----PDLSG 110 Query: 69 M-LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + V E E + H D+ L G+ + +F T++A RL + GL ++ +L Sbjct: 111 LGEVVEDAEWLLHAATQDLPCL-RDIGMVPQRLFDTELAGRLA--GFARVGLGAMVENVL 167 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 G ++ K + DWS L + L+YAA DV L LR E+L G+ D A Sbjct: 168 GYSLEKGHSAVDWSTRPLPEPWLRYAALDVELLADLRDALEEELAGQGKLDWA 220 >gi|227875468|ref|ZP_03993609.1| ribonuclease D [Mobiluncus mulieris ATCC 35243] gi|227844022|gb|EEJ54190.1| ribonuclease D [Mobiluncus mulieris ATCC 35243] Length = 397 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 6/175 (3%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 E A ++A+DTE G +VQL D +I A P +G + Sbjct: 24 ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEP--LGAAIG- 80 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K E I H D+ L G+R + +F T++A++L + GL +++LGI + K Sbjct: 81 KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLNF--ERFGLGSLTEQVLGIMLEK 137 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++DWS L L+YAA DV L LR +L G+ D A L+ Sbjct: 138 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 192 >gi|89094008|ref|ZP_01166952.1| ribonuclease D [Oceanospirillum sp. MED92] gi|89081682|gb|EAR60910.1| ribonuclease D [Oceanospirillum sp. MED92] Length = 397 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 8/143 (5%) Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L + DE K+ H D+ + G P+F T+IA+ L + GL+ L+ Sbjct: 81 SLSTLFKDEGVVKVMHAATEDLELFHKEIGALPVPLFDTQIAAALI-NWGFSMGLQRMLE 139 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL-RLQFTEKLQRLGRSDLATSC 183 L + + K + +S+W L+ Q +YAA DV +L A+ +Q E L R G Sbjct: 140 SCLSVQLEKHETTSNWLQRPLTSSQEKYAALDVAYLPAIYEIQRQELLSR-GHFHWVEQE 198 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 C+ ++ A +D +VD FS+ Sbjct: 199 CSAMLADAAID-----DVDGFSY 216 >gi|323499349|ref|ZP_08104325.1| ribonuclease D [Vibrio sinaloensis DSM 21326] gi|323315534|gb|EGA68569.1| ribonuclease D [Vibrio sinaloensis DSM 21326] Length = 371 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 16/194 (8%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQ 60 I ++ A C AR D + +DTE + +L ++QL G+ +D + Sbjct: 5 IVTQTSELVAVCKQARESDVVMLDTEFVRTRTFYPQLGLIQLFDGEHLSLIDPTEL---- 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 ++ V +L D K+ H D+ V +FG P+ T++ + HGL Sbjct: 61 EDMTAFVQLLQDTSVLKVLHACGEDLEVFHNSFGCLPYPMVDTQLMAAFL-----GHGLS 115 Query: 121 DNLKEL----LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L L + + K++ +DW A L+D+QL YAA+DV +L L + + G Sbjct: 116 TGFAALVDHYLQVELDKSESRTDWLARPLTDKQLDYAAADVFYLWPLYEKLLAAVTEAGW 175 Query: 177 SDLATSCCNFLMDR 190 + A + L + Sbjct: 176 WEAAQQESDLLASK 189 >gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6] Length = 576 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 9/133 (6%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 +DTET+ +++ +VQL + + G L +LVD + + H ++ Sbjct: 27 LDTETVS-----EKIRLVQLGNNEDVFIVDLFETGSYGVDFLKDLLVD--KGIVGHNLKY 79 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 D+ L Y +G+ VF T IAS+L ++H L+ LG + K+ Q S+W Sbjct: 80 DLKFL-YRYGIEPYAVFDTMIASQLLGE-LDRHSLQKVAMHYLGEVLDKSLQMSNWGRAV 137 Query: 145 LSDEQLQYAASDV 157 LS EQL+YAA DV Sbjct: 138 LSKEQLEYAALDV 150 >gi|307544648|ref|YP_003897127.1| ribonuclease D [Halomonas elongata DSM 2581] gi|307216672|emb|CBV41942.1| ribonuclease D [Halomonas elongata DSM 2581] Length = 395 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L+ E K+ H D+ V + GV V P+ T+IA L G + ++ +G Sbjct: 91 LLGEGPVKLLHASSEDLEVFLHWAGVTVSPLVDTQIAQALL-GEVPAMGYQKLVEFWVGE 149 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K + S+W LS+ Q YAA DV++L + + L+R GR C L+D Sbjct: 150 TLPKDETRSNWLERPLSETQTTYAALDVIYLLEVWQVQRDALERYGRLGWLEEECRKLVD 209 Query: 190 RAELD 194 +A D Sbjct: 210 QAARD 214 >gi|118463563|ref|YP_882753.1| ribonuclease D [Mycobacterium avium 104] gi|118164850|gb|ABK65747.1| ribonuclease D [Mycobacterium avium 104] Length = 428 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 9/182 (4%) Query: 14 ECAARYVD----AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 E AAR +D AVD E +R ++Q+ G GTV I ++ G L Sbjct: 37 EDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRP 96 Query: 69 ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + V E I H D+ L G+R ++ T++A RL + L ++ LL Sbjct: 97 VAEVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFERVNLATMVERLL 153 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 G ++K ++DWS L E L YAA DV L LR + L G++D A ++L Sbjct: 154 GFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGKTDWAAQEFDYL 213 Query: 188 MD 189 + Sbjct: 214 RE 215 >gi|239946745|ref|ZP_04698498.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] gi|239921021|gb|EER21045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] Length = 281 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 7/169 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ + G +D A + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F + VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 79 APREDLEIFYNLFKILPSNVFDIQIAANIC-GFGKQLSYNDLCYKLIGITIDKTHQKSNW 137 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ + L YA DV +L+ + + + R ++ + + L+D Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLD 186 >gi|306818778|ref|ZP_07452500.1| ribonuclease D [Mobiluncus mulieris ATCC 35239] gi|304648464|gb|EFM45767.1| ribonuclease D [Mobiluncus mulieris ATCC 35239] Length = 422 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 6/175 (3%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 E A ++A+DTE G +VQL D +I A P +G + Sbjct: 49 ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEP--LGTAIG- 105 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K E I H D+ L G+R + +F T++A++L + GL +++LGI + K Sbjct: 106 KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLNF--ERFGLGSLTEQVLGIMLEK 162 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++DWS L L+YAA DV L LR +L G+ D A L+ Sbjct: 163 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 217 >gi|114562909|ref|YP_750422.1| ribonuclease D [Shewanella frigidimarina NCIMB 400] gi|114334202|gb|ABI71584.1| ribonuclease D [Shewanella frigidimarina NCIMB 400] Length = 370 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 7/151 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + +L ++Q G T+ +I A +P +L D+ K+ H Sbjct: 26 LVLDTEFVRTRTYYAKLGLIQAYDGK-TLALIDPVAITDLSP-FWQLLTDQNIVKLVHSC 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISKAQQSSDW 140 D+ V + + P+F ++IA+ HGL + L + I K + +DW Sbjct: 84 SEDLEVFAHYGECQPSPLFDSQIAASFAGL---GHGLGYAKLVDACLQVEIDKGESRTDW 140 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 LSD QLQYAA+DV +L+ L Q +KL Sbjct: 141 MNRPLSDAQLQYAANDVFYLYQLYPQLQQKL 171 >gi|110834629|ref|YP_693488.1| ribonuclease D [Alcanivorax borkumensis SK2] gi|110647740|emb|CAL17216.1| ribonuclease D [Alcanivorax borkumensis SK2] Length = 357 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 9/180 (5%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 +DTE + +L +VQ+ G V I I + + P L+ + + + H Sbjct: 27 LDTEFMRERTFWPQLALVQVHDG---VRIRLIDTTEVDGPTLLPVF--QNHTLVMHACSE 81 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 D+ + G + T+IA+ L+ Q G + ++ LLG+++ K ++W Sbjct: 82 DLEAIATFTGQYPAAIEDTQIAAALS-GEDMQWGYQKVVQMLLGVDLPKGATRTNWLKRP 140 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWENV 201 LSDEQL YA DV +L + E+L LGR C L+ +A +L W NV Sbjct: 141 LSDEQLHYAEDDVKYLPEVAGILAERLDGLGRRAWWEEECARLLKQARSQVLPQDAWRNV 200 >gi|255319565|ref|ZP_05360778.1| ribonuclease D, processes tRNA [Acinetobacter radioresistens SK82] gi|262379863|ref|ZP_06073019.1| ribonuclease D [Acinetobacter radioresistens SH164] gi|255303363|gb|EET82567.1| ribonuclease D, processes tRNA [Acinetobacter radioresistens SK82] gi|262299320|gb|EEY87233.1| ribonuclease D [Acinetobacter radioresistens SH164] Length = 380 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 4/115 (3%) Query: 75 REKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIA-SRLTRTYTNQHGLKDNLKELLGINIS 132 ++ IFH DI ++++ G + VF T++ S L + Q ++ LK +L I+I Sbjct: 72 QQNIFHACSEDIDLIYHYAGPYSLSNVFDTQVGLSFLGQGL--QVSYQNALKLVLDIDIE 129 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 K Q SDW A L+DEQL YAA+DV++L L Q +L++ + C L Sbjct: 130 KDQTRSDWLARPLTDEQLHYAANDVLYLGQLAEQIKTELKQKNLYECVLEDCKHL 184 >gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428] gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428] Length = 352 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 10/165 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PG-DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 I +DTE L ++LC++Q+S PG D +D + + Q G +E I H Sbjct: 24 IPIDTEADSLHCYFEKLCLIQISVPGHDLLIDPLAGISLQPLFEAFAG------KELIIH 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ +L PVF T IA+RL + L +K + ++KA Q ++W Sbjct: 78 GADYDLRLLRRVGFTVTAPVFDTMIAARLC--GIEEFSLAALIKRYFDVALTKASQKANW 135 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + LS + YA D +L + +L RL R + C+ Sbjct: 136 ARRPLSPQMADYAVKDTHYLLEIAGILEAELTRLDRMEWFRQSCD 180 >gi|269977281|ref|ZP_06184254.1| ribonuclease D [Mobiluncus mulieris 28-1] gi|307701108|ref|ZP_07638133.1| putative ribonuclease D [Mobiluncus mulieris FB024-16] gi|269934584|gb|EEZ91145.1| ribonuclease D [Mobiluncus mulieris 28-1] gi|307614103|gb|EFN93347.1| putative ribonuclease D [Mobiluncus mulieris FB024-16] Length = 422 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 6/175 (3%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 E A ++A+DTE G +VQL D +I A P +G + Sbjct: 49 ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEP--LGAAIG- 105 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K E I H D+ L G+R + +F T++A++L + GL +++LGI + K Sbjct: 106 KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLNF--ERFGLGSLTEQVLGIMLEK 162 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++DWS L L+YAA DV L LR +L G+ D A L+ Sbjct: 163 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 217 >gi|118618645|ref|YP_906977.1| hypothetical protein MUL_3315 [Mycobacterium ulcerans Agy99] gi|183982048|ref|YP_001850339.1| hypothetical protein MMAR_2035 [Mycobacterium marinum M] gi|118570755|gb|ABL05506.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] gi|183175374|gb|ACC40484.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 435 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 9/180 (5%) Query: 14 ECAARYVD----AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 E AA +D AVD E +R ++Q+ G GTV I ++ G L Sbjct: 41 EAAATLLDRGSGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGGDPLTVLQP 100 Query: 69 ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + V K E I H D+ L G+R ++ T++A RL ++ L ++ LL Sbjct: 101 LAEVLAKDEWILHSADQDLPCL-AEVGMRPSALYDTELAGRLA--GYDRVNLATMVERLL 157 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 G+ + K ++DWS L + L YAA DV L LR + L G+SD A +L Sbjct: 158 GMGLVKGHGAADWSKRPLPSDWLNYAALDVELLIELRSAISGVLAEQGKSDWAAQEFEYL 217 >gi|148272845|ref|YP_001222406.1| putative ribonuclease D [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830775|emb|CAN01715.1| putative ribonuclease D [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 496 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+A L G+ + +F T++ASRL + GL ++ELLGI+++K Sbjct: 175 EWVLHAASQDLACL-REVGLDPQRIFDTELASRLL--GLPRVGLGTVVEELLGIHLAKEH 231 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L L YAA DV L +R + +L+ G++ +A Sbjct: 232 SAADWSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTGIA 276 >gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum] Length = 860 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 9/153 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVD E C++Q+S D T II A + L + D K K+FH Sbjct: 280 IAVDLEHHSYRSFLGITCLIQISTLD-TDYIIDALALHDHLSILNEVFTDPKIVKVFHGS 338 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG---LKDNLKELLGINISKAQQSSD 139 D+ L FGV V +F T +A+RL QHG L L+ + IN +K Q +D Sbjct: 339 DSDLMWLQRDFGVYVVNLFDTGVAARLL-----QHGRFSLSYLLQRYVNINPNKKYQLAD 393 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 W L +E ++YA +D +L + + +LQ Sbjct: 394 WRIRPLPNELIEYARTDTHYLLHIASRMCRELQ 426 >gi|290475404|ref|YP_003468292.1| RNase D, processes tRNA [Xenorhabdus bovienii SS-2004] gi|289174725|emb|CBJ81524.1| RNase D, processes tRNA precursor [Xenorhabdus bovienii SS-2004] Length = 385 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 7/143 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IA+DTE + +L ++QL G+ +D + I+ Q +L D K H Sbjct: 35 IALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLDISEWQP----FRELLTDRDVLKFIH 90 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 G D+ V + +F P+ T++ + + G + + L + + K++ +DW Sbjct: 91 AGSEDLEVFWNSFQCLPTPMIDTQVLAAFI-GHPMSCGFATLVAQYLHVELDKSESRTDW 149 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 A LS++Q +YAA+DV +L L Sbjct: 150 LARPLSEKQCEYAAADVYYLLPL 172 >gi|187735079|ref|YP_001877191.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835] gi|187425131|gb|ACD04410.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835] Length = 352 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 10/178 (5%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDE 73 AA+ + +D E L ++++C++Q + G+ +D + I + P + + Sbjct: 16 AAQPAGRVVLDLEADSLHRYQEKICLIQYADETGSCLIDPLSI---EDMGPFYNWL---K 69 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + E H +D+++ + ++ T+ A+RL Q GL ++ GI +SK Sbjct: 70 ETEVWMHGADYDMSLFQNAWETLPAMIWDTQTAARLLGF--RQFGLAALVEHFHGITLSK 127 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 + Q +DW+ LS + YA +DV ++ + + T L++ GR C M+RA Sbjct: 128 SSQKADWARRPLSPTMVTYALNDVNYMLDMADKLTAALRKKGRMGWFEEICRHSMERA 185 >gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus] Length = 574 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 70/143 (48%), Gaps = 16/143 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTET G +R+ +VQL + T +I + P + L+ EK I H Sbjct: 25 LYLDTETTG-----NRIRLVQLGDDEKTY-VIDLYEIHDITP--LRELISEKG-VIGHNL 75 Query: 83 RFDIAVLFYTFGVRVRPV--FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +FD L Y ++ P+ F T IAS L +H L + LLG + K+ Q SDW Sbjct: 76 KFD---LHYLMNYQIEPLATFDTMIASFLLGY--ERHSLNHLVGNLLGYTLDKSYQLSDW 130 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 A LSD QL+YAA DV L L Sbjct: 131 GAPVLSDAQLKYAAKDVDVLREL 153 >gi|24374123|ref|NP_718166.1| ribonuclease D [Shewanella oneidensis MR-1] gi|24348616|gb|AAN55610.1|AE015699_8 ribonuclease D [Shewanella oneidensis MR-1] Length = 367 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 77 KIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISK 133 K+ H D+ V F +G R P+F ++IA+ L HGL ++ LG I K Sbjct: 76 KLVHSCSEDLEV-FAHYGQRQPTPLFDSQIAASLCGM---GHGLGYAKLVETCLGEVIDK 131 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + +DW L+D QL YAA+DV++L+ L Q EKLQ R D Sbjct: 132 GESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQDRLD 176 >gi|115665303|ref|XP_001177704.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus] gi|115976409|ref|XP_001186302.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus] Length = 579 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 18/160 (11%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVDEK 74 R I +D E +GL L +VQ+S DG D + K +L +L Sbjct: 387 RETVVIGLDCEGVGLGRAGGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKILEHNS 446 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLKELLGI 129 K+ H + D L++ FGV+++ VF T IA R L R + Q G K L ELLG Sbjct: 447 ILKVIHDCKSDAYSLYHGFGVKLKNVFDTSIAMRTIMEQLNRNRSYQVGFK-ALCELLGE 505 Query: 130 N--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHL 160 + K ++ D W L++E + YAASD + L Sbjct: 506 GASHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCL 545 >gi|300864534|ref|ZP_07109398.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300337492|emb|CBN54546.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 880 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 18/179 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVGMLVD-----E 73 + I DTE RL ++Q+ P D T D I + P LV +D Sbjct: 21 EIIWADTEVADWQTPNPRLSLIQILADPNDLTGDFAYIL-DVLDKPELVENFIDLIMANP 79 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLT--RTYTNQHGLKDNLKELLGIN 130 EK+FH +D+ L T + + V CT KIA +L+ R LK L Sbjct: 80 TIEKVFHNSSYDLRYLGKT---QAKNVTCTWKIAQKLSLERLQVPNRQLKTLAAGLCKFT 136 Query: 131 -ISKAQQSSDWSADDLSDEQLQYAASDVVHL---HALRLQFTEKLQRLGRSDLATSCCN 185 I+K +Q+SDW L+ +QL YA D V+L H L+ T + + +S+++ N Sbjct: 137 EINKQEQTSDWGRRPLTQKQLDYAKMDTVYLAGVHRRLLELTNQKHLIIKSNISMPPAN 195 >gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa] gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa] Length = 858 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 10/147 (6%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLVGMLVDE 73 R V+ AVD E + C++Q+S D VD + RI G P L + D Sbjct: 250 RGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVG----PYLREVFKDP 305 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + K+ H D+ L FG+ + +F T ASR+ + N L+ L G+ +K Sbjct: 306 AKRKVMHGADRDVVWLQRDFGIYICNLFDTGQASRVLKLERN--SLEHLLHHFCGVTANK 363 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160 Q++DW L DE ++YA D +L Sbjct: 364 EYQNADWRLRPLPDEMIRYAREDTHYL 390 >gi|294790936|ref|ZP_06756094.1| putative ribonuclease D [Scardovia inopinata F0304] gi|294458833|gb|EFG27186.1| putative ribonuclease D [Scardovia inopinata F0304] Length = 433 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 4/103 (3%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKAQQSSDWSADDLSDE 148 +Y G+R +F T+ A+RL N H GL ++ LG+ ++K ++DWS L+ + Sbjct: 102 YYALGMRPSRLFDTERAARL---LGNAHFGLAAVTEKYLGLTLAKEHSAADWSYRPLNRD 158 Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 YAA DV L LR + +L+R G+ + A FL+ + Sbjct: 159 MRNYAALDVEVLIELRNTLSAELRRSGKEEWAQEDFAFLLKKG 201 >gi|289706235|ref|ZP_06502598.1| putative ribonuclease D [Micrococcus luteus SK58] gi|289557074|gb|EFD50402.1| putative ribonuclease D [Micrococcus luteus SK58] Length = 416 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 3/101 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R +F T++A+R+ + GL L+ELLG+ ++K Sbjct: 98 EWILHAASQDLPCLAEQ-GLRPDRLFDTELAARVA--GLPRVGLAAVLEELLGVTLAKEH 154 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++DWS L + L YAA DV L LR +L+ G+ Sbjct: 155 SAADWSVRPLPEAMLAYAALDVELLVPLREALIARLEADGK 195 >gi|170782038|ref|YP_001710370.1| putative ribonuclease [Clavibacter michiganensis subsp. sepedonicus] gi|169156606|emb|CAQ01757.1| putative ribonuclease [Clavibacter michiganensis subsp. sepedonicus] Length = 443 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+A L G+ + +F T++ASRL + GL ++ELLGI+++K Sbjct: 122 EWVLHAASQDLACL-REVGLDPQRIFDTELASRLL--GLPRVGLGTVVEELLGIHLAKEH 178 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L L YAA DV L +R + +L+ G++ +A Sbjct: 179 SAADWSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTAIA 223 >gi|240169721|ref|ZP_04748380.1| hypothetical protein MkanA1_10437 [Mycobacterium kansasii ATCC 12478] Length = 433 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 11/187 (5%) Query: 1 MTTIRVHEGDIPAECAARYVD----AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIR 55 M + V G I E AA +D AVD E +R ++Q+ G GTV I Sbjct: 30 MPDLSVTVGQI--EAAAELLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDP 87 Query: 56 IAAGQKNAPNLVGML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 ++ G + A L + V + E I H D+ L G+R ++ T++A RL Sbjct: 88 VSHGGEPATALQPVAEVLRQDEWILHSADQDLPCL-AEVGMRPSALYDTELAGRLA--GF 144 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 ++ L ++ LLG+ ++K ++DWS L L YAA DV L LR ++ L Sbjct: 145 DRVNLATMVERLLGLGLAKGHGAADWSKRPLPPAWLNYAALDVELLIELRAAISQVLTEQ 204 Query: 175 GRSDLAT 181 G++ A Sbjct: 205 GKTGWAA 211 >gi|254776017|ref|ZP_05217533.1| ribonuclease D [Mycobacterium avium subsp. avium ATCC 25291] Length = 416 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 9/182 (4%) Query: 14 ECAARYVD----AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 E AAR +D AVD E +R ++Q+ G GTV I ++ G L Sbjct: 25 EDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRP 84 Query: 69 ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + V E I H D+ L G+R ++ T++A RL + L ++ LL Sbjct: 85 VAEVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFERVNLATMVERLL 141 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 G ++K ++DWS L E L YAA DV L LR + L G++D A ++L Sbjct: 142 GFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAGQGKTDWAAQEFDYL 201 Query: 188 MD 189 + Sbjct: 202 RE 203 >gi|37526051|ref|NP_929395.1| ribonuclease D [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785481|emb|CAE14428.1| Ribonuclease D (RNase D) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 375 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 7/177 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73 A+ +A+DTE + +L ++QL G+ +D + I Q ++ Sbjct: 18 GAKKYSKVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLNITNWQP----FRELITHP 73 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + K+ H G D+ V F P+ T++ + + G + E + + + K Sbjct: 74 QILKLLHAGSEDLEVFLNAFQCLPEPMIDTQVLAAFI-GHPLSCGFAALVAEYIHVELDK 132 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++ +DW A LS++Q +YAA+DV +L L + G + AT C + R Sbjct: 133 SESRTDWLARPLSEKQCEYAAADVYYLLPLADILMTATAQAGYMEAATGECRLISRR 189 >gi|323495020|ref|ZP_08100109.1| ribonuclease D [Vibrio brasiliensis LMG 20546] gi|323310677|gb|EGA63852.1| ribonuclease D [Vibrio brasiliensis LMG 20546] Length = 346 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 19/148 (12%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--- 122 V +L D K+ H D+ V +FG P+ T++ + HGL Sbjct: 41 FVHLLQDTSVLKVLHACGEDLEVFQNSFGCLPYPMVDTQLMAAFL-----GHGLSTGFAA 95 Query: 123 -LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + E L + + K++ +DW A L+D+QL+YAA+DV +L L Q E + + G A Sbjct: 96 LVNEYLNVELDKSESRTDWLARPLTDKQLEYAAADVYYLLPLYEQLFENITQAGWWQAAQ 155 Query: 182 SCCNFLM---------DRAELDLLG-WE 199 + + +RA LD+ G W+ Sbjct: 156 QESDLIASKRIKTVNPERAYLDVKGAWQ 183 >gi|167623763|ref|YP_001674057.1| ribonuclease D [Shewanella halifaxensis HAW-EB4] gi|167353785|gb|ABZ76398.1| ribonuclease D [Shewanella halifaxensis HAW-EB4] Length = 369 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 11/162 (6%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + +DTE + RL ++Q G I +A N +L E K+ H Sbjct: 24 DLLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPLAVS--NLELFWQLLNKESSVKLLH 81 Query: 81 YGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGL--KDNLKELLGINISKAQQ 136 D+ V F +G + +P +F ++IA+ L HGL +++ L +++ K + Sbjct: 82 SCSEDLEV-FARYG-QCQPTNLFDSQIAAGLAGM---GHGLGYAKLVEQTLEVSLDKGES 136 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +DW L++ QL YAA+DV +L+ L Q +KL+ GR D Sbjct: 137 RTDWLKRPLTEAQLNYAANDVYYLYKLYPQLVDKLKEQGRLD 178 >gi|327479994|gb|AEA83304.1| ribonuclease D [Pseudomonas stutzeri DSM 4166] Length = 374 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 10/161 (6%) Query: 15 CAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 CA R + +AVDTE + + +VQ+ GDG + ++ +L D Sbjct: 18 CAEWRQLPFVAVDTEFMRVDTFYPIAGLVQV--GDGRRAYLIDPLAVRDWHPFATLLDDA 75 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130 K+ H D+ VL G +P+F T++A+ Y N G ++ +LGI Sbjct: 76 AVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAA----GYLNIGFSMGYSRLVQAVLGIE 131 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K + SDW LS+ Q++YAA D HL L KL Sbjct: 132 LPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKL 172 >gi|325924432|ref|ZP_08185961.1| ribonuclease D [Xanthomonas gardneri ATCC 19865] gi|325545080|gb|EGD16405.1| ribonuclease D [Xanthomonas gardneri ATCC 19865] Length = 364 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 6/173 (3%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 H ++ A I +DTE + +L +VQ++ G+ + I + G A Sbjct: 6 THPSELTQRLHAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 63 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L K+ H D+ GV RP+F T+IA+ L K ++E Sbjct: 64 LGEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175 + G ++K + SDW LS QL+YAA DV +L A+ + + +L RLG Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELSRRLTEQDRLG 175 >gi|169630071|ref|YP_001703720.1| hypothetical protein MAB_2988 [Mycobacterium abscessus ATCC 19977] gi|169242038|emb|CAM63066.1| Conserved hypothetical protein (putative exonuclease) [Mycobacterium abscessus] Length = 400 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 62 NAPNLVGMLVDE--KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 N P +G +VD E I H D+ L ++ ++ T++A RL + L Sbjct: 79 NVPGSLGPIVDALGADEWILHAADQDLPCL-AELAMKPPSLYDTELAGRLA--GFEKVNL 135 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + LLG+ ++K ++DWS L D+ L YAA DV L LR + E L G+++ Sbjct: 136 ASMVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVELRDKIAEVLAEQGKTEW 195 Query: 180 A 180 A Sbjct: 196 A 196 >gi|311898875|dbj|BAJ31283.1| putative ribonuclease D [Kitasatospora setae KM-6054] Length = 411 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 14/162 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78 +AVD E R ++QL G GT I IA P+L G+ L D E + Sbjct: 48 VAVDAERASGYRYGQRAYLIQLRRQGAGTALIDPIAC-----PDLTGLNAALADT--EWV 100 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ LF G+ +F T++A RL + GL + +LG++++K + Sbjct: 101 VHAATQDLPCLF-EVGMHPGVLFDTELAGRLA--GFPRVGLGPMTENVLGLSLAKEHSAV 157 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DWS L + L+YAA DV L LR +L R G+ D A Sbjct: 158 DWSTRPLPEPWLRYAALDVEVLVDLRDALEAELDRQGKLDWA 199 >gi|330941897|gb|EGH44622.1| ribonuclease D [Pseudomonas syringae pv. pisi str. 1704B] Length = 377 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVLHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164 >gi|284031654|ref|YP_003381585.1| 3'-5' exonuclease [Kribbella flavida DSM 17836] gi|283810947|gb|ADB32786.1| 3'-5' exonuclease [Kribbella flavida DSM 17836] Length = 422 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+A L G+ R VF T++A RL + GL + E+LG + K Sbjct: 104 EWIIHAANQDLACL-AEVGMVPRQVFDTELAGRLL--GYPKVGLASLVSEVLGYRMRKEH 160 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L L YAA DV L LR ++L+R G+ + A Sbjct: 161 SAADWSTRPLPGPWLVYAALDVEMLIELRDAIEQELRREGKWEWA 205 >gi|146281747|ref|YP_001171900.1| ribonuclease D [Pseudomonas stutzeri A1501] gi|145569952|gb|ABP79058.1| ribonuclease D [Pseudomonas stutzeri A1501] Length = 401 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 10/161 (6%) Query: 15 CAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 CA R + +AVDTE + + +VQ+ GDG + ++ +L D Sbjct: 45 CAEWRQLPFVAVDTEFMRVDTFYPIAGLVQV--GDGRRAYLIDPLAVRDWHPFATLLDDA 102 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130 K+ H D+ VL G +P+F T++A+ Y N G ++ +LGI Sbjct: 103 AVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAA----GYLNIGFSMGYSRLVQAVLGIE 158 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K + SDW LS+ Q++YAA D HL L KL Sbjct: 159 LPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKL 199 >gi|289628944|ref|ZP_06461898.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651074|ref|ZP_06482417.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 2250] gi|298486131|ref|ZP_07004194.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159138|gb|EFI00196.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868058|gb|EGH02767.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 377 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164 >gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246] Length = 203 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 12/129 (9%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + +AVDTET GL P RDR+ ++Q++ G +D+ A + L L D +E Sbjct: 47 WAGPVAVDTETTGLDPARDRVRLIQVAAGQDVALIDVFAFADPVADLRPLFAALAD--KE 104 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----RTYTN---QHGLKDNLKELLGI 129 ++ H +FD+ L F VF T +ASR+ R +N +HGL D LG Sbjct: 105 QVGHNLQFDLRFL-APFEFVPGKVFDTILASRVRHAGDRAESNGRFRHGLGDAAARELGR 163 Query: 130 NISKAQQSS 138 ++ K++Q+ Sbjct: 164 SLDKSEQTP 172 >gi|330959294|gb|EGH59554.1| ribonuclease D [Pseudomonas syringae pv. maculicola str. ES4326] Length = 377 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164 >gi|307946769|ref|ZP_07662104.1| ribonuclease D [Roseibium sp. TrichSKD4] gi|307770433|gb|EFO29659.1| ribonuclease D [Roseibium sp. TrichSKD4] Length = 330 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 22/137 (16%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK----- 124 + D K+FH R D+ ++++ + P+F +++A+ + G D++ Sbjct: 1 MADRNVTKVFHAARQDVEIVYHLGKLIPAPLFDSQVAAMVC-------GFGDSISYDQLV 53 Query: 125 -ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ++ G I K+ + +DWS L+ +QL+YA +DV HL + L GRS Sbjct: 54 YKVTGAQIDKSSRFTDWSRRPLTQKQLEYALADVTHLRDVYQFLKANLAEQGRS------ 107 Query: 184 CNFLMDRAELDLLGWEN 200 +++ D E+++L EN Sbjct: 108 -HWVQD--EMEILTSEN 121 >gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827] gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827] Length = 414 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 7/159 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +AVDTE R +VQL G GTV + IA G + P LV L E E + H Sbjct: 50 VAVDTERASGYRYSQRAYLVQLRREGAGTVLVDPIALGGRLDP-LVEAL--EGTEWVLHA 106 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L G+ +F T++A RL + L ++ LLG + K ++DWS Sbjct: 107 ASQDLPCL-AELGLTPSALFDTELAGRLA--GFERVALGTLVELLLGYRLEKGHGAADWS 163 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L + L YAA DV L LR E+L++ G+ + A Sbjct: 164 RRPLPADWLNYAALDVELLVQLRDVLEEELRQQGKLEWA 202 >gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi] gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi] Length = 1429 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81 +D ET GL +++ ++Q++ + V I + N L +L DE KI Sbjct: 1246 GLDMETTGLEVFGEKIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVKIIQN 1305 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139 G+FD L Y + +F T IAS+L N +G K N +++ L + + K QQ+S Sbjct: 1306 GKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQQQNSV 1364 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 W+ L++ QL YAA D L L + +E++ Sbjct: 1365 WNNSLLNNNQLFYAARDSSCLLKLYKKLSEQI 1396 >gi|330894750|gb|EGH27411.1| ribonuclease D [Pseudomonas syringae pv. mori str. 301020] Length = 377 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164 >gi|157375657|ref|YP_001474257.1| ribonuclease D [Shewanella sediminis HAW-EB3] gi|157318031|gb|ABV37129.1| ribonuclease D [Shewanella sediminis HAW-EB3] Length = 369 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 3/156 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + RL ++Q G I IA G N +L + + + H Sbjct: 26 LVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPIAVG--NLSEFWSLLTEPEITTVLHSC 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V + +F ++IA+ L + + G +++ L I + K + +DW Sbjct: 84 SEDLEVFARNGQCQPIRLFDSQIAASLC-GFGHGLGYAKLVEQTLNIALDKGESRTDWMK 142 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 LS QL YAA+DV +L+ L Q +KL+ R D Sbjct: 143 RPLSKAQLTYAANDVYYLYELYPQLIQKLEDTDRLD 178 >gi|300867748|ref|ZP_07112393.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506] gi|300334331|emb|CBN57565.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506] Length = 433 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT---NQHGLKDNLKELLGI-NI 131 EK+ H +DI L R + + CT +R Y H LK ++ L GI N+ Sbjct: 81 EKVMHNASYDIRFLG---NDRAQNITCTLKLARKIPYYVLPLPNHKLKTLIEALCGIPNV 137 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHL 160 KA+Q DW L+++QL+YA DVV+L Sbjct: 138 DKAEQGGDWGKRPLTEKQLEYAKMDVVYL 166 >gi|257483935|ref|ZP_05637976.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320325216|gb|EFW81283.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. B076] gi|320327790|gb|EFW83798.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4] gi|330989388|gb|EGH87491.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013134|gb|EGH93190.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 377 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164 >gi|71735861|ref|YP_273799.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556414|gb|AAZ35625.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A] Length = 377 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164 >gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii] Length = 1813 Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81 +D ET GL +++ ++Q++ + V I + N L +L DE KI Sbjct: 1265 GLDMETTGLEVFGEKIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVKIIQN 1324 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139 G+FD L Y + +F T IAS+L N +G K N +++ L + + K QQ+S Sbjct: 1325 GKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQQQNSV 1383 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 W+ L++ QL YAA D L L + +E++ Sbjct: 1384 WNNSLLNNNQLFYAARDSSCLLKLYKKLSEQI 1415 >gi|254411454|ref|ZP_05025231.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420] gi|196181955|gb|EDX76942.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420] Length = 862 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 20/152 (13%) Query: 25 VDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLV-----GMLVDEKREK 77 +DTE RL ++Q+ P D T D I N P++V ++V+ EK Sbjct: 24 LDTEVADWQTSNPRLSLIQILADPTDRTGDRAYIFDVLDN-PDIVRDFVAQIMVNPNIEK 82 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGI------- 129 +FH FD+ F + + V CT K+ +LT+ + + L+ + K+L + Sbjct: 83 VFHNASFDLK--FLGGKHQAQNVTCTFKLVRKLTKK-SRKTPLQVSNKQLKTLAVELCHF 139 Query: 130 -NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 N+ K +QSSDW L+ +QL YA D V+L Sbjct: 140 TNVDKTEQSSDWGQRPLTPKQLHYAKMDTVYL 171 >gi|330877463|gb|EGH11612.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4] Length = 307 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 17/148 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKI 78 +A+DTE + + ++Q+ GDG +D + I Q L +L + K+ Sbjct: 27 VALDTEFMRVDTFYPIAALLQI--GDGQSAWLIDPLLINDWQP----LSALLENPDVIKV 80 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQ 135 H D+ VL G P+F T++A+ Y N G ++E+L I++ K + Sbjct: 81 VHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPKGE 136 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHAL 163 SDW LS+ Q+ YAA D VHL L Sbjct: 137 TRSDWLQRPLSETQISYAAEDAVHLAEL 164 >gi|262166092|ref|ZP_06033829.1| ribonuclease D [Vibrio mimicus VM223] gi|262025808|gb|EEY44476.1| ribonuclease D [Vibrio mimicus VM223] Length = 328 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 V +L D K+ H D+ V FG P+ T+I + Y G +++ Sbjct: 21 FVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQD 79 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ G + A Sbjct: 80 QLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAGWWEAA 134 >gi|238650864|ref|YP_002916719.1| ribonuclease D [Rickettsia peacockii str. Rustic] gi|238624962|gb|ACR47668.1| ribonuclease D [Rickettsia peacockii str. Rustic] Length = 281 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ + G +D A + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYTQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 79 APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 137 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ + L YA DV +L+ + + + R ++ + + L+D Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKELNNIIVRNNLTNKYQTTLSALLD 186 >gi|189218664|ref|YP_001939305.1| Ribonuclease D [Methylacidiphilum infernorum V4] gi|189185522|gb|ACD82707.1| Ribonuclease D [Methylacidiphilum infernorum V4] Length = 324 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 6/133 (4%) Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + E I H +D+ +L + R +F T IA++L + +L + ++K Sbjct: 29 RSEWICHGMDYDLKMLRKAGCPQPRTIFDTHIAAKLCGFEAVGYARLVSL--FFQVKLTK 86 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 Q +DWS L + Y A DV++L L+ T L+ LGR + C + + E Sbjct: 87 EHQKADWSRRPLPPSLINYTAKDVLYLEKLKEILTRLLKSLGRWEWMEQSCKRIQRKIEN 146 Query: 194 DLLG----WENVD 202 LG WE ++ Sbjct: 147 SFLGSPKEWERIE 159 >gi|229586838|ref|YP_002845339.1| Ribonuclease D [Rickettsia africae ESF-5] gi|228021888|gb|ACP53596.1| Ribonuclease D [Rickettsia africae ESF-5] Length = 281 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ + G +D A + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 79 APREDLEIFYNLFNTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 137 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ + L YA DV +L+ + + + R ++ + + L+D Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKEINNIIVRNNLTNKYQTTLSALLD 186 >gi|166711789|ref|ZP_02242996.1| ribonuclease D [Xanthomonas oryzae pv. oryzicola BLS256] Length = 363 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 6/156 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +DTE + +L +VQ++ G+ + I + A L L K+ H Sbjct: 23 IGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPSMNAA--LKEWLTATDIVKVMHSA 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ GV RP+F T+IA+ L K ++E+ G ++K + SDW Sbjct: 81 SEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQEVTGTLLTKGETRSDWMR 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175 LS QL+YAA DV +L A+ + T +L RLG Sbjct: 140 RPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLG 175 >gi|145336746|ref|NP_175846.3| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana] gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana] gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana] Length = 637 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 6/148 (4%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVD 72 A + V+ AVD E + C++Q+S D VDI ++ P L + D Sbjct: 129 AALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKL--WDHIGPYLRELFKD 186 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K++K+ H DI L FG+ V +F T ASR+ + N L+ LK G+ + Sbjct: 187 PKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERN--SLEFLLKHYCGVAAN 244 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHL 160 K Q +DW L D +YA D +L Sbjct: 245 KEYQKADWRIRPLPDVMKRYAREDTHYL 272 >gi|90020985|ref|YP_526812.1| ribonuclease D [Saccharophagus degradans 2-40] gi|89950585|gb|ABD80600.1| ribonuclease D [Saccharophagus degradans 2-40] Length = 386 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 5/167 (2%) Query: 14 ECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 EC R+ +AVDTE + ++Q++ DG + + + +LV Sbjct: 21 ECCERWQSKKLLAVDTEFMRSQTYYPIAGLIQVN--DGEANYLLDPTTIDDFSPFAEILV 78 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D+ K H D+ V +++FG + +F T+IA G ++ +LG+ + Sbjct: 79 DDDIIKAIHSCSEDLEVFYHSFGFLPQRLFDTQIAGAFV-NLGYSMGFARMVQGVLGVEL 137 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K + SDW LS Q YAA DV +L+ L + +L+ R D Sbjct: 138 PKTETRSDWLQRPLSVAQKHYAALDVEYLYLLAGKLLTELKAKERLD 184 >gi|145224502|ref|YP_001135180.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK] gi|145216988|gb|ABP46392.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK] Length = 424 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 11/170 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKN----APNLVGMLVDEKREK 77 AVD E +R +VQ+ G GTV I ++ G AP + DE Sbjct: 55 FAVDAERASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVAAVLSTDEW--- 111 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+R ++ T++A RL ++ L ++ LLG+ ++K + Sbjct: 112 VLHAADQDLPCL-AEIGMRPTALYDTELAGRLANF--DRVNLAAMVQRLLGLQLTKGHGA 168 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +DWS L DE L YAA DV L LR L G+++ A +L Sbjct: 169 ADWSKRPLPDEWLNYAALDVEVLTDLREAIAAVLDEQGKAEWARQEFEYL 218 >gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana] Length = 642 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 6/148 (4%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVD 72 A + V+ AVD E + C++Q+S D VDI ++ P L + D Sbjct: 129 AALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKL--WDHIGPYLRELFKD 186 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K++K+ H DI L FG+ V +F T ASR+ + N L+ LK G+ + Sbjct: 187 PKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERN--SLEFLLKHYCGVAAN 244 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHL 160 K Q +DW L D +YA D +L Sbjct: 245 KEYQKADWRIRPLPDVMKRYAREDTHYL 272 >gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana] Length = 639 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 6/148 (4%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVD 72 A + V+ AVD E + C++Q+S D VDI ++ P L + D Sbjct: 129 AALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKL--WDHIGPYLRELFKD 186 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K++K+ H DI L FG+ V +F T ASR+ + N L+ LK G+ + Sbjct: 187 PKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERN--SLEFLLKHYCGVAAN 244 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHL 160 K Q +DW L D +YA D +L Sbjct: 245 KEYQKADWRIRPLPDVMKRYAREDTHYL 272 >gi|330955621|gb|EGH55881.1| ribonuclease D [Pseudomonas syringae Cit 7] Length = 235 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 20 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 75 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 76 GETRSDWLERPLSETQISYAAEDAVHLAEL 105 >gi|239917797|ref|YP_002957355.1| ribonuclease D [Micrococcus luteus NCTC 2665] gi|239839004|gb|ACS30801.1| ribonuclease D [Micrococcus luteus NCTC 2665] Length = 416 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 3/101 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R +F T++A+R+ + GL L+ELLG+ ++K Sbjct: 98 EWILHAASQDLPCLAEQ-GLRPDRLFDTELAARVA--GLPRVGLVAVLEELLGVTLAKEH 154 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++DWS L + L YAA DV L LR +L+ G+ Sbjct: 155 SAADWSVRPLPEAMLTYAALDVELLVPLREALIARLEADGK 195 >gi|218442029|ref|YP_002380358.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424] gi|218174757|gb|ACK73490.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424] Length = 648 Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 10/107 (9%) Query: 62 NAPNLVGMLVDE-----KREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTN 115 + P+L+ +++ + EK+FH FDI L V+ V CT KIA ++ + N Sbjct: 63 DKPDLIQDFINQIMKNPQIEKVFHNASFDIKYL--GGKEEVKNVTCTLKIAKKIGKHSLN 120 Query: 116 QHGLK-DNLKELL-GINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 LK L E L + I + QQ+SDW L++ QL YA DVV+L Sbjct: 121 VPNLKLKTLAEYLCNLPIVEDQQASDWGKRPLTELQLNYAKMDVVYL 167 >gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool] Length = 2215 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 83 RFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSD 139 R +I L GV V P+F T IA+++ G K ++ LG+ + K Q+SD Sbjct: 1688 RPEIGALQSDGGVYVSGPIFDTLIAAKVVEAGVMGTGFKLLQVVERFLGVLMDKRMQASD 1747 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 WS+ LS EQL YAA D + L+ + KL+ Sbjct: 1748 WSSPHLSQEQLLYAARDAAVMLPLQQRLQRKLE 1780 Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKI 78 ++ VD ET GL P R+ ++QL+ D + + A ++P+L +L + K+ Sbjct: 1527 SMGVDVETTGLDPYSARVRLLQLALPDFPTLLFDLFALPVSSPSLRAVRLLLASPRIRKV 1586 Query: 79 FHYGRFDIAVL 89 FH G+FD+ L Sbjct: 1587 FHNGKFDLCFL 1597 >gi|302187116|ref|ZP_07263789.1| ribonuclease D [Pseudomonas syringae pv. syringae 642] Length = 377 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164 >gi|330975291|gb|EGH75357.1| ribonuclease D [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 377 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164 >gi|315444833|ref|YP_004077712.1| ribonuclease D [Mycobacterium sp. Spyr1] gi|315263136|gb|ADT99877.1| ribonuclease D [Mycobacterium sp. Spyr1] Length = 424 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 11/170 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKN----APNLVGMLVDEKREK 77 AVD E +R +VQ+ G GTV I ++ G AP + DE Sbjct: 55 FAVDAERASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVAAVLSTDEW--- 111 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+R ++ T++A RL ++ L ++ LLG+ ++K + Sbjct: 112 VLHAADQDLPCL-AEIGMRPTALYDTELAGRLANF--DRVNLAAMVQRLLGLQLTKGHGA 168 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +DWS L DE L YAA DV L LR L G+++ A +L Sbjct: 169 ADWSKRPLPDEWLNYAALDVEVLTDLREAIAAILDEQGKAEWARQEFEYL 218 >gi|75906891|ref|YP_321187.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] gi|75700616|gb|ABA20292.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] Length = 302 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 15/147 (10%) Query: 25 VDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVG-----MLVDEKREK 77 +DTE R RL ++Q+ P D + D + + + P+LV ++V EK Sbjct: 25 IDTEVADYKSRNPRLSLIQVLDDPDDMSGDRVYLL-DVLDQPDLVANFVEKIMVSTNIEK 83 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLT-RTYTNQHGLKDNLKELL--GINISK 133 +FH FD+ +L + + + CT +IA ++ Q+ +L LL NI K Sbjct: 84 VFHNASFDVKLLG---NKQAKNITCTLEIAKKIPYHLLPVQNYQLQSLATLLCNFNNIDK 140 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160 +QSS+W LS+EQ++YA D ++L Sbjct: 141 QEQSSNWGRRPLSEEQIEYAYLDCIYL 167 >gi|253989912|ref|YP_003041268.1| ribonuclease D [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638250|emb|CAR66874.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781362|emb|CAQ84524.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica] Length = 375 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 7/176 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 A+ IA+DTE + +L ++QL G+ +D + I Q ++ + + Sbjct: 19 AKEYAKIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLNITNWQP----FRELITNPQ 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V F P+ T++ + + G + E + + + K+ Sbjct: 75 ILKFLHAGSEDLEVFLNAFQCLPEPMIDTQVLAAFI-GHPLSCGFAALVAEYIHVELDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + +DW A LS++Q +YAA+DV +L L + G + A C + R Sbjct: 134 ESRTDWLARPLSEKQCEYAAADVYYLLPLADILITATTQAGYMEAAIGECELISQR 189 >gi|159037106|ref|YP_001536359.1| 3'-5' exonuclease [Salinispora arenicola CNS-205] gi|157915941|gb|ABV97368.1| 3'-5' exonuclease [Salinispora arenicola CNS-205] Length = 451 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 3/101 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R R +F T++A+RL + GL + LLG ++ K Sbjct: 134 EWVLHAASQDLPCL-AELGLRPRRLFDTELAARLA--GFERVGLAALTEHLLGFSLEKHH 190 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++DWS+ L + L YAA DV L LR +L R G+ Sbjct: 191 SAADWSSRPLPESWLTYAALDVELLVELRDALEAELTRQGK 231 >gi|108799177|ref|YP_639374.1| 3'-5' exonuclease [Mycobacterium sp. MCS] gi|119868292|ref|YP_938244.1| 3'-5' exonuclease [Mycobacterium sp. KMS] gi|126434785|ref|YP_001070476.1| 3'-5' exonuclease [Mycobacterium sp. JLS] gi|108769596|gb|ABG08318.1| 3'-5' exonuclease [Mycobacterium sp. MCS] gi|119694381|gb|ABL91454.1| 3'-5' exonuclease [Mycobacterium sp. KMS] gi|126234585|gb|ABN97985.1| 3'-5' exonuclease [Mycobacterium sp. JLS] Length = 428 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 9/161 (5%) Query: 24 AVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDE---KREKIF 79 A+D E +R +VQ+ G GTV I + G+ P +V V + E + Sbjct: 61 AIDAERASGFRYSNRAYLVQIRREGAGTVLIDPVNHGED--PTMVMAPVADVLDTDEWVL 118 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+R ++ T++A RL + L + ELLG+ + K ++D Sbjct: 119 HAADQDLPCL-AELGMRPPKLYDTELAGRLA--GLARVNLATMVSELLGLQLMKGHGAAD 175 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 WS L D+ L YAA DV L LR L G++D A Sbjct: 176 WSKRPLPDDWLNYAALDVEVLLELRDAVAAVLDDQGKTDWA 216 >gi|67459201|ref|YP_246825.1| ribonuclease D [Rickettsia felis URRWXCal2] gi|67004734|gb|AAY61660.1| Ribonuclease D [Rickettsia felis URRWXCal2] Length = 281 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ + G +D A + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 79 APREDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 137 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ + L YA DV +L+ + + + R ++ + + L+D Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLD 186 >gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7] gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7] Length = 393 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 1/111 (0%) Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L D + K+ H D+ V G P+F T++A+ + G +KE+L Sbjct: 91 LLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLD 149 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 I++ K + SDW L++ Q++YAA DV HL + L +L R+ L Sbjct: 150 IDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWL 200 >gi|281413711|ref|ZP_06245453.1| ribonuclease D [Micrococcus luteus NCTC 2665] Length = 415 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 3/101 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R +F T++A+R+ + GL L+ELLG+ ++K Sbjct: 98 EWILHAASQDLPCLAEQ-GLRPDRLFDTELAARVA--GLPRVGLVAVLEELLGVTLAKEH 154 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++DWS L + L YAA DV L LR +L+ G+ Sbjct: 155 SAADWSVRPLPEAMLTYAALDVELLVPLREALIARLEADGK 195 >gi|237800267|ref|ZP_04588728.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023124|gb|EGI03181.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6] Length = 377 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164 >gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1] gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax] Length = 1860 Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 5/137 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA--PNLVGMLVDEKREKIFHY 81 +D ET GL +++ ++Q++ D V I + K + L +L +EK KI Sbjct: 1312 GLDIETTGLEVFDEKIRLIQIAVEDYPVIIYDMFNITKESILTGLREVLKNEKVVKIIQN 1371 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139 G+FD L + V +F T IAS+L N +G K N +++ L + + K QQ+S Sbjct: 1372 GKFDAKFLMHN-KFEVANIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQQNSV 1430 Query: 140 WSADDLSDEQLQYAASD 156 W+ L++ QL YAA D Sbjct: 1431 WNNSLLNNNQLFYAARD 1447 >gi|15604326|ref|NP_220842.1| ribonuclease D (RND) [Rickettsia prowazekii str. Madrid E] gi|3861018|emb|CAA14918.1| RIBONUCLEASE D (rnd) [Rickettsia prowazekii] gi|292572078|gb|ADE29993.1| Ribonuclease D [Rickettsia prowazekii Rp22] Length = 281 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 7/144 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-QKNAPNLVGMLVDEKREKIFH 80 ++++DTE +L I+Q+ +G II + N N +L+D KIFH Sbjct: 22 SLSIDTEFERRYTYYAQLSIIQVK-AEGYCGIIDTLSNLDLNIFN--KLLIDNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL-KELLGINISKAQQSSD 139 R D+ + + F +F +IA+ + Q DNL +L+GI I K Q S+ Sbjct: 79 APREDLEIFYNLFKTLPSNIFDIQIAASICGF--GQQLSYDNLCYKLIGITIDKTHQKSN 136 Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163 W ++++ L YA DV +L+ + Sbjct: 137 WLKRPITNDMLNYAILDVEYLYKI 160 >gi|315123522|ref|YP_004065528.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp. SM9913] gi|315017282|gb|ADT70619.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp. SM9913] Length = 376 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + ++Q+ G+ I +A + + + +L D K K+ H Sbjct: 25 LAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLA--ELSLFDFWQILKDPKVLKVLHSP 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI V G P+F T+ A +L N G +K LL I I K++ ++W Sbjct: 83 SEDIEVFQKYAGFVPYPLFDTQFALQLLGE-GNCMGFALMVKTLLNIEIDKSESRTNWLQ 141 Query: 143 DDLSDEQLQYAASDVVHL 160 L+ +QL+YAA+D HL Sbjct: 142 RPLTQKQLEYAAADTYHL 159 >gi|330900086|gb|EGH31505.1| ribonuclease D [Pseudomonas syringae pv. japonica str. M301072PT] Length = 377 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQITYAAEDAVHLAEL 164 >gi|34581576|ref|ZP_00143056.1| ribonuclease D [Rickettsia sibirica 246] gi|28262961|gb|EAA26465.1| ribonuclease D [Rickettsia sibirica 246] Length = 281 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ + G +D A + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 79 APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 137 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ + L YA DV +L+ + + + R ++ + + L+D Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKEINNIIVRNNLTNKYQTTLSALLD 186 >gi|66044808|ref|YP_234649.1| ribonuclease D [Pseudomonas syringae pv. syringae B728a] gi|63255515|gb|AAY36611.1| Ribonuclease D [Pseudomonas syringae pv. syringae B728a] Length = 377 Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQVSYAAEDAVHLAEL 164 >gi|296270237|ref|YP_003652869.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833] gi|296093024|gb|ADG88976.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833] Length = 403 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 8/165 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AR +A+D E R +VQL G GT I +A L +L D Sbjct: 34 ARGTGPVAMDAERASGYRYSGRAYLVQLRREGAGTALIDPVACPDLG--ELDRVLADA-- 89 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G R R +F T++A+RL + GL ++ +LG+ + K Sbjct: 90 EIVLHAATQDLPCL-AELGFRPRRLFDTELAARLL--GYERVGLATMVEVVLGLRLEKGH 146 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L ++ L+YAA DV L LR E+L G+ + A Sbjct: 147 SAADWSRRPLPEDWLRYAALDVEVLVELRDALYEQLVESGKLEWA 191 >gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni] gi|238658291|emb|CAZ29351.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni] Length = 830 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVD E C++Q+S G+ II A + + L + D K K+FH Sbjct: 236 IAVDLEHHSYRSFLGITCLIQMS-TLGSDYIIDALALRDHLSILNEVFTDPKIVKVFHGS 294 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ L FGV V +F T IA+RL + + L L+ +GI +K Q +DW Sbjct: 295 DSDLMWLQRDFGVYVVNLFDTGIAARLLQY--GRFSLSYLLQRFVGIYANKKYQLADWRI 352 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L +E ++YA SD +L + + +LQ Sbjct: 353 RPLPNELIEYARSDTHYLLHIASRMCRELQ 382 >gi|289178849|gb|ADC86095.1| Ribonuclease D [Bifidobacterium animalis subsp. lactis BB-12] Length = 440 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H R D+ F G++ R +F T+IA++L + + GL LGI ++K Sbjct: 103 EWILHDSRQDLPG-FAQIGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEH 159 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++DWS L + YAA DV L L T +L+R G+ + A ++ + Sbjct: 160 SAADWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDYAL 212 >gi|330974089|gb|EGH74155.1| ribonuclease D [Pseudomonas syringae pv. aceris str. M302273PT] Length = 377 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133 K+ H D+ VL G P+F T++A+ Y N G ++E+L I++ K Sbjct: 79 KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + SDW LS+ Q+ YAA D VHL L Sbjct: 135 GETRSDWLQRPLSETQVSYAAEDAVHLAEL 164 >gi|332992448|gb|AEF02503.1| ribonuclease D [Alteromonas sp. SN2] Length = 385 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 3/160 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + L ++QL G V I +A + + ++ + + Sbjct: 19 AQQQKAVALDTEFVRTRTLSPHLGLIQLYDGHQLVLIDPLAID--DLSPFIALMENTRVV 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ F PVF ++ A+ + + G ++ L +++ K + Sbjct: 77 KVLHSCSEDLETFLTAFNTVPTPVFDSQFAASILGLGASL-GYAKLVELLCDVSLDKGES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +DW A L + QL YAA+DV++L EK+ G+ Sbjct: 136 RTDWIARPLREAQLSYAANDVLYLLPCYEHLVEKINEAGK 175 >gi|323359928|ref|YP_004226324.1| ribonuclease D [Microbacterium testaceum StLB037] gi|323276299|dbj|BAJ76444.1| ribonuclease D [Microbacterium testaceum StLB037] Length = 398 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 3/115 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E +FH D+ L G+ +F T++ +RL + GL +++ LGI ++KA Sbjct: 77 EWVFHAASQDLPSL-RERGLEPPRIFDTELGARLL--GHERVGLGAVVEQTLGITLAKAH 133 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++DWS L L+YAA DV HL +R +L+ +++ A +++R Sbjct: 134 SAADWSTRPLPASWLEYAALDVEHLIDVRDVLVAELEEQQKTEFARQEFQAVLER 188 >gi|219683452|ref|YP_002469835.1| ribonuclease D [Bifidobacterium animalis subsp. lactis AD011] gi|219621102|gb|ACL29259.1| putative ribonuclease D [Bifidobacterium animalis subsp. lactis AD011] Length = 430 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H R D+ F G++ R +F T+IA++L + + GL LGI ++K Sbjct: 93 EWILHDSRQDLPG-FAQIGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEH 149 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++DWS L + YAA DV L L T +L+R G+ + A ++ + Sbjct: 150 SAADWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDYAL 202 >gi|183601395|ref|ZP_02962765.1| hypothetical protein BIFLAC_02027 [Bifidobacterium animalis subsp. lactis HN019] gi|241191105|ref|YP_002968499.1| hypothetical protein Balac_1081 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196511|ref|YP_002970066.1| hypothetical protein Balat_1081 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219001|gb|EDT89642.1| hypothetical protein BIFLAC_02027 [Bifidobacterium animalis subsp. lactis HN019] gi|240249497|gb|ACS46437.1| hypothetical protein Balac_1081 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251065|gb|ACS48004.1| hypothetical protein Balat_1081 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794094|gb|ADG33629.1| hypothetical protein BalV_1041 [Bifidobacterium animalis subsp. lactis V9] Length = 433 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H R D+ F G++ R +F T+IA++L + + GL LGI ++K Sbjct: 96 EWILHDSRQDLPG-FAQIGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEH 152 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++DWS L + YAA DV L L T +L+R G+ + A ++ + Sbjct: 153 SAADWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDYAL 205 >gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] Length = 682 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 29/165 (17%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT-----------VDIIRIAAGQKNAPNLVGMLV 71 + +D ET GL P +DR ++ LS T ++ +R K P LVG Sbjct: 150 LGLDLETTGLDPHQDRPRLLSLSTERDTYLVDLFALPHALEALRPLFEAKTGPVLVG--- 206 Query: 72 DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 H +FD+A L R ++CT +A ++ + L D L Sbjct: 207 --------HNLKFDLAFLLKAGLWPEGRRLWCTGLAHQVIHARSRMPALAD-----LVPG 253 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + K Q+SDWS +S+ QL YAA D L L Q E+ +RLG Sbjct: 254 LDKRLQTSDWSGP-ISEAQLAYAARDTQVLLPLYHQQQEESRRLG 297 >gi|332670632|ref|YP_004453640.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484] gi|332339670|gb|AEE46253.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484] Length = 424 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 20/185 (10%) Query: 7 HEGDIPAECAARYVDA-------IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58 H D P E A R V A +AVD E R +VQL G GT I +A Sbjct: 37 HVVDTPEELA-RVVAAFGAGTGPVAVDAERASGYRYGQRTYLVQLRREGAGTALIDPVAL 95 Query: 59 GQKNAPN--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 +A + LVG+ E + H D+ L G+R +F T++ +RL + Sbjct: 96 PDLSALSEALVGV------EWVLHAASQDLPGLTEQ-GMRPTRIFDTELGARLL--GMER 146 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 GL + + LG+ ++K + DWS L E L+YAA DV L LR E+L G+ Sbjct: 147 VGLAAVVADALGLGLAKEHSAVDWSTRPLPQEWLRYAALDVEVLVPLREVLAERLAVAGK 206 Query: 177 SDLAT 181 ++ A Sbjct: 207 AEWAA 211 >gi|312882473|ref|ZP_07742214.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122] gi|309369873|gb|EFP97384.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122] Length = 346 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 11/155 (7%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 +DTE + +L ++QL G + +I +P + +L D K+ H Sbjct: 2 LDTEFVRTRTYHPQLGLIQLYDGQ-NLSLIDPKVIDDMSP-FIDLLKDPSVLKVLHACGE 59 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINISKAQQSSDW 140 D+ V +FG P+ T++ + HGL L L + + K++ +DW Sbjct: 60 DLEVFHNSFGCLPHPMVDTQLMAAFL-----GHGLSTGFAALVEQYLEVELDKSESRTDW 114 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 A L+ +QL YAA+DV +L L EK++++G Sbjct: 115 LARPLTQKQLDYAAADVFYLKPLFSLLLEKIEQVG 149 >gi|157964642|ref|YP_001499466.1| ribonuclease D [Rickettsia massiliae MTU5] gi|157844418|gb|ABV84919.1| Ribonuclease D [Rickettsia massiliae MTU5] Length = 284 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ + G +D A + +L D KIFH Sbjct: 26 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 81 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 82 APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 140 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ + L YA DV +L+ + + + R ++ + + L+D Sbjct: 141 LKRPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLD 189 >gi|312959586|ref|ZP_07774103.1| ribonuclease D [Pseudomonas fluorescens WH6] gi|311286303|gb|EFQ64867.1| ribonuclease D [Pseudomonas fluorescens WH6] Length = 377 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 9/152 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + ++Q+ GDG + N L +L + K+ H Sbjct: 27 VALDTEFMRVDTFYPIAGLIQI--GDGVRAYLIDPLTIDNWQPLAALLENPSVIKVVHAC 84 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139 D+ VL G P+F T++A+ Y N G ++ +L I++ K + SD Sbjct: 85 SEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQAVLDIDLPKGETRSD 140 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 W LS+ Q+ YAA D VHL + + KL Sbjct: 141 WLQRPLSETQISYAAEDAVHLAEVYTRLRPKL 172 >gi|148653524|ref|YP_001280617.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1] gi|148572608|gb|ABQ94667.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1] Length = 431 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 16/172 (9%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL----VGMLVDEKRE 76 D +A+DTE + L +VQ++ G I +AP L ++++E Sbjct: 67 DRVALDTEFIKRNTYFPILALVQINTGKAIYLI--------DAPKLDLTEFWVVLEEMPL 118 Query: 77 KIFHYGRFDIAVLFY-TFGVRVRPVFCTKIA-SRLTRTYTNQHGLKDNLKELLGINISKA 134 I+H D+ + + + + VF T+IA S LT Q G + L + L +++ KA Sbjct: 119 MIWHACGEDLGIFYLLSESPALTNVFDTQIALSYLTGQL--QMGYQQALSQELDVHVEKA 176 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 + SDW A LS EQ YA DV +L L ++L + G +D C Sbjct: 177 ESQSDWLARPLSHEQENYAIDDVRYLLNLYDILQQQLSKQGLTDKVVEDCQL 228 >gi|307154950|ref|YP_003890334.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] gi|306985178|gb|ADN17059.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] Length = 305 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 20/161 (12%) Query: 25 VDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKI 78 +DTE ++ RL ++Q+ DG+ I +++ + + ++ +E+ K+ Sbjct: 25 LDTEVADFKSQKPRLSLIQMLAYPQDKDGSRTFIIDVLNKRDEVDYFIEKIMSNEQINKV 84 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCT-KIASR-----LTRTYTNQHGLKDNLKELLGINIS 132 FH + D+ L G + + + CT K+A L + L ++L E N+S Sbjct: 85 FHNAQHDLKFLG---GKKAQNITCTMKLAQSIPYHILPVSSLTLKTLTEHLTEF--KNVS 139 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVV---HLHALRLQFTEK 170 K +Q SDW LSD+QL YA D + H+H L+ +K Sbjct: 140 KEEQGSDWGQRPLSDQQLHYAKMDPIYLAHIHQKLLELIKK 180 >gi|269794953|ref|YP_003314408.1| ribonuclease D [Sanguibacter keddieii DSM 10542] gi|269097138|gb|ACZ21574.1| ribonuclease D [Sanguibacter keddieii DSM 10542] Length = 437 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 VF T++A+R+ + GL + E+LG+ ++K + DWS L D L YAA DV Sbjct: 136 VFDTELAARIL--GMERVGLAAVVAEVLGLGLAKEHSAVDWSTRPLPDAWLLYAALDVEV 193 Query: 160 LHALRLQFTEKLQRLGRSDLA 180 L LR + E+L+ G+++ A Sbjct: 194 LVELRDRMAERLEAAGKTEWA 214 >gi|332290211|ref|YP_004421063.1| ribonuclease D [Gallibacterium anatis UMN179] gi|330433107|gb|AEC18166.1| ribonuclease D [Gallibacterium anatis UMN179] Length = 377 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 7/146 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 AR+ +A+DTE + +L ++QL G +D + I Q + +L D Sbjct: 20 ARHYSVVALDTEFERVRSYYAKLGLIQLYFGADVALIDPLTITDWQP----FIALLADAN 75 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 KI H DI + F P+ T+I + + G + L + + K Sbjct: 76 VLKILHASGEDIEIFHQQFQQIPTPMLDTQIMANFL-GFPQSAGFALLAQHYLQVELDKK 134 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHL 160 +DW LS+ QL YAA+DV +L Sbjct: 135 ASRTDWLKRPLSERQLNYAAADVYYL 160 >gi|317508452|ref|ZP_07966122.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974] gi|316253299|gb|EFV12699.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974] Length = 470 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R +F T++ R+ + GL ++ LLG+ ++K Sbjct: 126 EWVLHAADQDLPCL-AELGLRPAKLFDTELGGRIA--GFERVGLAALVETLLGVGLAKGH 182 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++DWS L E L YAA DV L +R E L G+++ A ++ R Sbjct: 183 GAADWSQRPLPPEWLNYAALDVELLLPMREALLEALAEQGKTEWALEEFEYVRMR 237 >gi|83645396|ref|YP_433831.1| ribonuclease D [Hahella chejuensis KCTC 2396] gi|83633439|gb|ABC29406.1| ribonuclease D [Hahella chejuensis KCTC 2396] Length = 398 Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T++A+ L N+ GL+ +++ LGI + K SDW+ L+D+Q+QYA DVV L Sbjct: 117 TQVANALLDGELNE-GLQSLVRQNLGIELEKHATRSDWTQRPLTDKQIQYAQEDVVVLWP 175 Query: 163 LRLQFTEKLQRLGRSDLA 180 L + E L+ G+ ++A Sbjct: 176 LYQKLAEALRLSGKYEIA 193 >gi|15892619|ref|NP_360333.1| ribonuclease D [Rickettsia conorii str. Malish 7] gi|15619787|gb|AAL03234.1| ribonuclease D [Rickettsia conorii str. Malish 7] Length = 281 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 7/143 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ + G +D A + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 79 APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 137 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 ++ + L YA DV +L+ + Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKI 160 >gi|120403469|ref|YP_953298.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1] gi|119956287|gb|ABM13292.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1] Length = 426 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R ++ T++A RL Y + L ++ LLG+ ++K Sbjct: 112 EWVLHAADQDLPCLA-EIGMRPPSLYDTELAGRLA-NY-ERVNLAAMVQRLLGLQLTKGH 168 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++DWS L + L YAA DV L LR +E LQ G+ A +L Sbjct: 169 GAADWSKRPLPQDWLNYAALDVEVLVDLRHAISEVLQEQGKEGWAAEEFEYL 220 >gi|157825886|ref|YP_001493606.1| ribonuclease D [Rickettsia akari str. Hartford] gi|157799844|gb|ABV75098.1| Ribonuclease D [Rickettsia akari str. Hartford] Length = 281 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ + G +D A + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNVFNKLLEDNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 79 APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDICYKLIGITIDKTHQKSNW 137 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ + L YA DV +L+ + + + R ++ + + L+D Sbjct: 138 LKRPITSDMLNYAMLDVKYLYKIYQELNNIIIRNNLTNKYKTTLSSLLD 186 >gi|320534424|ref|ZP_08034906.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 171 str. F0337] gi|320133371|gb|EFW25837.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 171 str. F0337] Length = 424 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 5/106 (4%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKA 134 E I H DI L G+R +F T++A+RL QH GL ++E LG+ ++K Sbjct: 104 EWILHAADQDIPCL-TALGLRADSLFDTELAARL---LGRQHVGLGAVIEETLGLRLAKD 159 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L L YAA DV L LR +L+ G+ A Sbjct: 160 HAAADWSTRPLPASWLTYAALDVELLIDLRNALATELKAAGKDQWA 205 >gi|91792982|ref|YP_562633.1| ribonuclease D [Shewanella denitrificans OS217] gi|91714984|gb|ABE54910.1| ribonuclease D [Shewanella denitrificans OS217] Length = 371 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 7/158 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + RL ++Q G T+ +I A + +P +L K+ H Sbjct: 26 LVLDTEFVRTRTYYARLGLIQAFDGK-TLALIDPVAIEDLSP-FWQLLTAPHITKLVHSC 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISKAQQSSDW 140 D+ V + + P+F ++IA+ L HGL ++E L + I K + +DW Sbjct: 84 SEDLEVFAHYGHCQPAPLFDSQIAASLAGL---GHGLGYAKLVQECLSVEIDKGESRTDW 140 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L+D QLQYAA+DV +L+ L EKL GR + Sbjct: 141 MKRPLTDAQLQYAANDVFYLYKLYPLLLEKLNANGRVE 178 >gi|77362412|ref|YP_341986.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas haloplanktis TAC125] gi|76877323|emb|CAI89540.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas haloplanktis TAC125] Length = 376 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + ++Q+ G+ I +A + + + +L D K+FH Sbjct: 25 LAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLA--ELSLFDFWQILKDPAVLKVFHSP 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI V G P+F T+ A ++ N G +K LL I I K++ ++W Sbjct: 83 SEDIEVFQKYAGFVPTPLFDTQFALQILGE-GNCMGFALMVKTLLDIEIDKSESRTNWLQ 141 Query: 143 DDLSDEQLQYAASDVVHL 160 L+++QL+YAA+D HL Sbjct: 142 RPLTNKQLEYAAADAYHL 159 >gi|218680574|ref|ZP_03528471.1| ribonuclease D [Rhizobium etli CIAT 894] Length = 262 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%) Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++I K+ + +DWS LSD+QL+YA +DV HL + L +L R GR+ + + L Sbjct: 5 NVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEMDIL 64 Query: 188 MDRAELDL 195 R DL Sbjct: 65 EARETYDL 72 >gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40] gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40] Length = 703 Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 47/222 (21%) Query: 19 YVDAIAVDTETL------GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 Y + +D ET L P ++ +VQ++ + + R +KN + +L D Sbjct: 8 YKKIVGIDIETWDGKKGGSLDPYSGKIALVQIAYDRNNIVLYR--PWEKNFEEALKVLSD 65 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL----------------------- 109 + K+ H +FD+ FY + P+F T IAS++ Sbjct: 66 KDVLKVGHNLKFDLK-FFYMNNIYPEPIFDTMIASQMIYAGLDEPDEISEVLEALKDDLT 124 Query: 110 --------------TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155 T+ H L+ LK L I + K Q+S+W + LS+ Q +YA + Sbjct: 125 TEEVAIFDVFGKKRTKATKFSHSLQAVLKRELNIFLPKDVQNSNWGGE-LSEAQKEYAIN 183 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 DV +L L ++ +K++ L ++ FL L+L G Sbjct: 184 DVKYLKDLSIELWKKIKALNIENVFMLEMKFLPVLVMLELTG 225 >gi|319441607|ref|ZP_07990763.1| hypothetical protein CvarD4_07546 [Corynebacterium variabile DSM 44702] Length = 459 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 66/146 (45%), Gaps = 13/146 (8%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRIA-AGQKNAPNLVG 68 AE A +AVDTE DR +VQL G GT VD + AG+ AP L Sbjct: 35 AEVLATGSGPVAVDTERASGFRFDDRAWLVQLRRAGAGTHLVDPAVVPDAGELLAPVLND 94 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + + H D+ L T G + T+IA RL Q GL L+ELLG Sbjct: 95 L------PWVLHAAHTDLPAL-TTLGWHTPLLHDTQIAGRLL--GFGQIGLAGMLEELLG 145 Query: 129 INISKAQQSSDWSADDLSDEQLQYAA 154 + ++K + DWSA L + L YAA Sbjct: 146 VTVAKDKGREDWSARPLPADMLTYAA 171 >gi|269956679|ref|YP_003326468.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894] gi|269305360|gb|ACZ30910.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894] Length = 420 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R VF T++A+RL + GL + + LG+ ++K Sbjct: 109 EWILHAASQDLPGL-AEHGLRPASVFDTELAARLL--GLERVGLAAVVADTLGLGLAKEH 165 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + DWS L + L+YAA DV L +R E+L G+S+ A Sbjct: 166 SAVDWSTRPLPVDWLRYAALDVEVLGEVRDVLAERLADAGKSEWAA 211 >gi|262166840|ref|ZP_06034571.1| ribonuclease D [Vibrio cholerae RC27] gi|262024728|gb|EEY43402.1| ribonuclease D [Vibrio cholerae RC27] Length = 284 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 7/143 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ + G +D A + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAENYCGIID----ALSNVDLNIFNKLLADNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F VF +IA+ + + Q D +L GI I K Q S+W Sbjct: 79 APREDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLFGIAIDKTHQKSNW 137 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 ++ + L YA DV +L+ + Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKI 160 >gi|117928598|ref|YP_873149.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B] gi|117649061|gb|ABK53163.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B] Length = 416 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 71/157 (45%), Gaps = 12/157 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +AVD E R +VQL PG GT +D + A + L E I Sbjct: 44 VAVDAERASAYRYGHRAYLVQLRRPGAGTFLIDPLPFANLRPVHEALSTA------EWIV 97 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+R +F T++A+RL Y GL ++ELLG ++K D Sbjct: 98 HAAAQDLPCL-AELGLRPARLFDTELAARLA-GYPRV-GLAAMVEELLGFRLNKDHARVD 154 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 WS L + L+YAA DV L LR +LQR G+ Sbjct: 155 WSRRPLPESWLRYAALDVEVLVELREILHTELQRQGK 191 >gi|91205505|ref|YP_537860.1| ribonuclease D [Rickettsia bellii RML369-C] gi|157827220|ref|YP_001496284.1| ribonuclease D [Rickettsia bellii OSU 85-389] gi|91069049|gb|ABE04771.1| Ribonuclease D [Rickettsia bellii RML369-C] gi|157802524|gb|ABV79247.1| Ribonuclease D [Rickettsia bellii OSU 85-389] Length = 286 Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 3/167 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ ++ I I N N +L+D KIFH Sbjct: 23 LSIDTEFERRYTYYAKLSIIQVKAEGCSIIIDAINNLDLNVFN--KLLIDNNIIKIFHAP 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D + + F +F ++A+ + +Q D +L INI K Q S+W Sbjct: 81 REDFEIFYNLFKTLPSNIFDVQVAANVC-GLGSQLSYDDICYKLFKINIDKTHQKSNWLK 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++++ L YA DV +L + Q + + ++ S FL + Sbjct: 140 RPITEDMLNYAFLDVEYLDKIYKQLNKIILDNNLTNQYQSMLQFLFN 186 >gi|157803677|ref|YP_001492226.1| ribonuclease D [Rickettsia canadensis str. McKiel] gi|157784940|gb|ABV73441.1| Ribonuclease D [Rickettsia canadensis str. McKiel] Length = 284 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 7/143 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ + G +D A + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAENYCGIID----ALSNVDLNIFNKLLADNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F VF +IA+ + + Q D +L GI I K Q S+W Sbjct: 79 APREDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLFGIAIDKTHQKSNW 137 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 ++ + L YA DV +L+ + Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKI 160 >gi|329945641|ref|ZP_08293374.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 170 str. F0386] gi|328528644|gb|EGF55609.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 170 str. F0386] Length = 372 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKA 134 E I H DI L G+R +F T++A+RL QH GL ++E LG+ ++K Sbjct: 52 EWILHAADQDIPCL-TALGLRSASLFDTELAARL---LGRQHVGLGAVIEETLGLRLAKD 107 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++DWS L L YAA DV L LR +L+ G+S A Sbjct: 108 HAAADWSTRPLPASWLIYAALDVELLIDLRDALAAELETDGKSQWAA 154 >gi|254786713|ref|YP_003074142.1| ribonuclease D [Teredinibacter turnerae T7901] gi|237686111|gb|ACR13375.1| ribonuclease D [Teredinibacter turnerae T7901] Length = 393 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 1/112 (0%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V G+ + + T+IAS L Y G + +LG + K + Sbjct: 84 KVLHSCSEDLEVFHRFLGIVPKHMLDTQIASALC-GYGFSVGFGKLVHAVLGEELPKEET 142 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 SDW LS Q+ YAA DV +L+ L KL+ LGR C ++ Sbjct: 143 RSDWLHRPLSSAQIDYAAIDVEYLYKLASILVLKLKNLGRLTWVAEDCEAML 194 >gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H] gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H] Length = 1861 Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA--PNLVGMLVDEKREKIFHY 81 +D ET GL +++ ++Q++ + V I + K + L +L +EK KI Sbjct: 1313 GLDIETTGLEVFDEKIRLIQIAVENYPVIIYDMFNITKESILTGLREILKNEKVVKIIQN 1372 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139 G+FD L + +V +F T IAS+L N +G K N +++ L + + K QQ+S Sbjct: 1373 GKFDAKFLMHN-NFQVDNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQQNSV 1431 Query: 140 WSADDLSDEQLQYAASD 156 W+ L++ QL YAA D Sbjct: 1432 WNNSLLNNNQLFYAARD 1448 >gi|223939512|ref|ZP_03631388.1| 3'-5' exonuclease [bacterium Ellin514] gi|223891784|gb|EEF58269.1| 3'-5' exonuclease [bacterium Ellin514] Length = 372 Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 12/169 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGML-VDEKREKIF 79 +A+DTE L +++C++Q++ GD +D + + NL +L E I Sbjct: 37 VALDTEADSLHAYPEKVCLLQITTPLGDELIDPL-------SGINLDPLLDTFGGHELIM 89 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H +D+ +L + +F T +ASRL Q GL + LG+ + K Q +D Sbjct: 90 HGSDYDLRLLRKHHAFVPKAIFDTMLASRLL--GHTQFGLVHLVAHYLGVTLEKGSQKAD 147 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 W+ L+ YA +D +L L + L+ GR C L+ Sbjct: 148 WAKRPLTPRMEAYARNDTHYLKHLADRLKSDLEVKGRLGWHQELCARLI 196 >gi|51473650|ref|YP_067407.1| ribonuclease D [Rickettsia typhi str. Wilmington] gi|51459962|gb|AAU03925.1| ribonuclease D [Rickettsia typhi str. Wilmington] Length = 281 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 7/144 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-QKNAPNLVGMLVDEKREKIFH 80 ++++DTE +L I+Q+ +G II + N N +L+D KIFH Sbjct: 22 SLSIDTEFERRYTYYAQLSIIQVK-AEGYCGIIDTLSNLDLNIFN--KLLIDNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL-KELLGINISKAQQSSD 139 R D+ + + F +F +IA+ + Q DNL +L+GI I K Q S+ Sbjct: 79 APREDLEIFYNLFKTLPSNIFDIQIAASICGF--GQQLSYDNLCYKLIGITIDKTHQKSN 136 Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163 W ++ + L YA DV +L+ + Sbjct: 137 WLKRPITSDMLNYAILDVEYLYKI 160 >gi|296129572|ref|YP_003636822.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109] gi|296021387|gb|ADG74623.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109] Length = 417 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R VF T++A+RL + GL + + LG+ ++K Sbjct: 105 EWVLHAASQDLPGLAEQ-GMRPSRVFDTELAARLL--GMERVGLAAVVADTLGLGLAKEH 161 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L E L+YAA DV L +R E+L G+++ A Sbjct: 162 SAVDWSTRPLPTEWLRYAALDVEVLVEVRQVLAERLAVSGKAEWA 206 >gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans] Length = 741 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 8/140 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +AVD E + C++QLS D VD++R+ + + L + +D K+FH Sbjct: 241 VAVDLEHHDFRSFQGITCLMQLSTRSEDYIVDVLRL---RSHMHRLNRVFLDTNILKVFH 297 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 + D+ L FG+ V +F T IA +T H L + G+ + K Q++DW Sbjct: 298 GAKEDVRWLQKDFGLYVANMFDTGIA---LQTLHMPHSLAFAVDHFCGVRLDKKYQTADW 354 Query: 141 SADDLSDEQLQYAASDVVHL 160 + E + YA D +L Sbjct: 355 RIRPVPSEMIHYARQDTHYL 374 >gi|157828635|ref|YP_001494877.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933351|ref|YP_001650140.1| ribonuclease D [Rickettsia rickettsii str. Iowa] gi|157801116|gb|ABV76369.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908438|gb|ABY72734.1| ribonuclease D [Rickettsia rickettsii str. Iowa] Length = 281 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 7/169 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ + G +D A + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S W Sbjct: 79 APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSHW 137 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ + L YA DV +L+ + + + R ++ + + L+D Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKELNNIIVRNNLTNKYQTTLSALLD 186 >gi|323700422|ref|ZP_08112334.1| 3'-5' exonuclease [Desulfovibrio sp. ND132] gi|323460354|gb|EGB16219.1| 3'-5' exonuclease [Desulfovibrio desulfuricans ND132] Length = 204 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 38/74 (51%) Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155 R +P ++S + HGL++ LLG ISK+ Q S+W+ D LS +Q+ YAA+ Sbjct: 127 RFKPSGFVDLSSITAKYNLQTHGLRNMAANLLGFRISKSAQCSNWAKDKLSRQQVLYAAT 186 Query: 156 DVVHLHALRLQFTE 169 D L L E Sbjct: 187 DAWISRELYLALEE 200 >gi|284990407|ref|YP_003408961.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160] gi|284063652|gb|ADB74590.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160] Length = 418 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 18/174 (10%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLV-- 67 AE A +AVD E R +VQL G G +D I + P+L Sbjct: 47 AEALAAGSGPVAVDAERASGYRYGQRAYLVQLRRVGTGTGLIDPIPL-------PDLSVV 99 Query: 68 -GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +VD E + H D+ L V R +F T++A+RL + GL ++ L Sbjct: 100 QSAIVDA--EWVLHAASQDLPSLAEVGLVPAR-LFDTELAARLA--GLPRVGLGAVVESL 154 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 LG + K ++DWS L +E L YAA DV L LR L+ G+++ A Sbjct: 155 LGYRLEKGHSAADWSTRPLPEEWLVYAALDVEVLVDLRDALAAVLEEQGKTEWA 208 >gi|145594075|ref|YP_001158372.1| 3'-5' exonuclease [Salinispora tropica CNB-440] gi|145303412|gb|ABP53994.1| 3'-5' exonuclease [Salinispora tropica CNB-440] Length = 451 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 3/101 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R R +F T++A+RL + GL + LLG ++ K Sbjct: 134 EWVLHAASQDLYCL-AELGLRPRRLFDTELAARLA--GFERVGLAALTENLLGFSLEKHH 190 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++DWS+ L + L YAA DV L LR +L R G+ Sbjct: 191 SAADWSSRPLPESWLTYAALDVELLVELRDALDAELTRQGK 231 >gi|289671331|ref|ZP_06492406.1| ribonuclease D [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 293 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ GV RP+F T+IA+ L K ++E+ G ++K + Sbjct: 5 KVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQEVTGTLLTKGET 63 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175 SDW LS QL+YAA DV +L A+ + T +L RLG Sbjct: 64 RSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQDRLG 105 >gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148] gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148] Length = 373 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 6/167 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRIAAGQKNAPNLVGMLV 71 AA DA+ VDTE + ++ +VQL GT +I + AP L + Sbjct: 18 AAIGCDAVMVDTEFMRRNTFYPQVALVQLCFCGGGATGTAWMIDPLKIEDPAP-LANLFK 76 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D KI H D+ V GV P+F T+ A+ L G + + EL ++ Sbjct: 77 DAGVIKILHSASEDLEVFQRWLGVLPLPLFDTQKAAALV-GLDFGLGYRSMVLELCNEDL 135 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K + SDW L++ Q YAA DV+ L E+ + R D Sbjct: 136 PKGETRSDWLQRPLTESQCHYAAQDVIWLLDAYQIIAERCHSMQRYD 182 >gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis] Length = 827 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 62/143 (43%), Gaps = 11/143 (7%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRIAAGQK--NAPNLVGMLVDEKREK 77 A AVD E C++Q+S D VD I N P VD K Sbjct: 274 AFAVDLEHNSYRSYYGLTCLLQISTRDTDYIVDPFPIWHEMYILNEP-----FVDPNIVK 328 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H DI L FG+ V +F T A + Q LK +KEL+G+N+ K+ Q+ Sbjct: 329 VMHGSSQDIQWLQRDFGIYVVNLFDTYHAMEVLEM--PQRSLKFLVKELVGVNLDKSYQT 386 Query: 138 SDWSADDLSDEQLQYAASDVVHL 160 +DW L + L YA SD +L Sbjct: 387 ADWRIRPLGSKMLAYARSDSHYL 409 >gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis] Length = 669 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 18/145 (12%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E + C++QLS D VD + + A N L + + K K+FH Sbjct: 139 IAVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTLALRA---NLNILNQVFTNPKIVKVFH 195 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLKELLGINISKAQ 135 DI L FGV V +F T A+R L+R Y +H K + K Sbjct: 196 GADQDIKWLQRDFGVYVVNLFDTGQAARVLELGLSREYLLKHYCK--------VESDKKY 247 Query: 136 QSSDWSADDLSDEQLQYAASDVVHL 160 Q +DW LS + L+YA D +L Sbjct: 248 QKADWRERPLSKDMLKYAQEDTHYL 272 >gi|319426180|gb|ADV54254.1| ribonuclease D [Shewanella putrefaciens 200] Length = 369 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 3/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + +L ++Q G I +A + L +L + K+ H Sbjct: 26 LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAKLWALLANPNIIKLVHSC 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V + + P+F ++IA+ L + G ++ LG I K + +DW Sbjct: 84 SEDLEVFAHYGQCQPVPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 142 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L++ QL YAA+DV++LH L Q KL GR Sbjct: 143 RPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGR 176 >gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp. lyrata] gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp. lyrata] Length = 681 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 V+ AVD E + C++Q+S D VD ++ P+L + D K++K Sbjct: 227 VEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKL--WDHIGPHLRELFKDPKKKK 284 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H DI L FG+ V +F T ASR+ + + L+ LK G+ K Q+ Sbjct: 285 VMHGADHDIIWLQRDFGIYVCNLFDTGQASRVLK--LERKSLEFLLKHYCGVAADKQYQN 342 Query: 138 SDWSADDLSDEQLQYAASDVVHL 160 +DW L D +YA D +L Sbjct: 343 ADWRIRPLPDVMTRYAREDTHYL 365 >gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa] gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa] Length = 855 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 10/147 (6%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLVGMLVDE 73 R V+ AVD E + C++Q+S D VD + RI G P L + D Sbjct: 249 RGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVG----PYLREVFKDP 304 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + K+ H DI L FG+ + +F T ASR+ + N L+ L G+ K Sbjct: 305 AKRKVMHGADRDIVWLQRDFGIYICNLFDTGQASRVLKLERN--SLEYLLHHFCGVTAKK 362 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160 Q+++W L DE ++YA D +L Sbjct: 363 EYQNAEWRLRPLPDEMIRYAREDTHYL 389 >gi|309811737|ref|ZP_07705515.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185] gi|308434349|gb|EFP58203.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185] Length = 459 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R R +F T++ SRL + GL + +G+ ++K Sbjct: 129 EWVLHAATQDLPCL-KALGLRPRKLFDTELGSRLA--GLPRVGLAAVTEHFVGVTLAKEH 185 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + DWS L + L YAA DV L +R L+ G+++ A L+D Sbjct: 186 SAVDWSTRPLPHDWLVYAALDVERLVEVRDALAADLEAQGKAEWARQEFEALLD 239 >gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] Length = 341 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 40 CIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 C++Q+S D VD +++ +L + +D ++K+ H DI L FG+ + Sbjct: 31 CLMQISTRTEDFIVDTLKLR--DHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIYI 88 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 +F T ASR+ + ++ L+ L+ G+ +K Q++DW A L D ++Y D Sbjct: 89 CNMFDTGQASRVLK--MERYSLQHLLQHFCGVTANKEYQNADWRARPLPDVMIKYGREDT 146 Query: 158 VHL 160 +L Sbjct: 147 HYL 149 >gi|119470938|ref|ZP_01613522.1| putative RNase D, processing tRNA precursors [Alteromonadales bacterium TW-7] gi|119445960|gb|EAW27240.1| putative RNase D, processing tRNA precursors [Alteromonadales bacterium TW-7] Length = 376 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 10/171 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + ++Q+ G+ I +A + + + +L D K+ H Sbjct: 25 LAIDTEFMRRRTLYPEVALIQVFDGEHLALIDPLA--ELSLFDFWQVLKDPAVLKVLHSP 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI V G P+F T+ A +L N G +K LLGI I K++ ++W Sbjct: 83 SEDIEVFQKYAGFVPAPLFDTQFALQLLGE-GNCMGFALMVKTLLGIEIDKSESRTNWLQ 141 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 L+ +QL YAA+D HL F + R+ +DL ++D +EL Sbjct: 142 RPLTTKQLDYAAADTFHLLPC---FELIIDRINNADL----FEIVLDESEL 185 >gi|170726464|ref|YP_001760490.1| ribonuclease D [Shewanella woodyi ATCC 51908] gi|169811811|gb|ACA86395.1| ribonuclease D [Shewanella woodyi ATCC 51908] Length = 369 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 5/166 (3%) Query: 13 AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A+ ++Y ++ + +DTE + RL ++Q G I +A + +L Sbjct: 14 AKLVSQYRESQLLVLDTEFVRTRTFYARLGLIQAYDGKTLALIDPVAVS--DLSGFWSLL 71 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + I H D+ V + +F ++IA+ L + + G +++ L I Sbjct: 72 TEPSITTILHSCSEDLEVFARNGQCQPVKLFDSQIAAALC-GFGHGLGYAKLVEQTLNIP 130 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + K + +DW LS+ QL YAA+DV +L+ L Q EKL+ R Sbjct: 131 LDKGESRTDWMKRPLSEAQLNYAANDVYYLYQLYPQLVEKLEEQNR 176 >gi|186685790|ref|YP_001868986.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] gi|186468242|gb|ACC84043.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] Length = 306 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 19/154 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVG-----MLVD 72 + + +DTE R RL ++Q+ +P D + D + + + PN++ ++++ Sbjct: 20 IKTLWIDTEVADYKSRNPRLSLIQVLDNPQDMSGDRVYLL-DVLDQPNIIAEFIEKIMIN 78 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-----KIASRLTRTYTNQHGLKDNLKELL 127 EK+FH +D+ L + + + CT KI + Q LK L Sbjct: 79 SAIEKVFHNASYDLKFLG---NKKAKNITCTLEMVKKIPYHILPLPNYQ--LKTIATALC 133 Query: 128 GIN-ISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 N I K +Q+SDW L++EQ++YA D ++L Sbjct: 134 SFNNIDKQEQTSDWGKRPLTEEQIEYAYLDCIYL 167 >gi|152965548|ref|YP_001361332.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216] gi|151360065|gb|ABS03068.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216] Length = 427 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R +F T++ SR+ + GL ++ELLG+ ++K Sbjct: 102 EWVLHAANQDLPCL-AEVGMRPTRLFDTELGSRIA--GLPRVGLGAVVEELLGLRLAKEH 158 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L YAA DV L +R E+L G+ + A Sbjct: 159 SAVDWSTRPLPEPWLTYAALDVEVLVQVRDALAERLAAQGKLEWA 203 >gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group] Length = 599 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 10/163 (6%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLVGMLVDEKR 75 V+ AVD E + C++Q+S D VD + RI G L D + Sbjct: 163 VNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIGLY----LKEHFKDPTK 218 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H DI L F + V +F T ASR+ + N L+ L+ G+ +K Sbjct: 219 RKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQMERN--SLEHLLRHFCGVTANKEY 276 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 Q++DW + LSDE ++YA D +L + +LQ+ SD Sbjct: 277 QNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQKESTSD 319 >gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 592 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 10/163 (6%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDII--RIAAGQKNAPNLVGMLVDEKR 75 V+ AVD E + C++Q+S D +D + RI G L + D + Sbjct: 52 VNEFAVDLEHNQYRSFQGLTCLMQISTRSEDFIIDTLKLRIYIGSY----LKEIFKDPTK 107 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H DI L F V V +F T ASR+ + N L+ L G+ +K Sbjct: 108 RKVMHGADRDIMWLQRDFRVYVCNLFDTGQASRVLQMERN--SLEHLLHHFCGVTANKIY 165 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 Q++DW + LSDE ++YA D +L + +LQR S+ Sbjct: 166 QNADWRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQRESTSE 208 >gi|126174091|ref|YP_001050240.1| ribonuclease D [Shewanella baltica OS155] gi|125997296|gb|ABN61371.1| ribonuclease D [Shewanella baltica OS155] Length = 369 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + +L ++Q G I +A + +L D K+ H Sbjct: 26 LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAQFWALLSDPNIVKLVHSC 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V + + P+F ++IA+ L + G ++ LG I K + +DW Sbjct: 84 SEDLEVFAHYGKCQPTPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 142 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L++ QL YAA+DV++L+ L Q KL GR Sbjct: 143 RPLTEAQLSYAANDVLYLYQLYPQLEAKLSAQGR 176 >gi|157962268|ref|YP_001502302.1| ribonuclease D [Shewanella pealeana ATCC 700345] gi|157847268|gb|ABV87767.1| ribonuclease D [Shewanella pealeana ATCC 700345] Length = 369 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 9/170 (5%) Query: 13 AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A +Y DA + +DTE + RL ++Q G I +A N +L Sbjct: 14 AALVEQYQDADLLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPLAVS--NLELFWQLL 71 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLG 128 E K+ H D+ V + +F ++IA+ L HGL +++ L Sbjct: 72 SKESSVKLLHSCSEDLEVFARYGNCQPTNLFDSQIAAGLAGM---GHGLGYAKLVEQTLE 128 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +++ K + +DW L++ QL YAA+DV +L+ L Q + L+ GR D Sbjct: 129 VSLDKGESRTDWLKRPLTEAQLNYAANDVYYLYKLYPQLVKLLEEQGRLD 178 >gi|331696705|ref|YP_004332944.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190] gi|326951394|gb|AEA25091.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190] Length = 394 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 13/163 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKN-APNLVGMLVDEKREKI 78 +AVD E R +VQL G +D I + + +P L G E + Sbjct: 34 VAVDAERASGFRYSQRAYLVQLRRAGAGSALIDPIPLGSDLSALSPALTGP------EWV 87 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L G+ +F T++A RL + GL +++LLG+ + K ++ Sbjct: 88 LHAASQDLPCL-AEVGLAPTSLFDTELAGRLA--GLPRVGLGPMVEQLLGLALEKGHGAA 144 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 DWS L ++ L YAA DV L LR L G+S+ A Sbjct: 145 DWSRRPLPEDWLVYAALDVEVLIELRDLLAGMLAEQGKSEFAA 187 >gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 906 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 10/125 (8%) Query: 40 CIVQLSP--GDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 C++Q+S D VD +++ +N NL + D ++K+ H DI L FG+ Sbjct: 305 CLMQISTRTEDFIVDTLKL----RNCLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGI 360 Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155 V +F T ASR+ + +++ L+ L+ G+ +K QS+DW L DE +YA Sbjct: 361 YVCNLFDTGQASRILQM--DRNSLEHLLQYFCGVTANKEYQSADWRLRPLPDEMTKYARE 418 Query: 156 DVVHL 160 D +L Sbjct: 419 DTHYL 423 >gi|225439201|ref|XP_002269553.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 912 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 12/153 (7%) Query: 14 ECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLV 67 E AA+ V+ AVD E + C++Q+S D VD + RI G P L Sbjct: 238 ELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHVG----PYLR 293 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + D ++K+ H DI L FG+ + +F T ASR+ + N L+ L Sbjct: 294 EVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQASRVLKLERN--SLEHLLHHYC 351 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 G+ +K Q+ DW L E L+YA D +L Sbjct: 352 GVTANKEYQNGDWRLRPLPHEMLRYAREDTHYL 384 >gi|312196135|ref|YP_004016196.1| 3'-5' exonuclease [Frankia sp. EuI1c] gi|311227471|gb|ADP80326.1| 3'-5' exonuclease [Frankia sp. EuI1c] Length = 440 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R +F T++A RL + GL ++ +LG + K Sbjct: 96 EWVLHAASQDLPCL-AELGLRPTTLFDTELAGRLL--GYERVGLGMMVERVLGFGLEKGH 152 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L + L+YAA DV L LR +L G+ D A Sbjct: 153 SAADWSTRPLPEPWLRYAALDVELLVELRDALAVELAETGKLDFA 197 >gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group] gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica Group] gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group] gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group] gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group] Length = 600 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLVGMLVDE 73 + V+ AVD E + C++Q+S D VD + RI G L D Sbjct: 162 KSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIGLY----LKEHFKDP 217 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + K+ H DI L F + V +F T ASR+ + N L+ L+ G+ +K Sbjct: 218 TKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQMERN--SLEHLLRHFCGVTANK 275 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 Q++DW + LSDE ++YA D +L + +LQ+ SD Sbjct: 276 EYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQKESTSD 320 >gi|308177768|ref|YP_003917174.1| ribonuclease D [Arthrobacter arilaitensis Re117] gi|307745231|emb|CBT76203.1| putative ribonuclease D [Arthrobacter arilaitensis Re117] Length = 416 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 3/103 (2%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ L + G+ +F T++A RL + L + ELLG+ ++K + Sbjct: 109 ILHAATQDLPCL-HELGMSPTALFDTELAGRLA--GFPRVSLGTMVGELLGLQLAKEHSA 165 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DWS L + L YAA DV L LR T L+ G+ + A Sbjct: 166 VDWSTRPLPESWLNYAALDVEVLEELRQAITATLEEQGKLEFA 208 >gi|125558189|gb|EAZ03725.1| hypothetical protein OsI_25856 [Oryza sativa Indica Group] Length = 501 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 35/53 (66%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +ELLG+ +SK Q SDWS LS+ Q+QYAASD +L + F +K++ G+ Sbjct: 188 EELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQKIRTEGK 240 >gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera] Length = 901 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 12/153 (7%) Query: 14 ECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLV 67 E AA+ V+ AVD E + C++Q+S D VD + RI G P L Sbjct: 227 ELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHVG----PYLR 282 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + D ++K+ H DI L FG+ + +F T ASR+ + N L+ L Sbjct: 283 EVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQASRVLKLERN--SLEHLLHHYC 340 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 G+ +K Q+ DW L E L+YA D +L Sbjct: 341 GVTANKEYQNGDWRLRPLPHEMLRYAREDTHYL 373 >gi|153000417|ref|YP_001366098.1| ribonuclease D [Shewanella baltica OS185] gi|160875014|ref|YP_001554330.1| ribonuclease D [Shewanella baltica OS195] gi|217973594|ref|YP_002358345.1| ribonuclease D [Shewanella baltica OS223] gi|151365035|gb|ABS08035.1| ribonuclease D [Shewanella baltica OS185] gi|160860536|gb|ABX49070.1| ribonuclease D [Shewanella baltica OS195] gi|217498729|gb|ACK46922.1| ribonuclease D [Shewanella baltica OS223] gi|315267246|gb|ADT94099.1| ribonuclease D [Shewanella baltica OS678] Length = 369 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + +L ++Q G I +A + +L D K+ H Sbjct: 26 LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAQFWALLSDPNIIKLVHSC 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V + + P+F ++IA+ L + G ++ LG I K + +DW Sbjct: 84 SEDLEVFAHYGKCQPTPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 142 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L++ QL YAA+DV++L+ L Q KL GR Sbjct: 143 RPLTEAQLSYAANDVLYLYQLYPQLEAKLSAQGR 176 >gi|262279001|ref|ZP_06056786.1| ribonuclease D [Acinetobacter calcoaceticus RUH2202] gi|262259352|gb|EEY78085.1| ribonuclease D [Acinetobacter calcoaceticus RUH2202] Length = 374 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 72 QQNIFHACGEDIDLIYHYADQEDLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLDI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV+++ L E+L++ G D C+ L Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYIMKLAHHIQEQLKQKGLYDYVLEDCSSL 184 >gi|229589039|ref|YP_002871158.1| putative ribonuclease [Pseudomonas fluorescens SBW25] gi|229360905|emb|CAY47765.1| putative ribonuclease [Pseudomonas fluorescens SBW25] Length = 377 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 9/152 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + + ++Q+ GDG + N L +L + K+ H Sbjct: 27 VALDTEFMRVDTFYPIAGLIQI--GDGVRAYLIDPLTIDNWQPLAALLENPAVIKVVHAC 84 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139 D+ VL G P+F T++A+ Y N G ++ +L I + K + SD Sbjct: 85 SEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQAVLDIELPKGETRSD 140 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 W LS+ Q+ YAA D VHL + + +L Sbjct: 141 WLQRPLSETQISYAAEDAVHLAEVYTRLRPRL 172 >gi|254514489|ref|ZP_05126550.1| ribonuclease D [gamma proteobacterium NOR5-3] gi|219676732|gb|EED33097.1| ribonuclease D [gamma proteobacterium NOR5-3] Length = 372 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 7/140 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVDTE + + ++QL D +D +++ + L ++ D K+ H Sbjct: 25 IAVDTEFMRRNTYYPHIALLQLCSDDHAWLIDPLKVT----DLDGLRALMTDTGCWKVLH 80 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ V + GV P+ T+ A+ L G + ++ LLG+ + K + SDW Sbjct: 81 SCSEDLEVFRHWLGVVPSPLIDTQRATALLGKGFG-LGYRALIELLLGVELDKGETRSDW 139 Query: 141 SADDLSDEQLQYAASDVVHL 160 LSD Q YAA DV+ L Sbjct: 140 LKRPLSDSQCHYAALDVLKL 159 >gi|158316934|ref|YP_001509442.1| 3'-5' exonuclease [Frankia sp. EAN1pec] gi|158112339|gb|ABW14536.1| 3'-5' exonuclease [Frankia sp. EAN1pec] Length = 499 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R + +F T++A RL + GL ++ +LG + K Sbjct: 135 EWVLHAASQDLPCL-AELGLRPKTLFDTELAGRLL--GYERVGLGAMVERVLGFGLEKGH 191 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++DWS L + L+YAA DV L LR Q +L Sbjct: 192 SAADWSNRPLPEPWLRYAALDVELLVELRDQLESEL 227 >gi|118467912|ref|YP_887109.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155] gi|118169199|gb|ABK70095.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155] Length = 415 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R ++ T++A RL + L ++ LLG+ + K Sbjct: 105 EWVLHAADQDLPCL-AEIGLRPGKLYDTELAGRLA--GFERVNLAAMVQRLLGLQLMKGH 161 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L DE L YAA DV L LR L+ G+++ A Sbjct: 162 GAADWSKRPLPDEWLNYAALDVEVLLELRHAIAAVLEEQGKTEWA 206 >gi|115471903|ref|NP_001059550.1| Os07g0452400 [Oryza sativa Japonica Group] gi|113611086|dbj|BAF21464.1| Os07g0452400 [Oryza sativa Japonica Group] Length = 501 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 35/53 (66%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +ELLG+ +SK Q SDWS LS+ Q+QYAASD +L + F +K++ G+ Sbjct: 188 EELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQKIRTEGK 240 >gi|299770307|ref|YP_003732333.1| ribonuclease D [Acinetobacter sp. DR1] gi|298700395|gb|ADI90960.1| ribonuclease D [Acinetobacter sp. DR1] Length = 374 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 72 QQNIFHACGEDIDLIYHYADQEDLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLDI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV+++ L E+L++ G D C+ L Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYIMKLAHHIQEQLKQKGLYDYVLEDCSSL 184 >gi|226366248|ref|YP_002784031.1| ribonuclease [Rhodococcus opacus B4] gi|226244738|dbj|BAH55086.1| putative ribonuclease [Rhodococcus opacus B4] Length = 428 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 69/162 (42%), Gaps = 11/162 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTV--DIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +AVD E R +VQL G GTV D I AA ++ L E I Sbjct: 55 LAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAPLAEVINPL-----EWIL 109 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+ +F T++A RL + GL ++ LG + K ++D Sbjct: 110 HSADQDLPGL-AEIGLAPATLFDTELAGRLA--GFERVGLAAIVERTLGFELRKGHGAAD 166 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 WS L D L YAA DV L LR +L G+SD A Sbjct: 167 WSKRPLPDTWLNYAALDVEVLVELRNAMAAELGEQGKSDWAA 208 >gi|326773241|ref|ZP_08232524.1| ribonuclease D [Actinomyces viscosus C505] gi|326636471|gb|EGE37374.1| ribonuclease D [Actinomyces viscosus C505] Length = 424 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 5/106 (4%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKA 134 E I H DI L G++ +F T++A+RL QH GL ++E LG+ ++K Sbjct: 104 EWILHAADQDIPCL-TARGLKAASLFDTELAARL---LGRQHVGLGAVIEETLGLRLAKD 159 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L L YAA DV L LR +L+ G+ A Sbjct: 160 HAAADWSTRPLPTSWLTYAALDVELLIDLREALATELEAAGKDQWA 205 >gi|34394896|dbj|BAC84412.1| unknown protein [Oryza sativa Japonica Group] Length = 501 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 35/53 (66%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +ELLG+ +SK Q SDWS LS+ Q+QYAASD +L + F +K++ G+ Sbjct: 188 EELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQKIRTEGK 240 >gi|317125038|ref|YP_004099150.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043] gi|315589126|gb|ADU48423.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043] Length = 418 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 3/113 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ V G++ R +F T++ RL + GL ++ LG+ ++K Sbjct: 101 EWILHAATHDL-VCLAEVGLQPRVLFDTELGGRLA--GLPRVGLGAMVEHYLGLQLAKEH 157 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 + DWS L + L+YAA DV L LR L+R G++ A L+ Sbjct: 158 SAVDWSIRPLPEPWLRYAALDVEVLVDLRHAVHADLERQGKAGWAAEEFQSLL 210 >gi|15609818|ref|NP_217197.1| hypothetical protein Rv2681 [Mycobacterium tuberculosis H37Rv] gi|15842219|ref|NP_337256.1| ribonuclease D, putative [Mycobacterium tuberculosis CDC1551] gi|148662522|ref|YP_001284045.1| putative ribonuclease D [Mycobacterium tuberculosis H37Ra] gi|148823871|ref|YP_001288625.1| hypothetical protein TBFG_12696 [Mycobacterium tuberculosis F11] gi|253798237|ref|YP_003031238.1| hypothetical protein TBMG_01292 [Mycobacterium tuberculosis KZN 1435] gi|254232787|ref|ZP_04926114.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis C] gi|254365342|ref|ZP_04981387.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis str. Haarlem] gi|289444223|ref|ZP_06433967.1| conserved alanine rich protein [Mycobacterium tuberculosis T46] gi|289448336|ref|ZP_06438080.1| conserved alanine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289553533|ref|ZP_06442743.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 605] gi|289575379|ref|ZP_06455606.1| conserved alanine rich protein [Mycobacterium tuberculosis K85] gi|289746482|ref|ZP_06505860.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289751333|ref|ZP_06510711.1| conserved alanine rich protein [Mycobacterium tuberculosis T92] gi|289754783|ref|ZP_06514161.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308369826|ref|ZP_07419200.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu002] gi|308372367|ref|ZP_07428406.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu004] gi|308373474|ref|ZP_07432469.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu005] gi|308377095|ref|ZP_07441113.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu008] gi|308405939|ref|ZP_07494488.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu012] gi|2181972|emb|CAB09492.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882508|gb|AAK47070.1| ribonuclease D, putative [Mycobacterium tuberculosis CDC1551] gi|124601846|gb|EAY60856.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis C] gi|134150855|gb|EBA42900.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis str. Haarlem] gi|148506674|gb|ABQ74483.1| putative ribonuclease D [Mycobacterium tuberculosis H37Ra] gi|148722398|gb|ABR07023.1| conserved alanine rich protein [Mycobacterium tuberculosis F11] gi|253319740|gb|ACT24343.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 1435] gi|289417142|gb|EFD14382.1| conserved alanine rich protein [Mycobacterium tuberculosis T46] gi|289421294|gb|EFD18495.1| conserved alanine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289438165|gb|EFD20658.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 605] gi|289539810|gb|EFD44388.1| conserved alanine rich protein [Mycobacterium tuberculosis K85] gi|289687010|gb|EFD54498.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289691920|gb|EFD59349.1| conserved alanine rich protein [Mycobacterium tuberculosis T92] gi|289695370|gb|EFD62799.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308326264|gb|EFP15115.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu002] gi|308333435|gb|EFP22286.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu004] gi|308337502|gb|EFP26353.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu005] gi|308348930|gb|EFP37781.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu008] gi|308365086|gb|EFP53937.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu012] gi|323718676|gb|EGB27838.1| alanine rich protein [Mycobacterium tuberculosis CDC1551A] gi|326904295|gb|EGE51228.1| conserved alanine rich protein [Mycobacterium tuberculosis W-148] gi|328458009|gb|AEB03432.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 4207] Length = 438 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R ++ T++A RL ++ L ++ LLG+ ++K Sbjct: 109 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 165 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++DWS L L YAA DV L LR + L G++D A Sbjct: 166 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 211 >gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] Length = 586 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 5/99 (5%) Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKAQQS 137 H +FD+ L F V + VF T IAS++ N +H L L + K Q+ Sbjct: 85 HNLKFDLKFLATNFDVYPKVVFDTFIASKILAKGDNSQKHSLSAVAVRLTDEEVDKTYQT 144 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 S W ++L+ EQ++Y+A D+ LR F E++ RL Sbjct: 145 SPWWVENLTKEQIEYSAKDI---EVLRSIFREQVVRLNE 180 >gi|215428107|ref|ZP_03426026.1| hypothetical protein MtubT9_17623 [Mycobacterium tuberculosis T92] gi|297635289|ref|ZP_06953069.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN 4207] Length = 416 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R ++ T++A RL ++ L ++ LLG+ ++K Sbjct: 87 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 143 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++DWS L L YAA DV L LR + L G++D A Sbjct: 144 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 189 >gi|304411369|ref|ZP_07392983.1| ribonuclease D [Shewanella baltica OS183] gi|307305309|ref|ZP_07585057.1| ribonuclease D [Shewanella baltica BA175] gi|304350224|gb|EFM14628.1| ribonuclease D [Shewanella baltica OS183] gi|306911612|gb|EFN42037.1| ribonuclease D [Shewanella baltica BA175] Length = 369 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + +L ++Q G I +A + +L D K+ H Sbjct: 26 LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAQFWALLSDPNIIKLVHSC 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V + + P+F ++IA+ L + G ++ LG I K + +DW Sbjct: 84 SEDLEVFAHYGKCQPTPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 142 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L++ QL YAA+DV++L+ L Q KL GR Sbjct: 143 RPLTEAQLSYAANDVLYLYQLYPQLEAKLSVQGR 176 >gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 176 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 6/140 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 AVD E + C++Q+S D VD++ + + ++A L D + K+ H Sbjct: 29 FAVDLEHHSYRSFKGFTCLMQISTRERDFVVDVLALRSHVRDA--LGKAFADADKLKVMH 86 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L FG+ V +F T A+R+ + GL L GI +K Q +DW Sbjct: 87 GADNDVQWLQKDFGMFVSCLFDTGQAARVLELPSK--GLAYLLHHYCGIKANKRFQLADW 144 Query: 141 SADDLSDEQLQYAASDVVHL 160 L+ E ++YA D HL Sbjct: 145 RLRPLTKEMVEYARGDTHHL 164 >gi|308232210|ref|ZP_07664029.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu001] gi|308371097|ref|ZP_07667091.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu003] gi|308374662|ref|ZP_07667838.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu006] gi|308375511|ref|ZP_07668042.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu007] gi|308378065|ref|ZP_07668659.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu009] gi|308379281|ref|ZP_07668932.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu010] gi|308380440|ref|ZP_07669197.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu011] gi|308214618|gb|EFO74017.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu001] gi|308329844|gb|EFP18695.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu003] gi|308341104|gb|EFP29955.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu006] gi|308346112|gb|EFP34963.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu007] gi|308353627|gb|EFP42478.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu009] gi|308357474|gb|EFP46325.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu010] gi|308361428|gb|EFP50279.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu011] Length = 468 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R ++ T++A RL ++ L ++ LLG+ ++K Sbjct: 139 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 195 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++DWS L L YAA DV L LR + L G++D A Sbjct: 196 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 241 >gi|167970096|ref|ZP_02552373.1| conserved alanine rich protein [Mycobacterium tuberculosis H37Ra] gi|215404645|ref|ZP_03416826.1| hypothetical protein Mtub0_13363 [Mycobacterium tuberculosis 02_1987] gi|215431621|ref|ZP_03429540.1| hypothetical protein MtubE_13303 [Mycobacterium tuberculosis EAS054] gi|254551737|ref|ZP_05142184.1| hypothetical protein Mtube_14982 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187698|ref|ZP_05765172.1| hypothetical protein MtubCP_16944 [Mycobacterium tuberculosis CPHL_A] gi|260201808|ref|ZP_05769299.1| hypothetical protein MtubT4_17360 [Mycobacterium tuberculosis T46] gi|260205991|ref|ZP_05773482.1| hypothetical protein MtubK8_17005 [Mycobacterium tuberculosis K85] gi|294994226|ref|ZP_06799917.1| 3'-5' exonuclease [Mycobacterium tuberculosis 210] gi|297732285|ref|ZP_06961403.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN R506] gi|313659618|ref|ZP_07816498.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN V2475] Length = 404 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R ++ T++A RL ++ L ++ LLG+ ++K Sbjct: 75 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 131 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++DWS L L YAA DV L LR + L G++D A Sbjct: 132 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 177 >gi|332708965|ref|ZP_08428935.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya majuscula 3L] gi|332352154|gb|EGJ31724.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya majuscula 3L] Length = 890 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 15/114 (13%) Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGV-RVRPVFCT-KIASRLTRT------YTNQHGLK 120 ++V+ EK+FH FD L Y G + V CT +IA +LT + H LK Sbjct: 74 IMVNPNIEKVFHNASFD---LRYLGGKEQANNVTCTYQIARKLTNKKLSNPLQVSNHKLK 130 Query: 121 DNLKELLGI-NISKAQQSSDWSADDLSDEQLQYAASDVV---HLHALRLQFTEK 170 EL N+ +QSSDW L+ +QL YA D V H+H L+ ++K Sbjct: 131 TLALELCNFANVDTEEQSSDWGKRPLTQKQLNYAKMDTVYLAHVHRRLLEISDK 184 >gi|271967979|ref|YP_003342175.1| ribonuclease D-like protein [Streptosporangium roseum DSM 43021] gi|270511154|gb|ACZ89432.1| Ribonuclease D-like protein [Streptosporangium roseum DSM 43021] Length = 408 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 3/101 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G R +F T++A RL + GL ++ +LG+ + K Sbjct: 91 EVVLHAASQDLPCL-AELGFHPRELFDTELAGRLL--GYERVGLGMMVENVLGLKLEKGH 147 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++DWS L ++ L+YAA DV L LR E+L+ G+ Sbjct: 148 SAADWSTRPLPEDWLRYAALDVEVLVELRDVLHEELKTSGK 188 >gi|149919604|ref|ZP_01908083.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1] gi|149819547|gb|EDM78975.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1] Length = 386 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 16/174 (9%) Query: 16 AARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAPNLVGMLVD 72 A R DA +A+D+E+ + R+R+C++QL+ + +A AG P + Sbjct: 20 AQRMRDAAWVALDSESNSMFAYRERVCLLQLNVAGALFLVDTLALAGDSGEPRAEALAAL 79 Query: 73 EKREK------IFHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKE 125 + H G +D+A L FG+ + +F T+ AS L + T + + + E Sbjct: 80 AEPLASPSLRLWIHGGEYDVACLKRDFGIALGGLFDTQQAASFLGWSRTGYAAVVEAVCE 139 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + KA + DW + + L+YA DVVHL + + R+G +DL Sbjct: 140 Q---KLPKAHKQHDWGRRPIDAKALRYALDDVVHLPRVGRELE---ARIGAADL 187 >gi|289570857|ref|ZP_06451084.1| conserved alanine rich protein [Mycobacterium tuberculosis T17] gi|289544611|gb|EFD48259.1| conserved alanine rich protein [Mycobacterium tuberculosis T17] Length = 443 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R ++ T++A RL ++ L ++ LLG+ ++K Sbjct: 139 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 195 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++DWS L L YAA DV L LR + L G++D A Sbjct: 196 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 241 >gi|269468831|gb|EEZ80435.1| ribonuclease D [uncultured SUP05 cluster bacterium] Length = 345 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + LC+VQ++ T D I + +P L L + I H Sbjct: 21 LAIDTEFKRVNTYYPVLCLVQIATKKNT-DCIDVLTLDDLSP-LFDKLYQDDCLWIVHSA 78 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI L Y + +F T+IA+ L Y Q + + L +++ KA DW+ Sbjct: 79 RQDIEALHYLSKQLPKQLFDTQIAASLV-NYPAQISYQALTESLQNVHLEKAYTRLDWTI 137 Query: 143 DDLSDEQLQYAASDVVHL 160 L DE ++YA DV +L Sbjct: 138 RPLPDEAIEYALDDVRYL 155 >gi|145299067|ref|YP_001141908.1| ribonuclease D [Aeromonas salmonicida subsp. salmonicida A449] gi|142851839|gb|ABO90160.1| ribonuclease D [Aeromonas salmonicida subsp. salmonicida A449] Length = 379 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 KE LG+++ K Q +DW A L++ QL+YAA+DV++L L + KL G+ Sbjct: 130 KEFLGVDLVKDQARTDWLARPLTERQLEYAAADVLYLMPLYEKVMAKLHESGKFAWFEQE 189 Query: 184 CN 185 C Sbjct: 190 CQ 191 >gi|293608164|ref|ZP_06690467.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828737|gb|EFF87099.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 374 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 72 QQNIFHACGEDIDLIYHYADQEDLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLDI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV++L L E+L++ G + C+ L Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMKLAHHIQEQLKQKGLYNYVLEDCSSL 184 >gi|38233981|ref|NP_939748.1| putative ribonuclease [Corynebacterium diphtheriae NCTC 13129] gi|38200243|emb|CAE49927.1| Putative ribonuclease [Corynebacterium diphtheriae] Length = 407 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 6/167 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 A+DTE G DR ++Q+ G GTV +I A ++ +++G +++ + I H Sbjct: 37 AIDTERAGAYRYDDRAYLLQIRREGSGTV-LIDPEANRRLVTSVLGKVINNQ-PWIIHAA 94 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ L G +F T++A RL + L L+E L + + KA + DWS Sbjct: 95 ATDLPCL-SELGFYPSTIFDTELAGRLAGL--PRVNLASMLEERLEVTLKKAHGAEDWSR 151 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 L L YAA DV L L L+ G+ + C L++ Sbjct: 152 RPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGKLEWHKQECAHLIN 198 >gi|31793853|ref|NP_856346.1| hypothetical protein Mb2700 [Mycobacterium bovis AF2122/97] gi|121638556|ref|YP_978780.1| hypothetical protein BCG_2694 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991048|ref|YP_002645737.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31619447|emb|CAD94885.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium bovis AF2122/97] gi|121494204|emb|CAL72682.1| Conserved hypothetical alanine rich protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774163|dbj|BAH26969.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 438 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R ++ T++A RL ++ L ++ LLG+ ++K Sbjct: 109 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 165 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++DWS L L YAA DV L LR + L G++D A Sbjct: 166 GAADWSKRPLPSAWLNYAALDVELLIELRAVISRVLAEQGKTDWAA 211 >gi|219558691|ref|ZP_03537767.1| hypothetical protein MtubT1_15842 [Mycobacterium tuberculosis T17] Length = 379 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R ++ T++A RL ++ L ++ LLG+ ++K Sbjct: 75 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 131 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++DWS L L YAA DV L LR + L G++D A Sbjct: 132 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 177 >gi|325122106|gb|ADY81629.1| ribonuclease D, processes tRNA [Acinetobacter calcoaceticus PHEA-2] Length = 374 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 72 QQNIFHACGEDIDLIYHYADQEDLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLDI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV++L L E+L++ G + C+ L Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMKLAHHIQEQLKQKGLYNYVLEDCSSL 184 >gi|146292862|ref|YP_001183286.1| ribonuclease D [Shewanella putrefaciens CN-32] gi|145564552|gb|ABP75487.1| ribonuclease D [Shewanella putrefaciens CN-32] Length = 367 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + +L ++Q G I +A + +L + K+ H Sbjct: 24 LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAKFWALLANPNIIKLVHSC 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V + + P+F ++IA+ L + G ++ LG I K + +DW Sbjct: 82 SEDLEVFAHYGQCQPVPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L++ QL YAA+DV++LH L Q KL GR Sbjct: 141 RPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGR 174 >gi|120599067|ref|YP_963641.1| ribonuclease D [Shewanella sp. W3-18-1] gi|120559160|gb|ABM25087.1| ribonuclease D [Shewanella sp. W3-18-1] Length = 367 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + +L ++Q G I +A + +L + K+ H Sbjct: 24 LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAKFWALLANPNIIKLVHSC 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V + + P+F ++IA+ L + G ++ LG I K + +DW Sbjct: 82 SEDLEVFAHYGQCQPVPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L++ QL YAA+DV++LH L Q KL GR Sbjct: 141 RPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGR 174 >gi|218184595|gb|EEC67022.1| hypothetical protein OsI_33743 [Oryza sativa Indica Group] Length = 854 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D ++K+ H DI L FG+ V +F T ASR+ + +++ L+ L G Sbjct: 281 IFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQM--DRNSLEHLLHHFCG 338 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 + +K QS+DW L DE ++YA D +L Sbjct: 339 VTANKEYQSADWRLRPLPDEMIKYAREDTHYL 370 >gi|198423738|ref|XP_002125788.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 [Ciona intestinalis] Length = 572 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 3/144 (2%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKRE 76 +Y I D E + + ++QL+ G +IR++ + P L +L D Sbjct: 79 QYAKVIGFDCEWTSKSGKPQPVALLQLATVSGVCLLIRLSHYRGPLPVRLQSILSDASYI 138 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ- 135 K+ D L + +G+ V + + T+ N GLK + LG+ ++K + Sbjct: 139 KVGVGPMEDANKLLHDYGIVVSGCVDLRSLAVRTKETKNSLGLKGLAQSYLGVTMNKQKH 198 Query: 136 -QSSDWSADDLSDEQLQYAASDVV 158 Q S W A LS EQ+ YAA+D + Sbjct: 199 IQCSAWDAPSLSQEQIDYAANDAL 222 >gi|111023812|ref|YP_706784.1| ribonuclease III [Rhodococcus jostii RHA1] gi|110823342|gb|ABG98626.1| probable ribonuclease III [Rhodococcus jostii RHA1] Length = 429 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 11/162 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTV--DIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +AVD E R +VQL G GTV D I AA ++ L E I Sbjct: 55 LAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAPLAEVINPL-----EWIL 109 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+ +F T++A RL + GL ++ LG+ + K ++D Sbjct: 110 HSADQDLPGL-AEIGLAPATLFDTELAGRLA--GFERVGLAAIVERTLGLELRKGHGAAD 166 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 WS L D L YAA DV L LR +L G+S+ A Sbjct: 167 WSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAA 208 >gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica Group] Length = 902 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D ++K+ H DI L FG+ V +F T ASR+ + +++ L+ L G Sbjct: 329 IFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQM--DRNSLEHLLHHFCG 386 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 + +K QS+DW L DE ++YA D +L Sbjct: 387 VTANKEYQSADWRLRPLPDEMIKYAREDTHYL 418 >gi|297571370|ref|YP_003697144.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595] gi|296931717|gb|ADH92525.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595] Length = 398 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 6/170 (3%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 AVDTE + +R +VQ+ + ++ + +L ++ DE I H Sbjct: 39 PFAVDTERAMGIRYSNRAYLVQIKRAGSGIVLLDPIGIEDRLGDLATIMHDEW---ILHA 95 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L G+ VF T++A L Y ++ L+ + E LG ++K +DWS Sbjct: 96 ADQDLPCL-RELGLEPSNVFDTELAG-LILGY-DRVSLQSMIAEELGFVLAKEHSDADWS 152 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 A L E YAA DV L LR T KL+ GR + S C + R Sbjct: 153 ARPLGPELRAYAALDVDLLIELRESLTGKLKEAGRYEWFLSECEEVRRRP 202 >gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group] Length = 877 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D ++K+ H DI L FG+ V +F T ASR+ + +++ L+ L G Sbjct: 304 IFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQM--DRNSLEHLLHHFCG 361 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 + +K QS+DW L DE ++YA D +L Sbjct: 362 VTANKEYQSADWRLRPLPDEMIKYAREDTHYL 393 >gi|332533384|ref|ZP_08409249.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505] gi|332037093|gb|EGI73550.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505] Length = 304 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L D K+ H DI V G P+F T+ A +L N G +KEL G Sbjct: 38 ILKDPSVLKVLHSPSEDIEVFQKYAGFVPSPLFDTQFALQLLGE-GNCMGFALMVKELQG 96 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 I I K++ ++W L+ +QL YAA+D +L Sbjct: 97 IEIDKSESRTNWLQRPLTKKQLDYAAADTFYL 128 >gi|167392672|ref|XP_001740248.1| exosome complex exonuclease RRP6 [Entamoeba dispar SAW760] gi|165895708|gb|EDR23337.1| exosome complex exonuclease RRP6, putative [Entamoeba dispar SAW760] Length = 517 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 13/150 (8%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDII--RIAAGQKNAPNLVGMLV 71 + +V+ AVD E +C++Q+S D +D I R + N P Sbjct: 202 SLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYIIDTITLRDSITLLNDP-----FT 256 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGIN 130 + EK+FH FD+ L Y FG+ V V C + + R QH LK L++ ++ Sbjct: 257 NPNIEKVFHGCDFDMIWLSYNFGLYV--VNCID-SGQCARALKLQHFSLKYLLQKYCNVD 313 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 K Q +DW L+ E ++YA D +L Sbjct: 314 ADKKYQLADWRLRPLTKEMIEYARGDTHYL 343 >gi|256825389|ref|YP_003149349.1| ribonuclease D [Kytococcus sedentarius DSM 20547] gi|256688782|gb|ACV06584.1| ribonuclease D [Kytococcus sedentarius DSM 20547] Length = 431 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R R +F T++ RL + GL ++ L + ++K Sbjct: 86 EWVLHAATQDLPCLA-DLGLRPRSLFDTELGGRLV--GLPRVGLAAVVEHYLDLTLAKEH 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L YAA DV L +R L+RLGR + A Sbjct: 143 SAVDWSTRPLPTDWLVYAALDVEVLVEVRDAMEADLERLGRDEWA 187 >gi|239991576|ref|ZP_04712240.1| putative ribonuclease D [Streptomyces roseosporus NRRL 11379] Length = 384 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 14/162 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKI 78 +AVD E R +VQL G VD + P+L G+ + E I Sbjct: 22 VAVDAERASGYRYGQRAYLVQLRREGAGSALVDPV-------GCPDLSGLGTALDGTEWI 74 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L G+ +F T++A RL + GL ++ +LG + K + Sbjct: 75 LHAATQDLPCL-RDIGMTPTSLFDTELAGRLA--GFPRVGLGAMVENVLGYALEKGHSAV 131 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DWS L + L+YAA DV L LR E+L R G+ + A Sbjct: 132 DWSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGKLEWA 173 >gi|183231928|ref|XP_650756.2| exosome component 10 [Entamoeba histolytica HM-1:IMSS] gi|169802269|gb|EAL45368.2| exosome component 10, putative [Entamoeba histolytica HM-1:IMSS] Length = 517 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 13/150 (8%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDII--RIAAGQKNAPNLVGMLV 71 + +V+ AVD E +C++Q+S D +D I R + N P Sbjct: 202 SLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYIIDTITLRDSITLLNDP-----FT 256 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGIN 130 + EK+FH FD+ L Y FG+ V V C + + R QH LK L++ ++ Sbjct: 257 NPNIEKVFHGCDFDMIWLSYNFGLYV--VNCID-SGQCARALKLQHFSLKYLLQKYCNVD 313 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 K Q +DW L+ E ++YA D +L Sbjct: 314 ADKKYQLADWRLRPLTKEMIEYARGDTHYL 343 >gi|297191335|ref|ZP_06908733.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486] gi|197720654|gb|EDY64562.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486] Length = 428 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L V R +F T++A RL + GL ++ +LG + K Sbjct: 115 EWILHAATQDLPCLREIGMVPAR-IFDTELAGRLG--GFPRVGLGAMVESVLGYALEKGH 171 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L+YAA DV L LR ++L R G+ D A Sbjct: 172 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWA 216 >gi|298526151|ref|ZP_07013560.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A] gi|298495945|gb|EFI31239.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A] Length = 375 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R ++ T++A RL ++ L ++ LLG+ ++K Sbjct: 109 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 165 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L L YAA DV L LR + L G++D A Sbjct: 166 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWA 210 >gi|242008039|ref|XP_002424820.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508370|gb|EEB12082.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 843 Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 25/167 (14%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKIFH 80 ++VD E + L + +L ++Q+ +G V + + A L +L ++ K+ H Sbjct: 401 VSVDCEGINL-GSKGKLTLIQIGTMNGNVYVFDLVTCSNLFEAGGLARLLTSDQVIKVIH 459 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIAS---RLTRTYTNQHGLKD----NLKELLGI---- 129 R D + +++ FGV +R VF TK A ++ H +KD L E+ + Sbjct: 460 DCRNDSSTIYFQFGVILRNVFDTKSAHAVIQMQEMGKPVHKVKDVSLNTLYEIYNLPTNP 519 Query: 130 ------NISKAQQSSDWSADDLSDEQLQYAASDVV----HLHALRLQ 166 NI K Q W LS + + YAA+DV+ HL++L L+ Sbjct: 520 MKEYFKNIYKKDQKI-WGRRPLSRDMIVYAAADVLSLVPHLYSLMLK 565 >gi|326513036|dbj|BAK03425.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 490 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (58%) Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 TR L +ELL +++SK Q SDWS LS+ Q+QYAASD +L Sbjct: 164 TRLPKETKSLASICEELLNVSLSKELQCSDWSCRPLSEGQIQYAASDAYYL 214 >gi|171910647|ref|ZP_02926117.1| ribonuclease D, putative [Verrucomicrobium spinosum DSM 4136] Length = 381 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 10/143 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE L +++LC++QL+ +G +I P L V + E FH Sbjct: 42 VYLDTEADSLHHFQEKLCLIQLA-ANGIYALIDPLVLSDLGPLLE---VVDNAEVWFHSA 97 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ +L T + T++A+RLT RT+ GL +++ G+ + K+ Q DW Sbjct: 98 DYDLTLLKRTCNWTPTHLKDTQVAARLTGHRTF----GLAALVEQHCGVTLCKSSQKEDW 153 Query: 141 SADDLSDEQLQYAASDVVHLHAL 163 S L + YA DV +L L Sbjct: 154 SLRPLPAKMQAYAVDDVRYLGRL 176 >gi|114047748|ref|YP_738298.1| ribonuclease D [Shewanella sp. MR-7] gi|113889190|gb|ABI43241.1| ribonuclease D [Shewanella sp. MR-7] Length = 384 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%) Query: 77 KIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISK 133 K+ H D+ V F +G R P+F ++IA+ L HGL ++ LG I K Sbjct: 93 KLVHSCSEDLEV-FAHYGQRQPTPLFDSQIAASLCGM---GHGLGYAKLVETCLGEVIDK 148 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLG 175 + +DW L++ QL YAA+DV++L+ L Q +KL+ RLG Sbjct: 149 GESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLG 193 >gi|304312978|ref|YP_003812576.1| Ribonuclease D [gamma proteobacterium HdN1] gi|301798711|emb|CBL46944.1| Ribonuclease D [gamma proteobacterium HdN1] Length = 377 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 3/125 (2%) Query: 69 MLVDEKREK--IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 ML++E ++ + H D+ V + + T++A+ + Q L++ L Sbjct: 70 MLLNENQQPTWVLHSCAEDLEVALNQWDALPNRLVDTQLAAA-HLGHPRQMSLQNLLAVE 128 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 LG+++ K + SDW LS QL YAA DV HL L + + L R T C Sbjct: 129 LGVHLPKDETRSDWCKRPLSSAQLSYAAGDVAHLLPLWEKLSHTLHERDRMSWFTEDCAK 188 Query: 187 LMDRA 191 L+ +A Sbjct: 189 LIAKA 193 >gi|167533742|ref|XP_001748550.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773069|gb|EDQ86714.1| predicted protein [Monosiga brevicollis MX1] Length = 471 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 15/117 (12%) Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------------TNQHGL 119 ++E I H G+ D+ +L + VF T++A + T N GL Sbjct: 146 QKEIILHSGQTDLDLLTEVNEAPLERVFDTQLAYLINATLFIRNPQVAANLLGIRNTIGL 205 Query: 120 KDNLKELLG-INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 D + + + + K Q SDW L+DEQL YA SDV HL +R + + L G Sbjct: 206 ADLVTHMFPEVKMDKGQALSDWRVRPLNDEQLLYAISDVEHLIEMRHRLQDALSARG 262 >gi|113970513|ref|YP_734306.1| ribonuclease D [Shewanella sp. MR-4] gi|113885197|gb|ABI39249.1| ribonuclease D [Shewanella sp. MR-4] Length = 384 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%) Query: 77 KIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISK 133 K+ H D+ V F +G R P+F ++IA+ L HGL ++ LG I K Sbjct: 93 KLVHSCSEDLEV-FAHYGQRQPTPLFDSQIAASLCGM---GHGLGYAKLVETCLGEVIDK 148 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLG 175 + +DW L++ QL YAA+DV++L+ L Q +KL+ RLG Sbjct: 149 GESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLG 193 >gi|291448576|ref|ZP_06587966.1| ribonuclease D [Streptomyces roseosporus NRRL 15998] gi|291351523|gb|EFE78427.1| ribonuclease D [Streptomyces roseosporus NRRL 15998] Length = 373 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 14/162 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKI 78 +AVD E R +VQL G VD + P+L G+ + E I Sbjct: 62 VAVDAERASGYRYGQRAYLVQLRREGAGSALVDPV-------GCPDLSGLGTALDGTEWI 114 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L G+ +F T++A RL + GL ++ +LG + K + Sbjct: 115 LHAATQDLPCL-RDIGMTPTSLFDTELAGRLA--GFPRVGLGAMVENVLGYALEKGHSAV 171 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DWS L + L+YAA DV L LR E+L R G+ + A Sbjct: 172 DWSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGKLEWA 213 >gi|242048348|ref|XP_002461920.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor] gi|241925297|gb|EER98441.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor] Length = 505 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +ELL + +SK Q SDWS LS+ Q+QYAASD +L + F +K+ G+ T Sbjct: 192 EELLSVFLSKELQCSDWSCRPLSEGQIQYAASDAYYLLGIFDLFQKKITMEGQCSSTT 249 >gi|117920828|ref|YP_870020.1| ribonuclease D [Shewanella sp. ANA-3] gi|117613160|gb|ABK48614.1| ribonuclease D [Shewanella sp. ANA-3] Length = 388 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%) Query: 77 KIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISK 133 K+ H D+ V F +G R P+F ++IA+ L HGL ++ LG I K Sbjct: 97 KLVHSCSEDLEV-FAHYGQRQPTPLFDSQIAASLCGM---GHGLGYAKLVETCLGEVIDK 152 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLG 175 + +DW L++ QL YAA+DV++L+ L Q +KL+ RLG Sbjct: 153 GESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLG 197 >gi|294650367|ref|ZP_06727734.1| ribonuclease D [Acinetobacter haemolyticus ATCC 19194] gi|292823780|gb|EFF82616.1| ribonuclease D [Acinetobacter haemolyticus ATCC 19194] Length = 380 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 71/171 (41%), Gaps = 18/171 (10%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPG------DGTV-DIIRIAAGQKNAPNLVGMLVDEKRE 76 A+DTE + + +L + Q++ DGTV D+ NA + E + Sbjct: 25 ALDTEFIKVDTLYPKLGVCQINLDGQVALLDGTVLDLTHFWDKVFNAQQNIFHACSEDID 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I+HY D L F +V F + + L +Y N LK L I I K Q Sbjct: 85 LIYHYA--DQKPLHNIFDTQVAMAF---LGNGLQVSYQNA------LKTYLDIEIEKDQT 133 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 SDW A L+ +Q+ YAA+DV++L L LQ G C L Sbjct: 134 RSDWLARPLTPQQISYAANDVLYLPRLAEALKRDLQSKGIYHYVLEDCQNL 184 >gi|311742288|ref|ZP_07716097.1| ribonuclease D [Aeromicrobium marinum DSM 15272] gi|311313916|gb|EFQ83824.1| ribonuclease D [Aeromicrobium marinum DSM 15272] Length = 411 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 3/113 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R R +F T+ A RL + GL ++ LG +++K Sbjct: 102 EWILHAATQDLPCL-AEIGLRPRALFDTEHAGRLLNL--PRVGLATLVEHFLGRSLAKEH 158 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++DWS L + L YAA DV L LR +L+ G+ + A L+ Sbjct: 159 SAADWSTRPLPEPWLVYAALDVEVLVELRDLLDAELREAGKREWAAQDFEALL 211 >gi|320007817|gb|ADW02667.1| 3'-5' exonuclease [Streptomyces flavogriseus ATCC 33331] Length = 424 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 3/101 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 112 EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLA--GFPRVGLGAIVENVLGYALEKGH 168 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + DWS L D L+YAA DV L LR E+L R G+ Sbjct: 169 SAVDWSTRPLPDPWLRYAALDVELLVDLRNALEEELDRQGK 209 >gi|317152629|ref|YP_004120677.1| 3'-5' exonuclease [Desulfovibrio aespoeensis Aspo-2] gi|316942880|gb|ADU61931.1| 3'-5' exonuclease [Desulfovibrio aespoeensis Aspo-2] Length = 203 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 28/40 (70%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 HGL++ LLG ISK+ Q S+W+ + L+ +Q+ YAA+D Sbjct: 147 HGLRNMAANLLGFRISKSAQCSNWAKEHLTPQQITYAATD 186 >gi|184158040|ref|YP_001846379.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ACICU] gi|332874500|ref|ZP_08442403.1| putative ribonuclease D [Acinetobacter baumannii 6014059] gi|183209634|gb|ACC57032.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ACICU] gi|322508359|gb|ADX03813.1| Ribonuclease D, processes tRNA [Acinetobacter baumannii 1656-2] gi|323517981|gb|ADX92362.1| ribonuclease D, processes tRNA [Acinetobacter baumannii TCDC-AB0715] gi|332737344|gb|EGJ68268.1| putative ribonuclease D [Acinetobacter baumannii 6014059] Length = 374 Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 72 QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV++L L ++L++ G + C+ L Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 184 >gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii] gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii] Length = 512 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 2/138 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVD E + +C++Q+S + + P L + + K+ H Sbjct: 246 IAVDLENHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGS 305 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+R+ R + GL L+ G+ K Q +DW Sbjct: 306 DRDILWLQRDFGIYVCNLFDTGQAARVLRM--ERFGLAFLLQTFCGVTPDKRYQLADWRL 363 Query: 143 DDLSDEQLQYAASDVVHL 160 LS E L+YA D +L Sbjct: 364 RPLSAEMLKYAREDTHYL 381 >gi|239501841|ref|ZP_04661151.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AB900] gi|332851689|ref|ZP_08433614.1| putative ribonuclease D [Acinetobacter baumannii 6013150] gi|332865936|ref|ZP_08436716.1| putative ribonuclease D [Acinetobacter baumannii 6013113] gi|332729696|gb|EGJ61031.1| putative ribonuclease D [Acinetobacter baumannii 6013150] gi|332734986|gb|EGJ66072.1| putative ribonuclease D [Acinetobacter baumannii 6013113] Length = 374 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 72 QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV++L L ++L++ G + C+ L Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 184 >gi|262370490|ref|ZP_06063816.1| ribonuclease D [Acinetobacter johnsonii SH046] gi|262314832|gb|EEY95873.1| ribonuclease D [Acinetobacter johnsonii SH046] Length = 380 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLK----DNLKELLGI 129 ++ +FH DI +++ Y + VF T++ HGL+ + LK++L + Sbjct: 72 QQNVFHACSEDIDLIYHYAQHKTLNNVFDTQVGMSFLG-----HGLQVSYQNALKQMLDV 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K + S+W A LS QL YAA+DV++L L + ++L A C L Sbjct: 127 DIDKGETRSNWLARPLSPAQLSYAANDVLYLMNLSEKVKQELDSKSLLHFALEDCQHL 184 >gi|256822615|ref|YP_003146578.1| ribonuclease D [Kangiella koreensis DSM 16069] gi|256796154|gb|ACV26810.1| ribonuclease D [Kangiella koreensis DSM 16069] Length = 384 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTE RL ++Q+ G I +A +A L + K H Sbjct: 37 LAVDTEFDRTNTYFHRLALIQIYDGKEIYLIDPLAFDDLSA--LTELFASTSVVKALHSC 94 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ L++ +G VF T+IA+ L + G + ++ L + + K +DW Sbjct: 95 SEDLEALYHQYGFEFNQVFDTQIAASLDGIGLSV-GYGNIVEHFLSVVLDKEHTKTDWLQ 153 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 LS EQ YAA DV +L + + + L G Sbjct: 154 RPLSQEQRVYAAQDVQYLMPVYYRLRDSLLEKG 186 >gi|260555081|ref|ZP_05827302.1| ribonuclease D [Acinetobacter baumannii ATCC 19606] gi|260411623|gb|EEX04920.1| ribonuclease D [Acinetobacter baumannii ATCC 19606] Length = 246 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 72 QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV++L L ++L++ G + C+ L Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 184 >gi|169796039|ref|YP_001713832.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AYE] gi|213157227|ref|YP_002319272.1| ribonuclease D [Acinetobacter baumannii AB0057] gi|215483497|ref|YP_002325714.1| Ribonuclease D(RNase D) [Acinetobacter baumannii AB307-0294] gi|301345593|ref|ZP_07226334.1| ribonuclease D [Acinetobacter baumannii AB056] gi|301510304|ref|ZP_07235541.1| ribonuclease D [Acinetobacter baumannii AB058] gi|301597268|ref|ZP_07242276.1| ribonuclease D [Acinetobacter baumannii AB059] gi|169148966|emb|CAM86843.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AYE] gi|213056387|gb|ACJ41289.1| ribonuclease D [Acinetobacter baumannii AB0057] gi|213988267|gb|ACJ58566.1| Ribonuclease D(RNase D) [Acinetobacter baumannii AB307-0294] Length = 374 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 72 QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV++L L ++L++ G + C+ L Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 184 >gi|50954730|ref|YP_062018.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951212|gb|AAT88913.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07] Length = 398 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+ +F T++A+RL + GL ++ELLGI+++K Sbjct: 77 EWVLHAATQDLTCL-REVGLDPVTIFDTELAARLL--GMPRVGLGTVVEELLGIHLTKEH 133 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALR 164 ++DWS L L+YAA DV L LR Sbjct: 134 SAADWSTRPLPGPWLEYAALDVELLPDLR 162 >gi|193077320|gb|ABO12113.2| ribonuclease D [Acinetobacter baumannii ATCC 17978] Length = 374 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 72 QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV++L L ++L++ G + C+ L Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 184 >gi|293334443|ref|NP_001170525.1| hypothetical protein LOC100384536 [Zea mays] gi|238005848|gb|ACR33959.1| unknown [Zea mays] Length = 666 Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 16/180 (8%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAA 58 T ++ H+G + V AVD E + C++Q+S D VD +++ Sbjct: 151 FTLVQDHKGLTELAKKLKSVTEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRI 210 Query: 59 GQKNAPNLVGMLVDEK-----REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 +G+ + E + K+ H DI L F + V +F T ASR+ + Sbjct: 211 -------YIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQME 263 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 N L+ L G+ K Q++DW + L DE ++YA D +L + ++LQR Sbjct: 264 RN--SLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQR 321 >gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 524 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 10/143 (6%) Query: 40 CIVQLS--PGDGTVDII--RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 C++Q+S D +D + RI G L + D + K+ H DI L F V Sbjct: 4 CLMQISTRSEDFIIDTLKLRIYIGSY----LKEIFKDPTKRKVMHGADRDIMWLQRDFRV 59 Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155 V +F T ASR+ + N L+ L G+ +K Q++DW + LSDE ++YA Sbjct: 60 YVCNLFDTGQASRVLQMERNS--LEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYARE 117 Query: 156 DVVHLHALRLQFTEKLQRLGRSD 178 D +L + +LQR S+ Sbjct: 118 DTHYLLYIYDLMRLRLQRESTSE 140 >gi|119717898|ref|YP_924863.1| 3'-5' exonuclease [Nocardioides sp. JS614] gi|119538559|gb|ABL83176.1| 3'-5' exonuclease [Nocardioides sp. JS614] Length = 442 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 3/108 (2%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E E I H D+ L G+ +F T++A RL + GL ++ LLG ++ Sbjct: 113 EGTEWILHAATQDLPCL-AEVGLLPSRLFDTELAGRLL--GYPRVGLATLVETLLGSRLA 169 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 K + DWS L + L+YAA DV L LR ++L+ G+++ A Sbjct: 170 KEHSAVDWSTRPLPEPWLEYAALDVEVLAELRDLLADELETAGKAEWA 217 >gi|282866537|ref|ZP_06275580.1| 3'-5' exonuclease [Streptomyces sp. ACTE] gi|282558584|gb|EFB64143.1| 3'-5' exonuclease [Streptomyces sp. ACTE] Length = 384 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + GL ++ LLG + K Sbjct: 72 EWILHAATQDLPCL-RDIGMVPTSLFDTELAGRLA--GFPRVGLGAIVENLLGYALEKGH 128 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L D L+YAA DV L LR +L+R G+ + A Sbjct: 129 SAVDWSTRPLPDPWLRYAALDVELLVDLRDALEAELERQGKLEWA 173 >gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea sp. MED297] gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297] Length = 380 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 9/165 (5%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLV 71 E AA V IA+DTE + L ++Q+ D +D ++I AP LV +L Sbjct: 20 EWAAASV--IALDTEFVRTDSFYAHLGLIQVGIEDQVWLIDPLQI---NDWAP-LVRVLS 73 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D K+ H D VL + GV ++ VF T+IA+ + Q ++ + + + Sbjct: 74 DPAIVKVLHALSEDAEVLAHHLGVELQNVFDTQIAAGFL-GHPVQMSYARLVEAICDVEL 132 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K SDW L+DEQ YAA+DV+ L+ + +L+ R Sbjct: 133 PKEATRSDWLQRPLADEQCFYAAADVLWLYRVYQHCAAQLKEQNR 177 >gi|126641731|ref|YP_001084715.1| ribonuclease D [Acinetobacter baumannii ATCC 17978] Length = 318 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 16 QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 70 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV++L L ++L++ G + C+ L Sbjct: 71 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 128 >gi|289641274|ref|ZP_06473440.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata] gi|289508872|gb|EFD29805.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata] Length = 474 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 3/101 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R +F T++A RL + GL ++++LG + K Sbjct: 107 EWVLHAANQDLPCL-AEVGLRPSRLFDTELAGRLL--GYERVGLGIMVEKVLGFTLEKGH 163 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++DWS L + L+YAA DV L LR +L+ G+ Sbjct: 164 SAADWSTRPLPEPWLRYAALDVELLVELRDALETELETQGK 204 >gi|291299881|ref|YP_003511159.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728] gi|290569101|gb|ADD42066.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728] Length = 407 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 8/159 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +AVD E + R ++QL G GT + G ++ L L D E I H Sbjct: 47 VAVDAERASGFRYQPRAYLIQLRRAGAGTALVD--PTGFEDLRELNAALADT--EWILHA 102 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L G+R +F T++A+RL + GL +++LLG + K ++DWS Sbjct: 103 ASQDLPCLAGE-GMRPPRLFDTELAARLC--GFERVGLAALVEKLLGFTLEKHHSAADWS 159 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L + L YAA DV L LR +L+ G+ D A Sbjct: 160 TRPLPADWLTYAALDVELLVELRDILDAELRLQGKRDWA 198 >gi|167855622|ref|ZP_02478381.1| ribonuclease D [Haemophilus parasuis 29755] gi|167853249|gb|EDS24504.1| ribonuclease D [Haemophilus parasuis 29755] Length = 388 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 16/176 (9%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IA+DTE + +L ++QL G +D + I + +L +E K+ Sbjct: 41 VIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLSIT----DFSPFTALLTNENVLKVL 96 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINISKAQ 135 H D+ V + F +P+ T++ + G+ +L L + + K Sbjct: 97 HACSEDLEVFQHYFKQLPQPMLDTQVMAGFVGI-----GISIGFAKLALHYLEVELDKGA 151 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR-LGRSDLATSCCNFLMDR 190 +DW + LS+ QLQYA +DV +L + + E L + L ++ + C L R Sbjct: 152 SRTDWLSRPLSEIQLQYACADVWYLLPIYHKLAEDLAKTLWQTAVVEECATLLAKR 207 >gi|297156498|gb|ADI06210.1| ribonuclease D [Streptomyces bingchenggensis BCW-1] Length = 424 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 71/162 (43%), Gaps = 14/162 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78 +AVD E R +VQL G GT I + P+L G+ + D E + Sbjct: 62 VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV-----GCPDLSGLGDAIADA--EWV 114 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L G+ +F T++A RL + GL ++ +LG + K + Sbjct: 115 LHAATQDLPCL-RDIGMLPGRLFDTELAGRLA--GFARVGLGAMVENILGYALEKGHSAV 171 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DWS L D L YAA DV L LR E+L R G+ + A Sbjct: 172 DWSTRPLPDPWLHYAALDVELLVDLRDALEEELTRQGKLNWA 213 >gi|134098409|ref|YP_001104070.1| putative ribonuclease D (partial match) [Saccharopolyspora erythraea NRRL 2338] gi|291003374|ref|ZP_06561347.1| ribonuclease D [Saccharopolyspora erythraea NRRL 2338] gi|133911032|emb|CAM01145.1| putative ribonuclease D (partial match) [Saccharopolyspora erythraea NRRL 2338] Length = 419 Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 7/152 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +AVDTE R +VQL G GTV + IA P L L D E + H Sbjct: 52 VAVDTERASGYRYSQRAYLVQLRREGAGTVLVDPIALAGSLEP-LATALDDT--EWVLHA 108 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L +R +F T++A RL ++ L ++ +LG + K ++DWS Sbjct: 109 ASQDLPCL-AELDLRPARLFDTELAGRLA--GFDRVSLGALVERMLGYRLEKGHSAADWS 165 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L + L YAA DV L ALR +L+R Sbjct: 166 RRPLPADWLAYAALDVELLVALREAMHAELER 197 >gi|329940178|ref|ZP_08289460.1| ribonuclease [Streptomyces griseoaurantiacus M045] gi|329301004|gb|EGG44900.1| ribonuclease [Streptomyces griseoaurantiacus M045] Length = 428 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R +F T++A RL + GL ++ +LG + K Sbjct: 116 EWVLHAATQDLPCL-REIGMRPTRLFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGH 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 217 >gi|302337887|ref|YP_003803093.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293] gi|301635072|gb|ADK80499.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293] Length = 284 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 32/177 (18%) Query: 17 ARYVDAIAVDTE-TLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGM-LVD 72 AR V IAVD E L + LC+VQ+ G+ VD P +V + LV Sbjct: 23 ARGVREIAVDIEGEFNLHRYGEHLCLVQVWDGEVLAIVD-----------PLVVDLALVR 71 Query: 73 EKREKIFHYGRF---------DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 E IF G F D +L+ +G+ V C + + + + + GL L Sbjct: 72 E----IFESGSFRKIVYDCSSDRTLLYRRYGIHFNEV-CDLMPAVVLLDFQKK-GLASVL 125 Query: 124 KELLGI--NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +L I K Q DW + + + L+YAA+DV+HL L+ + ++L+ G SD Sbjct: 126 SSVLHIEEKPKKKFQQYDWMSRPIDADALEYAAADVLHLFTLKEELFKRLEEEGLSD 182 >gi|296394326|ref|YP_003659210.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985] gi|296181473|gb|ADG98379.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985] Length = 470 Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R +F T++ R+ + GL ++ LLG+ ++K Sbjct: 115 EWVLHAADQDLPCL-AELGLRPAKLFDTELGGRIA--GFERVGLAALVEALLGVGLAKGH 171 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L E L YAA DV L +R L G++ A Sbjct: 172 GAADWSQRPLPPEWLNYAALDVELLIPMREALLAVLAEQGKTQWA 216 >gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S] gi|311888800|emb|CBH48112.1| putative RNase D [Rhodococcus equi 103S] Length = 445 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+ +F T++A RL + GL ++ LG+ + K Sbjct: 127 EWVLHSADQDLPCL-AELGLEPAALFDTELAGRLA--GFERVGLAAIVERTLGLELRKGH 183 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L D L YAA DV L LR +L G+++ A Sbjct: 184 GAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGKTEWA 228 >gi|260554178|ref|ZP_05826436.1| ribonuclease D(RNase D) [Acinetobacter sp. RUH2624] gi|260404684|gb|EEW98196.1| ribonuclease D(RNase D) [Acinetobacter sp. RUH2624] Length = 374 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 72 QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV++L L ++L++ G + C L Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYECVLEDCRSL 184 >gi|118379200|ref|XP_001022767.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89304534|gb|EAS02522.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 722 Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 24/168 (14%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + +DTE LC++Q+S D +D++ I + Q L + + + KIF+ Sbjct: 47 LGIDTEQSFAKTYEGFLCLIQISTDQNDYLIDVLGINSKQGINECLSKVFLCKDIIKIFY 106 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRT-----------YTNQHGLKDNLKELLG 128 G+ DI L F + V F K AS L ++ Y N K KEL Sbjct: 107 AGQQDILWLKRDFDLSVVNYFDVKECASFLKKSDDNSLIQLIDRYCNYKLDKQKKKEL-- 164 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ-FTEKLQRLG 175 Q S+WS LS EQL YAA D +L +R + E +Q +G Sbjct: 165 -------QVSEWSNRPLSKEQLDYAALDSHYLIKIRYELLCETIQSVG 205 >gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG] Length = 704 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 99 PVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 P+F T IA+++ + G K ++ LG+ + K Q+SDWS+ LS EQL YAA D Sbjct: 195 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHLSQEQLLYAARD 254 Query: 157 VV 158 Sbjct: 255 AA 256 >gi|282899917|ref|ZP_06307878.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] gi|281195187|gb|EFA70123.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] Length = 317 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 9/131 (6%) Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--CTKIASRLTRTYTNQHGLKDNLKEL 126 ++VD + +K+FH FD+ L V F KI R+ +T TN LK EL Sbjct: 75 IMVDVQIQKVFHNADFDLKYLGKNSAKNVTCTFKVAKKIGHRILQT-TNL-KLKTLAVEL 132 Query: 127 LGI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 ++ K +SDW L ++QL+YAA D V+L A+ +L L D +S N Sbjct: 133 CHFSDVDKEGGASDWGKRPLCEKQLKYAAMDTVYLAAVH----RRLMELSDPDAVSSIFN 188 Query: 186 FLMDRAELDLL 196 D ++L Sbjct: 189 NNFDNTTPNIL 199 >gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49] gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49] Length = 704 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 99 PVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 P+F T IA+++ + G K ++ LG+ + K Q+SDWS+ LS EQL YAA D Sbjct: 195 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHLSQEQLLYAARD 254 Query: 157 VV 158 Sbjct: 255 AA 256 >gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus equi ATCC 33707] gi|325556528|gb|EGD26194.1| ribonuclease III [Rhodococcus equi ATCC 33707] Length = 413 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+ +F T++A RL + GL ++ LG+ + K Sbjct: 95 EWVLHSADQDLPCL-AELGLEPAALFDTELAGRLA--GFERVGLAAIVERTLGLELRKGH 151 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L D L YAA DV L LR +L G+++ A Sbjct: 152 GAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGKTEWA 196 >gi|72162300|ref|YP_289957.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX] gi|71916032|gb|AAZ55934.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX] Length = 420 Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L +R R +F T++A RL + GL ++ +LG+ ++K Sbjct: 107 EMVLHAAHQDLPCLTEVH-LRPRRLFDTELAGRLL--GYQRVGLGAMVERVLGVRLAKEH 163 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L ++ L+YAA DV L LR +L G+ + A Sbjct: 164 AAVDWSTRPLPEDWLRYAALDVEVLIELRDALEAELAETGKLEWA 208 >gi|309801464|ref|ZP_07695591.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022] gi|308221979|gb|EFO78264.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022] Length = 430 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G+ +F T+IA+RL + + GL + LG+ ++K ++DWS L + Sbjct: 106 FADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 YAA DV L L + +L+R G+ D A + + Sbjct: 164 RNYAALDVELLIELEQRMRTELKRQGKRDWAEEEFTYAL 202 >gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1] Length = 704 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 99 PVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 P+F T IA+++ + G K ++ LG+ + K Q+SDWS+ LS EQL YAA D Sbjct: 195 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHLSQEQLLYAARD 254 Query: 157 VV 158 Sbjct: 255 AA 256 >gi|306822549|ref|ZP_07455927.1| ribonuclease D [Bifidobacterium dentium ATCC 27679] gi|304554094|gb|EFM42003.1| ribonuclease D [Bifidobacterium dentium ATCC 27679] Length = 433 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G+ +F T+IA+RL + + GL + LG+ ++K ++DWS L + Sbjct: 109 FADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 166 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 YAA DV L L + +L+R G+ D A + + Sbjct: 167 RNYAALDVELLIELEQRMRTELKRQGKRDWAEEEFTYAL 205 >gi|305680942|ref|ZP_07403749.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266] gi|305659147|gb|EFM48647.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266] Length = 408 Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 15/170 (8%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 AVDTE + +R+C++Q+ +I + + + + +G ++ + + H Sbjct: 40 AVDTERVSGFRYHNRVCLLQIRRAGAGTMLIDVESDPQATTDFMGRVLTDT-GWVVHAAT 98 Query: 84 FDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ Y +R+RP +F T++A R + + L ++ LG+ + K DWS Sbjct: 99 SDLP---YLEQLRLRPAQLFDTELAGRFLGFH--RVNLAAMVEHYLGVRLRKNHGGEDWS 153 Query: 142 ADDLSDEQLQYAASDVVHL----HALRLQFTEKLQRLGRSDLATSCCNFL 187 + E L YAA DV +L A+R + T Q+ + + C++L Sbjct: 154 RRPIPSEWLDYAALDVEYLLPLADAMRSELT---QQSPKDEWVAEECDYL 200 >gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia] Length = 733 Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 9/158 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLV-DEKREKIF 79 I VD E + ++ IVQ+ + +D+I I + N+ + D+K K+F Sbjct: 60 IGVDIEHTNDIGFDGQISIVQIKDDEDVYIIDVIEIGVDNQKLINVFKQIFEDDKIIKVF 119 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA----Q 135 + G D+ L F + ++ F K + + ++ L K+ +SK+ Sbjct: 120 YAGSTDVLWLKRDFQITIQNFFDIKEVADECKL--SKISLIFLWKQYCDHQVSKSYKTNM 177 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 Q+SDW+ L+ EQL YAA D +L LR E+L + Sbjct: 178 QTSDWAERPLTQEQLIYAAYDCYYLPYLRYVLLEELSK 215 >gi|315080608|gb|EFT52584.1| 3'-5' exonuclease [Propionibacterium acnes HL078PA1] Length = 412 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 15/164 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76 IA+DTE R C++QL G GT VD + + A G K A L G + Sbjct: 38 IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H D+ L G+R +F T++ASRL + L ++ G+ + K Sbjct: 92 WILHAATQDMPCLAMD-GLRPDDLFDTELASRLLNL--PRVSLGPMVERYCGVTLLKEHS 148 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 >gi|300784546|ref|YP_003764837.1| ribonuclease D [Amycolatopsis mediterranei U32] gi|299794060|gb|ADJ44435.1| ribonuclease D [Amycolatopsis mediterranei U32] Length = 407 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 11/169 (6%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAP--NLVGMLVDEKREKI 78 A+AVDTE + +VQL G GTV I IA + AP ++ L E + Sbjct: 42 AVAVDTERASGYRYFPKAYLVQLRREGAGTVLIDPIALDGELAPLREVLNSL-----EWV 96 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L G+ +F T++A RL + L ++ LLG + K ++ Sbjct: 97 LHAASQDLPCL-AELGLHPAALFDTELAGRLA--GYERVALGTLVELLLGYTLEKGHSAA 153 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 DWS L + L YAA DV L LR + +L G+ + A F+ Sbjct: 154 DWSKRPLPVDWLNYAALDVELLIQLREKLEAELGAQGKLEWARQEFEFV 202 >gi|51246649|ref|YP_066533.1| ribonuclease D [Desulfotalea psychrophila LSv54] gi|50877686|emb|CAG37526.1| related to ribonuclease D [Desulfotalea psychrophila LSv54] Length = 374 Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 8/158 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDG---TVDIIRIAAGQKNAPNLVGMLVDE 73 A +DA+ +DTE + +L ++Q++ D +D + I K+ L +L D Sbjct: 20 ALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEECYAIDPLSI----KDLSPLGELLADR 75 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 KI H D+ ++ G + +F T++A+ + + L + E L + K Sbjct: 76 NTIKILHDAPQDLIIMSQATGATPQNIFDTRLAAGFAGSIST-ISLLQLVSEQLETELDK 134 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++ ++W L+++QL Y+ +DV +L A R+ K+ Sbjct: 135 SETRTNWLKRPLTEKQLSYSLNDVRYLRATRVILLSKI 172 >gi|255637101|gb|ACU18882.1| unknown [Glycine max] Length = 278 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 18/166 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R+ LC++QL+ D + I G++ L K+ H Sbjct: 61 IGFDCEGVDLC-RKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDC 119 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128 + D L++ FG+++ V T+IA L + L+D+ +G Sbjct: 120 KRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGKSYDE 179 Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + Q W LS++ ++ AA DV L + Q EKL Sbjct: 180 KEEVRVLLRQDPKFWRHRPLSEQMVRAAADDVRFLLYIYHQMMEKL 225 >gi|224003495|ref|XP_002291419.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973195|gb|EED91526.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 181 Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 10/159 (6%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKN 62 R+++G+ E + IA+D E +C++QLS G +I + + Sbjct: 18 RINDGEQSGE-----IREIALDLEAHSHRTFAGFVCLIQLSIHISSGYDFLIDALSLRHV 72 Query: 63 APNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 P +G +L + K+ H DI L FG V +F T ASR + + GL Sbjct: 73 IPTCLGPILANPNILKVMHGADSDIPWLQRDFGCYVVNLFDTGRASRALKFQSA--GLAF 130 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 L++ G++ KA Q SDW L D+ YA +D +L Sbjct: 131 LLRKYAGLDPDKAHQLSDWRRRPLPDDMRTYAVADTRYL 169 >gi|119505873|ref|ZP_01627938.1| ribonuclease D [marine gamma proteobacterium HTCC2080] gi|119458301|gb|EAW39411.1| ribonuclease D [marine gamma proteobacterium HTCC2080] Length = 380 Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V GV RP+ T K A+ L + + +D + +LL I+++K + Sbjct: 83 KILHSASEDLEVFERWLGVLPRPMIDTQKAAAMLGLGFGLSY--RDLVHDLLSIDVAKDE 140 Query: 136 QSSDWSADDLSDEQLQYAASDVVHL 160 SDW L+D Q YA DV L Sbjct: 141 TQSDWLVRPLTDAQCHYAMQDVTFL 165 >gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1] gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1] Length = 422 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E E I H D+ L G+ +F T++A RL + GL ++ +LG + Sbjct: 101 EGTEWILHAATQDLPCL-SDLGLHPAALFDTELAGRLL--GYPRVGLGTLVETVLGFTML 157 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 K ++DWS L D L+YAA DV L LR +L G+ A ++L Sbjct: 158 KEHSAADWSTRPLPDAWLEYAALDVEVLVELREALAAELVAQGKDAWARQEFDWL 212 >gi|89274974|gb|ABD65937.1| ribonuclease D [Streptomyces fungicidicus] Length = 430 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L V R +F T++A RL + GL ++ +LG + K Sbjct: 116 EWVLHAATQDLPCLREIGMVPSR-LFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGH 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L+YAA DV L LR ++L R G+ D A Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWA 217 >gi|302557678|ref|ZP_07310020.1| ribonuclease D [Streptomyces griseoflavus Tu4000] gi|302475296|gb|EFL38389.1| ribonuclease D [Streptomyces griseoflavus Tu4000] Length = 430 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L V R +F T++A RL + GL ++ +LG + K Sbjct: 116 EWVLHAATQDLPCLREIGMVPSR-LFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGH 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L+YAA DV L LR ++L R G+ D A Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWA 217 >gi|326561643|gb|EGE11980.1| ribonuclease D [Moraxella catarrhalis 103P14B1] gi|326562606|gb|EGE12917.1| ribonuclease D [Moraxella catarrhalis 46P47B1] gi|326571165|gb|EGE21189.1| ribonuclease D [Moraxella catarrhalis BC7] gi|326573455|gb|EGE23423.1| ribonuclease D [Moraxella catarrhalis 101P30B1] gi|326577111|gb|EGE27005.1| ribonuclease D [Moraxella catarrhalis O35E] Length = 407 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G L E+LGI I K + S+W A LS EQ YAA+DV +L KL + Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLL--------KLYEVV 185 Query: 176 RSDLA 180 R++LA Sbjct: 186 RTELA 190 >gi|326560439|gb|EGE10821.1| ribonuclease D [Moraxella catarrhalis 7169] gi|326565826|gb|EGE15988.1| ribonuclease D [Moraxella catarrhalis BC1] gi|326570481|gb|EGE20521.1| ribonuclease D [Moraxella catarrhalis BC8] Length = 407 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G L E+LGI I K + S+W A LS EQ YAA+DV +L KL + Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLL--------KLYEVV 185 Query: 176 RSDLA 180 R++LA Sbjct: 186 RTELA 190 >gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens] Length = 515 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 5/149 (3%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 D+ +C R IAVD E + +C++Q+S + +A P+L + Sbjct: 233 DMAMKC--RLAGEIAVDLENHNYRSFQGFVCLMQVSTRSEDFIVDALALRSHMGPSLKDL 290 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLG 128 D +K+ H DI L FG+ V +F T + A+R+ + GL ++ L Sbjct: 291 FADANVKKVMHGADRDIEWLQRDFGIYVCNMFDTGQQAARVLQ--LEGFGLAFLMQRFLK 348 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDV 157 IN K Q +DW L E ++YA D Sbjct: 349 INPDKRYQLADWRIRPLPAEMIKYAREDT 377 >gi|296113063|ref|YP_003627001.1| ribonuclease D [Moraxella catarrhalis RH4] gi|295920757|gb|ADG61108.1| ribonuclease D [Moraxella catarrhalis RH4] gi|326563584|gb|EGE13838.1| ribonuclease D [Moraxella catarrhalis 12P80B1] Length = 407 Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G L E+LGI I K + S+W A LS EQ YAA+DV +L KL + Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLL--------KLYEVV 185 Query: 176 RSDLA 180 R++LA Sbjct: 186 RTELA 190 >gi|256784454|ref|ZP_05522885.1| ribonuclease [Streptomyces lividans TK24] Length = 384 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 14/162 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78 +AVD E R +VQL G G+ I +A P+L G+ + D E + Sbjct: 22 VAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC-----PDLSGLGAAIADA--EWV 74 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L V R +F T++A RL + GL ++ +LG + K + Sbjct: 75 LHAATQDLPCLREIGMVPTR-IFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGHSAV 131 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 132 DWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 173 >gi|325120662|emb|CBZ56217.1| putative 3'-5' exonuclease domain-containing protein [Neospora caninum Liverpool] Length = 480 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 40/94 (42%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P LV +LV +K ++ L FGV + C A+ TN L+ Sbjct: 28 PGLVSLLVRPDVQKATQGATGEVEALQREFGVAAKNFLCLHAAAIALGCATNSRSLQALC 87 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 L + K+ Q S WS D LS EQ YAA+D Sbjct: 88 GVFLRSYLDKSLQLSTWSRDALSPEQCMYAATDA 121 >gi|21224360|ref|NP_630139.1| ribonuclease [Streptomyces coelicolor A3(2)] gi|3169042|emb|CAA19240.1| putative ribonuclease [Streptomyces coelicolor A3(2)] Length = 394 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 14/162 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78 +AVD E R +VQL G G+ I +A P+L G+ + D E + Sbjct: 32 VAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC-----PDLSGLGAAIADA--EWV 84 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L V R +F T++A RL + GL ++ +LG + K + Sbjct: 85 LHAATQDLPCLREIGMVPTR-IFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGHSAV 141 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 142 DWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 183 >gi|302674116|ref|XP_003026743.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8] gi|300100427|gb|EFI91840.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8] Length = 297 Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PN++ + V+ K + I F + V G + ++ + S T L D Sbjct: 117 PNIIKVGVELKGDSILLLRHFAVPV---HNGWEISQLWKSMHPSIEVAPLTTHISLDDMA 173 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 + +LG+ + K QQ+SDWSA LS EQ++Y+ D Sbjct: 174 RIVLGVKVDKLQQTSDWSAPALSVEQIEYSYLD 206 >gi|171742685|ref|ZP_02918492.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC 27678] gi|283456244|ref|YP_003360808.1| ribonuclease D [Bifidobacterium dentium Bd1] gi|171278299|gb|EDT45960.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC 27678] gi|283102878|gb|ADB09984.1| Ribonuclease D [Bifidobacterium dentium Bd1] Length = 433 Score = 43.5 bits (101), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G+ +F T+IA+RL + + GL + LG+ ++K ++DWS L + Sbjct: 109 FADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 166 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 YAA DV L L + +L+R G+ D A Sbjct: 167 RNYAALDVELLIELEQRMRTELKRQGKRDWA 197 >gi|88857337|ref|ZP_01131980.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas tunicata D2] gi|88820534|gb|EAR30346.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas tunicata D2] Length = 375 Score = 43.5 bits (101), Expect = 0.020, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 2/114 (1%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V F G P+F T+ A L N G ++ LG+ I K++ Sbjct: 77 KVLHSPSEDVEV-FLKHGCIPSPIFDTQFALSLLGG-ANCLGFAIMVERFLGLTIDKSES 134 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LS QL+YAA DV +L + +++ LG ++ + L+ + Sbjct: 135 RTNWLQRPLSASQLEYAAGDVFYLLPCFEKIRAEIEALGFMNIVIGEGDLLVTK 188 >gi|326575647|gb|EGE25570.1| ribonuclease D [Moraxella catarrhalis CO72] Length = 407 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G L E+LGI I K + S+W A LS EQ YAA+DV +L KL + Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLL--------KLYEVV 185 Query: 176 RSDLA 180 R++LA Sbjct: 186 RTELA 190 >gi|227495500|ref|ZP_03925816.1| ribonuclease D [Actinomyces coleocanis DSM 15436] gi|226831047|gb|EEH63430.1| ribonuclease D [Actinomyces coleocanis DSM 15436] Length = 402 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 5/126 (3%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H DIA L G+ + +F T +A+RL + GL +++LG+ + K QS Sbjct: 92 ILHDADQDIASLRMC-GLEIPELFDTMLAARLLGF--QRFGLAAVCEQILGVTLDKNHQS 148 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA--ELDL 195 DWS L L+YAA DV L L + + L + R + A + ++ R + D Sbjct: 149 DDWSTRPLPRPWLRYAALDVELLTDLYEKMSHSLFKANRWEWAQQEFHNILTRPTKKPDS 208 Query: 196 LGWENV 201 W N+ Sbjct: 209 EPWRNL 214 >gi|169633537|ref|YP_001707273.1| ribonuclease D, processes tRNA [Acinetobacter baumannii SDF] gi|169152329|emb|CAP01251.1| ribonuclease D, processes tRNA [Acinetobacter baumannii] Length = 374 Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 10/118 (8%) Query: 75 REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129 ++ IFH DI +++ Y + VF T++ HGL+ + LK L I Sbjct: 72 QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +I K Q SDW A LS +QL YAA+DV+ L L ++L++ G + C+ L Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLFLMQLANHIKDQLKQKGLYEYVLEDCSSL 184 >gi|255647529|gb|ACU24228.1| unknown [Glycine max] Length = 345 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 18/167 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R+ LC++QL+ D + I G++ L K+ H Sbjct: 62 IGFDCEGVDLC-RKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDC 120 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128 + D L++ FG+++ T+IA L + L+D+ +G Sbjct: 121 KRDSEALYFQFGIKLNNAVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGISYDE 180 Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + + Q W+ LS++ ++ AA DV L + Q EKL Sbjct: 181 KEEVRVLLRQDPKFWTHRPLSEQMIRAAADDVRFLLYIYRQMMEKLN 227 >gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca] Length = 834 Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK G+ Sbjct: 356 LTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCGV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 414 ESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWER 458 >gi|302833517|ref|XP_002948322.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f. nagariensis] gi|300266542|gb|EFJ50729.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f. nagariensis] Length = 191 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 2/154 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + +AVD E + C++Q+S + +A + P L + D + K+FH Sbjct: 20 EELAVDLEHHSHRSFQGFTCLMQISTRTTDYVVDTLALRNQLGPALARVFADPRVVKVFH 79 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L F + + +F T A+R+ GL L+ + G+ K Q +DW Sbjct: 80 GADSDVDWLQRDFSLFLVNMFDTGQAARVLGL--PSFGLAYLLESICGVQADKRYQMADW 137 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 LS L YA D +L + + E+L L Sbjct: 138 RVRPLSPPMLHYARCDTHYLLYVYDKLREQLAAL 171 >gi|313812910|gb|EFS50624.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA1] Length = 412 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 15/164 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76 IA+DTE R C++QL G GT VD + + A G K A L G + Sbjct: 38 IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 92 WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L +G+ + A Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEVGKEEWA 192 >gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] Length = 585 Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 16/149 (10%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTET P+ RL V L G +D + + K AP L+ ++ K+ H + Sbjct: 27 IDTET---TPKDIRLFQVGLESGPIYVIDFLFV----KRAPELIKDII-AKKGVAGHNLK 78 Query: 84 FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 +D+ L + + F T + ++L N+ L G +I K +Q S+WS+ Sbjct: 79 YDLKYLM-KYDIHPYTTFDTMVGAQLIGL--NRVSLASVYNHFTGESIDKKEQFSNWSSK 135 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 +L++ Q+ YAA DV LRL + EKL+ Sbjct: 136 ELTESQIFYAAKDV---EVLRLLY-EKLK 160 >gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga] gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva] Length = 996 Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 12/137 (8%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 DTET R +C+VQLS + +D +I G+ N N + D K KI H Sbjct: 502 DTETY-----RGFICLVQLSTPEENYIIDPFKIF-GKMNKLNR--LTTDPKILKIMHGAS 553 Query: 84 FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 D+ L F + V +F T+ A+++ + L +++ I ++K Q SDWS Sbjct: 554 NDVVWLQRDFNIFVVNLFDTREAAKVLNL--AEQSLAKLIQKYFNIKLNKRFQLSDWSKR 611 Query: 144 DLSDEQLQYAASDVVHL 160 L E L YA D +L Sbjct: 612 PLDAEMLDYACCDSHYL 628 >gi|297243353|ref|ZP_06927286.1| ribonuclease D [Gardnerella vaginalis AMD] gi|296888600|gb|EFH27339.1| ribonuclease D [Gardnerella vaginalis AMD] Length = 476 Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F+ G+R R +F T+IA++L + GL + LG+ ++K ++DWS L + Sbjct: 106 FFDIGLRPRALFDTEIAAKLLGR--KRFGLSSVTEYYLGLTLAKEHSAADWSYRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 YAA DV L L +L++ G+ A L+++ Sbjct: 164 RNYAALDVELLIELEEVMRGELKKQGKLSWAEEEFKHLLNKG 205 >gi|330829588|ref|YP_004392540.1| ribonuclease D [Aeromonas veronii B565] gi|328804724|gb|AEB49923.1| Ribonuclease D [Aeromonas veronii B565] Length = 370 Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 1/108 (0%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ ++ + G + T++A+ Y G + E LG+ + K Q Sbjct: 76 ILHASGEDLELIQHQAGHLPNQMHDTQLATAFL-GYGVSVGFGALVNEFLGVELEKDQAR 134 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 +DW A L+ QL+YAA+DV +L L + KL+ G+ C Sbjct: 135 TDWLARPLTPRQLEYAAADVFYLMPLYEKVMAKLRESGKFAWFEQECQ 182 >gi|289768333|ref|ZP_06527711.1| ribonuclease [Streptomyces lividans TK24] gi|289698532|gb|EFD65961.1| ribonuclease [Streptomyces lividans TK24] Length = 428 Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 14/162 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78 +AVD E R +VQL G G+ I +A P+L G+ + D E + Sbjct: 66 VAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC-----PDLSGLGAAIADA--EWV 118 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L V R +F T++A RL + GL ++ +LG + K + Sbjct: 119 LHAATQDLPCLREIGMVPTR-IFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGHSAV 175 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 176 DWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 217 >gi|68536154|ref|YP_250859.1| hypothetical protein jk1077 [Corynebacterium jeikeium K411] gi|260578851|ref|ZP_05846757.1| ribonuclease D (RNase D) [Corynebacterium jeikeium ATCC 43734] gi|68263753|emb|CAI37241.1| rnd [Corynebacterium jeikeium K411] gi|258602998|gb|EEW16269.1| ribonuclease D (RNase D) [Corynebacterium jeikeium ATCC 43734] Length = 423 Score = 43.1 bits (100), Expect = 0.025, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 7/170 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 IA+DTE DR ++QL G GT I A Q A + +V+E E + H Sbjct: 35 IAIDTERASAYRYDDRAFLIQLRRHGSGTFLIDPEAEPQ--ATRRMAEVVNEA-EWVLHA 91 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L G R + + T+IA +L + GL L I + K + ++DWS Sbjct: 92 AHTDLPCLM-ALGWRPQVLHDTQIAGQLL--GAERIGLSGMLDAYFDIQVPKDKGNADWS 148 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 L+ L YAA DV L L E+L + GR++ C ++ A Sbjct: 149 RRPLTQAMLNYAALDVEWLLELLDCCLEELAKTGRTEWYIQECQHVLASA 198 >gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda melanoleuca] Length = 885 Score = 43.1 bits (100), Expect = 0.025, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK G+ Sbjct: 379 LTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCGV 436 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 437 ESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWER 481 >gi|265762514|ref|ZP_06091082.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255122|gb|EEZ26468.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 216 Score = 43.1 bits (100), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 18/81 (22%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD------VVH 159 + Y G++D +L+++ GI ISK+Q+ S+W AD L+D Q QYAA+D + H Sbjct: 127 QEYVRPFGIQDKSLQKIYGILFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH 186 Query: 160 LHALRLQFTEKLQRLGRSDLA 180 L E+L+R G +LA Sbjct: 187 L-------LEELKRTGNYELA 200 >gi|37523316|ref|NP_926693.1| ribonuclease D [Gloeobacter violaceus PCC 7421] gi|35214320|dbj|BAC91688.1| glr3747 [Gloeobacter violaceus PCC 7421] Length = 195 Score = 43.1 bits (100), Expect = 0.025, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 27/150 (18%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV------------GML 70 +AVDTET Q+S G V ++++ G A +++ + Sbjct: 30 LAVDTETAHWH---------QVSTGKNRVSLLQVWDGTSEAVSVIDCFAVDLTAFVEKTM 80 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL---- 126 + + K+ H +D+A L + R V CT +R T +++LK L Sbjct: 81 RNWEIVKLIHNAPYDLAYL--GGAAQARSVVCTLQMARSIPTSRRGALERNSLKALSAHF 138 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASD 156 LGI + K Q+S+W+ L+ EQL YAA D Sbjct: 139 LGIELDKRYQASNWALRPLTAEQLDYAALD 168 >gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii] Length = 2579 Score = 43.1 bits (100), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 99 PVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 P+F T IA+++ + G K ++ LG+ + K Q+SDWS+ LS EQL YAA D Sbjct: 2070 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHLSQEQLLYAARD 2129 Query: 157 VV 158 Sbjct: 2130 AA 2131 >gi|116670217|ref|YP_831150.1| 3'-5' exonuclease [Arthrobacter sp. FB24] gi|116610326|gb|ABK03050.1| 3'-5' exonuclease [Arthrobacter sp. FB24] Length = 449 Score = 43.1 bits (100), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E E I H D+ L G+ +F T++A+RL + GL +++LLG ++ Sbjct: 115 EGVEWILHAASQDLPCL-SELGMWPDKLFDTELAARLA--GLPRVGLAAVIEQLLGFGLA 171 Query: 133 KAQQSSDWSADDLSDEQLQYAASDV 157 K ++DWS L + L+YAA DV Sbjct: 172 KEHSAADWSTRPLPEPWLRYAALDV 196 >gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor] gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor] Length = 702 Score = 43.1 bits (100), Expect = 0.026, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 16/180 (8%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAA 58 T + H+G + + V AVD E + C++Q+S D VD +++ Sbjct: 151 FTLVEDHKGLVELAKKLKGVTEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRI 210 Query: 59 GQKNAPNLVGMLVDEK-----REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 +G+ + E + K+ H DI L F + V +F T ASR+ + Sbjct: 211 -------YIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQME 263 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 N L+ L G+ K Q++DW + L DE ++YA D +L + ++LQ+ Sbjct: 264 RN--SLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQK 321 >gi|257068547|ref|YP_003154802.1| ribonuclease D [Brachybacterium faecium DSM 4810] gi|256559365|gb|ACU85212.1| ribonuclease D [Brachybacterium faecium DSM 4810] Length = 399 Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 8/161 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + +AVD E R +VQL + GT I +A P + L+ E RE + Sbjct: 40 EPVAVDAERASSYRYSSRAYLVQLRTEAAGTALIDPLAF---TMPATLRSLLAE-REWVL 95 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+ +F T++A+RL + GL +++ LG+ ++K ++D Sbjct: 96 HAAGQDLPSLA-EIGLEPGGLFDTELAARLL--GMERVGLGAVVEDTLGLRLAKEHSAAD 152 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 WS L + L YAA DV L +R E+L+ + D A Sbjct: 153 WSRRPLPEGWLTYAALDVEVLVEVRDVLRERLREACKEDWA 193 >gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda melanoleuca] Length = 887 Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK G+ Sbjct: 356 LTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCGV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 414 ESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWER 458 >gi|53712323|ref|YP_098315.1| hypothetical protein BF1031 [Bacteroides fragilis YCH46] gi|60680496|ref|YP_210640.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343] gi|253563640|ref|ZP_04841097.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|52215188|dbj|BAD47781.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60491930|emb|CAH06690.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343] gi|251947416|gb|EES87698.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301162033|emb|CBW21577.1| putative 3'-5' exonuclease [Bacteroides fragilis 638R] Length = 216 Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 18/81 (22%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD------VVH 159 + Y G++D +L+++ GI ISK+Q+ S+W AD L+D Q QYAA+D + H Sbjct: 127 QEYVRPFGIQDKSLQKIYGILFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH 186 Query: 160 LHALRLQFTEKLQRLGRSDLA 180 L E+L+R G +LA Sbjct: 187 L-------LEELKRTGNYELA 200 >gi|325000861|ref|ZP_08121973.1| 3'-5' exonuclease [Pseudonocardia sp. P1] Length = 230 Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L +R +F T++A RL + GL ++ LLG+++ K Sbjct: 85 EWVLHAASQDLPCLG-ELDLRPASLFDTELAGRLA--GLPRVGLGPMVENLLGLSLEKGH 141 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L ++ L YAA DV L LR T L G+ + A Sbjct: 142 GAADWSRRPLPEDWLVYAALDVEVLIELRDVLTGLLDEQGKLEWA 186 >gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246] Length = 1454 Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 8/138 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +D ET GL RDR+ ++ L+ GT + A A + E + Sbjct: 915 VGLDLETTGLSHARDRVRLLSLATPSGTFLVDLFALPDPAAALAPLLEALTAVEVVGQNL 974 Query: 83 RFDIAVLFYTFGV--RVRPVFCTKIASRLTRT--YTNQHGLKDNLKELLGINISKAQQSS 138 FD+ L V RVR T +AS++ T H LKD LG+ + K Q++ Sbjct: 975 GFDLPFLMRLGFVPGRVRD---TMLASQVLHAGNRTTGHSLKDLAHRHLGLELDKGLQTA 1031 Query: 139 DWSADDLSDEQLQYAASD 156 DWS L+D L YAA D Sbjct: 1032 DWSG-PLTDAHLGYAARD 1048 >gi|225021280|ref|ZP_03710472.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii ATCC 33806] gi|224946013|gb|EEG27222.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii ATCC 33806] Length = 408 Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 15/170 (8%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 AVDTE + +R+C++Q+ +I + + + + +G ++ + + H Sbjct: 40 AVDTERVSGFRYHNRVCLLQIRRAGAGTMLIDVESDPQATTDFMGRVLADT-GWVVHAAT 98 Query: 84 FDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ Y +R+RP +F T++A R + + L ++ LG+ + K DWS Sbjct: 99 SDLP---YLEQLRLRPAQLFDTELAGRFLGFH--RVNLAAMVEYYLGVRLRKNHGGEDWS 153 Query: 142 ADDLSDEQLQYAASDVVHL----HALRLQFTEKLQRLGRSDLATSCCNFL 187 + E L YAA DV +L A+R + T Q+ + + C++L Sbjct: 154 RRPIPSEWLDYAALDVEYLLPLADAMRSELT---QQSPKDEWVAEECDYL 200 >gi|84496254|ref|ZP_00995108.1| putative ribonuclease D [Janibacter sp. HTCC2649] gi|84383022|gb|EAP98903.1| putative ribonuclease D [Janibacter sp. HTCC2649] Length = 428 Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 13/130 (10%) Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + E I H D+A L G+R +F T++ +RL + GL ++ LG+ ++K Sbjct: 116 RAEWILHAATQDLACLA-EVGLRPVQLFDTELGARLL--GLPRVGLAAVVEHYLGLALAK 172 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 + DWS L + L+YAA DV L LR L R +S+ A R E Sbjct: 173 EHSAVDWSTRPLPEPWLRYAALDVEVLTELRNLMGVDLARQDKSEWA---------RQEF 223 Query: 194 D-LLGWENVD 202 + LL WE + Sbjct: 224 EALLTWEPTE 233 >gi|257454439|ref|ZP_05619701.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60] gi|257448205|gb|EEV23186.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60] Length = 403 Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 14/171 (8%) Query: 20 VDAIAVDTETLGLMPRRDR----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 VD IA+DTE + +RD L ++Q++ G I I A + +L D Sbjct: 39 VDTIALDTEFI----KRDTFFPILALIQINTGKA---IYLIDAPKLYLEEFWEVLADIPT 91 Query: 76 EKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 + H D+ + + + +R VF T+I T N G + +L+E + +++ K Sbjct: 92 -VVLHACGEDLGIYYLLSNLPALRNVFDTQIGLGFL-TGENSLGYQKSLQETIAVHVDKG 149 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + SDW L+ EQ YA DV +L + + +L G A C Sbjct: 150 ESQSDWLQRPLTPEQESYAVDDVRYLLPMFVAIKTQLIEQGLWQYAVEDCQ 200 >gi|169234702|ref|NP_001108472.1| PM-Scl autoantigen-like protein [Bombyx mori] gi|18700467|dbj|BAB85201.1| PM-Scl autoantigen-like protein [Bombyx mori] gi|22474519|dbj|BAC10623.1| PM-Scl autoantigen-like protein [Bombyx mori] Length = 451 Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 8/147 (5%) Query: 20 VDAIAVDTE------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 V+ IAVD E GL C++Q+S +G II A +++ L + D Sbjct: 138 VEQIAVDVEHHSYRDLSGLYLILGITCLIQISTDEGGDFIIDALAVREHIHKLNVVFTDP 197 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+ K+FH D+ L FGV + +F T A++ LK L + G++ K Sbjct: 198 KKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAK--SLGLPALSLKFLLMKYCGVDTDK 255 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160 + +DW L D ++YA D +L Sbjct: 256 TYRLADWRIRPLPDVLIKYARMDTHYL 282 >gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis] Length = 680 Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 4/141 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D A+D E C+VQLS G I +A Q + L +L + + K+ H Sbjct: 136 DRTALDVEHHSTHTYSGLTCLVQLSTGSKDYLIDSLALRQ-DMHLLAPVLSNPRICKVIH 194 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA-QQSSD 139 G D L FG+ + VF T+ A ++ + Q L L+ GI K+ Q +D Sbjct: 195 GGGNDAVWLQRDFGLFLVNVFDTEKACQVLGYH--QRSLGALLQRFCGIQADKSLGQRAD 252 Query: 140 WSADDLSDEQLQYAASDVVHL 160 W LS E + YA DV HL Sbjct: 253 WRRRPLSAELIDYARRDVQHL 273 >gi|84995770|ref|XP_952607.1| DNA binding protein [Theileria annulata strain Ankara] gi|65302768|emb|CAI74875.1| DNA binding protein, putative [Theileria annulata] Length = 247 Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 11/125 (8%) Query: 35 RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94 +R + IVQ+ GD T I + PN GM + ++ H D+ +LF +G Sbjct: 101 KRCKPSIVQIC-GDSTC-FIYLIYKIGYIPN-KGMFITSFILQVSHGAPSDMRLLFKHYG 157 Query: 95 VRVRPVFCTKIA--SRLTRTYT-NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ 151 + CT L + Y LK+ + +L + ++K QQ S+W AD L +Q+ Sbjct: 158 TK-----CTNFVDLKDLCKDYNIYPASLKNATESVLNLKLNKKQQCSNWEADKLVPDQIS 212 Query: 152 YAASD 156 YA++D Sbjct: 213 YASTD 217 >gi|307325177|ref|ZP_07604381.1| 3'-5' exonuclease [Streptomyces violaceusniger Tu 4113] gi|306889323|gb|EFN20305.1| 3'-5' exonuclease [Streptomyces violaceusniger Tu 4113] Length = 425 Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 14/162 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78 +AVD E R +VQL G GT I + P+L G+ + D E + Sbjct: 62 VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV-----GCPDLSGLGAAIADA--EWV 114 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L + R +F T++A RL + GL ++ +LG + K + Sbjct: 115 LHAATQDLPCLRDIGMIPAR-IFDTELAGRLA--GFARVGLGAMVENILGYALEKGHSAV 171 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DWS L + L YAA DV L LR E+L+R + + A Sbjct: 172 DWSTRPLPEPWLHYAALDVELLVDLRDALEEELERQSKLEWA 213 >gi|29828773|ref|NP_823407.1| ribonuclease D [Streptomyces avermitilis MA-4680] gi|29605878|dbj|BAC69942.1| putative ribonuclease D [Streptomyces avermitilis MA-4680] Length = 426 Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L V R +F T++A RL + GL ++ +LG + K Sbjct: 112 EWVLHAATQDLPCLREIGMVPTR-LFDTELAGRLA--GFPRVGLGAMVESVLGFVLEKGH 168 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 169 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 213 >gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia] Length = 669 Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 2/156 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVD E + C++QLS I ++ L + + + K+FH Sbjct: 220 IAVDLEHNHSISYLGVTCLIQLSTRTQDYIIDPFPLWKQLGDMLSVVFTNPRIVKVFHGA 279 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ L FG+ + +F T AS+ Q+ + L E + K Q++DW+ Sbjct: 280 DNDVQWLQRDFGLYIVNLFDTFQASK--ELLLMQNSFQFLLSEYCKKSTDKTYQTADWTQ 337 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 LSDE ++YA D +L + + + L++L + + Sbjct: 338 RPLSDEMIKYAQIDTHYLLYIYDRMRQDLKKLNKPN 373 >gi|325963026|ref|YP_004240932.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3] gi|323469113|gb|ADX72798.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3] Length = 444 Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A+RL + GL +++LLG ++K Sbjct: 118 EWILHAASQDLPCL-SELGMWPDKLFDTELAARLA--GLPRVGLAAVIEQLLGFGLAKEH 174 Query: 136 QSSDWSADDLSDEQLQYAASDV 157 ++DWS L + L+YAA DV Sbjct: 175 SAADWSTRPLPEPWLRYAALDV 196 >gi|314988091|gb|EFT32182.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA2] Length = 412 Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76 IA+DTE R C++QL G GT VD + + A G K A L G + Sbjct: 38 IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 92 WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 149 ASDWSRRPLPRDWPGYAALDVELLNDLREKILSDLHEAGKEEWA 192 >gi|119026007|ref|YP_909852.1| hypothetical protein BAD_0989 [Bifidobacterium adolescentis ATCC 15703] gi|118765591|dbj|BAF39770.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 431 Score = 42.7 bits (99), Expect = 0.032, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G+ + +F T+IA+RL + GL + LG+ ++K ++DWS L + Sbjct: 106 FDELGMEPQRLFDTEIAARLL--GLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 YAA DV L L + +L+R G+ + A ++ + Sbjct: 164 RNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYAL 202 >gi|313801939|gb|EFS43173.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA2] Length = 412 Score = 42.7 bits (99), Expect = 0.032, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76 IA+DTE R C++QL G GT VD + + A G K A L G + Sbjct: 38 IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 92 WILHAATQDMPCLAMD-GLRPDALFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 >gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia] Length = 676 Score = 42.7 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 2/156 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVD E + C++QLS I ++ L + + K K+FH Sbjct: 220 IAVDLEHNHQISYLGITCLIQLSTRSQDYIIDPFPLWKQLGDMLSVIFANPKIVKVFHGA 279 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ L FG+ + +F T AS+ + Q+ + L E + K Q++DW+ Sbjct: 280 ENDVQWLQRDFGLYIVNLFDTFHASKELQLM--QNSFQFLLSEYCKKSTDKTYQTADWTQ 337 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L DE ++YA D +L + + + L++L + + Sbjct: 338 RPLPDEMIKYAQIDTHYLLYIYDRMRQDLKKLNKPN 373 >gi|333023774|ref|ZP_08451838.1| putative ribonuclease [Streptomyces sp. Tu6071] gi|332743626|gb|EGJ74067.1| putative ribonuclease [Streptomyces sp. Tu6071] Length = 431 Score = 42.7 bits (99), Expect = 0.032, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 10/160 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIFH 80 +AVD E R +VQL G GT I +A P+L G+ E H Sbjct: 68 VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC-----PDLSGLGAALANAEWDLH 122 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L G+ +F T++A RL + GL ++ +LG + K + DW Sbjct: 123 AATQDLPCL-REIGMVPHSLFDTELAGRLA--GFPRVGLGAMVENVLGYTLEKGHSAVDW 179 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 S L + L+YAA DV L LR ++L+R G+ + A Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWA 219 >gi|237836145|ref|XP_002367370.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii ME49] gi|211965034|gb|EEB00230.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii ME49] gi|221505945|gb|EEE31580.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma gondii VEG] Length = 672 Score = 42.7 bits (99), Expect = 0.033, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 36 RDRLCIVQL-SPGDGTVDII-RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 R L ++QL SP TV I +++A P L +L+ K+ ++ L F Sbjct: 196 RPPLALIQLASP---TVACIWQLSALGGLPPGLTALLLRADVVKVTQGATGEVEALQREF 252 Query: 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 GV R C A+ TN L+ L + K+ Q S WS D LS EQ YA Sbjct: 253 GVSPRNFLCLHAAAIALGCATNSRSLQALCGLFLERFLDKSLQLSTWSRDALSPEQCMYA 312 Query: 154 ASDV 157 A+D Sbjct: 313 ATDA 316 >gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301] gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301] Length = 892 Score = 42.7 bits (99), Expect = 0.033, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 12/118 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------LVG 68 R+ A+DTET GL PR +L + ++ G I + G ++ P L Sbjct: 314 RHAGRFAIDTETTGLNPRHAKLVGISVATAPGRAAYIPL--GHEDGPQLPRPLALERLAP 371 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D KIFH +FD+ VL PV T + S + HG+ D L L Sbjct: 372 VLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGM-DELSAL 428 >gi|302522528|ref|ZP_07274870.1| ribonuclease D [Streptomyces sp. SPB78] gi|302431423|gb|EFL03239.1| ribonuclease D [Streptomyces sp. SPB78] Length = 431 Score = 42.7 bits (99), Expect = 0.033, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 10/160 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIFH 80 +AVD E R +VQL G GT I +A P+L G+ E H Sbjct: 68 VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC-----PDLSGLGAALANAEWDLH 122 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L G+ +F T++A RL + GL ++ +LG + K + DW Sbjct: 123 AATQDLPCL-REIGMVPHSLFDTELAGRLA--GFPRVGLGAMVENVLGYTLEKGHSAVDW 179 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 S L + L+YAA DV L LR ++L+R G+ + A Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWA 219 >gi|154488712|ref|ZP_02029561.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis L2-32] gi|154082849|gb|EDN81894.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis L2-32] Length = 431 Score = 42.7 bits (99), Expect = 0.033, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G+ + +F T+IA+RL + GL + LG+ ++K ++DWS L + Sbjct: 106 FDELGMEPQRLFDTEIAARLL--GLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 YAA DV L L + +L+R G+ + A ++ + Sbjct: 164 RNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYAL 202 >gi|189096244|pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium Adolescentis Length = 440 Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G+ + +F T+IA+RL + GL + LG+ ++K ++DWS L + Sbjct: 108 FDELGMEPQRLFDTEIAARLL--GLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 165 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 YAA DV L L + +L+R G+ + A ++ + Sbjct: 166 RNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYAL 204 >gi|318061059|ref|ZP_07979780.1| ribonuclease D [Streptomyces sp. SA3_actG] gi|318079172|ref|ZP_07986504.1| ribonuclease D [Streptomyces sp. SA3_actF] Length = 431 Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 10/160 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIFH 80 +AVD E R +VQL G GT I +A P+L G+ E H Sbjct: 68 VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC-----PDLSGLGAALANAEWDLH 122 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L G+ +F T++A RL + GL ++ +LG + K + DW Sbjct: 123 AATQDLPCL-REIGMVPHSLFDTELAGRLA--GFPRVGLGAMVENVLGYTLEKGHSAVDW 179 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 S L + L+YAA DV L LR ++L+R G+ + A Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWA 219 >gi|312375236|gb|EFR22650.1| hypothetical protein AND_14417 [Anopheles darlingi] Length = 782 Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 4/151 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + D E + +R + ++QL+ G +IR+ K L +L D+ K+ Sbjct: 78 LGFDCEWVSNQGQRRPVALLQLASHRGLCALIRLCMINKLPQELYDLLNDDNIIKVGVSP 137 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDW 140 D +L + ++V + + R G+ E+LG+ + K + SDW Sbjct: 138 YEDARLLREDYKLKVESTLDLRFMAE--RAGLEPFGIARLANEVLGLTLDKHWKIRCSDW 195 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 A DLSD Q++YAASD L +F KL Sbjct: 196 EAPDLSDRQIKYAASDAHVAVELFKKFAYKL 226 >gi|302541899|ref|ZP_07294241.1| putative ribonuclease D [Streptomyces hygroscopicus ATCC 53653] gi|302459517|gb|EFL22610.1| putative ribonuclease D [Streptomyces himastatinicus ATCC 53653] Length = 425 Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 69/160 (43%), Gaps = 10/160 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LVDEKREKIFH 80 +AVD E R +VQL G GT I + P+L G+ E + H Sbjct: 62 VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV-----GCPDLSGLGAAVADAEWVLH 116 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L G+ +F T++A RL + GL ++ +LG + K + DW Sbjct: 117 AATQDLPCL-RDIGMVPDRLFDTELAGRLA--GFARVGLGAMVENILGYALEKGHSAVDW 173 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 S L + L YAA DV L LR E+L R G+ + A Sbjct: 174 STRPLPEPWLHYAALDVELLVDLRDALEEELTRQGKLEWA 213 >gi|220912416|ref|YP_002487725.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6] gi|219859294|gb|ACL39636.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6] Length = 443 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A+RL + GL +++LLG ++K Sbjct: 118 EWILHAATQDLPCL-SELGMWPDKLFDTELAARLA--GLPRVGLAAVIEQLLGFGLAKEH 174 Query: 136 QSSDWSADDLSDEQLQYAASDV 157 ++DWS L + L+YAA DV Sbjct: 175 SAADWSTRPLPEPWLRYAALDV 196 >gi|46579495|ref|YP_010303.1| 3' exoribonuclease family protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602955|ref|YP_967355.1| 3'-5' exonuclease [Desulfovibrio vulgaris DP4] gi|46448909|gb|AAS95562.1| 3'- 5' exonuclease domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563184|gb|ABM28928.1| 3'-5' exonuclease [Desulfovibrio vulgaris DP4] Length = 202 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 HGL++ LGI ISK Q S+WS +L +Q+ YAA+D Sbjct: 144 HGLRNLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATD 183 >gi|302554895|ref|ZP_07307237.1| ribonuclease D [Streptomyces viridochromogenes DSM 40736] gi|302472513|gb|EFL35606.1| ribonuclease D [Streptomyces viridochromogenes DSM 40736] Length = 474 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L V R +F T++A RL + GL ++ +LG + K Sbjct: 116 EWVLHAATQDLPCLREIGMVPTR-LFDTELAGRLA--GFPRVGLGAMVEGVLGFVLEKGH 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L+YAA DV L LR ++L R G+ D A Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWA 217 >gi|308234712|ref|ZP_07665449.1| ribonuclease D [Gardnerella vaginalis ATCC 14018] gi|311114520|ref|YP_003985741.1| hypothetical protein HMPREF0421_20636 [Gardnerella vaginalis ATCC 14019] gi|310946014|gb|ADP38718.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019] Length = 481 Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F+ G+R R +F T+IA++L + GL + LG+ ++K ++DWS L + Sbjct: 130 FFDIGLRPRALFDTEIAAKLLGR--KRFGLSSVTEYYLGLTLAKEHSAADWSYRPLPRDW 187 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGR 176 YAA DV L L + +L++ G+ Sbjct: 188 RNYAALDVELLIELEEVMSGELKKQGK 214 >gi|225455316|ref|XP_002271858.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 510 Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/33 (60%), Positives = 25/33 (75%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 KELLGI++SK Q SDWS L++EQ YAA+D Sbjct: 160 KELLGISLSKELQCSDWSHRPLTEEQKTYAATD 192 >gi|328885873|emb|CCA59112.1| Ribonuclease D [Streptomyces venezuelae ATCC 10712] Length = 427 Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 115 EWILHAATQDLPCL-RDIGMLPTSLFDTELAGRLA--GFPRVGLGAMVESVLGYALEKGH 171 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 172 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 216 >gi|260772433|ref|ZP_05881349.1| ribonuclease D [Vibrio metschnikovii CIP 69.14] gi|260611572|gb|EEX36775.1| ribonuclease D [Vibrio metschnikovii CIP 69.14] Length = 267 Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 35/54 (64%) Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +LL + + K++ +DW A LS++QL+YAA+DV +L + Q +K+ + G D Sbjct: 19 DLLNVELDKSESRTDWLARPLSEKQLEYAAADVFYLLPMFEQLLDKVTQAGWWD 72 >gi|23465521|ref|NP_696124.1| hypothetical protein BL0948 [Bifidobacterium longum NCC2705] gi|23326181|gb|AAN24760.1| narrowly conserved hypothetical protein [Bifidobacterium longum NCC2705] Length = 433 Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G++ + +F T+IA+RL + + GL + LGI ++K ++DWS L + Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 YAA DV L L L+ G+ + A Sbjct: 168 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 199 >gi|311233310|gb|ADP86164.1| 3'-5' exonuclease [Desulfovibrio vulgaris RCH1] Length = 201 Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 HGL++ LGI ISK Q S+WS +L +Q+ YAA+D Sbjct: 143 HGLRNLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATD 182 >gi|300781041|ref|ZP_07090895.1| ribonuclease D [Corynebacterium genitalium ATCC 33030] gi|300532748|gb|EFK53809.1| ribonuclease D [Corynebacterium genitalium ATCC 33030] Length = 394 Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 69/172 (40%), Gaps = 14/172 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAPNLVGMLVDEKREK 77 AVDTE DR ++Q+ G GT + +R AP + G + Sbjct: 26 FAVDTERASAYRYDDRAFLIQIHRRGAGTFLFQPEGLREELTSALAPAVNG------EDW 79 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ L G+ +F T +A R+ + L + E G+ + K Sbjct: 80 IIHAAPEDLPSL-AELGLHPGTLFDTALAGRIAGF--EKPNLAAMVAEFCGVELEKGHGR 136 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 DWS L E L YAA DV++L L E L LG+ D A ++D Sbjct: 137 EDWSLPTLPREWLDYAALDVIYLPDLAEAQAELLGGLGKLDYAEQEFAHIVD 188 >gi|225352286|ref|ZP_03743309.1| hypothetical protein BIFPSEUDO_03902 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157533|gb|EEG70872.1| hypothetical protein BIFPSEUDO_03902 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 243 Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G++ + +F T+IA+RL + GL + LG+ ++K ++DWS L + Sbjct: 106 FNDLGLKPQRLFDTEIAARLLGM--KRFGLAAVTEHYLGLTLAKEHSAADWSYRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 YAA DV L L +LQ+ G+ + A ++ + Sbjct: 164 RNYAALDVELLIELETTMRAELQKQGKIEWAEEEFDYAL 202 >gi|302143936|emb|CBI23041.3| unnamed protein product [Vitis vinifera] Length = 526 Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust. Identities = 20/33 (60%), Positives = 25/33 (75%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 KELLGI++SK Q SDWS L++EQ YAA+D Sbjct: 160 KELLGISLSKELQCSDWSHRPLTEEQKTYAATD 192 >gi|227546007|ref|ZP_03976056.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621937|ref|ZP_04664968.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|322688886|ref|YP_004208620.1| exonuclease [Bifidobacterium longum subsp. infantis 157F] gi|322690861|ref|YP_004220431.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|227213641|gb|EEI81490.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515128|gb|EEQ54995.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|320455717|dbj|BAJ66339.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|320460222|dbj|BAJ70842.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F] Length = 433 Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G++ + +F T+IA+RL + + GL + LGI ++K ++DWS L + Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 YAA DV L L L+ G+ + A Sbjct: 168 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 199 >gi|46190415|ref|ZP_00206459.1| COG0349: Ribonuclease D [Bifidobacterium longum DJO10A] gi|189439553|ref|YP_001954634.1| ribonuclease D [Bifidobacterium longum DJO10A] gi|189427988|gb|ACD98136.1| Ribonuclease D [Bifidobacterium longum DJO10A] Length = 433 Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G++ + +F T+IA+RL + + GL + LGI ++K ++DWS L + Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 YAA DV L L L+ G+ + A Sbjct: 168 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 199 >gi|317482293|ref|ZP_07941314.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA] gi|316916309|gb|EFV37710.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA] Length = 433 Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G++ + +F T+IA+RL + + GL + LGI ++K ++DWS L + Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 YAA DV L L L+ G+ + A Sbjct: 168 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 199 >gi|119962304|ref|YP_947556.1| ribonuclease D [Arthrobacter aurescens TC1] gi|119949163|gb|ABM08074.1| putative ribonuclease D [Arthrobacter aurescens TC1] Length = 453 Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A+RL + GL +++LLG ++K Sbjct: 118 EWILHAASQDLPCL-SELGMWPDKLFDTELAARLA--GLPRVGLAAVIEQLLGFGLAKEH 174 Query: 136 QSSDWSADDLSDEQLQYAASDV 157 ++DWS L + L+YAA DV Sbjct: 175 SAADWSTRPLPEPWLRYAALDV 196 >gi|71278230|ref|YP_270192.1| ribonuclease D [Colwellia psychrerythraea 34H] gi|71143970|gb|AAZ24443.1| ribonuclease D [Colwellia psychrerythraea 34H] Length = 379 Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 11/142 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + +L ++Q+ G+ + +I A AP +L +E K+ H Sbjct: 25 LAIDTEFVRTRTLYAKLGLLQVCDGE-QLALIDPLAIDDLAP-FWALLTNENITKVLHAC 82 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK----DNLKELLGINISKAQQSS 138 D+ V F T G +PV I S++ ++ HGL +K I + K++ + Sbjct: 83 SEDLEV-FLTAG-NCKPV--NLIDSQIMMSFLG-HGLSLGYAAMVKHFTDIELDKSESRT 137 Query: 139 DWSADDLSDEQLQYAASDVVHL 160 DW+ L+++QL YA++DV HL Sbjct: 138 DWTKRPLTEKQLDYASADVDHL 159 >gi|312132962|ref|YP_004000301.1| rnd [Bifidobacterium longum subsp. longum BBMN68] gi|311773944|gb|ADQ03432.1| Rnd [Bifidobacterium longum subsp. longum BBMN68] Length = 408 Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G++ + +F T+IA+RL + + GL + LGI ++K ++DWS L + Sbjct: 85 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 142 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 YAA DV L L L+ G+ + A Sbjct: 143 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 174 >gi|289427165|ref|ZP_06428881.1| 3'-5' exonuclease [Propionibacterium acnes J165] gi|289159634|gb|EFD07822.1| 3'-5' exonuclease [Propionibacterium acnes J165] Length = 395 Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76 IA+DTE R C++QL G GT VD + + A G K A L G + Sbjct: 21 IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 74 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 75 WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 131 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 132 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 175 >gi|328754581|gb|EGF68197.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA2] Length = 412 Score = 42.4 bits (98), Expect = 0.042, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76 IA+DTE R C++QL G GT VD + + A G K A L G + Sbjct: 38 IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 92 WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 >gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens] Length = 679 Score = 42.4 bits (98), Expect = 0.042, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 458 >gi|313827523|gb|EFS65237.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA2] gi|315108646|gb|EFT80622.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA2] Length = 412 Score = 42.4 bits (98), Expect = 0.042, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76 IA+DTE R C++QL G GT VD + + A G K A L G + Sbjct: 38 IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 92 WILHAATQDLPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 >gi|289425030|ref|ZP_06426807.1| 3'-5' exonuclease [Propionibacterium acnes SK187] gi|289154008|gb|EFD02696.1| 3'-5' exonuclease [Propionibacterium acnes SK187] gi|313792108|gb|EFS40209.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA1] gi|313838766|gb|EFS76480.1| 3'-5' exonuclease [Propionibacterium acnes HL086PA1] gi|314962767|gb|EFT06867.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA1] gi|315077982|gb|EFT50033.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA2] gi|327453174|gb|EGE99828.1| 3'-5' exonuclease [Propionibacterium acnes HL092PA1] Length = 412 Score = 42.4 bits (98), Expect = 0.042, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76 IA+DTE R C++QL G GT VD + + A G K A L G + Sbjct: 38 IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 92 WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 >gi|221485002|gb|EEE23292.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 672 Score = 42.4 bits (98), Expect = 0.042, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 36 RDRLCIVQLSPGDGTVDII-RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94 R L ++QL+ TV I +++A P L +L+ K+ ++ L FG Sbjct: 196 RPPLALIQLA--SPTVACIWQLSALGGLPPGLTALLLRADVVKVTQGATGEVEALQREFG 253 Query: 95 VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 V R C A+ TN L+ L + K+ Q S WS D LS EQ YAA Sbjct: 254 VSPRNFLCLHAAAIALGCATNSRSLQALCGLFLERFLDKSLQLSTWSRDALSPEQCMYAA 313 Query: 155 SDV 157 +D Sbjct: 314 TDA 316 >gi|323453102|gb|EGB08974.1| hypothetical protein AURANDRAFT_63530 [Aureococcus anophagefferens] Length = 549 Score = 42.4 bits (98), Expect = 0.043, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 16/166 (9%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVD-IIRIAAGQKNAPNLVGMLVDEKREKI 78 VD VD E C+VQ+S D VD ++ A + L D K+ Sbjct: 226 VDVFGVDLEAHAEHSYESIACLVQISTAD--VDYVVDALALRFELRALAPAFADPNIRKV 283 Query: 79 FHYGR-FDIAVLFYTFGVRVRPVFCTKIASR-----------LTRTYTNQHGLKDNLKEL 126 FH + DI L FG+ V VF T+ A+R L Y + + ++ Sbjct: 284 FHACQGVDIPRLQRDFGIFVVNVFDTQEAARCAARVLGAPLGLVALYASAGVISTARRDE 343 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L ++ +A Q+ DW + LS QL+YA D HL L +L+ Sbjct: 344 LE-SLKRAYQNCDWRSRPLSPAQLEYAVCDARHLVDLEAYLNRELR 388 >gi|314918304|gb|EFS82135.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA1] Length = 412 Score = 42.4 bits (98), Expect = 0.043, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76 IA+DTE R C++QL G GT VD + + A G K A L G + Sbjct: 38 IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 92 WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 >gi|50842545|ref|YP_055772.1| ribonuclease D [Propionibacterium acnes KPA171202] gi|295130624|ref|YP_003581287.1| 3'-5' exonuclease [Propionibacterium acnes SK137] gi|50840147|gb|AAT82814.1| ribonuclease D [Propionibacterium acnes KPA171202] gi|291375251|gb|ADD99105.1| 3'-5' exonuclease [Propionibacterium acnes SK137] gi|313764422|gb|EFS35786.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA1] gi|313772196|gb|EFS38162.1| 3'-5' exonuclease [Propionibacterium acnes HL074PA1] gi|313807552|gb|EFS46039.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA2] gi|313810061|gb|EFS47782.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA1] gi|313815960|gb|EFS53674.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA1] gi|313818593|gb|EFS56307.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA2] gi|313820361|gb|EFS58075.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA1] gi|313822834|gb|EFS60548.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA2] gi|313825235|gb|EFS62949.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA1] gi|313830390|gb|EFS68104.1| 3'-5' exonuclease [Propionibacterium acnes HL007PA1] gi|313833761|gb|EFS71475.1| 3'-5' exonuclease [Propionibacterium acnes HL056PA1] gi|314915414|gb|EFS79245.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA4] gi|314920115|gb|EFS83946.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA3] gi|314925249|gb|EFS89080.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA3] gi|314931637|gb|EFS95468.1| 3'-5' exonuclease [Propionibacterium acnes HL067PA1] gi|314955692|gb|EFT00094.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA1] gi|314958090|gb|EFT02193.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA1] gi|314959968|gb|EFT04070.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA2] gi|314967866|gb|EFT11965.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA1] gi|314973393|gb|EFT17489.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA1] gi|314976071|gb|EFT20166.1| 3'-5' exonuclease [Propionibacterium acnes HL045PA1] gi|314978539|gb|EFT22633.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA2] gi|314983908|gb|EFT28000.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA1] gi|314989898|gb|EFT33989.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA3] gi|315084278|gb|EFT56254.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA2] gi|315085621|gb|EFT57597.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA3] gi|315088327|gb|EFT60303.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA1] gi|315095938|gb|EFT67914.1| 3'-5' exonuclease [Propionibacterium acnes HL038PA1] gi|315098569|gb|EFT70545.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA2] gi|315101430|gb|EFT73406.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA1] gi|315105619|gb|EFT77595.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA1] gi|327326219|gb|EGE68009.1| putative ribonuclease D [Propionibacterium acnes HL096PA2] gi|327330288|gb|EGE72037.1| putative ribonuclease D [Propionibacterium acnes HL097PA1] gi|327331905|gb|EGE73642.1| putative ribonuclease D [Propionibacterium acnes HL096PA3] gi|327443108|gb|EGE89762.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA2] gi|327445890|gb|EGE92544.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA2] gi|327448129|gb|EGE94783.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA1] gi|327450750|gb|EGE97404.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA3] gi|327453907|gb|EGF00562.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA2] gi|328753437|gb|EGF67053.1| 3'-5' exonuclease [Propionibacterium acnes HL020PA1] gi|328754168|gb|EGF67784.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA1] gi|328760820|gb|EGF74386.1| putative ribonuclease D [Propionibacterium acnes HL099PA1] gi|332675465|gb|AEE72281.1| ribonuclease D [Propionibacterium acnes 266] Length = 412 Score = 42.4 bits (98), Expect = 0.044, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76 IA+DTE R C++QL G GT VD + + A G K A L G + Sbjct: 38 IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 92 WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 >gi|291517068|emb|CBK70684.1| Ribonuclease D [Bifidobacterium longum subsp. longum F8] Length = 398 Score = 42.4 bits (98), Expect = 0.044, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G++ + +F T+IA+RL + + GL + LGI ++K ++DWS L + Sbjct: 75 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 132 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 YAA DV L L L+ G+ + A Sbjct: 133 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 164 >gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 964 Score = 42.4 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 5/121 (4%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLV---GMLVDEKREKIFHYGRFDIAVLFYTFGV 95 +C +Q+S + +D + A +N N + + +++ + KI H DI L F + Sbjct: 793 VCTIQISTVN--MDFMIDAMALRNQINQLLNKSLFLNKTKIKILHGCENDIKWLKNDFDI 850 Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155 + +F T A + + + LK+ ++ LG+ + K+ Q SDW L + YA Sbjct: 851 DIVNLFDTMFAEMIIKNKQQSYSLKNLSQDYLGVELDKSYQISDWRIRPLPTPMMNYARV 910 Query: 156 D 156 D Sbjct: 911 D 911 >gi|298252714|ref|ZP_06976508.1| ribonuclease D [Gardnerella vaginalis 5-1] gi|297533078|gb|EFH71962.1| ribonuclease D [Gardnerella vaginalis 5-1] Length = 476 Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F+ G+R R +F T+IA++L + GL + LG+ ++K ++DWS L + Sbjct: 106 FFDIGLRPRALFDTEIAAKLLGR--KRFGLSSVTEYYLGLTLAKEHSAADWSYRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 YAA DV L L +L++ G+ A L+ + Sbjct: 164 RNYAALDVELLIELEEVMRVELKKQGKLSWAEEEFKHLLSKG 205 >gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis] Length = 673 Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWER 458 >gi|261855126|ref|YP_003262409.1| ribonuclease D [Halothiobacillus neapolitanus c2] gi|261835595|gb|ACX95362.1| ribonuclease D [Halothiobacillus neapolitanus c2] Length = 374 Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 +DTE + +LC+VQ++ D I +A AP L L +FH Sbjct: 37 IDTEFMRESTYFPQLCLVQIATPDAIWLIDPLAV--PLAP-LWHELNRTSSPLVFHAAEQ 93 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 D+ +++ G + + ++IA+ Q G + + LL + + K+Q ++W+ Sbjct: 94 DLELIYLDSGALPQTLRDSQIAAAFL-GLGEQIGYANLVNRLLHVELDKSQSRTNWAQRP 152 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 L+ EQ YAA DV L ++ E+L R C L D Sbjct: 153 LTAEQQHYAADDVRFLRSMYPLLREQLATKNRLAWFDEECAALSD 197 >gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis] gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis] Length = 552 Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH D+ L FG+ V +F T ASR+ + L LK+ G+ K Q Sbjct: 325 KVFHGADMDVGWLQRDFGIYVVNMFDTGQASRVLAL--ERFSLAFLLKKFCGVTADKQYQ 382 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +DW L +E ++YA D +L + + +L R G + Sbjct: 383 LADWRIRPLPEEMIRYAREDTHYLLYIHDRLRNELIRTGNEN 424 >gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus] Length = 705 Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 333 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 390 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 391 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 421 >gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus] Length = 497 Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444 >gi|270283861|ref|ZP_06193723.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093] gi|270277581|gb|EFA23435.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093] Length = 262 Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 2/100 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G+R +F T++A+RL + GL + LG+ ++K ++DWS L + Sbjct: 106 FADLGIRPHALFDTELAARLLGL--ERFGLAYVTERYLGLTLAKEHSAADWSHRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 YAA DV L LR L+ G+ + A + ++ Sbjct: 164 RNYAALDVELLIELREAMMRDLKAAGKEEWARQEFAYALE 203 >gi|86740037|ref|YP_480437.1| 3'-5' exonuclease [Frankia sp. CcI3] gi|86566899|gb|ABD10708.1| 3'-5' exonuclease [Frankia sp. CcI3] Length = 427 Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R +F T++A RL + GL ++ +LG + K Sbjct: 96 EWVLHAASQDLPCL-SELGLRPSLLFDTELAGRLL--GYERVGLGIMVERVLGYGLEKGH 152 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALR 164 ++DWS L + L+YAA DV L LR Sbjct: 153 SAADWSTRPLPEPWLRYAALDVELLVELR 181 >gi|290956585|ref|YP_003487767.1| exonuclease [Streptomyces scabiei 87.22] gi|260646111|emb|CBG69204.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 397 Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 10/160 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LVDEKREKIFH 80 +AVD E R +VQL G GT I +A P+L G+ E + H Sbjct: 32 VAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC-----PDLSGLGEALSGVEWVLH 86 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L V R +F T++A RL + GL ++ +LG + K + DW Sbjct: 87 AATQDLPCLREIDMVPTR-IFDTELAGRLA--GFPRVGLGAMVEGVLGYVLEKGHSAVDW 143 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 S L + L+YAA DV L LR ++L R G+ + A Sbjct: 144 STRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 183 >gi|257056403|ref|YP_003134235.1| ribonuclease D [Saccharomonospora viridis DSM 43017] gi|256586275|gb|ACU97408.1| ribonuclease D [Saccharomonospora viridis DSM 43017] Length = 413 Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+ +F T++A RL + L ++ LLG + K Sbjct: 101 EWVLHAASQDLPCLA-ELGLHPPSLFDTELAGRLA--GYQRVALGTLVESLLGYQLEKGH 157 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L + L YAA DV L LR + E+L G+ + A Sbjct: 158 SAADWSRRPLPLDWLNYAALDVELLLPLREKLEEELAASGKLEWA 202 >gi|187466071|emb|CAQ51625.1| exosome component 10 [Mus musculus] Length = 727 Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 355 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 412 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 413 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 443 >gi|123226358|emb|CAM23946.1| exosome component 10 [Mus musculus] Length = 728 Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444 >gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo] gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis] Length = 879 Score = 42.0 bits (97), Expect = 0.054, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+D E R +C+VQ++ D +D I L + D + K+ H Sbjct: 338 VAIDVEHHSTQSYRGFVCLVQITGADDDWVIDPFSIF---DEMWRLNDVTTDPRILKVMH 394 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L FGV V +F T A+ + + H L ++ LGI++ K+ Q +DW Sbjct: 395 GAESDILWLQRDFGVYVVNLFDTLKAADVL-CLSCGHSLSSLVRHFLGIHLDKSYQLADW 453 Query: 141 SADDLSDEQLQYAASDVVHL 160 + + L YA +D +L Sbjct: 454 RIRPIPRDMLTYATADTHYL 473 >gi|78357431|ref|YP_388880.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219836|gb|ABB39185.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 201 Score = 42.0 bits (97), Expect = 0.057, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 27/40 (67%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 HGL++ LL ISKA Q S+WS +LS +Q+ YAA+D Sbjct: 143 HGLRNLAANLLEFRISKAAQCSNWSNLELSRQQISYAATD 182 >gi|146329754|ref|YP_001210006.1| ribonuclease D [Dichelobacter nodosus VCS1703A] gi|146233224|gb|ABQ14202.1| ribonuclease D [Dichelobacter nodosus VCS1703A] Length = 355 Score = 42.0 bits (97), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDV-VHLHALRLQFTEKLQRLGRSDLAT 181 ++ LGI++ K++ SDW A L++EQ QYAA+DV + L A L LQRL R Sbjct: 120 VQHYLGIDLDKSETRSDWLARPLTNEQCQYAANDVGLLLQAYPL-LCADLQRLNRMHWWQ 178 Query: 182 SCCNFLM 188 C L+ Sbjct: 179 EECQNLL 185 >gi|790213|gb|AAB65809.1| ORFQ [Dichelobacter nodosus] Length = 289 Score = 42.0 bits (97), Expect = 0.058, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 35/66 (53%) Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ LGI++ K++ SDW A L++EQ QYAA+DV L LQRL R Sbjct: 54 VQHYLGIDLDKSETRSDWLARPLTNEQCQYAANDVGLLLQAYPLLCADLQRLNRMHWWQE 113 Query: 183 CCNFLM 188 C L+ Sbjct: 114 ECQNLL 119 >gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii] gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii] Length = 512 Score = 42.0 bits (97), Expect = 0.058, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 2/143 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R IAVD E + +C++Q+S + + P L + + K Sbjct: 241 RASSEIAVDLENHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVLRSVFANPSIRK 300 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H DI L FG+ V +F T A+R+ R + GL L+ + K Q Sbjct: 301 VIHGSDRDILWLQRDFGIYVCNLFDTGQAARVLRM--ERFGLAFLLQTFCEVTPDKRYQL 358 Query: 138 SDWSADDLSDEQLQYAASDVVHL 160 +DW LS E L+YA D +L Sbjct: 359 ADWRLRPLSAEMLKYAREDTHYL 381 >gi|219870644|ref|YP_002475019.1| ribonuclease D [Haemophilus parasuis SH0165] gi|219690848|gb|ACL32071.1| ribonuclease D [Haemophilus parasuis SH0165] Length = 375 Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 16/175 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IA+DTE + +L ++QL G +D + I + +L +E K+ H Sbjct: 29 IALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLSIT----DFSPFTALLANENVLKVLH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINISKAQQ 136 D+ V + F +P+ T++ + G+ +L L + + K Sbjct: 85 ACGEDLEVFQHYFKQLPQPMLDTQVMAGFVGL-----GISIGFAKLALHYLEVELDKGAS 139 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-GRSDLATSCCNFLMDR 190 +DW + LS+ QLQYA +DV +L + + E L + ++ + C L R Sbjct: 140 RTDWLSHPLSEIQLQYACADVWYLLPIYHKLAEDLAKTPWQTAVVEECATLLAKR 194 >gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] Length = 662 Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 41/214 (19%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +D ET GL P + ++Q++ + V +I G N L + K K+ H Sbjct: 69 VGLDIETTGLDPHTSEISLIQIAAPNRPVILIEFR-GITNKETLRRFIEHPKIPKVGHNL 127 Query: 83 RFDIAVLFYTFGVR------VRPVFCTKIASR-------------------LTRTYTNQH 117 F+I L G+ + + +++ + LTR+ N+ Sbjct: 128 AFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPIPDLTRSIKNKK 187 Query: 118 GLKDNLKE--------------LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 LK L LG ++ K+ Q SDW L+ EQLQYAA+D + L Sbjct: 188 KLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDW-GKPLTQEQLQYAANDAAVVLPL 246 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 R K+ +D L A++ L+G Sbjct: 247 REALRNKIIDNQLTDAIQVELGALARVAQMGLMG 280 >gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5] gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5] Length = 915 Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 12/118 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------LVG 68 R+ A+DTET GL PR +L + ++ G + + G ++ P L Sbjct: 337 RHAGRFAIDTETTGLNPRHAKLVGISVATAPGRAAYVPL--GHEDGPQLPRPLALERLAP 394 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D KIFH +FD+ VL PV T + S + HG+ D L L Sbjct: 395 VLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGM-DELSAL 451 >gi|303272145|ref|XP_003055434.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463408|gb|EEH60686.1| predicted protein [Micromonas pusilla CCMP1545] Length = 590 Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 26/43 (60%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 GL K LG +SKA+Q SDWS L+ QL YAA+D +L Sbjct: 238 GLATLTKFTLGATLSKAEQCSDWSRRPLTAAQLSYAAADAFYL 280 >gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL Brener] gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi] Length = 768 Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 25/172 (14%) Query: 5 RVHEGDIP-AECAARYVDA----------------IAVDTETLGLMPRRDRLCIVQLS-- 45 RV +P A+C R+VDA IAVD E + C++Q+S Sbjct: 255 RVETPYLPLAQCPLRFVDATVDLEDVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTR 314 Query: 46 PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105 D +D +++ + L + ++ K+ H R DI L FG+ + F T I Sbjct: 315 SEDILIDCLKLRSSMHL---LAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGI 371 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 A +T HGL + + + K Q++DW + E YA D Sbjct: 372 A---LQTLHMPHGLAFAVDHFCQVKLDKKYQTADWRIRPIPAEMATYARQDT 420 >gi|226954026|ref|ZP_03824490.1| ribonuclease D, processes tRNA [Acinetobacter sp. ATCC 27244] gi|226835237|gb|EEH67620.1| ribonuclease D, processes tRNA [Acinetobacter sp. ATCC 27244] Length = 286 Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 36/79 (45%) Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q ++ LK L I I K Q SDW A L+ +Q+ YAA+DV++L L LQ G Sbjct: 19 QVSYQNALKTYLDIEIEKDQTRSDWLARPLTPQQISYAANDVLYLPRLAEALKRDLQSKG 78 Query: 176 RSDLATSCCNFLMDRAELD 194 C L +D Sbjct: 79 IYHYVLEDCQNLTKEIGID 97 >gi|313674143|ref|YP_004052139.1| 3'-5' exonuclease [Marivirga tractuosa DSM 4126] gi|312940841|gb|ADR20031.1| 3'-5' exonuclease [Marivirga tractuosa DSM 4126] Length = 194 Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155 + RP I S + Q G K+ L ISKAQQ+S+W +L+ Q+ YAA+ Sbjct: 117 KFRPEGFEDIGSIARQNGMLQSGAKNLTAIFLNKRISKAQQTSNWEKSELTQAQIDYAAT 176 Query: 156 DVVHLHALRLQFTEKLQRLG 175 D L L+ E +R+G Sbjct: 177 DAY----LGLKVYEVFERIG 192 >gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens] Length = 529 Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 458 >gi|159464515|ref|XP_001690487.1| hypothetical protein CHLREDRAFT_169205 [Chlamydomonas reinhardtii] gi|158279987|gb|EDP05746.1| predicted protein [Chlamydomonas reinhardtii] Length = 185 Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust. Identities = 20/36 (55%), Positives = 25/36 (69%) Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 E+LG + K QQ SDW+A LS+ QL YAA+DV L Sbjct: 34 EVLGKPLDKEQQRSDWAARPLSESQLAYAAADVACL 69 >gi|114553924|ref|XP_001136359.1| PREDICTED: exosome component 10 isoform 2 [Pan troglodytes] Length = 811 Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482 >gi|227488764|ref|ZP_03919080.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51867] gi|227542239|ref|ZP_03972288.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51866] gi|227091186|gb|EEI26498.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51867] gi|227182068|gb|EEI63040.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51866] Length = 386 Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 8/180 (4%) Query: 13 AECAARYVDA--IAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGM 69 A+CAA IA+DTE DR ++QL G GT +I A + + P ++ Sbjct: 21 ADCAATLSPGAPIAIDTERASGYTYDDRAYLIQLRQEGIGTF-LIDAEALRDDLPPVLAP 79 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 V+ + H DI L G+ +F T++A R ++ L +LGI Sbjct: 80 AVNAC-PWVLHAAVSDIPCL-ADVGMTAPTLFDTEVAGRFLGF--DKVNLAAMTNRILGI 135 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ K + +WS + L YAA DV L L T L+R G+ A + ++D Sbjct: 136 DLKKGHAAENWSKRPIPRSWLIYAALDVELLIELADTLTALLEREGKLAWAEAEFQHIID 195 >gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus] gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus] gi|296479174|gb|DAA21289.1| exosome component 10 [Bos taurus] Length = 702 Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCSV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWER 458 >gi|114553922|ref|XP_001136272.1| PREDICTED: exosome component 10 isoform 1 [Pan troglodytes] Length = 768 Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482 >gi|296453936|ref|YP_003661079.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301] gi|296183367|gb|ADH00249.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301] Length = 433 Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G++ + +F T+IA+RL + + GL + LGI ++K ++DWS L + Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 YAA DV L L L+ G+ + A Sbjct: 168 RNYAALDVEVLIELETLMRRDLKAAGKDEWAA 199 >gi|72387778|ref|XP_844313.1| ribosomal RNA processing protein 6 [Trypanosoma brucei TREU927] gi|62359465|gb|AAX79902.1| ribosomal RNA processing protein 6 [Trypanosoma brucei] gi|70800846|gb|AAZ10754.1| ribosomal RNA processing protein 6 [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 736 Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E + C++Q+S D VD +++ A N + + + K+FH Sbjct: 268 IAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRA---NMYLMAPVFLQPNIVKVFH 324 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ L FG+ + +F T IA + H L + + ++K Q++DW Sbjct: 325 GAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSLAFAVDHFCQVKLNKKYQTADW 381 Query: 141 SADDLSDEQLQYAASD 156 + E + YA D Sbjct: 382 RVRPIPAEMVSYAQQD 397 >gi|227549136|ref|ZP_03979185.1| ribonuclease [Corynebacterium lipophiloflavum DSM 44291] gi|227078777|gb|EEI16740.1| ribonuclease [Corynebacterium lipophiloflavum DSM 44291] Length = 390 Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 4/157 (2%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 A+DTE DR +VQ++ D + G ++A V + I H Sbjct: 27 AIDTERASSFRYDDRAFLVQVNRRDAGT-FLFAPEGHRDALREALAPVIGGTDWILHAAG 85 Query: 84 FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 D+ L G+ +F T+IA+RL + L + E G+ + DWS Sbjct: 86 EDLPSL-AELGLHPGTLFDTEIAARLA--GFERPNLAAMVGEFTGVTLDNGYGREDWSTI 142 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L + YAA DVV+L AL TE L G+ + A Sbjct: 143 PLPLQWQAYAADDVVYLSALAEGLTEVLDAAGKLEAA 179 >gi|300741364|ref|ZP_07071385.1| putative ribonuclease D [Rothia dentocariosa M567] gi|300380549|gb|EFJ77111.1| putative ribonuclease D [Rothia dentocariosa M567] Length = 424 Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D L G+R R +F T++ +RL + L ++ELLG + K Sbjct: 110 EWIIHAATQDFPSLDL-LGMRPRLLFDTELGARLA--GLERVNLGAVVEELLGYKLEKKH 166 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 DWS L + L YA DV L LR E L+ G+ + A +L Sbjct: 167 SQEDWSQRPLPESWLNYACLDVDVLADLRDALEEVLEDQGKLEYARQEFAYL 218 >gi|311113446|ref|YP_003984668.1| ribonuclease D [Rothia dentocariosa ATCC 17931] gi|310944940|gb|ADP41234.1| ribonuclease D [Rothia dentocariosa ATCC 17931] Length = 424 Score = 41.6 bits (96), Expect = 0.072, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D L G+R R +F T++ +RL + L ++ELLG + K Sbjct: 110 EWIIHAATQDFPSLDL-LGMRPRLLFDTELGARLA--GLERVNLGAVVEELLGYKLEKKH 166 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 DWS L + L YA DV L LR E L+ G+ + A +L Sbjct: 167 SQEDWSQRPLPESWLNYACLDVDVLADLRDALEEVLEDQGKLEYARQEFAYL 218 >gi|302537554|ref|ZP_07289896.1| ribonuclease D [Streptomyces sp. C] gi|302446449|gb|EFL18265.1| ribonuclease D [Streptomyces sp. C] Length = 428 Score = 41.6 bits (96), Expect = 0.072, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 116 EWILHAATQDLPCL-REIGMVPTSLFDTELAGRLA--GFPRVGLGAMVEGVLGYALEKGH 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 217 >gi|213692580|ref|YP_002323166.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524041|gb|ACJ52788.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458732|dbj|BAJ69353.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 433 Score = 41.6 bits (96), Expect = 0.073, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G++ + +F T+IA+RL + + GL + LGI ++K ++DWS L + Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 YAA DV L L L+ G+ + A Sbjct: 168 RNYAALDVEVLIELETLMRRDLKAAGKDEWAA 199 >gi|297561776|ref|YP_003680750.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846224|gb|ADH68244.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 421 Score = 41.6 bits (96), Expect = 0.074, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L +R R +F T++A RL + GL ++ LL + ++K Sbjct: 107 EVVLHAAHQDLPCL-SEINLRPRSLFDTELAGRLL--GYQRVGLGFMVERLLHLRLAKEH 163 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L ++ L+YAA DV L LR +L+ G+ + A Sbjct: 164 SAVDWSQRPLPEDWLRYAALDVEILIDLRDSLEVELEETGKLEWA 208 >gi|163841118|ref|YP_001625523.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209] gi|162954594|gb|ABY24109.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209] Length = 480 Score = 41.6 bits (96), Expect = 0.074, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A+R+ + GL +++LLG ++K Sbjct: 153 EWILHAASQDLPCL-SELGMWPSALFDTELAARIA--GLPKVGLAAVVEQLLGFGLAKEH 209 Query: 136 QSSDWSADDLSDEQLQYAASDV 157 ++DWS L + L+YAA DV Sbjct: 210 SAADWSTRPLPEPWLRYAALDV 231 >gi|261327471|emb|CBH10446.1| ribosomal RNA processing protein 6, putative [Trypanosoma brucei gambiense DAL972] Length = 738 Score = 41.6 bits (96), Expect = 0.075, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E + C++Q+S D VD +++ A N + + + K+FH Sbjct: 268 IAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRA---NMYLMAPVFLQPNIVKVFH 324 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ L FG+ + +F T IA + H L + + ++K Q++DW Sbjct: 325 GAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSLAFAVDHFCQVKLNKKYQTADW 381 Query: 141 SADDLSDEQLQYAASD 156 + E + YA D Sbjct: 382 RVRPIPAEMVSYAQQD 397 >gi|254566215|ref|XP_002490218.1| Exonuclease component of the nuclear exosome [Pichia pastoris GS115] gi|238030014|emb|CAY67937.1| Exonuclease component of the nuclear exosome [Pichia pastoris GS115] gi|328350615|emb|CCA37015.1| exosome complex exonuclease RRP6 [Pichia pastoris CBS 7435] Length = 717 Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 66/158 (41%), Gaps = 7/158 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 D IAVD E L +C++Q+S D VD +++ K P L + D K+ Sbjct: 232 DVIAVDLEHHDLRTYYGLVCLMQISTRNQDYIVDTLKLRF--KLQP-LNKVFTDPSIVKV 288 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH DI L G+ V +F T AS+L +H L L+ SK Q + Sbjct: 289 FHGAFMDIIWLQRDLGLYVVSLFDTFHASKLLGF--PKHSLAYLLETYAKFKTSKKYQLA 346 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 DW L+ L YA SD L + Q L G+ Sbjct: 347 DWRVRPLTKPLLAYARSDTHFLLYIFDQLNNMLIESGK 384 >gi|14250912|emb|CAC39261.1| Rrp6p homologue [Trypanosoma brucei] Length = 703 Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E + C++Q+S D VD +++ A N + + + K+FH Sbjct: 235 IAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRA---NMYLMAPVFLQPNIVKVFH 291 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ L FG+ + +F T IA + H L + + ++K Q++DW Sbjct: 292 GAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSLAFAVDHFCQVKLNKKYQTADW 348 Query: 141 SADDLSDEQLQYAASD 156 + E + YA D Sbjct: 349 RVRPIPAEMVSYAQQD 364 >gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B] gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B] Length = 372 Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 13/154 (8%) Query: 13 AECAARYVDA--IAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 AE A+ +D +A+DTE RRD + +VQ++ D V +I P L Sbjct: 13 AEVVAQVIDGDFVAIDTE----FRRRDTFWPEVALVQIATAD-QVWLIDPLPLTDTGP-L 66 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L K+ H D+ V GV P+F T+ A+ L Y ++ + Sbjct: 67 AELLQKSTLTKVLHSAGEDLEVFQAWLGVLPSPLFDTQKAAALL-GYGFGLSYAKLVEAV 125 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +++ K + +SDW L+ Q +YAA DV +L Sbjct: 126 CQVSLDKDETNSDWLVRPLTSAQCRYAAQDVTYL 159 >gi|241670620|ref|XP_002399861.1| conserved hypothetical protein [Ixodes scapularis] gi|215506210|gb|EEC15704.1| conserved hypothetical protein [Ixodes scapularis] Length = 853 Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 21/154 (13%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKIFH 80 +A+D E + L PR L ++QL+ G V + + + + + L +L + K+ H Sbjct: 551 LALDAEGVNLGPR-GPLTLLQLATAAGEVFLFDVQSTPQLFDEGKLKDILESQTIVKVVH 609 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ----HGLKD-NLKELLGI-----N 130 R D A LFY FG+R++ VF T+ A+ T +Q H +K+ +L L G+ N Sbjct: 610 DCRNDSAALFYQFGIRLQNVFDTQ-AAHATLQQQDQGKPVHKVKNVSLGTLCGLYGGPPN 668 Query: 131 ISKAQQSS-------DWSADDLSDEQLQYAASDV 157 + Q S WS LS++ + +AA DV Sbjct: 669 PRREQVKSLYRRDQKFWSRRPLSEDMVFHAAFDV 702 >gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 [Equus caballus] Length = 886 Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 6/98 (6%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FG+ V +F T A+RL +H L LK + +K Q Sbjct: 363 KVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKRYCSVESNKQYQ 420 Query: 137 SSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 +DW L +E L YA D +L +RL+ E+ Sbjct: 421 LADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWER 458 >gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated autoantigen homolog [Mus musculus] Length = 831 Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444 >gi|254416561|ref|ZP_05030312.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176527|gb|EDX71540.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] Length = 303 Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 12/94 (12%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHGLKDNLKELLGI--N 130 EK+FH +D L + + V CT ++ Y + LK L E GI Sbjct: 82 EKVFHNASYDRKFLG---KHKAKNVTCTLELAKTIPYYRLPVPNYQLK-TLTEYFGICPQ 137 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVV---HLH 161 + K +Q+ DW LS QL YAA DVV HLH Sbjct: 138 VDKTEQTGDWRKRPLSPRQLDYAAKDVVYVAHLH 171 >gi|293347809|ref|XP_002726703.1| PREDICTED: rCG30986-like isoform 2 [Rattus norvegicus] Length = 860 Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 414 ESNKQYQLADWRIRPLPEEMLNYARDDTHYL 444 >gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus] Length = 916 Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 359 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 416 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 417 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 447 >gi|293347807|ref|XP_002726702.1| PREDICTED: rCG30986-like isoform 1 [Rattus norvegicus] gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus] Length = 885 Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 414 ESNKQYQLADWRIRPLPEEMLNYARDDTHYL 444 >gi|149911424|ref|ZP_01900042.1| RNase D, processes tRNA precursor [Moritella sp. PE36] gi|149805532|gb|EDM65537.1| RNase D, processes tRNA precursor [Moritella sp. PE36] Length = 376 Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A+CA V+ +A+DTE + L + QL G T + +A ++ + L+D Sbjct: 17 AQCAE--VEVLAIDTEFIRQRTYYPILGLFQLYTGTETYLVDPLAVEDLSS---LWQLLD 71 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131 + + H D+ V F T + F T+IA+ + G + E I + Sbjct: 72 -RHPVVLHACSEDLDV-FMTVANKFPDFFHDTQIAAAFCGL-GSSLGFGGLVAEYQKITL 128 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K + S+W A L+++QL YAA+DV HL + KL LG D Sbjct: 129 DKGESRSNWLARPLTEKQLSYAAADVYHLLPCWNELEAKLNELGYYD 175 >gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus] gi|123226356|emb|CAM23944.1| exosome component 10 [Mus musculus] gi|123248912|emb|CAM21194.1| exosome component 10 [Mus musculus] Length = 862 Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444 >gi|118372761|ref|XP_001019575.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89301342|gb|EAR99330.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 881 Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 11/161 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+D E C++Q+S D VD+ + K+ L + D+ K+ H Sbjct: 266 VAIDLEHHSYRSFNGITCLMQISSRTKDYIVDVFSV---WKSLHKLNAVTTDKNIVKVLH 322 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L FG+ + +F T A+R + + L L+ + + K Q +DW Sbjct: 323 GADMDIQWLQRDFGIYIVNLFDTGQAARTLSMPS--YALAYLLQSISKVPTDKKYQLADW 380 Query: 141 SADDLSDEQLQYAASDVVHLHA----LRLQFTEKLQRLGRS 177 L E + YA SD +L + LR+Q K + G++ Sbjct: 381 RIRPLPREMISYARSDTHYLLSIYDNLRIQLVSKALQQGQN 421 >gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus] Length = 864 Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 358 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 415 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 416 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 446 >gi|187466046|emb|CAQ52093.1| exosome component 10 [Mus musculus] gi|187466070|emb|CAQ51624.1| exosome component 10 [Mus musculus] Length = 861 Score = 41.2 bits (95), Expect = 0.092, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 355 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 412 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 413 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 443 >gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus] gi|123226357|emb|CAM23945.1| exosome component 10 [Mus musculus] gi|123248913|emb|CAM21195.1| exosome component 10 [Mus musculus] Length = 887 Score = 41.2 bits (95), Expect = 0.095, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444 >gi|320583859|gb|EFW98072.1| hypothetical protein HPODL_0702 [Pichia angusta DL-1] Length = 729 Score = 41.2 bits (95), Expect = 0.096, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 13/162 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV---DEKREKIF 79 IAVD E C++QL+ D D + + P+LV + V D K+F Sbjct: 241 IAVDLEHHDYRTYHGITCLMQLTT-DTKKDYLIDPLSPELRPHLVNLNVIFTDPNIVKVF 299 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H DI L G+ V +F T ASR +H L L+ + SK Q +D Sbjct: 300 HGAFMDIIWLQRDLGLYVVSLFDTYHASR--ELGLGRHSLAHLLETYVKFKTSKKWQLAD 357 Query: 140 WSADDLSDEQLQYAASDV-------VHLHALRLQFTEKLQRL 174 W L+ E YA +D +H+ +Q +KL+++ Sbjct: 358 WRMRPLNSEMKNYAKADTHFLIEVFYKMHSELVQNPDKLKKV 399 >gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus] Length = 887 Score = 41.2 bits (95), Expect = 0.097, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444 >gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7] gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7] Length = 2016 Score = 41.2 bits (95), Expect = 0.097, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81 +D ET GL + + ++Q++ + V I + K L +L ++ KI Sbjct: 1468 GLDIETTGLEVFDENIRLIQIAVENYPVIIYDMFNINKKDILDGLRKVLENKNIIKIIQN 1527 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139 G+FD L + ++ +F T IAS+L N +G K N +++ L + + K QQ+S Sbjct: 1528 GKFDAKFLLHN-NFKIENIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVILDKQQQNSV 1586 Query: 140 WSADDLSDEQLQYAASD 156 W+ L++ QL YAA D Sbjct: 1587 WNNSLLNNNQLFYAARD 1603 >gi|187466045|emb|CAQ52092.1| exosome component 10 [Mus musculus] gi|187466069|emb|CAQ51623.1| exosome component 10 [Mus musculus] Length = 886 Score = 41.2 bits (95), Expect = 0.098, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 355 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 412 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 413 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 443 >gi|8928261|sp|P56960|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma autoantigen 2 homolog gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated autoantigen homolog [Mus musculus] gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus] gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus] Length = 887 Score = 41.2 bits (95), Expect = 0.099, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L L+ G+ Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444 >gi|298481453|ref|ZP_06999645.1| 3'-5' exonuclease domain protein [Bacteroides sp. D22] gi|295086916|emb|CBK68439.1| Ribonuclease D [Bacteroides xylanisolvens XB1A] gi|298272317|gb|EFI13886.1| 3'-5' exonuclease domain protein [Bacteroides sp. D22] Length = 222 Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 Y Q G++D +L+++ I ISK+Q+ S+W AD LSD Q QYAA+D Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177 >gi|317051081|ref|YP_004112197.1| 3'-5' exonuclease [Desulfurispirillum indicum S5] gi|316946165|gb|ADU65641.1| 3'-5' exonuclease [Desulfurispirillum indicum S5] Length = 213 Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 29/53 (54%) Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 IA TR Q GL+ L G +SK + SDWS LS EQ++YAA+D Sbjct: 133 IAHLATRLGIKQTGLRTLCALLFGKRLSKKARCSDWSRKHLSAEQIKYAAADA 185 >gi|260171573|ref|ZP_05757985.1| hypothetical protein BacD2_06865 [Bacteroides sp. D2] gi|315919887|ref|ZP_07916127.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693762|gb|EFS30597.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 219 Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 Y Q G++D +L+++ I ISK+Q+ S+W AD LSD Q QYAA+D Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177 >gi|153807650|ref|ZP_01960318.1| hypothetical protein BACCAC_01932 [Bacteroides caccae ATCC 43185] gi|149130012|gb|EDM21224.1| hypothetical protein BACCAC_01932 [Bacteroides caccae ATCC 43185] Length = 214 Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 12/76 (15%) Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASDV---VHLHALR 164 Y Q G++D +L+++ I ISK+Q+ S+W AD LSD Q QYAA+D ++++ L Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNL- 187 Query: 165 LQFTEKLQRLGRSDLA 180 ++L+R G ++A Sbjct: 188 ---LQELKRTGNYEIA 200 >gi|297203084|ref|ZP_06920481.1| ribonuclease D [Streptomyces sviceus ATCC 29083] gi|297148288|gb|EDY56116.2| ribonuclease D [Streptomyces sviceus ATCC 29083] Length = 262 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 10/160 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LVDEKREKIFH 80 +AVD E R +VQL G GT I +A P+L G+ E + H Sbjct: 66 VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC-----PDLSGLGEALSGAEWVLH 120 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L + R +F T++A R+ + GL ++ +LG + K + DW Sbjct: 121 AATQDLPCLREIGMIPSR-LFDTELAGRIA--GFPRVGLGAMVEGVLGFVLEKGHSAVDW 177 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 S L + L+YAA DV L LR ++L R G+ + A Sbjct: 178 STRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 217 >gi|224135103|ref|XP_002321984.1| predicted protein [Populus trichocarpa] gi|222868980|gb|EEF06111.1| predicted protein [Populus trichocarpa] Length = 491 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 25/33 (75%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 KE+LGI++SK Q SDWS L++EQ YAA+D Sbjct: 164 KEVLGISLSKELQCSDWSHRPLTEEQKTYAAAD 196 >gi|224283333|ref|ZP_03646655.1| Ribonuclease D [Bifidobacterium bifidum NCIMB 41171] gi|313140484|ref|ZP_07802677.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171] gi|313132994|gb|EFR50611.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171] Length = 428 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G+ + +F T+IA+R+ + + GL + LG+ ++K ++DWS L + Sbjct: 106 FADIGLTPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 YAA DV L LR + +L+ G+ A Sbjct: 164 RNYAALDVELLIELRRKMQRELKSQGKDGWA 194 >gi|160887119|ref|ZP_02068122.1| hypothetical protein BACOVA_05135 [Bacteroides ovatus ATCC 8483] gi|293370879|ref|ZP_06617424.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f] gi|299148614|ref|ZP_07041676.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23] gi|156107530|gb|EDO09275.1| hypothetical protein BACOVA_05135 [Bacteroides ovatus ATCC 8483] gi|292634095|gb|EFF52639.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f] gi|298513375|gb|EFI37262.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23] Length = 219 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 Y Q G++D +L+++ I ISK+Q+ S+W AD LSD Q QYAA+D Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177 >gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta] Length = 884 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWER 482 >gi|237715608|ref|ZP_04546089.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408617|ref|ZP_06085163.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646256|ref|ZP_06723909.1| 3'-5' exonuclease [Bacteroides ovatus SD CC 2a] gi|294805802|ref|ZP_06764678.1| 3'-5' exonuclease [Bacteroides xylanisolvens SD CC 1b] gi|229444317|gb|EEO50108.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353482|gb|EEZ02576.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638389|gb|EFF56754.1| 3'-5' exonuclease [Bacteroides ovatus SD CC 2a] gi|294446978|gb|EFG15569.1| 3'-5' exonuclease [Bacteroides xylanisolvens SD CC 1b] Length = 222 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 Y Q G++D +L+++ I ISK+Q+ S+W AD LSD Q QYAA+D Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177 >gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta] Length = 884 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWER 458 >gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens] gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens] gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens] gi|56204111|emb|CAI22106.1| exosome component 10 [Homo sapiens] Length = 860 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 458 >gi|237721388|ref|ZP_04551869.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449184|gb|EEO54975.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 219 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 Y Q G++D +L+++ I ISK+Q+ S+W AD LSD Q QYAA+D Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177 >gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens] Length = 884 Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482 >gi|315103391|gb|EFT75367.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA2] Length = 412 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 17/165 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRI--AAGQKN-APNLVGMLVDEKR 75 IA+DTE R C++QL DG+ VD + + A G K A L G Sbjct: 38 IAIDTERAHGFRYSPRACLIQLR-RDGSSTHLVDPLALGGAVGLKPLAKALAGT------ 90 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 + I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 91 QWILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PKVSLGPMVEHYCGVTLLKEH 147 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 148 SASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 >gi|290975670|ref|XP_002670565.1| predicted protein [Naegleria gruberi] gi|284084125|gb|EFC37821.1| predicted protein [Naegleria gruberi] Length = 491 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 33/124 (26%) Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTY------------- 113 ++ DE+ EK+FHY FD+ F + V CT +I+S+ + Sbjct: 187 NIMFDERCEKVFHYKTFDLK--FLGGASYCKNVSCTHEISSKYIPYHLLPISNYKLDTLS 244 Query: 114 -----------------TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 +N G + +KELL + K Q SDW LS Q++YA D Sbjct: 245 HYLTSRIISHINNVSQTSNDIGNLEEIKELLTYSNKKELQESDWFERPLSPTQVEYATQD 304 Query: 157 VVHL 160 V+ L Sbjct: 305 VITL 308 >gi|332827669|gb|EGK00408.1| hypothetical protein HMPREF9455_03256 [Dysgonomonas gadei ATCC BAA-286] Length = 181 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 32/170 (18%) Query: 4 IRVHEGDIPAECAARYVD---AIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAA 58 I V + + AE AA Y+ AI DTET + ++ ++QLS D T + R+ Sbjct: 8 IIVVQSESEAEKAAAYLKKQTAIGFDTETRPAFRKGVSHQIALMQLSTDD-TCFLFRL-- 64 Query: 59 GQKNAPNLVGM-------LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111 N++G+ LV+ +KI + D + + V F + Sbjct: 65 ------NIIGLPDCLAEILVNPAIKKIGLSLKDDFSAIHKRNAAFVPSNFIE------LQ 112 Query: 112 TYTNQHGLKDN-LKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 ++ +G++DN L+ + GI ISK Q+ S+W AD LSD Q YAA D Sbjct: 113 SFVKNYGIEDNGLQRIYGILFEKRISKGQRLSNWEADVLSDAQKMYAAID 162 >gi|332807620|ref|XP_001136452.2| PREDICTED: exosome component 10 isoform 3 [Pan troglodytes] Length = 884 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482 >gi|332250403|ref|XP_003274341.1| PREDICTED: exosome component 10 [Nomascus leucogenys] Length = 912 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWER 482 >gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens] gi|8928564|sp|Q01780|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma overlap syndrome-associated autoantigen; AltName: Full=Polymyositis/scleroderma autoantigen 100 kDa; Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma autoantigen 2 gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens] gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens] gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens] gi|56204112|emb|CAI22107.1| exosome component 10 [Homo sapiens] gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens] gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct] gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct] gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct] Length = 885 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 458 >gi|255007833|ref|ZP_05279959.1| putative 3'-5' exonuclease [Bacteroides fragilis 3_1_12] gi|313145540|ref|ZP_07807733.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134307|gb|EFR51667.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 215 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 18/81 (22%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD------VVH 159 + Y G++D +L+++ GI ISK+Q+ S+W AD L+D Q QYAA+D + H Sbjct: 127 QEYVRPFGIQDKSLQKIYGILFREKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH 186 Query: 160 LHALRLQFTEKLQRLGRSDLA 180 L + L+R G +LA Sbjct: 187 L-------LQDLKRTGNYELA 200 >gi|114553916|ref|XP_514382.2| PREDICTED: exosome component 10 isoform 5 [Pan troglodytes] Length = 885 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 458 >gi|314966730|gb|EFT10829.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA2] Length = 412 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 17/165 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRI--AAGQKN-APNLVGMLVDEKR 75 IA+DTE R C++QL DG+ VD + + A G K A L G Sbjct: 38 IAIDTERAHGFRYSPRACLIQLR-RDGSSTHLVDPLALGGAVGLKPLAKALAGT------ 90 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 + I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 91 QWILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PKVSLGPMVEHYCGVTLLKEH 147 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 148 SASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 >gi|306836261|ref|ZP_07469243.1| ribonuclease D [Corynebacterium accolens ATCC 49726] gi|304567853|gb|EFM43436.1| ribonuclease D [Corynebacterium accolens ATCC 49726] Length = 406 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 67/154 (43%), Gaps = 19/154 (12%) Query: 13 AECAARY---VDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAP 64 AE AAR A A+DTE DR ++Q+ G GT+ + R Q AP Sbjct: 23 AEAAARLQAGTGAFAIDTERASGYRYDDRAFLIQIRRRGAGTMLFAPEGHRAELAQALAP 82 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR-TYTNQHGLKDNL 123 L G + I H D+ L + G+ +F T++A+R T TN L + Sbjct: 83 VLNG------QHWIIHAAPSDLPSLGW-LGLFPGTLFDTELAARFTGFPRTN---LGAII 132 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 EL + + K DWS LS+E YAA DV Sbjct: 133 AELFDVQLGKGHGDDDWSIPQLSEEMRAYAALDV 166 >gi|282853987|ref|ZP_06263324.1| 3'-5' exonuclease [Propionibacterium acnes J139] gi|282583440|gb|EFB88820.1| 3'-5' exonuclease [Propionibacterium acnes J139] gi|314923384|gb|EFS87215.1| 3'-5' exonuclease [Propionibacterium acnes HL001PA1] gi|314981064|gb|EFT25158.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA3] gi|315091889|gb|EFT63865.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA4] gi|315093353|gb|EFT65329.1| 3'-5' exonuclease [Propionibacterium acnes HL060PA1] gi|327327556|gb|EGE69332.1| putative ribonuclease D [Propionibacterium acnes HL103PA1] Length = 412 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 17/165 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRI--AAGQKN-APNLVGMLVDEKR 75 IA+DTE R C++QL DG+ VD + + A G K A L G Sbjct: 38 IAIDTERAHGFRYSPRACLIQLR-RDGSSTHLVDPLALGGAVGLKPLAKALAGT------ 90 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 + I H D+ L G+R +F T++A RL + L ++ G+ + K Sbjct: 91 QWILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PKVSLGPMVEHYCGVTLLKEH 147 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +SDWS L + YAA DV L+ LR + L G+ + A Sbjct: 148 SASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 >gi|242034371|ref|XP_002464580.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor] gi|241918434|gb|EER91578.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor] Length = 882 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D ++K+ H DI L F + V +F T AS++ + +++ L+ L G+ Sbjct: 315 DPTKKKVMHGAGRDIIWLQRDFSIYVCNLFDTGQASKVLQM--DRNSLEHLLHHFCGVTA 372 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEKLQRLGRSDLATSCC 184 +K Q++DW L DE ++YA D +L +RL+ + G +DL C Sbjct: 373 NKEYQAADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVN--ESSGENDLLLEVC 427 >gi|332807618|ref|XP_001136533.2| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes] Length = 909 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482 >gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] Length = 935 Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 25/190 (13%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV----GMLVDEKREKIFHY 81 DTET + P + L + + G + + AG++NA +V +L +EK KI Sbjct: 366 DTETTHVEPTQAELVGMSFAYKSGEAYYVPVPAGKENAQAVVEIFRPVLENEKILKIAQN 425 Query: 82 GRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKE------------LLG 128 ++D A++F +GV VR P F T +A L +HG+ D L E L+G Sbjct: 426 LKYD-AIVFKWYGVEVRGPYFDTMVAHYLLEPEM-RHGM-DYLAETYLSYSPISIEMLIG 482 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA-TSCCNFL 187 K + + S DL ++ YAA D L+ F KL+ G +L T C + Sbjct: 483 ---KKGKDQLNMSQIDL-EKVTDYAAEDADITLQLKELFAPKLEEGGVQELFDTIECPLI 538 Query: 188 MDRAELDLLG 197 A+L+ G Sbjct: 539 KVLADLEYEG 548 >gi|255074453|ref|XP_002500901.1| predicted protein [Micromonas sp. RCC299] gi|226516164|gb|ACO62159.1| predicted protein [Micromonas sp. RCC299] Length = 316 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 36/195 (18%) Query: 2 TTIRVHEGDIPAECAARYVDAIA------VDTETLGLMPRRDRLCIVQLSPGDGTVDIIR 55 T RV D P CA + IA VD E + L R + + Q++P +G V ++ Sbjct: 72 TPPRVILLDDPGSCADAMRELIARGEPCAVDFEGVALS-RTGAISLAQVAPPNGPVYLVD 130 Query: 56 IA---AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 +A A + L +L K+ R D L + FGVR+R VF ++A L + Sbjct: 131 VACMGAAAFDEGRLGELLGATHPLKLVFDCRGDADALHHQFGVRMRGVFDVQVAFCLKKD 190 Query: 113 YTNQH-------GLKDNLKELLGIN---------ISKAQQS----------SDWSADDLS 146 + GL+ LKE G++ + A S W+ + Sbjct: 191 VDHGGKRGAYLMGLRKALKECPGLDDEARHELDAVKSAGASLFAPELGGSYDAWTKRPMH 250 Query: 147 DEQLQYAASDVVHLH 161 + ++YAA+DV +LH Sbjct: 251 PDLVKYAAADVTYLH 265 >gi|212715679|ref|ZP_03323807.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM 16992] gi|212661046|gb|EEB21621.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM 16992] Length = 431 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G++ + +F T+IA+RL + GL + LG+ ++K ++DWS L + Sbjct: 106 FNDLGLKPQRLFDTEIAARLL--GMKRFGLAAVTEHYLGLTLAKEHSAADWSYRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 YAA DV L L +L+R G+ + A ++ + Sbjct: 164 RNYAALDVELLIELETIMRAELRRQGKIEWAEEEFDYAL 202 >gi|66816197|ref|XP_642108.1| 3'-5' exonuclease domain-containing protein [Dictyostelium discoideum AX4] gi|60470232|gb|EAL68212.1| 3'-5' exonuclease domain-containing protein [Dictyostelium discoideum AX4] Length = 718 Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 5/121 (4%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 ++ ++QLS + T +I+++ +K +L +L D + K+ D A +F TF V Sbjct: 223 KVALIQLSSKNETF-LIQVSQMEKIPTSLEQILTDPRLIKVGVAVSQDAATIFQTFSVVT 281 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155 + +RLT N GL ++ + + K+ + S W DL+++Q+ YAA+ Sbjct: 282 KGCVDLVPIARLTNYEGN--GLASLALNVMNVTLDKSNLIRCSHWENKDLTNDQIHYAAA 339 Query: 156 D 156 D Sbjct: 340 D 340 >gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens] Length = 899 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 + +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482 >gi|325180763|emb|CCA15173.1| LETM1 and EFhand domaincontaining protein 1 putative [Albugo laibachii Nc14] Length = 1136 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 15/146 (10%) Query: 20 VDAIAVDTETLGLMPRRDR------LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 V + +DTE PR D + ++Q+S D TV + RI Q P L +L Sbjct: 149 VKIVGIDTEC---RPRFDSNKANNPVSLIQISTID-TVYLYRIKRQQPLPPLLGHLLASP 204 Query: 74 KREKIFHYGRFDIAVLFYTFGV-RVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINI 131 K+ H R D L + V RV T IA RL ++ GLK + L N+ Sbjct: 205 HVIKVGHSLRDDCKSLRESKLVERVSSTLDTLPIAKRLG---CSRPGLKTLCQIFLDHNL 261 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDV 157 SK Q SDW + DLS +Q+QYAA+D Sbjct: 262 SKKMQLSDWESPDLSVKQIQYAATDA 287 >gi|218885986|ref|YP_002435307.1| 3'-5' exonuclease [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756940|gb|ACL07839.1| 3'-5' exonuclease [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 201 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV-----VHLHALRLQFTEK 170 HGL++ L + ISK Q S+WS +L+ +Q+ YAA+D +HL RL ++ Sbjct: 143 HGLRNLAANFLEVRISKGAQCSNWSNRELAPQQVLYAATDAWVSREIHLRMRRLGLIDR 201 >gi|332971116|gb|EGK10083.1| ribonuclease D [Psychrobacter sp. 1501(2011)] Length = 437 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 16/172 (9%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL----VGMLVDEKRE 76 D +A+DTE + L +VQ++ G+ I +AP L ++++E Sbjct: 70 DRVALDTEFIKRSTYFPILALVQINTGECIYLI--------DAPKLDLTEFWVVLEEMPL 121 Query: 77 KIFHYGRFDIAVLFY-TFGVRVRPVFCTKIA-SRLTRTYTNQHGLKDNLKELLGINISKA 134 I+H D+ + + + + VF T+IA S LT Q G + L + L +++ K Sbjct: 122 MIWHACGEDLGIFYLLSESPALTNVFDTQIALSYLTGQL--QMGYQQALSQELDVHVDKG 179 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 + SDW A L+ EQ YA DV +L L ++L + D C Sbjct: 180 ESQSDWLARPLTHEQESYAIDDVRYLLNLYDILQQQLTKQSLLDKVIEDCQL 231 >gi|311064600|ref|YP_003971325.1| ribonuclease D [Bifidobacterium bifidum PRL2010] gi|310866919|gb|ADP36288.1| Ribonuclease D [Bifidobacterium bifidum PRL2010] Length = 428 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G+ + +F T+IA+R+ + + GL + LG+ ++K ++DWS L + Sbjct: 106 FADIGLTPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 YAA DV L LR + +L+ G+ A + + Sbjct: 164 RNYAALDVELLIELRRKMQRELKAQGKDGWADEEFRYAL 202 >gi|29349740|ref|NP_813243.1| hypothetical protein BT_4332 [Bacteroides thetaiotaomicron VPI-5482] gi|253569894|ref|ZP_04847303.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384013|ref|ZP_06993574.1| 3'-5' exonuclease domain protein [Bacteroides sp. 1_1_14] gi|29341650|gb|AAO79437.1| 3'-5' exonuclease-like protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840275|gb|EES68357.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298263617|gb|EFI06480.1| 3'-5' exonuclease domain protein [Bacteroides sp. 1_1_14] Length = 216 Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 Y Q G++D +L+++ I ISK+Q+ S+W AD LSD Q QYAA+D Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177 >gi|67593930|ref|XP_665760.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54656583|gb|EAL35530.1| hypothetical protein Chro.50386 [Cryptosporidium hominis] Length = 875 Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H +DI L F V + +F T A+R+ T + LK+ L ++I K Q Sbjct: 357 KVLHGSDYDIIWLQRDFSVYIVNMFDTGQAARILNT-PGGYSLKNLLSIYCSLDIDKRFQ 415 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW LS+E ++YA D +L Sbjct: 416 LADWRERPLSNELIEYARGDTHYL 439 >gi|66357594|ref|XP_625975.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD domain and an HRDc domain [Cryptosporidium parvum Iowa II] gi|46227246|gb|EAK88196.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD domain and an HRDc domain [Cryptosporidium parvum Iowa II] Length = 957 Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H +DI L F V + +F T A+R+ T + LK+ L ++I K Q Sbjct: 357 KVLHGSDYDIIWLQRDFSVYIVNMFDTGQAARILNT-PGGYSLKNLLSIYCSLDIDKRFQ 415 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW LS+E ++YA D +L Sbjct: 416 LADWRERPLSNELIEYARGDTHYL 439 >gi|111221533|ref|YP_712327.1| putative ribonuclease D [Frankia alni ACN14a] gi|111149065|emb|CAJ60747.1| Putative ribonuclease D (partial match) [Frankia alni ACN14a] Length = 545 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R +F T++A RL Y + GL ++ +LG + K Sbjct: 115 EWVLHAASQDLPCL-AELGLRPALLFDTELAGRLL-GY-ERVGLGMMVERVLGYGLEKGH 171 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALR 164 ++DWS L + L+YAA DV L LR Sbjct: 172 SAADWSTRPLPEPWLRYAALDVELLVELR 200 >gi|255693419|ref|ZP_05417094.1| 3'-5' exonuclease domain protein [Bacteroides finegoldii DSM 17565] gi|260620806|gb|EEX43677.1| 3'-5' exonuclease domain protein [Bacteroides finegoldii DSM 17565] Length = 214 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 Y Q G++D +L+++ I ISK+Q+ S+W AD LSD Q QYAA+D Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177 >gi|295835905|ref|ZP_06822838.1| ribonuclease D [Streptomyces sp. SPB74] gi|295825772|gb|EFG64472.1| ribonuclease D [Streptomyces sp. SPB74] Length = 430 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 +F T++A RL + GL ++ +LG + K + DWS L + L+YAA DV Sbjct: 141 LFDTELAGRLA--GFPRVGLGAMVENVLGYTLEKGHSAVDWSTRPLPEPWLRYAALDVEL 198 Query: 160 LHALRLQFTEKLQRLGRSDLA 180 L LR ++L R G+ + A Sbjct: 199 LVDLRDALEKELDRQGKLEWA 219 >gi|327394110|dbj|BAK11532.1| ribonuclease D Rnd [Pantoea ananatis AJ13355] Length = 274 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 38/73 (52%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G + + + K++ +DW A L++ Q QYAA+DV +L + Q ++++++G Sbjct: 18 GFASMVAHFTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAHQLMQQVEQVGNM 77 Query: 178 DLATSCCNFLMDR 190 A S C L R Sbjct: 78 AAALSECENLCQR 90 >gi|291436577|ref|ZP_06575967.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672] gi|291339472|gb|EFE66428.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672] Length = 432 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L + R +F T++A RL + GL ++ +LG + K Sbjct: 116 EWVLHAATQDLPCLREIGMLPTR-LFDTELAGRLA--GFPRVGLGAMVENVLGYVLEKGH 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRNALEKELDRQGKLEWA 217 >gi|294815677|ref|ZP_06774320.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064] gi|326444024|ref|ZP_08218758.1| ribonuclease D [Streptomyces clavuligerus ATCC 27064] gi|294328276|gb|EFG09919.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064] Length = 428 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 116 EWILHAATQDLPCL-RDIGMAPALLFDTELAGRLA--GFPRVGLGAMVESVLGYALEKGH 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L+YAA DV L LR E+L G+ + A Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLIDLRDALEEELAEQGKLEWA 217 >gi|258546025|ref|ZP_05706259.1| ribonuclease D [Cardiobacterium hominis ATCC 15826] gi|258518754|gb|EEV87613.1| ribonuclease D [Cardiobacterium hominis ATCC 15826] Length = 401 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 29/54 (53%) Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++ LGI K+Q SDW A L+ QL YAA DV L L LQRLGR Sbjct: 165 VEHYLGIAPDKSQTRSDWLARPLNAAQLDYAADDVGLLARLYPLLVADLQRLGR 218 >gi|239928248|ref|ZP_04685201.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672] Length = 398 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L + R +F T++A RL + GL ++ +LG + K Sbjct: 82 EWVLHAATQDLPCLREIGMLPTR-LFDTELAGRLA--GFPRVGLGAMVENVLGYVLEKGH 138 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 139 SAVDWSTRPLPEPWLRYAALDVELLVDLRNALEKELDRQGKLEWA 183 >gi|73950874|ref|XP_535408.2| PREDICTED: similar to exosome component 10 isoform 1 [Canis familiaris] Length = 1012 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 482 LTDPTIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCSV 539 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170 +K Q +DW L +E L YA D +L +RL+ E+ Sbjct: 540 ESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWER 584 >gi|209881893|ref|XP_002142384.1| exosome component 10 [Cryptosporidium muris RN66] gi|209557990|gb|EEA08035.1| exosome component 10, putative [Cryptosporidium muris RN66] Length = 1029 Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 4/139 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVD-IIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +A+D E + R +C++Q+S T D II + L + + + K+FH Sbjct: 401 LAIDLEHHSMQTFRGFVCLIQMSTR--TCDYIIDPFPLFEELSRLNELTTNPRILKLFHG 458 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 +DI L F V V +F T A+R+ T + L + L + +K Q SDW Sbjct: 459 SDYDIIWLQRDFSVYVVNMFDTGQAARVLNT-PGGYSLGNLLNLYCSVEANKQYQLSDWR 517 Query: 142 ADDLSDEQLQYAASDVVHL 160 L ++YA SD +L Sbjct: 518 ERPLPQHLIEYARSDTHYL 536 >gi|87307951|ref|ZP_01090094.1| ribonuclease D [Blastopirellula marina DSM 3645] gi|87289565|gb|EAQ81456.1| ribonuclease D [Blastopirellula marina DSM 3645] Length = 392 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 9/142 (6%) Query: 39 LCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 LC+VQ++ G+ VD RI + ++ + H GR + + G Sbjct: 41 LCLVQIAAGEILAIVDPKRI----DDMNVFWELIAGGDHVSVVHSGREEFLFCYRATGKA 96 Query: 97 VRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155 +F T+IA L Y G + + LL + K + +DW LS Q++YA + Sbjct: 97 PANLFDTQIAGGLIGMEYPASFG--NLILRLLDEKLPKGETRTDWRVRPLSSRQIEYALN 154 Query: 156 DVVHLHALRLQFTEKLQRLGRS 177 DV +L + ++L +L R+ Sbjct: 155 DVAYLGPAAQELEKELTKLDRT 176 >gi|322815315|gb|EFZ23992.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi] Length = 713 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 25/172 (14%) Query: 5 RVHEGDIP-AECAARYVDA----------------IAVDTETLGLMPRRDRLCIVQLS-- 45 RV +P A+C R+VDA IAVD E + C++Q+S Sbjct: 200 RVETPYLPLAQCPLRFVDATVDLEEVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTR 259 Query: 46 PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105 D +D +++ + L + ++ K+ H R DI L FG+ + F T I Sbjct: 260 SEDILIDCLKLRSLMHL---LAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGI 316 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 A +T HGL + + + K Q++DW + E + YA D Sbjct: 317 A---LQTLHMPHGLAFAVDHFCQVKLDKKYQTADWRIRPIPAEMVTYARQDT 365 >gi|319901369|ref|YP_004161097.1| 3'-5' exonuclease [Bacteroides helcogenes P 36-108] gi|319416400|gb|ADV43511.1| 3'-5' exonuclease [Bacteroides helcogenes P 36-108] Length = 220 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 + Y G++D +L+++ GI ISK+Q+ S+W AD LS+ Q QYAA+D L Sbjct: 127 QEYVRAFGIQDKSLQKIYGILFGEKISKSQRLSNWEADMLSESQKQYAATDAWAC----L 182 Query: 166 QFTEKLQRLGRS 177 +LQ L R+ Sbjct: 183 NIYNRLQELKRT 194 >gi|315608200|ref|ZP_07883192.1| 3'-5' exonuclease domain protein [Prevotella buccae ATCC 33574] gi|315250169|gb|EFU30166.1| 3'-5' exonuclease domain protein [Prevotella buccae ATCC 33574] Length = 215 Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 44/176 (25%) Query: 21 DAIAVDTETLGLMPR-------------RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 D + DTET + R RD + +L+ T DIIR+ + N + Sbjct: 46 DILGFDTETKPVFRRGQHSKVALLQVANRDACILFRLNYTGMTSDIIRLL--EDNTVKKI 103 Query: 68 GM-----LVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 G+ ++ +R K F G F D+ + G+ R L + Y N Sbjct: 104 GLSWHDDILSLQRRKPFQVGSFIDLQDIVGDLGIEDRS---------LQKLYAN------ 148 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L ISK Q+ ++W AD L D Q QYAA+D ++ E+++RL R+ Sbjct: 149 ----LFQEKISKNQRLTNWEADVLKDSQKQYAATDAWTC----IKLYEEIERLKRT 196 >gi|308460613|ref|XP_003092609.1| hypothetical protein CRE_19499 [Caenorhabditis remanei] gi|308253010|gb|EFO96962.1| hypothetical protein CRE_19499 [Caenorhabditis remanei] Length = 275 Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 31/46 (67%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 LK+ +KE +G++I K + SDW+ + L+ +Q+ YAA D + +H + Sbjct: 221 SLKEAVKESVGLDIDKRETMSDWTKEILTKDQIVYAAMDALAVHYI 266 >gi|242057747|ref|XP_002458019.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor] gi|241929994|gb|EES03139.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor] Length = 340 Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 73/189 (38%), Gaps = 30/189 (15%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R LCI+QL+ D + I G++ L + K+ H Sbjct: 54 IGFDCEGVDLC-RNGALCIMQLAFPDAVYLVDAIEGGKELIQACKPALESDHITKVIHDC 112 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL--------------KELLG 128 + D L++ FG+++ V T+IA L + Q G K K G Sbjct: 113 KRDSEALYFQFGIKLHNVMDTQIAYSLIQE-QEQEGKKKTSDDYNYISFVSLLADKRFCG 171 Query: 129 INISKA--------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG----- 175 I + Q + W+ LSD ++ A DV L + + EKL ++ Sbjct: 172 IPYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRFLLNIYEKMMEKLSKVSLWRLA 231 Query: 176 -RSDLATSC 183 RS+L C Sbjct: 232 VRSELYCRC 240 >gi|308466384|ref|XP_003095446.1| hypothetical protein CRE_16334 [Caenorhabditis remanei] gi|308245291|gb|EFO89243.1| hypothetical protein CRE_16334 [Caenorhabditis remanei] Length = 275 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 31/46 (67%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 LK+ +KE +G++I K + SDW+ + L+ +Q+ YAA D + +H + Sbjct: 221 SLKEAVKESVGLDIDKRETMSDWTKEILTKDQIVYAAMDALAVHYI 266 >gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10, partial [Taeniopygia guttata] Length = 504 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 40 CIVQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 C++Q+S T D I ++ N++ D K+ H D+ L FG+ + Sbjct: 331 CLMQIS--TRTEDFIIDTLALRSDMNILNETFTDPAIVKVLHGADSDVEWLQRDFGLYLV 388 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 VF T A+RL +H L LK G++ K Q +DW L +E ++YA D Sbjct: 389 NVFDTHQAARLLNL--GRHSLDHLLKLYCGVDADKKYQLADWRIRPLPEEMIRYARDDTH 446 Query: 159 HL 160 +L Sbjct: 447 YL 448 >gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae] gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae] Length = 832 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 56/138 (40%), Gaps = 3/138 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E + C++Q+S D I+ A + + L D K K+FH Sbjct: 295 FAVDLEHHSYRSFQGFTCLMQVSTRDHDY-IVDTLALRADLHVLNDTFTDPKVVKVFHGA 353 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FGV V +F T AS + +H L LK + K Q +DW Sbjct: 354 DMDIQWLQRDFGVYVVNMFDTGQASHVLGL--PRHSLAYLLKTYCDVEPDKKYQLADWRI 411 Query: 143 DDLSDEQLQYAASDVVHL 160 L E QYA D +L Sbjct: 412 RPLPSEMTQYAREDTHYL 429 >gi|317484427|ref|ZP_07943341.1| 3'-5' exonuclease [Bilophila wadsworthia 3_1_6] gi|316924315|gb|EFV45487.1| 3'-5' exonuclease [Bilophila wadsworthia 3_1_6] Length = 198 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 27/41 (65%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 GL+ +L+G ISKA Q S+W+ L+ +Q++YAA+D Sbjct: 144 QGLRTLAAQLMGCRISKAAQCSNWAKKTLTPQQIRYAATDA 184 >gi|88856896|ref|ZP_01131548.1| ribonuclease [marine actinobacterium PHSC20C1] gi|88813864|gb|EAR23734.1| ribonuclease [marine actinobacterium PHSC20C1] Length = 418 Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++ +R+ + GL ++ LGI+++K Sbjct: 97 EWILHAATQDLTCL-REVGLYPTRLFDTELGARIA--GLPRVGLGTVVEHFLGIHLAKEH 153 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 S+DWS L L YAA DV L LR E L + D+A + ++ R Sbjct: 154 SSADWSTRPLPQAWLVYAALDVELLVDLREALGELLDSADKHDIAQQEFDSVLAR 208 >gi|170048985|ref|XP_001853674.1| 3'-5' exonuclease [Culex quinquefasciatus] gi|167870951|gb|EDS34334.1| 3'-5' exonuclease [Culex quinquefasciatus] Length = 755 Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 5/156 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + D E + +R + ++QL+ G +IR+ ++ P L +L D K+ Sbjct: 73 LGFDCEWVTEKGKRHPVALLQLASHQGLCALIRLCQMKRIPPELGELLNDPGILKVGIGA 132 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDW 140 D +L + ++V + + R +G+ ++ LG+ + K + +SDW Sbjct: 133 IEDAQLLRSDYNLKVESALDLRHLAERCRV-PGPYGMARLAEKSLGLQLDKHWRVRASDW 191 Query: 141 SADDLSDEQLQYAASDV-VHLHALRLQFTEKLQRLG 175 A +LS+ QL+YAA+D V + RL + +++ R G Sbjct: 192 EALELSERQLKYAANDAHVAVELFRL-YADRVLRCG 226 >gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana MHOM/GT/2001/U1103] Length = 743 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 17/188 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E + C++Q+S D VD +++ + + L + ++ K+FH Sbjct: 255 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL---RSSMGALAPVFLNPSILKVFH 311 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI L F + V F T +A +T + L + + ++K Q++DW Sbjct: 312 GAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPYSLAFAVDHFCQVKLNKKYQTADW 368 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-----GRSDLATSCCNFLMDRAELDL 195 LS E + YA D L L ++L+ L GR+ + + + + +L L Sbjct: 369 RVRPLSAEMVHYARQDTHFL----LYVHDRLKALLLNSEGRASIGSLLVHVYNESKQLSL 424 Query: 196 LGWENVDI 203 +E ++ Sbjct: 425 QIYEKPNV 432 >gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus] Length = 860 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FG+ V +F T A+RL +H L LK + +K Q Sbjct: 363 KVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNVESNKQYQ 420 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L +E L YA D +L Sbjct: 421 LADWRIRPLPEEMLSYARDDTHYL 444 >gi|288917119|ref|ZP_06411489.1| 3'-5' exonuclease [Frankia sp. EUN1f] gi|288351488|gb|EFC85695.1| 3'-5' exonuclease [Frankia sp. EUN1f] Length = 525 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 131 EWVLHAASQDLPCL-AELGLHPTSLFDTELAGRLL--GYERVGLGAMVERVLGFALEKGH 187 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++DWS L + L+YAA DV L LR + +L + D A Sbjct: 188 SAADWSTRPLPEPWLRYAALDVELLVELRDRLEAELVERDKIDFA 232 >gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) (ISS) [Ostreococcus tauri] gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) (ISS) [Ostreococcus tauri] Length = 701 Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 6/162 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 AVD E + C++Q+S D VD++ + + ++A L D K+ H Sbjct: 141 FAVDLEHHSYRSFKGFTCLMQVSTREKDFVVDVLALRSLVRDA--LGKAFADPNTLKVMH 198 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L FG+ V +F T A+R+ + L L+ GI +K Q +DW Sbjct: 199 GADNDVQWLQKDFGIFVSCLFDTGQAARVLELPSK--ALAYLLQHYCGIKANKKFQLADW 256 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L+ E L YA D +L + + + L G + +A + Sbjct: 257 RVRPLTREMLDYARGDTHYLLYVYDELKKALAARGENSIAAT 298 >gi|297597041|ref|NP_001043365.2| Os01g0566900 [Oryza sativa Japonica Group] gi|52076246|dbj|BAD45014.1| egalitarian-like [Oryza sativa Japonica Group] gi|125526475|gb|EAY74589.1| hypothetical protein OsI_02478 [Oryza sativa Indica Group] gi|215712371|dbj|BAG94498.1| unnamed protein product [Oryza sativa Japonica Group] gi|255673376|dbj|BAF05279.2| Os01g0566900 [Oryza sativa Japonica Group] Length = 307 Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 30/187 (16%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R LCI+Q++ D + I G++ L E K+ H Sbjct: 25 IGFDCEGVDLC-RHGALCIMQIAFPDAVYLVDAIEGGKELIEACKPALESEYVTKVIHDC 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL------------GIN 130 + D L++ FG+++ V T+IA L Q G K E + G+ Sbjct: 84 KRDSEALYFQFGIKLHNVMDTQIAYSLLE---EQEGKKRGYDEYISFVSLLADPRYCGMA 140 Query: 131 ISKA--------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG------R 176 + Q + W+ LS+ ++ A DV L ++ + EKL ++ R Sbjct: 141 YPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSIHEKMMEKLSKVSLWRLSVR 200 Query: 177 SDLATSC 183 S+L C Sbjct: 201 SELYCRC 207 >gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus] Length = 885 Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FG+ V +F T A+RL +H L LK + +K Q Sbjct: 363 KVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNVESNKQYQ 420 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L +E L YA D +L Sbjct: 421 LADWRIRPLPEEMLSYARDDTHYL 444 >gi|41582248|gb|AAR37708.2| ribonuclease D, putative [uncultured marine bacterium 441] Length = 177 Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 7/140 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+DTE + LC++Q++ D +D++ + N L L +K + I H Sbjct: 34 LAIDTEFRRVDSYLPELCLIQIATKDKLECIDVLSL----DNLDPLFVKLYGKKTKWIAH 89 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI L+ +F T+IA+ Y Q ++ + L + + K DW Sbjct: 90 SARQDIEALYSLSNQIPSAIFDTQIAASFL-NYPLQISYQNLTESLENVRLEKKFTRFDW 148 Query: 141 SADDLSDEQLQYAASDVVHL 160 L + LQYA DV +L Sbjct: 149 KKRPLPADVLQYAIDDVKYL 168 >gi|225429426|ref|XP_002276186.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147856945|emb|CAN82846.1| hypothetical protein VITISV_007988 [Vitis vinifera] gi|296081603|emb|CBI20608.3| unnamed protein product [Vitis vinifera] Length = 341 Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust. Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 25/196 (12%) Query: 1 MTTIRVHEGDIPAECAARYVDA-------IAVDTETLGLMPRRDRLCIVQLSPGDGTVDI 53 + + +H +P++ +++ I D E + L R LCI+Q++ D + Sbjct: 29 LPLVPIHIVTLPSQLPIEFLEPSPERKLVIGFDCEGVDLC-RHGTLCIMQIAFPDAIYLV 87 Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 I G+ L K+ H + D L++ FG+++ V T+IA L Sbjct: 88 DAIQGGEMLMKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ 147 Query: 114 TNQHGLKDNLKELL---------GINISKAQQSSD--------WSADDLSDEQLQYAASD 156 + L D+ + G++ + Q+ D W+ LSD ++ AA D Sbjct: 148 EGRKRLVDDYISFVGLLADPRYCGVSYLEKQEVRDLLRQNPDFWTHRPLSDLMVRAAADD 207 Query: 157 VVHLHALRLQFTEKLQ 172 V L + + EKL Sbjct: 208 VRFLLYIYHKMMEKLN 223 >gi|289739467|gb|ADD18481.1| putative 3'-5' exonuclease [Glossina morsitans morsitans] Length = 349 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 13/158 (8%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + T+R H GD + D E + + R + ++QL+ +G + R+ Sbjct: 39 VNTLRQHCGD---------YKVLGFDCEWITIGRVRKPVALLQLASPNGFCGLFRLCHMD 89 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +L +L D++ K+ D L +G+ V F + + + R GL+ Sbjct: 90 HIPESLKNLLADKEIIKVGVNPAEDARKLQGDYGIYVASTFDIRYLAAMIRC--KPLGLE 147 Query: 121 DNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASD 156 + LL ++ K S+W D L D+Q++YAA+D Sbjct: 148 KLSRSLLNVDFVKPWYIARSNWEFDKLDDDQVEYAAND 185 >gi|261880482|ref|ZP_06006909.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332821|gb|EFA43607.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 253 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 29/178 (16%) Query: 13 AECAARYV---DAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 AE A Y+ D + VDTET R + ++C++Q+S D T + R+ P + Sbjct: 35 AEKAVDYLLSSDILGVDTETRPSFHRGEQHQVCLLQVSNRD-TCFLFRLHL-TGITPAIK 92 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD-NLKEL 126 +L D +KI DI G++ R F + L + + G+KD +L++L Sbjct: 93 RLLEDTTVKKIGLSWHDDIR------GLQARENFTPGLFVDL-QDIVPELGVKDLSLQKL 145 Query: 127 ----LGINISKAQQSSDWSADDLSDEQLQYAASDV---VHLHALRLQFTEKLQRLGRS 177 G ISK Q+ S+W A LSD+Q QYAA D +HL+ E++ RL R+ Sbjct: 146 YANFFGKKISKRQRLSNWEAAVLSDKQKQYAAIDAWSCIHLY-------EEITRLKRT 196 >gi|117620631|ref|YP_856729.1| ribonuclease D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562038|gb|ABK38986.1| ribonuclease D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 379 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 1/108 (0%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ ++ + G + T++A+ Y G + E L + + K Q Sbjct: 85 ILHASGEDLELIQHQAGHLPNQMHDTQLAAAFL-GYGVSVGFGALVNEFLAVELEKDQAR 143 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 +DW A L+ QL+YAA+DV +L L + KL G+ C Sbjct: 144 TDWLARPLTPRQLEYAAADVFYLLPLYEKVMAKLHESGKFAWFEQECQ 191 >gi|242277603|ref|YP_002989732.1| 3'-5' exonuclease [Desulfovibrio salexigens DSM 2638] gi|242120497|gb|ACS78193.1| 3'-5' exonuclease [Desulfovibrio salexigens DSM 2638] Length = 198 Score = 40.0 bits (92), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 109 LTRTYTNQ-HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L R+ Q +GL++ LLG ISK Q S+W +L+ +Q+ YAA+D + L+F Sbjct: 133 LARSLEMQTNGLRNLAANLLGFRISKGVQCSNWGRKELTPQQITYAATDAWVSREIYLKF 192 Query: 168 TE 169 + Sbjct: 193 QD 194 >gi|255566405|ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis] gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative [Ricinus communis] Length = 977 Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 9/141 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIF 79 AVDTE L +VQ+S D +D I + +A ++G + + K K+F Sbjct: 145 FAVDTEQHSLRSFLGFTALVQISTQKEDYLLDTIAL----HDAMGILGAVFANPKICKVF 200 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H G DI L F + V +F T A + Q L L+ G++ +K Q D Sbjct: 201 HGGDNDILWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGVSTNKLLQRED 258 Query: 140 WSADDLSDEQLQYAASDVVHL 160 W L E LQYA +D +L Sbjct: 259 WRQRPLPAEMLQYALTDAHYL 279 >gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 743 Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 17/188 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E + C++Q+S D VD +++ + + L + ++ K+ H Sbjct: 255 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL---RSSMGALAPVFLNPSILKVLH 311 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI L F + V F T +A +T H L + + ++K Q++DW Sbjct: 312 GAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPHSLAFAVDHFCQVKLNKKYQTADW 368 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-----GRSDLATSCCNFLMDRAELDL 195 LS E + YA D L L ++L+ L GR+ + + + + +L L Sbjct: 369 RVRPLSAEMVHYARQDTHFL----LYVYDRLKALLLNSEGRASIGSLLVHVYNESKQLSL 424 Query: 196 LGWENVDI 203 +E + Sbjct: 425 QIYEKPSV 432 >gi|82621130|gb|ABB86253.1| 3'-5' exonuclease domain-containing protein-like [Solanum tuberosum] Length = 338 Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust. Identities = 43/205 (20%), Positives = 77/205 (37%), Gaps = 25/205 (12%) Query: 1 MTTIRVHEGDIPAECAARYVDA-------IAVDTETLGLMPRRDRLCIVQLSPGDGTVDI 53 +T+ +H P+E +++ I D E + L R LCI+QL+ D + Sbjct: 27 FSTVPIHVVTNPSELPVEFLEPSAETQLVIGFDCEGVDLC-RHGTLCIMQLAFPDAIYLV 85 Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 + G+ L K+ H + D L++ FG+++ V T+IA L Sbjct: 86 DAVQGGEAVVQACKPALESNYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLINEQ 145 Query: 114 TNQHGLKDNLKELLG-----------------INISKAQQSSDWSADDLSDEQLQYAASD 156 + D +G + + Q W+ LS++ ++ AA D Sbjct: 146 EGHARVPDCHISFVGLLADPRYCGVSYDEKEEVRVLLRQDPKYWTYRPLSEQMIRAAADD 205 Query: 157 VVHLHALRLQFTEKLQRLGRSDLAT 181 V L + + +KL +LA Sbjct: 206 VRFLLHIYHKMVQKLNDKSLWNLAV 230 >gi|226491678|ref|NP_001141141.1| hypothetical protein LOC100273227 [Zea mays] gi|194702850|gb|ACF85509.1| unknown [Zea mays] Length = 339 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 30/189 (15%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R LCI+QL+ D + I G++ L + K+ H Sbjct: 53 IGFDCEGVDLC-RNGALCIMQLAFPDAVYLVDAIEGGKELIQACKPALESDHITKVIHDC 111 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK---DNL-----------KELLG 128 + D L++ FG+++ V T+IA L Q G K D+ K G Sbjct: 112 KRDSEALYFQFGIKLHNVMDTQIAYSLIEE-QEQEGKKMTSDDYNYISFVSLLADKRYCG 170 Query: 129 INISKA--------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG----- 175 I + Q + W+ LSD ++ A DV L ++ + EKL ++ Sbjct: 171 ILYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRFLLSIYAKMMEKLSKVSLWRLA 230 Query: 176 -RSDLATSC 183 RS+L C Sbjct: 231 VRSELYCRC 239 >gi|311258442|ref|XP_003127631.1| PREDICTED: exosome component 10-like [Sus scrofa] Length = 759 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+FH DI L FG+ V +F T A+RL +H L LK + Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCSV 413 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 +K Q +DW L +E L YA D +L Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444 >gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue [Leishmania infantum] Length = 743 Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 17/188 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E + C++Q+S D VD +++ + + L + ++ K+ H Sbjct: 255 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL---RSSMGALAPVFLNPSILKVLH 311 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI L F + V F T +A +T H L + + ++K Q++DW Sbjct: 312 GAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPHSLAFAVDHFCQVKLNKKYQTADW 368 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-----GRSDLATSCCNFLMDRAELDL 195 LS E + YA D L L ++L+ L GR+ + + + + +L L Sbjct: 369 RVRPLSAEMVHYARQDTHFL----LYVYDRLKALLLNSEGRASIGSLLVHVYNESKQLSL 424 Query: 196 LGWENVDI 203 +E + Sbjct: 425 QIYEKPSV 432 >gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus] Length = 886 Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FG+ V +F T A+RL +H L LK ++ K Q Sbjct: 360 KVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCSVDSDKQYQ 417 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L +E L YA D +L Sbjct: 418 LADWRIRPLPEEMLSYARDDTHYL 441 >gi|283783345|ref|YP_003374099.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05] gi|283441638|gb|ADB14104.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05] Length = 476 Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F+ G+R +F T+IA++L + GL + LG+ ++K ++DWS L + Sbjct: 106 FFNIGLRPLALFDTEIAAKLLGR--KRFGLSSVTEYYLGLTLAKEHSAADWSYRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 YAA DV L L +L++ G+ A L+ + Sbjct: 164 RNYAALDVELLIELEEVMRVELKKQGKLSWAEEEFKHLLSKG 205 >gi|213510932|ref|NP_001133834.1| Exosome component 10 [Salmo salar] gi|209155512|gb|ACI33988.1| Exosome component 10 [Salmo salar] Length = 885 Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ + +F T ASR +H L LK ++ K Q Sbjct: 362 KVFHGADSDIEWLQKDLGLYIVNMFDTHQASRTLNL--GRHSLDHLLKLFCNVDSDKRYQ 419 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L DE QYA +D +L Sbjct: 420 LADWRIRPLPDEMFQYARADTHYL 443 >gi|291456557|ref|ZP_06595947.1| ribonuclease D [Bifidobacterium breve DSM 20213] gi|291381834|gb|EFE89352.1| ribonuclease D [Bifidobacterium breve DSM 20213] Length = 433 Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 3/103 (2%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ F G++ + +F T+IA+RL + + GL + LGI ++K + Sbjct: 99 ILHDSLMDLPG-FADLGLQPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSA 155 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +DWS L + YAA DV L L L+ G+ + A Sbjct: 156 ADWSYRPLPRDWRNYAALDVEVLIELENLMRRDLRAAGKDEWA 198 >gi|255550866|ref|XP_002516481.1| 3'-5' exonuclease, putative [Ricinus communis] gi|223544301|gb|EEF45822.1| 3'-5' exonuclease, putative [Ricinus communis] Length = 342 Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 18/168 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R LCI+Q++ D + G+ L K+ H Sbjct: 59 IGFDCEGVDLC-RHGTLCIMQIAFPDAIFLVDATQGGEMLLKACKPALESSYITKVIHDC 117 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128 + D L++ FG+++ VF T+IA L + L D+ +G Sbjct: 118 KRDSEALYFQFGIKLHNVFDTQIAYSLIEEQEGRTKLPDDYISFVGLLADPRYCGISYLE 177 Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + + Q S+ W+ LS+ ++ AA DV L + + +KL + Sbjct: 178 KEEVRLLLRQDSNFWTYRPLSELMIRAAADDVRFLLYIYHKMIKKLNQ 225 >gi|333029171|ref|ZP_08457232.1| 3'-5' exonuclease [Bacteroides coprosuis DSM 18011] gi|332739768|gb|EGJ70250.1| 3'-5' exonuclease [Bacteroides coprosuis DSM 18011] Length = 211 Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 8/71 (11%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 + Y G+KD +L+++ I ISKAQ+ S+W A +L+D Q +YAA+D LR+ Sbjct: 127 QEYVKHFGIKDKSLQKIYAILFKEKISKAQRLSNWEAVELTDAQQRYAATDA--WSCLRI 184 Query: 166 -QFTEKLQRLG 175 F E+L++ G Sbjct: 185 YNFLEELKQSG 195 >gi|226533369|ref|NP_001143931.1| hypothetical protein LOC100276743 [Zea mays] gi|194696098|gb|ACF82133.1| unknown [Zea mays] gi|195629726|gb|ACG36504.1| hypothetical protein [Zea mays] Length = 344 Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 73/189 (38%), Gaps = 30/189 (15%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R LCI+QL+ D + I G++ L + K+ H Sbjct: 58 IGFDCEGVDLC-RNGALCIMQLAFPDAVYLVDAIEGGKELIQACKPALESDHITKVIHDC 116 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL--------------KELLG 128 + D L++ FG+++ V T+IA L + Q G K K G Sbjct: 117 KRDSEALYFQFGIKLHNVMDTQIAYSLIQE-QEQKGKKKTSDDYNYISFVSLLADKRYCG 175 Query: 129 INISKA--------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG----- 175 I + Q + W+ LSD ++ A DV L + + EKL ++ Sbjct: 176 IPYPEKEEVRILLRQDPNFWTIRPLSDMMVRAATDDVRFLLNIYEKMMEKLNKVSLWRLA 235 Query: 176 -RSDLATSC 183 RS+L C Sbjct: 236 VRSELYCRC 244 >gi|310287702|ref|YP_003938960.1| Ribonuclease D [Bifidobacterium bifidum S17] gi|309251638|gb|ADO53386.1| Ribonuclease D [Bifidobacterium bifidum S17] Length = 428 Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 F G+ + +F T+IA+R+ + + GL + LG+ +K ++DWS L + Sbjct: 106 FADIGLAPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTFAKEHSAADWSYRPLPRDW 163 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 YAA DV L LR + +L+ G+ A + + Sbjct: 164 RNYAALDVELLIELRRKMQRELKVQGKDGWADEEFRYAL 202 >gi|222618694|gb|EEE54826.1| hypothetical protein OsJ_02264 [Oryza sativa Japonica Group] Length = 504 Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 30/187 (16%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R LCI+Q++ D + I G++ L E K+ H Sbjct: 222 IGFDCEGVDLC-RHGALCIMQIAFPDAVYLVDAIEGGKELIEACKPALESEYVTKVIHDC 280 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL------------GIN 130 + D L++ FG+++ V T+IA L Q G K E + G+ Sbjct: 281 KRDSEALYFQFGIKLHNVMDTQIAYSLLE---EQEGKKRGYDEYISFVSLLADPRYCGMA 337 Query: 131 ISKA--------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG------R 176 + Q + W+ LS+ ++ A DV L ++ + EKL ++ R Sbjct: 338 YPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSIHEKMMEKLSKVSLWRLSVR 397 Query: 177 SDLATSC 183 S+L C Sbjct: 398 SELYCRC 404 >gi|63054485|ref|NP_593004.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe 972h-] gi|6226742|sp|Q10146|RRP6_SCHPO RecName: Full=Exosome complex exonuclease rrp6; AltName: Full=Ribosomal RNA-processing protein 6 gi|159883898|emb|CAA93168.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe] Length = 777 Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 19/146 (13%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNA------PNLVGMLVDEK 74 IAVD E R +C++Q+S D VD + + + PN++ Sbjct: 240 IAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEALNVVFTNPNII------- 292 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+FH DI L FG+ V +F T A+++ HGL L++ + K Sbjct: 293 --KVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGF--EGHGLAFLLQKYCDYDADKR 348 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHL 160 Q +DW L E L+YA SD +L Sbjct: 349 YQMADWRIRPLPREMLKYAQSDTHYL 374 >gi|15223514|ref|NP_176027.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] gi|12321757|gb|AAG50917.1|AC069159_18 3'-5' exonuclease, putative [Arabidopsis thaliana] Length = 582 Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD-VVHLHALR 164 GL K++LG++++K +++SDW LS QL+YAA D V +H R Sbjct: 497 GLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHIFR 544 >gi|332195255|gb|AEE33376.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] Length = 589 Score = 39.7 bits (91), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD-VVHLHALR 164 GL K++LG++++K +++SDW LS QL+YAA D V +H R Sbjct: 483 GLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHIFR 530 >gi|115653109|ref|XP_001198503.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus purpuratus] gi|115960717|ref|XP_001189337.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus purpuratus] Length = 819 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 9/186 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E C++Q+S D VD + + + + L D K K+FH Sbjct: 286 IAVDLEHHSYRSYLGFTCLMQISTAEHDYVVDTLELRSELQM---LNDAFTDPKIVKVFH 342 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L G+ V +F T ASR H L L + K Q +DW Sbjct: 343 GANMDIDWLQRDLGLYVVNMFDTHQASR--SLGFPHHSLASLLSRYCQVEADKQYQLADW 400 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200 L +E L YA D +L L + T K + + R + + ++D++ + N Sbjct: 401 RIRPLPEEMLHYAREDTHYL--LYIYHTMKNELIKRGNDRRNLLRAVLDQSTRICVQRYN 458 Query: 201 VDIFSH 206 IF++ Sbjct: 459 KPIFTN 464 >gi|94987515|ref|YP_595448.1| ribonuclease D [Lawsonia intracellularis PHE/MN1-00] gi|94731764|emb|CAJ55127.1| Ribonuclease D [Lawsonia intracellularis PHE/MN1-00] Length = 198 Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 IA R GL+ +LG +SKA Q S+W +LS +Q+ YAA+D Sbjct: 131 IAEMARRLQLKAQGLRTLAANILGCRVSKAVQCSNWEKKELSPQQVLYAATD 182 >gi|330955743|gb|EGH56003.1| ribonuclease D [Pseudomonas syringae Cit 7] Length = 178 Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 25/40 (62%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 +E+L I++ K + SDW LS+ Q+ YAA D VHL L Sbjct: 1 QEVLDIDLPKGETRSDWLERPLSETQISYAAEDAVHLAEL 40 >gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500] Length = 1011 Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 16/174 (9%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQK--NAPNLVGMLVDEKR 75 V+ AVD E + +C++Q+S D VD + + + K N P + K Sbjct: 293 VEEFAVDLEAHNYRSFQGFVCLMQVSTRTEDFIVDTLVLRSHMKMLNVP-----FTNPKI 347 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H D+ L FG+ + +F T ASR+ + L L+ G++ +K Sbjct: 348 VKVLHGSESDVKWLQRDFGIYIVNMFDTGQASRILEYPS--ASLAFLLRFYCGVDANKKF 405 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 Q +DW + +E ++YA D +L + + +L G+ S N+LM+ Sbjct: 406 QLADWRIRPVPEEMIKYAREDTHYLLYIYDRLRNELVLKGK-----STNNYLME 454 >gi|325282020|ref|YP_004254562.1| 3'-5' exonuclease [Odoribacter splanchnicus DSM 20712] gi|324313829|gb|ADY34382.1| 3'-5' exonuclease [Odoribacter splanchnicus DSM 20712] Length = 203 Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKDN-----LKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 Y G++D + + G+ ISK Q++S+W A L++ Q++YAA+D Sbjct: 131 YAGYFGIEDKSFSKLMAIIFGVKISKRQRTSNWEAPALTEAQIRYAATD 179 >gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] Length = 704 Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLK 124 L + + E + H F+ + + +R + TK+ S+ L QHG +L+ Sbjct: 110 LANPQVEVVGHSLDFEQRWMLAKYNFPIRNLRDTKLMSQVYWAGLDPWLLKQHGKPHSLE 169 Query: 125 EL---LGINISKAQQSSDWSADD-----LSDEQLQYAASDV 157 + LGI+I K++Q+SDW D LS+ Q YAA+D Sbjct: 170 SVCLRLGISIDKSRQTSDWGWGDLGNGQLSNNQFNYAANDA 210 >gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona intestinalis] Length = 647 Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 58/140 (41%), Gaps = 7/140 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E + C++QLS D VD I + A + N N V + K+FH Sbjct: 86 IAVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTIALRA-ELNILNQV--FANPNIIKVFH 142 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L FG+ V +F T A+R +H L L + K Q +DW Sbjct: 143 GADSDIIWLQRDFGIYVVNLFDTGQAARALGL--QRHSLDYLLTHYCNVQADKKYQLADW 200 Query: 141 SADDLSDEQLQYAASDVVHL 160 L E L YA D +L Sbjct: 201 RIRPLPKEMLLYAQGDTHYL 220 >gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens] gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens] Length = 535 Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 3/143 (2%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + V AVD E + +C++Q+S D I+ A + L + D K K Sbjct: 256 KSVTEFAVDLEHHSYRSYQGFVCLMQISTRDADY-IVDTLALRSELWTLNEVFSDPKIIK 314 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H DI L F + V +F T A+RL + + L L + + +K Q Sbjct: 315 ILHGADSDIIWLQRDFAIYVVNMFDTGQAARLLQF--PRFSLSYLLLKYCNVTANKGLQL 372 Query: 138 SDWSADDLSDEQLQYAASDVVHL 160 +DW L E +QYA D +L Sbjct: 373 ADWRIRPLPQEMVQYAREDTHYL 395 >gi|50552133|ref|XP_503541.1| YALI0E04444p [Yarrowia lipolytica] gi|49649410|emb|CAG79122.1| YALI0E04444p [Yarrowia lipolytica] Length = 738 Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 8/139 (5%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + IA+D E + C+VQ+S D +D I + +N +L D K K+ Sbjct: 241 EEIAIDVEHHSMRTYYGITCLVQVSSREQDYIIDTIAL----RNLEIFNEVLTDPKIVKV 296 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H DI L FG+ + +F T A++ H L L+ SK Q S Sbjct: 297 LHGATMDIQWLQRDFGLYIVSLFDTFHAAQALGL--KGHSLAFLLQHYANFVTSKKYQLS 354 Query: 139 DWSADDLSDEQLQYAASDV 157 DW +S EQL YA +D Sbjct: 355 DWRIRPMSPEQLLYARADT 373 >gi|224142834|ref|XP_002324746.1| predicted protein [Populus trichocarpa] gi|222866180|gb|EEF03311.1| predicted protein [Populus trichocarpa] Length = 331 Score = 39.3 bits (90), Expect = 0.36, Method: Compositional matrix adjust. Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 23/193 (11%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGL------MPRRDRLCIVQLSPGDGTVDIIRIA 57 + +H P++ A +++ A +G + R LCI+QL+ D + I Sbjct: 22 VPIHVVTEPSQLPAEFLNPSAAKQLIIGFDCEGVDLCRHGTLCIMQLAFPDAIYLVDAIK 81 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 G+ L K+ H + D L++ FG+++ V T+IA + Sbjct: 82 GGESLIRACKPALESSHITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSQIEEQEGRT 141 Query: 118 GLKDNLKELLG-----------------INISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 L D+ +G + + Q W+ LS+ + AA DV L Sbjct: 142 RLPDDYISFVGLLADPRYCGISYLEKEEVRVLLRQDPMFWTYRPLSEMMIHAAADDVRFL 201 Query: 161 HALRLQFTEKLQR 173 + + EKL + Sbjct: 202 LRIYYKMMEKLNQ 214 >gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] Length = 662 Score = 39.3 bits (90), Expect = 0.36, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 K+ L R + L LG ++ K+ Q SDW L+ EQLQYAA+D + L Sbjct: 188 KLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDW-GKPLTQEQLQYAANDAAVVLPL 246 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 R F K+ +D L A++ L+G Sbjct: 247 RDTFRSKIIENQLADAIQVELGALARVAQMGLMG 280 >gi|40063706|gb|AAR38487.1| ribonuclease D, putative [uncultured marine bacterium 583] Length = 341 Score = 39.3 bits (90), Expect = 0.37, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 11/142 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+DTE + +LC+VQ++ +D++ I + L L K E I H Sbjct: 21 LAIDTEFKRINTYYPQLCLVQIATTHSLECIDVLSI----NDLEPLFEKLYRSKTEWIVH 76 Query: 81 YGRFDIAVLFYTFGVRVRPV--FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 R DI FY R+ PV F T+IA+ L Y Q + + L I + K+ Sbjct: 77 SARQDIEA-FYHLSKRI-PVSLFDTQIAASLL-NYPLQISYQLITEVLQDIQLDKSFTRF 133 Query: 139 DWSADDLSDEQLQYAASDVVHL 160 DW+ L + ++YA DV +L Sbjct: 134 DWTTRPLPADVVEYALDDVRYL 155 >gi|145544186|ref|XP_001457778.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425596|emb|CAK90381.1| unnamed protein product [Paramecium tetraurelia] Length = 389 Score = 39.3 bits (90), Expect = 0.38, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 30/167 (17%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A +D E R+C++Q+S G IA N + KIF+ Sbjct: 15 EAFGIDIEF-----SNKRICLIQISDGKEIYLFDPIAL---NLEQYMRDFFQNDAIKIFY 66 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASR---------LTRTYTNQHGLKDNLKELLGINI 131 G D+ L + + V K+ ++ L + Y +D+ K L Sbjct: 67 SGAQDLKWLKTEYQIEVNNYCDLKVLAQKEPDQSLIALWKKYCGVQFERDDKKRL----- 121 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALR----LQFTEKLQRL 174 Q SDW A LS EQL YAA D HL LR Q+TE+ ++ Sbjct: 122 ----QRSDWFARPLSQEQLFYAALDCKHLIMLRDILLQQYTEEEKKF 164 >gi|260906565|ref|ZP_05914887.1| putative ribonuclease D [Brevibacterium linens BL2] Length = 384 Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Query: 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 G++ +F T++A+R+ + GL + LG+ ++K ++DWS L E L YA Sbjct: 99 GMQPEVLFDTELAARML--GWEKFGLAAVAERTLGVRLAKEHSAADWSKRPLPKEWLNYA 156 Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 A DV L +R E L + + A L+D Sbjct: 157 ALDVEVLLPIRDILHEALIEADKWEFARQEFEHLLD 192 >gi|56460926|ref|YP_156207.1| ribonuclease D [Idiomarina loihiensis L2TR] gi|56179936|gb|AAV82658.1| Ribonuclease D [Idiomarina loihiensis L2TR] Length = 390 Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 17/146 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 A+D+E + +L ++Q+ +GT +I A P L ++ ++ E + H G Sbjct: 36 FAIDSEFVRERTYYAQLGLLQIH-ANGTTAVIDPLADIDLEP-LWQLISGDEVETVLHAG 93 Query: 83 RFDIAVLFY-TFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE-------LLGINISKA 134 DI + F + G + + +F ++IA+ GL D++ G+ + K+ Sbjct: 94 GEDIELFFQQSSGRQPKQIFDSQIAAGFC-------GLGDSMGYARLVDALFDGVELDKS 146 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHL 160 ++W LSDEQL YAA+D +L Sbjct: 147 LSRTNWLKRPLSDEQLDYAAADASYL 172 >gi|313837100|gb|EFS74814.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA2] gi|314927873|gb|EFS91704.1| 3'-5' exonuclease [Propionibacterium acnes HL044PA1] gi|314971873|gb|EFT15971.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA3] gi|328907332|gb|EGG27098.1| 3'-5' exonuclease [Propionibacterium sp. P08] Length = 412 Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 7/144 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIA-AGQKNAPNLVGMLVDEKREKIFH 80 +A+DTE R C++QL G GT + +A +G + L L + I H Sbjct: 38 VAIDTERAHGFRYSPRACLIQLRREGSGTHLVDPLAFSGNTDLKPLAEALAGT--QWILH 95 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L + +R +F T++A RL + GL ++ G+ + K +SDW Sbjct: 96 AAIQDMPCLAMS-DLRPDDLFDTELAGRLLNL--PRVGLGPMIEHYCGVTLLKEHSASDW 152 Query: 141 SADDLSDEQLQYAASDVVHLHALR 164 S L + L YAA DV L LR Sbjct: 153 SRRPLPQDCLVYAALDVELLTDLR 176 >gi|269219399|ref|ZP_06163253.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332] gi|269211192|gb|EEZ77532.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332] Length = 411 Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ L G +F T++A L + L+ + E+LG ++K Sbjct: 92 ILHAADQDLPCL-RELGFNPPEIFDTEVAGILL--GFERISLQAEVAEVLGYGLAKEHSM 148 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 +DWS L+ E YAA DV L LR + T L+ GR + C Sbjct: 149 ADWSERPLAPELRAYAALDVELLIELRERLTAMLRAAGRLEWLHEECE 196 >gi|256395899|ref|YP_003117463.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928] gi|256362125|gb|ACU75622.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928] Length = 443 Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 23/172 (13%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIA-----AGQKNAPNLVGMLVDEKRE 76 +AVD E R +VQ+ G GT I IA A + P L G E Sbjct: 60 VAVDAERASGYKYSQRAYLVQIRRQGAGTFLIDPIACPDLSALAGDGPALAGA------E 113 Query: 77 KIFHYGRFDIAVLFYTFGVRV---RP-----VFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + H D+A L G+ RP +F T++ +RL + GL + E+L Sbjct: 114 WVLHAASQDLACL-AEVGMHPPARRPDGTGGLFDTELGARLG--GHERVGLGPLVAEVLK 170 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + K +SDWS L + L+YAA DV L +R ++L+ G+ D A Sbjct: 171 LELEKGHSASDWSTRPLPEAWLRYAALDVEVLVEVRDIIEDELRGAGKLDWA 222 >gi|158301896|ref|XP_321572.4| AGAP001549-PA [Anopheles gambiae str. PEST] gi|157012692|gb|EAA01810.4| AGAP001549-PA [Anopheles gambiae str. PEST] Length = 769 Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 4/139 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + + D E + +R + ++QL+ G +IR+ + L +L D+ K+ Sbjct: 75 NVLGFDCEWVSNQGKRRPVALLQLASHRGLCALIRLCMINRIPQELYDLLNDDNIIKVGV 134 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SS 138 D VL + ++V + + R G+ E+LG+ + K + S Sbjct: 135 SPYEDARVLREDYRLKVESTLDLRYMAE--RAGLEPLGIARLANEVLGLTLDKHWKVRCS 192 Query: 139 DWSADDLSDEQLQYAASDV 157 DW + +LSD Q++YAASD Sbjct: 193 DWESPELSDRQIKYAASDA 211 >gi|262202194|ref|YP_003273402.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247] gi|262085541|gb|ACY21509.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247] Length = 447 Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 11/170 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKR--EKIF 79 +AVDTE R ++Q+ G GT + I + P+ + ++D R E + Sbjct: 71 VAVDTERASGYRYSQRAYLIQIRRRGAGTFLLDPI-----DEPDALAPVIDALRGPEWVL 125 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G ++ T++A RL + L + E LG+ + K ++D Sbjct: 126 HAADQDLPCL-RELGFVCAELYDTELAGRLL--GLAKVNLAAMVAEFLGLGLRKGHGAAD 182 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 WS L D+ L YAA DV L LR L G+ A ++++ Sbjct: 183 WSRRPLPDDWLNYAALDVEVLVELRDAMDAALAAAGKDRWAREEFAYVLN 232 >gi|118566802|gb|ABL01720.1| unknown [Salmonella enterica subsp. enterica serovar Typhi] Length = 151 Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 36/74 (48%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G ++E G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G Sbjct: 20 WGFASMVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGW 79 Query: 177 SDLATSCCNFLMDR 190 A C + R Sbjct: 80 LPAALDECRLMQQR 93 >gi|310792006|gb|EFQ27533.1| 3'-5' exonuclease [Glomerella graminicola M1.001] Length = 882 Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH D+ L G+ V +F T +A + + Q L LK+ + + K Q Sbjct: 297 KVFHGAFMDMVWLQRDLGLYVNGLFDTGMACEVL--HYPQKSLAFLLKKFVNFDADKKYQ 354 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW LS+E L YA SD +L Sbjct: 355 LADWRVRPLSEEMLYYARSDTHYL 378 >gi|221052342|ref|XP_002257747.1| dna binding protein [Plasmodium knowlesi strain H] gi|193807578|emb|CAQ38083.1| dna binding protein, putative [Plasmodium knowlesi strain H] Length = 470 Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQK 61 D E ++ A++ + + L + RR+ LC++QLS + + I + Sbjct: 111 DFIKEIKSKGFTAMSTEGKFLKRVQRRNYPPWSEKKTLCLIQLSSKNLCF-VFNINKLKG 169 Query: 62 NAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P V ++ DEK +K+ H R D +F +++R F + + Y L+ Sbjct: 170 KIPMCVKEIMEDEKIKKVCHDIRND-KDMFEDQDIQIRNTF--DLYDFCMKNYLYPPSLQ 226 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 +K L N+ K + S+W + DL +EQ+ YAA+D Sbjct: 227 FLVKLFLKKNLEKHFRLSNWLSHDLKEEQILYAAAD 262 >gi|189467792|ref|ZP_03016577.1| hypothetical protein BACINT_04184 [Bacteroides intestinalis DSM 17393] gi|189436056|gb|EDV05041.1| hypothetical protein BACINT_04184 [Bacteroides intestinalis DSM 17393] Length = 210 Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 5/51 (9%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 + Y G++D +L+++ GI ISK+Q+ S+W A+ L++ Q QYAA+D Sbjct: 127 QEYVRMFGIQDKSLQKIYGILFGEKISKSQRLSNWEAEHLTEPQKQYAATD 177 >gi|115689891|ref|XP_001200735.1| PREDICTED: similar to exosome component 10, partial [Strongylocentrotus purpuratus] Length = 376 Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 54/140 (38%), Gaps = 7/140 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E C++Q+S D VD + + + + L D K K+FH Sbjct: 140 IAVDLEHHSYRSYLGFTCLMQISTAEHDYVVDTLELRSELQM---LNDAFTDPKIVKVFH 196 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D L G+ V +F T ASR H L L + K Q +DW Sbjct: 197 GANMDFDWLQRDLGLYVVNMFDTHQASR--SLGFPHHSLASLLSRYCQVEADKQYQLADW 254 Query: 141 SADDLSDEQLQYAASDVVHL 160 L +E L YA D +L Sbjct: 255 RIRPLPEEMLHYAREDTHYL 274 >gi|221117975|ref|XP_002165683.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 608 Score = 38.9 bits (89), Expect = 0.47, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 18/160 (11%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA--PNLVGMLV 71 EC + + +D E + + + ++QLS G T I RI N P + L+ Sbjct: 104 ECFQENLHFVGLDCEWVS--NEKSHVALIQLSLG-TTCLIYRIPQLSINEEFPFQLKKLL 160 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQH----------GLK 120 + + F ++ ++ GV VR +I A R T ++ GL+ Sbjct: 161 ENPKILKFGVAIYEDVRRLHSHGVAVRGFVDLRILAQRCLPFITTKNSEDENKYKGMGLQ 220 Query: 121 DNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVV 158 +LL +N+ K++ Q S+W A DLS EQ+ YAA D + Sbjct: 221 SLSYKLLNMNLDKSRNIQCSNWHATDLSKEQILYAAKDAI 260 >gi|308484203|ref|XP_003104302.1| hypothetical protein CRE_24938 [Caenorhabditis remanei] gi|308258271|gb|EFP02224.1| hypothetical protein CRE_24938 [Caenorhabditis remanei] Length = 179 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 LKD + E+ G+ + K + S+W +L +Q+ YAA D V LH L Sbjct: 105 SLKDYVHEVTGLEVLKTETMSNWRVLNLRKDQIWYAAMDTVSLHYL 150 >gi|221124179|ref|XP_002154311.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 608 Score = 38.9 bits (89), Expect = 0.48, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 18/160 (11%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA--PNLVGMLV 71 EC + + +D E + + + ++QLS G T I RI N P + L+ Sbjct: 104 ECFQENLHFVGLDCEWVS--NEKSHVALIQLSLG-TTCLIYRIPQLSINEEFPFQLKKLL 160 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQH----------GLK 120 + + F ++ ++ GV VR +I A R T ++ GL+ Sbjct: 161 ENPKILKFGVAIYEDVRRLHSHGVAVRGFVDLRILAQRCLPFITTKNSEDENKYKGMGLQ 220 Query: 121 DNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVV 158 +LL +N+ K++ Q S+W A DLS EQ+ YAA D + Sbjct: 221 SLSYKLLNMNLDKSRNIQCSNWHATDLSKEQILYAAKDAI 260 >gi|313205201|ref|YP_004043858.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4] gi|312444517|gb|ADQ80873.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4] Length = 231 Score = 38.9 bits (89), Expect = 0.49, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 10/149 (6%) Query: 12 PAECAARYVDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 PA R + +DTET R ++ +VQ+S D + R+ A L Sbjct: 34 PAIAELRKSKVVGIDTETKPSFTRGTYHKVSLVQISTLDHCF-LFRLNKIDFPAA-LAEF 91 Query: 70 LVDEKREKIFHYGRFDIAVL--FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 L DE +KI R D+ L + F +P C I + + + GL+ L Sbjct: 92 LSDENIKKIGLSLRDDLNGLNKHHAF----KPANCVDIQTIVQSYGILELGLQKIYAILF 147 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASD 156 G ISK+Q+ ++W +L+++Q +YAA+D Sbjct: 148 GKKISKSQRLTNWENPELTEQQQRYAATD 176 >gi|225442373|ref|XP_002281479.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 336 Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust. Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 18/166 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R LCI+QL+ D + I G+K L K+ H Sbjct: 57 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGEKLMKACKPALESSYITKVIHDC 115 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128 + D L++ FG+++ V ++IA L + D+ +G Sbjct: 116 KRDSEALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRSPDDYISFVGLLADPRYCGISYLE 175 Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + Q W+ LS+ ++ AA DV L + + E+L Sbjct: 176 KKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPYIYYKMMEEL 221 >gi|297743128|emb|CBI35995.3| unnamed protein product [Vitis vinifera] Length = 367 Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust. Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 18/166 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R LCI+QL+ D + I G+K L K+ H Sbjct: 88 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGEKLMKACKPALESSYITKVIHDC 146 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128 + D L++ FG+++ V ++IA L + D+ +G Sbjct: 147 KRDSEALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRSPDDYISFVGLLADPRYCGISYLE 206 Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + Q W+ LS+ ++ AA DV L + + E+L Sbjct: 207 KKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPYIYYKMMEEL 252 >gi|126328720|ref|XP_001364275.1| PREDICTED: similar to exosome component 10, isoform 2 [Monodelphis domestica] Length = 836 Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FG+ V +F T A+R+ +H L LK + +K Q Sbjct: 339 KVFHGADMDIEWLQKDFGLYVVNMFDTHQAARILNL--GRHSLDHLLKLYCNVESNKQYQ 396 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L +E YA D +L Sbjct: 397 LADWRIRPLPEEMFNYARHDTHYL 420 >gi|224538568|ref|ZP_03679107.1| hypothetical protein BACCELL_03462 [Bacteroides cellulosilyticus DSM 14838] gi|224519812|gb|EEF88917.1| hypothetical protein BACCELL_03462 [Bacteroides cellulosilyticus DSM 14838] Length = 215 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 5/51 (9%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 + Y G++D +L+++ GI ISK+Q+ S+W A+ L++ Q QYAA+D Sbjct: 127 QEYVRMFGIQDKSLQKIYGILFGEKISKSQRLSNWEAEHLTEPQKQYAATD 177 >gi|72388613|gb|AAZ67949.1| At5g24340 [Arabidopsis thaliana] gi|72388615|gb|AAZ67950.1| At5g24340 [Arabidopsis thaliana] gi|72388617|gb|AAZ67951.1| At5g24340 [Arabidopsis thaliana] gi|72388619|gb|AAZ67952.1| At5g24340 [Arabidopsis thaliana] Length = 163 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 24/33 (72%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 KE+L I++SK Q SDWS L++EQ YAA+D Sbjct: 35 KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 67 >gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis] Length = 550 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FG+ V +F T ASR +H L L + K Q Sbjct: 330 KVFHGADSDIEWLQRDFGLYVVRLFDTHQASRALNL--ARHSLDHLLTHFCNVASDKRYQ 387 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L +E +QYA +D +L Sbjct: 388 LADWRIRPLPEEMVQYARADTHYL 411 >gi|297848138|ref|XP_002891950.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337792|gb|EFH68209.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 569 Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD-VVHLHALR 164 GL K++LG++++K +++SDW L+ QL+YAA D V +H R Sbjct: 484 GLAGLTKKILGVSLNKTRRNSDWEQRPLTQNQLEYAALDAAVLIHIFR 531 >gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 996 Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 58/132 (43%), Gaps = 26/132 (19%) Query: 23 IAVDTETLGLMPRR------------DRLCIVQL---SPGDGTVDIIRIAA---GQ---- 60 +AVDTET L P R C + L PGDG D+ AA GQ Sbjct: 407 VAVDTETTSLDPMSCELVGVSLAITPGRACYIPLQHREPGDG--DLFGGAALLQGQIPLD 464 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K L +L D+ KI H ++D+ VL +GV V P+ T + S T N HGL Sbjct: 465 KAIATLKPLLEDDAVLKIAHNMKYDLLVL-ARYGVDVAPIEDTMLISYTLDTGRNNHGLD 523 Query: 121 D-NLKELLGINI 131 + LK L NI Sbjct: 524 ELTLKHLGHENI 535 >gi|126328718|ref|XP_001364197.1| PREDICTED: similar to exosome component 10, isoform 1 [Monodelphis domestica] Length = 861 Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FG+ V +F T A+R+ +H L LK + +K Q Sbjct: 339 KVFHGADMDIEWLQKDFGLYVVNMFDTHQAARILNL--GRHSLDHLLKLYCNVESNKQYQ 396 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L +E YA D +L Sbjct: 397 LADWRIRPLPEEMFNYARHDTHYL 420 >gi|320352196|ref|YP_004193535.1| 3'-5' exonuclease [Desulfobulbus propionicus DSM 2032] gi|320120698|gb|ADW16244.1| 3'-5' exonuclease [Desulfobulbus propionicus DSM 2032] Length = 210 Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 31/47 (65%) Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 R + HGL+ + G+ ISK+ ++++W+ +L+ +Q++YAA+D Sbjct: 139 RRGVHNHGLRGLAALVCGVRISKSARTTNWANAELTPQQIRYAATDA 185 >gi|296139599|ref|YP_003646842.1| 3'-5' exonuclease [Tsukamurella paurometabola DSM 20162] gi|296027733|gb|ADG78503.1| 3'-5' exonuclease [Tsukamurella paurometabola DSM 20162] Length = 404 Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 10/168 (5%) Query: 13 AECAA---RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 AECAA R IA+DTE R ++Q+ G G + I + AP + Sbjct: 32 AECAAALRRGTGPIALDTERASGFTYSSRAYLIQIKRTGSGLFLLDPIHEPEGLAPVIEA 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + E + H D+ L G +F T++A RL + L E G Sbjct: 92 L---RGVEWVLHAADQDLPCL-RDDGFVCDALFDTELAGRLL--GEPRVNLAAMTSEFTG 145 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++K ++DWS L + L YAA DV L LR + E+L G+ Sbjct: 146 YALAKGHGAADWSTRPLPHDWLNYAALDVELLVDLRDEAYERLDAAGK 193 >gi|72388593|gb|AAZ67939.1| At5g24340 [Arabidopsis thaliana] gi|72388595|gb|AAZ67940.1| At5g24340 [Arabidopsis thaliana] gi|72388597|gb|AAZ67941.1| At5g24340 [Arabidopsis thaliana] gi|72388599|gb|AAZ67942.1| At5g24340 [Arabidopsis thaliana] gi|72388601|gb|AAZ67943.1| At5g24340 [Arabidopsis thaliana] gi|72388603|gb|AAZ67944.1| At5g24340 [Arabidopsis thaliana] gi|72388609|gb|AAZ67947.1| At5g24340 [Arabidopsis thaliana] gi|72388611|gb|AAZ67948.1| At5g24340 [Arabidopsis thaliana] Length = 163 Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 24/33 (72%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 KE+L I++SK Q SDWS L++EQ YAA+D Sbjct: 35 KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 67 >gi|72388605|gb|AAZ67945.1| At5g24340 [Arabidopsis thaliana] gi|72388607|gb|AAZ67946.1| At5g24340 [Arabidopsis thaliana] Length = 163 Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 24/33 (72%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 KE+L I++SK Q SDWS L++EQ YAA+D Sbjct: 35 KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 67 >gi|329962096|ref|ZP_08300107.1| 3'-5' exonuclease [Bacteroides fluxus YIT 12057] gi|328530744|gb|EGF57602.1| 3'-5' exonuclease [Bacteroides fluxus YIT 12057] Length = 231 Score = 38.5 bits (88), Expect = 0.60, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 9/72 (12%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 + Y G++D +L+++ GI ISK+Q+ S+W AD LS+ Q YAA+D L Sbjct: 127 QEYVRTFGIQDKSLQKIYGILFGEKISKSQRLSNWEADVLSESQKLYAATDAWAC----L 182 Query: 166 QFTEKLQRLGRS 177 KLQ L R+ Sbjct: 183 NIYNKLQELKRT 194 >gi|255325116|ref|ZP_05366222.1| ribonuclease D [Corynebacterium tuberculostearicum SK141] gi|255297681|gb|EET76992.1| ribonuclease D [Corynebacterium tuberculostearicum SK141] Length = 414 Score = 38.5 bits (88), Expect = 0.60, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 6/136 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A+DTE DR +VQ+ G GT ++ G + V E I H Sbjct: 36 FAIDTERASGYRYDDRAFVVQIRRRGAGT--MLFAPEGHREELTAALAPVLNGTEWIIHA 93 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L + G+ +F T++A+RL + L + EL + + K +DWS Sbjct: 94 AHSDLPCLGW-LGLFPGSIFDTELAARLA--GFERPNLGTMVAELFDVELEKGYGDADWS 150 Query: 142 ADDLSDEQLQYAASDV 157 LS+E YAA DV Sbjct: 151 TPQLSEELKAYAALDV 166 >gi|308462810|ref|XP_003093685.1| hypothetical protein CRE_23111 [Caenorhabditis remanei] gi|308249485|gb|EFO93437.1| hypothetical protein CRE_23111 [Caenorhabditis remanei] Length = 324 Score = 38.5 bits (88), Expect = 0.63, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR----LQFTEKLQRLGRSDLA 180 + ISK++ S+W L D+Q+QYAA D + LH + L ++ R R+D++ Sbjct: 238 VPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNINIGTALDWSYSPPRPSRTDIS 293 >gi|289740869|gb|ADD19182.1| putative 3'-5' exonuclease [Glossina morsitans morsitans] Length = 568 Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 4/136 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + D E + + R + ++QL G + R+ ++ +L +L DE+ K+ Sbjct: 80 LGFDCEWVTVSGSRRPVALLQLCSNRGYCALFRLCCIRQIPKSLRDLLADEEVIKVGVDP 139 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDW 140 +D L +GV V F + + T GL +L + + K + S+W Sbjct: 140 GYDAQKLAQDYGVGVASTFDLRYLA--TMVGRKPEGLAKLSLSVLKVTLDKHWRLSCSNW 197 Query: 141 SADDLSDEQLQYAASD 156 A DL+++Q++YAA+D Sbjct: 198 EAKDLTEKQIEYAAND 213 >gi|332886278|gb|EGK06522.1| hypothetical protein HMPREF9456_00396 [Dysgonomonas mossii DSM 22836] Length = 197 Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 5/51 (9%) Query: 111 RTYTNQHGLKDN-LKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 +++ +G++DN L+ + GI ISK Q+ S+W D LSD Q YAA D Sbjct: 125 QSFVKDYGIEDNGLQRIYGILFEKRISKGQRLSNWEVDVLSDSQKMYAALD 175 >gi|327537477|gb|EGF24200.1| ribonuclease D [Rhodopirellula baltica WH47] Length = 433 Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 8/159 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK----- 77 I DTE + R LC+VQ++ G I G + +L D++ E Sbjct: 54 IGFDTEFVSEDCYRPELCLVQVAAGKHLAVIDPYTVG--DTKPFWDILTDDQIEPGSRVV 111 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H R +I + G + +F T++A+ L +++L+G + K + Sbjct: 112 IAHAAREEIRFAYRYSGRPIAGLFDTQLAAGFV-GIEYPASLATLVQKLVGQTLPKGETR 170 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++W L+ +QL YA DV L + + ++ L R Sbjct: 171 TNWRHRPLTKDQLTYALHDVTTLAEMHSKLIADVKALDR 209 >gi|154494239|ref|ZP_02033559.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC 43184] gi|154086101|gb|EDN85146.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC 43184] Length = 193 Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 5/51 (9%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 + Y Q G++D +L+++ I ISK Q+ S+W AD LSD Q +YAA D Sbjct: 129 QNYVGQFGIEDASLQKIYAILFNKKISKGQRLSNWEADVLSDAQKKYAALD 179 >gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio] Length = 500 Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FG+ V +F T A+R N L LK ++ K Q Sbjct: 361 KVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRN--SLDHLLKVYCDVSSDKRYQ 418 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L DE L+YA +D +L Sbjct: 419 LADWRIRPLPDEMLKYAQADTHYL 442 >gi|195644322|gb|ACG41629.1| hypothetical protein [Zea mays] Length = 202 Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156 + A R+ R Q GL+ ++ ++G+N+ K Q+ S W A LS EQ++YA D Sbjct: 132 RXAERMXRPDLRQAGLRAXVQVVMGVNLVKPQRVTMSRWDASCLSYEQIKYACID 186 >gi|157874025|ref|XP_001685508.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128580|emb|CAJ08712.1| hypothetical protein LMJF_32_1880 [Leishmania major strain Friedlin] Length = 753 Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 32/195 (16%) Query: 17 ARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVD 72 ARY D IA+D E L R +CI+ L+ +D++ + A A + + +++ Sbjct: 541 ARYSDTLTIALDLEGRSLG-RMGSICIITLATYSTVYIIDVVMLGAEALYAGSPLKRVLE 599 Query: 73 EKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-------------- 117 + K+ R D LF+ +GVR++ V +I+S T+ H Sbjct: 600 SRDIMKLMFDCRADCDALFFLYGVRLQNVCDLQISSCFALFPTSPHLPGMKSVFLVLGLF 659 Query: 118 -----GLKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKL 171 G+K+ + L + S DW + L+D +QY A DV + A +L + + Sbjct: 660 TDEDAGIKNAGRHLFN---PRCGGSFDWWEERPLTDVLVQYCAVDVKYFFAAQLILQDHV 716 Query: 172 Q---RLGRSDLATSC 183 + RLG + LA+ C Sbjct: 717 EQGCRLGEARLASVC 731 >gi|212704372|ref|ZP_03312500.1| hypothetical protein DESPIG_02427 [Desulfovibrio piger ATCC 29098] gi|212672197|gb|EEB32680.1| hypothetical protein DESPIG_02427 [Desulfovibrio piger ATCC 29098] Length = 201 Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 28/53 (52%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 GL+ L G ISK Q S+WS +LS Q+ YAA+D A+ L+ E Sbjct: 141 QGLRTLAANLFGQRISKGPQCSNWSVMELSKRQVIYAATDAWIGRAIYLRMRE 193 >gi|237808321|ref|YP_002892761.1| ribonuclease D [Tolumonas auensis DSM 9187] gi|237500582|gb|ACQ93175.1| ribonuclease D [Tolumonas auensis DSM 9187] Length = 365 Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 9/159 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIF 79 + +DTE + + +L ++QL + D +D + I N+ NL+ + + R +F Sbjct: 25 LLLDTEFIRVSTYFPKLGLLQLHLNAVDYLIDPLAI-----NSINLLWDAIFSDHRLFVF 79 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H + D+ VL VF T++A+ Y G ++++ + ++K Q +D Sbjct: 80 HSCKEDLDVLQVCAQKLPGRVFDTQVAAAFL-GYGASLGYAGLVEKVCDVTVAKDQTLTD 138 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 W A L+ Q YAA DV +L L +++L G+++ Sbjct: 139 WLARPLTAAQKLYAAKDVSYLQYLYDHLSQELNTTGKTE 177 >gi|157876102|ref|XP_001686412.1| exosome subunit rrp6p homologue [Leishmania major strain Friedlin] gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain Friedlin] Length = 742 Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 17/188 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E + C++Q+S D VD +++ + + L + ++ K+ H Sbjct: 254 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL---RSSMGALAPVFLNPSILKVLH 310 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI L F + V +F T +A +T + L + + ++K Q++DW Sbjct: 311 GAREDIRWLQKDFSLYVVNLFDTGVA---LQTLHMPYSLAFAVDHFCQVKLNKKYQTADW 367 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-----GRSDLATSCCNFLMDRAELDL 195 LS E + YA D L L ++L+ L GR+ + + + + +L L Sbjct: 368 RVRPLSAEMVHYARQDTHFL----LYVHDRLKALLLNSEGRASIGSVLVHVYNESKQLSL 423 Query: 196 LGWENVDI 203 +E ++ Sbjct: 424 QIYEKPNV 431 >gi|167555226|ref|NP_001107878.1| exonuclease 3'-5' domain-containing protein 2 [Danio rerio] gi|166796362|gb|AAI59254.1| Zgc:175195 protein [Danio rerio] Length = 617 Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 114 TNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD-----VVHLHALRLQ 166 TN LK ++LL + + K+ + SDW A++LS EQ+ YAA D + H L + Sbjct: 207 TNGLSLKSLAEDLLNVTLDKSVELRCSDWEAEELSPEQITYAARDAQISIALFFHLLGMN 266 Query: 167 FTEKLQRLGRSDL--ATSCCNFLMD 189 L G + ++CC L+D Sbjct: 267 TERHLPAEGEAVFLHLSACCQGLVD 291 >gi|325186923|emb|CCA21467.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 1069 Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 GL D K LG + K Q SDW LS Q++YAA D L L E+L+ +G Sbjct: 1013 GLSDLAKSSLGFPLCKRMQRSDWEQRPLSSAQIEYAALDAYVL----LMIYERLREIG 1066 >gi|224088954|ref|XP_002308585.1| predicted protein [Populus trichocarpa] gi|222854561|gb|EEE92108.1| predicted protein [Populus trichocarpa] Length = 378 Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 18/168 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R LCI+QL+ D + I G+ L K+ H Sbjct: 55 IGFDCEGVNLC-RHGALCIMQLAFPDAIYLVDAINGGESLIKVCKPALESSYITKVIHDC 113 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128 + D L++ FG+++ V T+IA L + L + +G Sbjct: 114 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRTRLPGDYISFVGLLADPRYCGVSYLE 173 Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + + Q W+ LS+ ++ AA DV L + + EKL Sbjct: 174 KEEVRVLLRQDPMFWTYRPLSEMMIRAAADDVRFLLCIYYKMMEKLNE 221 >gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana] Length = 237 Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 7/156 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 AVDTE L ++Q+S D VD I A L + D K+F Sbjct: 76 VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTI---ALHDVMSILRPVFSDPNICKVF 132 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L F + V +F T A + Q L L+ + G+ +K Q D Sbjct: 133 HGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKLLQRED 190 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 W LS+E ++YA +D +L + T +L++L Sbjct: 191 WRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 226 >gi|311739578|ref|ZP_07713413.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035] gi|311305394|gb|EFQ81462.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035] Length = 414 Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 10/138 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML--VDEKREKIF 79 A+DTE DR +VQ+ G GT+ + A + + L L V E I Sbjct: 36 FAIDTERASGYRYDDRAFVVQIRRRGAGTM----LFAPEGHREELTAALAPVLNGAEWII 91 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L + G+ +F T++A+RL + L + EL + + K +D Sbjct: 92 HAAHSDLPCLGW-LGLFPGSIFDTELAARLA--GFERPNLGTMVGELFDVELEKGYGDAD 148 Query: 140 WSADDLSDEQLQYAASDV 157 WS LS+E YAA DV Sbjct: 149 WSTPQLSEELKAYAALDV 166 >gi|72388621|gb|AAZ67953.1| At5g24340-like protein [Arabidopsis lyrata] Length = 163 Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 24/33 (72%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 KE+L I++SK Q SDWS L++EQ YAA+D Sbjct: 35 KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 67 >gi|15237941|ref|NP_197822.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] gi|10177895|dbj|BAB11227.1| unnamed protein product [Arabidopsis thaliana] gi|30102678|gb|AAP21257.1| At5g24340 [Arabidopsis thaliana] gi|110743600|dbj|BAE99637.1| hypothetical protein [Arabidopsis thaliana] gi|332005912|gb|AED93295.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] Length = 505 Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 24/33 (72%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 KE+L I++SK Q SDWS L++EQ YAA+D Sbjct: 158 KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 190 >gi|297808445|ref|XP_002872106.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp. lyrata] gi|297317943|gb|EFH48365.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp. lyrata] Length = 508 Score = 38.1 bits (87), Expect = 0.80, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 24/33 (72%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 KE+L I++SK Q SDWS L++EQ YAA+D Sbjct: 161 KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 193 >gi|303325512|ref|ZP_07355955.1| 3'- 5' exonuclease domain protein [Desulfovibrio sp. 3_1_syn3] gi|302863428|gb|EFL86359.1| 3'- 5' exonuclease domain protein [Desulfovibrio sp. 3_1_syn3] Length = 216 Score = 38.1 bits (87), Expect = 0.81, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 23/41 (56%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 GL+ L G ISK Q S+WS +LS Q+ YAA+D Sbjct: 137 QGLRTLAANLFGWRISKGSQCSNWSLMELSQRQIAYAATDA 177 >gi|167765134|ref|ZP_02437247.1| hypothetical protein BACSTE_03520 [Bacteroides stercoris ATCC 43183] gi|167696762|gb|EDS13341.1| hypothetical protein BACSTE_03520 [Bacteroides stercoris ATCC 43183] Length = 210 Score = 38.1 bits (87), Expect = 0.81, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L G ISK+Q+ S+W AD L+ Q QYAA+D L +LQ L R+ Sbjct: 147 LFGEKISKSQRLSNWEADVLTPSQQQYAATDAWAC----LNIYNRLQELKRT 194 >gi|255549190|ref|XP_002515649.1| 3-5 exonuclease, putative [Ricinus communis] gi|223545192|gb|EEF46701.1| 3-5 exonuclease, putative [Ricinus communis] Length = 523 Score = 38.1 bits (87), Expect = 0.82, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 23/32 (71%) Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 E+LGI++SK Q SDWS L++EQ YAA D Sbjct: 167 EVLGISLSKELQCSDWSHRPLTEEQKAYAAID 198 >gi|170112858|ref|XP_001887630.1| predicted protein [Laccaria bicolor S238N-H82] gi|164637532|gb|EDR01817.1| predicted protein [Laccaria bicolor S238N-H82] Length = 854 Score = 38.1 bits (87), Expect = 0.82, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 7/137 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E LC++Q+S D VD++ + + L + D K K+ H Sbjct: 264 IAVDLEHHSYRSYTGFLCLMQISDRENDWIVDLLAL---RDEIEQLNEIFTDPKIVKVLH 320 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L F V + +F T AS+L +HGL + L+ K Q +DW Sbjct: 321 GAESDVVWLQQDFNVYIVNLFDTFHASKLLDF--PRHGLANLLEMYCDYIPDKRYQLADW 378 Query: 141 SADDLSDEQLQYAASDV 157 L E L YA SD Sbjct: 379 RIRPLPQEMLDYARSDT 395 >gi|156095069|ref|XP_001613570.1| DNA binding protein [Plasmodium vivax SaI-1] gi|148802444|gb|EDL43843.1| DNA binding protein, putative [Plasmodium vivax] Length = 481 Score = 38.1 bits (87), Expect = 0.82, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 7/127 (5%) Query: 34 PRRDR--LCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLF 90 P R++ LC++QLS + + I + P V ++ DEK K+ H R D +F Sbjct: 133 PCREKKTLCLIQLSSKELCF-VFNINKLKGKIPMCVKEIMEDEKIRKVCHDIRND-QDMF 190 Query: 91 YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL 150 V++R F + +++ L+ +K L N+ K + S+W +DDL +EQ+ Sbjct: 191 LDQHVQIRNSF--DLYDFCMQSFLYPPSLQFLVKLFLKKNLEKQFRLSNWLSDDLREEQI 248 Query: 151 QYAASDV 157 YAA+D Sbjct: 249 LYAAADA 255 >gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana] Length = 892 Score = 38.1 bits (87), Expect = 0.84, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 2/105 (1%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH D+ L F + V +F T A + Q L L+ + G+ +K Q Sbjct: 194 KVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKLLQ 251 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 DW LS+E ++YA +D +L + T +L++L D ++ Sbjct: 252 REDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSS 296 >gi|283458265|ref|YP_003362884.1| ribonuclease D [Rothia mucilaginosa DY-18] gi|283134299|dbj|BAI65064.1| ribonuclease D [Rothia mucilaginosa DY-18] Length = 449 Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 93 FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 G+R +F T++ +RL + L ++ELLG ++K DWS L + L Y Sbjct: 152 LGMRPNRLFDTELGARLA--GLERVNLGATVEELLGYKLAKKHSKEDWSRRPLPESWLNY 209 Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 A DV L LR + L++ G+ A +L Sbjct: 210 ALLDVDVLIDLRDALEDLLRQQGKLQYALEEFEYL 244 >gi|46249983|gb|AAH68411.1| Zgc:175195 protein [Danio rerio] Length = 504 Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 114 TNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD-----VVHLHALRLQ 166 TN LK ++LL + + K+ + SDW A++LS EQ+ YAA D + H L + Sbjct: 94 TNGLSLKSLAEDLLNVTLDKSVELRCSDWEAEELSPEQITYAARDAQISIALFFHLLGMN 153 Query: 167 FTEKLQRLGRSDL--ATSCCNFLMD 189 L G + ++CC L+D Sbjct: 154 TERHLPAEGEAVFLHLSACCQGLVD 178 >gi|242053889|ref|XP_002456090.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor] gi|241928065|gb|EES01210.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor] Length = 239 Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 13/94 (13%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-LTRTYTNQHGLKDNLK 124 VG+ VD E+++ D +L T PV +A+ L+R + GLK ++ Sbjct: 117 FVGVSVDGDVERLY----CDCKILVAT------PVDLRHVAAEVLSRPELRRAGLKALVR 166 Query: 125 ELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156 E++G+ + K + S WS LS EQ++YAA D Sbjct: 167 EVMGVVMEKPKHVTMSRWSRRPLSPEQVRYAAID 200 >gi|218263130|ref|ZP_03477349.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii DSM 18315] gi|218222915|gb|EEC95565.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii DSM 18315] Length = 193 Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 5/51 (9%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 + Y Q G++D +L+++ I ISK Q+ S+W AD LSD Q +YAA D Sbjct: 129 QNYVGQFGIEDASLQKIYAILFNKKISKGQRLSNWEADVLSDAQKKYAALD 179 >gi|288925838|ref|ZP_06419769.1| 3'-5' exonuclease domain protein [Prevotella buccae D17] gi|288337493|gb|EFC75848.1| 3'-5' exonuclease domain protein [Prevotella buccae D17] Length = 212 Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 44/176 (25%) Query: 21 DAIAVDTETLGLMPR-------------RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 D + DTET + R RD + +L+ T DIIR+ + + Sbjct: 46 DILGFDTETKPVFRRGQHSKVALLQVANRDACILFRLNYTGMTSDIIRLL--EDRTVKKI 103 Query: 68 GM-----LVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 G+ ++ +R K F G F D+ + G+ R L + Y N Sbjct: 104 GLSWHDDILSLQRRKPFQVGSFIDLQDIVGDLGIEDRS---------LQKLYAN------ 148 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L ISK Q+ ++W AD L D Q QYAA+D ++ E+++RL R+ Sbjct: 149 ----LFQEKISKNQRLTNWEADVLKDSQKQYAATDAWTC----IKLYEEIERLKRT 196 >gi|226306331|ref|YP_002766291.1| ribonuclease D [Rhodococcus erythropolis PR4] gi|226185448|dbj|BAH33552.1| putative ribonuclease D [Rhodococcus erythropolis PR4] Length = 429 Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+ +F T++A RL + GL ++ L + + K + Sbjct: 102 VLHSADQDLPGL-AELGLTPAELFDTELAGRLA--GFERVGLAAIVERTLRVELRKGHGA 158 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +DWS L D L YAA DV L LR +L+ G+ + A ++ Sbjct: 159 ADWSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGKLEWAKEEFEYI 208 >gi|330802281|ref|XP_003289147.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum] gi|325080770|gb|EGC34311.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum] Length = 1045 Score = 37.7 bits (86), Expect = 0.94, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 3/142 (2%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 +V+ A+D E + +C++Q+S G II A + + L + + K+ Sbjct: 269 HVEEFAMDLEHHNYRSYQGFVCLMQIST-RGEDFIIDTLALRSHIHMLNNVTTNPAIVKV 327 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H DI L FG+ + +F T ASR+ + L LK ++ +K Q + Sbjct: 328 LHGSDSDIKWLQRDFGIYIVNMFDTGQASRVLEYPSAS--LAFLLKYFCAVDANKKYQLA 385 Query: 139 DWSADDLSDEQLQYAASDVVHL 160 DW + +E ++YA D +L Sbjct: 386 DWRIRKIPEEMIKYAREDTHYL 407 >gi|302837201|ref|XP_002950160.1| 3'-5' exonuclease [Volvox carteri f. nagariensis] gi|300264633|gb|EFJ48828.1| 3'-5' exonuclease [Volvox carteri f. nagariensis] Length = 313 Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 23/118 (19%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVF---CTKIASR----LTRTYTNQHGLKDNLKELLGI 129 K+F+ R D L++ GV +R V +++A R + R GL L+ L Sbjct: 143 KLFYDVRCDAEALYHQHGVSLRGVVDLQLSEVAYRRYGPVVRRVGYVIGLTRALECYLAP 202 Query: 130 NISKAQQSSD----------------WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + QS+ W LS EQ++YAA DV++LH L +FT L Sbjct: 203 ELRERWQSTAVDKRLLHETFNRDLRYWDRRPLSQEQVRYAADDVLYLHHLHREFTAAL 260 >gi|229491276|ref|ZP_04385102.1| ribonuclease D [Rhodococcus erythropolis SK121] gi|229321815|gb|EEN87610.1| ribonuclease D [Rhodococcus erythropolis SK121] Length = 431 Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+ +F T++A RL + GL ++ L + + K + Sbjct: 104 VLHSADQDLPGL-AELGLTPAELFDTELAGRLA--GFERVGLAAIVERTLRVELRKGHGA 160 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +DWS L D L YAA DV L LR +L+ G+ + A ++ Sbjct: 161 ADWSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGKLEWAKEEFEYI 210 >gi|32473842|ref|NP_866836.1| ribonuclease D [Rhodopirellula baltica SH 1] gi|32444378|emb|CAD74377.1| ribonuclease D [Rhodopirellula baltica SH 1] Length = 493 Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 8/159 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK----- 77 I DTE + R LC+VQ++ G I G + +L D++ E Sbjct: 114 IGFDTEFVSEDCYRPELCLVQVAAGKHLAVIDPYTVG--DTKPFWDILTDDQIEPGSRVV 171 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H R +I + G + +F T++A+ L +++L+G + K + Sbjct: 172 IAHAAREEIRFAYRYSGRPIAGLFDTQLAAGFV-GIEYPASLATLVQKLVGQTLPKGETR 230 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++W L+ +QL YA DV L + + ++ L R Sbjct: 231 TNWRHRPLTKDQLTYALHDVTTLAEMHSKLIADVKALDR 269 >gi|300932462|ref|ZP_07147718.1| hypothetical protein CresD4_00200 [Corynebacterium resistens DSM 45100] Length = 429 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 6/164 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 IA+DTE + DR ++QL G GT + K +L + + H Sbjct: 22 IAIDTERAAMYRFDDRAYLIQLRREGAGTFIVDPTGHPAKLREWQDALLAETP--WLLHA 79 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L G + + T+IA+RL + + GL L+E L I+I K + ++DWS Sbjct: 80 AHTDLPALL-ALGWQPSVLLDTQIAARLLGCH--RLGLSLLLEEFLSISIPKDKGNADWS 136 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 L + L YAA DV +L + ++L L R D C Sbjct: 137 QRPLPNSMLAYAALDVEYLVPMHDMMIKELAELNRLDWYRQECE 180 >gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp. lyrata] gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp. lyrata] Length = 891 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 19/167 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQK------NAPNLVGMLVDEK 74 AVDTE L ++Q+S D VD I + + PN+ Sbjct: 140 FAVDTEQHSLRSFLGFTALIQISTHEKDFLVDTIVLHDAMSILRPVFSEPNIC------- 192 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+FH D+ L F + V +F T A + Q L L+ + G+ +K Sbjct: 193 --KVFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKL 248 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 Q DW LS+E ++YA +D +L + T +L++L D ++ Sbjct: 249 LQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTAELKQLATEDSSS 295 >gi|157133260|ref|XP_001656205.1| 3-5 exonuclease [Aedes aegypti] gi|108870910|gb|EAT35135.1| 3-5 exonuclease [Aedes aegypti] Length = 771 Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 5/143 (3%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R + D E + +R + ++QL+ G +IR+ ++ P L +L D K Sbjct: 67 REFRVLGFDCEWVNEQGKRHPVALLQLATHRGLCALIRLCEMKRIPPELGELLNDPAIVK 126 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 + D +L + + ++V + +A R +G+ ++ LG+ + K + Sbjct: 127 VGVGPLEDAKLLRHDYNLKVESTLDLRHLADRCG--VPGPYGMAKLAEKTLGVKLDKHWR 184 Query: 137 --SSDWSADDLSDEQLQYAASDV 157 +S+W L++ Q+QYAASD Sbjct: 185 IRASNWENAQLTERQIQYAASDA 207 >gi|218749845|ref|NP_001136335.1| egalitarian [Nasonia vitripennis] Length = 829 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 23/193 (11%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK--NAPNLVGM 69 P + AA ++ D E + + P+ RL ++Q+ G + I + A L + Sbjct: 401 PRKSAADGKSVVSFDCEGINVGPK-GRLTLLQIGTMSGLIYIFDLITCPNILQAGGLQKL 459 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR-----------------T 112 L E K+ H + D A LF+ FG+ + +F T+ A + T Sbjct: 460 LESENVIKVIHDCKNDSANLFHQFGITLVNIFDTQAAHSVIEYQNTGKPVYKVKNANLNT 519 Query: 113 YTNQHGLKDN-LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + +G N LKE L NI + Q W+ L+ + + YA+SDV L L KL Sbjct: 520 LCDLYGAPSNVLKEQLK-NIYRRDQRY-WARRPLTRDMIVYASSDVQSLVPLIYNAMSKL 577 Query: 172 QRLGRSDLATSCC 184 + L C Sbjct: 578 IKPEMQKLFNELC 590 >gi|156543102|ref|XP_001605365.1| PREDICTED: similar to ENSANGP00000024697 [Nasonia vitripennis] Length = 1018 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 8/75 (10%) Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K E ++H G F++++++Y G+++RP F + K+ ++ +LG N Sbjct: 253 KAEALYHLGDFELSLVYYYRGMKIRPEF--------DQFRLGVQKAKEAIQNILGSNSVP 304 Query: 134 AQQSSDWSADDLSDE 148 A + +D D+L +E Sbjct: 305 APKKTDSRTDELLEE 319 >gi|320167779|gb|EFW44678.1| exosome component 10 protein [Capsaspora owczarzaki ATCC 30864] Length = 945 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 3/141 (2%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 V A+D E + +C++Q+S V +I A + + +L + + K+F Sbjct: 312 VSEFAIDLEHHSYRSLQGFVCLMQVSTRTEDV-VIDTLAVRSSMHHLREVFANPNILKVF 370 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L + FG+ +F T A+R+ + L L+ + K Q +D Sbjct: 371 HGADMDVVWLQHDFGIYTINMFDTGQAARVLEL--GSYSLAHLLRYFCNVTADKKYQLAD 428 Query: 140 WSADDLSDEQLQYAASDVVHL 160 W + E LQYA D +L Sbjct: 429 WRIRPIPAEMLQYAREDTHYL 449 >gi|255086371|ref|XP_002509152.1| predicted protein [Micromonas sp. RCC299] gi|226524430|gb|ACO70410.1| predicted protein [Micromonas sp. RCC299] Length = 1227 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 V C + A+ + R + +Q GL + LLG + K ++ DWS L++ Q+ Y A D Sbjct: 610 VLCLQRAA-IDRGHGSQPGLSSVCQALLGQPLDKRERCGDWSRRPLTESQVAYGAQDA 666 >gi|229817486|ref|ZP_04447768.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM 20098] gi|229785275|gb|EEP21389.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM 20098] Length = 430 Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ F G+ + +F T++A+R+ ++ GL + LGI ++K + Sbjct: 94 IIHDAMMDLPG-FAQIGMTPQRLFDTEMAARML--GLSRFGLAAVTERYLGITLAKEHSA 150 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +DWS L + YAA DV L L + L+ G+ + A Sbjct: 151 ADWSYRPLPRDWRNYAALDVELLIELERKMRADLKASGKEEWA 193 >gi|308474798|ref|XP_003099619.1| hypothetical protein CRE_22979 [Caenorhabditis remanei] gi|308266474|gb|EFP10427.1| hypothetical protein CRE_22979 [Caenorhabditis remanei] Length = 398 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 28/44 (63%) Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 LK ++G ISK++ S W+ +L +Q+ YAA D + LH + ++ Sbjct: 231 LKRVVGKEISKSETMSCWTVPELRHDQIHYAAMDAIALHYINIK 274 >gi|307212494|gb|EFN88225.1| Exosome component 10 [Harpegnathos saltator] Length = 804 Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 15/177 (8%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 RY + IAVD E + C++Q+S D T +I + L + K Sbjct: 192 RY-NEIAVDLEHHSYRSFQGVTCLMQISTVD-TDYLIDTLILRSELHQLNEIFTKPTILK 249 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 +FH FDI L + V +F T + A +L Y + L LK+ IN +K Q Sbjct: 250 VFHGADFDIQWLQRDLSLYVVNMFDTHQAAKQLNFPYLSLAFL---LKKYCNINPNKHFQ 306 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL--GRS-------DLATSCC 184 +DW L +E ++YA D +L ++ +L L G+S D++T C Sbjct: 307 LADWRIRPLPEELMKYAREDTHYLLHIKDMLKNELIELANGQSNILKAVYDMSTDIC 363 >gi|255730563|ref|XP_002550206.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240132163|gb|EER31721.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 786 Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 3/151 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + IAVD E +C++Q+S D II A + L + + K+FH Sbjct: 252 EEIAVDLEHHDFRTYYGIVCLMQISNRDQDW-IIDTLALRDELTELNEVFTNPNIVKVFH 310 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L G+ + +F T ASR ++ L L+ SK Q +DW Sbjct: 311 GAFMDIIWLQRDLGLYIVSLFDTYHASRALG--LSRFSLAYLLEHYAQFKTSKKYQLADW 368 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 LS L YA SD L + Q KL Sbjct: 369 RIRPLSSPMLAYARSDTHFLLYIYDQLKNKL 399 >gi|303286107|ref|XP_003062343.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455860|gb|EEH53162.1| predicted protein [Micromonas pusilla CCMP1545] Length = 149 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 V AVD E R C++Q+S + + +A K +L D ++K+ Sbjct: 18 VAEFAVDLEHHSYRSFRGFTCVIQVSTRERDFVVDALALRSKMRAHLARHFEDATKQKVM 77 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG---LKD---NLKELLGINISK 133 H D+ L FG+ V +F T A+R+ + G L D LK ++ K Sbjct: 78 HGADMDVQWLQRDFGIYVVNMFDTGQAARVLELPSKGLGAFYLTDAAYALKHFCDVDADK 137 Query: 134 AQQSSDW 140 Q +DW Sbjct: 138 RYQLADW 144 >gi|308490719|ref|XP_003107551.1| hypothetical protein CRE_13400 [Caenorhabditis remanei] gi|308250420|gb|EFO94372.1| hypothetical protein CRE_13400 [Caenorhabditis remanei] Length = 168 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%) Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 LKD++K + +++ K + SDW+A L D+Q+ YAA D V L+ L + Sbjct: 58 LKDHVKIVTEMDLLKNETMSDWNAPRLRDDQVWYAAMDAVCLYYLNV 104 >gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo] Length = 888 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L FG+ + +F T A+RL +H L LK ++ K Q Sbjct: 359 KVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNL--GKHSLDHLLKLYCSVDADKQYQ 416 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L +E +QYA D +L Sbjct: 417 LADWRIRPLPEEMIQYARDDTHYL 440 >gi|195625840|gb|ACG34750.1| hypothetical protein [Zea mays] Length = 202 Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156 + A R+ R Q GL+ ++ ++G+N+ K Q+ S W A LS EQ++YA D Sbjct: 132 RAAERMNRPDLRQAGLRALVQVVMGVNLVKPQRVTMSRWDASCLSYEQIKYACID 186 >gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus] Length = 910 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L FG+ + +F T A+RL +H L LK ++ K Q Sbjct: 381 KVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNL--GKHSLDHLLKLYCSVDADKQYQ 438 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L +E +QYA D +L Sbjct: 439 LADWRIRPLPEEMIQYARDDTHYL 462 >gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio] Length = 899 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FG+ V +F T A+R N L LK ++ K Q Sbjct: 361 KVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRN--SLDHLLKVYCDVSSDKRYQ 418 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L DE L+YA +D +L Sbjct: 419 LADWRIRPLPDEMLKYAQADTHYL 442 >gi|268533708|ref|XP_002631983.1| Hypothetical protein CBG10261 [Caenorhabditis briggsae] gi|187031193|emb|CAP29729.1| hypothetical protein CBG_10261 [Caenorhabditis briggsae AF16] Length = 413 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/25 (56%), Positives = 20/25 (80%) Query: 128 GINISKAQQSSDWSADDLSDEQLQY 152 GI ISK + SDW+A++L D+Q+QY Sbjct: 336 GIEISKTETMSDWTAEELRDDQMQY 360 >gi|289743269|gb|ADD20382.1| putative salivary expressed 3'-5' exonuclease [Glossina morsitans morsitans] Length = 339 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 4/142 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R+ + D E + + R+ + ++QL+ +G + R+ +L +L D++ Sbjct: 67 CRHYKVLGFDCEWITVGRVRNPVALLQLASPNGFCGLFRLRHMHHIPESLKNLLRDKEII 126 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ D L +G+ V F + + + R GL+ + LL ++ K Sbjct: 127 KVGVDPAGDARKLQEDYGIYVASTFDIRYLAVMIRC--KPLGLEKLSRSLLNVDFVKRGY 184 Query: 137 --SSDWSADDLSDEQLQYAASD 156 S+W D L D+Q++YAA+D Sbjct: 185 IGRSNWEFDKLDDDQVEYAAND 206 >gi|255542852|ref|XP_002512489.1| 3-5 exonuclease, putative [Ricinus communis] gi|223548450|gb|EEF49941.1| 3-5 exonuclease, putative [Ricinus communis] Length = 570 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 27/43 (62%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 GL K+LLG ++K +++S+W LS QL+YAA D V L Sbjct: 476 GLSGLAKKLLGAGLNKTRRNSNWEQRPLSQHQLEYAALDAVVL 518 >gi|226533262|ref|NP_001141102.1| hypothetical protein LOC100273185 [Zea mays] gi|194702630|gb|ACF85399.1| unknown [Zea mays] Length = 202 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156 + A R+ R Q GL+ ++ ++G+N+ K Q+ S W A LS EQ++YA D Sbjct: 132 RAAERMNRPDLRQAGLRALVQVVMGVNLVKPQRVTMSRWDASCLSYEQIKYACID 186 >gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] Length = 937 Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 51/124 (41%), Gaps = 16/124 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGM--- 69 AR +AVDTET L RL V LS G G I + G + P + M Sbjct: 351 ARAAHVVAVDTETASLDSVTGRLVGVSLSTGAGKACYIPLGHGGTDMFAEKPEQIAMGDA 410 Query: 70 -------LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 D+ K+ H ++DI VL GV V P T + S +QHGL D Sbjct: 411 LERLGALFADDAVLKVGHNLKYDIGVL-AQHGVTVAPYDDTLLMSFALDAGKHQHGL-DE 468 Query: 123 LKEL 126 L +L Sbjct: 469 LAKL 472 >gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] Length = 593 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML--VDEKREKIFHYG 82 D ET G + RL +QL GD D + A Q P + + + E +FH G Sbjct: 3 ADCETNGFLHVMTRLWTIQL--GDANTDEATVYADQIGFPPIKDAIKRLKEADRVVFHNG 60 Query: 83 R-FDIAVL--FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 + FDI + FY + V+ T +A+RL + L D K L + D Sbjct: 61 QGFDIHAINHFYPGTLTPHQVWDTLVAARLLNPSERANSLDDWGKRL----GEYKGEFKD 116 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +S S E ++YA DVV L + +L+ G+S Sbjct: 117 FSR--FSKELVEYARQDVVVTRKLYHKLEPQLRNWGQS 152 >gi|221121078|ref|XP_002157951.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 758 Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 7/145 (4%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + V IAVD E + LC++Q+S D +D + A ++ + + D Sbjct: 258 KKVKEIAVDLEHHSYRSFQGFLCLMQISTRFEDFIIDTL---ALREEMYKINEIFSDPNI 314 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H DI L FGV V +F T A+R + ++ L L + ++ K Sbjct: 315 LKVMHGADSDIGWLQRDFGVYVVNMFDTGQAAR--TLHEDRFSLAYLLSKYCNVDAQKQY 372 Query: 136 QSSDWSADDLSDEQLQYAASDVVHL 160 Q +DW + E + YA D +L Sbjct: 373 QLADWRIRPIPKEMILYAQEDTHYL 397 >gi|255075999|ref|XP_002501674.1| predicted protein [Micromonas sp. RCC299] gi|226516938|gb|ACO62932.1| predicted protein [Micromonas sp. RCC299] Length = 725 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 109 LTRTYTNQH--GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----VVHLHA 162 L Y +H GL +LG + KA + SDWS L+ Q+ YAA D V + Sbjct: 645 LKEHYQRKHLVGLSHLTAAVLGKPLDKATRMSDWSKRPLTPRQVTYAALDAWVLVELMRT 704 Query: 163 LRLQFTEKLQRL 174 LR E+L+RL Sbjct: 705 LRENHAEELERL 716 >gi|117530351|ref|YP_851194.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01] gi|117165963|dbj|BAF36271.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01] Length = 427 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%) Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-------ASRLTRTYTNQHGLKD 121 + +D K+ RF+ V T+GV ++C + A+ T + Sbjct: 89 IWLDSSVRKVCFNARFEALVTQATWGVWPDNLYCAMVLFQQIGAATGFKAGRTRGYSYGS 148 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 ++++L ++K SSDWS +L+ QLQYAA DV Sbjct: 149 LVRDILDTPLNKELASSDWSG-ELTPAQLQYAALDV 183 >gi|308473681|ref|XP_003099064.1| hypothetical protein CRE_27780 [Caenorhabditis remanei] gi|308267718|gb|EFP11671.1| hypothetical protein CRE_27780 [Caenorhabditis remanei] Length = 208 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR----LQFTEKLQRLGRSDLA 180 + + ISK++ S+W L D+Q+QYAA D + LH + L ++ R R D++ Sbjct: 53 IRVPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNINIGTALDWSYSPPRPSRPDIS 110 >gi|308486518|ref|XP_003105456.1| hypothetical protein CRE_21803 [Caenorhabditis remanei] gi|308256561|gb|EFP00514.1| hypothetical protein CRE_21803 [Caenorhabditis remanei] Length = 371 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 22/35 (62%) Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 ISK + S+W L D+Q+QYAA D + LH L + Sbjct: 220 ISKTETMSNWCGPQLRDDQIQYAAMDAIVLHNLNI 254 >gi|255327433|ref|ZP_05368506.1| ribonuclease D [Rothia mucilaginosa ATCC 25296] gi|255295501|gb|EET74845.1| ribonuclease D [Rothia mucilaginosa ATCC 25296] Length = 421 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 93 FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 G+R +F T++ +RL + L ++ELLG ++K DWS L + L Y Sbjct: 124 LGMRPNRLFDTELGARLA--GLERVNLGAAVEELLGYKLAKKHSKEDWSRRPLPESWLNY 181 Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 A DV L LR + L++ G+ A +L Sbjct: 182 ALLDVDVLIDLRDAMEDLLRQQGKLQYALEEFEYL 216 >gi|308455884|ref|XP_003090432.1| hypothetical protein CRE_12365 [Caenorhabditis remanei] gi|308263351|gb|EFP07304.1| hypothetical protein CRE_12365 [Caenorhabditis remanei] Length = 308 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 LK + + G+ I K + S W+ DL +QL YAA D + LH + ++ Sbjct: 230 SLKKMVDDWAGVKIVKTETMSCWTVPDLRHDQLHYAAMDAIALHYINIR 278 >gi|289610752|emb|CBI60186.1| unnamed protein product [Sordaria macrospora] Length = 134 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 28/139 (20%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D +AVDTE + LC++Q++ + I +A G P L+ +L D + Sbjct: 24 DFVAVDTEFMRENSYWPELCLIQIANTEEAAAIDPMAPGIDLTP-LLNLLTDNED----- 77 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 K+A+ + Q G + + LGI + K + +DW Sbjct: 78 ---------------------VLKVAA-MALGQGEQVGYSNLVDAYLGITVDKGARFTDW 115 Query: 141 SADDLSDEQLQYAASDVVH 159 S L D Q+ YA +D H Sbjct: 116 SRRPLDDRQIDYAIADATH 134 >gi|115438991|ref|NP_001043775.1| Os01g0660800 [Oryza sativa Japonica Group] gi|55773822|dbj|BAD72360.1| hypothetical protein [Oryza sativa Japonica Group] gi|55773961|dbj|BAD72488.1| hypothetical protein [Oryza sativa Japonica Group] gi|113533306|dbj|BAF05689.1| Os01g0660800 [Oryza sativa Japonica Group] gi|125527143|gb|EAY75257.1| hypothetical protein OsI_03144 [Oryza sativa Indica Group] Length = 199 Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156 A RL R +Q GL+ ++ ++G ++ K Q+ S W A LS+EQ++YA D Sbjct: 133 AQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACID 185 >gi|307103312|gb|EFN51573.1| hypothetical protein CHLNCDRAFT_140064 [Chlorella variabilis] Length = 969 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG---LKDNLK 124 G+ D ++ H F +A R + R T Y + G L + Sbjct: 491 GIASDFRKLARHHPAAFSLARGCLDLSTLWRSCHIEQTGKRSTAGYKKRVGEVSLSVLAQ 550 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 +LG + K+QQ SDW LS +QL+YAA D HA L F Sbjct: 551 SVLGKPLDKSQQVSDWGRRPLSSQQLEYAALDA---HAAVLIF 590 >gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806] Length = 956 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 16/114 (14%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-------- 74 +A DTET L PR +L + G + I G +N NL +V EK Sbjct: 368 VAWDTETTDLNPRVAKLVGIGCCWGKELNAMAYIPIGHQNGDNLNLEIVLEKLRPILASD 427 Query: 75 -REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 K+F +FDI V FY G+ V+ VF T +AS Y L NL++L Sbjct: 428 NYPKVFQNAKFDIDV-FYHQGITVKGLVFDTMVAS-----YVLHPELTHNLEDL 475 >gi|115948726|ref|XP_001193541.1| PREDICTED: similar to exosome component 10, partial [Strongylocentrotus purpuratus] Length = 776 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 9/186 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E C++Q+S D VD + + + + L D K K+FH Sbjct: 140 IAVDLEHHSYRSYLGFTCLMQISTAEHDYVVDTLELRSELQM---LNDAFTDPKIVKVFH 196 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D L G+ V +F T ASR H L L + K Q +DW Sbjct: 197 GANMDFDWLQRDLGLYVVNMFDTHQASR--SLGFPHHSLASLLSRYCQVEADKQYQLADW 254 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200 L +E L YA D +L L + T K + + R + + ++D++ + N Sbjct: 255 RIRPLPEEMLHYAREDTHYL--LYIYHTMKNELIKRGNDRRNLLRAVLDQSTRICVQRYN 312 Query: 201 VDIFSH 206 IF++ Sbjct: 313 KPIFTN 318 >gi|308471995|ref|XP_003098227.1| hypothetical protein CRE_12172 [Caenorhabditis remanei] gi|308269378|gb|EFP13331.1| hypothetical protein CRE_12172 [Caenorhabditis remanei] Length = 391 Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR----LQFTEKLQRLGRSDLA 180 + ISK++ S+W L D+Q+QYAA D + LH + L ++ R R D++ Sbjct: 238 VPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNINIGTTLDWSYSPPRPSRPDIS 293 >gi|296215361|ref|XP_002807292.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 3'-5' domain-containing protein 2-like [Callithrix jacchus] Length = 621 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---AGQKNAP-NLVGMLVDEKREKI 78 + +D E + L R L ++Q++ G +IR+ G K P L+ +L D K+ Sbjct: 105 LGIDCEWVNLEGRASPLSLLQMASPSGLCVLIRLPKLICGGKTLPRTLLDILADGTILKV 164 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT--YTNQHGLKDNLKELLGINISKAQ- 135 D + L +G+ VR + + R +N LK + +L ++ K+ Sbjct: 165 GVGCSEDASKLLQDYGLVVRGCLDLRYLAMWQRKNLLSNGLSLKSLAETVLNFSLDKSLV 224 Query: 136 -QSSDWSADDLSDEQLQYAASD-----VVHLHALRLQFT 168 + S+W A+ L+++Q+ YAA D + LH L F+ Sbjct: 225 LRCSNWDAETLTEDQVIYAARDAQISVALFLHLLGYPFS 263 >gi|159480884|ref|XP_001698512.1| hypothetical protein CHLREDRAFT_142979 [Chlamydomonas reinhardtii] gi|158282252|gb|EDP08005.1| predicted protein [Chlamydomonas reinhardtii] Length = 3780 Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 85 DIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHG-LKDNLKELLGINISKAQQSSDWSA 142 D+ L FGVRVR + +A R+ G L+ LLG + K Q SDW A Sbjct: 260 DVKRLERDFGVRVRGAVDVRLVAQRVAPDCLAAGGSLQALTGSLLGRRLDKGPQRSDWGA 319 Query: 143 DDLSDEQLQYAASD 156 L Q+ YAA D Sbjct: 320 GRLDQRQVVYAAHD 333 >gi|222618988|gb|EEE55120.1| hypothetical protein OsJ_02898 [Oryza sativa Japonica Group] Length = 174 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156 A RL R +Q GL+ ++ ++G ++ K Q+ S W A LS+EQ++YA D Sbjct: 108 AQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACID 160 >gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex] Length = 834 Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 3/156 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVD E + C++Q+S I + + P L + + K KIFH Sbjct: 255 IAVDLEAHSYRSFQGLTCLMQISTSSSDYIIDTLELWDQLQP-LNEVFCNPKIVKIFHGA 313 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A++L Q L L+ + K Q +DW Sbjct: 314 DMDIQWLQRDFGIYVVNLFDTYHAAKLLGF--AQLSLSFLLRHYCQVIADKQYQLADWRI 371 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L ++ + YA D +L + + + L+ G D Sbjct: 372 RPLPEQMVNYAREDTHYLGYIYEKMKKDLKMKGTGD 407 >gi|111226700|ref|XP_642107.2| 3'-5' exonuclease domain-containing protein [Dictyostelium discoideum AX4] gi|90970724|gb|EAL68469.2| 3'-5' exonuclease domain-containing protein [Dictyostelium discoideum AX4] Length = 686 Score = 37.0 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 ++ ++QLS + T +I+++ +K +L +L D + K+ D A +F TF V Sbjct: 193 KVALIQLSSKNETF-LIQVSQMEKIPISLEQILTDPRLIKVGVAVSQDAATIFQTFSVVT 251 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAAS 155 + +RLT N GL ++ + ++K+ + W LS++Q+ YAA+ Sbjct: 252 KGYVDLVPIARLTNYEGN--GLASLALNVMNVTLNKSNKIRCGHWENKKLSNDQIHYAAA 309 Query: 156 D 156 D Sbjct: 310 D 310 >gi|300858616|ref|YP_003783599.1| ribonuclease D [Corynebacterium pseudotuberculosis FRC41] gi|300686070|gb|ADK28992.1| Ribonuclease D [Corynebacterium pseudotuberculosis FRC41] gi|302206328|gb|ADL10670.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis C231] gi|302330885|gb|ADL21079.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis 1002] gi|308276570|gb|ADO26469.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis I19] Length = 401 Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ L G+R +F T++A RL + L +E++G+ + K + Sbjct: 90 IIHAAPSDLPCL-RELGLRPSNIFDTELAGRLM--GMPRVNLAAMSEEIVGLTLLKGHGA 146 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DWS L + L YAA DV L L E L G+ + A Sbjct: 147 EDWSRRPLPIDWLNYAALDVETLLDLADAMAELLDSQGKLEWA 189 >gi|308460450|ref|XP_003092529.1| hypothetical protein CRE_25898 [Caenorhabditis remanei] gi|308253105|gb|EFO97057.1| hypothetical protein CRE_25898 [Caenorhabditis remanei] Length = 418 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR----LQFTEKLQRLGRSDLA 180 + ISK++ S+W L D+Q+QYAA D + LH + L ++ R R D++ Sbjct: 265 VPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNINIGTTLDWSYSPPRPSRPDIS 320 >gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis] gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis] Length = 883 Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FG+ + +F T A+R+ +H L L+ + K Q Sbjct: 359 KVFHGADSDIEWLQKDFGLYIVNMFDTHQAARILNL--GRHSLDHLLRLYCNVESDKRYQ 416 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L +E L+YA D +L Sbjct: 417 LADWRIRPLPEEMLEYARVDTHYL 440 >gi|294865716|ref|XP_002764472.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983] gi|239863939|gb|EEQ97189.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983] Length = 703 Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 18/147 (12%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR----- 75 +A+D E + R C++Q++ D VD++ AP ++ + D R Sbjct: 565 VAIDLEHHNMQSYRGFTCLIQIATRKKDYIVDVL--------APGIMMKMHDFNRITSDP 616 Query: 76 --EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+ H D+ L + +F T A+R+ + LK+ L G K Sbjct: 617 GIVKVLHGADMDVQWLQRDLSAYLCNMFDTGQAARVLE-LGGGYSLKNLLDFYCGYKADK 675 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160 A Q +DW LS+ QYA DV +L Sbjct: 676 ANQLADWRQRPLSERMKQYARDDVHYL 702 >gi|182435269|ref|YP_001822988.1| putative ribonuclease D [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463785|dbj|BAG18305.1| putative ribonuclease D [Streptomyces griseus subsp. griseus NBRC 13350] Length = 423 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 112 EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLA--GFPRVGLGAMVENVLGYALEKGH 168 Query: 136 QSSDWSADDLSDEQLQYAASDV 157 + DWS L + L+YAA DV Sbjct: 169 SAVDWSTRPLPEPWLRYAALDV 190 >gi|218512494|ref|ZP_03509334.1| hypothetical protein Retl8_01789 [Rhizobium etli 8C-3] Length = 35 Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 14/18 (77%), Positives = 16/18 (88%) Query: 190 RAELDLLGWENVDIFSHS 207 RA+LDLLGWE DIF+HS Sbjct: 18 RAKLDLLGWEEADIFAHS 35 >gi|220905226|ref|YP_002480538.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869525|gb|ACL49860.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 214 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 22/41 (53%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 GL+ G +SK Q S+WS +LS Q+ YAA+D Sbjct: 141 QGLRTLAANFFGWRVSKGSQCSNWSLPELSARQIAYAATDA 181 >gi|328698648|ref|XP_001946371.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like [Acyrthosiphon pisum] Length = 522 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 E +A Y+ + +D E + R + ++Q++ +G +IR++ + +L +L + Sbjct: 51 EKSASYLPILGLDCEWVTQNGIRQPVALLQIADNNGMCSLIRLSKFKTIPSSLSDILSNS 110 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+ D +L + + V C + + + L +LLG + K Sbjct: 111 NIIKVGVAILDDAHLLMNDYNINVSG--CIDLRYLAKESCLEERSLSALAFKLLGCELDK 168 Query: 134 AQ--QSSDWSADDLSDEQLQYAASD 156 ++SDW A++L+D Q +YAA D Sbjct: 169 DWHVRASDWEAEELNDRQTEYAALD 193 >gi|326775908|ref|ZP_08235173.1| 3'-5' exonuclease [Streptomyces cf. griseus XylebKG-1] gi|326656241|gb|EGE41087.1| 3'-5' exonuclease [Streptomyces cf. griseus XylebKG-1] Length = 423 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 112 EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLA--GFPRVGLGAMVENVLGYALEKGH 168 Query: 136 QSSDWSADDLSDEQLQYAASDV 157 + DWS L + L+YAA DV Sbjct: 169 SAVDWSTRPLPEPWLRYAALDV 190 >gi|255015322|ref|ZP_05287448.1| hypothetical protein B2_15541 [Bacteroides sp. 2_1_7] Length = 193 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 5/51 (9%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 + Y Q G++D +L+++ I ISK Q+ ++W AD L+D Q +YAA D Sbjct: 129 QNYVGQFGIEDASLQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALD 179 >gi|150007050|ref|YP_001301793.1| hypothetical protein BDI_0393 [Parabacteroides distasonis ATCC 8503] gi|256840209|ref|ZP_05545717.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262381047|ref|ZP_06074185.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298377471|ref|ZP_06987423.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19] gi|301311285|ref|ZP_07217213.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3] gi|149935474|gb|ABR42171.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] gi|256737481|gb|EEU50807.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262296224|gb|EEY84154.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298265490|gb|EFI07151.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19] gi|300830859|gb|EFK61501.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3] Length = 193 Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 5/51 (9%) Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156 + Y Q G++D +L+++ I ISK Q+ ++W AD L+D Q +YAA D Sbjct: 129 QNYVGQFGIEDASLQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALD 179 >gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102] Length = 831 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 4/203 (1%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T + +EG + R IAVD E +C++Q+S D + + + Sbjct: 224 TWVDTYEGVLEMLQELRKAKEIAVDLEHHDFRTYTGLVCLMQVSTRDQDWIVDTLQPWRH 283 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + + K+FH D+ L G+ V +F T A L Y + L Sbjct: 284 KLEVLNDVFANPSIVKVFHGAYMDMVWLQRDLGLYVNGLFDTYFACDLL-NYPGK-SLAF 341 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH-LHALRLQFTEKLQRLGRSDLA 180 L + +G + K Q +DW + +E L YA SD + L+ E ++ +SD Sbjct: 342 LLSKFVGFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLYIFDNVRNELIEASDKSDPE 401 Query: 181 TSCCNFLMDRA-ELDLLGWENVD 202 N ++R+ EL L EN D Sbjct: 402 KDYINQALERSRELALSRHENPD 424 >gi|40063040|gb|AAR37896.1| ribonuclease D, putative [uncultured marine bacterium 560] Length = 358 Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 7/141 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 ++A+DTE + LC+VQ++ +D++ I + L L K E I Sbjct: 33 SLAIDTEFKRINTYYPELCLVQIATTQFAECIDVLSI----NDLEPLFEKLYHNKTEWIV 88 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H R DI L++ +F T+IA+ L Y Q + + L + + K+ D Sbjct: 89 HSARQDIEALYHLSKRIPVSLFDTQIAASLL-NYPLQISYQALTEILQDVLLDKSYTRFD 147 Query: 140 WSADDLSDEQLQYAASDVVHL 160 W+ L ++YA DV +L Sbjct: 148 WTTRPLPANVVEYALDDVRYL 168 >gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis] Length = 329 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L FG+ + VF T A+R + +H L LK ++ +K Q Sbjct: 147 KVLHGADSDVEWLQRDFGLYLVNVFDTHQAAR--QLSLGRHSLDHLLKLYCNVDANKQYQ 204 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L +E L YA D +L Sbjct: 205 LADWRIRPLPEEMLNYARDDTHYL 228 >gi|317475897|ref|ZP_07935153.1| 3'-5' exonuclease [Bacteroides eggerthii 1_2_48FAA] gi|316907930|gb|EFV29628.1| 3'-5' exonuclease [Bacteroides eggerthii 1_2_48FAA] Length = 210 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L G ISK+Q+ S+W A+ L+ Q QYAA+D L +LQ L R+ Sbjct: 147 LFGEKISKSQRLSNWEAEMLTPSQQQYAATDAWAC----LNIYNRLQELKRT 194 >gi|224064982|ref|XP_002301621.1| predicted protein [Populus trichocarpa] gi|222843347|gb|EEE80894.1| predicted protein [Populus trichocarpa] Length = 228 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 7/140 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 AVDTE L ++Q+S D VD I A L + D K+FH Sbjct: 74 FAVDTEQHSLRSFLGFTALIQISTRNEDYLVDTI---ALHDVMGVLAPVFADPTICKVFH 130 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L F + V +F T A + Q L L+ G+ +K Q DW Sbjct: 131 GADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGVATNKLLQREDW 188 Query: 141 SADDLSDEQLQYAASDVVHL 160 LS E L+YA +D +L Sbjct: 189 RQRPLSAEMLEYAQTDAHYL 208 >gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana] Length = 327 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 7/155 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 AVDTE L ++Q+S D VD I A L + D K+FH Sbjct: 141 FAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTI---ALHDVMSILRPVFSDPNICKVFH 197 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L F + V +F T A + Q L L+ + G+ +K Q DW Sbjct: 198 GADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKLLQREDW 255 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 LS+E ++YA D +L + T +L++L Sbjct: 256 RQRPLSEEMVRYARXDAHYLLYIADSLTTELKQLA 290 >gi|218129756|ref|ZP_03458560.1| hypothetical protein BACEGG_01335 [Bacteroides eggerthii DSM 20697] gi|217987866|gb|EEC54191.1| hypothetical protein BACEGG_01335 [Bacteroides eggerthii DSM 20697] Length = 210 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L G ISK+Q+ S+W A+ L+ Q QYAA+D L +LQ L R+ Sbjct: 147 LFGEKISKSQRLSNWEAEMLTPSQQQYAATDAWAC----LNIYNRLQELKRT 194 >gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana] Length = 872 Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 19/161 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTV--------DIIRIAAGQKNAPNLVGMLVDEK 74 AVDTE L ++Q+S + D++ I + PN+ Sbjct: 141 FAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNIC------- 193 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+FH D+ L F + V +F T A + Q L L+ + G+ +K Sbjct: 194 --KVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKL 249 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q DW LS+E ++YA +D +L + T +L++L Sbjct: 250 LQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 290 >gi|227503491|ref|ZP_03933540.1| ribonuclease D [Corynebacterium accolens ATCC 49725] gi|227075994|gb|EEI13957.1| ribonuclease D [Corynebacterium accolens ATCC 49725] Length = 406 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 64/153 (41%), Gaps = 17/153 (11%) Query: 13 AECAARY---VDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAP 64 AE AAR A+DTE DR ++Q+ G GT+ + R Q AP Sbjct: 23 AEAAARLQAGTGPFAIDTERASGYRYDDRAFLIQIRRRGAGTMLFAPEGHRAELTQALAP 82 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L G + I H D+ L + G+ +F T++A+R + G + Sbjct: 83 VLNG------QHWIIHAAPSDLPSLGW-LGLFPGTLFDTELAARFAGFHRTNLGA--IIA 133 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 EL + + K DWS LS+E YAA DV Sbjct: 134 ELFDVQLEKGHGDDDWSIPRLSEEMRAYAALDV 166 >gi|19553105|ref|NP_601107.1| ribonuclease D [Corynebacterium glutamicum ATCC 13032] gi|62390740|ref|YP_226142.1| ribonuclease D protein [Corynebacterium glutamicum ATCC 13032] gi|41326078|emb|CAF20241.1| PROBABLE RIBONUCLEASE D PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 403 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 18/185 (9%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAPNLV 67 A+ A A+DTE DR ++Q+ G GT+ + R Q P L Sbjct: 26 ADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVLN 85 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKE 125 G +E I H D+ L + + + P +F T++A RL + L +++ Sbjct: 86 G------QEWIIHAASTDLPSLAW---LDLHPGLLFDTELAGRLAGF--DHVNLAAMVEQ 134 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + +++ K S DWS L + L YAA DV L L E L + G+ A Sbjct: 135 IFDLHLLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFV 194 Query: 186 FLMDR 190 ++D+ Sbjct: 195 HIVDQ 199 >gi|160889123|ref|ZP_02070126.1| hypothetical protein BACUNI_01544 [Bacteroides uniformis ATCC 8492] gi|270296116|ref|ZP_06202316.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156861130|gb|EDO54561.1| hypothetical protein BACUNI_01544 [Bacteroides uniformis ATCC 8492] gi|270273520|gb|EFA19382.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 207 Score = 36.6 bits (83), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L G ISK+Q+ S+W A+ L++ Q YAA+D L KLQ L R+ Sbjct: 147 LFGEKISKSQRLSNWEAETLTEPQKLYAATDAWAC----LNIYNKLQELKRT 194 >gi|303286635|ref|XP_003062607.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456124|gb|EEH53426.1| predicted protein [Micromonas pusilla CCMP1545] Length = 720 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----VVHLHALRLQFTEKLQR 173 GL + +LG + K+ + SDWSA L++ Q YAA D V + LR + ++L R Sbjct: 657 GLSHVARVVLGKPLDKSTRMSDWSARPLTERQRHYAALDAWVLVEVMRVLREEHGDELDR 716 Query: 174 LGRS 177 L R Sbjct: 717 LSRG 720 >gi|118361377|ref|XP_001013917.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89295684|gb|EAR93672.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 1490 Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 I AG + +L M K EK F F DIA+L R +F + Sbjct: 459 IKAGHSISTDLNEMEKTFKSEKKFDLNNFVDIALL-------NRDIF----------SLA 501 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 N LK +++LL + +SK +Q S+W L Q+ YAA D + ++ EKL ++ Sbjct: 502 NTASLKFMVQKLLNLQMSKFEQISNWDRRPLRKSQIHYAAVDAF----IVIKLYEKLVQI 557 Query: 175 GRSDLATSCCNFLMDRAELDL 195 ++ A + N + + +L Sbjct: 558 QQAGGALNYVNVYQEEQKDNL 578 >gi|145295805|ref|YP_001138626.1| hypothetical protein cgR_1730 [Corynebacterium glutamicum R] gi|140845725|dbj|BAF54724.1| hypothetical protein [Corynebacterium glutamicum R] Length = 403 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 18/185 (9%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAPNLV 67 A+ A A+DTE DR ++Q+ G GT+ + R Q P L Sbjct: 26 ADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVLN 85 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKE 125 G +E I H D+ L + + + P +F T++A RL + L +++ Sbjct: 86 G------QEWIIHAASTDLPSLAW---LDLHPGLLFDTELAGRLAGF--DHVNLAAMVEQ 134 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + +++ K S DWS L + L YAA DV L L E L + G+ A Sbjct: 135 IFDLHLLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFV 194 Query: 186 FLMDR 190 ++D+ Sbjct: 195 HIVDQ 199 >gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum] Length = 892 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH +D+ L FG+ V +F T A + ++ L ++ + + + K Q Sbjct: 346 KVFHGSEYDVQWLQRDFGIYVVGMFDTFCAMHVLNFA--KYSLAHLVQSICNVTLDKELQ 403 Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160 +DW L+ ++YA SD +L Sbjct: 404 KADWRVRPLTTAHIEYARSDTHYL 427 >gi|254883500|ref|ZP_05256210.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254836293|gb|EET16602.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 216 Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKDN-----LKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 Y + G+ D L G ISK+Q+ S+W AD LS+ Q YAA+D Sbjct: 131 YVGRFGIADRSLQKIFANLFGQKISKSQRLSNWEADVLSEGQKLYAATD 179 >gi|319641711|ref|ZP_07996394.1| hypothetical protein HMPREF9011_01992 [Bacteroides sp. 3_1_40A] gi|317386685|gb|EFV67581.1| hypothetical protein HMPREF9011_01992 [Bacteroides sp. 3_1_40A] Length = 216 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKDN-----LKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 Y + G+ D L G ISK+Q+ S+W AD LS+ Q YAA+D Sbjct: 131 YVGRFGIADRSLQKIFANLFGQKISKSQRLSNWEADVLSEGQKLYAATD 179 >gi|90408161|ref|ZP_01216329.1| ribonuclease D [Psychromonas sp. CNPT3] gi|90310691|gb|EAS38808.1| ribonuclease D [Psychromonas sp. CNPT3] Length = 296 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH----LHALRLQFTEK 170 G ++ L G+ + K + +DW L+++Q+ YAA DV+H L L+ Q EK Sbjct: 36 GYAKMVETLQGVIVDKGESRTDWCKRPLTEKQVDYAAIDVLHLKPCLEKLKAQLAEK 92 >gi|21324671|dbj|BAB99294.1| Ribonuclease D [Corynebacterium glutamicum ATCC 13032] Length = 421 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 18/185 (9%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAPNLV 67 A+ A A+DTE DR ++Q+ G GT+ + R Q P L Sbjct: 44 ADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVLN 103 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKE 125 G +E I H D+ L + + + P +F T++A RL + L +++ Sbjct: 104 G------QEWIIHAASTDLPSLAW---LDLHPGLLFDTELAGRLAGF--DHVNLAAMVEQ 152 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + +++ K S DWS L + L YAA DV L L E L + G+ A Sbjct: 153 IFDLHLLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFV 212 Query: 186 FLMDR 190 ++D+ Sbjct: 213 HIVDQ 217 >gi|291514664|emb|CBK63874.1| Ribonuclease D [Alistipes shahii WAL 8301] Length = 202 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 16/31 (51%), Positives = 23/31 (74%) Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASD 156 +LG +SKAQ+ S+W A L+D+Q YAA+D Sbjct: 151 VLGRRVSKAQRLSNWEAATLTDKQQLYAATD 181 >gi|240254568|ref|NP_850189.5| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana] Length = 891 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH D+ L F + V +F T A + Q L L+ + G+ +K Q Sbjct: 194 KVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKLLQ 251 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 DW LS+E ++YA +D +L + T +L++L Sbjct: 252 REDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 290 >gi|242001434|ref|XP_002435360.1| 3-5 exonuclease, putative [Ixodes scapularis] gi|215498690|gb|EEC08184.1| 3-5 exonuclease, putative [Ixodes scapularis] Length = 587 Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 14/153 (9%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------NLVGMLV 71 R + +D+E + R R+ ++QL+P ++R+ + A +L +L Sbjct: 55 REAGVLGLDSEWTTVQGHRHRVALLQLAPNANFSVLLRLCQFTEEASTVTLPESLRDILK 114 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH----GLKDNLKELL 127 D K K+ D LF +G+ V C + L H GL+ + LL Sbjct: 115 DVKIIKVGVGVIDDAHKLFQDYGIDVWG--CLDLRHALGCLPELGHFPKVGLRSLSESLL 172 Query: 128 GINISKAQQ--SSDWSADDLSDEQLQYAASDVV 158 G++ K+ + S+W AD L+++Q++YAA D + Sbjct: 173 GVSPDKSWRLRCSNWEADVLTEKQIRYAADDAL 205 >gi|6324574|ref|NP_014643.1| Rrp6p [Saccharomyces cerevisiae S288c] gi|14195186|sp|Q12149|RRP6_YEAST RecName: Full=Exosome complex exonuclease RRP6; AltName: Full=Ribosomal RNA-processing protein 6 gi|1150996|gb|AAC49480.1| hypothetical protein UNC733 [Saccharomyces cerevisiae] gi|1420088|emb|CAA99189.1| unnamed protein product [Saccharomyces cerevisiae] gi|285814890|tpg|DAA10783.1| TPA: Rrp6p [Saccharomyces cerevisiae S288c] Length = 733 Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 7/151 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E +C++Q+S D VD +++ ++N L + + K+FH Sbjct: 235 IAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKL---RENLHILNEVFTNPSIVKVFH 291 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L G+ V +F T AS+ +H L L+ SK Q +DW Sbjct: 292 GAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL--PRHSLAYLLENFANFKTSKKYQLADW 349 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 LS YA +D L + Q KL Sbjct: 350 RIRPLSKPMTAYARADTHFLLNIYDQLRNKL 380 >gi|326498999|dbj|BAK05990.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 212 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS--DWSADDLSDEQLQYAASD 156 A + R + Q GLKD ++G N+ K ++ + W A LS EQ+QYA D Sbjct: 133 ADEMRRPWLRQAGLKDVAGVVMGANLHKPRRVTMGPWDACRLSQEQIQYACID 185 >gi|323335702|gb|EGA76985.1| Rrp6p [Saccharomyces cerevisiae Vin13] Length = 733 Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 7/151 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E +C++Q+S D VD +++ ++N L + + K+FH Sbjct: 235 IAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKL---RENLHILNEVFTNPSIVKVFH 291 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L G+ V +F T AS+ +H L L+ SK Q +DW Sbjct: 292 GAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL--PRHSLAYLLENFANFKTSKKYQLADW 349 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 LS YA +D L + Q KL Sbjct: 350 RIRPLSKPMTAYARADTHFLLNIYDQLRNKL 380 >gi|151945630|gb|EDN63871.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789] gi|190407342|gb|EDV10609.1| exosome complex exonuclease RRP6 [Saccharomyces cerevisiae RM11-1a] gi|207341289|gb|EDZ69386.1| YOR001Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256274006|gb|EEU08922.1| Rrp6p [Saccharomyces cerevisiae JAY291] gi|259149485|emb|CAY86289.1| Rrp6p [Saccharomyces cerevisiae EC1118] Length = 733 Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 7/151 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E +C++Q+S D VD +++ ++N L + + K+FH Sbjct: 235 IAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKL---RENLHILNEVFTNPSIVKVFH 291 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L G+ V +F T AS+ +H L L+ SK Q +DW Sbjct: 292 GAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL--PRHSLAYLLENFANFKTSKKYQLADW 349 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 LS YA +D L + Q KL Sbjct: 350 RIRPLSKPMTAYARADTHFLLNIYDQLRNKL 380 >gi|51013151|gb|AAT92869.1| YOR001W [Saccharomyces cerevisiae] Length = 733 Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 7/151 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E +C++Q+S D VD +++ ++N L + + K+FH Sbjct: 235 IAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKL---RENLHILNEVFTNPSIVKVFH 291 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L G+ V +F T AS+ +H L L+ SK Q +DW Sbjct: 292 GAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL--PRHSLAYLLENFANFKTSKKYQLADW 349 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 LS YA +D L + Q KL Sbjct: 350 RIRPLSKPMTAYARADTHFLLNIYDQLRNKL 380 >gi|217072026|gb|ACJ84373.1| unknown [Medicago truncatula] Length = 187 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I D E + L R LCI+QL+ D + I G L + K+ H Sbjct: 70 IGFDCEAVDLC-RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDC 128 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + D L++ FG+++ V T+IA L Q L D+ L Sbjct: 129 KRDSEALYFQFGIKLNNVVDTQIAYSLLEEQEGQRRLPDDYISL 172 >gi|301100864|ref|XP_002899521.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262103829|gb|EEY61881.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 1101 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 +L R Q GL +K+ L + +SK QQ SDW L+ +Q+ YAA D L L+ Sbjct: 1039 KLQRRRRRQKGLSTYIKQALELPLSKLQQKSDWERRPLTTQQVGYAALDAYCLLMLQ 1095 >gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] Length = 933 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 27/192 (14%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDG--------- 49 +TT+ E P AR A+DTET GL ++ RL + L+ PG Sbjct: 335 VTTVEALE---PWLTEARKAGLFAMDTETDGLDAQQCRLVGISLAIAPGKACYIPLDHQT 391 Query: 50 TVD-IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 T+D +R A + A L +L D KIF G+FD+AVL + P+ T + S Sbjct: 392 TLDQPVRQPAIAEIAAALNPILADPTVLKIFQNGKFDLAVLRRHQMPVIAPIDDTMLISY 451 Query: 109 LTRTYTNQHGLKDNLKEL-LGINISKAQQSSDWSADDLS------DEQLQYAASDV-VHL 160 + HG+ D L L LG + Q + + L D+ YAA D V L Sbjct: 452 AQEAGAHGHGM-DELSVLHLGHSPISYDQVTGTGRNRLPFPQVPIDKATAYAAEDADVTL 510 Query: 161 ---HALRLQFTE 169 HALR + E Sbjct: 511 RLWHALRPRLRE 522 >gi|308472106|ref|XP_003098282.1| hypothetical protein CRE_08446 [Caenorhabditis remanei] gi|308269268|gb|EFP13221.1| hypothetical protein CRE_08446 [Caenorhabditis remanei] Length = 231 Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 23/39 (58%) Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 G+ I K + SDW+ L +QL YAA D + LH + ++ Sbjct: 77 GVKIFKTETMSDWTVQTLRHDQLHYAAMDAIALHYINIK 115 >gi|260805242|ref|XP_002597496.1| hypothetical protein BRAFLDRAFT_156042 [Branchiostoma floridae] gi|229282761|gb|EEN53508.1| hypothetical protein BRAFLDRAFT_156042 [Branchiostoma floridae] Length = 505 Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 93 FGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQ 149 +G+ VR V +A R + + GL+ +++LG+ + K++ + S+W A LS+EQ Sbjct: 74 YGITVRGCVDLRHLAIRHKSLQSGKLGLQALAEQVLGVKMDKSRTVRCSNWEASKLSEEQ 133 Query: 150 LQYAASDVV 158 + YAA+D + Sbjct: 134 ITYAANDAL 142 >gi|193697404|ref|XP_001951643.1| PREDICTED: exosome component 10-like [Acyrthosiphon pisum] Length = 739 Score = 36.2 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 12/170 (7%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 V+ +A+D E + C++Q+S D +D + + + L + + K Sbjct: 228 VNELAIDLEAHSYRTYQGFTCLMQISTRNADYIIDTLYL---RDKLHVLNEIFTNPAVVK 284 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FH DI L G+ V +F T A+++ ++ GL+ LK ++ K Q Sbjct: 285 VFHGADSDIPWLQRDLGLYVVNMFDTYQAAKILNF--SRKGLEFLLKHYCNVDADKTFQL 342 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 DW LS E + YA D +L + + L ++T+ CN++ Sbjct: 343 YDWRTRPLSTEAIFYARCDTHYLLYVYDMIKKDLMA-----MSTNQCNYI 387 >gi|221114219|ref|XP_002154256.1| PREDICTED: similar to ZK1098.3 [Hydra magnipapillata] Length = 650 Score = 36.2 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 21/96 (21%) Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 NA NLV + +E EKI Y PV T ++ N+ GL Sbjct: 576 NASNLVDL--NEISEKILKY-----------------PV--TNAYLYPVQSVQNEKGLSL 614 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 + LLG ++ K Q SDW LS Q+QYA +V Sbjct: 615 LIYRLLGQSLDKTFQVSDWDKRPLSTNQIQYAGLNV 650 >gi|213408214|ref|XP_002174878.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus yFS275] gi|212002925|gb|EEB08585.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus yFS275] Length = 782 Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 11/157 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IAVD E +C++Q+S D VD + + + N+V D K K+ H Sbjct: 239 IAVDLEHHDYRSYSGFVCLMQISTRNQDWIVDTLELREELECL-NIV--FTDPKIIKVLH 295 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L FG+ + +F T A++ HGL LK+ K Q +DW Sbjct: 296 GATMDVIWLQRDFGLYLVGLFDTYYATKALGF--EGHGLAFLLKKYCQFEADKRYQMADW 353 Query: 141 SADDLSDEQLQYAASDVVHL----HALRLQFTEKLQR 173 L E L+YA SD L LR++ E+ R Sbjct: 354 RIRPLPKEMLKYAQSDTHFLLYVFDCLRVELLEQSSR 390 >gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4] gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4] Length = 1195 Score = 36.2 bits (82), Expect = 3.0, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L FGV + +F T ASR+ + L LK I+ +K Q Sbjct: 321 KVLHGSDSDIKWLQRDFGVYIVNMFDTGQASRILEYPSAS--LAFLLKFYCAIDANKKYQ 378 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 +DW L +E ++YA D +L + + +L G +L Sbjct: 379 LADWRIRKLPEEMIKYAREDTHYLLYIYDRLRNELISKGNKNL 421 >gi|326496741|dbj|BAJ98397.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326514394|dbj|BAJ96184.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 332 Score = 36.2 bits (82), Expect = 3.1, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 41/208 (19%) Query: 9 GDIPAE----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 G +P E AA+ + I D E + L R LCI+Q++ D + I G++ Sbjct: 33 GQLPVEFLEPSAAKKL-VIGFDCEGVDLC-RNGALCIMQIAFPDAVYLVDAIEGGKELVE 90 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--------------- 109 L + K+ H + D L++ FG+++ V T+IA L Sbjct: 91 ACKPALESDHVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIEEQEGKKRAYDVYI 150 Query: 110 --------TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 R + K+ ++ LL Q + W LS+ ++ A DV L Sbjct: 151 SFVSLLADPRYCGMPYPEKEEVRTLL------RQDPNFWKNRPLSEMMIRAATDDVRFLL 204 Query: 162 ALRLQFTEKLQRLG------RSDLATSC 183 + + EKL ++ RS+L C Sbjct: 205 NIHEKMMEKLSKVSSWRLAVRSELYCRC 232 >gi|308481970|ref|XP_003103189.1| hypothetical protein CRE_26689 [Caenorhabditis remanei] gi|308260294|gb|EFP04247.1| hypothetical protein CRE_26689 [Caenorhabditis remanei] Length = 89 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 23/37 (62%) Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 + ISK + S+W L D+++QYAA D V LH + + Sbjct: 50 VPISKTETMSNWCGPQLRDDKIQYAAMDAVVLHNINI 86 >gi|158291195|ref|XP_312669.4| AGAP002300-PA [Anopheles gambiae str. PEST] gi|157018260|gb|EAA07463.4| AGAP002300-PA [Anopheles gambiae str. PEST] Length = 969 Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 5/160 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHY 81 IA+D E + C++QLS T D I A ++ +++ + D K+ K+ H Sbjct: 290 IAIDLEHHSYRSYQGFTCLMQLS--TRTKDYIVDALALRDELHVLNEVFTDPKKLKVLHG 347 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 DI L G+ + +F T A+R+ + ++ GL+ LK I+ KA Q +DW Sbjct: 348 SVSDIEWLQRDLGLYLVNMFDTGEAARVLQF--SRIGLQFLLKHYCNIDTDKAFQLADWR 405 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + + ++YA D +L + + +L G S L T Sbjct: 406 IRPIPENFIEYARKDTHYLLYIYDRMRNELLEKGESLLQT 445 >gi|311246922|ref|XP_003122404.1| PREDICTED: probable exonuclease mut-7 homolog [Sus scrofa] Length = 547 Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 26/47 (55%) Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 GL ++++LG + K QQ S+W L +EQL YAA+D L Sbjct: 345 AGPRGLSLLVQQVLGKPLDKTQQLSNWDRRPLGEEQLVYAAADAYCL 391 >gi|316973270|gb|EFV56889.1| putative 3'-5' exonuclease [Trichinella spiralis] Length = 535 Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust. Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 +VQ + G ++R++ + V +L + K K+ D+ L+ G+ VR Sbjct: 76 LVQFATAFGVCILVRLSQMNTPTSSFVTVLENSKVMKVGLGIEQDVKRLYLDHGIVVRGK 135 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 F + + + + L N + + + ++K S+W A +L++ Q+QYA+SD + Sbjct: 136 FDVRYLLDVDQRNISLQTLVKNCFDHVLVKLTKVA-CSNWDATELTEAQIQYASSDAQY 193 >gi|145630436|ref|ZP_01786217.1| ribonuclease D [Haemophilus influenzae R3021] gi|144984171|gb|EDJ91608.1| ribonuclease D [Haemophilus influenzae R3021] Length = 273 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 GL ++ L I I K ++W LSD QLQYAA DV +L L Sbjct: 18 GLAKLAQQYLNIEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPL 63 >gi|308802033|ref|XP_003078330.1| 3'-5' exonuclease, putative (ISS) [Ostreococcus tauri] gi|116056782|emb|CAL53071.1| 3'-5' exonuclease, putative (ISS) [Ostreococcus tauri] Length = 1013 Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 16/86 (18%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 GL +++ G + K +Q SDW L++ Q+ YAA+D H+L L F + Sbjct: 517 GLAVLTRQVTGFTLDKKEQCSDWGKRPLTEGQIAYAAADG---HSLCLIFDK-------- 565 Query: 178 DLATSCCNFLMDRAELDLLGWENVDI 203 C ++D AE+ + E +D+ Sbjct: 566 -----CLEMILDEAEIPRVLREVIDL 586 >gi|145536632|ref|XP_001454038.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124421782|emb|CAK86641.1| unnamed protein product [Paramecium tetraurelia] Length = 529 Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 25/150 (16%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 +R+C++Q+S G IA N + KIF+ G D+ L + + Sbjct: 26 NRICLIQISDGKEIYLFDPIAL---NLEQYMREFFKNDAIKIFYSGAQDLKWLKNEYQIV 82 Query: 97 VRPVFCTKIASR---------LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSD 147 V K+ ++ L + Y +++ K L Q SDW A L++ Sbjct: 83 VNNYCDLKVLAQKEPDLSLIALWKKYCGVQFEREDKKRL---------QKSDWFARPLTE 133 Query: 148 EQLQYAASDVVHLHALR----LQFTEKLQR 173 EQL YAA D +L LR Q+TE+ Q+ Sbjct: 134 EQLFYAALDCKYLVVLREILLQQYTEEEQK 163 >gi|303284617|ref|XP_003061599.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456929|gb|EEH54229.1| predicted protein [Micromonas pusilla CCMP1545] Length = 1174 Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 29/61 (47%) Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 VR V L+ ++ GL + LG + K+Q +SDWS L+ QL YAA D Sbjct: 615 VRDVASALCLQELSGPRGHRPGLSAACEAWLGRGLDKSQTTSDWSRRPLTAAQLAYAAQD 674 Query: 157 V 157 Sbjct: 675 A 675 >gi|260802943|ref|XP_002596351.1| hypothetical protein BRAFLDRAFT_215559 [Branchiostoma floridae] gi|229281606|gb|EEN52363.1| hypothetical protein BRAFLDRAFT_215559 [Branchiostoma floridae] Length = 503 Score = 35.8 bits (81), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 ++ HGL +++ LG+ ++K +Q SDW L Q+ YA+ D L + T++++ Sbjct: 162 SDAHGLSQLVQQCLGLPLAKTEQLSDWERRPLRKAQILYASLDAYCLLEVYDVLTKRVKD 221 Query: 174 LG 175 G Sbjct: 222 AG 223 >gi|213964497|ref|ZP_03392697.1| ribonuclease D [Corynebacterium amycolatum SK46] gi|213952690|gb|EEB64072.1| ribonuclease D [Corynebacterium amycolatum SK46] Length = 433 Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 70/176 (39%), Gaps = 7/176 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTE DR ++Q +I G+K A + G V+ I H Sbjct: 45 LAVDTERASAYRYDDRAFLLQFRRRGAGTFLIDPEDGRK-AMAVFGSSVN-NLTWIIHAA 102 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ L G+ V T++A RL + L + LLG+ ++K DWS Sbjct: 103 HSDLPCL-AALGLYPTKVIDTELAGRLL--GLERVNLAALTERLLGVGLAKGHGREDWST 159 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC--NFLMDRAELDLL 196 L + L YAA DV L L + L L R + C ++R LD L Sbjct: 160 RPLPADWLDYAALDVELLIELAEVLCQALTELDRLEWLEQECERELAINRKYLDGL 215 >gi|116793719|gb|ABK26855.1| unknown [Picea sitchensis] Length = 204 Score = 35.8 bits (81), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASD 156 A +L R Q GLK KE+LG+ +SK + S+W+ L Q+QYA D Sbjct: 136 AEKLERRELKQAGLKGLAKEVLGLRLSKPKSISMSNWAWAILQHRQIQYACID 188 >gi|332261664|ref|XP_003279887.1| PREDICTED: probable exonuclease mut-7 homolog [Nomascus leucogenys] Length = 1115 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 GL ++++LG + K QQ S+W L +EQL YAA+D Sbjct: 812 GLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQLIYAAADA 851 >gi|293334477|ref|NP_001168997.1| hypothetical protein LOC100382828 [Zea mays] gi|223974363|gb|ACN31369.1| unknown [Zea mays] Length = 98 Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 GL KE+LG ++K +++S+W L+ Q +YAA D V L Sbjct: 15 GLSGLSKEILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVL 57 >gi|167751882|ref|ZP_02424009.1| hypothetical protein ALIPUT_00124 [Alistipes putredinis DSM 17216] gi|167660123|gb|EDS04253.1| hypothetical protein ALIPUT_00124 [Alistipes putredinis DSM 17216] Length = 203 Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust. Identities = 16/31 (51%), Positives = 23/31 (74%) Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASD 156 +LG +SKAQ+ S+W A L+D+Q YAA+D Sbjct: 151 VLGQRVSKAQRLSNWEAAQLTDKQQFYAATD 181 >gi|25028351|ref|NP_738405.1| hypothetical protein CE1795 [Corynebacterium efficiens YS-314] gi|23493636|dbj|BAC18605.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 413 Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 10/171 (5%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML- 70 A+ A A+DTE DR ++Q+ G GT+ + + + P L L Sbjct: 32 ADVLAGGSGPFAIDTERASGFRYDDRAFLIQIRRRGAGTL----LFDPESHRPELSRSLG 87 Query: 71 -VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 V +E I H D+ L + + +F T++A RL L ++++ + Sbjct: 88 PVLNGQEWIIHAAATDLPSLAW-LDLHPGTLFDTELAGRLAGFELVN--LAAMVEQIFDL 144 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ K + DWS L +E L YAA DV L L E L G+ D A Sbjct: 145 HLLKGHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWA 195 >gi|323144458|ref|ZP_08079061.1| putative ribonuclease D [Succinatimonas hippei YIT 12066] gi|322415773|gb|EFY06504.1| putative ribonuclease D [Succinatimonas hippei YIT 12066] Length = 384 Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 26/46 (56%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 GL +KEL+G + K +DW LS+ QL YAA DV +L + Sbjct: 130 GLNAYVKELVGAELEKDCTRTDWLYRPLSENQLIYAALDVEYLEEM 175 >gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] Length = 897 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 15/126 (11%) Query: 17 ARYVD------AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-KNAPN---- 65 AR+VD +AVDTET GL P RL V L+ +G + +AA + P Sbjct: 317 ARWVDKALERGVVAVDTETDGLDPLTCRLVGVSLAVDEGRACYVPLAAPDVRPLPADVVR 376 Query: 66 --LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN 122 L +L +K K+ +FD VL +GVR P F T +A+ L + ++ L Sbjct: 377 EVLTPLLASQKVSKVGQNLKFDYHVL-RRWGVRPEGPFFDTMVAAWLLESDAGRYNLDRL 435 Query: 123 LKELLG 128 ++ LG Sbjct: 436 AEKYLG 441 >gi|307104422|gb|EFN52676.1| hypothetical protein CHLNCDRAFT_54323 [Chlorella variabilis] Length = 529 Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 16/170 (9%) Query: 3 TIRVHEGDIPAECAA--RYV--DAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDI 53 T+ EG +PA AA R + +A+D E G P R+ ++QL+ V + Sbjct: 133 TVVAAEGQLPAALAALRRSMQDSCVAIDLEWKPEGWAGGGP--TRVALMQLASATVAVLV 190 Query: 54 IRIAAGQKNAPNLVGMLVDEKREKI-FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 G + P+L L D I F + D + TFG R +F + + Sbjct: 191 RVCRLGFRMPPSLRAFLSDPDLTFIGFSWDSSDEVKMRQTFGEGRRELFPRFLDLQQVGA 250 Query: 113 YTNQHG--LKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVV 158 HG L K +LG + K ++ S+W A LS Q+QY A D V Sbjct: 251 SLGYHGFGLAALTKRVLGFALPKCRKVTMSNWEARQLSARQVQYGALDAV 300 >gi|259507406|ref|ZP_05750306.1| ribonuclease D [Corynebacterium efficiens YS-314] gi|259165031|gb|EEW49585.1| ribonuclease D [Corynebacterium efficiens YS-314] Length = 407 Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 10/171 (5%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML- 70 A+ A A+DTE DR ++Q+ G GT+ + + + P L L Sbjct: 26 ADVLAGGSGPFAIDTERASGFRYDDRAFLIQIRRRGAGTL----LFDPESHRPELSRSLG 81 Query: 71 -VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 V +E I H D+ L + + +F T++A RL L ++++ + Sbjct: 82 PVLNGQEWIIHAAATDLPSLAW-LDLHPGTLFDTELAGRLAGFELVN--LAAMVEQIFDL 138 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ K + DWS L +E L YAA DV L L E L G+ D A Sbjct: 139 HLLKGHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWA 189 >gi|219118334|ref|XP_002179944.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408997|gb|EEC48930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 700 Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 11/161 (6%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII-RIAAGQ-KNAPNLVGMLVDEKREKIF 79 A+A D E+ C++QLS G +I +A G + L + D K+ Sbjct: 257 ALAFDVESYNKSKYTQLTCLLQLSTDHGMAYVIDPLAPGVFEEVGGLAPIFADPDIVKVG 316 Query: 80 H-YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL------LGINIS 132 H G D+ L FG+ V F T A+++ HGL + L ++ Sbjct: 317 HSIGGLDVRSLHRDFGIFVINAFDTYEAAKVL--CLESHGLAAVCEHYGMKYTDLYKSLK 374 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 Q+ DW A L+ +QY DV L LR+ L + Sbjct: 375 NEYQTCDWRARPLTGPMIQYGRFDVHFLIELRMLMIRDLTK 415 >gi|225447009|ref|XP_002268685.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 936 Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH D+ L F + V +F T A + Q L L+ G+ +K Q Sbjct: 188 KVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGVATNKLLQ 245 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 DW LS E L+YA +D H L + L + D SCC Sbjct: 246 REDWRQRPLSVEMLEYAQTDA---HYLLYIANCLIAELRQHDSENSCC 290 >gi|312385767|gb|EFR30186.1| hypothetical protein AND_00361 [Anopheles darlingi] Length = 526 Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IA+D E + C++QLS D VD + A + L + D ++ K+ H Sbjct: 231 IAIDLEHHSYRTFQGFTCLMQLSTRKKDYIVDTL---ALRDELHVLNEVFTDPRKLKVLH 287 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 DI L G+ + +F T A+R+ + ++ GL+ LK I KA Q +DW Sbjct: 288 GAISDIEWLQRDLGLYLVNMFDTGEAARVLQF--SRIGLQFLLKHYCNIETDKAYQLADW 345 Query: 141 SADDLSDEQLQYAASDVVHL 160 L ++YA D +L Sbjct: 346 RMRPLPPAFIEYARKDTHYL 365 >gi|224023974|ref|ZP_03642340.1| hypothetical protein BACCOPRO_00691 [Bacteroides coprophilus DSM 18228] gi|224017196|gb|EEF75208.1| hypothetical protein BACCOPRO_00691 [Bacteroides coprophilus DSM 18228] Length = 204 Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL-QFTEKLQRLG 175 L G ISK Q+ S+W A+ L++ Q YAA+D +R+ ++ E+L+R G Sbjct: 149 LFGEKISKTQRLSNWEAETLTEAQQLYAATDA--WACVRIYEYLEELRRTG 197 >gi|28493361|ref|NP_787522.1| ribonuclease D [Tropheryma whipplei str. Twist] gi|28476402|gb|AAO44491.1| ribonuclease D [Tropheryma whipplei str. Twist] Length = 391 Score = 35.4 bits (80), Expect = 5.2, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H DI L G+ + +F T+IA RL + L ++ + + + K Sbjct: 90 EVVIHAAINDIKSL-KRVGIHITNLFDTEIACRLLNI--PKVNLSYVTEKFINVKLRKEY 146 Query: 136 QSSDWSADDLSDEQLQYAASDVVHL 160 + +WSA L+ + L+YA DV HL Sbjct: 147 STVNWSARPLNKKYLEYAEGDVKHL 171 >gi|313220222|emb|CBY31081.1| unnamed protein product [Oikopleura dioica] Length = 597 Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 7/63 (11%) Query: 118 GLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRL 174 GL + +++LG ++K + S+W AD LS+EQ YAA D V LQ KL Q L Sbjct: 172 GLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAV----CALQILGKLIQEL 227 Query: 175 GRS 177 G S Sbjct: 228 GES 230 >gi|242000324|ref|XP_002434805.1| conserved hypothetical protein [Ixodes scapularis] gi|215498135|gb|EEC07629.1| conserved hypothetical protein [Ixodes scapularis] Length = 492 Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 GL + + LLG+ ++K +Q SDW L Q++YAA D L LQ E+L Sbjct: 393 GLSELTRTLLGLPLNKDEQCSDWENRPLRSSQMRYAALDAFCL----LQVYEEL 442 >gi|294786964|ref|ZP_06752218.1| HRDC:3-5 exonuclease [Parascardovia denticolens F0305] gi|315226603|ref|ZP_07868391.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] gi|294485797|gb|EFG33431.1| HRDC:3-5 exonuclease [Parascardovia denticolens F0305] gi|315120735|gb|EFT83867.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] Length = 432 Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 ++ G++ +F T+ A+RL + GL + L + ++K ++DWS L + Sbjct: 109 YFDLGLKPAGLFDTERAARLLGQV--RFGLAAVTERYLDLTLAKEHSAADWSYRPLDRDM 166 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 YAA DV L L + L++ G+ D A +L+++ + Sbjct: 167 RIYAALDVEVLIELEGLMKKDLKKAGKWDWAQEDFIYLLNKGK 209 >gi|325068901|ref|ZP_08127574.1| ribonuclease D [Actinomyces oris K20] Length = 289 Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 115 NQH-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 QH GL ++E LG+ ++K ++DWS L L YAA DV L LR +L+ Sbjct: 4 RQHVGLGAVIEETLGLRLAKDHAAADWSTRPLPASWLTYAALDVELLIDLRDALATELEA 63 Query: 174 LGRSDLAT 181 G+ A Sbjct: 64 AGKDQWAA 71 >gi|313234915|emb|CBY24860.1| unnamed protein product [Oikopleura dioica] Length = 812 Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 7/63 (11%) Query: 118 GLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRL 174 GL + +++LG ++K + S+W AD LS+EQ YAA D V LQ KL Q L Sbjct: 200 GLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAV----CALQILGKLIQEL 255 Query: 175 GRS 177 G S Sbjct: 256 GES 258 >gi|224051280|ref|XP_002200511.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 1 [Taeniopygia guttata] Length = 621 Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust. Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 8/143 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR----IAAGQKNAPNLVGMLVDEKREKI 78 + +D E + + + + + ++Q++ G ++R +A+GQ L+ ++ D K+ Sbjct: 107 LGIDCEWVSVEGKANPVSLLQMASSSGLCILVRLPRLVASGQTLPKTLLDIMADSAVLKV 166 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT--YTNQHGLKDNLKELLGINISKAQ- 135 D L + +G+ V+ + + R N LK +++L + K+ Sbjct: 167 GVGCWEDACKLLHDYGLAVKGSMDLRYLAMRQRKDLLHNCLSLKSLAEKVLNFPLDKSPH 226 Query: 136 -QSSDWSADDLSDEQLQYAASDV 157 + S+W A++L+ +Q+ YAA D Sbjct: 227 VRCSNWEAEELTQDQVLYAARDA 249 >gi|28572529|ref|NP_789309.1| ribonuclease [Tropheryma whipplei TW08/27] gi|28410661|emb|CAD67047.1| putative ribonuclease [Tropheryma whipplei TW08/27] Length = 360 Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H DI L G+ + +F T+IA RL + L ++ + + + K Sbjct: 59 EVVIHAAINDIKSL-KRVGIHITNLFDTEIACRLLNI--PKVNLSYVTEKFINVKLRKEY 115 Query: 136 QSSDWSADDLSDEQLQYAASDVVHL 160 + +WSA L+ + L+YA DV HL Sbjct: 116 STVNWSARPLNKKYLEYAEGDVKHL 140 >gi|289743943|gb|ADD20719.1| putative 3'-5' exonuclease [Glossina morsitans morsitans] Length = 514 Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 4/137 (2%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 + D E + + R + ++QL+ +G + R+ +L +L D+ K+ Sbjct: 81 VLGFDCEWITIGRVRRPVALLQLASPNGFCGLFRLCHMDHIPESLKNLLADKDIIKVGVD 140 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSD 139 D L +G+ V F + + + R GL+ + LL ++ K S+ Sbjct: 141 PAGDARKLRADYGIYVASTFDIRYLAVMIRC--KPLGLEKLSRSLLNVDFVKPWYIARSN 198 Query: 140 WSADDLSDEQLQYAASD 156 W D L D+Q++YAA D Sbjct: 199 WEFDKLDDDQVEYAAKD 215 >gi|313216815|emb|CBY38052.1| unnamed protein product [Oikopleura dioica] Length = 680 Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 7/63 (11%) Query: 118 GLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRL 174 GL + +++LG ++K + S+W AD LS+EQ YAA D V LQ KL Q L Sbjct: 133 GLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAV----CALQILGKLIQEL 188 Query: 175 GRS 177 G S Sbjct: 189 GES 191 >gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera] Length = 935 Score = 35.0 bits (79), Expect = 6.6, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 5/108 (4%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH D+ L F + V +F T A + Q L L+ G+ +K Q Sbjct: 188 KVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGVATNKLLQ 245 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 DW LS E L+YA +D H L + L + D SCC Sbjct: 246 REDWRQRPLSVEMLEYAQTDA---HYLLYIANCLIAELRQHDSENSCC 290 >gi|297626438|ref|YP_003688201.1| ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922203|emb|CBL56771.1| Ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 445 Score = 35.0 bits (79), Expect = 6.6, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + L +++ G+++ K Sbjct: 116 EWIIHAATQDLPCLV-EIGLYPSRLFDTELAGRLL--GFPRVSLGTMIEQHFGVHLLKEH 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++DWS L + + YAA DV L LR ++L G+ + A L+D Sbjct: 173 SAADWSRRPLPPDWIAYAALDVELLIELRNLVADELVAAGKKEWADEEFAHLVD 226 >gi|294775292|ref|ZP_06740815.1| 3'-5' exonuclease [Bacteroides vulgatus PC510] gi|294450869|gb|EFG19346.1| 3'-5' exonuclease [Bacteroides vulgatus PC510] Length = 216 Score = 35.0 bits (79), Expect = 6.7, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKDN-----LKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 Y + G+ D L G ISK+Q+ S+W A+ LS+ Q YAA+D Sbjct: 131 YVGRFGIADRSLQKIFANLFGQKISKSQRLSNWEAEVLSEGQKLYAATD 179 >gi|255089332|ref|XP_002506588.1| predicted protein [Micromonas sp. RCC299] gi|226521860|gb|ACO67846.1| predicted protein [Micromonas sp. RCC299] Length = 1038 Score = 35.0 bits (79), Expect = 6.7, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 91 YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL 150 + G R+ V + + + + GL + +LG + K +Q SDW L+ +Q+ Sbjct: 712 HALGTRIVDVKALALCAFPDKQKLTRVGLATLVASVLGAYVDKTEQCSDWERRPLTTDQV 771 Query: 151 QYAASDVVHLHALRLQF 167 YAA+D H L + F Sbjct: 772 DYAAADA---HVLTVLF 785 >gi|296191265|ref|XP_002743563.1| PREDICTED: probable exonuclease mut-7 homolog [Callithrix jacchus] Length = 1009 Score = 35.0 bits (79), Expect = 6.8, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 GL ++++LG + K QQ S+W L +EQL YAA+D Sbjct: 536 GLSLLVQQVLGTTLDKTQQLSNWDRRPLFEEQLIYAAADA 575 >gi|150006113|ref|YP_001300857.1| hypothetical protein BVU_3624 [Bacteroides vulgatus ATCC 8482] gi|149934537|gb|ABR41235.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] Length = 216 Score = 35.0 bits (79), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Query: 113 YTNQHGLKDN-----LKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 Y + G+ D L G ISK+Q+ S+W A+ LS+ Q YAA+D Sbjct: 131 YVGRFGIADRSLQKIFANLFGQKISKSQRLSNWEAEVLSEGQKLYAATD 179 >gi|159478793|ref|XP_001697485.1| 3'-5' exonuclease [Chlamydomonas reinhardtii] gi|158274364|gb|EDP00147.1| 3'-5' exonuclease [Chlamydomonas reinhardtii] Length = 253 Score = 35.0 bits (79), Expect = 6.9, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 W L+ EQ++YA+ DV++LH L QF LQ Sbjct: 179 WDRRPLTQEQVRYASDDVLYLHHLHAQFKAALQ 211 >gi|311748079|ref|ZP_07721864.1| 3'- 5' exonuclease domain protein [Algoriphagus sp. PR1] gi|126574723|gb|EAZ79104.1| 3'- 5' exonuclease domain protein [Algoriphagus sp. PR1] Length = 201 Score = 35.0 bits (79), Expect = 6.9, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 25/31 (80%) Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASD 156 +L + ISK++Q S+W A+ L+++Q +YAA+D Sbjct: 148 VLKMRISKSEQVSNWEAEVLTEKQQRYAATD 178 >gi|313157179|gb|EFR56609.1| 3'-5' exonuclease [Alistipes sp. HGB5] Length = 203 Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 7/65 (10%) Query: 116 QHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL--RLQFT 168 + G++D +L++L I +SKAQ+ S+W A L+D+Q YAA+D A+ +L T Sbjct: 136 EWGIEDKSLRKLSAIVLRQRVSKAQRLSNWEAATLTDKQKLYAATDAWVCTAIYDKLLHT 195 Query: 169 EKLQR 173 K++R Sbjct: 196 PKIKR 200 >gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34] gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus metallidurans CH34] Length = 934 Score = 35.0 bits (79), Expect = 7.1, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 24/156 (15%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------AGQKNAPNLV--------- 67 +A+DTET L P +L + LS G I +A AG +N L Sbjct: 354 VAIDTETTSLDPMLAQLVGISLSVEPGAAAYIPVAHRGPDVAGLENHGQLSREYVLERMR 413 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 G L D R K+ + ++D V F GV +R + T + S + +Y N HG+ + L Sbjct: 414 GWLEDPARPKLGQHLKYDSHV-FANHGVALRGIAHDTMLESYVLASYRN-HGMDSLAERL 471 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASD 156 L + ++ A+ + +Q+ +YAA D Sbjct: 472 LSLKTITYEEVCGKGANQIGFDQIDLPRATEYAAED 507 >gi|299473101|emb|CBN77494.1| 3\'-5\' exonuclease family protein [Ectocarpus siliculosus] Length = 192 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 9/92 (9%) Query: 105 IASRLTRTYTNQHGLKDNL------KELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 + ++LT N G+ +L LG ++SK QQ S W+ L Q+ YAA D Sbjct: 102 LNTKLTGGACNDQGIPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDA- 160 Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 L ALR+ F L LG D+ C + R Sbjct: 161 -LVALRV-FDALLLALGSLDVGELCTTWTPRR 190 >gi|164656377|ref|XP_001729316.1| hypothetical protein MGL_3351 [Malassezia globosa CBS 7966] gi|159103207|gb|EDP42102.1| hypothetical protein MGL_3351 [Malassezia globosa CBS 7966] Length = 348 Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 18/157 (11%) Query: 35 RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94 R + + QL+ + + +I ++ ++ LV ML D K R D++ L FG Sbjct: 140 RMGKTAVAQLATAND-IFVIHLSQMKRLPDTLVAMLQDPHILKSGVAVRQDLSKLQRDFG 198 Query: 95 VRVRPVF-CTKIASRLTRTYTNQH----GLKDNLKELLGINISKAQ-QSSDWSADDLSDE 148 + ++IA +L N L+D LG +++K ++S W+ L++E Sbjct: 199 IETCGALELSRIAWKLDPERWNGRRALISLRDLCAAYLGCDLAKGPTRTSSWTQVPLTNE 258 Query: 149 QLQYAASD-----------VVHLHALRLQFTEKLQRL 174 Q+ YAASD ++ HA R +E Q+L Sbjct: 259 QITYAASDAYVSLELAHAMLLDAHAKRPMSSEDAQKL 295 >gi|323345482|ref|ZP_08085705.1| 3'-5' exonuclease domain protein [Prevotella oralis ATCC 33269] gi|323093596|gb|EFZ36174.1| 3'-5' exonuclease domain protein [Prevotella oralis ATCC 33269] Length = 212 Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust. Identities = 15/26 (57%), Positives = 21/26 (80%) Query: 131 ISKAQQSSDWSADDLSDEQLQYAASD 156 ISK QQ ++W AD L+D+Q +YAA+D Sbjct: 154 ISKRQQLTNWDADVLNDKQKEYAATD 179 >gi|308484057|ref|XP_003104229.1| hypothetical protein CRE_24937 [Caenorhabditis remanei] gi|308258198|gb|EFP02151.1| hypothetical protein CRE_24937 [Caenorhabditis remanei] Length = 228 Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 26/39 (66%) Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 +G ISK++ S+W+A L ++Q++YA D + LH + L Sbjct: 138 IGAPISKSKTMSNWTAWRLREDQIRYAMMDAIVLHYINL 176 >gi|223997400|ref|XP_002288373.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975481|gb|EED93809.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 782 Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 21/35 (60%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 GL + LG + KA+Q SDWSA LS EQ +Y Sbjct: 723 GLSRACEHYLGKQLDKAEQCSDWSARPLSTEQREY 757 >gi|149737203|ref|XP_001500310.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 1 [Equus caballus] Length = 625 Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 13/159 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---AGQKNAPN-LVGMLVDEKREKI 78 + +D E + L + L ++Q++ G ++R+ G K P L+ +L D+ K+ Sbjct: 109 LGIDCEWVNLEGKASPLSLLQMASPSGFCVLVRLPKLVCGGKTLPKTLLDILADDTILKV 168 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT--YTNQHGLKDNLKELLGINISKAQ- 135 D + L +G+ V+ + + R N LK + +L + K+ Sbjct: 169 GVGCSEDASKLLQDYGLVVKGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLL 228 Query: 136 -QSSDWSADDLSDEQLQYAASD-----VVHLHALRLQFT 168 + S+W A++L+++Q+ YAA D + LH L F+ Sbjct: 229 LRCSNWDAENLTEDQVIYAARDAQISVALFLHLLGYPFS 267 >gi|294868076|ref|XP_002765369.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983] gi|239865388|gb|EEQ98086.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983] Length = 1005 Score = 34.7 bits (78), Expect = 8.5, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 +Q GL + +K LG +SK + S+W LS Q++YA+ D + L L+ EK+Q Sbjct: 579 HQRGLTEVVKYFLGKPLSKVMRLSNWRRRPLSYRQVEYASLDAIVL----LKCIEKIQ 632 >gi|219126108|ref|XP_002183306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405062|gb|EEC45006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 311 Score = 34.7 bits (78), Expect = 8.5, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 13/101 (12%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR------TYTNQHGL 119 L+ +L + K+ H DIA L FG+ + +F T A+R + Y QH + Sbjct: 205 LLPVLTNPDVVKVLHGADSDIAWLQRDFGLYIVNLFDTMRAARALKFPRASYAYVLQHYV 264 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 G++ K+ Q +DW L + QYA D +L Sbjct: 265 D-------GLHADKSAQLADWRVRPLPEALQQYAIQDTAYL 298 >gi|118099131|ref|XP_415556.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 865 Score = 34.7 bits (78), Expect = 8.5, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + GL ++ +LG + K +Q S+W L +EQ+ YAASD L L+ EKL Sbjct: 525 EKGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCL----LEVYEKL 576 >gi|225450638|ref|XP_002278277.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296089752|emb|CBI39571.3| unnamed protein product [Vitis vinifera] Length = 586 Score = 34.7 bits (78), Expect = 8.7, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD---VVHL 160 GL K++LG ++K +++S+W LS QL+YAA D +VH+ Sbjct: 480 GLSGLAKKVLGAGLNKTRRNSNWEQRPLSQHQLEYAALDAAVLVHI 525 >gi|71024099|ref|XP_762279.1| hypothetical protein UM06132.1 [Ustilago maydis 521] gi|46101781|gb|EAK87014.1| hypothetical protein UM06132.1 [Ustilago maydis 521] Length = 1027 Score = 34.7 bits (78), Expect = 8.7, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 5/140 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 V+ IA+D E + +C++QLS GD +D + Q +A L + + K Sbjct: 360 VNEIAIDLEHHSYRTYQGIVCLMQLSTRWGDWIIDTLSDDVRQ-HAELLNSSFTNPDKVK 418 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+ + +F T A+ + + HGL + + K Q Sbjct: 419 VLHGANHDVLWLQRDLGLYLVNLFDTYHATNVLMFPS--HGLNYLMARYCNFDADKRYQL 476 Query: 138 SDWSADDLSDEQLQYAASDV 157 +DW L E L YA SD Sbjct: 477 ADWRIRPLPKEMLYYARSDT 496 >gi|302673415|ref|XP_003026394.1| hypothetical protein SCHCODRAFT_114457 [Schizophyllum commune H4-8] gi|300100076|gb|EFI91491.1| hypothetical protein SCHCODRAFT_114457 [Schizophyllum commune H4-8] Length = 357 Score = 34.7 bits (78), Expect = 8.8, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 24/47 (51%) Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 T+ L D + +G+ I K Q SDW L++EQ+ YA D L Sbjct: 166 TSHISLDDMARITVGVRIMKEMQRSDWGTSVLTEEQIDYALIDAYML 212 >gi|301781518|ref|XP_002926188.1| PREDICTED: LOW QUALITY PROTEIN: probable exonuclease mut-7 homolog [Ailuropoda melanoleuca] Length = 849 Score = 34.7 bits (78), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 27/43 (62%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 GL ++++LG + K+QQ S+W LS+ QL YAA+D L Sbjct: 525 GLSLLVQQVLGKPLDKSQQLSNWDRRPLSEGQLVYAAADAYCL 567 >gi|242087595|ref|XP_002439630.1| hypothetical protein SORBIDRAFT_09g017250 [Sorghum bicolor] gi|241944915|gb|EES18060.1| hypothetical protein SORBIDRAFT_09g017250 [Sorghum bicolor] Length = 562 Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 GL KE+LG ++K++++S+W L+ Q +YAA D V L Sbjct: 479 GLSGLSKEILGAGLNKSRRNSNWEQRPLTQNQKEYAALDAVVL 521 >gi|118395219|ref|XP_001029962.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89284244|gb|EAR82299.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 1087 Score = 34.3 bits (77), Expect = 9.4, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 4/156 (2%) Query: 39 LCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 +C +QLS + +DI+ ++ + + +L + K K+FH G D+ +L Sbjct: 915 ICTLQLSTLSSNFVIDILNLS--KSVSVHLKSIFESPKFVKVFHGGETDLKLLKKDLNFN 972 Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 + +F T A L ++ L N+ K Q+SDW L L YA D Sbjct: 973 LVNIFDTAKAYLKQNKGAGSVSLSSLSQQYLNYNVDKQYQTSDWRIRPLPKPMLNYAMYD 1032 Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 L + + S +A SC + + E Sbjct: 1033 SFITLILFFVMKSTISQEDLSIIAISCNKMCIKQLE 1068 >gi|326930167|ref|XP_003211223.1| PREDICTED: probable exonuclease mut-7 homolog [Meleagris gallopavo] Length = 916 Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + GL ++ +LG + K +Q S+W L +EQ+ YAASD L + + + + G Sbjct: 525 EKGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCLLEVYEKLCKDPESFG 584 Query: 176 -RSDLATS 182 SDL S Sbjct: 585 LSSDLTES 592 >gi|222637126|gb|EEE67258.1| hypothetical protein OsJ_24424 [Oryza sativa Japonica Group] Length = 949 Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 16/202 (7%) Query: 8 EGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKN 62 E D E AR +D A AVDTE L ++Q+S D +D I A Sbjct: 149 ETDAQLEDLARLLDDEKAFAVDTEQHSLRSFLGYTALMQISTQKADYLIDTI---ALHDV 205 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L + + KIFH D+ L F + V +F T A + Q L Sbjct: 206 MSILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQKSLAYL 263 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDLA 180 L+ G+ K Q DW L+ E +QYA D +L + +L + SD Sbjct: 264 LELYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAKTYDASDSP 323 Query: 181 TSCCNFLMD---RAELDLLGWE 199 NF + R+ +DL+ W+ Sbjct: 324 NDKINFFFEASHRSNMDLV-WK 344 >gi|313242411|emb|CBY34559.1| unnamed protein product [Oikopleura dioica] Length = 420 Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 3/138 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVD E + C+VQ+S I+ A ++ L + + K KIFH Sbjct: 278 LAVDLEHHRYRSYQGFTCLVQISSRQKDY-ILDPLAVWEDMYKLNEVFANPKIVKIFHGS 336 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ L FGV V +F T A++ + + L L+ I + K Q +DW Sbjct: 337 RNDMLWLQRDFGVYVVNLFDTFFAAK--KLDLAKKSLDYLLQHYCKIRLDKRFQLADWRM 394 Query: 143 DDLSDEQLQYAASDVVHL 160 + L+YA D +L Sbjct: 395 RPIPPNMLRYARQDTHYL 412 >gi|240103869|ref|YP_002960178.1| hypothetical protein TGAM_1812 [Thermococcus gammatolerans EJ3] gi|239911423|gb|ACS34314.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3] Length = 146 Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 25/38 (65%) Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI 86 TVD++ + +G+ + P+LVG+LV + +++ FDI Sbjct: 13 ATVDLVSLFSGENSEPHLVGILVARSNRRSYNFSLFDI 50 Searching..................................................done Results from round 2 >gi|254780636|ref|YP_003065049.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62] gi|254040313|gb|ACT57109.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 324 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 207/207 (100%), Positives = 207/207 (100%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ Sbjct: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK Sbjct: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA Sbjct: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 TSCCNFLMDRAELDLLGWENVDIFSHS Sbjct: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 >gi|90421943|ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18] gi|90103957|gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18] Length = 204 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 119/205 (58%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 2 TIRLHRGDLPD--LSRYTDSVAIDTETMGLNPHRDRLCVVQLSNGDGSADVVQIPVGHSD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L+ GV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKKLLGDPAITKIFHFARFDLAALYNALGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E+LG+++SK QQSSDW A LSD QL YAASDV+HLH LR + L R GR++LA + Sbjct: 120 VREVLGVDLSKQQQSSDWGAQSLSDAQLAYAASDVLHLHGLRTRLDAMLAREGRTELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDL GW DIF+HS Sbjct: 180 CFDFLPTRAKLDLSGWAEQDIFAHS 204 >gi|91974656|ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5] gi|91681112|gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5] Length = 204 Score = 308 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 118/205 (57%), Positives = 152/205 (74%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY +++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 2 TIRLHRGDLPD--LSRYTNSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGHSD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L+ FGV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKKLLGDPTVVKIFHFARFDLAALYNAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL +++SK QQSSDW A+ LSD QL YAASDV+HLH LR + L R R+DLA + Sbjct: 120 VRELLNVDLSKQQQSSDWGAETLSDAQLAYAASDVLHLHGLREKLDAMLARENRTDLAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ LDL GW DIF+HS Sbjct: 180 CFGFLPHRSRLDLDGWSEEDIFAHS 204 >gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53] gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53] Length = 204 Score = 308 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 117/205 (57%), Positives = 152/205 (74%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G Sbjct: 2 TIRLHRGDLPD--LSRYTDSVAIDTETMGLNPHRDRLCVVQLSNGDGSADVVQIPLGHTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD++ L GV +P++CTKIASRL RTYT++HGLKD Sbjct: 60 APNLKKLLGDPAVTKIFHFARFDLSALSNALGVMPQPIYCTKIASRLCRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E+LGI++SK QQSSDW A +L+D QL YAASDV+HLHALR + L R GR+ +A + Sbjct: 120 VREVLGIDLSKQQQSSDWGAQNLTDAQLAYAASDVLHLHALRARLDAMLAREGRTAMAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA LDL GW N DIF+HS Sbjct: 180 CFDFLPTRAMLDLSGWNNEDIFAHS 204 >gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5] gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5] Length = 204 Score = 306 bits (786), Expect = 8e-82, Method: Composition-based stats. Identities = 123/205 (60%), Positives = 153/205 (74%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY ++A+DTETLGL P RDRLC+VQLS GDGT D+++I AG + Sbjct: 2 TIRLHRGDLPD--LSRYTHSVAIDTETLGLNPHRDRLCVVQLSNGDGTADVVQIPAGHTD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D K+FH+ RFDIAVL + FGV +P++CTKIAS+L RTYT++HGLKD Sbjct: 60 APNLKKLLADPMVTKLFHFARFDIAVLEHAFGVMTQPIYCTKIASKLVRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLG+ ISK QQSSDW A+ LS+ QL YAASDV+HLHALR + L R R DLA S Sbjct: 120 VRELLGVEISKQQQSSDWGAEKLSEAQLTYAASDVLHLHALREKLDTMLARENRMDLAKS 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW+ DIF+HS Sbjct: 180 CFEFLPTRARLDLQGWDETDIFAHS 204 >gi|316931442|ref|YP_004106424.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1] gi|315599156|gb|ADU41691.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1] Length = 211 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY ++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 9 TIRLHRGDLPD--LSRYTHSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPLGATD 66 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L+ FGV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 67 APNLKKLLGDPAVVKIFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 126 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLGI++SK QQSSDW A+ LSD QL YAASDV+HLHALR + L R GR+DLA + Sbjct: 127 VRELLGIDLSKQQQSSDWGAESLSDAQLAYAASDVLHLHALRDKLDTMLAREGRTDLAAA 186 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW DIF+HS Sbjct: 187 CFGFLPVRARLDLDGWSEEDIFAHS 211 >gi|86747785|ref|YP_484281.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2] gi|86570813|gb|ABD05370.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2] Length = 204 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 120/205 (58%), Positives = 150/205 (73%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 2 TIRLHRGDLPD--LTRYNDSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGHSD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L GV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKKLLGDPNILKIFHFARFDLAALSNALGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL +++SK QQSSDW AD LSD QL YAASDV+HLHALR + L R R++LA + Sbjct: 120 VRELLNVDLSKQQQSSDWGADTLSDAQLAYAASDVLHLHALRDKLDAMLARENRTELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW DIF+HS Sbjct: 180 CFGFLPHRARLDLGGWSEEDIFAHS 204 >gi|299133324|ref|ZP_07026519.1| 3'-5' exonuclease [Afipia sp. 1NLS2] gi|298593461|gb|EFI53661.1| 3'-5' exonuclease [Afipia sp. 1NLS2] Length = 204 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 121/205 (59%), Positives = 152/205 (74%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY ++A+DTETLGL P RDRLC+VQLS GDG+ D+++I AG + Sbjct: 2 TIRLHRGDLPD--LSRYTHSVAIDTETLGLNPHRDRLCVVQLSNGDGSADVVQIPAGHTD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D K+FH+ RFDIAVL++ FGV +PV+CTKIAS+L RTYT++HGLKD Sbjct: 60 APNLKKLLGDPAITKLFHFARFDIAVLYHAFGVMAQPVYCTKIASKLVRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E+LG+ ISK QQSSDW A LS+ QL YAASDV+HLHALR + L R R LA + Sbjct: 120 VREMLGVEISKQQQSSDWGAASLSEAQLSYAASDVLHLHALRDKLDAMLAREDREPLAKA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GWE DIF+HS Sbjct: 180 CFEFLPTRARLDLQGWEETDIFAHS 204 >gi|315122172|ref|YP_004062661.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495574|gb|ADR52173.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 209 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 166/206 (80%), Positives = 183/206 (88%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MTTIRVH GDIP EC ARY IAVDTETLGL+PRRDRLC+VQLSPGDGT DIIRIAA Q Sbjct: 1 MTTIRVHNGDIPTECIARYTGPIAVDTETLGLIPRRDRLCVVQLSPGDGTADIIRIAAEQ 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 KNAPNLV ML +E +EKIFHY RFDIAVLFYTFGVRV+P+FCTKIASRLTRTY ++HGLK Sbjct: 61 KNAPNLVTMLANETQEKIFHYARFDIAVLFYTFGVRVKPIFCTKIASRLTRTYIDRHGLK 120 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 DNL+ELLG++ISK QQ SDWS DDLS EQLQYAASDVVHLHALR +F KLQ LGRSD+A Sbjct: 121 DNLRELLGVDISKKQQLSDWSEDDLSHEQLQYAASDVVHLHALREKFIAKLQSLGRSDVA 180 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 ++C NFLM RAELDLLGW+N+DIFSH Sbjct: 181 SACFNFLMSRAELDLLGWDNIDIFSH 206 >gi|92115811|ref|YP_575540.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14] gi|91798705|gb|ABE61080.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14] Length = 206 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 120/205 (58%), Positives = 150/205 (73%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P + RY + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ+ Sbjct: 2 TIRLHRGDLPDQDLKRYTHSAAIDTETMGLNPHRDRLCVVQMSPGDGSADVIQIAQGQRE 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L FGV +PV+CTKIASRL RTYT++HGLKD Sbjct: 62 APNLKQLLADPTIVKIFHFARFDLAALSNAFGVMPQPVYCTKIASRLIRTYTDRHGLKDL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL I +SK QQSSDW A LSD QL YAASDV+HLHALR + L R R+ +A + Sbjct: 122 VRELLNIELSKQQQSSDWGAQTLSDAQLAYAASDVLHLHALRDKLDAMLARENRTGMAQA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDL GW DIF+H+ Sbjct: 182 CFEFLPTRAKLDLSGWGAEDIFAHA 206 >gi|148251746|ref|YP_001236331.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. BTAi1] gi|146403919|gb|ABQ32425.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. BTAi1] Length = 204 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 120/205 (58%), Positives = 155/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+R+H GD+P +RY ++A+DTET+GL P RDRLC+VQLSPGDG+ D+++I G + Sbjct: 2 TVRLHRGDLPD--LSRYTSSVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L + KIFH+ RFD+A LF+TFGV +PV+CTKIASRL RTYT++HGLKD Sbjct: 60 APNLKALLANPAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL +++SK QQSSDW AD+LS+ QL YAASDV+HLHALR + L R GR LA + Sbjct: 120 VRELLNVDLSKQQQSSDWGADNLSEPQLAYAASDVLHLHALREKLDVMLAREGRLGLAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL G+E DIF+HS Sbjct: 180 CFAFLPHRATLDLGGFEAEDIFAHS 204 >gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1] gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1] Length = 204 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY +++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 2 TIRLHRGDLPD--LSRYTNSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGATD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L+ FGV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKKLLGDPAVVKIFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLGI++SK QQSSDW AD LSD QL YAASDV+HLHALR + L R R+DLA + Sbjct: 120 VRELLGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDKLDTMLARENRTDLAAA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW DIF+HS Sbjct: 180 CFGFLPIRARLDLDGWSEEDIFAHS 204 >gi|27375830|ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium japonicum USDA 110] gi|27348968|dbj|BAC45984.1| blr0719 [Bradyrhizobium japonicum USDA 110] Length = 204 Score = 304 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 117/205 (57%), Positives = 155/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+R+H GD+P +RY A+A+DTET+GL P RDRLC+VQLSPGDG+ D+++I G + Sbjct: 2 TVRLHRGDLPD--LSRYTGAVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L + KIFH+ RFD+AVL+ +FGV P++CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKALLANPAITKIFHFARFDVAVLYQSFGVMTGPIYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E+L +++SK QQSSDW +D L++ QL YAASDV+HLHALR + L R GR+ LA + Sbjct: 120 VREVLNVDLSKQQQSSDWGSDSLTEPQLAYAASDVLHLHALRERLDAMLVREGRTGLAKA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA LDL GW DIF+HS Sbjct: 180 CFDFLPTRALLDLQGWAEEDIFAHS 204 >gi|75674370|ref|YP_316791.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255] gi|74419240|gb|ABA03439.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255] Length = 206 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 125/205 (60%), Positives = 155/205 (75%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P + ARY + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ++ Sbjct: 2 TIRLHRGDLPHQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQRD 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL+ +L D KIFH+ RFD+A L+ FGV RPV+CTKIASRL RTYT++HGLKD Sbjct: 62 APNLIKLLKDPAIVKIFHFARFDLAALYNAFGVMPRPVYCTKIASRLIRTYTDRHGLKDL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL I++SK QQSSDW + LSD QL YAASDV+HLHALR + L R RS LA + Sbjct: 122 VRELLSIDLSKQQQSSDWGSPTLSDAQLAYAASDVLHLHALRDKLEATLAREDRSALAQA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GWE DIF+HS Sbjct: 182 CFEFLPSRAMLDLAGWETEDIFAHS 206 >gi|39933126|ref|NP_945402.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009] gi|39652751|emb|CAE25490.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009] Length = 204 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 124/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P +RY ++A+DTET+GL P RDRLC+VQLS GDG+ D+++I G + Sbjct: 2 TIRLHRGDLPD--LSRYTHSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGATD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L+ TFGV +PV+CTKIASRLTRTYT++HGLKD Sbjct: 60 APNLKKLLGDPAVVKIFHFARFDLAALYKTFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLGI++SK QQSSDW AD LSD QL YAASDV+HLHALR + L R R+DLA + Sbjct: 120 VRELLGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDRLDTMLARENRTDLAAA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW DIF+HS Sbjct: 180 CFGFLPVRARLDLDGWSEEDIFAHS 204 >gi|222147114|ref|YP_002548071.1| ribonuclease D [Agrobacterium vitis S4] gi|221734104|gb|ACM35067.1| ribonuclease D [Agrobacterium vitis S4] Length = 208 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 147/206 (71%), Positives = 173/206 (83%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +TIR HEGDI +E AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIA GQ+ Sbjct: 3 STIRYHEGDISSEDAARYTRAIAIDTETLGLIPRRDRLCVVQLSPGDGTADVIRIAPGQR 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D REKIFHYGRFDIAVLF+TFGV PVFCTKIASRL+RTYT++HGLKD Sbjct: 63 QAPNLTALLEDPTREKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L +++SKAQQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR D AT Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLVRDGRMDHAT 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFEFLPTRAKLDLLGWEETDIFAHS 208 >gi|190889732|ref|YP_001976274.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|190695011|gb|ACE89096.1| ribonuclease III protein [Rhizobium etli CIAT 652] Length = 208 Score = 301 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 147/206 (71%), Positives = 170/206 (82%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI A AARY A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 3 ATIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL+RTYT++HGLKD Sbjct: 63 EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L ++ISK QQSSDW A+ LS QL+YAASDV++LHALR + T +L R GR D AT Sbjct: 123 NLKEMLDVDISKTQQSSDWGAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHAT 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFAFLPTRAKLDLLGWEEADIFAHS 208 >gi|222084303|ref|YP_002542832.1| RNAse D protein [Agrobacterium radiobacter K84] gi|221721751|gb|ACM24907.1| RNAse D protein [Agrobacterium radiobacter K84] Length = 208 Score = 301 bits (771), Expect = 5e-80, Method: Composition-based stats. Identities = 149/206 (72%), Positives = 170/206 (82%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI A AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIA+GQ Sbjct: 3 ATIRYHEGDISAADAARYTGAIAIDTETLGLIPRRDRLCVVQLSPGDGTADIIRIASGQS 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV ML D R+KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKD Sbjct: 63 QAPNLVAMLADTTRQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKELL ++ISKAQQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR + A Sbjct: 123 NLKELLEVDISKAQQSSDWAAEKLSPAQLEYAASDVLYLHALRDKLTARLVRDGRMEHAE 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFAFLPTRAKLDLLGWEEADIFAHS 208 >gi|13472866|ref|NP_104433.1| hypothetical protein mll3296 [Mesorhizobium loti MAFF303099] gi|14023613|dbj|BAB50219.1| mll3296 [Mesorhizobium loti MAFF303099] Length = 206 Score = 301 bits (771), Expect = 5e-80, Method: Composition-based stats. Identities = 125/207 (60%), Positives = 157/207 (75%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IR H+ D+P + V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ Sbjct: 1 MADIRFHKHDLPD-LSHYNVGAVAIDTETLGLNPHRDRLCLVQISPGDGSADVIQIAPGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K APNLV +L + K+FH+GRFD+AVL+ FGV PVFCTKIASRLTRTYT++HGLK Sbjct: 60 KKAPNLVSLLRNRSVTKLFHFGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR +L R GR+ A Sbjct: 120 DICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLAREGRTKEA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDL+GW+ DIF+HS Sbjct: 180 DACFRFLPTRAKLDLMGWDEEDIFAHS 206 >gi|150398650|ref|YP_001329117.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419] gi|150030165|gb|ABR62282.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419] Length = 208 Score = 300 bits (769), Expect = 8e-80, Method: Composition-based stats. Identities = 149/206 (72%), Positives = 170/206 (82%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI AARY AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRIAAGQK Sbjct: 3 NTIRFHEGDISEADAARYRGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRIAAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV ML D R+KIFH+GRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKD Sbjct: 63 QAPNLVAMLSDPARQKIFHFGRFDIAVLFHTFGVTASPVFCTKIASRLARTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKELL ++ISK QQSSDW+AD LS QL+YAASDV+HLHALR + T +L R GR +LA Sbjct: 123 NLKELLDVDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLLRDGRMELAE 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFSFLPTRAKLDLLGWEETDIFAHS 208 >gi|254466427|ref|ZP_05079838.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I] gi|206687335|gb|EDZ47817.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I] Length = 204 Score = 299 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 107/203 (52%), Positives = 145/203 (71%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC++Q+S GDG I+++ GQ AP Sbjct: 4 HLYKNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVIQMSGGDGNAHIVQVEKGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML D K+FH+GRFDIA +++ FG PV+CTKIASRL RTYT++HGLK+ + Sbjct: 62 NLCRMLEDPNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELLGI+ISK QQ SDW A++L++ QL YAASDV+HLH LR ++L R GRS++A +C Sbjct: 122 ELLGIDISKQQQMSDWGAEELTEAQLDYAASDVLHLHKLREALDKRLAREGRSEMAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW +DIF+HS Sbjct: 182 DFLPMRAKLDLAGWPEIDIFAHS 204 >gi|146337290|ref|YP_001202338.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. ORS278] gi|146190096|emb|CAL74088.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. ORS278] Length = 204 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 121/205 (59%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+R+H GD+P +RY ++A+DTET+GL P RDRLC+VQLSPGDG+ D+++I G + Sbjct: 2 TVRLHRGDLPD--LSRYTSSVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L + KIFH+ RFD+A LF+TFGV +PV+CTKIASRL RTYT++HGLKD Sbjct: 60 APNLKTLLGNTAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL I++SK QQSSDW AD LS+ QL YAASDV+HLHALR + L R GR LA + Sbjct: 120 VRELLNIDLSKQQQSSDWGADSLSEPQLAYAASDVLHLHALREKLDVMLAREGRLALAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL G+E DIF+HS Sbjct: 180 CFAFLPHRATLDLGGFEADDIFAHS 204 >gi|195970213|ref|NP_384368.2| hypothetical protein SMc00342 [Sinorhizobium meliloti 1021] gi|307306427|ref|ZP_07586171.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C] gi|307319314|ref|ZP_07598743.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83] gi|187904130|emb|CAC41699.2| Probable ribonuclease D [Sinorhizobium meliloti 1021] gi|306895150|gb|EFN25907.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83] gi|306902269|gb|EFN32866.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C] Length = 208 Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 149/206 (72%), Positives = 170/206 (82%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI AARY AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRI+AGQK Sbjct: 3 NTIRFHEGDISETDAARYTGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRISAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV ML D R+KIFH+GRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKD Sbjct: 63 QAPNLVSMLADPTRQKIFHFGRFDIAVLFHTFGVTASPVFCTKIASRLARTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKELL I+ISK QQSSDW+AD LS QL+YAASDV+HLHALR + T +L R GR +LA Sbjct: 123 NLKELLDIDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLLRDGRMELAE 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFSFLPTRAKLDLLGWEEADIFAHS 208 >gi|218661189|ref|ZP_03517119.1| ribonuclease III protein [Rhizobium etli IE4771] Length = 208 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 148/206 (71%), Positives = 170/206 (82%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI A AARY A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 3 ATIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKD Sbjct: 63 EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L I+ISK QQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR D AT Sbjct: 123 NLKEMLDIDISKTQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHAT 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFEFLPTRAKLDLLGWEEADIFAHS 208 >gi|86355756|ref|YP_467648.1| RNAse D protein [Rhizobium etli CFN 42] gi|86279858|gb|ABC88921.1| RNAse D protein [Rhizobium etli CFN 42] Length = 208 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 149/206 (72%), Positives = 171/206 (83%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI A AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK Sbjct: 3 ATIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKD Sbjct: 63 AAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTNPVFCTKIASRLCRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L +++SKAQQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR D AT Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHAT 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFAFLPTRAKLDLLGWEEADIFAHS 208 >gi|85714031|ref|ZP_01045020.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A] gi|85699157|gb|EAQ37025.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A] Length = 206 Score = 298 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 123/205 (60%), Positives = 152/205 (74%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H GD+P + ARY + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ + Sbjct: 2 TIRLHRGDLPDQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQHD 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFH+ RFD+A L FGV RPV+CTKIASRLTRTYT++HGLKD Sbjct: 62 APNLKKLLGDPAIVKIFHFARFDLAALHNAFGVMPRPVYCTKIASRLTRTYTDRHGLKDL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E L I++SK QQSSDW + LSD QL YAASDV+HLHALR + L R R+ LA + Sbjct: 122 VREALSIDLSKQQQSSDWGSLALSDAQLAYAASDVLHLHALRDKLDAMLAREDRTGLAQA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW+ DIF+HS Sbjct: 182 CFEFLPARAMLDLSGWDAEDIFAHS 206 >gi|319781433|ref|YP_004140909.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167321|gb|ADV10859.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 206 Score = 298 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 126/207 (60%), Positives = 157/207 (75%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IR H+ D+P + V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ Sbjct: 1 MADIRFHKNDLPD-LSHYNVGAVAIDTETLGLNPHRDRLCVVQISPGDGSADVIQIAPGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K APNLV +L + K+FHYGRFD+AVL+ FGV PVFCTKIASRLTRTYT++HGLK Sbjct: 60 KKAPNLVSLLRNRGVTKLFHYGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR +L R GR+ A Sbjct: 120 DICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLARDGRTKEA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDL+GW+ DIF+HS Sbjct: 180 DACFRFLPTRAKLDLMGWDEEDIFAHS 206 >gi|218508865|ref|ZP_03506743.1| ribonuclease III protein [Rhizobium etli Brasil 5] gi|327190020|gb|EGE57137.1| ribonuclease III protein [Rhizobium etli CNPAF512] Length = 208 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 147/206 (71%), Positives = 171/206 (83%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI A AARY A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 3 ATIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL+RTYT++HGLKD Sbjct: 63 EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L ++ISK QQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR D AT Sbjct: 123 NLKEMLDVDISKTQQSSDWAAETLSQAQLEYAASDVLYLHALRDKLTARLIRDGRFDHAT 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFAFLPTRAKLDLLGWEEADIFAHS 208 >gi|209551599|ref|YP_002283516.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537355|gb|ACI57290.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 208 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 149/206 (72%), Positives = 172/206 (83%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI A AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIA+GQK Sbjct: 3 ATIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIASGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKD Sbjct: 63 EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTNPVFCTKIASRLIRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L ++ISKAQQSSDW+A+ LS QL+YAASDV++LHALR + TE+L R GR D AT Sbjct: 123 NLKEMLDVDISKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTERLLRDGRFDHAT 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFAFLPTRAKLDLLGWEEADIFAHS 208 >gi|218670593|ref|ZP_03520264.1| ribonuclease III protein [Rhizobium etli GR56] Length = 208 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 147/206 (71%), Positives = 169/206 (82%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI AARY A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 3 ATIRYHEGDISTADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKD Sbjct: 63 EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L I+ISK QQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR D AT Sbjct: 123 NLKEMLDIDISKTQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHAT 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFEFLPTRAKLDLLGWEEADIFAHS 208 >gi|110677766|ref|YP_680773.1| 3'- 5' exonuclease family protein, putative [Roseobacter denitrificans OCh 114] gi|109453882|gb|ABG30087.1| 3'- 5' exonuclease family protein, putative [Roseobacter denitrificans OCh 114] Length = 248 Score = 297 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 111/205 (54%), Positives = 144/205 (70%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T V++ D+P +A+D ET+GL P RDRLC+VQLS GDG +I+IA GQ Sbjct: 46 THNVYKNDLPDGLDLG--PMVAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTE 103 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D K K+FH+GRFDIA + FG PV+CTKIASRL RTYT++HGL Sbjct: 104 APNLCKLLEDPKVLKLFHFGRFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKL 163 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L+ELL I+ISK QQSSDW A+ L+D Q++YAASDV++LH LR + L+R GR + A + Sbjct: 164 LQELLAIDISKQQQSSDWGAETLTDAQIEYAASDVLYLHQLREALNKMLEREGRMETAQA 223 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDL+GW + DIF+HS Sbjct: 224 CFDFLPMRAKLDLMGWPDTDIFAHS 248 >gi|15890866|ref|NP_356538.1| ribonuclease D [Agrobacterium tumefaciens str. C58] gi|15159163|gb|AAK89323.1| ribonuclease D [Agrobacterium tumefaciens str. C58] Length = 208 Score = 297 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 148/206 (71%), Positives = 171/206 (83%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI AE AARY AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRIAAGQK Sbjct: 3 ATIRYHEGDISAEDAARYKGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRIAAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV ML D R+KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKD Sbjct: 63 QAPNLVHMLADPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L ++ISKAQQSSDW+A+ LS QL+YAASDV++LHALR + T +L R GR + A Sbjct: 123 NLKEMLEVDISKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRIEHAD 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW+ DIF+HS Sbjct: 183 ACFAFLPTRAKLDLLGWDETDIFAHS 208 >gi|86136835|ref|ZP_01055413.1| exonuclease, putative [Roseobacter sp. MED193] gi|85826159|gb|EAQ46356.1| exonuclease, putative [Roseobacter sp. MED193] Length = 204 Score = 297 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 105/203 (51%), Positives = 145/203 (71%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P + +A+D ET+GL P RDRLC++QLS GDG I+++A GQ AP Sbjct: 4 HLYQNDLPDDLKLG--PVVAIDCETMGLNPHRDRLCVIQLSDGDGNAHIVQVAKGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML D + K+FH+GRFDIA +++ FG PV+CTKIASRL RTYT++HGLK+ + Sbjct: 62 NLCAMLEDPETLKLFHFGRFDIAAMYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLTQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 EL+G++ISK QQ SDW A L++ QL YAASDV++LH LR ++L+R GR ++A +C Sbjct: 122 ELIGVDISKQQQMSDWGAKVLTEAQLDYAASDVLYLHRLREALNKRLEREGRMEMAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW DIF+HS Sbjct: 182 DFLPMRAKLDLAGWPETDIFAHS 204 >gi|84500657|ref|ZP_00998906.1| exonuclease, putative [Oceanicola batsensis HTCC2597] gi|84391610|gb|EAQ03942.1| exonuclease, putative [Oceanicola batsensis HTCC2597] Length = 204 Score = 297 bits (761), Expect = 7e-79, Method: Composition-based stats. Identities = 110/205 (53%), Positives = 148/205 (72%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T +++ D+P +A+D ET+GL P RDRLC+VQ+S GDG I+++A GQ + Sbjct: 2 TNHLYKQDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQMSGGDGDAHIVQVAIGQDS 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K K+FH+GRFDIA ++ FG PV+CTKIASRL RTYT++HGLK+ Sbjct: 60 APNLCAMLTDPKVLKLFHFGRFDIAAMYNAFGALAAPVYCTKIASRLVRTYTDRHGLKNL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLGI++SK QQSSDW A++LS QL+YAASDV++LH LR + +L R GR+++A + Sbjct: 120 TQELLGIDLSKQQQSSDWGAEELSAAQLEYAASDVLYLHRLREELDARLAREGRTEIAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA LDL+GW DIF+HS Sbjct: 180 CFDFLPVRARLDLMGWPETDIFAHS 204 >gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1] Length = 206 Score = 296 bits (760), Expect = 8e-79, Method: Composition-based stats. Identities = 127/207 (61%), Positives = 159/207 (76%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT IRVH+GD+P +VDAIAVDTETLGL P RDRLC+VQLS GDGT DII+IA GQ Sbjct: 1 MTEIRVHQGDLP-NLDNYHVDAIAVDTETLGLQPYRDRLCVVQLSSGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNLV +L D+ KIFH+GRFD+A+L +TFG+ VFCTKIAS+LTRTYT++HGLK Sbjct: 60 NSAPNLVKLLEDKAITKIFHFGRFDLAILAHTFGIMPDVVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+ + LS Q++YAASDV++LH L+ F +L+R R ++A Sbjct: 120 EICSELLNVNISKQQQSSDWATETLSRAQIEYAASDVLYLHRLKSVFETRLKREERENVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW DIF+HS Sbjct: 180 KACFQFLPMRAKLDLLGWTETDIFAHS 206 >gi|260431736|ref|ZP_05785707.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157] gi|260415564|gb|EEX08823.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157] Length = 204 Score = 296 bits (760), Expect = 9e-79, Method: Composition-based stats. Identities = 105/203 (51%), Positives = 143/203 (70%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC++Q+S GDG I+++ GQ AP Sbjct: 4 HLYKNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVIQMSGGDGHSHIVQVEKGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML + + K+FH+GRFDIA L++ FG PV+CTKIASRL RTYT++HGLK+ + Sbjct: 62 NLCAMLENPEVLKLFHFGRFDIAALYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLCQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELLGI+ISK QQ SDW A+ L++ QL YAASDV++LH LR +L+R GR+++A +C Sbjct: 122 ELLGIDISKQQQMSDWGAETLTEAQLDYAASDVLYLHQLRAALDARLEREGRTEMAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA LDL GW DIF+HS Sbjct: 182 DFLPMRARLDLAGWPETDIFAHS 204 >gi|254510165|ref|ZP_05122232.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11] gi|221533876|gb|EEE36864.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11] Length = 204 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 105/203 (51%), Positives = 143/203 (70%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC++Q+S GDG I+++ GQ +AP Sbjct: 4 HLYKNDLPDGLDMG--PIVAIDCETMGLNPHRDRLCVIQMSGGDGDCHIVQVEKGQASAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML D K+FH+GRFDIA +++ FG PV+CTKIASRL RTYT++HGLK+ + Sbjct: 62 NLCAMLEDPNILKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLCQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELLG++ISK QQ SDW A+ L+D QL YAASDV++LH LR +L R GR+++A +C Sbjct: 122 ELLGVDISKQQQMSDWGAETLTDAQLDYAASDVLYLHRLREALDGRLAREGRTEVAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW DIF+HS Sbjct: 182 DFLPTRAKLDLAGWPETDIFAHS 204 >gi|254505241|ref|ZP_05117392.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11] gi|222441312|gb|EEE47991.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11] Length = 223 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 120/205 (58%), Positives = 154/205 (75%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+GD+P A A+AVD+ETLGL P RDRLC+VQLSPGDG+ D+++IA GQ Sbjct: 19 TIRYHKGDLPDLSAYETASAVAVDSETLGLNPHRDRLCVVQLSPGDGSADVVQIARGQTE 78 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL + D + KIFH+ RFD+AVL + G+ V PV+CTKIAS+L RTYT++HGLKD Sbjct: 79 APNLAALFTDAAKPKIFHFARFDVAVLRHYLGIHVTPVWCTKIASKLVRTYTDRHGLKDI 138 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG+ +SK QQSSDW+A+ LSD QL YAASDV+HLH L+ + L+R R+++A + Sbjct: 139 TRELLGVELSKQQQSSDWAAETLSDAQLAYAASDVLHLHDLKAKLEMMLEREERTNIAEA 198 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RAELDL GWE DIF+HS Sbjct: 199 CFSFLPVRAELDLKGWEENDIFAHS 223 >gi|296446798|ref|ZP_06888736.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b] gi|296255673|gb|EFH02762.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b] Length = 204 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 122/204 (59%), Positives = 149/204 (73%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H+GD+P +A+DTETLGL P RDRLC+VQLS G+G D++RIA GQ Sbjct: 2 TIRLHQGDLPDGADLG--PVVAIDTETLGLNPHRDRLCLVQLSGGNGDADLVRIAPGQTR 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L + K+FH+GRFDIAV+ TFGV PV+CTKIAS+L RTYT++HGLKD Sbjct: 60 APNLEALLANPNVLKLFHFGRFDIAVMAKTFGVMAEPVYCTKIASKLIRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLG+ ISK QQSSDW AD LSD QL YAASDV++LHALR + L R R+DLA + Sbjct: 120 VRELLGVEISKQQQSSDWGADTLSDAQLSYAASDVLYLHALREKLDVMLAREHRTDLAAA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL RA LDL GW +DIFSH Sbjct: 180 CFAFLPMRARLDLAGWPEIDIFSH 203 >gi|126738420|ref|ZP_01754125.1| exonuclease, putative [Roseobacter sp. SK209-2-6] gi|126720219|gb|EBA16925.1| exonuclease, putative [Roseobacter sp. SK209-2-6] Length = 204 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 108/203 (53%), Positives = 146/203 (71%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P + +A+D ET+GL P RDRLC++Q+S GDG II++A GQ AP Sbjct: 4 HLYQNDLPDDLKLG--PVVAIDCETMGLNPHRDRLCVIQMSDGDGNAHIIQVAKGQSEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL +L D + K+FH+GRFDIA ++ FG PV+CTKIASRL RTYT++HGLK+ + Sbjct: 62 NLCRLLEDPETLKLFHFGRFDIAAMYNAFGALSAPVYCTKIASRLVRTYTDRHGLKNLTQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELLGI+ISK QQ SDW A+ L+D QL YAASDV+HLH LR ++L+R GR+++A +C Sbjct: 122 ELLGIDISKQQQMSDWGAEILTDAQLDYAASDVLHLHKLRKALNKRLEREGRTEMAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW DIF+HS Sbjct: 182 DFLPMRAKLDLAGWPETDIFAHS 204 >gi|56695010|ref|YP_165357.1| exonuclease, putative [Ruegeria pomeroyi DSS-3] gi|56676747|gb|AAV93413.1| exonuclease, putative [Ruegeria pomeroyi DSS-3] Length = 204 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 108/203 (53%), Positives = 143/203 (70%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC++Q+S GDG I+++ GQ AP Sbjct: 4 HLYKNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVIQMSGGDGNTHIVQVEKGQTAAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML + + K+FH+GRFDIA L++ FG PV+CTKIASRL RTYT++HGLK+ + Sbjct: 62 NLCAMLENPEVLKLFHFGRFDIAALYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLCQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELLG++ISK QQ SDW A+ LS+ QL YAASDV++LH LR +L R GR+DLA SC Sbjct: 122 ELLGVDISKQQQMSDWGAETLSEAQLDYAASDVLYLHRLREALDGRLAREGRADLAQSCF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA LDL+GW DIF+HS Sbjct: 182 DFLPTRARLDLVGWPETDIFAHS 204 >gi|17988111|ref|NP_540745.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M] gi|62289101|ref|YP_220894.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941] gi|82699039|ref|YP_413613.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308] gi|148559185|ref|YP_001258158.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840] gi|189023376|ref|YP_001934144.1| 3'-5' exonuclease [Brucella abortus S19] gi|225626663|ref|ZP_03784702.1| ribonuclease D [Brucella ceti str. Cudo] gi|225851660|ref|YP_002731893.1| hypothetical protein BMEA_A0127 [Brucella melitensis ATCC 23457] gi|237814593|ref|ZP_04593591.1| ribonuclease D [Brucella abortus str. 2308 A] gi|254690430|ref|ZP_05153684.1| hypothetical protein Babob68_09714 [Brucella abortus bv. 6 str. 870] gi|254694918|ref|ZP_05156746.1| hypothetical protein Babob3T_09702 [Brucella abortus bv. 3 str. Tulya] gi|254696124|ref|ZP_05157952.1| hypothetical protein Babob28_00020 [Brucella abortus bv. 2 str. 86/8/59] gi|254700933|ref|ZP_05162761.1| hypothetical protein Bsuib55_08749 [Brucella suis bv. 5 str. 513] gi|254707182|ref|ZP_05169010.1| hypothetical protein BpinM_09468 [Brucella pinnipedialis M163/99/10] gi|254709273|ref|ZP_05171084.1| hypothetical protein BpinB_03206 [Brucella pinnipedialis B2/94] gi|254713304|ref|ZP_05175115.1| hypothetical protein BcetM6_08117 [Brucella ceti M644/93/1] gi|254716342|ref|ZP_05178153.1| hypothetical protein BcetM_07890 [Brucella ceti M13/05/1] gi|254731461|ref|ZP_05190039.1| hypothetical protein Babob42_09744 [Brucella abortus bv. 4 str. 292] gi|256030796|ref|ZP_05444410.1| hypothetical protein BpinM2_09123 [Brucella pinnipedialis M292/94/1] gi|256045912|ref|ZP_05448786.1| hypothetical protein Bmelb1R_15494 [Brucella melitensis bv. 1 str. Rev.1] gi|256060264|ref|ZP_05450439.1| hypothetical protein Bneo5_07870 [Brucella neotomae 5K33] gi|256112626|ref|ZP_05453547.1| hypothetical protein Bmelb3E_08085 [Brucella melitensis bv. 3 str. Ether] gi|256158817|ref|ZP_05456678.1| hypothetical protein BcetM4_08038 [Brucella ceti M490/95/1] gi|256254202|ref|ZP_05459738.1| hypothetical protein BcetB_07895 [Brucella ceti B1/94] gi|256258682|ref|ZP_05464218.1| hypothetical protein Babob9C_15316 [Brucella abortus bv. 9 str. C68] gi|256264829|ref|ZP_05467361.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|256368584|ref|YP_003106090.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915] gi|260169700|ref|ZP_05756511.1| 3'-5' exonuclease family protein [Brucella sp. F5/99] gi|260546398|ref|ZP_05822138.1| 3'-5' exonuclease [Brucella abortus NCTC 8038] gi|260563197|ref|ZP_05833683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260755977|ref|ZP_05868325.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870] gi|260759201|ref|ZP_05871549.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292] gi|260760489|ref|ZP_05872835.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59] gi|260884998|ref|ZP_05896612.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68] gi|261215252|ref|ZP_05929533.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya] gi|261218123|ref|ZP_05932404.1| 3'-5' exonuclease [Brucella ceti M13/05/1] gi|261221350|ref|ZP_05935631.1| 3'-5' exonuclease [Brucella ceti B1/94] gi|261314663|ref|ZP_05953860.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10] gi|261316779|ref|ZP_05955976.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94] gi|261321030|ref|ZP_05960227.1| 3'-5' exonuclease [Brucella ceti M644/93/1] gi|261324237|ref|ZP_05963434.1| 3'-5' exonuclease [Brucella neotomae 5K33] gi|261751448|ref|ZP_05995157.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513] gi|261759236|ref|ZP_06002945.1| 3'-5' exonuclease [Brucella sp. F5/99] gi|265987850|ref|ZP_06100407.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1] gi|265992324|ref|ZP_06104881.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1] gi|265994066|ref|ZP_06106623.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether] gi|265997310|ref|ZP_06109867.1| 3'-5' exonuclease [Brucella ceti M490/95/1] gi|294851524|ref|ZP_06792197.1| ribonuclease D [Brucella sp. NVSL 07-0026] gi|297247517|ref|ZP_06931235.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196] gi|306842591|ref|ZP_07475240.1| 3'-5' exonuclease [Brucella sp. BO2] gi|17983864|gb|AAL53009.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M] gi|62195233|gb|AAX73533.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941] gi|82615140|emb|CAJ10073.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308] gi|148370442|gb|ABQ60421.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840] gi|189018948|gb|ACD71670.1| 3'-5' exonuclease [Brucella abortus S19] gi|225618320|gb|EEH15363.1| ribonuclease D [Brucella ceti str. Cudo] gi|225640025|gb|ACN99938.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|237789430|gb|EEP63640.1| ribonuclease D [Brucella abortus str. 2308 A] gi|255998742|gb|ACU47141.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915] gi|260096505|gb|EEW80381.1| 3'-5' exonuclease [Brucella abortus NCTC 8038] gi|260153213|gb|EEW88305.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260669519|gb|EEX56459.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292] gi|260670924|gb|EEX57745.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59] gi|260676085|gb|EEX62906.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870] gi|260874526|gb|EEX81595.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68] gi|260916859|gb|EEX83720.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya] gi|260919934|gb|EEX86587.1| 3'-5' exonuclease [Brucella ceti B1/94] gi|260923212|gb|EEX89780.1| 3'-5' exonuclease [Brucella ceti M13/05/1] gi|261293720|gb|EEX97216.1| 3'-5' exonuclease [Brucella ceti M644/93/1] gi|261296002|gb|EEX99498.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94] gi|261300217|gb|EEY03714.1| 3'-5' exonuclease [Brucella neotomae 5K33] gi|261303689|gb|EEY07186.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10] gi|261739220|gb|EEY27216.1| 3'-5' exonuclease [Brucella sp. F5/99] gi|261741201|gb|EEY29127.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513] gi|262551778|gb|EEZ07768.1| 3'-5' exonuclease [Brucella ceti M490/95/1] gi|262765047|gb|EEZ10968.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether] gi|263003390|gb|EEZ15683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1] gi|263095285|gb|EEZ18912.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|264660047|gb|EEZ30308.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1] gi|294820113|gb|EFG37112.1| ribonuclease D [Brucella sp. NVSL 07-0026] gi|297174686|gb|EFH34033.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196] gi|306287236|gb|EFM58724.1| 3'-5' exonuclease [Brucella sp. BO2] gi|326408140|gb|ADZ65205.1| 3'-5' exonuclease [Brucella melitensis M28] gi|326537851|gb|ADZ86066.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 205 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL + FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205 >gi|260460457|ref|ZP_05808708.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075] gi|259033562|gb|EEW34822.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075] Length = 206 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 126/207 (60%), Positives = 156/207 (75%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IR H+ D+P V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ Sbjct: 1 MADIRFHKHDLPD-LTHYNVGAVAIDTETLGLNPHRDRLCVVQISPGDGSADVIQIAPGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K APNLV +L + K+FHYGRFD+AVL+ FGV PVFCTKIASRLTRTYT++HGLK Sbjct: 60 KKAPNLVSLLRNRGITKLFHYGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR + +L R GR+ A Sbjct: 120 DICFELLGVGLSKAQQSSDWAAEILSPEQLEYAASDVLYLHRLRDVLSGRLARDGRTKEA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDL+GW DIF+HS Sbjct: 180 DACFRFLPTRAKLDLMGWGEEDIFAHS 206 >gi|306844394|ref|ZP_07476984.1| 3'-5' exonuclease [Brucella sp. BO1] gi|306275207|gb|EFM56957.1| 3'-5' exonuclease [Brucella sp. BO1] Length = 205 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIDAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL + FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205 >gi|254476761|ref|ZP_05090147.1| 3'-5' exonuclease [Ruegeria sp. R11] gi|214031004|gb|EEB71839.1| 3'-5' exonuclease [Ruegeria sp. R11] Length = 204 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 107/203 (52%), Positives = 143/203 (70%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC++Q+S GDG I+++A GQ AP Sbjct: 4 HLYQNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVIQMSGGDGNAHIVQVAKGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML D K+FH+GRFDIA +++ FG PV+CTKIASRL RTYT++HGLK+ + Sbjct: 62 NLCRMLEDPNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 EL+G++ISK QQ SDW A LSD QL YAASDV+HLH LR ++L R GR+++A +C Sbjct: 122 ELIGVDISKQQQMSDWGAAQLSDAQLDYAASDVLHLHRLRAALDKRLDREGRTEMAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW DIF+HS Sbjct: 182 DFLPMRAKLDLAGWPETDIFAHS 204 >gi|239830972|ref|ZP_04679301.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301] gi|239823239|gb|EEQ94807.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301] Length = 205 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 124/205 (60%), Positives = 157/205 (76%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+ D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHKNDLP-NLDHYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL +TFG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAHTFGTMPQPVFCTKIASKLTRTYTDRHGLKEL 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CNELLDVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRLERDGRAKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWPEDDIFAHS 205 >gi|153007480|ref|YP_001368695.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188] gi|151559368|gb|ABS12866.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188] Length = 205 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+ D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHKNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAQAFGTMPQPVFCTKIASKLTRTYTDRHGLKEL 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CNELLDVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRLERDGRAKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWPEDDIFAHS 205 >gi|163733026|ref|ZP_02140470.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis Och 149] gi|161393561|gb|EDQ17886.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis Och 149] Length = 204 Score = 294 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 111/205 (54%), Positives = 141/205 (68%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T +V++ D+P +A+D ET+GL P RDRLC+VQLS GDG +I+IA GQ Sbjct: 2 THKVYKNDLPDGLDLG--PMVAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D K+FH+GRFDIA + FG PV+CTKIASRL RTYT++HGL Sbjct: 60 APNLCKLLEDPNVLKLFHFGRFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L+ELL I+ISK QQSSDW AD L+D Q+ YAASDV++LH LR L R GR + A + Sbjct: 120 LQELLNIDISKQQQSSDWGADTLTDAQIDYAASDVLYLHQLREALNTMLTREGRMETAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDL+GW + DIF+HS Sbjct: 180 CFDFLPMRAKLDLMGWPDTDIFAHS 204 >gi|163842395|ref|YP_001626799.1| hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445] gi|163673118|gb|ABY37229.1| Hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445] Length = 205 Score = 294 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 122/205 (59%), Positives = 154/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H D+P V A+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHRNDLP-NLDNYQVAAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL + FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205 >gi|255262197|ref|ZP_05341539.1| 3'-5' exonuclease [Thalassiobium sp. R2A62] gi|255104532|gb|EET47206.1| 3'-5' exonuclease [Thalassiobium sp. R2A62] Length = 203 Score = 294 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 101/202 (50%), Positives = 141/202 (69%), Gaps = 2/202 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC++Q+S GD II+++ GQ AP Sbjct: 4 HLYQNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVIQMSGGDSNAHIIQVSKGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML + K+FH+GRFDIA + FG PV+CTKIAS++ RTYT++HGLK+ L+ Sbjct: 62 NLTAMLTNPDVLKLFHFGRFDIAAMQNAFGAVTAPVYCTKIASKMVRTYTDRHGLKNLLQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 EL+G++ISK QQSSDW + L++ QL YAASDV++LH LR + +L R GR ++A +C Sbjct: 122 ELIGVDISKQQQSSDWGSQTLTNAQLDYAASDVLYLHKLRTELNARLVREGRMEMAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSH 206 +FL RA+LDL GW +DIFSH Sbjct: 182 DFLPMRAQLDLEGWPEIDIFSH 203 >gi|241207041|ref|YP_002978137.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860931|gb|ACS58598.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 208 Score = 294 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 149/206 (72%), Positives = 171/206 (83%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI A AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK Sbjct: 3 ATIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 A NLV +L D +KIFHYGRFDIAVLF+TFGV PVFCTKIASRL RTYT++HGLKD Sbjct: 63 EARNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTATPVFCTKIASRLIRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L +++SKAQQSSDW+A+ LS QL+YAASDV++LHALR + TE+L R GR D AT Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIRDGRYDHAT 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFEFLPTRAKLDLLGWEEADIFAHS 208 >gi|118589455|ref|ZP_01546861.1| 3'-5' exonuclease [Stappia aggregata IAM 12614] gi|118438155|gb|EAV44790.1| 3'-5' exonuclease [Stappia aggregata IAM 12614] Length = 206 Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 121/205 (59%), Positives = 156/205 (76%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+GD+P A +A+AVD+ETLGL P RDRLC+VQLSPGDG+ D+++IA GQ Sbjct: 2 TIRYHKGDLPDLKAYETANAVAVDSETLGLNPHRDRLCVVQLSPGDGSADVVQIARGQSE 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ++ D + KIFH+ RFD+AVL + +RV PV+CTKIAS+L RTYT++HGLKD Sbjct: 62 APNLAALMTDTSKPKIFHFARFDVAVLQHYLNIRVSPVWCTKIASKLVRTYTDRHGLKDI 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG+ +SK QQSSDW+A+ LSD QL YAASDV+HLHAL+ + L+R R+ +A + Sbjct: 122 TRELLGVELSKQQQSSDWAAETLSDAQLAYAASDVLHLHALKERLEMMLEREERTHIAEA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RAELDL GWE DIF+HS Sbjct: 182 CFDFLPTRAELDLKGWEENDIFAHS 206 >gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831] gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831] Length = 207 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 114/206 (55%), Positives = 144/206 (69%), Gaps = 2/206 (0%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+R+H GD+PA A A+A+DTETLGL P RDRLC+VQLS GDGT D+++I Sbjct: 4 PTVRLHRGDLPASYDAGR--AVAIDTETLGLNPHRDRLCVVQLSTGDGTADVVQIPQAGP 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L +L D KIFH+ RFD+AVL+ GV PV+CTKIAS+L RTYT++HGLKD Sbjct: 62 EPVVLKRVLADPGILKIFHFARFDVAVLYRALGVMPSPVYCTKIASKLARTYTDRHGLKD 121 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++EL+G+++SK QQSSDW A+ LS QL YAASDV+HLHA R + L R GR+DLA Sbjct: 122 VVRELVGVDLSKQQQSSDWGAETLSQAQLDYAASDVLHLHAARERLDAMLAREGRTDLAA 181 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA LDL GW DIF+H+ Sbjct: 182 ACFGFLPTRARLDLDGWPETDIFAHT 207 >gi|254718341|ref|ZP_05180152.1| hypothetical protein Bru83_02133 [Brucella sp. 83/13] gi|265983300|ref|ZP_06096035.1| 3'-5' exonuclease [Brucella sp. 83/13] gi|306839563|ref|ZP_07472369.1| 3'-5' exonuclease [Brucella sp. NF 2653] gi|264661892|gb|EEZ32153.1| 3'-5' exonuclease [Brucella sp. 83/13] gi|306405349|gb|EFM61622.1| 3'-5' exonuclease [Brucella sp. NF 2653] Length = 205 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK Sbjct: 2 TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCMVQISPGDGTADVIQIEAGQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLANAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205 >gi|116249870|ref|YP_765708.1| ribonuclease [Rhizobium leguminosarum bv. viciae 3841] gi|115254518|emb|CAK05592.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 208 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 148/206 (71%), Positives = 170/206 (82%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI A ARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK Sbjct: 3 ATIRYHEGDISAADVARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV +L D +KIFHYGRFDIAVLF+TF V PVFCTKIASRL RTYT++HGLKD Sbjct: 63 EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFSVTTTPVFCTKIASRLIRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L +++SKAQQSSDW+A+ LS QL+YAASDV++LHALR + TE+L R GR D AT Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIRDGRYDHAT 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFEFLPTRAKLDLLGWEEADIFAHS 208 >gi|23009303|ref|ZP_00050402.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 293 bits (752), Expect = 7e-78, Method: Composition-based stats. Identities = 111/204 (54%), Positives = 145/204 (71%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 IR+H GD+P + + AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I G Sbjct: 8 IRLHRGDLPPDF--QPGSAIAIDTETLGLNPHRDRLCVVQISRGDGSADVVQIRPGDPEP 65 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L +L D KIFH+ RFD+AVLF GV PV+CTK+AS+L RTYT++HGLKD + Sbjct: 66 VRLKAILADPGVLKIFHFARFDLAVLFRALGVMPAPVYCTKVASKLARTYTDRHGLKDVV 125 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +EL+G+++SK QQSSDW A+ LS Q+ YAASDV+HLHA R + L R GRS++A +C Sbjct: 126 RELVGVDLSKQQQSSDWGAETLSQAQIDYAASDVLHLHAARERLDLMLAREGRSEMARAC 185 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 +FL RA LDL GW DIF+HS Sbjct: 186 FDFLPTRARLDLAGWPETDIFAHS 209 >gi|23501034|ref|NP_697161.1| 3'-5' exonuclease family protein [Brucella suis 1330] gi|161618108|ref|YP_001591995.1| hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365] gi|254705301|ref|ZP_05167129.1| hypothetical protein Bsuib36_15553 [Brucella suis bv. 3 str. 686] gi|260567236|ref|ZP_05837706.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40] gi|261756011|ref|ZP_05999720.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686] gi|23346898|gb|AAN29076.1| 3'-5' exonuclease family protein [Brucella suis 1330] gi|161334919|gb|ABX61224.1| Hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365] gi|260156754|gb|EEW91834.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40] gi|261745764|gb|EEY33690.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686] Length = 205 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 122/205 (59%), Positives = 154/205 (75%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H D+P VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I A QK Sbjct: 2 TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEADQKK 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+GRFD+AVL + FG +PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 61 APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL ++ISK QQSSDW+A+ LS QL+YAASDV++LH L+ ++L+R GR+ A + Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R+ELDL+GW DIF+HS Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205 >gi|240139043|ref|YP_002963518.1| 3'-5' exonuclease [Methylobacterium extorquens AM1] gi|240009015|gb|ACS40241.1| 3'-5' exonuclease [Methylobacterium extorquens AM1] Length = 209 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 111/204 (54%), Positives = 147/204 (72%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 IR+H GD+P + A AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I G Sbjct: 8 IRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDPAP 65 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L +L D KIFH+ RFD+AVLF FGV PV+CTKIAS+L RTYT++HGLKD + Sbjct: 66 ERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVV 125 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +EL+G+++SK QQSSDW A LS Q+ YAASDV+HLHA R + L R GR+++A +C Sbjct: 126 RELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQAC 185 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 +FL R++LDL GW +DIF+H+ Sbjct: 186 FDFLPTRSKLDLAGWPEIDIFAHA 209 >gi|188581677|ref|YP_001925122.1| 3'-5' exonuclease [Methylobacterium populi BJ001] gi|179345175|gb|ACB80587.1| 3'-5' exonuclease [Methylobacterium populi BJ001] Length = 209 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 111/204 (54%), Positives = 149/204 (73%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 IR+H GD+P + A AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I G Sbjct: 8 IRLHRGDLPLDFAPGA--AIAIDTETLGLNPHRDRLCVVQISRGDGSADVVQIRPGDPAP 65 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L +L D + KIFH+ RFD+AVLF FGV PV+CTK+AS+L RTYT++HGLKD + Sbjct: 66 ERLKAVLADPQIVKIFHFARFDLAVLFKAFGVMPMPVYCTKVASKLARTYTDRHGLKDVV 125 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +EL+G+++SK QQSSDW A+ LS Q+ YAASDV+HLHA R + L R GR+++A +C Sbjct: 126 RELVGVDLSKQQQSSDWGAEALSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQAC 185 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW +DIF+H+ Sbjct: 186 FDFLPTRAKLDLAGWPEMDIFAHT 209 >gi|254561638|ref|YP_003068733.1| 3'-5' exonuclease [Methylobacterium extorquens DM4] gi|254268916|emb|CAX24877.1| 3'-5' exonuclease [Methylobacterium extorquens DM4] Length = 209 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 111/204 (54%), Positives = 147/204 (72%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 IR+H GD+P + A AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I G Sbjct: 8 IRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDPAP 65 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L +L D KIFH+ RFD+AVLF FGV PV+CTKIAS+L RTYT++HGLKD + Sbjct: 66 ERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVV 125 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +EL+G+++SK QQSSDW A LS Q+ YAASDV+HLHA R + L R GR+++A +C Sbjct: 126 RELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQAC 185 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 +FL R++LDL GW +DIF+H+ Sbjct: 186 FDFLPTRSKLDLAGWPEIDIFAHA 209 >gi|126732863|ref|ZP_01748654.1| 3'-5' exonuclease [Sagittula stellata E-37] gi|126706639|gb|EBA05713.1| 3'-5' exonuclease [Sagittula stellata E-37] Length = 204 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 109/203 (53%), Positives = 145/203 (71%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 ++H+GD+P +A+D ET+GL P RDRLC+VQLS GDG ++++A GQ AP Sbjct: 4 QLHQGDLPDNLDLG--PVVAIDCETMGLHPHRDRLCVVQLSAGDGNAHLVQVARGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL +L D K+FHYGRFDIA ++ FG PV+CTKIASRL RTYT++HGLK+ + Sbjct: 62 NLSRLLTDPDVLKLFHYGRFDIAAMYNAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELLG++ISK QQSSDW A+ L+D Q YAASDV+HLH LR L+R GR+++A +C Sbjct: 122 ELLGVDISKQQQSSDWGAETLTDAQKDYAASDVLHLHRLRTALNAMLEREGRTEIAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW + DIF+H+ Sbjct: 182 DFLPARAKLDLAGWPDTDIFAHA 204 >gi|158425553|ref|YP_001526845.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571] gi|158332442|dbj|BAF89927.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571] Length = 206 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 125/207 (60%), Positives = 154/207 (74%), Gaps = 4/207 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 TIR+H GD+P + +A+DTETLGL P RDRLC+VQLS GDGT D+++I AG Sbjct: 2 TIRLHRGDLPDSF--QPAPVVAIDTETLGLKPHRDRLCVVQLSNGDGTADVVQIPAGATA 59 Query: 62 -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNLV ML D K+FH+GRFDIAVL +TFGV PVFCTKIASRLTRTYT++HGLK Sbjct: 60 ESAPNLVRMLADPNVVKLFHFGRFDIAVLLHTFGVTTAPVFCTKIASRLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D ++ELLG+++SK QQSSDW+A +L+D QL YAASDV+HLHA + + L R GR+ LA Sbjct: 120 DLVRELLGVDLSKQQQSSDWAASELTDAQLAYAASDVLHLHACKEKLEAMLARDGRTALA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL GW + DIF+HS Sbjct: 180 AECFKFLPARAALDLAGWPDEDIFAHS 206 >gi|332716830|ref|YP_004444296.1| Ribonuclease D [Agrobacterium sp. H13-3] gi|325063515|gb|ADY67205.1| Ribonuclease D [Agrobacterium sp. H13-3] Length = 208 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 150/206 (72%), Positives = 172/206 (83%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI A AARY+ AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 3 ATIRYHEGDISAADAARYLGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL ML D R+KIFHYGRFDIAVLF+TFGV PVFCTKIASRLTRTYT++HGLKD Sbjct: 63 EAPNLTHMLADPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLTRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKE+L ++ISKAQQSSDW+A+ LS QL+YAASDV+HLHALR + T +L R GR D A Sbjct: 123 NLKEMLEVDISKAQQSSDWAAEKLSPAQLEYAASDVLHLHALRDKLTHRLVRDGRLDHAD 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW+ DIF+HS Sbjct: 183 ACFAFLPTRAKLDLLGWDETDIFAHS 208 >gi|21328703|gb|AAM48709.1| 3'- 5' exonuclease family protein [uncultured marine proteobacterium] Length = 204 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 115/205 (56%), Positives = 148/205 (72%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T V++GD+P +A+D ET+GL P+RDRLC+VQLS GDG ++++A GQ Sbjct: 2 TNHVYKGDLPDGLELG--PIVAIDCETMGLNPKRDRLCVVQLSSGDGHAHLVQVAKGQTA 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K+FH+GRFDIA + FG PV+CTKIASR+TRTYT++HGLK+ Sbjct: 60 APNLCRMLEDPNVLKLFHFGRFDIAAMKEAFGALTAPVYCTKIASRMTRTYTDRHGLKNL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L+ELL ++ISK QQSSDW A DL+ Q++YAASDV++LHALR + E L R GR +LA S Sbjct: 120 LQELLCVDISKQQQSSDWGAADLTKAQVEYAASDVLYLHALRERLNEMLIREGRMELAQS 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RAELDL GW + DIF+HS Sbjct: 180 CFDFLPTRAELDLAGWPDSDIFAHS 204 >gi|90420956|ref|ZP_01228860.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1] gi|90334734|gb|EAS48510.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1] Length = 205 Score = 291 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 119/205 (58%), Positives = 157/205 (76%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIRVH+GD+P +RY +A+DTETLGL RRDRLC+VQLSPGDGT D+++IA GQ Sbjct: 2 TIRVHKGDLPD--ISRYTGPVAIDTETLGLDTRRDRLCVVQLSPGDGTADVVQIAKGQSE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APN+ +L D + KIFHY RFD+A L++ FGV +FCTKIASRLTRTYT++HGLKD Sbjct: 60 APNITALLKDPAKTKIFHYARFDVAALYHAFGVMTDGIFCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +E++G++ISK QQSSDW+A+ LS Q++YAASDV++LH + ++L+R R +LA + Sbjct: 120 AREMVGVDISKQQQSSDWAAETLSQAQVEYAASDVLYLHDIMGGLYKRLEREDRMELAKA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDL GW++ DIFSHS Sbjct: 180 CFTFLPTRAKLDLAGWDDEDIFSHS 204 >gi|163851920|ref|YP_001639963.1| 3'-5' exonuclease [Methylobacterium extorquens PA1] gi|163663525|gb|ABY30892.1| 3'-5' exonuclease [Methylobacterium extorquens PA1] Length = 209 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 111/204 (54%), Positives = 148/204 (72%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 IR+H GD+P + A AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I G Sbjct: 8 IRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDPAP 65 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L+ +L D KIFH+ RFD+AVLF FGV PV+CTKIAS+L RTYT++HGLKD + Sbjct: 66 ERLMAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVV 125 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +EL+G+++SK QQSSDW A LS Q+ YAASDV+HLHA R + L R GR+++A +C Sbjct: 126 RELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQAC 185 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 +FL R++LDL GW +DIF+H+ Sbjct: 186 FDFLPTRSKLDLAGWPEIDIFAHA 209 >gi|89052719|ref|YP_508170.1| 3'-5' exonuclease [Jannaschia sp. CCS1] gi|88862268|gb|ABD53145.1| 3'-5' exonuclease [Jannaschia sp. CCS1] Length = 203 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 106/204 (51%), Positives = 147/204 (72%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T +++ D+P + +A+D ET+GL P RDRLC++QLS GDG ++++A GQ Sbjct: 2 TNTLYQTDLPDDLELG--PIVAIDCETMGLHPHRDRLCVIQLSDGDGNAHLVQVAKGQTA 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D K+FH+GRFDIA +++ FG PV+CTKIAS+L RTYT++HGLK+ Sbjct: 60 APNLCALLEDPNTLKLFHFGRFDIAAMYHAFGALTAPVYCTKIASKLVRTYTDRHGLKNL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L+ELLGI+ISK QQSSDW AD L++ Q+ YAASDV++LH ++ + L R GR++LA + Sbjct: 120 LQELLGIDISKQQQSSDWGADSLTEAQVDYAASDVLYLHGVKDKLDVMLAREGRTELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA+LDL GW +DIFSH Sbjct: 180 CFDFLPMRAKLDLAGWPEMDIFSH 203 >gi|323136907|ref|ZP_08071987.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242] gi|322397668|gb|EFY00190.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242] Length = 204 Score = 290 bits (743), Expect = 8e-77, Method: Composition-based stats. Identities = 117/204 (57%), Positives = 147/204 (72%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H+GD+PA A +A+DTETLGL RRDRLC+VQLS GDG ++++IA GQ Sbjct: 2 TIRLHQGDLPAGVAV--APIVAIDTETLGLNHRRDRLCVVQLSIGDGDAELVQIAKGQTQ 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 A NLV +LVD K K+FH+ RFD+ +L TFGV PV+CTKIAS+LTRTYT++HGLKD Sbjct: 60 AENLVKLLVDPKVLKLFHFARFDMGILAKTFGVMPAPVYCTKIASKLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL G+ ISK QQSSDW A L+D Q YAASDV++LH L+ + L R GR++LA + Sbjct: 120 ARELAGVEISKQQQSSDWGAATLTDAQQAYAASDVLYLHQLKEKLDAMLAREGRTELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL R LDL GW DIFSH Sbjct: 180 CFDFLPTRTRLDLAGWPESDIFSH 203 >gi|83855386|ref|ZP_00948916.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1] gi|83941910|ref|ZP_00954372.1| exonuclease, putative [Sulfitobacter sp. EE-36] gi|83843229|gb|EAP82396.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1] gi|83847730|gb|EAP85605.1| exonuclease, putative [Sulfitobacter sp. EE-36] Length = 204 Score = 290 bits (743), Expect = 8e-77, Method: Composition-based stats. Identities = 110/205 (53%), Positives = 139/205 (67%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T V++ D+P +A+D ET+GL P RDRLC+VQLS GDG +++IA GQ Sbjct: 2 TNTVYQNDLPDGLNLG--PMVAIDCETMGLHPHRDRLCVVQLSGGDGNAHLVQIAKGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D K+FHYGRFDIA L TFG + PV+CTKIASRL RTYT++HGL Sbjct: 60 APNLCALLEDPHVLKLFHYGRFDIAALLNTFGAKAAPVYCTKIASRLVRTYTDRHGLAKL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL ++ISK QQSSDW A+ L+ Q+ YAASDV+HLH LR + L R GR +LA + Sbjct: 120 CQELLSVDISKQQQSSDWGAETLTKAQIDYAASDVLHLHKLRDVLNQMLIREGRIELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDL GW DIF+H+ Sbjct: 180 CFEFLPTRAQLDLDGWPETDIFAHA 204 >gi|114706944|ref|ZP_01439843.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506] gi|114537494|gb|EAU40619.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506] Length = 207 Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats. Identities = 119/205 (58%), Positives = 149/205 (72%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIRVH+GD+P RY +A+DTETLGL RDRLC+VQLSPGDGT D+++IA GQ Sbjct: 2 TIRVHKGDLPD--LDRYTGPVAIDTETLGLNTMRDRLCVVQLSPGDGTADVVQIAKGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APN+ +L D + KIFHY RFD+A L++ FG +FCTKIASRLTRTYT++HGLKD Sbjct: 60 APNISALLADASKTKIFHYARFDVAALYHAFGAMTEGIFCTKIASRLTRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G+++SK QQSSDW+ + LS QL YAASDV++LH + ++L+R R DLA Sbjct: 120 ARELVGVDLSKQQQSSDWAVETLSPAQLDYAASDVLYLHDIMGALYKRLEREDRMDLARE 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R LDL GWEN DIFSHS Sbjct: 180 CFRFLPMRVRLDLAGWENEDIFSHS 204 >gi|154244026|ref|YP_001414984.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2] gi|154158111|gb|ABS65327.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2] Length = 206 Score = 289 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 120/207 (57%), Positives = 150/207 (72%), Gaps = 4/207 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 TIR+H GD+PA+ A +A+DTET+GL P RDRLC+VQLS GDG+ D+++I G Sbjct: 2 TIRLHRGDLPADFVA--APVVAIDTETMGLNPFRDRLCLVQLSNGDGSADLVQIPQGADA 59 Query: 62 -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 APNL +L D K+FH+GRFDIAVL +TF V +PV+CTKIASRL RTYT++HGLK Sbjct: 60 TTAPNLTRLLADPAITKLFHFGRFDIAVLQHTFHVMPQPVWCTKIASRLVRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D L+E + ++ISK QQSSDW A DLSD QL YAASDV+HLHA++ + E L R R+ LA Sbjct: 120 DLLRETINVDISKQQQSSDWGAKDLSDAQLAYAASDVLHLHAVKAKLEEMLARENRTGLA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA LDL GW DIF+HS Sbjct: 180 AACFAFLPARAALDLSGWAEEDIFAHS 206 >gi|84684593|ref|ZP_01012494.1| exonuclease, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667572|gb|EAQ14041.1| exonuclease, putative [Rhodobacterales bacterium HTCC2654] Length = 203 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 105/202 (51%), Positives = 141/202 (69%), Gaps = 2/202 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC+VQ+S GDG ++++ GQ AP Sbjct: 4 HLYKCDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQMSGGDGHAHMVQVERGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML D KIFH+GRFDIA L FGV PV+CTKIAS+L RTYT++HGLK L+ Sbjct: 62 NLTAMLTDPNVLKIFHFGRFDIAALLNAFGVVTAPVYCTKIASKLIRTYTDRHGLKTLLE 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E+L I+ISK QQ +DW A +L++ QL YAASDV++LH LR + +L R GR++LA +C Sbjct: 122 EILRIDISKYQQQTDWGARELTEAQLDYAASDVLYLHRLREKLDGRLAREGRAELAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSH 206 +FL RA+LDL GW + DIF+H Sbjct: 182 DFLPARAQLDLAGWPDTDIFTH 203 >gi|227824096|ref|YP_002828069.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234] gi|227343098|gb|ACP27316.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234] Length = 208 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 151/206 (73%), Positives = 171/206 (83%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TIR HEGDI A AARY AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK Sbjct: 3 NTIRFHEGDISAADAARYAGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNLV ML D R+KIFH+GRFDIAVLF+TFGV PVFCTKIASRLTRTYT++HGLKD Sbjct: 63 EAPNLVRMLADPARQKIFHFGRFDIAVLFHTFGVTSTPVFCTKIASRLTRTYTDRHGLKD 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 NLKELL ++ISK QQSSDW+AD LS QL+YAASDV+HLHALR + T +L R GR + A Sbjct: 123 NLKELLDVDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLIRDGRMEHAD 182 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGWE DIF+HS Sbjct: 183 ACFAFLPTRAKLDLLGWEETDIFAHS 208 >gi|294675670|ref|YP_003576285.1| ribonuclease D [Rhodobacter capsulatus SB 1003] gi|294474490|gb|ADE83878.1| ribonuclease D-1 [Rhodobacter capsulatus SB 1003] Length = 204 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 109/205 (53%), Positives = 146/205 (71%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H+ D+P +A+DTET+GL PRRDRLC+VQ+S GDG +++IA GQ Sbjct: 2 TIHLHQNDLPEGLDLG--PVVAIDTETMGLDPRRDRLCLVQMSSGDGHAHLVQIAKGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 AP L ML D K EK+FH+ RFDIA L+ FGV PVFCTKIAS++ RT+T++HGLK Sbjct: 60 APRLCAMLADPKVEKLFHFARFDIAALYNAFGVVTAPVFCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L++L+G+++SK QQ+SDW A +L+ QL YAASDV++LH L+ +L R GR++LA + Sbjct: 120 LQDLVGVDVSKQQQTSDWGAAELTAAQLDYAASDVLYLHQLKAALVTRLAREGRTELAQA 179 Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206 C +FL RA LDL+GWE DIF H Sbjct: 180 CFDFLPARARLDLMGWEEPNDIFHH 204 >gi|254463169|ref|ZP_05076585.1| 3'-5' exonuclease [Rhodobacterales bacterium HTCC2083] gi|206679758|gb|EDZ44245.1| 3'-5' exonuclease [Rhodobacteraceae bacterium HTCC2083] Length = 203 Score = 288 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 106/204 (51%), Positives = 142/204 (69%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T +++ DIPA+ +A+D ET+GL P RDRLC++Q+S GDG ++++A GQ Sbjct: 2 TNTLYQNDIPADLDLG--PVVAIDCETMGLHPHRDRLCVIQMSGGDGNAHLVQVAKGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K+FH+GRFDIA + FG PV+CTKIAS+L RTYT++HGLK+ Sbjct: 60 APNLCKMLTDPNVLKLFHFGRFDIAAMQNAFGAVTAPVYCTKIASKLIRTYTDRHGLKNL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L+ELL I+ISK QQSSDW + L++ QL+YAASDV++LH LR + ++L R R +A + Sbjct: 120 LQELLNIDISKQQQSSDWGSAKLTNAQLEYAASDVLYLHRLRTELNKRLIREDRMVIAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA LDL GW DIFSH Sbjct: 180 CFDFLPMRANLDLKGWPEQDIFSH 203 >gi|218530671|ref|YP_002421487.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4] gi|218522974|gb|ACK83559.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4] Length = 209 Score = 288 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 109/204 (53%), Positives = 145/204 (71%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 IR+H D+P + A AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I Sbjct: 8 IRLHHCDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPSDPAP 65 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L +L D KIFH+ RFD+AVLF FGV PV+CTKIAS+L RTYT++HGLKD + Sbjct: 66 ERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVV 125 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +EL+G+++SK QQSSDW A LS Q+ YAASDV+HLHA R + L R GR+++A +C Sbjct: 126 RELVGVDLSKQQQSSDWGAATLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQAC 185 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 +FL R++LDL GW +DIF+H+ Sbjct: 186 FDFLPTRSKLDLAGWPEIDIFAHA 209 >gi|298290361|ref|YP_003692300.1| 3'-5' exonuclease [Starkeya novella DSM 506] gi|296926872|gb|ADH87681.1| 3'-5' exonuclease [Starkeya novella DSM 506] Length = 210 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 120/209 (57%), Positives = 158/209 (75%), Gaps = 4/209 (1%) Query: 3 TIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 +IR+H GD+ +A+DTETLGL P RDRLC+VQLSPGDGT D+++I AG Sbjct: 2 SIRLHRGDLVDLSRYTPENAPFVAIDTETLGLNPHRDRLCVVQLSPGDGTADVVQIPAGA 61 Query: 61 K--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 +APNL +L D + K+FH+ RFD+AVL TFG+ V PV+CTKIASRLTRTYT++HG Sbjct: 62 GPGSAPNLEALLTDPRITKLFHFARFDVAVLGKTFGLTVAPVWCTKIASRLTRTYTDRHG 121 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 LK+ ++EL+G+++SK QQSSDW+A++LS+ QLQYAASDV++LHALR + L R GR++ Sbjct: 122 LKELVRELIGVDLSKQQQSSDWAAEELSEAQLQYAASDVLYLHALREKLASMLARDGRTE 181 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSHS 207 LA SC FL RA+LDL GW + DIF+HS Sbjct: 182 LAQSCFEFLPTRAKLDLAGWPDEDIFAHS 210 >gi|217976351|ref|YP_002360498.1| 3'-5' exonuclease [Methylocella silvestris BL2] gi|217501727|gb|ACK49136.1| 3'-5' exonuclease [Methylocella silvestris BL2] Length = 204 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 121/204 (59%), Positives = 153/204 (75%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H+GD+P A + A+A+DTET+GL+P RDRLC+VQLS GDG+ D+++IA Q Sbjct: 2 TIRLHKGDLPEGEA--FSGAVAIDTETMGLVPGRDRLCLVQLSRGDGSADLVQIAPAQTA 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D EK+FH+ RFDIAVL+ TFGV P++CTKIAS+L RTYT++HGLKD Sbjct: 60 APNLTRLLADPAVEKLFHFARFDIAVLYKTFGVMTGPIYCTKIASKLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLGI +SK QQSSDW D LS+ QL YAASDV+HLHALR + L+R GR LA + Sbjct: 120 ARELLGIELSKQQQSSDWGGDILSEAQLAYAASDVLHLHALRTKLDAMLEREGRRALAEA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA+LDL+GW + DIFSH Sbjct: 180 SFAFLPTRAKLDLMGWGDSDIFSH 203 >gi|254487503|ref|ZP_05100708.1| ribonuclease D [Roseobacter sp. GAI101] gi|214044372|gb|EEB85010.1| ribonuclease D [Roseobacter sp. GAI101] Length = 204 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 104/204 (50%), Positives = 137/204 (67%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T V++ D+P +A+D ET+GL P RDRLC+VQLS GDG +++I GQ Sbjct: 2 TNTVYQNDLPDGLDLG--PIVAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQIGKGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA + FG + PV+CTKIASRL RT+T++HGL Sbjct: 60 APNLCALLEDPEVLKLFHFGRFDIAAMQNAFGAKTAPVYCTKIASRLVRTFTDRHGLAKL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG +ISK QQSSDW A L+ Q+ YAASDV++LH LR + L R R D+A + Sbjct: 120 CQELLGTDISKQQQSSDWGAAQLTQAQIDYAASDVLYLHQLRDKLNAMLIREDRMDIAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA+LDL GW + DIF+H Sbjct: 180 CFDFLPMRAQLDLAGWPDTDIFAH 203 >gi|163745220|ref|ZP_02152580.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex HEL-45] gi|161382038|gb|EDQ06447.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex HEL-45] Length = 204 Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 106/207 (51%), Positives = 142/207 (68%), Gaps = 3/207 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT +++ D+P + +A+D ET+GL P RDRLC+VQLS GDG +++IA GQ Sbjct: 1 MTNF-LYQNDLPDDLDLG--PMVAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQIAKGQ 57 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 APNL +L + K+FHYGRFDIA + FG PV+CTKIASRL RTYT++HGL Sbjct: 58 TEAPNLCALLENPHVLKLFHYGRFDIAAMLNAFGATAAPVYCTKIASRLIRTYTDRHGLA 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +ELL ++ISK QQSSDW A +L+ Q+ YAASDV++LH LR + ++L R GR D+A Sbjct: 118 KLCQELLSVDISKQQQSSDWGAKELTQAQIDYAASDVLYLHRLRDELNKRLIREGRMDMA 177 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LDL GW + DIF+H+ Sbjct: 178 QACFDFLPMRARLDLEGWPDTDIFAHA 204 >gi|182677567|ref|YP_001831713.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039] gi|182633450|gb|ACB94224.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039] Length = 204 Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 118/204 (57%), Positives = 154/204 (75%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +H+GD+P + + ++AVDTETLGL+P RDRLC+VQLS GDG +++I GQ +A Sbjct: 3 IHLHKGDLPENVS--FGRSVAVDTETLGLLPHRDRLCLVQLSGGDGQAHLVQIKPGQTHA 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P+L +L+D K+FHY RFDIAVL+ TFG P++CTKIAS+LTRTYT++HGLKD Sbjct: 61 PHLERLLIDPNVTKLFHYARFDIAVLYKTFGTMTTPLYCTKIASKLTRTYTDRHGLKDLA 120 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +ELLG+++SK QQSSDW AD LSD QL YAASDV+HLHALR + L+R R++LA +C Sbjct: 121 RELLGVDLSKQQQSSDWGADTLSDAQLTYAASDVLHLHALRTKLDGMLEREHRTELAQAC 180 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW DIFSH+ Sbjct: 181 FDFLPTRAKLDLAGWAETDIFSHA 204 >gi|149912958|ref|ZP_01901492.1| exonuclease, putative [Roseobacter sp. AzwK-3b] gi|149813364|gb|EDM73190.1| exonuclease, putative [Roseobacter sp. AzwK-3b] Length = 203 Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats. Identities = 102/202 (50%), Positives = 139/202 (68%), Gaps = 2/202 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC+VQ+S GDG +++I GQ AP Sbjct: 4 YLYKNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQMSGGDGNAYLVQIDKGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL +L + K+FH+GRFDIA +F FG PV+CTKIAS+L RTYT++HGLK+ ++ Sbjct: 62 NLAALLENPDILKLFHFGRFDIAAMFNAFGALAAPVYCTKIASKLVRTYTDRHGLKNLMQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELL +ISK QQSSDW A L++ QL YAASDV++LH LR + L R GR ++A +C Sbjct: 122 ELLDKDISKQQQSSDWGAPKLTEAQLDYAASDVLYLHQLRDELNRMLAREGRVEMAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSH 206 +FL RA+LDL GW +DIF+H Sbjct: 182 DFLPIRAKLDLAGWPEIDIFAH 203 >gi|119713543|gb|ABL97595.1| putative exonuclease [uncultured marine bacterium EB0_39F01] Length = 204 Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats. Identities = 103/207 (49%), Positives = 141/207 (68%), Gaps = 3/207 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT ++ D+P +A+DTET+GL P RDRLC++Q S GDG I++I Sbjct: 1 MTNF-TYKNDLPDNLELG--PIVAIDTETMGLNPMRDRLCVIQFSSGDGNAHIVQIEPDA 57 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 APN+ +L+D+ + K+FH+ RFDIA+L + F + + PV+CTKIAS+L RTYTN+HGLK Sbjct: 58 PQAPNICKILLDQNKVKLFHFARFDIAILKHHFKINISPVYCTKIASKLVRTYTNKHGLK 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + L+E+L I ISK QQSSDW A +L+ Q++YAASDV++LH L + L+R R ++A Sbjct: 118 NLLREMLSIEISKQQQSSDWGASELTKAQIEYAASDVLYLHKLMDKLNLNLKRENRYEIA 177 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C NFL RA LDL GW DIFSHS Sbjct: 178 EACFNFLPMRATLDLAGWSEDDIFSHS 204 >gi|170743378|ref|YP_001772033.1| 3'-5' exonuclease [Methylobacterium sp. 4-46] gi|168197652|gb|ACA19599.1| 3'-5' exonuclease [Methylobacterium sp. 4-46] Length = 204 Score = 286 bits (734), Expect = 9e-76, Method: Composition-based stats. Identities = 117/205 (57%), Positives = 146/205 (71%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 R+H GD+P + A AIAVDTETLGL P RDRLC+VQ+S GDG D+++IA G Sbjct: 2 PHRLHRGDLPDDYA--PGPAIAVDTETLGLEPHRDRLCVVQISRGDGEADLVQIAKGGPE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L D KIFH+ RFD+AVLF+ GV P++CTK+ASRL+RTYT++HGLKD Sbjct: 60 PVVLKRVLTDPAVTKIFHFARFDLAVLFHRLGVMPGPIYCTKVASRLSRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLGI ISK QQSSDW A+ LS Q++YAASDV+HLHALR + L R R+ LA + Sbjct: 120 VRELLGIEISKQQQSSDWGAETLSPAQIEYAASDVLHLHALRAKLDAMLAREERTALAEA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDLLGW+ VDI +HS Sbjct: 180 CFAFLPTRARLDLLGWDEVDILAHS 204 >gi|110636308|ref|YP_676516.1| 3'-5' exonuclease [Mesorhizobium sp. BNC1] gi|110287292|gb|ABG65351.1| 3'-5' exonuclease [Chelativorans sp. BNC1] Length = 205 Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 126/205 (61%), Positives = 161/205 (78%), Gaps = 1/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+ D+P + VDA+A+DTETLGL P RDRLC+VQLSPGDGT D+++IAAGQ+ Sbjct: 2 TIRFHQYDLPD-LSRYDVDAVAIDTETLGLNPHRDRLCVVQLSPGDGTADVVQIAAGQRR 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L + + K+FHY RFDIAVL+++FGV PVFCTKIASRLTRTYT++HGLKD Sbjct: 61 APNLVALLRNRRITKLFHYARFDIAVLYHSFGVMPDPVFCTKIASRLTRTYTDRHGLKDI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL +N+SKAQQSSDW+A+ L+ EQL+YAASDV++LH L ++L R GR+ A + Sbjct: 121 CYELLQVNLSKAQQSSDWAAEQLTPEQLEYAASDVLYLHRLADVLQQRLMRDGRAREAQA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDL+GW+ DIF+HS Sbjct: 181 CFKFLPTRAKLDLMGWDEQDIFAHS 205 >gi|328545553|ref|YP_004305662.1| 3'-5' exonuclease [polymorphum gilvum SL003B-26A1] gi|326415294|gb|ADZ72357.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1] Length = 206 Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 122/205 (59%), Positives = 155/205 (75%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+ D+P A A+AVDTETLGL P RDRLC+VQLSPGDGT D+++IA GQ+ Sbjct: 2 TIRHHKTDLPDLSAYDAAQAVAVDTETLGLNPHRDRLCVVQLSPGDGTADVVQIARGQRA 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + KIFH+ RFD+AVL + G+ V PV+CTKIAS+L RTYT++HGLKD Sbjct: 62 APNLARLLTDPAKMKIFHFARFDLAVLRHNLGIEVAPVWCTKIASKLVRTYTDRHGLKDI 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG+++SK QQSSDW+A+ L+D QL YAASDV+HLHALR + L+R R+ LA + Sbjct: 122 TRELLGVDLSKQQQSSDWAAETLTDAQLAYAASDVLHLHALREKLAAMLEREERTALARA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDL+GWE DIF+H+ Sbjct: 182 CYEFLPTRAALDLMGWEEQDIFAHT 206 >gi|254470791|ref|ZP_05084194.1| 3'-5' exonuclease [Pseudovibrio sp. JE062] gi|211959933|gb|EEA95130.1| 3'-5' exonuclease [Pseudovibrio sp. JE062] Length = 206 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 112/205 (54%), Positives = 148/205 (72%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+ D+P DA+AVDTETLGL P RDRLC+VQLS GDG+ D+++I GQ Sbjct: 2 TIRYHKNDLPDLSNYSSADAVAVDTETLGLNPHRDRLCVVQLSSGDGSADVVQIERGQLA 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL + D + KIFH+ RFD+A+L + V PV+CTKIAS+L RTYT++HGLKD Sbjct: 62 APNLQALFEDASKPKIFHFARFDVAILKEYLDISVSPVWCTKIASKLVRTYTDRHGLKDI 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G+++SK QQSSDW+A+ L+D QL YAASDV+HLH L+ + L+R R+++A Sbjct: 122 CRELIGVDLSKQQQSSDWAAEKLTDAQLAYAASDVLHLHKLKERLEFMLEREERTEIAQK 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDL GW DIF+HS Sbjct: 182 CFDFLPTRAQLDLAGWPETDIFAHS 206 >gi|163757673|ref|ZP_02164762.1| putative ribonuclease [Hoeflea phototrophica DFL-43] gi|162285175|gb|EDQ35457.1| putative ribonuclease [Hoeflea phototrophica DFL-43] Length = 207 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 136/207 (65%), Positives = 163/207 (78%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IR H+GDI + ARY IAVDTETLGL+PRRDRLC+VQLSPGDG+ D+I+IA GQ Sbjct: 1 MADIRAHKGDISDQAMARYTGDIAVDTETLGLVPRRDRLCVVQLSPGDGSADVIQIAKGQ 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K APNLV +L D KR K+FHYGRFDIAVL+ FGV PVFCTKIASRLTRTYT++HGLK Sbjct: 61 KRAPNLVALLTDRKRRKLFHYGRFDIAVLYNAFGVTTEPVFCTKIASRLTRTYTDRHGLK 120 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D +ELL +++SK QQSSDW+A+ L+ QL+YAASDV+HLHAL + TE+LQR R A Sbjct: 121 DVTRELLEVDLSKQQQSSDWAAETLTPAQLEYAASDVLHLHALTAKLTERLQRDDREAHA 180 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDL+GWE DIF+HS Sbjct: 181 KACFEFLPTRAKLDLMGWEETDIFAHS 207 >gi|163738084|ref|ZP_02145500.1| exonuclease, putative [Phaeobacter gallaeciensis BS107] gi|161388700|gb|EDQ13053.1| exonuclease, putative [Phaeobacter gallaeciensis BS107] Length = 204 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 108/203 (53%), Positives = 143/203 (70%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC+VQLS GDG +++IA GQ AP Sbjct: 4 HLYQNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQLSGGDGNAHMVQIAKGQSEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML D K+FH+GRFDIA +++ FG PV+CTKIASRL RTYT++HGL++ + Sbjct: 62 NLCAMLEDPNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLRNLTQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 EL+G++ISK QQ SDW A LSD QL YAASDV+HLH LR ++L R RS++A +C Sbjct: 122 ELIGVDISKQQQMSDWGAAQLSDAQLDYAASDVLHLHRLRAALDKRLDREDRSEMAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW + DIF+HS Sbjct: 182 DFLPMRAKLDLAGWSDTDIFAHS 204 >gi|114769797|ref|ZP_01447407.1| exonuclease, putative [alpha proteobacterium HTCC2255] gi|114549502|gb|EAU52384.1| exonuclease, putative [alpha proteobacterium HTCC2255] gi|161170293|gb|ABX59263.1| 5-exonuclease family protein [uncultured marine bacterium EB000_55B11] gi|297183821|gb|ADI19944.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 204 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 103/207 (49%), Positives = 141/207 (68%), Gaps = 3/207 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT ++ D+P +A+DTET+GL P RDRLC++Q S GDG I++I Sbjct: 1 MTNF-TYKNDLPDNLELG--PIVAIDTETMGLNPMRDRLCVIQFSSGDGHAHIVQIEPDA 57 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 APN+ +L+D+ + K+FH+ RFDIA+L + F + + PV+CTKIAS+L RTYTN+HGLK Sbjct: 58 PQAPNICKILLDQNKVKLFHFARFDIAILKHHFKINISPVYCTKIASKLVRTYTNKHGLK 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + L+E+L I ISK QQSSDW A +L+ Q++YAASDV++LH L + L+R R ++A Sbjct: 118 NLLREMLSIEISKQQQSSDWGASELTKAQIEYAASDVLYLHKLMDKLNLNLKRENRYEIA 177 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C NFL RA LDL GW DIFSHS Sbjct: 178 EACFNFLPMRATLDLAGWSEDDIFSHS 204 >gi|89067364|ref|ZP_01154877.1| exonuclease, putative [Oceanicola granulosus HTCC2516] gi|89046933|gb|EAR52987.1| exonuclease, putative [Oceanicola granulosus HTCC2516] Length = 203 Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 107/202 (52%), Positives = 144/202 (71%), Gaps = 2/202 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC+VQ+S GDG ++++A GQ +AP Sbjct: 4 HLYKNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQMSGGDGHAHLVQVAKGQTSAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NLV ML + K+FH+GRFDIA L FG R PV+CTKIAS+L RT+T++HGLK L+ Sbjct: 62 NLVAMLENPDVLKLFHFGRFDIAALMNAFGARTAPVYCTKIASKLVRTFTDRHGLKVLLQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 +L+G+++SK QQ SDW A+ LSD QL YAASDV+HLH LR + E L R GR+ +A +C Sbjct: 122 DLVGVDVSKHQQQSDWGAETLSDAQLDYAASDVLHLHRLREKLDEMLAREGRTMIAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSH 206 +FL RA+LDL GW + DIFSH Sbjct: 182 DFLPTRAQLDLAGWPDQDIFSH 203 >gi|260428903|ref|ZP_05782880.1| 3'-5' exonuclease [Citreicella sp. SE45] gi|260419526|gb|EEX12779.1| 3'-5' exonuclease [Citreicella sp. SE45] Length = 204 Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 107/203 (52%), Positives = 142/203 (69%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++GD+P +A+D ET+GL P RDRLC+VQLS GDG ++++A GQ AP Sbjct: 4 HLYKGDLPDGLDLG--PVVAIDCETMGLDPHRDRLCVVQLSGGDGNAHLVQVARGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL +L DE K+FH+GRFDIA +++ FG PV+CTKIASR+ RTYT++HGLK + Sbjct: 62 NLCRLLRDETVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRMVRTYTDRHGLKALTQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELL ++ISK QQSSDW A DL+ QL YAASDV++LH LR + L+R GR+ LA +C Sbjct: 122 ELLSVDISKQQQSSDWGAADLTAAQLDYAASDVLYLHQLRDRLNGMLEREGRTALAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA LDL GW DIF+H+ Sbjct: 182 DFLPTRALLDLEGWPETDIFAHA 204 >gi|149201444|ref|ZP_01878419.1| exonuclease, putative [Roseovarius sp. TM1035] gi|149145777|gb|EDM33803.1| exonuclease, putative [Roseovarius sp. TM1035] Length = 203 Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 106/202 (52%), Positives = 139/202 (68%), Gaps = 2/202 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC+VQLS GDG +++++ GQ AP Sbjct: 4 HLYQNDLPDGLDLG--PVVAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQVSKGQTTAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL +L + K+FH+GRFDIA + FG PV+CTKIAS+L RTYT++HGLK L+ Sbjct: 62 NLARLLENPDVLKLFHFGRFDIAAMQNAFGALAAPVYCTKIASKLIRTYTDRHGLKYLLQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELL I+ISK QQSSDW AD LS QL YAASDV++LH LR + +L R GR +LA +C Sbjct: 122 ELLNIDISKQQQSSDWGADSLSAAQLDYAASDVLYLHRLRDELNARLIREGRMELAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSH 206 +FL RA LDL GW +DIF+H Sbjct: 182 DFLPQRALLDLAGWPEIDIFAH 203 >gi|163742520|ref|ZP_02149906.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10] gi|161384105|gb|EDQ08488.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10] Length = 226 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 108/203 (53%), Positives = 143/203 (70%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC+VQLS GDG +++IA GQ AP Sbjct: 26 HLYQNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQLSGGDGNAHMVQIAKGQSEAP 83 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML D K+FH+GRFDIA +++ FG PV+CTKIASRL RTYT++HGL++ + Sbjct: 84 NLCAMLEDLNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLRNLTQ 143 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 EL+G++ISK QQ SDW A LSD QL YAASDV+HLH LR ++L R RS++A +C Sbjct: 144 ELIGVDISKQQQMSDWGAAQLSDAQLDYAASDVLHLHRLRAALDKRLDREDRSEMAQACF 203 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW + DIF+HS Sbjct: 204 DFLPMRAKLDLAGWSDTDIFAHS 226 >gi|329114438|ref|ZP_08243200.1| Ribonuclease D [Acetobacter pomorum DM001] gi|326696514|gb|EGE48193.1| Ribonuclease D [Acetobacter pomorum DM001] Length = 256 Score = 284 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 102/208 (49%), Positives = 140/208 (67%), Gaps = 7/208 (3%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--- 60 I +H D+P + ++AVDTET+GL P RDRLC+VQLS GDGT +++I Sbjct: 49 ITLHRNDLPDNVT--FTGSVAVDTETMGLNPHRDRLCLVQLSAGDGTAHLVQIIPTSLGG 106 Query: 61 --KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + PNL ++ D KI H+ RFD+A+L + G+ V PV CTKIA+RL RT+T++HG Sbjct: 107 KGYDCPNLKRVMADPSITKIMHFARFDVAILQHALGITVSPVVCTKIAARLVRTFTDRHG 166 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L +++LG+ +SK QQ+SDW A +L EQL YAASDV++LHAL + + L R GR + Sbjct: 167 LAALCRDMLGVELSKQQQTSDWGALELKPEQLAYAASDVLYLHALWDKMSALLDREGRRE 226 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA +C +FL RA LDLLG+E+ DIFSH Sbjct: 227 LAQACYDFLPARARLDLLGYEDPDIFSH 254 >gi|310817096|ref|YP_003965060.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25] gi|308755831|gb|ADO43760.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25] Length = 227 Score = 284 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 106/206 (51%), Positives = 142/206 (68%), Gaps = 3/206 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M +++ D+P + IA+D ET+GL P RDRLC+VQ+S GDG +I+I+ GQ Sbjct: 25 MANF-LYQNDLPDDLDLG--PVIAIDCETMGLNPHRDRLCLVQISGGDGNAHMIQISPGQ 81 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 ++APNL ML D K+FHYGRFDIA +++ FG +PV+CTKIAS++ RTYT +HGLK Sbjct: 82 RSAPNLARMLEDANILKLFHYGRFDIAAMYHAFGALAQPVYCTKIASKMVRTYTERHGLK 141 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L++L+G++ISK QQ SDW A L+ QL YAASDV++LH LR L R GR+ LA Sbjct: 142 FLLQDLIGVDISKHQQQSDWGAASLTPAQLDYAASDVLYLHRLRAHLDALLAREGRTGLA 201 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RA LDL GW+ DIF+H Sbjct: 202 QACFDFLPTRARLDLEGWQENDIFAH 227 >gi|126724660|ref|ZP_01740503.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150] gi|126705824|gb|EBA04914.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150] Length = 203 Score = 284 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 105/202 (51%), Positives = 138/202 (68%), Gaps = 2/202 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V++ D+P +A+D ET+GL P RDRLC++Q+S GDG ++++ GQ AP Sbjct: 4 TVYKRDLPDGLDLG--PVVAIDCETMGLNPIRDRLCLIQMSNGDGNAHMVQVEKGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML D K+FH+GRFDIA + FGV PV+CTKIAS++ RTYT++HGL++ L+ Sbjct: 62 NLCRMLADPNVLKLFHFGRFDIAAMHNAFGVLTEPVYCTKIASKMVRTYTDRHGLRNLLQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELL ++ISK QQ SDW A+ L+ QL YAASDV+HLH LR + E L R GR +LA SC Sbjct: 122 ELLKVDISKFQQMSDWGAETLTKAQLDYAASDVLHLHRLRDRLNELLVREGRMELAQSCF 181 Query: 185 NFLMDRAELDLLGWENVDIFSH 206 +FL RA LDL GW DIF+H Sbjct: 182 DFLPSRALLDLKGWPETDIFAH 203 >gi|163867544|ref|YP_001608743.1| hypothetical protein Btr_0277 [Bartonella tribocorum CIP 105476] gi|161017190|emb|CAK00748.1| Ribonuclease D [Bartonella tribocorum CIP 105476] Length = 206 Score = 284 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 130/207 (62%), Positives = 159/207 (76%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P DAIA+DTETLGL P RDRLC+VQ+SPGDGT DII+IA GQ Sbjct: 1 MAEIRVHQGDLP-NLDNYKTDAIAIDTETLGLQPHRDRLCVVQISPGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 KNAPNLV +L D KIFH+GRFD+A+L +TFGV VFCTKIAS+LTRTYT++HGLK Sbjct: 60 KNAPNLVKLLEDNAVTKIFHFGRFDLAILAHTFGVMPEAVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+A+ LS Q++YAASDV++LH L+ F E+L+R R +A Sbjct: 120 EICNELLNVNISKQQQSSDWAAETLSQAQIEYAASDVLYLHRLKAIFEERLRREERESVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW VDIF+HS Sbjct: 180 KACFQFLPMRAKLDLLGWSEVDIFAHS 206 >gi|99079868|ref|YP_612022.1| 3'-5' exonuclease [Ruegeria sp. TM1040] gi|99036148|gb|ABF62760.1| 3'-5' exonuclease [Ruegeria sp. TM1040] Length = 204 Score = 284 bits (728), Expect = 4e-75, Method: Composition-based stats. Identities = 111/207 (53%), Positives = 145/207 (70%), Gaps = 3/207 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M T +++ D+P +A+D ET+GL P RDRLC+VQ+S GDG +++IA GQ Sbjct: 1 MAT-HLYQHDLPNSLDLG--PVVAIDCETMGLNPHRDRLCVVQMSSGDGDAHLVQIAKGQ 57 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNL ML + K+FHYGRFDIA L++ FG PV+CTKIASRL RTYT++HGLK Sbjct: 58 TDAPNLTAMLTNPDVLKLFHYGRFDIAALYHRFGALAAPVYCTKIASRLVRTYTDRHGLK 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++LLG +ISK QQ SDW A+ L+ Q+ YAASDV+HLH LR ++L R GRSDLA Sbjct: 118 NLTQDLLGQDISKQQQMSDWGAETLTRAQMDYAASDVLHLHRLRDALDQRLVREGRSDLA 177 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LDL GW + DIF+HS Sbjct: 178 QACFDFLPTRARLDLAGWPDTDIFAHS 204 >gi|154250652|ref|YP_001411476.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1] gi|154154602|gb|ABS61819.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1] Length = 203 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 105/203 (51%), Positives = 140/203 (68%), Gaps = 2/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +H GD+P + + +++AVDTET+GL P RD+LC+VQLS GDG I+++ G NA Sbjct: 3 VTLHRGDLPEGLS--FGESVAVDTETMGLHPERDQLCVVQLSAGDGNAHIVQLDRGTYNA 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L ++ D KIFH+ RFD+A+L GV PV+CTKIAS+L RTYT++HGLKD Sbjct: 61 PRLRALMADPAILKIFHFARFDVAMLQRYLGVVTAPVYCTKIASKLVRTYTDRHGLKDLA 120 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +EL+ I++SK QQSSDW A L+D QL YAASDV+HLH ++ L R GR++LA +C Sbjct: 121 RELVNIDMSKQQQSSDWGAASLTDAQLSYAASDVLHLHEIKSVLDGMLAREGRTELARAC 180 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL RA LDL GW DIF+H Sbjct: 181 FAFLPVRAALDLAGWPEEDIFAH 203 >gi|254438617|ref|ZP_05052111.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307] gi|198254063|gb|EDY78377.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307] Length = 203 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 103/202 (50%), Positives = 140/202 (69%), Gaps = 2/202 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P + +A+D ET+GL P RDRLC++QLS GDG +I+I+ GQ AP Sbjct: 4 HLYQHDLPDDLDLG--PVVAIDCETMGLNPHRDRLCLIQLSSGDGNCHLIQISVGQTTAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL +L D + K+FH+GRFDIA + FG PV+CTKIAS+L RTYT++HGLK+ L+ Sbjct: 62 NLCKVLADPQVLKLFHFGRFDIAAMLNAFGTVTAPVYCTKIASKLIRTYTDRHGLKNLLQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E L ++ISK QQ SDW A+ LS Q+ YAASDV++LH LR + +L R R+D+A +C Sbjct: 122 EFLRVDISKFQQQSDWGAETLSKAQIDYAASDVLYLHQLRDELNIRLVRERRTDMAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSH 206 +FL RA+LDL GW DIFSH Sbjct: 182 DFLPMRAKLDLAGWPEQDIFSH 203 >gi|159046129|ref|YP_001534923.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12] gi|157913889|gb|ABV95322.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12] Length = 203 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 112/204 (54%), Positives = 140/204 (68%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T +H D+P +A+DTET+GL+P RDRLC+VQLS GDG +++IA GQ Sbjct: 2 TNHLHSHDLPDGLDLG--PVVAIDTETMGLVPARDRLCVVQLSSGDGDAHMVQIAQGQTE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K K+FHY RFD+A L FGVR P++CTKIAS+L RTYT++HGLK Sbjct: 60 APNLTRMLTDPKVLKLFHYARFDVAALENAFGVRTAPIYCTKIASKLVRTYTDRHGLKAL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L E+LG+++SKAQQSSDW A LS QL YAASDV++LH L+ L R GR++LA + Sbjct: 120 LSEVLGVDVSKAQQSSDWGAPTLSAAQLDYAASDVLYLHRLKEALDGMLAREGRTELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL RA LDL GW +DIF H Sbjct: 180 CFEFLPTRARLDLGGWSEIDIFHH 203 >gi|114764076|ref|ZP_01443315.1| exonuclease, putative [Pelagibaca bermudensis HTCC2601] gi|114543434|gb|EAU46449.1| exonuclease, putative [Roseovarius sp. HTCC2601] Length = 204 Score = 283 bits (726), Expect = 9e-75, Method: Composition-based stats. Identities = 110/203 (54%), Positives = 139/203 (68%), Gaps = 2/203 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++GD+P +A+D ET+GL P RDRLC+VQLS GDG ++++A GQ AP Sbjct: 4 HLYKGDLPDGLDLG--PVVAIDCETMGLEPHRDRLCVVQLSGGDGNAHLVQVAKGQTEAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL +L DE K+FHYGRFDIA ++ FG PV+CTKIASR+ RTYT++HGLK + Sbjct: 62 NLCRLLRDECVLKLFHYGRFDIAAMYNAFGALAAPVYCTKIASRMVRTYTDRHGLKTLTQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELL ++ISK QQSSDW A+ L++ Q YAASDV+HLH LR L R GRS LA SC Sbjct: 122 ELLSVDISKQQQSSDWGAETLTEAQRDYAASDVLHLHKLREALDGMLAREGRSALAQSCF 181 Query: 185 NFLMDRAELDLLGWENVDIFSHS 207 +FL RA LDL GW DIF+HS Sbjct: 182 DFLPTRALLDLEGWPGTDIFAHS 204 >gi|119385336|ref|YP_916392.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222] gi|119375103|gb|ABL70696.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222] Length = 204 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 114/205 (55%), Positives = 150/205 (73%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI ++ D+P + +A+DTET+GL PRRDRLC+VQLS GDG +++IA GQ+ Sbjct: 2 TITLYRNDLPDDLDLG--PVVAIDTETMGLDPRRDRLCLVQLSSGDGNAHLVQIAKGQRE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K K+FH+GRFDIA L FGV +PV+CTKIAS++ RTYT++HGLK Sbjct: 60 APNLARMLADPKVLKLFHFGRFDIAALEAAFGVVTKPVWCTKIASKMVRTYTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G++ISK QQ+SDW A +LS+ QL+YAASDV++LHAL+ + ++L R GR LA + Sbjct: 120 LSELVGVDISKQQQTSDWGAAELSEAQLEYAASDVLYLHALKAELEKRLAREGRLGLAQA 179 Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206 C +FL RA LDLLGW + DIF H Sbjct: 180 CFDFLPARAHLDLLGWGDENDIFHH 204 >gi|103487824|ref|YP_617385.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256] gi|98977901|gb|ABF54052.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256] Length = 205 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 3/206 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-K 61 ++ HE D+P + A+AVDTET+GL P RDRLC+VQ+S G G ++R G Sbjct: 2 SVYFHEEDLPEDVL--GPGAVAVDTETMGLNPLRDRLCLVQISDGSGDEHLVRFRPGSSY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +AP L +L D +R K+FH+ RFDIA L GV PV+CTKIAS+L RTYT++HGLK+ Sbjct: 60 DAPVLKAILADPERLKLFHFARFDIAALQQALGVVTTPVYCTKIASKLVRTYTDRHGLKE 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +SK QQSSDW A +LS+ Q YAASDV LHA++ +L R GR++LA Sbjct: 120 LVRELLGQEVSKQQQSSDWGAAELSEAQRDYAASDVRFLHAMKEILDARLAREGRTELAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LDL GW VDIF+HS Sbjct: 180 ACFDFLPTRAALDLAGWPEVDIFAHS 205 >gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03] gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07] gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22] gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26] gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32] gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12] Length = 217 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 103/208 (49%), Positives = 140/208 (67%), Gaps = 7/208 (3%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--- 60 I +H D+P + ++AVDTET+GL P RDRLC+VQLS GDGT +++I Sbjct: 10 ITLHRNDLPDNVT--FTGSVAVDTETMGLNPHRDRLCLVQLSAGDGTAHLVQIIPTSLGG 67 Query: 61 --KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + PNL +L D KI H+ RFD+A+L + G+ V PV CTKIA+RL RT+T++HG Sbjct: 68 KGYDCPNLKRVLADPSITKIMHFARFDVAILQHALGITVSPVVCTKIAARLVRTFTDRHG 127 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L +++LG+ +SK QQ+SDW A +L EQL YAASDV++LHAL + + L R GR + Sbjct: 128 LAALCRDMLGVELSKQQQTSDWGAKELKPEQLAYAASDVLYLHALWDKMSALLDREGRRE 187 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA +C +FL RA LDLLG+E+ DIFSH Sbjct: 188 LAQACYDFLPARARLDLLGYEDPDIFSH 215 >gi|85705765|ref|ZP_01036862.1| exonuclease, putative [Roseovarius sp. 217] gi|85669755|gb|EAQ24619.1| exonuclease, putative [Roseovarius sp. 217] Length = 203 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 105/202 (51%), Positives = 138/202 (68%), Gaps = 2/202 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC+VQLS GDG ++++A GQ +AP Sbjct: 4 HLYQNDLPDGLDLG--SVVAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQVAKGQTSAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL +L D K+FH+GRFDIA + FG PV+CTKIAS+L RTYT++HGLK L+ Sbjct: 62 NLERLLTDPNVLKLFHFGRFDIAAMHNAFGALAAPVYCTKIASKLIRTYTDRHGLKYLLQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ELL I+ISK QQSSDW A+ L+ QL YAASDV++LH LR + +L R R LA +C Sbjct: 122 ELLNIDISKQQQSSDWGAESLTSAQLDYAASDVLYLHRLRDELNTRLVREDRMGLAQACF 181 Query: 185 NFLMDRAELDLLGWENVDIFSH 206 +FL RA LDL GW +DIF+H Sbjct: 182 DFLPQRAVLDLAGWPEIDIFAH 203 >gi|220925751|ref|YP_002501053.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060] gi|219950358|gb|ACL60750.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060] Length = 204 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 113/205 (55%), Positives = 142/205 (69%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 R+H GD+P + AIAVDTETLGL P RDRLC+VQ+S GDG D+++I Sbjct: 2 PHRLHCGDLPDDYV--PGPAIAVDTETLGLEPHRDRLCVVQISHGDGEADVVQIPKIGPE 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L D KIFHY RFD+AVL++ GV PV+CTK+ASRL RTYT++HGLKD Sbjct: 60 PVVLKRVLTDPAVTKIFHYARFDLAVLYHRLGVMPGPVYCTKVASRLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLG+ +SK QQSSDW AD L+ Q+ YAASDV+HLHALR + L R R+D+A + Sbjct: 120 VRELLGVELSKQQQSSDWGADTLTPAQIDYAASDVLHLHALRAKLDAMLAREERTDMAEA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA LDLLGW+ VDI +HS Sbjct: 180 CFAFLPTRARLDLLGWDEVDILAHS 204 >gi|126463573|ref|YP_001044687.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029] gi|126105237|gb|ABN77915.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029] Length = 204 Score = 281 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 111/205 (54%), Positives = 146/205 (71%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H D+P A +A+DTET+GL PRRDRLC+VQLS GDG +++I GQ + Sbjct: 2 TIHLHRNDLPDGLALG--PVVAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA L FGVR PV+CTKIAS++ RT+T++HGLK Sbjct: 60 APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G+++SK QQ+SDW A +L+D Q YAASDV+HLH L+ + +L R GR +LA Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179 Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206 C +FL RAELDL+GW+ DIF H Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204 >gi|254450150|ref|ZP_05063587.1| 3'-5' exonuclease [Octadecabacter antarcticus 238] gi|198264556|gb|EDY88826.1| 3'-5' exonuclease [Octadecabacter antarcticus 238] Length = 203 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 108/204 (52%), Positives = 141/204 (69%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T +++ D+P V +A+D ET+GL P RDRLC+VQLS GDG +I++A GQ Sbjct: 2 TNHLYQNDLPDGLDLGAV--VAIDCETMGLNPHRDRLCLVQLSGGDGNCHLIQVAGGQTT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA + FG PV+CTKIAS+L RTYT++HGLK+ Sbjct: 60 APNLCKVLADPQVLKLFHFGRFDIAAMLNAFGTVTAPVYCTKIASKLIRTYTDRHGLKNL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L+E L ++ISK QQ SDW AD LS QL YAASDV++LH LR + +L R R+D+A + Sbjct: 120 LQEFLRVDISKFQQQSDWGADQLSKAQLDYAASDVLYLHKLRDELNIRLARELRTDMAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA+LDL GW DIFSH Sbjct: 180 CFDFLPMRAQLDLAGWPEQDIFSH 203 >gi|49473901|ref|YP_031943.1| ribonuclease d [Bartonella quintana str. Toulouse] gi|49239404|emb|CAF25742.1| Ribonuclease d [Bartonella quintana str. Toulouse] Length = 206 Score = 281 bits (719), Expect = 5e-74, Method: Composition-based stats. Identities = 131/207 (63%), Positives = 161/207 (77%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P +DA+AVDTETLGL P RDRLC+VQLS GDGT DII+IA GQ Sbjct: 1 MKEIRVHQGDLP-NLDNYQIDAVAVDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K+APNLV +L D+ KIFH+GRFD+A+L YTFGV VFCTKIAS+LTRTYT++HGLK Sbjct: 60 KSAPNLVKLLKDKAITKIFHFGRFDLAILAYTFGVMPDVVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+A+ LS Q++YAASDV++LH LR F E+L+R R ++A Sbjct: 120 EICCELLNVNISKQQQSSDWAAEILSRAQIEYAASDVLYLHRLRDIFEERLKREERENVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW VDIF+HS Sbjct: 180 KACFQFLPMRAKLDLLGWSEVDIFAHS 206 >gi|77464733|ref|YP_354237.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1] gi|77389151|gb|ABA80336.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1] Length = 204 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 110/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H D+P +A+DTET+GL PRRDRLC+VQLS GDG +++I GQ + Sbjct: 2 TIHLHRNDLPDGLVLG--PVVAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA L FGVR PV+CTKIAS++ RT+T++HGLK Sbjct: 60 APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G+++SK QQ+SDW A +L+D Q YAASDV+HLH L+ + +L R GR +LA Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179 Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206 C +FL RAELDL+GW+ DIF H Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204 >gi|73667429|ref|YP_303445.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] gi|72394570|gb|AAZ68847.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] Length = 216 Score = 280 bits (718), Expect = 6e-74, Method: Composition-based stats. Identities = 110/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + VH+ D+P + DA+A+DTET+GL+ RRDRLC+VQL+ G V +++ + G Sbjct: 14 PVFVHDCDLPNGL--NFEDAVAIDTETMGLVCRRDRLCLVQLADSSGNVHLVKFS-GNYQ 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+ RFDIAV+ Y G+ P +CTKIAS+L RTYT+ HGLK+ Sbjct: 71 APNLVSVLSDPNIIKIFHFARFDIAVMRYYLGMWANPCYCTKIASKLVRTYTDHHGLKEL 130 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELLG+ ++K QQSSDW + L+ EQL YAASDV++LHAL+ + LQR + +LA + Sbjct: 131 CYELLGVKLNKMQQSSDWGRESLTSEQLNYAASDVIYLHALKSKLDAMLQRENKRELAAA 190 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGWENVDIFSHS Sbjct: 191 CFKFLQTRAQLDLLGWENVDIFSHS 215 >gi|329888476|ref|ZP_08267074.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC 11568] gi|328847032|gb|EGF96594.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC 11568] Length = 204 Score = 280 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 108/205 (52%), Positives = 142/205 (69%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ HEGD+P +A+D+ET+GL RRD LC+VQLS GDG ++R+ + Sbjct: 2 TVYFHEGDLPDGLDLG--PQVAIDSETMGLRFRRDPLCVVQLSSGDGNAHVVRLNRPAYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +L D K KIFH+GRFDI + GV RPV+CTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKRLLTDPKVLKIFHFGRFDIGMFDLHLGVETRPVYCTKIASKLARTYTDRHGLKDV 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 KEL G+++SKAQQSSDW A +LS QL YAASDV++LHA+ + E L R GR +LA + Sbjct: 120 AKELAGVDMSKAQQSSDWGAAELSQAQLDYAASDVLYLHAIMNRLNEMLVREGRMELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL R+ LDL GW+ +DIF+H+ Sbjct: 180 CFDFLPVRSRLDLAGWDEIDIFAHA 204 >gi|121602332|ref|YP_989471.1| 3'-5' exonuclease domain-containing protein [Bartonella bacilliformis KC583] gi|120614509|gb|ABM45110.1| 3'-5' exonuclease domain protein [Bartonella bacilliformis KC583] Length = 206 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 127/207 (61%), Positives = 160/207 (77%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P VDA+A+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ Sbjct: 1 MIDIRVHQGDLP-NLDNYCVDAVAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNLV +L D+ KIFH+GRFD+A+L +TFG+ VFCTKIAS+LTRTYT++HGLK Sbjct: 60 NSAPNLVKLLADKAITKIFHFGRFDLAILAHTFGIMPDAVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+A+ LS Q++YAASDV++LH L+ F E+L+R R D+A Sbjct: 120 EICSELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKSVFEERLKREEREDVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW +DIF+HS Sbjct: 180 KACFQFLPVRAKLDLLGWPEIDIFAHS 206 >gi|259417301|ref|ZP_05741220.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B] gi|259346207|gb|EEW58021.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B] Length = 204 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 110/207 (53%), Positives = 142/207 (68%), Gaps = 3/207 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M T +++ D+P +A+D ET+GL P RDRLC+VQ+S GDG +++I+ Q Sbjct: 1 MAT-HLYQNDLPDSVDLG--PVVAIDCETMGLNPHRDRLCVVQMSGGDGDAHLVQISKDQ 57 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 APNL ML + K+FHYGRFDIA L++ FG PV+CTKIASRL RTYT++HGLK Sbjct: 58 TEAPNLTSMLTNPDVLKLFHYGRFDIAALYHRFGALTAPVYCTKIASRLVRTYTDRHGLK 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++LLG +ISK QQ SDW AD L+ Q+ YAASDV+HLH LR +L R GRSDLA Sbjct: 118 NLTQDLLGQDISKQQQMSDWGADTLTRAQMDYAASDVLHLHRLRGALDLRLAREGRSDLA 177 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LDL GW + DIF+HS Sbjct: 178 QACFDFLPTRARLDLAGWPDTDIFAHS 204 >gi|85709987|ref|ZP_01041052.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1] gi|85688697|gb|EAQ28701.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1] Length = 215 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 106/205 (51%), Positives = 140/205 (68%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ HE D+PA +AVDTET+GL+ RDRLC+VQ+S G G ++R + G Sbjct: 6 TVHFHEEDLPAGV-LEGTGPLAVDTETMGLITHRDRLCVVQISDGSGDEHLVRFSPGSDY 64 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L DE R K++H+ RFD+A + Y GV PVFCTKIAS+L RTYT++HGLK+ Sbjct: 65 EAPNLSAILADESRVKLYHFARFDLAAIQYYLGVVAAPVFCTKIASKLVRTYTDRHGLKN 124 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ELLG +ISK QQSSDW +L+D Q +YAASDV +LH LR + +L+R GR ++A Sbjct: 125 LTDELLGESISKQQQSSDWGGPELNDAQREYAASDVRYLHRLRDELIVRLEREGRMEIAQ 184 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RA LD+ GW+ DIFSH Sbjct: 185 ACFDFLPTRAALDIAGWDGRDIFSH 209 >gi|240849913|ref|YP_002971302.1| 3'-5' exonuclease [Bartonella grahamii as4aup] gi|240267036|gb|ACS50624.1| 3'-5' exonuclease [Bartonella grahamii as4aup] Length = 206 Score = 279 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 126/207 (60%), Positives = 159/207 (76%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P DAIA+DTETLGL P RDRLC+VQLS GDGT D+I+I+ GQ Sbjct: 1 MAEIRVHQGDLP-NLDNYKTDAIAIDTETLGLQPHRDRLCVVQLSSGDGTADVIQISKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K+APNLV +L D KIFH+GRFD+A+L +TFGV +FCTKIAS+LTRTYT++HGLK Sbjct: 60 KSAPNLVKLLGDNAVIKIFHFGRFDLAILAHTFGVMPEAIFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+A+ LS Q++YAASDV++LH L++ F E+L+R R +A Sbjct: 120 EICNELLNVNISKQQQSSDWAAETLSQAQIEYAASDVLYLHRLKVIFEERLRREERESVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA+LDLLGW VDIF+HS Sbjct: 180 KACFQFLPMRAKLDLLGWAEVDIFAHS 206 >gi|221640647|ref|YP_002526909.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131] gi|221161428|gb|ACM02408.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131] Length = 204 Score = 279 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 110/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H D+P +A+DTET+GL PRRDRLC+VQLS GDG +++I GQ + Sbjct: 2 TIHLHRSDLPDGLVLG--PVVAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA L FGVR PV+CTKIAS++ RT+T++HGLK Sbjct: 60 APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G+++SK QQ+SDW A +L+D Q YAASDV+HLH L+ + +L R GR +LA Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179 Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206 C +FL RAELDL+GW+ DIF H Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204 >gi|332559626|ref|ZP_08413948.1| ribonuclease D [Rhodobacter sphaeroides WS8N] gi|332277338|gb|EGJ22653.1| ribonuclease D [Rhodobacter sphaeroides WS8N] Length = 204 Score = 279 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 110/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H D+P +A+DTET+GL PRRDRLC+VQLS GDG +++I GQ + Sbjct: 2 TIHLHRNDLPDGLVLG--PVVAIDTETMGLDPRRDRLCVVQLSAGDGDAHLLQIERGQTS 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA L FGVR PV+CTKIAS++ RT+T++HGLK Sbjct: 60 APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G+++SK QQ+SDW A +L+D Q YAASDV+HLH L+ + +L R GR +LA Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179 Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206 C +FL RAELDL+GW+ DIF H Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204 >gi|315497170|ref|YP_004085974.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48] gi|315415182|gb|ADU11823.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48] Length = 206 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 111/205 (54%), Positives = 142/205 (69%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI HEGD+P V +A+D+ET+GL RD LC+VQLS GDG ++R+ + Sbjct: 2 TIHYHEGDLPNGLNLGAV--VAIDSETMGLRFGRDDLCVVQLSAGDGDAHVVRLNRPAYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +L DEK K+FH+GRFDI + GV PV+CTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKALLTDEKVLKLFHFGRFDIGMFLLHLGVVTAPVYCTKIASKLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELL ++ISKAQQSSDW A L+ EQL YAASDV+HLH LR + L R GR++LA Sbjct: 120 VRELLSVDISKAQQSSDWGAQTLTPEQLAYAASDVLHLHTLREKLDTMLAREGRTELAQG 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL R +LDL GWE+ DIF+HS Sbjct: 180 CFDFLPHRVKLDLAGWEDTDIFAHS 204 >gi|209542515|ref|YP_002274744.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|209530192|gb|ACI50129.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5] Length = 210 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 103/205 (50%), Positives = 142/205 (69%), Gaps = 3/205 (1%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +I +H GD+ + + +IAVDTE +GL P RDRLC+VQ+S GDG+ +++I G Sbjct: 7 PSILLHRGDLADDVV--FHGSIAVDTEAMGLNPHRDRLCLVQISAGDGSAHLVQILPGTP 64 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + PNL ++ D K+ H+ RFD+A+L ++ GV V PV CTKIAS+L RT+T +HGL Sbjct: 65 S-PNLARLMADPSITKLMHFARFDVAILQHSLGVTVAPVICTKIASKLVRTFTERHGLAQ 123 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +ELLG+++SK QQ+SDW A +L+ EQ YAASDV+HLHAL + L R GR DLA Sbjct: 124 LCRELLGVDLSKQQQTSDWGAPELTPEQKAYAASDVLHLHALWTKLEALLHREGRRDLAQ 183 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RA LDLLG+E+ DIF+H Sbjct: 184 ACYDFLPTRARLDLLGYEDPDIFAH 208 >gi|49475064|ref|YP_033105.1| ribonuclease d [Bartonella henselae str. Houston-1] gi|49237869|emb|CAF27065.1| Ribonuclease d [Bartonella henselae str. Houston-1] Length = 206 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 128/207 (61%), Positives = 159/207 (76%), Gaps = 1/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT IRVH+GD+P +DA+AVDTETLGL P RDRLC+VQLS GDGT D+I+IA GQ Sbjct: 1 MTEIRVHQGDLP-NLDNYRIDAVAVDTETLGLQPHRDRLCVVQLSSGDGTADVIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 K+APNLV +L D KIFH+GRFD+A+L +TFGV VFCTKIAS+LTRTYT++HGLK Sbjct: 60 KSAPNLVRLLSDRDITKIFHFGRFDLAILAHTFGVMPDVVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+A+ LS Q++YAASDV++LH L+ F E+L+R R +A Sbjct: 120 EICGELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKDIFEERLKREERESVA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C FL RA LDLLGW +DIF+HS Sbjct: 180 KACFQFLPMRANLDLLGWSEIDIFAHS 206 >gi|300021932|ref|YP_003754543.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888] gi|299523753|gb|ADJ22222.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888] Length = 205 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 114/205 (55%), Positives = 148/205 (72%), Gaps = 3/205 (1%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T I++H+GD+P + + IA+DTET+GL P RDRLC+VQLS GDGT +++ Sbjct: 4 TKIKLHKGDLPTGLT--FPNGIAIDTETMGLNPHRDRLCLVQLSGGDGTAHLVKFDGKSY 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +APNL +L D K KIFH+ RFD+AVL + GV P++CTKIAS+L RTYT++HGLKD Sbjct: 62 DAPNLKALLADPKSLKIFHFARFDVAVLEHYLGVVTSPIYCTKIASKLARTYTDRHGLKD 121 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + E+LGI ISK QQSSDW A +LSD Q YAA+DV+HLHAL+ + E L R GR DLA Sbjct: 122 LVGEILGIEISKQQQSSDWGAAELSDSQRSYAANDVLHLHALKTRLDEMLARTGRQDLAK 181 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 + FL RA+LDLLG+E+ DIF+H Sbjct: 182 AAFGFLPIRAKLDLLGFED-DIFAH 205 >gi|126734481|ref|ZP_01750228.1| exonuclease, putative [Roseobacter sp. CCS2] gi|126717347|gb|EBA14211.1| exonuclease, putative [Roseobacter sp. CCS2] Length = 203 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 103/202 (50%), Positives = 141/202 (69%), Gaps = 2/202 (0%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +++ D+P +A+D ET+GL P RDRLC++Q+S GDG ++++ GQ AP Sbjct: 4 HLYQNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCLIQMSGGDGDCHLVQVTPGQTAAP 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 NL ML + K+FH+GRFDIA L FG PV+CTKIAS+L RTYT++HGLK L+ Sbjct: 62 NLCAMLENPDVLKLFHFGRFDIAALLNAFGALTAPVYCTKIASKLVRTYTDRHGLKTLLQ 121 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 +++GI+ISK QQ SDW A +L+D QL YAASDV++LH L+ +F L R R+D+A SC Sbjct: 122 DMVGIDISKHQQQSDWGAPNLTDAQLDYAASDVLYLHQLKEKFDVLLAREHRADVAQSCF 181 Query: 185 NFLMDRAELDLLGWENVDIFSH 206 +FL RA+LDL GW ++DIFSH Sbjct: 182 DFLPTRAKLDLAGWPDIDIFSH 203 >gi|146278808|ref|YP_001168967.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025] gi|145557049|gb|ABP71662.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025] Length = 204 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 111/205 (54%), Positives = 145/205 (70%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +H D+P V +A+DTET+GL PRRDRLC+VQLS GDG +++I GQ Sbjct: 2 TIHLHRNDLPDGLDLGRV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTR 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D + K+FH+GRFDIA L FGVR PV+CTKIAS++ RT+T++HGLK Sbjct: 60 APNLERLLTDPQVLKLFHFGRFDIAALQRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L EL+G+++SK QQ+SDW A +L+D Q YAASDV+HLH L+ + +L R GR +LA Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKEELEARLLREGRMELAQR 179 Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206 C +FL RAELDL+GW+ DIF H Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204 >gi|296115075|ref|ZP_06833717.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769] gi|295978412|gb|EFG85148.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769] Length = 215 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 106/207 (51%), Positives = 144/207 (69%), Gaps = 4/207 (1%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TI H GD+P + + A+AVDTET+GL P RDRLC+VQLS GDG ++++ AG Sbjct: 8 DTIHFHRGDLPHDVV--FSGAVAVDTETMGLNPHRDRLCLVQLSDGDGHAHLVQVPAGAT 65 Query: 62 --NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + PN++ +L D K+ H+ RFD+A+L YTFG+ V P CTKIAS+L RTYT +HGL Sbjct: 66 AADFPNMLAVLTDPSVTKLMHFARFDVAILQYTFGITVAPCICTKIASKLVRTYTERHGL 125 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 +ELLG+ +SK QQSSDW A DL+ EQ+ YAASDV++LHAL + L R GR +L Sbjct: 126 AHLCRELLGVELSKQQQSSDWGAPDLTPEQMTYAASDVLYLHALWARLEALLVREGRREL 185 Query: 180 ATSCCNFLMDRAELDLLGWENVDIFSH 206 A +C +F+ RA LD+LG+E+ D+F+H Sbjct: 186 AQACYDFMPTRARLDILGYEDPDLFAH 212 >gi|162147898|ref|YP_001602359.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] gi|161786475|emb|CAP56057.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] Length = 210 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 103/205 (50%), Positives = 142/205 (69%), Gaps = 3/205 (1%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +I +H GD+ + + +IAVDTE +GL P RDRLC+VQ+S GDG+ +++I G Sbjct: 7 PSILLHRGDLADDVV--FHGSIAVDTEAMGLNPHRDRLCLVQISAGDGSAHLVQILPGTP 64 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + PNL ++ D K+ H+ RFD+A+L ++ GV V PV CTKIAS+L RT+T +HGL Sbjct: 65 S-PNLARLMADPSITKLMHFARFDVAILQHSLGVTVAPVICTKIASKLVRTFTERHGLAQ 123 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +ELLG+++SK QQ+SDW A +L+ EQ YAASDV+HLHAL + L R GR DLA Sbjct: 124 LCRELLGVDLSKQQQTSDWGAPELTPEQKAYAASDVLHLHALWTKLEVLLHREGRRDLAQ 183 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RA LDLLG+E+ DIF+H Sbjct: 184 ACYDFLPTRARLDLLGYEDPDIFAH 208 >gi|304392222|ref|ZP_07374164.1| 3'-5' exonuclease [Ahrensia sp. R2A130] gi|303296451|gb|EFL90809.1| 3'-5' exonuclease [Ahrensia sp. R2A130] Length = 211 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 120/205 (58%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR+H+ D+P + Y D++A+DTETLGL PRRDRLC+VQLSPGDGT D+++I GQ + Sbjct: 9 TIRLHKNDLPD--LSNYSDSVAIDTETLGLRPRRDRLCVVQLSPGDGTADVVQIEKGQTS 66 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APN+ +LVD +KI+HYGRFDIAVL++ FG FCTKIASRLTRTYT++HGLK+ Sbjct: 67 APNIEKLLVDTNVQKIYHYGRFDIAVLYHAFGALSDNNFCTKIASRLTRTYTDRHGLKNL 126 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 EL+G+++SK QQSSDW+A++L+ Q YAASDV+HLHALR ++L R R LA Sbjct: 127 THELIGVDLSKVQQSSDWAAEELTKAQQAYAASDVLHLHALRDALLKRLAREDRQHLADE 186 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL R LDL GWE+ DIF+HS Sbjct: 187 CFKFLPTRCLLDLAGWEDTDIFAHS 211 >gi|254419186|ref|ZP_05032910.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3] gi|196185363|gb|EDX80339.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3] Length = 204 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 105/205 (51%), Positives = 143/205 (69%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ +HEGD+P + +A+D+ET+GL RRD LC+VQLS GDG ++R+ + Sbjct: 2 TVYLHEGDLPDDLDLG--PDVAIDSETMGLRFRRDPLCVVQLSAGDGNAHVVRLNRPGYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +L D KIFH+GRFDI + GV RPV+CTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKRLLTDPAVTKIFHFGRFDIGMFLLHLGVETRPVYCTKIASKLARTYTDRHGLKDV 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E +G+++SKAQQSSDW A +L+ QL YAASDV++LHA R + L R GR++LA Sbjct: 120 VRETVGVDLSKAQQSSDWGAAELTQAQLDYAASDVLYLHAARAKLDLMLAREGRAELAAQ 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL R+ LDL GW+ +DIF+HS Sbjct: 180 CFDFLPTRSALDLAGWDEIDIFAHS 204 >gi|94495607|ref|ZP_01302187.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58] gi|94424995|gb|EAT10016.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58] Length = 205 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 109/205 (53%), Positives = 140/205 (68%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ HE D+P A IAVDTET+GL+ RDRLC+VQ+S G G ++R G Sbjct: 2 TVHFHEEDLPVGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGKGDEHLVRFNPGSDY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D +R K++H+GRFDIA L + G+ PV+CTKIASRL RTYT++HGLK+ Sbjct: 60 AAPNLKAVLADPERLKLYHFGRFDIAALRHYLGIVAAPVYCTKIASRLVRTYTDRHGLKE 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +ISK QQSSDW LSD Q YAASDV LH L+ + ++L+R GR +LA Sbjct: 120 LVRELLGQDISKQQQSSDWGGPVLSDAQKDYAASDVRFLHQLKAELDKRLEREGRMELAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RAELDL GW DIF+H Sbjct: 180 ACFDFLPHRAELDLAGWPETDIFAH 204 >gi|260577298|ref|ZP_05845271.1| 3'-5' exonuclease [Rhodobacter sp. SW2] gi|259020479|gb|EEW23802.1| 3'-5' exonuclease [Rhodobacter sp. SW2] Length = 204 Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 106/204 (51%), Positives = 143/204 (70%), Gaps = 3/204 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +++GD+PA +A+DTET+GL PRRDRLC+VQLS GDG +++IA GQ +A Sbjct: 3 VHLYKGDLPAGLNLG--PVVAIDTETMGLDPRRDRLCLVQLSSGDGNAHLVQIARGQTSA 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D K+FH+GRFDIA + FGV PV+CTKIA++L RT+T++HGLK L Sbjct: 61 PNLEKLLTDPSVLKLFHFGRFDIAAMKAAFGVVTAPVWCTKIAAKLVRTFTDRHGLKYLL 120 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +EL+G+++SK QQ+SDW ++ LSD Q YAASDV++LH L + L R R LA C Sbjct: 121 QELVGVDVSKQQQTSDWGSETLSDAQKDYAASDVLYLHRLMAELERCLIRENRLALAQRC 180 Query: 184 CNFLMDRAELDLLGWENV-DIFSH 206 +FL RAELDL+GW+ DIF H Sbjct: 181 FDFLPTRAELDLMGWDEPNDIFHH 204 >gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510] gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510] Length = 208 Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 106/207 (51%), Positives = 143/207 (69%), Gaps = 3/207 (1%) Query: 3 TIRVHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I +H+GD+P + +A+DTET+GL P RDRLC+VQLS GDG V +++ G Sbjct: 2 PIDLHDGDLPDGLDLAAGARDNCVAIDTETMGLNPHRDRLCLVQLSAGDGAVHLVQFRPG 61 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + APNL +L D K+FH+ RFD+AV+ GV RPV+CTK+AS+L RT+T++HGL Sbjct: 62 RYEAPNLKRLLTDPGVTKLFHFARFDVAVMKAYLGVDCRPVYCTKVASKLVRTFTDRHGL 121 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 KD K+LLG+ ISK QQSSDW A +L+ +Q++YAASDV+HLH L+ + L R GR+ L Sbjct: 122 KDLCKDLLGVEISKQQQSSDWGAPELTTDQMKYAASDVLHLHDLKAKLDVMLAREGRTHL 181 Query: 180 ATSCCNFLMDRAELDLLGWENVDIFSH 206 A +C +FL R ELDL GWE DI +H Sbjct: 182 AQACFDFLPARGELDLGGWETPDILAH 208 >gi|307943000|ref|ZP_07658345.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4] gi|307773796|gb|EFO33012.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4] Length = 206 Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats. Identities = 118/205 (57%), Positives = 147/205 (71%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TIR H+ D+ DA+AVDTETLGL RDRLC+VQLSPGDG+ D+++I G Sbjct: 2 TIRFHKNDLSDLTHYVSCDAVAVDTETLGLNLLRDRLCVVQLSPGDGSADVVQIEKGMTA 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D R KIFHY RFD+A+L G+ V PV+CTKIAS+L RTYT++HGLKD Sbjct: 62 APNLTALLSDPARTKIFHYARFDVAILRQNLGIHVDPVWCTKIASKLCRTYTDRHGLKDI 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG++ISK QQSSDW+A+ L+D QL YAASDV+HLHAL+ + L+R R+ LA + Sbjct: 122 TRELLGVDISKQQQSSDWAAEQLTDAQLAYAASDVLHLHALKEKLEFMLRREERTHLAEA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 FL RAELDL GW DIF+HS Sbjct: 182 SFGFLPTRAELDLKGWGETDIFAHS 206 >gi|114568663|ref|YP_755343.1| 3'-5' exonuclease [Maricaulis maris MCS10] gi|114339125|gb|ABI64405.1| 3'-5' exonuclease [Maricaulis maris MCS10] Length = 204 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 109/205 (53%), Positives = 143/205 (69%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ H+GD+PA+ +AVDTETLGL RD LC+VQLS GDG ++++ + Sbjct: 2 TVHYHKGDLPADIDLG--PIVAVDTETLGLSLTRDMLCVVQLSAGDGDAHVVQMNRADYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +L D EKI H+ RFD+A++ GV + PVFCTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKRVLADPAVEKILHFARFDVAMVDKYLGVTMAPVFCTKIASKLVRTYTDRHGLKDV 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G ++K QQSSDW AD+LS QL YAASDV+HLH LR + L+R GR+DLA + Sbjct: 120 TRELVGAEMNKQQQSSDWGADELSPAQLDYAASDVLHLHKLREKLGMMLEREGRTDLAKA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA+LDL GW +DIF+HS Sbjct: 180 CFDFLPTRAKLDLAGWPEIDIFAHS 204 >gi|83950822|ref|ZP_00959555.1| exonuclease, putative [Roseovarius nubinhibens ISM] gi|83838721|gb|EAP78017.1| exonuclease, putative [Roseovarius nubinhibens ISM] Length = 203 Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 103/204 (50%), Positives = 145/204 (71%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T V++GD+P + +A+D ET+GL+P RDRLC+VQLS GDG ++++A GQ+ Sbjct: 2 TNTVYKGDLPDDLDLG--PIVAIDCETMGLLPHRDRLCVVQLSGGDGHAHLVQVAKGQRT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L + K+FH+GRFDIA + FG PV+CTKIAS+L RTYT++HGL++ Sbjct: 60 APNLVRLLENPDVLKLFHFGRFDIAAMLNAFGAVAAPVYCTKIASKLVRTYTDRHGLRNL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L++LLG++ISK QQSSDW +LS Q+ YAASDV++LH LR +L R R ++A + Sbjct: 120 LQDLLGVDISKHQQSSDWGRAELSTAQIDYAASDVLYLHRLREALNVRLLREERMEMAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA+LDL GW + D+F+H Sbjct: 180 CFDFLPMRAQLDLAGWPDDDLFAH 203 >gi|312114054|ref|YP_004011650.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100] gi|311219183|gb|ADP70551.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100] Length = 204 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 109/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI VH D+P + + ++A+DTETLGL P RDRLC+VQLS GDG +++ G + Sbjct: 2 TITVHLNDLPPDID--FGASVAIDTETLGLKPHRDRLCVVQLSAGDGNAHLVQFEKGHYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +LV+ KIFH+GRFDIAV+ GV+ PV+CTKIA++L RT+T +HGLKD Sbjct: 60 APNLTALLVNPAVLKIFHFGRFDIAVMQQYLGVKTGPVYCTKIAAKLVRTFTERHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG+ +SK QQ+SDW L+ EQL YAASDV+HLHAL+ + L R GR++LA + Sbjct: 120 CRELLGVELSKQQQTSDWGQAKLTPEQLSYAASDVLHLHALKEKLDALLAREGRTELAAA 179 Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206 C FL RAELDL GW ++ D+F+H Sbjct: 180 CFGFLPYRAELDLKGWHDDADVFNH 204 >gi|307293724|ref|ZP_07573568.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1] gi|306879875|gb|EFN11092.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1] Length = 205 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 108/205 (52%), Positives = 141/205 (68%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ HE D+P A IAVDTET+GL+ RDRLC+VQ+S G G ++R G Sbjct: 2 TVHFHEEDLPQGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGQGDEHLVRFNPGSDY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D R K++H+GRFDIA + + G+ PV+CTKIASRL RTYT++HGLK+ Sbjct: 60 AAPNLRAVLADPARLKLYHFGRFDIAAIRHYMGIVAAPVYCTKIASRLVRTYTDRHGLKE 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +SK QQSSDW LSD Q +YAASDV +LHAL+ + ++L R GR +LA Sbjct: 120 LVRELLGQELSKVQQSSDWGGPVLSDPQKEYAASDVRYLHALKAELDKRLVREGRMELAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RAELDL GW +DIF+H Sbjct: 180 ACFDFLPHRAELDLAGWPEIDIFAH 204 >gi|332187924|ref|ZP_08389657.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17] gi|332012085|gb|EGI54157.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17] Length = 206 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 112/206 (54%), Positives = 150/206 (72%), Gaps = 2/206 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ +HE DIPA+ A AIAVDTET+GL+ RDRLC+VQLS G ++R + Sbjct: 2 TVHLHEEDIPADLFAPGA-AIAVDTETMGLITPRDRLCVVQLSDGGPDEHLVRFSPDSDY 60 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D R K++H+GRFDIA + + GV PV+CTKIASRL RTYT++HGLK+ Sbjct: 61 AAPNLRALLADPARLKLYHFGRFDIAAIRHYLGVVAAPVYCTKIASRLIRTYTDRHGLKE 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLGI +SKAQQSSDW A +LSD Q +YAASDV +LH ++++ ++L+R GR +LA Sbjct: 121 LVRELLGIELSKAQQSSDWGAPELSDAQREYAASDVRYLHRMKVELDKRLEREGRMELAQ 180 Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RAELDL GW +DIF+H+ Sbjct: 181 ACFDFLPARAELDLAGWPEIDIFAHA 206 >gi|294013112|ref|YP_003546572.1| ribonuclease D [Sphingobium japonicum UT26S] gi|292676442|dbj|BAI97960.1| ribonuclease D [Sphingobium japonicum UT26S] Length = 205 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 109/205 (53%), Positives = 140/205 (68%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ HE D+P A IAVDTET+GL+ RDRLC+VQ+S G G ++R G Sbjct: 2 TVHFHEEDLPLGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGQGDEHLVRFNPGSDY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL L D R K++H+GRFDIA + + GV PV+CTKIASRL RTYT++HGLK+ Sbjct: 60 AAPNLRAALADPARLKLYHFGRFDIAAIRHYLGVVAAPVYCTKIASRLVRTYTDRHGLKE 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +SK QQSSDW LSD Q +YAASDV +LHAL+ + ++L R GR +LA Sbjct: 120 LVRELLGQELSKVQQSSDWGGPVLSDAQKEYAASDVRYLHALKAELDKRLAREGRMELAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RAELDL GW +DIF+H Sbjct: 180 ACFDFLPHRAELDLAGWPEIDIFAH 204 >gi|197103637|ref|YP_002129014.1| ribonuclease D [Phenylobacterium zucineum HLK1] gi|196477057|gb|ACG76585.1| ribonuclease D [Phenylobacterium zucineum HLK1] Length = 205 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 115/207 (55%), Positives = 150/207 (72%), Gaps = 2/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MTT VHEGD+PA+ A ++A+D+ET+GL RD LC+VQLS G G ++++ Sbjct: 1 MTTF-VHEGDLPADVLA-SASSVAIDSETMGLRLGRDPLCVVQLSDGGGDAHLVKLDRTT 58 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNL +L D KIFH+GRFDIA+ + GV PV+CTKIAS++ RTYT++HGLK Sbjct: 59 YDAPNLKRLLTDPAVTKIFHFGRFDIAMFWLHLGVLTAPVYCTKIASKIARTYTDRHGLK 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D KELLG+++SKAQQSSDW A LSDEQ+ YAASDV+HLHAL+ + + L R GR LA Sbjct: 119 DISKELLGVDMSKAQQSSDWGAGKLSDEQVAYAASDVLHLHALKDRLQQMLVREGRDSLA 178 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA LD+ GWE+VDIF+HS Sbjct: 179 QACFDFLPHRAVLDVAGWEDVDIFAHS 205 >gi|326388611|ref|ZP_08210204.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370] gi|326206862|gb|EGD57686.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370] Length = 205 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 106/204 (51%), Positives = 142/204 (69%), Gaps = 3/204 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-QKN 62 + +HE D+PA+ A +AVDTET+GL+ RDRLC+VQ+S G G ++R A G + Sbjct: 3 VYLHEEDLPADVLA--PGIVAVDTETMGLVTTRDRLCVVQISDGKGDEHLVRFAPGSTYD 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D +R K+FH+ RFD+A + Y GV PVFCTKIAS+L RTYT++HGLK+ Sbjct: 61 APNLKAVLADPERLKLFHFARFDLAAIHYYLGVMATPVFCTKIASKLVRTYTDRHGLKEL 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++EL G ISK QQSSDW +LSD QL+YAASDV +LH ++L R GR+++A + Sbjct: 121 VRELAGKEISKQQQSSDWGGANLSDAQLEYAASDVRYLHTCHAVLVDRLAREGRAEIAQA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA LD+ GW + DIFSH Sbjct: 181 CFDFLPTRALLDIAGWADRDIFSH 204 >gi|254292595|ref|YP_003058618.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814] gi|254041126|gb|ACT57921.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814] Length = 204 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 104/204 (50%), Positives = 141/204 (69%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I+ HEGD+P + +AVDTE +GL RD+LC+VQLS G G ++R+ + Sbjct: 3 IKYHEGDLPNGLKLGAI--LAVDTEAMGLEFHRDQLCVVQLSDGTGDEHVVRLDRKTFDC 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL ++ D K KIFH+ RFD+A++ G+ P+FCTKIAS+L RTYT++HGLKD Sbjct: 61 PNLKALMSDTKVLKIFHFARFDVAMMKKWLGIECAPIFCTKIASKLARTYTDRHGLKDVS 120 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +EL+G ++SKAQQSSDW AD LS+ QL YAASDV++LH +R + L+R GR +LA +C Sbjct: 121 RELVGADMSKAQQSSDWGADSLSEAQLAYAASDVLYLHEIREKLILMLEREGRMELAQAC 180 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 +FL RA+LDL GW DIF+HS Sbjct: 181 FDFLPKRADLDLAGWPETDIFAHS 204 >gi|88608093|ref|YP_506413.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str. Miyayama] gi|88600262|gb|ABD45730.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str. Miyayama] Length = 206 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 109/206 (52%), Positives = 143/206 (69%), Gaps = 2/206 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M ++EGD+PA+ A DAIA+DTE++GL+ RRDRLC+VQLS GDGT ++R Sbjct: 1 MNKYYIYEGDVPADFA--PSDAIAIDTESMGLVNRRDRLCLVQLSTGDGTAHLVRFNGTD 58 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +AP L +LVD KIFH+ RFDIA+L + GV +CTKIASRL RTYT+ H LK Sbjct: 59 YSAPRLKSLLVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLK 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + +LLG+ ++K +QSSDW + L+ EQ+ YAASDV++LHA++ L+R R +LA Sbjct: 119 ELCLDLLGVRLNKGKQSSDWGSTSLTREQMSYAASDVLYLHAIKEALDVMLKREKRIELA 178 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C FL RAELDLLGWEN DIFSH Sbjct: 179 RACFQFLPYRAELDLLGWENQDIFSH 204 >gi|295691424|ref|YP_003595117.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756] gi|295433327|gb|ADG12499.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756] Length = 205 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 109/207 (52%), Positives = 141/207 (68%), Gaps = 2/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M VHEGD+P A IA+D+ET+GL RD LC+VQLS GDG ++R++ Sbjct: 1 MANF-VHEGDLPDGVFA-GASIIAIDSETMGLRLGRDPLCVVQLSSGDGDAHVVRLSRPD 58 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + PNL +L D K+FH+GRFDIA+ GV PV+CTKIAS+L RTYT++HGLK Sbjct: 59 YDCPNLKALLTDPAILKLFHFGRFDIAMFQLHLGVVTAPVYCTKIASKLARTYTDRHGLK 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D +ELLG+ +SKAQQSSDW + LS +Q+ YAASDV+HLH LR + L+R GR LA Sbjct: 119 DVTRELLGVELSKAQQSSDWGSASLSADQVAYAASDVLHLHGLRQKLNAMLEREGRMALA 178 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 + ++L RA LDL GWE+VDIF+HS Sbjct: 179 QAAFDYLPHRASLDLAGWEDVDIFAHS 205 >gi|83944937|ref|ZP_00957303.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633] gi|83851719|gb|EAP89574.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633] Length = 204 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 104/205 (50%), Positives = 138/205 (67%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI H GD+P +A+DTET GL RD LC+VQLS GDG I++ + Sbjct: 2 TIHFHRGDLPDGLDLG--KRVAIDTETQGLSLVRDGLCLVQLSAGDGEAHIVQPDRATYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +L D EK+ H+ RFD+A++ GV + PVFCTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKALLADTGVEKLLHFARFDLAIIERDLGVTMTPVFCTKIASKLVRTYTDRHGLKDV 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +E+ G+ +SK QQSSDW+A DLS+ QL YAASDV++LHA+ T L+R GR ++A + Sbjct: 120 CREIAGVELSKQQQSSDWAAQDLSEAQLNYAASDVLYLHAIADGLTAMLEREGRMEMARA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA LDL+GW+ DIF+HS Sbjct: 180 CFDFLPSRARLDLMGWDETDIFAHS 204 >gi|148555811|ref|YP_001263393.1| 3'-5' exonuclease [Sphingomonas wittichii RW1] gi|148501001|gb|ABQ69255.1| 3'-5' exonuclease [Sphingomonas wittichii RW1] Length = 205 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 107/205 (52%), Positives = 142/205 (69%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ +H+ D+PA+ +AVDTET+GL+ RDRLC+VQ+S G G ++R A G Sbjct: 2 TVHLHQEDLPADAL--GPGPVAVDTETMGLITPRDRLCLVQISDGRGDEHLVRFAPGSDY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L D R K++H+ RFD+A + + GV PV+CTK ASRL RTYT++HGLK+ Sbjct: 60 AAPNLRAVLADPARLKLYHFARFDLAAIRHYIGVMAAPVYCTKTASRLIRTYTDRHGLKE 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +SK QQSSDW A DLS+ Q YAASDV +LHA+R E+L R GR+ LA Sbjct: 120 LVRELLGQEVSKQQQSSDWGAPDLSEAQKDYAASDVRYLHAMRTILDERLAREGRTALAQ 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RAELDL GW +DIF+H Sbjct: 180 ACFDFLPARAELDLAGWPEIDIFAH 204 >gi|83591355|ref|YP_425107.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170] gi|83574269|gb|ABC20820.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170] Length = 206 Score = 274 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 108/205 (52%), Positives = 134/205 (65%), Gaps = 3/205 (1%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TI H GD+P+ + IAVDTET+GL P RDRLC+VQLS GD ++ + Sbjct: 5 PTIHYHRGDLPSGLT--FPQGIAVDTETMGLNPHRDRLCVVQLSGGDNIAHVVHLNR-DL 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 AP L +L D KI H+GRFDIA + + GV PV+CTKIAS+L RT T+ HGLK Sbjct: 62 QAPVLASLLGDPSVLKIMHFGRFDIASIHHGLGVLCEPVYCTKIASKLCRTNTDSHGLKA 121 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 K+LLG+++SK QQ+SDW A+ LS EQL YAASDV++LHAL+ + L R GR+ LA Sbjct: 122 LCKDLLGVDLSKHQQTSDWGAESLSPEQLTYAASDVLYLHALKARLDGLLAREGRTTLAE 181 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 C FL RA LDL GWE DIFSH Sbjct: 182 GCFRFLPTRALLDLAGWEEPDIFSH 206 >gi|241760851|ref|ZP_04758940.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753179|ref|YP_003226072.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283856222|ref|YP_162013.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4] gi|241374470|gb|EER63931.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552542|gb|ACV75488.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|283775217|gb|AAV88902.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4] Length = 209 Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 105/205 (51%), Positives = 141/205 (68%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 T+ HE D+P + + A+AVDTET+GL+ RDRLC+VQ+S G G ++R A Sbjct: 6 TVYFHEEDLPKDALSE--GAVAVDTETMGLITHRDRLCVVQISDGKGDQHLVRFAPDSDY 63 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +APNL +L D R KI+H+GRFDIA + Y GV PV+CTKIAS+L RTYT++HGLK+ Sbjct: 64 SAPNLKAVLSDPNRLKIYHFGRFDIAAILYYLGVMAAPVYCTKIASKLVRTYTDRHGLKE 123 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ELLG +ISK QQ SDW + LSD Q +YAASDV LH L+ + +L+R R +LA Sbjct: 124 LVRELLGQDISKQQQCSDWGGEKLSDAQREYAASDVRFLHGLKEKLDIRLKREKREELAQ 183 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RA+LD+ GW DIF+H Sbjct: 184 ACFDFLPTRAKLDIAGWSETDIFAH 208 >gi|114797270|ref|YP_758935.1| putative exonuclease [Hyphomonas neptunium ATCC 15444] gi|114737444|gb|ABI75569.1| putative exonuclease [Hyphomonas neptunium ATCC 15444] Length = 204 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 101/207 (48%), Positives = 141/207 (68%), Gaps = 3/207 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I +H+GD+P + IAVDTE +GL RD L +VQ+S GDGT ++++ Sbjct: 1 MNQITLHKGDLPEGLSLG--PVIAVDTEAMGLNAMRDNLTLVQVSSGDGTAHLVQLTR-D 57 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + PNL +L D K KIFH+ RFD+ ++ G+ P++CTKIASRL RTYT++HGLK Sbjct: 58 YDCPNLKALLTDPKVLKIFHFARFDVVMMKRWMGITCAPIWCTKIASRLARTYTDRHGLK 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D +E+ G+++SKAQQSSDW D L+D Q+QYAASDV++LH ++ L+R GR +LA Sbjct: 118 DVAREVAGVDMSKAQQSSDWGQDKLTDAQIQYAASDVLYLHQIKAGLEAMLEREGRLELA 177 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 +C +FL RA+LDL GW + DIF+HS Sbjct: 178 QACFDFLPIRADLDLAGWPDEDIFAHS 204 >gi|57239514|ref|YP_180650.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|58579496|ref|YP_197708.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|58617549|ref|YP_196748.1| putative ribonuclease D [Ehrlichia ruminantium str. Gardel] gi|57161593|emb|CAH58521.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden] gi|58417161|emb|CAI28274.1| Probable ribonuclease D [Ehrlichia ruminantium str. Gardel] gi|58418122|emb|CAI27326.1| Probable ribonuclease D [Ehrlichia ruminantium str. Welgevonden] Length = 205 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 104/205 (50%), Positives = 141/205 (68%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I VH+ D+P + + +AVDTET+GL+ RRDRLC+VQ+S +G V +++ + + Sbjct: 2 PIFVHDYDLPDGV--EFGNTVAVDTETMGLVCRRDRLCLVQMSGSNGNVHLVKFPSTEYQ 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 A NL +L D KIFH+ RFDI + Y G+ P +CTKIAS+L RTYT+ HGLK+ Sbjct: 60 ASNLKKILSDLSITKIFHFARFDITAIRYYLGIWAIPCYCTKIASKLARTYTDHHGLKEL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELLGI ++K QQSSDW + L+ EQL YAASDV+HLHAL+ + L+R + +LA S Sbjct: 120 CNELLGIKLNKVQQSSDWGKEVLTSEQLNYAASDVIHLHALKSKLDAMLERENKQELAKS 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL R +LDLLGW+NVDIFSH+ Sbjct: 180 CFDFLPTRVQLDLLGWDNVDIFSHA 204 >gi|329847152|ref|ZP_08262180.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19] gi|328842215|gb|EGF91784.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19] Length = 206 Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats. Identities = 111/205 (54%), Positives = 143/205 (69%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ HEGD+PA +IA+D+ET+GL RD LC+VQLS GDG ++R+ + Sbjct: 2 TVFYHEGDLPAGLDLG--KSIALDSETMGLRFGRDDLCVVQLSAGDGHAHVVRLNRPAYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +LVD K+FHYGRFDI + GV PV+CTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKALLVDPSVLKLFHYGRFDIGMFALHLGVDTSPVYCTKIASKLARTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G+++SKAQQSSDW A L+ EQL YAASDV+HLHAL+ + L R GRS LA + Sbjct: 120 SRELVGVDMSKAQQSSDWGAATLTPEQLAYAASDVLHLHALKDKLDAMLAREGRSALAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL R +LDL GWE+ DIF+HS Sbjct: 180 CFDFLPQRVKLDLAGWEDCDIFAHS 204 >gi|296282123|ref|ZP_06860121.1| 3'-5' exonuclease [Citromicrobium bathyomarinum JL354] Length = 205 Score = 274 bits (701), Expect = 6e-72, Method: Composition-based stats. Identities = 109/204 (53%), Positives = 143/204 (70%), Gaps = 3/204 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-N 62 + HE D+P A A+AVDTET+GL+ RRDRLC+VQ+S G G ++R + Sbjct: 3 VYFHEEDLPEGVLAE--GAVAVDTETMGLITRRDRLCLVQISDGKGDEHLVRFGVDSSFD 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D R K++H+GRFD+A + Y GV PVFCTKIAS+LTRTYT++HGLK Sbjct: 61 APNLKAVLADPARTKLYHFGRFDLAAIEYWLGVTAAPVFCTKIASKLTRTYTDRHGLKML 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + ELLG +ISK QQSSDW A ++D Q +YAASDV +LH LR F E+L R GR+++A + Sbjct: 121 VSELLGEDISKQQQSSDWGAPKINDAQREYAASDVRYLHRLRDIFEERLAREGRTEIAQA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA LD++GW + DIFSH Sbjct: 181 CFDFLPTRARLDIIGWPDTDIFSH 204 >gi|319406582|emb|CBI80224.1| Ribonuclease D [Bartonella sp. 1-1C] Length = 206 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 129/206 (62%), Positives = 160/206 (77%), Gaps = 1/206 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P VD+IA+DTETLGL P RDRLC+VQLSPGDGT DII+IA GQ Sbjct: 1 MAEIRVHQGDLP-NLDNYCVDSIAIDTETLGLQPHRDRLCVVQLSPGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNLV +L D+ KIFH+GRFD+A+L +TFGV VFCTK+AS+LTRTYT++HGLK Sbjct: 60 NSAPNLVTLLEDKTITKIFHFGRFDLAILAHTFGVMPDAVFCTKLASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+AD LS Q++YAASDV++LH L+ F E+L+R R D+A Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C FL RA+LDLLGW VDIF+H Sbjct: 180 KACFQFLPVRAKLDLLGWSEVDIFAH 205 >gi|85375259|ref|YP_459321.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594] gi|84788342|gb|ABC64524.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594] Length = 206 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 106/205 (51%), Positives = 140/205 (68%), Gaps = 2/205 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-N 62 + HE D+PA A +AVDTET+GL+ RRDRLCIVQ+S G ++R A Sbjct: 3 VHFHEEDLPAGVLAGDAP-LAVDTETMGLVTRRDRLCIVQISDGGEDEHLVRFAPDSDYA 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D R K++H+ RFD+A + + GV PVFCTKIAS+LTRTYT++HGLK+ Sbjct: 62 APNLKALLADTNRVKLYHFARFDLAAIEHYLGVTAAPVFCTKIASKLTRTYTDRHGLKNL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLG N+SK QQSSDW D+++ Q YAASDV +LH +R +L+R GR+++A + Sbjct: 122 VEELLGENLSKQQQSSDWGGADINEAQRDYAASDVRYLHRMREILITRLEREGRTEMAQA 181 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA LDL GWE DIF HS Sbjct: 182 CFDFLPTRARLDLAGWEEHDIFHHS 206 >gi|87201263|ref|YP_498520.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444] gi|87136944|gb|ABD27686.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444] Length = 205 Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 108/204 (52%), Positives = 141/204 (69%), Gaps = 3/204 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +HE D+P A A+AVDTET+GL+ RDRLC+VQ+S G G ++R + G A Sbjct: 3 VFLHEEDLPEGALA--PGAVAVDTETMGLITPRDRLCVVQISDGRGDEHLVRFSPGSAFA 60 Query: 64 -PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL +L D +R K++H+ RFD+A + + GV PVFCTKIAS+L RTYT++HGLKD Sbjct: 61 APNLKAVLADPERLKLYHFARFDLAAIEHYLGVVAAPVFCTKIASKLVRTYTDRHGLKDL 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLG ISK QQSSDW A L+D Q +YAASDV HLHA+ E+L+R GR+ +A + Sbjct: 121 VRELLGKEISKQQQSSDWGAPTLTDAQQEYAASDVRHLHAMHTILVERLEREGRTAMAQA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C +FL RA LDL GW DIFSH Sbjct: 181 CFDFLPMRARLDLAGWAERDIFSH 204 >gi|319403664|emb|CBI77249.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498] Length = 206 Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 128/206 (62%), Positives = 159/206 (77%), Gaps = 1/206 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IRVH+GD+P VD+IA+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ Sbjct: 1 MAEIRVHQGDLP-NLDNYCVDSIAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNLV +L D+ KIFH+GRFD+A+L +TFGV VFCTK+AS+LTRTYT++HGLK Sbjct: 60 NSAPNLVTLLEDKTITKIFHFGRFDLAILAHTFGVMPDAVFCTKLASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+AD LS Q++YAASDV++LH L+ F E+L+R R D+A Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C FL RA+LDLLGW VDIF+H Sbjct: 180 KACFQFLPVRAKLDLLGWSEVDIFAH 205 >gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957] gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957] Length = 217 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 106/208 (50%), Positives = 140/208 (67%), Gaps = 7/208 (3%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-- 61 I++H+ D+P + +A+DTET+GL PRRDRLC+VQLS GDG ++I Sbjct: 12 IKLHKHDLPDGID--FGPVVAIDTETMGLDPRRDRLCLVQLSAGDGNAHCVQIIPESLGG 69 Query: 62 ---NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + PNL +L K+FH+ RFD+A+L G+ PV CTKIA++L RT+T++HG Sbjct: 70 RGADCPNLKALLTRPDVVKLFHFARFDVAILRAALGIECAPVRCTKIAAKLVRTFTDRHG 129 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 LKD +ELLG+ ISK QQSSDW A +L+ EQL YAASDV+HLHAL + L+R GR + Sbjct: 130 LKDLCRELLGVEISKQQQSSDWGAPELTPEQLAYAASDVLHLHALWAKLEGLLRREGRLE 189 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA SC FL R +LDLLG+E+ DIFSH Sbjct: 190 LAESCFRFLPARGQLDLLGYEDPDIFSH 217 >gi|326403860|ref|YP_004283942.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301] gi|325050722|dbj|BAJ81060.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301] Length = 218 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 106/210 (50%), Positives = 140/210 (66%), Gaps = 7/210 (3%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TI +H D+P +AVDTET+GL PRRDRLC+VQLS GD + +++I Sbjct: 10 ATIHIHRHDLPDGLDLG--PVVAVDTETMGLDPRRDRLCLVQLSAGDNSAHLVQIVPPAL 67 Query: 62 -----NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + PNL +L K+FH+ RFD+A+L++ GV PV CTKIAS+L RTYT++ Sbjct: 68 GGRGADCPNLKRLLEHPGVTKLFHFARFDLAMLYHALGVTTAPVICTKIASKLVRTYTDR 127 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 HGLKD ++L+GI ISK QQ+SDW + +LS EQ YAASDV+HLHA+ + L R GR Sbjct: 128 HGLKDLCRDLVGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWARLEALLVREGR 187 Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA +C FL RA+LDLLG+E+ DIFSH Sbjct: 188 RELADACYRFLPARAKLDLLGFEDPDIFSH 217 >gi|302381884|ref|YP_003817707.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264] gi|302192512|gb|ADL00084.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264] Length = 204 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 107/205 (52%), Positives = 144/205 (70%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ +HEGD+P + +AVD+ET+GL RRD LC+VQLS GDG ++R++ + Sbjct: 2 TVYLHEGDLPDDLDLG--PEVAVDSETMGLRFRRDPLCVVQLSSGDGDAHVVRLSRPDYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 PNL ++ D KIFH+GRFDIA++ GV PV+CTKIAS+L RTYT++HGLKD Sbjct: 60 CPNLKRLMADRDVLKIFHFGRFDIAMVELHLGVETGPVYCTKIASKLARTYTDRHGLKDV 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +E+ GI++SKAQQSSDW A +LS QL YAASDV+HLH + + E L R GR +LA + Sbjct: 120 AREMAGIDLSKAQQSSDWGAAELSQAQLDYAASDVLHLHVIMRRLNEMLVREGRMELAQA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA LDL GW+ +DIF+H+ Sbjct: 180 CFDFLPVRARLDLRGWDEMDIFAHT 204 >gi|84514850|ref|ZP_01002213.1| exonuclease, putative [Loktanella vestfoldensis SKA53] gi|84511009|gb|EAQ07463.1| exonuclease, putative [Loktanella vestfoldensis SKA53] Length = 203 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 105/206 (50%), Positives = 136/206 (66%), Gaps = 3/206 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H D+P +A+D ET+GL P RDRLC++Q+S GDG +++++ GQ Sbjct: 1 MANFLYH-NDLPDGLNLG--PVVAIDCETMGLNPHRDRLCLIQMSGGDGDCHLVQVSKGQ 57 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 APNL ML D K+FH+GRFDIA L FGV PV+CTKIAS+L RTYT++HGLK Sbjct: 58 AGAPNLCAMLTDPAVLKLFHFGRFDIAALLNAFGVVTAPVYCTKIASKLVRTYTDRHGLK 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L+++LGI+ISK QQ SDW A L+ QL YAASDV++LH L+ F LQR R+ +A Sbjct: 118 VLLQDMLGIDISKHQQQSDWGAPKLTPAQLDYAASDVLYLHQLKAAFDVLLQREDRTAVA 177 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C +FL RA LDL GW DIF+H Sbjct: 178 KACFDFLPTRAALDLHGWPETDIFTH 203 >gi|167648909|ref|YP_001686572.1| 3'-5' exonuclease [Caulobacter sp. K31] gi|167351339|gb|ABZ74074.1| 3'-5' exonuclease [Caulobacter sp. K31] Length = 205 Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 111/207 (53%), Positives = 141/207 (68%), Gaps = 2/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M +HEGD+P A AIA+D+ET+GL RD LC+VQLS GDG ++R+ Sbjct: 1 MANF-LHEGDLPDGVFAGAA-AIAIDSETMGLRLGRDPLCVVQLSSGDGDAHVVRLDRAT 58 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +APNL +L D K+FH+GRFDIA+ GV PV+CTKIAS+L RTYT++HGLK Sbjct: 59 YDAPNLKRLLTDPSVVKLFHFGRFDIAMFLLHLGVMTAPVYCTKIASKLARTYTDRHGLK 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D +EL+G+ +SK QQSSDW A LS EQL YAASDV+HLHALR + L R GR LA Sbjct: 119 DVTRELVGVELSKVQQSSDWGAATLSPEQLAYAASDVLHLHALRERLNAMLVREGRMQLA 178 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 + ++L RA LDL GWE+VDIF+H+ Sbjct: 179 QAAFDYLPHRAALDLAGWEDVDIFAHT 205 >gi|148260666|ref|YP_001234793.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5] gi|146402347|gb|ABQ30874.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5] Length = 218 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 106/210 (50%), Positives = 139/210 (66%), Gaps = 7/210 (3%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TI +H D+P +AVDTET+GL PRRDRLC+VQLS GD + +++I Sbjct: 10 ATIHIHRHDLPDGLDLG--PVVAVDTETMGLDPRRDRLCLVQLSAGDNSAHLVQIVPPAL 67 Query: 62 -----NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + PNL +L K+FH+ RFD+A+L + GV PV CTKIAS+L RTYT++ Sbjct: 68 GGRGADCPNLKRLLEHPGVTKLFHFARFDLAMLHHALGVTTAPVICTKIASKLVRTYTDR 127 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 HGLKD ++L+GI ISK QQ+SDW + +LS EQ YAASDV+HLHA+ + L R GR Sbjct: 128 HGLKDLCRDLVGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWARLEALLVREGR 187 Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA +C FL RA+LDLLG+E+ DIFSH Sbjct: 188 RELADACYRFLPARAKLDLLGFEDPDIFSH 217 >gi|330993409|ref|ZP_08317344.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1] gi|329759439|gb|EGG75948.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1] Length = 215 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 106/205 (51%), Positives = 143/205 (69%), Gaps = 4/205 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I H GD+PA+ + +AVDTET+GL P RDRLC+VQLS GDG ++++ A Sbjct: 10 IHFHRGDLPADVT--FTGMVAVDTETMGLNPHRDRLCLVQLSAGDGQAHLVQVPPHATAA 67 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 PNLV +L D + KI H+ RFD+A+L +TF V V P CTK+AS+L RTYT++HGL + Sbjct: 68 GFPNLVRVLTDARVPKIMHFARFDVAILQHTFNVTVAPCICTKVASKLVRTYTDRHGLAN 127 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +ELLG+ +SK QQSSDW A DL+ EQL YAASDV++LHAL + L R GR D+A Sbjct: 128 LCRELLGVELSKQQQSSDWGATDLTREQLCYAASDVLYLHALWERLEALLHREGRRDVAQ 187 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C +F+ RA LD+LG+++ DIF+H Sbjct: 188 ACFDFMPARARLDILGYQDPDIFAH 212 >gi|254796888|ref|YP_003081725.1| ribonuclease D [Neorickettsia risticii str. Illinois] gi|254590124|gb|ACT69486.1| ribonuclease D [Neorickettsia risticii str. Illinois] Length = 216 Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 107/205 (52%), Positives = 141/205 (68%), Gaps = 2/205 (0%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 ++EGD+PA+ DAIAVDTE++GL+ RRDRLC+VQLS GDGT ++R Sbjct: 12 NKYYIYEGDVPADFPL--SDAIAVDTESMGLVNRRDRLCLVQLSTGDGTAHLVRFNGTDY 69 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +AP L ++VD KIFH+ RFDIA+L + GV +CTKIASRL RTYT+ H LK+ Sbjct: 70 SAPRLKSLIVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLKE 129 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +LLG+ ++K +QSSDW + L+ EQ+ YAASDV++LHA++ L+R R +LA Sbjct: 130 LCSDLLGVRLNKGKQSSDWGSASLTREQMSYAASDVLYLHAIKEALDVMLKREKRIELAQ 189 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 +C FL RAELDLLGWEN DIFSH Sbjct: 190 ACFQFLPYRAELDLLGWENQDIFSH 214 >gi|68171372|ref|ZP_00544766.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa] gi|88657845|ref|YP_507797.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str. Arkansas] gi|67772422|gb|AAY79412.1| ribonuclease D [Ehrlichia chaffeensis] gi|67999197|gb|EAM85853.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa] gi|88599302|gb|ABD44771.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str. Arkansas] Length = 204 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 105/205 (51%), Positives = 141/205 (68%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + VH+ D+P ++ + +AVDTET+GL+ RRD+LC+VQL +G +++ G Sbjct: 2 PVFVHDCDLPNGL--KFENTVAVDTETMGLVCRRDKLCVVQLCDSNGETHLVKFL-GSYQ 58 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNLV +L D KIFH+ RFDIAV+ Y GV P +CTKIAS+L RTYT+ HGLK+ Sbjct: 59 APNLVSVLSDSSITKIFHFARFDIAVIRYYLGVWATPCYCTKIASKLVRTYTDHHGLKEL 118 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ELL + ++K QQSSDW + L+ EQL YAASDV++LHAL+ + LQR + +LA S Sbjct: 119 CYELLNVKLNKMQQSSDWGKETLTSEQLNYAASDVIYLHALKNKLDAMLQRENKQELAAS 178 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C FL RA+LDLLGW+ VDIFSH+ Sbjct: 179 CFGFLPTRAQLDLLGWDGVDIFSHA 203 >gi|16127833|ref|NP_422397.1| ribonuclease D [Caulobacter crescentus CB15] gi|221236653|ref|YP_002519090.1| ribonuclease D [Caulobacter crescentus NA1000] gi|13425349|gb|AAK25565.1| ribonuclease D, putative [Caulobacter crescentus CB15] gi|220965826|gb|ACL97182.1| ribonuclease D [Caulobacter crescentus NA1000] Length = 205 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 110/207 (53%), Positives = 142/207 (68%), Gaps = 2/207 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M VHEGD+P A + IA+D+ET+GL RRD LC+VQLS GDG ++R++ Sbjct: 1 MANF-VHEGDLPDGVFAD-AEIIAIDSETMGLRLRRDPLCVVQLSAGDGDAHVVRLSRPD 58 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + PNL +L + K K+FH+GRFDIA+ GV PV+CTKIAS+L RTYT++HGLK Sbjct: 59 YDCPNLKALLTNPKVLKLFHFGRFDIAMFELHLGVVTAPVYCTKIASKLARTYTDRHGLK 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D +ELLG+ +SK QQSSDW A LS +Q+ YAASDV+HLH LRL+ L+R GR LA Sbjct: 119 DVTRELLGVELSKVQQSSDWGAPSLSVDQVAYAASDVLHLHGLRLKLNAMLEREGRMALA 178 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 ++L RA LDL GWE +DIF+HS Sbjct: 179 QHAFDYLPHRASLDLAGWEEMDIFAHS 205 >gi|269958513|ref|YP_003328300.1| 3'-5' exonuclease [Anaplasma centrale str. Israel] gi|269848342|gb|ACZ48986.1| 3'-5' exonuclease [Anaplasma centrale str. Israel] Length = 204 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 105/203 (51%), Positives = 141/203 (69%), Gaps = 3/203 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + VH D+P + +AVDTET+GL+ RRDR+C+VQLS GDG +++ + G +A Sbjct: 3 VFVHNNDLPDGLDLG--NVVAVDTETMGLVCRRDRVCLVQLSSGDGDAHLVKFS-GDYSA 59 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL ++ + KIFH+ RFD+A + + FG+ P +CTKIASRL RTYTN HGLKD Sbjct: 60 PNLRRIVSNPDIMKIFHFARFDVAAIRHCFGMWATPCYCTKIASRLVRTYTNHHGLKDLC 119 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELLG+ I+KAQQSSDW + L+ EQL YAA+DV++LH ++ + L+R + DLA SC Sbjct: 120 YELLGVKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLDMMLEREDKQDLAESC 179 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 F+ RAELDLLGW+ VDIFSH Sbjct: 180 FKFIPARAELDLLGWDGVDIFSH 202 >gi|56417079|ref|YP_154153.1| ribonuclease D [Anaplasma marginale str. St. Maries] gi|222475445|ref|YP_002563862.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida] gi|254995250|ref|ZP_05277440.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi] gi|255003431|ref|ZP_05278395.1| ribonuclease D (rnd) [Anaplasma marginale str. Puerto Rico] gi|255004550|ref|ZP_05279351.1| ribonuclease D (rnd) [Anaplasma marginale str. Virginia] gi|56388311|gb|AAV86898.1| ribonuclease D [Anaplasma marginale str. St. Maries] gi|222419583|gb|ACM49606.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida] Length = 204 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 105/203 (51%), Positives = 142/203 (69%), Gaps = 3/203 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + VH D+P + +AVDTET+GL+ RRDR+C+VQLS GDG +++ + G +A Sbjct: 3 VFVHNNDLPDGLDLG--NVVAVDTETMGLVCRRDRVCLVQLSSGDGDAHLVKFS-GDYSA 59 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL ++ + + KIFH+ RFD+A + + FG+ P +CTKIASRL RTYTN HGLKD Sbjct: 60 PNLRRIVSNPEIMKIFHFARFDVAAIRHCFGMWAVPCYCTKIASRLVRTYTNHHGLKDLC 119 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELLG+ I+KAQQSSDW + L+ EQL YAA+DV++LH ++ + L+R + DLA SC Sbjct: 120 YELLGVKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLDMMLEREDKQDLAESC 179 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 F+ RAELDLLGW+ VDIFSH Sbjct: 180 FKFIPARAELDLLGWDGVDIFSH 202 >gi|209966458|ref|YP_002299373.1| ribonuclease D, putative [Rhodospirillum centenum SW] gi|209959924|gb|ACJ00561.1| ribonuclease D, putative [Rhodospirillum centenum SW] Length = 204 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 106/205 (51%), Positives = 141/205 (68%), Gaps = 3/205 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-K 61 I +H+GD+P +A+DTET+GL P RDRLC+VQLS GDG +++ G Sbjct: 2 PIDLHDGDLPDGLDLG--PVVAIDTETMGLNPARDRLCLVQLSAGDGRCHLVQFRQGAGY 59 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +APNL ML D K+FH+ RFDIAV+ GV PV+CTK+AS+LTRT+T++HGLKD Sbjct: 60 DAPNLKRMLTDPGTLKLFHFARFDIAVMQAYLGVLTGPVYCTKVASKLTRTFTDRHGLKD 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++LLG+ +SK QQSSDW AD+L+ EQL+YAASDV+HLH ++ + L R GR+ LA Sbjct: 120 LCRDLLGVELSKQQQSSDWGADELTAEQLKYAASDVLHLHEIKARLDGMLAREGRTALAE 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 C FL RA LDL GW + D+F+H Sbjct: 180 DCFRFLPTRALLDLGGWADPDLFAH 204 >gi|163794941|ref|ZP_02188910.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199] gi|159179760|gb|EDP64287.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199] Length = 203 Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 106/204 (51%), Positives = 143/204 (70%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ +H GD+P +A+D+ET+GL P RDRLC+VQ S GDGT +++ A G+ + Sbjct: 2 TVTLHHGDLPDGLDLG--SVVAIDSETMGLRPIRDRLCVVQFSSGDGTAHLVQFAPGEYD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL ML D K+FH+ RFD+AVL GV P++CTKIAS+L RTYT++HGLKD Sbjct: 60 APNLTRMLTDPDVLKLFHFARFDVAVLQAFLGVATAPIYCTKIASKLVRTYTDRHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +EL+G+++SK QQSSDW A +L+ EQL YAASDV+HLHAL+ + L R GR+ +A Sbjct: 120 CRELIGVDLSKQQQSSDWGAAELTAEQLAYAASDVLHLHALKDRLDIMLAREGRTGIAAD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL RA LDL+G+ + DIF+H Sbjct: 180 CFRFLGTRAALDLIGYADEDIFAH 203 >gi|58040278|ref|YP_192242.1| ribonuclease D [Gluconobacter oxydans 621H] gi|58002692|gb|AAW61586.1| Ribonuclease D [Gluconobacter oxydans 621H] Length = 214 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 98/210 (46%), Positives = 136/210 (64%), Gaps = 7/210 (3%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60 I +++GD+P + + +A+DTET+GL P RDRLC+VQLS GDG +++I Sbjct: 5 NAIHLYDGDLPDDFDLGPL--VAIDTETMGLNPHRDRLCLVQLSAGDGEAHLVQIKPVSM 62 Query: 61 ----KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + PNL +L D+ K+ H+ RFD+AVL F + + V CTKIA+RL T+T++ Sbjct: 63 GGRGYDCPNLKALLTDDSVTKLMHFARFDVAVLQNAFNITIPSVICTKIAARLVYTFTDR 122 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 HGL ++LLG+ ISK QQSSDW A L+ +QL+YAASDV++LHAL + L R R Sbjct: 123 HGLAYLCRDLLGVEISKHQQSSDWGAQTLTPDQLRYAASDVLYLHALWDKLEAMLIRENR 182 Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206 DLA +C +FL R LDL+G+E DIFSH Sbjct: 183 RDLAQACYDFLPARCRLDLMGYEEPDIFSH 212 >gi|319405135|emb|CBI78741.1| Ribonuclease D [Bartonella sp. AR 15-3] Length = 206 Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 127/206 (61%), Positives = 158/206 (76%), Gaps = 1/206 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M IR+H+GD+P VD++A+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ Sbjct: 1 MAEIRIHQGDLP-NLDNYCVDSVAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 APNLV +L D+K KIFH+GRFD+A+L +TF V VFCTKIAS+LTRTYT++HGLK Sbjct: 60 NRAPNLVTLLEDKKITKIFHFGRFDLAILAHTFAVMPDVVFCTKIASKLTRTYTDRHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELL +NISK QQSSDW+AD LS Q++YAASDV++LH L+ F E+L+R R D+A Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 +C FL RA+LDLLGW VDIF+H Sbjct: 180 KACFQFLPVRAKLDLLGWAEVDIFAH 205 >gi|88607131|ref|YP_505646.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ] gi|88598194|gb|ABD43664.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ] Length = 204 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 105/203 (51%), Positives = 142/203 (69%), Gaps = 3/203 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + VH D+P + D +AVDTET+GL+ RRDR+C+VQLS G+G +++ G +A Sbjct: 3 VFVHRNDLPHDVDLG--DMVAVDTETMGLVCRRDRVCLVQLSAGNGDAHLVKF-DGDYSA 59 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL ++ D KIFH+ RFD+A + + FG+ P +CTKIASRL RTYTN HGLKD Sbjct: 60 PNLRKVISDPGVLKIFHFARFDVAAIRHGFGMWATPCYCTKIASRLVRTYTNHHGLKDLC 119 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELLG+ I+KAQQSSDW + L+ EQL YAA+DV++LHA++ + L+R + +LA +C Sbjct: 120 YELLGVKINKAQQSSDWGREVLTAEQLSYAAADVIYLHAIKKKLDMMLEREEKQELAEAC 179 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 F+ RAELDLLGW+ VDIFSH Sbjct: 180 FKFVPVRAELDLLGWDGVDIFSH 202 >gi|304320833|ref|YP_003854476.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis HTCC2503] gi|303299735|gb|ADM09334.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis HTCC2503] Length = 204 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 106/204 (51%), Positives = 141/204 (69%), Gaps = 2/204 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +H D+PA+ R+ A+AVD+ETLGL P RDRLC+VQLS GDG ++ AG +A Sbjct: 3 IHLHRNDLPADI--RFDGAVAVDSETLGLNPLRDRLCVVQLSAGDGDAHLVTFDAGAYDA 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P+L +L D + KIFH+ RFD+AV + GV P++CTKIAS+L RTYT++HGLKD + Sbjct: 61 PHLKAVLSDPQLLKIFHFARFDVAVFKHWLGVDTTPIYCTKIASKLARTYTDRHGLKDVV 120 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +E+ G+ +SK QQSSDW+A +L++ Q YAASDV+HLHA+R + R GR L T+ Sbjct: 121 REMTGVELSKQQQSSDWAAAELTEAQRAYAASDVLHLHAVREGLDRMIDREGRRALLTAA 180 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 FL RA LDL GW DIF+HS Sbjct: 181 FAFLPTRAALDLAGWSETDIFAHS 204 >gi|149185091|ref|ZP_01863408.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21] gi|148831202|gb|EDL49636.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21] Length = 207 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 3/205 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKN 62 + HE D+P + A +AVDTET+GL+ RDRLC+VQ+S G+G ++R + Sbjct: 3 VHFHEEDLPEDVLAD--GPVAVDTETMGLVTIRDRLCVVQISDGNGDEHLVRFGPDSDYD 60 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D +R K+FH+ RFD+A + Y GV P +CTKIAS++ RT+T++HGLK+ Sbjct: 61 APNLKAVLGDPERLKLFHFARFDLAAIEYYLGVTAAPCYCTKIASKMVRTFTDRHGLKNL 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ELLG ++SKAQQSSDW L+D Q YAASDV LH ++ + +L+R GR++LA + Sbjct: 121 VEELLGESMSKAQQSSDWGGPVLNDAQRDYAASDVRFLHRMKEELDRRLEREGRTELAQA 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 C +FL RA LD+LGW++ DIFSH+ Sbjct: 181 CFDFLPARAHLDILGWDDHDIFSHA 205 >gi|114327365|ref|YP_744522.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1] gi|114315539|gb|ABI61599.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1] Length = 259 Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 96/210 (45%), Positives = 132/210 (62%), Gaps = 7/210 (3%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TI +H D+P IA+DTET+GL RDRLC++Q+S GDG +++I + Sbjct: 52 KTIHLHRHDLPPSLDIG--PIIAIDTETMGLNHHRDRLCLIQISAGDGHAHLVQIVPERL 109 Query: 62 -----NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + PNL +L + K+ HY RFD+ +L G+ + V CTKIA++L RT+T++ Sbjct: 110 GGKGADCPNLKRLLSNPGCVKLMHYARFDVGILQNALGIAMSNVKCTKIAAKLVRTFTDR 169 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 HGLKD ++LLG+ ISK QQSSDW A +L+ EQ+ YAASDV++LHAL + L R R Sbjct: 170 HGLKDLCRDLLGVEISKQQQSSDWGAPELTPEQMAYAASDVLYLHALWNRLEGLLIREDR 229 Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA +C FL RA LD LG++ DIFSH Sbjct: 230 LALAEACFAFLPARARLDYLGYDEPDIFSH 259 >gi|218440719|ref|YP_002379048.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] gi|218173447|gb|ACK72180.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] Length = 209 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 97/209 (46%), Positives = 131/209 (62%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ E +RY DAIAVDTET+GL P RDRLC++QL +G V IR+ Sbjct: 3 LDNFKVLQEDLSDEILSRYLKADAIAVDTETMGLNPHRDRLCLIQLCDPEGYVTAIRVTK 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ+ AP L ++ K+FH+ RFD+A L + FG+ P+FCTKIAS+L RTYT+ HG Sbjct: 63 GQQEAPKLKQLMEASNITKVFHFARFDVAQLRHHFGIETTPIFCTKIASKLARTYTSSHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK + EL G+ + K QSSDW AD LS+EQL YAA+DV +L ++ + L R R Sbjct: 123 LKSLVLELEGVELDKTAQSSDWGNADKLSEEQLSYAANDVRYLLGVKEKLISMLNRENRM 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA +C N L LDL ++N IF H Sbjct: 183 ELARNCFNCLPVLVSLDLQFYQN--IFEH 209 >gi|91205563|ref|YP_537918.1| ribonuclease D [Rickettsia bellii RML369-C] gi|157827279|ref|YP_001496343.1| ribonuclease D [Rickettsia bellii OSU 85-389] gi|91069107|gb|ABE04829.1| Ribonuclease D [Rickettsia bellii RML369-C] gi|157802583|gb|ABV79306.1| Ribonuclease D [Rickettsia bellii OSU 85-389] Length = 203 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 98/204 (48%), Positives = 135/204 (66%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI +++ D+P + +A+DTET+GL RD+LC++Q S G+G ++ N Sbjct: 2 TITLYQNDLPDDFELE--GDLAIDTETMGLNLYRDKLCLLQFSNGNGDAHLVHFLNQNYN 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D++R KIFH+ RFD+A + G+ + +FCTKI+S+L RTYT HGLKD Sbjct: 60 APNLKNLLSDKERCKIFHFARFDLAAIKKYLGIDLENIFCTKISSKLVRTYTESHGLKDI 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELLG+NISK QQSS W AD+LS +Q +YAA DV++LH LR E L + R +LA Sbjct: 120 CRELLGVNISKQQQSSYWGADNLSSDQQEYAAKDVLYLHKLREHLIEMLVKENRFELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDL+GW+ VDIF+H Sbjct: 180 IFKFLPTRANLDLVGWDEVDIFTH 203 >gi|294084811|ref|YP_003551571.1| 3'- 5' exonuclease family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664386|gb|ADE39487.1| 3'- 5' exonuclease family protein, putative [Candidatus Puniceispirillum marinum IMCC1322] Length = 203 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 140/203 (68%), Gaps = 2/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +++ D+PA+ +A+DTET+GL +RDRLC+VQLS GDG +++IA K + Sbjct: 3 VNIYKDDLPADIDLG--SIVAIDTETMGLKTQRDRLCLVQLSSGDGNAHLVQIAQPAKPS 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L +L D K+FH+ RFD+A L + G ++CTKIAS+L RTYT++HGLK+ Sbjct: 61 PVLAALLADPAVTKLFHFARFDLAALIHYIGAVEGDIYCTKIASKLARTYTDRHGLKELC 120 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +ELL I+ISK QQSSDW A+ L+ +Q YAA DV++LHA+R + + L+R R LA +C Sbjct: 121 RELLQIDISKQQQSSDWGAETLTIDQQNYAAGDVLYLHAIREKLSYMLERENRMALANAC 180 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL +RA+LDL+G+ +VDIF H Sbjct: 181 FGFLPERAQLDLIGFGDVDIFHH 203 >gi|126660170|ref|ZP_01731288.1| 3'-5' exonuclease [Cyanothece sp. CCY0110] gi|126618535|gb|EAZ89286.1| 3'-5' exonuclease [Cyanothece sp. CCY0110] Length = 214 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 100/208 (48%), Positives = 134/208 (64%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 +V + D+ +E RY DAIA+DTET+GL+P+RDRLC+VQL G V IRI Sbjct: 9 NNFQVCDRDLTSETLDRYLQTDAIAIDTETMGLIPQRDRLCLVQLCDSSGYVTAIRIEKE 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 QK APNL +L ++ KIFHY RFD+A Y FG+ P+FCTK+AS+L RTYT HGL Sbjct: 69 QKEAPNLKKLLENQSIVKIFHYARFDVAQFKYNFGIDTAPIFCTKVASKLARTYTGSHGL 128 Query: 120 KDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K ++E+ G+ + K+ QSSDW + +LS+ QL YAA+DV +L LR Q LQR R + Sbjct: 129 KALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLREQLITMLQREERWE 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 +A C N + ELDL+ ++ DIF H Sbjct: 189 IAQKCMNVISVFVELDLMYYK--DIFEH 214 >gi|254422868|ref|ZP_05036586.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335] gi|196190357|gb|EDX85321.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335] Length = 207 Score = 263 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 104/209 (49%), Positives = 134/209 (64%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M V + D+ + RY DAIAVDTET+GL P RDRLC++QL G V IR Sbjct: 1 MENFEVCDYDLTPQLLERYIQADAIAVDTETMGLNPLRDRLCLIQLCDPGGYVCAIRTER 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ +APNL +L ++ KIFH+ RFD+A L + G+ PVFCTKIAS++ RTY+ HG Sbjct: 61 GQSSAPNLKQLLEEKNITKIFHFARFDLATLQHHLGIVTAPVFCTKIASKIARTYSPSHG 120 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK +KEL+GI + K+QQSSDW A LSDEQL YAA+DV +L+ L+ + TE L+R GR Sbjct: 121 LKSLVKELIGIELDKSQQSSDWGNAAALSDEQLSYAANDVRYLYVLQNKLTEMLKREGRW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + L ELDL + +V F H Sbjct: 181 TLAKQCLDCLPVFVELDLRQFGSV--FEH 207 >gi|83313031|ref|YP_423295.1| ribonuclease D [Magnetospirillum magneticum AMB-1] gi|82947872|dbj|BAE52736.1| Ribonuclease D [Magnetospirillum magneticum AMB-1] Length = 203 Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 106/204 (51%), Positives = 137/204 (67%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ H+ D+P + +A+D+ET+GL +RDRLC+VQLS GDG ++ + N Sbjct: 2 TVFYHKNDLPDGLDLGNL--VAIDSETMGLNLQRDRLCVVQLSAGDGHAHVVHYPKPEWN 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +PNLV ML D K K+FH+ RFD+A++ GVR PVFCTKIAS+LTRT T H LK Sbjct: 60 SPNLVRMLADSKVTKLFHFARFDVAMIRRYLGVRCTPVFCTKIASKLTRTNTEGHSLKVL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 KE L I++SK QQSSDW A +L+ +QL YAASDV++LH L+ + L R GR LA + Sbjct: 120 CKEFLNIDLSKLQQSSDWGAPELTADQLAYAASDVLYLHQLKDRLDALLDREGRRALAEA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL DRAELDL GW+ DIFSH Sbjct: 180 CFAFLPDRAELDLAGWDAEDIFSH 203 >gi|225630598|ref|YP_002727389.1| 3'-5' exonuclease [Wolbachia sp. wRi] gi|225592579|gb|ACN95598.1| 3'-5' exonuclease [Wolbachia sp. wRi] Length = 206 Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +++ D+PA V +IAVDTE +GL+ RDRLC+VQLS DG ++++ A Sbjct: 3 IFLYKDDLPASSIPDDVRSIAVDTEAMGLLHGRDRLCLVQLSFNDGNAHLVQL-KNDYTA 61 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D+ KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ Sbjct: 62 PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELL ++K QQSSDW ++L+D+Q YAASDV++LH ++ + L+R R +LA C Sbjct: 122 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 181 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R ELDL+GWENVDIF+H Sbjct: 182 FEFLPTRIELDLMGWENVDIFNH 204 >gi|58698542|ref|ZP_00373443.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae] gi|58534924|gb|EAL59022.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae] Length = 234 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +++ D+PA V +IAVDTE +GL+ RDRLC+VQLS DG ++++ A Sbjct: 31 IFLYKDDLPASSIPDDVRSIAVDTEAMGLLHGRDRLCLVQLSFNDGNAHLVQL-KNDYTA 89 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D+ KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ Sbjct: 90 PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 149 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELL ++K QQSSDW ++L+D+Q YAASDV++LH ++ + L+R R +LA C Sbjct: 150 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 209 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R ELDL+GWENVDIF+H Sbjct: 210 FEFLPTRIELDLMGWENVDIFNH 232 >gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803] gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803] Length = 217 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 93/209 (44%), Positives = 128/209 (61%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 ++ V + D+P + + +AVDTET+GL P RDRLC+VQ+ +G V +RIA Sbjct: 7 LSQFEVFDYDLPEDVCQQLLACKEVAVDTETMGLNPHRDRLCLVQICDPEGNVTALRIAK 66 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ+ APNL ++ D KIFH+ RFD A L +TF ++ P+FCTKIAS++ RTYT+ HG Sbjct: 67 GQEEAPNLTRLMEDPGITKIFHFARFDTAQLKHTFDIKTYPIFCTKIASKIARTYTSHHG 126 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK ++EL+G+ + K+ Q SDW A +LS QL YAA+DV +L LR + + L R R Sbjct: 127 LKTLVQELVGVELDKSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKLEKMLAREDRL 186 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C L LDL + NV F H Sbjct: 187 RLAQRCFECLPVMVTLDLGMYGNV--FEH 213 >gi|166365344|ref|YP_001657617.1| ribonuclease D [Microcystis aeruginosa NIES-843] gi|166087717|dbj|BAG02425.1| probable ribonuclease D [Microcystis aeruginosa NIES-843] Length = 209 Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 98/209 (46%), Positives = 138/209 (66%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ + +RY V++IAVDTET+GL+P RDRLC++QL G V IR+ Sbjct: 3 LDNFQVCDRDLSDDLLSRYLGVNSIAVDTETMGLIPGRDRLCLIQLCDPSGFVTAIRVFR 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ APNL ++ DE+ EK+FH+ RFD+A L TFG+ +P+FCTKIAS+L RTYT+ HG Sbjct: 63 GQTEAPNLKKVMEDERIEKVFHFARFDVAQLSQTFGIATKPIFCTKIASKLARTYTSSHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK ++EL GI + K QSSDW A +L+ +QL YAA+DV +L ++R + LQR R Sbjct: 123 LKSLVQELEGIELDKTAQSSDWGNAANLTPQQLSYAANDVRYLLSVRDKLIVMLQREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C + + LDL ++ DIF H Sbjct: 183 ELAQKCFSCIPIFTALDLQQYK--DIFEH 209 >gi|42520711|ref|NP_966626.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410451|gb|AAS14560.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila melanogaster] Length = 206 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 96/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +++ D+PA + +IAVDTE +GL+ RDRLC+VQLS DG ++++ A Sbjct: 3 IFLYKDDLPASSIPDDIRSIAVDTEAMGLLHSRDRLCLVQLSFNDGNAHLVQL-KNDYTA 61 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D+ KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ Sbjct: 62 PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELL ++K QQSSDW ++L+D+Q YAASDV++LH ++ + L+R R +LA C Sbjct: 122 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 181 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R ELDL+GWENVDIF+H Sbjct: 182 FEFLPTRIELDLMGWENVDIFNH 204 >gi|46201483|ref|ZP_00054962.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1] Length = 203 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 105/204 (51%), Positives = 137/204 (67%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ H+ D+P + +A+D+ET+GL +RDRLC+VQLS GDG ++ + N Sbjct: 2 TVFYHKNDLPDGLDLGNL--VAIDSETMGLNLQRDRLCVVQLSAGDGHAHVVHYPKPEWN 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +PNLV ML D K K+FH+ RFD+A++ GVR P+FCTKIAS+LTRT T H LK Sbjct: 60 SPNLVRMLADPKVTKLFHFARFDVAMIRKYLGVRCNPLFCTKIASKLTRTNTEGHSLKVL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 KE L I++SK QQSSDW A +L+ +QL YAASDV++LH L+ + L R GR LA + Sbjct: 120 CKEFLNIDLSKLQQSSDWGAPELNADQLAYAASDVLYLHQLKDRLDMLLDREGRRALAEA 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL DRAELDL GW+ DIFSH Sbjct: 180 CFAFLPDRAELDLAGWDAEDIFSH 203 >gi|190571105|ref|YP_001975463.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019628|ref|ZP_03335434.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357377|emb|CAQ54811.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995050|gb|EEB55692.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 206 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 94/203 (46%), Positives = 132/203 (65%), Gaps = 1/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +++ D+PA + +IAVDTE +GL+ RDRLC+VQLS DG +++ A Sbjct: 3 IFIYKDDLPASAIPNDIKSIAVDTEAMGLLHSRDRLCLVQLSFNDGNAHLVQF-KNDYTA 61 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D+ KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ Sbjct: 62 PNLRKILEDKNITKIFHFARFDVSIIHYYLQTWALPCYCTKIASRLVRTYTDNHSLKELC 121 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELL I ++K QQSSDW ++L+D+Q YAASDV++LH ++ + L+R R +LA C Sbjct: 122 LELLDIKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHKIKEKLDLMLERENRKELAEKC 181 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R ELD +GW +VDIF+H Sbjct: 182 FEFLPTRIELDSMGWGSVDIFNH 204 >gi|67921652|ref|ZP_00515170.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501] gi|67856764|gb|EAM52005.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501] Length = 214 Score = 261 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 97/208 (46%), Positives = 131/208 (62%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 +V + D+ +E RY DA+A+DTET+GL+P+RDRLC+VQL G V IRI G Sbjct: 9 NNFQVCDRDLSSETLERYLKADALAIDTETMGLVPQRDRLCLVQLCDPSGYVTAIRIERG 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q APNL +L ++ KIFHY RFD+ Y F V P+FCTK+AS+L RTYT HGL Sbjct: 69 QTEAPNLKQLLENKNIVKIFHYARFDVGQFKYNFSVETDPIFCTKVASKLARTYTGSHGL 128 Query: 120 KDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K ++EL G+ + K+ QSSDW + +LS+ QL YAA+DV +L LR Q L+R R + Sbjct: 129 KSLVQELEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIQLREQLITMLKREERWE 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 +A C + ELDL+ ++ DIF H Sbjct: 189 IAQKCMKVIPLFVELDLMYYK--DIFDH 214 >gi|159030499|emb|CAO91403.1| rnd [Microcystis aeruginosa PCC 7806] Length = 209 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 97/209 (46%), Positives = 137/209 (65%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ + +RY V++IAVDTET+GL+P RDRLC++QL G V IRI Sbjct: 3 LDNFQVCDRDLSDDLLSRYLGVNSIAVDTETMGLIPGRDRLCLIQLCDPSGFVTAIRIFR 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ APNL ++ DE+ EK+FH+ RFD+A L TFG+ +P+FCTKIAS+L RTYT+ HG Sbjct: 63 GQTEAPNLKKVMEDERIEKVFHFARFDVAQLSQTFGIATQPIFCTKIASKLARTYTSSHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK ++EL GI + K QSSDW +L+ +QL YAA+DV +L ++R + +QR R Sbjct: 123 LKSLVQELEGIELDKTAQSSDWGNAVNLTPKQLSYAANDVRYLLSVRDKLIVMMQREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C + + LDL ++ DIF H Sbjct: 183 ELAQKCFSCIPIFTALDLQQYK--DIFEH 209 >gi|58584866|ref|YP_198439.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419182|gb|AAW71197.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 206 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 96/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I V++ D+PA V +IAVDTE +GL+ RDRLC++QLS DG +I+ A Sbjct: 3 IFVYKDDLPASSIPDNVRSIAVDTEAMGLLHVRDRLCLIQLSFNDGNAHLIQF-KNDYAA 61 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 PNL +L D+ KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ Sbjct: 62 PNLRKILGDKNITKIFHFARFDVSIICYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ELL ++K QQSSDW +++L+D+Q YAASDV++LH ++ + L+R R +LA C Sbjct: 122 LELLDTKLNKQQQSSDWGSENLTDKQKSYAASDVLYLHKIKEKLDLMLERENRKELAQKC 181 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 FL R ELDL+GWE++DIF+H Sbjct: 182 FEFLPIRVELDLMGWEDMDIFNH 204 >gi|319898371|ref|YP_004158464.1| Ribonuclease D [Bartonella clarridgeiae 73] gi|319402335|emb|CBI75874.1| Ribonuclease D [Bartonella clarridgeiae 73] Length = 193 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 120/187 (64%), Positives = 148/187 (79%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 V++IA+DTETLGL P RDRLC+VQLS GDGT DII++A GQ APNLV +L D+ KIF Sbjct: 6 VNSIAIDTETLGLKPHRDRLCVVQLSSGDGTADIIQVAKGQNRAPNLVALLEDKAITKIF 65 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H+GRFD+A+L +TFGV VFCTKIAS+LTRTYT++HGLK+ ELL INISK QQSSD Sbjct: 66 HFGRFDLAILAHTFGVIPDVVFCTKIASKLTRTYTDRHGLKEICSELLNINISKQQQSSD 125 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199 W+AD LS Q++YAASDV++LH L+ F E+L+R R D+A +C FL RA+LDLLGW Sbjct: 126 WAADALSRAQIEYAASDVLYLHRLKNIFEERLKREEREDIAKACFQFLPVRAKLDLLGWS 185 Query: 200 NVDIFSH 206 VDIF+H Sbjct: 186 EVDIFAH 192 >gi|170078658|ref|YP_001735296.1| putative ribonuclease D [Synechococcus sp. PCC 7002] gi|157811866|gb|ABV80286.1| ribonuclease D [Synechococcus sp. PCC 7002] gi|169886327|gb|ACB00041.1| putative ribonuclease D [Synechococcus sp. PCC 7002] Length = 207 Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 98/209 (46%), Positives = 127/209 (60%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M + + D+ E RY AIA+DTET+GL P RDRLC+VQL G V IRIA Sbjct: 1 MDQFALFDQDLSLEILERYLKSGAIAIDTETMGLNPYRDRLCLVQLCDDAGYVSAIRIAQ 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ APNL ++ + K+FH+ RFD+A L + FG+ RP FCTKIAS+L RTYT+ HG Sbjct: 61 GQTAAPNLKALMEAPEITKVFHFARFDLAQLRHVFGIETRPFFCTKIASKLGRTYTSSHG 120 Query: 119 LKDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK +KEL+G+ + K+ QSSDW LS EQL+YA++DV +L + + T LQR R Sbjct: 121 LKALVKELMGVELDKSAQSSDWGNVAVLSAEQLKYASNDVRYLIPMMRKLTAMLQRENRW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 L C L LDL ++NV F H Sbjct: 181 PLMEECLRCLPTFISLDLAFYDNV--FEH 207 >gi|113475312|ref|YP_721373.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101] gi|110166360|gb|ABG50900.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101] Length = 207 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 95/209 (45%), Positives = 140/209 (66%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M+ +V + D+ + + Y D++AVDTET+GL+PRRDRLC+VQL G V IRI Sbjct: 1 MSDFQVCDRDLTKDILSNYLQADSMAVDTETMGLLPRRDRLCLVQLCDPLGQVTAIRIHK 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ+ APNL ++ K+FH+ RFD+A+L + G++V P+FCTKI+S+L RTYT +HG Sbjct: 61 GQQEAPNLKQLMEANSIVKVFHFARFDVAMLQHYLGIKVSPIFCTKISSKLARTYTGKHG 120 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + EL + + K+ QSSDW A++L+++QL YAA+DV +L ++R + ++ L+R R Sbjct: 121 LKDLVMELEKVELDKSSQSSDWGNAENLTEKQLNYAANDVRYLLSVREKLSKILKREERW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C L LDLL ++ DIF H Sbjct: 181 ELAQQCFECLPVFVGLDLLQYK--DIFEH 207 >gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] Length = 209 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 99/209 (47%), Positives = 136/209 (65%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ +Y++ AIAVDTET+GL+P+RDRLC+VQL +G V +IRIA Sbjct: 3 LQDFQVSDRDLSDAALGQYLESTAIAVDTETMGLLPQRDRLCLVQLCNLEGKVTVIRIAK 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ APNL + K+FH+ RFDIA L G++V PVFCTKIAS+L RTYTN+HG Sbjct: 63 GQTEAPNLKKLFEAANVVKVFHFARFDIATLRANLGIQVSPVFCTKIASKLARTYTNRHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD ++EL + + K+ QSSDW LS+ QL YAA+DV +L +++ + TE L+R R Sbjct: 123 LKDVVQELEKVELDKSSQSSDWGNAVSLSEAQLSYAANDVRYLLSVQQKLTEMLKREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +A C FL LDLL ++ D+F H Sbjct: 183 KIAQECFEFLPTIVSLDLLQFK--DLFEH 209 >gi|157803820|ref|YP_001492369.1| ribonuclease D [Rickettsia canadensis str. McKiel] gi|157785083|gb|ABV73584.1| ribonuclease D [Rickettsia canadensis str. McKiel] Length = 203 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 95/204 (46%), Positives = 131/204 (64%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P R +A+DTET+GL RD+LC++Q S G+G ++ Sbjct: 2 TIKIYQNDLPNNF--RLGGDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFENQNYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKALLSDKSRCKIFHFARFDLAAIKKYLEIELENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+ + L + R +LA Sbjct: 120 CRELLNINISKQQQSSYWRADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRFELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 F+ RA LDLLGW +DIF H Sbjct: 180 IFRFVPTRANLDLLGWNEIDIFMH 203 >gi|117923642|ref|YP_864259.1| 3'-5' exonuclease [Magnetococcus sp. MC-1] gi|117607398|gb|ABK42853.1| 3'-5' exonuclease [Magnetococcus sp. MC-1] Length = 213 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 102/207 (49%), Positives = 129/207 (62%), Gaps = 4/207 (1%) Query: 3 TIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 TI D+ RY +AVDTET+GL RDRLC+VQ+ G V +++I Sbjct: 7 TIHTFIDDLDEAQFQRYMKSPFLAVDTETMGLDINRDRLCVVQMCDVTGEVSVVQIR--N 64 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP L ++ + EKIFH+ RFD+A + + ++PVFCTKIAS+L RTYT HGLK Sbjct: 65 YQAPRLKALMEAPEVEKIFHFARFDLATMKRWLDIEIKPVFCTKIASKLVRTYTGSHGLK 124 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 D +ELLG+ + K QQSSDW A+ L+ EQLQYAASDV+HL +R + E L R GR LA Sbjct: 125 DVSQELLGVVMDKQQQSSDWGAEQLTPEQLQYAASDVIHLVEIRARLVEMLAREGRLQLA 184 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 FL R LDLLGW N DIFSH+ Sbjct: 185 DEIMRFLPTRVALDLLGWNNHDIFSHA 211 >gi|172035932|ref|YP_001802433.1| ribonuclease D [Cyanothece sp. ATCC 51142] gi|171697386|gb|ACB50367.1| ribonuclease D [Cyanothece sp. ATCC 51142] Length = 214 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 96/208 (46%), Positives = 130/208 (62%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 +V + D+ E RY AIA+DTET+GL+P+RDRLC+VQL G V IRI G Sbjct: 9 NKFQVCDRDLSPETLDRYLQAKAIAIDTETMGLIPQRDRLCLVQLCDPSGYVTAIRIEKG 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q+ A NL +L ++ KIFHY RFD+A Y F + P+FCTK+AS+L RTYT HGL Sbjct: 69 QQTAENLKQLLENQNIIKIFHYARFDVAQFKYNFAIETEPIFCTKVASKLARTYTGSHGL 128 Query: 120 KDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K ++E+ G+ + K+ QSSDW + +LS+ QL YAA+DV +L L+ Q LQR R + Sbjct: 129 KALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLKEQLITMLQREERWE 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + ELDL+ ++ DIF H Sbjct: 189 LAQKCMKVIPLFVELDLMYYK--DIFEH 214 >gi|284053636|ref|ZP_06383846.1| 3'-5' exonuclease [Arthrospira platensis str. Paraca] Length = 209 Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 95/209 (45%), Positives = 132/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M +V + D+ + + +A+A+DTET+GL+P RDRLC+VQ+ G V IRI Sbjct: 3 MNDFQVCDRDLSDSRVSEFMEAEALAIDTETMGLLPWRDRLCLVQICDPKGQVVAIRIER 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ+ APNL +L K+FH+ RFD+A L + G+ V PVFCTKIAS+L RTYT +HG Sbjct: 63 GQREAPNLKTLLETTNILKVFHFARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + EL G+ + K+ QSSDW A +LS+ QL YAA+DV +L + + + + L+R R Sbjct: 123 LKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 DLA C L LDL+ ++ DIF H Sbjct: 183 DLALDCFQCLPTIVTLDLMQFD--DIFKH 209 >gi|291571594|dbj|BAI93866.1| ribonuclease D [Arthrospira platensis NIES-39] Length = 207 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 95/209 (45%), Positives = 132/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M +V + D+ + + +A+A+DTET+GL+P RDRLC+VQ+ G V IRI Sbjct: 1 MNDFQVCDRDLSDSRVSEFMEAEALAIDTETMGLLPWRDRLCLVQICDPKGQVVAIRIER 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ+ APNL +L K+FH+ RFD+A L + G+ V PVFCTKIAS+L RTYT +HG Sbjct: 61 GQREAPNLKTLLETTNILKVFHFARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHG 120 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + EL G+ + K+ QSSDW A +LS+ QL YAA+DV +L + + + + L+R R Sbjct: 121 LKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREERW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 DLA C L LDL+ ++ DIF H Sbjct: 181 DLALDCFQCLPTIVTLDLMQFD--DIFKH 207 >gi|218245974|ref|YP_002371345.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801] gi|218166452|gb|ACK65189.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801] Length = 210 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 99/209 (47%), Positives = 130/209 (62%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ E +RY AIAVDTET+GL+P+RDRLC+VQL G V IRI Sbjct: 4 LENFQVCDRDLSDETLSRYLAATAIAVDTETMGLIPQRDRLCLVQLCDPSGFVTAIRIER 63 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQK AP L ++ + K+FHY RFD+A L Y FG+ +P+FCTKIAS+L RTYT+ HG Sbjct: 64 GQKEAPKLKQLMEAKTILKVFHYARFDVAQLRYHFGIETQPIFCTKIASKLARTYTSSHG 123 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK ++EL GI + K QSSDW + +LS QL YAA+DV +L + + LQR R Sbjct: 124 LKSLVQELEGIELDKTSQSSDWGNSANLSVAQLSYAANDVRYLIPAKEKLITMLQREERW 183 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C N + LDL ++ DIF H Sbjct: 184 QLAEQCFNCIPVFVSLDLEQYK--DIFEH 210 >gi|307151178|ref|YP_003886562.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] gi|306981406|gb|ADN13287.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] Length = 209 Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 102/209 (48%), Positives = 131/209 (62%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V EGD+ + A+Y +AIAVDTET+GL+P RDRLC+VQL G V IRIA Sbjct: 3 LDNFQVLEGDLSDDILAQYLQAEAIAVDTETMGLIPHRDRLCLVQLCDPTGYVTAIRIAK 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQK AP L ++ + K+FH+ RFD+A L + G+ P+FCTKIAS+L RTYT+ HG Sbjct: 63 GQKEAPKLKQLMENNHSIKVFHFARFDVAQLRHHLGIETTPIFCTKIASKLARTYTSSHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK + EL GI + K QSSDW A +LS+EQL YAA+DV +L L+ + LQR R Sbjct: 123 LKSLVLELEGIELDKTAQSSDWGNAANLSEEQLSYAANDVRYLLGLKQKLITMLQREDRW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C L LDLL + NV F H Sbjct: 183 QLAQDCFQCLPVIVSLDLLLYPNV--FEH 209 >gi|119513593|ref|ZP_01632605.1| 3'-5' exonuclease [Nodularia spumigena CCY9414] gi|119461746|gb|EAW42771.1| 3'-5' exonuclease [Nodularia spumigena CCY9414] Length = 189 Score = 257 bits (657), Expect = 7e-67, Method: Composition-based stats. Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 3/189 (1%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 DAIAVDTET+GL+P+RDRLC+VQL +G V IRIA GQ APNL ++ KI Sbjct: 3 ASDAIAVDTETMGLLPQRDRLCLVQLCNPEGKVTAIRIAKGQTEAPNLKILMEAVNVVKI 62 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH+ RFDIA L + G++V+PVFCTKIAS+L RTYTN+HGLK+ ++EL I + K+ QSS Sbjct: 63 FHFARFDIATLRHNLGIQVQPVFCTKIASKLARTYTNRHGLKEVVQELEHIELDKSSQSS 122 Query: 139 DWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 DW A +LS+ QL YAA+DV +L ++R + E LQR R ++A C L LDLL Sbjct: 123 DWGNAANLSEAQLNYAANDVRYLISVRQKLMEMLQREERWEIAQECFQVLPTLVTLDLLQ 182 Query: 198 WENVDIFSH 206 ++ D+F H Sbjct: 183 FK--DLFEH 189 >gi|257059023|ref|YP_003136911.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802] gi|256589189|gb|ACV00076.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802] Length = 210 Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 98/209 (46%), Positives = 130/209 (62%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ + +RY AIAVDTET+GL+P+RDRLC+VQL G V IRI Sbjct: 4 LENFQVCDRDLSDQTLSRYLAATAIAVDTETMGLIPQRDRLCLVQLCDPSGFVTAIRIER 63 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQK AP L ++ + K+FHY RFD+A L Y FG+ +P+FCTKIAS+L RTYT+ HG Sbjct: 64 GQKEAPKLKQLMEAKTILKVFHYARFDVAQLRYHFGIETQPIFCTKIASKLARTYTSSHG 123 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK ++EL GI + K QSSDW + +LS QL YAA+DV +L + + LQR R Sbjct: 124 LKSLVQELEGIELDKTSQSSDWGNSANLSVAQLSYAANDVRYLIPAKEKLITMLQREERW 183 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C N + LDL ++ DIF H Sbjct: 184 QLAEQCFNCIPVFVSLDLEQYK--DIFEH 210 >gi|209524209|ref|ZP_03272759.1| 3'-5' exonuclease [Arthrospira maxima CS-328] gi|209495300|gb|EDZ95605.1| 3'-5' exonuclease [Arthrospira maxima CS-328] Length = 207 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 95/209 (45%), Positives = 132/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M +V + D+ + + +A+A+DTET+GL+P RDRLC+VQ+ G V IRI Sbjct: 1 MNDFQVCDRDLSDSRLSEFMAAEALAIDTETMGLLPGRDRLCLVQICDPKGQVVAIRIER 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ+ APNL +L K+FH+ RFD+A L + G+ V PVFCTKIAS+L RTYT +HG Sbjct: 61 GQREAPNLKTLLETANILKVFHFARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHG 120 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + EL G+ + K+ QSSDW A +LS+ QL YAA+DV +L + + + + L+R R Sbjct: 121 LKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLIQMLKREERW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 DLA C L LDL+ ++ DIF H Sbjct: 181 DLALDCFQCLPTIVTLDLMQFD--DIFKH 207 >gi|300867874|ref|ZP_07112515.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506] gi|300334110|emb|CBN57691.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506] Length = 210 Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 100/209 (47%), Positives = 133/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 MT V + D+P + Y +AIA DTET+GL+P RDRLC+VQL +G V ++RIA Sbjct: 1 MTDFNVCDRDLPDTLLSHYLTAEAIAADTETMGLLPWRDRLCLVQLCDAEGIVTVVRIAK 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ+ APNL ++ KIFH+ RFD+A L Y + V PVFC+KIAS+L RTYT +HG Sbjct: 61 GQREAPNLKKLMEASNIVKIFHFARFDMATLKYHLDIHVAPVFCSKIASKLARTYTGKHG 120 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD ++EL + + K QSSDW A +LS++QL+YAA+DV +L + R + LQR R Sbjct: 121 LKDLVQELEQVELDKTAQSSDWGNAANLSEKQLRYAANDVRYLISAREKLITMLQREDRW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C L LDLL ++ DIF H Sbjct: 181 QLAQECFQCLPVIVSLDLLQFK--DIFDH 207 >gi|158334839|ref|YP_001516011.1| ribonuclease D [Acaryochloris marina MBIC11017] gi|158305080|gb|ABW26697.1| ribonuclease D [Acaryochloris marina MBIC11017] Length = 209 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 91/209 (43%), Positives = 135/209 (64%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 ++ +V + D+ Y D IAVDTET+GL P RDRLC+VQ+ +G V ++RIA Sbjct: 3 LSEFQVCDRDLSDAFLQDYLQADRIAVDTETMGLKPHRDRLCLVQICNPEGQVTVVRIAQ 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ +APNL ++ + K+FH+ RFDIA L + + P+FCTKIAS+L RTY+ +HG Sbjct: 63 GQMDAPNLKQLMESDTVLKVFHFARFDIATLLHHLDIETMPIFCTKIASKLVRTYSPRHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK+ ++EL+G + K+ QSSDW A++LS+EQL YA++DV +L + + + L+R R Sbjct: 123 LKELVRELVGEELDKSAQSSDWGNAENLSEEQLNYASNDVRYLLSAQATLVKMLEREERL 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA +C L LDL+ ++N IF H Sbjct: 183 ELAMACFQCLPTIVTLDLMHFDN--IFEH 209 >gi|239787681|emb|CAX84189.1| 3\'-5\' exonuclease family protein [uncultured bacterium] Length = 202 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 111/202 (54%), Positives = 138/202 (68%), Gaps = 3/202 (1%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +H GD+P IA+DTET+GL P RDRLC+VQLS GDG ++ G+ AP Sbjct: 4 YLHHGDLPEGLDLG--PVIAIDTETMGLNPMRDRLCLVQLSSGDGDAHLVHF-QGRYEAP 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D R K+FHY RFDIA+L GV PV+CTKIASRLTRT T++HGLKD + Sbjct: 61 RLKALLADHNRLKLFHYARFDIAMLARWLGVTCTPVYCTKIASRLTRTNTDKHGLKDLCR 120 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 +LLGI++SK QQ+SDW + DL+ EQ YAASDV+HLHAL+ + L+R GR LA SC Sbjct: 121 DLLGIDLSKQQQTSDWGSGDLTAEQQAYAASDVLHLHALKAKLDALLKREGRGALADSCY 180 Query: 185 NFLMDRAELDLLGWENVDIFSH 206 +FL RA LDLLGW DIF+H Sbjct: 181 SFLPTRAALDLLGWGEEDIFAH 202 >gi|239947292|ref|ZP_04699045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] gi|239921568|gb|EER21592.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] Length = 203 Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 94/204 (46%), Positives = 129/204 (63%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P +A+DTET+GL RD+LC++Q S G+G + Sbjct: 2 TIKIYQNDLPNNFELE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHFVHFTNQDYI 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGL D Sbjct: 60 APNLKALLLDKTRCKIFHFARFDLAFIKKYLSIDLENIFCTKISSKLVRTYTDSHGLNDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+ + L + R +LA Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDLLGW +DIF H Sbjct: 180 IFRFLPTRANLDLLGWNEIDIFMH 203 >gi|157825707|ref|YP_001493427.1| ribonuclease D [Rickettsia akari str. Hartford] gi|157799665|gb|ABV74919.1| Ribonuclease D [Rickettsia akari str. Hartford] Length = 203 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 95/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P IA+DTET+GL RD+LC++Q S G+G ++ Sbjct: 2 TIKIYQNDLPDNFELE--GDIAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFVNQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKALLLDKTRCKIFHFARFDLASIKQYLSIDLENIFCTKISSKLVRTYTDNHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W D+LS EQ +YAA DV++LH L+ + L R R +LA Sbjct: 120 CRELLNINISKQQQSSYWGTDNLSSEQKEYAAKDVLYLHQLKDMLQKMLLRENRLELAHD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDL+GW +DIF H Sbjct: 180 IFRFLPTRANLDLIGWNEIDIFMH 203 >gi|56750860|ref|YP_171561.1| ribonuclease D [Synechococcus elongatus PCC 6301] gi|81299489|ref|YP_399697.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942] gi|56685819|dbj|BAD79041.1| probable ribonuclease D [Synechococcus elongatus PCC 6301] gi|81168370|gb|ABB56710.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942] Length = 211 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 97/208 (46%), Positives = 127/208 (61%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 + + E D+ E A R AIA+DTE +GL RDRLC+VQL G +RIA G Sbjct: 6 SDFHLCEQDLTDELLAQYRQSPAIAIDTEAMGLNFHRDRLCLVQLCDSAGITTCVRIAQG 65 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q APNL + D + K+FH+ RFDI L + G+ V+P+FCTKIAS+L RTY++QHGL Sbjct: 66 QTVAPNLQALCEDPQITKVFHFARFDITALKHGLGIAVQPIFCTKIASKLARTYSSQHGL 125 Query: 120 KDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K L+EL+G+ + K QSSDW A LS EQ++YA +DV +L A + + T LQR GR Sbjct: 126 KSLLQELVGVELDKTAQSSDWGNAAALSHEQMRYACNDVRYLLAAQAKLTTMLQREGRWQ 185 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C L A LDL + +V F H Sbjct: 186 LAQDCFACLPTFAALDLAQFGSV--FEH 211 >gi|254466167|ref|ZP_05079578.1| ribonuclease D [Rhodobacterales bacterium Y4I] gi|206687075|gb|EDZ47557.1| ribonuclease D [Rhodobacterales bacterium Y4I] Length = 385 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRI 56 M T+ E AA + VDTE L +LC++QL+ D V + + Sbjct: 1 MKTLTTTEELQAFCDAAAQHPYVTVDTEFLRERTYYSKLCLIQLAFSGNGEDDAVLVDPL 60 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A G P L + DE K+FH R D+ + + GV +P+F T++A+ + + Q Sbjct: 61 ADGISLEP-LYALFRDENVVKVFHAARQDLEIFWVDAGVFPKPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +++++ + K + +DWS LS+ Q YA +DV HL + +L++ GR Sbjct: 119 AGYETLVRKIVKQGLDKTSRFTDWSRRPLSEAQKTYALADVTHLRKIYEFLAAELEKSGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 S L D A D+ W+ V ++S Sbjct: 179 SHWVAEELQVLTDPATYDIQPQEAWQRVKTRTNS 212 >gi|67459045|ref|YP_246669.1| ribonuclease D [Rickettsia felis URRWXCal2] gi|67004578|gb|AAY61504.1| Ribonuclease D [Rickettsia felis URRWXCal2] Length = 203 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 94/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I++++ D+P IA+DTET+GL RD+LC++Q S G+G ++ + Sbjct: 2 NIKIYQDDLPNNFELE--GDIAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFVNQDYS 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKALLLDKTRCKIFHFARFDLAAIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W D+LS EQ +YAA DV++LH L+ + L R R +LA Sbjct: 120 CRELLSINISKQQQSSYWGTDNLSSEQKEYAAKDVLYLHQLKDILQKMLLRENRLELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDL+GW +DIF H Sbjct: 180 IFRFLPTRANLDLIGWNEIDIFMH 203 >gi|51473610|ref|YP_067367.1| ribonuclease D [Rickettsia typhi str. Wilmington] gi|51459922|gb|AAU03885.1| ribonuclease D [Rickettsia typhi str. Wilmington] Length = 203 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 94/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I++++ D+P IAVDTET+GL RD+LC++Q S G+G ++ Sbjct: 2 NIKIYQNDLPNNFKLE--GDIAVDTETMGLNIHRDKLCLLQFSNGNGAAHLVHFINQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W D+LS EQ +YAA DV++LH L+ + L R R +LA Sbjct: 120 CRELLNINISKQQQSSYWGTDNLSLEQKEYAAKDVLYLHQLKDILQKMLFRENRLELAHE 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL R LDL+GW+ +DIF+H Sbjct: 180 IFRFLPTRVNLDLIGWDQIDIFTH 203 >gi|157828459|ref|YP_001494701.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933177|ref|YP_001649966.1| ribonuclease D [Rickettsia rickettsii str. Iowa] gi|157800940|gb|ABV76193.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908264|gb|ABY72560.1| ribonuclease D [Rickettsia rickettsii str. Iowa] Length = 203 Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 93/204 (45%), Positives = 131/204 (64%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P +A+DTET+GL RD+LC++Q S G+G ++ Sbjct: 2 TIKIYQNDLPNNFTLE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APN+ +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNVKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+ + L + R +LA Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDL+GW +DIF H Sbjct: 180 IFRFLPIRANLDLIGWNEIDIFMH 203 >gi|15892510|ref|NP_360224.1| ribonuclease D [Rickettsia conorii str. Malish 7] gi|34580497|ref|ZP_00141977.1| ribonuclease D [Rickettsia sibirica 246] gi|229586700|ref|YP_002845201.1| Ribonuclease D [Rickettsia africae ESF-5] gi|238650888|ref|YP_002916744.1| ribonuclease D [Rickettsia peacockii str. Rustic] gi|15619670|gb|AAL03125.1| ribonuclease D [Rickettsia conorii str. Malish 7] gi|28261882|gb|EAA25386.1| ribonuclease D [Rickettsia sibirica 246] gi|228021750|gb|ACP53458.1| Ribonuclease D [Rickettsia africae ESF-5] gi|238624986|gb|ACR47692.1| ribonuclease D [Rickettsia peacockii str. Rustic] Length = 203 Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 93/204 (45%), Positives = 131/204 (64%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P +A+DTET+GL RD+LC++Q S G+G ++ Sbjct: 2 TIKIYQNDLPNNFKLE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APN+ +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNVKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+ + L + R +LA Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL RA LDL+GW +DIF H Sbjct: 180 IFRFLPIRANLDLIGWNEIDIFMH 203 >gi|260433597|ref|ZP_05787568.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157] gi|260417425|gb|EEX10684.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157] Length = 424 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M T++ + ++ C A + VDTE L +LC++Q++ D V + Sbjct: 40 MKTLKTTQ-ELADFCRLAANFPYVTVDTEFLRERTYYSKLCLIQMAVPSEDEDSAVLVDP 98 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 +A G P L + +E K+FH R D+ + + G+ +P+F T++A+ + + Sbjct: 99 LADGLSLDP-LYELFQNEDVVKVFHAARQDLEIFWVEAGIFPKPLFDTQVAAMVC-GFGE 156 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + ++++ + K + +DWS LSD Q YA +DV HL + +L++ G Sbjct: 157 QVGYETLVRKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELEKTG 216 Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 RS L + D+ W V ++S Sbjct: 217 RSRWVAEELRVLTNPETYDIRPEEAWRRVKTRTNS 251 >gi|157964505|ref|YP_001499329.1| ribonuclease D [Rickettsia massiliae MTU5] gi|157844281|gb|ABV84782.1| Ribonuclease D [Rickettsia massiliae MTU5] Length = 203 Score = 252 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI++++ D+P +A+DTET+GL RD+LC++Q S G+G ++ Sbjct: 2 TIKIYQNDLPNNFELE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+ + L + R +LA Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 +FL RA LDL+GW +DIF + Sbjct: 180 IFHFLPTRANLDLIGWNEIDIFMY 203 >gi|86605802|ref|YP_474565.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab] gi|86554344|gb|ABC99302.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab] Length = 210 Score = 252 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 99/209 (47%), Positives = 136/209 (65%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + ++ + D+ E A +AVDTET+GL+P+RDRLC+VQ++ G V ++R++ Sbjct: 3 LEPFQICDEDLTPEVAEALAGETLLAVDTETMGLIPQRDRLCVVQIANAAGEVVLLRLSR 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 G K AP+L +L D EKIFHY RFD+A+L Y G++ PVFCTKIAS+L RTYT++H Sbjct: 63 GVKQAPHLARLLTDPNIEKIFHYARFDLAMLRYHLGIQAWPVFCTKIASKLARTYTSKHS 122 Query: 119 LKDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + EL G+ ++K QSSDW LS EQL+YAA+DV +L +R + + LQR R Sbjct: 123 LKDVVGELCGVELNKTAQSSDWGNVQALSPEQLEYAANDVRYLIPVRHKLAQMLQREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C L ELDLLG+ NV F H Sbjct: 183 ELAQRCFQHLPTLVELDLLGYGNV--FEH 209 >gi|161618719|ref|YP_001592606.1| ribonuclease D [Brucella canis ATCC 23365] gi|260566676|ref|ZP_05837146.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|161335530|gb|ABX61835.1| ribonuclease D [Brucella canis ATCC 23365] gi|260156194|gb|EEW91274.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 382 Score = 252 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A A D + VDTE + LC++Q++ D T + +A G Sbjct: 1 MQLITTTEALEEAVFALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DE+ K+FH R DI ++F+ + PVF T++A+ + + + Sbjct: 61 DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ G ++ K+ + +DW LSD+QL YA +DV +L + L E+LQ+ GRS+ Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R DL W V Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203 >gi|163741269|ref|ZP_02148661.1| ribonuclease D [Phaeobacter gallaeciensis 2.10] gi|161385622|gb|EDQ09999.1| ribonuclease D [Phaeobacter gallaeciensis 2.10] Length = 385 Score = 252 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M T+ E D+ A C AA D + VDTE L +LC+VQL+ GD ++ Sbjct: 1 MKTLTSTE-DLQAFCEAAAQHDYVTVDTEFLRERTYYSKLCLVQLAYPGAGDENAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A + L + +E K+FH R D+ + + V +P+F T++A+ + + Q Sbjct: 60 LADGLSLEPLYDLFRNETVVKVFHAARQDLEIFWVDAQVFPKPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +++++ + K + +DWS LSD Q YA +DV HL + +L+R GR Sbjct: 119 VGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKRTGR 178 Query: 177 SDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 + L D A D+ W V ++S Sbjct: 179 ARWVEEELQVLTDPATYDVDPQEAWRRVKTRTNS 212 >gi|254718869|ref|ZP_05180680.1| Rnd, ribonuclease D [Brucella sp. 83/13] gi|265983854|ref|ZP_06096589.1| ribonuclease D [Brucella sp. 83/13] gi|306837628|ref|ZP_07470498.1| ribonuclease D [Brucella sp. NF 2653] gi|264662446|gb|EEZ32707.1| ribonuclease D [Brucella sp. 83/13] gi|306407277|gb|EFM63486.1| ribonuclease D [Brucella sp. NF 2653] Length = 385 Score = 252 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A A D + VDTE + LC++Q++ D T + +A G Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DEK K+FH R DI ++F+ + PVF T++A+ + + + Sbjct: 61 DLAP-FFRLMADEKIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ G ++ K+ + +DW LSD+QL YA +DV +L + L E+LQ+ GRS+ Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R DL W V Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203 >gi|86608835|ref|YP_477597.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557377|gb|ABD02334.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 210 Score = 252 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 102/209 (48%), Positives = 138/209 (66%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDI-PAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + ++ + D+ PA A +AVDTET+GL+P+RDRLC+VQ++ G V ++R++ Sbjct: 3 LQPFQLCDEDLTPAVAKALAREPYLAVDTETMGLIPQRDRLCVVQIANSAGEVVLLRLSR 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 G K AP L +L+ EKIFHY RFD+A+L Y G+R PVFCTKIAS+L RTYT++HG Sbjct: 63 GVKQAPFLAQLLMAPSIEKIFHYARFDLAMLRYHLGIRAWPVFCTKIASKLARTYTSKHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + EL G+ ++K QSSDW A LS EQL+YAA+DV +L +R + E L+R R Sbjct: 123 LKDVVSELCGVELNKTAQSSDWGAVHALSAEQLEYAANDVRYLIPVRHKLAEMLRREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C L ELDLLG+ NV F H Sbjct: 183 ELAQQCFQHLPTLVELDLLGFSNV--FEH 209 >gi|163736203|ref|ZP_02143622.1| ribonuclease D [Phaeobacter gallaeciensis BS107] gi|161390073|gb|EDQ14423.1| ribonuclease D [Phaeobacter gallaeciensis BS107] Length = 385 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M T+ E D+ A C AA D + VDTE L +LC+VQL+ GD ++ Sbjct: 1 MKTLTSTE-DLQAFCEAAAQHDYVTVDTEFLRERTYYSKLCLVQLAYPGAGDENAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A + L + +E K+FH R D+ + + V +P+F T++A+ + + Q Sbjct: 60 LADGLSLEPLYDLFRNETVVKVFHAARQDLEIFWVDAQVFPKPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +++++ + K + +DWS LSD Q YA +DV HL + +L+R GR Sbjct: 119 VGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKRTGR 178 Query: 177 SDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 + L D A D+ W V ++S Sbjct: 179 ARWVEEELQVLTDPATYDVDPQEAWRRVKTRTNS 212 >gi|23501637|ref|NP_697764.1| ribonuclease D [Brucella suis 1330] gi|254704076|ref|ZP_05165904.1| ribonuclease D [Brucella suis bv. 3 str. 686] gi|261754734|ref|ZP_05998443.1| ribonuclease D [Brucella suis bv. 3 str. 686] gi|23347555|gb|AAN29679.1| ribonuclease D [Brucella suis 1330] gi|261744487|gb|EEY32413.1| ribonuclease D [Brucella suis bv. 3 str. 686] Length = 385 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A A D + VDTE + LC++Q++ D T + +A G Sbjct: 1 MQLITTTEALEEAVFALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DE+ K+FH R DI ++F+ + PVF T++A+ + + + Sbjct: 61 DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ G ++ K+ + +DW LSD+QL YA +DV +L + L E+LQ+ GRS+ Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R DL W V Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203 >gi|306842001|ref|ZP_07474675.1| ribonuclease D [Brucella sp. BO2] gi|306843696|ref|ZP_07476296.1| ribonuclease D [Brucella sp. BO1] gi|306276006|gb|EFM57715.1| ribonuclease D [Brucella sp. BO1] gi|306287929|gb|EFM59346.1| ribonuclease D [Brucella sp. BO2] Length = 385 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A A D + VDTE + LC++Q++ D T + +A G Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DEK K+FH R DI ++F+ + PVF T++A+ + + + Sbjct: 61 DLAP-FFRLMADEKIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ G ++ K+ + +DW LSD+QL YA +DV +L + L E+LQ+ GRS+ Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R DL W V Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203 >gi|254689015|ref|ZP_05152269.1| Rnd, ribonuclease D [Brucella abortus bv. 6 str. 870] gi|260754508|ref|ZP_05866856.1| ribonuclease D [Brucella abortus bv. 6 str. 870] gi|260674616|gb|EEX61437.1| ribonuclease D [Brucella abortus bv. 6 str. 870] Length = 384 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A A D + VDTE + LC++Q++ D T + +A G Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DE+ K+FH R DI ++F+ + PVF T++A+ + + + Sbjct: 61 DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ G ++ K+ + +DW LSD+QL YA +DV +L + L E+LQ+ GRS+ Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R DL W V Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203 >gi|62289703|ref|YP_221496.1| RND, ribonuclease D [Brucella abortus bv. 1 str. 9-941] gi|148560669|ref|YP_001258731.1| ribonuclease D [Brucella ovis ATCC 25840] gi|163843022|ref|YP_001627426.1| ribonuclease D [Brucella suis ATCC 23445] gi|189023953|ref|YP_001934721.1| Rnd, ribonuclease D [Brucella abortus S19] gi|225627251|ref|ZP_03785288.1| ribonuclease D [Brucella ceti str. Cudo] gi|237815192|ref|ZP_04594190.1| ribonuclease D [Brucella abortus str. 2308 A] gi|254693498|ref|ZP_05155326.1| Rnd, ribonuclease D [Brucella abortus bv. 3 str. Tulya] gi|254697150|ref|ZP_05158978.1| Rnd, ribonuclease D [Brucella abortus bv. 2 str. 86/8/59] gi|254701527|ref|ZP_05163355.1| Rnd, ribonuclease D [Brucella suis bv. 5 str. 513] gi|254707023|ref|ZP_05168851.1| Rnd, ribonuclease D [Brucella pinnipedialis M163/99/10] gi|254709868|ref|ZP_05171679.1| Rnd, ribonuclease D [Brucella pinnipedialis B2/94] gi|254713869|ref|ZP_05175680.1| Rnd, ribonuclease D [Brucella ceti M644/93/1] gi|254717074|ref|ZP_05178885.1| Rnd, ribonuclease D [Brucella ceti M13/05/1] gi|254730046|ref|ZP_05188624.1| Rnd, ribonuclease D [Brucella abortus bv. 4 str. 292] gi|256031360|ref|ZP_05444974.1| Rnd, ribonuclease D [Brucella pinnipedialis M292/94/1] gi|256060870|ref|ZP_05451030.1| Rnd, ribonuclease D [Brucella neotomae 5K33] gi|256257265|ref|ZP_05462801.1| Rnd, ribonuclease D [Brucella abortus bv. 9 str. C68] gi|256369183|ref|YP_003106691.1| ribonuclease D [Brucella microti CCM 4915] gi|260168494|ref|ZP_05755305.1| ribonuclease D [Brucella sp. F5/99] gi|260545541|ref|ZP_05821282.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260757729|ref|ZP_05870077.1| ribonuclease D [Brucella abortus bv. 4 str. 292] gi|260761554|ref|ZP_05873897.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59] gi|260883537|ref|ZP_05895151.1| ribonuclease D [Brucella abortus bv. 9 str. C68] gi|261213756|ref|ZP_05928037.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya] gi|261218885|ref|ZP_05933166.1| ribonuclease D [Brucella ceti M13/05/1] gi|261314491|ref|ZP_05953688.1| ribonuclease D [Brucella pinnipedialis M163/99/10] gi|261317409|ref|ZP_05956606.1| ribonuclease D [Brucella pinnipedialis B2/94] gi|261321616|ref|ZP_05960813.1| ribonuclease D [Brucella ceti M644/93/1] gi|261324867|ref|ZP_05964064.1| ribonuclease D [Brucella neotomae 5K33] gi|261752075|ref|ZP_05995784.1| ribonuclease D [Brucella suis bv. 5 str. 513] gi|261757962|ref|ZP_06001671.1| ribonuclease D [Brucella sp. F5/99] gi|265988446|ref|ZP_06101003.1| ribonuclease D [Brucella pinnipedialis M292/94/1] gi|297248110|ref|ZP_06931828.1| ribonuclease D [Brucella abortus bv. 5 str. B3196] gi|62195835|gb|AAX74135.1| Rnd, ribonuclease D [Brucella abortus bv. 1 str. 9-941] gi|148371926|gb|ABQ61905.1| ribonuclease D [Brucella ovis ATCC 25840] gi|163673745|gb|ABY37856.1| ribonuclease D [Brucella suis ATCC 23445] gi|189019525|gb|ACD72247.1| Rnd, ribonuclease D [Brucella abortus S19] gi|225617256|gb|EEH14301.1| ribonuclease D [Brucella ceti str. Cudo] gi|237790029|gb|EEP64239.1| ribonuclease D [Brucella abortus str. 2308 A] gi|255999343|gb|ACU47742.1| ribonuclease D [Brucella microti CCM 4915] gi|260096948|gb|EEW80823.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260668047|gb|EEX54987.1| ribonuclease D [Brucella abortus bv. 4 str. 292] gi|260671986|gb|EEX58807.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59] gi|260873065|gb|EEX80134.1| ribonuclease D [Brucella abortus bv. 9 str. C68] gi|260915363|gb|EEX82224.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya] gi|260923974|gb|EEX90542.1| ribonuclease D [Brucella ceti M13/05/1] gi|261294306|gb|EEX97802.1| ribonuclease D [Brucella ceti M644/93/1] gi|261296632|gb|EEY00129.1| ribonuclease D [Brucella pinnipedialis B2/94] gi|261300847|gb|EEY04344.1| ribonuclease D [Brucella neotomae 5K33] gi|261303517|gb|EEY07014.1| ribonuclease D [Brucella pinnipedialis M163/99/10] gi|261737946|gb|EEY25942.1| ribonuclease D [Brucella sp. F5/99] gi|261741828|gb|EEY29754.1| ribonuclease D [Brucella suis bv. 5 str. 513] gi|264660643|gb|EEZ30904.1| ribonuclease D [Brucella pinnipedialis M292/94/1] gi|297175279|gb|EFH34626.1| ribonuclease D [Brucella abortus bv. 5 str. B3196] Length = 385 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A A D + VDTE + LC++Q++ D T + +A G Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DE+ K+FH R DI ++F+ + PVF T++A+ + + + Sbjct: 61 DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ G ++ K+ + +DW LSD+QL YA +DV +L + L E+LQ+ GRS+ Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R DL W V Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203 >gi|82699633|ref|YP_414207.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308] gi|82615734|emb|CAJ10730.1| HRDC domain:3'-5' exonuclease:Ribonuclease D [Brucella melitensis biovar Abortus 2308] Length = 385 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A A D + VDTE + LC++Q++ D T + +A G Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDELAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DE+ K+FH R DI ++F+ + PVF T++A+ + + + Sbjct: 61 DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ G ++ K+ + +DW LSD+QL YA +DV +L + L E+LQ+ GRS+ Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R DL W V Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203 >gi|33863970|ref|NP_895530.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313] gi|33635554|emb|CAE21878.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313] Length = 214 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 91/208 (43%), Positives = 128/208 (61%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 + V +GD+ ++ A RY AIAVDTE +GL+ RDRLC+VQ+ V +RI G Sbjct: 9 ASFVVFDGDLDSDWANRYLRASAIAVDTEAMGLIHGRDRLCLVQICDPADNVACVRIGLG 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q +AP L ++ EK+FH+ RFD+A L G+ V P+FCTK+ASRL RTY+ +HGL Sbjct: 69 QTSAPRLQKLMEAPSVEKVFHFARFDVAALASGLGIYVLPIFCTKVASRLARTYSPRHGL 128 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K+ + EL+G+ + K QSSDW ++LSD QL YAA+D +L R + L+R GR + Sbjct: 129 KEVVMELVGVELDKQAQSSDWGRVEELSDVQLAYAANDARYLLPARQRLEMMLRREGRWE 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 +A C + + AELD L + IF H Sbjct: 189 IAQRCFSCIPVIAELDRLRFTQ--IFEH 214 >gi|17231283|ref|NP_487831.1| ribonuclease D [Nostoc sp. PCC 7120] gi|17132925|dbj|BAB75490.1| ribonuclease D [Nostoc sp. PCC 7120] Length = 209 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 94/209 (44%), Positives = 133/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ A+Y +AIAVDTET+GL+P+RDRLC++QL +G V IRIA Sbjct: 3 LQDFQVGDRDLSDATVAQYLQSEAIAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRIAQ 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ APNL +L K+FH+ RFD+A L + + V+P+FCTKIAS+L RTYTN+HG Sbjct: 63 GQTAAPNLKKLLEATNVLKVFHFARFDVATLLHHLDIHVQPIFCTKIASKLARTYTNRHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + EL + + K+ Q SDW A +L++ QL YAA+DV +L + + + L+R R Sbjct: 123 LKDLVHELEQVELDKSAQGSDWGNAANLTEAQLSYAANDVRYLLSAQQKLVAMLKREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C L LDLL ++ D+F H Sbjct: 183 ELAQQCFQVLPTIVSLDLLQFK--DLFEH 209 >gi|220907657|ref|YP_002482968.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425] gi|219864268|gb|ACL44607.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425] Length = 217 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 98/208 (47%), Positives = 138/208 (66%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 T +V++ D+PA+ + + D IAVDTET+GL P+RDRLC+VQL+ G + +IRI G Sbjct: 12 TDFQVYDRDLPADTLSYFLTADRIAVDTETMGLKPQRDRLCLVQLAHPQGLITVIRIGQG 71 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q++AP+L +L K+FH+ RFDI L Y + V+P+FCTKIAS+L RTY+ +HGL Sbjct: 72 QRSAPHLKQLLEHPGTTKVFHFARFDITTLRYHLDIWVQPLFCTKIASKLARTYSPRHGL 131 Query: 120 KDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 KD ++EL G+ + K QSSDW +L++EQL+YA++DV +L A + + E LQR R Sbjct: 132 KDLIRELEGVELDKTVQSSDWGNPNNLTEEQLRYASNDVRYLLAAQAKLVEMLQRENRWQ 191 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + L A LDLL +E IF H Sbjct: 192 LAQECFHCLPTLASLDLLEFEA--IFEH 217 >gi|282899306|ref|ZP_06307275.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] gi|281195763|gb|EFA70691.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] Length = 209 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 98/209 (46%), Positives = 137/209 (65%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V +GD+ + Y DA+AVDTET+GL+P+RDRLC+VQL +G V +RIA Sbjct: 3 LDDFQVVDGDLDYPTLSEYLRSDALAVDTETMGLLPQRDRLCLVQLCNPEGKVTAVRIAK 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ +APNL +L K+FH+ RFD+A L + + V+PVFCTKIAS+L RTYTN+HG Sbjct: 63 GQTHAPNLQQLLESTDVVKVFHFARFDLATLRHNLKIHVQPVFCTKIASKLARTYTNRHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK+ ++EL + + K+ QSSDW LSD QL YAA+DV +L +L+ + ++ LQR R Sbjct: 123 LKELVQELEQVELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C +FL LDLL ++ + F H Sbjct: 183 QLAQECFSFLPTLVSLDLLQFKEL--FEH 209 >gi|260436505|ref|ZP_05790475.1| 3'-5' exonuclease [Synechococcus sp. WH 8109] gi|260414379|gb|EEX07675.1| 3'-5' exonuclease [Synechococcus sp. WH 8109] Length = 225 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 125/206 (60%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V + D+ A RY +AVDTE +GL+ RDRLC+VQ++ + V +RI GQ Sbjct: 22 FAVFDRDLDAAWTERYLQSPRLAVDTEAMGLIHGRDRLCLVQIADAEDRVACVRIGLGQT 81 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL +L EK+FH+ RFD+A L G+ V PVFCTK+ SRL RTYT +HGLKD Sbjct: 82 EAPNLKRLLEAPTVEKVFHFARFDVAALAAGLGIEVNPVFCTKVGSRLGRTYTPRHGLKD 141 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL+G+ + K QSSDW D+L+D QL YAA+DV +L R + + L+R GR DLA Sbjct: 142 LVMELVGVELDKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEKMLRREGRWDLA 201 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C + AELD L + IF H Sbjct: 202 QRCFQCVPVVAELDRLRFHQ--IFEH 225 >gi|282897776|ref|ZP_06305775.1| 3'-5' exonuclease [Raphidiopsis brookii D9] gi|281197455|gb|EFA72352.1| 3'-5' exonuclease [Raphidiopsis brookii D9] Length = 209 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 98/209 (46%), Positives = 137/209 (65%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V +GD+ + Y DA+AVDTET+GL+P+RDRLC+VQL +G V +RIA Sbjct: 3 LDDFQVLDGDLDHPTLSEYLRSDALAVDTETMGLVPQRDRLCLVQLCNPEGKVTAVRIAK 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ +APNL +L K+FH+ RFD+A L + + V+PVFCTKIAS+L RTYTN+HG Sbjct: 63 GQTHAPNLQQLLESTHVVKVFHFARFDLATLRHNLKIYVQPVFCTKIASKLARTYTNRHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK+ ++EL + + K+ QSSDW LSD QL YAA+DV +L +L+ + ++ LQR R Sbjct: 123 LKELVQELEQLELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 L C +FL LDLL ++ D+F H Sbjct: 183 QLVQECFSFLPTLVSLDLLQFK--DLFEH 209 >gi|17987486|ref|NP_540120.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M] gi|225852267|ref|YP_002732500.1| ribonuclease D [Brucella melitensis ATCC 23457] gi|256044440|ref|ZP_05447344.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1] gi|256113284|ref|ZP_05454152.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether] gi|256264225|ref|ZP_05466757.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9] gi|260563791|ref|ZP_05834277.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265990860|ref|ZP_06103417.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1] gi|265994696|ref|ZP_06107253.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether] gi|17983183|gb|AAL52384.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M] gi|225640632|gb|ACO00546.1| ribonuclease D [Brucella melitensis ATCC 23457] gi|260153807|gb|EEW88899.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|262765809|gb|EEZ11598.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether] gi|263001644|gb|EEZ14219.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1] gi|263094471|gb|EEZ18293.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9] gi|326408773|gb|ADZ65838.1| ribonuclease D [Brucella melitensis M28] gi|326538491|gb|ADZ86706.1| ribonuclease D [Brucella melitensis M5-90] Length = 385 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A A D + VDTE + LC++Q++ D T + +A G Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DE+ K+FH R DI ++F+ + PVF T++A+ + + + Sbjct: 61 DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ G ++ K+ + +DW LSD+QL YA +DV +L + L E+LQ+ GRS+ Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R DL W V Sbjct: 179 NEEIAVLTARQTYDLHPDDAWRRVK 203 >gi|332709748|ref|ZP_08429707.1| ribonuclease D [Lyngbya majuscula 3L] gi|332351575|gb|EGJ31156.1| ribonuclease D [Lyngbya majuscula 3L] Length = 216 Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 95/209 (45%), Positives = 130/209 (62%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+P Y D++AVDTET+GL+ +RDRLC+VQL G V +RI Sbjct: 10 LKDFQVCDRDLPESICQEYLRADSLAVDTETMGLIYQRDRLCLVQLCDPQGRVTFVRIDK 69 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ AP L +L K+FH+ RFD+A+L G+ V PVFCTKIAS+L RTYT+ HG Sbjct: 70 GQTEAPRLKQLLEATNVLKVFHFARFDVAMLRQNLGIDVNPVFCTKIASKLARTYTSSHG 129 Query: 119 LKDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK+ +KEL I++ K+ QSSDW +LSD+QL+YAA+DV +L +R + L+R R Sbjct: 130 LKELVKELERIDLDKSAQSSDWGNVANLSDQQLEYAANDVRYLLNVRQKLINMLEREDRW 189 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C L LDLL + D+F H Sbjct: 190 ELAQQCFEALPTMVSLDLLHYR--DVFEH 216 >gi|75908135|ref|YP_322431.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] gi|75701860|gb|ABA21536.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] Length = 209 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 95/209 (45%), Positives = 133/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ +Y +AIAVDTET+GL+P+RDRLC++QL +G V IRIA Sbjct: 3 LQDFQVGDRDLSDAAVDQYLQSEAIAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRIAR 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ APNL +L K+FH+ RFD+A L + + V+P+FCTKIAS+L RTYTN+HG Sbjct: 63 GQTAAPNLKKLLEATNVLKVFHFARFDVATLRHHLDIHVQPIFCTKIASKLARTYTNRHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + EL + + K+ QSSDW A +L+D QL YAA+DV +L + + + L+R R Sbjct: 123 LKDLVYELEQVELDKSAQSSDWGNAANLTDAQLSYAANDVRYLLSAQQKLVAMLKREERW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C L LDLL ++ D+F H Sbjct: 183 ELAQQCFQVLPTIVSLDLLQFK--DLFEH 209 >gi|288958469|ref|YP_003448810.1| ribonuclease D [Azospirillum sp. B510] gi|288910777|dbj|BAI72266.1| ribonuclease D [Azospirillum sp. B510] Length = 396 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 2/193 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT I + + + I VDTE L +LC+VQ+ DG V I +A G Sbjct: 1 MTLITTTDALQAFCQSLAGTEYITVDTEFLREKTYWPQLCLVQVGGPDGAVAIDPLAEGI 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P L ++ D K+FH R D+ + ++ G P+F T++A+ + + G + Sbjct: 61 DLTP-LFALMSDPSVLKVFHAARQDVEIFWHLSGQIPHPLFDTQVAAMVC-GFGESVGYE 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + +L G I K+ + +DWS L++ QL YA SDV+HL + +L R GRS Sbjct: 119 TLVTKLAGARIDKSSRFTDWSHRPLTERQLTYALSDVIHLRPAYEKLKRRLARSGRSHWL 178 Query: 181 TSCCNFLMDRAEL 193 L D A Sbjct: 179 EEEMAILTDPATY 191 >gi|294852115|ref|ZP_06792788.1| ribonuclease D [Brucella sp. NVSL 07-0026] gi|294820704|gb|EFG37703.1| ribonuclease D [Brucella sp. NVSL 07-0026] Length = 385 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A A D + VDTE + LC++Q++ D T + +A G Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DE+ K+FH R DI ++F+ + PVF T++A+ + + + Sbjct: 61 DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ ++ K+ + +DW LSD+QL YA +DV +L + L E+LQ+ GRS+ Sbjct: 119 QLVQKVTSKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R DL W V Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203 >gi|256159482|ref|ZP_05457250.1| Rnd, ribonuclease D [Brucella ceti M490/95/1] gi|256254768|ref|ZP_05460304.1| Rnd, ribonuclease D [Brucella ceti B1/94] gi|261221947|ref|ZP_05936228.1| ribonuclease D [Brucella ceti B1/94] gi|265997910|ref|ZP_06110467.1| ribonuclease D [Brucella ceti M490/95/1] gi|260920531|gb|EEX87184.1| ribonuclease D [Brucella ceti B1/94] gi|262552378|gb|EEZ08368.1| ribonuclease D [Brucella ceti M490/95/1] Length = 385 Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A A D + VDTE + LC++Q++ D T + +A G Sbjct: 1 MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DE+ K+FH R DI ++F+ + PVF T++A+ + + + Sbjct: 61 DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ G ++ K+ + +DW LSD+QL YA +DV +L + L E+LQ+ GRS+ Sbjct: 119 QLMQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R DL W V Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203 >gi|56697032|ref|YP_167394.1| ribonuclease D [Ruegeria pomeroyi DSS-3] gi|56678769|gb|AAV95435.1| ribonuclease D [Ruegeria pomeroyi DSS-3] Length = 385 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M T+ ++ A C AA + VDTE L +LC++QL+ D V + Sbjct: 1 MKTLTTT-PELAAFCKAAASHAYVTVDTEFLRERTYYSKLCLIQLAYPGEDADSAVLVDP 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 +A G + P L + D K+FH R D+ + + GV P+F T++A+ + + Sbjct: 60 LAEGLELEP-LYTLFRDTSVVKVFHAARQDLEIFWVDAGVFPEPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + ++++ + K + +DWS LSD Q YA +DV HL + L + G Sbjct: 118 QVGYETLVRKICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAADLAKTG 177 Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 RS L D A D+ W + ++S Sbjct: 178 RSHWVAEELRTLTDPATYDIRPEEAWRRIKTRTNS 212 >gi|99081315|ref|YP_613469.1| ribonuclease D [Ruegeria sp. TM1040] gi|99037595|gb|ABF64207.1| ribonuclease D [Ruegeria sp. TM1040] Length = 385 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M T+ + ++ A C A + VDTE L +LC++Q++ G+ ++ Sbjct: 1 MKTLTTTD-ELRAFCQEAAKYPYVTVDTEFLRERTYYSKLCLIQIAYRGDGETDAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 +G + L + +E K+FH R D+ + + GV +P+F T++A+ + + Q Sbjct: 60 LSGDLSLEPLYELFRNEDVVKVFHAARQDLEIFWVDAGVFPKPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ + K + +DWS LSD Q YA +DV HL + ++L + R Sbjct: 119 VGYETLVRKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLRKELDKTKR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 S L D A ++ W V ++S Sbjct: 179 SHWVAEELQVLTDPATYNIQPREAWRRVKTRTNS 212 >gi|119487500|ref|ZP_01621110.1| ribonuclease D [Lyngbya sp. PCC 8106] gi|119455669|gb|EAW36805.1| ribonuclease D [Lyngbya sp. PCC 8106] Length = 208 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 94/209 (44%), Positives = 132/209 (63%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M+ +V + DI + + Y D +AVDTET+GL+P RDRLC+VQL G V ++IA Sbjct: 1 MSNFQVCDRDISEDILSSYLTADRLAVDTETMGLLPWRDRLCLVQLCDPKGQVTAVKIAK 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 Q AP+L +L K+FH+ RFD+A L Y + V PVFCTKIAS+L RTYT +HG Sbjct: 61 DQTEAPHLKKLLEASNTLKVFHFARFDMATLLYYLDIDVNPVFCTKIASKLARTYTGRHG 120 Query: 119 LKDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LK+ ++EL + + K+ QSSDW +LS++QL YAA+DV +L ++ + L+R R Sbjct: 121 LKELVQELEQVELDKSSQSSDWGNVGNLSEDQLNYAANDVRYLLNVQQKLMVMLEREERL 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 DLA +C + L LDLL ++ DIF H Sbjct: 181 DLAQNCFDCLPTIVTLDLLHYK--DIFEH 207 >gi|259416057|ref|ZP_05739977.1| ribonuclease D [Silicibacter sp. TrichCH4B] gi|259347496|gb|EEW59273.1| ribonuclease D [Silicibacter sp. TrichCH4B] Length = 385 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M T+ + ++ A C A + VDTE L +LC++Q++ G ++ Sbjct: 1 MKTLTTTD-ELRAFCEEAANYPYVTVDTEFLRERTYYSKLCLIQIAFRGDGKTDAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + + L + +E K+FH R D+ + + V +P+F T++A+ + + Q Sbjct: 60 LSSDLSLEPLYELFRNEDVVKVFHAARQDLEIFWVDASVFPKPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ + K + +DWS LSD Q YA +DV HL + ++L + GR Sbjct: 119 VGYETLVRKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLRKELDKTGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 S L D A D+ W V ++S Sbjct: 179 SHWVAEELQVLTDPATYDIQPREAWRRVKTRTNS 212 >gi|318042597|ref|ZP_07974553.1| ribonuclease [Synechococcus sp. CB0101] Length = 234 Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 91/206 (44%), Positives = 121/206 (58%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V +GD+ E A+AVDTE +GL+ RDRLC+VQ+S V IRI GQ Sbjct: 29 FAVLDGDLTPEWHELLGRSSALAVDTEAMGLVHGRDRLCLVQISDDQDNVCCIRILRGQS 88 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 AP L ++ K+FH+ RFD+A L G+ V P+FCTK+ASRL RTYTN+HGLK+ Sbjct: 89 EAPLLKQLMEHSGIVKVFHFARFDVAALGEGLGIAVNPLFCTKVASRLARTYTNRHGLKE 148 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL G+ + K QSSDW ++LS+ QL YAA+DV +L R + T+ L+R R DLA Sbjct: 149 LVSELCGVELDKGAQSSDWGRVEELSETQLAYAANDVRYLLPARERLTQMLEREERLDLA 208 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 + AELD + IF H Sbjct: 209 QRSFQCIPVIAELDRGRFGA--IFEH 232 >gi|209548705|ref|YP_002280622.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534461|gb|ACI54396.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 381 Score = 247 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 6/200 (3%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 4 TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ D K K+FH R DI ++F + P+F T++A+ + + + + Sbjct: 63 FFELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + ++I K+ + +DWS LSD+QL+YA +DV HL + L +L R GR+ + + Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEMD 181 Query: 186 FLMDRAELDLL---GWENVD 202 L R DL W+ + Sbjct: 182 ILEARETYDLHPDDAWQRLK 201 >gi|116075800|ref|ZP_01473059.1| putative ribonuclease D [Synechococcus sp. RS9916] gi|116067115|gb|EAU72870.1| putative ribonuclease D [Synechococcus sp. RS9916] Length = 214 Score = 247 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 126/206 (61%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V +GD+ A A RY A+AVDTE +GL+ RDRLC+VQ+ D V +RI GQ Sbjct: 11 FAVFDGDLDAAWAERYGRAKALAVDTEAMGLIHGRDRLCLVQICDPDDHVACVRIGLGQT 70 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 AP L ++ + EK+FH+ RFD+A L G+ V P+FCTK+ASRL RTYT +HGLKD Sbjct: 71 EAPRLEALMESKAVEKVFHFARFDVAALASGLGIAVNPIFCTKVASRLARTYTPRHGLKD 130 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL+G+ + K QSSDW D+L++ QL YAA+D +L R + L+R GR +LA Sbjct: 131 LVMELVGVELDKQAQSSDWGRVDELTEAQLAYAANDARYLLPARDRLELMLRREGRWELA 190 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C + A+LD L + V F H Sbjct: 191 ERCFPCIPVIADLDRLRFNQV--FEH 214 >gi|78211959|ref|YP_380738.1| 3'-5' exonuclease [Synechococcus sp. CC9605] gi|78196418|gb|ABB34183.1| 3'-5' exonuclease [Synechococcus sp. CC9605] Length = 214 Score = 247 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 123/206 (59%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V + D+ A RY +AVDTE +GL+ RDRLC+VQ++ + V +RI GQ Sbjct: 11 FAVFDRDLDAAWTERYLQSPRLAVDTEAMGLIHGRDRLCLVQIADAEDRVACVRIGLGQT 70 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL + EK+FH+ RFD+A L + V PVFCTK+ SRL RTYT +HGLKD Sbjct: 71 EAPNLKRLFEAPTVEKVFHFARFDVAALAAGLSIEVNPVFCTKVGSRLGRTYTPRHGLKD 130 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL+G+ + K QSSDW D+L+D QL YAA+DV +L R + + L+R GR DLA Sbjct: 131 LVMELVGVELDKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEQMLRREGRWDLA 190 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C + AELD L + IF H Sbjct: 191 QRCFQCVPVVAELDRLRFHQ--IFEH 214 >gi|113955257|ref|YP_729699.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311] gi|113882608|gb|ABI47566.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311] Length = 214 Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 91/208 (43%), Positives = 126/208 (60%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 V +GD+ A+ A RY A+AVDTE +GL+ RDRLC+VQ+ + V +RIA G Sbjct: 9 RAFAVFDGDLDADWAERYSHATALAVDTEAMGLIHGRDRLCLVQICDAEDQVSCVRIALG 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q AP L ++ EK+FH+ RFD+A L G+RV P+FCTK+ SRL RTY+ +HGL Sbjct: 69 QTEAPRLKELMERASIEKVFHFARFDVAALATGLGIRVNPIFCTKVGSRLARTYSPRHGL 128 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K+ + EL+G+ + K QSSDW D+LS+ QL YAA+D +L R + E LQR GR + Sbjct: 129 KEVVMELVGVELDKQAQSSDWGRVDELSETQLAYAANDARYLLPARDRLKEMLQREGRWE 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + ++LD + F H Sbjct: 189 LAERCFECIPVMSDLDRFRFNQ--TFEH 214 >gi|254512186|ref|ZP_05124253.1| ribonuclease D [Rhodobacteraceae bacterium KLH11] gi|221535897|gb|EEE38885.1| ribonuclease D [Rhodobacteraceae bacterium KLH11] Length = 385 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M T+ + + A CA A + VDTE L +LC+VQL+ GD + ++ Sbjct: 1 MKTLTTTQ-QLAAFCAEAAQYPYVTVDTEFLRERTYYSKLCLVQLAVPAEGDDSAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A + L + +E K+FH R D+ + + GV P+F T++A+ + + Q Sbjct: 60 LAEGMSLDPLYELFRNESVVKVFHAARQDLEIFWVDAGVFPTPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ + K + +DWS L++ Q YA +DV HL + +L++ R Sbjct: 119 VGYETLVRKICKEGVDKTSRFTDWSRRPLTEAQKSYALADVTHLRKIYEYLAGELKKTKR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 L D+ W V ++S Sbjct: 179 DHWVAEELRILTRAETYDIRPEEAWRRVKTRTNS 212 >gi|33866568|ref|NP_898127.1| putative ribonuclease D [Synechococcus sp. WH 8102] gi|33633346|emb|CAE08551.1| putative ribonuclease D [Synechococcus sp. WH 8102] Length = 214 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 96/206 (46%), Positives = 128/206 (62%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V +GD+ A+ RY+ A+AVDTE +GL+ RDRLC+VQ++ D V IRI GQ Sbjct: 11 FAVFDGDLDADWTERYLRMSALAVDTEAMGLIHGRDRLCLVQIADADDRVCCIRIGLGQT 70 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +APNL +L EK+FH+ RFD+A L G+ V P+FCTK+ SRL RTYT +HGLKD Sbjct: 71 SAPNLQRLLEAASVEKVFHFARFDVAALASGLGIAVSPIFCTKVGSRLGRTYTPRHGLKD 130 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL+G+ + K QSSDW D+LSD QL YAA+DV +L R + L+R GR DLA Sbjct: 131 LVMELVGVELDKGAQSSDWGRVDELSDVQLAYAANDVRYLLPARQKLEAMLRREGRWDLA 190 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C + A+LD + + F H Sbjct: 191 QRCFGCIPVIADLDRMRFNQ--TFEH 214 >gi|298491354|ref|YP_003721531.1| 3'-5' exonuclease ['Nostoc azollae' 0708] gi|298233272|gb|ADI64408.1| 3'-5' exonuclease ['Nostoc azollae' 0708] Length = 209 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 98/209 (46%), Positives = 135/209 (64%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 + +V + D+ A + Y +AIAVDTET+GL+P+RDRLC+VQL G V I IA Sbjct: 3 LPDFQVSDRDLDAASLSEYLQSEAIAVDTETMGLLPQRDRLCLVQLCNSQGKVTAICIAK 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 GQ APNL +L K+FH+ RFD+A L + ++V+PVFCTKIAS+L RTYTN HG Sbjct: 63 GQTEAPNLKQLLEATHILKVFHFARFDVATLRHNLEIQVQPVFCTKIASKLARTYTNLHG 122 Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD ++EL + + K+ QSSDW +LS+ QL YAA+DV +L ++ + T+ L+R GR Sbjct: 123 LKDVVQELEQVELDKSAQSSDWGNAVNLSETQLSYAANDVRYLLNVQQKLTQMLEREGRW 182 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +LA C L LDLL ++ D+F H Sbjct: 183 ELAQQCFQVLPTLVSLDLLQFK--DLFEH 209 >gi|89069870|ref|ZP_01157204.1| ribonuclease D [Oceanicola granulosus HTCC2516] gi|89044546|gb|EAR50665.1| ribonuclease D [Oceanicola granulosus HTCC2516] Length = 385 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M TI E D+ CA A + VDTE L LC+VQL+ G ++ Sbjct: 1 MRTITTTE-DLATFCAEAAKAPYVTVDTEFLRERTYYPHLCLVQLAYPGDGKTDAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 G + L + D K+FH R D+ + ++ V P+F T++A+ + + Q Sbjct: 60 LEGGLDLAPLYALFQDHGVVKVFHAARQDLEIFWHGGQVIPEPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ N+ K+ + +DWS LS+ Q +YA +DV HL + + +L + GR Sbjct: 119 VGYETLVRKIARENLDKSSRFTDWSRRPLSEAQKRYALADVTHLRVIYEELKAELDKSGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 L D A + W+ V ++S Sbjct: 179 IKWLAEEMAILKDPATYVVQPDEAWQRVKTRTNS 212 >gi|15604287|ref|NP_220803.1| hypothetical protein RP422 [Rickettsia prowazekii str. Madrid E] gi|3860979|emb|CAA14879.1| unknown [Rickettsia prowazekii] gi|292572036|gb|ADE29951.1| Ribonuclease D [Rickettsia prowazekii Rp22] Length = 203 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 94/204 (46%), Positives = 129/204 (63%), Gaps = 2/204 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I++++ D+P+ IAVDTET+GL RD+LC++Q S G+G ++ Sbjct: 2 NIKIYQNDLPSNFKLE--GDIAVDTETMGLNIHRDKLCLLQFSNGNGEAHLVHFINQDYT 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L+D+ R KIFH+ RFD+A + + + +FCTKI+S+L RTYT+ HGLKD Sbjct: 60 APNLKMLLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +ELL INISK QQSS W D LS EQ +YAA DV++LH L+ + L R R +LA Sbjct: 120 CRELLNINISKQQQSSYWGTDHLSLEQKEYAAKDVLYLHQLKDILQKMLLRENRLELAHD 179 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 FL R LDL+GW+ +DIF H Sbjct: 180 IFRFLPTRVHLDLIGWDQIDIFMH 203 >gi|239831578|ref|ZP_04679907.1| ribonuclease D [Ochrobactrum intermedium LMG 3301] gi|239823845|gb|EEQ95413.1| ribonuclease D [Ochrobactrum intermedium LMG 3301] Length = 385 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A A D + VDTE + LC++Q++ + T + +A G Sbjct: 1 MHLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPNHTALVDALAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DEK K+FH R DI ++F+ + PVF +++A+ + + + Sbjct: 61 DLAP-FFSLMADEKVVKVFHAARQDIEIVFHLGDLIPSPVFDSQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ G +I K+ + +DW LS++QL YA +DV +L + L ++L++ GRS+ Sbjct: 119 QLVQKVTGKHIDKSSRFTDWRRRPLSEKQLDYALADVTYLRDIYLYLKQELEKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R DL W V Sbjct: 179 NEEMAVLTSRETYDLHPDDAWRRVK 203 >gi|254409855|ref|ZP_05023636.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420] gi|196183852|gb|EDX78835.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420] Length = 207 Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 98/209 (46%), Positives = 130/209 (62%), Gaps = 5/209 (2%) Query: 1 MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M +V + D+P Y +AIAVDTET+GL+ +RDRLC+VQL V +IRI Sbjct: 1 MAEFQVCDRDLPDALLKTYLNAEAIAVDTETMGLIYQRDRLCLVQLCDPQDRVTVIRIDK 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 Q APNL +L + K+FH+ RFD+A+L + V+PVFCTKIAS+L RTYTN+HG Sbjct: 61 KQTEAPNLKQLLEAQTVLKVFHFARFDLAILRQNLDIYVQPVFCTKIASKLARTYTNRHG 120 Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LKD + +L + + K+ QSSDW +LSDEQL+YAA+DV +L ++R + LQR R Sbjct: 121 LKDLVMDLEQVELDKSSQSSDWGNPNNLSDEQLRYAANDVRYLLSVRQKLITMLQREERW 180 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C L LDLL + DIF H Sbjct: 181 QLAQECFEALSVMVSLDLLLYR--DIFEH 207 >gi|153009869|ref|YP_001371084.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188] gi|151561757|gb|ABS15255.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188] Length = 385 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A A D + VDTE + LC++Q++ D T + +A G Sbjct: 1 MHLITTTQALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DE K+FH R DI ++F+ + PVF +++A+ + + + Sbjct: 61 DLAP-FFRLMADETIVKVFHAARQDIEIVFHLGDLIPSPVFDSQVAAMVC-GFGDAISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++ G I K+ + +DW LSD+QL YA +DV +L + L E+L++ GRS+ Sbjct: 119 QLVQKVTGKQIDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELEKEGRSEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R D+ W V Sbjct: 179 NEEMAVLTSRETYDMHPDDAWRRVK 203 >gi|254454077|ref|ZP_05067514.1| ribonuclease D [Octadecabacter antarcticus 238] gi|198268483|gb|EDY92753.1| ribonuclease D [Octadecabacter antarcticus 238] Length = 395 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M TI ++ CA A + VDTE L +LC++QL+ GD V + Sbjct: 11 MKTITTT-AELATYCAQAAKYPYVTVDTEFLRERTYYSKLCLIQLAYMGEGGDDAVLVDP 69 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 +A G AP L + DE K+FH R D+ + F G+ +P+F T++A+ + + Sbjct: 70 LAEGLDLAP-LYELFKDENVVKVFHAARQDLEIFFVDQGIIPKPLFDTQVAAMVC-GFGE 127 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + ++++ N+ K+ + +DWS L+D Q YA +DV HL + + +L++ G Sbjct: 128 QAGYETLVRKIAKDNVDKSSRFTDWSRRPLTDAQKTYALADVTHLRVIYENLSAELEKSG 187 Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 R L D A W+ V + S Sbjct: 188 RKKWVAEEMAVLNDPATYQADPDNAWKRVKTRTSS 222 >gi|87124930|ref|ZP_01080777.1| putative ribonuclease D [Synechococcus sp. RS9917] gi|86167250|gb|EAQ68510.1| putative ribonuclease D [Synechococcus sp. RS9917] Length = 213 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 92/208 (44%), Positives = 125/208 (60%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 V +GD+ A A RY A +AVDTE +GL+ RDRLC+VQL GD V +RI G Sbjct: 8 RDFAVFDGDLDAAWADRYAKASRLAVDTEAMGLVHGRDRLCLVQLCDGDDNVSCVRIGLG 67 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q AP L ++ EK+FH+ RFD+A L G+ V P+FCTK+ASRL RTY+ +HGL Sbjct: 68 QCEAPRLKALMEAAAVEKVFHFARFDVAALASGLGIAVDPIFCTKVASRLARTYSPKHGL 127 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K+ + EL+G+ + K QSSDW ++LS+ QL YAA+D +L R + L+R GR + Sbjct: 128 KEVVLELVGVELDKQAQSSDWGRVEELSEAQLAYAANDARYLLPARERLEVMLRREGRWE 187 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + +ELD L + F H Sbjct: 188 LAQRCFRCIPVMSELDRLRFAQ--TFEH 213 >gi|114326875|ref|YP_744031.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1] gi|114315049|gb|ABI61109.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1] Length = 429 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 59/193 (30%), Positives = 88/193 (45%), Gaps = 3/193 (1%) Query: 2 TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 T+ D+ A C R + +DTE + LC+VQL D I +A Sbjct: 46 PTLITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPEL 105 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP +L D K+FH R DI + FG +P+F T++A+ + + +Q G Sbjct: 106 DLAPV-GELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVA-GFGDQVGYD 163 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + L G +I KA + SDWS LS Q+ YAA+DV HL + ++L++ GR Sbjct: 164 TLVSSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEGRLAWV 223 Query: 181 TSCCNFLMDRAEL 193 + L D A Sbjct: 224 SEEMAVLNDPATY 236 >gi|78185488|ref|YP_377923.1| 3'-5' exonuclease [Synechococcus sp. CC9902] gi|78169782|gb|ABB26879.1| 3'-5' exonuclease [Synechococcus sp. CC9902] Length = 214 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 91/206 (44%), Positives = 124/206 (60%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V +GD+ A RY+ +AVDTE +GL+ RDRLC+VQ++ V +RIA GQ Sbjct: 11 FAVFDGDLDASWTERYLQMPCLAVDTEAMGLIHGRDRLCLVQIADAQDRVACVRIALGQS 70 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL + EK+FH+ RFD+A L + V+P+FCTK+ SRL RTYT +HGLKD Sbjct: 71 TAPNLQRLFEAPSVEKVFHFARFDVAALAAGLDIAVQPLFCTKVGSRLGRTYTPRHGLKD 130 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL+G+ + K QSSDW D+L+D QL YAA+DV +L R + L+R GR +LA Sbjct: 131 LVMELVGVELDKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNKLETMLRREGRWELA 190 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C + AELD + + F H Sbjct: 191 QRCFACIPVMAELDRMRFNQ--TFEH 214 >gi|254474856|ref|ZP_05088242.1| ribonuclease D [Ruegeria sp. R11] gi|214029099|gb|EEB69934.1| ribonuclease D [Ruegeria sp. R11] Length = 385 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M TI + ++ C A + VDTE L +LC+VQL+ + V + Sbjct: 1 MKTITTTD-ELETFCQEAAQHPYVTVDTEFLRERTYFSKLCLVQLAYPGKDNENAVLVDP 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 +A G P L + +E K+FH R D+ + + V P+F T++A+ + + Sbjct: 60 LADGLSLEP-LYALFRNESVVKVFHAARQDLEIFWVDAQVFPTPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + +++++ + K + +DWS LSD Q YA +DV HL + +L+R Sbjct: 118 QVGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAAELKRTE 177 Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 RS L D A ++ W V ++S Sbjct: 178 RSHWVAEELQVLTDPATYEINPRDAWRRVKTRTNS 212 >gi|254419933|ref|ZP_05033657.1| ribonuclease D [Brevundimonas sp. BAL3] gi|196186110|gb|EDX81086.1| ribonuclease D [Brevundimonas sp. BAL3] Length = 383 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 8/206 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 MT I +E + CA I VDTE + RLC++Q + D I +A G Sbjct: 1 MTPITTNEA-LADFCARLATAPFITVDTEFMRETTYWPRLCLIQAASADHAGIIDPMAEG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P L +L D K K+FH R D+ + G RP+F T++A+ + + Q Sbjct: 60 LDLEPFL-DLLRDPKIIKVFHACRQDVEIFVR-LGAMPRPMFDTQVAA-MAAGFGEQVAY 116 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++++L + + K + +DW+ LSD QL YA DV HL AL + ++L++ GR D Sbjct: 117 DSLVRQMLRVELDKGSRFTDWARRPLSDSQLVYALGDVTHLAALYPKLRDRLKKEGRLDW 176 Query: 180 ATSCCNFLMDRAELDL---LGWENVD 202 S L+D A D W+ + Sbjct: 177 VMSEMESLIDPALYDTNPENAWKRLK 202 >gi|86138715|ref|ZP_01057288.1| ribonuclease D [Roseobacter sp. MED193] gi|85824775|gb|EAQ44977.1| ribonuclease D [Roseobacter sp. MED193] Length = 385 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M T+ + + A C A + VDTE L +LC++Q++ G+ ++ Sbjct: 1 MKTLTTTDA-LQAFCEEAANHPYVTVDTEFLRERTYYSKLCLIQIAFSGDGENDAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + + L + DE K+FH R D+ + + V +P+F T++A+ + + +Q Sbjct: 60 LSEGLSLEPLYALFRDESVVKVFHAARQDLEIFWVDANVFPKPLFDTQVAAMVC-GFGDQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +++++ + K+ + +DWS LS+ Q YA +DV HL + L+R GR Sbjct: 119 VGYETLVRKIVKEGVDKSSRFTDWSRRPLSEAQQAYALADVTHLRRVYEYLAADLERSGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 S L D A ++ W V + S Sbjct: 179 SHWVAEELQVLTDPATYNIQPQDAWRRVKTRTSS 212 >gi|84501108|ref|ZP_00999343.1| ribonuclease D [Oceanicola batsensis HTCC2597] gi|84391175|gb|EAQ03593.1| ribonuclease D [Oceanicola batsensis HTCC2597] Length = 385 Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M TI E D+ A C A D + VDTE L +LC++Q++ D +I Sbjct: 1 MRTITTTE-DLAAFCNEAASCDYVTVDTEFLRERTYYSQLCLIQMAMPGEDDENAVLIDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 +G + L + ++ K+FH R D+ + + GV +P+F T+IA+ + + Q Sbjct: 60 LSGNLDLAPLYELFRNQAVVKVFHAARQDLEIFYVDAGVIPQPLFDTQIAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +K + + K+ + +DWS L++ Q +YA +DV HL + +KL+R R Sbjct: 119 VGYETLVKRIAKQQLDKSSRFTDWSRRPLTEAQKKYALADVTHLRKIYEYLADKLRRQKR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 L + W+ V + S Sbjct: 179 EAWVEEELGILTSPETYIVRPEEAWQRVRTRTSS 212 >gi|83951561|ref|ZP_00960293.1| ribonuclease D [Roseovarius nubinhibens ISM] gi|83836567|gb|EAP75864.1| ribonuclease D [Roseovarius nubinhibens ISM] Length = 385 Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M TI + + C AR + VDTE L +LC+VQL+ G V + Sbjct: 1 MITITTTDA-LADYCQEARKHPYVTVDTEFLRERTYYSKLCLVQLAMPGEDDAGAVLVDP 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 +A G P L + DE K+FH R D+ + + G+ +P+F T++A+ + + Sbjct: 60 LAEGLSLEP-LYELFRDENVVKVFHAARQDLEIFYVDAGLIPQPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + ++ + + K+ + +DWS LS+ Q +YA DV HL + +L++ G Sbjct: 118 QVGYETLVRRIAKEQLDKSSRFTDWSRRPLSEAQKKYALGDVTHLRRIYEYLAAELEKSG 177 Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 R LMD A W+ + ++S Sbjct: 178 RDAWVKEELGTLMDPATYITRPEDAWQRIKTRNNS 212 >gi|126737525|ref|ZP_01753255.1| ribonuclease D [Roseobacter sp. SK209-2-6] gi|126720918|gb|EBA17622.1| ribonuclease D [Roseobacter sp. SK209-2-6] Length = 388 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 7/213 (3%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRIA 57 M I + A + VDTE L +LC++QL+ G+ ++ Sbjct: 1 MKIITTTDELQSFCEEAAQYAYVTVDTEFLRERTYYSKLCLIQLAFAGDGEEDAVLVDPL 60 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 A L + +E K+FH R D+ + + GV +P+F T++A+ + + Q Sbjct: 61 AEGLALDPLYDLFRNEAVVKVFHAARQDLEIFWVDAGVFPKPLFDTQVAAMVC-GFGEQV 119 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G + ++++ ++ K+ + +DWS LS Q YA +DV HL + ++L++ GRS Sbjct: 120 GYETLVRKIAKQSLDKSSRFTDWSRRPLSGAQKTYALADVTHLRRIYEFLAKELEKSGRS 179 Query: 178 DLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 L D A D+ W V + S Sbjct: 180 HWVAEELKVLTDPATYDIRPEEAWRRVKTRTSS 212 >gi|15964944|ref|NP_385297.1| ribonuclease D protein [Sinorhizobium meliloti 1021] gi|307301014|ref|ZP_07580783.1| ribonuclease D [Sinorhizobium meliloti BL225C] gi|15074123|emb|CAC45770.1| Probable ribonuclease D [Sinorhizobium meliloti 1021] gi|306903969|gb|EFN34555.1| ribonuclease D [Sinorhizobium meliloti BL225C] Length = 383 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 6/200 (3%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C I +DTE L LC++Q++ + V + +A G AP Sbjct: 4 TTADLEAACRELARSSYITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ + K+FH R DI ++ + + P+F T++A+ + + + + Sbjct: 63 FFALMSNPDVVKVFHAARQDIEIIHHLGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVNR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + I K+ + +DWS L+D+QL YA +DV HL + T++L R GRS Sbjct: 122 IKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEEMA 181 Query: 186 FLMDRAELDL---LGWENVD 202 L R DL W+ + Sbjct: 182 ILESRETYDLHPDNAWQRLK 201 >gi|227821514|ref|YP_002825484.1| ribonuclease D [Sinorhizobium fredii NGR234] gi|227340513|gb|ACP24731.1| ribonuclease D [Sinorhizobium fredii NGR234] Length = 383 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 6/200 (3%) Query: 7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 ++ A C I +DTE L LC++Q++ D V + +A G AP Sbjct: 4 TTAELEAACQELALSSYITIDTEFLRETTFWPELCLIQMAGPDTAVIVDPMAPGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ + K+FH R DI ++ + + P+F T++A+ + + + + Sbjct: 63 FFALMANADVVKVFHAARQDIEIIHHLGNLIPHPLFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + I K+ + +DWS L+D+QL YA +DV HL + +L+R GRS Sbjct: 122 IKNVQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDVYHYLKAELEREGRSSWLAEEMA 181 Query: 186 FLMDRAELDL---LGWENVD 202 L R DL W+ + Sbjct: 182 ILESRETYDLHPENAWQRLK 201 >gi|222148187|ref|YP_002549144.1| ribonuclease D [Agrobacterium vitis S4] gi|221735175|gb|ACM36138.1| ribonuclease D [Agrobacterium vitis S4] Length = 384 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 6/197 (3%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A C + I +DTE L LC++Q++ D V + +A G AP Sbjct: 7 DLEAACEKLAKSEFITIDTEFLRETTFWPELCLIQMASPDLEVIVDPLAEGLDLAP-FFK 65 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++ + K+FH R DI ++F+ + P+F T++A+ + + + ++++ Sbjct: 66 LMANGDVIKVFHAARQDIEIIFHLGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVQKIKN 124 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 I+I K+ + +DWS LS++QL YA +DV HL + L +L+R GR+ + L Sbjct: 125 IHIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLTLNAELEREGRASWLSEEMAILE 184 Query: 189 DRAELDLL---GWENVD 202 R DL W+ + Sbjct: 185 SRDTYDLHPDDAWQRLK 201 >gi|159904246|ref|YP_001551590.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211] gi|159889422|gb|ABX09636.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211] Length = 214 Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 84/208 (40%), Positives = 126/208 (60%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 T + + D+ + + ++A+DTE +GLM RDRLC+VQ+ V IRI Sbjct: 9 KTFHILDRDLDEKSFKEFSTKASLAIDTEAMGLMHGRDRLCLVQICDESDNVICIRIERN 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 QK+AP L +L + +KIFH+ RFD+A L ++V P+FCTK+AS++ RTY+ +HGL Sbjct: 69 QKSAPLLKNLLENPSIQKIFHFARFDVAALEVNLDIKVTPIFCTKVASKIGRTYSPRHGL 128 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K+ + EL+ + + K QSSDW A +DLS +QL YAA+DV +L + + L+R GR + Sbjct: 129 KEVVMELVNVELDKQAQSSDWGAVEDLSAKQLAYAANDVRYLIKAKEKLEHMLKREGRWE 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 L T C + +ELD+ + N IF H Sbjct: 189 LTTKCFQCIPVMSELDIYRFGN--IFEH 214 >gi|330813574|ref|YP_004357813.1| ribonuclease D related protein [Candidatus Pelagibacter sp. IMCC9063] gi|327486669|gb|AEA81074.1| ribonuclease D related protein [Candidatus Pelagibacter sp. IMCC9063] Length = 205 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 92/205 (44%), Positives = 130/205 (63%), Gaps = 2/205 (0%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I +++ D+P ++A+D E+LGL RD+LC++QL GD V I++ Sbjct: 2 NITLYQNDLPENHKLTNAQSVAIDAESLGLNYKGRDKLCLLQLCSGDDEVYIVQFDRNNY 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +PNL +L D KI H+ RF++ +L Y ++ ++CTKIAS+L RTYT++HGL D Sbjct: 62 KSPNLCKILNDNNILKIAHFARFEMGILKYYLNAKIENIYCTKIASKLGRTYTDKHGLYD 121 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 KELL I ++K+QQSSDW DLS+EQ QYAA DV++LH L+ + L+R R LA Sbjct: 122 ITKELLNITLNKSQQSSDWGLKDLSEEQKQYAALDVLYLHKLKEKLDLMLRREKRDQLAK 181 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 C +FL R+ELDL GW+ DIFSH Sbjct: 182 YCFDFLSTRSELDLNGWDE-DIFSH 205 >gi|307317748|ref|ZP_07597186.1| ribonuclease D [Sinorhizobium meliloti AK83] gi|306896510|gb|EFN27258.1| ribonuclease D [Sinorhizobium meliloti AK83] Length = 383 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 6/200 (3%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C I +DTE L LC++Q++ + V + +A G AP Sbjct: 4 TTADLEAACRELARSSYITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ + K+FH R DI ++ + + P+F T++A+ + + + + Sbjct: 63 FFALMSNPDVVKVFHAARQDIEIIHHLGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVNR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + I K+ + +DWS L+D+QL YA +DV HL + T++L R GRS Sbjct: 122 IKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEEMA 181 Query: 186 FLMDRAELDL---LGWENVD 202 L R DL W+ + Sbjct: 182 ILESRETYDLHPDNAWQRLK 201 >gi|86357133|ref|YP_469025.1| RNase D protein [Rhizobium etli CFN 42] gi|86281235|gb|ABC90298.1| RNase D protein [Rhizobium etli CFN 42] Length = 381 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 6/200 (3%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 4 TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTMEVLVDPLAKGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ D K K+FH R DI ++F + P+F T++A+ + + + + Sbjct: 63 FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + ++I K+ + +DWS LS++QL+YA +DV HL + L + +L R GR+ + Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSEKQLEYALADVTHLRDVYLSLSSQLDREGRTSWLREEMD 181 Query: 186 FLMDRAELDLL---GWENVD 202 L R D+ W+ + Sbjct: 182 ILEARETYDMHPDDAWQRLK 201 >gi|126725300|ref|ZP_01741142.1| ribonuclease D [Rhodobacterales bacterium HTCC2150] gi|126704504|gb|EBA03595.1| ribonuclease D [Rhodobacterales bacterium HTCC2150] Length = 385 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M TI E D+ C A + VDTE L +LC+VQL+ V + Sbjct: 1 MRTITTTE-DLAEYCTQAAKFPYVTVDTEFLRERTYYAKLCLVQLAMPGDDDSNAVLVDP 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 +A G AP L + DE K+FH R D+ + F GV P+F T++A+ + + + Sbjct: 60 LAKGLSLAP-LYDLFRDENVVKVFHAARQDLEIFFVEEGVIPSPLFDTQVAAMVC-GFGD 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + ++++ + K+ + +DWS LSD Q YA +DV HL + ++L++ Sbjct: 118 QVGYETLVRKIAREAVDKSSRFTDWSRRPLSDAQKTYALADVTHLRVVYEYLAKELEKSK 177 Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 R+ T L + + + W+ V ++S Sbjct: 178 RTKWVTEELGVLTEPSTYIVEPANAWKRVKTRTNS 212 >gi|116251369|ref|YP_767207.1| ribonuclease D [Rhizobium leguminosarum bv. viciae 3841] gi|115256017|emb|CAK07098.1| putative ribonuclease D [Rhizobium leguminosarum bv. viciae 3841] Length = 381 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 6/200 (3%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 4 TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ D K K+FH R DI ++F + P+F T++A+ + + + + Sbjct: 63 FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + ++I K+ + +DWS LSD+QL YA +DV HL + L +L R GRS + + Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLSLKAELDREGRSSWLSEEMD 181 Query: 186 FLMDRAELDLL---GWENVD 202 L R D+ W+ + Sbjct: 182 ILESRETYDMHPDDAWQRLK 201 >gi|296117272|ref|ZP_06835863.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769] gi|295976165|gb|EFG82952.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769] Length = 421 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 2/176 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R I +DTE + LC+VQL+ D V + +A G AP L +L DE Sbjct: 49 LRREPFITIDTEFVRERTYWPELCLVQLASADEVVVVDALAPGMDLAP-LGELLADEGVI 107 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH R D+ + + F +P+F T++A+ + Y +Q G + ++G I K+ + Sbjct: 108 KVFHAARQDLEIFLHLFDRLPQPLFDTQVAAMVA-GYGDQVGYDSLVASVVGAQIDKSHR 166 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 SDW+A LS Q++YAA+DV +L + + +L R GR D T+ + L A Sbjct: 167 FSDWAARPLSAAQIEYAAADVTYLREVYQRLVAQLDREGRKDWMTAEMDVLNSPAT 222 >gi|240850739|ref|YP_002972139.1| ribonuclease D [Bartonella grahamii as4aup] gi|240267862|gb|ACS51450.1| ribonuclease D [Bartonella grahamii as4aup] Length = 384 Score = 242 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 6/206 (2%) Query: 1 MTTIRVHEGDIP-AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + D+ A A R D + VDTE + +LC++QL+ D TV I IA Sbjct: 1 MMNLITQTTDLEIALNALRTSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAPD 60 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P +++D+K K+FH R DI +++ GV P+F T+IA + + + Sbjct: 61 IDLQP-FFDLMIDKKVVKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSIC-GFGDSISY 118 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ G ++ K+ + +DWS LS++QL YA +DV +L + L ++L++ R+ Sbjct: 119 DQIVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRAHW 178 Query: 180 ATSCCNFLMDRAELDL---LGWENVD 202 L++ D+ W+ V Sbjct: 179 MDDELTILLNPKTYDMPEDEAWKKVK 204 >gi|124026737|ref|YP_001015852.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A] gi|123961805|gb|ABM76588.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A] Length = 214 Score = 242 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 125/208 (60%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 +T + + DI +E A R A+AVDTE +GL+ RDRLC++Q+ V IRI Sbjct: 9 STFNIFDQDIDSETEIALRSSSALAVDTEAMGLIHGRDRLCLIQICDEFDNVICIRIERN 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q +AP+L +L ++ EK+FH+ RFD+A L + V P+FCTKIAS++ RTY+ +HGL Sbjct: 69 QHSAPHLKSILENKTIEKVFHFARFDVAALASNLNINVNPIFCTKIASKIGRTYSPRHGL 128 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K+ + E +G+ + K QSSDW DL+ +QL YAA+DV +L + + E L+R R Sbjct: 129 KEVVLETVGVELDKQAQSSDWGKVGDLTQKQLIYAANDVRYLLGAKHKLEEMLKREERWG 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + +ELD + N IF H Sbjct: 189 LAQKCFQCVPVLSELDRRRFTN--IFDH 214 >gi|241203984|ref|YP_002975080.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857874|gb|ACS55541.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 381 Score = 242 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 6/200 (3%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 4 TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPRTEVLVDPLAKGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ D K K+FH R DI ++F + P+F T++A+ + + + + Sbjct: 63 FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + ++I K+ + +DWS LSD+QL YA +DV HL + L +L R GRS + + Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLSLKAELDREGRSSWLSEEMD 181 Query: 186 FLMDRAELDLL---GWENVD 202 L R D+ W+ + Sbjct: 182 ILESRETYDMHPDDAWQRLK 201 >gi|148238801|ref|YP_001224188.1| ribonuclease D [Synechococcus sp. WH 7803] gi|147847340|emb|CAK22891.1| Ribonuclease D [Synechococcus sp. WH 7803] Length = 214 Score = 242 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 94/206 (45%), Positives = 127/206 (61%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V +GD+ AE + R+ A+AVDTE +GL+ RDRLC+VQ+ V IRIA GQ Sbjct: 11 FVVLDGDLNAEWSERFAASTALAVDTEAMGLIHGRDRLCLVQICDDKDQVACIRIALGQS 70 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 AP L ++ EK+FH+ RFD+A L G+RV P+FCTK+ SRL RTYT +HGLKD Sbjct: 71 EAPRLKALMEAATIEKVFHFARFDVAALATGLGIRVNPIFCTKVGSRLARTYTPRHGLKD 130 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL+G+ + K QSSDW D+L+D QL YAA+D +L R Q L+R GR +LA Sbjct: 131 LVMELVGVELDKQAQSSDWGRVDELTDVQLAYAANDARYLLPARRQLEVMLRREGRWELA 190 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 SC + ++LD + V+ F H Sbjct: 191 QSCFQCIPVMSDLDRFRF--VNTFEH 214 >gi|49475730|ref|YP_033771.1| ribonuclease D [Bartonella henselae str. Houston-1] gi|49238537|emb|CAF27773.1| Ribonuclease D [Bartonella henselae str. Houston-1] Length = 406 Score = 242 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 3/196 (1%) Query: 1 MTTIRVHEGDIP-AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + D+ A R D + +DTE + +LC++QL+ D TV I I+ Sbjct: 23 MMKLITQTTDLEIALATLRNSDFVTIDTEFIRETTFWPQLCLIQLASPDTTVLIDPISQD 82 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++V++K K+FH R DI +++ GV P+F T+IA + + + Sbjct: 83 IDLKP-FFDLMVNKKIVKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSIC-GFGDSISY 140 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ G + K+ + +DWS LS++QL YA +DV +L + L ++L++ R+ Sbjct: 141 DQIVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRTHW 200 Query: 180 ATSCCNFLMDRAELDL 195 L++ D+ Sbjct: 201 MDDEIAVLLEPKTYDM 216 >gi|116072599|ref|ZP_01469865.1| 3'-5' exonuclease [Synechococcus sp. BL107] gi|116064486|gb|EAU70246.1| 3'-5' exonuclease [Synechococcus sp. BL107] Length = 214 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 91/206 (44%), Positives = 124/206 (60%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V +GD+ A RY+ ++AVDTE +GL+ RDRLC+VQ++ V +RI GQ Sbjct: 11 FAVFDGDLDASWTERYLQMPSLAVDTEAMGLIHGRDRLCLVQIADAQDRVACVRIGLGQS 70 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL + EK+FH+ RFD+A L + V+P+FCTK+ SRL RTYT +HGLKD Sbjct: 71 TAPNLQRLFEAASVEKVFHFARFDVAALAAGLDIAVQPLFCTKVGSRLGRTYTPRHGLKD 130 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL+G+ + K QSSDW D+L+D QL YAA+DV +L R Q L+R GR +LA Sbjct: 131 LVMELVGVELDKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNQLETMLRREGRWELA 190 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C + AELD + + F H Sbjct: 191 QRCFTCIPVIAELDRMRFNQ--TFEH 214 >gi|88807852|ref|ZP_01123363.1| putative ribonuclease D [Synechococcus sp. WH 7805] gi|88787891|gb|EAR19047.1| putative ribonuclease D [Synechococcus sp. WH 7805] Length = 214 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 95/206 (46%), Positives = 127/206 (61%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V +GD+ E + RY A+AVDTE +GL+ RDRLC+VQ+ V IRIA GQ Sbjct: 11 FVVLDGDLNEEWSERYARSTALAVDTEAMGLIHGRDRLCLVQICDDKDQVACIRIALGQT 70 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 AP L ++ EK+FH+ RFD+A L G+RV P+FCTK+ SRL RTYT +HGLKD Sbjct: 71 EAPRLKALMEATTIEKVFHFARFDVAALATGLGIRVNPLFCTKVGSRLARTYTPRHGLKD 130 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL+G+ + K QSSDW D+L+D QL YAA+D +L A R Q L+R GR +LA Sbjct: 131 LVMELVGVELDKQAQSSDWGRVDELTDVQLAYAANDARYLLAARRQLEVMLRREGRWELA 190 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 SC + ++LD + V+ F H Sbjct: 191 QSCFQCIPVMSDLDRFRF--VNTFEH 214 >gi|327194287|gb|EGE61150.1| ribonuclease III protein [Rhizobium etli CNPAF512] Length = 381 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 6/200 (3%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 4 TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ D K K+FH R DI ++F + P+F T++A+ + + + + Sbjct: 63 FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + ++I K+ + +DWS LSD+QL+YA +DV HL + L +L R GR+ T N Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLTEEMN 181 Query: 186 FLMDRAELDLL---GWENVD 202 L R D+ W+ + Sbjct: 182 ILEARETYDMHPDDAWQRLK 201 >gi|150396023|ref|YP_001326490.1| ribonuclease D [Sinorhizobium medicae WSM419] gi|150027538|gb|ABR59655.1| ribonuclease D [Sinorhizobium medicae WSM419] Length = 383 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 6/200 (3%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C I +DTE L LC++Q++ D V + +A G A Sbjct: 4 TTADLEAACRELASSSYITIDTEFLRETTFWPELCLIQMASPDMAVIVDPMAPGIDLAS- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ + K+FH R DI ++ + + P+F T++A+ + + + + Sbjct: 63 FFALMGNADVVKVFHAARQDIEIIHHLGNLIPHPLFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + I K+ + +DWS L+D+QL YA +DV HL + ++L+R GRS Sbjct: 122 IKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYHYLVQELEREGRSSWLAEEMA 181 Query: 186 FLMDRAELDL---LGWENVD 202 L +R DL W+ + Sbjct: 182 ILENRETYDLHPDNAWQRLK 201 >gi|254431401|ref|ZP_05045104.1| RNAse D protein [Cyanobium sp. PCC 7001] gi|197625854|gb|EDY38413.1| RNAse D protein [Cyanobium sp. PCC 7001] Length = 224 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 92/207 (44%), Positives = 125/207 (60%), Gaps = 5/207 (2%) Query: 4 IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V +GD+ A A Y A +AVDTE +GL+ RDRLC+VQ+ V IR+ GQ Sbjct: 15 FAVFDGDLDAGWAELYAGARALAVDTEAMGLIHGRDRLCLVQICDDADNVCCIRLRRGQS 74 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +AP+L ++ + EK+FH+ RFD+A L G+ V P+FCTKI SRL RTY+ +HGLKD Sbjct: 75 SAPHLQALMENAAIEKVFHFARFDVAALAENLGIAVHPIFCTKIGSRLARTYSPRHGLKD 134 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++EL+G+ + K QSSDW DDLS+ QL YAA DV +L R + L+R R +LA Sbjct: 135 VVQELVGVELDKRAQSSDWGEVDDLSEAQLAYAAGDVRYLLQARDRLERMLRREERWELA 194 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 C L A+LD + + F HS Sbjct: 195 QRCFTCLPVFADLDRQRFHLL--FEHS 219 >gi|190891177|ref|YP_001977719.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|190696456|gb|ACE90541.1| ribonuclease III protein [Rhizobium etli CIAT 652] Length = 381 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 6/200 (3%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 4 TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ D K K+FH R DI ++F + P+F T++A+ + + + + Sbjct: 63 FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + ++I K+ + +DWS LSD+QL+YA +DV HL + L +L R GR+ T N Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLTEEMN 181 Query: 186 FLMDRAELDLL---GWENVD 202 L R D+ W+ + Sbjct: 182 ILEARETYDMHPDDAWQRLK 201 >gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3] gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3] Length = 386 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 3/187 (1%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + C + I +DTE L LC+VQ++ V + +A G P L + Sbjct: 8 LAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDLTP-LFEL 66 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + + K+FH R DI ++++ G+ P+F T++A+ + + + ++ + + Sbjct: 67 MANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVQRIKNV 125 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 I K+ + +DWS L+++QL YA +DV HL + L +L+R GRS T + L Sbjct: 126 QIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLEREGRSLWLTEEMDILES 185 Query: 190 RAELDLL 196 R D+ Sbjct: 186 RETYDMH 192 >gi|163759179|ref|ZP_02166265.1| putative ribonuclease D [Hoeflea phototrophica DFL-43] gi|162283583|gb|EDQ33868.1| putative ribonuclease D [Hoeflea phototrophica DFL-43] Length = 383 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 7/206 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I E + A CA + + VDTE L LC++Q++ D + +A G Sbjct: 1 MDMITTTEA-LAAFCARLAAHEFVTVDTEFLRETTYWPELCLIQMAGPDDEGIVDPLAEG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ D K+FH R DI ++ + + P+F T++A+ + + Sbjct: 60 IDLKP-FFELMADTSVVKVFHAARQDIEIMVHRGDLVPHPIFDTQVAAMVC-GFGESISY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + + G +I K+ + +DWS LSD+QL YA +DV HL + L+ +L+ GRS Sbjct: 118 DQLVSRITGAHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLELLSRLKAEGRSHW 177 Query: 180 ATSCCNFLMDRAELDLL---GWENVD 202 L RA ++ W + Sbjct: 178 VADEMAVLESRATYEIEPSDAWRRLK 203 >gi|148243178|ref|YP_001228335.1| ribonuclease [Synechococcus sp. RCC307] gi|147851488|emb|CAK28982.1| Ribonuclease [Synechococcus sp. RCC307] Length = 217 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 T V +GD+ E Y A+AVDTE +GL+ RDRLC+VQ+ V IRIA G Sbjct: 10 THFAVFDGDLSPEWFGHYKNAKALAVDTEAMGLIHGRDRLCLVQICDDQDRVCCIRIARG 69 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q AP L ++ EK+FHY RFD+A + G+ V P+FCTK+ASRL RTY+ +HGL Sbjct: 70 QSEAPLLKELMEATGIEKVFHYARFDVAAMASGLGIAVNPIFCTKVASRLARTYSPRHGL 129 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + EL+G+++ K QSSDW ++LS++QL YAA+DV +L R + + L R R Sbjct: 130 AAVVSELVGVDLDKQAQSSDWGRVEELSEQQLAYAANDVRYLLPARDRLEQMLVREERWS 189 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + ++LD ++ IF H Sbjct: 190 LAQRCFLCIPVFSDLD--RFQYGSIFEH 215 >gi|126731278|ref|ZP_01747085.1| ribonuclease D [Sagittula stellata E-37] gi|126708189|gb|EBA07248.1| ribonuclease D [Sagittula stellata E-37] Length = 385 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M T+ E ++ CA A+ I VDTE L +LC++QL+ GD ++ Sbjct: 1 MQTLTTTE-ELSDFCARAKGQPYITVDTEFLRERTYYSKLCLIQLALPGKGDEDAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + L+ + DE K+FH R D+ + F GV +P+F T++A+ + + Q Sbjct: 60 MVDGLSLDPLLELFRDESIVKVFHAARQDLEIFFIDHGVIPQPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +K + + K+ + +DWS L+D Q YA +DV HL + KL+ GR Sbjct: 119 VGYETLVKRIAKQQLDKSSRFTDWSRRPLTDAQKSYALADVTHLREIYEFLAAKLEESGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 S L D W+ V S++ Sbjct: 179 SRWVAEELGVLTDPETYITRPREAWKRVKTRSNA 212 >gi|126735792|ref|ZP_01751537.1| ribonuclease D [Roseobacter sp. CCS2] gi|126714979|gb|EBA11845.1| ribonuclease D [Roseobacter sp. CCS2] Length = 385 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M TI E D+ A C A + VDTE L +LC+VQL+ G V + Sbjct: 1 MKTITTTE-DLAAFCQEAAKRAYVTVDTEFLRERTYYSKLCLVQLAYQDDSGADAVLLDP 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 + G P L + D K+FH R D+ + + GV P+F T++A+ + + Sbjct: 60 LVDGLSLEP-LYDLFKDHGVVKVFHAARQDLEIFYVDAGVIPEPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + ++++ ++ K+ + +DWS L+D Q +YA +DV HL + + +L + G Sbjct: 118 QVGYETLVRKITKSDLDKSSRFTDWSRRPLTDAQAKYALADVTHLRDIYEHLSARLAKSG 177 Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 RS L D A W+ V + S Sbjct: 178 RSKWVAEEMAVLEDPATYQADPDNAWKRVKTRTQS 212 >gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium tumefaciens str. C58] gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium tumefaciens str. C58] Length = 388 Score = 241 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 3/187 (1%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + C + I +DTE L LC+VQ++ V + +A G P + Sbjct: 8 LAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDLTPMF-EL 66 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + + K+FH R DI ++++ G+ P+F T++A+ + + + ++++ + Sbjct: 67 MANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVQKIKNV 125 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 I K+ + +DWS L+++QL YA +DV HL + L +L+R GRS T N L Sbjct: 126 QIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLWLTEEMNILES 185 Query: 190 RAELDLL 196 R D+ Sbjct: 186 RDTYDMH 192 >gi|86749614|ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2] gi|86572642|gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2] Length = 382 Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 5/207 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A I VDTE L LC+VQ++ D V + +A G Sbjct: 1 MDLISTTEQLASACTRLASHPVITVDTEFLRETTYYPLLCVVQMASRDEAVVVDTLAPGI 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P ++ +E K+FH R DI ++++ G+ P+F T++A+ + Y + Sbjct: 61 DLKP-FFDLMANENVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ + G K + +DWS L+DEQL YA SDV HL + L++ GRSD Sbjct: 119 QLVERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLRDVFAALDADLKQRGRSDWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVDIF 204 + L D WE + Sbjct: 179 SEEMEVLTSPKTYDFHPESAWERLKTR 205 >gi|329850483|ref|ZP_08265328.1| ribonuclease D [Asticcacaulis biprosthecum C19] gi|328840798|gb|EGF90369.1| ribonuclease D [Asticcacaulis biprosthecum C19] Length = 417 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 8/205 (3%) Query: 1 MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 MT I + D+ A C A + I VDTE + +LC++Q + D I +A Sbjct: 1 MTPI-TNTNDLIAFCEAIKSAPFITVDTEFMRETTYWPKLCLIQAASEDHAAIIDPLAKS 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P L +L DEK K+FH R D+ + G P+F T++A+ + Y +Q Sbjct: 60 LDLKPFL-DILADEKILKVFHACRQDMEIFVN-LGTMPMPIFDTQVAA-MAAGYGDQVAY 116 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 +++ L I+I K + +DWS LSD+QLQYA DV HL L + ++L R GR + Sbjct: 117 DSLVRQKLKIDIDKGSRFTDWSRRPLSDQQLQYALGDVTHLAKLYPKLRDRLAREGRLEW 176 Query: 180 ATSCCNFLMDRAELDLL---GWENV 201 ++ L W + Sbjct: 177 VSAEMVDLCAPELYSTNPEDAWRRL 201 >gi|72382995|ref|YP_292350.1| putative ribonuclease D [Prochlorococcus marinus str. NATL2A] gi|72002845|gb|AAZ58647.1| 3'-5' exonuclease [Prochlorococcus marinus str. NATL2A] Length = 214 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 85/208 (40%), Positives = 125/208 (60%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 +T + + DI +E A R A+AVDTE +GL+ RDRLC++Q+ V IRI Sbjct: 9 STFNIFDQDIDSETEIALRSSSALAVDTEAMGLIHGRDRLCLIQICDEFDNVICIRIERN 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q +AP+L +L ++ EK+FH+ RFD+A L + V P+FCTKIAS++ RTY+ +HGL Sbjct: 69 QHSAPHLKSILENKTIEKVFHFARFDVAALASNLNINVNPIFCTKIASKIGRTYSPRHGL 128 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K+ + E +G+ + K QSSDW DL+ +QL YA++DV +L + + E L+R R Sbjct: 129 KEVVLETVGVELDKQAQSSDWGKVGDLTQKQLIYASNDVRYLLGAKHKLEEMLKREERWG 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + +ELD + N IF H Sbjct: 189 LAQKCFQCVPVLSELDRRRFTN--IFDH 214 >gi|254439069|ref|ZP_05052563.1| ribonuclease D [Octadecabacter antarcticus 307] gi|198254515|gb|EDY78829.1| ribonuclease D [Octadecabacter antarcticus 307] Length = 395 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M TI ++ CA A + VDTE L +LC++QL+ GD ++ Sbjct: 11 MKTITTT-AELATYCAQAAKYPYVTVDTEFLRERTYYSKLCLIQLAYMGDGDDDAVLLDP 69 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A + L + DE K+FH R D+ + F G+ +P+F T++A+ + + Q Sbjct: 70 LANGLDLAPLYDLFKDENVVKVFHAARQDLEIFFVDQGIIPKPLFDTQVAAMVC-GFGEQ 128 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ N+ K+ + +DWS LSD Q YA +DV HL + + +L + GR Sbjct: 129 AGYETLVRKIAKDNVDKSSRFTDWSRRPLSDAQKTYALADVTHLRVIYEYLSAELDKSGR 188 Query: 177 SDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 L D A W+ V + S Sbjct: 189 KKWVAEEMAVLNDPATYQADPDNAWKRVKTRTSS 222 >gi|46202610|ref|ZP_00208583.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1] Length = 398 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 7/211 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I E + A C + + VDTE + +LC+VQ++ D I +A G Sbjct: 1 MPMISDTES-LAAFCRRLKSAPFVTVDTEFMREKTYWPQLCLVQVAGPDEARAIDPLAPG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P L ++ D K+FH R D+ + + P+F T+IA+ + + + G Sbjct: 60 MDLTP-LFELMADTNVLKVFHAARQDVEIFLHLADAIPTPIFDTQIAAMVC-GFGDSVGY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + +L I K+ + +DWS LS++Q+QYA +DV HL + KL+R GR + Sbjct: 118 ETLASQLAKARIDKSMRFTDWSIRPLSEKQIQYALADVTHLRVAYEKLVRKLERNGRIEW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIFSHS 207 + L + + W + S S Sbjct: 178 LSEEMALLTEPGTYRVDPENAWRRLKPRSTS 208 >gi|110679520|ref|YP_682527.1| ribonuclease D [Roseobacter denitrificans OCh 114] gi|109455636|gb|ABG31841.1| ribonuclease D [Roseobacter denitrificans OCh 114] Length = 387 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M TI + + C A D + VDTE L +LC++QL+ D T I+ Sbjct: 1 MKTITTTQA-LAEFCTQAAQFDYVTVDTEFLRERTYYSKLCLIQLAMPGEDDSTGCIVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A + L + D K+FH R D+ + + V P+F T++A+ + + Q Sbjct: 60 LAPGLSLEPLYALFRDTSVVKVFHAARQDLEIFYVDAEVFPEPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++ + + K + +DWS L+D Q++YA +DV HL + EKL+ GR Sbjct: 119 VGYETLVRRIAKKPLDKTSRFTDWSRRPLTDAQMKYALADVTHLREVYEFLAEKLEETGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 S L + W V ++S Sbjct: 179 SRWVREELTVLTSPETYIIAPMDAWRRVKTRTNS 212 >gi|255261512|ref|ZP_05340854.1| ribonuclease D [Thalassiobium sp. R2A62] gi|255103847|gb|EET46521.1| ribonuclease D [Thalassiobium sp. R2A62] Length = 385 Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M TI + ++ A C A + VDTE L +LC++QL+ GD ++ Sbjct: 1 MITITTTQ-ELAAFCQEAAAHPYVTVDTEFLRERTYYSKLCLIQLAYPGEGDENAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + +L + D K+FH R D+ + F G+ P+F T++A+ + + Q Sbjct: 60 LEDGLSLASLYDLFRDPNVVKVFHAARQDLEIFFVDEGIIPAPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ + K+ + +DWS LSD Q +YA DV +L + +KL + R Sbjct: 119 VGYETLVRKIAKAPLDKSSRFTDWSRRPLSDAQKKYALGDVTYLREIYEFLADKLAKNNR 178 Query: 177 SDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 + L + W + ++S Sbjct: 179 AKWVAEEMAVLNAPKTYRVEPSEAWMRIKTRTNS 212 >gi|319405613|emb|CBI79236.1| Ribonuclease D [Bartonella sp. AR 15-3] Length = 383 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 3/193 (1%) Query: 4 IRVHEGDIP-AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + D+ A A R + + VDTE + +LC++Q++ D T+ I +A Sbjct: 3 LITNTIDLEIAIAALRKSNFVTVDTEFIRETTFWPQLCLIQVASSDVTILIDPMAQDINL 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 P +++D+K K+FH R DI ++++ GV P+F T++A + + + Sbjct: 63 QP-FFDLMIDKKIVKVFHAARQDIEIIYHLGGVIPSPLFDTQVAGSIC-GFGDSISYDQI 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ G ++ K+ + +DWS LS++QL YA +DV +L + L ++L+ R+ Sbjct: 121 VQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLREVYLVLKKQLEEKKRTHWMND 180 Query: 183 CCNFLMDRAELDL 195 L+ D+ Sbjct: 181 EMAILLTPTTYDI 193 >gi|254461790|ref|ZP_05075206.1| ribonuclease D [Rhodobacterales bacterium HTCC2083] gi|206678379|gb|EDZ42866.1| ribonuclease D [Rhodobacteraceae bacterium HTCC2083] Length = 385 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 9/213 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M TI E + C A+ + VDTE L +LC+VQL+ D ++ Sbjct: 1 MLTITTTEA-LAEFCEEAKKHAYVTVDTEFLRERTYYSKLCLVQLAMPGTDDSNGCLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + L + D K+FH R DI + GV P+F T++AS + + Q Sbjct: 60 LVEGISLEPLYDLFRDTSVVKVFHAARQDIEIFQVDAGVIPTPLFDTQVASMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ I K+ + +DWS LSD Q +YA +DV HL + +KL+ GR Sbjct: 119 VGYETLVRKIAKQEIDKSSRFTDWSRRPLSDAQAKYALADVTHLRQVYEFLAKKLKDQGR 178 Query: 177 SDLATSCCNFLMDR---AELDLLGWENVDIFSH 206 S L + L W+ V I ++ Sbjct: 179 SHWVDEEMKILNNPDTYITLPENAWKRVKIRNN 211 >gi|163868507|ref|YP_001609716.1| hypothetical protein Btr_1359 [Bartonella tribocorum CIP 105476] gi|161018163|emb|CAK01721.1| Ribonuclease D [Bartonella tribocorum CIP 105476] Length = 384 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 3/196 (1%) Query: 1 MTTIRVHEGDIP-AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + D+ A A R D + VDTE + +LC++QL+ D TV I IA Sbjct: 1 MMNLITQTTDLEIALNALRNSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAPD 60 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P +++D+K K+FH R DI ++Y GV P+F T+IA + + + Sbjct: 61 IDLQP-FFDLMIDKKIVKVFHSARQDIETIYYLGGVIPSPLFDTQIAGSIC-GFGDSISY 118 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ G ++ K+ + +DWS LS++QL YA +DV +L + L ++L++ R+ Sbjct: 119 DQIVQHCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRTHW 178 Query: 180 ATSCCNFLMDRAELDL 195 L++ D+ Sbjct: 179 MDDEVTILLNPKTYDM 194 >gi|294084191|ref|YP_003550949.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322] gi|292663764|gb|ADE38865.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322] Length = 409 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 4 IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + D+ R +A+DTE + +LC++Q+ G V I +A Sbjct: 30 LITTNADLLRVVDEFRGKPFLAIDTEFMRERTYYPQLCLIQVGDGTKAVAIDPLAKNLNL 89 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 P L ++ DE K+FH G D+ + G PV+ T+IA L + +Q G Sbjct: 90 EP-LWSLMRDESIIKVFHAGNQDMEIFLNEMGGLPSPVYDTQIAG-LVCGHGDQIGYDSL 147 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +K +LG N+ K + +DWS L+D Q+ YA DV++L + +K+ R++ Sbjct: 148 VKSILGKNVDKTSRFTDWSKRPLTDRQISYALDDVIYLAQIYPIMLDKIASENRTNWLDE 207 Query: 183 CCNFLMDRAEL---DLLGWENVDIFS 205 D A W+ + I Sbjct: 208 EFKKFSDPATYVTKPENAWKRIKIRH 233 >gi|49474343|ref|YP_032385.1| ribonuclease D [Bartonella quintana str. Toulouse] gi|49239847|emb|CAF26240.1| Ribonuclease D [Bartonella quintana str. Toulouse] Length = 404 Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 3/196 (1%) Query: 1 MTTIRVHEGDIP-AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + D+ A A R D + VDTE + +LC++QL+ D T+ I +A Sbjct: 21 MMRLITQTTDLEIALAALRPSDFVTVDTEFIRETTFWPQLCLIQLASPDVTMLIDPMAQD 80 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++VDEK K+FH R DI ++++ GV P+F T+IA + + + Sbjct: 81 MDLKP-FFDLMVDEKIVKVFHAARQDIEIIYHLGGVIPYPLFDTQIAGSIC-GFGDSISY 138 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ G + K+ + +DWS LS++QL YA +DV +L + L ++L++ R Sbjct: 139 DQIVQRCTGHQLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRMHW 198 Query: 180 ATSCCNFLMDRAELDL 195 L D+ Sbjct: 199 MDDEITTLSTPKTYDI 214 >gi|92117640|ref|YP_577369.1| ribonuclease D [Nitrobacter hamburgensis X14] gi|91800534|gb|ABE62909.1| ribonuclease D [Nitrobacter hamburgensis X14] Length = 396 Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I ++ + CA + VDTE L LC+VQ++ D V + +A G Sbjct: 15 MDLITTT-AELASVCARLANYPVVTVDTEFLRETTYYPLLCVVQMASPDEAVVVDALAEG 73 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ +E+ K+FH R DI ++++ G+ P+F T++A+ + Y + Sbjct: 74 IDLKP-FFDLMSNERVLKVFHAARQDIEIVWHQAGIIPHPIFDTQVAAMVL-GYGDSIAY 131 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ + G K + +DWS L+ +QL+YA +DV HL + L++ GR D Sbjct: 132 DALVERVNGHRPDKTHRFTDWSRRPLTKDQLEYAVADVTHLRDVFAALDADLKKRGRGDW 191 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + L D WE + Sbjct: 192 VSEEMEVLTSPKTYDFHPERAWERLKTR 219 >gi|85717198|ref|ZP_01048155.1| ribonuclease D [Nitrobacter sp. Nb-311A] gi|85695978|gb|EAQ33879.1| ribonuclease D [Nitrobacter sp. Nb-311A] Length = 420 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I ++ + CA I VDTE L LC++Q++ D + I +A G Sbjct: 39 MDLITTT-AELASVCARFAKHPVITVDTEFLRETTYYPLLCVIQMASPDEAIAIDALAEG 97 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 ++ +E K+FH R DI ++++ G+ PVF T++A+ + Y + Sbjct: 98 IDLNS-FFTLMSNEGVLKVFHAARQDIEIIWHQAGIIPHPVFDTQVAAMVL-GYGDSIAY 155 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ + G K + +DWS L+ EQL+YA +DV HL + L++ GRSD Sbjct: 156 DALVERVTGHRPDKTHRFTDWSRRPLTAEQLEYAVADVTHLRDVFAALDVDLRKRGRSDW 215 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + L D WE + Sbjct: 216 VSEEMEILTSPKTYDFHPERAWERLKTR 243 >gi|146340329|ref|YP_001205377.1| ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278] gi|146193135|emb|CAL77147.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278] Length = 389 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I D+ A CA I VDTE L LC+VQ++ D V I +A G Sbjct: 8 MDLITTT-ADLAAACARLAQHPVITVDTEFLRETTYYPLLCVVQMASQDEAVVIDALAEG 66 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + ++ +EK K+FH R DI ++++ G+ P+F T++A+ + Y + Sbjct: 67 I-DLKAFFELMANEKVLKVFHAARQDIEIIWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 124 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ + G K + +DWS L+ EQ YA +DV HL + L++ GRSD Sbjct: 125 DQLVERITGHRPDKTHRFTDWSRRPLTKEQAHYAEADVTHLRDVFAALDTDLKKRGRSDW 184 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + L D WE + Sbjct: 185 VSEEMEILTSPKTYDFHPERAWERLKTR 212 >gi|115525280|ref|YP_782191.1| ribonuclease D [Rhodopseudomonas palustris BisA53] gi|115519227|gb|ABJ07211.1| ribonuclease D [Rhodopseudomonas palustris BisA53] Length = 392 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I E + A CA I VDTE L LC+VQ++ D V I +A G Sbjct: 1 MDLITTSE-QLAAACARFAKQPVITVDTEFLRETTYYPLLCVVQIASADEAVVIDSLAPG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ DE K+FH R DI ++++ G+ P+F T++A+ + Y + Sbjct: 60 IDLKP-FFELMADEHVLKVFHAARQDIEIVWHRAGILPHPIFDTQVAAMVL-GYGDSIAY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ + G K + +DWS L++EQ+ YA SDV HL + L++ GRSD Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLTEEQVHYAVSDVTHLRDVFAALDADLKKRGRSDW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + L D WE + Sbjct: 178 VSEEMEILTSPKTYDFHPERAWERLKTR 205 >gi|218461991|ref|ZP_03502082.1| RNase D protein [Rhizobium etli Kim 5] Length = 293 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 6/200 (3%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 4 TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ D K K+FH R DI ++F + P+F T++A+ + + + + Sbjct: 63 FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 ++I K+ + +DWS LSD+QL+YA +DV HL + L + +L R GR+ + Sbjct: 122 SKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLSSQLDREGRTSWLREEMD 181 Query: 186 FLMDRAELDLL---GWENVD 202 L R D+ W+ + Sbjct: 182 VLEARETYDMHPDDAWQRLK 201 >gi|123967004|ref|YP_001012085.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515] gi|123201370|gb|ABM72978.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515] Length = 213 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 87/206 (42%), Positives = 124/206 (60%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I ++ DI Y D +AVDTE +GL+ RDRLC++Q+S I+I Sbjct: 10 ITLYNNDITQNLYNIYKDSSYLAVDTEAMGLIHGRDRLCLIQISNEFHLTSCIKIELNNS 69 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 ++P++ + D K KIFHY RFD+A L + +FCTKIAS+L RTYT++HGLK+ Sbjct: 70 DSPHIKKLFEDNKIMKIFHYARFDVAALKCNLNINTNNIFCTKIASKLARTYTHKHGLKE 129 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL+GI + K+ QSSDW + +DLSD+Q+ YAA+DV +L + L+R GR DLA Sbjct: 130 LIHELIGIELDKSSQSSDWGSCEDLSDKQIDYAANDVKYLIEAMRKLRIILEREGRYDLA 189 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C + +ELD+L + N IF H Sbjct: 190 QKCFQTIPVHSELDILKFSN--IFEH 213 >gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens] Length = 388 Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 3/187 (1%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + C + I DTE L LC+VQ++ V + +A G P + Sbjct: 8 LAEACTELAKSEFITTDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDLTPMF-EL 66 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + + K+FH R DI ++++ G+ P+F T++A+ + + + ++++ + Sbjct: 67 MANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVQKIKNV 125 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 I K+ + +DWS L+++QL YA +DV HL + L +L+R GRS T N L Sbjct: 126 QIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLWLTEEMNILES 185 Query: 190 RAELDLL 196 R D+ Sbjct: 186 RDTYDMH 192 >gi|167646508|ref|YP_001684171.1| ribonuclease D [Caulobacter sp. K31] gi|167348938|gb|ABZ71673.1| ribonuclease D [Caulobacter sp. K31] Length = 389 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 6/188 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + +LC++Q++ D I +A G P L+ +L D Sbjct: 17 LKGQPFIAVDTEFMRETTYWPKLCLIQVASPDIEACIDPLAEGMDLEP-LLEILRDPGVL 75 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH R D+ + P+F T++A + + Q ++++L I + K+ + Sbjct: 76 KVFHAARQDVEIF-NNLNAMPTPLFDTQVAG-MAAGFGEQIAYDALVRQMLKIELDKSSR 133 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL- 195 +DW+ LSD QL YA +DV HL L E+L++ GR L D A D+ Sbjct: 134 FTDWARRPLSDAQLTYAVADVTHLATLFPILRERLEKAGRLAWVEEEMKALNDPAAYDVD 193 Query: 196 --LGWENV 201 W + Sbjct: 194 PEKAWRRL 201 >gi|91977418|ref|YP_570077.1| ribonuclease D [Rhodopseudomonas palustris BisB5] gi|91683874|gb|ABE40176.1| ribonuclease D [Rhodopseudomonas palustris BisB5] Length = 392 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I E + C I VDTE L LC+VQ++ D V + +A G Sbjct: 1 MDLISTTE-QLADVCTRLASHPVITVDTEFLRETTYYPLLCVVQMASPDEAVVVDTLAPG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ +E K+FH R DI ++++ G+ P+F T++A+ + Y + Sbjct: 60 IDLKP-FFDLMANENVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ + G K + +DWS L+DEQL YA SDV HL + L++ RSD Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLRDVFAALDADLKKRDRSDW 177 Query: 180 ATSCCNFLMDRAELDLL---GWENVDIF 204 + L D WE + Sbjct: 178 VSEEMEILTSPKTYDFHPESAWERLKTR 205 >gi|297184397|gb|ADI20513.1| ribonuclease d [uncultured alpha proteobacterium EB080_L58F04] Length = 387 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG----DGTVDIIRI 56 M TI + I AA+ D + +DTE L +LC++QL+ D V + + Sbjct: 1 MKTITKTDELIAFCEAAKAFDYVTIDTEFLRERTYYSKLCLIQLAVPGKGDDHAVLVDPL 60 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A G K L + DE K+FH R D+ + GV +P+F T++A+ + + Q Sbjct: 61 AHGLK-LDALYALFEDETVVKVFHAARQDLEIFCVDAGVLPKPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ +I K+ + +DWS L++ Q YA +DV HL + K+++ GR Sbjct: 119 VGYETLVRKITKNSIDKSSRFTDWSRRPLTEAQKSYALADVTHLRQVYEFLRAKIEKTGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 L + + W V + S Sbjct: 179 GPWVEEELQILTNPETYRVRPSEAWRRVKTRTSS 212 >gi|329890110|ref|ZP_08268453.1| ribonuclease D [Brevundimonas diminuta ATCC 11568] gi|328845411|gb|EGF94975.1| ribonuclease D [Brevundimonas diminuta ATCC 11568] Length = 384 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT I ++ I I VDTE + +LC++Q + II A Sbjct: 1 MTPITTNDALIAFCERLAKAPYITVDTEFMRETTYWPKLCLIQAAASPTDAAIIDPMAEG 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + + +L DE K+FH R D+ + G RP+F T++A+ + + +Q + Sbjct: 61 LDLEPFLDILRDESILKVFHAARQDVEIF-NKLGAMPRPLFDTQVAA-MAAGFGDQVSYE 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++L + K + +DW+ LSD QL YA DV HL AL + ++LQ+ GR D Sbjct: 119 ALVRQMLRQELDKGSRFTDWARRPLSDAQLTYALGDVTHLSALYPKLRDRLQKEGRLDWV 178 Query: 181 TSCCNFLMDRAELDL---LGWENVD 202 S + D A D W+ + Sbjct: 179 MSEMGAVTDPALYDTSPENAWKRLK 203 >gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1] gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1] Length = 392 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 8/211 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 MT I ++ A CA + +AVDTE + +LC++Q + I +A Sbjct: 1 MTPITTT-AELEAFCAKLKGQPFVAVDTEFMRETTYWPKLCLIQAAAPSAEAVIDPLADD 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + + +L DE +K+FH R D+ + G +P+F T++A + + Q Sbjct: 60 I-DLSCFLDILRDESIQKVFHAARQDVEIF-NNLGAMPKPLFDTQVAG-MAAGFGEQIAY 116 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++++L I I K+ + +DW+ LSD QL YA +DV HL L ++L+R GR Sbjct: 117 DALVRQMLKIEIDKSSRFTDWARRPLSDSQLTYALADVTHLAKLYPLLRQRLEREGRLAW 176 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIFSHS 207 T N L D A D+ W+ + H+ Sbjct: 177 VTDEMNDLTDPANYDVEPENAWKRLRPRRHT 207 >gi|319404161|emb|CBI77754.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498] Length = 383 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 5/191 (2%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 A R + + VDTE + +LC++Q++ D T+ I +A P +++D+K Sbjct: 15 AALRKSNFVTVDTEFIRKTTFWPQLCLIQVASPDITILIDPMAQDINLQP-FFDLMIDKK 73 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+FH R DI ++++ G+ P+F T++A + + + ++ G ++ K+ Sbjct: 74 VVKVFHAARQDIEIIYHLGGIIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLDKS 132 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 + +DWS LS++QL YA SDV +L + L ++L+ R+ L+ D Sbjct: 133 SRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRTHWMHDEMALLLTPTTYD 192 Query: 195 L---LGWENVD 202 + W+ V Sbjct: 193 IPENEAWKKVK 203 >gi|149202482|ref|ZP_01879454.1| ribonuclease D [Roseovarius sp. TM1035] gi|149143764|gb|EDM31798.1| ribonuclease D [Roseovarius sp. TM1035] Length = 386 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 10/215 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M TI + D+ A CA AR + +DTE L +LC++Q++ D V + Sbjct: 1 MKTITTTD-DLAAFCAMARKHPYVTLDTEFLRERTYYSKLCLLQMAVPGADDDTAVLVDP 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 I + + L + D K+FH R D+ + GV P+F T++A+ + + Sbjct: 60 IDGAEMSMEPLYELFRDTSVVKVFHAARQDLEIFHVDAGVIPDPLFDTQVAAMVC-GFGE 118 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + +K + + K+ + +DWS L++ Q YA +DV HL + +KL G Sbjct: 119 QVGYETLVKRIAKQTVDKSSRFTDWSRRPLTEAQKVYALADVTHLRVIYEYLAKKLASSG 178 Query: 176 RSDLATSCCNFLMDRAEL---DLLGWENVDIFSHS 207 R + L D A W+ V + S Sbjct: 179 RDKWVAEELSVLTDPATYRTDPADAWQRVKTRNTS 213 >gi|163735131|ref|ZP_02142567.1| ribonuclease D [Roseobacter litoralis Och 149] gi|161391589|gb|EDQ15922.1| ribonuclease D [Roseobacter litoralis Och 149] Length = 387 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M TI + + C A D + VDTE L +LC++QL+ D T I+ Sbjct: 1 MKTITTTQA-LEEFCTQAAQFDYVTVDTEFLRERTYYSKLCLIQLAMPGEDDSTGCIVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + L + D K+FH R D+ + + V P+F T++A+ + + Q Sbjct: 60 LVPGLSLEPLYALFRDTSVVKVFHAARQDLEIFYVDAEVFPEPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++ + + K + +DWS L+D Q++YA +DV HL + EKL+ GR Sbjct: 119 VGYETLVRRIAKQPLDKTSRFTDWSRRPLTDAQMKYALADVTHLRDVYEFLAEKLEETGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 S L + W V ++S Sbjct: 179 SRWVREELTVLTSPETYIIPPMDAWRRVKTRTNS 212 >gi|296536446|ref|ZP_06898543.1| ribonuclease D [Roseomonas cervicalis ATCC 49957] gi|296263225|gb|EFH09753.1| ribonuclease D [Roseomonas cervicalis ATCC 49957] Length = 394 Score = 237 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 91/203 (44%), Gaps = 7/203 (3%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I E + CA R + VDTE + LC+VQL+ + I A G Sbjct: 15 ITTTEA-LAELCARLRTEPFVTVDTEFMRERTYWPELCVVQLAGAEDVAVIDAQAEGLDL 73 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 AP L +L D K K+FH R D+ + FG RP+F T+IA+ + + +Q Sbjct: 74 AP-LGELLADPKVTKVFHAARQDVEICILRFGAPPRPLFDTQIAAMVA-GFGDQASYDSL 131 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ L G I KA + SDW+A LS Q+ YAA+DV HL + E+L + GR Sbjct: 132 VRALAGAQIDKAHRFSDWAARPLSPAQINYAAADVTHLRRVYTALVERLTQEGRLSWVAE 191 Query: 183 CCNFLMDRAEL---DLLGWENVD 202 L D A WE + Sbjct: 192 EMAELTDPATYRQDPETAWERLK 214 >gi|83942499|ref|ZP_00954960.1| ribonuclease D [Sulfitobacter sp. EE-36] gi|83846592|gb|EAP84468.1| ribonuclease D [Sulfitobacter sp. EE-36] Length = 385 Score = 237 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M TI ++ A C A D + VDTE L +LC++QL+ D ++ Sbjct: 1 MKTITTT-AELEAYCTEAAKHDYVTVDTEFLRERTYYSKLCLIQLAMPGTDDSNAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + + L + D K+FH R D+ + + GV P+F T++A+ + + Q Sbjct: 60 LSEGLSLDPLYTLFRDTSVVKVFHAARQDLEIFYVDAGVFPEPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ + K + +DWS LSD Q +YA +DV HL + KL++ GR Sbjct: 119 VGYETLVRKIAHQPLDKTSRFTDWSRRPLSDAQAKYALADVTHLRQIYEFLARKLEQTGR 178 Query: 177 SDLATSCCNFLMDRAEL---DLLGWENVDIFSHS 207 + L W V ++S Sbjct: 179 ARWVQEELEILTSPDTYVTPPREAWRRVKTRTNS 212 >gi|78780061|ref|YP_398173.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9312] gi|78713560|gb|ABB50737.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9312] Length = 211 Score = 237 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 89/208 (42%), Positives = 124/208 (59%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I D+ A+ + +A+DTE +GL+ RDRLC+VQ+ I+I Sbjct: 6 KNIDFLYSDLTADLYNIYKKSSYLAIDTEAMGLIHGRDRLCLVQICNELRRTACIKIELN 65 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + +APNL +L DEK KIFHY RFD+A L G+ + +FCTKIAS+L RTYTN+HGL Sbjct: 66 RSSAPNLKALLEDEKITKIFHYARFDVAALKCNLGINTKNIFCTKIASKLARTYTNKHGL 125 Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 KD + ELLG+ + K+ QSSDW S +DL+ +QL YA++DV +L + L R R + Sbjct: 126 KDLINELLGVELDKSSQSSDWGSKEDLTKDQLDYASNDVRYLIEAMHKLKVILDRENRYE 185 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + A+LD+L + N IF H Sbjct: 186 LAQKCFKTVSVHADLDILKFSN--IFEH 211 >gi|85702967|ref|ZP_01034071.1| ribonuclease D [Roseovarius sp. 217] gi|85671895|gb|EAQ26752.1| ribonuclease D [Roseovarius sp. 217] Length = 386 Score = 237 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 7/198 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPG----DGTVDIIR 55 M TI E D+ CA AR + VDTE L +LC++QL+ D V + Sbjct: 1 MKTITTTE-DLAEFCAMARTHSYVTVDTEFLRERTYYSKLCLLQLAVPGKGDDSAVLVDP 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 I + L + D K+FH R D+ + + GV P+F T++A+ + + Sbjct: 60 IEGEDMSMEPLYELFRDTSVVKVFHAARQDLEIFYVDAGVIPDPMFDTQVAAMVC-GFGE 118 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + +K + + K+ + +DWS L+D Q YA +DV HL + +KL G Sbjct: 119 QVGYETLVKRIAKQTVDKSSRFTDWSRRPLTDAQKTYALADVTHLRVVYEFLAKKLASSG 178 Query: 176 RSDLATSCCNFLMDRAEL 193 R + L D A Sbjct: 179 RDKWVAEELSVLTDPATY 196 >gi|148255258|ref|YP_001239843.1| ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1] gi|146407431|gb|ABQ35937.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1] Length = 384 Score = 237 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I D+ A CA I VDTE L LC+VQ++ D + I +A G Sbjct: 1 MDLITTT-ADLSAACARLAQHPVITVDTEFLRETTYYPLLCVVQMASPDEALVIDALAEG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + + ++ +EK K+FH R DI ++++ + P+F T++A+ + Y + Sbjct: 60 I-DLTSFFELMANEKVLKVFHAARQDIEIIWHRANIVPHPIFDTQVAAMVL-GYGDSIAY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ + G K + +DWS LS EQ+ YA +DV HL + L++ GRSD Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLSKEQVHYAEADVTHLRDVFAALDADLKKRGRSDW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + L D WE + Sbjct: 178 VSEEMEILTSPRTYDFHPERAWERLKTR 205 >gi|260426693|ref|ZP_05780672.1| ribonuclease D [Citreicella sp. SE45] gi|260421185|gb|EEX14436.1| ribonuclease D [Citreicella sp. SE45] Length = 385 Score = 237 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 7/213 (3%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRIA 57 M TI E AA + VDTE L +LC++QL+ GD ++ Sbjct: 1 MKTITTTEDLAAFCQAAAKAPYVTVDTEFLRERTYYSKLCLIQLAFPGKGDENAVLVDPL 60 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + L+ + + K+FH R D+ + F GV P+F T++A+ + + Q Sbjct: 61 VDGLDLEPLLELFRNTAVVKVFHAARQDLEIFFIDHGVIPDPLFDTQVAAMVC-GFGEQV 119 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G + +K + + K+ + +DWS L++ Q +YA +DV HL + +L+R GR+ Sbjct: 120 GYETLVKRIAKQALDKSSRFTDWSRRPLTEAQKKYALADVTHLRVIYEYLAAELERTGRA 179 Query: 178 DLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 L D W+ V S S Sbjct: 180 RWVAEELAVLTDPETYITRPEDAWQRVKTRSSS 212 >gi|254473302|ref|ZP_05086699.1| ribonuclease D [Pseudovibrio sp. JE062] gi|211957418|gb|EEA92621.1| ribonuclease D [Pseudovibrio sp. JE062] Length = 405 Score = 237 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 5/207 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A D + VDTE L +LC++Q++ D V + +A Sbjct: 1 MKMITTTEELAQACAKLANSDFVTVDTEFLRETTFWPKLCVIQIANPDHAVLVDALAEDL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P ++ + K+FH R DI ++++ G P+F +++A+ + + + Sbjct: 61 DLEP-FFALMRNTDIVKVFHAARQDIEIIYHLGGFVPSPLFDSQVAAMVC-GFGDSVSYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++ G I K+ + +DWS L+++QL YA +DV HL + L ++L++ GRS Sbjct: 119 QLVSKVTGERIDKSSRFTDWSRRPLTNKQLAYALADVTHLREVYLFLKKQLEQKGRSHWV 178 Query: 181 TSCCNFLMDRAEL---DLLGWENVDIF 204 L W+ + + Sbjct: 179 EDEMATLSSIDTYRSDPAKAWQRMKLR 205 >gi|148284142|ref|YP_001248232.1| ribonuclease D [Orientia tsutsugamushi str. Boryong] gi|146739581|emb|CAM79331.1| ribonuclease D [Orientia tsutsugamushi str. Boryong] Length = 210 Score = 237 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 94/210 (44%), Positives = 127/210 (60%), Gaps = 9/210 (4%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-------DGTVDIIRI 56 I + DIP +A+DTET+GL RDRLC++Q D V +++ Sbjct: 3 IHIFINDIPDNLM--ISGDLAIDTETMGLNFARDRLCLLQFCQESKDDNIDDKEVFLVKF 60 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 Q N+ NL +L+D R KIFH+ RFD+A + Y GV + +FCT +AS+L RTYT+ Sbjct: 61 EDQQYNSHNLKKLLMDCSRTKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDS 120 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 HGLKD +ELLGI ISK QSSDW L+ +Q +YAA DVV+LH ++ E L R R Sbjct: 121 HGLKDLCRELLGIQISKQCQSSDWGRQSLTSDQEEYAAKDVVYLHRIKNILEEMLIREHR 180 Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206 D+A FL RAELD++GW+++DI SH Sbjct: 181 LDIAQKIFKFLPARAELDVIGWQDIDILSH 210 >gi|114767452|ref|ZP_01446239.1| ribonuclease D [Pelagibaca bermudensis HTCC2601] gi|114540462|gb|EAU43543.1| ribonuclease D [Roseovarius sp. HTCC2601] Length = 385 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRI 56 M TI E D+ A C+ A + VDTE L +LC++QL+ GD ++ Sbjct: 1 MKTITSTE-DLAAFCSEAATAPYVTVDTEFLRERTYYSKLCLIQLAYPGQGDENAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 AG+ + L+ + + K+FH R D+ + F GV P+F T++A+ + + Q Sbjct: 60 LAGELSLEPLLELFRNTNVVKVFHAARQDLEIFFIDHGVIPDPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +K + + K+ + +DWS L+D Q +YA +DV HL + +L+R GR Sbjct: 119 VGYETLVKRIAKQGLDKSSRFTDWSRRPLTDAQKKYALADVTHLRVIYEYLAAELERTGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 + L D W+ V S S Sbjct: 179 ARWVAEELGVLTDPETYITRPQDAWQRVKTRSSS 212 >gi|83953718|ref|ZP_00962439.1| ribonuclease D [Sulfitobacter sp. NAS-14.1] gi|83841663|gb|EAP80832.1| ribonuclease D [Sulfitobacter sp. NAS-14.1] Length = 385 Score = 237 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M TI ++ A C A D + VDTE L +LC++QL+ D ++ Sbjct: 1 MKTITTT-AELEAYCTEAAKHDYVTVDTEFLRERTYYSKLCLIQLAMPGTDDSNAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + + L + D K+FH R D+ + + GV P+F T++A+ + + Q Sbjct: 60 LSEGLSLDPLYTLFRDTSVVKVFHAARQDLEIFYVDAGVFPEPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ + K + +DWS LSD Q +YA +DV HL + KL++ GR Sbjct: 119 VGYETLVRKIAHQPLDKTSRFTDWSRRPLSDAQAKYALADVTHLRQIYEFLARKLEQTGR 178 Query: 177 SDLATSCCNFLMDRAEL---DLLGWENVDIFSHS 207 + L W V ++S Sbjct: 179 ARWVQEELEILTSPDTYVTPPREAWRRVKTRTNS 212 >gi|33862140|ref|NP_893701.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634358|emb|CAE20043.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 213 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 84/208 (40%), Positives = 120/208 (57%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I DI + + +AVDTE +GL+ RDRLC++Q+ I+I Sbjct: 8 KKINFSHNDINTDLYNLYKDSSYLAVDTEAMGLIHGRDRLCLIQICNELNLTACIKIELN 67 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 ++PN+ + D+ KIFHY RFD+A L + R +FCTKIAS+L RTYTN+HGL Sbjct: 68 NSDSPNIKKLFEDKNIMKIFHYARFDVAALRCNLEINTRNIFCTKIASKLARTYTNKHGL 127 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 KD + ELL + + K+ QSSDW + +DLS++Q+ YAA+DV +L + L R GR + Sbjct: 128 KDLINELLEVELDKSSQSSDWGSLEDLSNKQIDYAANDVRYLIETMHKLKLILDREGRYE 187 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + +ELD+L + N IF H Sbjct: 188 LAQKCFKTIPVHSELDILKFSN--IFEH 213 >gi|22298627|ref|NP_681874.1| putative ribonuclease D [Thermosynechococcus elongatus BP-1] gi|22294807|dbj|BAC08636.1| tlr1083 [Thermosynechococcus elongatus BP-1] Length = 211 Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 95/203 (46%), Positives = 130/203 (64%), Gaps = 5/203 (2%) Query: 7 HEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + D+ A + D +AVDTET+GL RDRLC+VQ+ +G V +++I GQK AP Sbjct: 10 FDYDLSPTALAHFLNADQLAVDTETMGLNIPRDRLCLVQVCDPEGQVAVVKIGRGQKEAP 69 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L +L + KIFHY RFD+A L Y G+RV PVFCTKIAS++ RTY+ +HGLKD + Sbjct: 70 HLQQLLEHPRITKIFHYARFDLATLRYHLGIRVHPVFCTKIASKIARTYSPRHGLKDLVL 129 Query: 125 ELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +LLG+ I K+ QSSDW A L ++QL+YAA+DV +L LR Q T L+R R +L + Sbjct: 130 DLLGVEIDKSAQSSDWGNATALREDQLRYAANDVRYLIPLRQQLTAMLKREERFELVQTA 189 Query: 184 CNFLMDRAELDLLGWENVDIFSH 206 + L +LDL G+ V F H Sbjct: 190 LSCLPAIVDLDLAGYTQV--FEH 210 >gi|254486025|ref|ZP_05099230.1| ribonuclease D [Roseobacter sp. GAI101] gi|214042894|gb|EEB83532.1| ribonuclease D [Roseobacter sp. GAI101] Length = 385 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M TI ++ A C A D + +DTE L +LC++Q++ D ++ Sbjct: 1 MKTITTT-AELEAYCLEAATHDYVTIDTEFLRERTYYSKLCLIQMAMPGTDDSGAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 AG + L + D K+FH R D+ + F GV P+F T++A+ + + Q Sbjct: 60 LAGDMSLEPLYALFRDTSVVKVFHAARQDLEIFFVDAGVFPEPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ + K + +DWS L+D Q +YA +DV HL + KL+ GR Sbjct: 119 VGYETLVRKIAHQAVDKTSRFTDWSRRPLTDAQAKYALADVTHLRQVYEFLARKLEETGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 + L W+ V ++S Sbjct: 179 ARWVAEELEILTSPDTYITQPRDAWKRVKTRTNS 212 >gi|319407179|emb|CBI80818.1| Ribonuclease D [Bartonella sp. 1-1C] Length = 383 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 5/191 (2%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 A R + + VDTE + +LC++Q++ D T+ I + P +++D+K Sbjct: 15 AALRKSNFVTVDTEFIRETTFWPQLCLIQVASQDITILIDPMVQDINLQP-FFDLMIDKK 73 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+FH R DI ++++ G+ P+F T++A + + + ++ G ++ K+ Sbjct: 74 VVKVFHAARQDIEIIYHLGGIIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLDKS 132 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 + +DWS LS++QL YA SDV +L + L ++L+ R+ L+ D Sbjct: 133 SRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRTHWMHDEMTLLLTPTTYD 192 Query: 195 L---LGWENVD 202 + W+ V Sbjct: 193 IPENEAWKKVK 203 >gi|83311936|ref|YP_422200.1| ribonuclease D [Magnetospirillum magneticum AMB-1] gi|82946777|dbj|BAE51641.1| Ribonuclease D [Magnetospirillum magneticum AMB-1] Length = 397 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 7/211 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I E + A C + + VDTE + +LC+VQ++ D I +A Sbjct: 1 MPMISDTES-LAAFCRRLKSAPFVTVDTEFMREKTYWPQLCLVQVAGPDEARAIDPLAPD 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 AP L ++ D K+FH R D+ + + P+F T+IA+ + + + G Sbjct: 60 MDLAP-LFELMADTNVLKVFHAARQDVEIFLHLADAIPTPIFDTQIAAMVC-GFGDSVGY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + +L I K+ + +DWS LS++Q+QYA +DV HL + K+++ GR + Sbjct: 118 ETLASQLAKARIDKSMRFTDWSIRPLSEKQIQYALADVTHLRVAYEKLVRKVEKNGRIEW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIFSHS 207 + L + + W + S S Sbjct: 178 LSEEMALLTEPGTYRVDPENAWRRLKPRSTS 208 >gi|75675781|ref|YP_318202.1| ribonuclease D [Nitrobacter winogradskyi Nb-255] gi|74420651|gb|ABA04850.1| ribonuclease D [Nitrobacter winogradskyi Nb-255] Length = 382 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 6/204 (2%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + ++ + CA I VDTE L LC++QL+ D V + +A G Sbjct: 2 DLITTSAELASVCARLARHPVITVDTEFLRETTYYPLLCVIQLASPDEAVVVDALAGGID 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 P ++ +E K+FH R DI ++++ G+ PVF T++A+ + + + Sbjct: 62 LKP-FFALMSNESVLKVFHAARQDIEIIWHQAGLIPHPVFDTQVAAMVL-GHGDSIAYDA 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ + G K + +DWS L+ EQL+YA +DV HL + L + GRSD + Sbjct: 120 LVERITGHRPDKTHRFTDWSRRPLTAEQLEYAVADVTHLRDVFAALDADLSKRGRSDWVS 179 Query: 182 SCCNFLMDRAELDL---LGWENVD 202 L D WE + Sbjct: 180 EEMEVLTSPKTYDFHPERAWERLK 203 >gi|218670444|ref|ZP_03520115.1| ribonuclease III protein [Rhizobium etli GR56] Length = 212 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 3/191 (1%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 4 TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ D K K+FH R DI ++F + P+F T++A+ + + + + Sbjct: 63 FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + ++I K+ + +DWS LSD+QL+YA +DV HL + L +L R GR+ + + Sbjct: 122 IKSVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEMD 181 Query: 186 FLMDRAELDLL 196 L R D+ Sbjct: 182 ILEARETYDMH 192 >gi|209964842|ref|YP_002297757.1| ribonuclease D, putative [Rhodospirillum centenum SW] gi|209958308|gb|ACI98944.1| ribonuclease D, putative [Rhodospirillum centenum SW] Length = 385 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 6/206 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + D+ A + + + VDTE + +LC+VQ++ D I +A G Sbjct: 3 LITTTADLAAFVTRLKGAEYVTVDTEFMREKTYWPQLCLVQVAGPDEAAAIDPLAEGMDL 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 P L +L D K+FH R D+ + + G P+F T+IA+ + + + G + Sbjct: 63 TP-LFELLHDPGVLKVFHAARQDVEIFVHLTGAVPAPLFDTQIAAMVC-GFGDSVGYETL 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + +L I K+ + +DWS L++ QL YA SDV HL + +L + GR Sbjct: 121 ITKLTSARIDKSSRFTDWSQRPLTERQLSYALSDVTHLRPAYEKLRRRLAKTGREHWLDE 180 Query: 183 CCNFLMDRAELDL---LGWENVDIFS 205 L D A + W + + + Sbjct: 181 ENVILADPATYRVDPEEAWRRLKVRT 206 >gi|110633474|ref|YP_673682.1| ribonuclease D [Mesorhizobium sp. BNC1] gi|110284458|gb|ABG62517.1| ribonuclease D [Chelativorans sp. BNC1] Length = 392 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 5/196 (2%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A A D + VDTE + LC++Q++ T + +A G AP ++ + Sbjct: 13 AVAALENSDFVTVDTEFIRETTFWPELCLIQMAAPGVTALVDPLADGMDLAP-FFRLMGN 71 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E+ K+FH R DI +++ G+ P+F T++A+ + + + + + G +I Sbjct: 72 EQVVKVFHAARQDIEIIYNRGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVLRITGEHID 130 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 K + +DW LS++QL+YA +DV HL + T +LQR GR + L R Sbjct: 131 KTSRFTDWRHRPLSEKQLRYALADVTHLIPVYAHLTTELQRGGREGWLKEEMDVLTARET 190 Query: 193 LDLL---GWENVDIFS 205 D W+ + + + Sbjct: 191 YDPHPDDAWKRLKMRA 206 >gi|300024345|ref|YP_003756956.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888] gi|299526166|gb|ADJ24635.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888] Length = 384 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M TI ++ A C D +AVDTE L LC++QL+ + + +A G Sbjct: 1 MQTITTT-PELAALCETLSRSDYVAVDTEFLREQTFWPLLCLIQLAGPEAEAIVDPLAPG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 AP ++ D K+FH R DI ++F GV PVF +++A+ + + + Sbjct: 60 LDLAP-FYHLMADTSTVKVFHAARQDIEIVFLKSGVVPTPVFDSQVAAMVC-GFGDSISY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + +K+ G ++ K+ + +DWS LS +QL YA +DV +L + + + L + GR+ Sbjct: 118 VNLVKKTTGADLDKSSRFTDWSRRPLSPKQLDYALADVTYLRDVYQRLRQTLDKTGRTPW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 L A D W+ + + Sbjct: 178 LQEEMGVLTSPATYDTSPENAWQRLRLR 205 >gi|254526817|ref|ZP_05138869.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202] gi|221538241|gb|EEE40694.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202] Length = 211 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 123/208 (59%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I D+ ++ + +A+DTE +GL+ RDRLC+VQ+ G I+I Sbjct: 6 KNIDFFYNDLTSDLYNLYKNSSFLAIDTEAMGLIHGRDRLCLVQICNEFGRTSCIKIELN 65 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 ++ +L +L D+K KIFHY RFD+A L + + +FCTKIAS+L RTYTN+HGL Sbjct: 66 TSSSTHLKALLEDDKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGL 125 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 KD + ELLGI + K+ QSSDW + +DL+ EQL YAA+DV +L + L+R R + Sbjct: 126 KDLINELLGIELDKSSQSSDWGSNEDLTKEQLDYAANDVRYLIEAMHKLKVILKRENRYE 185 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + A+LD+L + N IF H Sbjct: 186 LAQKCFETVPVHADLDILKFSN--IFEH 211 >gi|90423836|ref|YP_532206.1| ribonuclease D [Rhodopseudomonas palustris BisB18] gi|90105850|gb|ABD87887.1| ribonuclease D [Rhodopseudomonas palustris BisB18] Length = 384 Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I + + A C AI VDTE L LC+VQ++ + V + +A G Sbjct: 1 MDLITTTD-QLAAVCDRLAKHPAITVDTEFLRETTYYPLLCVVQMASAEDAVVVDTLAPG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ ++ K+FH R DI ++++ G+ P+F T++A+ + Y + Sbjct: 60 IDLKP-FFDLMANDDVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ + G K + +DW+ L+DEQL YA SDV HL + L++ GRSD Sbjct: 118 DQLVERITGHRPDKTHRFTDWARRPLTDEQLHYAVSDVTHLRDVFAALDADLKKRGRSDW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + L D WE + Sbjct: 178 VSEEMEVLTSPKTYDFHPERAWERLKTR 205 >gi|84517066|ref|ZP_01004422.1| ribonuclease D [Loktanella vestfoldensis SKA53] gi|84508961|gb|EAQ05422.1| ribonuclease D [Loktanella vestfoldensis SKA53] Length = 385 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 10/212 (4%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRIAA 58 I D+ A C A + VDTE L +LC+VQ+ + G+ V + +A Sbjct: 3 IISTTADLAAFCTQAAKRAYVTVDTEFLRERTYYSKLCLVQMAYRDAAGEDAVLVDPLAE 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 G P L + D K+FH R D+ + GV P+F T++A+ + + Q G Sbjct: 63 GISLDP-LYDLFRDPGVVKVFHAARQDLEIFHVDAGVIPAPLFDTQVAAMVC-GFGEQAG 120 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + ++++ + K+ + +DWS L+D Q +YA +DV HL + +L + GR+ Sbjct: 121 YETLVRKIAKAEVDKSSRFTDWSRRPLTDAQAEYALADVTHLRDVYEYLANRLAKSGRTK 180 Query: 179 LATSCCNFLMDRAELDLL---GWENVDIFSHS 207 L D A W V + S Sbjct: 181 WVAEEMAVLNDPATYQSNPDEAWMRVKTRTTS 212 >gi|295689658|ref|YP_003593351.1| ribonuclease D [Caulobacter segnis ATCC 21756] gi|295431561|gb|ADG10733.1| ribonuclease D [Caulobacter segnis ATCC 21756] Length = 389 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 8/205 (3%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I ++ A C +AVDTE + +LC++Q++ I +A Sbjct: 1 MKPITTT-AELAAFCNELAGEPFVAVDTEFMRETTYWPKLCLIQVASPTHEAVIDPLADD 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P L+ ++ DE+ K+FH R D+ + +P+F T++A + + Q Sbjct: 60 IDLEP-LLAVMRDERILKVFHAARQDVEIF-NNLKAMPKPLFDTQVAG-MAAGFGEQIAY 116 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++++L I + K+ + +DW+ L++ QL YA +DV HL AL E+L+ GR Sbjct: 117 DALVRQMLRIELDKSSRFTDWARRPLTEAQLTYALADVTHLAALFPILRERLETSGRLAW 176 Query: 180 ATSCCNFLMDRAELDL---LGWENV 201 + D A D+ W + Sbjct: 177 VEEEMTAISDPAAYDVDPEKAWRRL 201 >gi|83858515|ref|ZP_00952037.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633] gi|83853338|gb|EAP91190.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633] Length = 384 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 6/208 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A R + +AVDTE + +LC++Q + D V I +A G Sbjct: 1 MEWIADTESLAQACAKLRQAEYVAVDTEFMRESTFWPQLCLIQAAGDDTEVLIDPLAEGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGL 119 P +L D+ K+FH R D+ + F+ G + +P+F ++IA+ + + Sbjct: 61 DLQP-FYDLLTDQNVIKVFHACRQDLEIFFHEGGGIIPKPLFDSQIAA-MAVGLGDSISY 118 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + ++ L+ +N+ K + +DWS LSD+Q +YA +DV HL L EKL ++GR Sbjct: 119 DNLVRALVKVNLDKGSRFTDWSRRPLSDKQKEYALADVTHLRDLFPILREKLAKVGREAW 178 Query: 180 ATSCCNFLMDRAELDLL---GWENVDIF 204 L D A ++ W+ + + Sbjct: 179 LAEEMKTLTDPATYEMHPEDAWKRLKLR 206 >gi|157414190|ref|YP_001485056.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215] gi|157388765|gb|ABV51470.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215] Length = 211 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 87/208 (41%), Positives = 123/208 (59%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I D+ ++ + +A+DTE +GL+ RDRLC+VQ+ G I+I Sbjct: 6 KNIDFFYNDLTSDLYNLYKNSSFLAIDTEAMGLIHGRDRLCLVQICNEFGRTSCIKIELN 65 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 ++ +L +L DEK KIFHY RFD+A L + + +FCTKIAS+L RTYTN+HGL Sbjct: 66 TSSSTHLKALLEDEKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGL 125 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 KD + ELLGI + K+ QSSDW + +DL+ EQL YAA+DV +L + L+R R + Sbjct: 126 KDLINELLGIELDKSSQSSDWGSNEDLTKEQLDYAANDVRYLIEAMHKLKVILKRENRYE 185 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + A+LD+L + N IF H Sbjct: 186 LAQKCFETVSVHADLDILKFSN--IFEH 211 >gi|222085490|ref|YP_002544020.1| ribonuclease D [Agrobacterium radiobacter K84] gi|221722938|gb|ACM26094.1| ribonuclease D [Agrobacterium radiobacter K84] Length = 381 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 6/200 (3%) Query: 7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + A C + I +DTE L LC++Q++ V + +A G P Sbjct: 4 TTAQLEAACQELAKSEFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGLDLKP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ + K+FH R DI ++F + P+F T++A+ + + + + Sbjct: 63 FFELMANTAVMKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + I I K+ + +DWS LS++QL YA +DV HL + L E+L+R GR+ Sbjct: 122 IKNIQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLSLKEQLEREGRASWLLEEMA 181 Query: 186 FLMDRAELDLL---GWENVD 202 L R DL W+ + Sbjct: 182 ILEARETYDLHPDDAWQRLK 201 >gi|260466883|ref|ZP_05813067.1| ribonuclease D [Mesorhizobium opportunistum WSM2075] gi|259029385|gb|EEW30677.1| ribonuclease D [Mesorhizobium opportunistum WSM2075] Length = 383 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A A D + VDTE + LC++Q++ T I +++ Sbjct: 1 MHVITTQKELETALAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLSSDI 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P ++ +E K+FH R DI ++ + + PVF T++A+ + + + Sbjct: 61 DLRP-FFKLMANEAVVKVFHAARQDIEIIVHLGDLVPHPVFDTQVAAMVC-GFGDSVSYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ + G + K+ + +DW LSD+QL YA +DV HL + +L R R+ Sbjct: 119 QLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLNAELARENRAHWL 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 + L R D W+ + Sbjct: 179 NEEMDVLTSRETYDPHPEDAWKRLK 203 >gi|189184295|ref|YP_001938080.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda] gi|189181066|dbj|BAG40846.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda] Length = 210 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 94/210 (44%), Positives = 127/210 (60%), Gaps = 9/210 (4%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-------DGTVDIIRI 56 I + DIP +A+DTET+GL RDRLC++Q D V +++ Sbjct: 3 IHIFINDIPDNLM--ISGDLAIDTETMGLNLIRDRLCLLQFCQESKDDTIDDKEVFLVKF 60 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 Q N NL +L+D+ R KIFH+ RFD+A + Y GV + +FCT +AS+L RTYT+ Sbjct: 61 EDQQYNCRNLKKLLMDDGRTKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDS 120 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 HGLKD +ELLGI ISK QSSDW L+ +Q +YAA DVV+LH ++ E L R R Sbjct: 121 HGLKDLCRELLGIQISKQCQSSDWGGQSLTSDQEEYAAKDVVYLHRIKNILEEMLIREQR 180 Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206 D+A FL RAELD++GW+++DI SH Sbjct: 181 LDIAQKIFKFLPARAELDVIGWQDIDILSH 210 >gi|319784197|ref|YP_004143673.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170085|gb|ADV13623.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 383 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A D + VDTE + LC++Q++ T I +A Sbjct: 1 MHVITTQKELETVLAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLAPDI 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P ++ +E K+FH R DI ++ + + PVF T++A+ + + + Sbjct: 61 DLKP-FFRLMANEAVVKVFHAARQDIEIIVHLGDLVPHPVFDTQVAAMVC-GFGDSVSYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ + G + K+ + +DW LSD+QL YA +DV HL + + +L+R R+ Sbjct: 119 QLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLSAELERENRAHWL 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L R D W+ + Sbjct: 179 NEEMEVLTSRETYDPHPEDAWKRLK 203 >gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264] gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264] Length = 382 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 6/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT I ++ + IAVDTE + +LC++Q + I A G Sbjct: 1 MTPITTNDALVQFCSDVASAPFIAVDTEFMRETTYWPKLCLIQAATPTHEAIIDPQADGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P L +L D K+FH R D + G +P+F T++A+ + + +Q Sbjct: 61 DLTPFL-DILRDPAIVKVFHAARQDTEIFVK-LGAMPKPMFDTQVAA-MAAGFGDQVAYD 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++++L I++ K + +DWS LSD QL YA DV HL AL + ++L R GR D Sbjct: 118 GLVRQMLKIDLDKGSRFTDWSRRPLSDAQLTYAIGDVTHLAALYPKLRDRLAREGRLDWV 177 Query: 181 TSCCNFLMDRAELDL---LGWENVD 202 TS L++ D W+ + Sbjct: 178 TSEMEDLVNPELYDTTPDKAWKRLK 202 >gi|154247067|ref|YP_001418025.1| ribonuclease D [Xanthobacter autotrophicus Py2] gi|154161152|gb|ABS68368.1| ribonuclease D [Xanthobacter autotrophicus Py2] Length = 382 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A + VDTE L +LC+VQ++ + V I +A G Sbjct: 1 MDPISSTEALAAACERLARHPFVTVDTEFLRETTFWPKLCVVQVASPEEAVLIDALADGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ +E+ K+FH GR DI ++++ + PVF T++A+ + Y + Sbjct: 61 DLAP-FYRLMANERVMKVFHAGRQDIEIIWHQARLIPHPVFDTQVAAMVL-GYGDSISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ + G + K+ + +DWS LS Q+ YA +DV HL + ++ T L+ GR++ Sbjct: 119 QLVQRVTGHALDKSSRFTDWSRRPLSQAQIVYAVADVTHLRDIYIKLTTDLETRGRAEWV 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 + L A + WE + Sbjct: 179 GEEMHVLTSPATYEQHPDSAWERLK 203 >gi|121601718|ref|YP_989156.1| ribonuclease D [Bartonella bacilliformis KC583] gi|120613895|gb|ABM44496.1| ribonuclease D [Bartonella bacilliformis KC583] Length = 391 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A R D + VDTE + +LC++QL+ + T I + Sbjct: 1 MELITKTKDLEIAIATLRNSDFVTVDTEFIRETTFWPQLCLIQLASPNSTALIDPMVPDI 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P +++D+ K+FH R DI ++++ + P+F T+IA + + + Sbjct: 61 DLQP-FFDLMIDKNIVKVFHAARQDIEIIYHLGRIIPFPLFDTQIAGAIC-GFGDSISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + G ++ K+ + +DWS LS++Q+ YA +DV +L + L ++L+ R Sbjct: 119 QIVYHCTGQHLDKSSRFTDWSCRPLSEKQILYALADVTYLRDVYLSLKKQLEESKRFHWM 178 Query: 181 TSCCNFLMDRAELDL---LGWENVD 202 L D+ W+ V Sbjct: 179 DGEMAILSTPTTYDIPEDEAWKKVK 203 >gi|319898851|ref|YP_004158944.1| Ribonuclease D [Bartonella clarridgeiae 73] gi|319402815|emb|CBI76366.1| Ribonuclease D [Bartonella clarridgeiae 73] Length = 385 Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 2/195 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I A R + + VDTE + +LC++Q++ D T I +A Sbjct: 1 MKLITTTTDLEITIAALRNSNFVTVDTEFIRETTFWPQLCLIQVASPDITTLIDPMAQDI 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P +++D+K K+FH R DI +++ GV P+F T++A + + + Sbjct: 61 NLQP-FFDLMIDKKVVKVFHAARQDIETIYHLGGVIPSPLFDTQVAGSIC-GFGDSISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ G ++ K+ + +DWS LS++QL YA +DV +L + L ++L++ R+ Sbjct: 119 QIVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLTLKKQLEKKKRTHWM 178 Query: 181 TSCCNFLMDRAELDL 195 L+ D+ Sbjct: 179 NDEMAILLAPTTYDI 193 >gi|192291826|ref|YP_001992431.1| ribonuclease D [Rhodopseudomonas palustris TIE-1] gi|192285575|gb|ACF01956.1| ribonuclease D [Rhodopseudomonas palustris TIE-1] Length = 392 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I E + CA I VDTE L LC+VQ++ + + I +A G Sbjct: 1 MDLISTSE-QLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ +E+ K+FH R DI ++++ G+ P+F T++A+ + Y + Sbjct: 60 IDLKP-FFDLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ + G K + +DWS L+ EQ+ YA SDV HL + L++ GRSD Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + L + D+ WE + Sbjct: 178 VSEEMEVLTSPSTYDVHPERAWERLKTR 205 >gi|163792851|ref|ZP_02186827.1| Ribonuclease D [alpha proteobacterium BAL199] gi|159181497|gb|EDP66009.1| Ribonuclease D [alpha proteobacterium BAL199] Length = 386 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 6/207 (2%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + A C +AVDTE + +LC+VQL+ D V + +A G Sbjct: 2 TLVTDTASLSALCDRLARERYVAVDTEFMRDKTYYAKLCLVQLAGADEAVAVDTLAPGID 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 AP L ++ + K+FH R D+ + + P+F T+IA+ + + + Sbjct: 62 LAP-LYALMANPDVLKVFHAARQDVEIFVHQADAVPAPLFDTQIAAMVC-GFGDAVSYDR 119 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ L G+ + K + +DWS LS Q++YA +DV+HL + KL++ GR + + Sbjct: 120 LVRGLTGVKLDKTSRFTDWSHRPLSSRQIEYALADVIHLRPAYEKLHRKLEKTGRLEWLS 179 Query: 182 SCCNFLMDRAELDL---LGWENVDIFS 205 L D A + W + I S Sbjct: 180 EEMAVLTDTATYKVPPEQSWRRLKIRS 206 >gi|220924978|ref|YP_002500280.1| ribonuclease D [Methylobacterium nodulans ORS 2060] gi|219949585|gb|ACL59977.1| ribonuclease D [Methylobacterium nodulans ORS 2060] Length = 389 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 3/194 (1%) Query: 1 MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I +G + A CA + VDTE + +LC++Q++ DG+ ++ A Sbjct: 1 MKLITSTDG-LAATCAQFATQPFVTVDTEFMRETTYYPKLCLIQIAAPDGSTALVDPLAP 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + ++ DE+ K+FH R D+ +++ G+ +P F T++A+ + Y + Sbjct: 60 AIDLTPFFALMGDERVLKVFHSARQDLEIIWLQGGLLPQPFFDTQVAAMVC-GYGDSVSY 118 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + + ++ I K+ + +DWS LS+ QL YA SDV HL + +L R Sbjct: 119 EQLVNDVAKAKIDKSSRFTDWSRRPLSEAQLSYALSDVTHLIKVYEALARQLLATDRGAW 178 Query: 180 ATSCCNFLMDRAEL 193 L Sbjct: 179 LDEEMAVLTSPETY 192 >gi|39936108|ref|NP_948384.1| ribonuclease D [Rhodopseudomonas palustris CGA009] gi|39649962|emb|CAE28486.1| ribonuclease D [Rhodopseudomonas palustris CGA009] Length = 392 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I E + CA I VDTE L LC+VQ++ + + I +A G Sbjct: 1 MDLISTSE-QLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ +E+ K+FH R DI ++++ G+ P+F T++A+ + Y + Sbjct: 60 IDLKP-FFDLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ + G K + +DWS L+ EQ+ YA SDV HL + L++ GRSD Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + L + D+ WE + Sbjct: 178 VSEEMEVLTSPSTYDVHPERAWERLKTR 205 >gi|16125948|ref|NP_420512.1| ribonuclease D [Caulobacter crescentus CB15] gi|221234713|ref|YP_002517149.1| ribonuclease D [Caulobacter crescentus NA1000] gi|13423116|gb|AAK23680.1| ribonuclease D [Caulobacter crescentus CB15] gi|220963885|gb|ACL95241.1| ribonuclease D [Caulobacter crescentus NA1000] Length = 389 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 8/205 (3%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I ++ A C +AVDTE + +LC++Q++ I +A Sbjct: 1 MKLITTT-AELAAFCNGLAGEPFVAVDTEFMRETTYWPKLCLIQVASPTQEAVIDPLADN 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P LV ++ DE+ K+FH R D+ + +P+F T++A + + Q Sbjct: 60 IDLEPLLV-VMRDERILKVFHAARQDVEIF-NNLKAMPKPLFDTQVAG-MAAGFGEQIAY 116 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++++L I I K+ + +DW+ L+D QL YA +DV HL L E+L+ GR Sbjct: 117 DALVRQMLRIEIDKSSRFTDWARRPLTDAQLSYALADVTHLAKLFPILRERLETSGRLAW 176 Query: 180 ATSCCNFLMDRAELDL---LGWENV 201 + D A D+ W + Sbjct: 177 VEEEMTAISDPAAYDVDPEKAWRRL 201 >gi|262276193|ref|ZP_06054002.1| ribonuclease D [Grimontia hollisae CIP 101886] gi|262220001|gb|EEY71317.1| ribonuclease D [Grimontia hollisae CIP 101886] Length = 405 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 13/193 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR V A+ +DTE + RL ++QL G+ I I + L G+L DE Sbjct: 50 ARQVPAVMLDTEFVRTRTLYPRLGLIQLYDGETLSLIDPIE--LDDLSPLWGLLTDESVV 107 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V ++ G P+ T+I + + G ++E L + + K + Sbjct: 108 KVLHACSEDLEVFYHYAGAMPTPMVDTQIMAAFL-GHGLSTGFASLVEEYLVVTLDKGEA 166 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL--------- 187 +DW A LS++QL+YAA+DV +L L + ++++ G + C + Sbjct: 167 RTDWCARPLSEKQLEYAAADVYYLLPLYNELSKRVSAAGWDEAVKQECALMASKRGKTPE 226 Query: 188 MDRAELDL-LGWE 199 ++A LD+ W+ Sbjct: 227 PEKAYLDIKNAWQ 239 >gi|217976404|ref|YP_002360551.1| ribonuclease D [Methylocella silvestris BL2] gi|217501780|gb|ACK49189.1| ribonuclease D [Methylocella silvestris BL2] Length = 405 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 7/204 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M+ I E + C + VDTE L +LC+VQL+ D V + +A+G Sbjct: 7 MSLITTTEA-LAEVCQRLASHAFVTVDTEFLRETTFWPKLCVVQLASADEAVAVDALASG 65 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 AP L ++ D K+FH R D+ +++ + P+F T++A+ + + +Q Sbjct: 66 LDLAP-LFELMADPAVVKVFHAARQDLEIVWNLAKIIPAPLFDTQVAAMVC-GFGDQVSY 123 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 D ++ + +++ K+ + +DWS L Q+ YA +DV +L + +KL+ GR Sbjct: 124 GDLVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKETGRLGW 183 Query: 180 ATSCCNFLMDRAELDL---LGWEN 200 + L A + WE Sbjct: 184 LSDEMALLTSPATYEQHPDNAWER 207 >gi|315500006|ref|YP_004088809.1| ribonuclease d [Asticcacaulis excentricus CB 48] gi|315418018|gb|ADU14658.1| ribonuclease D [Asticcacaulis excentricus CB 48] Length = 382 Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 5/194 (2%) Query: 1 MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M TI + CA I VDTE + +LC++Q + + I ++ Sbjct: 1 MPTITTTAA-LTDFCAKIASAPFITVDTEFMRETTYWPKLCLIQAASEEHAGIIDPLSPD 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P L +L D K+FH R D+ + G PVF T++A+ + + +Q Sbjct: 60 LDLKPFL-DLLTDPAILKVFHACRQDVEIF-NNLGAMPAPVFDTQVAA-MAAGFGDQVAY 116 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 +++++ ++I K + +DWS LS++QLQYA DV HL L + EKL+ R + Sbjct: 117 DSLVRQVIKVDIDKGSRFTDWSRRPLSEQQLQYALGDVTHLARLYPKLVEKLKAQNRYEW 176 Query: 180 ATSCCNFLMDRAEL 193 + L D Sbjct: 177 VAAEMADLTDPKLY 190 >gi|162146523|ref|YP_001600982.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] gi|209543478|ref|YP_002275707.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] gi|161785098|emb|CAP54642.1| putative Ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] gi|209531155|gb|ACI51092.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] Length = 393 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 2/176 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R +++DTE + LC+VQL+ D V + +A G AP L +L D + Sbjct: 28 LRREPFVSIDTEFVRERTYWPELCLVQLAGQDEVVVVDTLAPGIDLAP-LGVLLDDPEVV 86 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH R D+ + Y FG +F T++A+ + + +Q G + + L G +I KA + Sbjct: 87 KVFHAARQDLEIFLYLFGHLPAALFDTQVAAMVA-GFGDQVGYDNLVASLTGAHIDKAHR 145 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 SDWSA LS+ Q+ YAA+DV HL + E+L+R GR D S L D A Sbjct: 146 FSDWSARPLSEAQIAYAAADVTHLRTVYQLLLERLEREGRLDWVASDLAVLSDPAT 201 >gi|330991792|ref|ZP_08315742.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1] gi|329761260|gb|EGG77754.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1] Length = 395 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 3/188 (1%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 ++ A A R + +DTE + LC+VQL+ G+ V +I A + Sbjct: 16 TTTAELEAVTARLRREPFVTIDTEFVRERTYWPELCLVQLA-GENDVVVIDTTAPGIDLS 74 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L G+L D K+FH R D+ + + F +F T++A+ + Y +Q G + + Sbjct: 75 SLGGLLDDAGVIKVFHAARQDLEIFLHLFDRLPAALFDTQVAAMVA-GYGDQVGYDNLVW 133 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 LLG+ I K+ + SDWS LS Q+ YAA+DV +L + Q +L++ GR D + Sbjct: 134 SLLGVQIDKSHRFSDWSVRPLSAAQIGYAAADVTYLRQVYGQLLAQLEKEGRLDWVAAEL 193 Query: 185 NFLMDRAE 192 + L + A Sbjct: 194 DVLNNPAT 201 >gi|304321318|ref|YP_003854961.1| ribonuclease D [Parvularcula bermudensis HTCC2503] gi|303300220|gb|ADM09819.1| ribonuclease D [Parvularcula bermudensis HTCC2503] Length = 383 Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 3/191 (1%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ A C D + VDTE + +LC++Q++ + I +AA Sbjct: 3 IVTQTQDLTALCGRLAKHDFVTVDTEFMRERTYYPKLCLIQVASTEEAAIIDPLAAALDL 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 AP L +L D K+FH R D+ + + G P+F T+IA+ + + +Q G + Sbjct: 63 APFL-ELLADPSVLKVFHAARQDLEIFYKLMGKVPAPLFDTQIAA-MACGHGDQVGYEAL 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E+ G + K + +DW+ LSD+QL YA DV HL +L+ GR + + Sbjct: 121 IREVTGAQVDKGSRFTDWAKRPLSDKQLTYALGDVTHLVDAYQALITELEEKGRLEWIHA 180 Query: 183 CCNFLMDRAEL 193 L D Sbjct: 181 EMTQLNDPTLY 191 >gi|316933724|ref|YP_004108706.1| ribonuclease D [Rhodopseudomonas palustris DX-1] gi|315601438|gb|ADU43973.1| ribonuclease D [Rhodopseudomonas palustris DX-1] Length = 387 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I E + CA I VDTE L LC+VQ++ + + I +A G Sbjct: 1 MDLISTSE-QLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEDALVIDALADG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ +E+ K+FH R DI ++++ G+ P+F T++A+ + Y + Sbjct: 60 IDLKP-FFDLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ + G K + +DWS L+ EQ+ YA SDV HL + L++ GRSD Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + L + D+ WE + Sbjct: 178 VSEEMEVLTSPSTYDVHPERAWERLKTR 205 >gi|154253761|ref|YP_001414585.1| ribonuclease D [Parvibaculum lavamentivorans DS-1] gi|154157711|gb|ABS64928.1| ribonuclease D [Parvibaculum lavamentivorans DS-1] Length = 427 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I +E A + VDTE + LC++QL+ + + +A Sbjct: 44 MEIITTNEALRAACDRLSTAGFVTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDL 103 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ + K+FH R DI + + P+F T++A+ + + + G + Sbjct: 104 DLAP-FYALMKNRNVVKVFHAARQDIEIFCHEGKAIPDPLFDTQVAAMVC-GFGDSVGYE 161 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +++L G ++ K+ + +DWS LSD+QLQYA +DV +L + ++L R+ Sbjct: 162 TLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVLAKRLTHTKRAHWV 221 Query: 181 TSCCNFLMDRAELDL---LGWENVD 202 L D + W+ V Sbjct: 222 AEEMAVLQDPETYAMRPENAWKRVK 246 >gi|84687040|ref|ZP_01014923.1| ribonuclease D [Maritimibacter alkaliphilus HTCC2654] gi|84665014|gb|EAQ11495.1| ribonuclease D [Rhodobacterales bacterium HTCC2654] Length = 387 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 10/215 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M TI E + C A + VDTE L +LC+VQL+ + ++ Sbjct: 1 MKTITTTEA-LADYCRRAATFPYVTVDTEFLRERTYYSKLCLVQLAVMGDDDEVDAVLVD 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 A + L + DE K+FH R D+ + + G+ P+F T++A+ + + + Sbjct: 60 PLADGLSLEPLYELFRDEGVVKVFHAARQDLEIFYVDAGLIPSPLFDTQVAAMVC-GFGD 118 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + ++++ + K+ + +DWS L+D Q +YA DV HL + +L+ G Sbjct: 119 QAGYETLVRKIAKAQLDKSSRFTDWSRRPLTDAQKKYAIGDVTHLRVIYEFLKAQLEETG 178 Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 R+ + L D + W+ V ++S Sbjct: 179 RAKWVKEELSVLTDPDTYTVDPDEAWKRVKTRTNS 213 >gi|304391965|ref|ZP_07373907.1| ribonuclease D [Ahrensia sp. R2A130] gi|303296194|gb|EFL90552.1| ribonuclease D [Ahrensia sp. R2A130] Length = 383 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A D + VDTE L LC++Q++ D + +A G Sbjct: 1 MKIIETTQELATACKDFAQHDYVTVDTEFLRETTFWPILCLIQIAGPDDECIVDPMADGI 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P ++ D K+FH R D+ ++++ G+ +P+F T++A+ + Y + Sbjct: 61 DLQP-FFELMADTSVVKVFHAARQDVEIVYHLGGLVPKPLFDTQVAAMVC-GYGDSVAYN 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + G I K+ + +DW+ L+ +QL YA +DV HL + L++ R Sbjct: 119 ALVSRITGGVIDKSSRFTDWARRPLTTKQLDYALADVTHLRDVYQSLKADLEKKNRKHWV 178 Query: 181 TSCCNFLMDRAELDL---LGWENVD 202 + L + DL W + Sbjct: 179 DEEMDVLTNPETYDLPVEKAWSRLK 203 >gi|13476899|ref|NP_108468.1| ribonuclease D [Mesorhizobium loti MAFF303099] gi|14027660|dbj|BAB53929.1| ribonuclease D [Mesorhizobium loti MAFF303099] Length = 383 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A D + VDTE + LC++Q++ T I ++ Sbjct: 1 MHVITTQKELETVLAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLSPDI 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ +E K+FH R DI ++ + + PVF T++A+ + + + Sbjct: 61 NLAP-FFRLMANEAVVKVFHAARQDIEIIVHLGDLVPHPVFDTQVAAMVC-GFGDSVSYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ + G + K+ + +DW LSD+QL YA +DV HL + + +L R R+ Sbjct: 119 QLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLSAELARENRAHWL 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 + L R D W+ + Sbjct: 179 NEEMDVLTSRETYDPHPEDAWKRLK 203 >gi|114569802|ref|YP_756482.1| ribonuclease D [Maricaulis maris MCS10] gi|114340264|gb|ABI65544.1| ribonuclease D [Maricaulis maris MCS10] Length = 386 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 7/209 (3%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT I E A A +AVDTE + +LC++Q + G+ V I +A G Sbjct: 1 MTMITTTEALEAACDALLQHPYVAVDTEFMRETVYWPQLCLIQAAAGETEVIIDPLAEGI 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG--VRVRPVFCTKIASRLTRTYTNQHG 118 P ++ DE+ K+FH R D+ + F+ G + P+F +++A+ + + Sbjct: 61 DLEP-FWELMADERIIKVFHAARQDLEIFFHQGGDALIPHPMFDSQVAA-MALGLGDSIA 118 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 ++ LL I K + +DWS LSD Q +YA +DV HL L E+L++ GR++ Sbjct: 119 YDALVRTLLNRPIDKGPRFTDWSRRPLSDAQTKYAIADVTHLRDLYPMMVERLEKTGRTE 178 Query: 179 LATSCCNFLMDRAELDL---LGWENVDIF 204 L + L W + + Sbjct: 179 WLAGEMKTLTSPSTYRLDPEESWRRMKLR 207 >gi|27379246|ref|NP_770775.1| ribonuclease D [Bradyrhizobium japonicum USDA 110] gi|27352397|dbj|BAC49400.1| ribonuclease D [Bradyrhizobium japonicum USDA 110] Length = 382 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I D+ A C+ I VDTE L LC+VQ++ + + I +A G Sbjct: 1 MDLITTT-ADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASPEEAIVIDTLAVG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ +E K+FH R DI ++++ + PVF T++A+ + Y + Sbjct: 60 IDLKP-FFELMGNEAVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAAMVL-GYGDSIAY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++++ G K + +DWS L+ EQ+ YA SDV HL + L++ RS+ Sbjct: 118 DQLVEKVTGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + L D WE + Sbjct: 178 VSIEMEVLTSPRTYDFHPERAWERLKTR 205 >gi|37522692|ref|NP_926069.1| ribonuclease D [Gloeobacter violaceus PCC 7421] gi|35213694|dbj|BAC91064.1| ribonuclease D [Gloeobacter violaceus PCC 7421] Length = 208 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 90/205 (43%), Positives = 133/205 (64%), Gaps = 5/205 (2%) Query: 5 RVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 ++ D+ E A Y+ + +AVD+E +GL+P RDRLC+VQL G V ++R++AG Sbjct: 6 QIFTDDLSPEVAGTYLQSGLLAVDSEAMGLLPHRDRLCLVQLCDEAGLVSLVRLSAGLTQ 65 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 A L +L K+FHY RFD+A+L + G+RV+P+ CTK+AS+L RTY+ +HGLKD Sbjct: 66 ASQLQKVLEAPAVIKLFHYARFDVAMLRHHLGIRVQPIVCTKVASKLARTYSPRHGLKDL 125 Query: 123 LKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + E +G+ + K+ QSSDW A +LS+EQL+YAA+DV +L + L+R GR +LA Sbjct: 126 VLETVGVELDKSAQSSDWGAVLELSEEQLRYAANDVRYLIPAWRKLETMLRREGRFELAR 185 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 C L + +LDLLG+ +V F H Sbjct: 186 RCFAHLETQVDLDLLGYSSV--FEH 208 >gi|83593408|ref|YP_427160.1| ribonuclease D [Rhodospirillum rubrum ATCC 11170] gi|83576322|gb|ABC22873.1| Ribonuclease D [Rhodospirillum rubrum ATCC 11170] Length = 386 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 7/211 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I + D+ CA + VDTE + +LC++QL+ G + A Sbjct: 1 MPLISTTK-DLADFCARLSTESFVTVDTEFMREKTYWPKLCLIQLA-GTTEAHCVDPLAP 58 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + L ++ +E K+FH R D+ + + G +P+F T++A+ + + + G Sbjct: 59 DIDMAPLFALMANESVLKVFHAARQDLEIFLHESGHLPKPIFDTQVAAMVC-GFGDSVGY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + + +L I K+ + +DW+ L+D QL YAA DV HL + + E L GR+ Sbjct: 118 ETLVAKLAKARIDKSMRFTDWARRPLNDRQLVYAAGDVTHLRVVYERLAETLAANGRTAW 177 Query: 180 ATSCCNFLMDRAELDLL---GWENVDIFSHS 207 L D A + W + S S Sbjct: 178 LDQEMAILTDPAHYRVEPEDAWMRIKARSRS 208 >gi|328543996|ref|YP_004304105.1| ribonuclease d protein [polymorphum gilvum SL003B-26A1] gi|326413740|gb|ADZ70803.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1] Length = 394 Score = 233 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 MT I + A D + VDTE L +LC++Q++ D V + +A G Sbjct: 1 MTVITTTDALADACSRLASHDYVTVDTEFLRETTFWPKLCVIQMAGPDDAVIVDALADGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP L ++ +E+ K+FH R DI ++++ G+ P+F T++A+ + + + Sbjct: 61 DLAPFL-DLMRNERVTKVFHAARQDIEIVYHLGGLIPHPLFDTQVAAMVC-GFGDSISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ + G I K+ + +DW+ L+ +QL YA +DV +L + L RS Sbjct: 119 QLVQRITGARIDKSSRFTDWARRPLTQKQLDYALADVTYLRDVYRFLKANLAEQDRSHWV 178 Query: 181 TSCCNFLMDRAEL---DLLGWENVD 202 L + W+ + Sbjct: 179 EDEMEILTSEGTYRTEPVNAWQRLK 203 >gi|156973677|ref|YP_001444584.1| ribonuclease D [Vibrio harveyi ATCC BAA-1116] gi|156525271|gb|ABU70357.1| hypothetical protein VIBHAR_01380 [Vibrio harveyi ATCC BAA-1116] Length = 382 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ CA AR D + +DTE + + +L ++QL G I + Sbjct: 15 IITKNKDLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDP--TELTD 72 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + V +L D K+ H D+ V FG P+ T++ + + G Sbjct: 73 MTSFVELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 131 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 132 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAGWWEAVQQ 191 Query: 183 CCNFLMDR---------AELDLLG-WE 199 + L+ + A LD+ G W+ Sbjct: 192 ESDLLVSKRIRNVNEENAYLDIKGAWQ 218 >gi|91070231|gb|ABE11151.1| putative ribonuclease D [uncultured Prochlorococcus marinus clone HF10-11H11] Length = 211 Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 85/208 (40%), Positives = 123/208 (59%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I + D+ + + +A+DTE +GL+ RDRLC+VQ+ I+I Sbjct: 6 KNIDLLYSDLTEDLYHLYKKSSYLAIDTEAMGLIHGRDRLCLVQICNEFNRTSCIKIELN 65 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 ++P+L +L D+K KIFHY RFD+A L + + +FCTKIAS+L RTYTN+HGL Sbjct: 66 TSSSPHLKALLEDDKITKIFHYARFDVAALKCNLKINTKNIFCTKIASKLARTYTNKHGL 125 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 KD + ELLGI + K+ QSSDW + +DL+ +QL YAA+DV +L + L+R R + Sbjct: 126 KDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMHKLKVILERENRYE 185 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + A+LD+L + N IF H Sbjct: 186 LAQKCFETVSVHADLDILKFSN--IFEH 211 >gi|326404838|ref|YP_004284920.1| ribonuclease D [Acidiphilium multivorum AIU301] gi|325051700|dbj|BAJ82038.1| ribonuclease D [Acidiphilium multivorum AIU301] Length = 392 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 80/184 (43%), Gaps = 3/184 (1%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + A C + VDTE + LC+VQL + I A G AP L + Sbjct: 19 LAALCDRLAAEPFVTVDTEFMREKTYFPELCVVQLGGANDVAVIDAQAEGLDLAP-LGAL 77 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + K+FH R DI + FG P+F T++A+ + + +Q G + L G Sbjct: 78 FANPAVTKVFHACRQDIEIFLLKFGAVPTPLFDTQVAAMVA-GFGDQVGYDTLVSSLAGG 136 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 I KA + SDWSA LS Q+ YAA+DV L + +L R GR D L D Sbjct: 137 RIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLTREGRLDWVAEEAAVLAD 196 Query: 190 RAEL 193 A Sbjct: 197 PATY 200 >gi|144899165|emb|CAM76029.1| Ribonuclease D [Magnetospirillum gryphiswaldense MSR-1] Length = 406 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 6/203 (2%) Query: 9 GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 ++ A C I VDTE + +LC+VQL+ D + +A G AP L Sbjct: 15 AELAAFCQRLSSAPYITVDTEFMREKTYYPQLCLVQLAGPDEARAVDPLAPGMDLAP-LF 73 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 ++ + K+FH R D+ + + G P+F T++A+ + + + G + +L Sbjct: 74 ELMANPNVLKVFHAARQDVEIFLHLSGAVPAPLFDTQVAAMVC-GFGDSVGYETLASQLA 132 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 I K+Q+ +DW+ L+++Q+QYA +DV HL + KL+R GR D L Sbjct: 133 KARIDKSQRFTDWALRPLTEKQVQYALADVTHLRVAYEKLVRKLERNGRLDWLVDEMAEL 192 Query: 188 --MDRAELD-LLGWENVDIFSHS 207 D D W+ + S S Sbjct: 193 ASPDTYRTDPENAWKRLKPRSSS 215 >gi|148261351|ref|YP_001235478.1| ribonuclease D [Acidiphilium cryptum JF-5] gi|146403032|gb|ABQ31559.1| ribonuclease D [Acidiphilium cryptum JF-5] Length = 392 Score = 232 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 60/191 (31%), Positives = 82/191 (42%), Gaps = 4/191 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I E + A C + VDTE + LC+VQL + I A G Sbjct: 13 IETTEA-LAALCDRLAAEPFVTVDTEFMREKTYFPELCVVQLGGANDVAVIDAQAEGLDL 71 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 AP L + + K+FH R DI + FG P+F T++A+ + + +Q G Sbjct: 72 AP-LGALFANPAVTKVFHACRQDIEIFLLKFGAVPAPLFDTQVAAMVA-GFGDQVGYDTL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + L G I KA + SDWSA LS Q+ YAA+DV L + +L R GR D Sbjct: 130 VSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLTREGRLDWVAE 189 Query: 183 CCNFLMDRAEL 193 L D A Sbjct: 190 EAAVLADPATY 200 >gi|89054329|ref|YP_509780.1| ribonuclease D [Jannaschia sp. CCS1] gi|88863878|gb|ABD54755.1| ribonuclease D [Jannaschia sp. CCS1] Length = 386 Score = 232 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 8/214 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M ++ A CA A + VDTE L +LC+VQ++ D +I Sbjct: 1 MPHTITTTDELAAYCARAATQPYVTVDTEFLRERTYFAQLCLVQVAMPGTDDTDAVLIDP 60 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A + L + + K+FH R D+ + F G+ P+F T++A+ + + +Q Sbjct: 61 LAEGLSLEPLYELFRNVNVVKVFHAARQDLEIFFVEGGLVPTPLFDTQVAAMVC-GFGDQ 119 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++ + N+ K+ + +DWS LSD Q YA +DV +L + + +L R R Sbjct: 120 VGYETLVRRIAKANLDKSSRFTDWSRRPLSDAQKVYALADVTYLREIYEYLSAELARTDR 179 Query: 177 SDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 + L + + W+ + + S+S Sbjct: 180 THWLEEELAQLTNADAYVVDPENAWKRLKLRSNS 213 >gi|269960729|ref|ZP_06175101.1| ribonuclease D [Vibrio harveyi 1DA3] gi|269834806|gb|EEZ88893.1| ribonuclease D [Vibrio harveyi 1DA3] Length = 372 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 4/188 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ CA AR D + +DTE + + +L ++QL G I + Sbjct: 5 IITKNKDLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDP--TELTD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + V +L D K+ H D+ V FG P+ T++ + + G Sbjct: 63 MTSFVELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 122 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAGWWEAVQQ 181 Query: 183 CCNFLMDR 190 + L+ + Sbjct: 182 ESDLLVSK 189 >gi|90419527|ref|ZP_01227437.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1] gi|90336464|gb|EAS50205.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1] Length = 385 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M TI ++ C+ + + VDTE + LC++Q++ D V + +A G Sbjct: 3 MHTITTT-AELSEACSRLAAAEFVTVDTEFIRETTFWPELCLIQMASDDLAVLVDPLADG 61 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 AP ++ DE+ K+FH R D+ ++ + P+F T++A+ + + Sbjct: 62 LDLAP-FFDLMRDERIVKVFHAARQDVEIIHKLGDIIPVPLFDTQVAAMVC-GFGESIAY 119 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + I K + +DW LSD+QL YA +DV +L + + +L GR+ Sbjct: 120 DQLVARTTDGRIDKTSRFTDWRRRPLSDQQLAYALADVTYLRDVYRFLSAQLAEKGRTRW 179 Query: 180 ATSCCNFLMDRAELDLL---GWENVDIF 204 L D A DL W + + Sbjct: 180 VDEEMAVLTDPATYDLHPDDAWRRLKLR 207 >gi|87300944|ref|ZP_01083786.1| putative ribonuclease D [Synechococcus sp. WH 5701] gi|87284815|gb|EAQ76767.1| putative ribonuclease D [Synechococcus sp. WH 5701] Length = 228 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 94/207 (45%), Positives = 127/207 (61%), Gaps = 5/207 (2%) Query: 4 IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V EGD+ AE A+AVDTE +GL+ RDRLC+VQ++ V IRIA GQ+ Sbjct: 20 FAVFEGDLDAEWLSLLAQAPALAVDTEAMGLVHGRDRLCLVQIADHLDNVCCIRIARGQQ 79 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 AP L ++ EK+FH+ RFD+A L G+ V P+FCTK+ASRL RTY+++HGLK+ Sbjct: 80 EAPRLRELMESPAIEKVFHFARFDLAALGEGLGIAVAPLFCTKVASRLARTYSSRHGLKE 139 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++EL+G+ + K QSSDW ++L + QL YAA+DV +L A R L+R R DLA Sbjct: 140 VVQELVGVELDKQSQSSDWGRVEELGEAQLVYAANDVRYLLAARHALAAILEREERLDLA 199 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207 C L AELD + +V F HS Sbjct: 200 RRCFACLPVFAELDRSRFGSV--FEHS 224 >gi|218710187|ref|YP_002417808.1| Ribonuclease D [Vibrio splendidus LGP32] gi|218323206|emb|CAV19383.1| Ribonuclease D [Vibrio splendidus LGP32] Length = 397 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ C AR D + +DTE + +L ++QL G+ I IA Sbjct: 30 IITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIA--LDE 87 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 VG+L D K+ H D+ V FG P+ T+I + + G Sbjct: 88 MTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-GHGLSTGFAAL 146 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + E +G+++ K++ +DW A LS +QL YAA+DV +L + + EK+ G + A Sbjct: 147 VSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQQ 206 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + D A LD+ G W+ Sbjct: 207 ESDLQVAKRIRKANPDNAYLDIKGAWQ 233 >gi|319408646|emb|CBI82301.1| Ribonuclease D [Bartonella schoenbuchensis R1] Length = 383 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I A A D + VDTE + +LC++QL+ + T+ I + Sbjct: 1 MKVITQTTELEIAIAALSNSDFVTVDTEFIRETTFWPQLCLIQLASPNVTMLIDPMVPDI 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 ++VDEK K+FH R DI +++ G+ P+F T+IA + + + Sbjct: 61 DLQS-FFDLMVDEKIVKVFHAARQDIETIYHLGGIIPYPLFDTQIAGSIC-GFGDSISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ G ++ K+ + +DWS LS++QL YA +DV +L + L +KL++ R+ Sbjct: 119 QIVQRCTGHHLDKSSRFTDWSHRPLSEKQLLYALADVTYLRDVYLSLKKKLEKNKRTHWM 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L+ D+ W+ V Sbjct: 179 DDELEILLTPTTYDIPEEDAWKKVK 203 >gi|262394860|ref|YP_003286714.1| ribonuclease D [Vibrio sp. Ex25] gi|262338454|gb|ACY52249.1| ribonuclease D [Vibrio sp. Ex25] Length = 388 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ C AR D + +DTE + + +L ++QL G+ I + Sbjct: 21 IITKNKDLEEVCIHAREADVVMLDTEFVRIRTFYPQLGLIQLFDGNRLSLIDP--TELTD 78 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T++ + + G Sbjct: 79 MTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFASL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ + G + Sbjct: 138 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTQAGWWEAVQQ 197 Query: 183 CCNFLMDR---------AELDLLG-WE 199 + L+ + A LD+ G W+ Sbjct: 198 ESDLLVSKRIRVTNEENAYLDIKGAWQ 224 >gi|170742646|ref|YP_001771301.1| ribonuclease D [Methylobacterium sp. 4-46] gi|168196920|gb|ACA18867.1| ribonuclease D [Methylobacterium sp. 4-46] Length = 394 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 8/206 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDG-TVDIIRIAA 58 M I + D+ + CA + VDTE + +LC++Q++ DG T + +A Sbjct: 1 MKLITSTD-DLTSACAHLSTQPFVTVDTEFMRETTYYPKLCLIQIAAPDGTTALVDPLAP 59 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 G AP ++ DE K+FH R D+ +++ G+ +P F T++A+ + Y + Sbjct: 60 GIDLAP-FFALMGDEGVLKVFHSARQDLEIIWLQGGLLPQPFFDTQVAAMVC-GYGDSVS 117 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + + ++ + K+ + +DWS LS+ QL YA SDV HL + +L R Sbjct: 118 YEQLVNDVAKAKVDKSSRFTDWSRRPLSEAQLTYALSDVTHLIKVYEALARQLLASDRGA 177 Query: 179 LATSCCNFLMDRAELD---LLGWENV 201 L + W + Sbjct: 178 WLDEEMAVLTSPETYEADPAQAWRRL 203 >gi|149915004|ref|ZP_01903533.1| ribonuclease D [Roseobacter sp. AzwK-3b] gi|149811192|gb|EDM71029.1| ribonuclease D [Roseobacter sp. AzwK-3b] Length = 385 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56 M T+ E + C AR D + VDTE L +LC+VQL+ G ++ Sbjct: 1 MKTLTTTE-QLEQFCTRARQFDYVTVDTEFLRERTYYSKLCLVQLAVPGTGAEDAVLVDP 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 AG + L + DE K+FH R D+ + F GV P+F T++ + + + Q Sbjct: 60 LAGDLSMAPLYDLFRDESVVKVFHAARQDLEIFFVDAGVIPAPLFDTQVTAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + ++++ + K + +DWS L+D Q +YA +DV HL + KL + R Sbjct: 119 VGYETLVRKIAKEQLDKTSRFTDWSRRPLTDAQKKYALADVTHLRDIYEFLARKLAQSDR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 T L + W+ V + S Sbjct: 179 QKWVTEELQVLTAPETYRVSPDEAWKRVKTRNAS 212 >gi|114704849|ref|ZP_01437757.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506] gi|114539634|gb|EAU42754.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506] Length = 383 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 5/205 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I+ E A A + VDTE + LC++Q++ D V + +A G Sbjct: 1 MEPIKTTEALTRACEALSRSPYVTVDTEFIRETTFWPELCLIQMASDDTEVLVDPLAKGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P ++ DE K+FH R D+ +++ V +P+F T+IA+ + + Sbjct: 61 SLDP-FFALMADESVVKVFHAARQDLEIVYKLGAVIPKPLFDTQIAAMVC-GFGESIAYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + L I K+ + +DW LSD+QL YA +DV HL + +L+ R Sbjct: 119 QLVARLTDGRIDKSSRFTDWRHRPLSDKQLTYALADVTHLRDVYKALKAQLEETSRHSWL 178 Query: 181 TSCCNFLMDRAELDLL---GWENVD 202 L D DL W + Sbjct: 179 DEEMAILADPQTYDLHPDDAWRRMK 203 >gi|170746940|ref|YP_001753200.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831] gi|170653462|gb|ACB22517.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831] Length = 395 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 1/193 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + + VDTE + +LC++Q++ DGT ++ A Sbjct: 1 MDLITTTDALRQICTRLAEQPFVTVDTEFMRETTYYPKLCLIQMAAPDGTAVLVDPLAPG 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + + ++ DE+ K+FH R D+ +++ G+ P F T++A+ + Y + + Sbjct: 61 IDLDPFIALMADERTVKVFHSARQDLEIIWLIGGILPHPFFDTQVAAMVC-GYGDSVSYE 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++ I K+ + +DWS LS+ QL YA SDV HL + +L R R Sbjct: 120 QLVNDVAKAKIDKSSRFTDWSRRPLSEAQLTYALSDVTHLVKIYEVLVAELLRTDRGAWL 179 Query: 181 TSCCNFLMDRAEL 193 L Sbjct: 180 DEEMAVLTSPETY 192 >gi|123969324|ref|YP_001010182.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601] gi|123199434|gb|ABM71075.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601] Length = 211 Score = 231 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 87/208 (41%), Positives = 123/208 (59%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I D+ + + +A+DTE +GL+ RDRLC+VQ+ I+I Sbjct: 6 KNIDFLYSDLTVDLYNLYKKSSYLAIDTEAMGLIHGRDRLCLVQICNEFKRTSCIKIELN 65 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 ++PNL +L D+K KIFHY RFD+A L + + +FCTKIAS+L RTYTN+HGL Sbjct: 66 TSSSPNLKALLEDDKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGL 125 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 KD + ELLGI + K+ QSSDW + +DL+ +QL YAA+DV +L L+ L+R R + Sbjct: 126 KDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMLKLKVILKRENRYE 185 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + A+LD+L + N IF H Sbjct: 186 LAQKCFETVSVHADLDILKFSN--IFEH 211 >gi|317968782|ref|ZP_07970172.1| ribonuclease [Synechococcus sp. CB0205] Length = 225 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 118/206 (57%), Gaps = 5/206 (2%) Query: 4 IRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 V + D+ E A+AVDTE +GL+ RDRLC+VQ+S V IRI GQ Sbjct: 20 FAVLDHDLNPEWRALLGASSALAVDTEAMGLIHGRDRLCLVQISDDHDNVCCIRIHRGQT 79 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 AP L ++ EK+FH+ RFD+A L + V P+FCTKI SRL RTYTN+HGLKD Sbjct: 80 EAPLLKELMEAAGIEKVFHFARFDVAALAEGLDIHVSPIFCTKIGSRLARTYTNRHGLKD 139 Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + EL + + K QSSDW ++LS+ QL YAA+DV +L A R + E L R R DLA Sbjct: 140 LVNELCHVELDKGAQSSDWGRVEELSESQLAYAANDVRYLLAARTRLIEMLVREERLDLA 199 Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206 C + ++LD + IF H Sbjct: 200 QRCFACIPVISDLDRGRFGA--IFEH 223 >gi|269967938|ref|ZP_06181978.1| ribonuclease D [Vibrio alginolyticus 40B] gi|269827461|gb|EEZ81755.1| ribonuclease D [Vibrio alginolyticus 40B] Length = 388 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ C AR D + +DTE + + +L ++QL G+ I + Sbjct: 21 IITKNKDLEEVCTHAREADVVMLDTEFVRIRTFYPQLGLIQLFDGNRLSLIDP--TELTD 78 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T++ + + G Sbjct: 79 MTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFASL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ + G + Sbjct: 138 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAGWWEAVQQ 197 Query: 183 CCNFLMDR---------AELDLLG-WE 199 + L+ + A LD+ G W+ Sbjct: 198 ESDLLVSKRIRVTNEENAYLDIKGAWQ 224 >gi|329114834|ref|ZP_08243590.1| Ribonuclease D [Acetobacter pomorum DM001] gi|326695731|gb|EGE47416.1| Ribonuclease D [Acetobacter pomorum DM001] Length = 406 Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 2/172 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + VDTE + LC+VQ+ V I +A G P L + D K+FH Sbjct: 36 SFVTVDTEFMREQTYWPELCLVQIGATHDIVLIDALAEGIDLTP-LKNLFADTAVLKVFH 94 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F P+F T++A+ + + +Q G + L G I K+ + +DW Sbjct: 95 AARQDLEIFLHLFDALPTPLFDTQVAAMVA-GFGDQVGYDSLVGSLTGHMIDKSHRFTDW 153 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 S LS QL YAA DV L + + +KL++ R D + L D A Sbjct: 154 SVRPLSPAQLTYAAGDVTWLRLVYERLVKKLEQEQRLDWVAAEMAELEDPAT 205 >gi|163746426|ref|ZP_02153784.1| ribonuclease D [Oceanibulbus indolifex HEL-45] gi|161380311|gb|EDQ04722.1| ribonuclease D [Oceanibulbus indolifex HEL-45] Length = 385 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 13/216 (6%) Query: 1 MTTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDII 54 M TI D+ C AARY D + VDTE L +LC+VQL+ V + Sbjct: 1 MKTITTT-ADLAQFCEEAARY-DYVTVDTEFLRERTYYSKLCLVQLAMPGTDDSNAVLVD 58 Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 +A G P L + D K+FH R D+ + F V P+F T++A+ + + Sbjct: 59 PLAEGISLEP-LYTLFRDTSVVKVFHAARQDLEIFFVDAEVFPEPLFDTQVAAMVC-GFG 116 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 Q G + ++++ + K + +DWS L+D Q YA +DV HL + KL+ Sbjct: 117 EQVGYETLVRKIAHQALDKTSRFTDWSRRPLTDAQKTYALADVTHLRQIYEFLARKLEET 176 Query: 175 GRSDLATSCCNFLMDRAEL---DLLGWENVDIFSHS 207 GR+ L+ W+ V ++S Sbjct: 177 GRARWVAEELETLLSPDTYVTQPQDAWKRVKTRTNS 212 >gi|260576346|ref|ZP_05844337.1| ribonuclease D [Rhodobacter sp. SW2] gi|259021417|gb|EEW24722.1| ribonuclease D [Rhodobacter sp. SW2] Length = 385 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT---VDIIRI 56 M TI D+ C AA+ + +DTE L +LC++Q++ T V + I Sbjct: 1 MQTITTTT-DLADFCEAAKREPYVTIDTEFLRERTYWSKLCLIQMALPGKTGRAVLVDPI 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + + L + + K+FH R D+ + F P+F T++A+ + Y Q Sbjct: 60 EGPEMSLEPLYDLFRHQATVKVFHAARQDLEIFFVEGNSFPEPLFDTQVAAMVC-GYGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +K++ N+ K + +DWS LS+ Q YA +DV HL + ++ + GR Sbjct: 119 VGYETLVKKIAKENLDKTSRFTDWSRRPLSEAQSDYALADVTHLRVVYESLAAQIAKSGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 + L D A W+ V + S Sbjct: 179 QKWVEEELSILTDPATYTTHPEEAWQRVKTRTTS 212 >gi|158425285|ref|YP_001526577.1| ribonuclease D [Azorhizobium caulinodans ORS 571] gi|158332174|dbj|BAF89659.1| ribonuclease D [Azorhizobium caulinodans ORS 571] Length = 383 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 2/193 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I E A D + VDTE L +LC++Q++ D + I +A G Sbjct: 1 MDPITSTEALAAACERLSRHDFVTVDTEFLRETTFWPKLCVIQVASVDEAIIIDALAEGL 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ +EK +K+FH GR DI ++++ + PVF T++A+ + Y + Sbjct: 61 DLAP-FFALMGNEKVKKVFHAGRQDIEIVWHLAEIIPHPVFDTQVAAMVL-GYGDSISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ + G I K+ + +DWS LS QL YA +DV HL + + E L+ GR+D Sbjct: 119 QLVQRITGHAIDKSSRFTDWSRRPLSQAQLTYAVADVTHLRDVYKKLMEDLESRGRADWM 178 Query: 181 TSCCNFLMDRAEL 193 N L + Sbjct: 179 GEEMNILTSPSTY 191 >gi|254448397|ref|ZP_05061858.1| ribonuclease D [gamma proteobacterium HTCC5015] gi|198262010|gb|EDY86294.1| ribonuclease D [gamma proteobacterium HTCC5015] Length = 384 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 3/178 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + + +DTE L +LC++Q++ D I +A + L +L DE Sbjct: 20 LAGSEWLTLDTEFLREKTYYPQLCLIQIANHDLIACIDPLA--IDDLTPLYALLHDESIV 77 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D +L+ + +PVF T++A+ L Y +Q G ++++ G+ + K+Q Sbjct: 78 KVLHAAVQDQEILYQSSQQPPKPVFDTQVAASLL-GYGDQMGYAKLVEKICGVQLDKSQS 136 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 +DWS L+++Q+ YAA DV HL + +L+RLGRSD + L + D Sbjct: 137 RTDWSRRPLNEKQIDYAADDVRHLREIYQHLKTELERLGRSDWLQKDFDDLANPQRYD 194 >gi|311279296|ref|YP_003941527.1| ribonuclease D [Enterobacter cloacae SCF1] gi|308748491|gb|ADO48243.1| ribonuclease D [Enterobacter cloacae SCF1] Length = 386 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + A C AAR AIA+DTE + +L ++Q+ GD V I ++ + Sbjct: 16 TQDDALKAACDAARGAPAIALDTEFVRTRTYYPQLGLIQMYDGDSVVLIDPLS--ITDWT 73 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L+D K H G D+ V TFGV P+ T+I + G ++ Sbjct: 74 PFRDLLLDGAVTKYLHAGSEDLEVFLNTFGVLPEPLIDTQILAAFC-GRPMSWGFAAMVE 132 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E GI + K++ +DW A L++ Q YAA+DV +L + + + + G A C Sbjct: 133 EYTGIALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMAETEASGWLPAALDEC 192 Query: 185 NFLMDRAE 192 + R Sbjct: 193 RLMQQRRR 200 >gi|260776343|ref|ZP_05885238.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450] gi|260607566|gb|EEX33831.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450] Length = 371 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 13/204 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + CA AR D + +DTE + +L ++QL G+ I + Sbjct: 5 IITRPDQLEKVCAQARNADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDP--TVIDD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V +FG P+ T++ + + G Sbjct: 63 MTAFVHLLKDTSVLKVLHACGEDLEVFNNSFGCLPYPMVDTQLMAAFL-GHGLSTGFASL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ LG+ + K++ +DW A L+D+QL YAA+DV +L L + E++ + G + A Sbjct: 122 VESYLGVELDKSESRTDWLARPLTDKQLDYAAADVHYLLPLYEKLLEEITQAGWWEAAQQ 181 Query: 183 CCNFL---------MDRAELDLLG 197 + L ++A LD+ G Sbjct: 182 ESDLLATKRIKSLDPEKAYLDVKG 205 >gi|258541225|ref|YP_003186658.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256632303|dbj|BAH98278.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256635360|dbj|BAI01329.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03] gi|256638415|dbj|BAI04377.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07] gi|256641469|dbj|BAI07424.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22] gi|256644524|dbj|BAI10472.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26] gi|256647579|dbj|BAI13520.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32] gi|256650632|dbj|BAI16566.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653623|dbj|BAI19550.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12] Length = 402 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 2/172 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + VDTE + LC+VQ+ + V I +A G P L + VD K+FH Sbjct: 32 SFVTVDTEFMREQTYWPELCLVQIGATNDVVLIDALADGIDLTP-LKNLFVDTAVLKVFH 90 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D+ + + F P+F T++A+ + + +Q G + L G I K+ + +DW Sbjct: 91 AARQDLEIFLHLFDALPTPLFDTQVAAMVA-GFGDQVGYDSLVGSLTGHMIDKSHRFTDW 149 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 S LS QL YAA DV L + + +KL++ R D + L D A Sbjct: 150 SVRPLSPAQLTYAAGDVTWLRLVYERLVKKLEQEQRLDWVAAEMAELEDPAT 201 >gi|163803649|ref|ZP_02197513.1| cell division topological specificity factor MinE [Vibrio sp. AND4] gi|159172559|gb|EDP57420.1| cell division topological specificity factor MinE [Vibrio sp. AND4] Length = 372 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 4/194 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ CA AR D + +DTE + + +L ++QL G I + Sbjct: 5 IIKKNKDLEEVCALAREADVVMLDTEFVRIRTFYPQLGLIQLFDGKQLSLIDP--TELTD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + V +L D K+ H D+ V FG P+ T++ + + G Sbjct: 63 MTSFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ + G + Sbjct: 122 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNQAGWWEAVQQ 181 Query: 183 CCNFLMDRAELDLL 196 + L+ + D+ Sbjct: 182 ESDLLVSKRIRDIN 195 >gi|86147639|ref|ZP_01065948.1| ribonuclease D [Vibrio sp. MED222] gi|85834550|gb|EAQ52699.1| ribonuclease D [Vibrio sp. MED222] Length = 397 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ C AR D + +DTE + +L ++QL G+ I IA Sbjct: 30 IITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIA--LDE 87 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 VG+L D K+ H D+ V FG P+ T+I + + G Sbjct: 88 MTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-GHGLSTGFAAL 146 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + E +G+++ K++ +DW A LS +QL YAA+DV +L + + EK+ G + A Sbjct: 147 VSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKILEKVMEAGWWEAAQQ 206 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + D A LD+ G W+ Sbjct: 207 ESDLQVAKRIRKANPDNAYLDIKGAWQ 233 >gi|126697114|ref|YP_001092000.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301] gi|126544157|gb|ABO18399.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301] Length = 211 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 123/208 (59%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I + D+ + + +A+DTE +GL+ RDRLC+VQ+ I+I Sbjct: 6 KNIDLLYSDLTVDLYNLYKKSSYLAIDTEAMGLIHGRDRLCLVQICNEFKRTSCIKIELN 65 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 ++P+L +L DEK KIFHY RFD+A L + + +FCTKIAS+L RTYTN+HGL Sbjct: 66 TSSSPHLKKLLEDEKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGL 125 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 KD + ELLGI + K+ QSSDW + +DL+ +QL YAA+DV +L + L+R R + Sbjct: 126 KDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMHKLKVILEREDRYE 185 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C + A+LD+L + N IF H Sbjct: 186 LAQKCFETVSVHADLDILKFSN--IFEH 211 >gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037] gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037] Length = 354 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ CA AR D + +DTE + + +L ++QL G I + Sbjct: 21 IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + + +L D K+ H D+ V FG P+ T++ + + G Sbjct: 79 MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197 Query: 183 CCNFLMDR---------AELDLLG-WE 199 + L+ + A LD+ G W+ Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKGAWQ 224 >gi|84393455|ref|ZP_00992211.1| ribonuclease D [Vibrio splendidus 12B01] gi|84375883|gb|EAP92774.1| ribonuclease D [Vibrio splendidus 12B01] Length = 313 Score = 230 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 13/204 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ C AR D + +DTE + +L ++QL G+ I IA Sbjct: 30 IITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIA--LDE 87 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 VG+L D K+ H D+ V FG P+ T+I + + G Sbjct: 88 MTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-GHGLSTGFAAL 146 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + E +G+++ K++ +DW A LS +QL YAA+DV +L + + EK+ G + A Sbjct: 147 VSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQQ 206 Query: 183 CCNFL---------MDRAELDLLG 197 + D A LD+ G Sbjct: 207 ESDLQVAKRIRKANPDNAYLDIKG 230 >gi|153840116|ref|ZP_01992783.1| ribonuclease D [Vibrio parahaemolyticus AQ3810] gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810] Length = 341 Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ CA AR D + +DTE + + +L ++QL G I + Sbjct: 21 IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + + +L D K+ H D+ V FG P+ T++ + + G Sbjct: 79 MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197 Query: 183 CCNFLMDR---------AELDLLG-WE 199 + L+ + A LD+ G W+ Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKGAWQ 224 >gi|299133731|ref|ZP_07026925.1| ribonuclease D [Afipia sp. 1NLS2] gi|298591567|gb|EFI51768.1| ribonuclease D [Afipia sp. 1NLS2] Length = 382 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I E + A CA + VDTE L LC+VQL+ D V + +A G Sbjct: 1 MELITSTE-QLAAVCARLARHPFVTVDTEFLRETTYYPLLCVVQLASSDEAVVVDALAEG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ DEK K+FH R DI ++++ G+ PVF T++A+ + Y + Sbjct: 60 IDLKP-FFDLMADEKVLKVFHAARQDIEIVWHLAGIVPHPVFDTQVAAMVL-GYGDSIAY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + + G + K + +DWS L+ EQ YA +DV HL + L++ R+D Sbjct: 118 DQLVGRITGHKLDKTHRFTDWSRRPLTKEQSAYALADVTHLRDVFTALDADLKKRKRADW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + + L + + WE + Sbjct: 178 VSEEMDVLTSPSTYNAPPERAWERLKTR 205 >gi|139437245|ref|ZP_01771405.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC 25986] gi|133776892|gb|EBA40712.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC 25986] Length = 377 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 3/190 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I H+ + AR DAIAVDTE L RLC+VQ++ +V + + + Sbjct: 3 ISTHQALLDFCQRAREFDAIAVDTEFLRERTFHPRLCLVQIATPAESVAVDPL--VIDDL 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L ++ DE K+FH D+ V+ +T GV RP+F T++A+ Q + Sbjct: 61 SPLAELMADESVTKVFHACSQDMEVMLHTVGVLPRPIFDTQVAAAFL-GERQQISYGALV 119 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + G+++ K + +DWS L+D+Q++YA DV +L + +L+ LGR D Sbjct: 120 QTFCGVSLPKTESLTDWSRRPLTDKQIEYAIDDVKYLIVAYTEMMSRLRELGRVDWVLDE 179 Query: 184 CNFLMDRAEL 193 L D + Sbjct: 180 LRPLADESHY 189 >gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633] gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633] gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329] Length = 388 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ CA AR D + +DTE + + +L ++QL G I + Sbjct: 21 IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + + +L D K+ H D+ V FG P+ T++ + + G Sbjct: 79 MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197 Query: 183 CCNFLMDR---------AELDLLG-WE 199 + L+ + A LD+ G W+ Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKGAWQ 224 >gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034] gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034] Length = 372 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ CA AR D + +DTE + + +L ++QL G I + Sbjct: 21 IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + + +L D K+ H D+ V FG P+ T++ + + G Sbjct: 79 MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197 Query: 183 CCNFLMDR---------AELDLLG-WE 199 + L+ + A LD+ G W+ Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKGAWQ 224 >gi|58698273|ref|ZP_00373191.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae] gi|225630014|ref|YP_002726805.1| Ribonuclease D [Wolbachia sp. wRi] gi|225677056|ref|ZP_03788062.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|58535197|gb|EAL59278.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae] gi|225590902|gb|EEH12123.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591995|gb|ACN95014.1| Ribonuclease D [Wolbachia sp. wRi] Length = 392 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 10/201 (4%) Query: 9 GDIPAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 DI A+ IAVDTE + +L ++Q+S G+ + I+ + + + Sbjct: 10 EDICEGLIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIK 68 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +++++ K+FH R DI L F P+F T++A+ Y + G +++ Sbjct: 69 KIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQ 128 Query: 128 GINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 GI + K ++SDW LS++QL YA +DVVHL+ L KL+ R Sbjct: 129 GIALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMES 188 Query: 187 LMDRAEL-----DLLGWENVD 202 ++D + D W+ + Sbjct: 189 IVDINKYLHSPKD--AWKRIK 207 >gi|294677027|ref|YP_003577642.1| ribonuclease D [Rhodobacter capsulatus SB 1003] gi|294475847|gb|ADE85235.1| ribonuclease D-2 [Rhodobacter capsulatus SB 1003] Length = 384 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 8/213 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIA 57 M TI + + C A+ + VDTE L +LC+VQ++ +G ++ Sbjct: 1 MQTITTTDA-LEQFCTRAKAAPYVTVDTEFLRERTYWSKLCLVQMALPGKEGEAVLVDPL 59 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + L + + K+FH R D+ + F GV P+F T++A+ + + Q Sbjct: 60 VEGLSLEPLYDLFRHQATVKVFHAARQDLEIFFTEAGVFPLPLFDTQVAAMVC-GFGEQV 118 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G + +K++ ++ K + +DWS L+D Q YA +DV HL + +++L++ GR Sbjct: 119 GYETLVKKIAKQSLDKTSRFTDWSRRPLTDAQKAYALADVTHLRVIYEFLSKELRKSGRE 178 Query: 178 DLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 L++ WE V ++S Sbjct: 179 KWVEEEEAILLNPETYITRPEDAWERVKTRTNS 211 >gi|114768885|ref|ZP_01446511.1| ribonuclease D [alpha proteobacterium HTCC2255] gi|114549802|gb|EAU52683.1| ribonuclease D [alpha proteobacterium HTCC2255] Length = 386 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 13/216 (6%) Query: 1 MTTIRVHEG--DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDII 54 M I + D +C+A + + +DTE L +LC+VQ++ D V I Sbjct: 1 MIIITKTQELIDFCKKCSA--YEYVTLDTEFLRERTYYSKLCLVQMAHPGNTEDSAVLID 58 Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 ++ P L + + K+FH R D+ + F + P F T++A+ + + Sbjct: 59 PLSPDLSLDP-LYELFKNPNVVKVFHAARQDLEIFFIDKKIIPFPFFDTQVAAMVC-GFG 116 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 Q G + ++ + + K+ + +DWSA LS++Q+ YA DV +L + + K++ Sbjct: 117 EQVGYEKLVRSICNEGLDKSSRFTDWSARPLSNKQMHYAIGDVTYLREIYEFLSNKIKNN 176 Query: 175 GRSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 R LMD + W V S S Sbjct: 177 KRQAWVEEELKILMDPETYTIDPKYAWRRVKTRSSS 212 >gi|209885458|ref|YP_002289314.1| ribonuclease D [Oligotropha carboxidovorans OM5] gi|209873654|gb|ACI93450.1| ribonuclease D [Oligotropha carboxidovorans OM5] Length = 386 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I E + A C + VDTE L LC+VQL+ D V + +A G Sbjct: 1 MELISTTE-QLKAVCERLAQHPFVTVDTEFLRETTYYPLLCVVQLASTDEAVVVDALAEG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ +EK K+FH R DI ++++ + PVF T++A+ + Y + Sbjct: 60 IDLKP-FFDLMANEKVLKVFHAARQDIEIVWHLANIVPHPVFDTQVAAMVL-GYGDSIAY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + + G + K + +DWS L+ EQ YA +DV HL + L L++ R+D Sbjct: 118 DQLVGRITGHKLDKTHRFTDWSRRPLTQEQTTYALADVTHLRDVFLVLDADLKKRNRADW 177 Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204 + L A WE + Sbjct: 178 VSEEMQILTSPATYHTPPERAWERLKTR 205 >gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466] gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466] Length = 325 Score = 229 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ CA AR D + +DTE + + +L ++QL G I + Sbjct: 21 IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + + +L D K+ H D+ V FG P+ T++ + + G Sbjct: 79 MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197 Query: 183 CCNFLMDR---------AELDLLG-WE 199 + L+ + A LD+ G W+ Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKGAWQ 224 >gi|261253420|ref|ZP_05945993.1| ribonuclease D [Vibrio orientalis CIP 102891] gi|260936811|gb|EEX92800.1| ribonuclease D [Vibrio orientalis CIP 102891] Length = 371 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 4/184 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + C +AR VD + +DTE + +L ++QL G+ I ++ Sbjct: 5 IITQSSQLEEVCQSARNVDVVMLDTEFVRTRTYYPQLGLIQLFDGEKLSLIDP--TVIED 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V +FG P+ T++ + + G Sbjct: 63 MTAFVELLKDTSVLKVLHACGEDLEVFHNSFGCLPYPMVDTQLMAAFL-GHGLSTGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ LG+ + K++ +DW A LSD+QL+YAA+DV +L L Q EK+ + G + A Sbjct: 122 VENYLGVELDKSESRTDWLARPLSDKQLEYAAADVYYLQPLYEQLFEKITQAGWWEAAQQ 181 Query: 183 CCNF 186 + Sbjct: 182 ESDL 185 >gi|262276702|ref|ZP_06054497.1| ribonuclease D [alpha proteobacterium HIMB114] gi|262225133|gb|EEY75590.1| ribonuclease D [alpha proteobacterium HIMB114] Length = 204 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 74/198 (37%), Positives = 120/198 (60%), Gaps = 3/198 (1%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ + + + +IA+D E GL P D+L ++Q+ G V ++ G+ +AP L Sbjct: 10 NDLEDDSSLKNASSIAIDGEFSGLNPLTDKLHLLQICDGSNFVHFVKF-DGEYDAPKLKK 68 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L + +KIFH+GR D+ + + V+ ++ TKIAS++ R +T+ HGLKD ++L+ Sbjct: 69 VLENNSIKKIFHFGRADLGFIKKHLNINVKNIYDTKIASKICRKFTSSHGLKDLSRDLIN 128 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 IN+SK Q+SDW + SD+Q++YAA+DV+HLH ++ + + L R + +LA C FL Sbjct: 129 INLSKEHQTSDWGKKEYSDDQIKYAANDVLHLHKIKEELDKILIRENKVELAEKCFQFLE 188 Query: 189 DRAELDLLGWENVDIFSH 206 R +LDL G DIF H Sbjct: 189 TRTDLDLCGLG--DIFEH 204 >gi|170770112|ref|ZP_02904565.1| ribonuclease D [Escherichia albertii TW07627] gi|170121069|gb|EDS90000.1| ribonuclease D [Escherichia albertii TW07627] Length = 375 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 7/200 (3%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVRYLLPITTKLMAETEASGWLPAALDEC 183 Query: 185 NFLMDRAELDLL---GWENV 201 + R + L W ++ Sbjct: 184 RLMQIRRQEVLAPEEAWRDI 203 >gi|332557401|ref|ZP_08411723.1| ribonuclease D [Rhodobacter sphaeroides WS8N] gi|332275113|gb|EGJ20428.1| ribonuclease D [Rhodobacter sphaeroides WS8N] Length = 385 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M TI E + A C AA+ + +DTE L +LC++Q++ G+ V + Sbjct: 1 MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGE-AVLVDP 58 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 I + L + E K+FH R D+ + F P+F T++A+ + + Sbjct: 59 IEGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + +K++ + K + +DWS LSD Q YA +DV HL + + ++++ G Sbjct: 118 QVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNG 177 Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 R L D + W + + S Sbjct: 178 RQKWVEEELAILTDPETYTVRPEEAWLRIKTRTTS 212 >gi|221638369|ref|YP_002524631.1| Ribonuclease D [Rhodobacter sphaeroides KD131] gi|221159150|gb|ACM00130.1| Ribonuclease D [Rhodobacter sphaeroides KD131] Length = 385 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M TI E + A C AA+ + +DTE L +LC++Q++ G+ V + Sbjct: 1 MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGE-AVLVDP 58 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 I + L + E K+FH R D+ + F P+F T++A+ + + Sbjct: 59 IEGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + +K++ + K + +DWS LSD Q YA +DV HL + + ++++ G Sbjct: 118 QVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNG 177 Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 R L D + W + + S Sbjct: 178 RQKWVEEELAILTDPETYTVRPEEAWLRIKTRTTS 212 >gi|91228923|ref|ZP_01262822.1| ribonuclease D [Vibrio alginolyticus 12G01] gi|91187531|gb|EAS73864.1| ribonuclease D [Vibrio alginolyticus 12G01] Length = 277 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 13/204 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ C AR D + +DTE + + +L ++QL G+ I + Sbjct: 18 IITKNKDLEEVCTHAREADVVMLDTEFVRIRTFYPQLGLIQLFDGNRLSLIDP--TELTD 75 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T++ + + G Sbjct: 76 MTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFASL 134 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ + G + Sbjct: 135 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAGWWEAVQQ 194 Query: 183 CCNFLMDR---------AELDLLG 197 + L+ + A LD+ G Sbjct: 195 ESDLLVSKRIRVTNEENAYLDIKG 218 >gi|77462516|ref|YP_352020.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1] gi|126461450|ref|YP_001042564.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029] gi|77386934|gb|ABA78119.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1] gi|126103114|gb|ABN75792.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029] Length = 385 Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55 M TI E + A C AA+ + +DTE L +LC++Q++ G+ V + Sbjct: 1 MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGE-AVLVDP 58 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 I + L + E K+FH R D+ + F P+F T++A+ + + Sbjct: 59 IEGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + +K++ + K + +DWS LSD Q YA +DV HL + + ++++ G Sbjct: 118 QVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNG 177 Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 R L D + W + + S Sbjct: 178 RQKWVEEELAILTDPETYTVRPEEAWLRIKTRTTS 212 >gi|323175119|gb|EFZ60733.1| ribonuclease D [Escherichia coli LT-68] Length = 375 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|260868323|ref|YP_003234725.1| ribonuclease D [Escherichia coli O111:H- str. 11128] gi|257764679|dbj|BAI36174.1| ribonuclease D [Escherichia coli O111:H- str. 11128] Length = 375 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|260855663|ref|YP_003229554.1| ribonuclease D [Escherichia coli O26:H11 str. 11368] gi|257754312|dbj|BAI25814.1| ribonuclease D [Escherichia coli O26:H11 str. 11368] Length = 375 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|99034557|ref|ZP_01314528.1| hypothetical protein Wendoof_01000660 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 409 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%) Query: 13 AECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 E A+ IAVDTE + +L ++Q+S G+ + I+ + + + +++ Sbjct: 31 EELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDTLVPEIDLSFIKKIML 89 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 ++ K+FH R DI L F P+F T++A+ Y + G +++ GI + Sbjct: 90 NQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIAL 149 Query: 132 SK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K ++SDW LS++QL YA +DVVHL+ L KL+ R ++D Sbjct: 150 DKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMESIVDI 209 Query: 191 AEL-----DLLGWENVD 202 + D W+ + Sbjct: 210 NKYLHSPKD--AWKRIK 224 >gi|157161268|ref|YP_001458586.1| ribonuclease D [Escherichia coli HS] gi|188495947|ref|ZP_03003217.1| ribonuclease D [Escherichia coli 53638] gi|194439630|ref|ZP_03071702.1| ribonuclease D [Escherichia coli 101-1] gi|254161863|ref|YP_003044971.1| ribonuclease D [Escherichia coli B str. REL606] gi|157066948|gb|ABV06203.1| ribonuclease D [Escherichia coli HS] gi|188491146|gb|EDU66249.1| ribonuclease D [Escherichia coli 53638] gi|194421451|gb|EDX37466.1| ribonuclease D [Escherichia coli 101-1] gi|242377525|emb|CAQ32279.1| RNase D [Escherichia coli BL21(DE3)] gi|253973764|gb|ACT39435.1| ribonuclease D [Escherichia coli B str. REL606] gi|253977958|gb|ACT43628.1| ribonuclease D [Escherichia coli BL21(DE3)] Length = 375 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|15831767|ref|NP_310540.1| ribonuclease D [Escherichia coli O157:H7 str. Sakai] gi|157156075|ref|YP_001463104.1| ribonuclease D [Escherichia coli E24377A] gi|187776027|ref|ZP_02799888.2| ribonuclease D [Escherichia coli O157:H7 str. EC4196] gi|188024852|ref|ZP_02774388.2| ribonuclease D [Escherichia coli O157:H7 str. EC4113] gi|189010430|ref|ZP_02807242.2| ribonuclease D [Escherichia coli O157:H7 str. EC4076] gi|189402540|ref|ZP_02783120.2| ribonuclease D [Escherichia coli O157:H7 str. EC4401] gi|189403490|ref|ZP_02795783.2| ribonuclease D [Escherichia coli O157:H7 str. EC4486] gi|189404421|ref|ZP_02789258.2| ribonuclease D [Escherichia coli O157:H7 str. EC4501] gi|189405084|ref|ZP_02813223.2| ribonuclease D [Escherichia coli O157:H7 str. EC869] gi|189406051|ref|ZP_02826040.2| ribonuclease D [Escherichia coli O157:H7 str. EC508] gi|191168835|ref|ZP_03030609.1| ribonuclease D [Escherichia coli B7A] gi|193066361|ref|ZP_03047410.1| ribonuclease D [Escherichia coli E22] gi|193071290|ref|ZP_03052209.1| ribonuclease D [Escherichia coli E110019] gi|194430003|ref|ZP_03062510.1| ribonuclease D [Escherichia coli B171] gi|208810493|ref|ZP_03252369.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206] gi|208816683|ref|ZP_03257803.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045] gi|208818758|ref|ZP_03259078.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042] gi|209396542|ref|YP_002270881.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115] gi|209919169|ref|YP_002293253.1| ribonuclease D [Escherichia coli SE11] gi|217328853|ref|ZP_03444934.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588] gi|218554376|ref|YP_002387289.1| ribonuclease D [Escherichia coli IAI1] gi|218695366|ref|YP_002403033.1| ribonuclease D [Escherichia coli 55989] gi|218705302|ref|YP_002412821.1| ribonuclease D [Escherichia coli UMN026] gi|254793426|ref|YP_003078263.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359] gi|260844148|ref|YP_003221926.1| ribonuclease D [Escherichia coli O103:H2 str. 12009] gi|291282984|ref|YP_003499802.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615] gi|293446176|ref|ZP_06662598.1| ribonuclease D [Escherichia coli B088] gi|332279045|ref|ZP_08391458.1| ribonuclease D [Shigella sp. D9] gi|13361980|dbj|BAB35936.1| RNase D, processes tRNA precursor [Escherichia coli O157:H7 str. Sakai] gi|157078105|gb|ABV17813.1| ribonuclease D [Escherichia coli E24377A] gi|187769404|gb|EDU33248.1| ribonuclease D [Escherichia coli O157:H7 str. EC4196] gi|188016291|gb|EDU54413.1| ribonuclease D [Escherichia coli O157:H7 str. EC4113] gi|189000217|gb|EDU69203.1| ribonuclease D [Escherichia coli O157:H7 str. EC4076] gi|189355025|gb|EDU73444.1| ribonuclease D [Escherichia coli O157:H7 str. EC4401] gi|189360343|gb|EDU78762.1| ribonuclease D [Escherichia coli O157:H7 str. EC4486] gi|189365729|gb|EDU84145.1| ribonuclease D [Escherichia coli O157:H7 str. EC4501] gi|189371954|gb|EDU90370.1| ribonuclease D [Escherichia coli O157:H7 str. EC869] gi|189376734|gb|EDU95150.1| ribonuclease D [Escherichia coli O157:H7 str. EC508] gi|190901115|gb|EDV60890.1| ribonuclease D [Escherichia coli B7A] gi|192926009|gb|EDV80654.1| ribonuclease D [Escherichia coli E22] gi|192955385|gb|EDV85869.1| ribonuclease D [Escherichia coli E110019] gi|194411930|gb|EDX28245.1| ribonuclease D [Escherichia coli B171] gi|208725009|gb|EDZ74716.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206] gi|208731026|gb|EDZ79715.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045] gi|208738881|gb|EDZ86563.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042] gi|209157942|gb|ACI35375.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115] gi|209768038|gb|ACI82331.1| RNase D [Escherichia coli] gi|209768040|gb|ACI82332.1| RNase D [Escherichia coli] gi|209768042|gb|ACI82333.1| RNase D [Escherichia coli] gi|209768044|gb|ACI82334.1| RNase D [Escherichia coli] gi|209768046|gb|ACI82335.1| RNase D [Escherichia coli] gi|209912428|dbj|BAG77502.1| ribonuclease D [Escherichia coli SE11] gi|217318200|gb|EEC26627.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588] gi|218352098|emb|CAU97835.1| ribonuclease D [Escherichia coli 55989] gi|218361144|emb|CAQ98727.1| ribonuclease D [Escherichia coli IAI1] gi|218432399|emb|CAR13290.1| ribonuclease D [Escherichia coli UMN026] gi|254592826|gb|ACT72187.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359] gi|257759295|dbj|BAI30792.1| ribonuclease D [Escherichia coli O103:H2 str. 12009] gi|290762857|gb|ADD56818.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615] gi|291323006|gb|EFE62434.1| ribonuclease D [Escherichia coli B088] gi|332101397|gb|EGJ04743.1| ribonuclease D [Shigella sp. D9] Length = 375 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|281178870|dbj|BAI55200.1| ribonuclease D [Escherichia coli SE15] Length = 375 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|26248062|ref|NP_754102.1| ribonuclease D [Escherichia coli CFT073] gi|91211019|ref|YP_541005.1| ribonuclease D [Escherichia coli UTI89] gi|215487015|ref|YP_002329446.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69] gi|218558666|ref|YP_002391579.1| ribonuclease D [Escherichia coli S88] gi|218689740|ref|YP_002397952.1| ribonuclease D [Escherichia coli ED1a] gi|26108465|gb|AAN80667.1|AE016761_242 Ribonuclease D [Escherichia coli CFT073] gi|91072593|gb|ABE07474.1| ribonuclease D [Escherichia coli UTI89] gi|215265087|emb|CAS09475.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69] gi|218365435|emb|CAR03162.1| ribonuclease D [Escherichia coli S88] gi|218427304|emb|CAR08103.1| ribonuclease D [Escherichia coli ED1a] gi|294489955|gb|ADE88711.1| ribonuclease D [Escherichia coli IHE3034] Length = 375 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|331683306|ref|ZP_08383907.1| ribonuclease D [Escherichia coli H299] gi|331079521|gb|EGI50718.1| ribonuclease D [Escherichia coli H299] Length = 371 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 7/200 (3%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAELDLL---GWENV 201 + R + + W ++ Sbjct: 180 RLMQMRRQEIVAPEDAWRDI 199 >gi|187733914|ref|YP_001880596.1| ribonuclease D [Shigella boydii CDC 3083-94] gi|187430906|gb|ACD10180.1| ribonuclease D [Shigella boydii CDC 3083-94] Length = 375 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I S G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|300904667|ref|ZP_07122502.1| ribonuclease D [Escherichia coli MS 84-1] gi|301305900|ref|ZP_07211983.1| ribonuclease D [Escherichia coli MS 124-1] gi|300403417|gb|EFJ86955.1| ribonuclease D [Escherichia coli MS 84-1] gi|300838826|gb|EFK66586.1| ribonuclease D [Escherichia coli MS 124-1] gi|315257385|gb|EFU37353.1| ribonuclease D [Escherichia coli MS 85-1] gi|323180583|gb|EFZ66128.1| ribonuclease D [Escherichia coli 1180] Length = 371 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|82543793|ref|YP_407740.1| ribonuclease D [Shigella boydii Sb227] gi|81245204|gb|ABB65912.1| RNase D [Shigella boydii Sb227] Length = 375 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I S G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|42520085|ref|NP_966000.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409822|gb|AAS13934.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 392 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%) Query: 13 AECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 E A+ IAVDTE + +L ++Q+S G+ + I+ + + + +++ Sbjct: 14 EELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKKIML 72 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 ++ K+FH R DI L F P+F T++A+ Y + G +++ GI + Sbjct: 73 NQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIAL 132 Query: 132 SK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K ++SDW LS++QL YA +DVVHL+ L KL+ R ++D Sbjct: 133 DKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMESIVDI 192 Query: 191 AEL-----DLLGWENVD 202 + D W+ + Sbjct: 193 NKYLHSPKD--AWKRIK 207 >gi|170680016|ref|YP_001743442.1| ribonuclease D [Escherichia coli SMS-3-5] gi|218699628|ref|YP_002407257.1| ribonuclease D [Escherichia coli IAI39] gi|170517734|gb|ACB15912.1| ribonuclease D [Escherichia coli SMS-3-5] gi|218369614|emb|CAR17383.1| ribonuclease D [Escherichia coli IAI39] Length = 375 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|323186982|gb|EFZ72300.1| ribonuclease D [Escherichia coli RN587/1] Length = 371 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|323152955|gb|EFZ39224.1| ribonuclease D [Escherichia coli EPECa14] Length = 371 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|320194484|gb|EFW69115.1| Ribonuclease D [Escherichia coli WV_060327] Length = 375 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 5 LITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L D K H G D+ V FG +P+ T+I + G Sbjct: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASM 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A Sbjct: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 Query: 183 CCNFLMDRAE 192 C + R + Sbjct: 182 ECRLMQMRRQ 191 >gi|16129758|ref|NP_416318.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655] gi|89108643|ref|AP_002423.1| ribonuclease D [Escherichia coli str. K-12 substr. W3110] gi|170081460|ref|YP_001730780.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B] gi|238901018|ref|YP_002926814.1| ribonuclease D [Escherichia coli BW2952] gi|301019362|ref|ZP_07183546.1| ribonuclease D [Escherichia coli MS 196-1] gi|133152|sp|P09155|RND_ECOLI RecName: Full=Ribonuclease D; Short=RNase D gi|75765643|pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An Exoribonuclease Involved In Structured Rna Processing gi|581215|emb|CAA30098.1| unnamed protein product [Escherichia coli] gi|1736427|dbj|BAA15599.1| ribonuclease D [Escherichia coli str. K12 substr. W3110] gi|1788105|gb|AAC74874.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655] gi|169889295|gb|ACB03002.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B] gi|238863466|gb|ACR65464.1| ribonuclease D [Escherichia coli BW2952] gi|299882254|gb|EFI90465.1| ribonuclease D [Escherichia coli MS 196-1] gi|309702026|emb|CBJ01340.1| ribonuclease D [Escherichia coli ETEC H10407] gi|315136445|dbj|BAJ43604.1| ribonuclease D [Escherichia coli DH1] gi|226093|prf||1410308A ribonuclease D Length = 375 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|253773243|ref|YP_003036074.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|297516497|ref|ZP_06934883.1| ribonuclease D [Escherichia coli OP50] gi|300927881|ref|ZP_07143442.1| ribonuclease D [Escherichia coli MS 187-1] gi|312969840|ref|ZP_07784023.1| ribonuclease D [Escherichia coli 1827-70] gi|253324287|gb|ACT28889.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300464070|gb|EFK27563.1| ribonuclease D [Escherichia coli MS 187-1] gi|310338125|gb|EFQ03214.1| ribonuclease D [Escherichia coli 1827-70] gi|323961858|gb|EGB57457.1| ribonuclease D [Escherichia coli H489] gi|323972689|gb|EGB67892.1| ribonuclease D [Escherichia coli TA007] Length = 371 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|191171723|ref|ZP_03033270.1| ribonuclease D [Escherichia coli F11] gi|190908053|gb|EDV67645.1| ribonuclease D [Escherichia coli F11] gi|284921723|emb|CBG34795.1| ribonuclease D [Escherichia coli 042] Length = 375 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|195937492|ref|ZP_03082874.1| ribonuclease D [Escherichia coli O157:H7 str. EC4024] gi|256018008|ref|ZP_05431873.1| ribonuclease D [Shigella sp. D9] gi|261227700|ref|ZP_05941981.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK2000] gi|261258135|ref|ZP_05950668.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK966] gi|293405300|ref|ZP_06649292.1| ribonuclease D [Escherichia coli FVEC1412] gi|298380942|ref|ZP_06990541.1| ribonuclease D [Escherichia coli FVEC1302] gi|300816311|ref|ZP_07096533.1| ribonuclease D [Escherichia coli MS 107-1] gi|300823140|ref|ZP_07103273.1| ribonuclease D [Escherichia coli MS 119-7] gi|300899043|ref|ZP_07117330.1| ribonuclease D [Escherichia coli MS 198-1] gi|300917626|ref|ZP_07134277.1| ribonuclease D [Escherichia coli MS 115-1] gi|300924870|ref|ZP_07140803.1| ribonuclease D [Escherichia coli MS 182-1] gi|307314118|ref|ZP_07593730.1| ribonuclease D [Escherichia coli W] gi|309794180|ref|ZP_07688604.1| ribonuclease D [Escherichia coli MS 145-7] gi|331663292|ref|ZP_08364202.1| ribonuclease D [Escherichia coli TA143] gi|331668492|ref|ZP_08369340.1| ribonuclease D [Escherichia coli TA271] gi|331673338|ref|ZP_08374106.1| ribonuclease D [Escherichia coli TA280] gi|331677680|ref|ZP_08378355.1| ribonuclease D [Escherichia coli H591] gi|291427508|gb|EFF00535.1| ribonuclease D [Escherichia coli FVEC1412] gi|298278384|gb|EFI19898.1| ribonuclease D [Escherichia coli FVEC1302] gi|300357343|gb|EFJ73213.1| ribonuclease D [Escherichia coli MS 198-1] gi|300415143|gb|EFJ98453.1| ribonuclease D [Escherichia coli MS 115-1] gi|300418949|gb|EFK02260.1| ribonuclease D [Escherichia coli MS 182-1] gi|300524294|gb|EFK45363.1| ribonuclease D [Escherichia coli MS 119-7] gi|300531001|gb|EFK52063.1| ribonuclease D [Escherichia coli MS 107-1] gi|306906256|gb|EFN36773.1| ribonuclease D [Escherichia coli W] gi|308122085|gb|EFO59347.1| ribonuclease D [Escherichia coli MS 145-7] gi|315061107|gb|ADT75434.1| ribonuclease D [Escherichia coli W] gi|320188500|gb|EFW63162.1| Ribonuclease D [Escherichia coli O157:H7 str. EC1212] gi|320197983|gb|EFW72591.1| Ribonuclease D [Escherichia coli EC4100B] gi|320641655|gb|EFX11043.1| ribonuclease D [Escherichia coli O157:H7 str. G5101] gi|320647014|gb|EFX15847.1| ribonuclease D [Escherichia coli O157:H- str. 493-89] gi|320652296|gb|EFX20594.1| ribonuclease D [Escherichia coli O157:H- str. H 2687] gi|320657898|gb|EFX25660.1| ribonuclease D [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658471|gb|EFX26165.1| ribonuclease D [Escherichia coli O55:H7 str. USDA 5905] gi|320668369|gb|EFX35196.1| ribonuclease D [Escherichia coli O157:H7 str. LSU-61] gi|323158715|gb|EFZ44729.1| ribonuclease D [Escherichia coli E128010] gi|323186449|gb|EFZ71797.1| ribonuclease D [Escherichia coli 1357] gi|323378318|gb|ADX50586.1| ribonuclease D [Escherichia coli KO11] gi|323948311|gb|EGB44299.1| ribonuclease D [Escherichia coli H120] gi|324018061|gb|EGB87280.1| ribonuclease D [Escherichia coli MS 117-3] gi|324118864|gb|EGC12753.1| ribonuclease D [Escherichia coli E1167] gi|326342179|gb|EGD65960.1| Ribonuclease D [Escherichia coli O157:H7 str. 1044] gi|326343729|gb|EGD67491.1| Ribonuclease D [Escherichia coli O157:H7 str. 1125] gi|331059091|gb|EGI31068.1| ribonuclease D [Escherichia coli TA143] gi|331063686|gb|EGI35597.1| ribonuclease D [Escherichia coli TA271] gi|331069536|gb|EGI40923.1| ribonuclease D [Escherichia coli TA280] gi|331074140|gb|EGI45460.1| ribonuclease D [Escherichia coli H591] Length = 371 Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|148978262|ref|ZP_01814780.1| ribonuclease D [Vibrionales bacterium SWAT-3] gi|145962563|gb|EDK27840.1| ribonuclease D [Vibrionales bacterium SWAT-3] Length = 372 Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ C AR D + +DTE + +L ++QL G+ I IA Sbjct: 5 IITQLKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIA--LDE 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 VG+L D K+ H D+ V F P+ T+I + + G Sbjct: 63 MTPFVGLLKDASVLKVLHACGEDLEVFQNAFDCTPTPMVDTQIMAAFL-GHGLSTGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + E +G+++ K++ +DW A LS +QL YAA+DV +L + + EK+ G + A Sbjct: 122 VSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQQ 181 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + D A LD+ G W+ Sbjct: 182 ESDLQVARRIRKVNPDTAYLDIKGAWQ 208 >gi|222825102|dbj|BAH22259.1| putative ribonuclease D [Wolbachia endosymbiont of Cadra cautella] Length = 394 Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 3/182 (1%) Query: 14 ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 E + IA+DTE + +L ++Q+S G+ + I+ + + + M+++ Sbjct: 15 ELMEKDPKFIAIDTEFIRNNLTYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKKMMLN 73 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + K+FH R DI L F P+F T++A+ Y + G +++ GI + Sbjct: 74 QGIIKVFHSCRQDIESLLTVFKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIALD 133 Query: 133 K-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K ++SDW LS++QL YA +DVV+L+ L KL+ R L+D Sbjct: 134 KIKAKNSDWLRRPLSEDQLDYAINDVVYLYDLYQILCNKLEESNRMSWFQEEMELLVDIN 193 Query: 192 EL 193 + Sbjct: 194 KY 195 >gi|91762366|ref|ZP_01264331.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002] gi|91718168|gb|EAS84818.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002] Length = 203 Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 82/204 (40%), Positives = 125/204 (61%), Gaps = 4/204 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I++H D+P + + IAVD E +GL +RD LC++Q+S G+ II++ + + Sbjct: 4 DIKLHTSDLPEDLDLG--NIIAVDGEFMGLNVKRDPLCLIQISTGNSDAHIIQLDREKYD 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L DE KIFHYGR D+A + + + TKIAS+L R+Y++ H LK Sbjct: 62 APNLNKVLSDESITKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +KE + +++SK QSSD+ +LS QL+Y A+DV++LH + + + L R R DL S Sbjct: 122 IKEFMNVDVSKQFQSSDFGG-ELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKS 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL R +LDL +++ DI+SH Sbjct: 181 CLAFLKTRVDLDLALFKD-DIWSH 203 >gi|260366009|ref|ZP_05778494.1| ribonuclease D [Vibrio parahaemolyticus K5030] gi|308111259|gb|EFO48799.1| ribonuclease D [Vibrio parahaemolyticus K5030] Length = 292 Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 13/204 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ CA AR D + +DTE + + +L ++QL G I + Sbjct: 21 IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + + +L D K+ H D+ V FG P+ T++ + + G Sbjct: 79 MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E LG+ + K++ +DW A L+ +QL YAA+DV +L L + +K+ G + Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197 Query: 183 CCNFLMDR---------AELDLLG 197 + L+ + A LD+ G Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKG 221 >gi|82776970|ref|YP_403319.1| ribonuclease D [Shigella dysenteriae Sd197] gi|81241118|gb|ABB61828.1| RNase D [Shigella dysenteriae Sd197] Length = 375 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|320183816|gb|EFW58649.1| Ribonuclease D [Shigella flexneri CDC 796-83] gi|332096395|gb|EGJ01392.1| ribonuclease D [Shigella boydii 3594-74] Length = 371 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I S G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|15802217|ref|NP_288240.1| ribonuclease D [Escherichia coli O157:H7 EDL933] gi|12515844|gb|AAG56793.1|AE005403_4 RNase D, processes tRNA precursor [Escherichia coli O157:H7 str. EDL933] Length = 375 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 5/190 (2%) Query: 4 IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 6 ITTXDA-LASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L D K H G D+ V FG +P+ T+I + G Sbjct: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASM 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A Sbjct: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 Query: 183 CCNFLMDRAE 192 C + R + Sbjct: 182 ECRLMQMRRQ 191 >gi|117623964|ref|YP_852877.1| ribonuclease D [Escherichia coli APEC O1] gi|227885769|ref|ZP_04003574.1| ribonuclease D [Escherichia coli 83972] gi|237705754|ref|ZP_04536235.1| ribonuclease D [Escherichia sp. 3_2_53FAA] gi|300994259|ref|ZP_07180813.1| ribonuclease D [Escherichia coli MS 45-1] gi|301050852|ref|ZP_07197705.1| ribonuclease D [Escherichia coli MS 185-1] gi|306814949|ref|ZP_07449105.1| ribonuclease D [Escherichia coli NC101] gi|312967002|ref|ZP_07781220.1| ribonuclease D [Escherichia coli 2362-75] gi|331657844|ref|ZP_08358806.1| ribonuclease D [Escherichia coli TA206] gi|115513088|gb|ABJ01163.1| Ribonuclease D [Escherichia coli APEC O1] gi|222033551|emb|CAP76292.1| ribonuclease D [Escherichia coli LF82] gi|226900511|gb|EEH86770.1| ribonuclease D [Escherichia sp. 3_2_53FAA] gi|227837342|gb|EEJ47808.1| ribonuclease D [Escherichia coli 83972] gi|300297490|gb|EFJ53875.1| ribonuclease D [Escherichia coli MS 185-1] gi|300406325|gb|EFJ89863.1| ribonuclease D [Escherichia coli MS 45-1] gi|305851597|gb|EFM52050.1| ribonuclease D [Escherichia coli NC101] gi|307553822|gb|ADN46597.1| ribonuclease D [Escherichia coli ABU 83972] gi|307626717|gb|ADN71021.1| ribonuclease D [Escherichia coli UM146] gi|312288466|gb|EFR16368.1| ribonuclease D [Escherichia coli 2362-75] gi|312946400|gb|ADR27227.1| ribonuclease D [Escherichia coli O83:H1 str. NRG 857C] gi|315286519|gb|EFU45954.1| ribonuclease D [Escherichia coli MS 110-3] gi|315290392|gb|EFU49767.1| ribonuclease D [Escherichia coli MS 153-1] gi|315299924|gb|EFU59162.1| ribonuclease D [Escherichia coli MS 16-3] gi|323952305|gb|EGB48178.1| ribonuclease D [Escherichia coli H252] gi|323956433|gb|EGB52175.1| ribonuclease D [Escherichia coli H263] gi|323978014|gb|EGB73100.1| ribonuclease D [Escherichia coli TW10509] gi|324007181|gb|EGB76400.1| ribonuclease D [Escherichia coli MS 57-2] gi|331056092|gb|EGI28101.1| ribonuclease D [Escherichia coli TA206] Length = 371 Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|300938850|ref|ZP_07153558.1| ribonuclease D [Escherichia coli MS 21-1] gi|300456240|gb|EFK19733.1| ribonuclease D [Escherichia coli MS 21-1] Length = 371 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|194434924|ref|ZP_03067168.1| ribonuclease D [Shigella dysenteriae 1012] gi|194416812|gb|EDX32937.1| ribonuclease D [Shigella dysenteriae 1012] Length = 375 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKSILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|37679238|ref|NP_933847.1| ribonuclease D [Vibrio vulnificus YJ016] gi|37197981|dbj|BAC93818.1| ribonuclease D [Vibrio vulnificus YJ016] Length = 390 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 4/184 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ C+ AR D + +DTE + +L ++QL GD I + Sbjct: 24 IITENQDLARVCSKAREADVVMLDTEFVRTRTYYPQLGLIQLFDGDSLSLIDP--TVLTD 81 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L D K+ H D+ V FG P+ T+I + + G Sbjct: 82 MSAFTELLNDASVMKVLHACGEDLEVFHNAFGAMPVPMVDTQIMAAFL-GHGLSTGFAAL 140 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L L EK+ G A Sbjct: 141 VEQYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMAAGWWQAAQQ 200 Query: 183 CCNF 186 Sbjct: 201 ESEL 204 >gi|301026544|ref|ZP_07189972.1| ribonuclease D [Escherichia coli MS 69-1] gi|300395475|gb|EFJ79013.1| ribonuclease D [Escherichia coli MS 69-1] Length = 371 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPISWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|293410113|ref|ZP_06653689.1| ribonuclease D [Escherichia coli B354] gi|291470581|gb|EFF13065.1| ribonuclease D [Escherichia coli B354] Length = 371 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLSAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|170019851|ref|YP_001724805.1| ribonuclease D [Escherichia coli ATCC 8739] gi|256022532|ref|ZP_05436397.1| ribonuclease D [Escherichia sp. 4_1_40B] gi|293415119|ref|ZP_06657762.1| ribonuclease D [Escherichia coli B185] gi|300951410|ref|ZP_07165251.1| ribonuclease D [Escherichia coli MS 116-1] gi|300956696|ref|ZP_07168970.1| ribonuclease D [Escherichia coli MS 175-1] gi|301645686|ref|ZP_07245613.1| ribonuclease D [Escherichia coli MS 146-1] gi|307138464|ref|ZP_07497820.1| ribonuclease D [Escherichia coli H736] gi|331642413|ref|ZP_08343548.1| ribonuclease D [Escherichia coli H736] gi|331653208|ref|ZP_08354213.1| ribonuclease D [Escherichia coli M718] gi|169754779|gb|ACA77478.1| ribonuclease D [Escherichia coli ATCC 8739] gi|260449075|gb|ACX39497.1| ribonuclease D [Escherichia coli DH1] gi|291432767|gb|EFF05746.1| ribonuclease D [Escherichia coli B185] gi|300316496|gb|EFJ66280.1| ribonuclease D [Escherichia coli MS 175-1] gi|300449336|gb|EFK12956.1| ribonuclease D [Escherichia coli MS 116-1] gi|301076058|gb|EFK90864.1| ribonuclease D [Escherichia coli MS 146-1] gi|323937062|gb|EGB33342.1| ribonuclease D [Escherichia coli E1520] gi|323940530|gb|EGB36721.1| ribonuclease D [Escherichia coli E482] gi|331039211|gb|EGI11431.1| ribonuclease D [Escherichia coli H736] gi|331049306|gb|EGI21378.1| ribonuclease D [Escherichia coli M718] gi|332343528|gb|AEE56862.1| ribonuclease D [Escherichia coli UMNK88] gi|333006772|gb|EGK26269.1| ribonuclease D [Shigella flexneri K-272] Length = 371 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|58584516|ref|YP_198089.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418832|gb|AAW70847.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 399 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 10/201 (4%) Query: 9 GDIPAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 DI E A+ IA DTE + RL ++Q+S G+ + + +A + + + Sbjct: 10 EDICEELIAKKPKFIAADTEFIRNHLTYYPRLSLIQISYGEKSFIVDALAP-EVDLSFIK 68 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 ++++ + K+FH R DI LF F P+F T++A+ Y + G +++ Sbjct: 69 KIMLNREITKVFHSCRQDIESLFTVFKCIPAPIFDTQVAAMFCHYYHDFIGYSKVVEQYQ 128 Query: 128 GINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 G+ + K ++SDW LS +QL YA SDVVHL+ L ++L+ GR Sbjct: 129 GVVLDKIKAKNSDWLRRPLSKDQLDYAISDVVHLYDLHQILCDRLEESGRMGWFHEEMES 188 Query: 187 LMDRAEL-----DLLGWENVD 202 ++D + D W+ + Sbjct: 189 VVDINKYLHSPKD--AWKRIK 207 >gi|110641921|ref|YP_669651.1| ribonuclease D [Escherichia coli 536] gi|300981914|ref|ZP_07175784.1| ribonuclease D [Escherichia coli MS 200-1] gi|110343513|gb|ABG69750.1| ribonuclease D [Escherichia coli 536] gi|300307392|gb|EFJ61912.1| ribonuclease D [Escherichia coli MS 200-1] gi|324011590|gb|EGB80809.1| ribonuclease D [Escherichia coli MS 60-1] Length = 371 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|110805403|ref|YP_688923.1| ribonuclease D [Shigella flexneri 5 str. 8401] gi|110614951|gb|ABF03618.1| RNase D, processes tRNA precursor [Shigella flexneri 5 str. 8401] gi|281600843|gb|ADA73827.1| RNase D [Shigella flexneri 2002017] gi|332759595|gb|EGJ89901.1| ribonuclease D [Shigella flexneri K-671] gi|333018392|gb|EGK37691.1| ribonuclease D [Shigella flexneri K-304] Length = 375 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRVFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|71083204|ref|YP_265923.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062] gi|71062317|gb|AAZ21320.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062] Length = 203 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 81/204 (39%), Positives = 125/204 (61%), Gaps = 4/204 (1%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I++H+ D+P + + IAVD E +GL +RD LC++Q+S G+ II++ + + Sbjct: 4 DIKLHKNDLPEDLDLG--NIIAVDGEFMGLNVKRDPLCLIQISTGNSDAHIIQLDREKYD 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 APNL +L D KIFHYGR D+A + + + TKIAS+L R+Y++ H LK Sbjct: 62 APNLNKVLSDASIIKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +KE + +++SK QSSD+ +LS QL+Y A+DV++LH + + + L R R DL S Sbjct: 122 IKEFMNVDVSKQFQSSDFGG-ELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKS 180 Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206 C FL R +LDL +++ DI+SH Sbjct: 181 CLAFLKTRVDLDLALFKD-DIWSH 203 >gi|331647298|ref|ZP_08348392.1| ribonuclease D [Escherichia coli M605] gi|330911610|gb|EGH40120.1| ribonuclease D [Escherichia coli AA86] gi|331044081|gb|EGI16217.1| ribonuclease D [Escherichia coli M605] Length = 371 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNIFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|188582284|ref|YP_001925729.1| ribonuclease D [Methylobacterium populi BJ001] gi|179345782|gb|ACB81194.1| ribonuclease D [Methylobacterium populi BJ001] Length = 384 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 3/185 (1%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D A AA+ + VDTE + +LC++Q++ DG ++ A + Sbjct: 11 SDACARLAAQT--FVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFE 68 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++ DE K+FH R D+ +++ G+ P F T++A+ + Y + + + ++ Sbjct: 69 LMADESTVKVFHSARQDLEIIWLLGGLLPHPFFDTQVAAMVC-GYGDSVSYEQLVNDVAK 127 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 I K+ + +DWS LS+ QL YA SDV HL + +L R L Sbjct: 128 ARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWLDEEMAVLT 187 Query: 189 DRAEL 193 Sbjct: 188 SPETY 192 >gi|309788586|ref|ZP_07683188.1| ribonuclease D [Shigella dysenteriae 1617] gi|308923613|gb|EFP69118.1| ribonuclease D [Shigella dysenteriae 1617] Length = 275 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|320173702|gb|EFW48889.1| Ribonuclease D [Shigella dysenteriae CDC 74-1112] Length = 371 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I S G ++ Sbjct: 61 PLKAILRDPAITKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|320181157|gb|EFW56076.1| Ribonuclease D [Shigella boydii ATCC 9905] gi|332089922|gb|EGI95022.1| ribonuclease D [Shigella boydii 5216-82] gi|332093315|gb|EGI98374.1| ribonuclease D [Shigella dysenteriae 155-74] Length = 371 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKSILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|333003670|gb|EGK23206.1| ribonuclease D [Shigella flexneri VA-6] Length = 371 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRADWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|87199358|ref|YP_496615.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444] gi|87135039|gb|ABD25781.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444] Length = 405 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 5/192 (2%) Query: 4 IRVHEG--DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I E D+ A D + VDTE + LC+VQ++ I +A G Sbjct: 7 ITTTEALADLCERLA--KADFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPLAPGLD 64 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +P L ++ +E K+FH G D+ +++ G P+F T+IA + + + Q G + Sbjct: 65 MSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGKTPHPIFDTQIA-MMAVSQSEQIGYSN 123 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ LG++I K + +DWS L++ Q++YA DV HL + + ++L + GR + Sbjct: 124 LVESWLGLSIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPKLLKRLIKTGRGEWLD 183 Query: 182 SCCNFLMDRAEL 193 L D Sbjct: 184 IEMEKLADPENY 195 >gi|298291118|ref|YP_003693057.1| ribonuclease D [Starkeya novella DSM 506] gi|296927629|gb|ADH88438.1| ribonuclease D [Starkeya novella DSM 506] Length = 385 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 5/204 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A I VDTE L +LC+VQL+ + + + +A G Sbjct: 1 MDMITTTDTLSAACERLARHPFITVDTEFLRETTFWPKLCVVQLASVEEAIVVDAVADGI 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 AP ++ DEK K+FH GR DI ++++ G+ PVF T++A+ + + + Sbjct: 61 DLAP-FFALMSDEKVLKVFHAGRQDIEIVWHLAGIIPHPVFDTQVAAMVL-GHGDSISYD 118 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ + G + K+ + +DWS LS Q+ YA +DV HL + L+ L++ GR+D Sbjct: 119 QLVQRITGEVLDKSLRFTDWSRRPLSAAQIAYAEADVTHLRDVFLKLDADLKKRGRADWV 178 Query: 181 TSCCNFLMDRAEL---DLLGWENV 201 L WE + Sbjct: 179 GEEMAVLTSPDTYRQEPERAWERL 202 >gi|30062942|ref|NP_837113.1| ribonuclease D [Shigella flexneri 2a str. 2457T] gi|56479892|ref|NP_707318.2| ribonuclease D [Shigella flexneri 2a str. 301] gi|30041191|gb|AAP16920.1| RNase D [Shigella flexneri 2a str. 2457T] gi|56383443|gb|AAN43025.2| RNase D [Shigella flexneri 2a str. 301] gi|313649164|gb|EFS13598.1| ribonuclease D [Shigella flexneri 2a str. 2457T] gi|332758877|gb|EGJ89192.1| ribonuclease D [Shigella flexneri 2747-71] gi|332762455|gb|EGJ92720.1| ribonuclease D [Shigella flexneri 4343-70] gi|332767130|gb|EGJ97325.1| ribonuclease D [Shigella flexneri 2930-71] gi|333004261|gb|EGK23792.1| ribonuclease D [Shigella flexneri K-218] Length = 371 Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRVFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|301327561|ref|ZP_07220781.1| ribonuclease D [Escherichia coli MS 78-1] gi|300845871|gb|EFK73631.1| ribonuclease D [Escherichia coli MS 78-1] Length = 371 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQREYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|292899665|ref|YP_003539034.1| ribonuclease D [Erwinia amylovora ATCC 49946] gi|291199513|emb|CBJ46630.1| ribonuclease D [Erwinia amylovora ATCC 49946] Length = 373 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 4/191 (2%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + C AR V A+A+DTE + RL ++QL G+ I + Sbjct: 4 TMITTNAALCEVCQRARQVPALALDTEFVRTRTYYPRLGLIQLYDGETICLIDPLP--IT 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + +L+D++ K H G D+ V + FGV +P+ T+I + + G Sbjct: 62 DWTPFRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFS-GRPLSCGFAT 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ GI + K++ +DW A LS++Q +YAA+DV +L + + + + G+ A Sbjct: 121 IVESFTGIVLDKSESRTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAAL 180 Query: 182 SCCNFLMDRAE 192 C L R Sbjct: 181 DECRLLCQRRT 191 >gi|254456084|ref|ZP_05069513.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211] gi|207083086|gb|EDZ60512.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211] Length = 203 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 81/205 (39%), Positives = 123/205 (60%), Gaps = 4/205 (1%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I++H+ D+P + + +AVD E +GL RRD LC++QLS G+ I+++ Sbjct: 3 NNIKLHQKDLPEDLDLG--NVLAVDGEFMGLNVRRDPLCLIQLSTGNSDAHIVQLDRKSY 60 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 APNL+ +L DE KIFHYGR D+A + Y + TKIAS+L R+Y++ H LK Sbjct: 61 EAPNLIKILKDETITKIFHYGRADMAHIKYYLKTETNNILDTKIASKLARSYSDNHSLKT 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +KE ++ISK QSSD+ L+ QL+Y A+DV++LH + + + L+R R L Sbjct: 121 LIKEFANVDISKQFQSSDFGG-TLTPAQLKYCANDVIYLHQIHDELFKILERENRIKLYK 179 Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206 C +FL R +LDL +++ DI+SH Sbjct: 180 DCLSFLKTRVDLDLALFKD-DIWSH 203 >gi|283785541|ref|YP_003365406.1| ribonuclease D [Citrobacter rodentium ICC168] gi|282948995|emb|CBG88598.1| ribonuclease D [Citrobacter rodentium ICC168] Length = 377 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 7/200 (3%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + C A R AIA+DTE + +L ++QL G+ I G + Sbjct: 7 TTDDALATLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGERVALIDP--HGISDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDTAITKYLHAGSEDLEVFLNAFGELPQPLIDTQILAAFC-GRPLSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYTGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPIAGKLMAETEAAGWLPAALDEC 183 Query: 185 NFLMDRAELDLL---GWENV 201 + R + L W ++ Sbjct: 184 RLMQQRRQEILAPEEAWRDI 203 >gi|320157018|ref|YP_004189397.1| ribonuclease D [Vibrio vulnificus MO6-24/O] gi|319932330|gb|ADV87194.1| ribonuclease D [Vibrio vulnificus MO6-24/O] Length = 390 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 4/184 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ C+ AR D + +DTE + +L ++QL GD I + Sbjct: 24 IITENQDLVRVCSKAREADVVMLDTEFVRTRTYYPQLGLIQLFDGDTLSLIDP--TVLTD 81 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L D K+ H D+ V FG P+ T+I + + G Sbjct: 82 MSAFTELLNDASVMKVLHACGEDLEVFHNAFGAIPVPMVDTQIMAAFL-GHGLSTGFAAL 140 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L L EK+ G A Sbjct: 141 VEQYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMEAGWWQAAQQ 200 Query: 183 CCNF 186 Sbjct: 201 ESEL 204 >gi|312113633|ref|YP_004011229.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100] gi|311218762|gb|ADP70130.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100] Length = 404 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 7/207 (3%) Query: 1 MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 + + D+ C A + VDTE + R +LC++Q++ + + Sbjct: 25 LPPVITSITDLKTLCDALAGQPYVTVDTEFMRQTTYRPKLCLIQMAAPGIEAVVDPLP-- 82 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + ++ + K+FH R DI +++ GV P+F T+IA+ + + + Sbjct: 83 NLDLSPFYALMANTAVVKVFHAARQDIEIVWQEAGVIPMPLFDTQIAA-MALGHGDAISY 141 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 +K+LL N K Q+ DW L +QL+YA DV +L + + ++L++ GR Sbjct: 142 GALVKKLLKKNHDKTYQAIDWCQRPLGPKQLEYALGDVTYLRDVYAKLKQRLEQTGREPW 201 Query: 180 ATSCCNFLMDRAELDL---LGWENVDI 203 L D W+ + + Sbjct: 202 LEEEVAVLTDPKTYAFDPADAWKRLKL 228 >gi|159044436|ref|YP_001533230.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12] gi|157912196|gb|ABV93629.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12] Length = 385 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 11/215 (5%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPG----DGTVDIIR 55 M T+ + CA A D + VDTE L +LC+VQL+ + V + Sbjct: 1 MDTL-TDTAALADFCARAAEHDYVTVDTEFLRERTYYAKLCLVQLAYPGEGEETAVLVDP 59 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 +A G AP L + + K+FH R D+ + F GV P+F T++A+ + + Sbjct: 60 LAEGMSLAPML-DLFRNPDVVKVFHAARQDLEIFFVEHGVFPEPLFDTQVAAMVC-GFGE 117 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + ++++ ++ K + +DWS LS Q +YA +DV HL + + + G Sbjct: 118 QVGYETLVRKIARESLDKTSRFTDWSHRPLSKAQKKYALADVTHLRVIYEYLAAAIDKTG 177 Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 R L+D + W V ++S Sbjct: 178 RRAWVEEELQGLLDPEIYVVDPDEAWRRVKTRTNS 212 >gi|310815760|ref|YP_003963724.1| ribonuclease D [Ketogulonicigenium vulgare Y25] gi|308754495|gb|ADO42424.1| ribonuclease D [Ketogulonicigenium vulgare Y25] Length = 388 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 8/213 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIA 57 M TI E + + CA A + VDTE L +LC+VQL S D ++ Sbjct: 1 MKTITTTEA-LASFCAEAAKHPYVTVDTEFLRERTYYAKLCLVQLAFSGPDADAALVDPL 59 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 A + L + ++ K+FH R D+ + V P+F T++A+ + Y Q Sbjct: 60 ADGIDLKPLYDLFLNPAVVKVFHAARQDLEIFSVGQNVIPAPLFDTQVAAMVC-GYGEQV 118 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + +++ +I K + +DWS LS+ Q +YA +DV HL + + ++ + GR+ Sbjct: 119 SYETLARKIAKADIDKTSRFTDWSRRPLSEAQKEYALADVTHLRQIYENLSAQIAKSGRA 178 Query: 178 DLATSCCNFLMDRAELDL---LGWENVDIFSHS 207 L D + W V + S Sbjct: 179 AWVAEEMGVLNDPDTYRVDPEQAWLRVKTRTSS 211 >gi|323968571|gb|EGB63977.1| ribonuclease D [Escherichia coli M863] gi|327252925|gb|EGE64579.1| ribonuclease D [Escherichia coli STEC_7v] Length = 371 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--VITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|190570587|ref|YP_001974945.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356859|emb|CAQ54230.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 394 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 10/197 (5%) Query: 13 AECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 E A+ IAVDTE + RL ++Q+S G+ + I+ + + + +++ Sbjct: 14 EELMAKDPKFIAVDTEFIRNNLTYYPRLSLIQISYGEKSF-IVDVLVPGIDLSLIKKIML 72 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + + K+FH R DI L P+F T++A+ Y + G +++ G+ + Sbjct: 73 NREITKVFHSCRQDIESLLTVLKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGVAL 132 Query: 132 SK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K ++SDW LS++QL YA +DV+HL+ L KL+ R ++D Sbjct: 133 DKIKAKNSDWLKRPLSEDQLDYAVNDVIHLYDLHQILCNKLEENNRMGWFQEEMESIVDV 192 Query: 191 AEL-----DLLGWENVD 202 + D W+ + Sbjct: 193 NKYLHNPKD--AWKRIK 207 >gi|198244835|ref|YP_002215323.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939351|gb|ACH76684.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 375 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 8 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 66 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184 Query: 186 FLMDRAE 192 + R + Sbjct: 185 LMQQRRQ 191 >gi|205357371|ref|ZP_02347252.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322073|gb|EDZ09912.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 375 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 8 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 66 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184 Query: 186 FLMDRAE 192 + R + Sbjct: 185 LMQQRRQ 191 >gi|53803525|ref|YP_114794.1| ribonuclease D [Methylococcus capsulatus str. Bath] gi|53757286|gb|AAU91577.1| ribonuclease D [Methylococcus capsulatus str. Bath] Length = 388 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 8/186 (4%) Query: 10 DIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D PAE AA IAVDTE + + C++Q++ G I +A ++ Sbjct: 13 DSPAELAAFCRSIGGSPWIAVDTEFMRDKTYYPKFCLLQIANGTQAACIDPLA--IEDLR 70 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + +L + K+FH R D+ + F+ F P+F T++A+ L + Q G + Sbjct: 71 EVECLLFNRAITKVFHAARQDLEIFFHRFRAVPAPIFDTQLAAPLV-GHPEQVGYASLVS 129 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 +LG+ + K +DWS LS Q +YAA+DV+HL AL + E+L+RLGR Sbjct: 130 AMLGVTVDKEHTRTDWSQRPLSAAQKEYAANDVIHLAALYPRMREQLERLGRYAWLVDEF 189 Query: 185 NFLMDR 190 L + Sbjct: 190 AALEEP 195 >gi|205352517|ref|YP_002226318.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205359829|ref|ZP_02832566.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|207856676|ref|YP_002243327.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272298|emb|CAR37177.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205342684|gb|EDZ29448.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708479|emb|CAR32800.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627575|gb|EGE33918.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 375 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 8 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 66 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184 Query: 186 FLMDRAE 192 + R + Sbjct: 185 LMQQRRQ 191 >gi|323137715|ref|ZP_08072791.1| ribonuclease D [Methylocystis sp. ATCC 49242] gi|322397012|gb|EFX99537.1| ribonuclease D [Methylocystis sp. ATCC 49242] Length = 393 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 6/197 (3%) Query: 9 GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 ++ A C + VDTE L ++C++Q++ + V I ++ G P Sbjct: 8 DELAAVCDRFSRHPFVTVDTEFLRETTFWPKVCVIQIASPEEAVAIDALSEGIDLTP-FF 66 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 ++ + K+FH R D+ +++ + P+F T++A+ + + Q + +K + Sbjct: 67 SLMANADVVKVFHAARQDLEIIWRLARLIPAPLFDTQVAAMVC-GFGEQASYLELVKAIT 125 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 N+ K+ + +DWS LS Q+ YA +DV HL + ++L+R R + L Sbjct: 126 RANLDKSSRFTDWSRRPLSAAQIDYAIADVTHLRDIYTTLRQRLERSNRLEWLADEMQTL 185 Query: 188 MDRAELDL---LGWENV 201 A + WE + Sbjct: 186 TSPATYEQHPENAWERL 202 >gi|94497624|ref|ZP_01304192.1| ribonuclease D [Sphingomonas sp. SKA58] gi|94422841|gb|EAT07874.1| ribonuclease D [Sphingomonas sp. SKA58] Length = 412 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 5/199 (2%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + CA +AVDTE + LC+VQ++ I A G P L + Sbjct: 37 LSDFCARIANSPYVAVDTEFMRENSYWPDLCLVQVADSHEAAAIDPKAPGIDLTPLLNLL 96 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + +E K+FH G DI ++ G P+F T+IA+ + + Q G + + LG+ Sbjct: 97 VDNEDVLKVFHAGGQDIEIVHNLTGKAPHPMFDTQIAA-MALGFGEQIGYGNLVDAWLGV 155 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K + +DW+ L Q+ YA DV +L + + E+L++ GR D + + Sbjct: 156 QLDKGARFTDWARRPLDKRQIDYAIGDVTYLIKIFPKMLEELKKTGRGDWLDQEMERISN 215 Query: 190 RAELD---LLGWENVDIFS 205 + + W+ V I S Sbjct: 216 PSNYENDPADAWKRVRIAS 234 >gi|333018685|gb|EGK37978.1| ribonuclease D [Shigella flexneri K-227] Length = 371 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA+DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YA +DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAVADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|326623067|gb|EGE29412.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 371 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 4 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 62 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 120 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180 Query: 186 FLMDRAE 192 + R + Sbjct: 181 LMQQRRQ 187 >gi|194445618|ref|YP_002041074.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|200390008|ref|ZP_03216619.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194404281|gb|ACF64503.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|199602453|gb|EDZ00999.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 375 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 8 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 66 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184 Query: 186 FLMDRAE 192 + R + Sbjct: 185 LMQQRRQ 191 >gi|254508462|ref|ZP_05120581.1| ribonuclease D [Vibrio parahaemolyticus 16] gi|219548574|gb|EED25580.1| ribonuclease D [Vibrio parahaemolyticus 16] Length = 386 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 12/190 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR VD + +DTE + +L ++QL G+ I V +L D Sbjct: 34 AREVDVVMLDTEFVRTRTFYPQLGLIQLFDGEQLSLIDP--TELDEMTPFVELLQDTSVL 91 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V +FG P+ T++ + + G ++ L + + K++ Sbjct: 92 KVLHACGEDLEVFQNSFGCLPYPMVDTQVMAAFL-GHGLSTGFASLVEHYLQVELDKSES 150 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL--------- 187 +DW A L+D+QL YAA+DV +L L + + G + A + L Sbjct: 151 RTDWLARPLTDKQLDYAAADVFYLLPLYEKLLNAVTEAGWWEAAQQESDLLAAKRIKNTD 210 Query: 188 MDRAELDLLG 197 + A LD+ G Sbjct: 211 PEMAYLDVKG 220 >gi|62180380|ref|YP_216797.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194734944|ref|YP_002114851.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248423|ref|YP_002146207.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197301010|ref|ZP_02662940.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205360221|ref|ZP_02681919.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|62128013|gb|AAX65716.1| RNase D, processes tRNA precursor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194710446|gb|ACF89667.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197212126|gb|ACH49523.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289302|gb|EDY28669.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205350690|gb|EDZ37321.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322714855|gb|EFZ06426.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 375 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 8 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 66 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184 Query: 186 FLMDRAE 192 + R + Sbjct: 185 LMQQRRQ 191 >gi|260768989|ref|ZP_05877923.1| ribonuclease D [Vibrio furnissii CIP 102972] gi|260617019|gb|EEX42204.1| ribonuclease D [Vibrio furnissii CIP 102972] Length = 397 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 4/179 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 D+ C AR D + +DTE + +L ++QL G+ I +A V Sbjct: 36 NDLERVCSLARDADVVMLDTEFVRTRTFYPQLGLIQLFDGENLSLIDPLA--MDEMTPFV 93 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H DI V +FG P+ T+I + Y G +LL Sbjct: 94 ELLQDTSVLKVLHACGEDIEVFKTSFGCVPFPMVDTQIMAAFL-GYGLSTGFAALAHDLL 152 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 + + K++ +DW A LS +QL+YAA+DV +L + Q EK+ + G + A Sbjct: 153 NVELDKSESRTDWLARPLSQKQLEYAAADVFYLMPMYEQLLEKVTQAGWWEAAQQESEL 211 >gi|320085676|emb|CBY95454.1| RNase D, processes tRNA precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 371 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 4 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 62 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 120 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180 Query: 186 FLMDRAE 192 + R + Sbjct: 181 LMQQRRQ 187 >gi|16765158|ref|NP_460773.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194448143|ref|YP_002045863.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197262566|ref|ZP_03162640.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205358997|ref|ZP_02666341.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|16420349|gb|AAL20732.1| RNase D [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194406447|gb|ACF66666.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197240821|gb|EDY23441.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205339484|gb|EDZ26248.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261247002|emb|CBG24819.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993774|gb|ACY88659.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158341|emb|CBW17840.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332988704|gb|AEF07687.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 375 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 8 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 66 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184 Query: 186 FLMDRAE 192 + R + Sbjct: 185 LMQQRRQ 191 >gi|16760707|ref|NP_456324.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141535|ref|NP_804877.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25289178|pir||AB0725 ribonuclease D [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503004|emb|CAD05500.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi] gi|29137162|gb|AAO68726.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 375 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 8 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 66 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184 Query: 186 FLMDRAE 192 + R + Sbjct: 185 LMQQRRQ 191 >gi|195873245|ref|ZP_02696622.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634367|gb|EDX52719.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 375 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 8 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 66 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184 Query: 186 FLMDRAE 192 + R + Sbjct: 185 LMQQRRQ 191 >gi|205357935|ref|ZP_02574364.2| ribonuclease D [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328669|gb|EDZ15433.1| ribonuclease D [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|323130091|gb|ADX17521.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 390 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 23 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 80 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 81 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 139 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 140 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 199 Query: 186 FLMDRAE 192 + R + Sbjct: 200 LMQQRRQ 206 >gi|254294269|ref|YP_003060292.1| ribonuclease D [Hirschia baltica ATCC 49814] gi|254042800|gb|ACT59595.1| ribonuclease D [Hirschia baltica ATCC 49814] Length = 390 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 5/191 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + + IAVDTE +LC++Q + + I ++ AP L ++ D R Sbjct: 25 LKKGEFIAVDTEFHRESTFWPKLCLIQAATLEFDCLIDPLSPNIDLAPFL-DLMADTSRV 83 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH R D+ + G P+F +++A+ + + ++ + +LL + K+ Q Sbjct: 84 KVFHAARQDMEIFTKLIGTPPAPIFDSQVAA-MACGLGDSVSYENLVSQLLKARVDKSSQ 142 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL- 195 +DW L+++QL YA DV HL ++ KL++LGR L++ D Sbjct: 143 FTDWQRRPLTEKQLDYARGDVTHLRHCYVKLKAKLEKLGRMGWIEEETEILVNPDTYDTN 202 Query: 196 --LGWENVDIF 204 W+ + I Sbjct: 203 PKNAWKRMKIR 213 >gi|56413264|ref|YP_150339.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362190|ref|YP_002141827.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127521|gb|AAV77027.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093667|emb|CAR59137.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 371 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 4 TDDALASLCEAVRTCPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 62 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180 Query: 186 FLMDRAE 192 + R + Sbjct: 181 LMQQRRQ 187 >gi|161613674|ref|YP_001587639.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363038|gb|ABX66806.1| hypothetical protein SPAB_01399 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|322616813|gb|EFY13721.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618052|gb|EFY14944.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625723|gb|EFY22542.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626173|gb|EFY22983.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633779|gb|EFY30519.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638933|gb|EFY35626.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640751|gb|EFY37401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644138|gb|EFY40683.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649210|gb|EFY45648.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655369|gb|EFY51677.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660875|gb|EFY57106.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662828|gb|EFY59035.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668012|gb|EFY64171.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674226|gb|EFY70320.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675419|gb|EFY71493.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683166|gb|EFY79182.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686859|gb|EFY82837.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195248|gb|EFZ80428.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200159|gb|EFZ85245.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203843|gb|EFZ88861.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207397|gb|EFZ92345.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213750|gb|EFZ98532.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217380|gb|EGA02099.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220925|gb|EGA05358.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224700|gb|EGA08971.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231403|gb|EGA15516.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235843|gb|EGA19922.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240412|gb|EGA24455.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245305|gb|EGA29305.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246673|gb|EGA30645.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253527|gb|EGA37355.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323263330|gb|EGA46866.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266778|gb|EGA50264.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268984|gb|EGA52440.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 371 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 4 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 62 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180 Query: 186 FLMDRAE 192 + R + Sbjct: 181 LMQQRRQ 187 >gi|194468559|ref|ZP_03074543.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358811|ref|ZP_02659348.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194454923|gb|EDX43762.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331760|gb|EDZ18524.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 375 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 8 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D + K H G D+ V FG P+ T+I + G ++E Sbjct: 66 LKAVLRDTEITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184 Query: 186 FLMDRAE 192 + R + Sbjct: 185 LMQQRRQ 191 >gi|224583693|ref|YP_002637491.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912118|ref|ZP_04655955.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|224468220|gb|ACN46050.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 371 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 4 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 62 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 120 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180 Query: 186 FLMDRAE 192 + R + Sbjct: 181 LMQQRRQ 187 >gi|218515424|ref|ZP_03512264.1| ribonuclease III protein [Rhizobium etli 8C-3] Length = 177 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 3/176 (1%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C D I +DTE L LC++Q++ V + +A G AP Sbjct: 4 TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP- 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ D K K+FH R DI ++F + P+F T++A+ + + + + Sbjct: 63 FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + ++I K+ + +DWS LSD+QL+YA +DV HL + L +L R GR+ T Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLT 177 >gi|213648384|ref|ZP_03378437.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 371 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 4 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 62 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180 Query: 186 FLMDRAE 192 + R + Sbjct: 181 LMQQRRQ 187 >gi|326388937|ref|ZP_08210519.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370] gi|326206537|gb|EGD57372.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370] Length = 445 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 3/190 (1%) Query: 6 VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + D A+ AR A + VDTE + LC+VQ++ I +A G + Sbjct: 7 ITTTDALADICARLAKAEFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPMAPGIDLS 66 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L ++ +E K+FH G D+ +++ G P+F T+IA + + + Q G + + Sbjct: 67 PLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGRTPHPIFDTQIA-MMAVSQSEQIGYSNLV 125 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + LG +I K + +DWS L++ Q++YA DV HL + + ++L + GR + Sbjct: 126 ESWLGFSIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPRILKRLIKTGRGEWLDIE 185 Query: 184 CNFLMDRAEL 193 L D Sbjct: 186 MEKLADPENY 195 >gi|261209844|ref|ZP_05924146.1| ribonuclease D [Vibrio sp. RC341] gi|260841142|gb|EEX67662.1| ribonuclease D [Vibrio sp. RC341] Length = 398 Score = 224 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 30 IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVMDE 87 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 88 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 146 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G + A Sbjct: 147 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWEAALQ 206 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 207 ESELQVAKRTKVSNPELAYLDIKGAWQ 233 >gi|146279098|ref|YP_001169257.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025] gi|145557339|gb|ABP71952.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025] Length = 385 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 9/214 (4%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRI 56 M TI E AA+ + +DTE L +LC++Q++ G+ V + + Sbjct: 1 MKTITTTEALAAFCEAAKAAPYVTIDTEFLRERTYWSKLCLIQMALPGKTGE-AVLVDPV 59 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A + L + E K+FH R D+ + F V P+F T++A+ + + Q Sbjct: 60 EAPDMSLEPLYDLFRHEPTVKVFHAARQDLEIFFVEGRVFPTPLFDTQVAAMVC-GFGEQ 118 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +K++ + K + +DWS LSD Q YA +DV HL + + ++++ GR Sbjct: 119 VGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGR 178 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 L D + W + + S Sbjct: 179 QRWVEEELAILTDPETYTVRPEEAWLRIKTRTTS 212 >gi|312912807|dbj|BAJ36781.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224451|gb|EFX49514.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 371 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 4 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 62 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180 Query: 186 FLMDRAE 192 + R + Sbjct: 181 LMQQRRQ 187 >gi|27363618|ref|NP_759146.1| ribonuclease D [Vibrio vulnificus CMCP6] gi|27359734|gb|AAO08673.1| ribonuclease D [Vibrio vulnificus CMCP6] Length = 390 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 4/184 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ C+ AR D + +DTE + +L ++QL GD I + Sbjct: 24 IITENQDLVRVCSKAREADVVMLDTEFVRTRTYYPQLGLIQLFDGDTLSLIDP--TVLTD 81 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L D K+ H D+ V G P+ T+I + + G Sbjct: 82 MSAFTELLNDASVMKVLHACGEDLEVFHNALGAIPVPMVDTQIMAAFL-GHGLSTGFAAL 140 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L L EK+ G A Sbjct: 141 VEQYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMEAGWWQAAQQ 200 Query: 183 CCNF 186 Sbjct: 201 ESEL 204 >gi|262404337|ref|ZP_06080892.1| ribonuclease D [Vibrio sp. RC586] gi|262349369|gb|EEY98507.1| ribonuclease D [Vibrio sp. RC586] Length = 381 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 13 IITQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVMDE 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 71 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ G + A Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQ 189 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 190 ESELQVAKRIKVSNPEHAYLDIKGAWQ 216 >gi|213052594|ref|ZP_03345472.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419335|ref|ZP_03352401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426609|ref|ZP_03359359.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213609541|ref|ZP_03369367.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|289828970|ref|ZP_06546670.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 371 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 4 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 62 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180 Query: 186 FLMDRAE 192 + R + Sbjct: 181 LMQQRRQ 187 >gi|218531091|ref|YP_002421907.1| ribonuclease D [Methylobacterium chloromethanicum CM4] gi|218523394|gb|ACK83979.1| ribonuclease D [Methylobacterium chloromethanicum CM4] Length = 384 Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 1/193 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A + VDTE + +LC++Q++ DG ++ A Sbjct: 1 MELISATQALSDACTQFAAQPFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKD 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + ++ DE K+FH R D+ +++ G+ +P F T++A+ + Y + + Sbjct: 61 LDLKPFFDLMADESTVKVFHSARQDLEIIWLLGGLLPQPFFDTQVAAMVC-GYGDSVSYE 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++ I K+ + +DWS LS+ QL YA SDV HL + +L R Sbjct: 120 QLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWL 179 Query: 181 TSCCNFLMDRAEL 193 L Sbjct: 180 DEEMAVLTSPETY 192 >gi|294013278|ref|YP_003546738.1| ribonuclease D [Sphingobium japonicum UT26S] gi|292676608|dbj|BAI98126.1| ribonuclease D [Sphingobium japonicum UT26S] Length = 401 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 6/198 (3%) Query: 13 AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A+ AR IAVDTE + LC+VQ++ I A G +P L M+ Sbjct: 27 AQFCARIAKSPYIAVDTEFMRENSYWPDLCLVQVADEHEAAAIDPKAPGLDLSPLLDLMV 86 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 +E K+FH G D+ +++ G P+F T+IA+ + Q G + + LG+ Sbjct: 87 DNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFDTQIAA-MALGLGEQIGYGNLVDAWLGVQ 145 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + K + +DW+ L Q+ YA DV +L + + E+L+R GR D + D Sbjct: 146 LDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTGRGDWLDQEMERISDP 205 Query: 191 AELDLL---GWENVDIFS 205 + + W+ V I S Sbjct: 206 SNYENKPEEAWQRVRIAS 223 >gi|292488477|ref|YP_003531361.1| ribonuclease D [Erwinia amylovora CFBP1430] gi|291553908|emb|CBA20953.1| Ribonuclease D [Erwinia amylovora CFBP1430] Length = 369 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 3/176 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR V A+A+DTE + RL ++QL G+ I + + +L+D++ Sbjct: 15 ARQVPALALDTEFVRTRTYYPRLGLIQLYDGETICLIDPLP--ITDWTPFRDLLLDQQVI 72 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + FGV +P+ T+I + + G ++ GI + K++ Sbjct: 73 KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFS-GRPLSCGFATIVESFTGIVLDKSES 131 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A LS++Q +YAA+DV +L + + + + G+ A C L R Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAALDECRLLCQRRT 187 >gi|312172621|emb|CBX80877.1| Ribonuclease D [Erwinia amylovora ATCC BAA-2158] Length = 369 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 3/176 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR V A+A+DTE + RL ++QL G+ I + + +L+D++ Sbjct: 15 ARQVPALALDTEFVRTRTYYPRLGLIQLYDGETICLIDPLP--ITDWTPFRDLLLDQQVI 72 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + FGV +P+ T+I + + G ++ GI + K++ Sbjct: 73 KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFS-GRPLSCGFATIVESFTGIVLDKSES 131 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A LS++Q +YAA+DV +L + + + + G+ A C L R Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAALDECRLLCQRRT 187 >gi|297182779|gb|ADI18933.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0010_09O16] Length = 203 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 128/207 (61%), Gaps = 5/207 (2%) Query: 1 MTT-IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M T I +H+GD+P + +AVD E LGL RRDRLC++Q+S G+ I+++ Sbjct: 1 MNTKIELHKGDLPENLDLGTI--VAVDGEFLGLNVRRDRLCLIQVSSGNSDAHIVQLDRE 58 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 NAPNLV +L D+ +K+FHY R D+ + Y V + C+KI S+L RT+++ H L Sbjct: 59 NYNAPNLVKILADKNIKKLFHYARSDLTHIKYYLKTDVNNIECSKIKSKLARTFSDSHSL 118 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 K +KE +++SK Q+SD+ +LS QL+Y A+DV++LH + + + L+R R DL Sbjct: 119 KTLIKEFANVDVSKQFQTSDFGG-ELSQGQLKYCANDVIYLHKIHSELDKILEREKRMDL 177 Query: 180 ATSCCNFLMDRAELDLLGWENVDIFSH 206 C FL R +LDLL +++ DI+SH Sbjct: 178 YRECIKFLHTRIKLDLLEFKD-DIWSH 203 >gi|229521896|ref|ZP_04411313.1| ribonuclease D [Vibrio cholerae TM 11079-80] gi|229340821|gb|EEO05826.1| ribonuclease D [Vibrio cholerae TM 11079-80] Length = 381 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 13 IISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 71 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216 >gi|307295006|ref|ZP_07574848.1| ribonuclease D [Sphingobium chlorophenolicum L-1] gi|306879480|gb|EFN10698.1| ribonuclease D [Sphingobium chlorophenolicum L-1] Length = 388 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 5/199 (2%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + + CA IA+DTE + LC+VQ++ I A G +P L M Sbjct: 13 LASFCARIAKSPYIAIDTEFMRENSYWPDLCLVQVADEHEAAAIDPKAPGLDLSPLLDLM 72 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + +E K+FH G D+ +++ G P+F T+IA+ + Q G + + LG+ Sbjct: 73 VDNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFDTQIAA-MALGLGEQIGYGNLVDAWLGV 131 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K + +DW+ L Q+ YA DV +L + + E+L+R GR D + D Sbjct: 132 QLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTGRGDWLDQEMERISD 191 Query: 190 RAELDLL---GWENVDIFS 205 + + W+ V I S Sbjct: 192 PSNYENKPDEAWQRVRIAS 210 >gi|240139668|ref|YP_002964145.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1] gi|240009642|gb|ACS40868.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1] Length = 384 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 1/193 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A + VDTE + +LC++Q++ DG ++ A Sbjct: 1 MELISATQALSDACTQFAAQPFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKD 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + ++ DE K+FH R D+ +++ G+ +P F T++A+ + Y + + Sbjct: 61 LDLKPFFDLMADESTVKVFHSARQDLEIIWLLGGLLPQPFFDTQVAAMVC-GYGDSVSYE 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++ I K+ + +DWS LS+ QL YA SDV HL + +L R Sbjct: 120 QLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWL 179 Query: 181 TSCCNFLMDRAEL 193 L Sbjct: 180 DEEMAVLTSPETY 192 >gi|33241189|ref|NP_876131.1| putative ribonuclease D [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238719|gb|AAQ00784.1| Ribonuclease D [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 214 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 79/208 (37%), Positives = 120/208 (57%), Gaps = 5/208 (2%) Query: 2 TTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 + +V E D+ + + +A+DTE +GL+ RDRLC+VQ+ V I+I Sbjct: 9 ASFKVFETDLDDQWTQHFSTQSCLAIDTEAMGLIHGRDRLCLVQICDEQDNVACIKIQQH 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q A NL ++ D EK+FHY RFD+A + + V +FCTK+AS++ RTY+ +HGL Sbjct: 69 QTKANNLQSLMEDSAIEKVFHYARFDVAAISCNLNIAVNSIFCTKLASKIGRTYSPRHGL 128 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K+ + EL+GI + K QSSDW +L+++QL+YA +DV +L R Q + L R R + Sbjct: 129 KEVILELVGIELDKQAQSSDWGRVGELTEKQLEYATNDVRYLIQARNQLEKMLIREDRWE 188 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 L C + +ELD+ + N IF H Sbjct: 189 LTKRCFECISVMSELDIRRFHN--IFEH 214 >gi|254286913|ref|ZP_04961865.1| ribonuclease D [Vibrio cholerae AM-19226] gi|150423063|gb|EDN15012.1| ribonuclease D [Vibrio cholerae AM-19226] Length = 381 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 13 IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 71 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G + A Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWEAALQ 189 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 190 ESELQVVKRTKVSNPELAYLDIKGAWQ 216 >gi|183220183|ref|YP_001838179.1| ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910303|ref|YP_001961858.1| ribonuclease D-like [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774979|gb|ABZ93280.1| Ribonuclease D-related [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778605|gb|ABZ96903.1| Ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 212 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 89/209 (42%), Positives = 129/209 (61%), Gaps = 6/209 (2%) Query: 2 TTIR--VHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 +TI+ V +GD+ + A + D +AVD E +GL PRRDRLC+VQ+S V +++I Sbjct: 6 STIKPAVLQGDLNEDFFEAFKKDDRLAVDCEMMGLNPRRDRLCVVQISDSKNKVALVQIL 65 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 GQK AP++ + ++ KIFH+ R D+ L G++V+ VFCTKIAS+L RTYT++H Sbjct: 66 PGQKEAPHIQKLFESKEITKIFHFARMDMTFLRARLGIKVQNVFCTKIASKLARTYTDKH 125 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 GLK+ ++E NI K QSSDW L+ +Q+ YA++DV L +L TE + R R Sbjct: 126 GLKELIREFFEENIDKKNQSSDWGKKILTKDQVDYASTDVRFLISLESILTEMMIRENRF 185 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 +A C FL + ELDLL E ++F H Sbjct: 186 TIAEKCFGFLETQVELDLL--EVYNLFEH 212 >gi|163852332|ref|YP_001640375.1| ribonuclease D [Methylobacterium extorquens PA1] gi|163663937|gb|ABY31304.1| ribonuclease D [Methylobacterium extorquens PA1] Length = 384 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 1/193 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A + VDTE + +LC++Q++ DG ++ A Sbjct: 1 MELISATQALSDACTQFAAQPFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKD 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + ++ DE K+FH R D+ +++ G+ +P F T++A+ + Y + + Sbjct: 61 LDLKPFFDLMADESTVKVFHSARQDLEIIWLLGGLLPQPFFDTQVAAMVC-GYGDSVSYE 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++ I K+ + +DWS LS+ QL YA SDV HL + +L R Sbjct: 120 QLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWL 179 Query: 181 TSCCNFLMDRAEL 193 L Sbjct: 180 DEEMAVLTSPETY 192 >gi|46204778|ref|ZP_00049503.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1] Length = 214 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 1/193 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A + VDTE + +LC++Q++ DG ++ A Sbjct: 1 MELISETQALSDACARLAAQSFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKG 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + + ++ DE K+FH R D+ +++ G+ P F T++A+ + Y + + Sbjct: 61 LDLKPFLDLMADESTVKVFHSARQDLEIIWLLGGLLPHPFFDTQVAAMVC-GYGDSVSYE 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++ I K+ + +DWS LSD QL YA SDV HL + +L R R Sbjct: 120 QLVNDVAKARIDKSSRFTDWSRRPLSDAQLAYALSDVTHLVTIYQVLAAELVRTDRGLWL 179 Query: 181 TSCCNFLMDRAEL 193 L + Sbjct: 180 DEEMAVLTSPETI 192 >gi|54308269|ref|YP_129289.1| ribonuclease D [Photobacterium profundum SS9] gi|46912697|emb|CAG19487.1| hypothetical ribonuclease D [Photobacterium profundum SS9] Length = 374 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + C AR + +DTE + +L ++Q+ GD V I I + Sbjct: 5 IITTTQRLDTICDHARTHSVVMLDTEFVRTRTLYPKLGLIQMFDGDNLVLIDPIE--IDD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L D+ K+ H D+ V + G P+ T++ + + G Sbjct: 63 LTPFWDLLRDQSIIKVLHACGEDLEVFQHHAGCLPTPMIDTQLMAAFL-GHGVSAGFGSL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + E +G+++ K + ++W A L+D+QL YAA+DV +L L EK++ G + Sbjct: 122 VSEYVGVDLEKGEARTNWLARPLTDKQLDYAAADVFYLLPLYETLLEKVKAKGWMEALEL 181 Query: 183 CCNFLMDRAE 192 C LM + Sbjct: 182 ECAALMQKRT 191 >gi|58697529|ref|ZP_00372780.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans] gi|58535998|gb|EAL59702.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans] Length = 284 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 10/201 (4%) Query: 9 GDIPAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 DI A+ IAVDTE + +L ++Q+S G+ + I+ + + + Sbjct: 10 EDICEGLIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIK 68 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +++++ K+FH R DI L F P+F T++A+ Y + G +++ Sbjct: 69 KIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQ 128 Query: 128 GINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 GI + K ++SDW LS++QL YA +DVVHL+ L KL+ R Sbjct: 129 GIALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMES 188 Query: 187 LMDRAEL-----DLLGWENVD 202 ++D + D W+ + Sbjct: 189 IVDINKYLHSPKD--AWKRIK 207 >gi|254502050|ref|ZP_05114201.1| ribonuclease D [Labrenzia alexandrii DFL-11] gi|222438121|gb|EEE44800.1| ribonuclease D [Labrenzia alexandrii DFL-11] Length = 392 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 9/209 (4%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M I + D+ A C D + VDTE L +LC++Q++ + + +A G Sbjct: 1 MEVITKTK-DLAAACQRLATNDYVTVDTEFLRETTFWPKLCVIQMAGTEMAFIVDALAEG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 P ++ D+ K+FH R DI ++++ G+ P+F T++A+ + + + Sbjct: 60 LDLEP-FFDLMRDDSVTKVFHAARQDIEIIYHLGGLIPAPLFDTQVAAMVC-GFGDSISY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + ++ G I K+ + +DW+ L+ +QL YA +DV HL L R+ Sbjct: 118 DQLVYKVTGARIDKSSRFTDWARRPLTAKQLDYALADVTHLRDAFQFLKANLAEQNRTHW 177 Query: 180 ATSCCNFLMD----RAELDLLGWENVDIF 204 L RA+ D W+ + + Sbjct: 178 VQDEMTVLTSVATYRADPD-QAWKRLKLR 205 >gi|254226821|ref|ZP_04920393.1| ribonuclease D [Vibrio cholerae V51] gi|125620668|gb|EAZ49030.1| ribonuclease D [Vibrio cholerae V51] Length = 381 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 13 IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 71 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G + A Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTQAGWWEAALQ 189 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216 >gi|325497053|gb|EGC94912.1| ribonuclease D [Escherichia fergusonii ECD227] Length = 375 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + + C A R AIA+DTE + +L ++QL G+ I + ++ Sbjct: 5 LITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLT--IRD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L D K H G D+ V FG +P+ T++ + G Sbjct: 63 WSPLKSVLRDPAITKFLHAGSEDLEVFLNKFGEMPQPLIDTQVLAAFC-GRPMSWGFASM 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A Sbjct: 122 VEEYSGVILDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMAETEASGWLPAALD 181 Query: 183 CCNFLMDRAE 192 C + R + Sbjct: 182 ECRLMQMRRQ 191 >gi|153826834|ref|ZP_01979501.1| ribonuclease D [Vibrio cholerae MZO-2] gi|149739355|gb|EDM53601.1| ribonuclease D [Vibrio cholerae MZO-2] Length = 381 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 13 IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 71 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216 >gi|74311884|ref|YP_310303.1| ribonuclease D [Shigella sonnei Ss046] gi|73855361|gb|AAZ88068.1| RNase D [Shigella sonnei Ss046] Length = 375 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA DTE + +L ++QL G+ I + G + Sbjct: 7 TTDDALASLCEAVRVFPAIAQDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RLMQMRRQ 191 >gi|157145434|ref|YP_001452753.1| ribonuclease D [Citrobacter koseri ATCC BAA-895] gi|157082639|gb|ABV12317.1| hypothetical protein CKO_01177 [Citrobacter koseri ATCC BAA-895] Length = 371 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 7/200 (3%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + C A R AIA+DTE + +L ++QL G+ I G + Sbjct: 3 TTDDALATLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHVALIDP--HGITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V TFG +P+ T+I + G ++ Sbjct: 61 PLRAVLRDTAITKFLHAGSEDLEVFLNTFGELPQPLIDTQILAAFC-GRPLSWGFAAMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EFTGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPITKKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAELDLL---GWENV 201 + R + L W ++ Sbjct: 180 RLMQQRRQEILAPEDAWRDI 199 >gi|262276742|ref|ZP_06054535.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114] gi|262223845|gb|EEY74304.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114] Length = 206 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 78/208 (37%), Positives = 124/208 (59%), Gaps = 4/208 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M + + DI + + + +IA+D E GL P D+L ++QL G V +++ G+ Sbjct: 1 MKNYKFYLSDIDGDTSLKNASSIAIDGEFSGLNPLTDKLHLLQLCDGSDFVHLVKF-EGK 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 NAPNL +L + K +KIFH+GR D+A L + V +F TKI S+++R ++ HGLK Sbjct: 60 YNAPNLKEILENNKIKKIFHFGRADLAFLKQHLDIHVTNIFDTKIGSKISRKFSPHHGLK 119 Query: 121 DNLKELLGINISKAQQSSDWSA--DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 D ++L+ IN+SK Q+SDW ++ S++Q+ YA DV++LH ++ + + L+R + + Sbjct: 120 DLCRDLININLSKEYQTSDWGKKIEEYSEDQILYACKDVLYLHKIKNELEKILKRENKLE 179 Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206 LA C FL R LDL+G DIF H Sbjct: 180 LAEQCFKFLETRTALDLVGLTG-DIFEH 206 >gi|153801848|ref|ZP_01956434.1| ribonuclease D [Vibrio cholerae MZO-3] gi|153829828|ref|ZP_01982495.1| ribonuclease D [Vibrio cholerae 623-39] gi|229515363|ref|ZP_04404823.1| ribonuclease D [Vibrio cholerae TMA 21] gi|229528995|ref|ZP_04418385.1| ribonuclease D [Vibrio cholerae 12129(1)] gi|124122620|gb|EAY41363.1| ribonuclease D [Vibrio cholerae MZO-3] gi|148874687|gb|EDL72822.1| ribonuclease D [Vibrio cholerae 623-39] gi|229332769|gb|EEN98255.1| ribonuclease D [Vibrio cholerae 12129(1)] gi|229348068|gb|EEO13027.1| ribonuclease D [Vibrio cholerae TMA 21] Length = 381 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 13 IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 71 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216 >gi|161503057|ref|YP_001570169.1| ribonuclease D [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864404|gb|ABX21027.1| hypothetical protein SARI_01122 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 371 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 4 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGADVALIDPL--GITDWSP 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 62 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K++ +DW A LS+ Q +YAA+DV +L + + + + G A C Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180 Query: 186 FLMDRAE 192 + R + Sbjct: 181 LMQQRRQ 187 >gi|153217090|ref|ZP_01950854.1| ribonuclease D [Vibrio cholerae 1587] gi|124113892|gb|EAY32712.1| ribonuclease D [Vibrio cholerae 1587] Length = 381 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 13 IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 71 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216 >gi|323166513|gb|EFZ52276.1| ribonuclease D [Shigella sonnei 53G] Length = 371 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A R AIA DTE + +L ++QL G+ I + G + Sbjct: 3 TTDDALASLCEAVRVFPAIAQDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RLMQMRRQ 187 >gi|218548642|ref|YP_002382433.1| ribonuclease D [Escherichia fergusonii ATCC 35469] gi|218356183|emb|CAQ88800.1| ribonuclease D [Escherichia fergusonii ATCC 35469] gi|324113537|gb|EGC07512.1| ribonuclease D [Escherichia fergusonii B253] Length = 375 Score = 223 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + + C A R AIA+DTE + +L ++QL G+ I + ++ Sbjct: 5 LITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLT--IRD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L D K H G D+ V FG +P+ T++ + G Sbjct: 63 WSPLKSVLRDPAITKFLHAGSEDLEVFLNKFGEMPQPLIDTQVLAAFC-GRPMSWGFASM 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A Sbjct: 122 VEEYSGVILDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMAETEASGWLPAALD 181 Query: 183 CCNFLMDRAE 192 C + R + Sbjct: 182 ECRLMQMRRQ 191 >gi|188533676|ref|YP_001907473.1| ribonuclease D [Erwinia tasmaniensis Et1/99] gi|188028718|emb|CAO96580.1| Ribonuclease D [Erwinia tasmaniensis Et1/99] Length = 373 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 4/191 (2%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + C AR V A+A+DTE + RL ++QL G+ I + Sbjct: 4 TMITTNAALSEACQRARQVPALALDTEFVRTRTYYPRLGLIQLYDGETISLIDPLP--IT 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + +L D+K K H G D+ V + FGV +P+ T+I + + G Sbjct: 62 DWTPFSELLQDQKVIKYLHAGSEDLEVFCHEFGVLPQPMIDTQILAAFS-GRPLSCGFAT 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ GI + K++ +DW A LS++Q QYAA+DV +L + + + + G+ A Sbjct: 121 VVESFTGIALDKSESRTDWLARPLSEKQCQYAAADVFYLLPIAGKLVAEAESAGQMAAAL 180 Query: 182 SCCNFLMDRAE 192 C L R Sbjct: 181 DECRLLCQRRT 191 >gi|297183461|gb|ADI19592.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0770_37D02] Length = 214 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 85/211 (40%), Positives = 120/211 (56%), Gaps = 6/211 (2%) Query: 1 MTTIRVHEGDIPAECA--ARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIA 57 MT I + DI AE ++A+DTE GL P RD+L +VQ S G+ II+ Sbjct: 5 MTKIYKFQDDIAAEALKELENHSSLAIDTEGSGLQIPHRDKLSLVQFSTGNNDAYIIQPN 64 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 APN+ +L ++K KI HY R+DI+ L Y V+ +F TK+AS+L RTY+ H Sbjct: 65 RKDYKAPNIKKILENDKITKIGHYLRYDISGLEYFLKCNVKNIFDTKLASKLCRTYSQNH 124 Query: 118 GLKDNLKELLGINISKAQQSSDWSA--DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 GLKD E G + K SSDW+ D+L+D QLQY ++DV++LH ++ + + L R Sbjct: 125 GLKDLALEFCGKKLDKRLGSSDWNKNLDELTDAQLQYCSNDVIYLHKIKDELYKMLVREN 184 Query: 176 RSDLATSCCNFLMDRAELDLLGWENVDIFSH 206 R +L +C FL R +LD G+ DIF H Sbjct: 185 RLELYENCIKFLKTRIKLDQSGFAE-DIFQH 214 >gi|213019164|ref|ZP_03334971.1| putative ribonuclease D [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995273|gb|EEB55914.1| putative ribonuclease D [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 378 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 10/193 (5%) Query: 17 ARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ IAVDTE + RL ++Q+S G+ + I+ + + + ++++ + Sbjct: 2 AKDPKFIAVDTEFIRNNLTYYPRLSLIQISYGEKSF-IVDVLVPGIDLSLIKKIMLNREI 60 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-A 134 K+FH R DI L P+F T++A+ Y + G +++ G+ + K Sbjct: 61 TKVFHSCRQDIESLLTVLKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGVALDKIK 120 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL- 193 ++SDW LS++QL YA +DV+HL+ L KL+ R ++D + Sbjct: 121 AKNSDWLKRPLSEDQLDYAVNDVIHLYDLHQILCNKLEENNRMGWFQEEMESIVDVNKYL 180 Query: 194 ----DLLGWENVD 202 D W+ + Sbjct: 181 HNPKD--AWKRIK 191 >gi|315180685|gb|ADT87599.1| ribonuclease D [Vibrio furnissii NCTC 11218] Length = 371 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 4/179 (2%) Query: 9 GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 D+ C AR D + +DTE + +L ++QL G+ I +A V Sbjct: 10 NDLERVCSLARDADVVMLDTEFVRTRTFYPQLGLIQLFDGENLSLIDPLA--MDEMTPFV 67 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ H DI V +FG P+ T+I + Y G +LL Sbjct: 68 ELLQDTSVLKVLHACGEDIEVFKTSFGCVPFPMVDTQIMAAFL-GYGLSTGFAALAHDLL 126 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 + + K++ +DW A LS +QL+YAA+DV +L + Q EK+ + G + A Sbjct: 127 NVELDKSESRTDWLARPLSQKQLEYAAADVFYLMPMYEQLLEKVTQAGWWEAAQQESEL 185 >gi|149186862|ref|ZP_01865172.1| ribonuclease D [Erythrobacter sp. SD-21] gi|148829529|gb|EDL47970.1| ribonuclease D [Erythrobacter sp. SD-21] Length = 411 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 12/210 (5%) Query: 1 MTTIR--VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 M I + + D A R D + VDTE + LC+VQ++ + I + Sbjct: 1 MMKIHDLITDTDTLAAMCERLAKSDFVTVDTEFMRENTYWPELCLVQIANEEEAAAIDPL 60 Query: 57 AAGQKNAPNLVGMLVD-EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 A G P L +L D E+ K+FH G D+ +++ G P+F T+IA + + Sbjct: 61 ADGIDLQP-LWDLLCDNEEVLKVFHAGGQDVEIVYNFTGKTPHPIFDTQIA-MMAISQNE 118 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G + ++ +GI + K + +DW L+D Q++YA DV HL + +KL + G Sbjct: 119 QIGYANLVESWMGITVDKGARFTDWGRRPLTDRQIEYAIGDVTHLSKIFPMILKKLIKTG 178 Query: 176 RSDLATSCCNFLMDRAEL----DLLGWENV 201 R + + L D A DL W+ + Sbjct: 179 RGVWLDAEMDKLADPANYANNADL-AWKRI 207 >gi|262171029|ref|ZP_06038707.1| ribonuclease D [Vibrio mimicus MB-451] gi|261892105|gb|EEY38091.1| ribonuclease D [Vibrio mimicus MB-451] Length = 381 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 13 IITQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVIDE 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 71 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ G + A Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQ 189 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216 >gi|15641986|ref|NP_231618.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591319|ref|ZP_01678609.1| ribonuclease D [Vibrio cholerae 2740-80] gi|147675516|ref|YP_001217510.1| ribonuclease D [Vibrio cholerae O395] gi|153819311|ref|ZP_01971978.1| ribonuclease D [Vibrio cholerae NCTC 8457] gi|227082111|ref|YP_002810662.1| ribonuclease D [Vibrio cholerae M66-2] gi|229507927|ref|ZP_04397432.1| ribonuclease D [Vibrio cholerae BX 330286] gi|229511838|ref|ZP_04401317.1| ribonuclease D [Vibrio cholerae B33] gi|229518974|ref|ZP_04408417.1| ribonuclease D [Vibrio cholerae RC9] gi|229607472|ref|YP_002878120.1| ribonuclease D [Vibrio cholerae MJ-1236] gi|254849070|ref|ZP_05238420.1| ribonuclease D [Vibrio cholerae MO10] gi|298497984|ref|ZP_07007791.1| ribonuclease D [Vibrio cholerae MAK 757] gi|9656525|gb|AAF95132.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546819|gb|EAX56983.1| ribonuclease D [Vibrio cholerae 2740-80] gi|126510131|gb|EAZ72725.1| ribonuclease D [Vibrio cholerae NCTC 8457] gi|146317399|gb|ABQ21938.1| ribonuclease D [Vibrio cholerae O395] gi|227009999|gb|ACP06211.1| ribonuclease D [Vibrio cholerae M66-2] gi|227013881|gb|ACP10091.1| ribonuclease D [Vibrio cholerae O395] gi|229343663|gb|EEO08638.1| ribonuclease D [Vibrio cholerae RC9] gi|229351803|gb|EEO16744.1| ribonuclease D [Vibrio cholerae B33] gi|229355432|gb|EEO20353.1| ribonuclease D [Vibrio cholerae BX 330286] gi|229370127|gb|ACQ60550.1| ribonuclease D [Vibrio cholerae MJ-1236] gi|254844775|gb|EET23189.1| ribonuclease D [Vibrio cholerae MO10] gi|297542317|gb|EFH78367.1| ribonuclease D [Vibrio cholerae MAK 757] Length = 381 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 13 IISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 71 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQ 189 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216 >gi|296446899|ref|ZP_06888835.1| ribonuclease D [Methylosinus trichosporium OB3b] gi|296255574|gb|EFH02665.1| ribonuclease D [Methylosinus trichosporium OB3b] Length = 388 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 6/200 (3%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D+ A CA + VDTE L ++C++QL+ + + +A G +P Sbjct: 5 TSTEDLAAACARLSRHPFVTVDTEFLRETTFWPKVCVIQLASPEEAFAVDTLAEGLDLSP 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 ++ D K+FH R D+ +++ + P+F T++A+ + + +Q + +K Sbjct: 65 -FFELMADASVVKVFHAARQDLEIIWRLARLIPTPLFDTQVAAMVC-GFGDQASYVELVK 122 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 + ++ K+ + +DWS LS Q+ YA +DV HL + ++L+R R D Sbjct: 123 AIAKESLDKSSRFTDWSKRPLSVAQIDYAIADVTHLRQIYTHLRQRLERSNRLDWLVDEM 182 Query: 185 NFLMDRAELDL---LGWENV 201 L + WE + Sbjct: 183 RTLTSPETYEQSPENAWERL 202 >gi|103487237|ref|YP_616798.1| ribonuclease D [Sphingopyxis alaskensis RB2256] gi|98977314|gb|ABF53465.1| ribonuclease D [Sphingopyxis alaskensis RB2256] Length = 395 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 4/191 (2%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + D IAVDTE + LC++Q++ + I +A G P L ++ +E K Sbjct: 21 KDSDFIAVDTEFMRENTFWPELCLIQVADTEHAAAIDPMAQGMDLKPLLDLLVDNEDMLK 80 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FH G D+ ++F G P+F T+I ++ Q G + ++ LG+ + K + Sbjct: 81 VFHAGGQDVEIIFNLTGKTPHPIFDTQI-GQMALGQAEQVGYSNLVEAWLGLQLDKGARF 139 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL-- 195 +DWS L Q+ YA DV HL + +KL R GR L D A + Sbjct: 140 TDWSRRPLDKRQIDYAIGDVTHLAKIFPMMLDKLIRTGRGHWLDEEMEKLADPANYSVDP 199 Query: 196 -LGWENVDIFS 205 W+ + I S Sbjct: 200 DKAWQRIKIPS 210 >gi|323499349|ref|ZP_08104325.1| ribonuclease D [Vibrio sinaloensis DSM 21326] gi|323315534|gb|EGA68569.1| ribonuclease D [Vibrio sinaloensis DSM 21326] Length = 371 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 13/204 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I ++ A C AR D + +DTE + +L ++QL G+ I ++ Sbjct: 5 IVTQTSELVAVCKQARESDVVMLDTEFVRTRTFYPQLGLIQLFDGEHLSLIDP--TELED 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V +FG P+ T++ + + G Sbjct: 63 MTAFVQLLQDTSVLKVLHACGEDLEVFHNSFGCLPYPMVDTQLMAAFL-GHGLSTGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + L + + K++ +DW A L+D+QL YAA+DV +L L + + G + A Sbjct: 122 VDHYLQVELDKSESRTDWLARPLTDKQLDYAAADVFYLWPLYEKLLAAVTEAGWWEAAQQ 181 Query: 183 CCNFL---------MDRAELDLLG 197 + L + A LD+ G Sbjct: 182 ESDLLASKRIKNVDPELAYLDVKG 205 >gi|213865181|ref|ZP_03387300.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 200 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 3/177 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R AIA+DTE + +L ++QL G I + G + L +L D Sbjct: 3 AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 60 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V FG P+ T+I + G ++E G+ + K++ Sbjct: 61 TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEEYTGVALDKSE 119 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A LS+ Q +YAA+DV +L + + + + G A C + R + Sbjct: 120 SRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQRRQ 176 >gi|297579488|ref|ZP_06941416.1| ribonuclease D [Vibrio cholerae RC385] gi|297537082|gb|EFH75915.1| ribonuclease D [Vibrio cholerae RC385] Length = 381 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 13 IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 71 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216 >gi|182678372|ref|YP_001832518.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039] gi|182634255|gb|ACB95029.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039] Length = 388 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 7/205 (3%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 MT I + ++ C + VDTE L +LC+VQL+ + V + +A G Sbjct: 1 MTLIASTQ-ELRDVCQRLARQPFVTVDTEFLRETTFWPKLCVVQLASTEEAVAVDALAEG 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 +P L ++ +E K+FH R D+ +++ + P+F T++A+ + + +Q Sbjct: 60 LDLSP-LFELMANEATVKVFHAARQDLEIIWNLAKLIPTPLFDTQVAAMVC-GFGDQISY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 D ++ + +++ K+ + +DWS LS Q+ YA +DV +L + L KL+ R Sbjct: 118 GDLVQTVTRVSLDKSSRFTDWSRRPLSPAQVDYAIADVTYLRDIYLYLRRKLETSSRLAW 177 Query: 180 ATSCCNFLMDRAELDLL---GWENV 201 + L + + WE + Sbjct: 178 LSDEMALLSSPSTYEQAPETAWERL 202 >gi|237731840|ref|ZP_04562321.1| ribonuclease D [Citrobacter sp. 30_2] gi|226907379|gb|EEH93297.1| ribonuclease D [Citrobacter sp. 30_2] Length = 371 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 7/200 (3%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + C A R AIA+DTE + +L ++QL G I G + Sbjct: 3 TTDDALATLCEAVREFPAIALDTEFVRTRTYYPQLGLIQLFDGKHVALIDP--QGITDWS 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K H G D+ V FG +P+ T+I + G ++ Sbjct: 61 PLRDILRDTAITKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFC-GRPMSWGFAAMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + + + + G A C Sbjct: 120 EFTGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPITTKLMVETEASGWLPAALDEC 179 Query: 185 NFLMDRAELDLL---GWENV 201 + R + L W ++ Sbjct: 180 RLMQQRRQEVLAPEDAWRDI 199 >gi|121729927|ref|ZP_01682350.1| ribonuclease D [Vibrio cholerae V52] gi|121628334|gb|EAX60840.1| ribonuclease D [Vibrio cholerae V52] Length = 350 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 5 IISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 63 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 122 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQ 181 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 182 ESELQVAKRTKVSNPELAYLDIKGAWQ 208 >gi|258626516|ref|ZP_05721356.1| ribonuclease D [Vibrio mimicus VM603] gi|258581227|gb|EEW06136.1| ribonuclease D [Vibrio mimicus VM603] Length = 385 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 17 IITQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVIDE 74 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 75 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 133 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ G + A Sbjct: 134 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQ 193 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 194 ESELQVAKRTKVSNPELAYLDIKGAWQ 220 >gi|283832800|ref|ZP_06352541.1| ribonuclease D [Citrobacter youngae ATCC 29220] gi|291072487|gb|EFE10596.1| ribonuclease D [Citrobacter youngae ATCC 29220] Length = 371 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 7/195 (3%) Query: 11 IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + C A R AIA+DTE + +L ++QL G I G + L + Sbjct: 8 LATLCEAVREFPAIALDTEFVRTRTYYPQLGLIQLFDGKHVALIDP--QGITDWSPLRAI 65 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K H G D+ V FG +P+ T+I + G ++E G+ Sbjct: 66 LRDTAITKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFC-GRPLSWGFAAMVEEFTGV 124 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K++ +DW A L++ Q +YAA+DV +L + + + G A C + Sbjct: 125 ALDKSESRTDWLARPLTERQCEYAAADVWYLLPITTTLMAETEASGWLPAALDECRLMQQ 184 Query: 190 RAELDLL---GWENV 201 R + L W ++ Sbjct: 185 RRQEILAPEDAWRDI 199 >gi|85373619|ref|YP_457681.1| ribonuclease D [Erythrobacter litoralis HTCC2594] gi|84786702|gb|ABC62884.1| ribonuclease D [Erythrobacter litoralis HTCC2594] Length = 401 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 2/185 (1%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + C + + +DTE + LC++Q+ + + +A G P L M Sbjct: 13 LAELCDRLAQHEFVCIDTEFMRENTYWPELCLIQIGNEEEAAAVDPLADGIDLQPLLDLM 72 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 +E K+FH G D+ +++ G P+F T+IA + + + Q G + ++ L Sbjct: 73 CENEDILKVFHAGGQDVEIVYNLTGKTPFPIFDTQIA-MMAISQSEQIGYANLVESWLNK 131 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 I K + +DWS L+D Q++YA DV +L + + KL + GR + + L D Sbjct: 132 TIDKGARFTDWSRRPLTDRQIEYAIGDVTYLAKIFPKILNKLVKTGRGAWLNAEMDKLAD 191 Query: 190 RAELD 194 A + Sbjct: 192 PANYE 196 >gi|254562078|ref|YP_003069173.1| ribonuclease D [Methylobacterium extorquens DM4] gi|254269356|emb|CAX25322.1| Ribonuclease D (RNase D) [Methylobacterium extorquens DM4] Length = 384 Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 1/193 (0%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M I + A + VDTE + +LC++Q++ DG ++ A Sbjct: 1 MELISATQALSDACTQFAAQPFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKD 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + ++ DE K+FH R D+ +++ G+ +P F T++A+ + Y + + Sbjct: 61 LDLKPFFDLMADESTVKVFHSARQDLEIIWLLGGLLPQPFFDTQVAAMVC-GYGDSVSYE 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++ I K+ + +DWS LS+ QL YA SDV HL + +L R Sbjct: 120 QLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWL 179 Query: 181 TSCCNFLMDRAEL 193 L Sbjct: 180 DEEMAVLTSPETY 192 >gi|255745267|ref|ZP_05419216.1| ribonuclease D [Vibrio cholera CIRS 101] gi|262155992|ref|ZP_06029112.1| ribonuclease D [Vibrio cholerae INDRE 91/1] gi|255737097|gb|EET92493.1| ribonuclease D [Vibrio cholera CIRS 101] gi|262030170|gb|EEY48814.1| ribonuclease D [Vibrio cholerae INDRE 91/1] Length = 373 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 13/204 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 5 IISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 63 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 122 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQ 181 Query: 183 CCNFL---------MDRAELDLLG 197 + A LD+ G Sbjct: 182 ESELQVAKRTKVSNPELAYLDIKG 205 >gi|259908266|ref|YP_002648622.1| ribonuclease D [Erwinia pyrifoliae Ep1/96] gi|224963888|emb|CAX55391.1| Ribonuclease D [Erwinia pyrifoliae Ep1/96] gi|283478197|emb|CAY74113.1| rnd [Erwinia pyrifoliae DSM 12163] Length = 369 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + C AR V A+A+DTE + RL ++QL G+ I + + Sbjct: 3 TTNAALSDVCLRARRVPALALDTEFVRTRTYYPRLGLIQLYDGETISLIDPLP--ITDWT 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L+D++ K H G D+ V + FGV +P+ T+I + + G ++ Sbjct: 61 PFRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFS-GRPLSCGFATIVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 GI + K++ +DW A LS++Q +YAA+DV +L + + ++ + G+ A C Sbjct: 120 SFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIASKLVDETEAAGQMAAALDEC 179 Query: 185 NFLMDRAE 192 L R Sbjct: 180 RLLCQRRT 187 >gi|260598272|ref|YP_003210843.1| ribonuclease D [Cronobacter turicensis z3032] gi|260217449|emb|CBA31565.1| Ribonuclease D [Cronobacter turicensis z3032] Length = 409 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 5/188 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I ++ + A C AR A+A+DTE + +L ++QL G+ I + Sbjct: 42 ITTNDA-LAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLT--ITE 98 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L D+ K H G D+ V FG+ P T++ + + G Sbjct: 99 WAPFQALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFV-GHPLSCGFATL 157 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ G+ + K++ +DW A L++ Q YAA+DV +L + + E+++ G A + Sbjct: 158 VEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAIN 217 Query: 183 CCNFLMDR 190 C + R Sbjct: 218 ECRLMTQR 225 >gi|310767817|gb|ADP12767.1| ribonuclease D [Erwinia sp. Ejp617] Length = 369 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + C AR V A+A+DTE + RL ++QL G+ I + + Sbjct: 3 TTNAALSDVCLRARRVPALALDTEFVRTRTYYPRLGLIQLYDGETISLIDPLP--ITDWT 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L+D++ K H G D+ V + FGV +P+ T+I + + G ++ Sbjct: 61 PFRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFS-GRPLSCGFATIVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 GI + K++ +DW A LS++Q +YAA+DV +L + + ++ + G+ A C Sbjct: 120 SFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIASKLVDETEAAGQMAAALDEC 179 Query: 185 NFLMDRAE 192 L R Sbjct: 180 RLLCQRRT 187 >gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM 13280] gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM 13280] Length = 377 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 4/188 (2%) Query: 7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A C AR AIA+DTE L +LC+VQ++ D V I +A + Sbjct: 5 TNEDLTAFCNRARAFSAIAIDTEFLREKTYHAKLCLVQVATPDECVVIDPLA--IDDLGP 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L ++ D K+FH D+ VL + G P+F T++A+ Q + + Sbjct: 63 LAELMTDVDTLKVFHACSQDMEVLCHALGSVPAPIFDTQVAAGFLGERA-QCSYHNLVST 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+++ K + +DWS LS +Q++YA DV +L KL LGR+ Sbjct: 122 FCGVSLPKTESLTDWSRRPLSPKQIEYALDDVRYLIDAYRVIESKLHSLGRTAWVRDEIR 181 Query: 186 FLMDRAEL 193 L D A Sbjct: 182 PLADPAHY 189 >gi|271500522|ref|YP_003333547.1| ribonuclease D [Dickeya dadantii Ech586] gi|270344077|gb|ACZ76842.1| ribonuclease D [Dickeya dadantii Ech586] Length = 373 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 6/197 (3%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I EG + A CA A V +A+DTE + +L ++QL GD I +A N Sbjct: 6 ITTDEG-LSAVCALACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLSLIDPLAIS--N 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L + + K H G D+ V FG P T+I + R +G Sbjct: 63 WEPFRALLQNPQVTKYLHAGSEDLEVFLNAFGCLPSPFIDTQILAAF-RGKPLSYGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + I + K++ +DW A LS++Q QYAA+DV +L + E+ + G + A Sbjct: 122 VADYRQIVLDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARVLVEETRLAGWMEAALD 181 Query: 183 CCNFLMDRAELDLLGWE 199 C L R + D+L E Sbjct: 182 ECQLLCQRRQ-DVLAPE 197 >gi|269215504|ref|ZP_06159358.1| ribonuclease D [Slackia exigua ATCC 700122] gi|269130991|gb|EEZ62066.1| ribonuclease D [Slackia exigua ATCC 700122] Length = 399 Score = 221 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 4/194 (2%) Query: 1 MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + A AR D +A+DTE L +LC++QL + +V + + Sbjct: 1 MPLYITDTKQLEEFVAFARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKV- 59 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + L ++VD K+FH D+ +LF+ V P+F T++A+ L T Q G Sbjct: 60 -HDLSPLRDLMVDTSVVKVFHAATQDLDILFHELDVMPDPIFDTQVAAALL-GQTVQVGY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + G+ + KA +DW+ LS Q+ YA DVV+L + Q TE+L+ LGR+ Sbjct: 118 GTLVLNECGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIYRQLTERLEALGRASW 177 Query: 180 ATSCCNFLMDRAEL 193 L+D + Sbjct: 178 LEHDFAELVDPSRY 191 >gi|291617685|ref|YP_003520427.1| Rnd [Pantoea ananatis LMG 20103] gi|291152715|gb|ADD77299.1| Rnd [Pantoea ananatis LMG 20103] Length = 373 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 5/195 (2%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 ++ + C AR A+A+DTE + +L ++QL G+ V I + ++ Sbjct: 8 NDDRLAEVCNKARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPV--RDWSP 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 + +L D + K H G D+ V + F V +P+ T+I + + G + Sbjct: 66 FIELLTDTRVTKFLHAGGEDLEVFLHRFAVLPQPMIDTQILAAFS-GQPLSWGFASMVAH 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + K++ +DW A L++ Q QYAA+DV +L + Q +++++ G A S C Sbjct: 125 FTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAHQLMQQVEQAGNMAAALSECE 184 Query: 186 FLMDRAELDLLGWEN 200 L R LD L E+ Sbjct: 185 NLCQR-RLDSLAPED 198 >gi|296284765|ref|ZP_06862763.1| ribonuclease D [Citromicrobium bathyomarinum JL354] Length = 391 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 6/202 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + + C D + VDTE + LC+VQ+ I +A G Sbjct: 7 ITTTDA-LADLCDRLGKGDFVCVDTEFMRENTYWPELCLVQIGDEHEAAAIDPLADGIDL 65 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 P L + +E KIFH G D+ + + G P+F T+IA + + + Q G + Sbjct: 66 KPLLDLLTENEDVLKIFHAGSQDVEIFYNLTGKTPHPIFDTQIA-MMAISQSEQIGYANL 124 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ L I K + +DWS L+D QL+YA DV +L + + +KL + R + Sbjct: 125 VEHWLDKTIDKGARFTDWSRRPLTDRQLEYAIGDVTYLAKIFPRILKKLMKTDRGMWLNA 184 Query: 183 CCNFLMDRAELDL---LGWENV 201 L D + W+ + Sbjct: 185 EMEKLADPENYAIEPDKAWKRI 206 >gi|90411623|ref|ZP_01219633.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK] gi|90327513|gb|EAS43866.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK] Length = 374 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + C AR + +DTE + +L ++Q+ GD V I I ++ Sbjct: 5 IITTTQRLDTICDHARTYSVVMLDTEFVRTRTLYPKLGLIQMFDGDNLVLIDPIE--IED 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L D+ K+ H D+ V + G P+ T++ + + G Sbjct: 63 LTPFWDLLRDQSVIKVLHACGEDLEVFQHHAGCLPTPMIDTQLMAAFL-GHGVSAGFGSL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + E +G+++ K + ++W A L+D+QL YAA+DV +L L EK++ G D Sbjct: 122 VSEYVGVDLEKGEARTNWLARPLTDKQLDYAAADVFYLLPLYETLLEKVKAKGWMDALEL 181 Query: 183 CCNFLMDRAE 192 C LM + Sbjct: 182 ECTALMQKRT 191 >gi|24215616|ref|NP_713097.1| ribonuclease D [Leptospira interrogans serovar Lai str. 56601] gi|45657025|ref|YP_001111.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196771|gb|AAN50115.1|AE011455_9 ribonuclease D [Leptospira interrogans serovar Lai str. 56601] gi|45600262|gb|AAS69748.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 212 Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 86/209 (41%), Positives = 120/209 (57%), Gaps = 6/209 (2%) Query: 2 TTIR--VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 +TI+ + GD+ + Y D +AVD E +GL PRRDRLC+VQ+ V +++I Sbjct: 6 STIKPELFPGDLSEQRFEEYKLDDRLAVDCEMMGLNPRRDRLCVVQICDSSNNVSLVQIL 65 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 QK AP L + + + KIFH+ R D L Y G+ ++ VFCTKIAS+L RTYT++H Sbjct: 66 PDQKEAPLLKSLFENPEIVKIFHFARMDSLFLRYRLGINLQNVFCTKIASKLARTYTDKH 125 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 GLKD +KE I K QSSDW L+ +Q++YA+ DV +L +L + TE L R GR Sbjct: 126 GLKDLIKEFYDEVIDKKNQSSDWGKKILTKDQIEYASGDVKYLISLEQKLTEILVREGRD 185 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA L ++D L E +F H Sbjct: 186 SLAREAFRCLPVFNQIDWL--EMPTLFEH 212 >gi|258621252|ref|ZP_05716286.1| ribonuclease D [Vibrio mimicus VM573] gi|258586640|gb|EEW11355.1| ribonuclease D [Vibrio mimicus VM573] Length = 373 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 5 IITQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVINE 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 63 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ G + A Sbjct: 122 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQ 181 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 182 ESELQVAKRTKVSNPELAYLDIKGAWQ 208 >gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2] gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2] Length = 377 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 5/191 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I HE + A C AAR +A+DTE L RLC+VQ++ + + + + ++ Sbjct: 3 ISTHE-QLAALCDAARSFSIVAIDTEFLRERTYHPRLCLVQVATPEVSALVDPLE--IED 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L ++ DE KIFH D+ VL V P+F T++A+ Q Sbjct: 60 LSPLAALMADEGTRKIFHACSQDMEVLLNALDVLPNPIFDTQVAAAFLGERV-QMSYDGL 118 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +K G+++ K +DWS L+ EQ+ YA DV +L E+L++ GR A Sbjct: 119 VKAFCGVSLPKTASLTDWSHRPLTAEQMDYAEDDVRYLICAYEVMAERLEQRGRMSWALD 178 Query: 183 CCNFLMDRAEL 193 L D + Sbjct: 179 EMRPLADESHY 189 >gi|229523996|ref|ZP_04413401.1| ribonuclease D [Vibrio cholerae bv. albensis VL426] gi|229337577|gb|EEO02594.1| ribonuclease D [Vibrio cholerae bv. albensis VL426] Length = 381 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 13 IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMLDGENLSLIDP--TVLDE 70 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 71 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189 Query: 183 CCNFL---------MDRAELDLLG-WE 199 + A LD+ G W+ Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216 >gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279] gi|210159428|gb|EEA90399.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279] Length = 377 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 5/191 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I ++ D+ A C AR AIA+DTE L +LC+VQ++ D V I + + Sbjct: 3 ISTYD-DLSAFCGRARCHVAIAIDTEFLRERTYHAKLCLVQVATPDECVVIDPLT--IDD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L ++ D K+FH D+ VL +T GV P+F T++A+ Q + Sbjct: 60 LSPLAELMADVDTLKVFHACSQDMEVLVHTLGVCPAPIFDTQVAAGFLGERA-QCSYHNL 118 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + G+++ K + +DWS LS +Q++YA DV +L KL LGR+ Sbjct: 119 VHSFCGVSLPKTESLTDWSRRPLSPQQIEYAVDDVRYLIDAYRVIESKLHSLGRTAWVRD 178 Query: 183 CCNFLMDRAEL 193 L D A Sbjct: 179 EIRPLADPAHY 189 >gi|116327594|ref|YP_797314.1| ribonuclease D-related [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331795|ref|YP_801513.1| ribonuclease D-related [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120338|gb|ABJ78381.1| Ribonuclease D-related [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125484|gb|ABJ76755.1| Ribonuclease D-related [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 212 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 86/209 (41%), Positives = 119/209 (56%), Gaps = 6/209 (2%) Query: 2 TTIR--VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 +TI+ + GD+ + Y D +AVD E +GL PRRDRLC+VQ+ V +++I Sbjct: 6 STIKPELFLGDLSEKRLEEYKADDRLAVDCEMMGLNPRRDRLCVVQICDSSNNVSLVQIL 65 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 QK AP L + + + KIFH+ R D L Y G+ + VFCTKIAS+L RTYT++H Sbjct: 66 PDQKEAPLLKSLFENPEIVKIFHFARMDSLFLRYRLGISLENVFCTKIASKLARTYTDKH 125 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 GLKD +KE I K QSSDW L+ +Q++YA+ DV +L +L + TE L R GR Sbjct: 126 GLKDLIKEFYDEVIDKKNQSSDWGKKILTKDQIEYASGDVKYLISLEQKLTEILVREGRD 185 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206 LA L ++D L E +F H Sbjct: 186 SLAREAFRCLPVFNQIDWL--EMPSLFEH 212 >gi|257063921|ref|YP_003143593.1| ribonuclease D [Slackia heliotrinireducens DSM 20476] gi|256791574|gb|ACV22244.1| ribonuclease D [Slackia heliotrinireducens DSM 20476] Length = 392 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +LC++QL+ + V + + + L + DE Sbjct: 15 ARAHKVLAIDTEFMREKTYWPKLCLIQLATPERAVAVDPLR--LHDLSALNVLFQDENIL 72 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH R D+ ++ G P+F T+IA+ L +T Q G + LG+++ KA Sbjct: 73 KLFHASRQDLEIINIEMGCLPAPIFDTQIAAALL-GHTTQIGYGPLVMNELGVHLKKADS 131 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 +DWS L+ QLQYA DV++L L + KL++L R D S L D + + Sbjct: 132 YTDWSRRPLTKSQLQYALDDVIYLPKLYDSMSRKLKKLNRMDWLASDFRDLSDPSNYE 189 >gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix] gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix] Length = 392 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 4/191 (2%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I E + D IA+DTE L +LC+VQ + D I + + + Sbjct: 7 IETPEALQAFLDSIAGTDWIALDTEFLREKTYYPQLCLVQAATLDQLACIDPL---RLDI 63 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D K+FH D+ +L+ G PVF T+IA+ + Y Q G + + Sbjct: 64 QQLAPLFRDPGITKVFHAASQDMELLYRELGFVPSPVFDTQIAASML-GYGEQVGYANLV 122 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 K +L ++ K+Q +DWS LS EQ++YAA DV HL L + +L R Sbjct: 123 KTVLERDLDKSQTRTDWSRRPLSAEQIRYAADDVRHLATLFNRLLHELDTHDRMHWLRPE 182 Query: 184 CNFLMDRAELD 194 L + A + Sbjct: 183 MEALSNPALYE 193 >gi|149191139|ref|ZP_01869398.1| ribonuclease D [Vibrio shilonii AK1] gi|148835067|gb|EDL52045.1| ribonuclease D [Vibrio shilonii AK1] Length = 289 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 12/190 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR D + +DTE + + +L ++QL G+ I + + + +L D Sbjct: 19 ARESDVVMLDTEFVRIRTFYPKLGLIQLYDGEQLSLIDPLTIS--DFTPFIELLQDASVL 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V +FG P+ T+I + + G + E LG+ + K++ Sbjct: 77 KVLHACGEDLEVFVNSFGCMPFPMVDTQIMAAFL-GHGLSTGFAALVDEYLGVELDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL--------- 187 +DW A L+D+QL YAA+DV +L L + +++ D A + L Sbjct: 136 RADWVARPLTDKQLDYAAADVYYLWPLYFKLFAQVEAKDWWDAAQQESDLLMQKRGKTPN 195 Query: 188 MDRAELDLLG 197 D A LD+ G Sbjct: 196 PDSAYLDIKG 205 >gi|90580077|ref|ZP_01235885.1| hypothetical ribonuclease D [Vibrio angustum S14] gi|90438962|gb|EAS64145.1| hypothetical ribonuclease D [Vibrio angustum S14] Length = 375 Score = 220 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 4/189 (2%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I + C AR A+ +DTE + RL ++QL G+ I + + Sbjct: 4 DIITTTEQLQQRCDSARTHTAVMLDTEFVRTRTLYPRLGLIQLFDGEQLSLIDPLEV--E 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + L +L D+ K+ H D+ V + G P+F T++ + + G Sbjct: 62 DMEPLWALLRDQSVIKVLHACGEDLEVFQHHAGCLPTPMFDTQLMAAFL-GHGISTGFGT 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +KE +G+ + K + ++W A L+++QL YAA+DV +L L K++ G + Sbjct: 121 LVKEYVGVELDKGEARTNWLARPLTEKQLDYAAADVYYLKPLFESLLAKVEERGYMEALQ 180 Query: 182 SCCNFLMDR 190 C +M R Sbjct: 181 QECESVMHR 189 >gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H] gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H] Length = 396 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 2/176 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + + +DTE + LC+VQL+ + V I +A G AP L +L Sbjct: 27 LQNEPFVTIDTEFVRERTYWPELCLVQLAGTEDVVLIDTLAPGIDLAP-LGALLAKPDCT 85 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH R D+ + + F VF T++A+ + + +Q G + + G +I KA + Sbjct: 86 KVFHAARQDLEIFLHIFDRLPASVFDTQVAAMVA-GFGDQVGYDSLVGAITGRSIDKAHR 144 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 SDWSA LS Q+ YAA+DV HL + ++L R A S L + Sbjct: 145 FSDWSARPLSKAQIAYAATDVTHLRTVYDALRKQLAEQDRLHWADSEQAILTEEKT 200 >gi|307256641|ref|ZP_07538420.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864689|gb|EFM96593.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 371 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 8/194 (4%) Query: 4 IRVHEGDIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 I H D + A A+A+DTE + +L ++QL GD I Sbjct: 5 IHYHWIDTDEKLKTVCENACRKSAVALDTEFIRTRSYYPKLGLIQLFDGDTVSLIDP--N 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + +G+L + K+ H D+ V + F P+ T+I + G Sbjct: 63 PISDFSPFIGLLTCQNVVKVLHACSEDLEVFQHLFKQLPTPLADTQIMAGFAGG-GISLG 121 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + L + + K +DW A L++EQLQYAA+DV +L + + L + Sbjct: 122 FAKLVAHYLNVELDKGASRTDWLARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQN 181 Query: 179 LATSCCNFLMDRAE 192 C +L+ + E Sbjct: 182 AVEQECRYLLSKRE 195 >gi|261868337|ref|YP_003256259.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413669|gb|ACX83040.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1] Length = 385 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 4/189 (2%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 ++ + ++ C AAR A+A+DTE + + +L ++Q+ GD I + + Sbjct: 15 SVVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDRVALIDPLP--IQ 72 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + + +L D KI H D+ V + F RP+ T++ + + G Sbjct: 73 DFSPFIKLLADTNLVKILHACSEDLDVFQHYFQQLPRPMCDTQVMAHFL-GFAGSTGFAT 131 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ I I K +DW A LSD QLQYAA+DV +L L Q ++L + + Sbjct: 132 LVQHYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYEQMQQQLTQTEWQSVVE 191 Query: 182 SCCNFLMDR 190 + C FL+++ Sbjct: 192 NECEFLLNK 200 >gi|165976032|ref|YP_001651625.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303249665|ref|ZP_07335870.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307245476|ref|ZP_07527563.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307252170|ref|ZP_07534068.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254430|ref|ZP_07536267.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258890|ref|ZP_07540621.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|165876133|gb|ABY69181.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302651477|gb|EFL81628.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853535|gb|EFM85753.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860314|gb|EFM92329.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862571|gb|EFM94528.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866914|gb|EFM98771.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 371 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 8/194 (4%) Query: 4 IRVHEGDIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 I H D + A A+A+DTE + +L ++QL GD I Sbjct: 5 IHYHWIDTDEKLKTVCENACRKSAVALDTEFIRTRSYYPKLGLIQLFDGDTVSLIDP--N 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + +G+L + K+ H D+ V + F P+ T+I + G Sbjct: 63 PISDFSPFIGLLTCQNVVKVLHACSEDLEVFQHLFKQLPTPLADTQIMAGFAGG-GISLG 121 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + L + + K +DW A L++EQLQYAA+DV +L + + L + Sbjct: 122 FAKLVAHYLNVELDKGASRTDWLARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQN 181 Query: 179 LATSCCNFLMDRAE 192 C +L+ + E Sbjct: 182 AVEQECRYLLSKRE 195 >gi|32035264|ref|ZP_00135282.1| COG0349: Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208098|ref|YP_001053323.1| ribonuclease D [Actinobacillus pleuropneumoniae L20] gi|190149931|ref|YP_001968456.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307249819|ref|ZP_07531795.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307261076|ref|ZP_07542755.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263258|ref|ZP_07544876.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096890|gb|ABN73718.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915062|gb|ACE61314.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306858121|gb|EFM90201.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306869208|gb|EFN01006.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871320|gb|EFN03046.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 371 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 8/194 (4%) Query: 4 IRVHEGDIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 I H D + A A+A+DTE + +L ++QL GD I Sbjct: 5 IHYHWIDTDEKLKTVCENACRKSAVALDTEFIRTRSYYPKLGLIQLFDGDTVSLIDP--N 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + +G+L + K+ H D+ V + F P+ T+I + G Sbjct: 63 SISDFSPFIGLLTCQNVVKVLHACSEDLEVFQHLFKQLPTPLADTQIMAGFAGG-GISLG 121 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + L + + K +DW A L++EQLQYAA+DV +L + + L + Sbjct: 122 FAKLVAHYLNVELDKGASRTDWLARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQN 181 Query: 179 LATSCCNFLMDRAE 192 C +L+ + E Sbjct: 182 AVEQECRYLLSKRE 195 >gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243] gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA] gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1] gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243] gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA] gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1] Length = 381 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 4/188 (2%) Query: 7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 ++ ++ A A + +A+DTE L +LC++QL+ D T + A + Sbjct: 5 NQENLAAFAERAMHSSVLAIDTEFLREKTYYAKLCLIQLATDDETAIVDPFAV--DDLKV 62 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L +E K+FH G D+ +L GV P+F T++A+ L +T Q G + Sbjct: 63 LAPVLRNENVMKLFHAGNQDLEILLREVGVLPHPLFDTQVAAALL-GHTQQIGYAALVHA 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G+ + K +DWS LSD QL+YAA DVV+L + + +L LGR Sbjct: 122 ECGVTLKKIDSFTDWSRRPLSDSQLEYAADDVVYLPRMYERMRAQLVELGRLSWLDRDFE 181 Query: 186 FLMDRAEL 193 L D A Sbjct: 182 DLADPARY 189 >gi|118340523|gb|ABK80573.1| putative ribonuclease D [uncultured marine Nitrospinaceae bacterium] Length = 386 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 14/188 (7%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + D + VDTE + R ++Q+ G+ I IA + L+ +L D + K Sbjct: 17 QSADVLVVDTEFVRERTYFHRTGLIQVGGGEHFAAIDPIA--LPDMTPLLELLKDPTKVK 74 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FH R D+ +L G + P+F T+IA+ L + Q + + LG I K++ Sbjct: 75 VFHAARQDLEILVRFCGQVIPPIFDTQIAAALV-GWGTQISFAKIVYKALGKKIHKSETY 133 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 +DW LSD Q++YA DV +L + + E+L+++GR D + Sbjct: 134 TDWCRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKKMGRLDWVQGE-----------VNA 182 Query: 198 WENVDIFS 205 WE+ F+ Sbjct: 183 WEDPKTFA 190 >gi|56551610|ref|YP_162449.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4] gi|241761264|ref|ZP_04759352.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752797|ref|YP_003225690.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543184|gb|AAV89338.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4] gi|241374171|gb|EER63668.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552160|gb|ACV75106.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 390 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 2/184 (1%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + A C+ D IA+DTE + LC++Q++ I +A G P + Sbjct: 13 LAALCSRLSRADFIAIDTEFIRENSYWPELCLIQIADDKEAAAIDPLAPGLDMTPLTDLL 72 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + +E K+FH G D+ ++ + G P+F T+IA+ + Q G + ++ L I Sbjct: 73 VNNEDILKVFHAGGQDLEIILHHTGKMPFPLFDTQIAA-MALGVGEQVGYSNLVERYLSI 131 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K + +DWS L QL YA +DV HL L ++L+ GR L D Sbjct: 132 KLDKGARFTDWSHRPLDRRQLDYAIADVTHLATLFPMLLKELRDKGRGAWLDQEMERLAD 191 Query: 190 RAEL 193 ++ Sbjct: 192 PSQY 195 >gi|254361720|ref|ZP_04977856.1| ribonuclease D [Mannheimia haemolytica PHL213] gi|261492043|ref|ZP_05988618.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495020|ref|ZP_05991488.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093246|gb|EDN74252.1| ribonuclease D [Mannheimia haemolytica PHL213] gi|261309336|gb|EEY10571.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312326|gb|EEY13454.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 372 Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 4/187 (2%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + A C AR +A+DTE + L ++QL G I + Sbjct: 12 TNEQLEAVCEQARKTKVVALDTEFIRTRTYYPILGLIQLFDGQQVSLIDP--NTISDFSP 69 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 V +L D+ K+ H D+ V Y F P+ T++ + G + Sbjct: 70 FVSLLADKNIIKVLHACSEDLEVFEYQFKQLPEPMLDTQVMAAFA-GIGISMGFAKLVSH 128 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 L I + K +DW A LS EQLQYAA+DV +L + + + L + C Sbjct: 129 YLNIELDKGASRTDWLARPLSAEQLQYAAADVWYLLPVYEKLAQALTKSTWQSAVAEECV 188 Query: 186 FLMDRAE 192 L+ +A+ Sbjct: 189 ALLKKAK 195 >gi|329296338|ref|ZP_08253674.1| ribonuclease D [Plautia stali symbiont] Length = 373 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 5/199 (2%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ H + A C AR A+A+DTE + +L ++QL G+ V I + Sbjct: 4 TLIDHNDQLAAVCQQARQHRAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLTIS-- 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + + +L D + K H G D+ V + FG P+ T+I + G Sbjct: 62 DWAPFIALLQDRQLTKFLHAGGEDLEVFLHRFGCLPEPMIDTQILAAFA-GQPLSWGFAA 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + I + K++ +DW A L++ Q QYAA+DV +L + Q + + G A Sbjct: 121 MVNHFNQIELDKSEARTDWLARPLTERQCQYAAADVAYLLPIAHQLVAQTEAAGNMAAAL 180 Query: 182 SCCNFLMDRAELDLLGWEN 200 S C L R LD+L E Sbjct: 181 SECATLCQR-RLDVLQPEE 198 >gi|251792786|ref|YP_003007512.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700] gi|247534179|gb|ACS97425.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700] Length = 385 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 5/192 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + CA A A+A+DTE + +L ++QL GD I ++ Sbjct: 16 LITEDESLAEVCALAGQQSAVALDTEFVRTRTFYPKLGLIQLYAGDEVALIDP--TTIQD 73 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + +L DE+ K+ H D+ V + F +P+ T++ + + N G Sbjct: 74 FSPFIALLADERVTKVLHASGEDLEVFQHYFQQLPQPMCDTQVVANFL-GFANSPGFATL 132 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +K I I K +DW A LSD QLQYAA+DV +L L Q +L + + Sbjct: 133 VKHYFQIEIDKGASCTDWLARPLSDTQLQYAAADVWYLLPLYQQMKAQLAQTEWQSAVEN 192 Query: 183 CCNFLMD-RAEL 193 C FL++ RA+ Sbjct: 193 ECEFLLNKRAQY 204 >gi|317048442|ref|YP_004116090.1| ribonuclease D [Pantoea sp. At-9b] gi|316950059|gb|ADU69534.1| ribonuclease D [Pantoea sp. At-9b] Length = 373 Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 6/202 (2%) Query: 1 MTTIRVHEGD-IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M + + D + A C AR A+A+DTE + +L ++QL G+ V I + Sbjct: 1 MNYSLIDQNDQLAAVCDKARQHSAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPL-- 58 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + V +L D + K H G D+ V + FG P+ T+I + G Sbjct: 59 NISDWAPFVALLRDTQVTKFLHAGGEDLEVFLHRFGCLPDPMVDTQILAAFA-GQPLSWG 117 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + I + K++ +DW A L+ Q +YAA+DV +L + Q + + G Sbjct: 118 FAAMVMHFNQIELDKSEARTDWLARPLTARQCEYAAADVAYLLPIAHQLVAQTEAAGHMA 177 Query: 179 LATSCCNFLMDRAELDLLGWEN 200 A S C+ L R LD+L E+ Sbjct: 178 AALSECDILCQR-RLDVLAPED 198 >gi|118590153|ref|ZP_01547556.1| probable ribonuclease d protein [Stappia aggregata IAM 12614] gi|118437125|gb|EAV43763.1| probable ribonuclease d protein [Stappia aggregata IAM 12614] Length = 394 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 3/187 (1%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + D+ A C D + VDTE L +LC++Q++ D + ++ G Sbjct: 3 VITKTKDLAAACQRLAAHDYVTVDTEFLRETTFWPKLCVIQMAGPDMAFIVDALSEGLDL 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 P ++ D K+FH R DI ++++ + P+F T++A+ + + + Sbjct: 63 EP-FFELMRDGSVTKVFHAARQDIEIIYHLGELIPAPLFDTQVAAMVC-GFGDSISYDQL 120 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + ++ G I K+ + +DW+ L+ +QL YA +DV HL L R Sbjct: 121 VYKVTGARIDKSSRFTDWARRPLTAKQLDYALADVTHLRDAYQFLKANLAEQDRIHWVQD 180 Query: 183 CCNFLMD 189 L Sbjct: 181 EMQVLTS 187 >gi|251789601|ref|YP_003004322.1| ribonuclease D [Dickeya zeae Ech1591] gi|247538222|gb|ACT06843.1| ribonuclease D [Dickeya zeae Ech1591] Length = 373 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 5/190 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I EG + A CA A V +A+DTE + +L ++QL GD I +A ++ Sbjct: 6 ITTDEG-LSAVCAQACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLSLIDPLA--IRD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L + + K H G D+ V FG P ++I + +G Sbjct: 63 WAPFRALLQNPQITKFLHAGSEDLEVFLNAFGCLPSPFIDSQILAAFLGKPL-SYGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + + + K++ +DW A LS++Q QYAA+DV +L + + + G D A Sbjct: 122 VADYRQVALDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARTLVAETRAAGWLDAALD 181 Query: 183 CCNFLMDRAE 192 C L R + Sbjct: 182 ECRLLCQRRQ 191 >gi|146312020|ref|YP_001177094.1| ribonuclease D [Enterobacter sp. 638] gi|145318896|gb|ABP61043.1| ribonuclease D [Enterobacter sp. 638] Length = 384 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 3/189 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I ++ R AIA+DTE + +L ++Q+ G I + G + Sbjct: 15 ITTNDALATLCDVTRDFPAIALDTEFVRTRTYYPQLGLIQMYDGKNVSLIDPL--GITDW 72 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 + +L++ K H G D+ V TFG+ P+ T+I + + G + Sbjct: 73 SPMRELLLNTAITKYLHAGSEDLEVFLNTFGIMPEPLIDTQILAAFS-GRPLSWGFAAMV 131 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +E GI + K++ +DW A L++ QL YAA+DV +L + Q ++ + G D A + Sbjct: 132 EEYTGIALDKSESRTDWLARPLTERQLDYAAADVFYLLPIAGQLMKEAEAAGWLDAALNE 191 Query: 184 CNFLMDRAE 192 C R + Sbjct: 192 CRMTQQRRQ 200 >gi|85708161|ref|ZP_01039227.1| ribonuclease D [Erythrobacter sp. NAP1] gi|85689695|gb|EAQ29698.1| ribonuclease D [Erythrobacter sp. NAP1] Length = 400 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 3/190 (1%) Query: 6 VHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + D A+ R + +AVDTE + LC+VQ++ + I +A G + Sbjct: 7 ITTSDALADLCERLSQSEFVAVDTEFMRENTYWPELCLVQIANTEEAAAIDPLADGIDLS 66 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L + +++ K+FH G D+ ++ G P+F T+I S + + + Q G + + Sbjct: 67 PLLELLTENDEVLKVFHAGGQDVEIIVNMTGKTPFPIFDTQI-SMMAISQSEQIGYANLV 125 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 L I + K + +DWS L+D Q++YA DV HL + + +KL + R + Sbjct: 126 DHWLNITVDKGARFTDWSRRPLTDRQIEYAIGDVTHLSKIFPKILKKLMKTERGAWLDAE 185 Query: 184 CNFLMDRAEL 193 L D + Sbjct: 186 MEKLADPSNY 195 >gi|293392299|ref|ZP_06636633.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952833|gb|EFE02952.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1] Length = 385 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 4/189 (2%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 ++ + ++ C AAR A+A+DTE + + +L ++Q+ GD I + + Sbjct: 15 SVVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDQVALIDPLP--IQ 72 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + + +L D KI H D+ V F RP+ T++ + + G Sbjct: 73 DFSPFIELLADTNLVKILHACSEDLDVFQRYFQQLPRPMCDTQVMAHFL-GFAGSTGFAT 131 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ I I K +DW A LSD QLQYAA+DV +L L Q ++L + Sbjct: 132 LVQHYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYGQMQQQLTQTEWQSAVE 191 Query: 182 SCCNFLMDR 190 + C FL+++ Sbjct: 192 NECEFLLNK 200 >gi|89075742|ref|ZP_01162130.1| hypothetical ribonuclease D [Photobacterium sp. SKA34] gi|89048474|gb|EAR54049.1| hypothetical ribonuclease D [Photobacterium sp. SKA34] Length = 363 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 +AR A+ +DTE + RL ++QL G+ I I ++ L +L D+ Sbjct: 6 SARAHSAVMLDTEFVRTRTLYPRLGLIQLFDGEQLSLIDPIEV--EDMEPLWALLRDQSV 63 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H D+ V + G P+F T++ + + G +KE +G+ + K + Sbjct: 64 IKVLHACGEDLEVFQHHAGCLPTPMFDTQLMAAFL-GHGISTGFGALVKEYVGVELDKGE 122 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W A L+ +QL YAA+DV +L L K+++ G + C +M R Sbjct: 123 ARTNWLARPLTAKQLDYAAADVYYLKPLFETLLAKVEKRGYMEALQQECQSVMQR 177 >gi|119384625|ref|YP_915681.1| ribonuclease D [Paracoccus denitrificans PD1222] gi|119374392|gb|ABL69985.1| ribonuclease D [Paracoccus denitrificans PD1222] Length = 401 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 15/214 (7%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS---------PGDGTVDIIRI 56 ++ C A+ + +DTE L +LC++Q + G +V I + Sbjct: 18 TTAELAEFCELAKAEPYVTLDTEFLRERTYYSKLCLIQAALPPASATKAAGGLSVLIDPL 77 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 G P L + + K+FH R D+ + F+ GV P+F T+IA+ + + Q Sbjct: 78 VEGLSLEP-LYDLFRHKPTVKVFHAARQDLEIFFHDAGVMPDPLFDTQIAAMVC-GFGEQ 135 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G + +K++ + K+ + +DWS LSD Q YA +DV HL A+ + +L + GR Sbjct: 136 VGYETLVKKIARQPLDKSSRFTDWSHRPLSDAQAAYALADVTHLRAIYEFLSAQLDKTGR 195 Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207 + L++ WE V S S Sbjct: 196 APWLAEEVAVLLNPETYITRPEEAWERVRTRSGS 229 >gi|300717019|ref|YP_003741822.1| ribonuclease D [Erwinia billingiae Eb661] gi|299062855|emb|CAX59975.1| Ribonuclease D [Erwinia billingiae Eb661] Length = 373 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 4/192 (2%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + C AR A+A+DTE + L ++Q+ G+ I + Sbjct: 4 TMITTNEALAELCLTARQFPALALDTEFVRTRTYYPGLGLIQMYDGENIALIDPLP--IT 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +L+DEK K H G D+ V + + V P+ T+I + T G Sbjct: 62 EWAPFRDLLLDEKVIKFLHAGSEDLEVFLHEYDVLPVPMIDTQILAAFT-GRPLSCGFAT 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ GI + K++ +DW A L+++Q QYAA+DV +L + + + + GR + A Sbjct: 121 IVESFTGIALDKSESRTDWLARPLTEKQCQYAAADVFYLLPIAHKLLAEAEESGRINAAL 180 Query: 182 SCCNFLMDRAEL 193 + C+ L R ++ Sbjct: 181 NECSLLCQRRQM 192 >gi|167041251|gb|ABZ06007.1| putative 3'-5' exonuclease [uncultured marine microorganism HF4000_005D21] gi|167045755|gb|ABZ10401.1| putative 3'-5' exonuclease [uncultured marine bacterium HF4000_APKG3108] Length = 214 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 6/211 (2%) Query: 1 MTTIRVHEGDIPAECA--ARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIA 57 MT I + DI + ++A+DTE GL P RD+L +VQ S G+ I++ Sbjct: 5 MTKIYKFQDDISTDALKELEKHSSLAIDTEGSGLQIPHRDKLSLVQFSAGNNDAYIVQPN 64 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 APN+V +L + K KI HY R+D++ L Y V+ +F TKIAS+L RTY+ H Sbjct: 65 RKSYKAPNIVKILENAKITKIGHYLRYDVSGLEYFLKCNVKNIFDTKIASKLCRTYSQNH 124 Query: 118 GLKDNLKELLGINISKAQQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 GLKD E + K SSDW+ + +L+D QLQY ++DV++LH ++ + L R Sbjct: 125 GLKDLALEFCSKKLDKRLGSSDWNKNLYELTDAQLQYCSNDVIYLHKIKDALYKMLVREN 184 Query: 176 RSDLATSCCNFLMDRAELDLLGWENVDIFSH 206 R +L SC FL R +LD G+ DIF H Sbjct: 185 RLELYESCIQFLKTRIKLDQSGFAE-DIFQH 214 >gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626] gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626] Length = 376 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 3/187 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I E I A +V +AVDTE L +LC+VQ+S G+ I ++ + Sbjct: 3 ISTQEELISFCLRAAHVPVLAVDTEFLREKTYYPKLCLVQVSTGEEIAAIDPLS--IDDL 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 LV + D+K K+ H D+ VL Y PVF T++A+ Q + Sbjct: 61 SPLVRLFEDQKIVKVIHACSQDLEVLLYGMHCACAPVFDTQLAAAFLGMR-QQASYASVV 119 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + +G+++ K + +DWS L EQL YA DV +L + E+L + R Sbjct: 120 EHYMGVHLPKTESLTDWSRRPLDPEQLVYAEDDVRYLPDIYRCMYERLMKTNRLGWLMPE 179 Query: 184 CNFLMDR 190 N Sbjct: 180 MNAYTAP 186 >gi|153823321|ref|ZP_01975988.1| ribonuclease D [Vibrio cholerae B33] gi|126519155|gb|EAZ76378.1| ribonuclease D [Vibrio cholerae B33] Length = 246 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 4/184 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I GD+ C AAR D + +DTE + +L ++Q+ G+ I Sbjct: 5 IISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L D K+ H D+ V FG P+ T+I + Y G Sbjct: 63 MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ L + + K++ +DW A LSD+QL+YAA+DV +L + + E++ + G D A Sbjct: 122 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQ 181 Query: 183 CCNF 186 Sbjct: 182 ESEL 185 >gi|303253729|ref|ZP_07339866.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247590|ref|ZP_07529633.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647454|gb|EFL77673.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855860|gb|EFM88020.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 371 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 8/194 (4%) Query: 4 IRVHEGDIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 I H D + A A+A+DTE + +L ++QL GD I Sbjct: 5 IHYHWIDTDEKLKTVCENACRKSAVALDTEFIRTRSYYPKLGLIQLFDGDTVSLIDP--N 62 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + +G+L + K+ H D+ V + F P+ T+I + G Sbjct: 63 PISDFSPFIGLLTCQNVVKVLHACSEDLEVFQHLFKQLPTPLADTQIMAGFAGV-GISLG 121 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + L + + K +DW A L++EQLQYAA+DV +L + + L + Sbjct: 122 FAKLVAHYLNVELDKGASRTDWLARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQN 181 Query: 179 LATSCCNFLMDRAE 192 C +L+++ E Sbjct: 182 AVEQECQYLLNKRE 195 >gi|253688324|ref|YP_003017514.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754902|gb|ACT12978.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 374 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 4/181 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + + +L DE+ Sbjct: 19 ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLT--ITDWAPFQALLRDEQVT 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V FG P T+I + +G + + +G+ + K++ Sbjct: 77 KFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPL-SYGFAALVADYMGVTLDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 +DW A LS++Q YAA+DV +L + Q + G + A C L R + D+L Sbjct: 136 RTDWLARPLSEKQCDYAAADVFYLLPMAAQLVADTEAAGWMNAALDECLLLCQRKQ-DIL 194 Query: 197 G 197 Sbjct: 195 A 195 >gi|124023956|ref|YP_001018263.1| ribonuclease D [Prochlorococcus marinus str. MIT 9303] gi|123964242|gb|ABM78998.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9303] Length = 212 Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 3/177 (1%) Query: 2 TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 + V +GD+ ++ A RY AIAVDTE +GL+ RDRLC+VQ+ V +RI G Sbjct: 9 ASFVVFDGDLDSDWANRYLRASAIAVDTEAMGLIHGRDRLCLVQICDPADNVACVRIGLG 68 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q +AP L ++ EK+FH+ RFD+A L G+ V P+FCTK+ASRL RTY+ +HGL Sbjct: 69 QTSAPRLQKLMEATSVEKVFHFARFDVAALASGLGISVLPIFCTKVASRLARTYSPRHGL 128 Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 K+ + EL+G+ + K QSSDW ++LSD QL YAA+D +L R + L+R G Sbjct: 129 KEVVMELVGVELDKQAQSSDWGRVEELSDVQLAYAANDARYLLPARQRLEMMLRREG 185 >gi|330445493|ref|ZP_08309145.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489684|dbj|GAA03642.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 375 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 14/208 (6%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I + C A+ A+ +DTE + RL ++QL G+ I + Sbjct: 4 DIITTTEQLQQRCDSAKTQAAVMLDTEFVRTRTLYPRLGLIQLFDGEHLSLIDPLE--ID 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + L +L D+ K+ H D+ V + G P+ T++ + + G Sbjct: 62 DMEPLWALLRDQSVIKVLHACGEDLEVFQHHAGCLPTPMLDTQLMAAFL-GHGISTGFGA 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +KE +G+ + K + ++W A L+ +QL YAA+DV +L L K++ G + Sbjct: 121 LVKEYVGVELDKGEARTNWLARPLTAKQLDYAAADVHYLKPLYETLLAKVEATGYMEALQ 180 Query: 182 SCCNFL---------MDRAELDL-LGWE 199 CN + ++A LD+ W+ Sbjct: 181 QECNSVMLRRIKPVDPEKAYLDIKNAWQ 208 >gi|268589713|ref|ZP_06123934.1| ribonuclease D [Providencia rettgeri DSM 1131] gi|291314943|gb|EFE55396.1| ribonuclease D [Providencia rettgeri DSM 1131] Length = 373 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + ++ C A +A+DTE + +L ++QL G I + + Sbjct: 7 TTDSELAQVCQEASNAPWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPLL--MTDFS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L + ++ K H G D+ V + F P+ T++ + Y G + Sbjct: 65 PFKALLTNPEQLKFLHAGSEDLEVFMHDFDCVPEPMIDTQVVAAFL-GYPISCGFASLVA 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E LGI + K++ +DW A LS++Q YAA+DV++L L EK+ G + A C Sbjct: 124 EHLGIELDKSESRTDWLARPLSEKQCDYAAADVLYLLPLAEILMEKVTEAGYLEDAKDEC 183 Query: 185 NFLMDRAE 192 ++ R + Sbjct: 184 QRVVARRQ 191 >gi|242239440|ref|YP_002987621.1| ribonuclease D [Dickeya dadantii Ech703] gi|242131497|gb|ACS85799.1| ribonuclease D [Dickeya dadantii Ech703] Length = 403 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 5/198 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + C+ AR + +A+DTE + +L ++QL G+ I ++ Sbjct: 34 LITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLS--ITV 91 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L+D K H G D+ V FG+ P T+I +G Sbjct: 92 WQPFCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPL-SYGFAAL 150 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + + + + K++ +DW A LS++Q QYAA+DV +L + ++ E+ G + A Sbjct: 151 VADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWEAALD 210 Query: 183 CCNFLMDRAELDLLGWEN 200 C L R + D+L E Sbjct: 211 ECRQLCQRKQ-DVLAPEQ 227 >gi|307131134|ref|YP_003883150.1| ribonuclease D [Dickeya dadantii 3937] gi|306528663|gb|ADM98593.1| ribonuclease D [Dickeya dadantii 3937] Length = 373 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 5/190 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I EG + A CA A V +A+DTE + +L ++QL GD I +A ++ Sbjct: 6 ITTDEG-LSAVCAQACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLSLIDPLA--IRD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L + + K H G D+ V FG P T+I + +G Sbjct: 63 WAPFRALLQNPQVTKFLHAGSEDLEVFLNAFGGLPSPFIDTQILAAFLGKPL-SYGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + + + K++ +DW A LS++Q QYAA+DV +L + E+ + G + A Sbjct: 122 VADYRQVALDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARTLVEETRAAGWLEAALD 181 Query: 183 CCNFLMDRAE 192 C L R + Sbjct: 182 ECLLLCQRRQ 191 >gi|209694623|ref|YP_002262551.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238] gi|208008574|emb|CAQ78749.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238] Length = 374 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 4/181 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I H + C A + +DTE + RL ++Q+ G+ + + + Sbjct: 5 IVKHSQRLAEICQQASNKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVE--IDD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L +E K+ H D+ V + G P+ T+I + Y G Sbjct: 63 LTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + LG+++ K + +DW A LSD+QL YAA+DV +L L + +L + A Sbjct: 122 VSDYLGVDLDKGESRTDWMARPLSDKQLDYAAADVHYLLPLFEKLQAELAQTEWEKAAYQ 181 Query: 183 C 183 Sbjct: 182 E 182 >gi|323495020|ref|ZP_08100109.1| ribonuclease D [Vibrio brasiliensis LMG 20546] gi|323310677|gb|EGA63852.1| ribonuclease D [Vibrio brasiliensis LMG 20546] Length = 346 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 12/183 (6%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + +L ++QL G I + V +L D K+ H Sbjct: 1 MLDTEFVRTRTYYPQLGLIQLYDGQTLSLIDP--TVIDDMTAFVHLLQDTSVLKVLHACG 58 Query: 84 FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 D+ V +FG P+ T++ + + G + E L + + K++ +DW A Sbjct: 59 EDLEVFQNSFGCLPYPMVDTQLMAAFL-GHGLSTGFAALVNEYLNVELDKSESRTDWLAR 117 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---------MDRAELD 194 L+D+QL+YAA+DV +L L Q E + + G A + + +RA LD Sbjct: 118 PLTDKQLEYAAADVYYLLPLYEQLFENITQAGWWQAAQQESDLIASKRIKTVNPERAYLD 177 Query: 195 LLG 197 + G Sbjct: 178 VKG 180 >gi|212711905|ref|ZP_03320033.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM 30120] gi|212685427|gb|EEB44955.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM 30120] Length = 373 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + ++ C A +A+DTE + +L ++QL G I + + Sbjct: 7 TTDSELAKVCQEASDAPWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPLL--MTDFS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L + + K H G D+ V + FG P+ T++ + Y G + Sbjct: 65 PFKALLTNPNQLKFLHAGSEDLEVFMHDFGCVPEPMIDTQVLAAFL-GYPISCGFATLVA 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E LGI + K++ +DW A LS++Q YA +DV++L L EK+ G A C Sbjct: 124 EHLGIELDKSESRTDWLARPLSEKQCDYATADVLYLLPLAKILMEKVSEEGLLADAQDEC 183 Query: 185 NFLMDRAE 192 ++ R + Sbjct: 184 QRIVARRQ 191 >gi|227111497|ref|ZP_03825153.1| ribonuclease D [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 374 Score = 217 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 4/181 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + + +L DE+ Sbjct: 19 ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLT--ITDWAPFQALLRDEQVT 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V FG P T+I + +G + + +G+ + K++ Sbjct: 77 KFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPL-SYGFAALVADYMGVTLDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 +DW A LS++Q YAA+DV +L + +Q + G + A C L R + D+L Sbjct: 136 RTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWMNAALDECLLLCQRKQ-DIL 194 Query: 197 G 197 Sbjct: 195 A 195 >gi|238895380|ref|YP_002920115.1| ribonuclease D [Klebsiella pneumoniae NTUH-K2044] gi|238547697|dbj|BAH64048.1| ribonuclease D [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 375 Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + A C AA A+A+DTE + +L ++QL G I + + Sbjct: 7 TTDNGLRAVCEAASTASAVALDTEFVRTRTYYPQLGLLQLFDGQQVSLIDPLTIN--DWA 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + +L+++ K H G D+ V F + +P+ T+I + G ++ Sbjct: 65 PMRDLLLNQDVTKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFC-GRPMSWGFASMVE 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + Q + R G A C Sbjct: 124 EYSGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDEC 183 Query: 185 NFLMDRAE 192 + R + Sbjct: 184 RVMQQRRQ 191 >gi|269103055|ref|ZP_06155752.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761] gi|268162953|gb|EEZ41449.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761] Length = 382 Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 4/184 (2%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TI D+ C AA AI +DTE + +L ++QL G I +A + Sbjct: 4 TIITTTADLKMVCQAASSAPAIMLDTEFVRTRTLYPKLGLIQLFDGKQLSLIDPLA--IE 61 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + L +L D+ K+ H D+ V + G P+ T++ + + G Sbjct: 62 DMEPLWDLLRDQSVMKVLHACGEDLEVFQHHAGCLPVPMLDTQLMAAFL-GHGVSTGFGA 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +KE +G+ + K + ++W A L+D QL YAA+DV +L L EK+ G Sbjct: 121 LVKEYVGVELDKGEARTNWLARPLTDRQLNYAAADVFYLLPLYETLLEKVGAAGYCKALE 180 Query: 182 SCCN 185 CN Sbjct: 181 QECN 184 >gi|308187080|ref|YP_003931211.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1] gi|308057590|gb|ADO09762.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1] Length = 373 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 5/195 (2%) Query: 7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + C AR A+A+DTE + +L ++QL V I + ++ Sbjct: 8 QDEQLADVCQKARQHAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPL--NIRDWSP 65 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 + +L D K H G D+ V + FGV P+ T+I + + G + Sbjct: 66 FIALLTDTSVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFS-GQPLSWGFASMVAH 124 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + K++ +DW A L+ Q +YAA+DV +L + Q + G A S C+ Sbjct: 125 FTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGNMAAALSECD 184 Query: 186 FLMDRAELDLLGWEN 200 L R LD + + Sbjct: 185 NLCQR-RLDSVAPDE 198 >gi|50121299|ref|YP_050466.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043] gi|49611825|emb|CAG75274.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043] Length = 374 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 4/181 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + + +L DE+ Sbjct: 19 ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLT--ITDWAPFQALLRDEEVT 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V TFG P T+I + +G + + +G+++ K++ Sbjct: 77 KFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPL-SYGFAALVADYMGVSLDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 +DW A LS++Q YAA+DV +L + +Q + G + A C L R + D+L Sbjct: 136 RTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTETAGWMNAALDECLLLCQRKQ-DIL 194 Query: 197 G 197 Sbjct: 195 A 195 >gi|317491812|ref|ZP_07950247.1| ribonuclease D [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920246|gb|EFV41570.1| ribonuclease D [Enterobacteriaceae bacterium 9_2_54FAA] Length = 371 Score = 217 bits (553), Expect = 8e-55, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + D+ C A IA+DTE + +L ++QL G+ I + + Sbjct: 5 LITTSSDLKQVCEQASRHAYIALDTEFVRTRTYYPQLGLIQLFDGETLTLIDPLP--ITD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L + + K+ H D+ V + F P+ T+I + T G Sbjct: 63 WQPFVALLKNPEVTKLLHACSEDLEVFLHEFQTLPTPMIDTQILAAFT-GRALSCGFAAM 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + L + + K++ +DW A L++ Q +YAA+DV +L L + ++ G D A Sbjct: 122 VNDYLQVELDKSESRTDWLARPLTERQCEYAAADVFYLLPLADKLIAEVAEAGWLDAAKD 181 Query: 183 CCNFLMDRAE 192 C L R + Sbjct: 182 DCLSLCRRRQ 191 >gi|59712314|ref|YP_205090.1| ribonuclease D [Vibrio fischeri ES114] gi|59480415|gb|AAW86202.1| ribonuclease D [Vibrio fischeri ES114] Length = 373 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + C A + +DTE + RL ++Q+ G+ + + + Sbjct: 5 IVTQSQRLAEICQQASTKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVE--IDD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L +E K+ H D+ V + G P+ T+I + Y G Sbjct: 63 LTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + LGI + K + +DW A LSD+QL YAA+DV +L L + +L + D A Sbjct: 122 VSDYLGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAYQ 181 Query: 183 CCNFLMDRAE 192 + + E Sbjct: 182 ESALAVKKRE 191 >gi|295095587|emb|CBK84677.1| ribonuclease D [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 384 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 ++ + C R AIA+DTE + +L ++Q+ G I + G + Sbjct: 16 TTNDELASLCEVTREFPAIALDTEFVRTRTYYPQLGLIQMYDGKHVSLIDPL--GITDWA 73 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + +L+D K H G D+ V TFG+ +P+ T+I + + G ++ Sbjct: 74 PMRELLLDTAVTKYLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFS-GRPLSWGFAAMVE 132 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L+ QL+YAA+DV +L + Q ++ + G A C Sbjct: 133 EYTGLTLDKSESRTDWLARPLTARQLEYAAADVFYLLPIAGQLMKEAEASGWLSAALDEC 192 Query: 185 NFLMDRAE 192 R + Sbjct: 193 RMTQQRRQ 200 >gi|332185190|ref|ZP_08386939.1| ribonuclease D [Sphingomonas sp. S17] gi|332014914|gb|EGI56970.1| ribonuclease D [Sphingomonas sp. S17] Length = 392 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 6/196 (3%) Query: 13 AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A AR D I VDTE + LC++Q++ I A G P L ++ Sbjct: 14 ANLCARLSQADFITVDTEFMRESTYWPELCLIQIADTQEAAAIDPKAPGLDMTPLLDLLV 73 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 +++ K+FH G DI +++ G P+F T+IA+ + Q G + + LGI Sbjct: 74 NNDEVLKVFHAGGQDIEIIYNLTGKTPHPLFDTQIAA-MALGQGEQIGYSNLVDSWLGIQ 132 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + K + +DWS L Q+ YA DV HL + + E+L++ GR L D Sbjct: 133 VDKGARFTDWSRRPLDQRQVDYAIGDVTHLSDIFPRMLERLRKTGRGAWLDQEMERLADP 192 Query: 191 AEL---DLLGWENVDI 203 W+ V + Sbjct: 193 EHYANDPNSAWKRVRV 208 >gi|197335934|ref|YP_002156528.1| ribonuclease D [Vibrio fischeri MJ11] gi|197317424|gb|ACH66871.1| ribonuclease D [Vibrio fischeri MJ11] Length = 373 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 4/181 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + C A + +DTE + RL ++Q+ G+ + + + Sbjct: 5 IVTQSQRLAEICQQASTKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVE--IDD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L +E K+ H D+ V + G P+ T+I + Y G Sbjct: 63 LTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + LGI + K + +DW A LSD+QL YAA+DV +L L + +L + D A Sbjct: 122 VSDYLGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAYQ 181 Query: 183 C 183 Sbjct: 182 E 182 >gi|156933634|ref|YP_001437550.1| ribonuclease D [Cronobacter sakazakii ATCC BAA-894] gi|156531888|gb|ABU76714.1| hypothetical protein ESA_01456 [Cronobacter sakazakii ATCC BAA-894] Length = 369 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 5/188 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I ++ + C AR A+A+DTE + +L ++QL G+ I + + Sbjct: 2 ITTNDA-LATLCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLT--ITD 58 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L D+ K H G D+ V F + P T++ + + G Sbjct: 59 WAPFQALLQDQNVTKFLHAGSEDLEVFQNAFSMMPDPFIDTQVLASFV-GHPLSCGFATL 117 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ G+ + K++ +DW A L++ Q YAA+DV +L + + E+++ G A + Sbjct: 118 VEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAIN 177 Query: 183 CCNFLMDR 190 C + R Sbjct: 178 ECRLMTQR 185 >gi|304396155|ref|ZP_07378037.1| ribonuclease D [Pantoea sp. aB] gi|304356524|gb|EFM20889.1| ribonuclease D [Pantoea sp. aB] Length = 373 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 10/207 (4%) Query: 1 MTTIRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M + + D A+ AR A+A+DTE + +L ++QL V I + Sbjct: 1 MNYSLIDQNDQLADVCQKARQQAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPL-- 58 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 ++ + +L D + K H G D+ V + FGV P+ T+I + + G Sbjct: 59 NIRDWSPFIALLTDTRVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFS-GQPLSWG 117 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + + + K++ +DW A L+ Q +YAA+DV +L + Q + G Sbjct: 118 FASMVAHFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGNMA 177 Query: 179 LATSCCNFLMDRAELDLL----GWENV 201 A S C+ L R LD L W ++ Sbjct: 178 AALSECDNLCQR-RLDSLSPDEAWRDI 203 >gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989] gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989] Length = 383 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 4/181 (2%) Query: 11 IPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + C + AIA+DTE + + ++Q++ +G I +A + + + Sbjct: 27 LADLCQSLSTQSAIALDTEFVRTRTYYPHIGLLQIADENGVYLIDPLAIS--DTQPMADV 84 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L + K+ H D+ V Y FGV +F T++A+ Y + G + L+E+ I Sbjct: 85 LQNPAIVKVVHACSEDLEVFQYAFGVLPESLFDTQVAAGFA-GYGSSIGYANLLREIKRI 143 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +I K + SDW LSD QL+YAA DV +L + EKLQ+ R + C +++ Sbjct: 144 DIPKQETRSDWLQRPLSDAQLRYAALDVEYLLEIYRGLVEKLQQQQRLLWVEADCQRMIE 203 Query: 190 R 190 + Sbjct: 204 K 204 >gi|296101862|ref|YP_003612008.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056321|gb|ADF61059.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 384 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 ++ + C R AIA+DTE + +L ++Q+ G I + G + Sbjct: 16 TTNDELASLCEVTRDFPAIALDTEFVRTRTYYPQLGLIQMYDGKHVSLIDPL--GITDWT 73 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + +L+D K H G D+ V TFG+ +P+ T+I + + G ++ Sbjct: 74 PMRDLLLDTAVTKYLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFSN-RPLSWGFAAMVE 132 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ QL YAA+DV +L + Q ++ + G A C Sbjct: 133 EYTGLTLDKSESRTDWLARPLTERQLDYAAADVFYLLPIAGQLMKEAEASGWLPAALDEC 192 Query: 185 NFLMDRAE 192 R + Sbjct: 193 RMTQQRRQ 200 >gi|33152538|ref|NP_873891.1| ribonuclease D [Haemophilus ducreyi 35000HP] gi|33148762|gb|AAP96280.1| ribonuclease D [Haemophilus ducreyi 35000HP] Length = 373 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 3/169 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 AIA+DTE + + ++QL G+ T I + +L + K+ H Sbjct: 28 AIALDTEFIRTRSYYPKFGLIQLFDGEQTSLIDPTTISDFL--PFIDLLANPNIVKVLHA 85 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ + + F + P+ T+I + + G + L I + K +DW Sbjct: 86 CSEDLEIFQHQFNQALTPLIDTQIMAAFS-GLGLSIGFAKLVNHYLNIELDKGASRTDWL 144 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 A L++ QLQYAA+DV +L + + +L + + C L+++ Sbjct: 145 ARPLTETQLQYAAADVYYLLPIYQKLQAELAQTNWQEAVNQECQLLVNK 193 >gi|114797633|ref|YP_760953.1| ribonuclease D [Hyphomonas neptunium ATCC 15444] gi|114737807|gb|ABI75932.1| ribonuclease D [Hyphomonas neptunium ATCC 15444] Length = 388 Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 6/206 (2%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T + + C A D + VDTE LC++Q S I A Sbjct: 7 TPITEQSALEDLCGALSESDFVCVDTEFHRETTYWPELCLIQASAPGVEGLIDPRAEDLD 66 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 P L ++ +++ K+FH R DI + G P+F T++A+ + + + + Sbjct: 67 IRPFL-DLIASDRQLKVFHAARQDIEIFNRLIGHPPGPIFDTQVAA-MALGFGDSISYDN 124 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ +L +I K+ Q +DW LS +QL YA DV HL L+ ++L++ GR + Sbjct: 125 LIQRVLRKHIDKSSQFTDWMRRPLSQKQLVYALGDVTHLRDAYLKMRDELEKAGRMNWVR 184 Query: 182 SCCNFLMDRAELD---LLGWENVDIF 204 L D A D + W+ + + Sbjct: 185 EEMAELEDPATYDTDPMNAWQRLKLR 210 >gi|238762951|ref|ZP_04623918.1| Ribonuclease D [Yersinia kristensenii ATCC 33638] gi|238698709|gb|EEP91459.1| Ribonuclease D [Yersinia kristensenii ATCC 33638] Length = 373 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + Q +L D Sbjct: 19 ARTYAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQ--WQPFRELLQDLNVV 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F + P+ T++ + + T G + E G+ + K++ Sbjct: 77 KYLHAGSEDLEVFLNAFDIMPTPMIDTQVLAAFS-GRTLSCGFAMLVNEFEGVELDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDECELLCRR 189 >gi|322514433|ref|ZP_08067476.1| ribonuclease D [Actinobacillus ureae ATCC 25976] gi|322119681|gb|EFX91739.1| ribonuclease D [Actinobacillus ureae ATCC 25976] Length = 371 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 4/183 (2%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + C A A+ +DTE + + +L ++QL G+ V +I AP + + Sbjct: 16 LAEVCQNASQKPAVTLDTEFIRIRTYYPKLGLIQLFDGE-QVSLIDPTKIDDFAP-FIEL 73 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L +++ K+ H D+ V + F P+ T+I + G + L I Sbjct: 74 LANQQVVKVLHACGEDLEVFQHRFKQLPTPLVDTQIMADFA-GIGVSMGFAKLVAHYLQI 132 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K +DW A LS+EQLQYAA+DV +L + + L + C L++ Sbjct: 133 ELDKGASRTDWLARPLSEEQLQYAAADVWYLLPVYQRLVVDLDVTRWQNAVEEECQTLLE 192 Query: 190 RAE 192 + + Sbjct: 193 KRQ 195 >gi|262041917|ref|ZP_06015100.1| ribonuclease D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040723|gb|EEW41811.1| ribonuclease D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 371 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + A C AA A+A+DTE + +L ++QL G I + + Sbjct: 3 TTDDGLRAVCEAASTASAVALDTEFVRTRTYYPQLGLLQLFDGQQVSLIDPLTIN--DWA 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + +L+++ K H G D+ V F + +P+ T+I + G ++ Sbjct: 61 PMRDLLLNQDVTKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + Q + R G A C Sbjct: 120 EYSGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RVMQQRRQ 187 >gi|330000265|ref|ZP_08303673.1| ribonuclease D [Klebsiella sp. MS 92-3] gi|328538027|gb|EGF64198.1| ribonuclease D [Klebsiella sp. MS 92-3] Length = 372 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + A C AA A+A+DTE + +L ++QL G I + + Sbjct: 4 TTDDGLRAVCEAASTASAVALDTEFVRTRTYYPQLGLLQLFDGQQVSLIDPLTIN--DWA 61 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + +L+++ K H G D+ V F + +P+ T+I + G ++ Sbjct: 62 PMRDLLLNQDVTKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFC-GRPMSWGFASMVE 120 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + Q + R G A C Sbjct: 121 EYSGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDEC 180 Query: 185 NFLMDRAE 192 + R + Sbjct: 181 RVMQQRRQ 188 >gi|152970868|ref|YP_001335977.1| ribonuclease D [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955717|gb|ABR77747.1| RNase D, processes tRNA precursor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 371 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + A C AA A+A+DTE + +L ++QL G I + + Sbjct: 3 TTDDGLRAVCEAASTASAVALDTEFVRTRTYYPQLGLLQLFDGQQVSLIDPLTIN--DWA 60 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + +L+++ K H G D+ V F + +P+ T+I + G ++ Sbjct: 61 PMRDLLLNQDVTKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFC-GRPMSWGFASMVE 119 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L++ Q +YAA+DV +L + Q + R G A C Sbjct: 120 EYSGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDEC 179 Query: 185 NFLMDRAE 192 + R + Sbjct: 180 RVMQQRRQ 187 >gi|227327782|ref|ZP_03831806.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 374 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 4/181 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + + +L DE+ Sbjct: 19 ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLT--ITDWAPFQALLRDEQVT 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F P T+I + +G + + +G+ + K++ Sbjct: 77 KFLHAGSEDLEVFLNAFETLPTPFIDTQILAAFLGKPL-SYGFAALVADYMGVTLDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 +DW A LS++Q YAA+DV +L + +Q + G + A C L R + D+L Sbjct: 136 RTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWMNAALDECLLLCQRKQ-DIL 194 Query: 197 G 197 Sbjct: 195 A 195 >gi|322832720|ref|YP_004212747.1| ribonuclease D [Rahnella sp. Y9602] gi|321167921|gb|ADW73620.1| ribonuclease D [Rahnella sp. Y9602] Length = 373 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 3/178 (1%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 A+ IA+DTE + +L ++QL G+ I + + +LVD Sbjct: 17 LQAKAHSKIALDTEFVRTRTYYPQLGLIQLFDGERLTLIDPLP--ITAWQPFIDLLVDPD 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K H G D+ V FGV P+ T+I + + G + E G+ + K+ Sbjct: 75 VIKFLHAGSEDLEVFLNAFGVMPSPLIDTQILAAFS-GRPLSCGFARLVAETTGVELDKS 133 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 + +DW A LS++Q YAA+DV +L L Q + Q G D A C L R + Sbjct: 134 ESRTDWIARPLSEKQCVYAAADVWYLLPLADQLMRETQDAGWMDAALDECLALCRRRK 191 >gi|261821503|ref|YP_003259609.1| ribonuclease D [Pectobacterium wasabiae WPP163] gi|261605516|gb|ACX88002.1| ribonuclease D [Pectobacterium wasabiae WPP163] Length = 374 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 4/181 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ +A+DTE + +L ++QL G+ I + + +L DE+ Sbjct: 19 AQRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLT--ITDWAPFQALLRDEQVT 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V TFG P T+I + +G + + +G+ + K++ Sbjct: 77 KFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPL-SYGFAALVADYMGVTLDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 +DW A LS++Q YAA+DV +L + +Q + G + A C L R + D+L Sbjct: 136 RTDWLARPLSEKQCDYAAADVFYLLPMAIQLVTDTEAAGWMNAALDECLLLCQRKQ-DIL 194 Query: 197 G 197 Sbjct: 195 A 195 >gi|183599025|ref|ZP_02960518.1| hypothetical protein PROSTU_02469 [Providencia stuartii ATCC 25827] gi|188021240|gb|EDU59280.1| hypothetical protein PROSTU_02469 [Providencia stuartii ATCC 25827] Length = 374 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + ++ C A D +A+DTE + +L ++QL G I ++ + Sbjct: 7 TTDSELAQVCQQASEADWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPLSIS--DFS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L ++ K H G D+ V + F P+ T++ + Y G + Sbjct: 65 PFKALLTNKSLTKFLHAGSEDLEVFLHDFECVPEPMVDTQVIAAFL-GYPISCGFASLVS 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E LGI + K++ +DW A LS++Q QYA +DV++L L +K++ G A C Sbjct: 124 EYLGIELDKSESRTDWLARPLSEKQCQYATADVLYLLPLAKILMQKVEESGYLSAALEEC 183 Query: 185 NFLMDRAE 192 ++R + Sbjct: 184 QRTVERRQ 191 >gi|260580546|ref|ZP_05848374.1| ribonuclease D [Haemophilus influenzae RdAW] gi|260092888|gb|EEW76823.1| ribonuclease D [Haemophilus influenzae RdAW] Length = 399 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + V +L + K Sbjct: 45 LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLIDPLA--ITDFSPFVALLANPKV 102 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L + I K Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 161 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C ++ + Sbjct: 162 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 216 >gi|261343835|ref|ZP_05971480.1| ribonuclease D [Providencia rustigianii DSM 4541] gi|282568219|gb|EFB73754.1| ribonuclease D [Providencia rustigianii DSM 4541] Length = 373 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + ++ C A +A+DTE + +L ++QL G+ I + + Sbjct: 7 TTDSELAQVCQEASDAPWLALDTEFVRTRTYYPQLGLLQLYDGNQVSLIDPLL--MTDFS 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L + + K H G D+ V + FG P+ T+I + Y G + Sbjct: 65 PFKALLTNPNQLKFLHAGSEDLEVFIHDFGCVPEPMIDTQIVAAFL-GYPISCGFATLVV 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E LGI + K++ +DW A LS +Q YA +DV++L L EK+ G D A C Sbjct: 124 EHLGIELDKSESRTDWLARPLSAKQCDYATADVLYLLPLAKILMEKVTEAGYLDDAKDEC 183 Query: 185 NFLMDRAE 192 ++ R + Sbjct: 184 QRVVARRQ 191 >gi|16272339|ref|NP_438552.1| ribonuclease D [Haemophilus influenzae Rd KW20] gi|1173094|sp|P44442|RND_HAEIN RecName: Full=Ribonuclease D; Short=RNase D gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd KW20] Length = 399 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + V +L + K Sbjct: 45 LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLIDPLA--ITDFSPFVALLANPKV 102 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L + I K Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 161 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C ++ + Sbjct: 162 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 216 >gi|226329911|ref|ZP_03805429.1| hypothetical protein PROPEN_03824 [Proteus penneri ATCC 35198] gi|225200706|gb|EEG83060.1| hypothetical protein PROPEN_03824 [Proteus penneri ATCC 35198] Length = 372 Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + C AA IA+DTE + + L ++Q+ G I +A K+ Sbjct: 5 LITTDTALDTACKAASEASQIALDTEFVRIRTYYPHLGLIQMYDGKQISLIDPLA--IKD 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L ++ K H G D+ V + FG P+ T++ + + G Sbjct: 63 WTPFVELLTNQGIMKFLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GHPISCGFATL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ + + K++ +DW A L+++Q QYA+ DV +L L + ++ + G D Sbjct: 122 VEKYENVALDKSESRTDWLARPLTEKQCQYASGDVFYLLPLAEKLIKEAEEAGYMDAIAD 181 Query: 183 CCNFLMDRAE 192 C + +R + Sbjct: 182 ECEMIAERRQ 191 >gi|238796317|ref|ZP_04639826.1| Ribonuclease D [Yersinia mollaretii ATCC 43969] gi|238719762|gb|EEQ11569.1| Ribonuclease D [Yersinia mollaretii ATCC 43969] Length = 395 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 3/187 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I ++G AR +A+DTE + +L ++QL G+ I + Sbjct: 28 ITTNDGLQQVCEQARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEW 85 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 +L D K H G D+ V F P+ T++ + + + G + Sbjct: 86 QPFRELLQDLNVVKYLHAGSEDLEVFLNAFDRMPTPMIDTQVLAAFS-GRSLSCGFAMLV 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 E G+ + K++ +DW A LS++Q YAA+DV +L L + E + GR D A Sbjct: 145 NEFEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDE 204 Query: 184 CNFLMDR 190 C L R Sbjct: 205 CELLCRR 211 >gi|288549752|ref|ZP_05968046.2| ribonuclease D [Enterobacter cancerogenus ATCC 35316] gi|288317705|gb|EFC56643.1| ribonuclease D [Enterobacter cancerogenus ATCC 35316] Length = 384 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 ++ + C R AIA+DTE + +L ++Q+ G I + G + Sbjct: 16 TTNDELASLCEVTRDFPAIALDTEFVRTRTYYPQLGLIQMYDGKRVSLIDPL--GITDWT 73 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + +L+D K H G D+ V TFG+ +P+ T+I + + G ++ Sbjct: 74 PMRDLLLDTAVTKYLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFSN-RPLSWGFAAMVE 132 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E G+ + K++ +DW A L+ QL+YAA+DV +L + Q ++ + G A C Sbjct: 133 EYTGLTLDKSESRTDWLARPLTARQLEYAAADVFYLLPIAGQLMKESEASGWLSAALDEC 192 Query: 185 NFLMDRAE 192 R + Sbjct: 193 RMAQQRRQ 200 >gi|294635861|ref|ZP_06714315.1| ribonuclease D [Edwardsiella tarda ATCC 23685] gi|291090794|gb|EFE23355.1| ribonuclease D [Edwardsiella tarda ATCC 23685] Length = 376 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A +A+DTE + +L +VQL G+ I + + V +L + + Sbjct: 24 ASAFPYVALDTEFVRTRTYYPQLGLVQLYDGETLSLIDPLPIS--DWQPFVDLLRNPQVV 81 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H G D+ V + F +P+ T+I + T + G + LG+ + K++ Sbjct: 82 KLLHAGSEDLEVFLHDFQTLPQPLIDTQILAAFTGRPLSS-GFAAMVNAYLGVELDKSES 140 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS+ Q YAA+DV +L + Q +++ G A C L R Sbjct: 141 RTDWLARPLSERQCDYAAADVYYLLPMAHQLLAEVEGCGWLPAALDECQALCRR 194 >gi|269138811|ref|YP_003295512.1| ribonuclease D [Edwardsiella tarda EIB202] gi|267984472|gb|ACY84301.1| ribonuclease D [Edwardsiella tarda EIB202] gi|304558803|gb|ADM41467.1| Ribonuclease D [Edwardsiella tarda FL6-60] Length = 371 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A IA+DTE + +L +VQL G+ I + + V +L + + Sbjct: 20 ASACPYIALDTEFVRTRTYYPQLGLVQLYDGETLSLIDPLPIS--DWQPFVDLLRNPQVV 77 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H G D+ V + F +P+ T+I + T + G + L +++ K++ Sbjct: 78 KLLHAGSEDLEVFLHDFQTLPQPLIDTQILAAFTGRPLSS-GFAAMVSAYLQVDLDKSES 136 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS+ Q YAA+DV +L + + +++ G A C L R Sbjct: 137 RTDWLARPLSERQCDYAAADVYYLLPMAHKLLAEVEACGWLPAALDECQALCRR 190 >gi|332702439|ref|ZP_08422527.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay] gi|332552588|gb|EGJ49632.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay] Length = 409 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 3/178 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R DA+ +DTE + L ++QL G + + G + LV +L D + Sbjct: 42 LRGCDAVGMDTEFVRSRTYFPTLGLIQLVADGGVFLVDPL--GVDDLSPLVEILADPRLI 99 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KIFH + D+ L+Y G PVF T++A+ Y Q G +K L G+ + K + Sbjct: 100 KIFHSCQEDLEALYYLCGFAPGPVFDTQVAASFL-GYGFQPGYGSLVKALFGVELDKDET 158 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 S+W LS+ QL YAA DV +L A+ + L GR A C L A + Sbjct: 159 RSNWIKRPLSESQLIYAAQDVRYLPAMYSILGQALTEQGRLSWAREECAALEGEARFE 216 >gi|332161539|ref|YP_004298116.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605521|emb|CBY27019.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica Y11] gi|325665769|gb|ADZ42413.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 373 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + Q +L D Sbjct: 19 ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEKLSLIDPLPITQ--WQPFRELLQDVSVV 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F + P+ T++ + + + G + EL G+ + K++ Sbjct: 77 KYLHAGSEDLEVFLNAFELMPTPMIDTQVLAAFS-GRSLSCGFAMLVNELEGVELDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLASKLVEATEAAGRMDAAKDECELLCRR 189 >gi|123442616|ref|YP_001006593.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089577|emb|CAL12426.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 373 Score = 214 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + Q +L D Sbjct: 19 ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQ--WQPFRELLQDLNVV 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F + P+ T++ + + + G + E G+ + K++ Sbjct: 77 KYLHAGSEDLEVFLNAFELMPTPMIDTQVLAAFS-GRSLSCGFAMLVNEFEGVELDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDECELLCRR 189 >gi|238782530|ref|ZP_04626561.1| Ribonuclease D [Yersinia bercovieri ATCC 43970] gi|238716457|gb|EEQ08438.1| Ribonuclease D [Yersinia bercovieri ATCC 43970] Length = 395 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + +L D Sbjct: 41 ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFRELLQDLAVV 98 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F P+ T++ + + + G + E G+ + K++ Sbjct: 99 KYLHAGSEDLEVFLNAFDRMPTPMIDTQVLAAFS-GRSLSCGFAMLVNEFEGVELDKSES 157 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 158 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECQLLCRR 211 >gi|300723126|ref|YP_003712424.1| RNase D, processes tRNA [Xenorhabdus nematophila ATCC 19061] gi|297629641|emb|CBJ90244.1| RNase D, processes tRNA precursor [Xenorhabdus nematophila ATCC 19061] Length = 379 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 4/188 (2%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + C A+ IA+DTE + +L ++QL G+ I + Q Sbjct: 10 TTDAQLQSVCEQAKKHARIALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLEISQ--WQ 67 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +LVD K+ H G D+ V +F P+ T++ + + G + Sbjct: 68 PLKALLVDPDVLKLIHAGSEDLEVFGNSFQCLPTPMIDTQVLAAFI-GHPISCGFATLVA 126 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 E L + + K++ +DW A LS +Q +YAA+DV +L L +K ++ G D A Sbjct: 127 EYLHVELDKSESRTDWLARPLSRKQCEYAAADVYYLLPLADILLKKTEQAGYFDAAKDES 186 Query: 185 NFLMDRAE 192 + + R + Sbjct: 187 DLIAQRRK 194 >gi|148552971|ref|YP_001260553.1| ribonuclease D [Sphingomonas wittichii RW1] gi|148498161|gb|ABQ66415.1| ribonuclease D [Sphingomonas wittichii RW1] Length = 395 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 4/192 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + VDTE + LC++Q++ + I A P L ++ +E+ Sbjct: 24 LAASPYVVVDTEFMRESTYWPDLCLIQIANSEEAAAIDPKAKDIDLTPLLDLLVENEEVL 83 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH G D+ ++ G P+F T++A+ + Q G + ++ +LGI + K + Sbjct: 84 KVFHAGGQDLEIVHNLTGKTPYPLFDTQVAA-MAMGLGEQIGYSNLVETMLGIKLDKGAR 142 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE---L 193 +DW+ L Q+ YA DV HL A+ + E+L++ GR + L D A L Sbjct: 143 FTDWARRPLDKRQIDYAIGDVTHLSAIFPRMLERLRKSGRGGWLDNEMERLGDPASYANL 202 Query: 194 DLLGWENVDIFS 205 L W + + S Sbjct: 203 PELAWTRIRLPS 214 >gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7] gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7] Length = 396 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 9/197 (4%) Query: 11 IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + A C IA+DTE + RLC+VQ++ D I IA + L + Sbjct: 23 LAAFCGEIAGAQWIALDTEFVREKTYYPRLCLVQVATPDALACIDPIA--LPDLGPLAAL 80 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+ H D+ +L + G PVF T++A L + +Q G ++ L + Sbjct: 81 LHDPAVTKVVHAAHQDMEILLQSTGRVPTPVFDTQVAVSLL-GHGDQIGYARMVQIYLDL 139 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K +DWS L QL+YAA DV HL + + L+ GR D + + + Sbjct: 140 ELDKGHTRTDWSQRPLETAQLRYAADDVRHLARVYPMILKDLEEKGRLDWLSEDFAAISE 199 Query: 190 RAEL----DLLGWENVD 202 + D W + Sbjct: 200 ESRYLPDPD-NAWRRIK 215 >gi|332992448|gb|AEF02503.1| ribonuclease D [Alteromonas sp. SN2] Length = 385 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 3/177 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + L ++QL G V I +A + + ++ + + Sbjct: 18 LAQQQKAVALDTEFVRTRTLSPHLGLIQLYDGHQLVLIDPLA--IDDLSPFIALMENTRV 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H D+ F PVF ++ A+ + G ++ L +++ K + Sbjct: 76 VKVLHSCSEDLETFLTAFNTVPTPVFDSQFAASIL-GLGASLGYAKLVELLCDVSLDKGE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A L + QL YAA+DV++L EK+ G+ + L D+ Sbjct: 135 SRTDWIARPLREAQLSYAANDVLYLLPCYEHLVEKINEAGKLEWVYQEIAQLADKKR 191 >gi|253989912|ref|YP_003041268.1| ribonuclease D [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638250|emb|CAR66874.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781362|emb|CAQ84524.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica] Length = 375 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 4/194 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + C A+ IA+DTE + +L ++QL G+ I + N Sbjct: 5 LITTDAQLQQVCERAKEYAKIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPL--NITN 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 ++ + + K H G D+ V F P+ T++ + + G Sbjct: 63 WQPFRELITNPQILKFLHAGSEDLEVFLNAFQCLPEPMIDTQVLAAFI-GHPLSCGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + E + + + K++ +DW A LS++Q +YAA+DV +L L + G + A Sbjct: 122 VAEYIHVELDKSESRTDWLARPLSEKQCEYAAADVYYLLPLADILITATTQAGYMEAAIG 181 Query: 183 CCNFLMDRAELDLL 196 C + R L Sbjct: 182 ECELISQRRREILA 195 >gi|238794476|ref|ZP_04638085.1| Ribonuclease D [Yersinia intermedia ATCC 29909] gi|238726159|gb|EEQ17704.1| Ribonuclease D [Yersinia intermedia ATCC 29909] Length = 373 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + +L D Sbjct: 19 ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFSELLQDLNVV 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F P+ T+I + + T G + E G+ + K++ Sbjct: 77 KYLHAGSEDLEVFLNAFSRMPTPMIDTQILAAFS-GRTLSCGFAMLVNEFEGVELDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECQLLCRR 189 >gi|293395838|ref|ZP_06640120.1| ribonuclease D [Serratia odorifera DSM 4582] gi|291421775|gb|EFE95022.1| ribonuclease D [Serratia odorifera DSM 4582] Length = 373 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 4/189 (2%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + + C AR IA+DTE + +L ++QL G+ I + Q Sbjct: 4 TLITTDAGLQQVCEQARKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQ- 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 V +L D K H G D+ V F P+ T+I + T G Sbjct: 63 -WQPFVDLLADSAVVKFLHAGSEDLEVFLNAFNTLPTPLVDTQILAAFTGKPL-SCGFAT 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + + + + + K++ +DW A L++ Q YAA+DV +L + Q ++ ++ G + A+ Sbjct: 121 LVAQYMQVELDKSESRTDWLARPLTERQCVYAAADVFYLLPMARQLVQETEQAGWTAAAS 180 Query: 182 SCCNFLMDR 190 S C L R Sbjct: 181 SECLLLCQR 189 >gi|312882473|ref|ZP_07742214.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122] gi|309369873|gb|EFP97384.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122] Length = 346 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 12/183 (6%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + +L ++QL G I + + +L D K+ H Sbjct: 1 MLDTEFVRTRTYHPQLGLIQLYDGQNLSLIDP--KVIDDMSPFIDLLKDPSVLKVLHACG 58 Query: 84 FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 D+ V +FG P+ T++ + + G +++ L + + K++ +DW A Sbjct: 59 EDLEVFHNSFGCLPHPMVDTQLMAAFL-GHGLSTGFAALVEQYLEVELDKSESRTDWLAR 117 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---------MDRAELD 194 L+ +QL YAA+DV +L L EK++++G A L D A LD Sbjct: 118 PLTQKQLDYAAADVFYLKPLFSLLLEKIEQVGWWKAAQQESELLAVKRIKTIEPDLAYLD 177 Query: 195 LLG 197 + G Sbjct: 178 IKG 180 >gi|145638698|ref|ZP_01794307.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII] gi|145272293|gb|EDK12201.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII] gi|309750190|gb|ADO80174.1| Ribonuclease D [Haemophilus influenzae R2866] Length = 380 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + + +L + K Sbjct: 26 LAQQQSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLIDPLA--ITDFSPFIALLANPKV 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H D+ V F RP+ T+I +R GL ++ L + I K Sbjct: 84 LKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LS+ QLQYAA DV +L L ++L + C ++ + Sbjct: 143 TRTNWIKRPLSNIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197 >gi|301169093|emb|CBW28690.1| ribonuclease D [Haemophilus influenzae 10810] Length = 382 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + V +L + K Sbjct: 26 LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLSNPKV 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H D+ V F RP+ T+I +R GL ++ L + I K Sbjct: 84 LKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C ++ + Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197 >gi|119775068|ref|YP_927808.1| ribonuclease D [Shewanella amazonensis SB2B] gi|119767568|gb|ABM00139.1| ribonuclease D [Shewanella amazonensis SB2B] Length = 371 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE + +L ++Q+ G+ I + ++ +L + K+ H Sbjct: 26 LVLDTEFVRTRTYYAKLGLIQVYDGNTLALIDPL--DIQDLSGFWALLTNPNILKLVHSC 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V V+ P+F ++IA+ L+ + G ++E LG + K + +DW Sbjct: 84 SEDLEVFARYGKVQPTPLFDSQIAAALS-GMGHGLGYAKLVEECLGQTLDKGESRTDWIK 142 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 L+D QLQYAA+DV +L+ L Q +KL+ LGR D L + Sbjct: 143 RPLTDAQLQYAANDVFYLYQLYPQLEQKLKTLGRFDWVLEEGARLTE 189 >gi|332307210|ref|YP_004435061.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174539|gb|AEE23793.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5] Length = 391 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 5/189 (2%) Query: 1 MTTIRVHEGD-IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 M I + + + A CA +AIAVDTE + +L ++Q+ G I + Sbjct: 1 MQYISITTNETLNAYCAQLAKAEAIAVDTEFVRTRTLYPKLGLIQIYDGQQIALIDPLEI 60 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + L +L DE K+ H DI + +P+F ++ A+ + G Sbjct: 61 S--DFSALKAILTDENIVKVLHSCSEDIETFICALDIVPKPIFDSQFAAAIVGMGA-SLG 117 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 ++ +L I + K + +DW A LS EQ +YAA DV++L+ L +K + GR Sbjct: 118 YAKLVEVMLDIQVDKGESRTDWLARPLSPEQCRYAAYDVLYLYQLYPTLRDKARAQGRQA 177 Query: 179 LATSCCNFL 187 + + L Sbjct: 178 WVFAEMDNL 186 >gi|22126121|ref|NP_669544.1| ribonuclease D [Yersinia pestis KIM 10] gi|45441720|ref|NP_993259.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001] gi|108807454|ref|YP_651370.1| ribonuclease D [Yersinia pestis Antiqua] gi|108811715|ref|YP_647482.1| ribonuclease D [Yersinia pestis Nepal516] gi|145598343|ref|YP_001162419.1| ribonuclease D [Yersinia pestis Pestoides F] gi|167469552|ref|ZP_02334256.1| ribonuclease D [Yersinia pestis FV-1] gi|186895427|ref|YP_001872539.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+] gi|21959080|gb|AAM85795.1|AE013826_7 RNase D [Yersinia pestis KIM 10] gi|45436582|gb|AAS62136.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001] gi|108775363|gb|ABG17882.1| ribonuclease D [Yersinia pestis Nepal516] gi|108779367|gb|ABG13425.1| ribonuclease D [Yersinia pestis Antiqua] gi|145210039|gb|ABP39446.1| ribonuclease D [Yersinia pestis Pestoides F] gi|186698453|gb|ACC89082.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+] Length = 386 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR IA+DTE + +L ++QL G+ I + +L D Sbjct: 32 ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFRALLQDLNVV 89 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F P+ T++ + + + G + E G+ + K++ Sbjct: 90 KYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFS-GRSLSCGFAMLVAEFEGVELDKSES 148 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 149 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 202 >gi|238754880|ref|ZP_04616230.1| Ribonuclease D [Yersinia ruckeri ATCC 29473] gi|238706891|gb|EEP99258.1| Ribonuclease D [Yersinia ruckeri ATCC 29473] Length = 373 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR+ +A+DTE + +L ++QL G+ I + +L D+ Sbjct: 19 ARHHAQVALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLP--ITEWQPFRELLQDQSVV 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F P+ T++ + T T G + EL G+ + K++ Sbjct: 77 KFLHAGSEDLEVFLNAFQQLPTPMIDTQVLAAFT-GRTLSCGFAMLVAELQGVELDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A L+++Q YAA+DV +L + Q + GR A C L R Sbjct: 136 RTDWLARPLTEKQCDYAAADVFYLLPMAQQLVAATEAAGRMAAAEDECLLLCRR 189 >gi|227355430|ref|ZP_03839826.1| ribonuclease D [Proteus mirabilis ATCC 29906] gi|227164417|gb|EEI49301.1| ribonuclease D [Proteus mirabilis ATCC 29906] Length = 399 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + C AA V IA+DTE + + L ++Q+ G I + Sbjct: 32 FITTNTALEDVCKAASEVSQIALDTEFVRIRTYYPHLGLIQMYDGKQISLIDPLT--ITE 89 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L + K H G D+ V + FG P+ T++ + Y G Sbjct: 90 WTPFVELLTNPAVLKYLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GYPISCGFATL 148 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ I + K++ +DW A L+++Q QYA+ DV +L L + + Q G D Sbjct: 149 VEKYEHIALDKSESRTDWLARPLTEKQCQYASGDVFYLLPLAKKLIAQAQEAGYMDAIVD 208 Query: 183 CCNFLMDRAE 192 C + +R + Sbjct: 209 ECEMIAERRQ 218 >gi|145636341|ref|ZP_01792010.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH] gi|145270506|gb|EDK10440.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH] Length = 382 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + + +L + K Sbjct: 26 LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFIALLANPKV 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H D+ V F RP+ T+I +R GL ++ L + I K Sbjct: 84 LKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C ++ + Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197 >gi|319426180|gb|ADV54254.1| ribonuclease D [Shewanella putrefaciens 200] Length = 369 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 3/166 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +DTE + +L ++Q G I +A + L +L + K Sbjct: 21 QQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAKLWALLANPNIIK 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + + P+F ++IA+ L + G ++ LG I K + Sbjct: 79 LVHSCSEDLEVFAHYGQCQPVPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 137 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +DW L++ QL YAA+DV++LH L Q KL GR + Sbjct: 138 TDWIRRPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGRLNWLYEE 183 >gi|120599067|ref|YP_963641.1| ribonuclease D [Shewanella sp. W3-18-1] gi|120559160|gb|ABM25087.1| ribonuclease D [Shewanella sp. W3-18-1] Length = 367 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 3/166 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +DTE + +L ++Q G I +A + +L + K Sbjct: 19 QQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAKFWALLANPNIIK 76 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + + P+F ++IA+ L + G ++ LG I K + Sbjct: 77 LVHSCSEDLEVFAHYGQCQPVPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 135 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +DW L++ QL YAA+DV++LH L Q KL GR + Sbjct: 136 TDWIRRPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGRLNWLYEE 181 >gi|221134772|ref|ZP_03561075.1| ribonuclease D [Glaciecola sp. HTCC2999] Length = 382 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 3/189 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I ++ + A IAVDTE + + +VQ+ G I IA + Sbjct: 8 IDSYDALLQYCQQAAQQSVIAVDTEFVRTRTFYPHIGLVQIYDGVDIALIDPIA--IDDL 65 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L ++ + + K+ H D+ + GV P+F T++A++L N G + Sbjct: 66 SPLSQLMTNPQVIKVLHACSEDLETFEFALGVMPEPLFDTQVAAQLA-GLGNSVGYGRLV 124 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + L I + K + +DW LS EQL YAA DV++L + EKL+ + Sbjct: 125 ELLQDITLEKGESRTDWIRRPLSPEQLIYAAEDVLYLLPCYFKLAEKLEASQQLHWVYDE 184 Query: 184 CNFLMDRAE 192 N L+ R Sbjct: 185 VNQLIRRKR 193 >gi|51596384|ref|YP_070575.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953] gi|149365996|ref|ZP_01888031.1| ribonuclease D [Yersinia pestis CA88-4125] gi|153949850|ref|YP_001400986.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758] gi|162421744|ref|YP_001606825.1| ribonuclease D [Yersinia pestis Angola] gi|165928352|ref|ZP_02224184.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016] gi|165938856|ref|ZP_02227410.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275] gi|166009317|ref|ZP_02230215.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001] gi|166210648|ref|ZP_02236683.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004] gi|167401505|ref|ZP_02307002.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420357|ref|ZP_02312110.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424411|ref|ZP_02316164.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024358|ref|YP_001720863.1| ribonuclease D [Yersinia pseudotuberculosis YPIII] gi|218929182|ref|YP_002347057.1| ribonuclease D [Yersinia pestis CO92] gi|229894791|ref|ZP_04509971.1| ribonuclease D [Yersinia pestis Pestoides A] gi|229898140|ref|ZP_04513289.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195] gi|229902002|ref|ZP_04517123.1| ribonuclease D [Yersinia pestis Nepal516] gi|270490819|ref|ZP_06207893.1| ribonuclease D [Yersinia pestis KIM D27] gi|294503859|ref|YP_003567921.1| ribonuclease D [Yersinia pestis Z176003] gi|51589666|emb|CAH21296.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953] gi|115347793|emb|CAL20710.1| ribonuclease D [Yersinia pestis CO92] gi|149292409|gb|EDM42483.1| ribonuclease D [Yersinia pestis CA88-4125] gi|152961345|gb|ABS48806.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758] gi|162354559|gb|ABX88507.1| ribonuclease D [Yersinia pestis Angola] gi|165913219|gb|EDR31842.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275] gi|165919635|gb|EDR36968.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016] gi|165991872|gb|EDR44173.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001] gi|166207828|gb|EDR52308.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004] gi|166962052|gb|EDR58073.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049201|gb|EDR60609.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056293|gb|EDR66062.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750892|gb|ACA68410.1| ribonuclease D [Yersinia pseudotuberculosis YPIII] gi|229680898|gb|EEO76993.1| ribonuclease D [Yersinia pestis Nepal516] gi|229688856|gb|EEO80923.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195] gi|229702264|gb|EEO90283.1| ribonuclease D [Yersinia pestis Pestoides A] gi|262362022|gb|ACY58743.1| ribonuclease D [Yersinia pestis D106004] gi|262365841|gb|ACY62398.1| ribonuclease D [Yersinia pestis D182038] gi|270339323|gb|EFA50100.1| ribonuclease D [Yersinia pestis KIM D27] gi|294354318|gb|ADE64659.1| ribonuclease D [Yersinia pestis Z176003] gi|320015246|gb|ADV98817.1| ribonuclease D [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 373 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR IA+DTE + +L ++QL G+ I + +L D Sbjct: 19 ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFRALLQDLNVV 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F P+ T++ + + + G + E G+ + K++ Sbjct: 77 KYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFS-GRSLSCGFAMLVAEFEGVELDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 189 >gi|85059311|ref|YP_455013.1| ribonuclease D [Sodalis glossinidius str. 'morsitans'] gi|84779831|dbj|BAE74608.1| ribonuclease D [Sodalis glossinidius str. 'morsitans'] Length = 380 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 3/175 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R +AVDTE + +L ++Q+ G+ I +A + + +L DE+ K Sbjct: 21 RQHPWVAVDTEFVRTCTYYPQLGLIQMFDGEALTLIDPLA--ITDWQPFIALLADEQVTK 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V +++FG P+ T++ + T G + E L + + K + Sbjct: 79 LLHACSEDLEVFWHSFGQMPVPMIDTQVLAAFT-GRALSCGFAALVAETLDVTLDKTESR 137 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A LS Q YAA+DV L + + + Q+ G A+ C + R Sbjct: 138 TDWLARPLSKRQCDYAAADVYWLLPMAHKLIAQTQQAGWWSQASQECEAICQRRR 192 >gi|37526051|ref|NP_929395.1| ribonuclease D [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785481|emb|CAE14428.1| Ribonuclease D (RNase D) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 375 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + C A+ +A+DTE + +L ++QL G+ I + N Sbjct: 5 LITTDAQLQQVCEGAKKYSKVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPL--NITN 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 ++ + K+ H G D+ V F P+ T++ + + G Sbjct: 63 WQPFRELITHPQILKLLHAGSEDLEVFLNAFQCLPEPMIDTQVLAAFI-GHPLSCGFAAL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + E + + + K++ +DW A LS++Q +YAA+DV +L L + G + AT Sbjct: 122 VAEYIHVELDKSESRTDWLARPLSEKQCEYAAADVYYLLPLADILMTATAQAGYMEAATG 181 Query: 183 CCNFLMDRAE 192 C + R + Sbjct: 182 ECRLISRRRK 191 >gi|238788499|ref|ZP_04632292.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641] gi|238723412|gb|EEQ15059.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641] Length = 394 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AR +A+DTE + +L ++QL G+ I + +L D Sbjct: 39 LARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFRELLQDLNV 96 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K H G D+ V FG+ P+ T++ + + T G + E G+ + K++ Sbjct: 97 VKYLHAGSEDLEVFLNAFGLMPTPMIDTQVLAAFS-GRTLSCGFAMLVNEFEGVELDKSE 155 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q YAA+DV +L L + + R D A C L R Sbjct: 156 SRTDWIARPLSEKQCDYAAADVFYLLPLATKLVAATEAAERMDAAIDECQLLCRR 210 >gi|315634066|ref|ZP_07889355.1| ribonuclease D [Aggregatibacter segnis ATCC 33393] gi|315477316|gb|EFU68059.1| ribonuclease D [Aggregatibacter segnis ATCC 33393] Length = 385 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR A+A+DTE + + +L ++QL GD I ++ + +L DE Sbjct: 30 ARTQSAVALDTEFVRVRTLHPKLGLIQLYAGDEVALIDP--TMIQDFSPFIALLADESVL 87 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + F +P+ T++ + + G ++ I I K Sbjct: 88 KVLHACGEDLEVFQHYFQQLPQPMCDTQVMANFL-GFAGSAGFATLVQHYFHIEIDKGAS 146 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS+ QL+YAA+DV +L L +Q +L + + C FL+ + Sbjct: 147 RTDWLARPLSEIQLRYAAADVWYLLPLYVQMQTQLAQTEWQSAVKNECEFLLHK 200 >gi|260913969|ref|ZP_05920443.1| ribonuclease D [Pasteurella dagmatis ATCC 43325] gi|260632056|gb|EEX50233.1| ribonuclease D [Pasteurella dagmatis ATCC 43325] Length = 383 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + C A+ +A+DTE + + +L ++QL G+ I ++ ++ Sbjct: 16 LITTDQALADVCVFAQQKSVVALDTEFVRIRTLYPQLGLIQLYDGERVSLIDPLS--IQD 73 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + +L ++ K+ H D+ V + + P+ T+I + ++ N GL Sbjct: 74 FSPFIALLANQNVLKVLHACSEDLEVFQHYYQQMPTPMIDTQIMASFL-SFPNSTGLATL 132 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ + I K +DW A LSD+QL YAA+DV +L L + + LQ+ + Sbjct: 133 IQHYFQLEIDKGASRTDWLARPLSDKQLVYAAADVWYLLPLYQRMQQDLQQTPWQSAVEN 192 Query: 183 CCNFLMDRAE 192 C L+ + E Sbjct: 193 DCEMLLAKRE 202 >gi|146292862|ref|YP_001183286.1| ribonuclease D [Shewanella putrefaciens CN-32] gi|145564552|gb|ABP75487.1| ribonuclease D [Shewanella putrefaciens CN-32] Length = 367 Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 3/166 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +DTE + +L ++Q G I +A + +L + K Sbjct: 19 QQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAKFWALLANPNIIK 76 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + + P+F ++IA+ L + G ++ LG I K + Sbjct: 77 LVHSCSEDLEVFAHYGQCQPVPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 135 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +DW L++ QL YAA+DV++LH L Q KL GR + Sbjct: 136 TDWIRRPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGRLNWLYEE 181 >gi|329122266|ref|ZP_08250854.1| ribonuclease D [Haemophilus aegyptius ATCC 11116] gi|327473827|gb|EGF19244.1| ribonuclease D [Haemophilus aegyptius ATCC 11116] Length = 399 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + V +L + K Sbjct: 45 LAQMKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLSNPKV 102 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L I I K Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 161 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C ++ + Sbjct: 162 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 216 >gi|319775680|ref|YP_004138168.1| ribonuclease D [Haemophilus influenzae F3047] gi|317450271|emb|CBY86487.1| ribonuclease D [Haemophilus influenzae F3047] Length = 380 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + V +L + K Sbjct: 26 LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLSNPKV 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H D+ V F RP+ T+I +R GL ++ L I I K Sbjct: 84 LKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C ++ + Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197 >gi|145628753|ref|ZP_01784553.1| ribonuclease D [Haemophilus influenzae 22.1-21] gi|144979223|gb|EDJ88909.1| ribonuclease D [Haemophilus influenzae 22.1-21] Length = 399 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ + +A + V +L + K Sbjct: 45 LAQMKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLVDPLA--ITDFSPFVALLSNPKV 102 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L + I K Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 161 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C ++ + Sbjct: 162 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 216 >gi|270262203|ref|ZP_06190475.1| hypothetical protein SOD_b04110 [Serratia odorifera 4Rx13] gi|270044079|gb|EFA17171.1| hypothetical protein SOD_b04110 [Serratia odorifera 4Rx13] Length = 373 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 3/180 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR IA+DTE + +L ++QL G+ I + Q + +L D + Sbjct: 19 ARNHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQ--WQPFIDLLSDTQIV 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F P+ T+I + T G + E + +++ K++ Sbjct: 77 KFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFT-GRPLSCGFATLVTEYMQVDLDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 +DW A L+++Q YAA+DV +L + Q ++ + G + A + C L R L Sbjct: 136 RTDWLARPLTEKQCVYAAADVFYLLPMAQQLVQETEDAGWTAAAANECLLLCQRRSESLA 195 >gi|308234516|ref|ZP_07665253.1| ribonuclease D [Atopobium vaginae DSM 15829] gi|328944110|ref|ZP_08241575.1| ribonuclease D [Atopobium vaginae DSM 15829] gi|327492079|gb|EGF23853.1| ribonuclease D [Atopobium vaginae DSM 15829] Length = 376 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 5/182 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I +E + + C A D +A+DTE + +LC++QL+ V + ++ + Sbjct: 3 IETYE-QLASFCERATKSDVLAIDTEFMREKTFYPKLCLIQLATRSEIVLVDPLS--IPD 59 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L + +D+K KIFH D+ +++ F +PVF T++A+ + Q G Sbjct: 60 LTDLCKLFLDKKITKIFHACSQDLELIYDIFSCLPKPVFDTQVAAAFL-GHRFQIGYGPL 118 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + L +++ KA+ +DW+ L++EQL+YAA DV +L + +L+ R Sbjct: 119 VDALCHVHLPKAESLTDWTRRPLAEEQLEYAADDVRYLPRMYDTLLHELKEKERYAWFLE 178 Query: 183 CC 184 Sbjct: 179 EM 180 >gi|148827593|ref|YP_001292346.1| ribonuclease D [Haemophilus influenzae PittGG] gi|148718835|gb|ABQ99962.1| ribonuclease D [Haemophilus influenzae PittGG] Length = 401 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + V +L + K Sbjct: 45 LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLANPKV 102 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L I I K Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 161 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C ++ + Sbjct: 162 TLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELILAK 216 >gi|229897495|ref|ZP_04512651.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2] gi|229693832|gb|EEO83881.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2] Length = 308 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR IA+DTE + +L ++QL G+ I + +L D Sbjct: 32 ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFRALLQDLNVV 89 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F P+ T++ + + + G + E G+ + K++ Sbjct: 90 KYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFS-GRSLSCGFAMLVAEFEGVELDKSES 148 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 149 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 202 >gi|238756989|ref|ZP_04618177.1| Ribonuclease D [Yersinia aldovae ATCC 35236] gi|238704819|gb|EEP97348.1| Ribonuclease D [Yersinia aldovae ATCC 35236] Length = 373 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + Q +L D Sbjct: 19 ARTHTHVALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLPITQ--WQPFRALLQDLSVV 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F P+ T++ + + T G + E GI + K++ Sbjct: 77 KYLHAGSEDLEVFLNAFEQMPTPMIDTQVLAAFS-GRTLSCGFAMLVNEFEGIELDKSES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q YAA+DV +L L + E + GR D A C L R Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECELLCRR 189 >gi|15602571|ref|NP_245643.1| ribonuclease D [Pasteurella multocida subsp. multocida str. Pm70] gi|12720994|gb|AAK02790.1| Rnd [Pasteurella multocida subsp. multocida str. Pm70] Length = 383 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 4/183 (2%) Query: 11 IPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + C +A+ IA+DTE + + +L ++QL G+ V +I Q +P + + Sbjct: 23 LAEICYSAQQKAVIALDTEFVRIKTLYPQLGLIQLYDGE-RVSLIDPTTIQDFSP-FIAL 80 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L + K+ H D+ V ++F P+ T+I + + N GL ++ + Sbjct: 81 LANTAVLKVLHACSEDLEVFQHSFNQLPTPMLDTQIMANFL-GFPNSTGLATLVQHYFQL 139 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 I K +DW A LSD QL YAA+DV +L L + E L + + A C L+ Sbjct: 140 EIDKGASRTDWLARPLSDNQLIYAAADVWYLLPLYQRMQEALAQTRWQEAAQQDCEALLL 199 Query: 190 RAE 192 + E Sbjct: 200 KRE 202 >gi|238751610|ref|ZP_04613100.1| Ribonuclease D [Yersinia rohdei ATCC 43380] gi|238710172|gb|EEQ02400.1| Ribonuclease D [Yersinia rohdei ATCC 43380] Length = 394 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + Q ++ D Sbjct: 40 ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQ--WQPFRELIQDLNVV 97 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V F P+ T++ + + + G + E G+ + K++ Sbjct: 98 KYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFS-GRSLSCGFAMLVNEFEGVELDKSES 156 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS++Q YAA+DV +L L + E + GR D A CN L R Sbjct: 157 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECNLLCRR 210 >gi|260582345|ref|ZP_05850138.1| ribonuclease D [Haemophilus influenzae NT127] gi|260094713|gb|EEW78608.1| ribonuclease D [Haemophilus influenzae NT127] Length = 380 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G I +A + V +L + K Sbjct: 26 LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGKHVSLIDPLA--ITDFSPFVALLANPKV 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L I I K Sbjct: 84 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C ++ + Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197 >gi|327484520|gb|AEA78927.1| Ribonuclease D [Vibrio cholerae LMA3894-4] Length = 348 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 13/186 (6%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + +L ++Q+ G+ I V +L D K+ H Sbjct: 1 MLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDEMTPFVELLQDTSVLKVLHACG 58 Query: 84 FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 D+ V FG P+ T+I + Y G +++ L + + K++ +DW A Sbjct: 59 EDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQLQVELDKSESRTDWLAR 117 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---------MDRAELD 194 LSD+QL+YAA+DV +L + + E++ + G D A + A LD Sbjct: 118 PLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQESELQVAKRTKVSNPELAYLD 177 Query: 195 LLG-WE 199 + G W+ Sbjct: 178 IKGAWQ 183 >gi|197285028|ref|YP_002150900.1| ribonuclease D [Proteus mirabilis HI4320] gi|194682515|emb|CAR42495.1| ribonuclease D [Proteus mirabilis HI4320] Length = 372 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + C AA V IA+DTE + + L ++Q+ G I + Sbjct: 5 FITTNTALEDVCKAASEVSQIALDTEFVRIRTYYPHLGLIQMYDGKQISLIDPLT--ITE 62 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 V +L + K H G D+ V + FG P+ T++ + Y G Sbjct: 63 WTPFVELLTNPAVLKYLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GYPISCGFATL 121 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +++ I + K++ +DW A L+++Q QYA+ DV +L L + + Q G D Sbjct: 122 VEKYEHIALDKSESRTDWLARPLTEKQCQYASGDVFYLLPLAKKLIAQAQEAGYMDAIVD 181 Query: 183 CCNFLMDRAE 192 C + +R + Sbjct: 182 ECEMIAERRQ 191 >gi|223041446|ref|ZP_03611649.1| ribonuclease D [Actinobacillus minor 202] gi|223017704|gb|EEF16111.1| ribonuclease D [Actinobacillus minor 202] Length = 373 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 8/197 (4%) Query: 3 TIRVH----EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 TI H + C A AIA+DTE + + +L ++QL G+ I Sbjct: 4 TIHYHWVSTSQQLDEVCQKAATKKAIALDTEFIRIRSFYPQLGLIQLFDGEQVSLIDP-- 61 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + ++ + +L + K+ H D+ V Y F P+ T++ + Sbjct: 62 SSIEDFSPFIALLANPDVIKVLHACSEDLEVFEYRFKQLPTPLVDTQVVAGFLN-RGISI 120 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G ++ L I + K +DW A LS+ Q QYAA+DV +L + + ++L Sbjct: 121 GFAKLVEHYLHIELDKGASRTDWLARPLSEIQCQYAAADVFYLLPVYHKMQKELSENRWQ 180 Query: 178 DLATSCCNFLMDRAELD 194 C + R D Sbjct: 181 KAVEEECQKFLHRKLKD 197 >gi|157370999|ref|YP_001478988.1| ribonuclease D [Serratia proteamaculans 568] gi|157322763|gb|ABV41860.1| ribonuclease D [Serratia proteamaculans 568] Length = 390 Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + C A+ IA+DTE + +L ++QL G+ I + Q Sbjct: 22 LITTDAGLQQVCDQAKKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQ-- 79 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + +L + + K H G D+ V F P+ T+I + T G Sbjct: 80 WQPFIELLSNTQVVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFT-GRPMSCGFATL 138 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + E + + + K++ +DW A L+++Q YAA+DV +L + + ++ + G + A++ Sbjct: 139 VAEYMEVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRLVQETEEAGWTAAASN 198 Query: 183 CCNFLMDR 190 C L R Sbjct: 199 ECLLLCQR 206 >gi|319898087|ref|YP_004136284.1| ribonuclease d [Haemophilus influenzae F3031] gi|317433593|emb|CBY81977.1| ribonuclease D [Haemophilus influenzae F3031] Length = 380 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + V +L + K Sbjct: 26 LAQMKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLSNPKV 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L I I K Sbjct: 84 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C ++ + Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197 >gi|229846478|ref|ZP_04466586.1| ribonuclease D [Haemophilus influenzae 7P49H1] gi|229810571|gb|EEP46289.1| ribonuclease D [Haemophilus influenzae 7P49H1] Length = 380 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + V +L + K Sbjct: 26 LAQQQSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLSNPKV 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L I I K Sbjct: 84 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGTSAGLAKLAQQYLNIEIDKGA 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C ++ + Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197 >gi|126174091|ref|YP_001050240.1| ribonuclease D [Shewanella baltica OS155] gi|125997296|gb|ABN61371.1| ribonuclease D [Shewanella baltica OS155] Length = 369 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 3/166 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +DTE + +L ++Q G I +A + +L D K Sbjct: 21 KQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAQFWALLSDPNIVK 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + + P+F ++IA+ L + G ++ LG I K + Sbjct: 79 LVHSCSEDLEVFAHYGKCQPTPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 137 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +DW L++ QL YAA+DV++L+ L Q KL GR Sbjct: 138 TDWIRRPLTEAQLSYAANDVLYLYQLYPQLEAKLSAQGRLAWLYEE 183 >gi|167855622|ref|ZP_02478381.1| ribonuclease D [Haemophilus parasuis 29755] gi|167853249|gb|EDS24504.1| ribonuclease D [Haemophilus parasuis 29755] Length = 388 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 3/173 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IA+DTE + +L ++QL G I ++ + +L +E K+ H Sbjct: 40 SVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLS--ITDFSPFTALLTNENVLKVLH 97 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ V + F +P+ T++ + G L + + K +DW Sbjct: 98 ACSEDLEVFQHYFKQLPQPMLDTQVMAGFV-GIGISIGFAKLALHYLEVELDKGASRTDW 156 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 + LS+ QLQYA +DV +L + + E L + C L+ + ++ Sbjct: 157 LSRPLSEIQLQYACADVWYLLPIYHKLAEDLAKTLWQTAVVEECATLLAKRQI 209 >gi|163752438|ref|ZP_02159629.1| ribonuclease D [Shewanella benthica KT99] gi|161327662|gb|EDP98855.1| ribonuclease D [Shewanella benthica KT99] Length = 380 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 3/166 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R D + +DTE + RL ++Q G I +A N G+L + Sbjct: 29 RQSDLLVLDTEFVRTRTFYARLGLIQAYDGKTLALIDPVAVN--NLSEFWGLLAEPGITT 86 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + +F ++IA+ L + G +++ L I++ K + Sbjct: 87 VLHSCSEDLEVFARNGHCQPANLFDSQIAAALC-GLGHGLGYAKLVEQTLDISLDKGESR 145 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +DW LS+ QL YAA+DV +L+ L Q EKLQ+ GR Sbjct: 146 TDWMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQQQGRLAWVIEE 191 >gi|52425412|ref|YP_088549.1| ribonuclease D [Mannheimia succiniciproducens MBEL55E] gi|52307464|gb|AAU37964.1| Rnd protein [Mannheimia succiniciproducens MBEL55E] Length = 380 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 4/188 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + CA A AIA+DTE + + +L ++QL G+ I ++ Sbjct: 16 LITDDEALADVCARASTKSAIALDTEFVRIRSYYPKLGLIQLYDGEQVSLIDP--QEIQD 73 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L D K K+ H D+ V + + P+ T+I + + N GL Sbjct: 74 FSPFKQLLADPKILKVLHACHEDLEVFQHYYQQLPAPMLDTQIMANFL-GFQNSMGLASL 132 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +K + I K +DW A LS+ QL YAA+DV +L L + L++ Sbjct: 133 IKHYFNLEIDKGASRTDWLARPLSNRQLAYAAADVWYLLPLYCKMQNALEQTRWQSAVEF 192 Query: 183 CCNFLMDR 190 CN L+++ Sbjct: 193 DCNLLLEK 200 >gi|157962268|ref|YP_001502302.1| ribonuclease D [Shewanella pealeana ATCC 700345] gi|157847268|gb|ABV87767.1| ribonuclease D [Shewanella pealeana ATCC 700345] Length = 369 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 1 MTTIRVHEGDIP-AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 M + E D A +Y DA + +DTE + RL ++Q G I +A Sbjct: 1 MLAFQYIEDDASLAALVEQYQDADLLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPLA 60 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 +L E K+ H D+ V + +F ++IA+ L + Sbjct: 61 VSNLEL--FWQLLSKESSVKLLHSCSEDLEVFARYGNCQPTNLFDSQIAAGLA-GMGHGL 117 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G +++ L +++ K + +DW L++ QL YAA+DV +L+ L Q + L+ GR Sbjct: 118 GYAKLVEQTLEVSLDKGESRTDWLKRPLTEAQLNYAANDVYYLYKLYPQLVKLLEEQGRL 177 Query: 178 DLATSC 183 D Sbjct: 178 DWVYEE 183 >gi|153000417|ref|YP_001366098.1| ribonuclease D [Shewanella baltica OS185] gi|160875014|ref|YP_001554330.1| ribonuclease D [Shewanella baltica OS195] gi|217973594|ref|YP_002358345.1| ribonuclease D [Shewanella baltica OS223] gi|151365035|gb|ABS08035.1| ribonuclease D [Shewanella baltica OS185] gi|160860536|gb|ABX49070.1| ribonuclease D [Shewanella baltica OS195] gi|217498729|gb|ACK46922.1| ribonuclease D [Shewanella baltica OS223] gi|315267246|gb|ADT94099.1| ribonuclease D [Shewanella baltica OS678] Length = 369 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 3/166 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +DTE + +L ++Q G I +A + +L D K Sbjct: 21 KQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAQFWALLSDPNIIK 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + + P+F ++IA+ L + G ++ LG I K + Sbjct: 79 LVHSCSEDLEVFAHYGKCQPTPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 137 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +DW L++ QL YAA+DV++L+ L Q KL GR Sbjct: 138 TDWIRRPLTEAQLSYAANDVLYLYQLYPQLEAKLSAQGRLAWLYEE 183 >gi|262167934|ref|ZP_06035634.1| ribonuclease D [Vibrio cholerae RC27] gi|262023661|gb|EEY42362.1| ribonuclease D [Vibrio cholerae RC27] Length = 348 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 13/186 (6%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + +L ++Q+ G+ I V +L D K+ H Sbjct: 1 MLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDEMTPFVELLQDTSVLKVLHACG 58 Query: 84 FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 D+ V FG P+ T+I + Y G +++ L + + K++ +DW A Sbjct: 59 EDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQLQVELDKSESRTDWLAR 117 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---------MDRAELD 194 LSD+QL+YAA+DV +L + + E++ + G D A + A LD Sbjct: 118 PLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQESELQVAKRTKVSNPELAYLD 177 Query: 195 LLG-WE 199 + G W+ Sbjct: 178 IKGAWQ 183 >gi|212635098|ref|YP_002311623.1| ribonuclease D [Shewanella piezotolerans WP3] gi|212556582|gb|ACJ29036.1| Ribonuclease D [Shewanella piezotolerans WP3] Length = 369 Score = 210 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 7/197 (3%) Query: 1 MTTIRVHEGD--IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 M + + D + A A R + +DTE + RL ++Q G I +A Sbjct: 1 MLAFQYIDDDTSLAALVAQYREAKLLVIDTEFVRTRTYYARLGLIQAYDGKTLALIDPLA 60 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 N +L D K+ H D+ V + +F ++IA+ L Sbjct: 61 V--TNLSLFWALLTDSSIIKLLHSCSEDLEVFAKNGACQPNKLFDSQIAAGLC-GMGYGL 117 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G +++ L I + K + +DW LS+ QL YAA+DV +L+ L Q +KL+ GR Sbjct: 118 GYAKLVEQTLDITLDKGESRTDWLKRPLSEAQLNYAANDVYYLYELYPQLVDKLESQGRL 177 Query: 178 DLATSCCNFLMDRAELD 194 D + + LD Sbjct: 178 DWVYEDGERM-TQGRLD 193 >gi|238919524|ref|YP_002933039.1| ribonuclease D [Edwardsiella ictaluri 93-146] gi|238869093|gb|ACR68804.1| ribonuclease D, putative [Edwardsiella ictaluri 93-146] Length = 371 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A IA+DTE + +L +VQL G+ I + + V +L + + Sbjct: 20 ASACPYIALDTEFVRTRTYYPQLGLVQLYDGEMLSLIDPLTIS--DWQPFVDLLRNPQVV 77 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + F +P+ T+I + + + G + L +++ K++ Sbjct: 78 KLLHASSEDLEVFLHDFQTLPQPLIDTQILAAFSGRPLSS-GFAAMVSAYLQVDLDKSES 136 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW A LS+ Q YAA+DV +L + + +++ G A C L R Sbjct: 137 RTDWLARPLSERQCDYAAADVYYLLPMAHKLLAEVEACGWLPSALDECQALCRR 190 >gi|170717427|ref|YP_001784527.1| ribonuclease D [Haemophilus somnus 2336] gi|168825556|gb|ACA30927.1| ribonuclease D [Haemophilus somnus 2336] Length = 381 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ IA+DTE + +L ++QL G+ I + + +L ++K Sbjct: 30 AQQKTVIALDTEFVRTKSFYPKLGLIQLYDGEQVSLIDPFELN--DFSPFIQLLANQKVT 87 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + F P+ T+I + + + N GL LK + I K Sbjct: 88 KVLHACSEDLEVFQHYFQQLPTPMLDTQIMAAFLQ-HGNSIGLATLLKHYFKLEIDKGIS 146 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W A LSD QL YAA+DV +L L + +KL + + C L+ + Sbjct: 147 RTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTSWQSAVQNDCENLLKK 200 >gi|302335597|ref|YP_003800804.1| ribonuclease D [Olsenella uli DSM 7084] gi|301319437|gb|ADK67924.1| ribonuclease D [Olsenella uli DSM 7084] Length = 376 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 3/170 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +A+DTE L RLC++Q + D + I I + L +L DE K+FH Sbjct: 21 VLAIDTEFLRERTYFPRLCLIQAATPDESAAIDPIL--IDDLSPLARLLTDESITKVFHA 78 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ V++ P+F T++A+ + Q G + G+ + KA+ +DWS Sbjct: 79 CSQDLEVIYDALHCVPGPIFDTQLAAAFL-GHRQQIGYGALVDACCGVRLPKAESLTDWS 137 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 L EQL YA DV +L + Q +L R L+ A Sbjct: 138 RRPLDAEQLAYAEDDVRYLPGIYDQMMAELIMRDRLPWLAPEMAELVSPA 187 >gi|145632638|ref|ZP_01788372.1| ribonuclease D [Haemophilus influenzae 3655] gi|144986833|gb|EDJ93385.1| ribonuclease D [Haemophilus influenzae 3655] gi|309972450|gb|ADO95651.1| Ribonuclease D [Haemophilus influenzae R2846] Length = 380 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + + +L + K Sbjct: 26 LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFIALLANPKV 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F P+ T+I +R GL ++ L I I K Sbjct: 84 LKILHSCSEDLLVFLQEFDQLPHPMIDTQIMARFI-GLGASAGLAKLAQQYLNIEIDKGA 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C + + Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALSK 197 >gi|145640347|ref|ZP_01795931.1| ribonuclease D [Haemophilus influenzae R3021] gi|145274933|gb|EDK14795.1| ribonuclease D [Haemophilus influenzae 22.4-21] Length = 380 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + + +L + K Sbjct: 26 LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFIALLANPKV 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L + I K Sbjct: 84 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNVEIDKGA 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + + C + + Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALAK 197 >gi|148825327|ref|YP_001290080.1| ribonuclease D [Haemophilus influenzae PittEE] gi|148715487|gb|ABQ97697.1| translation-associated GTPase [Haemophilus influenzae PittEE] Length = 380 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + + +L + K Sbjct: 26 LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFIALLANPKV 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L I I K Sbjct: 84 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNIEIDKGA 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + + C + + Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALSK 197 >gi|24374123|ref|NP_718166.1| ribonuclease D [Shewanella oneidensis MR-1] gi|24348616|gb|AAN55610.1|AE015699_8 ribonuclease D [Shewanella oneidensis MR-1] Length = 367 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 4/184 (2%) Query: 1 MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M E + A A + + +DTE + +L ++Q G I IA Sbjct: 1 MFQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPIA-- 58 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + +L + K+ H D+ V + + P+F ++IA+ L + G Sbjct: 59 LPDLSAFWALLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLC-GMGHGLGY 117 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ LG I K + +DW L+D QL YAA+DV++L+ L Q EKLQ R D Sbjct: 118 AKLVETCLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQDRLDW 177 Query: 180 ATSC 183 Sbjct: 178 LYEE 181 >gi|304411369|ref|ZP_07392983.1| ribonuclease D [Shewanella baltica OS183] gi|307305309|ref|ZP_07585057.1| ribonuclease D [Shewanella baltica BA175] gi|304350224|gb|EFM14628.1| ribonuclease D [Shewanella baltica OS183] gi|306911612|gb|EFN42037.1| ribonuclease D [Shewanella baltica BA175] Length = 369 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 3/172 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +DTE + +L ++Q G I +A + +L D K Sbjct: 21 KQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAQFWALLSDPNIIK 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + + P+F ++IA+ L + G ++ LG I K + Sbjct: 79 LVHSCSEDLEVFAHYGKCQPTPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 137 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +DW L++ QL YAA+DV++L+ L Q KL GR + Sbjct: 138 TDWIRRPLTEAQLSYAANDVLYLYQLYPQLEAKLSVQGRLAWLYEEGERMTQ 189 >gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1] gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1] Length = 399 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + V +L + K Sbjct: 45 LAQQQSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLANPKV 102 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L I I K Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 161 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C + + Sbjct: 162 TLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALAK 216 >gi|290475404|ref|YP_003468292.1| RNase D, processes tRNA [Xenorhabdus bovienii SS-2004] gi|289174725|emb|CBJ81524.1| RNase D, processes tRNA precursor [Xenorhabdus bovienii SS-2004] Length = 385 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 3/180 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ IA+DTE + +L ++QL G+ I + +L D Sbjct: 29 AKKHATIALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPL--DISEWQPFRELLTDRDVL 86 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K H G D+ V + +F P+ T++ + + G + + L + + K++ Sbjct: 87 KFIHAGSEDLEVFWNSFQCLPTPMIDTQVLAAFI-GHPMSCGFATLVAQYLHVELDKSES 145 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 +DW A LS++Q +YAA+DV +L L ++ G A + R + L+ Sbjct: 146 RTDWLARPLSEKQCEYAAADVYYLLPLADILMAATEQAGYMGAAQDESYLIAQRRKEILM 205 >gi|256827062|ref|YP_003151021.1| ribonuclease D [Cryptobacterium curtum DSM 15641] gi|256583205|gb|ACU94339.1| ribonuclease D [Cryptobacterium curtum DSM 15641] Length = 399 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 4/191 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + ++ A A +A+DTE L RLC++Q+ D T+ + A + Sbjct: 20 FITDQAELEAFAKRALDSSVLAIDTEFLREKTYYARLCLLQMQTDDETIIVDPFAVS--D 77 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L + KI H GR D+ +L G+ +P+F T++A+ L +T Q G Sbjct: 78 LGVLAPLFQSSSIMKIVHSGRQDLEILNREVGLLPQPLFDTQVAAALL-GHTQQIGYGSL 136 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + G+ ++K +DWS LS Q+ YAA DV++L L T++L+RLGR Sbjct: 137 VSAVCGVQLAKMDSFTDWSRRPLSASQISYAADDVIYLPQLYHTMTDELERLGRIHWLDP 196 Query: 183 CCNFLMDRAEL 193 L+D A Sbjct: 197 DFAALIDPALY 207 >gi|307825065|ref|ZP_07655286.1| ribonuclease D [Methylobacter tundripaludum SV96] gi|307733813|gb|EFO04669.1| ribonuclease D [Methylobacter tundripaludum SV96] Length = 389 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 3/178 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + +A+DTE L + C++Q++ + I IA + L + K Sbjct: 22 KKEPWLALDTEFLREKTYYPKFCLLQIATPEWVACIDPIALPSLD--ILFEAIYSPSIVK 79 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FH R D+ + + G P+F T+IA+ L + G + LL +N++KA Sbjct: 80 VFHSCRQDLEIFYQLTGKLPEPLFDTQIAAPLL-GFQENPGYAMLVSSLLNVNLNKAHTR 138 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 +DWS L D ++QYAA DV++L + +KL LGR++ L + ++ Sbjct: 139 ADWSKRPLIDAEIQYAADDVIYLCKIYQMMLQKLAELGRAEWLERDFAELANPDLYEV 196 >gi|127513115|ref|YP_001094312.1| ribonuclease D [Shewanella loihica PV-4] gi|126638410|gb|ABO24053.1| ribonuclease D [Shewanella loihica PV-4] Length = 368 Score = 209 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 3/166 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R + +DTE + +L ++Q+ G+ I +A + +L + Sbjct: 20 RQAKVLMLDTEFVRTRTYYAKLGLIQVYDGETLALIDPVAVS--DLSAFWALLERDDMIS 77 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ VL + + +F ++IA+ + + G ++ LG+ + K + Sbjct: 78 VLHSCSEDLEVLARYGRCQPKVLFDSQIAAAFC-GWGHGMGYAKLVEHCLGVQLDKGESR 136 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +DW LSD QLQYAA+DV +L+ L Q EKLQ GR Sbjct: 137 TDWMKRPLSDAQLQYAANDVDYLYRLYPQLLEKLQESGRMPWLLEE 182 >gi|145634613|ref|ZP_01790322.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA] gi|145268158|gb|EDK08153.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA] Length = 362 Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + V +L + K Sbjct: 8 LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLANPKV 65 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L + I K Sbjct: 66 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNVEIDKGA 124 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + + C + + Sbjct: 125 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALAK 179 >gi|113460879|ref|YP_718946.1| ribonuclease D [Haemophilus somnus 129PT] gi|112822922|gb|ABI25011.1| ribonuclease D [Haemophilus somnus 129PT] Length = 381 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ IA+DTE + +L ++QL G+ I + + +L ++K Sbjct: 30 AQQKTVIALDTEFVRTKSFYPKLGLIQLYDGEQVSLIDPFELS--DFSPFIQLLANQKVT 87 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + F P+ T+I + + + N GL LK + I K Sbjct: 88 KVLHACSEDLEVFQHYFQQLPTPMLDTQIMAAFLQ-HGNSIGLAILLKHYFKLEIDKGIS 146 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W A LSD QL YAA+DV +L L + +KL + + C L+++ Sbjct: 147 RTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTSWQSAVQNDCENLLNK 200 >gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799] gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799] Length = 374 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 4/178 (2%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 ++ D+ A C R DA+A+DTE + +L ++QL G+ I + Q P Sbjct: 12 NDDDLAALCRQCRQKDAVALDTEFVRTRTLHAQLGLIQLYDGETLALIDPL-EIQDLGP- 69 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L ++ D+ K+ H D+ + Y GV +P+F T++A L G + Sbjct: 70 LWQLIADKNVVKVLHSASEDLEIFAYRGGVIPQPLFDTQVAGVLLNLGG-AMGYGKLIHH 128 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 LG+ + K + +DW LS++QL YAA+DV +L + ++ +GR D Sbjct: 129 YLGLELDKGEARTDWLKRPLSEKQLTYAAADVYYLLQVYRMMRPAIEEMGRLDWLWQE 186 >gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469] gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469] Length = 379 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 3/169 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ +AVDTE L +LC+VQ+S G I + + L +L + + Sbjct: 19 AKTSHILAVDTEFLREKTYFPKLCLVQVSTGSEIAAIDPLL--IDDLTPLKELLENPEIV 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H D+ VL PVF T++A+ Q ++ + ++KA+ Sbjct: 77 KILHACSQDLEVLLEKMDCACAPVFDTQVAAAFLGMR-QQVSYAGLVENFANVKLAKAES 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 +DWS L EQL YA DV +L A+ Q EKL +L R + Sbjct: 136 LTDWSKRPLDKEQLVYAEDDVRYLPAIYNQMVEKLIKLDRLSWLKPEMD 184 >gi|192361069|ref|YP_001982899.1| ribonuclease D [Cellvibrio japonicus Ueda107] gi|190687234|gb|ACE84912.1| ribonuclease D [Cellvibrio japonicus Ueda107] Length = 378 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 5/192 (2%) Query: 3 TIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 I + D AE R AIAVDTE + ++Q+ G G I +A Sbjct: 7 PIWIERADQLAELCVGWRQQGAIAVDTEFMRTDTFYPIAGLLQIGDGKGCYLIDPLAIA- 65 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + L +L+D K K+ H D+ V + P+F T+I + G Sbjct: 66 -DWQPLRELLLDGKVIKVLHSCSEDLEVFQRWLDLVPSPLFDTQIGAAFANLGF-GLGYA 123 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + +K LLGI I K + SDW LS QL+YAA DV H+ + + + L+ R + Sbjct: 124 NLVKTLLGIEIPKDETRSDWLQRPLSQSQLKYAALDVAHMLVVYGKLLQILKTSQRLEWV 183 Query: 181 TSCCNFLMDRAE 192 S C L+++A Sbjct: 184 KSDCADLVEQAR 195 >gi|152978783|ref|YP_001344412.1| ribonuclease D [Actinobacillus succinogenes 130Z] gi|150840506|gb|ABR74477.1| ribonuclease D [Actinobacillus succinogenes 130Z] Length = 383 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 3/176 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A+ A+A+DTE + + +L ++QL G+ I + +L D Sbjct: 27 AQQKSAVALDTEFIRIRSYYPKLGLIQLYDGERVSLIDP--TTITDFSPFTALLADINVI 84 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ V + F P+ T++ + + + GL ++ L + I K Sbjct: 85 KVLHACYEDLEVFSHYFQQLPEPIMDTQVMAGFL-AFPHSTGLASLIRHYLALEIDKGAS 143 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A LS++QLQYAA+DV +L L + +L + C L+++ Sbjct: 144 RTDWLARPLSEKQLQYAAADVWYLLPLYEKMAVELAKTRWQSAVEFDCGLLLEKQR 199 >gi|113970513|ref|YP_734306.1| ribonuclease D [Shewanella sp. MR-4] gi|113885197|gb|ABI39249.1| ribonuclease D [Shewanella sp. MR-4] Length = 384 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 3/172 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +DTE + +L ++Q G I +A + +L + K Sbjct: 36 QQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLSAFWSLLDNPNIIK 93 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + + P+F ++IA+ L + G ++ LG I K + Sbjct: 94 LVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLC-GMGHGLGYAKLVETCLGEVIDKGESR 152 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +DW L++ QL YAA+DV++L+ L Q +KL+ R + + Sbjct: 153 TDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEEGERMTE 204 >gi|114047748|ref|YP_738298.1| ribonuclease D [Shewanella sp. MR-7] gi|113889190|gb|ABI43241.1| ribonuclease D [Shewanella sp. MR-7] Length = 384 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 3/172 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +DTE + +L ++Q G I +A + +L + K Sbjct: 36 QQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLSAFWSLLDNPNIIK 93 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + + P+F ++IA+ L + G ++ LG I K + Sbjct: 94 LVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLC-GMGHGLGYAKLVETCLGEVIDKGESR 152 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +DW L++ QL YAA+DV++L+ L Q +KL+ R + + Sbjct: 153 TDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEEGERMTE 204 >gi|301156355|emb|CBW15826.1| ribonuclease D [Haemophilus parainfluenzae T3T1] Length = 383 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 5/194 (2%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + ++ C AR A+A+DTE + + +L ++QL G+ I ++ Sbjct: 12 TLIQNNEELAQVCQLARQQSAVALDTEFMRVSTYYPKLGLIQLYDGERVSLIDPLS--IT 69 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + V +L D+ KI H D+ V F +P+ T+I +R + N GL Sbjct: 70 DFSPFVELLRDQLVTKILHACNEDLLVFLQEFDALPQPMMDTQIMARFL-GFANSAGLAK 128 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + LGI + K ++W LS QLQYAA DV +L + + +L + Sbjct: 129 LVLHYLGIEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIELAQSPWLQAVI 188 Query: 182 SCCNFLMDR-AELD 194 C + + ++LD Sbjct: 189 DDCQLAISKTSKLD 202 >gi|239992935|ref|ZP_04713459.1| ribonuclease D [Alteromonas macleodii ATCC 27126] Length = 385 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 3/177 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AA+ +A+A+DTE + L ++QL G V I +A N + ++ + + Sbjct: 18 AAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLA--IDNMQPFIDLMENTEV 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H DI F PVF T++A + G ++ L I++ K + Sbjct: 76 VKVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDM-GPSLGYAKLVELLCDISLDKGE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A L + QL YAA+DV++L Q K+Q G+ L+D+ Sbjct: 135 SRTDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEAGKVHWIYQEIALLVDKKR 191 >gi|294141241|ref|YP_003557219.1| ribonuclease D [Shewanella violacea DSS12] gi|293327710|dbj|BAJ02441.1| ribonuclease D [Shewanella violacea DSS12] Length = 369 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 3/166 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R D + +DTE + L ++Q G I +A N +L + Sbjct: 21 RQSDLLVLDTEFVRTRTYYANLGLIQAYDGKTLALIDPVAIN--NLSEFWSLLTEPGITT 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + +F ++IA+ L + + G +++ L I++ K + Sbjct: 79 VLHSCSEDLEVFARNGACQPYNLFDSQIAAALC-GFGHGLGYAKLVEQTLDISLDKGESR 137 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +DW LS+ QL YAA+DV +L+ L Q EKLQ GR Sbjct: 138 TDWMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQEQGRLAWLFEE 183 >gi|109899113|ref|YP_662368.1| ribonuclease D [Pseudoalteromonas atlantica T6c] gi|109701394|gb|ABG41314.1| ribonuclease D [Pseudoalteromonas atlantica T6c] Length = 400 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 5/189 (2%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + A CA AIAVDTE + +L ++Q+ G I + + Sbjct: 17 TTDETLNAYCAQLAKAQAIAVDTEFVRTRTLYPQLGLIQIYDGQQIALIDPLEIS--DFT 74 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L DE K+ H DI + RP+F ++ A+ +T G ++ Sbjct: 75 ALKAILTDENIVKVLHSCSEDIETFICALDIVPRPIFDSQFAAAIT-GMGPSLGYAKLVE 133 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 +L I + K + +DW A LS +Q QYAA DV++L L +K GR + Sbjct: 134 VMLDIQVDKGESRTDWLARPLSPKQCQYAAYDVLYLFQLYPTLCDKTLAQGRQAWVFAEM 193 Query: 185 NFLMDRAEL 193 L R +L Sbjct: 194 ENL-TRKKL 201 >gi|213586553|ref|ZP_03368379.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 165 Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 4/162 (2%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 4 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 62 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 G+ + K++ +DW A LS+ Q +YAA+DV +L + + Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKL 162 >gi|88607542|ref|YP_504762.1| putative ribonuclease D [Anaplasma phagocytophilum HZ] gi|88598605|gb|ABD44075.1| putative ribonuclease D [Anaplasma phagocytophilum HZ] Length = 381 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 6/186 (3%) Query: 9 GDIPAECAA---RYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D+ C +++A+DTE L +LC++Q++ + I +A G P Sbjct: 7 NDLSRFCTELLRDNPESVAIDTEFLRSFNDYYPKLCLLQIAYENKQCVIDALAEGIDLTP 66 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + + + K+FH R D+ L F RP+F T+IA+ L + N G ++ Sbjct: 67 -LQEIFDNTQIFKVFHDCRQDLDALSLLFESLPRPIFDTQIAAMLCEYHENSVGYSKLVE 125 Query: 125 ELLGINISKA-QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + LG+ ++K + DWS L++ +++YA DV++L+ L + L GR Sbjct: 126 QFLGVKLNKMPFKRVDWSKRPLTESEVRYALDDVIYLYKLYGILRDILTSKGRLSWYMEE 185 Query: 184 CNFLMD 189 + ++D Sbjct: 186 MDCIVD 191 >gi|254786713|ref|YP_003074142.1| ribonuclease D [Teredinibacter turnerae T7901] gi|237686111|gb|ACR13375.1| ribonuclease D [Teredinibacter turnerae T7901] Length = 393 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 4/180 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVDTE + ++Q++ G+ + I +A + L ++ + K+ H Sbjct: 32 LAVDTEFMRSQTYYPITGLIQVNDGNTSYLIDPLAF--DDFTPLAELMENPGVLKVLHSC 89 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ V G+ + + T+IAS L Y G + +LG + K + SDW Sbjct: 90 SEDLEVFHRFLGIVPKHMLDTQIASALC-GYGFSVGFGKLVHAVLGEELPKEETRSDWLH 148 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 LS Q+ YAA DV +L+ L KL+ LGR C ++ R D +N D Sbjct: 149 RPLSSAQIDYAAIDVEYLYKLASILVLKLKNLGRLTWVAEDCEAML-RQFADNQAVDNSD 207 >gi|68248994|ref|YP_248106.1| ribonuclease D [Haemophilus influenzae 86-028NP] gi|68057193|gb|AAX87446.1| ribonuclease D [Haemophilus influenzae 86-028NP] Length = 380 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL + I +A + V +L + K Sbjct: 26 LAQMKSAVALDTEFMRVSTYFPKLGLIQLYDDERVSLIDPLA--ITDFSPFVALLSNPKV 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H D+ V F RP+ T+I +R GL ++ L I I K Sbjct: 84 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 142 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W LSD QLQYAA DV +L L ++L + C + + Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALAK 197 >gi|219870644|ref|YP_002475019.1| ribonuclease D [Haemophilus parasuis SH0165] gi|219690848|gb|ACL32071.1| ribonuclease D [Haemophilus parasuis SH0165] Length = 375 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 3/173 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IA+DTE + +L ++QL G I ++ + +L +E K+ H Sbjct: 27 SVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLS--ITDFSPFTALLANENVLKVLH 84 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ V + F +P+ T++ + G L + + K +DW Sbjct: 85 ACGEDLEVFQHYFKQLPQPMLDTQVMAGFV-GLGISIGFAKLALHYLEVELDKGASRTDW 143 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 + LS+ QLQYA +DV +L + + E L + C L+ + ++ Sbjct: 144 LSHPLSEIQLQYACADVWYLLPIYHKLAEDLAKTPWQTAVVEECATLLAKRQI 196 >gi|117920828|ref|YP_870020.1| ribonuclease D [Shewanella sp. ANA-3] gi|117613160|gb|ABK48614.1| ribonuclease D [Shewanella sp. ANA-3] Length = 388 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 3/172 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +DTE + +L ++Q G I +A + +L + K Sbjct: 40 QQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLSAFWSLLDNPNIIK 97 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + + P+F ++IA+ L + G ++ LG I K + Sbjct: 98 LVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLC-GMGHGLGYAKLVETCLGEVIDKGESR 156 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +DW L++ QL YAA+DV++L+ L Q +KL+ R + + Sbjct: 157 TDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEEGERMTE 208 >gi|254492081|ref|ZP_05105256.1| ribonuclease D [Methylophaga thiooxidans DMS010] gi|224462633|gb|EEF78907.1| ribonuclease D [Methylophaga thiooxydans DMS010] Length = 379 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 5/184 (2%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 D+ + A +A+DTE +LC++Q++ D + + + L+ + Sbjct: 14 DLCEQLA--ESTWLAIDTEFHREKTYYPQLCLIQVANDDVIACVDPLK--IDDLSPLMDV 69 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 +FH R D+ +LF + VF T++A+ + Y +Q G + +K+ L + Sbjct: 70 FYRTDMTLVFHAARQDLELLFLLRDALPQQVFDTQLAATVL-GYGDQIGYGNLVKQCLNV 128 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ KA +DW LS EQ+ YAA DV +L L Q KL GR + L Sbjct: 129 DLDKAHARTDWRQRPLSPEQIDYAADDVRYLRELYHQLEAKLVDTGRINWLKEDFATLSA 188 Query: 190 RAEL 193 Sbjct: 189 TETY 192 >gi|170726464|ref|YP_001760490.1| ribonuclease D [Shewanella woodyi ATCC 51908] gi|169811811|gb|ACA86395.1| ribonuclease D [Shewanella woodyi ATCC 51908] Length = 369 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 3/172 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R + +DTE + RL ++Q G I +A + +L + Sbjct: 21 RESQLLVLDTEFVRTRTFYARLGLIQAYDGKTLALIDPVAVS--DLSGFWSLLTEPSITT 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ V + +F ++IA+ L + + G +++ L I + K + Sbjct: 79 ILHSCSEDLEVFARNGQCQPVKLFDSQIAAALC-GFGHGLGYAKLVEQTLNIPLDKGESR 137 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +DW LS+ QL YAA+DV +L+ L Q EKL+ R + Sbjct: 138 TDWMKRPLSEAQLNYAANDVYYLYQLYPQLVEKLEEQNRLGWVFEEGERMTQ 189 >gi|157375657|ref|YP_001474257.1| ribonuclease D [Shewanella sediminis HAW-EB3] gi|157318031|gb|ABV37129.1| ribonuclease D [Shewanella sediminis HAW-EB3] Length = 369 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 3/172 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R + +DTE + RL ++Q G I IA G N +L + + Sbjct: 21 RQSTLLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPIAVG--NLSEFWSLLTEPEITT 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + +F ++IA+ L + + G +++ L I + K + Sbjct: 79 VLHSCSEDLEVFARNGQCQPIRLFDSQIAASLC-GFGHGLGYAKLVEQTLNIALDKGESR 137 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +DW LS QL YAA+DV +L+ L Q +KL+ R D + Sbjct: 138 TDWMKRPLSKAQLTYAANDVYYLYELYPQLIQKLEDTDRLDWVFEEGERMTQ 189 >gi|114562909|ref|YP_750422.1| ribonuclease D [Shewanella frigidimarina NCIMB 400] gi|114334202|gb|ABI71584.1| ribonuclease D [Shewanella frigidimarina NCIMB 400] Length = 370 Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 6/186 (3%) Query: 1 MTTIRVHEGD---IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 M T D + + + +DTE + +L ++Q G I +A Sbjct: 1 MLTFEYISDDASLLSLVEQYQQSTLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA 60 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + +L D+ K+ H D+ V + + P+F ++IA+ + Sbjct: 61 --ITDLSPFWQLLTDQNIVKLVHSCSEDLEVFAHYGECQPSPLFDSQIAASFA-GLGHGL 117 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G + L + I K + +DW LSD QLQYAA+DV +L+ L Q +KL R Sbjct: 118 GYAKLVDACLQVEIDKGESRTDWMNRPLSDAQLQYAANDVFYLYQLYPQLQQKLAADNRV 177 Query: 178 DLATSC 183 + Sbjct: 178 EWLFEE 183 >gi|284006971|emb|CBA72245.1| ribonuclease D [Arsenophonus nasoniae] Length = 386 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 4/190 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + + C AA IA+DTE + + +L ++QL G+ I IA N Sbjct: 17 LITTDAQLKEVCQAASKASKIALDTEFVRVKTYYPQLSLIQLYDGEQLSLIDPIA--ITN 74 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L D K KI H G DI V F+ +P+ T+I + + G Sbjct: 75 MEPFKNLLTDGKVTKILHAGSEDIEVFFHHLACVPQPMLDTQIMAAFV-GHPISSGFASL 133 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + L I + K++ +DW LSD+Q QYAA+DV L L + + + +LG T Sbjct: 134 VNKYLTIALDKSESRTDWLVRPLSDKQCQYAAADVFFLLPLAEKLQQLVDKLGYLPAVTD 193 Query: 183 CCNFLMDRAE 192 C ++ R + Sbjct: 194 ECQRILLRRQ 203 >gi|167623763|ref|YP_001674057.1| ribonuclease D [Shewanella halifaxensis HAW-EB4] gi|167353785|gb|ABZ76398.1| ribonuclease D [Shewanella halifaxensis HAW-EB4] Length = 369 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 3/166 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + D + +DTE + RL ++Q G I +A +L E K Sbjct: 21 QEADLLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPLAVSNLEL--FWQLLNKESSVK 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + +F ++IA+ L + G +++ L +++ K + Sbjct: 79 LLHSCSEDLEVFARYGQCQPTNLFDSQIAAGLA-GMGHGLGYAKLVEQTLEVSLDKGESR 137 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +DW L++ QL YAA+DV +L+ L Q +KL+ GR D Sbjct: 138 TDWLKRPLTEAQLNYAANDVYYLYKLYPQLVDKLKEQGRLDWVYEE 183 >gi|332141837|ref|YP_004427575.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype'] gi|327551859|gb|AEA98577.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype'] Length = 385 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 3/177 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AA+ +A+A+DTE + L ++QL G V I +A N V +L + + Sbjct: 18 AAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLA--IDNMQPFVALLENTEV 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H D+ F PVF T+IA + G ++ L I++ K + Sbjct: 76 VKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDM-GPSLGYAKLVELLCEISLDKGE 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW A L + QL YAA+DV++L Q +Q LG+ L+++ Sbjct: 135 SRTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGKVHWIYEEVALLVEKKR 191 >gi|303232226|ref|ZP_07318925.1| ribonuclease D [Atopobium vaginae PB189-T1-4] gi|302481636|gb|EFL44697.1| ribonuclease D [Atopobium vaginae PB189-T1-4] Length = 437 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 4/187 (2%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 ++ A CA +A+DTE + +LC++Q++ + + +A + Sbjct: 63 FITTPDELKAFCAHVAQEGCVAIDTEFIREKTYYPQLCLIQMATHTQSAVVDPLACS--S 120 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L +L D+ K+F DI VL+ GV + VF ++A+ Y Q G Sbjct: 121 LCDLACLLEDKSIIKVFFACSQDIEVLYDALGVVPKNVFDAQLAAAFL-GYRYQLGYGAL 179 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ ++G+++ K Q +DWS L++EQL+YAA DV++ + +L R R T Sbjct: 180 VEAMVGVHLPKTQALTDWSLRPLTEEQLKYAADDVIYQPQMYTLLVRELTRTNRYAWFTH 239 Query: 183 CCNFLMD 189 +D Sbjct: 240 EMKQTLD 246 >gi|119476222|ref|ZP_01616573.1| ribonuclease D [marine gamma proteobacterium HTCC2143] gi|119450086|gb|EAW31321.1| ribonuclease D [marine gamma proteobacterium HTCC2143] Length = 384 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 3/172 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 ++ +A+DTE + ++Q+S G G I ++ + L +L D K Sbjct: 30 QHAAVLALDTEFIRTDTFYPIGALLQISEGTGCFLIDPLS--IDDFSPLTALLTDPAIVK 87 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V F V +P+ T+IA+ L Y G + + LL I+++K + Sbjct: 88 VLHSCSEDLEVFERLFQVLPQPLIDTQIAAGL-DGYGFSLGYQKMTEALLQIHVAKGETR 146 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 S+W L++ Q+ YAA DV +L + Q + L+ GR C+ L + Sbjct: 147 SNWLQRPLTESQIHYAALDVAYLPEMYQQLKQSLESKGRWQWLLDECSPLTN 198 >gi|190575218|ref|YP_001973063.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a] gi|190013140|emb|CAQ46772.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a] Length = 359 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 4/199 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M T ++ A R I +DTE + +L +VQ++ G + I + G Sbjct: 1 MATWITTPAELDAYFQQRPT-RIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGM 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L DE K+ H D+ + GV RP+F T+I + L G + Sbjct: 60 TEA--LAHWLADESITKVMHSASEDLVAFRWACGVLPRPLFDTQIGASLAGIGG-GMGYQ 116 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + E+ G+ ++K + SDW LS+ QLQYAA DV HL AL +LQ LGR Sbjct: 117 KLVAEITGVALAKGETRSDWMRRPLSESQLQYAADDVEHLFALHDAIDARLQALGRQQWL 176 Query: 181 TSCCNFLMDRAELDLLGWE 199 L+ D W Sbjct: 177 HDDGERLLASVANDEDRWP 195 >gi|238897738|ref|YP_002923417.1| RNase D, processes tRNA precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465495|gb|ACQ67269.1| RNase D, processes tRNA precursor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 387 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 4/188 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + D+ C A A+A+DTE + L ++QL G I Sbjct: 16 LITTNEDLHHICELAVLRKAVALDTEFVRTKTYYAELGLIQLYDGHRVSLIDPFL--ITE 73 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L ++K K H DI + F+ F P+ ++I + T G Sbjct: 74 WAPFYCLLKNKKIVKFLHSAGEDIEIFFHFFKTLPEPLIDSQILAAFT-GRPVSCGFSIL 132 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +KE GI ++KA+ +DW A LS +Q YAA DV +L L +K++ G + Sbjct: 133 VKEFQGIVLNKAESRTDWLARPLSQKQCDYAAEDVFYLLPLANALMKKIETSGWMEAVKE 192 Query: 183 CCNFLMDR 190 C L R Sbjct: 193 ECELLCQR 200 >gi|254522754|ref|ZP_05134809.1| ribonuclease D [Stenotrophomonas sp. SKA14] gi|219720345|gb|EED38870.1| ribonuclease D [Stenotrophomonas sp. SKA14] Length = 359 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 4/199 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M T ++ A R I +DTE + +L +VQ++ G + I + G Sbjct: 1 MATWITTPAELDAYFQQRP-SRIGLDTEFIRERTFWPQLALVQMAVGRDILLIDPLIPGM 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L DE K+ H D+ + GV RP+F T+I + L G + Sbjct: 60 TEA--LAPWLADESIIKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLAGIGG-GMGYQ 116 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + E+ G+ ++K + SDW LS+ QLQYAA DV HL AL +LQ LGR Sbjct: 117 KLVAEITGVALAKGETRSDWMRRPLSESQLQYAADDVEHLFALHDAIGARLQALGRQQWL 176 Query: 181 TSCCNFLMDRAELDLLGWE 199 L+ D W Sbjct: 177 HDDGERLLASVANDEDRWP 195 >gi|325578461|ref|ZP_08148596.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392] gi|325160197|gb|EGC72326.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392] Length = 383 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 5/194 (2%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + ++ C AR A+A+DTE + + +L ++QL G+ I ++ Sbjct: 12 TLIQNNEELAQVCQLARQQSAVALDTEFMRISTYYPKLGLIQLYDGERVSLIDPLS--IT 69 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + V +L D++ KI H D+ V F + + T+I +R + N GL Sbjct: 70 DFSPFVELLRDQQVTKILHACNEDLLVFLQEFDALPQLMMDTQIMARFL-GFANSAGLAK 128 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + LGI + K ++W LS QLQYAA DV +L + + +L + Sbjct: 129 LVLHYLGIEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIELAQSPWLQAVI 188 Query: 182 SCCNFLMDR-AELD 194 C + + ++LD Sbjct: 189 DDCQLAISKTSKLD 202 >gi|302037758|ref|YP_003798080.1| ribonuclease D [Candidatus Nitrospira defluvii] gi|300605822|emb|CBK42155.1| Ribonuclease D [Candidatus Nitrospira defluvii] Length = 401 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 5/188 (2%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T + + A C + IA+DTE +G RL ++Q++ +G +I A Q+ Sbjct: 9 TFITSDDALDALCDQLIHSSVIAIDTEFMGEEHFIPRLELIQVAA-EGVAAVIDFPAVQE 67 Query: 62 NAP--NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 AP ++ D + EK+ H GR D+ + + G +P F T+IA+ + Y Q Sbjct: 68 AAPMARFWEIVCDARIEKVLHAGRQDLELFAHHAGRLPKPFFDTQIAAAMV-GYGAQTAY 126 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + ++ + G+ + KA ++WS LS EQL YA DV L + +KL +GRS+ Sbjct: 127 ANLVQRVQGVKLDKAHTFTNWSQRPLSREQLVYALDDVTFLLPVHRHLRQKLSVMGRSEW 186 Query: 180 ATSCCNFL 187 L Sbjct: 187 VDEEFARL 194 >gi|206576967|ref|YP_002237811.1| ribonuclease D [Klebsiella pneumoniae 342] gi|290508867|ref|ZP_06548238.1| ribonuclease D [Klebsiella sp. 1_1_55] gi|206566025|gb|ACI07801.1| ribonuclease D [Klebsiella pneumoniae 342] gi|289778261|gb|EFD86258.1| ribonuclease D [Klebsiella sp. 1_1_55] Length = 375 Score = 204 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 3/168 (1%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 +DTE + +L ++QL G I + + + +L+++ K H G Sbjct: 27 LDTEFVRTRTYYPQLGLLQLFDGTQVSLIDPLTIS--DWAPMRELLLNQDVTKYLHAGSE 84 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 D+ V F + +P+ T+I + G ++E G+ + K++ +DW A Sbjct: 85 DLEVFLNAFSLMPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVALDKSESRTDWLARP 143 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 L++ Q +YAA+DV +L + Q + R G A C + R + Sbjct: 144 LTERQCEYAAADVWYLLPIASQLMAETDRAGWLSAALDECRLMQQRRQ 191 >gi|288934742|ref|YP_003438801.1| ribonuclease D [Klebsiella variicola At-22] gi|288889451|gb|ADC57769.1| ribonuclease D [Klebsiella variicola At-22] Length = 371 Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 3/168 (1%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 +DTE + +L ++QL G I + + + +L+++ K H G Sbjct: 23 LDTEFVRTRTYYPQLGLLQLFDGTQVSLIDPLTIS--DWAPMRELLLNQDVTKYLHAGSE 80 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 D+ V F + +P+ T+I + G ++E G+ + K++ +DW A Sbjct: 81 DLEVFLNAFSLMPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVALDKSESRTDWLARP 139 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 L++ Q +YAA+DV +L + Q + R G A C + R + Sbjct: 140 LTERQCEYAAADVWYLLPIASQLMAETDRAGWLSAALDECRLMQQRRQ 187 >gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2] gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2] Length = 377 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 6/196 (3%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ ++ D+ A C + +A D E + ++++C+VQ++ + + + ++ Sbjct: 5 TLIENDEDLAARCDLLKTEKRLAFDLEADSMHHFKEKVCLVQMADPNDSFVVDPLS--ID 62 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + L + D K+FH FDI L F + V +F T+IA R L Sbjct: 63 DLSVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNNLFDTEIACRFLGIQKR--SLAA 120 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L++ + + K Q +DWS LS E + Y+ +DV +L L ++L+ GR A Sbjct: 121 LLEKHFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLELSDILKKRLEDEGRLAWAE 180 Query: 182 SCCNFLMDRAELDLLG 197 L R D G Sbjct: 181 EEFE-LQTRVRHDNNG 195 >gi|194366535|ref|YP_002029145.1| ribonuclease D [Stenotrophomonas maltophilia R551-3] gi|194349339|gb|ACF52462.1| ribonuclease D [Stenotrophomonas maltophilia R551-3] Length = 358 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 4/205 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M T ++ A R I +DTE + +L +VQ++ G + I + G Sbjct: 1 MATWITTPTELDAYFQQRP-SRIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGM 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L DE K+ H D+ + GV RP+F T+I + L G + Sbjct: 60 --AEALAPWLADESIIKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLAGIGG-GMGYQ 116 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + E+ G+ ++K + SDW LS+ QLQYAA DV HL A+ KLQ LGR Sbjct: 117 KLVAEITGVALAKGETRSDWMRRPLSESQLQYAADDVEHLFAMHDAIDAKLQALGRQQWL 176 Query: 181 TSCCNFLMDRAELDLLGWENVDIFS 205 L+ D W ++ + S Sbjct: 177 HDDGERLLASVANDEDRWPHLSMRS 201 >gi|114775667|ref|ZP_01451235.1| ribonuclease D [Mariprofundus ferrooxydans PV-1] gi|114553778|gb|EAU56159.1| ribonuclease D [Mariprofundus ferrooxydans PV-1] Length = 398 Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 6/204 (2%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I + A + VDTE ++Q+ G+G +I + A Sbjct: 9 INTPDQLRQAAATMAECQVLCVDTEFHRESTFYPEFALLQIY-GNGQCWVIDPITIKDLA 67 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P ++++ K+FH R DI ++F G P+F T++A+ L Y Q G + + Sbjct: 68 PV-WDIMLNPAILKVFHAARQDIEIIFNEAGGLPLPLFDTQVAAALL-GYGQQVGFGNLV 125 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + + + K + +DW A L+ +Q+ YAA DV+ L + E+L+ R+ Sbjct: 126 QRITKKLLPKGESFTDWKARPLTKKQMAYAADDVIWLMPVFQHLKERLEAAKRTQWLQEE 185 Query: 184 CNFLMDRAEL---DLLGWENVDIF 204 L D + V F Sbjct: 186 QQTLCSPETYQPNDADAFWRVKGF 209 >gi|88658362|ref|YP_507121.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas] gi|88599819|gb|ABD45288.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas] Length = 387 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 3/177 (1%) Query: 11 IPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + + IAVDTE + +LC++Q++ G +I + A + L + Sbjct: 12 LCNQLLVLQPKFIAVDTEFVRSSSEYYPKLCLIQIAYGKEQF-VIDVLAKDMDLSVLGHI 70 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 +E K+FH R DI L F P+F T+IA+ Y N G +++ LGI Sbjct: 71 FYNESIIKVFHDCRQDIDALLTKFPEIPSPIFDTQIAAMFCCCYDNAVGYSKLVEQFLGI 130 Query: 130 NISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 ++ K + + S+W+ LS +++QYA +DV++L+ L L G+ N Sbjct: 131 SLDKLSLKRSNWALRPLSADKIQYALNDVIYLYELYQILYNNLLDAGKLPWFLEEMN 187 >gi|73667317|ref|YP_303333.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] gi|72394458|gb|AAZ68735.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] Length = 386 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 3/169 (1%) Query: 19 YVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 IA+DTE + RLC++Q++ G +I + A + L +L ++ K Sbjct: 20 QPKFIAIDTEFIRNSSEYYPRLCLMQVAYGREQF-VIDVLASDMDLSPLNSILYNKNIVK 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-AQQ 136 +FH R DI L F P+F T++A+ Y N G +++ LGI++ K + + Sbjct: 79 VFHDCRQDIDALLTKFPKIPNPIFDTQVAAMFCYCYENAVGYSRLVEQFLGISLDKLSLK 138 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 S+W LS +++QYA +DV++LH L + L G+ + Sbjct: 139 RSNWMLRPLSPDKIQYALNDVIYLHELYQILYDNLVDSGKLLWFLEEMD 187 >gi|68171541|ref|ZP_00544920.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa] gi|67999046|gb|EAM85718.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa] Length = 387 Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 3/177 (1%) Query: 11 IPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + + IAVDTE + +LC++Q++ G +I + A + L + Sbjct: 12 LCNQLLVLQPKFIAVDTEFVRSSSEYYPKLCLIQIAYGKEQF-VIDVLAKDMDLSVLGHI 70 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 +E K+FH R DI L F P+F T+IA+ Y N G +++ LGI Sbjct: 71 FYNESIIKVFHDCRQDIDALLTKFPEIPSPIFDTQIAAMFCCCYDNAVGYSKLVEQFLGI 130 Query: 130 NISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 ++ K + + S+W+ LS +++QYA +DV++L+ L L G+ N Sbjct: 131 SLDKLSLKRSNWALRPLSADKIQYALNDVIYLYELYQILYNNLLDAGKLPWFLEEMN 187 >gi|326795603|ref|YP_004313423.1| ribonuclease D [Marinomonas mediterranea MMB-1] gi|326546367|gb|ADZ91587.1| ribonuclease D [Marinomonas mediterranea MMB-1] Length = 383 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 3/168 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 ++ IAVDTE L ++Q+S G+ V I L ++V+ K+F Sbjct: 29 LNVIAVDTEFLRRTTYYPITGLIQISEGEKAVLIDP--QTITEWAPLKDLMVNLDVMKVF 86 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ V GV P + T+I ++ L I ++K + SD Sbjct: 87 HACSEDLDVFDRLLGVLPTPFYDTQIGEAYANGQW-SVSYVKLIQAYLSIEVAKDETRSD 145 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 W+ L++ Q +YAA DVV+L + Q E LQ+ D A C+ L Sbjct: 146 WTVRPLTEAQKRYAALDVVYLAKVYPQQIEMLQKKNMLDWALEDCDTL 193 >gi|78048167|ref|YP_364342.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036597|emb|CAJ24288.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 363 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 3/194 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M +H ++ A I +DTE + +L +VQ++ GD + I + G Sbjct: 1 MPHWIIHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGDEILLIDPLIPGM 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L K+ H D+ G RP+F T+IA+ L + Sbjct: 61 NAA--LKEWLTAPDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMG-YQ 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ T +L GR + Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEWL 177 Query: 181 TSCCNFLMDRAELD 194 L+ E D Sbjct: 178 AEDAERLLATVEHD 191 >gi|28199772|ref|NP_780086.1| ribonuclease D [Xylella fastidiosa Temecula1] gi|182682522|ref|YP_001830682.1| ribonuclease D [Xylella fastidiosa M23] gi|28057893|gb|AAO29735.1| ribonuclease D [Xylella fastidiosa Temecula1] gi|182632632|gb|ACB93408.1| ribonuclease D [Xylella fastidiosa M23] Length = 362 Score = 200 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 4/201 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D A R I +DTE + L +VQ++ GD + + + G +A Sbjct: 5 IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIGDEILLVDPLVPGMTDALG 64 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L KI H D+ Y GV RP+F T+I G + + + Sbjct: 65 LW--LAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAK 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + + K + SDW L+ QL YAA+DV +L AL TE+L + RS C Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181 Query: 186 FLMDRAE-LDLLGWENVDIFS 205 L D E + W ++ I S Sbjct: 182 RLTDNIEQNENERWPHLAIRS 202 >gi|294626013|ref|ZP_06704623.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599683|gb|EFF43810.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 363 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 3/194 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H ++ A I +DTE + +L +VQ++ G+ + I + G Sbjct: 1 MPHWITHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L+ K+ H D+ G RP+F T+IA+ L + Sbjct: 61 NAA--LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMG-YQ 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ + T +L GR + Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLTEQGRLEWL 177 Query: 181 TSCCNFLMDRAELD 194 + L+ E D Sbjct: 178 AEDADRLLATVEHD 191 >gi|325928069|ref|ZP_08189282.1| ribonuclease D [Xanthomonas perforans 91-118] gi|325541567|gb|EGD13096.1| ribonuclease D [Xanthomonas perforans 91-118] Length = 363 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 3/194 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M +H ++ A I +DTE + +L +VQ++ GD + I + G Sbjct: 1 MPHWIIHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGDEILLIDPLIPGM 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L K+ H D+ G RP+F T+IA+ L + Sbjct: 61 NAA--LKEWLTATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMG-YQ 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ T +L GR + Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEWL 177 Query: 181 TSCCNFLMDRAELD 194 L+ E D Sbjct: 178 AEDAERLLATVEHD 191 >gi|21243147|ref|NP_642729.1| ribonuclease D [Xanthomonas axonopodis pv. citri str. 306] gi|21108668|gb|AAM37265.1| ribonuclease D [Xanthomonas axonopodis pv. citri str. 306] Length = 363 Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 3/194 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H ++ A I +DTE + +L +VQ++ G+ + I + G Sbjct: 1 MPLWITHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L+ K+ H D+ G RP+F T+IA+ L + Sbjct: 61 NAA--LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMG-YQ 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ + T +L GR + Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLAEQGRLEWL 177 Query: 181 TSCCNFLMDRAELD 194 + L+ E D Sbjct: 178 AEDADRLLATVEHD 191 >gi|71278230|ref|YP_270192.1| ribonuclease D [Colwellia psychrerythraea 34H] gi|71143970|gb|AAZ24443.1| ribonuclease D [Colwellia psychrerythraea 34H] Length = 379 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 3/172 (1%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 +A+DTE + +L ++Q+ G+ I +A + +L +E K+ Sbjct: 21 KAKVLAIDTEFVRTRTLYAKLGLLQVCDGEQLALIDPLA--IDDLAPFWALLTNENITKV 78 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ V + + ++I + G +K I + K++ + Sbjct: 79 LHACSEDLEVFLTAGNCKPVNLIDSQIMMSFL-GHGLSLGYAAMVKHFTDIELDKSESRT 137 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 DW+ L+++QL YA++DV HL + + ++ + G A ++D+ Sbjct: 138 DWTKRPLTEKQLDYASADVDHLFDIYPKLLAEITQAGFLAYAQIETQSMIDK 189 >gi|15837353|ref|NP_298041.1| ribonuclease D [Xylella fastidiosa 9a5c] gi|9105641|gb|AAF83561.1|AE003916_15 ribonuclease D [Xylella fastidiosa 9a5c] Length = 362 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 6/203 (2%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D A R I +DTE + L +VQ++ D + + + G +A Sbjct: 5 IQHPDTLATWWDRKPTRIGMDTEFIRERTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L KI H D+ Y GV RP+F T+I G + + Sbjct: 65 LW--LAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAT 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + + K + SDW L+ QL YAA+DV +L AL TE+L + RS C Sbjct: 122 VTNVALEKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181 Query: 186 FLMDRAE-LDLLGWENVDIFSHS 207 L D E + W ++ I HS Sbjct: 182 RLTDNIEQNENERWPHLAI--HS 202 >gi|78485923|ref|YP_391848.1| 3'-5' exonuclease [Thiomicrospira crunogena XCL-2] gi|78364209|gb|ABB42174.1| ribonuclease D [Thiomicrospira crunogena XCL-2] Length = 385 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 4/187 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + D+ A C + IA+DTE + L ++Q+ DG II A + + Sbjct: 5 IINQQADLDAFCELLKTCPWIALDTEFVRTDTYFSILSLIQIQTHDGQAAIIDPLAIE-D 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L ++ + K+FH R DI VL+ G ++ T+IA + + + GL Sbjct: 64 LTALWSIISNPNVRKVFHSARQDIEVLYQVSGQMPISIYDTQIACLFLQ-HGDLAGLARV 122 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +K L + K Q ++W L+D+QL+YA +DV +L L + +L ++ L Sbjct: 123 VKAELNFTLEKDQTRTNWQQRPLTDKQLEYAINDVRYLAPLYEKLQAELTEQQQAAL-EE 181 Query: 183 CCNFLMD 189 L++ Sbjct: 182 DFQALLN 188 >gi|332290211|ref|YP_004421063.1| ribonuclease D [Gallibacterium anatis UMN179] gi|330433107|gb|AEC18166.1| ribonuclease D [Gallibacterium anatis UMN179] Length = 377 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 14/207 (6%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + + C AR+ +A+DTE + +L ++QL G I + + Sbjct: 6 IIQQDAQLKQLCEQARHYSVVALDTEFERVRSYYAKLGLIQLYFGADVALIDPLT--ITD 63 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + +L D KI H DI + F P+ T+I + + G Sbjct: 64 WQPFIALLADANVLKILHASGEDIEIFHQQFQQIPTPMLDTQIMANFL-GFPQSAGFALL 122 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + L + + K +DW LS+ QL YAA+DV +L + + + Sbjct: 123 AQHYLQVELDKKASRTDWLKRPLSERQLNYAAADVYYLLPIYQKMAATMASSEWKTAIQQ 182 Query: 183 CCNFL---------MDRAELDL-LGWE 199 C ++A LD+ W Sbjct: 183 ECKLFAQKRCRQISPEKAYLDIGNAWR 209 >gi|294666468|ref|ZP_06731711.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603774|gb|EFF47182.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 363 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 3/194 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H ++ A I +DTE + +L +VQ++ G+ + I + G Sbjct: 1 MPHWITHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L+ K+ H D+ G RP+F T+IA+ L + Sbjct: 61 NAA--LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMG-YQ 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ + T +L GR + Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLTEQGRLEWQ 177 Query: 181 TSCCNFLMDRAELD 194 L+ E D Sbjct: 178 AEDAERLLATVEHD 191 >gi|15895183|ref|NP_348532.1| ribonuclease D [Clostridium acetobutylicum ATCC 824] gi|15024889|gb|AAK79872.1|AE007698_6 Ribonuclease D [Clostridium acetobutylicum ATCC 824] gi|325509325|gb|ADZ20961.1| Ribonuclease D [Clostridium acetobutylicum EA 2018] Length = 205 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 107/208 (51%), Gaps = 7/208 (3%) Query: 1 MTTIRVHEGDIPAEC---AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 M I++ + D+ IA+DTET GL P +D+LC++Q+ + I I Sbjct: 1 MYNIKLCKLDLDNNDKRYILNNCKYIAIDTETTGLDPLKDKLCLIQICAKEK---IFLIK 57 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQ 116 N NL+G+L K KIFH+ FD+ L + + V CTKIA++L + Sbjct: 58 YNNSNQKNLIGILQCSKIIKIFHHANFDLRFLMKNLKIYNINNVVCTKIAAKLLNGIEIE 117 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + LK L++ L INI K Q S+WSA++L+ EQ+QYA DV++L L +L + Sbjct: 118 NSLKKLLRKYLNINIDKKLQKSNWSAENLTKEQIQYATYDVIYLEKLWRALKAELIKANL 177 Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIF 204 LA C +L A L G EN+ I+ Sbjct: 178 YSLAEECFKYLPTNAILHNRGIENIFIY 205 >gi|94500848|ref|ZP_01307374.1| ribonuclease D [Oceanobacter sp. RED65] gi|94426967|gb|EAT11949.1| ribonuclease D [Oceanobacter sp. RED65] Length = 382 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 11/198 (5%) Query: 1 MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIA 57 M I H D+ + C + IA+D+E + + +L ++Q++ G T VD +RI Sbjct: 1 MKYIDTH-IDLASACEHWNTCNRIALDSEFMRVDTFYPKLALIQINDGSETYLVDPVRIN 59 Query: 58 AGQKNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111 + P L+ +L ++ K+ H D + GV P+ T+ A+ + Sbjct: 60 RAHRGEPREEVWGPLIEVLSNQNVVKVLHSPSEDFDAFYSNLGVVPSPIIDTQWAAAMAS 119 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 G + +K+LL I++ K SDW L+DEQ+ YAA DV HL + + +L Sbjct: 120 IDGI-MGYQKLVKQLLDIDLEKGATRSDWLQRPLTDEQIHYAADDVEHLLEITKRLETQL 178 Query: 172 QRLGRSDLATSCCNFLMD 189 GR C +++ Sbjct: 179 VTQGRWTWLLEDCERMVE 196 >gi|71901132|ref|ZP_00683238.1| Ribonuclease D [Xylella fastidiosa Ann-1] gi|71729096|gb|EAO31221.1| Ribonuclease D [Xylella fastidiosa Ann-1] Length = 362 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 4/201 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D A R I +DTE + L +VQ++ D + + + G +A Sbjct: 5 IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L KI H D+ Y GV RP+F T+I G + + + Sbjct: 65 LW--LAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVTK 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + + K + SDW L+ QL YAA+DV +L AL TE+L + RS C Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181 Query: 186 FLMDRAE-LDLLGWENVDIFS 205 L D E + W ++ I S Sbjct: 182 RLTDNIEQNENERWPHLAIRS 202 >gi|329898076|ref|ZP_08272286.1| Ribonuclease D [gamma proteobacterium IMCC3088] gi|328920975|gb|EGG28399.1| Ribonuclease D [gamma proteobacterium IMCC3088] Length = 373 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 4/176 (2%) Query: 9 GDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 D+ A+ + A+ +DTE + + +VQL+ + +A +A L Sbjct: 13 DDLERTVASYQSNQAVVLDTEFVRERTYYPKPALVQLAGAGHISLVDPVAV--TDASALS 70 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L E+ K+ H G D+ V G ++ F T++A+ L Y G ++ ++ L Sbjct: 71 SLLESERTLKVVHSGSEDLEVFQAWLGCPIKGWFDTQVAAALL-GYGYAIGYRNIVETFL 129 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 G + K + SDW LSD QLQYA +DV++L + + ++ + LGR + Sbjct: 130 GEELDKGETRSDWLQRPLSDSQLQYAIADVLYLEPVFERLYQEAEALGRVEWVLEE 185 >gi|289665658|ref|ZP_06487239.1| ribonuclease D [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 210 Score = 197 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 3/194 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H ++ A I +DTE + +L +VQL+ G+ + I + G Sbjct: 1 MPHWITHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQLAIGEEILLIDPLIPGM 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L K+ H D+ GV RP+F T+IA+ L + Sbjct: 61 NEA--LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ + T +L R Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQDRLGWL 177 Query: 181 TSCCNFLMDRAELD 194 L+ E D Sbjct: 178 AEDAERLLATVEHD 191 >gi|71275157|ref|ZP_00651444.1| Ribonuclease D [Xylella fastidiosa Dixon] gi|71163966|gb|EAO13681.1| Ribonuclease D [Xylella fastidiosa Dixon] Length = 362 Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 4/201 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D A R I +DTE + L +VQ++ D + + + G +A Sbjct: 5 IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L KI H D+ Y GV RP+F T+I G + + + Sbjct: 65 LW--LAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAK 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + + K + SDW L+ QL YAA+DV +L L TE+L + RS C Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCT 181 Query: 186 FLMDRAE-LDLLGWENVDIFS 205 L D E + W ++ I S Sbjct: 182 RLTDNIEQNENERWPHLAIRS 202 >gi|170731148|ref|YP_001776581.1| ribonuclease D [Xylella fastidiosa M12] gi|167965941|gb|ACA12951.1| ribonuclease D [Xylella fastidiosa M12] Length = 362 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 4/201 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D A R I +DTE + L +VQ++ D + + + G +A Sbjct: 5 IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L KI H D+ Y GV RP+F T+I G + + + Sbjct: 65 LW--LAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAK 121 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + + + K + SDW L+ QL YAA+DV +L L TE+L + RS C Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCT 181 Query: 186 FLMDRAE-LDLLGWENVDIFS 205 L D E + W ++ I S Sbjct: 182 RLTDNIEQNENERWPHLAIRS 202 >gi|58582365|ref|YP_201381.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426959|gb|AAW75996.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331] Length = 416 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 3/189 (1%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 H ++ A I +DTE + +L +VQ++ G+ + I + G A Sbjct: 59 THPSELTDRLQAARPARIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 116 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L L K+ H D+ GV RP+F T+IA+ L + ++E Sbjct: 117 LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQKLVQE 175 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + G ++K + SDW LS QL+YAA DV +L A+ + T +L R Sbjct: 176 VTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLGWLAEDAE 235 Query: 186 FLMDRAELD 194 L+ E D Sbjct: 236 RLLATVEHD 244 >gi|90020985|ref|YP_526812.1| ribonuclease D [Saccharophagus degradans 2-40] gi|89950585|gb|ABD80600.1| ribonuclease D [Saccharophagus degradans 2-40] Length = 386 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 5/170 (2%) Query: 13 AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 EC R+ +AVDTE + ++Q++ G+ + + +L Sbjct: 20 EECCERWQSKKLLAVDTEFMRSQTYYPIAGLIQVNDGEANYLLDP--TTIDDFSPFAEIL 77 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 VD+ K H D+ V +++FG + +F T+IA G ++ +LG+ Sbjct: 78 VDDDIIKAIHSCSEDLEVFYHSFGFLPQRLFDTQIAGAFVN-LGYSMGFARMVQGVLGVE 136 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + K + SDW LS Q YAA DV +L+ L + +L+ R D Sbjct: 137 LPKTETRSDWLQRPLSVAQKHYAALDVEYLYLLAGKLLTELKAKERLDWV 186 >gi|269959116|ref|YP_003328905.1| ribonuclease D [Anaplasma centrale str. Israel] gi|269848947|gb|ACZ49591.1| ribonuclease D [Anaplasma centrale str. Israel] Length = 389 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 6/182 (3%) Query: 9 GDIPAECAA---RYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D+ CA +++AVDTE + RLC++Q++ G ++ + + + Sbjct: 11 SDLARFCAQILRDRPESLAVDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLS 69 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + DE K+FH R D+ L F +P+F T+ AS L + N G ++ Sbjct: 70 PLQEIFDDEGICKVFHDCRQDLDALSQRFLRLPKPIFDTQTASMLCEYHDNSVGYSKLVE 129 Query: 125 ELLGINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + LG+ ++K + DWS LS+ +++YA DV +LH L + L GR Sbjct: 130 QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYGVLLDILVAKGRLTWFREE 189 Query: 184 CN 185 Sbjct: 190 MA 191 >gi|330504002|ref|YP_004380871.1| ribonuclease D [Pseudomonas mendocina NK-01] gi|328918288|gb|AEB59119.1| ribonuclease D [Pseudomonas mendocina NK-01] Length = 377 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 8/202 (3%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + CAA + + +A+DTE + + ++Q+S GDG I + + Sbjct: 9 LDDAGLAEHCAAWQALPFVALDTEFMRVDTFYPIAGLLQVSGGDGAYLIDPLRIS--DWR 66 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L K+ H D+ V G P+F T++A+ G ++ Sbjct: 67 PFAALLEAPNVVKVLHSCSEDLEVFLRLSGSLPAPLFDTQLAAGYLN-LGFSMGYSRLVQ 125 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 LL I + K + SDW LS+ Q++YAA DV+HL + +L + + Sbjct: 126 ALLDIELPKGETRSDWLQRPLSELQVRYAAEDVLHLVEVYRALMARLAPQ-KVEWVLEDG 184 Query: 185 NFLMDRAELDLL---GWENVDI 203 L+ ++ W + Sbjct: 185 AELVANLSREVAPEDAWREAKL 206 >gi|84624243|ref|YP_451615.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576150|ref|YP_001913079.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368183|dbj|BAE69341.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520602|gb|ACD58547.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A] Length = 363 Score = 196 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 3/194 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M +H ++ A I +DTE + +L +VQ++ G+ + I + G Sbjct: 1 MPHWIIHPSELTDRLQAARPARIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L K+ H D+ GV RP+F T+IA+ L + Sbjct: 61 NAA--LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ + T +L R Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLGWL 177 Query: 181 TSCCNFLMDRAELD 194 L+ E D Sbjct: 178 AEDAERLLATVEHD 191 >gi|325277926|ref|ZP_08143467.1| ribonuclease D [Pseudomonas sp. TJI-51] gi|324096941|gb|EGB95246.1| ribonuclease D [Pseudomonas sp. TJI-51] Length = 377 Score = 195 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 4/166 (2%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +AVDTE + + + ++Q+ G I + G N L +L + K Sbjct: 22 QQLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLAELLENSGVVK 79 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ VL G +P+F T++A+ G ++E+LGI++ K + Sbjct: 80 VLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLN-LGFSMGYSRLVQEVLGIDLPKGETR 138 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW LSD Q+ YAA D VHL L +L + Sbjct: 139 SDWLQRPLSDTQVSYAAEDAVHLAELFTVLRPRLSD-DKYAWVLED 183 >gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1] gi|295313032|ref|ZP_06803730.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1] gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica FTNF002-00] Length = 363 Score = 195 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQL+ + I + L + D+ Sbjct: 16 LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ + Q LK LKE+L I I K Q Sbjct: 74 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW L+ QL YA DV +L L+ ++L + D Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179 >gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3] gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3] Length = 382 Score = 195 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 5/177 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 V +AVD E L +++C++Q+ I +A + +L D Sbjct: 25 LERVPVVAVDLEADSLHHFTEKVCLIQIGVNGDAFLIDPLALS--DLSSLKPFFADPGVI 82 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H +D+ L+ FG+ + +F ++IASR GL D + G+ + K + Sbjct: 83 KVLHGADYDVRSLYRDFGITITGLFDSEIASRFLG--VQSTGLNDVVNRRFGVTMDKGCR 140 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 DW+ L ++ L YAA DV +L L Q +LQ++GR++ C L+ R Sbjct: 141 KQDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQMGRAEWVAEECE-LLSRVRY 196 >gi|78224579|ref|YP_386326.1| 3'-5' exonuclease [Geobacter metallireducens GS-15] gi|78195834|gb|ABB33601.1| 3'-5' exonuclease [Geobacter metallireducens GS-15] Length = 382 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A D E + ++++C++Q + G I+ A AP L + + K+FH Sbjct: 28 PYVACDLEADSMHHYQEKVCLIQFTVP-GLAAIVDPLAVADLAP-LAPVFANPSIRKVFH 85 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +DI L FG+ V +F T IA + + GL L++ G+ + K Q +DW Sbjct: 86 GADYDIRSLHRDFGIEVNNLFDTMIACQFLGE--REFGLAAVLRKRFGVELDKQYQRADW 143 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S L+ ++YAA D L L + +L+ GR C L Sbjct: 144 SRRPLTAGMIEYAAKDTTLLIELCGRLEAELREKGRIGWVEEECALL 190 >gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis WY96-3418] gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis WY96-3418] Length = 364 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQL+ + I + L + D+ Sbjct: 16 LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ + Q LK LKE+L I I K Q Sbjct: 74 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW L+ QL YA DV +L L+ ++L + D Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179 >gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS] gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18] gi|167009819|ref|ZP_02274750.1| ribonuclease III [Francisella tularensis subsp. holarctica FSC200] gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257] gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS] gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18] gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257] Length = 364 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQL+ + I + L + D+ Sbjct: 16 LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ + Q LK LKE+L I I K Q Sbjct: 74 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW L+ QL YA DV +L L+ ++L + D Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179 >gi|152996550|ref|YP_001341385.1| ribonuclease D [Marinomonas sp. MWYL1] gi|150837474|gb|ABR71450.1| ribonuclease D [Marinomonas sp. MWYL1] Length = 384 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 3/168 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + IAVDTE + ++Q+S GD V I ++ L ++VD K+F Sbjct: 34 LPVIAVDTEFIRRTTYFPITGLIQISEGDKAVLIDPLS--IDEWEPLRNLMVDPSVMKVF 91 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ V GV P + T+I + E L I ++K + SD Sbjct: 92 HACSEDLDVFDRLLGVLPTPFYDTQIGEAYASAQW-SLSYVKLIHEYLQIEVAKDETRSD 150 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 W L+D Q +YAA DVV+L + +L+ C+ L Sbjct: 151 WVQRPLTDAQKRYAALDVVYLAKVYPMQIARLEAKNMLGWVMEDCDSL 198 >gi|166711789|ref|ZP_02242996.1| ribonuclease D [Xanthomonas oryzae pv. oryzicola BLS256] Length = 363 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 3/194 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H ++ A I +DTE + +L +VQ++ G+ + I + Sbjct: 1 MPHWITHPSELTDRLQAARPARIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPSM 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L K+ H D+ GV RP+F T+IA+ L + Sbjct: 61 NAA--LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ + T +L R Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLGWL 177 Query: 181 TSCCNFLMDRAELD 194 L+ E D Sbjct: 178 AEDAERLLATVEHD 191 >gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147] gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147] Length = 364 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQL+ + I + L + D+ Sbjct: 16 LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ + Q LK LKE+L I I K Q Sbjct: 74 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW L+ QL YA DV +L L+ ++L + D Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179 >gi|146306804|ref|YP_001187269.1| ribonuclease D [Pseudomonas mendocina ymp] gi|145575005|gb|ABP84537.1| ribonuclease D [Pseudomonas mendocina ymp] Length = 377 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 5/174 (2%) Query: 11 IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + CAA R + +A+DTE + + ++Q+S GD I + + L + Sbjct: 14 LAEHCAAWRALPFVALDTEFMRVDTFYPIAGLLQVSGGDKAYLIDPL--CIDDWRPLAEL 71 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L + K+ H D+ V G P+F T++A+ G ++ LLGI Sbjct: 72 LQAQTVVKVLHSCSEDLEVFLRLTGSLPVPLFDTQVAAGYLNLGF-SMGYSRLVQTLLGI 130 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + K + SDW LS Q+ YAA DV+HL + T++L + Sbjct: 131 ELPKGETRSDWLQRPLSATQISYAAEDVLHLVEVYQALTQRLSAE-KHAWVLED 183 >gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549] gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549] Length = 364 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQL+ + I + L + D+ Sbjct: 16 LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDII 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ + Q LK LKE+L I I K Q Sbjct: 74 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW L+ QL YA DV +L L+ ++L + D Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179 >gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella tularensis subsp. novicida U112] gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella tularensis subsp. novicida FTE] gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG] gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112] gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE] gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG] Length = 364 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQL+ + I + L + D+ Sbjct: 16 LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLE--DLEFKKLKEIFEDKDII 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ + Q LK LKE+L I I K Q Sbjct: 74 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW L+ QL YA DV +L L+ ++L + D Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179 >gi|307578800|gb|ADN62769.1| ribonuclease D [Xylella fastidiosa subsp. fastidiosa GB514] Length = 339 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 4/181 (2%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 DTE + L +VQ++ GD + + + G +A L L KI H D Sbjct: 2 DTEFIREGTFWPELALVQIAIGDEILLVDPLVPGMTDALGLW--LAAPNVIKIMHSASED 59 Query: 86 IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDL 145 + Y GV RP+F T+I G + + ++ + + K + SDW L Sbjct: 60 LIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAKVTNVELGKGETRSDWMHRPL 118 Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE-LDLLGWENVDIF 204 + QL YAA+DV +L AL TE+L + RS C L D E + W ++ I Sbjct: 119 TPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCTRLTDNIEQNENERWPHLAIR 178 Query: 205 S 205 S Sbjct: 179 S 179 >gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548] gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548] Length = 364 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQL+ + I + L + D+ Sbjct: 16 LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDII 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ + Q LK LKE+L I I K Q Sbjct: 74 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW L+ QL YA DV +L L+ ++L + D Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179 >gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4] gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198] gi|224456967|ref|ZP_03665440.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987] gi|254370381|ref|ZP_04986386.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987] gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4] gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198] gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp. tularensis FSC033] gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987] gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598] Length = 364 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQL+ + I + L + D+ Sbjct: 16 LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ + Q LK LKE+L I I K Q Sbjct: 74 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW L+ QL YA DV +L L+ ++L + D Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179 >gi|254994696|ref|ZP_05276886.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi] Length = 386 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 6/182 (3%) Query: 9 GDIPAECAA---RYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 ++ CA +++A+DTE + RLC++Q++ G ++ + + + Sbjct: 11 NELAQFCAQILRDRPESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLS 69 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + DE K+FH R D+ L F RP+F T+ AS L + N G ++ Sbjct: 70 PLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVE 129 Query: 125 ELLGINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + LG+ ++K + DWS LS+ +++YA DV +LH L L GR Sbjct: 130 QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKGRLTWFLEE 189 Query: 184 CN 185 Sbjct: 190 ME 191 >gi|88705065|ref|ZP_01102777.1| ribonuclease D [Congregibacter litoralis KT71] gi|88700760|gb|EAQ97867.1| ribonuclease D [Congregibacter litoralis KT71] Length = 370 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 3/171 (1%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A + D IAVDTE + + ++QL D I + + L +L D Sbjct: 15 ALASLAGADEIAVDTEFMRRNSYYPHIALLQLCTDDHAWLIDPLTISNLDG--LRALLTD 72 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+ H D+ V + GV P+ T+ A+ L G + +KELLG+ + Sbjct: 73 SACIKVLHSCSEDLEVFRHWLGVLPSPLVDTQRATALLGKGF-GLGYRALVKELLGVELD 131 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 K + SDW LS+ Q YAA DV+ L E + GR Sbjct: 132 KGETRSDWLKRPLSESQCHYAALDVLELVPAWRILRELAEEQGRMQWVLDE 182 >gi|313497620|gb|ADR58986.1| Rnd [Pseudomonas putida BIRD-1] Length = 377 Score = 194 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 4/165 (2%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +AVDTE + + + ++Q+ G I + G N L +L D K+ Sbjct: 23 QLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLADLLEDSGVVKV 80 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ VL G +P+F T++A+ G ++E+LGI + K + S Sbjct: 81 LHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGIELPKGETRS 139 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 DW LS+ Q+ YAA D VHL L +L + Sbjct: 140 DWLQRPLSETQVSYAAEDAVHLAELFSVLRPRLSD-DKYAWVLED 183 >gi|148546540|ref|YP_001266642.1| ribonuclease D [Pseudomonas putida F1] gi|148510598|gb|ABQ77458.1| ribonuclease D [Pseudomonas putida F1] Length = 377 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 4/165 (2%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +AVDTE + + + ++Q+ G I + G N L +L D K+ Sbjct: 23 QLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLADLLEDSGVVKV 80 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ VL G +P+F T++A+ G ++E+LGI + K + S Sbjct: 81 LHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGIELPKGETRS 139 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 DW LS+ Q+ YAA D VHL L +L + Sbjct: 140 DWLQRPLSETQVSYAAEDAVHLAELFTVLRPRLSD-DKYAWVLED 183 >gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1] Length = 364 Score = 194 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQL+ + I + L + D+ Sbjct: 16 LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ + Q LK LKE+L I I K Q Sbjct: 74 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW L+ QL YA DV +L L+ ++L + D Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLVKSEYQDFFEQE 179 >gi|226945355|ref|YP_002800428.1| ribonuclease D protein [Azotobacter vinelandii DJ] gi|226720282|gb|ACO79453.1| ribonuclease D protein [Azotobacter vinelandii DJ] Length = 375 Score = 194 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 4/170 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + + CA R + +A+DTE + + + +VQ+ G I + G + L Sbjct: 11 DASLASHCARWRQLPFVALDTEFVRVDTFYPQTGLVQVGDGRSAYLIDPLDIG--DWRPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ H D+ VL G P+F T++A+ G ++ + Sbjct: 69 AALLEDPAVVKVLHACSEDLEVLLRLTGSLPLPLFDTQLAAAYLN-LGFSMGYSRLVQAV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LGI + K + SDW LS+ Q++YAA D VHL L + +L R Sbjct: 128 LGIELPKGETRSDWLQRPLSELQIRYAAEDAVHLAELYVALGARLAEDKR 177 >gi|241668633|ref|ZP_04756211.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 364 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 6/185 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQ++ + I + + L + D + Sbjct: 16 LKSTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLE--DLDFSKLKDIFEDTNIQ 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ T + Q LK LK++L I + K Q Sbjct: 74 KIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQS-QISLKALLKDILDIEMEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 SDW LS +Q YA DV HL ++ KL + L+D + + Sbjct: 133 FSDWRKRPLSQKQFDYALKDVEHLIEIKYHLESKLNQTDYKQYFYEE---LLDIQKTEFN 189 Query: 197 GWENV 201 EN+ Sbjct: 190 TVENI 194 >gi|26991275|ref|NP_746700.1| ribonuclease D [Pseudomonas putida KT2440] gi|24986330|gb|AAN70164.1|AE016655_9 ribonuclease D [Pseudomonas putida KT2440] Length = 377 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 4/165 (2%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +AVDTE + + + ++Q+ G I + G N L +L D K+ Sbjct: 23 QLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLADLLEDSAVVKV 80 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ VL G +P+F T++A+ G ++E+LGI + K + S Sbjct: 81 LHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGIELPKGETRS 139 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 DW LS+ Q+ YAA D VHL L +L + Sbjct: 140 DWLQRPLSETQVSYAAEDAVHLAELFTVLRPRLSD-DKYAWVLED 183 >gi|256372386|ref|YP_003110210.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331] gi|256008970|gb|ACU54537.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331] Length = 396 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 11/198 (5%) Query: 8 EGDIPAECAAR-YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + D+ V IA+DTE RL +VQ++ I + + + Sbjct: 27 QSDLDELVGVGLGVPRIAIDTEFHRERTYYPRLALVQVAIDRRVWLIDPLRV---DLSPI 83 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 ++ E +FH D+ ++ G R R +F T++A G L Sbjct: 84 AAWF--DEVELVFHAADQDLEIIERAVGARPRRIFDTQVAGGFLGAGHASLG--ALLDRY 139 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 LG++ISKA+++SDW L QL YAA+DV +L AL + E+L GR D A S Sbjct: 140 LGVSISKAERTSDWLRRPLEPGQLAYAANDVRYLAALADRLLEELHARGREDWARSEMAR 199 Query: 187 LMDRAELDL---LGWENV 201 L++R D+ L W + Sbjct: 200 LVERRRRDIEPELAWTRI 217 >gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA] gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA] Length = 381 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 4/167 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A D E + ++++C++Q + + +AA + L + + K+FH Sbjct: 28 PIVACDLEADSMHHYQEKVCLIQFAVPGYAAIVDPLAA--PDISPLAPLFANAAIRKVFH 85 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +DI L FG+ V +F T IA +L + GL L++ G+ + K Q +DW Sbjct: 86 GADYDIRSLHRDFGIEVNNLFDTMIACQLLGE--REFGLAAQLRKRFGVELDKQYQRADW 143 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S L+ ++YA D L L Q +L+ GR C L Sbjct: 144 SRRPLTVGMIEYAVKDTTLLIELYRQLVAELEEKGRRGWVEEECELL 190 >gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523] Length = 364 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 3/164 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IAVDTE + LC+VQ++ + I + + L + ++ +KI Sbjct: 19 TSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLK--DLDFSKLKDIFENKDIQKII 76 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H DI ++ F V +F T++A+ + Q LK LKE+L I + K Q SD Sbjct: 77 HSATNDIPIIKRFFNCEVNNIFDTQLAAAFL-GFQTQSSLKTLLKEILDIEMEKESQFSD 135 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 W L+ +QL YA DV +L L+ ++L + Sbjct: 136 WRNRPLTQKQLNYAIKDVEYLIQLKEYLQQQLIKSEYQGFFEQE 179 >gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7] gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7] Length = 393 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 3/165 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R +A+DTE + + +VQ+ G I + ++ +L D + K Sbjct: 42 RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRREWLIDPLLV--RDWGPFAELLEDPRVVK 99 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V G P+F T++A+ + G +KE+L I++ K + Sbjct: 100 VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 158 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 SDW L++ Q++YAA DV HL + L +L R+ L Sbjct: 159 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWLLED 203 >gi|325914723|ref|ZP_08177061.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937] gi|325539000|gb|EGD10658.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937] Length = 364 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 3/194 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H ++ A I +DTE + +L +VQ++ G+ + I + G Sbjct: 1 MPHWITHPSELTERLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L K+ H D+ GV RP+F T+IA+ L + Sbjct: 61 NEA--LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ + + +L L R Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSASQLEYAADDVRYLFAIHDELSRRLTELDRLGWL 177 Query: 181 TSCCNFLMDRAELD 194 L+ E D Sbjct: 178 AEDAERLLATVEHD 191 >gi|77917938|ref|YP_355753.1| RNase D [Pelobacter carbinolicus DSM 2380] gi|77544021|gb|ABA87583.1| RNase D [Pelobacter carbinolicus DSM 2380] Length = 375 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 4/172 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IAVD E L ++++C++Q+S TV + +A ++ L +L D Sbjct: 20 LRDEAVIAVDLEADSLHSYQEKVCLLQISTSTRTVLVDPLAV--EDLAALAPVLADPTIR 77 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KIFH +DI LF F + V+ +F T IA ++ + GL D L + L + + K Q Sbjct: 78 KIFHAADYDIRCLFRDFRIEVQGLFDTMIACQMLGE--KRVGLADVLAKYLDVELDKRYQ 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 +DWS L + + YA D HLH L +L+ +GR A L Sbjct: 136 RADWSKRPLEEGMILYAMEDTCHLHRLTEILEGRLRDMGRLSWAEEEFALLQ 187 >gi|168698136|ref|ZP_02730413.1| ribonuclease D [Gemmata obscuriglobus UQM 2246] Length = 435 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 7/201 (3%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 H + A + + DTE +G R LC+VQ+S + I G + Sbjct: 17 THPAQLAACLSHLAKAPLVGFDTEFVGEDAYRPELCLVQVSTAEQLFVIDPFECGSLDG- 75 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L+D KR + H GR D+ + ++ G VF +IA+ L T G + Sbjct: 76 -FWDLLLDRKRTVVVHAGREDVRMCYFQAGSAPPNVFDVQIAAGLV-GLTYPIGYAGLVH 133 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 +LL + K + +DW L+ Q++YA DV +L + TE+L++ R A Sbjct: 134 DLLRQRMQKGETLTDWRQRPLTPAQVRYAYDDVRYLLPAHRKLTERLKKYRRLPWAEEEF 193 Query: 185 NFLMDRAELD---LLGWENVD 202 + RA D + W + Sbjct: 194 AAAVKRAVADDATIERWRKIK 214 >gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14] gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1] gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14] Length = 374 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R +A+DTE + + +VQ+ G I + ++ +L DE+ K Sbjct: 23 RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 80 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V G P+F T++A+ + G +KE+L I++ K + Sbjct: 81 VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 139 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 SDW L++ Q++YAA DV HL + L +L R+ L Sbjct: 140 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWLLED 184 >gi|87122723|ref|ZP_01078598.1| Ribonuclease D [Marinomonas sp. MED121] gi|86162020|gb|EAQ63310.1| Ribonuclease D [Marinomonas sp. MED121] Length = 387 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 4/187 (2%) Query: 8 EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + D+ C + IAVDTE + ++Q+S G+ V + +A N L Sbjct: 23 DDDLVKWCDHFAALPVIAVDTEFIRRTTFYPITGLIQISEGEHAVLVDPLAIS--NWQPL 80 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + ++ ++ K+FH D+ V GV P + T++A + Sbjct: 81 IDLMTNQSVVKVFHACSEDLEVFDRLLGVVPSPFYDTQVAEAYVSGQW-SLSYVKLILAY 139 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 I I+K + SDW L++ Q +YAA DV+HL + + L + A Sbjct: 140 KNIEIAKDETRSDWLKRPLTEAQKRYAALDVIHLIDVYHTQMDALDKKNMLAWALEDGAA 199 Query: 187 LMDRAEL 193 ++ + L Sbjct: 200 IIHQYRL 206 >gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58] gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192] gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192] gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58] Length = 374 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R +A+DTE + + +VQ+ G I + ++ +L DE+ K Sbjct: 23 RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 80 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V G P+F T++A+ + G +KE+L I++ K + Sbjct: 81 VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 139 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 SDW L++ Q++YAA DV HL + L +L R+ L Sbjct: 140 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWLLED 184 >gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4] gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4] Length = 409 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 4/165 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A D E L +++C++Q+S T I +A + L +L + K+FH Sbjct: 58 LAFDLEADSLHHYTEKVCLIQVSTNSETALIDPLAP--LDLSPLAPILANPAVRKVFHGA 115 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +D+ L+ FG VR +F T IAS+ + GL LK+ G+ + K Q +DWS Sbjct: 116 DYDMRSLYRDFGFEVRNLFDTMIASQFLGE--KEVGLAAALKKRFGVELDKKYQKADWSK 173 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S + ++YA D L L LQ ++L+ GR + Sbjct: 174 RPFSPQMIEYAMKDTSLLIKLYLQLEDELRAKGRLAWVEEESEIV 218 >gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016] gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016] Length = 374 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R +A+DTE + + +VQ+ G I + ++ +L DE+ K Sbjct: 23 RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 80 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V G P+F T++A+ + G +KE+L I++ K + Sbjct: 81 VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 139 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 SDW L++ Q++YAA DV HL + L +L R+ L Sbjct: 140 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWLLED 184 >gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct] Length = 399 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQL+ + I + L + D+ Sbjct: 42 LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 99 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ + Q LK LKE+L I I K Q Sbjct: 100 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 158 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW L+ QL YA DV +L L+ ++L + D Sbjct: 159 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 205 >gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2] Length = 380 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R +A+DTE + + +VQ+ G I + ++ +L DE+ K Sbjct: 29 RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 86 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V G P+F T++A+ + G +KE+L I++ K + Sbjct: 87 VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 145 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 SDW L++ Q++YAA DV HL + L +L R+ L Sbjct: 146 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDTRLSEEKRAWLLED 190 >gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 366 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 6/185 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQ++ + I + + L + D + Sbjct: 16 LKSTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLE--DLDFSKLKDIFEDTNIQ 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ T + Q LK LK++L I + K Q Sbjct: 74 KIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQS-QISLKALLKDILDIEMEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 SDW LS +Q YA DV HL ++ KL + L++ + + Sbjct: 133 FSDWRKRPLSQKQFDYALKDVKHLIEIKYHLESKLNQTDYKQYFYEE---LLEIQKTEFN 189 Query: 197 GWENV 201 EN+ Sbjct: 190 TVENI 194 >gi|170723061|ref|YP_001750749.1| ribonuclease D [Pseudomonas putida W619] gi|169761064|gb|ACA74380.1| ribonuclease D [Pseudomonas putida W619] Length = 377 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 4/166 (2%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R + +A+DTE + + + ++Q+ G+ I + + L +L D K Sbjct: 22 RTLPFVALDTEFMRVDTFYPKAGLIQIGDGERAYLIDPLLIV--DWQPLGELLEDAGVVK 79 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ VL G +P+F T++A+ G ++E+LG+ + K + Sbjct: 80 VLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGLELPKGETR 138 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW LSD Q+ YAA D VHL L +L + Sbjct: 139 SDWLQRPLSDTQVSYAAEDAVHLAELFAALRPRLSD-DKYAWVLED 183 >gi|222474840|ref|YP_002563255.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida] gi|222418976|gb|ACM48999.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida] Length = 386 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 6/182 (3%) Query: 9 GDIPAECAA---RYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 ++ CA +++A+DTE + RLC++Q++ G ++ + + + Sbjct: 11 NELAQFCAQILRDRPESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLS 69 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + DE K+FH R D+ L F RP+F T+ AS L + N G ++ Sbjct: 70 PLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVE 129 Query: 125 ELLGINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + LG+ ++K + DWS LS+ +++YA DV +LH L L R Sbjct: 130 QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKERLTWFLEE 189 Query: 184 CN 185 Sbjct: 190 ME 191 >gi|167035116|ref|YP_001670347.1| ribonuclease D [Pseudomonas putida GB-1] gi|166861604|gb|ABZ00012.1| ribonuclease D [Pseudomonas putida GB-1] Length = 377 Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +AVDTE + + + ++Q+ G I + G + L +L D K+ Sbjct: 23 QLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--DWQPLADLLEDSGVVKV 80 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ VL G +P+F T++A+ G ++++LGI + K + S Sbjct: 81 LHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQDVLGIELPKGETRS 139 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 DW LS+ Q+ YAA D VHL L + +L + Sbjct: 140 DWLQRPLSETQVSYAAEDAVHLAELFTELRPRLSD-DKYTWVLED 183 >gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1] gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1] Length = 374 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R +A+DTE + + +VQ+ G I + ++ +L DE+ K Sbjct: 23 RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 80 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V G P+F T++A+ + G +KE+L I++ K + Sbjct: 81 VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 139 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 SDW L++ Q++YAA DV HL + L +L R+ L Sbjct: 140 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDTRLSEEKRAWLLED 184 >gi|325924432|ref|ZP_08185961.1| ribonuclease D [Xanthomonas gardneri ATCC 19865] gi|325545080|gb|EGD16405.1| ribonuclease D [Xanthomonas gardneri ATCC 19865] Length = 364 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 3/194 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H ++ A I +DTE + +L +VQ++ G+ + I + G Sbjct: 1 MPHWITHPSELTQRLHAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L K+ H D+ GV RP+F T+IA+ L + Sbjct: 61 NAA--LGEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 117 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ + + +L R Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELSRRLTEQDRLGWL 177 Query: 181 TSCCNFLMDRAELD 194 L+ E D Sbjct: 178 AEDAERLLATVEHD 191 >gi|188991267|ref|YP_001903277.1| hypothetical protein xccb100_1872 [Xanthomonas campestris pv. campestris str. B100] gi|167733027|emb|CAP51225.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 362 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 4/194 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H ++ R I +DTE + +L +VQ++ G+ + I + G Sbjct: 1 MPHWITHPSELTERLQLRP-SRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +A L LV K+ H D+ GV RP+F T+IA+ L + Sbjct: 60 TDA--LKDWLVAPDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 116 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ T KL R Sbjct: 117 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTAKLTAQDRLGWL 176 Query: 181 TSCCNFLMDRAELD 194 L+ E D Sbjct: 177 AEDGERLLGTVEHD 190 >gi|21231744|ref|NP_637661.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768130|ref|YP_242892.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004] gi|21113449|gb|AAM41585.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573462|gb|AAY48872.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004] Length = 362 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 4/194 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H ++ R I +DTE + +L +VQ++ G+ + I + G Sbjct: 1 MPHWITHPSELTERLQLRP-SRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 +A L L+ K+ H D+ GV RP+F T+IA+ L + Sbjct: 60 TDA--LKDWLIAPDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 116 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++E+ G ++K + SDW LS QL+YAA DV +L A+ T KL R Sbjct: 117 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTAKLTAQDRLGWL 176 Query: 181 TSCCNFLMDRAELD 194 L+ E D Sbjct: 177 AEDGERLLGTVEHD 190 >gi|71898238|ref|ZP_00680412.1| Ribonuclease D [Xylella fastidiosa Ann-1] gi|71731977|gb|EAO34034.1| Ribonuclease D [Xylella fastidiosa Ann-1] Length = 339 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 4/181 (2%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 DTE + L +VQ++ D + + + G +A L L KI H D Sbjct: 2 DTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALGLW--LAAPNVIKIMHSASED 59 Query: 86 IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDL 145 + Y GV RP+F T+I G + + ++ + + K + SDW L Sbjct: 60 LIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAKVTNVELGKGETRSDWMHRPL 118 Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE-LDLLGWENVDIF 204 + QL YAA+DV +L L TE+L + RS C L D E + W ++ I Sbjct: 119 TPAQLDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCTRLTDNIEQNENERWPHLAIR 178 Query: 205 S 205 S Sbjct: 179 S 179 >gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp. holarctica FSC022] gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp. holarctica FSC022] Length = 364 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 3/167 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVDTE + LC+VQL+ + I + L + D+ Sbjct: 16 LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI ++ F V +F T++A+ + Q LK LKE+L I I K Q Sbjct: 74 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW L+ QL Y+ DV +L L+ ++L + D Sbjct: 133 FSDWRNRPLTQNQLNYSIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179 >gi|89094008|ref|ZP_01166952.1| ribonuclease D [Oceanospirillum sp. MED92] gi|89081682|gb|EAR60910.1| ribonuclease D [Oceanospirillum sp. MED92] Length = 397 Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 10/207 (4%) Query: 2 TTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I + + +EC R + IA+DTE + ++Q++ I + Sbjct: 18 NPIWITSAEQLSECCEKWRNLPLIALDTEFQRVDTFYPLPGLIQVADDQACYLIDPLEIS 77 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + +L + DE K+ H D+ + G P+F T+IA+ L + GL Sbjct: 78 --DFSSLSTLFKDEGVVKVMHAATEDLELFHKEIGALPVPLFDTQIAAALIN-WGFSMGL 134 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + L+ L + + K + +S+W L+ Q +YAA DV +L A+ ++L G Sbjct: 135 QRMLESCLSVQLEKHETTSNWLQRPLTSSQEKYAALDVAYLPAIYEIQRQELLSRGHFHW 194 Query: 180 ATSCCNFLMDRAELDLLGWENVDIFSH 206 C+ ++ A +D +VD FS+ Sbjct: 195 VEQECSAMLADAAID-----DVDGFSY 216 >gi|56416471|ref|YP_153545.1| ribonuclease D [Anaplasma marginale str. St. Maries] gi|56387703|gb|AAV86290.1| ribonuclease D [Anaplasma marginale str. St. Maries] Length = 401 Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 6/182 (3%) Query: 9 GDIPAECAA---RYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 ++ CA +++A+DTE + RLC++Q++ G ++ + + + Sbjct: 11 NELAQFCAQILRDRPESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLS 69 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + DE K+FH R D+ L F RP+F T+ AS L + N G ++ Sbjct: 70 PLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVE 129 Query: 125 ELLGINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + LG+ ++K + DWS LS+ +++YA DV +LH L L R Sbjct: 130 QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKERLTWFLEE 189 Query: 184 CN 185 Sbjct: 190 ME 191 >gi|91792982|ref|YP_562633.1| ribonuclease D [Shewanella denitrificans OS217] gi|91714984|gb|ABE54910.1| ribonuclease D [Shewanella denitrificans OS217] Length = 371 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 3/166 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +DTE + RL ++Q G I +A ++ +L K Sbjct: 21 QSSPLLVLDTEFVRTRTYYARLGLIQAFDGKTLALIDPVA--IEDLSPFWQLLTAPHITK 78 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V + + P+F ++IA+ L + G ++E L + I K + Sbjct: 79 LVHSCSEDLEVFAHYGHCQPAPLFDSQIAASLA-GLGHGLGYAKLVQECLSVEIDKGESR 137 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +DW L+D QLQYAA+DV +L+ L EKL GR + Sbjct: 138 TDWMKRPLTDAQLQYAANDVFYLYKLYPLLLEKLNANGRVEWLLEE 183 >gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21] gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21] Length = 377 Score = 190 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A D E L +++C++Q+S I +A + L + + +KIFH Sbjct: 33 SVLAFDLEADSLHHYTEKVCLIQVSSASEDRLIDPLAPI--DVKVLAPIFANPAIKKIFH 90 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ L+ FG+ V +F T IAS+ ++ GL LK+ G+ + K Q +DW Sbjct: 91 GADYDMRSLYRDFGIEVVNLFDTMIASQFLGE--SEFGLAALLKKRFGVELDKRYQKADW 148 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S S E L YA D L L Q +L++ GR + Sbjct: 149 SKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGRLAWVEEESELV 195 >gi|57239422|ref|YP_180558.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|58579394|ref|YP_197606.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|57161501|emb|CAH58427.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden] gi|58418020|emb|CAI27224.1| Ribonuclease D [Ehrlichia ruminantium str. Welgevonden] Length = 389 Score = 190 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 3/177 (1%) Query: 10 DIPAECAARYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ + IAVDTE + RL ++Q++ +G +I + A + L Sbjct: 14 DVCNQLLMSCPKFIAVDTEFIRNCNEYYPRLSLIQIAWSEGKC-VIDVLADDIDLSVLES 72 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + +++ KIFH + DI L F P+F ++IA+ Y N G + + L Sbjct: 73 IFYNKEIVKIFHDCKQDIDALLTKFPRIPYPIFDSQIAAMFCAYYDNAVGYSKLVAQFLD 132 Query: 129 INISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 +++ K + S+W LSD+++QYA DVV+L+ L + L R Sbjct: 133 VSLDKLTLKRSNWLMRPLSDDKIQYALDDVVYLYELYQVLYDNLISSKRLLWFLEEM 189 >gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem] gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem] Length = 377 Score = 190 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 4/167 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A D E L +++C++Q+S I +A + L + + +KIFH Sbjct: 33 SVLAFDLEADSLHHYTEKVCLIQVSSTSEDRLIDPLAPI--DVKVLAPIFANPAIKKIFH 90 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ L+ FG+ V +F T IAS+ ++ GL LK+ G+ + K Q +DW Sbjct: 91 GADYDMRSLYRDFGIEVVNLFDTMIASQFLGE--SEFGLAALLKKRFGVELDKRYQKADW 148 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S S E L YA D L L Q +L++ GR + Sbjct: 149 SKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGRLAWVEEESELV 195 >gi|146281747|ref|YP_001171900.1| ribonuclease D [Pseudomonas stutzeri A1501] gi|145569952|gb|ABP79058.1| ribonuclease D [Pseudomonas stutzeri A1501] Length = 401 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 5/179 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V + + CA R + +AVDTE + + +VQ+ G I +A ++ Sbjct: 36 VDDAHLARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAV--RDWH 93 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L D K+ H D+ VL G +P+F T++A+ G ++ Sbjct: 94 PFATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIGF-SMGYSRLVQ 152 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +LGI + K + SDW LS+ Q++YAA D HL L KL R+ Sbjct: 153 AVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKLSDDKRA-WVLED 210 >gi|70728873|ref|YP_258622.1| ribonuclease D [Pseudomonas fluorescens Pf-5] gi|68343172|gb|AAY90778.1| ribonuclease D [Pseudomonas fluorescens Pf-5] Length = 377 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 8/188 (4%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 G + A+ + + +A+DTE + + ++Q+ G I + N L Sbjct: 15 GQLCAQW--QQLPFVALDTEFMRVDTFYPIAALLQIGDGQRAYLIDPLT--IDNWQPLAA 70 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L + K+ H D+ VL G P+F T++A+ G ++E+LG Sbjct: 71 LLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGF-SMGYSRLVQEVLG 129 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 I++ K + SDW LS+ Q+ YAA D VHL + + +L + L+ Sbjct: 130 IDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAQVFTELRPRLS-EDKYRWVLEDGAELV 188 Query: 189 D--RAELD 194 R E+D Sbjct: 189 ANLRREVD 196 >gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719] gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719] Length = 374 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R +A+DTE + + +VQ+ G I + ++ +L DE+ K Sbjct: 23 RTQPYLALDTEFMRVDTSYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 80 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ V G P+F T++A+ + G +KE+L I++ K + Sbjct: 81 VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 139 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 SDW L++ Q++YAA DV HL + L +L R+ L Sbjct: 140 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWLLED 184 >gi|330808098|ref|YP_004352560.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376206|gb|AEA67556.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 377 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 4/166 (2%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +A+DTE + + ++Q+ G I + N L +L + K Sbjct: 22 QQLPFVALDTEFMRVDTFYPIAGLLQIGDGKRAYLIDPLT--IDNWQPLAALLENPAVLK 79 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ VL G P+F T++A+ G ++E+LGI + K + Sbjct: 80 VLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLN-LGFSMGYSRLVQEVLGIELPKGETR 138 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW LS+ Q+ YAA D VHL + + KL + Sbjct: 139 SDWLQRPLSETQISYAAEDAVHLAEVFVLLRPKLSDE-KYRWVLED 183 >gi|117620631|ref|YP_856729.1| ribonuclease D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562038|gb|ABK38986.1| ribonuclease D [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 379 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 4/179 (2%) Query: 7 HEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + ++ A+ +A+DTE + +L + Q+ G+ + + + +L Sbjct: 17 QQAELDQYLASLADVPLAIDTEFVRTRTYYPQLGLFQIYDGEHLALLDPL---TLDLSSL 73 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 L + I H D+ ++ + G + T++A+ Y G + E Sbjct: 74 WQRLGRAGQIAILHASGEDLELIQHQAGHLPNQMHDTQLAAAFL-GYGVSVGFGALVNEF 132 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 L + + K Q +DW A L+ QL+YAA+DV +L L + KL G+ C Sbjct: 133 LAVELEKDQARTDWLARPLTPRQLEYAAADVFYLLPLYEKVMAKLHESGKFAWFEQECQ 191 >gi|330829588|ref|YP_004392540.1| ribonuclease D [Aeromonas veronii B565] gi|328804724|gb|AEB49923.1| Ribonuclease D [Aeromonas veronii B565] Length = 370 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 4/182 (2%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + + ++ A+ +A+DTE + +L + Q+ G+ + + + Sbjct: 5 LITQQDELEQYLASLADVPLAIDTEFVRTRTYYPQLGLFQIYDGEHLALLDPL---TLDL 61 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L L + I H D+ ++ + G + T++A+ Y G + Sbjct: 62 SALWQRLGRAGQIAILHASGEDLELIQHQAGHLPNQMHDTQLATAFL-GYGVSVGFGALV 120 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 E LG+ + K Q +DW A L+ QL+YAA+DV +L L + KL+ G+ Sbjct: 121 NEFLGVELEKDQARTDWLARPLTPRQLEYAAADVFYLMPLYEKVMAKLRESGKFAWFEQE 180 Query: 184 CN 185 C Sbjct: 181 CQ 182 >gi|58617449|ref|YP_196648.1| ribonuclease D [Ehrlichia ruminantium str. Gardel] gi|58417061|emb|CAI28174.1| Ribonuclease D [Ehrlichia ruminantium str. Gardel] Length = 389 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 3/177 (1%) Query: 10 DIPAECAARYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ ++ IAVDTE + RL ++Q++ G +I + A + L Sbjct: 14 DVCSQLLMSCPKFIAVDTEFIRNCNEYYPRLSLIQIAWSKGKC-VIDVLADDIDLSVLES 72 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + +++ KIFH + DI L F P+F ++IA+ Y N G + + L Sbjct: 73 IFYNKEIVKIFHDCKQDIDALLTKFPRIPYPIFDSQIAAMFCAYYDNAVGYSKLVAQFLD 132 Query: 129 INISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 +++ K + S+W LSD+++QYA DVV+L+ L + L R Sbjct: 133 VSLDKLTLKRSNWLMRPLSDDKIQYALDDVVYLYELYQVLYDNLISSKRLLWFLEEM 189 >gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea sp. MED297] gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297] Length = 380 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 5/179 (2%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 + E AA IA+DTE + L ++Q+ D I + + LV Sbjct: 15 AQVADEWAA--ASVIALDTEFVRTDSFYAHLGLIQVGIEDQVWLIDPLQIN--DWAPLVR 70 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L D K+ H D VL + GV ++ VF T+IA+ + Q ++ + Sbjct: 71 VLSDPAIVKVLHALSEDAEVLAHHLGVELQNVFDTQIAAGFL-GHPVQMSYARLVEAICD 129 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + + K SDW L+DEQ YAA+DV+ L+ + +L+ R + Sbjct: 130 VELPKEATRSDWLQRPLADEQCFYAAADVLWLYRVYQHCAAQLKEQNRYAWVAEDSQRM 188 >gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B] gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B] Length = 372 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 3/163 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D +A+DTE + +VQ++ D I + L +L K+ H Sbjct: 23 DFVAIDTEFRRRDTFWPEVALVQIATADQVWLIDPLPLTDTG--PLAELLQKSTLTKVLH 80 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ V GV P+F T+ A+ L Y ++ + +++ K + +SDW Sbjct: 81 SAGEDLEVFQAWLGVLPSPLFDTQKAAALL-GYGFGLSYAKLVEAVCQVSLDKDETNSDW 139 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 L+ Q +YAA DV +L + + GR + Sbjct: 140 LVRPLTSAQCRYAAQDVTYLVDVYSRLLGDAGTQGRLEWILEE 182 >gi|285018846|ref|YP_003376557.1| ribonuclease d protein [Xanthomonas albilineans GPE PC73] gi|283474064|emb|CBA16565.1| probable ribonuclease d protein [Xanthomonas albilineans] Length = 361 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 4/192 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H ++ A R I +DTE + +L +VQ++ + + I + G Sbjct: 1 MPYWIKHPNELAERLAQRPA-RIGLDTEFVRERTYWPQLALVQMAVAEEILLIDPLIPGM 59 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L L D KI H D+ G RP+F T+ + G + Sbjct: 60 PQA--LAPWLSDPGILKIMHSASEDLVTFKCACGTLPRPLFDTQ-IAAGLAGIGAGMGYQ 116 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++ GI+++K + SDW LS QL+YAA DV HL AL +LQ L RS Sbjct: 117 KLVLDITGIHLTKGETRSDWLRRPLSPAQLEYAADDVRHLFALHDTLHARLQALDRSTWL 176 Query: 181 TSCCNFLMDRAE 192 L+ E Sbjct: 177 QEDGERLLGTVE 188 >gi|104783019|ref|YP_609517.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48] gi|95112006|emb|CAK16733.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48] Length = 377 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 4/166 (2%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R + +A+DTE + + + +VQ+ G+ I + + L +L D K Sbjct: 22 RKLPFVALDTEFMRVDTFYPKAGLVQIGDGNQAFLIDPLLIS--DWQPLADLLDDSGVVK 79 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ VL G +P+F T++A+ G ++E+LG+ + K + Sbjct: 80 VLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNIGF-SMGYSRLVQEVLGLELPKGETR 138 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW LS+ Q+ YAA D VHL L +L + Sbjct: 139 SDWLQRPLSETQVSYAAEDAVHLAELFSALRPRLSD-DKFAWVLDD 183 >gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18] gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18] Length = 377 Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 4/167 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A D E L +++C++Q+S I +A + L + + +KIFH Sbjct: 33 SVLAFDLEADSLHHYTEKVCLIQVSSESENRLIDPLAPI--DVRVLAPIFANPAIKKIFH 90 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ L+ FG+ V +F T IAS+ ++ GL LK+ G+ + K Q +DW Sbjct: 91 GADYDMRSLYRDFGIEVVNLFDTMIASQFLGE--SEFGLAALLKKRFGVELDKRYQKADW 148 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S S E L+YA D L L Q +L GR + Sbjct: 149 SKRPFSQEMLEYAMKDTSLLIELYRQLEAELLAKGRLAWVEEESELV 195 >gi|225629620|ref|ZP_03787627.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591525|gb|EEH12558.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 135 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 67/133 (50%), Positives = 90/133 (67%) Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 KIFH+ RFD++++ Y P +CTKIASRL RTYT+ H LK+ ELL ++K Sbjct: 1 NITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLELLDTKLNK 60 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 QQSSDW ++L+D+Q YAASDV++LH ++ + L+R R +LA C FL R EL Sbjct: 61 QQQSSDWGDENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKCFEFLPTRIEL 120 Query: 194 DLLGWENVDIFSH 206 DL+GWENVDIF+H Sbjct: 121 DLMGWENVDIFNH 133 >gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400] Length = 381 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 4/171 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 +A D E + ++++C++Q + + +AA + L + + Sbjct: 24 LGREPIVACDLEADSMHHYQEKVCLIQFAVPGYAAIVDPLAA--PDISPLAPLFANAAIR 81 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH +DI L FG+ V +F T IA +L + GL L++ G+ + K Q Sbjct: 82 KVFHGADYDIRSLHRDFGMEVNNLFDTMIACQLLGE--REFGLAAQLRKRFGVELDKQYQ 139 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +DWS L+ ++YA D L L Q L+ GR C L Sbjct: 140 RADWSRRPLTPGMIEYAVKDTTLLIELCWQLATDLEAKGRRGWVEEECELL 190 >gi|77457615|ref|YP_347120.1| ribonuclease D [Pseudomonas fluorescens Pf0-1] gi|77381618|gb|ABA73131.1| putative ribonuclease [Pseudomonas fluorescens Pf0-1] Length = 377 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 5/174 (2%) Query: 11 IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + CA + + +A+DTE + + ++Q+ G I + L + Sbjct: 14 LAQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQVGDGKRAYLIDPLTINA--WQPLAAL 71 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L + K+ H D+ VL G P+F T++A+ G ++E+LGI Sbjct: 72 LENPAVLKVLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGF-SMGYSRLVQEVLGI 130 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + K + SDW LSD Q+ YAA D VHL + +Q KL + Sbjct: 131 ELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVFVQLRPKLSD-DKFAWVLED 183 >gi|119470938|ref|ZP_01613522.1| putative RNase D, processing tRNA precursors [Alteromonadales bacterium TW-7] gi|119445960|gb|EAW27240.1| putative RNase D, processing tRNA precursors [Alteromonadales bacterium TW-7] Length = 376 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 3/173 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + +A+DTE + + ++Q+ G+ I +A + + + +L D K Sbjct: 20 QNKPILAIDTEFMRRRTLYPEVALIQVFDGEHLALIDPLA--ELSLFDFWQVLKDPAVLK 77 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H DI V G P+F T+ A +L N G +K LLGI I K++ Sbjct: 78 VLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLL-GEGNCMGFALMVKTLLGIEIDKSESR 136 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W L+ +QL YAA+D HL +++ ++ + ++ Sbjct: 137 TNWLQRPLTTKQLDYAAADTFHLLPCFELIIDRINNADLFEIVLDESELIANK 189 >gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1] gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1] Length = 380 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 4/166 (2%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + IAVDTE+ GL ++++C++Q S + +A+ N L + + EK+ Sbjct: 27 ACEQIAVDTESNGLHAYQEQICLIQFSVPGADYLVDPLASV--NLSGLNEIFSNPGIEKV 84 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH +DI L FG +F T IA+R+ ++ GL L+E G+ + K Q + Sbjct: 85 FHAAEYDILCLKRDFGFTFTHLFDTMIAARILG--RSEVGLAALLEEHFGVTLDKRYQRA 142 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 +W+ L L YA D +L LR ++L G + LA Sbjct: 143 NWARRPLPPAMLNYARLDTHYLIDLRNHLAKELAERGLTALAEEDF 188 >gi|327479994|gb|AEA83304.1| ribonuclease D [Pseudomonas stutzeri DSM 4166] Length = 374 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 5/179 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V + + CA R + +AVDTE + + +VQ+ G I +A ++ Sbjct: 9 VDDAHLARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAV--RDWH 66 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L D K+ H D+ VL G +P+F T++A+ G ++ Sbjct: 67 PFATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIGF-SMGYSRLVQ 125 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +LGI + K + SDW LS+ Q++YAA D HL L KL R+ Sbjct: 126 AVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKLSDDKRA-WVLED 183 >gi|189426679|ref|YP_001953856.1| 3'-5' exonuclease [Geobacter lovleyi SZ] gi|189422938|gb|ACD97336.1| 3'-5' exonuclease [Geobacter lovleyi SZ] Length = 381 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 5/186 (2%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ H + CA +A+D E + R+++C++QLS GT + + Sbjct: 7 TVIEHNHQLEQLCAELTDETELALDLEADSMHHYREKVCLLQLSNRAGTWLVDPLRLS-- 64 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + L +L + H G +DI L FG+ V+ +F T +A++ T + GL Sbjct: 65 DLSPLRVLLARPGLRTVLHGGDYDIRSLHRDFGIVVQQMFDTMVAAQF--TGATEFGLAA 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L+E GI + K Q +DWS L+ E YAA D HL L + +L++LGR + Sbjct: 123 LLREHFGIELDKRFQKADWSKRPLTTEMADYAAHDTAHLLELADRLHARLEQLGRREWVA 182 Query: 182 SCCNFL 187 C L Sbjct: 183 EECALL 188 >gi|145299067|ref|YP_001141908.1| ribonuclease D [Aeromonas salmonicida subsp. salmonicida A449] gi|142851839|gb|ABO90160.1| ribonuclease D [Aeromonas salmonicida subsp. salmonicida A449] Length = 379 Score = 188 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 4/182 (2%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + + ++ A+ +A+DTE + +L + Q+ G+ + + + Sbjct: 14 LITQQAELEQYLASLADVPLAIDTEFVRTRTYYPQLGLFQIYDGEHLALLDPL---TLDL 70 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L L + I H D+ ++ + G + T++A+ Y G Sbjct: 71 APLWQRLGRAGQIAILHASGEDLELIQHEAGHLPNQMHDTQLATAFL-GYGVSVGFGALA 129 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 KE LG+++ K Q +DW A L++ QL+YAA+DV++L L + KL G+ Sbjct: 130 KEFLGVDLVKDQARTDWLARPLTERQLEYAAADVLYLMPLYEKVMAKLHESGKFAWFEQE 189 Query: 184 CN 185 C Sbjct: 190 CQ 191 >gi|315123522|ref|YP_004065528.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp. SM9913] gi|315017282|gb|ADT70619.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp. SM9913] Length = 376 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 3/173 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + +A+DTE + + ++Q+ G+ I +A + + + +L D K K Sbjct: 20 KNKPILAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLA--ELSLFDFWQILKDPKVLK 77 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H DI V G P+F T+ A +L N G +K LL I I K++ Sbjct: 78 VLHSPSEDIEVFQKYAGFVPYPLFDTQFALQLL-GEGNCMGFALMVKTLLNIEIDKSESR 136 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++W L+ +QL+YAA+D HL + ++ D+ + + ++ Sbjct: 137 TNWLQRPLTQKQLEYAAADTYHLLPCFELIIDSIKAADLFDIVINESELVANK 189 >gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148] gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148] Length = 373 Score = 187 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 70/172 (40%), Gaps = 6/172 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLV 71 AA DA+ VDTE + ++ +VQL GT +I + AP L + Sbjct: 18 AAIGCDAVMVDTEFMRRNTFYPQVALVQLCFCGGGATGTAWMIDPLKIEDPAP-LANLFK 76 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D KI H D+ V GV P+F T+ A+ L G + + EL ++ Sbjct: 77 DAGVIKILHSASEDLEVFQRWLGVLPLPLFDTQKAAALV-GLDFGLGYRSMVLELCNEDL 135 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 K + SDW L++ Q YAA DV+ L E+ + R D Sbjct: 136 PKGETRSDWLQRPLTESQCHYAAQDVIWLLDAYQIIAERCHSMQRYDWVLED 187 >gi|213022814|ref|ZP_03337261.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 182 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 3/156 (1%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 +L ++QL G I + G + L +L D K H G D+ V FG Sbjct: 2 PQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGITKFLHAGSEDLEVFLNAFGEL 59 Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 P+ T+I + G ++E G+ + K++ +DW A LS+ Q +YAA+D Sbjct: 60 PEPLIDTQILAAFC-GRPLSWGFASMVEEYTGVALDKSESRTDWLARPLSERQCEYAAAD 118 Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 V +L + + + + G A C + R + Sbjct: 119 VWYLLPIAKKLMIETEAAGWLPAALDECRLMQQRRQ 154 >gi|302525782|ref|ZP_07278124.1| ribonuclease D [Streptomyces sp. AA4] gi|302434677|gb|EFL06493.1| ribonuclease D [Streptomyces sp. AA4] Length = 420 Score = 187 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 84/192 (43%), Gaps = 10/192 (5%) Query: 2 TTIRVHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIA 57 T V + D AE AR A+AVDTE + +VQL G GTV I IA Sbjct: 32 TPPVVADPDALAEACARLAAGTGAVAVDTERASGYRYWPKAYLVQLRREGSGTVLIDPIA 91 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 AP L +L D E + H D+ L +R R +F T++A RL + Sbjct: 92 LADDLAP-LRDVLNDT--EWVLHAASQDLPCL-AELNLRPRSLFDTELAGRLAGY--ERV 145 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L ++ LLG + K ++DWS L + L YAA DV L+ LR + +L G+ Sbjct: 146 ALGTLVELLLGYTLEKGHSAADWSKRPLPVDWLNYAALDVELLNELREKLEAELTAQGKL 205 Query: 178 DLATSCCNFLMD 189 + A + Sbjct: 206 EWARQEFEAVRT 217 >gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter sp. FRC-32] gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter sp. FRC-32] Length = 390 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 4/167 (2%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + +A D E L +++C++Q+S T I +A + L +L D K+FH Sbjct: 40 NILAFDLEADSLHHYTEKVCLIQVSNLSQTALIDPLAPV--DLSPLAPVLADRGIRKVFH 97 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 +D+ L+ FG+ V +F T IA + + GL LK+ G+ ++K Q +DW Sbjct: 98 GADYDMRSLYRDFGLEVCNMFDTMIACQFLGE--KEVGLAAALKKRFGVELNKKYQKADW 155 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S S E ++YA D L L LQ E+L+ GR + + Sbjct: 156 SKRPFSAEMIEYAKMDTALLIRLYLQLEEELRAKGRLEWVEEESELV 202 >gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01] gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01] Length = 388 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 4/173 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + IAVD E + +++ C++Q++ + + + L +L +++ Sbjct: 30 SLQSQKCIAVDLEADSMFHYQEKACLLQITSNGLNYIVDPL--CDCDVKALAPILENDEI 87 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 +KIFH +D+ LF FG+ + +F T++A+R Q GL L+ G+ + K Sbjct: 88 QKIFHGADYDVRCLFRDFGIELHNLFDTQVAARFLGE--PQTGLAPLLESRFGVQLEKKY 145 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 Q +WS L E + YAA+D VHL L ++L R C L Sbjct: 146 QKKNWSLRPLPPEMMAYAANDTVHLLELAEILKKELVEKDRLFWVEEECEILT 198 >gi|229589039|ref|YP_002871158.1| putative ribonuclease [Pseudomonas fluorescens SBW25] gi|229360905|emb|CAY47765.1| putative ribonuclease [Pseudomonas fluorescens SBW25] Length = 377 Score = 186 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 4/166 (2%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +A+DTE + + ++Q+ G I + N L +L + K Sbjct: 22 QQLPFVALDTEFMRVDTFYPIAGLIQIGDGVRAYLIDPLT--IDNWQPLAALLENPAVIK 79 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ VL G P+F T++A+ G ++ +L I + K + Sbjct: 80 VVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQAVLDIELPKGETR 138 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW LS+ Q+ YAA D VHL + + +L + Sbjct: 139 SDWLQRPLSETQISYAAEDAVHLAEVYTRLRPRLSDE-KYAWVLDD 183 >gi|77362412|ref|YP_341986.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas haloplanktis TAC125] gi|76877323|emb|CAI89540.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas haloplanktis TAC125] Length = 376 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 6/188 (3%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + +A+DTE + + ++Q+ G+ I +A + + + +L D K Sbjct: 20 KNKPVLAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLA--ELSLFDFWQILKDPAVLK 77 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FH DI V G P+F T+ A ++ N G +K LL I I K++ Sbjct: 78 VFHSPSEDIEVFQKYAGFVPTPLFDTQFALQIL-GEGNCMGFALMVKTLLDIEIDKSESR 136 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL---D 194 ++W L+++QL+YAA+D HL + ++ ++ S + ++ E D Sbjct: 137 TNWLQRPLTNKQLEYAAADAYHLLPCFNLIIDSVKAADLFNIVISESELVANKREFQTPD 196 Query: 195 LLGWENVD 202 L ++++ Sbjct: 197 ELLYKDIK 204 >gi|312959586|ref|ZP_07774103.1| ribonuclease D [Pseudomonas fluorescens WH6] gi|311286303|gb|EFQ64867.1| ribonuclease D [Pseudomonas fluorescens WH6] Length = 377 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 4/166 (2%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + +A+DTE + + ++Q+ G I + N L +L + K Sbjct: 22 QQLPFVALDTEFMRVDTFYPIAGLIQIGDGVRAYLIDPLT--IDNWQPLAALLENPSVIK 79 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ VL G P+F T++A+ G ++ +L I++ K + Sbjct: 80 VVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQAVLDIDLPKGETR 138 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SDW LS+ Q+ YAA D VHL + + KL + Sbjct: 139 SDWLQRPLSETQISYAAEDAVHLAEVYTRLRPKLSD-DKYAWVLED 183 >gi|254514489|ref|ZP_05126550.1| ribonuclease D [gamma proteobacterium NOR5-3] gi|219676732|gb|EED33097.1| ribonuclease D [gamma proteobacterium NOR5-3] Length = 372 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 3/171 (1%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A A IAVDTE + + ++QL D I + + L ++ D Sbjct: 15 ALDALSNASEIAVDTEFMRRNTYYPHIALLQLCSDDHAWLIDPLKV--TDLDGLRALMTD 72 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+ H D+ V + GV P+ T+ A+ L G + ++ LLG+ + Sbjct: 73 TGCWKVLHSCSEDLEVFRHWLGVVPSPLIDTQRATALLGKGF-GLGYRALIELLLGVELD 131 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 K + SDW LSD Q YAA DV+ L + GR + Sbjct: 132 KGETRSDWLKRPLSDSQCHYAALDVLKLVPAWKILKDLALSQGRMEWILDE 182 >gi|88857337|ref|ZP_01131980.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas tunicata D2] gi|88820534|gb|EAR30346.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas tunicata D2] Length = 375 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 73/187 (39%), Gaps = 5/187 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + A +A+DTE + + ++Q+ G I + Sbjct: 9 QSQLDEFLQAISTQSVLAIDTEFMRRRTLYPEIALIQVFDGQHLGLIDP--CCDLDLSRF 66 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 ++ D K+ H D+ V G P+F T+ A L N G ++ Sbjct: 67 WQIMSDAAILKVLHSPSEDVEVFLKH-GCIPSPIFDTQFALSLLGG-ANCLGFAIMVERF 124 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 LG+ I K++ ++W LS QL+YAA DV +L + +++ LG ++ + Sbjct: 125 LGLTIDKSESRTNWLQRPLSASQLEYAAGDVFYLLPCFEKIRAEIEALGFMNIVIGEGDL 184 Query: 187 LMDRAEL 193 L+ + Sbjct: 185 LVTKRAY 191 >gi|300784546|ref|YP_003764837.1| ribonuclease D [Amycolatopsis mediterranei U32] gi|299794060|gb|ADJ44435.1| ribonuclease D [Amycolatopsis mediterranei U32] Length = 407 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 9/189 (4%) Query: 2 TTIRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58 + ++ CA A A+AVDTE + +VQL G GTV I IA Sbjct: 20 PPVITDAAELAEACAKLAAGTGAVAVDTERASGYRYFPKAYLVQLRREGAGTVLIDPIAL 79 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + AP L +L E + H D+ L G+ +F T++A RL + Sbjct: 80 DGELAP-LREVL--NSLEWVLHAASQDLPCL-AELGLHPAALFDTELAGRLAGY--ERVA 133 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L ++ LLG + K ++DWS L + L YAA DV L LR + +L G+ + Sbjct: 134 LGTLVELLLGYTLEKGHSAADWSKRPLPVDWLNYAALDVELLIQLREKLEAELGAQGKLE 193 Query: 179 LATSCCNFL 187 A F+ Sbjct: 194 WARQEFEFV 202 >gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684] gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684] Length = 374 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 4/174 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AVD E + ++++C++Q + D TV + +AAG + L +L D Sbjct: 19 DLETCAVFAVDLEADSMHSYQEKVCLLQFTYHDTTVLLDPLAAG--DLAPLKPVLADSSI 76 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KIFH +DI L F + +R +F T IAS+ + GL D L + + + K Sbjct: 77 RKIFHAADYDIRCLARDFDIEIRGLFDTMIASQFLGE--EKVGLADVLGKYFDVTLDKRF 134 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 Q +DWS LS E YAA D HL L L+ R L Sbjct: 135 QRADWSKRPLSPEMCHYAAEDTRHLEKLVAILEPALKEKDRLWWVEEEFRLLEQ 188 >gi|256822615|ref|YP_003146578.1| ribonuclease D [Kangiella koreensis DSM 16069] gi|256796154|gb|ACV26810.1| ribonuclease D [Kangiella koreensis DSM 16069] Length = 384 Score = 184 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 3/165 (1%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +AVDTE RL ++Q+ G I +A + L + K Sbjct: 33 ALKELAVDTEFDRTNTYFHRLALIQIYDGKEIYLIDPLAF--DDLSALTELFASTSVVKA 90 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L++ +G VF T+IA+ L G + ++ L + + K + Sbjct: 91 LHSCSEDLEALYHQYGFEFNQVFDTQIAASL-DGIGLSVGYGNIVEHFLSVVLDKEHTKT 149 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 DW LS EQ YAA DV +L + + + L G + Sbjct: 150 DWLQRPLSQEQRVYAAQDVQYLMPVYYRLRDSLLEKGLFECVIED 194 >gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27] gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27] Length = 388 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 4/170 (2%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 V AIA+DTE DR+ ++QLS D I + G L +L D + Sbjct: 20 AGLNGVRAIALDTEGASFHRFVDRIYLLQLSTADHEAVIDPLPIGTP--TRLGVLLEDPQ 77 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 E + H +D+ +L +G RV +F T++A++L GL L++ GI + K Sbjct: 78 VEVVLHDADYDLRLLRQDYGWRVTHLFDTRVAAQLLG--IRAFGLAALLEQFFGIKLDKK 135 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 Q +DWS L+ + L YAA D HL LR + ++L + GR A Sbjct: 136 HQRADWSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKGRWSWAQEEF 185 >gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379] gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379] Length = 382 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 4/167 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVD E L R+++C++Q+S + I +A K+ L L + + H Sbjct: 33 VAVDLEMDSLHHYREKVCLIQISTRTESWLIDPLA--LKDLSPLAAPLGNRDILIVMHGA 90 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +DI L G+ V +F T IASRL + GL LK GI ++K Q +DWS Sbjct: 91 DYDIRSLHRDHGIEVTNLFDTMIASRLLG--ITEFGLAALLKARFGIELNKKYQKADWSK 148 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 LS E YA +D L L ++L GR C + Sbjct: 149 RPLSPEMRAYAVADTADLLRLYDMLRDELLEKGRLAWLEEECRLVCQ 195 >gi|330894750|gb|EGH27411.1| ribonuclease D [Pseudomonas syringae pv. mori str. 301020] Length = 377 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQNAWLIDPLLIN--DWQPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRL 172 >gi|330941897|gb|EGH44622.1| ribonuclease D [Pseudomonas syringae pv. pisi str. 1704B] Length = 377 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVLHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFTILRARL 172 >gi|257483935|ref|ZP_05637976.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320325216|gb|EFW81283.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. B076] gi|320327790|gb|EFW83798.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4] gi|330989388|gb|EGH87491.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013134|gb|EGH93190.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 377 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWQPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFSILRPRL 172 >gi|71735861|ref|YP_273799.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556414|gb|AAZ35625.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A] Length = 377 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWQPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFSILRPRL 172 >gi|289628944|ref|ZP_06461898.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651074|ref|ZP_06482417.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 2250] gi|298486131|ref|ZP_07004194.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159138|gb|EFI00196.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868058|gb|EGH02767.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 377 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRL 172 >gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2] gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2] Length = 381 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 4/170 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + AIAVD E + ++++C++Q S + + +A K+ L + Sbjct: 24 LQKETAIAVDLEADSMFHYQEKVCLLQFSTPSKNILVDPLAV--KDLSPLAPIFKSFGIC 81 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KIFH +DI L+ F + V +F T+IA+R GL L+ L I + K Q Sbjct: 82 KIFHGADYDIRSLYRDFKIEVNALFDTQIAARFLG--LTDIGLASLLQGKLNITLKKKYQ 139 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 DWS L LQYA D HL L E+L + GR C Sbjct: 140 KKDWSQRPLPAPMLQYAVHDTCHLIPLAQNLREELVKTGRLPFVEEECQL 189 >gi|330959294|gb|EGH59554.1| ribonuclease D [Pseudomonas syringae pv. maculicola str. ES4326] Length = 377 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLALHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGKSAWLIDPLLIN--DWRPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRL 172 >gi|261855126|ref|YP_003262409.1| ribonuclease D [Halothiobacillus neapolitanus c2] gi|261835595|gb|ACX95362.1| ribonuclease D [Halothiobacillus neapolitanus c2] Length = 374 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 4/169 (2%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + +LC+VQ++ D I +A L L +FH Sbjct: 36 TIDTEFMRESTYFPQLCLVQIATPDAIWLIDPLAVP---LAPLWHELNRTSSPLVFHAAE 92 Query: 84 FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 D+ +++ G + + ++IA+ Q G + + LL + + K+Q ++W+ Sbjct: 93 QDLELIYLDSGALPQTLRDSQIAAAFL-GLGEQIGYANLVNRLLHVELDKSQSRTNWAQR 151 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 L+ EQ YAA DV L ++ E+L R C L D Sbjct: 152 PLTAEQQHYAADDVRFLRSMYPLLREQLATKNRLAWFDEECAALSDPQR 200 >gi|330877463|gb|EGH11612.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4] Length = 307 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWQPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFSILRPRL 172 >gi|257056403|ref|YP_003134235.1| ribonuclease D [Saccharomonospora viridis DSM 43017] gi|256586275|gb|ACU97408.1| ribonuclease D [Saccharomonospora viridis DSM 43017] Length = 413 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 7/177 (3%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A A+AVDTE + ++Q+ G GT I I P L ++ Sbjct: 41 ERLAEGSGALAVDTERASGYRYWPKAYLIQIRREGAGTFLIDPIPLRDHFTP-LAEVM-- 97 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + E + H D+ L G+ +F T++A RL + L ++ LLG + Sbjct: 98 NQVEWVLHAASQDLPCL-AELGLHPPSLFDTELAGRLAGYQ--RVALGTLVESLLGYQLE 154 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 K ++DWS L + L YAA DV L LR + E+L G+ + A + Sbjct: 155 KGHSAADWSRRPLPLDWLNYAALDVELLLPLREKLEEELAASGKLEWARQEFEAVRT 211 >gi|237800267|ref|ZP_04588728.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023124|gb|EGI03181.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6] Length = 377 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 5/166 (3%) Query: 8 EGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + D A A++ + +A+DTE + + ++Q+ G I + + Sbjct: 10 DDDSLALYCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGKSAWLIDPLLIN--DWRP 67 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L + K+ H D+ VL G P+F T++A+ G ++E Sbjct: 68 LSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQE 126 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 127 VLDIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRL 172 >gi|331019018|gb|EGH99074.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 377 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWAPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LSD Q+ YAA D VHL L +L Sbjct: 128 LNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRL 172 >gi|330964859|gb|EGH65119.1| ribonuclease D [Pseudomonas syringae pv. actinidiae str. M302091] Length = 377 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + N L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--NWAPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LSD Q+ YAA D VHL L +L Sbjct: 128 LNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRL 172 >gi|213969693|ref|ZP_03397828.1| ribonuclease D [Pseudomonas syringae pv. tomato T1] gi|301383544|ref|ZP_07231962.1| ribonuclease D [Pseudomonas syringae pv. tomato Max13] gi|302062110|ref|ZP_07253651.1| ribonuclease D [Pseudomonas syringae pv. tomato K40] gi|302130100|ref|ZP_07256090.1| ribonuclease D [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925501|gb|EEB59061.1| ribonuclease D [Pseudomonas syringae pv. tomato T1] Length = 377 Score = 182 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWAPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LSD Q+ YAA D VHL L +L Sbjct: 128 LNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRL 172 >gi|28871074|ref|NP_793693.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000] gi|28854324|gb|AAO57388.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000] Length = 377 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWAPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LSD Q+ YAA D VHL L +L Sbjct: 128 LNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRL 172 >gi|330975291|gb|EGH75357.1| ribonuclease D [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 377 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFTILRPRL 172 >gi|284046840|ref|YP_003397180.1| ribonuclease D [Conexibacter woesei DSM 14684] gi|283951061|gb|ADB53805.1| Ribonuclease D [Conexibacter woesei DSM 14684] Length = 396 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 8/178 (4%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT------VDIIRIAAGQKNAPNLVGM 69 AR + +DTE + R LC+VQ++ D + + AP L + Sbjct: 21 LARAAGRLGIDTEFMSEGRYRALLCLVQVAVDDADAPNGVRIALFDPFDKLDFAP-LAAV 79 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D + E + H R D+A++ + VR VF T++A+ Y Q G + L LG Sbjct: 80 LADPEIEIVLHAARQDVAIMRRAWRTDVREVFDTQVAAGFA-GYGAQTGYGNLLGAALGQ 138 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + K + W A L++EQL YAA DV+HL L +KL GR A C + Sbjct: 139 RVGKTASYTRWDARPLTEEQLSYAAEDVLHLLQLSDALHDKLSAHGRLQWAQEECRRM 196 >gi|302187116|ref|ZP_07263789.1| ribonuclease D [Pseudomonas syringae pv. syringae 642] Length = 377 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFTILRPRL 172 >gi|330900086|gb|EGH31505.1| ribonuclease D [Pseudomonas syringae pv. japonica str. M301072PT] Length = 377 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQITYAAEDAVHLAELFTILRPRL 172 >gi|239946745|ref|ZP_04698498.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] gi|239921021|gb|EER21045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] Length = 281 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ + I ++ + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F + VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 81 REDLEIFYNLFKILPSNVFDIQIAANIC-GFGKQLSYNDLCYKLIGITIDKTHQKSNWLK 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199 ++ + L YA DV +L+ + + + R ++ + + L+D + W+ Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLDVRNYKVEPKDAWK 199 Query: 200 NVDIFS 205 + S Sbjct: 200 KIKYRS 205 >gi|67459201|ref|YP_246825.1| ribonuclease D [Rickettsia felis URRWXCal2] gi|67004734|gb|AAY61660.1| Ribonuclease D [Rickettsia felis URRWXCal2] Length = 281 Score = 181 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ + I ++ + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 81 REDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199 ++ + L YA DV +L+ + + + R ++ + + L+D + W+ Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLDVRNYKVEPKNAWK 199 Query: 200 NVDIFS 205 + S Sbjct: 200 KIKYRS 205 >gi|294055851|ref|YP_003549509.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221] gi|293615184|gb|ADE55339.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221] Length = 386 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 2/191 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I E A A+ A+ VDTE + L +VQL DG ++I A ++ Sbjct: 2 ITTTEALREAVRRAQDAGAVGVDTEFVWDRTYYPTLGVVQLGYPDGHCELID-APEIEDW 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L ++ D KI H + D+ +L G + +F T++ + ++ L+D L Sbjct: 61 SPLAELMSDPNVVKILHDAQQDLTILRRVCGSDPKTIFDTQLTAGFI-GLSSTISLRDIL 119 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 K LL + ++K + SDW A L++ Q++YA DV L Q ++ LGR + + Sbjct: 120 KTLLKVRLAKTETQSDWVARPLTEAQIKYAEDDVRDSVRLMEQILKRADALGRREWIENE 179 Query: 184 CNFLMDRAELD 194 + D A + Sbjct: 180 MTYYEDAAIYE 190 >gi|254428623|ref|ZP_05042330.1| ribonuclease D [Alcanivorax sp. DG881] gi|196194792|gb|EDX89751.1| ribonuclease D [Alcanivorax sp. DG881] Length = 375 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 6/171 (3%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 + +DTE + +L +VQ+ G+ I + P L + ++ + H Sbjct: 42 PLYLDTEFMRERTFWPQLALVQVHDGEQIRLIDTTRV---DGPTLSPVF--QQHTLVMHA 96 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ + G + T+IA+ L+ Q G + ++ LLG+++ K ++W Sbjct: 97 CSEDLEAIATFTGQYPAAIEDTQIAAALS-GEDMQWGYQKVVQMLLGVDLPKGATRTNWL 155 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 LSDEQL YA DV +L + E+L +LGR C L+++A Sbjct: 156 KRPLSDEQLHYAEDDVKYLPEVAAILAERLDKLGRRAWWQEECERLLNQAR 206 >gi|330974089|gb|EGH74155.1| ribonuclease D [Pseudomonas syringae pv. aceris str. M302273PT] Length = 377 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTILRPRL 172 >gi|66044808|ref|YP_234649.1| ribonuclease D [Pseudomonas syringae pv. syringae B728a] gi|63255515|gb|AAY36611.1| Ribonuclease D [Pseudomonas syringae pv. syringae B728a] Length = 377 Score = 180 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTILRPRL 172 >gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.] Length = 382 Score = 180 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 4/188 (2%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T I G A + I D E + +++C++Q++ + I I K Sbjct: 10 TIIETLSGLKDALVNIKEEKKIGFDLEADSMHHFPEKVCLLQVATKNCIFVIDTIK--LK 67 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + D + KIFH +D+ LF F + + +F +++ASR + GL+ Sbjct: 68 ELSLLKPIFADNEITKIFHGADYDVRSLFRDFNIEINNLFDSELASRFLG--VKETGLEA 125 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ + + K DWS L D+ L YAA DV +L L ++L +GR Sbjct: 126 VIRHRFNVYLEKKFTKRDWSKRPLIDDMLHYAADDVRYLVPLYEILEKELNDIGRLFWVK 185 Query: 182 SCCNFLMD 189 C+ L Sbjct: 186 EECDILCS 193 >gi|317508452|ref|ZP_07966122.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974] gi|316253299|gb|EFV12699.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974] Length = 470 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 7/180 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70 A A +AVD E + +VQL G GTV + I + P + Sbjct: 64 AARRLAGGRGPLAVDAERASGFRYWPKAYLVQLRRQGSGTVLLDPIDHPEALEPLAEAI- 122 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 E + H D+ L G+R +F T++ R+ + GL ++ LLG+ Sbjct: 123 --NGLEWVLHAADQDLPCL-AELGLRPAKLFDTELGGRIAG--FERVGLAALVETLLGVG 177 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++K ++DWS L E L YAA DV L +R E L G+++ A ++ R Sbjct: 178 LAKGHGAADWSQRPLPPEWLNYAALDVELLLPMREALLEALAEQGKTEWALEEFEYVRMR 237 >gi|85712692|ref|ZP_01043738.1| Ribonuclease D [Idiomarina baltica OS145] gi|85693542|gb|EAQ31494.1| Ribonuclease D [Idiomarina baltica OS145] Length = 367 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR + A+DTE + L +VQL+ T I + + L ++ D Sbjct: 9 ARLAGSFAIDTEFVRRKTYFANLGLVQLNVDGETFIIDPL--IDIDLTALWQLIADPDVV 66 Query: 77 KIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL-GINISKA 134 + H G DI + ++ G + R VF T+IA+ + G +++L G+ + K+ Sbjct: 67 TVLHAGGEDIELFYHQSNGQKPRAVFDTQIAAGFI-GMGSSLGYASLVEQLFDGVTLDKS 125 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 Q +DW LS+EQL YAA+DV +L+++ E++ + +D+ Sbjct: 126 QSRTDWLKRPLSEEQLTYAAADVSYLNSMYPWLVEQVAQAHVADIVVEESQL 177 >gi|157964642|ref|YP_001499466.1| ribonuclease D [Rickettsia massiliae MTU5] gi|157844418|gb|ABV84919.1| Ribonuclease D [Rickettsia massiliae MTU5] Length = 284 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ + I ++ + +L D KIFH Sbjct: 26 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 83 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 84 REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 142 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199 ++ + L YA DV +L+ + + + R ++ + + L+D + W+ Sbjct: 143 RPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLDVRNYKVESKDAWK 202 Query: 200 NVDIFS 205 + S Sbjct: 203 KIKYRS 208 >gi|238650864|ref|YP_002916719.1| ribonuclease D [Rickettsia peacockii str. Rustic] gi|238624962|gb|ACR47668.1| ribonuclease D [Rickettsia peacockii str. Rustic] Length = 281 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 6/183 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ + I ++ + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYTQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 81 REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199 ++ + L YA DV +L+ + + + R ++ + + L+D + W+ Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIVRNNLTNKYQTTLSALLDVRNYKVEPKDAWK 199 Query: 200 NVD 202 + Sbjct: 200 KIK 202 >gi|330879592|gb|EGH13741.1| ribonuclease D [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 377 Score = 179 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 4/165 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + N L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIEPLLIN--NWAPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L I++ K + SDW LSD Q+ YAA D VHL L +L Sbjct: 128 LNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRL 172 >gi|157825886|ref|YP_001493606.1| ribonuclease D [Rickettsia akari str. Hartford] gi|157799844|gb|ABV75098.1| Ribonuclease D [Rickettsia akari str. Hartford] Length = 281 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ + I ++ + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNVFNKLLEDNNITKIFHAP 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 81 REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDICYKLIGITIDKTHQKSNWLK 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199 ++ + L YA DV +L+ + + + R ++ + + L+D + W+ Sbjct: 140 RPITSDMLNYAMLDVKYLYKIYQELNNIIIRNNLTNKYKTTLSSLLDVINYKVEPKDAWK 199 Query: 200 NVDIFS 205 + S Sbjct: 200 KIKYRS 205 >gi|319786955|ref|YP_004146430.1| ribonuclease D [Pseudoxanthomonas suwonensis 11-1] gi|317465467|gb|ADV27199.1| ribonuclease D [Pseudoxanthomonas suwonensis 11-1] Length = 364 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 6/188 (3%) Query: 10 DIPAECAARYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 D PAE R A I +DTE + RL +VQ++ G + + + G A + Sbjct: 8 DQPAELLRRLQSAPSRIGLDTEFIRERTFWPRLALVQMAVGGDVLLVDALVPGMPEA--I 65 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 L K+ H D+ G RP++ T++A+ L + + ++ Sbjct: 66 AAWLDAPHVLKVMHSASEDLVTFRCACGTVPRPMYDTQVAAALAGFGAGMG-YQRLVAQV 124 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 G ++K + SDW LS QL+YAA DV HL A+ +L+ LGR Sbjct: 125 TGTTLAKGETRSDWMRRPLSPAQLEYAADDVRHLDAVYQATLARLRELGREAWLDEDMAR 184 Query: 187 LMDRAELD 194 +++A D Sbjct: 185 TVEQASHD 192 >gi|229586838|ref|YP_002845339.1| Ribonuclease D [Rickettsia africae ESF-5] gi|228021888|gb|ACP53596.1| Ribonuclease D [Rickettsia africae ESF-5] Length = 281 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 6/183 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ + I ++ + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 81 REDLEIFYNLFNTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199 ++ + L YA DV +L+ + + + R ++ + + L+D + W+ Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKEINNIIVRNNLTNKYQTTLSALLDVRNYKVEPKDAWK 199 Query: 200 NVD 202 + Sbjct: 200 KIK 202 >gi|34581576|ref|ZP_00143056.1| ribonuclease D [Rickettsia sibirica 246] gi|28262961|gb|EAA26465.1| ribonuclease D [Rickettsia sibirica 246] Length = 281 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 6/183 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ + I ++ + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 81 REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199 ++ + L YA DV +L+ + + + R ++ + + L+D + W+ Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKEINNIIVRNNLTNKYQTTLSALLDVRNYKVEPKDAWK 199 Query: 200 NVD 202 + Sbjct: 200 KIK 202 >gi|92113585|ref|YP_573513.1| ribonuclease D [Chromohalobacter salexigens DSM 3043] gi|91796675|gb|ABE58814.1| ribonuclease D [Chromohalobacter salexigens DSM 3043] Length = 375 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 77/188 (40%), Gaps = 3/188 (1%) Query: 11 IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + C A + +AVDTE +VQL G V ++ A +P L + Sbjct: 16 LDDACDALAGAEWLAVDTEFHRESTFFPIAALVQLYAGGDAVYMVDPRA-VSASPALQAL 74 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L K+ H D+ VL V V P+ T++A L T G + ++ G Sbjct: 75 LSVSGPLKLLHASGEDLEVLESWAEVGVAPIADTQVAQSLLGTQA-SLGYQRLVEHWTGD 133 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K + SDW LSD QLQYAA DVV+L + + L R GR C L D Sbjct: 134 VLPKEETRSDWLQRPLSDAQLQYAALDVVYLPRIWEAQRDALMREGRLAWLEEECARLCD 193 Query: 190 RAELDLLG 197 D+ Sbjct: 194 ANRRDVNA 201 >gi|326384419|ref|ZP_08206099.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395] gi|326196764|gb|EGD53958.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395] Length = 407 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 7/180 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGML 70 AE R IAVDTE R +VQL G G+ I I+ +P + + Sbjct: 39 AAELIGRGTGPIAVDTERASGYRYSQRAYLVQLKRAGSGSFLIDPISHPDALSPLIDAL- 97 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + E I H D+ L G +F T++A RL + L + E L + Sbjct: 98 --DGPEWILHAADQDLPCL-RELGFTPTTLFDTELAGRLLN--IPKVNLAAMVAEFLHLG 152 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++K ++DWS L D+ L YAA DV L LR + L GR + A +++ R Sbjct: 153 LAKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAVADALSEAGRDEWAAQEFAYVLAR 212 >gi|269468831|gb|EEZ80435.1| ribonuclease D [uncultured SUP05 cluster bacterium] Length = 345 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + LC+VQ++ T D I + +P + D I H Sbjct: 21 LAIDTEFKRVNTYYPVLCLVQIATKKNT-DCIDVLTLDDLSPLFDKLYQD-DCLWIVHSA 78 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI L Y + +F T+IA+ L Y Q + + L +++ KA DW+ Sbjct: 79 RQDIEALHYLSKQLPKQLFDTQIAASLVN-YPAQISYQALTESLQNVHLEKAYTRLDWTI 137 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL--DLL-GWE 199 L DE ++YA DV +L Q +L+ +S L+D D+ W+ Sbjct: 138 RPLPDEAIEYALDDVRYLLKNYRQLKTQLEVEEKSTWIEEEGKSLLDINLYNPDIKDAWQ 197 Query: 200 NVDIFS 205 V FS Sbjct: 198 RVKGFS 203 >gi|15892619|ref|NP_360333.1| ribonuclease D [Rickettsia conorii str. Malish 7] gi|15619787|gb|AAL03234.1| ribonuclease D [Rickettsia conorii str. Malish 7] Length = 281 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 6/183 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ + I ++ + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S+W Sbjct: 81 REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199 ++ + L YA DV +L+ + + + R ++ + + L+D + W+ Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKEVNNIIVRNNLTNKYQTTLSALLDVRNYKVEPKDAWK 199 Query: 200 NVD 202 + Sbjct: 200 KIK 202 >gi|157803677|ref|YP_001492226.1| ribonuclease D [Rickettsia canadensis str. McKiel] gi|157784940|gb|ABV73441.1| Ribonuclease D [Rickettsia canadensis str. McKiel] Length = 284 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 6/186 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ + I ++ N +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAENYCGIIDALSNVDLN--IFNKLLADNNITKIFHAP 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F VF +IA+ + + Q D +L GI I K Q S+W Sbjct: 81 REDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLFGIAIDKTHQKSNWLK 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199 ++ + L YA DV +L+ + + + R + + L+D + W+ Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIIRSNLVNKYQTTLGSLLDVRNYKVEPKDAWK 199 Query: 200 NVDIFS 205 + S Sbjct: 200 KIKYRS 205 >gi|302554895|ref|ZP_07307237.1| ribonuclease D [Streptomyces viridochromogenes DSM 40736] gi|302472513|gb|EFL35606.1| ribonuclease D [Streptomyces viridochromogenes DSM 40736] Length = 474 Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 8/172 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G GT I +A + L L Sbjct: 60 AAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC--PDLSALGEALS--GV 115 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 116 EWVLHAATQDLPCL-REIGMVPTRLFDTELAGRLAG--FPRVGLGAMVEGVLGFVLEKGH 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + DWS L + L+YAA DV L LR ++L R G+ D A + + Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWARQEFDAI 224 >gi|51246649|ref|YP_066533.1| ribonuclease D [Desulfotalea psychrophila LSv54] gi|50877686|emb|CAG37526.1| related to ribonuclease D [Desulfotalea psychrophila LSv54] Length = 374 Score = 177 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 3/192 (1%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I D+ A +DA+ +DTE + +L ++Q++ D I + + Sbjct: 5 NIISTTEDLKKIVNKALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEECYAIDPLSIKD 64 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +P L +L D KI H D+ ++ G + +F T++A+ + + L Sbjct: 65 LSP-LGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFDTRLAAGFAGSIST-ISLLQ 122 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + E L + K++ ++W L+++QL Y+ +DV +L A R+ K+ Sbjct: 123 LVSEQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYLRATRVILLSKIIGPKIKSWLQ 182 Query: 182 SCCNFLMDRAEL 193 N L + A Sbjct: 183 EELNLLNNPANY 194 >gi|262166840|ref|ZP_06034571.1| ribonuclease D [Vibrio cholerae RC27] gi|262024728|gb|EEY43402.1| ribonuclease D [Vibrio cholerae RC27] Length = 284 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 6/186 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ + I ++ N +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAENYCGIIDALSNVDLN--IFNKLLADNNITKIFHAP 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F VF +IA+ + + Q D +L GI I K Q S+W Sbjct: 81 REDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLFGIAIDKTHQKSNWLK 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199 ++ + L YA DV +L+ + + + R + + L+D + W+ Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIIRSNLVNKYQTTLGSLLDVRNYKVEPKDAWK 199 Query: 200 NVDIFS 205 + S Sbjct: 200 KIKYRS 205 >gi|157828635|ref|YP_001494877.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933351|ref|YP_001650140.1| ribonuclease D [Rickettsia rickettsii str. Iowa] gi|157801116|gb|ABV76369.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908438|gb|ABY72734.1| ribonuclease D [Rickettsia rickettsii str. Iowa] Length = 281 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 6/183 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +++DTE +L I+Q+ + I ++ + +L D KIFH Sbjct: 23 LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R D+ + + F VF +IA+ + + Q D +L+GI I K Q S W Sbjct: 81 REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSHWLK 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199 ++ + L YA DV +L+ + + + R ++ + + L+D + W+ Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIVRNNLTNKYQTTLSALLDVRNYKVEPKDAWK 199 Query: 200 NVD 202 + Sbjct: 200 KIK 202 >gi|91205505|ref|YP_537860.1| ribonuclease D [Rickettsia bellii RML369-C] gi|157827220|ref|YP_001496284.1| ribonuclease D [Rickettsia bellii OSU 85-389] gi|91069049|gb|ABE04771.1| Ribonuclease D [Rickettsia bellii RML369-C] gi|157802524|gb|ABV79247.1| Ribonuclease D [Rickettsia bellii OSU 85-389] Length = 286 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 6/185 (3%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +++DTE +L I+Q+ ++ I I + +L+D KIFH Sbjct: 21 KWLSIDTEFERRYTYYAKLSIIQVKAEGCSIIIDAI--NNLDLNVFNKLLIDNNIIKIFH 78 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R D + + F +F ++A+ + +Q D +L INI K Q S+W Sbjct: 79 APREDFEIFYNLFKTLPSNIFDVQVAANVC-GLGSQLSYDDICYKLFKINIDKTHQKSNW 137 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---G 197 ++++ L YA DV +L + Q + + ++ S FL + ++ Sbjct: 138 LKRPITEDMLNYAFLDVEYLDKIYKQLNKIILDNNLTNQYQSMLQFLFNIKNYEVKPEDA 197 Query: 198 WENVD 202 W+ V Sbjct: 198 WKKVK 202 >gi|307544648|ref|YP_003897127.1| ribonuclease D [Halomonas elongata DSM 2581] gi|307216672|emb|CBV41942.1| ribonuclease D [Halomonas elongata DSM 2581] Length = 395 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 5/185 (2%) Query: 11 IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + CA D IA+DTE +VQ G + +A + Sbjct: 34 LDEACAEVAEADVIALDTEFFREKTFHPVPALVQFCVGGAAYLVDPTVVACTDA--FRRL 91 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L E K+ H D+ V + GV V P+ T+IA L G + ++ +G Sbjct: 92 LG-EGPVKLLHASSEDLEVFLHWAGVTVSPLVDTQIAQALL-GEVPAMGYQKLVEFWVGE 149 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K + S+W LS+ Q YAA DV++L + + L+R GR C L+D Sbjct: 150 TLPKDETRSNWLERPLSETQTTYAALDVIYLLEVWQVQRDALERYGRLGWLEEECRKLVD 209 Query: 190 RAELD 194 +A D Sbjct: 210 QAARD 214 >gi|296270237|ref|YP_003652869.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833] gi|296093024|gb|ADG88976.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833] Length = 403 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 8/177 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72 + AR +A+D E R +VQL G GT I +A + L +L D Sbjct: 31 DAFARGTGPVAMDAERASGYRYSGRAYLVQLRREGAGTALIDPVAC--PDLGELDRVLAD 88 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + + H D+ L G R R +F T++A+RL + GL ++ +LG+ + Sbjct: 89 AEI--VLHAATQDLPCL-AELGFRPRRLFDTELAARLLGY--ERVGLATMVEVVLGLRLE 143 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 K ++DWS L ++ L+YAA DV L LR E+L G+ + A ++ Sbjct: 144 KGHSAADWSRRPLPEDWLRYAALDVEVLVELRDALYEQLVESGKLEWALEEFAAILS 200 >gi|330466515|ref|YP_004404258.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032] gi|328809486|gb|AEB43658.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032] Length = 438 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 11/181 (6%) Query: 13 AECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 AE AR+ +A+D E R +VQL G GT I + + L Sbjct: 63 AEVVARFAAGSGPVALDAERASGYRYSQRAYLVQLRRSGAGTALIDPLP--LPDLSALDA 120 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++ D E + H D+ L G+R R +F T++A+RL + GL ++LLG Sbjct: 121 VIADT--EWVLHAANQDLPCL-AELGLRPRRLFDTELAARLAG--FERVGLAALTEQLLG 175 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++ K ++DWS+ L + L YAA DV L LR +L R G+S A L+ Sbjct: 176 YSLEKHHSAADWSSRPLPESWLTYAALDVELLTDLRDALDAELTRQGKSQWAEEEFAALV 235 Query: 189 D 189 Sbjct: 236 Q 236 >gi|254821715|ref|ZP_05226716.1| ribonuclease D [Mycobacterium intracellulare ATCC 13950] Length = 430 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 85/194 (43%), Gaps = 5/194 (2%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61 ++ V+E + AE R AVD E +R ++Q+ G GTV I ++ G+ Sbjct: 35 SVSVYEIEAAAERLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGSGTVLIDPVSHGRD 94 Query: 62 NAPNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L + E I H D+ L G+R ++ T++A RL + L Sbjct: 95 PLEALRPVAEVLGTDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FERVNLA 151 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ LLG ++K ++DWS L E L YAA DV L LR E L G++D A Sbjct: 152 TMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIAEVLAGQGKTDWA 211 Query: 181 TSCCNFLMDRAELD 194 ++L D D Sbjct: 212 AQEFDYLRDTGSKD 225 >gi|15604326|ref|NP_220842.1| ribonuclease D (RND) [Rickettsia prowazekii str. Madrid E] gi|3861018|emb|CAA14918.1| RIBONUCLEASE D (rnd) [Rickettsia prowazekii] gi|292572078|gb|ADE29993.1| Ribonuclease D [Rickettsia prowazekii Rp22] Length = 281 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 76/188 (40%), Gaps = 6/188 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 ++++DTE +L I+Q+ I ++ + +L+D Sbjct: 17 LANHTSLSIDTEFERRYTYYAQLSIIQVKAEGYCGIIDTLS--NLDLNIFNKLLIDNNIT 74 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KIFH R D+ + + F +F +IA+ + + Q + +L+GI I K Q Sbjct: 75 KIFHAPREDLEIFYNLFKTLPSNIFDIQIAASIC-GFGQQLSYDNLCYKLIGITIDKTHQ 133 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 S+W ++++ L YA DV +L+ + + + + + L+D + Sbjct: 134 KSNWLKRPITNDMLNYAILDVEYLYKIYKELNNIIISNNLTHKYQHTLSALLDVRNYKVE 193 Query: 197 ---GWENV 201 W+ + Sbjct: 194 LKDAWKKI 201 >gi|332533384|ref|ZP_08409249.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505] gi|332037093|gb|EGI73550.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505] Length = 304 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 3/158 (1%) Query: 30 LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL 89 + + ++Q+ G+ I +A + + + +L D K+ H DI V Sbjct: 1 MRRRTLYPEVALIQVFDGEHLALIDPLA--ELSLFDFWEILKDPSVLKVLHSPSEDIEVF 58 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 G P+F T+ A +L N G +KEL GI I K++ ++W L+ +Q Sbjct: 59 QKYAGFVPSPLFDTQFALQLL-GEGNCMGFALMVKELQGIEIDKSESRTNWLQRPLTKKQ 117 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 L YAA+D +L E++ G D+ + + Sbjct: 118 LDYAAADTFYLLPCFELIIERINAAGFFDIVINESELI 155 >gi|51473650|ref|YP_067407.1| ribonuclease D [Rickettsia typhi str. Wilmington] gi|51459962|gb|AAU03925.1| ribonuclease D [Rickettsia typhi str. Wilmington] Length = 281 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 4/172 (2%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + C + ++++DTE +L I+Q+ I ++ + + Sbjct: 10 LEEFCDRLAHHKSLSIDTEFERRYTYYAQLSIIQVKAEGYCGIIDTLS--NLDLNIFNKL 67 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L+D KIFH R D+ + + F +F +IA+ + + Q + +L+GI Sbjct: 68 LIDNNITKIFHAPREDLEIFYNLFKTLPSNIFDIQIAASIC-GFGQQLSYDNLCYKLIGI 126 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 I K Q S+W ++ + L YA DV +L+ + + + ++ Sbjct: 127 TIDKTHQKSNWLKRPITSDMLNYAILDVEYLYKIYKELNNIIISNNLTNKYQ 178 >gi|325107025|ref|YP_004268093.1| ribonuclease D [Planctomyces brasiliensis DSM 5305] gi|324967293|gb|ADY58071.1| Ribonuclease D [Planctomyces brasiliensis DSM 5305] Length = 401 Score = 175 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 11/198 (5%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A +A DTE + R RLC++Q + V + + Sbjct: 13 EDLCDRLHA--SGQVAFDTEFVSEFTFRPRLCLLQFGTSEEKVAVDPFQ--LTDLTPWWE 68 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELL 127 ++ DE+ E I H GR +I ++ G + + + +I L R + H +++++ Sbjct: 69 IMADEQTEVIIHGGREEILFCWHAIGKKPQNLIDVQIVQGLLSRGFPLSHS--ALVQKVV 126 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC--- 184 + + +DWS L+ +Q+ YA DVVHL + + +L++ R+ A C Sbjct: 127 RKKVHGKETRTDWSKRPLTTKQINYAIEDVVHLIDIAEKQKVRLKKTKRTTWADEECRQF 186 Query: 185 -NFLMDRAELDLLGWENV 201 + L++ +L W+ + Sbjct: 187 VDGLVETQKLRGEAWQRL 204 >gi|110834629|ref|YP_693488.1| ribonuclease D [Alcanivorax borkumensis SK2] gi|110647740|emb|CAL17216.1| ribonuclease D [Alcanivorax borkumensis SK2] Length = 357 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 9/191 (4%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 + + +DTE + +L +VQ+ G V I I + + P L+ + + Sbjct: 17 ASLAAGSRLYLDTEFMRERTFWPQLALVQVHDG---VRIRLIDTTEVDGPTLLPVFQNHT 73 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 + H D+ + G + T+IA+ L+ Q G + ++ LLG+++ K Sbjct: 74 L--VMHACSEDLEAIATFTGQYPAAIEDTQIAAALS-GEDMQWGYQKVVQMLLGVDLPKG 130 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 ++W LSDEQL YA DV +L + E+L LGR C L+ +A Sbjct: 131 ATRTNWLKRPLSDEQLHYAEDDVKYLPEVAGILAERLDGLGRRAWWEEECARLLKQARSQ 190 Query: 195 LL---GWENVD 202 +L W NV Sbjct: 191 VLPQDAWRNVK 201 >gi|149196457|ref|ZP_01873512.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155] gi|149140718|gb|EDM29116.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155] Length = 372 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 2/161 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IA+DTE + ++Q+ G + +I + L +L KI H Sbjct: 23 IALDTEFVWTKTFHPIPGLLQIKSA-GEIHLIDLLIENFPKEILKELLESRDVCKILHSP 81 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ + + +F T++A T Q L E++ I ISK QQ SDW+ Sbjct: 82 DQDLKLFKLFCDAEAKNIFDTQLAYAFTGA-PKQVSLAKLCLEMMDIEISKTQQVSDWTK 140 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 L D QL YAA DV +L + EKL+ GR D Sbjct: 141 RPLKDSQLNYAAEDVRYLIEITETLREKLKENGRYDWFLEE 181 >gi|29828773|ref|NP_823407.1| ribonuclease D [Streptomyces avermitilis MA-4680] gi|29605878|dbj|BAC69942.1| putative ribonuclease D [Streptomyces avermitilis MA-4680] Length = 426 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 10/189 (5%) Query: 2 TTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58 + + + AA +AVD E R +VQL G GT I +A Sbjct: 39 PPVIADDASLAEVIAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC 98 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + L + E + H D+ L G+ +F T++A RL + G Sbjct: 99 --PDLSGLGEAIS--GVEWVLHAATQDLPCL-REIGMVPTRLFDTELAGRLAG--FPRVG 151 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L ++ +LG + K + DWS L + L+YAA DV L LR ++L R G+ + Sbjct: 152 LGAMVESVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLE 211 Query: 179 LATSCCNFL 187 A + + Sbjct: 212 WAQQEFDAI 220 >gi|298526151|ref|ZP_07013560.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A] gi|298495945|gb|EFI31239.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A] Length = 375 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62 + V E AE R AVD E R ++Q+ GTV I ++ G Sbjct: 35 VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 94 Query: 63 APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + E I H D+ L G+R ++ T++A RL ++ L Sbjct: 95 LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 151 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ LLG+ ++K ++DWS L L YAA DV L LR + L G++D A Sbjct: 152 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 211 Query: 182 SCCNFL 187 L Sbjct: 212 QEFEHL 217 >gi|296171911|ref|ZP_06852975.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893910|gb|EFG73681.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 430 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 7/203 (3%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61 ++ V E + AE R AVD E +R ++Q+ G GTV I ++ G Sbjct: 35 SVTVGEIEAAAELLGRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGAD 94 Query: 62 NAPNLVGMLV--DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 L + DE E I H D+ L G++ ++ T++A RL + L Sbjct: 95 PLEALRPVAEVLDED-EWILHSADQDLPCL-AEVGLQPPALYDTELAGRLAG--FERVNL 150 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ LLG ++K ++DWS L +E L YAA DV L LR + L + G++ Sbjct: 151 ATMVERLLGSGLAKGHGAADWSKRPLPEEWLNYAALDVELLIELRGAIADVLAQQGKTGW 210 Query: 180 ATSCCNFLMDRAELDLLGWENVD 202 A ++L D D Sbjct: 211 AAEEFDYLRQVGSRDPSAAARPD 233 >gi|302557678|ref|ZP_07310020.1| ribonuclease D [Streptomyces griseoflavus Tu4000] gi|302475296|gb|EFL38389.1| ribonuclease D [Streptomyces griseoflavus Tu4000] Length = 430 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 8/170 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E R +VQL G GT I +A + +L L E Sbjct: 62 GSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC--PDLSSLGEALS--GVEW 117 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+ +F T++A RL + GL ++ +LG + K + Sbjct: 118 VLHAATQDLPCL-REIGMVPSRLFDTELAGRLAG--FPRVGLGAMVENVLGFVLEKGHSA 174 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 DWS L + L+YAA DV L LR ++L R G+ D A + + Sbjct: 175 VDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWARQEFDAI 224 >gi|118618645|ref|YP_906977.1| hypothetical protein MUL_3315 [Mycobacterium ulcerans Agy99] gi|183982048|ref|YP_001850339.1| hypothetical protein MMAR_2035 [Mycobacterium marinum M] gi|118570755|gb|ABL05506.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] gi|183175374|gb|ACC40484.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 435 Score = 174 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 9/191 (4%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61 ++ + + A R AVD E +R ++Q+ G GTV I ++ G Sbjct: 34 SVTAGQIEAAATLLDRGSGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGGD 93 Query: 62 NAP---NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L +L K E I H D+ L G+R ++ T++A RL ++ Sbjct: 94 PLTVLQPLAEVLA--KDEWILHSADQDLPCL-AEVGMRPSALYDTELAGRLAGY--DRVN 148 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L ++ LLG+ + K ++DWS L + L YAA DV L LR + L G+SD Sbjct: 149 LATMVERLLGMGLVKGHGAADWSKRPLPSDWLNYAALDVELLIELRSAISGVLAEQGKSD 208 Query: 179 LATSCCNFLMD 189 A +L Sbjct: 209 WAAQEFEYLRT 219 >gi|297191335|ref|ZP_06908733.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486] gi|197720654|gb|EDY64562.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486] Length = 428 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 79/186 (42%), Gaps = 11/186 (5%) Query: 6 VHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61 V + D AE A + +AVD E R +VQL G GT + + G Sbjct: 45 VADEDALAEVIAAFAAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGTALVDPV--GCP 102 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + L L D E I H D+ L G+ +F T++A RL + GL Sbjct: 103 DLSALGDALADT--EWILHAATQDLPCL-REIGMVPARIFDTELAGRL--GGFPRVGLGA 157 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ +LG + K + DWS L + L+YAA DV L LR ++L R G+ D A Sbjct: 158 MVESVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWAH 217 Query: 182 SCCNFL 187 + + Sbjct: 218 QEFDAI 223 >gi|320103484|ref|YP_004179075.1| ribonuclease D [Isosphaera pallida ATCC 43644] gi|319750766|gb|ADV62526.1| ribonuclease D [Isosphaera pallida ATCC 43644] Length = 396 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 10/185 (5%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 D+ R DTE + LC++Q++ V I +A + Sbjct: 18 DLADHL--RAEGRFGFDTEFVAEESYEPILCLIQVATASKLVVIDALAFS--DLSPFWDA 73 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 ++D K E + H G D+ + G VF ++A+ T + L + +E+LG+ Sbjct: 74 VLDPKLEVVVHAGGEDLRICKIKTGRLPERVFDVQLAAGFT-GLSYPLSLTNLAREVLGV 132 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + + +DW LS Q+ YA DV HL L KL+R+GR D Sbjct: 133 QLVGGESRTDWRKRPLSVAQMNYALEDVRHLLDLADALRSKLERMGRLDWVIEE-----T 187 Query: 190 RAELD 194 RA LD Sbjct: 188 RAFLD 192 >gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827] gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827] Length = 414 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 7/166 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +AVDTE R +VQL G GTV + IA G + P + + E E + Sbjct: 48 GPVAVDTERASGYRYSQRAYLVQLRREGAGTVLVDPIALGGRLDPLVEAL---EGTEWVL 104 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+ +F T++A RL + L ++ LLG + K ++D Sbjct: 105 HAASQDLPCL-AELGLTPSALFDTELAGRLAG--FERVALGTLVELLLGYRLEKGHGAAD 161 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 WS L + L YAA DV L LR E+L++ G+ + A + Sbjct: 162 WSRRPLPADWLNYAALDVELLVQLRDVLEEELRQQGKLEWALEEFD 207 >gi|89274974|gb|ABD65937.1| ribonuclease D [Streptomyces fungicidicus] Length = 430 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 8/170 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E R +VQL G GT I +A + L L E Sbjct: 62 GSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC--PDLSALGEALS--GVEW 117 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+ +F T++A RL + GL ++ +LG + K + Sbjct: 118 VLHAATQDLPCL-REIGMVPSRLFDTELAGRLAG--FPRVGLGAMVENVLGFVLEKGHSA 174 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 DWS L + L+YAA DV L LR ++L R G+ D A + + Sbjct: 175 VDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWARQEFDAI 224 >gi|238063529|ref|ZP_04608238.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149] gi|237885340|gb|EEP74168.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149] Length = 442 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 11/179 (6%) Query: 13 AECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 AE AR+ +A+D E R +VQL G GT I + + +L Sbjct: 63 AEVVARFAAGTGPVALDAERASGYRYSQRAYLVQLRRAGAGTALIDPLP--LPDLSSLDS 120 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D E + H D+ L G+R R +F T++A+RL + GL ++LLG Sbjct: 121 AIADA--EWVLHAASQDLPCL-AEVGLRPRRLFDTELAARLAG--FERVGLAALTEQLLG 175 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++ K ++DWS+ L + L YAA DV L LR +L R G+S A L Sbjct: 176 FSLEKHHSAADWSSRPLPESWLTYAALDVELLTDLRDALDAELARQGKSAWAAEEFAAL 234 >gi|261414901|ref|YP_003248584.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371357|gb|ACX74102.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327506|gb|ADL26707.1| putative ribonuclease D [Fibrobacter succinogenes subsp. succinogenes S85] Length = 386 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 6/178 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 D AVDTE + RLC++Q++ G+ I+ G AP Sbjct: 21 ADLELYDMAAVDTEADSMYHYTARLCLIQITIGEHH-YIVDPLCGLDLAPLFKA---RAM 76 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 + IFH +D+ +L+ T+G + +F T +A+++ GL D +KE G + K Sbjct: 77 QTLIFHGADYDLRLLWQTYGFSPKSIFDTMLAAKILGEQH--LGLADLVKEYFGDELKKE 134 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 Q +DW+ LS + +YA D +LH L EKLQ+ GR + T CN L++ A Sbjct: 135 NQRADWTIRPLSLDMCEYAIHDTFYLHELCAILAEKLQQAGRMNWLTEQCNTLIEHAR 192 >gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S] gi|311888800|emb|CBH48112.1| putative RNase D [Rhodococcus equi 103S] Length = 445 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 7/177 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 AE A +AVD E R +VQL G G+ + I + P + Sbjct: 65 AAERLAAGTGPLAVDAERASGFRYSSRAYLVQLRRAGAGSFLLDPIPTAEDLEPLRDAI- 123 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 E + H D+ L G+ +F T++A RL + GL ++ LG+ Sbjct: 124 --NGLEWVLHSADQDLPCL-AELGLEPAALFDTELAGRLAG--FERVGLAAIVERTLGLE 178 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + K ++DWS L D L YAA DV L LR +L G+++ A + Sbjct: 179 LRKGHGAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGKTEWAAQEFEHV 235 >gi|120403469|ref|YP_953298.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1] gi|119956287|gb|ABM13292.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1] Length = 426 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 9/182 (4%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLV--- 67 A+ A AVD E +R +VQ+ G G+V I ++ G L Sbjct: 46 AADLLASGHGPFAVDAERASGFRYSNRAYLVQIRRAGAGSVLIDPVSHGGDPLEVLAPVA 105 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D E + H D+ L G+R ++ T++A RL + L ++ LL Sbjct: 106 EVLSDA--EWVLHAADQDLPCL-AEIGMRPPSLYDTELAGRLANY--ERVNLAAMVQRLL 160 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 G+ ++K ++DWS L + L YAA DV L LR +E LQ G+ A +L Sbjct: 161 GLQLTKGHGAADWSKRPLPQDWLNYAALDVEVLVDLRHAISEVLQEQGKEGWAAEEFEYL 220 Query: 188 MD 189 Sbjct: 221 RT 222 >gi|315444833|ref|YP_004077712.1| ribonuclease D [Mycobacterium sp. Spyr1] gi|315263136|gb|ADT99877.1| ribonuclease D [Mycobacterium sp. Spyr1] Length = 424 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 5/180 (2%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 A+ A AVD E +R +VQ+ G GTV I ++ G L + Sbjct: 44 AADLLASGTGPFAVDAERASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVA 103 Query: 71 VDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 E + H D+ L G+R ++ T++A RL ++ L ++ LLG+ Sbjct: 104 AVLSTDEWVLHAADQDLPCL-AEIGMRPTALYDTELAGRLAN--FDRVNLAAMVQRLLGL 160 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++K ++DWS L DE L YAA DV L LR L G+++ A +L Sbjct: 161 QLTKGHGAADWSKRPLPDEWLNYAALDVEVLTDLREAIAAILDEQGKAEWARQEFEYLRT 220 >gi|329940178|ref|ZP_08289460.1| ribonuclease [Streptomyces griseoaurantiacus M045] gi|329301004|gb|EGG44900.1| ribonuclease [Streptomyces griseoaurantiacus M045] Length = 428 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 10/189 (5%) Query: 2 TTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58 + E + AA +AVD E R +VQL G G+ I +A Sbjct: 43 PPVISDEAGLAEVVAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPVAC 102 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + + D E + H D+ L G+R +F T++A RL + G Sbjct: 103 --PDLSAFGAAIADA--EWVLHAATQDLPCL-REIGMRPTRLFDTELAGRLAG--FPRVG 155 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L ++ +LG + K + DWS L + L+YAA DV L LR ++L R G+ + Sbjct: 156 LGAMVENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLE 215 Query: 179 LATSCCNFL 187 A + + Sbjct: 216 WALQEFDAI 224 >gi|289768333|ref|ZP_06527711.1| ribonuclease [Streptomyces lividans TK24] gi|289698532|gb|EFD65961.1| ribonuclease [Streptomyces lividans TK24] Length = 428 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 11/184 (5%) Query: 8 EGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63 + D AE A + +AVD E R +VQL G G+ I +A + Sbjct: 48 DADALAEVTAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC--PDL 105 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D E + H D+ L G+ +F T++A RL + GL + Sbjct: 106 SGLGAAIADA--EWVLHAATQDLPCL-REIGMVPTRIFDTELAGRLAG--FPRVGLGAMV 160 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + +LG + K + DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 161 ENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQE 220 Query: 184 CNFL 187 + + Sbjct: 221 FDAI 224 >gi|90416003|ref|ZP_01223936.1| ribonuclease D [marine gamma proteobacterium HTCC2207] gi|90332377|gb|EAS47574.1| ribonuclease D [marine gamma proteobacterium HTCC2207] Length = 374 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 7/195 (3%) Query: 1 MTTIR--VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 MTTI + AE + DA +A+DTE + +L ++QLS G+ I Sbjct: 1 MTTINHWIDNSQQLAELCEQLQDATELAIDTEFMRSDTFFAKLALIQLSDGEQCWLIDTP 60 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A Q L +L + +FH D+ VL VR + +F +++A+ + Sbjct: 61 AIEQ--LQPLTALLNGPQLTLVFHSCGEDLEVLDQVLSVRPKKLFDSQVAAGIVN-IGYS 117 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 G ++ +L I + K SDW A LSD Q +YAA DV++L + E L++ R Sbjct: 118 MGYARLVENMLQIELGKEDTRSDWLARPLSDRQKRYAADDVLYLFRIYKLLLELLEQQQR 177 Query: 177 SDLATSCCNFLMDRA 191 L A Sbjct: 178 QSWFAEEMLDLQRVA 192 >gi|302866117|ref|YP_003834754.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029] gi|315502675|ref|YP_004081562.1| 3'-5' exonuclease [Micromonospora sp. L5] gi|302568976|gb|ADL45178.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029] gi|315409294|gb|ADU07411.1| 3'-5' exonuclease [Micromonospora sp. L5] Length = 439 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 8/172 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +A+D E R +VQL G GT I + + L ++ + Sbjct: 70 AAGTGPVALDAERASGYRYSQRAYLVQLRRGGAGTALIDPLP--LPDLSALDAVIAET-- 125 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+A L G+R R +F T++A+RL + GL ++LLG ++ K Sbjct: 126 EWVLHAASQDLACL-AEVGLRPRRLFDTELAARLAG--FERVGLAALTEQLLGFSLEKHH 182 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++DWS+ L + L YAA DV L LR E+LQR G+S A + L Sbjct: 183 SAADWSSRPLPESWLTYAALDVELLVDLRDSLDEELQRQGKSGWAAEEFDAL 234 >gi|262166092|ref|ZP_06033829.1| ribonuclease D [Vibrio mimicus VM223] gi|262025808|gb|EEY44476.1| ribonuclease D [Vibrio mimicus VM223] Length = 328 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 13/166 (7%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 + G+ I V +L D K+ H D+ V FG P+ T Sbjct: 1 MFDGENLSLIDP--TVIDEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDT 58 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 +I + Y G +++ L + + K++ +DW A LSD+QL+YAA+DV +L + Sbjct: 59 QIMAAFL-GYGLSTGFAALVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPM 117 Query: 164 RLQFTEKLQRLGRSDLATSCCNFL---------MDRAELDLLG-WE 199 + E++ G + A + A LD+ G W+ Sbjct: 118 YEKLLERVTHAGWWEAALQESELQVAKRTKVSNPELAYLDIKGAWQ 163 >gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus equi ATCC 33707] gi|325556528|gb|EGD26194.1| ribonuclease III [Rhodococcus equi ATCC 33707] Length = 413 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 7/177 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 AE A +AVD E R +VQL G G+ + I + P + Sbjct: 33 AAERLAAGTGPLAVDAERASGFRYSSRAYLVQLRRAGAGSFLLDPIPTAEDLEPLRDAI- 91 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 E + H D+ L G+ +F T++A RL + GL ++ LG+ Sbjct: 92 --NGLEWVLHSADQDLPCL-AELGLEPAALFDTELAGRLAG--FERVGLAAIVERTLGLE 146 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + K ++DWS L D L YAA DV L LR +L G+++ A + Sbjct: 147 LRKGHGAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGKTEWAAQEFEHV 203 >gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB] gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB] Length = 295 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 9/189 (4%) Query: 1 MTTIRVHEGDIPAECAARYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 M + V E + R + +AVDTE+ DR+C++Q+S + I ++ Sbjct: 1 MNPVVVIEKPSELDALVRQLSTARHLAVDTESNSFYAYFDRVCLIQISSPERDYIIDPLS 60 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 K+ L + + + EK+ H D+ L F R +F T IA +L Q Sbjct: 61 --LKDLSVLGRLFENPRIEKVLHAASNDVLGLRRDFQFRFNGLFDTAIACKLLGY--KQL 116 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 GL L+ G++++K Q DW L +QL YA D +L ALR LQ R Sbjct: 117 GLSKILETHFGVSLNKRWQRYDWGKRPLVPDQLDYARLDTHYLIALRHMLAADLQS--RE 174 Query: 178 DLATSCCNF 186 A +C F Sbjct: 175 LWAEACEAF 183 >gi|240169721|ref|ZP_04748380.1| hypothetical protein MkanA1_10437 [Mycobacterium kansasii ATCC 12478] Length = 433 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 5/189 (2%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61 ++ V + + AE R AVD E +R ++Q+ G GTV I ++ G + Sbjct: 34 SVTVGQIEAAAELLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGGE 93 Query: 62 NAPNLVGMLV-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 A L + + E I H D+ L G+R ++ T++A RL ++ L Sbjct: 94 PATALQPVAEVLRQDEWILHSADQDLPCL-AEVGMRPSALYDTELAGRLAG--FDRVNLA 150 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ LLG+ ++K ++DWS L L YAA DV L LR ++ L G++ A Sbjct: 151 TMVERLLGLGLAKGHGAADWSKRPLPPAWLNYAALDVELLIELRAAISQVLTEQGKTGWA 210 Query: 181 TSCCNFLMD 189 L Sbjct: 211 AEEFEHLRT 219 >gi|296394326|ref|YP_003659210.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985] gi|296181473|gb|ADG98379.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985] Length = 470 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 7/171 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +AVD E + +VQ G GTV + I + P + E + Sbjct: 62 GPLAVDAERASGFRYWPKAYLVQFRRQGSGTVLLDPIGHPEALEPLAEAV---NGLEWVL 118 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+R +F T++ R+ + GL ++ LLG+ ++K ++D Sbjct: 119 HAADQDLPCL-AELGLRPAKLFDTELGGRIAG--FERVGLAALVEALLGVGLAKGHGAAD 175 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 WS L E L YAA DV L +R L G++ A + R Sbjct: 176 WSQRPLPPEWLNYAALDVELLIPMREALLAVLAEQGKTQWALEEFEHVRTR 226 >gi|21224360|ref|NP_630139.1| ribonuclease [Streptomyces coelicolor A3(2)] gi|3169042|emb|CAA19240.1| putative ribonuclease [Streptomyces coelicolor A3(2)] Length = 394 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 11/184 (5%) Query: 8 EGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63 + D AE A + +AVD E R +VQL G G+ I +A + Sbjct: 14 DADALAEVTAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC--PDL 71 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D E + H D+ L G+ +F T++A RL + GL + Sbjct: 72 SGLGAAIADA--EWVLHAATQDLPCL-REIGMVPTRIFDTELAGRLAG--FPRVGLGAMV 126 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + +LG + K + DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 127 ENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQE 186 Query: 184 CNFL 187 + + Sbjct: 187 FDAI 190 >gi|145224502|ref|YP_001135180.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK] gi|145216988|gb|ABP46392.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK] Length = 424 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 5/180 (2%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 A+ A AVD E +R +VQ+ G GTV I ++ G L + Sbjct: 44 AADLLASGTGPFAVDAERASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVA 103 Query: 71 VDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 E + H D+ L G+R ++ T++A RL ++ L ++ LLG+ Sbjct: 104 AVLSTDEWVLHAADQDLPCL-AEIGMRPTALYDTELAGRLAN--FDRVNLAAMVQRLLGL 160 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++K ++DWS L DE L YAA DV L LR L G+++ A +L Sbjct: 161 QLTKGHGAADWSKRPLPDEWLNYAALDVEVLTDLREAIAAVLDEQGKAEWARQEFEYLRT 220 >gi|239928248|ref|ZP_04685201.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672] Length = 398 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 8/172 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G GT I +A + L L Sbjct: 26 AAGTGPVAVDAERASGYRYGQRAYLVQLRRQGAGTALIDPVAC--PDLSALGEALS--GV 81 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 82 EWVLHAATQDLPCL-REIGMLPTRLFDTELAGRLAG--FPRVGLGAMVENVLGYVLEKGH 138 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + DWS L + L+YAA DV L LR ++L R G+ + A + + Sbjct: 139 SAVDWSTRPLPEPWLRYAALDVELLVDLRNALEKELDRQGKLEWARQEFDAI 190 >gi|256784454|ref|ZP_05522885.1| ribonuclease [Streptomyces lividans TK24] Length = 384 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 11/184 (5%) Query: 8 EGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63 + D AE A + +AVD E R +VQL G G+ I +A + Sbjct: 4 DADALAEVTAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC--PDL 61 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D E + H D+ L G+ +F T++A RL + GL + Sbjct: 62 SGLGAAIADA--EWVLHAATQDLPCL-REIGMVPTRIFDTELAGRLAG--FPRVGLGAMV 116 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + +LG + K + DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 117 ENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQE 176 Query: 184 CNFL 187 + + Sbjct: 177 FDAI 180 >gi|291436577|ref|ZP_06575967.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672] gi|291339472|gb|EFE66428.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672] Length = 432 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 8/172 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G GT I +A + L L Sbjct: 60 AAGTGPVAVDAERASGYRYGQRAYLVQLRRQGAGTALIDPVAC--PDLSALGEALS--GV 115 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 116 EWVLHAATQDLPCL-REIGMLPTRLFDTELAGRLAG--FPRVGLGAMVENVLGYVLEKGH 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + DWS L + L+YAA DV L LR ++L R G+ + A + + Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRNALEKELDRQGKLEWARQEFDAI 224 >gi|118467912|ref|YP_887109.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155] gi|118169199|gb|ABK70095.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155] Length = 415 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 9/182 (4%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG---QKNAPNLV 67 A A A+D E +R +VQ+ G GT I + G + Sbjct: 39 AARQLAGGSGPFAIDAERASGFRYSNRAYLVQIRRAGAGTALIDPVNHGGSPIDTLEPVA 98 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 L D+ E + H D+ L G+R ++ T++A RL + L ++ LL Sbjct: 99 QTLADD--EWVLHAADQDLPCL-AEIGLRPGKLYDTELAGRLAG--FERVNLAAMVQRLL 153 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 G+ + K ++DWS L DE L YAA DV L LR L+ G+++ A L Sbjct: 154 GLQLMKGHGAADWSKRPLPDEWLNYAALDVEVLLELRHAIAAVLEEQGKTEWAAQEFEHL 213 Query: 188 MD 189 Sbjct: 214 RT 215 >gi|119505873|ref|ZP_01627938.1| ribonuclease D [marine gamma proteobacterium HTCC2080] gi|119458301|gb|EAW39411.1| ribonuclease D [marine gamma proteobacterium HTCC2080] Length = 380 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 3/178 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +AVDTE + ++QL+ + + + L + KI H Sbjct: 30 FVAVDTEFRRRDTFYPEVALIQLAAAGQCWLLDPLT--LDDTQPLQKLFRQTDLIKILHS 87 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ V GV RP+ T+ A+ + +D + +LL I+++K + SDW Sbjct: 88 ASEDLEVFERWLGVLPRPMIDTQKAAAML-GLGFGLSYRDLVHDLLSIDVAKDETQSDWL 146 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199 L+D Q YA DV L + + G ++ L ++ Sbjct: 147 VRPLTDAQCHYAMQDVTFLAQCWPILEARAEASGYLSWILEESAAMVTGGRGPLAKFK 204 >gi|289570857|ref|ZP_06451084.1| conserved alanine rich protein [Mycobacterium tuberculosis T17] gi|289544611|gb|EFD48259.1| conserved alanine rich protein [Mycobacterium tuberculosis T17] Length = 443 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62 + V E AE R AVD E R ++Q+ GTV I ++ G Sbjct: 65 VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 124 Query: 63 APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + E I H D+ L G+R ++ T++A RL ++ L Sbjct: 125 LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 181 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ LLG+ ++K ++DWS L L YAA DV L LR + L G++D A Sbjct: 182 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 241 Query: 182 SCCNFL 187 L Sbjct: 242 QEFEHL 247 >gi|320163487|gb|EFW40386.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864] Length = 467 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 10/188 (5%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 E +P AA + I +DTE L +LC++QLS + ++ +P ++ Sbjct: 149 EAFLPILAAA---ETIGLDTEFLSFPRYTPQLCVLQLSTETDLGIVDALSI----SPEML 201 Query: 68 GMLVDEKREK--IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L EK I H D A+L+ G VF T+IA+ G ++ Sbjct: 202 KKLCLRICEKPVIVHSCSSDCAILYDIAGTLPAKVFDTQIAAAFC-YPIMMMGYGQLVET 260 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 L + + K+ +DWS L +++ YA SDVVHLHA+R + ++ LGR++ S Sbjct: 261 LFEVQVDKSLTLTDWSLRPLKKDEVAYAISDVVHLHAIRDKLNARIAELGRTEWFESEMA 320 Query: 186 FLMDRAEL 193 + A+L Sbjct: 321 SAVSPAKL 328 >gi|291299881|ref|YP_003511159.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728] gi|290569101|gb|ADD42066.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728] Length = 407 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 8/167 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E + R ++QL G GT + G ++ L L D E Sbjct: 43 ATGPVAVDAERASGFRYQPRAYLIQLRRAGAGTALVDP--TGFEDLRELNAALADT--EW 98 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ L G+R +F T++A+RL + GL +++LLG + K + Sbjct: 99 ILHAASQDLPCLAGE-GMRPPRLFDTELAARLCG--FERVGLAALVEKLLGFTLEKHHSA 155 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 +DWS L + L YAA DV L LR +L+ G+ D A Sbjct: 156 ADWSTRPLPADWLTYAALDVELLVELRDILDAELRLQGKRDWADEEF 202 >gi|308232210|ref|ZP_07664029.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu001] gi|308371097|ref|ZP_07667091.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu003] gi|308374662|ref|ZP_07667838.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu006] gi|308375511|ref|ZP_07668042.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu007] gi|308378065|ref|ZP_07668659.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu009] gi|308379281|ref|ZP_07668932.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu010] gi|308380440|ref|ZP_07669197.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu011] gi|308214618|gb|EFO74017.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu001] gi|308329844|gb|EFP18695.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu003] gi|308341104|gb|EFP29955.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu006] gi|308346112|gb|EFP34963.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu007] gi|308353627|gb|EFP42478.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu009] gi|308357474|gb|EFP46325.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu010] gi|308361428|gb|EFP50279.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu011] Length = 468 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62 + V E AE R AVD E R ++Q+ GTV I ++ G Sbjct: 65 VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 124 Query: 63 APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + E I H D+ L G+R ++ T++A RL ++ L Sbjct: 125 LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 181 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ LLG+ ++K ++DWS L L YAA DV L LR + L G++D A Sbjct: 182 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 241 Query: 182 SCCNFL 187 L Sbjct: 242 QEFEHL 247 >gi|332667981|ref|YP_004450769.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100] gi|332336795|gb|AEE53896.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100] Length = 395 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 3/168 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 ++ + D+E +G RLC++Q++ G I KN + M+ + K+ Sbjct: 23 IEWMCFDSEFVGEKRFTTRLCLIQVATRHGLFLIDPFP--LKNLDPFLEMIENPNIVKVT 80 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H G D +L+ +FG + F T+IA+ Y K ++ L IN++K+ +D Sbjct: 81 HAGENDYRLLYASFGTIPKNTFDTQIAAGFL-GYRYPLAFKKLVETELKINMNKSFTVAD 139 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 W A + QL+YA D+ L+ L L R R A L Sbjct: 140 WEARPFNQNQLKYAIQDIEPLYDLWKMQEADLLRKKRLHWAEEEFKVL 187 >gi|328885873|emb|CCA59112.1| Ribonuclease D [Streptomyces venezuelae ATCC 10712] Length = 427 Score = 171 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 10/178 (5%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM 69 I A A R +AVD E R +VQL G GT I + G + L Sbjct: 55 IAAFAAGR--GPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPV--GCPDLSGLGDA 110 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L E I H D+ L G+ +F T++A RL + GL ++ +LG Sbjct: 111 LA--GTEWILHAATQDLPCL-RDIGMLPTSLFDTELAGRLAG--FPRVGLGAMVESVLGY 165 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + K + DWS L + L+YAA DV L LR ++L R G+ + A + + Sbjct: 166 ALEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWAHQEFDAI 223 >gi|40063040|gb|AAR37896.1| ribonuclease D, putative [uncultured marine bacterium 560] Length = 358 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 3/169 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 ++A+DTE + LC+VQ++ I ++ + L L K E I H Sbjct: 32 SSLAIDTEFKRINTYYPELCLVQIATTQFAECIDVLSIN--DLEPLFEKLYHNKTEWIVH 89 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI L++ +F T+IA+ L Y Q + + L + + K+ DW Sbjct: 90 SARQDIEALYHLSKRIPVSLFDTQIAASLLN-YPLQISYQALTEILQDVLLDKSYTRFDW 148 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + L ++YA DV +L + +L + FL+D Sbjct: 149 TTRPLPANVVEYALDDVRYLLPNFEKLKHELTISKKIQWLDEETRFLLD 197 >gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C] gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C] Length = 294 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 10/191 (5%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +A+DTE+ R+R+C++QLS + I+ + L +L D R Sbjct: 28 ALAGERVLALDTESNSFHVYRERVCLLQLSTRTQDFVVDPISV---DVRPLGEILCD-GR 83 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H +D+ L +G R+ +F T IA+R R GL ++ G+ +SKA Sbjct: 84 EVVLHGADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVESHFGVRLSKAF 141 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE--- 192 Q SDW L+ +QL YAA D L L T +L G D A + Sbjct: 142 QRSDWGRRPLTPDQLAYAALDTHFLLPLFDLLTGELAARGALDEAWKESQRIASVVARER 201 Query: 193 -LDLLGWENVD 202 D GW V Sbjct: 202 VFDPEGWRRVK 212 >gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp. lyrata] gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp. lyrata] Length = 867 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 3/170 (1%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A R V+ AVD E + C++Q+S + P L Sbjct: 264 DLKELVAKLRGVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLRE 323 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K++KI H DI L FG+ V +F T ASR+ N L+ L+ G Sbjct: 324 IFKDPKKKKIMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLGRN--SLEFLLQHFCG 381 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + +K Q++DW L +E +YA D +L + +L+R+ + D Sbjct: 382 VTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDVMRLELERMAKDD 431 >gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana] gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana] Length = 870 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 3/174 (1%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A R V+ AVD E + C++Q+S + P L Sbjct: 268 DLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLRE 327 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K++K+ H DI L FG+ V +F T ASR+ ++ L+ L+ G Sbjct: 328 IFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCG 385 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + +K Q++DW L +E +YA D +L + +LQR+ + D T Sbjct: 386 VTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD 439 >gi|56460926|ref|YP_156207.1| ribonuclease D [Idiomarina loihiensis L2TR] gi|56179936|gb|AAV82658.1| Ribonuclease D [Idiomarina loihiensis L2TR] Length = 390 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 6/184 (3%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D+ C A A+D+E + +L ++Q+ T I +A + Sbjct: 18 TTTDDLQDLCQQAVKCGWFAIDSEFVRERTYYAQLGLLQIHANGTTAVIDPLADI--DLE 75 Query: 65 NLVGMLVDEKREKIFHYGRFDIA-VLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L ++ ++ E + H G DI + G + + +F ++IA+ + G + Sbjct: 76 PLWQLISGDEVETVLHAGGEDIELFFQQSSGRQPKQIFDSQIAAGFC-GLGDSMGYARLV 134 Query: 124 KELL-GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L G+ + K+ ++W LSDEQL YAA+D +L + + G D+ Sbjct: 135 DALFDGVELDKSLSRTNWLKRPLSDEQLDYAAADASYLAIMYPYLKALCEEKGVLDIVYE 194 Query: 183 CCNF 186 Sbjct: 195 ESQI 198 >gi|15239221|ref|NP_198440.1| 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein [Arabidopsis thaliana] Length = 838 Score = 170 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 3/174 (1%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A R V+ AVD E + C++Q+S + P L Sbjct: 236 DLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLRE 295 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K++K+ H DI L FG+ V +F T ASR+ ++ L+ L+ G Sbjct: 296 IFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCG 353 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + +K Q++DW L +E +YA D +L + +LQR+ + D T Sbjct: 354 VTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD 407 >gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana] Length = 834 Score = 170 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 3/174 (1%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A R V+ AVD E + C++Q+S + P L Sbjct: 231 DLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLRE 290 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K++K+ H DI L FG+ V +F T ASR+ ++ L+ L+ G Sbjct: 291 IFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCG 348 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + +K Q++DW L +E +YA D +L + +LQR+ + D T Sbjct: 349 VTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD 402 >gi|15609818|ref|NP_217197.1| hypothetical protein Rv2681 [Mycobacterium tuberculosis H37Rv] gi|15842219|ref|NP_337256.1| ribonuclease D, putative [Mycobacterium tuberculosis CDC1551] gi|148662522|ref|YP_001284045.1| putative ribonuclease D [Mycobacterium tuberculosis H37Ra] gi|148823871|ref|YP_001288625.1| hypothetical protein TBFG_12696 [Mycobacterium tuberculosis F11] gi|253798237|ref|YP_003031238.1| hypothetical protein TBMG_01292 [Mycobacterium tuberculosis KZN 1435] gi|254232787|ref|ZP_04926114.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis C] gi|254365342|ref|ZP_04981387.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis str. Haarlem] gi|289444223|ref|ZP_06433967.1| conserved alanine rich protein [Mycobacterium tuberculosis T46] gi|289448336|ref|ZP_06438080.1| conserved alanine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289553533|ref|ZP_06442743.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 605] gi|289575379|ref|ZP_06455606.1| conserved alanine rich protein [Mycobacterium tuberculosis K85] gi|289746482|ref|ZP_06505860.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289751333|ref|ZP_06510711.1| conserved alanine rich protein [Mycobacterium tuberculosis T92] gi|289754783|ref|ZP_06514161.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308369826|ref|ZP_07419200.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu002] gi|308372367|ref|ZP_07428406.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu004] gi|308373474|ref|ZP_07432469.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu005] gi|308377095|ref|ZP_07441113.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu008] gi|308405939|ref|ZP_07494488.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu012] gi|2181972|emb|CAB09492.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882508|gb|AAK47070.1| ribonuclease D, putative [Mycobacterium tuberculosis CDC1551] gi|124601846|gb|EAY60856.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis C] gi|134150855|gb|EBA42900.1| conserved hypothetical alanine rich protein [Mycobacterium tuberculosis str. Haarlem] gi|148506674|gb|ABQ74483.1| putative ribonuclease D [Mycobacterium tuberculosis H37Ra] gi|148722398|gb|ABR07023.1| conserved alanine rich protein [Mycobacterium tuberculosis F11] gi|253319740|gb|ACT24343.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 1435] gi|289417142|gb|EFD14382.1| conserved alanine rich protein [Mycobacterium tuberculosis T46] gi|289421294|gb|EFD18495.1| conserved alanine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289438165|gb|EFD20658.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 605] gi|289539810|gb|EFD44388.1| conserved alanine rich protein [Mycobacterium tuberculosis K85] gi|289687010|gb|EFD54498.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289691920|gb|EFD59349.1| conserved alanine rich protein [Mycobacterium tuberculosis T92] gi|289695370|gb|EFD62799.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308326264|gb|EFP15115.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu002] gi|308333435|gb|EFP22286.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu004] gi|308337502|gb|EFP26353.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu005] gi|308348930|gb|EFP37781.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu008] gi|308365086|gb|EFP53937.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu012] gi|323718676|gb|EGB27838.1| alanine rich protein [Mycobacterium tuberculosis CDC1551A] gi|326904295|gb|EGE51228.1| conserved alanine rich protein [Mycobacterium tuberculosis W-148] gi|328458009|gb|AEB03432.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 4207] Length = 438 Score = 170 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62 + V E AE R AVD E R ++Q+ GTV I ++ G Sbjct: 35 VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 94 Query: 63 APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + E I H D+ L G+R ++ T++A RL ++ L Sbjct: 95 LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 151 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ LLG+ ++K ++DWS L L YAA DV L LR + L G++D A Sbjct: 152 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 211 Query: 182 SCCNFL 187 L Sbjct: 212 QEFEHL 217 >gi|119717898|ref|YP_924863.1| 3'-5' exonuclease [Nocardioides sp. JS614] gi|119538559|gb|ABL83176.1| 3'-5' exonuclease [Nocardioides sp. JS614] Length = 442 Score = 170 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 11/199 (5%) Query: 7 HEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63 E + C A +A+D E R ++QL G GT + I Sbjct: 48 TEAGLAEVCERIAAGTGPVAIDAERASGYRYSSRAYLIQLRREGSGTFLVDPIPFVI--L 105 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L L E E I H D+ L G+ +F T++A RL + GL + Sbjct: 106 PQLQEAL--EGTEWILHAATQDLPCL-AEVGLLPSRLFDTELAGRLLGY--PRVGLATLV 160 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + LLG ++K + DWS L + L+YAA DV L LR ++L+ G+++ A Sbjct: 161 ETLLGSRLAKEHSAVDWSTRPLPEPWLEYAALDVEVLAELRDLLADELETAGKAEWARQE 220 Query: 184 CNFLMDRAELD-LLGWENV 201 + L + + + W Sbjct: 221 FDALRSFVQAERVDAWRRT 239 >gi|296139599|ref|YP_003646842.1| 3'-5' exonuclease [Tsukamurella paurometabola DSM 20162] gi|296027733|gb|ADG78503.1| 3'-5' exonuclease [Tsukamurella paurometabola DSM 20162] Length = 404 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 10/182 (5%) Query: 13 AECAA---RYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVG 68 AECAA R IA+DTE R ++Q+ G G + I + AP + Sbjct: 32 AECAAALRRGTGPIALDTERASGFTYSSRAYLIQIKRTGSGLFLLDPIHEPEGLAPVIEA 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + E + H D+ L G +F T++A RL + L E G Sbjct: 92 L---RGVEWVLHAADQDLPCLRDD-GFVCDALFDTELAGRLLGE--PRVNLAAMTSEFTG 145 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++K ++DWS L + L YAA DV L LR + E+L G+ A + Sbjct: 146 YALAKGHGAADWSTRPLPHDWLNYAALDVELLVDLRDEAYERLDAAGKLPWALEEFEYAR 205 Query: 189 DR 190 R Sbjct: 206 TR 207 >gi|31793853|ref|NP_856346.1| hypothetical protein Mb2700 [Mycobacterium bovis AF2122/97] gi|121638556|ref|YP_978780.1| hypothetical protein BCG_2694 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991048|ref|YP_002645737.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31619447|emb|CAD94885.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium bovis AF2122/97] gi|121494204|emb|CAL72682.1| Conserved hypothetical alanine rich protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774163|dbj|BAH26969.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 438 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62 + V E AE R AVD E R ++Q+ GTV I ++ G Sbjct: 35 VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 94 Query: 63 APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + E I H D+ L G+R ++ T++A RL ++ L Sbjct: 95 LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 151 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ LLG+ ++K ++DWS L L YAA DV L LR + L G++D A Sbjct: 152 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAVISRVLAEQGKTDWAA 211 Query: 182 SCCNFL 187 L Sbjct: 212 QEFEHL 217 >gi|284990407|ref|YP_003408961.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160] gi|284063652|gb|ADB74590.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160] Length = 418 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 12/180 (6%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRIAAGQKNAPNLVGM 69 AE A +AVD E R +VQL G G +D I + +V Sbjct: 47 AEALAAGSGPVAVDAERASGYRYGQRAYLVQLRRVGTGTGLIDPIPLPDLSVVQSAIVDA 106 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 E + H D+ L G+ +F T++A+RL + GL ++ LLG Sbjct: 107 ------EWVLHAASQDLPSL-AEVGLVPARLFDTELAARLAG--LPRVGLGAVVESLLGY 157 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K ++DWS L +E L YAA DV L LR L+ G+++ A ++ Sbjct: 158 RLEKGHSAADWSTRPLPEEWLVYAALDVEVLVDLRDALAAVLEEQGKTEWARQEFAAILA 217 >gi|307107266|gb|EFN55509.1| hypothetical protein CHLNCDRAFT_133914 [Chlorella variabilis] Length = 1092 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 61/153 (39%), Gaps = 2/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +AVD E + C++QLS + I +A P L + D K+ H Sbjct: 270 LAVDLEAHSYRSFQGFCCLMQLSTRSEDLVIDTLALRAHVGPALAPIFADPGVVKVLHGA 329 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+A L FG+ + +F T A+R+ HGL L G K Q +DW Sbjct: 330 DSDVAWLQRDFGLFLANLFDTGQAARVLGMRG--HGLAHLLDFYCGFKADKRFQLADWRV 387 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L+ E L YA SD HL + L G Sbjct: 388 RPLTPEMLHYARSDTHHLLYCYDKLKAALAEAG 420 >gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K] gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K] Length = 288 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 10/191 (5%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +A+DTE+ R+R+C++QLS + I+ + L +L D R Sbjct: 24 ALAGERVLALDTESNSFHVYRERVCLLQLSTRAQDFVVDPISV---DVRPLGEILCD-GR 79 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H +D+ L +G R+ +F T IA+R R GL ++ G+ +SKA Sbjct: 80 EVVLHGADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVEAHFGVRLSKAF 137 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE--- 192 Q SDW L+ +QL YAA D L L T +L G + A + Sbjct: 138 QRSDWGRRPLTPDQLAYAALDTHFLLPLFDLLTGELATRGALEEAWKESQRIASVVARER 197 Query: 193 -LDLLGWENVD 202 D GW + Sbjct: 198 VFDPEGWRRIK 208 >gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica] Length = 354 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 A+DTE L R+ LC++Q S +V I + ++ L L + Sbjct: 21 SPVCAIDTEADSLHRYRESLCLIQFSAKGESVLIDPL--VIEDLSPLGSYLSEATV--WM 76 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H +D+ + FG + V+ T+I +RL + GL D + G+ +SK+ Q +D Sbjct: 77 HGADYDMTMFKRQFGDLPKVVYDTQIGARLLGA--RRFGLGDLVSLYFGVELSKSSQKAD 134 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 W LS + ++YA +DV +L + KL+ LGR + C R Sbjct: 135 WGKRPLSPKMIEYALNDVHYLLEMGDLIVTKLKDLGRYEWFLESCTAARRRV 186 >gi|229820453|ref|YP_002881979.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333] gi|229566366|gb|ACQ80217.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333] Length = 416 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 8/173 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72 E AR A+AVD E R +VQ+ G GT I IA + L L D Sbjct: 29 EAVARADGAVAVDAERASGYRYGQRAYLVQIRRLGAGTALIDPIAC--PDLSGLSAALGD 86 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E + H D+ L G+ R VF T++A RL + GL +++ LG+ ++ Sbjct: 87 A--EWVLHAANQDLPCL-AEVGLVPRHVFDTELAGRLLG--RERVGLAAIVEQELGLTLA 141 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 K + DWS L ++ L+YAA DV L LR L R G+++ A Sbjct: 142 KEHSAVDWSTRPLREDWLRYAALDVEVLVELRDALERDLVRAGKAEWAREEFE 194 >gi|148272845|ref|YP_001222406.1| putative ribonuclease D [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830775|emb|CAN01715.1| putative ribonuclease D [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 496 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 8/173 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A IAVD E R ++Q+ G GT A G L ++ D Sbjct: 116 EAIAAGTGPIAVDAERASGFRYSQRAYLIQVFRRGAGTFLFDPPAVGG--FSELDAVIRD 173 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E + H D+A L G+ + +F T++ASRL + GL ++ELLGI+++ Sbjct: 174 --VEWVLHAASQDLACL-REVGLDPQRIFDTELASRLLG--LPRVGLGTVVEELLGIHLA 228 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 K ++DWS L L YAA DV L +R + +L+ G++ +A Sbjct: 229 KEHSAADWSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTGIAEQEFA 281 >gi|15827504|ref|NP_301767.1| hypothetical protein ML1040 [Mycobacterium leprae TN] gi|221229981|ref|YP_002503397.1| hypothetical protein MLBr_01040 [Mycobacterium leprae Br4923] gi|699161|gb|AAA62926.1| u1764u [Mycobacterium leprae] gi|13093054|emb|CAC31421.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933088|emb|CAR71135.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 429 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 5/183 (2%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 AE + AVDTE +R ++Q+ GTV I ++ G L + Sbjct: 39 AAERLDQGYGPFAVDTERASGFRYSNRAYLIQIRRANAGTVLIDPVSHGNDPLTALRPVA 98 Query: 71 VD-EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 K E I H D+ L G+R ++ T++A RL ++ L ++ LLG Sbjct: 99 EVISKDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLATMVQRLLGF 155 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++K ++DWS L + L YAA DV L LR ++ L ++D AT N+L Sbjct: 156 ELAKGHGAADWSKRPLPSDWLNYAALDVELLIELRTAISKVLAEQDKTDWATQEFNYLRT 215 Query: 190 RAE 192 A Sbjct: 216 YAT 218 >gi|331696705|ref|YP_004332944.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190] gi|326951394|gb|AEA25091.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190] Length = 394 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 73/178 (41%), Gaps = 7/178 (3%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71 A A +AVD E R +VQL G G+ I I G + L L Sbjct: 24 AAAFAAGSGPVAVDAERASGFRYSQRAYLVQLRRAGAGSALIDPIPLGS-DLSALSPALT 82 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 E + H D+ L G+ +F T++A RL + GL +++LLG+ + Sbjct: 83 GP--EWVLHAASQDLPCL-AEVGLAPTSLFDTELAGRLAG--LPRVGLGPMVEQLLGLAL 137 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 K ++DWS L ++ L YAA DV L LR L G+S+ A + Sbjct: 138 EKGHGAADWSRRPLPEDWLVYAALDVEVLIELRDLLAGMLAEQGKSEFAAQEFEAVRT 195 >gi|295835905|ref|ZP_06822838.1| ribonuclease D [Streptomyces sp. SPB74] gi|295825772|gb|EFG64472.1| ribonuclease D [Streptomyces sp. SPB74] Length = 430 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 10/178 (5%) Query: 11 IPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLV 67 + AA +AVD E R +VQL G GT I +A + L Sbjct: 54 LADAVAAFAGGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC--PDLSGLG 111 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 L E H D+ L G+ +F T++A RL + GL ++ +L Sbjct: 112 AALA--SAEWDLHAATQDLPCL-REIGMVPHTLFDTELAGRLAG--FPRVGLGAMVENVL 166 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 G + K + DWS L + L+YAA DV L LR ++L R G+ + A + Sbjct: 167 GYTLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWALEEFD 224 >gi|215428107|ref|ZP_03426026.1| hypothetical protein MtubT9_17623 [Mycobacterium tuberculosis T92] gi|297635289|ref|ZP_06953069.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN 4207] Length = 416 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62 + V E AE R AVD E R ++Q+ GTV I ++ G Sbjct: 13 VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 72 Query: 63 APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + E I H D+ L G+R ++ T++A RL ++ L Sbjct: 73 LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 129 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ LLG+ ++K ++DWS L L YAA DV L LR + L G++D A Sbjct: 130 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 189 Query: 182 SCCNFL 187 L Sbjct: 190 QEFEHL 195 >gi|290956585|ref|YP_003487767.1| exonuclease [Streptomyces scabiei 87.22] gi|260646111|emb|CBG69204.1| putative exonuclease [Streptomyces scabiei 87.22] Length = 397 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 8/170 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E R +VQL G GT I +A + L L E Sbjct: 28 GTGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC--PDLSGLGEALS--GVEW 83 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L + +F T++A RL + GL ++ +LG + K + Sbjct: 84 VLHAATQDLPCL-REIDMVPTRIFDTELAGRLAG--FPRVGLGAMVEGVLGYVLEKGHSA 140 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 DWS L + L+YAA DV L LR ++L R G+ + A + + Sbjct: 141 VDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQEFDAI 190 >gi|283781120|ref|YP_003371875.1| 3'-5' exonuclease [Pirellula staleyi DSM 6068] gi|283439573|gb|ADB18015.1| 3'-5' exonuclease [Pirellula staleyi DSM 6068] Length = 399 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 3/176 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA DTE + + LC++Q++ DG + II Q +P +L + RE Sbjct: 19 LASAEIIAFDTEFVSEDSYQPELCLIQVAA-DGNLAIIDPLEVQDLSP-FWNLLTEPGRE 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 + H GR + F G R F +IA+ L + L+G ++ K + Sbjct: 77 TLVHAGREEFRFCFKGAGRRPHKWFDVQIAAGLIGMEFPA-SYGTLAQRLIGKSLPKDET 135 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +DW LS QL+YA DV+ L +R KL++LGR + D+ E Sbjct: 136 RTDWRRRPLSQRQLEYALLDVLDLEQIRDVLVGKLEKLGRLSWLDTELAAWQDQIE 191 >gi|297203084|ref|ZP_06920481.1| ribonuclease D [Streptomyces sviceus ATCC 29083] gi|297148288|gb|EDY56116.2| ribonuclease D [Streptomyces sviceus ATCC 29083] Length = 262 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 11/184 (5%) Query: 8 EGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63 + D AE A + +AVD E R +VQL G GT I +A + Sbjct: 48 DEDALAEVIAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC--PDL 105 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L L E + H D+ L G+ +F T++A R+ + GL + Sbjct: 106 SGLGEALS--GAEWVLHAATQDLPCL-REIGMIPSRLFDTELAGRIAG--FPRVGLGAMV 160 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + +LG + K + DWS L + L+YAA DV L LR ++L R G+ + A Sbjct: 161 EGVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWALQE 220 Query: 184 CNFL 187 + + Sbjct: 221 FDAI 224 >gi|225156183|ref|ZP_03724663.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2] gi|224803073|gb|EEG21316.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2] Length = 389 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 6/174 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 P A V +A+DTE + + R+C++Q DG V ++ + P L L Sbjct: 40 PFLAALDRVKEVALDTEADNMYHYQTRVCLLQFLI-DGEVWLVDLMTPLPLKP-LWEKLA 97 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + + H FD+ +L G R + +F T +A++L + GL L E G+ + Sbjct: 98 TKHL--VMHGSDFDLRLLHDLCGFRPKSLFDTMLAAQLLNRQ--RIGLAALLSEHFGVTL 153 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 K Q ++WS L+ + L YA+ DV HL ALR T +L RLGR + C Sbjct: 154 DKGGQKANWSKRPLTPKLLDYASLDVWHLPALRDILTRELSRLGRMEWMEQQCR 207 >gi|323359928|ref|YP_004226324.1| ribonuclease D [Microbacterium testaceum StLB037] gi|323276299|dbj|BAJ76444.1| ribonuclease D [Microbacterium testaceum StLB037] Length = 398 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 6/179 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 ++ A +AVD E R ++Q+ D V + + + +P L L Sbjct: 16 ASDRLAAGTGPVAVDVERASGFRYSQRAYLIQVFRRDAGVFLFDPSTIEDFSP-LQAALA 74 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D E +FH D+ L G+ +F T++ +RL + GL +++ LGI + Sbjct: 75 D--VEWVFHAASQDLPSL-RERGLEPPRIFDTELGARLLGH--ERVGLGAVVEQTLGITL 129 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +KA ++DWS L L+YAA DV HL +R +L+ +++ A +++R Sbjct: 130 AKAHSAADWSTRPLPASWLEYAALDVEHLIDVRDVLVAELEEQQKTEFARQEFQAVLER 188 >gi|271967979|ref|YP_003342175.1| ribonuclease D-like protein [Streptosporangium roseum DSM 43021] gi|270511154|gb|ACZ89432.1| Ribonuclease D-like protein [Streptosporangium roseum DSM 43021] Length = 408 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 8/174 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G G+ I + L +L Sbjct: 35 AEGTGPVAVDAERASGYRYSGRAYLVQLRRAGAGSALIDPTYC--PDLSELDTVLA--GA 90 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G R +F T++A RL + GL ++ +LG+ + K Sbjct: 91 EVVLHAASQDLPCL-AELGFHPRELFDTELAGRLLGY--ERVGLGMMVENVLGLKLEKGH 147 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++DWS L ++ L+YAA DV L LR E+L+ G+ A ++ Sbjct: 148 SAADWSTRPLPEDWLRYAALDVEVLVELRDVLHEELKTSGKLAWAQEEFASVLA 201 >gi|291448576|ref|ZP_06587966.1| ribonuclease D [Streptomyces roseosporus NRRL 15998] gi|291351523|gb|EFE78427.1| ribonuclease D [Streptomyces roseosporus NRRL 15998] Length = 373 Score = 169 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 8/172 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G G+ + + G + L L + Sbjct: 56 AAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALVDPV--GCPDLSGLGTAL--DGT 111 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 112 EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAG--FPRVGLGAMVENVLGYALEKGH 168 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + DWS L + L+YAA DV L LR E+L R G+ + A + + Sbjct: 169 SAVDWSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGKLEWAREEFDAI 220 >gi|333023774|ref|ZP_08451838.1| putative ribonuclease [Streptomyces sp. Tu6071] gi|332743626|gb|EGJ74067.1| putative ribonuclease [Streptomyces sp. Tu6071] Length = 431 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 8/170 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G GT I +A + L L + Sbjct: 62 ASGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC--PDLSGLGAALANA-- 117 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 118 EWDLHAATQDLPCL-REIGMVPHSLFDTELAGRLAG--FPRVGLGAMVENVLGYTLEKGH 174 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + DWS L + L+YAA DV L LR ++L+R G+ + A + Sbjct: 175 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWALEEFD 224 >gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] Length = 653 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 91/208 (43%), Gaps = 11/208 (5%) Query: 4 IRVHEGDI-PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ P + +A+DTET GL P DRL ++Q+S V +I AA + Sbjct: 79 IISQPSDLTPYFHTVKEAPLLAIDTETTGLDPHSDRLRLIQISAPGIPVLVIDCAAFLPD 138 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLK 120 + L++ EKIFH RFD+ L G+ PVF T +A++L R + GL Sbjct: 139 GFACLKELLNTPSEKIFHNARFDLQFLM-GIGIDCFPVFDTMLAAQLLRPCGGPLKAGLA 197 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 LGI + K +Q+ W + L+ QL YAA D L L L R G A Sbjct: 198 VVADHYLGIKLDKTEQTGSWDSASLTGSQLAYAALDAWILLKLYDVMNPLLARHGLGRTA 257 Query: 181 TSCCNFLMDRAE-------LDLLGWENV 201 + + A LDL W+ + Sbjct: 258 SIEFACVSAIARTEYDGINLDLEKWDEL 285 >gi|170782038|ref|YP_001710370.1| putative ribonuclease [Clavibacter michiganensis subsp. sepedonicus] gi|169156606|emb|CAQ01757.1| putative ribonuclease [Clavibacter michiganensis subsp. sepedonicus] Length = 443 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 8/173 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A IAVD E R ++Q+ G GT A G + L ++ D Sbjct: 63 EAIAAGTGPIAVDAERASGFRYSQRAYLIQVFRRGAGTFLFDPPAIG--DFSELDEVIRD 120 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E + H D+A L G+ + +F T++ASRL + GL ++ELLGI+++ Sbjct: 121 --VEWVLHAASQDLACL-REVGLDPQRIFDTELASRLLG--LPRVGLGTVVEELLGIHLA 175 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 K ++DWS L L YAA DV L +R + +L+ G++ +A Sbjct: 176 KEHSAADWSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTAIAEQEFA 228 >gi|302537554|ref|ZP_07289896.1| ribonuclease D [Streptomyces sp. C] gi|302446449|gb|EFL18265.1| ribonuclease D [Streptomyces sp. C] Length = 428 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 8/170 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G G+ I + G + L L Sbjct: 60 AAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPV--GCPDLSALGEALS--GT 115 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 116 EWILHAATQDLPCL-REIGMVPTSLFDTELAGRLAG--FPRVGLGAMVEGVLGYALEKGH 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 + DWS L + L+YAA DV L LR ++L R G+ + A + Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQEFD 222 >gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5] gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5] Length = 296 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 6/170 (3%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R +A+DTE+ R+R+C++Q+S + +A + L +L D RE Sbjct: 27 RAEPVVALDTESNSFHVYRERICLLQVSTRAADYIVDPLAV---DPSPLGEVLCD-GRET 82 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H +D+ L +G + +F T A+R R GL ++ G+ +SK Q Sbjct: 83 VLHGADYDVRCLRREYGWHLPRLFDTMAAAR--RLGRQGLGLSALVEAHFGVRLSKTFQR 140 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 SDW L+ QL YAA D +L ALR +L LG S+ A + Sbjct: 141 SDWGQRPLTAAQLAYAALDTHYLLALRDMLAGELDTLGASEQARREFERI 190 >gi|40063706|gb|AAR38487.1| ribonuclease D, putative [uncultured marine bacterium 583] Length = 341 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 3/174 (1%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A+DTE + +LC+VQ++ I ++ + L L K E I H Sbjct: 19 SRLAIDTEFKRINTYYPQLCLVQIATTHSLECIDVLSIN--DLEPLFEKLYRSKTEWIVH 76 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 R DI ++ +F T+IA+ L Y Q + + L I + K+ DW Sbjct: 77 SARQDIEAFYHLSKRIPVSLFDTQIAASLLN-YPLQISYQLITEVLQDIQLDKSFTRFDW 135 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 + L + ++YA DV +L + +L + FL+D+ + Sbjct: 136 TTRPLPADVVEYALDDVRYLLPNFEKLKHELTISKKIQWLDEETRFLLDQDLYE 189 >gi|304312978|ref|YP_003812576.1| Ribonuclease D [gamma proteobacterium HdN1] gi|301798711|emb|CBL46944.1| Ribonuclease D [gamma proteobacterium HdN1] Length = 377 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 1/176 (0%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 +A+DTE + L ++Q++ D + I I A + + + +++ Sbjct: 20 LSQQSVVALDTEFMRSDTFYPILGLLQVASQDTVLLIDGIDAVCMSIAAEMLLNENQQPT 79 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 + H D+ V + + T++A+ + Q L++ L LG+++ K + Sbjct: 80 WVLHSCAEDLEVALNQWDALPNRLVDTQLAAAHL-GHPRQMSLQNLLAVELGVHLPKDET 138 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 SDW LS QL YAA DV HL L + + L R T C L+ +A Sbjct: 139 RSDWCKRPLSSAQLSYAAGDVAHLLPLWEKLSHTLHERDRMSWFTEDCAKLIAKAR 194 >gi|219558691|ref|ZP_03537767.1| hypothetical protein MtubT1_15842 [Mycobacterium tuberculosis T17] Length = 379 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 5/178 (2%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 AE R AVD E R ++Q+ GTV I ++ G L + Sbjct: 9 AAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVA 68 Query: 71 VDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 E I H D+ L G+R ++ T++A RL ++ L ++ LLG+ Sbjct: 69 EVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAAMVERLLGL 125 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++K ++DWS L L YAA DV L LR + L G++D A L Sbjct: 126 GLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHL 183 >gi|167970096|ref|ZP_02552373.1| conserved alanine rich protein [Mycobacterium tuberculosis H37Ra] gi|215404645|ref|ZP_03416826.1| hypothetical protein Mtub0_13363 [Mycobacterium tuberculosis 02_1987] gi|215431621|ref|ZP_03429540.1| hypothetical protein MtubE_13303 [Mycobacterium tuberculosis EAS054] gi|254551737|ref|ZP_05142184.1| hypothetical protein Mtube_14982 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187698|ref|ZP_05765172.1| hypothetical protein MtubCP_16944 [Mycobacterium tuberculosis CPHL_A] gi|260201808|ref|ZP_05769299.1| hypothetical protein MtubT4_17360 [Mycobacterium tuberculosis T46] gi|260205991|ref|ZP_05773482.1| hypothetical protein MtubK8_17005 [Mycobacterium tuberculosis K85] gi|294994226|ref|ZP_06799917.1| 3'-5' exonuclease [Mycobacterium tuberculosis 210] gi|297732285|ref|ZP_06961403.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN R506] gi|313659618|ref|ZP_07816498.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN V2475] Length = 404 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 5/178 (2%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 AE R AVD E R ++Q+ GTV I ++ G L + Sbjct: 9 AAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVA 68 Query: 71 VDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 E I H D+ L G+R ++ T++A RL ++ L ++ LLG+ Sbjct: 69 EVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAAMVERLLGL 125 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++K ++DWS L L YAA DV L LR + L G++D A L Sbjct: 126 GLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHL 183 >gi|318061059|ref|ZP_07979780.1| ribonuclease D [Streptomyces sp. SA3_actG] gi|318079172|ref|ZP_07986504.1| ribonuclease D [Streptomyces sp. SA3_actF] Length = 431 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 8/168 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E R +VQL G GT I +A + L L + E Sbjct: 64 GSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC--PDLSGLGAALANA--EW 119 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 H D+ L G+ +F T++A RL + GL ++ +LG + K + Sbjct: 120 DLHAATQDLPCL-REIGMVPHSLFDTELAGRLAG--FPRVGLGAMVENVLGYTLEKGHSA 176 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 DWS L + L+YAA DV L LR ++L+R G+ + A + Sbjct: 177 VDWSTRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWALEEFD 224 >gi|187735079|ref|YP_001877191.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835] gi|187425131|gb|ACD04410.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835] Length = 352 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 6/178 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 AA+ + +D E L ++++C++Q + G+ I ++ ++ L + + Sbjct: 15 AAAQPAGRVVLDLEADSLHRYQEKICLIQYADETGSCLIDPLS--IEDMGPFYNWLKETE 72 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 H +D+++ + ++ T+ A+RL Q GL ++ GI +SK+ Sbjct: 73 V--WMHGADYDMSLFQNAWETLPAMIWDTQTAARLLG--FRQFGLAALVEHFHGITLSKS 128 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 Q +DW+ LS + YA +DV ++ + + T L++ GR C M+RA Sbjct: 129 SQKADWARRPLSPTMVTYALNDVNYMLDMADKLTAALRKKGRMGWFEEICRHSMERAR 186 >gi|307325177|ref|ZP_07604381.1| 3'-5' exonuclease [Streptomyces violaceusniger Tu 4113] gi|306889323|gb|EFN20305.1| 3'-5' exonuclease [Streptomyces violaceusniger Tu 4113] Length = 425 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 11/181 (6%) Query: 8 EGDIPAECAA---RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63 + D AE A +AVD E R +VQL G GT I + G + Sbjct: 44 DADALAEVIATFAAGHGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV--GCPDL 101 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D E + H D+ L G+ +F T++A RL + GL + Sbjct: 102 SGLGAAIADA--EWVLHAATQDLPCL-RDIGMIPARIFDTELAGRLAG--FARVGLGAMV 156 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + +LG + K + DWS L + L YAA DV L LR E+L+R + + A Sbjct: 157 ENILGYALEKGHSAVDWSTRPLPEPWLHYAALDVELLVDLRDALEEELERQSKLEWAHQE 216 Query: 184 C 184 Sbjct: 217 F 217 >gi|302522528|ref|ZP_07274870.1| ribonuclease D [Streptomyces sp. SPB78] gi|302431423|gb|EFL03239.1| ribonuclease D [Streptomyces sp. SPB78] Length = 431 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 8/168 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E R +VQL G GT I +A + L L + E Sbjct: 64 GSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC--PDLSGLGAALANA--EW 119 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 H D+ L G+ +F T++A RL + GL ++ +LG + K + Sbjct: 120 DLHAATQDLPCL-REIGMVPHSLFDTELAGRLAG--FPRVGLGAMVENVLGYTLEKGHSA 176 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 DWS L + L+YAA DV L LR ++L+R G+ + A + Sbjct: 177 VDWSTRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWALEEFD 224 >gi|296120940|ref|YP_003628718.1| ribonuclease D [Planctomyces limnophilus DSM 3776] gi|296013280|gb|ADG66519.1| Ribonuclease D [Planctomyces limnophilus DSM 3776] Length = 423 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 4/190 (2%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + A C + R + DTE + R LC++QL+ D V + ++ Sbjct: 7 TQQHEFEAFCKSIRQAGIVGFDTEFISEFTWRPELCLLQLATPDRAVLVDPFEV--RDLA 64 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +++D + H GR + G +IA R + G +K Sbjct: 65 PWWEIMLDPDVVVVAHGGREEARFCVTNTGQAPVNFKDVQIAEGF-RGRSFPLGYDALVK 123 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 +LG + SDW L+ Q+ YA DV H+ + + + L++ R Sbjct: 124 RVLGHKSHGKETRSDWRRRPLTKSQVHYALEDVQHILPIWAKQSADLKKKNRLAWVEDEF 183 Query: 185 NFLMDRAELD 194 L+ L+ Sbjct: 184 TRLVRDVVLE 193 >gi|319950372|ref|ZP_08024289.1| ribonuclease D-like protein [Dietzia cinnamea P4] gi|319435942|gb|EFV91145.1| ribonuclease D-like protein [Dietzia cinnamea P4] Length = 210 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 73/204 (35%), Positives = 108/204 (52%), Gaps = 7/204 (3%) Query: 3 TIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 T ++ EGDI A Y+ A IAVDTET GL DRL ++QLS ++R++AG Sbjct: 6 THQILEGDIDAPTFEAYISAGRIAVDTETSGLSWAADRLNLIQLSAQSVGGSLVRLSAGA 65 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHG 118 AP L +L KIFH+ FD+ + + + + CTK AS+L + QH Sbjct: 66 --APLLKDLLESRDVVKIFHFAPFDLRFITQLGVAQAQNIRCTKTASKLLDPQLDPKQHS 123 Query: 119 LKDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L+ L LG+ I+K + ++SDWSA LSD Q++YA DV HL L + ++L+ Sbjct: 124 LRALLLRKLGVEITKGEARTSDWSARSLSDSQIRYALDDVAHLERLHSKLEKELEERSLI 183 Query: 178 DLATSCCNFLMDRAELDLLGWENV 201 +L C+++ A L+ G N Sbjct: 184 ELYRQICDYIPIDALLETSGVPNP 207 >gi|149911424|ref|ZP_01900042.1| RNase D, processes tRNA precursor [Moritella sp. PE36] gi|149805532|gb|EDM65537.1| RNase D, processes tRNA precursor [Moritella sp. PE36] Length = 376 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 7/178 (3%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A+CA V+ +A+DTE + L + QL G T + +A ++ +L +L Sbjct: 17 AQCA--EVEVLAIDTEFIRQRTYYPILGLFQLYTGTETYLVDPLAV--EDLSSLWQLL-- 70 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H D+ V T+IA+ ++ + E I + Sbjct: 71 DRHPVVLHACSEDLDVFMTVANKFPDFFHDTQIAAAFCGLGSSLG-FGGLVAEYQKITLD 129 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K + S+W A L+++QL YAA+DV HL + KL LG D + L R Sbjct: 130 KGESRSNWLARPLTEKQLSYAAADVYHLLPCWNELEAKLNELGYYDYYLQELDNLRRR 187 >gi|239991576|ref|ZP_04712240.1| putative ribonuclease D [Streptomyces roseosporus NRRL 11379] Length = 384 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 8/172 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G G+ + + G + L L + Sbjct: 16 AAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALVDPV--GCPDLSGLGTAL--DGT 71 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 72 EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAG--FPRVGLGAMVENVLGYALEKGH 128 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + DWS L + L+YAA DV L LR E+L R G+ + A + + Sbjct: 129 SAVDWSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGKLEWAREEFDAI 180 >gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1] gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1] Length = 288 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 10/191 (5%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +A+DTE+ R+R+C++QLS + I+ + L +L D R Sbjct: 24 ALAGERVLALDTESNSFHVYRERVCLLQLSTRAQDFVVDPISV---DVRPLGEILCD-GR 79 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H +D+ L +G R+ +F T IA+R R GL ++ G+ +SKA Sbjct: 80 EVVLHGADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVEAHFGVRLSKAF 137 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE--- 192 Q SDW L+ +QL YA+ D L L T +L G + A + Sbjct: 138 QRSDWGRRPLTPDQLAYASLDTHFLLPLFDLLTGELATRGALEEAWKESQRIASVVARER 197 Query: 193 -LDLLGWENVD 202 D GW + Sbjct: 198 VFDPEGWRRIK 208 >gi|237808321|ref|YP_002892761.1| ribonuclease D [Tolumonas auensis DSM 9187] gi|237500582|gb|ACQ93175.1| ribonuclease D [Tolumonas auensis DSM 9187] Length = 365 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 3/165 (1%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 +DTE + + +L ++QL I +A N L + + R +FH + Sbjct: 27 LDTEFIRVSTYFPKLGLLQLHLNAVDYLIDPLAINSINL--LWDAIFSDHRLFVFHSCKE 84 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 D+ VL VF T++A+ Y G ++++ + ++K Q +DW A Sbjct: 85 DLDVLQVCAQKLPGRVFDTQVAAAFL-GYGASLGYAGLVEKVCDVTVAKDQTLTDWLARP 143 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 L+ Q YAA DV +L L +++L G+++ L++ Sbjct: 144 LTAAQKLYAAKDVSYLQYLYDHLSQELNTTGKTEWFNEEMTALLE 188 >gi|312196135|ref|YP_004016196.1| 3'-5' exonuclease [Frankia sp. EuI1c] gi|311227471|gb|ADP80326.1| 3'-5' exonuclease [Frankia sp. EuI1c] Length = 440 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 12/180 (6%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLV 71 AE A +A D E R +VQ+ G GT I +A P+L ++ Sbjct: 36 AERLAAGDGPVAFDAERASGYRYSQRAYLVQVRRRGSGTALIDPVA-----LPDL-SVIQ 89 Query: 72 DE--KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 D+ E + H D+ L G+R +F T++A RL + GL ++ +LG Sbjct: 90 DKVGGVEWVLHAASQDLPCL-AELGLRPTTLFDTELAGRLLGY--ERVGLGMMVERVLGF 146 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K ++DWS L + L+YAA DV L LR +L G+ D A ++ Sbjct: 147 GLEKGHSAADWSTRPLPEPWLRYAALDVELLVELRDALAVELAETGKLDFAHQEFAAIVA 206 >gi|307946769|ref|ZP_07662104.1| ribonuclease D [Roseibium sp. TrichSKD4] gi|307770433|gb|EFO29659.1| ribonuclease D [Roseibium sp. TrichSKD4] Length = 330 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 4/136 (2%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + D K+FH R D+ ++++ + P+F +++A+ + + + + ++ G Sbjct: 1 MADRNVTKVFHAARQDVEIVYHLGKLIPAPLFDSQVAAMVC-GFGDSISYDQLVYKVTGA 59 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 I K+ + +DWS L+ +QL+YA +DV HL + L GRS L Sbjct: 60 QIDKSSRFTDWSRRPLTQKQLEYALADVTHLRDVYQFLKANLAEQGRSHWVQDEMEILTS 119 Query: 190 RAEL---DLLGWENVD 202 W+ + Sbjct: 120 ENTYRSEPENAWKRLK 135 >gi|32473842|ref|NP_866836.1| ribonuclease D [Rhodopirellula baltica SH 1] gi|32444378|emb|CAD74377.1| ribonuclease D [Rhodopirellula baltica SH 1] Length = 493 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 8/176 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE---- 76 I DTE + R LC+VQ++ G I G + +L D++ E Sbjct: 112 PVIGFDTEFVSEDCYRPELCLVQVAAGKHLAVIDPYTVG--DTKPFWDILTDDQIEPGSR 169 Query: 77 -KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 I H R +I + G + +F T++A+ L +++L+G + K + Sbjct: 170 VVIAHAAREEIRFAYRYSGRPIAGLFDTQLAAGFVGIEYPA-SLATLVQKLVGQTLPKGE 228 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 ++W L+ +QL YA DV L + + ++ L R + L + Sbjct: 229 TRTNWRHRPLTKDQLTYALHDVTTLAEMHSKLIADVKALDRVSWLDEETDRLQKKV 284 >gi|269126003|ref|YP_003299373.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183] gi|268310961|gb|ACY97335.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183] Length = 437 Score = 167 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 8/174 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R ++QL G GT I IA + L L D Sbjct: 64 AAGHGPVAVDAERASGYRYGQRAYLIQLRRQGAGTALIDPIAC--PDLSGLDAALADA-- 119 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R R +F T++A RL + GL ++ +LG + K Sbjct: 120 EMVLHAANQDLPCL-AEVGLRPRRLFDTELAGRLLGH--PKVGLGSMVENVLGFVLEKGH 176 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + DWS L ++ L+YAA DV L LR +L+R G+ A ++ Sbjct: 177 SAVDWSTRPLPEDWLRYAALDVELLIELRDALHAELERAGKLQWALEEFAAILA 230 >gi|134098409|ref|YP_001104070.1| putative ribonuclease D (partial match) [Saccharopolyspora erythraea NRRL 2338] gi|291003374|ref|ZP_06561347.1| ribonuclease D [Saccharopolyspora erythraea NRRL 2338] gi|133911032|emb|CAM01145.1| putative ribonuclease D (partial match) [Saccharopolyspora erythraea NRRL 2338] Length = 419 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 7/164 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +AVDTE R +VQL G GTV + IA P + + E + H Sbjct: 51 PVAVDTERASGYRYSQRAYLVQLRREGAGTVLVDPIALAGSLEPLATAL---DDTEWVLH 107 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L +R +F T++A RL ++ L ++ +LG + K ++DW Sbjct: 108 AASQDLPCL-AELDLRPARLFDTELAGRLAG--FDRVSLGALVERMLGYRLEKGHSAADW 164 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 S L + L YAA DV L ALR +L+R + + A Sbjct: 165 SRRPLPADWLAYAALDVELLVALREAMHAELERQDKLEWAWEEF 208 >gi|282866537|ref|ZP_06275580.1| 3'-5' exonuclease [Streptomyces sp. ACTE] gi|282558584|gb|EFB64143.1| 3'-5' exonuclease [Streptomyces sp. ACTE] Length = 384 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 8/167 (4%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 +AVD E R +VQL G G+ I + G + +L L E I Sbjct: 19 TGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPV--GCPDLSSLGEAL--TGTEWI 74 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L G+ +F T++A RL + GL ++ LLG + K + Sbjct: 75 LHAATQDLPCL-RDIGMVPTSLFDTELAGRLAG--FPRVGLGAIVENLLGYALEKGHSAV 131 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 DWS L D L+YAA DV L LR +L+R G+ + A + Sbjct: 132 DWSTRPLPDPWLRYAALDVELLVDLRDALEAELERQGKLEWALEEFD 178 >gi|145336746|ref|NP_175846.3| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana] gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana] gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana] Length = 637 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 4/170 (2%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A A + V+ AVD E + C++Q+S + P L Sbjct: 125 EDLAA--ALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRE 182 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K++K+ H DI L FG+ V +F T ASR+ + ++ L+ LK G Sbjct: 183 LFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLK--LERNSLEFLLKHYCG 240 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + +K Q +DW L D +YA D +L + +L + + D Sbjct: 241 VAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKED 290 >gi|297156498|gb|ADI06210.1| ribonuclease D [Streptomyces bingchenggensis BCW-1] Length = 424 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 70/169 (41%), Gaps = 8/169 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G GT I + G + L + D Sbjct: 56 AEGHGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV--GCPDLSGLGDAIADA-- 111 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 112 EWVLHAATQDLPCL-RDIGMLPGRLFDTELAGRLAG--FARVGLGAMVENILGYALEKGH 168 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 + DWS L D L YAA DV L LR E+L R G+ + A Sbjct: 169 SAVDWSTRPLPDPWLHYAALDVELLVDLRDALEEELTRQGKLNWAHQEF 217 >gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana] Length = 639 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 4/170 (2%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A A + V+ AVD E + C++Q+S + P L Sbjct: 125 EDLAA--ALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRE 182 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K++K+ H DI L FG+ V +F T ASR+ + ++ L+ LK G Sbjct: 183 LFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLK--LERNSLEFLLKHYCG 240 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + +K Q +DW L D +YA D +L + +L + + D Sbjct: 241 VAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKED 290 >gi|327537477|gb|EGF24200.1| ribonuclease D [Rhodopirellula baltica WH47] Length = 433 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 8/176 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE---- 76 I DTE + R LC+VQ++ G I G + +L D++ E Sbjct: 52 PVIGFDTEFVSEDCYRPELCLVQVAAGKHLAVIDPYTVG--DTKPFWDILTDDQIEPGSR 109 Query: 77 -KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 I H R +I + G + +F T++A+ L +++L+G + K + Sbjct: 110 VVIAHAAREEIRFAYRYSGRPIAGLFDTQLAAGFVGIEYPA-SLATLVQKLVGQTLPKGE 168 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 ++W L+ +QL YA DV L + + ++ L R + L + Sbjct: 169 TRTNWRHRPLTKDQLTYALHDVTTLAEMHSKLIADVKALDRVSWLDEETDRLQKKV 224 >gi|302541899|ref|ZP_07294241.1| putative ribonuclease D [Streptomyces hygroscopicus ATCC 53653] gi|302459517|gb|EFL22610.1| putative ribonuclease D [Streptomyces himastatinicus ATCC 53653] Length = 425 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 70/169 (41%), Gaps = 8/169 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G GT I + G + L + D Sbjct: 56 AAGHGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV--GCPDLSGLGAAVADA-- 111 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 112 EWVLHAATQDLPCL-RDIGMVPDRLFDTELAGRLAG--FARVGLGAMVENILGYALEKGH 168 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 + DWS L + L YAA DV L LR E+L R G+ + A Sbjct: 169 SAVDWSTRPLPEPWLHYAALDVELLVDLRDALEEELTRQGKLEWAHQEF 217 >gi|115653109|ref|XP_001198503.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus purpuratus] gi|115960717|ref|XP_001189337.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus purpuratus] Length = 819 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 59/160 (36%), Gaps = 3/160 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + IAVD E C++Q+S + ++ + L D K Sbjct: 279 SLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHD-YVVDTLELRSELQMLNDAFTDPKI 337 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L G+ V +F T ASR H L L + K Sbjct: 338 VKVFHGANMDIDWLQRDLGLYVVNMFDTHQASRSLG--FPHHSLASLLSRYCQVEADKQY 395 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q +DW L +E L YA D +L + +L + G Sbjct: 396 QLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRG 435 >gi|158316934|ref|YP_001509442.1| 3'-5' exonuclease [Frankia sp. EAN1pec] gi|158112339|gb|ABW14536.1| 3'-5' exonuclease [Frankia sp. EAN1pec] Length = 499 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 8/177 (4%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 E A +A D E R +VQ+ G GT+ I IA + + + Sbjct: 74 ATERLAAGTGPVAFDAERASGYRYSQRAYLVQIRRAGAGTLLIDPIA--LPDLSGVQDAV 131 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D E + H D+ L G+R + +F T++A RL + GL ++ +LG Sbjct: 132 GDT--EWVLHAASQDLPCL-AELGLRPKTLFDTELAGRLLGY--ERVGLGAMVERVLGFG 186 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + K ++DWS L + L+YAA DV L LR Q +L + A + + Sbjct: 187 LEKGHSAADWSNRPLPEPWLRYAALDVELLVELRDQLESELVAQNKMAFARQEFDAI 243 >gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis] gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis] Length = 552 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 3/156 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 AVD E +C++Q+S D + + + + L + K+F Sbjct: 269 AQEFAVDLEHHSYRSFLGFVCLMQISTRDHDFLVDTL-ELRNDLHLLNESFTNPNILKVF 327 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L FG+ V +F T ASR+ + L LK+ G+ K Q +D Sbjct: 328 HGADMDVGWLQRDFGIYVVNMFDTGQASRVLA--LERFSLAFLLKKFCGVTADKQYQLAD 385 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 W L +E ++YA D +L + + +L R G Sbjct: 386 WRIRPLPEEMIRYAREDTHYLLYIHDRLRNELIRTG 421 >gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana] Length = 642 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 4/170 (2%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A A + V+ AVD E + C++Q+S + P L Sbjct: 125 EDLAA--ALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRE 182 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K++K+ H DI L FG+ V +F T ASR+ + ++ L+ LK G Sbjct: 183 LFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLK--LERNSLEFLLKHYCG 240 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + +K Q +DW L D +YA D +L + +L + + D Sbjct: 241 VAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKED 290 >gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601] gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601] Length = 388 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 4/169 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 D+I+VDTE+ G ++C++Q+S I + +N +L + D+K Sbjct: 23 LSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLK--LQNLESLGNLFEDKKIL 80 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KIFH DI L FG + + + T +SRL Q+ L + I +SK +Q Sbjct: 81 KIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDH--EQYSLTYLVDYYHKIKLSKKEQ 138 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 S+W L QLQYAA D V+L + + E+L + + A S Sbjct: 139 KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELIKRNLYEEAISEFE 187 >gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana] Length = 578 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 3/174 (1%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A R V+ AVD E + C++Q+S + P L Sbjct: 268 DLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLRE 327 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K++K+ H DI L FG+ V +F T ASR+ ++ L+ L+ G Sbjct: 328 IFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCG 385 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + +K Q++DW L +E +YA D +L + +LQR+ + D T Sbjct: 386 VTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD 439 >gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa] gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa] Length = 858 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 3/163 (1%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A R V+ AVD E + C++Q+S + + P L Sbjct: 241 DLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYLRE 300 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D + K+ H D+ L FG+ + +F T ASR+ + ++ L+ L G Sbjct: 301 VFKDPAKRKVMHGADRDVVWLQRDFGIYICNLFDTGQASRVLK--LERNSLEHLLHHFCG 358 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + +K Q++DW L DE ++YA D +L + L Sbjct: 359 VTANKEYQNADWRLRPLPDEMIRYAREDTHYLLHIYDLMRALL 401 >gi|83645396|ref|YP_433831.1| ribonuclease D [Hahella chejuensis KCTC 2396] gi|83633439|gb|ABC29406.1| ribonuclease D [Hahella chejuensis KCTC 2396] Length = 398 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 3/171 (1%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A D +AVDTE + ++QL + + + + + Sbjct: 29 ALLRLEKTDWLAVDTEFIRGTTFYPAPALLQLYDRQCVYLVDMLK--ITDWSGVSRLFES 86 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+ H D+ + + + T++A+ L N+ GL+ +++ LGI + Sbjct: 87 RDILKVVHACSEDLELFNCVGLSQPCGLIDTQVANALLDGELNE-GLQSLVRQNLGIELE 145 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 K SDW+ L+D+Q+QYA DVV L L + E L+ G+ ++A Sbjct: 146 KHATRSDWTQRPLTDKQIQYAQEDVVVLWPLYQKLAEALRLSGKYEIALEE 196 >gi|108799177|ref|YP_639374.1| 3'-5' exonuclease [Mycobacterium sp. MCS] gi|119868292|ref|YP_938244.1| 3'-5' exonuclease [Mycobacterium sp. KMS] gi|126434785|ref|YP_001070476.1| 3'-5' exonuclease [Mycobacterium sp. JLS] gi|108769596|gb|ABG08318.1| 3'-5' exonuclease [Mycobacterium sp. MCS] gi|119694381|gb|ABL91454.1| 3'-5' exonuclease [Mycobacterium sp. KMS] gi|126234585|gb|ABN97985.1| 3'-5' exonuclease [Mycobacterium sp. JLS] Length = 428 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 7/189 (3%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62 + E AE A A+D E +R +VQ+ G GTV I + G+ Sbjct: 41 VTTDEILAAAELLAGGHGPFAIDAERASGFRYSNRAYLVQIRREGAGTVLIDPVNHGEDP 100 Query: 63 APNLVGM--LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + + ++D E + H D+ L G+R ++ T++A RL + L Sbjct: 101 TMVMAPVADVLDTD-EWVLHAADQDLPCL-AELGMRPPKLYDTELAGRLAG--LARVNLA 156 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ELLG+ + K ++DWS L D+ L YAA DV L LR L G++D A Sbjct: 157 TMVSELLGLQLMKGHGAADWSKRPLPDDWLNYAALDVEVLLELRDAVAAVLDDQGKTDWA 216 Query: 181 TSCCNFLMD 189 L Sbjct: 217 IQEFEHLRT 225 >gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni] gi|238658291|emb|CAZ29351.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni] Length = 830 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 3/171 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IAVD E C++Q+S G+ II A + + L + D K K+F Sbjct: 233 CKYIAVDLEHHSYRSFLGITCLIQMSTL-GSDYIIDALALRDHLSILNEVFTDPKIVKVF 291 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L FGV V +F T IA+RL + + L L+ +GI +K Q +D Sbjct: 292 HGSDSDLMWLQRDFGVYVVNLFDTGIAARLLQYG--RFSLSYLLQRFVGIYANKKYQLAD 349 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 W L +E ++YA SD +L + + +LQ +A L R Sbjct: 350 WRIRPLPNELIEYARSDTHYLLHIASRMCRELQDRDLLSVAIERARQLCLR 400 >gi|118463563|ref|YP_882753.1| ribonuclease D [Mycobacterium avium 104] gi|118164850|gb|ABK65747.1| ribonuclease D [Mycobacterium avium 104] Length = 428 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 5/178 (2%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 A R AVD E +R ++Q+ G GTV I ++ G L + Sbjct: 39 AARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRPVA 98 Query: 71 V-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 E I H D+ L G+R ++ T++A RL + L ++ LLG Sbjct: 99 EVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FERVNLATMVERLLGF 155 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++K ++DWS L E L YAA DV L LR + L G++D A ++L Sbjct: 156 GLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGKTDWAAQEFDYL 213 >gi|294815677|ref|ZP_06774320.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064] gi|326444024|ref|ZP_08218758.1| ribonuclease D [Streptomyces clavuligerus ATCC 27064] gi|294328276|gb|EFG09919.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064] Length = 428 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 8/167 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E R +VQL G G+ I +A + L L + E Sbjct: 62 GSGPVAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC--PDLSPLGEAL--DGAEW 117 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ L G+ +F T++A RL + GL ++ +LG + K + Sbjct: 118 ILHAATQDLPCL-RDIGMAPALLFDTELAGRLAG--FPRVGLGAMVESVLGYALEKGHSA 174 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 DWS L + L+YAA DV L LR E+L G+ + A Sbjct: 175 VDWSTRPLPEPWLRYAALDVELLIDLRDALEEELAEQGKLEWARQEF 221 >gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex] Length = 834 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 3/154 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 IAVD E + C++Q+S I + + P L + + K KIFH Sbjct: 254 VIAVDLEAHSYRSFQGLTCLMQISTSSSDYIIDTLELWDQLQP-LNEVFCNPKIVKIFHG 312 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 DI L FG+ V +F T A++L Q L L+ + K Q +DW Sbjct: 313 ADMDIQWLQRDFGIYVVNLFDTYHAAKLLG--FAQLSLSFLLRHYCQVIADKQYQLADWR 370 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L ++ + YA D +L + + + L+ G Sbjct: 371 IRPLPEQMVNYAREDTHYLGYIYEKMKKDLKMKG 404 >gi|296129572|ref|YP_003636822.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109] gi|296021387|gb|ADG74623.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109] Length = 417 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 8/172 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E R +VQL D GT I +A + L LV E Sbjct: 51 GTGPVAVDAERASGYRYGQRTYLVQLRREDAGTALIDPVA--LPDLSTLSAALV--GVEW 106 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+R VF T++A+RL + GL + + LG+ ++K + Sbjct: 107 VLHAASQDLPGLAEQ-GMRPSRVFDTELAARLLGM--ERVGLAAVVADTLGLGLAKEHSA 163 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 DWS L E L+YAA DV L +R E+L G+++ A + Sbjct: 164 VDWSTRPLPTEWLRYAALDVEVLVEVRQVLAERLAVSGKAEWARQEFEAVRT 215 >gi|227496242|ref|ZP_03926539.1| possible ribonuclease D [Actinomyces urogenitalis DSM 15434] gi|226834230|gb|EEH66613.1| possible ribonuclease D [Actinomyces urogenitalis DSM 15434] Length = 431 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 8/180 (4%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 A+C A +AVD E ++QL G GT + + AG + L L Sbjct: 50 AADCLAAGHGPVAVDAERASGFRYGQDAYLIQLRREGAGTFLVDPVTAG--DMSALAAAL 107 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 E I H D+ L G+ R +F T++A+RL + GL ++E LG+ Sbjct: 108 DGP--EWILHAADQDLPCLS-ALGLHPRSLFDTELAARLLG--RARVGLGAVVEETLGLR 162 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++K ++DWS L L YAA DV L LR+ +L+ G+++ A ++ R Sbjct: 163 LAKDHAAADWSTRPLPRTWLVYAALDVELLADLRVALGAELEEAGKAEWARQEFDYERTR 222 >gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group] Length = 877 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 6/177 (3%) Query: 2 TTIRVHEGDIPA----ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 T H D+ + + AVD E + C++Q+S + + Sbjct: 233 DTPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQISTRTEDFIVDTLK 292 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + L + D ++K+ H DI L FG+ V +F T ASR+ +++ Sbjct: 293 LRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRIL--QMDRN 350 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L+ L G+ +K QS+DW L DE ++YA D +L + +L + Sbjct: 351 SLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKE 407 >gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica Group] Length = 902 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 6/177 (3%) Query: 2 TTIRVHEGDIPA----ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 T H D+ + + AVD E + C++Q+S + + Sbjct: 258 DTPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQISTRTEDFIVDTLK 317 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + L + D ++K+ H DI L FG+ V +F T ASR+ +++ Sbjct: 318 LRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRIL--QMDRN 375 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L+ L G+ +K QS+DW L DE ++YA D +L + +L + Sbjct: 376 SLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKE 432 >gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona intestinalis] Length = 647 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 59/159 (37%), Gaps = 3/159 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E + C++QLS + IA + L + + Sbjct: 80 LKEASEIAVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTIAL-RAELNILNQVFANPNII 138 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FG+ V +F T A+R +H L L + K Q Sbjct: 139 KVFHGADSDIIWLQRDFGIYVVNLFDTGQAARALG--LQRHSLDYLLTHYCNVQADKKYQ 196 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +DW L E L YA D +L + L + G Sbjct: 197 LADWRIRPLPKEMLLYAQGDTHYLLYVYDMMRLDLVKTG 235 >gi|152965548|ref|YP_001361332.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216] gi|151360065|gb|ABS03068.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216] Length = 427 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 8/169 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G GT I A + +L +L D Sbjct: 46 AAGTGPVAVDAERASGYRYGQRAFLVQLRREGAGTALIDPDA--LPDLSSLGAVLADA-- 101 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R +F T++ SR+ + GL ++ELLG+ ++K Sbjct: 102 EWVLHAANQDLPCL-AEVGMRPTRLFDTELGSRIAG--LPRVGLGAVVEELLGLRLAKEH 158 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 + DWS L + L YAA DV L +R E+L G+ + A Sbjct: 159 SAVDWSTRPLPEPWLTYAALDVEVLVQVRDALAERLAAQGKLEWALEEF 207 >gi|332670632|ref|YP_004453640.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484] gi|332339670|gb|AEE46253.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484] Length = 424 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 54/190 (28%), Positives = 78/190 (41%), Gaps = 14/190 (7%) Query: 7 HEGDIPAECA------ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG 59 H D P E A +AVD E R +VQL G GT I +A Sbjct: 37 HVVDTPEELARVVAAFGAGTGPVAVDAERASGYRYGQRTYLVQLRREGAGTALIDPVA-- 94 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + L LV E + H D+ L G+R +F T++ +RL + GL Sbjct: 95 LPDLSALSEALV--GVEWVLHAASQDLPGL-TEQGMRPTRIFDTELGARLLGM--ERVGL 149 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + + LG+ ++K + DWS L E L+YAA DV L LR E+L G+++ Sbjct: 150 AAVVADALGLGLAKEHSAVDWSTRPLPQEWLRYAALDVEVLVPLREVLAERLAVAGKAEW 209 Query: 180 ATSCCNFLMD 189 A + Sbjct: 210 AAQEFEAVRT 219 >gi|226306331|ref|YP_002766291.1| ribonuclease D [Rhodococcus erythropolis PR4] gi|226185448|dbj|BAH33552.1| putative ribonuclease D [Rhodococcus erythropolis PR4] Length = 429 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 7/170 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E R ++QL G G+ + I Q P + + + Sbjct: 45 GHGPLAVDAERASGFRYSARAYLIQLRREGAGSFLLDPIPTAQDLQPLAEAI--NP-LQW 101 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+ +F T++A RL + GL ++ L + + K + Sbjct: 102 VLHSADQDLPGL-AELGLTPAELFDTELAGRLAG--FERVGLAAIVERTLRVELRKGHGA 158 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +DWS L D L YAA DV L LR +L+ G+ + A ++ Sbjct: 159 ADWSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGKLEWAKEEFEYI 208 >gi|41408900|ref|NP_961736.1| hypothetical protein MAP2802 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397259|gb|AAS05119.1| hypothetical protein MAP_2802 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 428 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 5/178 (2%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 A R AVD E +R ++Q+ G GTV I ++ G L + Sbjct: 39 AARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRPVA 98 Query: 71 V-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 E I H D+ L G+R ++ T++A RL + L ++ LLG Sbjct: 99 EVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FERVNLATMVERLLGF 155 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++K ++DWS L E L YAA DV L LR + L G++D A ++L Sbjct: 156 GLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGKTDWAAQEFDYL 213 >gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp. lyrata] gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp. lyrata] Length = 681 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 3/170 (1%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A + V+ AVD E + C++Q+S + P+L Sbjct: 216 DLEDLAATLQSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLWDHIGPHLRE 275 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K++K+ H DI L FG+ V +F T ASR+ + + L+ LK G Sbjct: 276 LFKDPKKKKVMHGADHDIIWLQRDFGIYVCNLFDTGQASRVLK--LERKSLEFLLKHYCG 333 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + K Q++DW L D +YA D +L + L + + D Sbjct: 334 VAADKQYQNADWRIRPLPDVMTRYAREDTHYLLYIYDVMRIDLHTMAKED 383 >gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum] Length = 860 Score = 165 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 13/195 (6%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 IAVD E C++Q+S D I +A + L + D K K+FH Sbjct: 279 YIAVDLEHHSYRSFLGITCLIQISTLDTDYIIDALAL-HDHLSILNEVFTDPKIVKVFHG 337 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L FGV V +F T +A+RL + + L L+ + IN +K Q +DW Sbjct: 338 SDSDLMWLQRDFGVYVVNLFDTGVAARLLQHG--RFSLSYLLQRYVNINPNKKYQLADWR 395 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS----DLATS-CCNFLMDRA----- 191 L +E ++YA +D +L + + +LQ + A C Sbjct: 396 IRPLPNELIEYARTDTHYLLHIASRMCRELQDRNLLSVTFERARQLCLKCYTKPVFNRLG 455 Query: 192 ELDLLGWENVDIFSH 206 LDL FSH Sbjct: 456 YLDLYKQTGCSSFSH 470 >gi|269794953|ref|YP_003314408.1| ribonuclease D [Sanguibacter keddieii DSM 10542] gi|269097138|gb|ACZ21574.1| ribonuclease D [Sanguibacter keddieii DSM 10542] Length = 437 Score = 165 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 14/190 (7%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD--E 73 A +AVD E +VQL G GTV I +A +A + D + Sbjct: 57 ASGNGPVAVDAERASGYRYGQSTYLVQLRREGAGTVLIDPVALPDLSA------MSDALD 110 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 E + H D+ L + VF T++A+R+ + GL + E+LG+ ++K Sbjct: 111 GVEWVLHAASQDLPGLAEQH-LVPSAVFDTELAARILGM--ERVGLAAVVAEVLGLGLAK 167 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN--FLMDRA 191 + DWS L D L YAA DV L LR + E+L+ G+++ A L A Sbjct: 168 EHSAVDWSTRPLPDAWLLYAALDVEVLVELRDRMAERLEAAGKTEWARQEFEAVRLTGPA 227 Query: 192 ELDLLGWENV 201 + W V Sbjct: 228 APRVEPWRRV 237 >gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis] Length = 669 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E + C++QLS + +A + N L + + K Sbjct: 133 LKQESEIAVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTLAL-RANLNILNQVFTNPKIV 191 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FGV V +F T A+R+ ++ + LK + K Q Sbjct: 192 KVFHGADQDIKWLQRDFGVYVVNLFDTGQAARVLELGLSR---EYLLKHYCKVESDKKYQ 248 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFT-EKLQRLG 175 +DW LS + L+YA D +L + + L++ G Sbjct: 249 KADWRERPLSKDMLKYAQEDTHYLLYIYDMMKLDLLEKAG 288 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 +F T A+R + L+ LK + K Q +DW LS + L+YA D + Sbjct: 430 LFDTGQAARELKLG---CSLEYLLKHYCKVESDKKFQKADWRERPLSKDMLKYAQKDTHY 486 Query: 160 LHALRLQFT-EKLQRLG 175 L + + L++ G Sbjct: 487 LLYIYDMMKLDLLEKAG 503 >gi|239983036|ref|ZP_04705560.1| ribonuclease D [Streptomyces albus J1074] gi|291454868|ref|ZP_06594258.1| ribonuclease D [Streptomyces albus J1074] gi|291357817|gb|EFE84719.1| ribonuclease D [Streptomyces albus J1074] Length = 348 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 78/177 (44%), Gaps = 11/177 (6%) Query: 13 AECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 AE ARY +AVD E R +VQL G GT I +A + L Sbjct: 56 AETVARYAAGSGPLAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC--PDLSGLGE 113 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++ D E + H D+ L G+ + +F T++A RL + GL ++ +LG Sbjct: 114 VVEDA--EWLLHAATQDLPCL-RDIGMVPQRLFDTELAGRLAG--FARVGLGAMVENVLG 168 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 ++ K + DWS L + L+YAA DV L LR E+L G+ D A + Sbjct: 169 YSLEKGHSAVDWSTRPLPEPWLRYAALDVELLADLRDALEEELAGQGKLDWAHQEFD 225 >gi|325000861|ref|ZP_08121973.1| 3'-5' exonuclease [Pseudonocardia sp. P1] Length = 230 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 7/172 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E R +VQL G G+ + I + P L L E Sbjct: 30 GTGPVAVDAERASGFRYSQRAYLVQLRRAGAGSALVDPIPLRGELGP-LAAALGGP--EW 86 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L +R +F T++A RL + GL ++ LLG+++ K + Sbjct: 87 VLHAASQDLPCLG-ELDLRPASLFDTELAGRLAG--LPRVGLGPMVENLLGLSLEKGHGA 143 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +DWS L ++ L YAA DV L LR T L G+ + A + Sbjct: 144 ADWSRRPLPEDWLVYAALDVEVLIELRDVLTGLLDEQGKLEWARQEFEAVRT 195 >gi|72162300|ref|YP_289957.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX] gi|71916032|gb|AAZ55934.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX] Length = 420 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 10/191 (5%) Query: 2 TTIRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58 + + ++ A A +AVD E R +VQL G GT I +A Sbjct: 34 PPVVADDEELARVAAKFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC 93 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + L + D E + H D+ L +R R +F T++A RL + G Sbjct: 94 --PDLSVLRDAVGDA--EMVLHAAHQDLPCL-TEVHLRPRRLFDTELAGRLLGYQ--RVG 146 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L ++ +LG+ ++K + DWS L ++ L+YAA DV L LR +L G+ + Sbjct: 147 LGAMVERVLGVRLAKEHAAVDWSTRPLPEDWLRYAALDVEVLIELRDALEAELAETGKLE 206 Query: 179 LATSCCNFLMD 189 A ++ Sbjct: 207 WARQEFAAVLA 217 >gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda melanoleuca] Length = 885 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + L L D K+FH Sbjct: 333 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSEMYILNESLTDPSIVKVFHGA 391 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK G+ +K Q +DW Sbjct: 392 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCGVESNKQYQLADWRI 449 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L +E L YA D +L + + +L G Sbjct: 450 RPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQ 488 >gi|229491276|ref|ZP_04385102.1| ribonuclease D [Rhodococcus erythropolis SK121] gi|229321815|gb|EEN87610.1| ribonuclease D [Rhodococcus erythropolis SK121] Length = 431 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 7/170 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E R ++QL G G+ + I Q P L + ++ + Sbjct: 47 GHGPLAVDAERASGFRYSARAYLIQLRREGAGSFLLDPIPTAQDLQP-LAEV-INP-LQW 103 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+ +F T++A RL + GL ++ L + + K + Sbjct: 104 VLHSADQDLPGL-AELGLTPAELFDTELAGRLAG--FERVGLAAIVERTLRVELRKGHGA 160 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +DWS L D L YAA DV L LR +L+ G+ + A ++ Sbjct: 161 ADWSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGKLEWAKEEFEYI 210 >gi|115948726|ref|XP_001193541.1| PREDICTED: similar to exosome component 10, partial [Strongylocentrotus purpuratus] Length = 776 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 3/160 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + IAVD E C++Q+S + ++ + L D K Sbjct: 133 SLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHD-YVVDTLELRSELQMLNDAFTDPKI 191 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH D L G+ V +F T ASR H L L + K Sbjct: 192 VKVFHGANMDFDWLQRDLGLYVVNMFDTHQASRSLG--FPHHSLASLLSRYCQVEADKQY 249 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q +DW L +E L YA D +L + +L + G Sbjct: 250 QLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRG 289 >gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 388 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 4/169 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 D+I++DTE+ G ++C++Q+S I + + L + D+K Sbjct: 23 LSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQNLDG--LGNLFEDKKIL 80 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KIFH DI L FG + + T +SRL Q+ L + I +SK +Q Sbjct: 81 KIFHSAIDDIKALKKDFGFKFHNIADTGFSSRLLDH--EQYSLTYLVDYYHKIKLSKKEQ 138 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 S+W L QLQYAA D V+L + + E+L + + A S Sbjct: 139 KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNLYEEAFSEFE 187 >gi|111023812|ref|YP_706784.1| ribonuclease III [Rhodococcus jostii RHA1] gi|110823342|gb|ABG98626.1| probable ribonuclease III [Rhodococcus jostii RHA1] Length = 429 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 7/173 (4%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 + +AVD E R +VQL G GTV + I AP L + ++ Sbjct: 48 LSEGTGPLAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAP-LAEV-INP- 104 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 E I H D+ L G+ +F T++A RL + GL ++ LG+ + K Sbjct: 105 LEWILHSADQDLPGL-AEIGLAPATLFDTELAGRLAG--FERVGLAAIVERTLGLELRKG 161 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++DWS L D L YAA DV L LR +L G+S+ A + Sbjct: 162 HGAADWSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAAQEFEHI 214 >gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda melanoleuca] Length = 887 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSEMYILNESLTDPSIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK G+ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCGVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQ 465 >gi|288917119|ref|ZP_06411489.1| 3'-5' exonuclease [Frankia sp. EUN1f] gi|288351488|gb|EFC85695.1| 3'-5' exonuclease [Frankia sp. EUN1f] Length = 525 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 8/177 (4%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70 E A IA D E R +VQ+ G GT+ I +A + +L ++ Sbjct: 70 ATERLAAGTGPIAFDAERASGYRYSQRAYLVQIRRQGAGTILIDPVA--LPDLTSLQEVV 127 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 E + H D+ L G+ +F T++A RL + GL ++ +LG Sbjct: 128 G--PTEWVLHAASQDLPCL-AELGLHPTSLFDTELAGRLLGY--ERVGLGAMVERVLGFA 182 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + K ++DWS L + L+YAA DV L LR + +L + D A + Sbjct: 183 LEKGHSAADWSTRPLPEPWLRYAALDVELLVELRDRLEAELVERDKIDFARQEFAAI 239 >gi|54025710|ref|YP_119952.1| putative RNase D [Nocardia farcinica IFM 10152] gi|54017218|dbj|BAD58588.1| putative RNase D [Nocardia farcinica IFM 10152] Length = 424 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 7/172 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +AVD E R ++QL G GT + I P + E Sbjct: 47 GTGPLAVDAERASGFRYSARAYLIQLRRAGAGTFLVDPIPVADALGPLAEAI---NDLEW 103 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+R +F T++ RL + GL ++ LLG + K + Sbjct: 104 VLHSADQDLPGL-AELGLRPARLFDTELGGRLAG--FERVGLAAMVERLLGRTLRKGHGA 160 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +DWS L E L YAA DV L LR +LQR G+SD A + Sbjct: 161 ADWSTRPLPAEWLNYAALDVELLLELRDAVAAELQRQGKSDWAAQEFEHVRT 212 >gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis] gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis] Length = 857 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 3/163 (1%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A R V+ AVD E + C++Q+S I + P L Sbjct: 237 DLKELAAKLRAVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIIDTLKLRIHVGPYLRE 296 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D + K+ H DI L FG+ V +F T ASR+ + ++ L+ L+ G Sbjct: 297 VFKDPTKRKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLK--LERNSLEHLLRHFCG 354 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 I +K Q++DW L+DE L+Y D +L + L Sbjct: 355 ITANKEYQNADWRLRPLTDEMLRYGREDTHYLLYIYDLMRIML 397 >gi|284031654|ref|YP_003381585.1| 3'-5' exonuclease [Kribbella flavida DSM 17836] gi|283810947|gb|ADB32786.1| 3'-5' exonuclease [Kribbella flavida DSM 17836] Length = 422 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 8/177 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72 E +AVD E R +VQL G G+ + I G + L ++D Sbjct: 45 EAFGHGTGPVAVDAERASGYRYSHRAYLVQLRREGAGSALVDPIPFG--DLSVLGDAIID 102 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E I H D+A L G+ R VF T++A RL + GL + E+LG + Sbjct: 103 A--EWIIHAANQDLACL-AEVGMVPRQVFDTELAGRLLGY--PKVGLASLVSEVLGYRMR 157 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 K ++DWS L L YAA DV L LR ++L+R G+ + A ++ Sbjct: 158 KEHSAADWSTRPLPGPWLVYAALDVEMLIELRDAIEQELRREGKWEWAQQEFAAILS 214 >gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 [Equus caballus] Length = 886 Score = 164 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 60/159 (37%), Gaps = 3/159 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRREDF-IVDTLELRSDMYILNESFTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK + +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKRYCSVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNDQPVQ 465 >gi|73950874|ref|XP_535408.2| PREDICTED: similar to exosome component 10 isoform 1 [Canis familiaris] Length = 1012 Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 436 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPTIVKVFHGA 494 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK + +K Q +DW Sbjct: 495 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCSVESNKQYQLADWRI 552 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L +E L YA D +L + + +L G Sbjct: 553 RPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQ 591 >gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 406 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 5/178 (2%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 D+ A R +++DTE+ G ++C++Q++ I + N L + Sbjct: 17 DL-ALINLRQSKIMSIDTESSGYYTYYPKVCLIQINSNGKNYLIDPLK--ITNLSALGPL 73 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 D KIFH + DI L FG + T I+SRL + ++ + Sbjct: 74 FEDPNILKIFHSAQDDIKALKRDFGFKFVNTADTMISSRLLSLEQSSLSF--VVEHYHKV 131 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 +SK +Q S+W L +QL+YAA D +L ++ L+ E L+R D A S +F+ Sbjct: 132 TLSKVEQKSNWEIRPLQKQQLKYAALDTAYLESIWLKMEEDLKRRSLYDEAKSEFDFI 189 >gi|182412681|ref|YP_001817747.1| 3'-5' exonuclease [Opitutus terrae PB90-1] gi|177839895|gb|ACB74147.1| 3'-5' exonuclease [Opitutus terrae PB90-1] Length = 391 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 6/174 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 P A VD +A+DTE + R R+C++Q G + +A L L Sbjct: 36 PLLAALDRVDEVALDTEADNMFHYRTRVCLLQFLVGREIFLVDVLAP--LPFEGLWARLA 93 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 ++ I H FD+ +L R + +F T +A++L + GL L++ G+ + Sbjct: 94 EKNL--IMHGSDFDLRLLHDFCRFRPKSIFDTMLAAQLIN--RPRIGLASLLEDHFGVKL 149 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 SK Q ++WS L+ + L YAA DV HL ALR T +L +LGR + C Sbjct: 150 SKESQKANWSKRPLTKKMLDYAALDVFHLPALRDILTRELTKLGRIEWLRQQCR 203 >gi|293347807|ref|XP_002726702.1| PREDICTED: rCG30986-like isoform 1 [Rattus norvegicus] gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus] Length = 885 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLNYARDDTHYLLYIYDRMRLELWERGNDQPVQ 465 >gi|293347809|ref|XP_002726703.1| PREDICTED: rCG30986-like isoform 2 [Rattus norvegicus] Length = 860 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLNYARDDTHYLLYIYDRMRLELWERGNDQPVQ 465 >gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta] Length = 884 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLELWERG 459 >gi|169630071|ref|YP_001703720.1| hypothetical protein MAB_2988 [Mycobacterium abscessus ATCC 19977] gi|169242038|emb|CAM63066.1| Conserved hypothetical protein (putative exonuclease) [Mycobacterium abscessus] Length = 400 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 7/186 (3%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQK 61 T E A+ AVD E +R ++Q+ G GTV + Sbjct: 24 TASTDEIRAAAQRLISGTGPFAVDAERASGFRYSNRAYLIQIRRRGAGTVLLDPTNVPGS 83 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 P + + D E I H D+ L ++ ++ T++A RL + L Sbjct: 84 LGPIVDALGAD---EWILHAADQDLPCL-AELAMKPPSLYDTELAGRLAG--FEKVNLAS 137 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + LLG+ ++K ++DWS L D+ L YAA DV L LR + E L G+++ A Sbjct: 138 MVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVELRDKIAEVLAEQGKTEWAR 197 Query: 182 SCCNFL 187 L Sbjct: 198 QEFEHL 203 >gi|320007817|gb|ADW02667.1| 3'-5' exonuclease [Streptomyces flavogriseus ATCC 33331] Length = 424 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 8/169 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +AVD E R +VQL G G+ I + G + L L Sbjct: 56 AAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPV--GCPDLSALGEAL--TGS 111 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+ +F T++A RL + GL ++ +LG + K Sbjct: 112 EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAG--FPRVGLGAIVENVLGYALEKGH 168 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 + DWS L D L+YAA DV L LR E+L R G+ A Sbjct: 169 SAVDWSTRPLPDPWLRYAALDVELLVDLRNALEEELDRQGKLGWALEEF 217 >gi|332250403|ref|XP_003274341.1| PREDICTED: exosome component 10 [Nomascus leucogenys] Length = 912 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLELWERG 483 >gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 592 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 2/162 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + V+ AVD E + C++Q+S I + L + D + Sbjct: 49 LKDVNEFAVDLEHNQYRSFQGLTCLMQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKR 108 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L F V V +F T ASR+ ++ L+ L G+ +K Q Sbjct: 109 KVMHGADRDIMWLQRDFRVYVCNLFDTGQASRVL--QMERNSLEHLLHHFCGVTANKIYQ 166 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 ++DW + LSDE ++YA D +L + +LQR S+ Sbjct: 167 NADWRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQRESTSE 208 >gi|313233556|emb|CBY09728.1| unnamed protein product [Oikopleura dioica] Length = 790 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R +AVD E + C+VQ+S + +A + L + + K Sbjct: 272 LREESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMY-KLNEVFANPKIV 330 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KIFH R D+ L FGV V +F T A++ + L L+ I + K Q Sbjct: 331 KIFHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLD--LAKKSLDYLLQHYCKIRLDKRFQ 388 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW + L+YA D +L + + L++L Sbjct: 389 LADWRMRPIPPNMLRYARQDTHYLLYVYDRLRADLEKL 426 >gi|111221533|ref|YP_712327.1| putative ribonuclease D [Frankia alni ACN14a] gi|111149065|emb|CAJ60747.1| Putative ribonuclease D (partial match) [Frankia alni ACN14a] Length = 545 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 8/172 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +A D E R +VQ+ G G++ I + G + + + D E Sbjct: 61 GTGPVAFDAERASGYRYSQRAYLVQIRRRGAGSLLIDPVPLG--DLTVIQEAVGDA--EW 116 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H D+ L G+R +F T++A RL + GL ++ +LG + K + Sbjct: 117 VLHAASQDLPCL-AELGLRPALLFDTELAGRLLGY--ERVGLGMMVERVLGYGLEKGHSA 173 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +DWS L + L+YAA DV L LR +L + + A ++ Sbjct: 174 ADWSTRPLPEPWLRYAALDVELLVELRDALEAELIEQDKLEFARQEFAAIVA 225 >gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta] Length = 884 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLELWERG 483 >gi|226366248|ref|YP_002784031.1| ribonuclease [Rhodococcus opacus B4] gi|226244738|dbj|BAH55086.1| putative ribonuclease [Rhodococcus opacus B4] Length = 428 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 7/173 (4%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 + +AVD E R +VQL G GTV + I AP L + ++ Sbjct: 48 LSEGTGPLAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAP-LAEV-INP- 104 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 E I H D+ L G+ +F T++A RL + GL ++ LG + K Sbjct: 105 LEWILHSADQDLPGL-AEIGLAPATLFDTELAGRLAG--FERVGLAAIVERTLGFELRKG 161 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++DWS L D L YAA DV L LR +L G+SD A + Sbjct: 162 HGAADWSKRPLPDTWLNYAALDVEVLVELRNAMAAELGEQGKSDWAAQEFEHI 214 >gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca] Length = 834 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSEMYILNESLTDPSIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK G+ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCGVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQ 465 >gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus] Length = 864 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 312 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 370 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 371 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 428 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 429 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 461 >gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus] Length = 887 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459 >gi|315080608|gb|EFT52584.1| 3'-5' exonuclease [Propionibacterium acnes HL078PA1] Length = 412 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G GT + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++ASRL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELASRLLN--LPRVSLGPMVERYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203 >gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus] gi|123226356|emb|CAM23944.1| exosome component 10 [Mus musculus] gi|123248912|emb|CAM21194.1| exosome component 10 [Mus musculus] Length = 862 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459 >gi|313801939|gb|EFS43173.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA2] Length = 412 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G GT + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDMPCLAMD-GLRPDALFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203 >gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus] gi|123226357|emb|CAM23945.1| exosome component 10 [Mus musculus] gi|123248913|emb|CAM21195.1| exosome component 10 [Mus musculus] Length = 887 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459 >gi|289706235|ref|ZP_06502598.1| putative ribonuclease D [Micrococcus luteus SK58] gi|289557074|gb|EFD50402.1| putative ribonuclease D [Micrococcus luteus SK58] Length = 416 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 6/170 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +AVD E + R +VQL + ++ A AP L L E I Sbjct: 45 TGPVAVDAERASGIRYGQRAMLVQLKREGAGIWLVDPEALDGLAP-LQEALA--GVEWIL 101 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+R +F T++A+R+ + GL L+ELLG+ ++K ++D Sbjct: 102 HAASQDLPCLAEQ-GLRPDRLFDTELAARVAG--LPRVGLAAVLEELLGVTLAKEHSAAD 158 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 WS L + L YAA DV L LR +L+ G+ A + Sbjct: 159 WSVRPLPEAMLAYAALDVELLVPLREALIARLEADGKLAWAEQEFEHVRT 208 >gi|8928261|sp|P56960|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma autoantigen 2 homolog gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated autoantigen homolog [Mus musculus] gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus] gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus] Length = 887 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459 >gi|254776017|ref|ZP_05217533.1| ribonuclease D [Mycobacterium avium subsp. avium ATCC 25291] Length = 416 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 5/178 (2%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 A R AVD E +R ++Q+ G GTV I ++ G L + Sbjct: 27 AARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRPVA 86 Query: 71 V-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 E I H D+ L G+R ++ T++A RL + L ++ LLG Sbjct: 87 EVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FERVNLATMVERLLGF 143 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 ++K ++DWS L E L YAA DV L LR + L G++D A ++L Sbjct: 144 GLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAGQGKTDWAAQEFDYL 201 >gi|187466046|emb|CAQ52093.1| exosome component 10 [Mus musculus] gi|187466070|emb|CAQ51624.1| exosome component 10 [Mus musculus] Length = 861 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 309 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 367 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 368 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 425 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 426 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 458 >gi|187466045|emb|CAQ52092.1| exosome component 10 [Mus musculus] gi|187466069|emb|CAQ51623.1| exosome component 10 [Mus musculus] Length = 886 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 309 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 367 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 368 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 425 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 426 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 458 >gi|87307951|ref|ZP_01090094.1| ribonuclease D [Blastopirellula marina DSM 3645] gi|87289565|gb|EAQ81456.1| ribonuclease D [Blastopirellula marina DSM 3645] Length = 392 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 4/178 (2%) Query: 8 EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + C R I DTE + LC+VQ++ G+ + + Sbjct: 9 QSQLTELCDRLRSESHIYFDTEFVSEDVYLPDLCLVQIAAGEILAIVDP--KRIDDMNVF 66 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 ++ + H GR + + G +F T+IA L + + L Sbjct: 67 WELIAGGDHVSVVHSGREEFLFCYRATGKAPANLFDTQIAGGLIGMEYPA-SFGNLILRL 125 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 L + K + +DW LS Q++YA +DV +L + ++L +L R+ Sbjct: 126 LDEKLPKGETRTDWRVRPLSSRQIEYALNDVAYLGPAAQELEKELTKLDRTSWLQEEM 183 >gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa] gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa] Length = 855 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 3/163 (1%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A R V+ AVD E + C++Q+S + + P L Sbjct: 240 DLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYLRE 299 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D + K+ H DI L FG+ + +F T ASR+ + ++ L+ L G Sbjct: 300 VFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDTGQASRVLK--LERNSLEYLLHHFCG 357 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K Q+++W L DE ++YA D +L + L Sbjct: 358 VTAKKEYQNAEWRLRPLPDEMIRYAREDTHYLLHIYDLMRALL 400 >gi|320167779|gb|EFW44678.1| exosome component 10 protein [Capsaspora owczarzaki ATCC 30864] Length = 945 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 6/158 (3%) Query: 17 ARYVDAI---AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 AR + ++ A+D E + +C++Q+S V I +A + + +L + + Sbjct: 306 ARRLSSVSEFAIDLEHHSYRSLQGFVCLMQVSTRTEDVVIDTLAV-RSSMHHLREVFANP 364 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+FH D+ L + FG+ +F T A+R+ + L L+ + K Sbjct: 365 NILKVFHGADMDVVWLQHDFGIYTINMFDTGQAARVLELG--SYSLAHLLRYFCNVTADK 422 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 Q +DW + E LQYA D +L + + +L Sbjct: 423 KYQLADWRIRPIPAEMLQYAREDTHYLLYIYDRLRNEL 460 >gi|254443317|ref|ZP_05056793.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium DG1235] gi|198257625|gb|EDY81933.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium DG1235] Length = 370 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 11/194 (5%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A + IA+D+E L +LC++QL DGT+ ++ + A + Sbjct: 16 EDLCDHLAKQA--EIALDSEADNLHHFETKLCLLQLRF-DGTIYLLDVTA-DLDLDRFWE 71 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L I H FD+ + G + +F + +AS+L + GL L+E G Sbjct: 72 ILS--GLHLIMHGSDFDLRLFEEFCGFEAKSLFDSMLASQLLG--IKRIGLAALLEENFG 127 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 + I K Q SDWS L+ + L+YAA+DV++LH LR + ++ LGR + C+ + Sbjct: 128 VKIPKDSQKSDWSQRPLTPKMLKYAATDVLYLHELRDKLMARIDELGRGEWLKQRCDNQI 187 Query: 189 DRAELDLLGWENVD 202 A+ G+ D Sbjct: 188 RIAK---SGFPRND 198 >gi|256825389|ref|YP_003149349.1| ribonuclease D [Kytococcus sedentarius DSM 20547] gi|256688782|gb|ACV06584.1| ribonuclease D [Kytococcus sedentarius DSM 20547] Length = 431 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 81/208 (38%), Gaps = 21/208 (10%) Query: 1 MTTIRVHEG-DIPAECA------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSP- 46 M T H D+P A A +A+D E + +VQL Sbjct: 1 MPTPLTHPAEDLPPVVADDAGLAEAAARVAAGTGPVAIDAERASGHRYGNDAYLVQLRRQ 60 Query: 47 GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 G GT+ + + G + L L E + H D+ L G+R R +F T++ Sbjct: 61 GAGTLLVDPM--GITDMSPLAEALDGP--EWVLHAATQDLPCL-ADLGLRPRSLFDTELG 115 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 RL + GL ++ L + ++K + DWS L + L YAA DV L +R Sbjct: 116 GRLVG--LPRVGLAAVVEHYLDLTLAKEHSAVDWSTRPLPTDWLVYAALDVEVLVEVRDA 173 Query: 167 FTEKLQRLGRSDLATSCCNFLMDRAELD 194 L+RLGR + A + L D Sbjct: 174 MEADLERLGRDEWARQEFDALTSFTAKD 201 >gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis] Length = 827 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 3/154 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A AVD E C++Q+S D + + L VD K+ H Sbjct: 274 AFAVDLEHNSYRSYYGLTCLLQISTRDTDYIVDPFPIWHEMY-ILNEPFVDPNIVKVMHG 332 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 DI L FG+ V +F T A + Q LK +KEL+G+N+ K+ Q++DW Sbjct: 333 SSQDIQWLQRDFGIYVVNLFDTYHAMEVLEM--PQRSLKFLVKELVGVNLDKSYQTADWR 390 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L + L YA SD +L +L G Sbjct: 391 IRPLGSKMLAYARSDSHYLLYCWDVLRNQLLNRG 424 >gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus] Length = 910 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 3/156 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 A+D E C++Q+S II + + L D K+ Sbjct: 325 CKEFALDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMSILNETFTDPAIVKVL 383 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L FG+ + +F T A+RL +H L LK ++ K Q +D Sbjct: 384 HGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLG--KHSLDHLLKLYCSVDADKQYQLAD 441 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 W L +E +QYA D +L + + E L G Sbjct: 442 WRIRPLPEEMIQYARDDTHYLLYIYDKMREALWERG 477 >gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae] gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae] Length = 832 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 3/179 (1%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 +T + E + AVD E + C++Q+S D + +A + Sbjct: 273 LTLVTTLEELMDMNDKLTMCSEFAVDLEHHSYRSFQGFTCLMQVSTRDHDYIVDTLAL-R 331 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + L D K K+FH DI L FGV V +F T AS + +H L Sbjct: 332 ADLHVLNDTFTDPKVVKVFHGADMDIQWLQRDFGVYVVNMFDTGQASHVLG--LPRHSLA 389 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 LK + K Q +DW L E QYA D +L + +L G ++ Sbjct: 390 YLLKTYCDVEPDKKYQLADWRIRPLPSEMTQYAREDTHYLLHIYDCMRSELLDRGNNEA 448 >gi|313827523|gb|EFS65237.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA2] gi|315108646|gb|EFT80622.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA2] Length = 412 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G GT + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDLPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203 >gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus] Length = 916 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 313 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 371 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 372 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 429 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 430 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 462 >gi|297561776|ref|YP_003680750.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846224|gb|ADH68244.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 421 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 8/176 (4%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 + +AVD E R +VQL G G+ I IA + L + D Sbjct: 49 ALSAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPIAC--PDLSALNDAVGDA 106 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + + H D+ L +R R +F T++A RL + GL ++ LL + ++K Sbjct: 107 EV--VLHAAHQDLPCLS-EINLRPRSLFDTELAGRLLGYQ--RVGLGFMVERLLHLRLAK 161 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + DWS L ++ L+YAA DV L LR +L+ G+ + A ++ Sbjct: 162 EHSAVDWSQRPLPEDWLRYAALDVEILIDLRDSLEVELEETGKLEWAREEFAAVLS 217 >gi|311898875|dbj|BAJ31283.1| putative ribonuclease D [Kitasatospora setae KM-6054] Length = 411 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 10/187 (5%) Query: 1 MTTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIA 57 + + + + A A +AVD E R ++QL G GT I IA Sbjct: 24 LPPVVSDDAALAAVVEAFRGGTGPVAVDAERASGYRYGQRAYLIQLRRQGAGTALIDPIA 83 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + L L D E + H D+ LF G+ +F T++A RL + Sbjct: 84 C--PDLTGLNAALADT--EWVVHAATQDLPCLF-EVGMHPGVLFDTELAGRLAG--FPRV 136 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 GL + +LG++++K + DWS L + L+YAA DV L LR +L R G+ Sbjct: 137 GLGPMTENVLGLSLAKEHSAVDWSTRPLPEPWLRYAALDVEVLVDLRDALEAELDRQGKL 196 Query: 178 DLATSCC 184 D A Sbjct: 197 DWAHQEF 203 >gi|119945380|ref|YP_943060.1| ribonuclease D [Psychromonas ingrahamii 37] gi|119863984|gb|ABM03461.1| ribonuclease D [Psychromonas ingrahamii 37] Length = 369 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 5/186 (2%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I + A I++DTE + L ++Q+S I IA G + Sbjct: 5 IITTTAQLHDFIATLDGSPISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAVG--DL 62 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 + + ++ I H D+ ++ G +F T+IA G + Sbjct: 63 SSFWQAIDNKNI--ILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMGA-SLGYAKMV 119 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + L + + K + +DW A LS++Q+ YA DV++L + ++L+ Sbjct: 120 ETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCLEKLQQQLENKKMFPFFEQE 179 Query: 184 CNFLMD 189 C ++ Sbjct: 180 CQSVLA 185 >gi|88856896|ref|ZP_01131548.1| ribonuclease [marine actinobacterium PHSC20C1] gi|88813864|gb|EAR23734.1| ribonuclease [marine actinobacterium PHSC20C1] Length = 418 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 8/178 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A I +D E R ++Q+ G GT A G + L ++ + Sbjct: 38 EAIAAGNGPIGIDAERASGYRYSQRAYLIQIFRRGAGTFLFDPPAIG--DFSELNDVIAN 95 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E E I H D+ L G+ +F T++ +R+ + GL ++ LGI+++ Sbjct: 96 E--EWILHAATQDLTCL-REVGLYPTRLFDTELGARIAG--LPRVGLGTVVEHFLGIHLA 150 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K S+DWS L L YAA DV L LR E L + D+A + ++ R Sbjct: 151 KEHSSADWSTRPLPQAWLVYAALDVELLVDLREALGELLDSADKHDIAQQEFDSVLAR 208 >gi|117928598|ref|YP_873149.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B] gi|117649061|gb|ABK53163.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B] Length = 416 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 72/170 (42%), Gaps = 8/170 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +AVD E R +VQL PG GT I + N + L E I Sbjct: 42 GPVAVDAERASAYRYGHRAYLVQLRRPGAGTFLIDPLPFA--NLRPVHEALS--TAEWIV 97 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+R +F T++A+RL + GL ++ELLG ++K D Sbjct: 98 HAAAQDLPCL-AELGLRPARLFDTELAARLAGY--PRVGLAAMVEELLGFRLNKDHARVD 154 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 WS L + L+YAA DV L LR +LQR G+ A + Sbjct: 155 WSRRPLPESWLRYAALDVEVLVELREILHTELQRQGKLRWAVEEFEHVRT 204 >gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1] gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1] Length = 422 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 11/186 (5%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +D E +R ++QL + +I P + + E E I Sbjct: 50 GTGPVGIDAERASGYRYSNRAYLIQLRREGSGIWLIDPIELTTMQPLVEAL---EGTEWI 106 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L G+ +F T++A RL + GL ++ +LG + K ++ Sbjct: 107 LHAATQDLPCLS-DLGLHPAALFDTELAGRLLGY--PRVGLGTLVETVLGFTMLKEHSAA 163 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---MDRAELDL 195 DWS L D L+YAA DV L LR +L G+ A ++L D Sbjct: 164 DWSTRPLPDAWLEYAALDVEVLVELREALAAELVAQGKDAWARQEFDWLRGFEAPVRTD- 222 Query: 196 LGWENV 201 W Sbjct: 223 -AWRRT 227 >gi|328754581|gb|EGF68197.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA2] Length = 412 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G GT + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203 >gi|289425030|ref|ZP_06426807.1| 3'-5' exonuclease [Propionibacterium acnes SK187] gi|289154008|gb|EFD02696.1| 3'-5' exonuclease [Propionibacterium acnes SK187] gi|313792108|gb|EFS40209.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA1] gi|313838766|gb|EFS76480.1| 3'-5' exonuclease [Propionibacterium acnes HL086PA1] gi|314962767|gb|EFT06867.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA1] gi|315077982|gb|EFT50033.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA2] gi|327453174|gb|EGE99828.1| 3'-5' exonuclease [Propionibacterium acnes HL092PA1] Length = 412 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G GT + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203 >gi|50842545|ref|YP_055772.1| ribonuclease D [Propionibacterium acnes KPA171202] gi|295130624|ref|YP_003581287.1| 3'-5' exonuclease [Propionibacterium acnes SK137] gi|50840147|gb|AAT82814.1| ribonuclease D [Propionibacterium acnes KPA171202] gi|291375251|gb|ADD99105.1| 3'-5' exonuclease [Propionibacterium acnes SK137] gi|313764422|gb|EFS35786.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA1] gi|313772196|gb|EFS38162.1| 3'-5' exonuclease [Propionibacterium acnes HL074PA1] gi|313807552|gb|EFS46039.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA2] gi|313810061|gb|EFS47782.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA1] gi|313815960|gb|EFS53674.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA1] gi|313818593|gb|EFS56307.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA2] gi|313820361|gb|EFS58075.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA1] gi|313822834|gb|EFS60548.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA2] gi|313825235|gb|EFS62949.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA1] gi|313830390|gb|EFS68104.1| 3'-5' exonuclease [Propionibacterium acnes HL007PA1] gi|313833761|gb|EFS71475.1| 3'-5' exonuclease [Propionibacterium acnes HL056PA1] gi|314915414|gb|EFS79245.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA4] gi|314920115|gb|EFS83946.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA3] gi|314925249|gb|EFS89080.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA3] gi|314931637|gb|EFS95468.1| 3'-5' exonuclease [Propionibacterium acnes HL067PA1] gi|314955692|gb|EFT00094.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA1] gi|314958090|gb|EFT02193.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA1] gi|314959968|gb|EFT04070.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA2] gi|314967866|gb|EFT11965.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA1] gi|314973393|gb|EFT17489.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA1] gi|314976071|gb|EFT20166.1| 3'-5' exonuclease [Propionibacterium acnes HL045PA1] gi|314978539|gb|EFT22633.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA2] gi|314983908|gb|EFT28000.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA1] gi|314989898|gb|EFT33989.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA3] gi|315084278|gb|EFT56254.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA2] gi|315085621|gb|EFT57597.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA3] gi|315088327|gb|EFT60303.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA1] gi|315095938|gb|EFT67914.1| 3'-5' exonuclease [Propionibacterium acnes HL038PA1] gi|315098569|gb|EFT70545.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA2] gi|315101430|gb|EFT73406.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA1] gi|315105619|gb|EFT77595.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA1] gi|327326219|gb|EGE68009.1| putative ribonuclease D [Propionibacterium acnes HL096PA2] gi|327330288|gb|EGE72037.1| putative ribonuclease D [Propionibacterium acnes HL097PA1] gi|327331905|gb|EGE73642.1| putative ribonuclease D [Propionibacterium acnes HL096PA3] gi|327443108|gb|EGE89762.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA2] gi|327445890|gb|EGE92544.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA2] gi|327448129|gb|EGE94783.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA1] gi|327450750|gb|EGE97404.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA3] gi|327453907|gb|EGF00562.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA2] gi|328753437|gb|EGF67053.1| 3'-5' exonuclease [Propionibacterium acnes HL020PA1] gi|328754168|gb|EGF67784.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA1] gi|328760820|gb|EGF74386.1| putative ribonuclease D [Propionibacterium acnes HL099PA1] gi|332675465|gb|AEE72281.1| ribonuclease D [Propionibacterium acnes 266] Length = 412 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G GT + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203 >gi|325120384|emb|CBZ55938.1| Ribonuclease D, related [Neospora caninum Liverpool] Length = 1387 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 2/161 (1%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 + E + +A+D E R C++QLS + I + + L + Sbjct: 470 LVDELSTGAHPLVAIDLEHHSFHSYRGFTCLLQLSTREKDYLIDPFPLFE-HLHVLNAIT 528 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + K KIFH DI L F V V +F T +A+R L + L G+ Sbjct: 529 ANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPGGA-SLANLLHTYCGVE 587 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +K Q +DW L+ E YA SD +L + +L Sbjct: 588 ANKQYQLADWRRRPLTPEMEAYARSDTHYLPFIFDVMKNQL 628 >gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo] Length = 888 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 3/152 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 A+D E C++Q+S II + + L D K+ Sbjct: 303 CKEFALDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMSILNETFTDPAIVKVL 361 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L FG+ + +F T A+RL +H L LK ++ K Q +D Sbjct: 362 HGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLG--KHSLDHLLKLYCSVDADKQYQLAD 419 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 W L +E +QYA D +L + + E L Sbjct: 420 WRIRPLPEEMIQYARDDTHYLLYIYDKMREAL 451 >gi|314918304|gb|EFS82135.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA1] Length = 412 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G GT + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203 >gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus] Length = 885 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L + K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRMEDF-IIDTLELRSDMYILNESLTNPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK + +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L +E L YA D +L + + +L G S Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLELWDRGNSQPVQ 465 >gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus] Length = 860 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L + K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRMEDF-IIDTLELRSDMYILNESLTNPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK + +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L +E L YA D +L + + +L G S Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLELWDRGNSQPVQ 465 >gi|170112858|ref|XP_001887630.1| predicted protein [Laccaria bicolor S238N-H82] gi|164637532|gb|EDR01817.1| predicted protein [Laccaria bicolor S238N-H82] Length = 854 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 63/168 (37%), Gaps = 3/168 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I + + IAVD E LC++Q+S + I+ + A + Sbjct: 245 ISTPDELQAMLAKLKKATEIAVDLEHHSYRSYTGFLCLMQISDREND-WIVDLLALRDEI 303 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D K K+ H D+ L F V + +F T AS+L +HGL + L Sbjct: 304 EQLNEIFTDPKIVKVLHGAESDVVWLQQDFNVYIVNLFDTFHASKLLD--FPRHGLANLL 361 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K Q +DW L E L YA SD L + L Sbjct: 362 EMYCDYIPDKRYQLADWRIRPLPQEMLDYARSDTHFLLFIYDNLRNAL 409 >gi|289427165|ref|ZP_06428881.1| 3'-5' exonuclease [Propionibacterium acnes J165] gi|289159634|gb|EFD07822.1| 3'-5' exonuclease [Propionibacterium acnes J165] Length = 395 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G GT + +A G L L Sbjct: 13 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 72 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 73 TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 127 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 128 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 186 >gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis] Length = 673 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLELWERG 459 >gi|313213333|emb|CBY37160.1| unnamed protein product [Oikopleura dioica] Length = 689 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R +AVD E + C+VQ+S + +A + L + + K Sbjct: 272 LREESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMY-KLNEVFANPKIV 330 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KIFH R D+ L FGV V +F T A++ + L L+ I + K Q Sbjct: 331 KIFHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLD--LAKKSLDYLLQHYCKIRLDKRFQ 388 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW + L+YA D +L + + L++L Sbjct: 389 LADWRMRPIPPNMLRYARQDTHYLLYVYDRLRADLEKL 426 >gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated autoantigen homolog [Mus musculus] Length = 831 Score = 161 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459 >gi|114553916|ref|XP_514382.2| PREDICTED: exosome component 10 isoform 5 [Pan troglodytes] Length = 885 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + ++ G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459 >gi|293192610|ref|ZP_06609564.1| putative ribonuclease D [Actinomyces odontolyticus F0309] gi|292820117|gb|EFF79114.1| putative ribonuclease D [Actinomyces odontolyticus F0309] Length = 414 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 11/183 (6%) Query: 7 HEGDI--PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNA 63 + D+ A + IA+D E +VQ+ D GT I + Sbjct: 33 TQKDLEAAAHALSAGSAPIALDVERAQGFRYGSDPYLVQIRREDVGTFLID--THALPDL 90 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D + H D+ L G+R +F T+IA+RL + GL + Sbjct: 91 SVLQPGVED---VWLLHDCLQDLPNL-RQVGLRPSALFDTEIAARLIG--LERFGLAAVV 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +++LG+ + K Q+SDWS L E L+YAA DV L L + +++L +GR + A Sbjct: 145 EQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTELYYRLSKRLDEMGRWEWAQQE 204 Query: 184 CNF 186 + Sbjct: 205 FAY 207 >gi|123226358|emb|CAM23946.1| exosome component 10 [Mus musculus] Length = 728 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459 >gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4] gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4] Length = 1195 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 3/157 (1%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + IA+D E + C++Q+S I + + + L + + K+ Sbjct: 264 HCQEIAIDLEHHSYRTYQGFTCLMQISTRSEDFLIDTLLL-RSHIHMLNQVFTNPSIVKV 322 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H DI L FGV + +F T ASR+ L LK I+ +K Q + Sbjct: 323 LHGSDSDIKWLQRDFGVYIVNMFDTGQASRILEY--PSASLAFLLKFYCAIDANKKYQLA 380 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 DW L +E ++YA D +L + + +L G Sbjct: 381 DWRIRKLPEEMIKYAREDTHYLLYIYDRLRNELISKG 417 >gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10, partial [Taeniopygia guttata] Length = 504 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 3/157 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 A+D E C++Q+S I +A + + L D K+ Sbjct: 311 CKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLAL-RSDMNILNETFTDPAIVKVL 369 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L FG+ + VF T A+RL +H L LK G++ K Q +D Sbjct: 370 HGADSDVEWLQRDFGLYLVNVFDTHQAARLLNLG--RHSLDHLLKLYCGVDADKKYQLAD 427 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 W L +E ++YA D +L + + E L G+ Sbjct: 428 WRIRPLPEEMIRYARDDTHYLLYIYDKVRELLWERGK 464 >gi|321465482|gb|EFX76483.1| hypothetical protein DAPPUDRAFT_226045 [Daphnia pulex] Length = 544 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 3/150 (2%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I VD E R C++Q+S I + P L + D KIF Sbjct: 118 VIGVDLEHHSDRSYRGITCLMQISTDKTDYIIDTLQLWDHLQP-LNKVFCDPNIVKIFQG 176 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L FG+ V +F T A+ L GL L+ ++++K Q +DW Sbjct: 177 ADSDVIWLQRDFGIYVVNLFDTLQAASLLGFQKK--GLYFLLQHYCQVHVNKKYQLADWR 234 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L E ++YA D +L + + + L Sbjct: 235 IRPLPQEMVKYAREDTHYLIYIYERMKQDL 264 >gi|239917797|ref|YP_002957355.1| ribonuclease D [Micrococcus luteus NCTC 2665] gi|239839004|gb|ACS30801.1| ribonuclease D [Micrococcus luteus NCTC 2665] Length = 416 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 6/170 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +AVD E + R +VQL + ++ A AP + E I Sbjct: 45 TGPVAVDAERASGIRYGQRAMLVQLKREGAGIWLVDPEALDGLAPLQEAL---TGVEWIL 101 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+R +F T++A+R+ + GL L+ELLG+ ++K ++D Sbjct: 102 HAASQDLPCLAEQ-GLRPDRLFDTELAARVAG--LPRVGLVAVLEELLGVTLAKEHSAAD 158 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 WS L + L YAA DV L LR +L+ G+ A + Sbjct: 159 WSVRPLPEAMLTYAALDVELLVPLREALIARLEADGKLAWAEQEFEHVRT 208 >gi|187466071|emb|CAQ51625.1| exosome component 10 [Mus musculus] Length = 727 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 309 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 367 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 368 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 425 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 426 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 458 >gi|281413711|ref|ZP_06245453.1| ribonuclease D [Micrococcus luteus NCTC 2665] Length = 415 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 6/170 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +AVD E + R +VQL + ++ A AP + E I Sbjct: 45 TGPVAVDAERASGIRYGQRAMLVQLKREGAGIWLVDPEALDGLAPLQEAL---TGVEWIL 101 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G+R +F T++A+R+ + GL L+ELLG+ ++K ++D Sbjct: 102 HAASQDLPCLAEQ-GLRPDRLFDTELAARVAG--LPRVGLVAVLEELLGVTLAKEHSAAD 158 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 WS L + L YAA DV L LR +L+ G+ A + Sbjct: 159 WSVRPLPEAMLTYAALDVELLVPLREALIARLEADGKLAWAEQEFEHVRT 208 >gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens] gi|8928564|sp|Q01780|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma overlap syndrome-associated autoantigen; AltName: Full=Polymyositis/scleroderma autoantigen 100 kDa; Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma autoantigen 2 gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens] gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens] gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens] gi|56204112|emb|CAI22107.1| exosome component 10 [Homo sapiens] gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens] gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct] gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct] gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct] Length = 885 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + ++ G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459 >gi|332807618|ref|XP_001136533.2| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes] Length = 909 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + ++ G Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483 >gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus] Length = 705 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 287 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 345 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 346 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 403 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 404 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 436 >gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens] gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens] gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens] gi|56204111|emb|CAI22106.1| exosome component 10 [Homo sapiens] Length = 860 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + ++ G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459 >gi|212528170|ref|XP_002144242.1| exosome complex exonuclease Rrp6, putative [Penicillium marneffei ATCC 18224] gi|210073640|gb|EEA27727.1| exosome complex exonuclease Rrp6, putative [Penicillium marneffei ATCC 18224] Length = 795 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 7/167 (4%) Query: 10 DIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D P A + + IAVD E + + ++Q+S D + + +++ Sbjct: 232 DTPEGVAEMVKELKKANEIAVDLEHHDMHTYYGLVSLMQISTRDKDWVVDTLQPWREDLQ 291 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + D K+FH DI L G+ V +F T A+ + + + LK L+ Sbjct: 292 QLNEVFADPNILKVFHGSTMDIVWLQRDLGLYVVGLFDTYHAA-VALGFPKR-SLKFLLE 349 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K Q +DW L++E L+YA +D +L + +L Sbjct: 350 KYARYEADKKYQMADWRLRPLTEEMLRYARADTHYLLYIYDCLRNEL 396 >gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans] Length = 741 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 6/176 (3%) Query: 3 TIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T + A AA +AVD E + C++QLS I+ + + Sbjct: 220 TFVETVEGLDALIAALSACREVAVDLEHHDFRSFQGITCLMQLSTRSED-YIVDVLRLRS 278 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + L + +D K+FH + D+ L FG+ V +F T IA +T H L Sbjct: 279 HMHRLNRVFLDTNILKVFHGAKEDVRWLQKDFGLYVANMFDTGIA---LQTLHMPHSLAF 335 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGR 176 + G+ + K Q++DW + E + YA D +L + + L GR Sbjct: 336 AVDHFCGVRLDKKYQTADWRIRPVPSEMIHYARQDTHYLLYVHDRLKALLLHAEGR 391 >gi|314988091|gb|EFT32182.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA2] Length = 412 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G GT + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWPGYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203 >gi|313812910|gb|EFS50624.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA1] Length = 412 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G GT + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L +G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEVGKEEWARQEFAHLVEVA 203 >gi|332807620|ref|XP_001136452.2| PREDICTED: exosome component 10 isoform 3 [Pan troglodytes] Length = 884 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + ++ G Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483 >gi|184201057|ref|YP_001855264.1| putative ribonuclease D [Kocuria rhizophila DC2201] gi|183581287|dbj|BAG29758.1| putative ribonuclease D [Kocuria rhizophila DC2201] Length = 420 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 73/179 (40%), Gaps = 8/179 (4%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 AE A +AVDTE R +VQL G GTV I A G + + L Sbjct: 36 AAEQLAAAHGPVAVDTERASGFRYGQRAFLVQLRREGAGTVLIDPEAVG--SLAEVDEAL 93 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 E + H D+ L + +F T++ RL + GL +ELLG Sbjct: 94 R--GVEWVLHAATQDMPCL-AELDMHPDELFDTELGGRLLG--LRKVGLASMTEELLGFT 148 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +SK + DWS L + L YAA DV L LR E+L R G+ D A + Sbjct: 149 LSKEHSAVDWSQRPLPVDWLNYAALDVEVLVQLRWATEERLARAGKLDWALEEFEHVRT 207 >gi|262199835|ref|YP_003271044.1| ribonuclease D [Haliangium ochraceum DSM 14365] gi|262083182|gb|ACY19151.1| Ribonuclease D [Haliangium ochraceum DSM 14365] Length = 400 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 8/170 (4%) Query: 26 DTETLGLMPRRDRLCIVQLSPGD----GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 D E L +VQ+S GD I +A + ++ ++ D + H Sbjct: 33 DFEFASDGRFLAELALVQVSWGDPEAPEIALIDSVAV---DPTPVLRLIGDPAVVSVAHA 89 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 + D+ +L F + + T+IA+ Q G + LLG+ + KA Q + W Sbjct: 90 AKQDLGILAARFDIFAENFWDTQIAAAFV-GMAEQIGYGKLVDALLGVQLDKASQFTKWL 148 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 LS QL+YAA DV +L + +++L LGR L A Sbjct: 149 ERPLSPAQLRYAADDVRYLPRVWAHLSQRLDELGRRAWVGEESALLARDA 198 >gi|225439201|ref|XP_002269553.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 912 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 4/160 (2%) Query: 14 ECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 E AA+ V+ AVD E + C++Q+S + + P L + Sbjct: 238 ELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHVGPYLREVFK 297 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D ++K+ H DI L FG+ + +F T ASR+ + ++ L+ L G+ Sbjct: 298 DPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQASRVLK--LERNSLEHLLHHYCGVTA 355 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +K Q+ DW L E L+YA D +L + +L Sbjct: 356 NKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYDLMRTQL 395 >gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens] Length = 884 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + ++ G Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483 >gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens] Length = 899 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + ++ G Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483 >gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera] Length = 901 Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 4/160 (2%) Query: 14 ECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 E AA+ V+ AVD E + C++Q+S + + P L + Sbjct: 227 ELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHVGPYLREVFK 286 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D ++K+ H DI L FG+ + +F T ASR+ + ++ L+ L G+ Sbjct: 287 DPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQASRVLK--LERNSLEHLLHHYCGVTA 344 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +K Q+ DW L E L+YA D +L + +L Sbjct: 345 NKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYDLMRTQL 384 >gi|159037106|ref|YP_001536359.1| 3'-5' exonuclease [Salinispora arenicola CNS-205] gi|157915941|gb|ABV97368.1| 3'-5' exonuclease [Salinispora arenicola CNS-205] Length = 451 Score = 160 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 17/171 (9%) Query: 13 AECAARY---VDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 A AR+ +A+D E R +VQL G GT I + P L Sbjct: 71 AGVVARFSAGTGPVALDAERASGYRYSQRAYLVQLRRAGAGTALIDPLP-----LPELTT 125 Query: 69 MLVDEKR---EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 + DE E + H D+ L G+R R +F T++A+RL + GL + Sbjct: 126 L--DEAIGEAEWVLHAASQDLPCL-AELGLRPRRLFDTELAARLAG--FERVGLAALTEH 180 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LLG ++ K ++DWS+ L + L YAA DV L LR +L R G+ Sbjct: 181 LLGFSLEKHHSAADWSSRPLPESWLTYAALDVELLVELRDALEAELTRQGK 231 >gi|257068547|ref|YP_003154802.1| ribonuclease D [Brachybacterium faecium DSM 4810] gi|256559365|gb|ACU85212.1| ribonuclease D [Brachybacterium faecium DSM 4810] Length = 399 Score = 160 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 8/179 (4%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLV 71 A+ + +AVD E R +VQL GT I +A L +L Sbjct: 32 EAAASAPEEPVAVDAERASSYRYSSRAYLVQLRTEAAGTALIDPLAFTMPA--TLRSLLA 89 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 +RE + H D+ L G+ +F T++A+RL + GL +++ LG+ + Sbjct: 90 --EREWVLHAAGQDLPSL-AEIGLEPGGLFDTELAARLLGM--ERVGLGAVVEDTLGLRL 144 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +K ++DWS L + L YAA DV L +R E+L+ + D A R Sbjct: 145 AKEHSAADWSRRPLPEGWLTYAALDVEVLVEVRDVLRERLREACKEDWARQEFEHERVR 203 >gi|221121078|ref|XP_002157951.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 758 Score = 160 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + V IAVD E + LC++Q+S I +A ++ + + D Sbjct: 257 LKKVKEIAVDLEHHSYRSFQGFLCLMQISTRFEDFIIDTLAL-REEMYKINEIFSDPNIL 315 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L FGV V +F T A+R + ++ L L + ++ K Q Sbjct: 316 KVMHGADSDIGWLQRDFGVYVVNMFDTGQAARTL--HEDRFSLAYLLSKYCNVDAQKQYQ 373 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +DW + E + YA D +L + +L G Sbjct: 374 LADWRIRPIPKEMILYAQEDTHYLLYVYDILRNQLLNKG 412 >gi|145594075|ref|YP_001158372.1| 3'-5' exonuclease [Salinispora tropica CNB-440] gi|145303412|gb|ABP53994.1| 3'-5' exonuclease [Salinispora tropica CNB-440] Length = 451 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 17/171 (9%) Query: 13 AECAARY---VDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68 AE AR+ +A+D E R +VQL G GT I + P L Sbjct: 71 AEVVARFSQGTGPVALDAERASGYRYSQRAYLVQLRRAGAGTALIDPLP-----LPELTS 125 Query: 69 MLVDEKR---EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 + DE E + H D+ L G+R R +F T++A+RL + GL + Sbjct: 126 L--DEAIGEAEWVLHAASQDLYCL-AELGLRPRRLFDTELAARLAG--FERVGLAALTEN 180 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LLG ++ K ++DWS+ L + L YAA DV L LR +L R G+ Sbjct: 181 LLGFSLEKHHSAADWSSRPLPESWLTYAALDVELLVELRDALDAELTRQGK 231 >gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus] gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus] gi|296479174|gb|DAA21289.1| exosome component 10 [Bos taurus] Length = 702 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK + +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCSVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLELWERG 459 >gi|282853987|ref|ZP_06263324.1| 3'-5' exonuclease [Propionibacterium acnes J139] gi|282583440|gb|EFB88820.1| 3'-5' exonuclease [Propionibacterium acnes J139] gi|314923384|gb|EFS87215.1| 3'-5' exonuclease [Propionibacterium acnes HL001PA1] gi|314981064|gb|EFT25158.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA3] gi|315091889|gb|EFT63865.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA4] gi|315093353|gb|EFT65329.1| 3'-5' exonuclease [Propionibacterium acnes HL060PA1] gi|327327556|gb|EGE69332.1| putative ribonuclease D [Propionibacterium acnes HL103PA1] Length = 412 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G T + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPKVSLGPMVEHYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEIA 203 >gi|311742288|ref|ZP_07716097.1| ribonuclease D [Aeromicrobium marinum DSM 15272] gi|311313916|gb|EFQ83824.1| ribonuclease D [Aeromicrobium marinum DSM 15272] Length = 411 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 8/174 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 AR +A+D E R +VQL G GT + I G +L + D Sbjct: 46 ARGSGPVALDAERASGYRYSQRAYLVQLRREGSGTHLVDPIGFGG--LEDLDDAIGDA-- 101 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H D+ L G+R R +F T+ A RL + GL ++ LG +++K Sbjct: 102 EWILHAATQDLPCL-AEIGLRPRALFDTEHAGRLLN--LPRVGLATLVEHFLGRSLAKEH 158 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++DWS L + L YAA DV L LR +L+ G+ + A L+ Sbjct: 159 SAADWSTRPLPEPWLVYAALDVEVLVELRDLLDAELREAGKREWAAQDFEALLS 212 >gi|315103391|gb|EFT75367.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA2] Length = 412 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G T + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPKVSLGPMVEHYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEIA 203 >gi|149174964|ref|ZP_01853588.1| ribonuclease D [Planctomyces maris DSM 8797] gi|148846301|gb|EDL60640.1| ribonuclease D [Planctomyces maris DSM 8797] Length = 395 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 80/203 (39%), Gaps = 6/203 (2%) Query: 2 TTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + + V + + A C R +A DTE + R L ++Q + V + Sbjct: 3 SPLIVQQSEFIALCDQIRDAGIVAFDTEFVSEFTYRPELSLLQFAVNGQAVAVDPYE--M 60 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + ++ D+ + H GR ++ + G + R + +IA L R+ + Sbjct: 61 DDLSPWWDIMTDDDTVIVVHGGREEVRFCRHFSGKKPRKLVDLQIAEGL-RSRSFPISYT 119 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + +L + +DW L+ +Q++YA DV + + ++L LGR D A Sbjct: 120 ALVARVLNEKAGSKETRTDWRRRPLTQQQIKYALDDVKFVLKIWKIQEKELIDLGRLDWA 179 Query: 181 TSCCNFLMDRAELDLLG--WENV 201 + ++D + + W V Sbjct: 180 EAEFQRMIDEVDSEFHRENWRRV 202 >gi|314966730|gb|EFT10829.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA2] Length = 412 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 + IA+DTE R C++QL G T + +A G L L Sbjct: 30 ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L G+R +F T++A RL + L ++ G+ + Sbjct: 90 TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPKVSLGPMVEHYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + YAA DV L+ LR + L G+ + A L++ A Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEIA 203 >gi|315655438|ref|ZP_07908338.1| ribonuclease D [Mobiluncus curtisii ATCC 51333] gi|315490378|gb|EFU80003.1| ribonuclease D [Mobiluncus curtisii ATCC 51333] Length = 406 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 8/177 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A +A+DTE G +VQL G GT I IA P + Sbjct: 32 ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAFP-DLEPLSRAI--- 87 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K E I H D+ L G+R + +F T++A++L GL L+++LGI+++ Sbjct: 88 GKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNFQG--FGLAAVLEQVLGISLA 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 K ++DWS L + YAA DV +L LR +LQ + D A +FL+D Sbjct: 145 KEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201 >gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus] Length = 886 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + L L + K+FH Sbjct: 307 FAVDLEHHSYRSFLGLTCLMQVSTRTEDF-IIDTLELRSEMYLLNESLTNPTIVKVFHGA 365 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ K Q +DW Sbjct: 366 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCSVDSDKQYQLADWRI 423 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 424 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 456 >gi|304389402|ref|ZP_07371365.1| ribonuclease D [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327212|gb|EFL94447.1| ribonuclease D [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 406 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 8/177 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A +A+DTE G +VQL G GT I IA P + Sbjct: 32 ELVADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAFP-DLEPLSRAI--- 87 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K E I H D+ L G+R + +F T++A++L GL L+++LGI+++ Sbjct: 88 GKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNFQG--FGLAAVLEQVLGISLA 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 K ++DWS L + YAA DV +L LR +LQ + D A +FL+D Sbjct: 145 KEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201 >gi|308473314|ref|XP_003098882.1| hypothetical protein CRE_31359 [Caenorhabditis remanei] gi|308268021|gb|EFP11974.1| hypothetical protein CRE_31359 [Caenorhabditis remanei] Length = 860 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 5/169 (2%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 VD E + C++Q+S D I L + K K+FH Sbjct: 292 VDLEHHEMRTYLGLTCLIQISTRDEDFIIDPFPMWDCIG-ILNEPFTNPKILKVFHGADN 350 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 D+ L FG+ + +F T +A + + + L + + K Q +DW A Sbjct: 351 DVLWLQRDFGIHIVNLFDTYVAMKKLKY--PKFSLAYLAFRFADVILDKQYQLADWRARP 408 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL--ATSCCNFLMDRA 191 L + + YA D +L E+L + + DL S CN L R Sbjct: 409 LRNAMINYAREDTHYLLYSYDMLREQLLKQDKKDLNVVYSECNDLCVRV 457 >gi|315656649|ref|ZP_07909536.1| ribonuclease D [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492604|gb|EFU82208.1| ribonuclease D [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 406 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 8/177 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A +A+DTE G +VQL G GT I IA P + Sbjct: 32 ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAFP-DLEPLSRAI--- 87 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K E I H D+ L G+R + +F T++A++L GL L+++LGI+++ Sbjct: 88 GKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNFQG--FGLAAVLEQVLGISLA 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 K ++DWS L + YAA DV +L LR +LQ + D A +FL+D Sbjct: 145 KEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201 >gi|154508933|ref|ZP_02044575.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC 17982] gi|153798567|gb|EDN80987.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC 17982] Length = 414 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 11/183 (6%) Query: 7 HEGDI--PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNA 63 + D+ A + IA+D E +VQ+ D GT I + Sbjct: 33 TQKDLEAAARALSTGSAPIALDVERAQGFRYGSDPYLVQIRREDVGTFLID--THALPDL 90 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D + H D+ L G+R +F T+IA+RL + GL + Sbjct: 91 SVLQPGVED---VWLLHDCLQDLPNL-RQVGLRPSTLFDTEIAARLIG--LERFGLAAVV 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +++LG+ + K Q+SDWS L E L+YAA DV L L + +++L +GR + A Sbjct: 145 EQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTELYYRLSKRLDEMGRWEWAQQE 204 Query: 184 CNF 186 + Sbjct: 205 FGY 207 >gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo] gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis] Length = 879 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 2/153 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + +A+D E R +C+VQ++ D I + + L + D + Sbjct: 331 LLKKCSIVAIDVEHHSTQSYRGFVCLVQITGADDDWVIDPFSIFDEMW-RLNDVTTDPRI 389 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H DI L FGV V +F T A+ + + H L ++ LGI++ K+ Sbjct: 390 LKVMHGAESDILWLQRDFGVYVVNLFDTLKAADVLC-LSCGHSLSSLVRHFLGIHLDKSY 448 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 Q +DW + + L YA +D +L L Sbjct: 449 QLADWRIRPIPRDMLTYATADTHYLLDLYSALK 481 >gi|114553924|ref|XP_001136359.1| PREDICTED: exosome component 10 isoform 2 [Pan troglodytes] Length = 811 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + ++ G Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483 >gi|269977281|ref|ZP_06184254.1| ribonuclease D [Mobiluncus mulieris 28-1] gi|307701108|ref|ZP_07638133.1| putative ribonuclease D [Mobiluncus mulieris FB024-16] gi|269934584|gb|EEZ91145.1| ribonuclease D [Mobiluncus mulieris 28-1] gi|307614103|gb|EFN93347.1| putative ribonuclease D [Mobiluncus mulieris FB024-16] Length = 422 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 6/175 (3%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 E A ++A+DTE G +VQL D +I A P + Sbjct: 49 ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEPLGAAI---G 105 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K E I H D+ L G+R + +F T++A++L + GL +++LGI + K Sbjct: 106 KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLN--FERFGLGSLTEQVLGIMLEK 162 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++DWS L L+YAA DV L LR +L G+ D A L+ Sbjct: 163 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 217 >gi|298346894|ref|YP_003719581.1| ribonuclease D [Mobiluncus curtisii ATCC 43063] gi|298236955|gb|ADI68087.1| ribonuclease D [Mobiluncus curtisii ATCC 43063] Length = 406 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 8/177 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A +A+DTE G +VQL G GT I IA P + Sbjct: 32 ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAFP-DLEPLSRAI--- 87 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K E I H D+ L G+R + +F T++A++L GL L+++LGI+++ Sbjct: 88 GKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNFQG--FGLAAVLEQVLGISLA 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 K ++DWS L + YAA DV +L LR +LQ + D A +FL+D Sbjct: 145 KEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201 >gi|93005631|ref|YP_580068.1| 3'-5' exonuclease [Psychrobacter cryohalolentis K5] gi|92393309|gb|ABE74584.1| 3'-5' exonuclease [Psychrobacter cryohalolentis K5] Length = 380 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 6/172 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +A+DTE + RL ++QL+ G+ + Q L L+ Sbjct: 13 ALTTCGRVALDTEFIKRDTYYPRLALIQLNTGNHVYLLDAP---QLQLSELWQALMKVDV 69 Query: 76 EKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 I+H D+ + + G +F T+IA Q G + L E L ++I K Sbjct: 70 A-IWHACGEDLGIFYLLSGCPPLTNIFDTQIALSYLTGQL-QMGYQQALDEQLDMHIDKE 127 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 Q SDW LSDEQ QYA DV L AL L L+ G + C Sbjct: 128 QSQSDWLQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQGLYEYVWEDCQL 179 >gi|322708171|gb|EFY99748.1| exosome complex exonuclease Rrp6, putative [Metarhizium anisopliae ARSEF 23] Length = 830 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 79/201 (39%), Gaps = 4/201 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +EG + R IAVD E +C++Q+S D + + + Sbjct: 226 VDTYEGVLEMLEELRKAKEIAVDLEHHDFRTYTGLVCLMQVSTRDRDWIVDTLQPWRHKL 285 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D K+FH D+ L G+ V +F T A L L L Sbjct: 286 EVLNDVFADPSVVKVFHGAYMDMVWLQRDLGLYVNGLFDTYFACNLLNYPGR--SLAFLL 343 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSDLATS 182 + +G + K Q +DW + ++ L YA SD +L + +L + +SD Sbjct: 344 SKFVGFDADKQYQLADWRIRPIPEDMLYYARSDTHYLLYIYDNVRNELIEASDKSDPEKD 403 Query: 183 CCNFLMDRA-ELDLLGWENVD 202 N ++R+ EL L EN D Sbjct: 404 YINQALERSRELALSRHENPD 424 >gi|114553922|ref|XP_001136272.1| PREDICTED: exosome component 10 isoform 1 [Pan troglodytes] Length = 768 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + ++ G Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483 >gi|305680942|ref|ZP_07403749.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266] gi|305659147|gb|EFM48647.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266] Length = 408 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 7/177 (3%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72 + A+ AVDTE + +R+C++Q+ G GT+ I + Q + +L D Sbjct: 30 DRLAQGTGWCAVDTERVSGFRYHNRVCLLQIRRAGAGTMLIDVESDPQATTDFMGRVLTD 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H D+ L +R +F T++A R + + L ++ LG+ + Sbjct: 90 TG--WVVHAATSDLPYLEQ-LRLRPAQLFDTELAGRFLGFH--RVNLAAMVEHYLGVRLR 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFLM 188 K DWS + E L YAA DV +L L +L + + + C++L Sbjct: 145 KNHGGEDWSRRPIPSEWLDYAALDVEYLLPLADAMRSELTQQSPKDEWVAEECDYLT 201 >gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii] gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii] Length = 512 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 6/172 (3%) Query: 11 IPA----ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 +PA IAVD E + +C++Q+S + + P L Sbjct: 230 LPALETMAAKLHASSEIAVDLENHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVL 289 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K+ H DI L FG+ V +F T A+R+ R + GL L+ Sbjct: 290 RSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDTGQAARVLRM--ERFGLAFLLQTF 347 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 G+ K Q +DW LS E L+YA D +L + + L+ ++ Sbjct: 348 CGVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYVYDKMKGMLRDAETTE 399 >gi|306818778|ref|ZP_07452500.1| ribonuclease D [Mobiluncus mulieris ATCC 35239] gi|304648464|gb|EFM45767.1| ribonuclease D [Mobiluncus mulieris ATCC 35239] Length = 422 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 6/175 (3%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 E A ++A+DTE G +VQL D +I A P + Sbjct: 49 ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEPLGTAI---G 105 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K E I H D+ L G+R + +F T++A++L + GL +++LGI + K Sbjct: 106 KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLN--FERFGLGSLTEQVLGIMLEK 162 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++DWS L L+YAA DV L LR +L G+ D A L+ Sbjct: 163 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 217 >gi|302833517|ref|XP_002948322.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f. nagariensis] gi|300266542|gb|EFJ50729.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f. nagariensis] Length = 191 Score = 159 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 2/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + +AVD E + C++Q+S + +A + P L + D + Sbjct: 16 LEAAEELAVDLEHHSHRSFQGFTCLMQISTRTTDYVVDTLALRNQLGPALARVFADPRVV 75 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH D+ L F + + +F T A+R+ GL L+ + G+ K Q Sbjct: 76 KVFHGADSDVDWLQRDFSLFLVNMFDTGQAARVLG--LPSFGLAYLLESICGVQADKRYQ 133 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW LS L YA D +L + + E+L L Sbjct: 134 MADWRVRPLSPPMLHYARCDTHYLLYVYDKLREQLAAL 171 >gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428] gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428] Length = 352 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 6/170 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 I +DTE L ++LC++Q+S + I +A + L + Sbjct: 17 LLAPHPRIPIDTEADSLHCYFEKLCLIQISVPGHDLLIDPLAGI--SLQPLFEAFA--GK 72 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E I H +D+ +L PVF T IA+RL + L +K + ++KA Sbjct: 73 ELIIHGADYDLRLLRRVGFTVTAPVFDTMIAARLCG--IEEFSLAALIKRYFDVALTKAS 130 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 Q ++W+ LS + YA D +L + +L RL R + C+ Sbjct: 131 QKANWARRPLSPQMADYAVKDTHYLLEIAGILEAELTRLDRMEWFRQSCD 180 >gi|115689891|ref|XP_001200735.1| PREDICTED: similar to exosome component 10, partial [Strongylocentrotus purpuratus] Length = 376 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 3/160 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + IAVD E C++Q+S + ++ + L D K Sbjct: 133 SLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHD-YVVDTLELRSELQMLNDAFTDPKI 191 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH D L G+ V +F T ASR H L L + K Sbjct: 192 VKVFHGANMDFDWLQRDLGLYVVNMFDTHQASRSLG--FPHHSLASLLSRYCQVEADKQY 249 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q +DW L +E L YA D +L + +L + G Sbjct: 250 QLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRG 289 >gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102] Length = 831 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 79/201 (39%), Gaps = 4/201 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +EG + R IAVD E +C++Q+S D + + + Sbjct: 226 VDTYEGVLEMLQELRKAKEIAVDLEHHDFRTYTGLVCLMQVSTRDQDWIVDTLQPWRHKL 285 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + + K+FH D+ L G+ V +F T A L L L Sbjct: 286 EVLNDVFANPSIVKVFHGAYMDMVWLQRDLGLYVNGLFDTYFACDLLNYPGK--SLAFLL 343 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSDLATS 182 + +G + K Q +DW + +E L YA SD +L + +L + +SD Sbjct: 344 SKFVGFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLYIFDNVRNELIEASDKSDPEKD 403 Query: 183 CCNFLMDRA-ELDLLGWENVD 202 N ++R+ EL L EN D Sbjct: 404 YINQALERSRELALSRHENPD 424 >gi|242767043|ref|XP_002341292.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus ATCC 10500] gi|218724488|gb|EED23905.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus ATCC 10500] Length = 771 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 7/167 (4%) Query: 10 DIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D P A + IAVD E + + ++Q+S D + + +++ Sbjct: 232 DTPEGVAEMVEELKKAKEIAVDLEHHDVHTYYGLVSLMQISTRDKDWVVDTLQPWREDLQ 291 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + D K+FH DI L G+ V +F T A+ + + + LK L+ Sbjct: 292 RLNEVFTDPNILKVFHGSTMDIVWLQRDLGLYVVSLFDTYHAA-VALGFPKR-SLKFLLE 349 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K Q +DW L+DE L+YA +D +L + +L Sbjct: 350 KYAHYEADKKYQMADWRLRPLTDEMLKYARADTHYLLYIYDCLRNEL 396 >gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus] Length = 497 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S I+ + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L L+ G+ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + +L G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459 >gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group] gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica Group] gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group] gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group] gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group] Length = 600 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 3/177 (1%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + + + V+ AVD E + C++Q+S + + Sbjct: 146 TLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIY 205 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L D + K+ H DI L F + V +F T ASR+ ++ L+ Sbjct: 206 IGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVL--QMERNSLEH 263 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L+ G+ +K Q++DW + LSDE ++YA D +L + +LQ+ SD Sbjct: 264 LLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQKESTSD 320 >gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis] gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis] Length = 883 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 5/165 (3%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 AVD E C++Q+S II + + N L + K+ Sbjct: 302 QCAEFAVDLEHHSYRSFLGLTCLMQISTRTED-YIIDVLELRSNLYILNESFTNPSIIKV 360 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH DI L FG+ + +F T A+R+ +H L L+ + K Q + Sbjct: 361 FHGADSDIEWLQKDFGLYIVNMFDTHQAARILNLG--RHSLDHLLRLYCNVESDKRYQLA 418 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDLAT 181 DW L +E L+YA D +L + + L G+ +L Sbjct: 419 DWRIRPLPEEMLEYARVDTHYLLYIYDKMRIALLDAANGQPNLLQ 463 >gi|227875468|ref|ZP_03993609.1| ribonuclease D [Mobiluncus mulieris ATCC 35243] gi|227844022|gb|EEJ54190.1| ribonuclease D [Mobiluncus mulieris ATCC 35243] Length = 397 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 6/175 (3%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 E A ++A+DTE G +VQL D +I A P + Sbjct: 24 ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEPLGAAI---G 80 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K E I H D+ L G+R + +F T++A++L + GL +++LGI + K Sbjct: 81 KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLN--FERFGLGSLTEQVLGIMLEK 137 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++DWS L L+YAA DV L LR +L G+ D A L+ Sbjct: 138 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 192 >gi|268532256|ref|XP_002631256.1| C. briggsae CBR-CRN-3 protein [Caenorhabditis briggsae] gi|187036904|emb|CAP23569.1| CBR-CRN-3 protein [Caenorhabditis briggsae AF16] Length = 868 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 5/174 (2%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 V+ +VD E + C++Q+S D I + L + K+F Sbjct: 290 VEEFSVDLEHHEMRTYLGLTCLIQISTRDEDFIIDPFPMWDRIG-ILNEPFTNPNILKVF 348 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L FGV V +F T +A + + + L + + K Q +D Sbjct: 349 HGSDNDVLWLQRDFGVHVVNLFDTYVAMKKLKY--PKFSLAYLAFRFADVVLDKQYQLAD 406 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL--ATSCCNFLMDRA 191 W A L + + YA D +L E+L + G DL + N L R Sbjct: 407 WRARPLRNAMINYAREDTHYLLYSYDMLREQLLQQGHKDLENVYAESNDLCIRV 460 >gi|256395899|ref|YP_003117463.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928] gi|256362125|gb|ACU75622.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928] Length = 443 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 21/180 (11%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD----E 73 +AVD E R +VQ+ G GT I IA P+L + D Sbjct: 56 GTGPVAVDAERASGYKYSQRAYLVQIRRQGAGTFLIDPIAC-----PDLSALAGDGPALA 110 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTKIASRLTRTYTNQHGLKDNLKE 125 E + H D+A L G+ +F T++ +RL + GL + E Sbjct: 111 GAEWVLHAASQDLACL-AEVGMHPPARRPDGTGGLFDTELGARL--GGHERVGLGPLVAE 167 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 +L + + K +SDWS L + L+YAA DV L +R ++L+ G+ D A + Sbjct: 168 VLKLELEKGHSASDWSTRPLPEAWLRYAALDVEVLVEVRDIIEDELRGAGKLDWARQEFD 227 >gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens] Length = 679 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + ++ G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459 >gi|312385767|gb|EFR30186.1| hypothetical protein AND_00361 [Anopheles darlingi] Length = 526 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 4/176 (2%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 HE + A + IA+D E + C++QLS + +A + Sbjct: 214 HESQLSALLSDLKAAPQIAIDLEHHSYRTFQGFTCLMQLSTRKKDYIVDTLAL-RDELHV 272 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L + D ++ K+ H DI L G+ + +F T A+R+ ++ GL+ LK Sbjct: 273 LNEVFTDPRKLKVLHGAISDIEWLQRDLGLYLVNMFDTGEAARVL--QFSRIGLQFLLKH 330 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 I KA Q +DW L ++YA D +L + + L G L Sbjct: 331 YCNIETDKAYQLADWRMRPLPPAFIEYARKDTHYLLYIYDRIRNDLLEKGGDSLLQ 386 >gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB] gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB] Length = 339 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 10/199 (5%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A I++DTE + R++LC+VQ+ T + L D Sbjct: 68 AREDLDSSSLISLDTEYDSMHYFREKLCLVQVRASKRTYVFDPF--NGIDLQFLRPYFAD 125 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + K+ H G DI +L +G R +F T A+ + + L +++ LG+ I Sbjct: 126 PRLLKVTHAGDNDIRILKRDYGFEFRNIFDTHRAAHMLG--SQYLALSSIIEQYLGVEIE 183 Query: 133 KA--QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD- 189 K Q S W A LS+ QL+YA D +L L EKL G + A + Sbjct: 184 KTKKMQRSKWEARPLSEGQLRYAVQDTAYLADLYRHLNEKLSLKGMQERARKVFENVAAV 243 Query: 190 ---RAELDLLGWENVDIFS 205 LDLLG + ++ Sbjct: 244 SWREKTLDLLGHRRISGYA 262 >gi|50552133|ref|XP_503541.1| YALI0E04444p [Yarrowia lipolytica] gi|49649410|emb|CAG79122.1| YALI0E04444p [Yarrowia lipolytica] Length = 738 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 4/162 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + + IA+D E + C+VQ+S + I IA +N +L D K Sbjct: 237 LKTQEEIAIDVEHHSMRTYYGITCLVQVSSREQDYIIDTIA--LRNLEIFNEVLTDPKIV 294 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L FG+ + +F T A++ H L L+ SK Q Sbjct: 295 KVLHGATMDIQWLQRDFGLYIVSLFDTFHAAQALG--LKGHSLAFLLQHYANFVTSKKYQ 352 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 SDW +S EQL YA +D L + Q L + + + Sbjct: 353 LSDWRIRPMSPEQLLYARADTHFLLNIYDQLKNALVQKDKIE 394 >gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group] Length = 599 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 3/177 (1%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + + + V+ AVD E + C++Q+S + + Sbjct: 145 TLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIY 204 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L D + K+ H DI L F + V +F T ASR+ ++ L+ Sbjct: 205 IGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVL--QMERNSLEH 262 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L+ G+ +K Q++DW + LSDE ++YA D +L + +LQ+ SD Sbjct: 263 LLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQKESTSD 319 >gi|315604318|ref|ZP_07879384.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310] gi|315314024|gb|EFU62075.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310] Length = 414 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 13/190 (6%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVG 68 D A+ A +A+D E +VQ+ D GT I P+L Sbjct: 38 DDAAKALALGRAPVALDVERAQGFRYGSDPYLVQIRREDVGTFLID-----THALPDLSA 92 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + + H D+ L G+ +F T+IA+RL + GL +++LG Sbjct: 93 LAPGVDDVWLLHDCLQDLPNL-RQVGLVPSSLFDTEIAARLVG--LERFGLAAVAEQVLG 149 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL- 187 + + K Q+SDWS L E L+YAA DV L L + +++L ++GR + A + Sbjct: 150 LGLVKDHQASDWSLRPLPPEWLRYAALDVELLTELYYRLSKRLDQMGRWEWAQQEFSHAL 209 Query: 188 ---MDRAELD 194 A+ D Sbjct: 210 SVRPSPAKPD 219 >gi|213510932|ref|NP_001133834.1| Exosome component 10 [Salmo salar] gi|209155512|gb|ACI33988.1| Exosome component 10 [Salmo salar] Length = 885 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 59/159 (37%), Gaps = 3/159 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AVD E C++Q+S D II + L D Sbjct: 303 LTKTSEFAVDLEHHSYRSFLGITCLMQISTRDEDF-IIDTLELRSELYILNEAFTDPAIV 361 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ + +F T ASR +H L LK ++ K Q Sbjct: 362 KVFHGADSDIEWLQKDLGLYIVNMFDTHQASRTLNLG--RHSLDHLLKLFCNVDSDKRYQ 419 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +DW L DE QYA +D +L + + L +G Sbjct: 420 LADWRIRPLPDEMFQYARADTHYLLYVYDRLRVDLWEVG 458 >gi|309811737|ref|ZP_07705515.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185] gi|308434349|gb|EFP58203.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185] Length = 459 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 16/194 (8%) Query: 2 TTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58 + + CAA +A+D E + +VQL G GT I + Sbjct: 56 PDVITTAAQLKECCAAIRAGHGPVAIDAERASGFRYGNDAYLVQLRREGAGTWLIDPVPL 115 Query: 59 GQKNAPNLVGMLVDEKR---EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 ++ ++ E + H D+ L G+R R +F T++ SRL Sbjct: 116 NDLSS-------LNTAIGSAEWVLHAATQDLPCL-KALGLRPRKLFDTELGSRLAG--LP 165 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + GL + +G+ ++K + DWS L + L YAA DV L +R L+ G Sbjct: 166 RVGLAAVTEHFVGVTLAKEHSAVDWSTRPLPHDWLVYAALDVERLVEVRDALAADLEAQG 225 Query: 176 RSDLATSCCNFLMD 189 +++ A L+D Sbjct: 226 KAEWARQEFEALLD 239 >gi|227495500|ref|ZP_03925816.1| ribonuclease D [Actinomyces coleocanis DSM 15436] gi|226831047|gb|EEH63430.1| ribonuclease D [Actinomyces coleocanis DSM 15436] Length = 402 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 10/193 (5%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGML 70 A+ ++ +A+D E R +VQ+ D GT I + + L L Sbjct: 29 AAQLLSKSTMPVAIDVERAVGYRYSHRAYLVQIRREDVGTFLID--SGTLPDLSILNEPL 86 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + I H DIA L G+ + +F T +A+RL + GL +++LG+ Sbjct: 87 NNA--VWILHDADQDIASL-RMCGLEIPELFDTMLAARLLGFQ--RFGLAAVCEQILGVT 141 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + K QS DWS L L+YAA DV L L + + L + R + A + ++ R Sbjct: 142 LDKNHQSDDWSTRPLPRPWLRYAALDVELLTDLYEKMSHSLFKANRWEWAQQEFHNILTR 201 Query: 191 --AELDLLGWENV 201 + D W N+ Sbjct: 202 PTKKPDSEPWRNL 214 >gi|325183710|emb|CCA18169.1| exosome complex exonuclease RRP6like protein putativ [Albugo laibachii Nc14] Length = 770 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 3/157 (1%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 + A+A+D E C++Q+S + + +A + + L + D + Sbjct: 236 LILQEAHALAIDLEHHNYRSYLGLTCLMQISTHNHDFLVDTLAL-RSSLQLLNQVFCDPQ 294 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 + K+ H DI L G+ V +F T A+R+ + L LK+ I K Sbjct: 295 KLKVLHGADMDILWLQRDLGLYVVNMFDTGRAARVL--QLPRFSLAYLLKKCCDIEADKQ 352 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 Q +DW L++E +YA D +L + + E+L Sbjct: 353 YQLADWRQRPLTEEMTRYAREDTRYLLFIYRKMKEEL 389 >gi|156844457|ref|XP_001645291.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM 70294] gi|156115951|gb|EDO17433.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM 70294] Length = 746 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 62/174 (35%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + +A + L + D Sbjct: 228 LKECTEIAVDLEHHDYRSYYGIVCLMQISTRKEDFLVDTLAL-RDELHILNEVFADPNIL 286 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ V +F T ASR +H L L++ SK Q Sbjct: 287 KVLHGAFMDIIWLQRDLGLYVVSLFDTYHASRALG--FPRHSLAYLLEKYANFKTSKKYQ 344 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW LS YA +D L + Q +L R + + R Sbjct: 345 LADWRVRPLSKPMHAYARADTHFLLNIYDQIRNQLIRENKLAEVLFESRNVAKR 398 >gi|47498064|ref|NP_998833.1| exosome component 10 [Xenopus (Silurana) tropicalis] gi|45708813|gb|AAH67962.1| exosome component 10 [Xenopus (Silurana) tropicalis] Length = 883 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 3/153 (1%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 AVD E C++Q+S II + + N L + K+ Sbjct: 302 QCAEFAVDLEHHSYRSFLGLTCLMQISTRTED-YIIDVLELRSNMYILNESFTNPSIIKV 360 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H DI L FG+ + +F T A+R+ +H L L+ + K Q + Sbjct: 361 LHGADSDIEWLQKDFGLYIVNMFDTHQAARILNLG--RHSLDHLLRLYCNVESDKRYQLA 418 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 DW L +E ++YA +D +L + + L Sbjct: 419 DWRIRPLPEEMIEYARADTHYLLFIYDKMRTAL 451 >gi|157124837|ref|XP_001660547.1| hypothetical protein AaeL_AAEL010007 [Aedes aegypti] gi|108873835|gb|EAT38060.1| conserved hypothetical protein [Aedes aegypti] Length = 949 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 4/174 (2%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I E +P + +A+D E + C++Q+S I +A ++ Sbjct: 272 DIIDKESQLPGLLKELKAAKELAIDLEHHSYRTYQGFTCLMQISTRSKDYIIDTLAL-RE 330 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + + K K+ H DI L + + +F T A+++ ++ GL+ Sbjct: 331 ELHILNEVFTNPKVVKVLHGAISDIEWLQRDLSLYIVNMFDTGEAAKVLE--FSRIGLQF 388 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 LK I+ KA Q +DW + ++YA D +L + + +L G Sbjct: 389 LLKHYCNIDTDKAYQLADWRIRPIPHNFIEYARKDTHYLLYIYDRMRNELIAKG 442 >gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor] gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor] Length = 702 Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 2/168 (1%) Query: 7 HEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 H+G + + V AVD E + C++Q+S + + L Sbjct: 157 HKGLVELAKKLKGVTEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIYIGLYL 216 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 D + K+ H DI L F + V +F T ASR+ ++ L+ L Sbjct: 217 QEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVL--QMERNSLEHLLLHF 274 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 G+ K Q++DW + L DE ++YA D +L + ++LQ+ Sbjct: 275 CGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQKE 322 >gi|225021280|ref|ZP_03710472.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii ATCC 33806] gi|224946013|gb|EEG27222.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii ATCC 33806] Length = 408 Score = 157 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 7/177 (3%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72 + A+ AVDTE + +R+C++Q+ G GT+ I + Q + +L D Sbjct: 30 DRLAQGTGWCAVDTERVSGFRYHNRVCLLQIRRAGAGTMLIDVESDPQATTDFMGRVLAD 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H D+ L +R +F T++A R + + L ++ LG+ + Sbjct: 90 TG--WVVHAATSDLPYLEQ-LRLRPAQLFDTELAGRFLGFH--RVNLAAMVEYYLGVRLR 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFLM 188 K DWS + E L YAA DV +L L +L + + + C++L Sbjct: 145 KNHGGEDWSRRPIPSEWLDYAALDVEYLLPLADAMRSELTQQSPKDEWVAEECDYLT 201 >gi|302415657|ref|XP_003005660.1| 3'-5' exonuclease domain-containing protein [Verticillium albo-atrum VaMs.102] gi|261355076|gb|EEY17504.1| 3'-5' exonuclease domain-containing protein [Verticillium albo-atrum VaMs.102] Length = 894 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 10/204 (4%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +EG + + IAVD E L ++Q+S D + + + Sbjct: 271 VDTYEGVLEMLGELKKAKEIAVDLEHHDTRTYAGLLSLMQISTRDQDWIVDTLKPWRHQL 330 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + + K K+FH D+ L G+ + +F T A+ + Q L L Sbjct: 331 EVLNEVFTNPKIVKVFHGAHMDMQWLQRDLGLYINGLFDTFFAAEILGY--PQRSLAYLL 388 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF-TEKLQRLGR----SD 178 K + + K Q +DW L +E YA SD +L + + E L R +D Sbjct: 389 KRFVDFDADKKYQMADWRIRPLPEEMFYYARSDTHYLLYIFDRIRNELLDASDRSKPETD 448 Query: 179 LATSCCNFLMDRAELDLLGWENVD 202 + L EL L +E +D Sbjct: 449 IIQQ---VLQKSKELSLSRYEGLD 469 >gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii] gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii] Length = 512 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 6/172 (3%) Query: 11 IPA----ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 +PA R IAVD E + +C++Q+S + + P L Sbjct: 230 LPALETMAAKLRASSEIAVDLENHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVL 289 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K+ H DI L FG+ V +F T A+R+ R + GL L+ Sbjct: 290 RSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDTGQAARVLRM--ERFGLAFLLQTF 347 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + K Q +DW LS E L+YA D +L + + L+ ++ Sbjct: 348 CEVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYVYDKMKGLLRDAETTE 399 >gi|262372600|ref|ZP_06065879.1| ribonuclease D [Acinetobacter junii SH205] gi|262312625|gb|EEY93710.1| ribonuclease D [Acinetobacter junii SH205] Length = 380 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 7/196 (3%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + D+ + A+DTE + + +L + Q++ D + A Sbjct: 1 MFQFIQQQKDLAVLLNQMEHCSTYALDTEFIKVDTLYPKLGVCQINVNDQVSLLD--GAA 58 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHG 118 + + ++ IFH DI ++++ + + VF T++A + Q Sbjct: 59 LDLSDFWRKVFEAQQ--NIFHACGEDIDLIYHYADQKPLKNVFDTQVAMAFL-GHGLQVS 115 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 ++ LK L I+I K Q SDW A LS EQ+ YAA+DV++L+ L + LQ G Sbjct: 116 YQNALKTCLNIDIDKDQTRSDWLARPLSQEQMSYAANDVLYLNKLAERLKFDLQTKGLYS 175 Query: 179 LATSCCNFLMDRAELD 194 C L L+ Sbjct: 176 YVLEDCQNLTKEIALE 191 >gi|283458265|ref|YP_003362884.1| ribonuclease D [Rothia mucilaginosa DY-18] gi|283134299|dbj|BAI65064.1| ribonuclease D [Rothia mucilaginosa DY-18] Length = 449 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 76/189 (40%), Gaps = 9/189 (4%) Query: 2 TTIRVHEGDI--PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 T+ E + AE A +AVDTE + R +VQL D I A Sbjct: 64 PTLITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGSRAFLVQLKREDQLYLIDPEAF- 122 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 K+ + L D E + H D L G+R +F T++ +RL + L Sbjct: 123 -KDLRIINDALADA--EWVIHAAIQDFPSL-DMLGMRPNRLFDTELGARLAG--LERVNL 176 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ELLG ++K DWS L + L YA DV L LR + L++ G+ Sbjct: 177 GATVEELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQY 236 Query: 180 ATSCCNFLM 188 A +L Sbjct: 237 ALEEFEYLC 245 >gi|71065355|ref|YP_264082.1| putative ribonuclease D [Psychrobacter arcticus 273-4] gi|71038340|gb|AAZ18648.1| putative ribonuclease D [Psychrobacter arcticus 273-4] Length = 432 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 68/172 (39%), Gaps = 6/172 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A +A+DTE + RL +VQL+ G+ + Q L L+ Sbjct: 65 ALATCGRVALDTEFIKRDTYYPRLALVQLNTGNHVYLLDAP---QLQLSELWQALIKVDV 121 Query: 76 EKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 I+H D+ + + G +F T+IA Q G + L E L ++I K Sbjct: 122 A-IWHACGEDLGIFYLLSGCPPLTNIFDTQIALSYLTGQL-QMGYQQALDEQLDMHIDKE 179 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 Q SDW LSDEQ QYA DV L AL L L+ G C Sbjct: 180 QSQSDWLQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQGLYGYVWEDCRL 231 >gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 906 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 2/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + AVD E + C++Q+S + + NL + D ++ Sbjct: 282 LKSATEFAVDLEHNHYRSFQGLTCLMQISTRTEDFIVDTLKLRNCLGENLREVFQDPTKK 341 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L FG+ V +F T ASR+ +++ L+ L+ G+ +K Q Sbjct: 342 KVMHGAGRDIIWLQRDFGIYVCNLFDTGQASRIL--QMDRNSLEHLLQYFCGVTANKEYQ 399 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 S+DW L DE +YA D +L + +L Sbjct: 400 SADWRLRPLPDEMTKYAREDTHYLLYIYDLMRLRLVNE 437 >gi|322815315|gb|EFZ23992.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi] Length = 713 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%) Query: 10 DIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A + IAVD E + C++Q+S + I + L Sbjct: 221 DLEEVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTRSEDILID-CLKLRSLMHLLAP 279 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + ++ K+ H R DI L FG+ + F T IA +T HGL + Sbjct: 280 VFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIA---LQTLHMPHGLAFAVDHFCQ 336 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179 + + K Q++DW + E + YA D L + + L GR+ + Sbjct: 337 VKLDKKYQTADWRIRPIPAEMVTYARQDTHFLLYVYDRLKTLLLNSEGRASI 388 >gi|296117768|ref|ZP_06836352.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306] gi|295969499|gb|EFG82740.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306] Length = 411 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 4/176 (2%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 A A+ IA+DTE DR ++QL D + ++ + + ++ +V Sbjct: 25 AARILAQGSGPIAIDTERASSFRYDDRAFLIQLRRADTPIFLVAPEGIRDDVREVLAPVV 84 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + ++ + H D+ L G+ +F T++A RL L +E LGI + Sbjct: 85 NGEK-WVVHAAVTDLTSL-AWLGLYPGSLFDTEVAGRLLGIQNP--NLASVTEEFLGIEL 140 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 K ++DWS LS QL YAA DV L L + +L++ +++ A + Sbjct: 141 DKGYGATDWSRFPLSKAQLIYAALDVDTLLELADEMAYELEQEDKTEWAQEEFAVI 196 >gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens] Length = 529 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L +E L YA D +L + + ++ G Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459 >gi|262202194|ref|YP_003273402.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247] gi|262085541|gb|ACY21509.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247] Length = 447 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 7/170 (4%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +AVDTE R ++Q+ G GT + I AP + + E + Sbjct: 69 GPVAVDTERASGYRYSQRAYLIQIRRRGAGTFLLDPIDEPDALAPVIDAL---RGPEWVL 125 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L G ++ T++A RL + L + E LG+ + K ++D Sbjct: 126 HAADQDLPCL-RELGFVCAELYDTELAGRLLG--LAKVNLAAMVAEFLGLGLRKGHGAAD 182 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 WS L D+ L YAA DV L LR L G+ A ++++ Sbjct: 183 WSRRPLPDDWLNYAALDVEVLVELRDAMDAALAAAGKDRWAREEFAYVLN 232 >gi|310792006|gb|EFQ27533.1| 3'-5' exonuclease [Glomerella graminicola M1.001] Length = 882 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 2/168 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +EG + + + IAVD E ++Q+S + + + ++ Sbjct: 224 VDTYEGVLEMLEDLKKANEIAVDLEHHDFRTYVGLTSLMQISTREKDWIVDTLKPWREQL 283 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D K+FH D+ L G+ V +F T +A + Q L L Sbjct: 284 QVLNEVFADPSIIKVFHGAFMDMVWLQRDLGLYVNGLFDTGMACEVLHY--PQKSLAFLL 341 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 K+ + + K Q +DW LS+E L YA SD +L + + +L Sbjct: 342 KKFVNFDADKKYQLADWRVRPLSEEMLYYARSDTHYLLYIYDKMRNEL 389 >gi|126328718|ref|XP_001364197.1| PREDICTED: similar to exosome component 10, isoform 1 [Monodelphis domestica] Length = 861 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 3/149 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 VD E C++Q+S II + + L D K+FH Sbjct: 286 FGVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDLYILNESFTDPSIVKVFHGA 344 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+R+ +H L LK + +K Q +DW Sbjct: 345 DMDIEWLQKDFGLYVVNMFDTHQAARILNLG--RHSLDHLLKLYCNVESNKQYQLADWRI 402 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L +E YA D +L + + L Sbjct: 403 RPLPEEMFNYARHDTHYLLYIYDKMRSDL 431 >gi|237835553|ref|XP_002367074.1| exosome component 10, putative [Toxoplasma gondii ME49] gi|211964738|gb|EEA99933.1| exosome component 10, putative [Toxoplasma gondii ME49] Length = 1353 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 2/162 (1%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 ++ E ++ +A+D E R C++QLS + I A + L + Sbjct: 472 ELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYIIDPFALF-DHLHVLNTI 530 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + K KIFH DI L F V V +F T +A+R L + L+ + Sbjct: 531 TANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPGGA-SLANLLQTYCHV 589 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +K Q +DW L+ E YA SD +L + +L Sbjct: 590 EANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQL 631 >gi|221485391|gb|EEE23672.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma gondii GT1] Length = 1353 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 2/162 (1%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 ++ E ++ +A+D E R C++QLS + I A + L + Sbjct: 472 ELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYIIDPFALF-DHLHVLNTI 530 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + K KIFH DI L F V V +F T +A+R L + L+ + Sbjct: 531 TANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPGGA-SLANLLQTYCHV 589 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +K Q +DW L+ E YA SD +L + +L Sbjct: 590 EANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQL 631 >gi|255730563|ref|XP_002550206.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240132163|gb|EER31721.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 786 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 3/161 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + + IAVD E +C++Q+S D I +A + L + + Sbjct: 248 LKKSEEIAVDLEHHDFRTYYGIVCLMQISNRDQDWIIDTLAL-RDELTELNEVFTNPNIV 306 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ + +F T ASR ++ L L+ SK Q Sbjct: 307 KVFHGAFMDIIWLQRDLGLYIVSLFDTYHASRALG--LSRFSLAYLLEHYAQFKTSKKYQ 364 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DW LS L YA SD L + Q KL + Sbjct: 365 LADWRIRPLSSPMLAYARSDTHFLLYIYDQLKNKLIDSDKL 405 >gi|221506253|gb|EEE31888.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma gondii VEG] Length = 1353 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 2/162 (1%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 ++ E ++ +A+D E R C++QLS + I A + L + Sbjct: 472 ELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYIIDPFALF-DHLHVLNTI 530 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + K KIFH DI L F V V +F T +A+R L + L+ + Sbjct: 531 TANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPGGA-SLANLLQTYCHV 589 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +K Q +DW L+ E YA SD +L + +L Sbjct: 590 EANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQL 631 >gi|293334443|ref|NP_001170525.1| hypothetical protein LOC100384536 [Zea mays] gi|238005848|gb|ACR33959.1| unknown [Zea mays] Length = 666 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 2/171 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 ++ H+G + V AVD E + C++Q+S + + Sbjct: 154 VQDHKGLTELAKKLKSVTEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIYIG 213 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L D + K+ H DI L F + V +F T ASR+ ++ L+ L Sbjct: 214 LYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVL--QMERNSLEHLL 271 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 G+ K Q++DW + L DE ++YA D +L + ++LQR Sbjct: 272 LHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQRE 322 >gi|126328720|ref|XP_001364275.1| PREDICTED: similar to exosome component 10, isoform 2 [Monodelphis domestica] Length = 836 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 3/149 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 VD E C++Q+S II + + L D K+FH Sbjct: 286 FGVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDLYILNESFTDPSIVKVFHGA 344 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+R+ +H L LK + +K Q +DW Sbjct: 345 DMDIEWLQKDFGLYVVNMFDTHQAARILNLG--RHSLDHLLKLYCNVESNKQYQLADWRI 402 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L +E YA D +L + + L Sbjct: 403 RPLPEEMFNYARHDTHYLLYIYDKMRSDL 431 >gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) (ISS) [Ostreococcus tauri] gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) (ISS) [Ostreococcus tauri] Length = 701 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 4/180 (2%) Query: 4 IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + V D E A AVD E + C++Q+S + + +A Sbjct: 120 VVVDTEDALEELATHLEQCKEFAVDLEHHSYRSFKGFTCLMQVSTREKDFVVDVLALRSL 179 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L D K+ H D+ L FG+ V +F T A+R+ L Sbjct: 180 VRDALGKAFADPNTLKVMHGADNDVQWLQKDFGIFVSCLFDTGQAARVLE--LPSKALAY 237 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L+ GI +K Q +DW L+ E L YA D +L + + + L G + +A Sbjct: 238 LLQHYCGIKANKKFQLADWRVRPLTREMLDYARGDTHYLLYVYDELKKALAARGENSIAA 297 >gi|295394778|ref|ZP_06804993.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030] gi|294972374|gb|EFG48234.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030] Length = 385 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 8/180 (4%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLV 71 A A + +DTE + +R +VQL G G V I + ++ L Sbjct: 23 ATQLAHGHGPVGIDTERASGIRYGNRAFLVQLKREGAGIVLID--SEALPVLSSVNAALH 80 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 E I H D+ L G+R +F T++A+RL + GL +E++G+ + Sbjct: 81 --GVEWILHAATQDLGCLAEK-GMRPDALFDTELAARLLN--FERFGLASLTEEIMGVTL 135 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 +K + DWS L E L YAA DV L+ LR + ++L G+ + A + L+ A Sbjct: 136 AKEHSAVDWSTRPLPHEWLAYAALDVEVLNHLRTELADRLHAQGKWEYARQEFDHLLSFA 195 >gi|86740037|ref|YP_480437.1| 3'-5' exonuclease [Frankia sp. CcI3] gi|86566899|gb|ABD10708.1| 3'-5' exonuclease [Frankia sp. CcI3] Length = 427 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 12/174 (6%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDE--KR 75 + +A D E R +VQ+ G G++ + IA + ++ D Sbjct: 42 GIGPVAFDAERASGYRYSQRAYLVQIRRRGTGSLLLDPIALEDLS------VIQDAVGGV 95 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 E + H D+ L G+R +F T++A RL + GL ++ +LG + K Sbjct: 96 EWVLHAASQDLPCLS-ELGLRPSLLFDTELAGRLLGY--ERVGLGIMVERVLGYGLEKGH 152 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++DWS L + L+YAA DV L LR +L + + A ++ Sbjct: 153 SAADWSTRPLPEPWLRYAALDVELLVELRDALEAELIEQNKIEFARQEFAAIVA 206 >gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia] Length = 669 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 2/163 (1%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 E IAVD E + C++QLS I ++ L + + Sbjct: 211 EVDQNGFSEIAVDLEHNHSISYLGVTCLIQLSTRTQDYIIDPFPLWKQLGDMLSVVFTNP 270 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + K+FH D+ L FG+ + +F T AS+ Q+ + L E + K Sbjct: 271 RIVKVFHGADNDVQWLQRDFGLYIVNLFDTFQASK--ELLLMQNSFQFLLSEYCKKSTDK 328 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 Q++DW+ LSDE ++YA D +L + + + L++L + Sbjct: 329 TYQTADWTQRPLSDEMIKYAQIDTHYLLYIYDRMRQDLKKLNK 371 >gi|167527362|ref|XP_001748013.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773431|gb|EDQ87070.1| predicted protein [Monosiga brevicollis MX1] Length = 837 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + V +A+D E + C++QLS I +A + + L + D Sbjct: 282 LKSVSELAIDLEAHSYRTYQGFTCLMQLSTRSEDYLIDTLAL-RDDLKLLNVIFADPAIL 340 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L + + +F T A+R+ +H L L+ K Q Sbjct: 341 KVLHGADSDILWLQRDHSLYIVNMFDTGQATRVLN--FPRHSLAWLLQHYCNFKADKKYQ 398 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +DW LS+E L YA D L + + +L G Sbjct: 399 LADWRVRPLSEEMLHYARCDTHFLLYIYDRLHSELLAQG 437 >gi|260950129|ref|XP_002619361.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720] gi|238846933|gb|EEQ36397.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720] Length = 738 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 8/196 (4%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A R IA+D E C++Q+S + + +A + +L + + Sbjct: 234 ALRSSTEIAIDLEHHDYRSYYGITCLMQISNREQDWIVDTLAL-HDDLRDLNEIFANPAI 292 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ H DI L G+ + +F T AS+ + L L+ SK Sbjct: 293 LKVLHGANMDIIWLQRDLGLYIVSLFDTYHASKKLG--FPKFSLAYLLENFAHFKTSKKY 350 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDLATSCCNFLMDRAEL 193 Q +DW L+D +QYA +D L + Q KL G+ + R Sbjct: 351 QLADWRIRPLTDAMMQYARADTHFLLNIYDQLRNKLLNAGQGKVQEVLYESRKVASR-RF 409 Query: 194 DLLGW--ENVDIFSHS 207 + + + D + HS Sbjct: 410 EFNSFKQDQTDNWMHS 425 >gi|313242411|emb|CBY34559.1| unnamed protein product [Oikopleura dioica] Length = 420 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 3/152 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R +AVD E + C+VQ+S + +A + L + + K Sbjct: 272 LREESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMY-KLNEVFANPKIV 330 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KIFH R D+ L FGV V +F T A++ + L L+ I + K Q Sbjct: 331 KIFHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLD--LAKKSLDYLLQHYCKIRLDKRFQ 388 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 +DW + L+YA D +L + + Sbjct: 389 LADWRMRPIPPNMLRYARQDTHYLLYVYDRLR 420 >gi|294654453|ref|XP_456510.2| DEHA2A04334p [Debaryomyces hansenii CBS767] gi|199428893|emb|CAG84465.2| DEHA2A04334p [Debaryomyces hansenii] Length = 776 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 60/160 (37%), Gaps = 3/160 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 IA+D E +C++Q+S D II + + +L + + Sbjct: 246 LLSEQSEIAIDLEHHDYRSYYGIVCLMQISSRDQD-WIIDTLKLRDDLESLNKVFTNPDI 304 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L G+ + +F T AS+ + L L+ SK Sbjct: 305 VKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKKLG--FPKFSLAYLLETFANFKTSKKY 362 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q +DW LS L YA SD L + Q KL G Sbjct: 363 QLADWRIRPLSPPMLAYARSDTHFLLNIYDQLRNKLIDAG 402 >gi|328776419|ref|XP_003249163.1| PREDICTED: exosome component 10-like [Apis mellifera] Length = 1271 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 9/170 (5%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + I++ D+ + IAVD E + C++Q+S D I ++ + Sbjct: 266 SDIKLLINDL------KQYKEIAVDLEHHSYRSFQGITCLMQISTEDKDYLIDTLSL-RS 318 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + K+FH DI L + V +F T A++ L Sbjct: 319 ELHELNEIFTKPTILKVFHGADLDIQWLQRDLSLYVVNMFDTHQAAKQLN--LPYLSLAY 376 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 LK ++ K Q +DW L ++ ++YA D +L ++ L Sbjct: 377 LLKHYCNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYIKDMLKNAL 426 >gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga] gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva] Length = 996 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 6/181 (3%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I +E D + + + +++D E R +C+VQLS + I K Sbjct: 474 IIDNEADFNSMLDKLKNIRVLSLDVEHHDTETYRGFICLVQLSTPEENYIIDPFKIFGKM 533 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L + D K KI H D+ L F + V +F T+ A+++ + L Sbjct: 534 N-KLNRLTTDPKILKIMHGASNDVVWLQRDFNIFVVNLFDTREAAKVLN--LAEQSLAKL 590 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDLA 180 +++ I ++K Q SDWS L E L YA D +L L +++ + GR + Sbjct: 591 IQKYFNIKLNKRFQLSDWSKRPLDAEMLDYACCDSHYLIPLYSALKDEILSKEDGRVKII 650 Query: 181 T 181 Sbjct: 651 Q 651 >gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL Brener] gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi] Length = 768 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%) Query: 10 DIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A + IAVD E + C++Q+S + I + + L Sbjct: 276 DLEDVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTRSEDILID-CLKLRSSMHLLAP 334 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + ++ K+ H R DI L FG+ + F T IA +T HGL + Sbjct: 335 VFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIA---LQTLHMPHGLAFAVDHFCQ 391 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179 + + K Q++DW + E YA D L + + L GR+ + Sbjct: 392 VKLDKKYQTADWRIRPIPAEMATYARQDTHFLLYVYDRLKTLLLNSEGRASI 443 >gi|158291195|ref|XP_312669.4| AGAP002300-PA [Anopheles gambiae str. PEST] gi|157018260|gb|EAA07463.4| AGAP002300-PA [Anopheles gambiae str. PEST] Length = 969 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 3/159 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + C++QLS + +A + L + D K+ Sbjct: 284 LQAAKEIAIDLEHHSYRSYQGFTCLMQLSTRTKDYIVDALAL-RDELHVLNEVFTDPKKL 342 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ + +F T A+R+ ++ GL+ LK I+ KA Q Sbjct: 343 KVLHGSVSDIEWLQRDLGLYLVNMFDTGEAARVL--QFSRIGLQFLLKHYCNIDTDKAFQ 400 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +DW + + ++YA D +L + + +L G Sbjct: 401 LADWRIRPIPENFIEYARKDTHYLLYIYDRMRNELLEKG 439 >gi|193697404|ref|XP_001951643.1| PREDICTED: exosome component 10-like [Acyrthosiphon pisum] Length = 739 Score = 155 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 3/155 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 V+ +A+D E + C++Q+S + II + L + + K+F Sbjct: 228 VNELAIDLEAHSYRTYQGFTCLMQISTRNAD-YIIDTLYLRDKLHVLNEIFTNPAVVKVF 286 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H DI L G+ V +F T A+++ ++ GL+ LK ++ K Q D Sbjct: 287 HGADSDIPWLQRDLGLYVVNMFDTYQAAKILN--FSRKGLEFLLKHYCNVDADKTFQLYD 344 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 W LS E + YA D +L + + L + Sbjct: 345 WRTRPLSTEAIFYARCDTHYLLYVYDMIKKDLMAM 379 >gi|84496254|ref|ZP_00995108.1| putative ribonuclease D [Janibacter sp. HTCC2649] gi|84383022|gb|EAP98903.1| putative ribonuclease D [Janibacter sp. HTCC2649] Length = 428 Score = 155 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 8/169 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +AVD E R ++Q+ G GT I IA + L + + E I H Sbjct: 67 PVAVDAERASGYRYGQRAYLIQVRREGSGTWLIDPIAC--PDLSPLNDAIG--RAEWILH 122 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+A L G+R +F T++ +RL + GL ++ LG+ ++K + DW Sbjct: 123 AATQDLACL-AEVGLRPVQLFDTELGARLLG--LPRVGLAAVVEHYLGLALAKEHSAVDW 179 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 S L + L+YAA DV L LR L R +S+ A L+ Sbjct: 180 STRPLPEPWLRYAALDVEVLTELRNLMGVDLARQDKSEWARQEFEALLT 228 >gi|254566215|ref|XP_002490218.1| Exonuclease component of the nuclear exosome [Pichia pastoris GS115] gi|238030014|emb|CAY67937.1| Exonuclease component of the nuclear exosome [Pichia pastoris GS115] gi|328350615|emb|CCA37015.1| exosome complex exonuclease RRP6 [Pichia pastoris CBS 7435] Length = 717 Score = 155 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 63/161 (39%), Gaps = 3/161 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 D IAVD E L +C++Q+S + + + K P L + D Sbjct: 228 LSKADVIAVDLEHHDLRTYYGLVCLMQISTRNQDYIVDTLKLRFKLQP-LNKVFTDPSIV 286 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ V +F T AS+L +H L L+ SK Q Sbjct: 287 KVFHGAFMDIIWLQRDLGLYVVSLFDTFHASKLLG--FPKHSLAYLLETYAKFKTSKKYQ 344 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DW L+ L YA SD L + Q L G+ Sbjct: 345 LADWRVRPLTKPLLAYARSDTHFLLYIFDQLNNMLIESGKL 385 >gi|209881893|ref|XP_002142384.1| exosome component 10 [Cryptosporidium muris RN66] gi|209557990|gb|EEA08035.1| exosome component 10, putative [Cryptosporidium muris RN66] Length = 1029 Score = 155 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 2/154 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +A+D E + R +C++Q+S I + L + + + K+FH Sbjct: 400 VLAIDLEHHSMQTFRGFVCLIQMSTRTCDYIIDPFPLFE-ELSRLNELTTNPRILKLFHG 458 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 +DI L F V V +F T A+R+ T + L + L + +K Q SDW Sbjct: 459 SDYDIIWLQRDFSVYVVNMFDTGQAARVLNTPG-GYSLGNLLNLYCSVEANKQYQLSDWR 517 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L ++YA SD +L + +L LG Sbjct: 518 ERPLPQHLIEYARSDTHYLPYIYDIMKNQLLLLG 551 >gi|317125038|ref|YP_004099150.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043] gi|315589126|gb|ADU48423.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043] Length = 418 Score = 155 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 8/172 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 I VD E R +VQ+ G GTV + +A + L + D E Sbjct: 47 GSGPIGVDAERASGYRYGQRAYLVQVRRQGAGTVLLDPVAV--PDLSPLDRAIGDA--EW 102 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ V G++ R +F T++ RL + GL ++ LG+ ++K + Sbjct: 103 ILHAATHDL-VCLAEVGLQPRVLFDTELGGRLAG--LPRVGLGAMVEHYLGLQLAKEHSA 159 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 DWS L + L+YAA DV L LR L+R G++ A L+ Sbjct: 160 VDWSIRPLPEPWLRYAALDVEVLVDLRHAVHADLERQGKAGWAAEEFQSLLQ 211 >gi|223939512|ref|ZP_03631388.1| 3'-5' exonuclease [bacterium Ellin514] gi|223891784|gb|EEF58269.1| 3'-5' exonuclease [bacterium Ellin514] Length = 372 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 6/168 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A+DTE L +++C++Q++ G I ++ + L+ E I Sbjct: 34 TPWVALDTEADSLHAYPEKVCLLQITTPLGDELIDPLSGINLD--PLLDTFG--GHELIM 89 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H +D+ +L + +F T +ASRL Q GL + LG+ + K Q +D Sbjct: 90 HGSDYDLRLLRKHHAFVPKAIFDTMLASRLLGH--TQFGLVHLVAHYLGVTLEKGSQKAD 147 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 W+ L+ YA +D +L L + L+ GR C L Sbjct: 148 WAKRPLTPRMEAYARNDTHYLKHLADRLKSDLEVKGRLGWHQELCARL 195 >gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia] Length = 676 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 6/180 (3%) Query: 1 MTTIRVHEGDI----PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 M T H G++ E IAVD E + C++QLS I Sbjct: 194 MITNADHLGELVLKIQQEVDQNGFSEIAVDLEHNHQISYLGITCLIQLSTRSQDYIIDPF 253 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 ++ L + + K K+FH D+ L FG+ + +F T AS+ Q Sbjct: 254 PLWKQLGDMLSVIFANPKIVKVFHGAENDVQWLQRDFGLYIVNLFDTFHASK--ELQLMQ 311 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + + L E + K Q++DW+ L DE ++YA D +L + + + L++L + Sbjct: 312 NSFQFLLSEYCKKSTDKTYQTADWTQRPLPDEMIKYAQIDTHYLLYIYDRMRQDLKKLNK 371 >gi|297626438|ref|YP_003688201.1| ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922203|emb|CBL56771.1| Ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 445 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 11/182 (6%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------NAPNLV 67 E A +A+DTE R ++Q D +I A Q + L Sbjct: 50 EALASGTGPVAIDTERAQSFRYTARAYLLQFRRTDSGTWLIDPQAFQPSDGSLADFSALR 109 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + E I H D+ L G+ +F T++A RL + L +++ Sbjct: 110 EAIA--SAEWIIHAATQDLPCLV-EIGLYPSRLFDTELAGRLLG--FPRVSLGTMIEQHF 164 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 G+++ K ++DWS L + + YAA DV L LR ++L G+ + A L Sbjct: 165 GVHLLKEHSAADWSRRPLPPDWIAYAALDVELLIELRNLVADELVAAGKKEWADEEFAHL 224 Query: 188 MD 189 +D Sbjct: 225 VD 226 >gi|311258442|ref|XP_003127631.1| PREDICTED: exosome component 10-like [Sus scrofa] Length = 759 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 57/142 (40%), Gaps = 3/142 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK + +K Q +DW Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCSVESNKQYQLADWRI 426 Query: 143 DDLSDEQLQYAASDVVHLHALR 164 L +E L YA D +L + Sbjct: 427 RPLPEEMLSYARDDTHYLLYIY 448 >gi|118372761|ref|XP_001019575.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89301342|gb|EAR99330.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 881 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 5/170 (2%) Query: 4 IRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + V + DI E + + +A+D E C++Q+S I+ + + K Sbjct: 245 VFVDKEDILDEMIESLKQCSEVAIDLEHHSYRSFNGITCLMQISSRTKD-YIVDVFSVWK 303 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + L + D+ K+ H DI L FG+ + +F T A+R + L Sbjct: 304 SLHKLNAVTTDKNIVKVLHGADMDIQWLQRDFGIYIVNLFDTGQAARTLSM--PSYALAY 361 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L+ + + K Q +DW L E + YA SD +L ++ +L Sbjct: 362 LLQSISKVPTDKKYQLADWRIRPLPREMISYARSDTHYLLSIYDNLRIQL 411 >gi|269956679|ref|YP_003326468.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894] gi|269305360|gb|ACZ30910.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894] Length = 420 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 16/188 (8%) Query: 10 DIPAECA------ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62 D PA A A +A D E +VQL G GT + +A Sbjct: 40 DSPAGLAKVVAAFAGGRGPVAADCERASGYRYGQSTFLVQLRREGAGTALLDPVA----- 94 Query: 63 APNLVGM-LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 P+L + E I H D+ L G+R VF T++A+RL + GL Sbjct: 95 LPDLSAIGAAVGDVEWILHAASQDLPGLAEH-GLRPASVFDTELAARLLG--LERVGLAA 151 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + + LG+ ++K + DWS L + L+YAA DV L +R E+L G+S+ A Sbjct: 152 VVADTLGLGLAKEHSAVDWSTRPLPVDWLRYAALDVEVLGEVRDVLAERLADAGKSEWAA 211 Query: 182 SCCNFLMD 189 + Sbjct: 212 QEFEAVRT 219 >gi|39973915|ref|XP_368348.1| hypothetical protein MGG_00896 [Magnaporthe oryzae 70-15] gi|145018155|gb|EDK02434.1| hypothetical protein MGG_00896 [Magnaporthe oryzae 70-15] Length = 854 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 2/171 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +EG + + IAVD E L ++Q+S + + + ++ Sbjct: 260 VDTYEGVLEMLEDLKQAKEIAVDLEHHDFRTYHGLLSLMQISTREKDWIVDTLKPWRQQL 319 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D K+FH DI L G+ V +F T A+ L L Sbjct: 320 EILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLFDTFHAAEALMY--PSKSLAYLL 377 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K+ + K Q++DW L +E L YA SD +L + +L R Sbjct: 378 KKFVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLYVYDMMRNELLRQ 428 >gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] Length = 583 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 5/195 (2%) Query: 6 VHEGDI-PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +H D+ P IAVDTET GL P +L ++QL+ D V +I + Sbjct: 12 LHPADLVPYMEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAEDLPVLVIDCFSFLPEGR 71 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDN 122 L+ ++ K+F +FD+ L + +F T +AS+L R Q LK Sbjct: 72 ELINAILSTSGVKVFQNAKFDLQFLM-ALDIFPPTLFDTMLASQLLRGSGGPVQSNLKAL 130 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + L ++ K +Q+S+W +L++ Q+ YAA D L LR ++ + +A Sbjct: 131 AQHYLNEDLDKEEQTSNW-QGELTESQILYAARDAEILLRLRKVMIPQILENHLTQIAEI 189 Query: 183 CCNFLMDRAELDLLG 197 + A L+ G Sbjct: 190 EFRCVKAMAHLEYRG 204 >gi|63054485|ref|NP_593004.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe 972h-] gi|6226742|sp|Q10146|RRP6_SCHPO RecName: Full=Exosome complex exonuclease rrp6; AltName: Full=Ribosomal RNA-processing protein 6 gi|159883898|emb|CAA93168.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe] Length = 777 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 7/183 (3%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 E + + IAVD E R +C++Q+S + I+ ++ Sbjct: 223 TESQLSDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKD-WIVDTLELREELEA 281 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L + + K+FH DI L FG+ V +F T A+++ HGL L++ Sbjct: 282 LNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLG--FEGHGLAFLLQK 339 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLGRSDLATS 182 + K Q +DW L E L+YA SD +L + +L + +L S Sbjct: 340 YCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLMQS 399 Query: 183 CCN 185 N Sbjct: 400 VFN 402 >gi|255327433|ref|ZP_05368506.1| ribonuclease D [Rothia mucilaginosa ATCC 25296] gi|255295501|gb|EET74845.1| ribonuclease D [Rothia mucilaginosa ATCC 25296] Length = 421 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 7/177 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 AE A +AVDTE + R +VQL D I A K+ + L Sbjct: 48 AAEQLAAASGPVAVDTERAQGIRYGSRAFLVQLKREDQLYLIDPEAF--KDLRIINDALA 105 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D E + H D L G+R +F T++ +RL + L ++ELLG + Sbjct: 106 DA--EWVIHAAIQDFPSL-DMLGMRPNRLFDTELGARLAG--LERVNLGAAVEELLGYKL 160 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 +K DWS L + L YA DV L LR + L++ G+ A +L Sbjct: 161 AKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDAMEDLLRQQGKLQYALEEFEYLC 217 >gi|321254177|ref|XP_003192989.1| exosome complex exonuclease RRP6 [Cryptococcus gattii WM276] gi|317459458|gb|ADV21202.1| Exosome complex exonuclease RRP6 (Ribosomal RNA processing protein 6), putative [Cryptococcus gattii WM276] Length = 851 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 3/156 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKR 75 + IAVD E + C++Q+S + + + + + D Sbjct: 168 LKQAKEIAVDLEHHDMRSYSGFTCLIQISTRENDWVVDTLSLRKEIQQDKFGDVFTDPTV 227 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L F + V +F T A + Q L L+ K Sbjct: 228 VKVFHGADSDIVWLQRDFEIFVVNLFDTYNACVVLGM--PQRSLSALLQHYCNFEADKRY 285 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 Q +DW L D L YA SD L + L Sbjct: 286 QRADWRIRPLPDGMLNYARSDTHFLLFIYDNLRNAL 321 >gi|269219399|ref|ZP_06163253.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332] gi|269211192|gb|EEZ77532.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332] Length = 411 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 74/184 (40%), Gaps = 9/184 (4%) Query: 10 DIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNL 66 DI +A A+DTE + R +VQ+ G GT I I + P L Sbjct: 24 DIDDAVSALGAGRGPFAIDTERAMGIRYSGRAYVVQIRREGAGTFLIDPIGIEDRLGP-L 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L I H D+ L G +F T++A L + L+ + E+ Sbjct: 83 AELLA--TDVWILHAADQDLPCL-RELGFNPPEIFDTEVAGILLG--FERISLQAEVAEV 137 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 LG ++K +DWS L+ E YAA DV L LR + T L+ GR + C Sbjct: 138 LGYGLAKEHSMADWSERPLAPELRAYAALDVELLIELRERLTAMLRAAGRLEWLHEECEE 197 Query: 187 LMDR 190 + R Sbjct: 198 IRLR 201 >gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio] Length = 899 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 61/168 (36%), Gaps = 3/168 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I E + AVD E C++Q+S + II + Sbjct: 289 ISTLEDLVALNEKLAKTTEFAVDLEHHSYRSFLGITCLMQISTREEDF-IIDTLELRSEM 347 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L D K+FH DI L FG+ V +F T A+R N L L Sbjct: 348 YILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRN--SLDHLL 405 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 K ++ K Q +DW L DE L+YA +D +L + + L Sbjct: 406 KVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYVYDRVRADL 453 >gi|308177768|ref|YP_003917174.1| ribonuclease D [Arthrobacter arilaitensis Re117] gi|307745231|emb|CBT76203.1| putative ribonuclease D [Arthrobacter arilaitensis Re117] Length = 416 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 11/184 (5%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 +AVDTE R ++Q+ G GT + + L V+ Sbjct: 49 ALEAGTGDLAVDTERASGFRYGQRAFLLQIRREGSGTWLVDP--ETLDDLSPLRT-FVNA 105 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + I H D+ L + G+ +F T++A RL + L + ELLG+ ++K Sbjct: 106 QP-WILHAATQDLPCL-HELGMSPTALFDTELAGRLAG--FPRVSLGTMVGELLGLQLAK 161 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF---LMDR 190 + DWS L + L YAA DV L LR T L+ G+ + A L D Sbjct: 162 EHSAVDWSTRPLPESWLNYAALDVEVLEELRQAITATLEEQGKLEFAIQEFEHERNLPDP 221 Query: 191 AELD 194 D Sbjct: 222 VPAD 225 >gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299] gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299] Length = 332 Score = 154 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 2/162 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + +AVD E + C++Q+S + + L ++ D + Sbjct: 51 LDKSNEMAVDLEHHSYRSFQGFTCVIQVSTRRMDFVVDALELRGLIRDALGPVMADPRVM 110 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH D+ L FG+ V +F T A+R+ GL L + K Q Sbjct: 111 KVFHGADMDVQWLQRDFGIYVVGMFDTGQAARVLE--LPSKGLAYLLDHYCSVKADKRFQ 168 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +DW LS+E + YA D HL + + ++L +GR D Sbjct: 169 LADWRVRPLSEEMISYARGDTHHLLYVYDRLRQQLDAVGRGD 210 >gi|17531757|ref|NP_496283.1| Cell-death-Related Nuclease family member (crn-3) [Caenorhabditis elegans] gi|3874231|emb|CAA90108.1| C. elegans protein C14A4.4a, confirmed by transcript evidence [Caenorhabditis elegans] gi|31747255|gb|AAP57299.1| cell death-related nuclease 3 [Caenorhabditis elegans] Length = 876 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 3/161 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 V AVD E + C++Q+S D I L + + K+F Sbjct: 297 VKEFAVDLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVG-MLNEPFANPRILKVF 355 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H D+ L +GV V +F T +A + + + L + + K Q +D Sbjct: 356 HGSDSDVLWLQRDYGVHVVNLFDTYVAMKKLKY--PKFSLAYLTLRFADVVLDKQYQLAD 413 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 W A L + + YA D +L E+L + DLA Sbjct: 414 WRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQDTKDLA 454 >gi|262375228|ref|ZP_06068461.1| ribonuclease D [Acinetobacter lwoffii SH145] gi|262309482|gb|EEY90612.1| ribonuclease D [Acinetobacter lwoffii SH145] Length = 380 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 10/212 (4%) Query: 1 MTTIRVHEGDIPAECAARYVDAI-AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M H+ D+ +++ +DTE + + +L + Q++ + + Sbjct: 1 MFQFIQHQNDLTHVLKLMDQNSVYGLDTEFIKVDTLWPKLGVFQINVDNKVYLLD--GTT 58 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHG 118 L + ++ IFH DI ++++ + + VF T++ + Q Sbjct: 59 LDLTEFLNKIFNAQQ--NIFHACSEDIDLIYHYTQKKSLSNVFDTQVGMSFL-GHGLQVS 115 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 ++ LK++L ++I K Q SDW A LS EQL YAA+DV +L L + + L D Sbjct: 116 YQNALKQMLEVDIEKDQTRSDWLARPLSSEQLLYAANDVHYLVQLSEKIKQDLDSKDLLD 175 Query: 179 LATSCCNFLMDRAELD---LLGWENVDIFSHS 207 A C FL D L +++V + HS Sbjct: 176 FALQDCRFLTQEIGEDTPTALLYQDVGNYRHS 207 >gi|38233981|ref|NP_939748.1| putative ribonuclease [Corynebacterium diphtheriae NCTC 13129] gi|38200243|emb|CAE49927.1| Putative ribonuclease [Corynebacterium diphtheriae] Length = 407 Score = 153 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 9/195 (4%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 A ++ A+DTE G DR ++Q+ G GTV I A + L ++ Sbjct: 25 AAYQLSQGTGPFAIDTERAGAYRYDDRAYLLQIRREGSGTVLIDPEANRRLVTSVLGKVI 84 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 ++ I H D+ L G +F T++A RL + L L+E L + Sbjct: 85 NNQP--WIIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAG--LPRVNLASMLEERLEVT 139 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + KA + DWS L L YAA DV L L L+ G+ + C L++ Sbjct: 140 LKKAHGAEDWSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGKLEWHKQECAHLINT 199 Query: 191 AELDL---LGWENVD 202 + L W+++ Sbjct: 200 SSHGLDTQRSWQDIK 214 >gi|330813924|ref|YP_004358163.1| ribonuclease D [Candidatus Pelagibacter sp. IMCC9063] gi|327487019|gb|AEA81424.1| ribonuclease D [Candidatus Pelagibacter sp. IMCC9063] Length = 352 Score = 153 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 76/185 (41%), Gaps = 5/185 (2%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I D+ C A + +DTE L + + G I + + Sbjct: 2 IIQSNQDLEKFCKLASRKKVLFIDTEFDRRNTYYSELSFISVYDGTKFWLIDCLTDIKVE 61 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 A L +L ++K K+ H + D+ + + + + +F T+ A++ + + Sbjct: 62 A--LSKVLNNKKITKVLHGSQQDLEIFKH-LQLPLNSLFDTQTAAQFC-GFEQPISYANA 117 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + ++ +++ K Q+SDW ++ + ++Y +DV +L L F+++L++ Sbjct: 118 VLKICKVSLDKQLQNSDWLKRPVNKKTIEYLKNDVKYLKPLYAFFSKELKKNKNFSYFKE 177 Query: 183 CCNFL 187 + + Sbjct: 178 EMSII 182 >gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum] Length = 892 Score = 153 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 3/156 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 V AVD E C++Q+S + I + L + K+F Sbjct: 290 VSKFAVDLEHHSYRSFLGLTCLMQISTDEKDYIIDPFPIWN-DMQILNEPFTNPNILKVF 348 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H +D+ L FG+ V +F T A + ++ L ++ + + + K Q +D Sbjct: 349 HGSEYDVQWLQRDFGIYVVGMFDTFCAMHVLN--FAKYSLAHLVQSICNVTLDKELQKAD 406 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 W L+ ++YA SD +L ++L G Sbjct: 407 WRVRPLTTAHIEYARSDTHYLLYCYDTLRQRLINEG 442 >gi|294650367|ref|ZP_06727734.1| ribonuclease D [Acinetobacter haemolyticus ATCC 19194] gi|292823780|gb|EFF82616.1| ribonuclease D [Acinetobacter haemolyticus ATCC 19194] Length = 380 Score = 153 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 7/196 (3%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + D+ + A+DTE + + +L + Q+ DG V ++ Sbjct: 1 MFQFIQQQEDLAVLLHKMEHCSTYALDTEFIKVDTLYPKLGVCQI-NLDGQVALLD--GT 57 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHG 118 + + + + + + IFH DI ++++ + +F T++A Q Sbjct: 58 VLDLTHFWDKVFNAQ-QNIFHACSEDIDLIYHYADQKPLHNIFDTQVAMAFLGNGL-QVS 115 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 ++ LK L I I K Q SDW A L+ +Q+ YAA+DV++L L LQ G Sbjct: 116 YQNALKTYLDIEIEKDQTRSDWLARPLTPQQISYAANDVLYLPRLAEALKRDLQSKGIYH 175 Query: 179 LATSCCNFLMDRAELD 194 C L D Sbjct: 176 YVLEDCQNLTKEIGTD 191 >gi|310823888|ref|YP_003956246.1| ribonuclease d [Stigmatella aurantiaca DW4/3-1] gi|309396960|gb|ADO74419.1| ribonuclease D [Stigmatella aurantiaca DW4/3-1] Length = 389 Score = 153 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 4/179 (2%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A +AVD E + R RLC +Q++ +A G +A L ++ D Sbjct: 20 AARTLATAGELAVDLEADSMHAFRARLCFLQVATPTDIFLFDTLAPGV-DASLLAPLMAD 78 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +R K FH + D+ L G+RVR +F T A+ L + GL D +E LG+ + Sbjct: 79 PERTKYFHAAQGDLQFL-AEAGIRVRGLFDTHRAATLLG--WPKVGLADIARERLGVELP 135 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K Q SD+S L E +Y A+DV +L L Q E + G + C+ + + A Sbjct: 136 KEHQQSDFSLRPLPPEMREYIANDVRYLCELGRQVREACRTAGILEEVLLDCDRMCEEA 194 >gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens] gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens] Length = 535 Score = 153 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 4/170 (2%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + ++ + V AVD E + +C++Q+S D + +A + Sbjct: 240 NVITEKDELKDLLETLKSVTEFAVDLEHHSYRSYQGFVCLMQISTRDADYIVDTLALRSE 299 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + D K KI H DI L F + V +F T A+RL + L Sbjct: 300 LW-TLNEVFSDPKIIKILHGADSDIIWLQRDFAIYVVNMFDTGQAARLL--QFPRFSLSY 356 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L + + +K Q +DW L E +QYA D +L + T +L Sbjct: 357 LLLKYCNVTANKGLQLADWRIRPLPQEMVQYAREDTHYLLYIFDVLTNEL 406 >gi|241948847|ref|XP_002417146.1| exosome complex exonuclease RRP6, putative; ribsomal RNA processing protein 6, putative [Candida dubliniensis CD36] gi|223640484|emb|CAX44736.1| exosome complex exonuclease RRP6, putative [Candida dubliniensis CD36] Length = 776 Score = 153 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 60/161 (37%), Gaps = 3/161 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + I+ + + L + D Sbjct: 245 LKKSTEIAVDLEHHDYRSYYGIVCLMQISSREQD-WIVDTLVLRDDLTVLNEVFADPNIV 303 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ V +F T ASR + L L+ SK Q Sbjct: 304 KVFHGAFMDIIWLQRDLGLYVVSLFDTYHASRALG--FPRFSLAYLLEVYAHFKTSKQYQ 361 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DW LS L YA SD L + Q KL + Sbjct: 362 LADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDANKL 402 >gi|115372643|ref|ZP_01459950.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1] gi|115370364|gb|EAU69292.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1] Length = 379 Score = 153 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 4/179 (2%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A +AVD E + R RLC +Q++ +A G +A L ++ D Sbjct: 10 AARTLATAGELAVDLEADSMHAFRARLCFLQVATPTDIFLFDTLAPGV-DASLLAPLMAD 68 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +R K FH + D+ L G+RVR +F T A+ L + GL D +E LG+ + Sbjct: 69 PERTKYFHAAQGDLQFL-AEAGIRVRGLFDTHRAATLLG--WPKVGLADIARERLGVELP 125 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K Q SD+S L E +Y A+DV +L L Q E + G + C+ + + A Sbjct: 126 KEHQQSDFSLRPLPPEMREYIANDVRYLCELGRQVREACRTAGILEEVLLDCDRMCEEA 184 >gi|50954730|ref|YP_062018.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951212|gb|AAT88913.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07] Length = 398 Score = 153 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 8/178 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A +AVD E R ++Q+ G GT A G+ + N + D Sbjct: 18 EVIAAGDGPVAVDAERASGFRYSQRAYLIQVFRRGAGTFLFDPPAIGRFDELN-AAISGD 76 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 E + H D+ L G+ +F T++A+RL + GL ++ELLGI+++ Sbjct: 77 ---EWVLHAATQDLTCL-REVGLDPVTIFDTELAARLLGM--PRVGLGTVVEELLGIHLT 130 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 K ++DWS L L+YAA DV L LR L ++++A + R Sbjct: 131 KEHSAADWSTRPLPGPWLEYAALDVELLPDLRDAVAGLLDAADKTEIARQEFEDELTR 188 >gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis] Length = 550 Score = 153 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 3/168 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I E + AVD E C++Q+S + II + Sbjct: 258 ITTLEELAALNEKLCQLSEFAVDLEHHSYRSFLGITCLMQISTREEDF-IIDTLELRSEM 316 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L D K+FH DI L FG+ V +F T ASR +H L L Sbjct: 317 YILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYVVRLFDTHQASRALN--LARHSLDHLL 374 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K Q +DW L +E +QYA +D +L + +L Sbjct: 375 THFCNVASDKRYQLADWRIRPLPEEMVQYARADTHYLLYIYDCVRAQL 422 >gi|170035413|ref|XP_001845564.1| exosome component 10 [Culex quinquefasciatus] gi|167877380|gb|EDS40763.1| exosome component 10 [Culex quinquefasciatus] Length = 796 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R +A+D E + C++Q+S I +A ++ L + D K Sbjct: 277 LRQAKELAIDLEHHSYRTFQGFTCLMQISTRTKDYIIDTLAL-REELHVLNEVFTDTKVV 335 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L + V +F T A+++ ++ GL+ LK I KA Q Sbjct: 336 KVLHGSISDIEWLQRDLALYVVNMFDTGEAAKVLE--FSRIGLQFLLKHYCNIETDKAYQ 393 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +DW + ++YA D +L + + +L G Sbjct: 394 LADWRIRPIPKNFIEYARKDTHYLLYIYDRMRNELIEKG 432 >gi|301119505|ref|XP_002907480.1| exosome complex exonuclease RRP6-like protein [Phytophthora infestans T30-4] gi|262105992|gb|EEY64044.1| exosome complex exonuclease RRP6-like protein [Phytophthora infestans T30-4] Length = 1465 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 3/161 (1%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 A IAVD E C++Q+S + +A K L + D + Sbjct: 260 LTAAEARVIAVDLEHHSYRSYMGLTCLMQISTAQEDFLVDTLALRGKLQ-TLNQVFCDPE 318 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 + K+ H DI L G+ + +F T A+RL + + L LK I+ K Sbjct: 319 KVKVLHGSDMDILWLQRDLGLYIVNLFDTGRAARLLQY--PRFSLAYMLKRHCNIDADKQ 376 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q +DW L ++YA D +L + + ++L + G Sbjct: 377 YQLADWRTRPLDKNMVKYAREDTRYLLFIYDRLKKELLQAG 417 >gi|320534424|ref|ZP_08034906.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 171 str. F0337] gi|320133371|gb|EFW25837.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 171 str. F0337] Length = 424 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 8/180 (4%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 A+ A +AVD E ++QL G GT+ + + +G L L Sbjct: 43 AAQLLADGQGPVAVDAERASGFRYGQDAYLIQLRRDGIGTLLVDPVTSGP--LTELATAL 100 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 E I H DI L G+R +F T++A+RL GL ++E LG+ Sbjct: 101 DGP--EWILHAADQDIPCL-TALGLRADSLFDTELAARLLGRQH--VGLGAVIEETLGLR 155 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++K ++DWS L L YAA DV L LR +L+ G+ A + + Sbjct: 156 LAKDHAAADWSTRPLPASWLTYAALDVELLIDLRNALATELKAAGKDQWAAQEFEHVRTK 215 >gi|51013151|gb|AAT92869.1| YOR001W [Saccharomyces cerevisiae] Length = 733 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + IAVD E +C++Q+S + + + ++N L + + Sbjct: 228 DLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTL-KLRENLHILNEVFTNPSI 286 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L G+ V +F T AS+ +H L L+ SK Sbjct: 287 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG--LPRHSLAYLLENFANFKTSKKY 344 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 Q +DW LS YA +D L + Q KL + + R Sbjct: 345 QLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKR 399 >gi|151945630|gb|EDN63871.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789] gi|190407342|gb|EDV10609.1| exosome complex exonuclease RRP6 [Saccharomyces cerevisiae RM11-1a] gi|207341289|gb|EDZ69386.1| YOR001Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256274006|gb|EEU08922.1| Rrp6p [Saccharomyces cerevisiae JAY291] gi|259149485|emb|CAY86289.1| Rrp6p [Saccharomyces cerevisiae EC1118] Length = 733 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + IAVD E +C++Q+S + + + ++N L + + Sbjct: 228 DLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTL-KLRENLHILNEVFTNPSI 286 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L G+ V +F T AS+ +H L L+ SK Sbjct: 287 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG--LPRHSLAYLLENFANFKTSKKY 344 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 Q +DW LS YA +D L + Q KL + + R Sbjct: 345 QLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKR 399 >gi|323335702|gb|EGA76985.1| Rrp6p [Saccharomyces cerevisiae Vin13] Length = 733 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + IAVD E +C++Q+S + + + ++N L + + Sbjct: 228 DLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTL-KLRENLHILNEVFTNPSI 286 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L G+ V +F T AS+ +H L L+ SK Sbjct: 287 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG--LPRHSLAYLLENFANFKTSKKY 344 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 Q +DW LS YA +D L + Q KL + + R Sbjct: 345 QLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKR 399 >gi|242218119|ref|XP_002474853.1| predicted protein [Postia placenta Mad-698-R] gi|220725980|gb|EED79945.1| predicted protein [Postia placenta Mad-698-R] Length = 882 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 3/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IA+D E +C++QLS + + +A + L + D + Sbjct: 263 LRSAQEIAIDLEYHSYRTFGGFVCLMQLSTREEDWVVDTLAV-RDEMEALNEVFTDSQIV 321 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L F + + +F T AS++ +H L L+ K Q Sbjct: 322 KVLHGAESDIVWLQQDFNLYIVNLFDTYHASKVLD--FPRHSLATLLEMYCDFTADKRYQ 379 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +DW L +E L YA SD L + L Sbjct: 380 LADWRIRPLPEEMLAYARSDTHFLLYIYDNLRNAL 414 >gi|6324574|ref|NP_014643.1| Rrp6p [Saccharomyces cerevisiae S288c] gi|14195186|sp|Q12149|RRP6_YEAST RecName: Full=Exosome complex exonuclease RRP6; AltName: Full=Ribosomal RNA-processing protein 6 gi|1150996|gb|AAC49480.1| hypothetical protein UNC733 [Saccharomyces cerevisiae] gi|1420088|emb|CAA99189.1| unnamed protein product [Saccharomyces cerevisiae] gi|285814890|tpg|DAA10783.1| TPA: Rrp6p [Saccharomyces cerevisiae S288c] Length = 733 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + IAVD E +C++Q+S + + + ++N L + + Sbjct: 228 DLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTL-KLRENLHILNEVFTNPSI 286 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L G+ V +F T AS+ +H L L+ SK Sbjct: 287 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG--LPRHSLAYLLENFANFKTSKKY 344 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 Q +DW LS YA +D L + Q KL + + R Sbjct: 345 QLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKR 399 >gi|58265702|ref|XP_570007.1| PM-scl autoantigen [Cryptococcus neoformans var. neoformans JEC21] gi|57226239|gb|AAW42700.1| PM-scl autoantigen, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1016 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 61/178 (34%), Gaps = 4/178 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAPNLVGMLVDEKR 75 + IAVD E + C++Q+S + + +A + + D Sbjct: 325 LKQAKEIAVDLEHHDMRSYAGFTCLIQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTI 384 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L F + V +F T S Q L L+ K Sbjct: 385 VKVFHGADSDIIWLQRDFEIFVVNLFDTY--SACVVLEMPQRSLSALLQHYCNFEADKRY 442 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQF-TEKLQRLGRSDLATSCCNFLMDRAE 192 Q +DW L D L YA SD L + L + R +C ++D A Sbjct: 443 QRADWRIRPLPDGMLYYARSDTHFLLFIYDNLRNALLHKSSRPSSPANCGTIVLDSAR 500 >gi|326773241|ref|ZP_08232524.1| ribonuclease D [Actinomyces viscosus C505] gi|326636471|gb|EGE37374.1| ribonuclease D [Actinomyces viscosus C505] Length = 424 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 8/180 (4%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 A+ A +AVD E ++QL G GT+ I + G L L Sbjct: 43 AAQLLAAGRGPVAVDAERASGFRYGQDAYLIQLRRDGVGTLLIDPVTTGP--LTELATAL 100 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 E I H DI L G++ +F T++A+RL GL ++E LG+ Sbjct: 101 DGP--EWILHAADQDIPCLTAR-GLKAASLFDTELAARLLGRQH--VGLGAVIEETLGLR 155 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++K ++DWS L L YAA DV L LR +L+ G+ A + + Sbjct: 156 LAKDHAAADWSTRPLPTSWLTYAALDVELLIDLREALATELEAAGKDQWAAQEFEHVRTK 215 >gi|134109437|ref|XP_776833.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259513|gb|EAL22186.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1016 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 61/178 (34%), Gaps = 4/178 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAPNLVGMLVDEKR 75 + IAVD E + C++Q+S + + +A + + D Sbjct: 325 LKQAKEIAVDLEHHDMRSYAGFTCLIQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTI 384 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L F + V +F T S Q L L+ K Sbjct: 385 VKVFHGADSDIIWLQRDFEIFVVNLFDTY--SACVVLEMPQRSLSALLQHYCNFEADKRY 442 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQF-TEKLQRLGRSDLATSCCNFLMDRAE 192 Q +DW L D L YA SD L + L + R +C ++D A Sbjct: 443 QRADWRIRPLPDGMLYYARSDTHFLLFIYDNLRNALLHKSSRPSSPANCGTIVLDSAR 500 >gi|297571370|ref|YP_003697144.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595] gi|296931717|gb|ADH92525.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595] Length = 398 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 8/191 (4%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAG 59 + I + + E AVDTE + +R +VQ+ G G V + I Sbjct: 18 LPEITHDDYESAVERLRNGHGPFAVDTERAMGIRYSNRAYLVQIKRAGSGIVLLDPIGIE 77 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + +L ++ D E I H D+ L G+ VF T++A + ++ L Sbjct: 78 DRLG-DLATIMHD---EWILHAADQDLPCL-RELGLEPSNVFDTELAGLILGY--DRVSL 130 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + + E LG ++K +DWSA L E YAA DV L LR T KL+ GR + Sbjct: 131 QSMIAEELGFVLAKEHSDADWSARPLGPELRAYAALDVDLLIELRESLTGKLKEAGRYEW 190 Query: 180 ATSCCNFLMDR 190 S C + R Sbjct: 191 FLSECEEVRRR 201 >gi|224003495|ref|XP_002291419.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973195|gb|EED91526.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 181 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 5/153 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IA+D E +C++QLS I ++ L +L + K+ Sbjct: 31 IALDLEAHSHRTFAGFVCLIQLSIHISSGYDFLIDALSLRHVIPTCLGPILANPNILKVM 90 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H DI L FG V +F T ASR + GL L++ G++ KA Q SD Sbjct: 91 HGADSDIPWLQRDFGCYVVNLFDTGRASRALKFQ--SAGLAFLLRKYAGLDPDKAHQLSD 148 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 W L D+ YA +D +L + + +L+ Sbjct: 149 WRRRPLPDDMRTYAVADTRYLLDIYDKLRLELK 181 >gi|307177174|gb|EFN66407.1| Exosome component 10 [Camponotus floridanus] Length = 1189 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 5/169 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + IAVD E + C++Q+S + I +A + L + Sbjct: 248 DLKNQKEIAVDLEHHSYRTFQGITCLMQISTVNTDYLIDTLAL-RSELHQLNEIFTKPTI 306 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KIFH DI L + V +F T A++ L L + GIN +K Sbjct: 307 LKIFHGADMDILWLQRDLSLYVVNMFDTHQAAKQLN--LPYLSLAYLLNKYCGINPNKHF 364 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL--GRSDLATS 182 Q +DW L +E ++YA D +L ++ +L G+S++ + Sbjct: 365 QLADWRIRPLPEELMKYAREDTHYLLHIKDMLKNELIETANGKSNILKA 413 >gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500] Length = 1011 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 3/159 (1%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 V+ AVD E + +C++Q+S I+ + + L + K K+ Sbjct: 292 QVEEFAVDLEAHNYRSFQGFVCLMQVSTRTEDF-IVDTLVLRSHMKMLNVPFTNPKIVKV 350 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H D+ L FG+ + +F T ASR+ L L+ G++ +K Q + Sbjct: 351 LHGSESDVKWLQRDFGIYIVNMFDTGQASRILEY--PSASLAFLLRFYCGVDANKKFQLA 408 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 DW + +E ++YA D +L + + +L G+S Sbjct: 409 DWRIRPVPEEMIKYAREDTHYLLYIYDRLRNELVLKGKS 447 >gi|255712831|ref|XP_002552698.1| KLTH0C11066p [Lachancea thermotolerans] gi|238934077|emb|CAR22260.1| KLTH0C11066p [Lachancea thermotolerans] Length = 735 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 57/158 (36%), Gaps = 3/158 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + IA+D E C++Q+S + I IA L + D K K+ Sbjct: 234 ANEIAIDLEHHDYRTYYGITCLMQISTREKDWLIDTIALRDDLW-ILNEVFTDPKITKVL 292 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H DI L G+ + +F T ASRL + +H L L+ SK Q SD Sbjct: 293 HGAFMDIIWLQRDLGLYIVSLFDTYHASRLLG--SPKHSLAYLLERYAHFKTSKKYQLSD 350 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 W L YA +D L + L + Sbjct: 351 WRVRPLPKALKAYARADTHFLLNIYDNMRNSLIEQNKL 388 >gi|260906565|ref|ZP_05914887.1| putative ribonuclease D [Brevibacterium linens BL2] Length = 384 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 12/186 (6%) Query: 10 DIPAEC------AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 D PAE A+ IA+D E + R +VQL + ++ + + Sbjct: 13 DTPAEFSSACAELAQGSGPIAIDAERASGIRYDQRAFLVQLRRANAGTYLLD-SEVLADL 71 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L E + H D+ L G++ +F T++A+R+ + GL Sbjct: 72 SPLNDAFA--GAEWVIHSVTQDLPCLQER-GMQPEVLFDTELAARMLG--WEKFGLAAVA 126 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + LG+ ++K ++DWS L E L YAA DV L +R E L + + A Sbjct: 127 ERTLGVRLAKEHSAADWSKRPLPKEWLNYAALDVEVLLPIRDILHEALIEADKWEFARQE 186 Query: 184 CNFLMD 189 L+D Sbjct: 187 FEHLLD 192 >gi|326775908|ref|ZP_08235173.1| 3'-5' exonuclease [Streptomyces cf. griseus XylebKG-1] gi|326656241|gb|EGE41087.1| 3'-5' exonuclease [Streptomyces cf. griseus XylebKG-1] Length = 423 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 11/184 (5%) Query: 6 VHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61 V D AE A + +AVD E R +VQL G G+ I + G Sbjct: 42 VTSDDALAEVVAAFAAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPV--GCP 99 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + L L E I H D+ L G+ +F T++A RL + GL Sbjct: 100 DLSGLGSALS--GTEWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAG--FPRVGLGA 154 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ +LG + K + DWS L + L+YAA DV L LR + E+L+R G+ + A Sbjct: 155 MVENVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLIDLRDELEEELERQGKLEWAR 214 Query: 182 SCCN 185 + Sbjct: 215 EEFD 218 >gi|300858616|ref|YP_003783599.1| ribonuclease D [Corynebacterium pseudotuberculosis FRC41] gi|300686070|gb|ADK28992.1| Ribonuclease D [Corynebacterium pseudotuberculosis FRC41] gi|302206328|gb|ADL10670.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis C231] gi|302330885|gb|ADL21079.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis 1002] gi|308276570|gb|ADO26469.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis I19] Length = 401 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 68/177 (38%), Gaps = 6/177 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGML 70 A V A+DTE DR ++Q+ GTV I + +L + Sbjct: 25 AARLLESGVGPFAIDTERASGFRYDDRAFLLQIRRRQAGTVLIDPSVHPEAVTQHLGKAI 84 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 I H D+ L G+R +F T++A RL + L +E++G+ Sbjct: 85 --NSHTWIIHAAPSDLPCL-RELGLRPSNIFDTELAGRLMGM--PRVNLAAMSEEIVGLT 139 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + K + DWS L + L YAA DV L L E L G+ + A L Sbjct: 140 LLKGHGAEDWSRRPLPIDWLNYAALDVETLLDLADAMAELLDSQGKLEWAEQEFEHL 196 >gi|307212494|gb|EFN88225.1| Exosome component 10 [Harpegnathos saltator] Length = 804 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 3/159 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + IAVD E + C++Q+S D I + + L + Sbjct: 189 DLKRYNEIAVDLEHHSYRSFQGVTCLMQISTVDTDYLIDTL-ILRSELHQLNEIFTKPTI 247 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH FDI L + V +F T A++ L LK+ IN +K Sbjct: 248 LKVFHGADFDIQWLQRDLSLYVVNMFDTHQAAKQLN--FPYLSLAFLLKKYCNINPNKHF 305 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 Q +DW L +E ++YA D +L ++ +L L Sbjct: 306 QLADWRIRPLPEELMKYAREDTHYLLHIKDMLKNELIEL 344 >gi|50306309|ref|XP_453127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642261|emb|CAH00223.1| KLLA0D01309p [Kluyveromyces lactis] Length = 744 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 3/168 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D E +C++Q+S + + IA ++ L + D K+ H Sbjct: 235 LAIDLEHHDYRSYYGIVCLMQISDREHDWIVDTIAL-REELYILNDIFTDPNVTKVLHGA 293 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L G+ + +F T ASR+ +H L L+ SK Q +DW Sbjct: 294 FMDIIWLQRDLGLYIVGLFDTYHASRMLG--FPKHSLAYLLERFANFKTSKKYQLADWRI 351 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 L+ L YA +D L + + L + + R Sbjct: 352 RPLTKPMLAYARADTHFLLNIFDKLRNSLLEQNKMSDVLHESRKVAKR 399 >gi|171910647|ref|ZP_02926117.1| ribonuclease D, putative [Verrucomicrobium spinosum DSM 4136] Length = 381 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 6/179 (3%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ + + + +DTE L +++LC++QL+ +G +I P L Sbjct: 28 ADLNSLITRGELTRVYLDTEADSLHHFQEKLCLIQLAA-NGIYALIDPLVLSDLGPLLEV 86 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + + E FH +D+ +L T + T++A+RLT T GL +++ G Sbjct: 87 V---DNAEVWFHSADYDLTLLKRTCNWTPTHLKDTQVAARLTGHRT--FGLAALVEQHCG 141 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + + K+ Q DWS L + YA DV +L L F L R C L Sbjct: 142 VTLCKSSQKEDWSLRPLPAKMQAYAVDDVRYLGRLVDIFMTDLVAKDRVTWFEQSCESL 200 >gi|182435269|ref|YP_001822988.1| putative ribonuclease D [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463785|dbj|BAG18305.1| putative ribonuclease D [Streptomyces griseus subsp. griseus NBRC 13350] Length = 423 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 11/184 (5%) Query: 6 VHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61 V D AE A + +AVD E R +VQL G G+ I + G Sbjct: 42 VTSDDALAEVVAAFAAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPV--GCP 99 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + L L E I H D+ L G+ +F T++A RL + GL Sbjct: 100 DLSGLGSALS--GTEWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAG--FPRVGLGA 154 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++ +LG + K + DWS L + L+YAA DV L LR + E+L+R G+ + A Sbjct: 155 MVENVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLIDLRDELEEELERQGKLEWAR 214 Query: 182 SCCN 185 + Sbjct: 215 EEFD 218 >gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue [Leishmania infantum] Length = 743 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 5/161 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IAVD E + C++Q+S + I+ + + L + ++ K+ Sbjct: 252 ASEIAVDLEHHDFYSYQGFTCLMQISTREEDF-IVDCLKLRSSMGALAPVFLNPSILKVL 310 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H R DI L F + V F T +A +T H L + + ++K Q++D Sbjct: 311 HGAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPHSLAFAVDHFCQVKLNKKYQTAD 367 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179 W LS E + YA D L + + L GR+ + Sbjct: 368 WRVRPLSAEMVHYARQDTHFLLYVYDRLKALLLNSEGRASI 408 >gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51] gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 578 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 5/195 (2%) Query: 6 VHEGDI-PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +H D+ P IAVDTET GL P +L ++QL+ D V +I + Sbjct: 7 LHPADLVPYMEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAEDLPVLVIDCFSFLPEGR 66 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDN 122 L+ ++ KIF +FD+ L + +F T +AS+L R Q LK Sbjct: 67 ELINAILSTSGIKIFQNAKFDLQFLM-ALDIFPPTLFDTMLASQLLRGSGGPVQSNLKAL 125 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + L ++ K +Q+S+W +L++ Q+ YAA D L LR ++ + +A Sbjct: 126 AQHYLNEDLDKEEQTSNW-QGELTESQILYAARDAEILLRLRKVMIPQILENHLTQIAGI 184 Query: 183 CCNFLMDRAELDLLG 197 + A L+ G Sbjct: 185 EFRCVKAMAHLEYRG 199 >gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio] Length = 500 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 61/168 (36%), Gaps = 3/168 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I E + AVD E C++Q+S + II + Sbjct: 289 ISTLEDLVALNEKLAKTTEFAVDLEHHSYRSFLGITCLMQISTREEDF-IIDTLELRSEM 347 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L D K+FH DI L FG+ V +F T A+R N L L Sbjct: 348 YILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRN--SLDHLL 405 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 K ++ K Q +DW L DE L+YA +D +L + + L Sbjct: 406 KVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYVYDRVRADL 453 >gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 597 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 6/182 (3%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREK 77 I +DTET GL P +R+ ++Q++ V I+ +AA L +L + K Sbjct: 33 KARVIGIDTETTGLDPLTERIRLIQIAAPQHPVIIVDLAALADSELSPLKALL-NSSALK 91 Query: 78 IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQ-HGLKDNLKELLGINISKAQ 135 +F G+FD VL G+R P F +AS++ R+ + H L+ E LGI + K+ Sbjct: 92 VFQNGKFDWQVLEMA-GLRPSGPFFDVMLASQVLRSGLKKDHDLQSLTFEFLGIKLDKSL 150 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 QSS+++ LS QL+YAA D L LR + KL+ G + A + A+++L Sbjct: 151 QSSNFAGK-LSASQLEYAALDAAVLLKLRARLHSKLRSAGLLETAKIEFAAMPAVAQMEL 209 Query: 196 LG 197 G Sbjct: 210 NG 211 >gi|313837100|gb|EFS74814.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA2] gi|314927873|gb|EFS91704.1| 3'-5' exonuclease [Propionibacterium acnes HL044PA1] gi|314971873|gb|EFT15971.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA3] gi|328907332|gb|EGG27098.1| 3'-5' exonuclease [Propionibacterium sp. P08] Length = 412 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 7/179 (3%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIA-AGQKNAPNLVGMLVD 72 + +A+DTE R C++QL G GT + +A +G + L L Sbjct: 30 ALSNGHGPVAIDTERAHGFRYSPRACLIQLRREGSGTHLVDPLAFSGNTDLKPLAEALAG 89 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + I H D+ L + +R +F T++A RL + GL ++ G+ + Sbjct: 90 TQ--WILHAAIQDMPCLAMS-DLRPDDLFDTELAGRLLN--LPRVGLGPMIEHYCGVTLL 144 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 K +SDWS L + L YAA DV L LR + L + A L++ A Sbjct: 145 KEHSASDWSRRPLPQDCLVYAALDVELLTDLRDKTLNDLCAARKEQWARQEFAHLVEVA 203 >gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 743 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 5/161 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IAVD E + C++Q+S + I+ + + L + ++ K+ Sbjct: 252 ASEIAVDLEHHDFYSYQGFTCLMQISTREEDF-IVDCLKLRSSMGALAPVFLNPSILKVL 310 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H R DI L F + V F T +A +T H L + + ++K Q++D Sbjct: 311 HGAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPHSLAFAVDHFCQVKLNKKYQTAD 367 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179 W LS E + YA D L + + L GR+ + Sbjct: 368 WRVRPLSAEMVHYARQDTHFLLYVYDRLKALLLNSEGRASI 408 >gi|148653524|ref|YP_001280617.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1] gi|148572608|gb|ABQ94667.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1] Length = 431 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 6/172 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 D +A+DTE + L +VQ++ G I + + +L E Sbjct: 62 DLETCDRVALDTEFIKRNTYFPILALVQINTGKAIYLIDAP---KLDLTEFWVVLE-EMP 117 Query: 76 EKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 I+H D+ + + VF T+IA Q G + L + L +++ KA Sbjct: 118 LMIWHACGEDLGIFYLLSESPALTNVFDTQIALSYLTGQL-QMGYQQALSQELDVHVEKA 176 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 + SDW A LS EQ YA DV +L L ++L + G +D C Sbjct: 177 ESQSDWLARPLSHEQENYAIDDVRYLLNLYDILQQQLSKQGLTDKVVEDCQL 228 >gi|319948476|ref|ZP_08022610.1| 3'-5' exonuclease [Dietzia cinnamea P4] gi|319437843|gb|EFV92829.1| 3'-5' exonuclease [Dietzia cinnamea P4] Length = 412 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 5/176 (2%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 + + IAVD E + +R ++QL ++ + L +L Sbjct: 34 DALDASSEPIAVDVERASGIRYSERAFLLQLRVPGEPALLVDPETPGRTVGPLATVLS-- 91 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 +R +FH D+ L G+R + T++A R + L + E LGI ++K Sbjct: 92 QRPLLFHAASQDLPSL-RELGIRPTALVDTELAGRFLG--IERVNLGAMISEHLGIGLAK 148 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 A ++DWS L L YAA DV+ LH L + +L LGR + + C L+D Sbjct: 149 AHSAADWSRRPLPAAWLDYAAYDVLFLHELADEVLPRLDALGRREWFEAECRHLVD 204 >gi|300741364|ref|ZP_07071385.1| putative ribonuclease D [Rothia dentocariosa M567] gi|300380549|gb|EFJ77111.1| putative ribonuclease D [Rothia dentocariosa M567] Length = 424 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 70/178 (39%), Gaps = 7/178 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 AE +AVDTE + R +VQL D I A + + L Sbjct: 50 AAESLRAASGPVAVDTERAQGIRYGIRAFLVQLKREDKLYLIDPEAFS--DLRIINDALA 107 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D E I H D L G+R R +F T++ +RL + L ++ELLG + Sbjct: 108 DA--EWIIHAATQDFPSL-DLLGMRPRLLFDTELGARLAG--LERVNLGAVVEELLGYKL 162 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 K DWS L + L YA DV L LR E L+ G+ + A +L Sbjct: 163 EKKHSQEDWSQRPLPESWLNYACLDVDVLADLRDALEEVLEDQGKLEYARQEFAYLCS 220 >gi|255319565|ref|ZP_05360778.1| ribonuclease D, processes tRNA [Acinetobacter radioresistens SK82] gi|262379863|ref|ZP_06073019.1| ribonuclease D [Acinetobacter radioresistens SH164] gi|255303363|gb|EET82567.1| ribonuclease D, processes tRNA [Acinetobacter radioresistens SK82] gi|262299320|gb|EEY87233.1| ribonuclease D [Acinetobacter radioresistens SH164] Length = 380 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 7/191 (3%) Query: 1 MTTIRVHEGDIPAECAARYVDAI-AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + D+ + A+DTE + + +L + Q++ + + Sbjct: 1 MFQFIEQQTDLEKVLYLMDQHPVYALDTEFIKVDTFWPKLGVFQINIAEQIFLLD--GTT 58 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHG 118 + ++ IFH DI ++++ G + VF T++ Q Sbjct: 59 LDLTAFWKKVYRAQQ--NIFHACSEDIDLIYHYAGPYSLSNVFDTQVGLSFL-GQGLQVS 115 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 ++ LK +L I+I K Q SDW A L+DEQL YAA+DV++L L Q +L++ + Sbjct: 116 YQNALKLVLDIDIEKDQTRSDWLARPLTDEQLHYAANDVLYLGQLAEQIKTELKQKNLYE 175 Query: 179 LATSCCNFLMD 189 C L Sbjct: 176 CVLEDCKHLTQ 186 >gi|296815198|ref|XP_002847936.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS 113480] gi|238840961|gb|EEQ30623.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS 113480] Length = 810 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 4/180 (2%) Query: 2 TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 T D+ A A + IAVD E +C++Q+S + + + + Sbjct: 246 ATFVETMEDVHAMLAELKKAKEIAVDLEHHDAHVYHGLVCLMQISTREQDWIVDTLKPWR 305 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L + D K+ H D+ L G+ + +F T A+ + + LK Sbjct: 306 DQLQVLNEVFADPSIVKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASML--QLPKKSLK 363 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSDL 179 L++ +G + K Q++DW L L YA SD L + + +L + GR + Sbjct: 364 FLLQQYVGFDADKQYQTADWRIRPLLPGMLDYARSDTHFLLYIFDRLRNELIEASGRDAI 423 >gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana MHOM/GT/2001/U1103] Length = 743 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 5/161 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IAVD E + C++Q+S + I+ + + L + ++ K+F Sbjct: 252 SSEIAVDLEHHDFYSYQGFTCLMQISTREEDF-IVDCLKLRSSMGALAPVFLNPSILKVF 310 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H R DI L F + V F T +A +T + L + + ++K Q++D Sbjct: 311 HGAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPYSLAFAVDHFCQVKLNKKYQTAD 367 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179 W LS E + YA D L + + L GR+ + Sbjct: 368 WRVRPLSAEMVHYARQDTHFLLYVHDRLKALLLNSEGRASI 408 >gi|289641274|ref|ZP_06473440.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata] gi|289508872|gb|EFD29805.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata] Length = 474 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 8/167 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +A D E R +VQ+ G GT + +A + + + D E + H Sbjct: 56 PVAFDAERASGYRYSQRAYLVQIRRRGSGTHLLDPVALA--DLTCVQDAVGDA--EWVLH 111 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L G+R +F T++A RL + GL ++++LG + K ++DW Sbjct: 112 AANQDLPCL-AEVGLRPSRLFDTELAGRLLGY--ERVGLGIMVEKVLGFTLEKGHSAADW 168 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S L + L+YAA DV L LR +L+ G+ A + Sbjct: 169 STRPLPEPWLRYAALDVELLVELRDALETELETQGKLAFAREEFAAI 215 >gi|326560439|gb|EGE10821.1| ribonuclease D [Moraxella catarrhalis 7169] gi|326565826|gb|EGE15988.1| ribonuclease D [Moraxella catarrhalis BC1] gi|326570481|gb|EGE20521.1| ribonuclease D [Moraxella catarrhalis BC8] Length = 407 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 12/191 (6%) Query: 1 MTTIRVHEGD----IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 + TI V D + E A D +A+DTE + L ++Q++ G+ I Sbjct: 21 LPTIWVQNDDDLYALIDEIDA--SDVVALDTEFIKRTTYYPILALIQINTGNAIYLIDAP 78 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTN 115 + + L + +++ D+ + + +F +I Sbjct: 79 ---KLDLTEFWQALAEVPIM-VWYACGEDLGIFYLLAKCPPLTNIFDVQIGVAYLSGKL- 133 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G L E+LGI I K + S+W A LS EQ YAA+DV +L L +L G Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEVVRTELAARG 193 Query: 176 RSDLATSCCNF 186 + N Sbjct: 194 ILNCVLEDSNH 204 >gi|145295805|ref|YP_001138626.1| hypothetical protein cgR_1730 [Corynebacterium glutamicum R] gi|140845725|dbj|BAF54724.1| hypothetical protein [Corynebacterium glutamicum R] Length = 403 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 6/179 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70 A+ A A+DTE DR ++Q+ G GT+ + L +L Sbjct: 25 AADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVL 84 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 +E I H D+ L + +F T++A RL + L ++++ ++ Sbjct: 85 --NGQEWIIHAASTDLPSL-AWLDLHPGLLFDTELAGRLAG--FDHVNLAAMVEQIFDLH 139 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K S DWS L + L YAA DV L L E L + G+ A ++D Sbjct: 140 LLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFVHIVD 198 >gi|25028351|ref|NP_738405.1| hypothetical protein CE1795 [Corynebacterium efficiens YS-314] gi|23493636|dbj|BAC18605.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 413 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 6/179 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70 A+ A A+DTE DR ++Q+ G GT+ + + + +L +L Sbjct: 31 AADVLAGGSGPFAIDTERASGFRYDDRAFLIQIRRRGAGTLLFDPESHRPELSRSLGPVL 90 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 +E I H D+ L + +F T++A RL L ++++ ++ Sbjct: 91 --NGQEWIIHAAATDLPSL-AWLDLHPGTLFDTELAGRLAG--FELVNLAAMVEQIFDLH 145 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K + DWS L +E L YAA DV L L E L G+ D A + Sbjct: 146 LLKGHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWAEQEFEHIRT 204 >gi|21324671|dbj|BAB99294.1| Ribonuclease D [Corynebacterium glutamicum ATCC 13032] Length = 421 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 6/179 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70 A+ A A+DTE DR ++Q+ G GT+ + L +L Sbjct: 43 AADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVL 102 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 +E I H D+ L + +F T++A RL + L ++++ ++ Sbjct: 103 --NGQEWIIHAASTDLPSL-AWLDLHPGLLFDTELAGRLAG--FDHVNLAAMVEQIFDLH 157 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K S DWS L + L YAA DV L L E L + G+ A ++D Sbjct: 158 LLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFVHIVD 216 >gi|149375206|ref|ZP_01892978.1| ribonuclease D [Marinobacter algicola DG893] gi|149360570|gb|EDM49022.1| ribonuclease D [Marinobacter algicola DG893] Length = 382 Score = 150 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 7/194 (3%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ A + +A+DTE + +VQL G + + + + Sbjct: 24 DDLDRWLAEGQGEPLALDTEFERVNTFFPIPGLVQLGLGQRFCLVDP--SVAEASEGFRN 81 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D K+ + D+ + + + V +I + L G ++ L G Sbjct: 82 ALTDPGTPKLLYAMSEDLELFRHWLQLEPEGVVDLQIGAALAGAGF-SVGYARLVETLFG 140 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 ++ K+ SDW + LS Q +YA DV L L +LQ+ G Sbjct: 141 ESLDKSATRSDWVSRPLSAAQERYALDDVRFLVPLYHWVITRLQKRGLEAALADES---- 196 Query: 189 DRAELDLLGWENVD 202 R +L +N D Sbjct: 197 TRFSKELAAQDNPD 210 >gi|257454439|ref|ZP_05619701.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60] gi|257448205|gb|EEV23186.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60] Length = 403 Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 8/184 (4%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 ++ + VD IA+DTE + L ++Q++ G I Sbjct: 23 VKTQDALFALLDDLEQVDTIALDTEFIKRDTFFPILALIQINTGKAIYLIDAPKLY---L 79 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV--RPVFCTKIASRLTRTYTNQHGLKD 121 +L D + H D+ + +Y R VF T+I T N G + Sbjct: 80 EEFWEVLAD-IPTVVLHACGEDLGI-YYLLSNLPALRNVFDTQIGLGFL-TGENSLGYQK 136 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +L+E + +++ K + SDW L+ EQ YA DV +L + + +L G A Sbjct: 137 SLQETIAVHVDKGESQSDWLQRPLTPEQESYAVDDVRYLLPMFVAIKTQLIEQGLWQYAV 196 Query: 182 SCCN 185 C Sbjct: 197 EDCQ 200 >gi|19553105|ref|NP_601107.1| ribonuclease D [Corynebacterium glutamicum ATCC 13032] gi|62390740|ref|YP_226142.1| ribonuclease D protein [Corynebacterium glutamicum ATCC 13032] gi|41326078|emb|CAF20241.1| PROBABLE RIBONUCLEASE D PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 403 Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 6/179 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70 A+ A A+DTE DR ++Q+ G GT+ + L +L Sbjct: 25 AADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVL 84 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 +E I H D+ L + +F T++A RL + L ++++ ++ Sbjct: 85 --NGQEWIIHAASTDLPSL-AWLDLHPGLLFDTELAGRLAG--FDHVNLAAMVEQIFDLH 139 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K S DWS L + L YAA DV L L E L + G+ A ++D Sbjct: 140 LLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFVHIVD 198 >gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo] gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis] Length = 1613 Score = 150 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 9/181 (4%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR----IAAGQKNAPNLVGMLVDEKREKIF 79 +D ET GL R DR+ ++Q+S D +I K LV +L + K+ Sbjct: 1060 TLDIETTGLNHREDRIRLLQISTPDQPSVVIDVFKVPVPTLKECTWLVKLLGSQAV-KVL 1118 Query: 80 HYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHG--LKDNLKELLGINISKAQQ 136 H G+FDI L + G V+ P+F T IA++L L + L I + K+QQ Sbjct: 1119 HNGKFDINFLSHN-GFNVKGPIFDTMIAAKLLSATRFNWSCKLGHVAERYLNIVLDKSQQ 1177 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196 SDW+ D L +EQ+ YA+ D L L EKL+ +A ++ +++ Sbjct: 1178 FSDWTLDPLFEEQVIYASRDTAVLLPLYFILQEKLKAERLDMIADIENKCVLAVCQMEQN 1237 Query: 197 G 197 G Sbjct: 1238 G 1238 >gi|227488764|ref|ZP_03919080.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51867] gi|227542239|ref|ZP_03972288.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51866] gi|227091186|gb|EEI26498.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51867] gi|227182068|gb|EEI63040.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51866] Length = 386 Score = 150 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 72/180 (40%), Gaps = 8/180 (4%) Query: 13 AECAARYVD--AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM 69 A+CAA IA+DTE DR ++QL G GT I A P L Sbjct: 21 ADCAATLSPGAPIAIDTERASGYTYDDRAYLIQLRQEGIGTFLIDAEALRDDLPPVLAP- 79 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + H DI L G+ +F T++A R ++ L +LGI Sbjct: 80 -AVNACPWVLHAAVSDIPCL-ADVGMTAPTLFDTEVAGRFLG--FDKVNLAAMTNRILGI 135 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++ K + +WS + L YAA DV L L T L+R G+ A + ++D Sbjct: 136 DLKKGHAAENWSKRPIPRSWLIYAALDVELLIELADTLTALLEREGKLAWAEAEFQHIID 195 >gi|259507406|ref|ZP_05750306.1| ribonuclease D [Corynebacterium efficiens YS-314] gi|259165031|gb|EEW49585.1| ribonuclease D [Corynebacterium efficiens YS-314] Length = 407 Score = 150 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 6/179 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70 A+ A A+DTE DR ++Q+ G GT+ + + + +L +L Sbjct: 25 AADVLAGGSGPFAIDTERASGFRYDDRAFLIQIRRRGAGTLLFDPESHRPELSRSLGPVL 84 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 +E I H D+ L + +F T++A RL L ++++ ++ Sbjct: 85 --NGQEWIIHAAATDLPSL-AWLDLHPGTLFDTELAGRLAG--FELVNLAAMVEQIFDLH 139 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K + DWS L +E L YAA DV L L E L G+ D A + Sbjct: 140 LLKGHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWAEQEFEHIRT 198 >gi|326561643|gb|EGE11980.1| ribonuclease D [Moraxella catarrhalis 103P14B1] gi|326562606|gb|EGE12917.1| ribonuclease D [Moraxella catarrhalis 46P47B1] gi|326571165|gb|EGE21189.1| ribonuclease D [Moraxella catarrhalis BC7] gi|326573455|gb|EGE23423.1| ribonuclease D [Moraxella catarrhalis 101P30B1] gi|326577111|gb|EGE27005.1| ribonuclease D [Moraxella catarrhalis O35E] Length = 407 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 12/191 (6%) Query: 1 MTTIRVHEGD----IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 + TI V D + E A D +A+DTE + L ++Q++ G+ I Sbjct: 21 LPTIWVQNDDDLYALIDEIDA--SDVVALDTEFIKRTTYYPILALIQINTGNAIYLIDAP 78 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTN 115 + + L E +++ D+ + + +F +I Sbjct: 79 ---KLDLTEFWQALA-EVPTMVWYACGEDLGIFYLLAKCPPLTNIFDVQIGVAYLSGKL- 133 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G L E+LGI I K + S+W A LS EQ YAA+DV +L L +L G Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEVVRTELAARG 193 Query: 176 RSDLATSCCNF 186 + N Sbjct: 194 ILNCVLEDSNH 204 >gi|68490644|ref|XP_710869.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314] gi|46432124|gb|EAK91626.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314] Length = 786 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 3/161 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + I +A + + L + D Sbjct: 248 LKKSTEIAVDLEHHDYRSYYGIVCLMQISNREQDWIIDTLAL-RDDLTVLNEVFADPDIV 306 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ V +F T ASR + L L+ SK Q Sbjct: 307 KVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRALG--FPRFSLAYLLEVYAHFKTSKQYQ 364 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DW LS L YA SD L + Q KL + Sbjct: 365 LADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKL 405 >gi|254579989|ref|XP_002495980.1| ZYRO0C07678p [Zygosaccharomyces rouxii] gi|238938871|emb|CAR27047.1| ZYRO0C07678p [Zygosaccharomyces rouxii] Length = 741 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 3/176 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + IAVD E +C++Q+S + +A + + L + + Sbjct: 227 DLKKSTEIAVDLEHHDYRSYYGIVCLMQVSTRQTDYLVDTLAL-RDDLVVLNEVFANPLI 285 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L G+ + +F T ASR +H L L+ SK Sbjct: 286 VKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASRALG--FPRHSLAYLLETFASFKTSKKY 343 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 Q +DW LS YA +D L + Q KL + + + R+ Sbjct: 344 QLADWRVRPLSKAMSAYARADTHFLLNIYDQLRNKLIIENKLAGVLAESRNVAKRS 399 >gi|296113063|ref|YP_003627001.1| ribonuclease D [Moraxella catarrhalis RH4] gi|295920757|gb|ADG61108.1| ribonuclease D [Moraxella catarrhalis RH4] gi|326563584|gb|EGE13838.1| ribonuclease D [Moraxella catarrhalis 12P80B1] Length = 407 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 12/191 (6%) Query: 1 MTTIRVHEGD----IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 + TI V D + E A D +A+DTE + L ++Q++ G+ I Sbjct: 21 LPTIWVQNDDDLYALIDEIDA--SDVVALDTEFIKRTTYYPILALIQINTGNAIYLIDAP 78 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTN 115 + + L E +++ D+ + + +F +I Sbjct: 79 ---KLDLTEFWQALA-EVPTMVWYACGEDLGIFYLLAKCPPLTNIFDVQIGVAYLSGKL- 133 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G L E+LGI I K + S+W A LS EQ YAA+DV +L L +L G Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEVVRTELAARG 193 Query: 176 RSDLATSCCNF 186 + N Sbjct: 194 ILNCVLEDSNH 204 >gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] Length = 582 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 6/177 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +D E GL P R+ ++QL+ G T + K+ L L K+ H Sbjct: 30 VGLDIEATGLSPLDARMRLLQLAAGGETFVVDVFEV--KDLSPLREALE-GGPLKVLHNA 86 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--TNQHGLKDNLKELLGINISKAQQSSDW 140 ++D + L G+R+ P+F T +A++L + L+ L + K + DW Sbjct: 87 KYDYSFLLAQHGIRLSPLFDTMLAAQLLDGGEQGPSYSLEAVAGRYLQETVDKTARREDW 146 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 S +LS EQL+YAA D L L + E L+R G ++ + AE++L G Sbjct: 147 SK-ELSREQLEYAARDAAILLPLHERLQELLEREGLGPVSRIEFGAVPAIAEMELAG 202 >gi|108760811|ref|YP_634116.1| putative ribonuclease D [Myxococcus xanthus DK 1622] gi|108464691|gb|ABF89876.1| putative ribonuclease D [Myxococcus xanthus DK 1622] Length = 389 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 7/182 (3%) Query: 13 AECAARYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 E A R ++A IAVD E + R RLC +QL+ D + + G L + Sbjct: 17 EESATRTLEAAREIAVDLEADSMHAFRARLCFLQLATDDQVFLLDTLQPGVVPG-MLAPL 75 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + D R K FH + D+ L GVRV+ +F T A+ L + GL D +E LG+ Sbjct: 76 MADPARTKFFHAAQGDLQFL-AEVGVRVQGLFDTHRAATLLG--WPKVGLADLARERLGV 132 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K Q SD+S L +Y A+DV +L L Q + + + C L D Sbjct: 133 ELPKEHQQSDFSIRPLPPGMREYIANDVRYLCELGRQVRDACREADILEEVLLDCVRLCD 192 Query: 190 RA 191 A Sbjct: 193 EA 194 >gi|326575647|gb|EGE25570.1| ribonuclease D [Moraxella catarrhalis CO72] Length = 407 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 12/191 (6%) Query: 1 MTTIRVHEGD----IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 + TI V D + E A D +A+DTE + L ++Q++ G+ I Sbjct: 21 LPTIWVQNDDDLYALIDEIDA--SDVVALDTEFIKRTTYYPILALIQINTGNAIYLIDAP 78 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTN 115 + + L E +++ D+ + + +F +I Sbjct: 79 ---KLDLTEFWQALA-EVPTMVWYACGEDLGIFYLLAKCPPLTNIFDVQIGVAYLSGKL- 133 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q G L E+LGI I K + S+W A LS EQ YAA+DV +L L +L G Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEVVRTELAARG 193 Query: 176 RSDLATSCCNF 186 + N Sbjct: 194 ILNCVLEDSNH 204 >gi|238879034|gb|EEQ42672.1| conserved hypothetical protein [Candida albicans WO-1] Length = 786 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 3/161 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + I +A + + L + D Sbjct: 248 LKKSTEIAVDLEHHDYRSYYGIVCLMQISNREQDWIIDTLAL-RDDLTVLNEVFADPDIV 306 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ V +F T ASR + L L+ SK Q Sbjct: 307 KVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRALG--FPRFSLAYLLEVYAHFKTSKQYQ 364 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DW LS L YA SD L + Q KL + Sbjct: 365 LADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKL 405 >gi|50286743|ref|XP_445801.1| hypothetical protein [Candida glabrata CBS 138] gi|49525107|emb|CAG58720.1| unnamed protein product [Candida glabrata] Length = 737 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 3/174 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + IA + + L + + Sbjct: 229 LKKSSEIAVDLEHHDFRSYYGLVCLMQISTRTQDYIVDTIAL-RDDLKMLNEVFTNPLIT 287 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ + +F T AS+ +H L L++ SK Q Sbjct: 288 KVFHGAFMDIIWLQRDLGLYIVSLFDTFHASKALG--LPKHSLAYLLEKYANFKTSKKYQ 345 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +DW LS + YA +D L + Q L G+ + R Sbjct: 346 LADWRRRPLSKAMMAYARADTHFLLNIFDQMRNGLISSGKLAGVLRESRNVALR 399 >gi|242011128|ref|XP_002426307.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510384|gb|EEB13569.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 737 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 55/158 (34%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 IA+D E + C++Q+S D I IA K L + + Sbjct: 266 LEKCKEIAIDLEHHSYRSFQGFTCLLQISTRDTDYVIDTIALRSK-LEGLNKIFTNPNIV 324 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L + V +F T A +L + L + I K Q Sbjct: 325 KVFHGADLDILWLQRDLSLYVVNMFDTHQAGKLLNY--SSLSLAYLMFHFCKIVAQKHFQ 382 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW L DE L YA D +L + L Sbjct: 383 MADWRIRPLPDELLAYAREDTHYLLYIYDNLRNILIEK 420 >gi|115396098|ref|XP_001213688.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114193257|gb|EAU34957.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 761 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + + ++Q+S + + + ++ L + D Sbjct: 241 LKAAKEIAIDLEHHDVHSYHGLVSLMQISTREKDWVVDTLKPWREELQMLNEVFTDPSIL 300 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ + +F T A+ + LK L++ + K Q Sbjct: 301 KVLHGSSMDIIWLQRDLGLYIVGMFDTYHAA--CALNYPKRSLKYLLQKFVNFEADKRYQ 358 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW L YA SD +L + +L R Sbjct: 359 MADWRIRPLPSGMFDYARSDTHYLLHIYDHLRNELIR 395 >gi|68490669|ref|XP_710857.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314] gi|46432110|gb|EAK91613.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314] Length = 785 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 3/161 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + I +A + + L + D Sbjct: 248 LKKSTEIAVDLEHHDYRSYYGIVCLMQISNREQDWIIDTLAL-RDDLTVLNEVFADPDIV 306 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ V +F T ASR + L L+ SK Q Sbjct: 307 KVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRALG--FPRFSLAYLLEVYAHFKTSKQYQ 364 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DW LS L YA SD L + Q KL + Sbjct: 365 LADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKL 405 >gi|195108841|ref|XP_001999001.1| GI24274 [Drosophila mojavensis] gi|193915595|gb|EDW14462.1| GI24274 [Drosophila mojavensis] Length = 901 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A R IA+D E C+VQ+S I ++ L +L D Sbjct: 289 ALTELRKASQIAIDVEHHSYRTFMGITCLVQMSTRTKD-YIFDTLKLREEMHILNLVLTD 347 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K KI H DI L + + +F T A++ + L LK L +++ Sbjct: 348 PKVLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAFLLKHYLDLDVD 405 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 K+ Q +DW L + + YA D +L + + T L Sbjct: 406 KSLQLADWRMRPLPQKLIDYARQDTHYLIYIYERLTNDL 444 >gi|289620962|emb|CBI52696.1| unnamed protein product [Sordaria macrospora] Length = 821 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 2/170 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I +EG + + IA+D E L ++Q+S + I + + Sbjct: 231 IDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDTLQPWRHKL 290 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D K K+ H D L G+ + +F T A + G L Sbjct: 291 EVLNEVFADPKIVKVLHGAFMDAIWLQRDLGLYLVGLFDTYHACAVLGYPGRSLGY--LL 348 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + K Q +DW L +E YA SD +L + +L Sbjct: 349 SKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIYDMLVNELIE 398 >gi|329945641|ref|ZP_08293374.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 170 str. F0386] gi|328528644|gb|EGF55609.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 170 str. F0386] Length = 372 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 7/168 (4%) Query: 24 AVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E +VQL G GT+ I + G L +L E I H Sbjct: 2 AVDAERASGFRYGQDAYLVQLRRDGVGTLLIDPVTCG-PLTTELAAVLDGP--EWILHAA 58 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L G+R +F T++A+RL GL ++E LG+ ++K ++DWS Sbjct: 59 DQDIPCL-TALGLRSASLFDTELAARLLGRQH--VGLGAVIEETLGLRLAKDHAAADWST 115 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 L L YAA DV L LR +L+ G+S A + R Sbjct: 116 RPLPASWLIYAALDVELLIDLRDALAAELETDGKSQWAAQEFEHVRTR 163 >gi|213964497|ref|ZP_03392697.1| ribonuclease D [Corynebacterium amycolatum SK46] gi|213952690|gb|EEB64072.1| ribonuclease D [Corynebacterium amycolatum SK46] Length = 433 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 70/186 (37%), Gaps = 13/186 (6%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72 E A+ +AVDTE DR ++Q G GT I ++ + + Sbjct: 36 EQLAKGHGWLAVDTERASAYRYDDRAFLLQFRRRGAGTFLIDP-----EDGRKAMAVFGS 90 Query: 73 --EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 I H D+ L G+ V T++A RL + L + LLG+ Sbjct: 91 SVNNLTWIIHAAHSDLPCL-AALGLYPTKVIDTELAGRLLG--LERVNLAALTERLLGVG 147 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC--NFLM 188 ++K DWS L + L YAA DV L L + L L R + C + Sbjct: 148 LAKGHGREDWSTRPLPADWLDYAALDVELLIELAEVLCQALTELDRLEWLEQECERELAI 207 Query: 189 DRAELD 194 +R LD Sbjct: 208 NRKYLD 213 >gi|195390616|ref|XP_002053964.1| GJ23053 [Drosophila virilis] gi|194152050|gb|EDW67484.1| GJ23053 [Drosophila virilis] Length = 904 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IA+D E C+VQ+S I +++ L +L D K Sbjct: 290 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRTKD-YIFDTLTLREDMHILNLVLTDPKVL 348 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H G DI L + + +F T A++ + L LK L +++ K+ Q Sbjct: 349 KILHGGDLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAFLLKHYLDLDVDKSLQ 406 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW L + + YA D +L + + T L + Sbjct: 407 LADWRMRPLPQKLIDYARQDTHYLIYVYERLTNDLLQA 444 >gi|150951537|ref|XP_001387875.2| ribosomal RNA processing 3'-5' exonuclease [Scheffersomyces stipitis CBS 6054] gi|149388676|gb|EAZ63852.2| ribosomal RNA processing 3'-5' exonuclease [Pichia stipitis CBS 6054] Length = 792 Score = 149 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S D I +A + + L + + Sbjct: 249 LKKSSEIAVDLEHHDYRSYYGIVCLMQISNRDQDWIIDTLAL-RDDLECLNTVFTNPHIV 307 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ + +F T AS+ + L L+ SK Q Sbjct: 308 KVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKSLG--FPKFSLAYLLETFAHFKTSKKYQ 365 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +DW LS + YA SD L ++ Q KL G Sbjct: 366 LADWRIRPLSPPMMAYARSDTHFLLSIFDQLKNKLIDAG 404 >gi|332971116|gb|EGK10083.1| ribonuclease D [Psychrobacter sp. 1501(2011)] Length = 437 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 6/172 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 D +A+DTE + L +VQ++ G+ I + + +L E Sbjct: 65 DLETRDRVALDTEFIKRSTYFPILALVQINTGECIYLIDAP---KLDLTEFWVVLE-EMP 120 Query: 76 EKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 I+H D+ + + VF T+IA Q G + L + L +++ K Sbjct: 121 LMIWHACGEDLGIFYLLSESPALTNVFDTQIALSYLTGQL-QMGYQQALSQELDVHVDKG 179 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 + SDW A L+ EQ YA DV +L L ++L + D C Sbjct: 180 ESQSDWLARPLTHEQESYAIDDVRYLLNLYDILQQQLTKQSLLDKVIEDCQL 231 >gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens] Length = 515 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 3/142 (2%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R IAVD E + +C++Q+S + +A P+L + D +K Sbjct: 239 RLAGEIAVDLENHNYRSFQGFVCLMQVSTRSEDFIVDALALRSHMGPSLKDLFADANVKK 298 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 + H DI L FG+ V +F T + A+R+ GL ++ L IN K Q Sbjct: 299 VMHGADRDIEWLQRDFGIYVCNMFDTGQQAARVL--QLEGFGLAFLMQRFLKINPDKRYQ 356 Query: 137 SSDWSADDLSDEQLQYAASDVV 158 +DW L E ++YA D Sbjct: 357 LADWRIRPLPAEMIKYAREDTH 378 >gi|258546025|ref|ZP_05706259.1| ribonuclease D [Cardiobacterium hominis ATCC 15826] gi|258518754|gb|EEV87613.1| ribonuclease D [Cardiobacterium hominis ATCC 15826] Length = 401 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 59/173 (34%), Gaps = 5/173 (2%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 D+E + +L +VQ GT + G +L + H D Sbjct: 73 DSEFVRERSYIPKLALVQTCQPGGTAQLYDPLEGDI---PWAPILHHPAPL-VMHAAAQD 128 Query: 86 IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDL 145 + ++ + T+ L + ++ LGI K+Q SDW A L Sbjct: 129 LELMQLCGDALPATIRDTQTGFALCSPHL-AVSYAALVEHYLGIAPDKSQTRSDWLARPL 187 Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGW 198 + QL YAA DV L L LQRLGR + R + W Sbjct: 188 NAAQLDYAADDVGLLARLYPLLVADLQRLGRLAWWAEESATQLARQQQTRDAW 240 >gi|71024099|ref|XP_762279.1| hypothetical protein UM06132.1 [Ustilago maydis 521] gi|46101781|gb|EAK87014.1| hypothetical protein UM06132.1 [Ustilago maydis 521] Length = 1027 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 3/177 (1%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLV 67 + V+ IA+D E + +C++QLS G I ++ + +A L Sbjct: 349 EQLRDHLDEPRVNEIAIDLEHHSYRTYQGIVCLMQLSTRWGDWIIDTLSDDVRQHAELLN 408 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + + K+ H D+ L G+ + +F T A+ + HGL + Sbjct: 409 SSFTNPDKVKVLHGANHDVLWLQRDLGLYLVNLFDTYHATNVLM--FPSHGLNYLMARYC 466 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 + K Q +DW L E L YA SD L + +L G D Sbjct: 467 NFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLFIYDNLRHELMEAGGIDAIRQVF 523 >gi|311113446|ref|YP_003984668.1| ribonuclease D [Rothia dentocariosa ATCC 17931] gi|310944940|gb|ADP41234.1| ribonuclease D [Rothia dentocariosa ATCC 17931] Length = 424 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 70/178 (39%), Gaps = 7/178 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 AE +AVDTE + R +VQL D I A + + L Sbjct: 50 AAESLRAASGPVAVDTERAQGIQYGIRAFLVQLKREDKLYLIDPEAFS--DLRIINDALA 107 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D E I H D L G+R R +F T++ +RL + L ++ELLG + Sbjct: 108 DA--EWIIHAATQDFPSL-DLLGMRPRLLFDTELGARLAG--LERVNLGAVVEELLGYKL 162 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 K DWS L + L YA DV L LR E L+ G+ + A +L Sbjct: 163 EKKHSQEDWSQRPLPESWLNYACLDVDVLADLRDALEEVLEDQGKLEYARQEFAYLCS 220 >gi|330802281|ref|XP_003289147.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum] gi|325080770|gb|EGC34311.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum] Length = 1045 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 4/168 (2%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 + C +V+ A+D E + +C++Q+S I +A + + L Sbjct: 259 QLEELCDKLSHVEEFAMDLEHHNYRSYQGFVCLMQISTRGEDFIIDTLAL-RSHIHMLNN 317 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + + K+ H DI L FG+ + +F T ASR+ L LK Sbjct: 318 VTTNPAIVKVLHGSDSDIKWLQRDFGIYIVNMFDTGQASRVLEY--PSASLAFLLKYFCA 375 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++ +K Q +DW + +E ++YA D +L + + +L G+ Sbjct: 376 VDANKKYQLADWRIRKIPEEMIKYAREDTHYLLYIYDRLRNELINKGK 423 >gi|189237006|ref|XP_966807.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum] Length = 947 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 5/170 (2%) Query: 4 IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I + + + E R+ +VD E C++Q+S D I +A + Sbjct: 257 IEIDKAEQLDELVETLRHCKEFSVDVEHHSYRSFMGITCLIQISTEDKDYLIDALAL-RD 315 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + KIFH DI L + V +F T A++ + L Sbjct: 316 KLSILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMFDTHQAAKALQY--PALSLAF 373 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +K+ + +K Q +DW L DE YA D +L + +L Sbjct: 374 LMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYIYKMMKREL 423 >gi|322799595|gb|EFZ20873.1| hypothetical protein SINV_12011 [Solenopsis invicta] Length = 813 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 11/183 (6%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T I+ D+ R IAVD E + C++Q+S I + + Sbjct: 269 TDIQTLLEDL------RNHKEIAVDLEHHSYRTFQGITCLMQISTITTDYLIDTLTL-RS 321 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + K+FH DI L + V +F T A+R L Sbjct: 322 ELHRLNEIFTKPSILKVFHGADMDILWLQRDLSLYVVNMFDTHQAARQLN--LPYLSLAH 379 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDL 179 +K+ I+++K Q +DW L E +YA D +L ++ +L G+S++ Sbjct: 380 LIKKYCDIDLNKQFQLADWRIRPLPLELTRYAREDTRYLLYIKDMLNNELIDAANGKSNI 439 Query: 180 ATS 182 + Sbjct: 440 LKA 442 >gi|157876102|ref|XP_001686412.1| exosome subunit rrp6p homologue [Leishmania major strain Friedlin] gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain Friedlin] Length = 742 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 5/158 (3%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 IAVD E + C++Q+S + I+ + + L + ++ K+ H Sbjct: 254 IAVDLEHHDFYSYQGFTCLMQISTREEDF-IVDCLKLRSSMGALAPVFLNPSILKVLHGA 312 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI L F + V +F T +A +T + L + + ++K Q++DW Sbjct: 313 REDIRWLQKDFSLYVVNLFDTGVA---LQTLHMPYSLAFAVDHFCQVKLNKKYQTADWRV 369 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179 LS E + YA D L + + L GR+ + Sbjct: 370 RPLSAEMVHYARQDTHFLLYVHDRLKALLLNSEGRASI 407 >gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis] Length = 329 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 3/159 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R A+D E C+VQ+S + + L D Sbjct: 88 LRTCKEFALDLEHHSYRSFLGLTCLVQISTRTEDFILDALELRGDLY-VLNETFTDPAII 146 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L FG+ + VF T A+R +H L LK ++ +K Q Sbjct: 147 KVLHGADSDVEWLQRDFGLYLVNVFDTHQAARQLSLG--RHSLDHLLKLYCNVDANKQYQ 204 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +DW L +E L YA D +L + + +L G Sbjct: 205 LADWRIRPLPEEMLNYARDDTHYLLYIYDRVRTELWERG 243 >gi|290982318|ref|XP_002673877.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria gruberi] gi|284087464|gb|EFC41133.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria gruberi] Length = 956 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 3/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 DA A+D E + +C++Q+S I + Q + L K Sbjct: 358 LEGQDAFAIDLEQHSYRSFQGFVCLMQISTRSEDFLIDTLELRQ-HMHILNSSFTHPKIV 416 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L F + +F T A R L LK GI+ K Q Sbjct: 417 KVMHGSDCDILWLQRDFAIYCVNLFDTGQACRTLA--LPGCSLAYLLKHYCGIDADKKYQ 474 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +DW L E ++YA D +L + + + + Sbjct: 475 LADWRVRPLPSEMVKYAREDTHYLLYIYDRLRQDI 509 >gi|262370490|ref|ZP_06063816.1| ribonuclease D [Acinetobacter johnsonii SH046] gi|262314832|gb|EEY95873.1| ribonuclease D [Acinetobacter johnsonii SH046] Length = 380 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 87/212 (41%), Gaps = 10/212 (4%) Query: 1 MTTIRVHEGDIPAECAARYVDAI-AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + D+ + + +DTE + + +L + Q++ + + Sbjct: 1 MFQFIQQQQDLTPVLEKMDRNEVYGLDTEFIKVDTLWPKLGVFQINVENNVYLLD--GTT 58 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHG 118 + + ++ +FH DI ++++ + VF T++ + Q Sbjct: 59 LDLSEFWNKLFRAQQ--NVFHACSEDIDLIYHYAQHKTLNNVFDTQVGMSFL-GHGLQVS 115 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 ++ LK++L ++I K + S+W A LS QL YAA+DV++L L + ++L Sbjct: 116 YQNALKQMLDVDIDKGETRSNWLARPLSPAQLSYAANDVLYLMNLSEKVKQELDSKSLLH 175 Query: 179 LATSCCNFLMDRAELDL---LGWENVDIFSHS 207 A C L + L ++++ + HS Sbjct: 176 FALEDCQHLTQEIATETPLHLLYQDIGNYRHS 207 >gi|312066427|ref|XP_003136265.1| 3'-5' exonuclease [Loa loa] gi|307768577|gb|EFO27811.1| 3'-5' exonuclease [Loa loa] Length = 845 Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 3/151 (1%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 VD E C++Q+S I + L D K+FH Sbjct: 287 VDLEHNAQRSFLGLTCLMQISTRQTDYIIDPFPLWN-DMHILNEPFTDPNILKVFHGADS 345 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 DI L FG+ V +F T A R+ ++ + ++ + K Q +DW Sbjct: 346 DIVWLQRDFGIYVVNMFDTYKAMRVLNY--SKFSYQHLVQTCCNHTLDKKFQKADWRLRP 403 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L+ YA SD +L Q KL G Sbjct: 404 LTGAHKTYARSDTHYLLHCYDQLRIKLLDQG 434 >gi|146329754|ref|YP_001210006.1| ribonuclease D [Dichelobacter nodosus VCS1703A] gi|146233224|gb|ABQ14202.1| ribonuclease D [Dichelobacter nodosus VCS1703A] Length = 355 Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 6/165 (3%) Query: 26 DTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 D+E + +L +VQ+ +I + + ++ L ++ + H Sbjct: 25 DSEFVRERHYYPKLSLVQIMQPAWQKAQLIDMQ--SELCCSVWQQLAQQRAPVVIHAASQ 82 Query: 85 DIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 D+ L + G + +F T+I L + ++ LGI++ K++ SDW A Sbjct: 83 DLE-LMHLHGQLLPNMFRDTQIGFSLISPH-KAISYLGFVQHYLGIDLDKSETRSDWLAR 140 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 L++EQ QYAA+DV L LQRL R C L+ Sbjct: 141 PLTNEQCQYAANDVGLLLQAYPLLCADLQRLNRMHWWQEECQNLL 185 >gi|170575788|ref|XP_001893385.1| 3'-5' exonuclease family protein [Brugia malayi] gi|158600662|gb|EDP37784.1| 3'-5' exonuclease family protein [Brugia malayi] Length = 847 Score = 148 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 3/147 (2%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 VD E C++Q+S I + L D K+FH Sbjct: 290 VDLEHNAQRSFLGLTCLMQISTRQMDYIIDPFPLWN-DMHILNEPFTDPNILKVFHGADS 348 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 DI L FG+ V +F T A R+ ++ + ++ + K Q +DW Sbjct: 349 DIVWLQRDFGIYVVNMFDTYKAMRVLN--FSKFSYQHLVQTCCNHTLDKKFQKADWRLRP 406 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKL 171 L+ YA SD +L Q ++L Sbjct: 407 LTIAHKTYARSDTHYLLHCYDQLRKRL 433 >gi|169767462|ref|XP_001818202.1| exosome complex exonuclease Rrp6 [Aspergillus oryzae RIB40] gi|83766057|dbj|BAE56200.1| unnamed protein product [Aspergillus oryzae] Length = 760 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + + + ++Q+S D + + ++ L + D Sbjct: 236 LKSAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVFADPSIL 295 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ V +F T A+ + LK L++ + K Q Sbjct: 296 KVFHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLQKFVNFEADKRYQ 353 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW + + YA SD +L + +L Sbjct: 354 MADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNELIE 390 >gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 524 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 2/139 (1%) Query: 40 CIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 C++Q+S I + L + D + K+ H DI L F V V Sbjct: 4 CLMQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWLQRDFRVYVCN 63 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 +F T ASR+ ++ L+ L G+ +K Q++DW + LSDE ++YA D + Sbjct: 64 LFDTGQASRVL--QMERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTHY 121 Query: 160 LHALRLQFTEKLQRLGRSD 178 L + +LQR S+ Sbjct: 122 LLYIYDLMRLRLQRESTSE 140 >gi|270007326|gb|EFA03774.1| hypothetical protein TcasGA2_TC013885 [Tribolium castaneum] Length = 890 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 5/170 (2%) Query: 4 IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I + + + E R+ +VD E C++Q+S D I +A + Sbjct: 257 IEIDKAEQLDELVETLRHCKEFSVDVEHHSYRSFMGITCLIQISTEDKDYLIDALAL-RD 315 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + KIFH DI L + V +F T A++ + L Sbjct: 316 KLSILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMFDTHQAAKALQY--PALSLAF 373 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +K+ + +K Q +DW L DE YA D +L + +L Sbjct: 374 LMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYIYKMMKREL 423 >gi|320588480|gb|EFX00949.1| exosome complex exonuclease [Grosmannia clavigera kw1407] Length = 1631 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 61/171 (35%), Gaps = 2/171 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + EG R D IAVD E L ++Q+S + + + + Sbjct: 231 VDTFEGVQAMLEELRQADVIAVDLEHHDFRTYTGLLSLMQISTREKDWVVDTLTPWRHRL 290 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D + K+FH DI L G+ + +F T A L L Sbjct: 291 EILNEVFADPTKIKVFHGATSDIVWLQRDLGLYIVGLFDTYFACDCLEYPAR--SLAYLL 348 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K+ + + K Q +DW L +E L YA SD L + +L Sbjct: 349 KKFVDFDADKKYQMADWRIRPLPEEMLYYARSDTHFLLYVYDMVRNELAEK 399 >gi|296419821|ref|XP_002839490.1| hypothetical protein [Tuber melanosporum Mel28] gi|295635651|emb|CAZ83681.1| unnamed protein product [Tuber melanosporum] Length = 838 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 3/161 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R IAVD E C++QLS D + + + P L + + + K Sbjct: 254 RRCTEIAVDLEHHDTRTYIGLTCLMQLSTRDDDYIVDTLKLRGQLEP-LNEIFTNPRVIK 312 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + H DI L G+ + +F T A++ + GL LK+ + + K Q Sbjct: 313 VLHGAFMDIIWLQRDLGLYIVGLFDTFYAAQALE--FARFGLAHILKKYVNFDADKQYQM 370 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +DW L E L YA SD +L L R D Sbjct: 371 ADWRLRPLPKEMLDYARSDTHYLLYCFDCMRNSLVEKSRGD 411 >gi|156542538|ref|XP_001599044.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 1138 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 3/156 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + IAVD E + C++Q+S D I + + L + Sbjct: 647 DLEKYNEIAVDLEHHSYRSFQGITCLMQISTKDTDYLIDTLTL-RSELHVLNEIFTKPSI 705 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L G+ + +F T A++ + L LK I+ +K Sbjct: 706 LKVFHGADSDILWLQRDLGLYIVNMFDTYQAAK--QLGLPFLSLSYLLKTHCEISANKHF 763 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 Q +DW L +E ++YA D +L ++ + L Sbjct: 764 QLADWRIRPLPEELMKYAREDTHYLLYIKDILSNAL 799 >gi|85094529|ref|XP_959900.1| hypothetical protein NCU02256 [Neurospora crassa OR74A] gi|28921357|gb|EAA30664.1| hypothetical protein NCU02256 [Neurospora crassa OR74A] gi|40804632|emb|CAF05892.1| related to nucleolar 100K polymyositis-scleroderma protein [Neurospora crassa] Length = 822 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 2/170 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +EG + + IA+D E L ++Q+S + I + + Sbjct: 231 VDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDTLQPWRHKL 290 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + + K+ H D+ L G+ V +F T A + G L Sbjct: 291 EVLNEVFANPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDTYHACAVLGYPGRSLGY--LL 348 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + K Q +DW L +E YA SD +L + +L Sbjct: 349 SKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFDMIINELVE 398 >gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] Length = 341 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 2/152 (1%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 VD E + C++Q+S + + +L + +D ++K+ H Sbjct: 16 VDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADR 75 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 DI L FG+ + +F T ASR+ + ++ L+ L+ G+ +K Q++DW A Sbjct: 76 DIVWLQRDFGIYICNMFDTGQASRVLKM--ERYSLQHLLQHFCGVTANKEYQNADWRARP 133 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L D ++Y D +L + KL L + Sbjct: 134 LPDVMIKYGREDTHYLLYIYDLMRIKLFELSK 165 >gi|255934162|ref|XP_002558362.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255] gi|211582981|emb|CAP81189.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255] Length = 756 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 2/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + + ++Q+S D + + +++ L + D K Sbjct: 238 LKQAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLQPWREDLQMLNEVFADPKIL 297 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ V +F T A+ + LK L + + K Q Sbjct: 298 KVLHGSTMDIIWLQRDLGLYVVGMFDTFHAASALG--FPKRSLKFLLSKFVNFEADKRYQ 355 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++DW A L YA SD +L + + L Sbjct: 356 TADWRARPLPPAMFDYARSDTHYLLYIYDRLRNDL 390 >gi|121705450|ref|XP_001270988.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus NRRL 1] gi|119399134|gb|EAW09562.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus NRRL 1] Length = 778 Score = 147 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 2/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + + ++Q+S D + + +++ L + D Sbjct: 246 LKSAKEIAIDLEHHDMHSYHGLVSLMQISTRDKDWVVDTLKPWREDLQILNDVFADPAIL 305 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ V +F T A+ + LK L++ + K Q Sbjct: 306 KVLHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLQKFVNFEADKRYQ 363 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +DW L YA SD +L + +L Sbjct: 364 MADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNEL 398 >gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5] gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5] Length = 574 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 30/201 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + +DTET G DR+ +VQ+ + T +I + Q P L ++ + Sbjct: 19 LENSPYLYLDTETTG-----DRIRLVQIGDEENT-YVIDLYEIQDIEP-LRKLINERGI- 70 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 + H +FD+ L+ G+ F T IAS L +H L + LLG ++ K+ Q Sbjct: 71 -VGHNLKFDLKYLYRY-GIFPSATFDTMIASYLLGY--ERHSLNHIVSNLLGYSMDKSYQ 126 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG------------------RSD 178 +SDW A LSD QL+YAA+DV+ L L + + L L +S Sbjct: 127 TSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELDAERGEELLKTRTAKIFDLKSP 186 Query: 179 LATSCCNFLMDRAELDLLGWE 199 +A F+ + A+L++ G+ Sbjct: 187 VAIVEMAFVREVAKLEINGFP 207 >gi|240254568|ref|NP_850189.5| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana] Length = 891 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 4/162 (2%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 AE A+ AVDTE L ++Q+S + + IA L + D Sbjct: 132 AEILAKEQ-VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIAL-HDVMSILRPVFSD 189 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+FH D+ L F + V +F T A + Q L L+ + G+ + Sbjct: 190 PNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 247 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q DW LS+E ++YA +D +L + T +L++L Sbjct: 248 KLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQL 289 >gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana] Length = 892 Score = 147 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 4/162 (2%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 AE A+ AVDTE L ++Q+S + + IA L + D Sbjct: 132 AEILAKEQ-VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIAL-HDVMSILRPVFSD 189 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+FH D+ L F + V +F T A + Q L L+ + G+ + Sbjct: 190 PNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 247 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q DW LS+E ++YA +D +L + T +L++L Sbjct: 248 KLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQL 289 >gi|332024515|gb|EGI64713.1| Exosome component 10 [Acromyrmex echinatior] Length = 885 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 10/180 (5%) Query: 10 DIPAEC-----AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D PA+ R IAVD E + C++Q+S I ++ + Sbjct: 268 DKPADINILLEDLRNHKEIAVDLEHHSYRTFQGITCLMQISTIQTDYLIDTLSL-RSELY 326 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + K+FH DI L + V +F T A++ L L Sbjct: 327 QLNEIFTKPSILKVFHGADMDILWLQRDLSLYVVNMFDTHQAAKQLN--LPYLSLAYLLN 384 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDLATS 182 + GI+ +K Q +DW L E ++YA D +L ++ +L G+S++ + Sbjct: 385 KYCGIDPNKHFQLADWRIRPLPLELMKYAREDTHYLLYVKDMLKNELIDAANGKSNILKA 444 >gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana] Length = 872 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 4/162 (2%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 AE A+ AVDTE L ++Q+S + + IA L + D Sbjct: 132 AEILAKEQ-VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIAL-HDVMSILRPVFSD 189 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+FH D+ L F + V +F T A + Q L L+ + G+ + Sbjct: 190 PNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 247 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q DW LS+E ++YA +D +L + T +L++L Sbjct: 248 KLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQL 289 >gi|261327471|emb|CBH10446.1| ribosomal RNA processing protein 6, putative [Trypanosoma brucei gambiense DAL972] Length = 738 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 9/172 (5%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAG 59 T D+ A A IAVD E + C++Q+S D VD +++ A Sbjct: 247 TFVDTVEDLEAVVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRAN 306 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + + + K+FH R D+ L FG+ + +F T IA + H L Sbjct: 307 MYL---MAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSL 360 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + ++K Q++DW + E + YA D L + + + L Sbjct: 361 AFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQLL 412 >gi|145252306|ref|XP_001397666.1| exosome complex exonuclease Rrp6 [Aspergillus niger CBS 513.88] gi|134083214|emb|CAK42852.1| unnamed protein product [Aspergillus niger] Length = 782 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 2/162 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + + + ++Q+S D + + ++ L + D Sbjct: 244 LKAAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQVLNEVFTDPNIL 303 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ V +F T A+ + LK L++ + K Q Sbjct: 304 KVLHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLQKFVNFEADKRYQ 361 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +DW + + YA SD +L + +L D Sbjct: 362 MADWRIRPIPEGMFDYARSDTHYLLHIYDHIRNELVENSLPD 403 >gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga] gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva] Length = 1786 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 17/197 (8%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------------ 65 + A+ VD ET GL +++ +VQLS + II + N P+ Sbjct: 1217 KDPKAVGVDIETTGLDHNTNQIRLVQLSVPNQPSLIIDLFKLSTNNPDAESVVPGRNELI 1276 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLK 120 L + ++ K+FH G+FDI L P+F T +AS+L L Sbjct: 1277 KCEWLKKLFKSKETVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASKLLVASRYISCKLT 1336 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + L I + K QQ SDWS L +EQL Y+A D L L + L+ SD+A Sbjct: 1337 HVSERYLNIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLYVILEHLLKINNLSDIA 1396 Query: 181 TSCCNFLMDRAELDLLG 197 + ++ ++++L G Sbjct: 1397 SVENKCILATSDMELNG 1413 >gi|167392672|ref|XP_001740248.1| exosome complex exonuclease RRP6 [Entamoeba dispar SAW760] gi|165895708|gb|EDR23337.1| exosome complex exonuclease RRP6, putative [Entamoeba dispar SAW760] Length = 517 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + +V+ AVD E +C++Q+S I I + + L + Sbjct: 202 SLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYIIDTITL-RDSITLLNDPFTNPNI 260 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 EK+FH FD+ L Y FG+ V + +R + LK L++ ++ K Sbjct: 261 EKVFHGCDFDMIWLSYNFGLYVVNCIDSGQCARALKLQH--FSLKYLLQKYCNVDADKKY 318 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 Q +DW L+ E ++YA D +L + Q + +G + + N L R Sbjct: 319 QLADWRLRPLTKEMIEYARGDTHYLLYIIDQLRNECIDVGILEEVLNKSNELCLR 373 >gi|222637126|gb|EEE67258.1| hypothetical protein OsJ_24424 [Oryza sativa Japonica Group] Length = 949 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 6/170 (3%) Query: 8 EGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E D E AR +D A AVDTE L ++Q+S I IA Sbjct: 149 ETDAQLEDLARLLDDEKAFAVDTEQHSLRSFLGYTALMQISTQKADYLIDTIAL-HDVMS 207 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + + KIFH D+ L F + V +F T A + Q L L+ Sbjct: 208 ILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQKSLAYLLE 265 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 G+ K Q DW L+ E +QYA D +L + +L Sbjct: 266 LYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAK 315 >gi|218199707|gb|EEC82134.1| hypothetical protein OsI_26176 [Oryza sativa Indica Group] Length = 949 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 6/170 (3%) Query: 8 EGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E D E AR +D A AVDTE L ++Q+S I IA Sbjct: 149 ETDAQLEDLARLLDDEKAFAVDTEQHSLRSFLGYTALMQISTQKADYLIDTIAL-HDVMS 207 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + + KIFH D+ L F + V +F T A + Q L L+ Sbjct: 208 ILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQKSLAYLLE 265 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 G+ K Q DW L+ E +QYA D +L + +L Sbjct: 266 LYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAK 315 >gi|72387778|ref|XP_844313.1| ribosomal RNA processing protein 6 [Trypanosoma brucei TREU927] gi|62359465|gb|AAX79902.1| ribosomal RNA processing protein 6 [Trypanosoma brucei] gi|70800846|gb|AAZ10754.1| ribosomal RNA processing protein 6 [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 736 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 9/172 (5%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAG 59 T D+ A A IAVD E + C++Q+S D VD +++ A Sbjct: 247 TFVDTVEDLEALVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRAN 306 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + + + K+FH R D+ L FG+ + +F T IA + H L Sbjct: 307 MYL---MAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSL 360 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + ++K Q++DW + E + YA D L + + + L Sbjct: 361 AFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQLL 412 >gi|14250912|emb|CAC39261.1| Rrp6p homologue [Trypanosoma brucei] Length = 703 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 9/172 (5%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAG 59 T D+ A A IAVD E + C++Q+S D VD +++ A Sbjct: 214 TFVDTVEDLEALVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRAN 273 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + + + K+FH R D+ L FG+ + +F T IA + H L Sbjct: 274 MYL---MAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSL 327 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + ++K Q++DW + E + YA D L + + + L Sbjct: 328 AFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQLL 379 >gi|183231928|ref|XP_650756.2| exosome component 10 [Entamoeba histolytica HM-1:IMSS] gi|169802269|gb|EAL45368.2| exosome component 10, putative [Entamoeba histolytica HM-1:IMSS] Length = 517 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 3/176 (1%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 + +V+ AVD E +C++Q+S I I + + L + Sbjct: 201 VSLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYIIDTITL-RDSITLLNDPFTNPN 259 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 EK+FH FD+ L Y FG+ V + +R + LK L++ ++ K Sbjct: 260 IEKVFHGCDFDMIWLSYNFGLYVVNCIDSGQCARALKLQH--FSLKYLLQKYCNVDADKK 317 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 Q +DW L+ E ++YA D +L + Q + G + + N L R Sbjct: 318 YQLADWRLRPLTKEMIEYARGDTHYLLYIIDQLRNECIDAGVLEEVLNKSNELCLR 373 >gi|126667419|ref|ZP_01738391.1| ribonuclease D [Marinobacter sp. ELB17] gi|126628175|gb|EAZ98800.1| ribonuclease D [Marinobacter sp. ELB17] Length = 382 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 4/187 (2%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 + AA+ + + +DTE + +VQL D + + + Sbjct: 25 EQLDDWLAAQPTEPLTLDTEFERVSTYYPIPGLVQLGLADQFRLVDP--EVAEASAGFRA 82 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D +R K+ + D+ + + G+ ++ V ++ G ++ L G Sbjct: 83 ALEDAQRPKLLYAVSEDLELFRHWLGIPMQGVIDLQLGVAFA-GLGFSMGYAKLVESLFG 141 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFL 187 ++ K SDW + LSD Q +YA DV L + E L G + L F Sbjct: 142 ESLDKTLTRSDWISRPLSDVQQRYAIDDVRFLKPIYDWLQEVLAERGLQQALVEESARFA 201 Query: 188 MDRAELD 194 D A D Sbjct: 202 ADLASQD 208 >gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis] Length = 680 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 4/164 (2%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 A D A+D E C+VQLS G I +A Q + L +L Sbjct: 127 AAAMELYEQDRTALDVEHHSTHTYSGLTCLVQLSTGSKDYLIDSLALRQ-DMHLLAPVLS 185 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + + K+ H G D L FG+ + VF T+ A ++ + Q L L+ GI Sbjct: 186 NPRICKVIHGGGNDAVWLQRDFGLFLVNVFDTEKACQVLGYH--QRSLGALLQRFCGIQA 243 Query: 132 SKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K+ Q +DW LS E + YA DV HL + + +L Sbjct: 244 DKSLGQRADWRRRPLSAELIDYARRDVQHLLTIADRLGHELLAE 287 >gi|315054289|ref|XP_003176519.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893] gi|311338365|gb|EFQ97567.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893] Length = 827 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 2/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + + + + L + D Sbjct: 267 LKQAKEIAVDLEHHDGHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQILNEVFADPSIV 326 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + + LK L E +G + K Q Sbjct: 327 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASVL--QLPKKSLKFLLHEYVGFDADKKYQ 384 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++DW L L YA SD L + + +L Sbjct: 385 TADWRIRPLLTGMLDYARSDTHFLLYIFDRLRNEL 419 >gi|154336623|ref|XP_001564547.1| exosome subunit rrp6p homologue [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061582|emb|CAM38612.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis MHOM/BR/75/M2904] Length = 735 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 5/158 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IAVD E + C++Q+S + I+ + L + ++ K+ Sbjct: 252 SSEIAVDLEHHDFYSYQGITCLMQISTREEDF-IVDCLQLRSLMGTLAPVFLNPLILKVL 310 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H R DI L F + + F T +A +T + L + + ++K Q++D Sbjct: 311 HGAREDIRWLQKDFSLYLVNFFDTGVA---LQTLHMPYSLAFAVDHFCQVKLNKKFQTAD 367 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGR 176 W LS E + YA D L + + L GR Sbjct: 368 WRVRPLSAEMVHYARQDTHFLLYVYDRLKALLLNSEGR 405 >gi|294790936|ref|ZP_06756094.1| putative ribonuclease D [Scardovia inopinata F0304] gi|294458833|gb|EFG27186.1| putative ribonuclease D [Scardovia inopinata F0304] Length = 433 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 8/177 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNA--PNLVGMLVDE 73 A +A D E + +VQ G G + +A +K A + L D Sbjct: 29 ASASGPLAADAERASGYRYSQQDWLVQFKRQGAGIALVDPVAVAEKGAQWEDFNQALGDT 88 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 E I H D+ +Y G+R +F T+ A+RL GL ++ LG+ ++K Sbjct: 89 --EWIIHDSLQDLPG-YYALGMRPSRLFDTERAARLLGN--AHFGLAAVTEKYLGLTLAK 143 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++DWS L+ + YAA DV L LR + +L+R G+ + A FL+ + Sbjct: 144 EHSAADWSYRPLNRDMRNYAALDVEVLIELRNTLSAELRRSGKEEWAQEDFAFLLKK 200 >gi|116203503|ref|XP_001227562.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51] gi|88175763|gb|EAQ83231.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51] Length = 827 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 2/171 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +EG + + IA+D E L ++Q+S + I + + Sbjct: 230 VDTYEGVLEMLEELKKAPEIAIDLEHHDFRSYTGLLSLMQISTREKDWIIDTLVPWRHKL 289 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D K K+ H DI L G+ V +F T AS + L L Sbjct: 290 EVLNEVFADPKIVKVLHGAFMDIIWLQRDLGLYVVGLFDTFYASTALQYAGK--SLAFLL 347 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K+ + + K Q +DW L +E YA SD L + +L +L Sbjct: 348 KKFVDFDADKKYQLADWRLRPLPEEMFYYARSDTHFLLYIYDMLRNELAQL 398 >gi|41582248|gb|AAR37708.2| ribonuclease D, putative [uncultured marine bacterium 441] Length = 177 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+DTE + LC++Q++ D I ++ N L L +K + I H Sbjct: 34 LAIDTEFRRVDSYLPELCLIQIATKDKLECIDVLS--LDNLDPLFVKLYGKKTKWIAHSA 91 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 R DI L+ +F T+IA+ Y Q ++ + L + + K DW Sbjct: 92 RQDIEALYSLSNQIPSAIFDTQIAASFLN-YPLQISYQNLTESLENVRLEKKFTRFDWKK 150 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFT 168 L + LQYA DV +L + + + Sbjct: 151 RPLPADVLQYAIDDVKYLIPIHNKLS 176 >gi|311694773|gb|ADP97646.1| ribonuclease D [marine bacterium HP15] Length = 385 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 7/192 (3%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 + +A+DTE + +VQL DG ++ + +++ +L Sbjct: 29 LDKWLDRAPGKPLALDTEFERVNTFYPIPGLVQLGL-DGEFCLVDPSVAEQSG-RFREVL 86 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D K+ + D+ + ++ V +I + + G ++ L G Sbjct: 87 ADPDTPKLLYAMSEDLELFRQWLNLQPAGVIDLQIGAAMAGAGF-SLGYARLVETLFGET 145 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + K+ SDW A LSD Q +YA D+ L + + L+ G R Sbjct: 146 LDKSATRSDWLARPLSDAQQRYAIDDIRFLEPMYHWVSALLRDRGLEAALVEESA----R 201 Query: 191 AELDLLGWENVD 202 +L G E+ D Sbjct: 202 FANELAGQEDPD 213 >gi|125773943|ref|XP_001358230.1| GA20243 [Drosophila pseudoobscura pseudoobscura] gi|54637966|gb|EAL27368.1| GA20243 [Drosophila pseudoobscura pseudoobscura] Length = 905 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IA+D E C+VQ+S I A ++ L +L D K+ Sbjct: 293 LRRAPHIAIDVEHHSYRTFMGITCLVQMSTRTKD-YIFDSLALREEMHVLNLVLTDPKKV 351 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI L + V +F T A++ + L LK + +++ K+ Q Sbjct: 352 KILHGADQDIEWLQRDLSLYVVNMFDTHRAAKALNM--ARLSLAFLLKHYVDLDVDKSLQ 409 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW L + + YA D +L + + T L + Sbjct: 410 LADWRMRPLPQQLIDYARQDTHYLIYVYERMTNDLLQA 447 >gi|258566335|ref|XP_002583912.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237907613|gb|EEP82014.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 635 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 7/171 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + I +D E +C++Q+S D + + ++ L + + + Sbjct: 243 LKCAKEIGIDLEHHDTHSYYGLVCLMQISTRDKDWIVDTLLPWREELQILNEVFANPQIV 302 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + LK L + + K Q Sbjct: 303 KVLHGSSMDVIWLQRDLGLYLVGLFDTYHAAAALHY--PKKSLKFLLDKFVNFQAEKKYQ 360 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR-----LGRSDLATS 182 +DW L YA SD +L + +L D Sbjct: 361 IADWRVRPLLPGMFDYARSDTHYLLYIYDHLRNELIERSTPGENLIDYVQE 411 >gi|50085406|ref|YP_046916.1| ribonuclease D, processes tRNA [Acinetobacter sp. ADP1] gi|49531382|emb|CAG69094.1| ribonuclease D, processes tRNA [Acinetobacter sp. ADP1] Length = 398 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 7/196 (3%) Query: 1 MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + + + +DTE + + +L + Q+ +G V ++ Sbjct: 19 MFQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQI-NLNGQVYLLD--GT 75 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHG 118 + L ++ +FH DI ++++ + VF T++ + Q Sbjct: 76 ALDLSIFWQKLY-ASKQNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFL-GHGLQVS 133 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + LK +L I I K Q SDW A LSDEQL+YAA+DV++L L Q +LQ D Sbjct: 134 YQAALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYD 193 Query: 179 LATSCCNFLMDRAELD 194 C L D Sbjct: 194 YVLEDCRHLTQEIGTD 209 >gi|302306959|ref|NP_983403.2| ACL001Cp [Ashbya gossypii ATCC 10895] gi|299788769|gb|AAS51227.2| ACL001Cp [Ashbya gossypii ATCC 10895] Length = 745 Score = 145 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 3/161 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + V +AVD E +C++Q+S + IA + + L + D Sbjct: 229 LKEVKELAVDLEHHDYRSYYGIVCLMQISSRSKDWLVDTIAL-RDDLHVLNVIFTDPTVV 287 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH D+ L G+ V +F T ASR +H L L+ SK Q Sbjct: 288 KVFHGAFMDMIWLQRDLGLYVVSLFDTYHASRALG--FPKHSLAYLLETFAKFKTSKKYQ 345 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +DW L YA SD L ++ L + G+ Sbjct: 346 LADWRVRPLPKPLRDYARSDTHFLLSIYDDLRNALVKAGKL 386 >gi|323258057|gb|EGA41735.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 125 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 4/124 (3%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + + + C A R AIA+DTE + +L ++QL G I + G + Sbjct: 4 TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K H G D+ V FG P+ T+I + G ++E Sbjct: 62 LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120 Query: 126 LLGI 129 G+ Sbjct: 121 YTGV 124 >gi|67537662|ref|XP_662605.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4] gi|40741889|gb|EAA61079.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4] gi|259482125|tpe|CBF76306.1| TPA: exosome complex exonuclease Rrp6, putative (Eurofung) [Aspergillus nidulans FGSC A4] Length = 1297 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 2/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + + ++Q+S + + + ++ L + D Sbjct: 246 LKSAREIAIDLEHHDVHSYHGLVSLMQISTREKDWVVDTLKPWREELQMLNEVFADPNIL 305 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ V +F T A+ + LK L + + K Q Sbjct: 306 KLFHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKKSLKYLLHKFVNFEADKQYQ 363 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +DW L YA SD +L + +L Sbjct: 364 MADWRIRPLPSGMFNYARSDTHYLLYIYDNLRNEL 398 >gi|119491955|ref|XP_001263472.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri NRRL 181] gi|119411632|gb|EAW21575.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri NRRL 181] Length = 765 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 2/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + + ++Q+S D + + ++ L + D Sbjct: 241 LKSAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLKPWREELQILNEVFADPGIL 300 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ V +F T A+ + LK L++ + K Q Sbjct: 301 KVLHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLQKFVNFEADKRYQ 358 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +DW L YA SD +L + +L Sbjct: 359 MADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNEL 393 >gi|119511988|ref|ZP_01631084.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414] gi|119463339|gb|EAW44280.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414] Length = 871 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQ-LSPGDGTVDIIRIAAGQKNAPNLVG-----MLVDE 73 + +DTE RL ++Q L+ + + + P+L ++++ Sbjct: 20 HKTLWLDTEIADFTTHYPRLSLIQVLADPTDSTGVSAYLLDVLDKPDLAEYFINQIMINP 79 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLK--DNLKELLG-I 129 EK+FH FD+ L + + CT +IA ++TR LK EL + Sbjct: 80 NIEKVFHNAGFDLKYL---GKKLAQNITCTYQIARKITRDRLKVSNLKLKTLAAELCHFV 136 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 N+ + SSDW LSD+Q++YAA D V+L A+ + E Sbjct: 137 NVDADEGSSDWGKRPLSDKQVKYAAMDTVYLAAVHRKLLE 176 >gi|238484333|ref|XP_002373405.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus NRRL3357] gi|220701455|gb|EED57793.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus NRRL3357] Length = 434 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + + + ++Q+S D + + ++ L + D Sbjct: 236 LKSAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVFADPSIL 295 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L G+ V +F T A+ + LK L++ + K Q Sbjct: 296 KVFHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLQKFVNFEADKRYQ 353 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW + + YA SD +L + +L Sbjct: 354 MADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNELIE 390 >gi|189096244|pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium Adolescentis Length = 440 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 8/174 (4%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLVD 72 A ++A D E +VQ G G + +AA + + + D Sbjct: 34 LASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGD 93 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 I H D+ G+ + +F T+IA+RL + GL + LG+ ++ Sbjct: 94 A--VWILHDSLQDLPGF-DELGMEPQRLFDTEIAARLLG--LKRFGLAAVTEHFLGLTLA 148 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 K ++DWS L + YAA DV L L + +L+R G+ + A ++ Sbjct: 149 KEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDY 202 >gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata] gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata] Length = 1786 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 54/197 (27%), Positives = 84/197 (42%), Gaps = 17/197 (8%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------------ 65 + A+ VD ET GL +++ +VQLS + II + N P Sbjct: 1217 KDPKAVGVDIETTGLDHNTNQIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVVPGRNELI 1276 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLK 120 L + + K+FH G+FDI L P+F T +AS+L L Sbjct: 1277 KCEWLKNLFKSKDTVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASKLLVASRYISCKLT 1336 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + L I + K QQ SDWS L +EQL Y+A D L L + L+ +D+A Sbjct: 1337 HVSERYLNIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLYVILEHLLKINNLADIA 1396 Query: 181 TSCCNFLMDRAELDLLG 197 + ++ ++++L G Sbjct: 1397 SVENKCILATSDMELNG 1413 >gi|119026007|ref|YP_909852.1| hypothetical protein BAD_0989 [Bifidobacterium adolescentis ATCC 15703] gi|118765591|dbj|BAF39770.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 431 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 8/174 (4%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLVD 72 A ++A D E +VQ G G + +AA + + + D Sbjct: 32 LASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGD 91 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 I H D+ G+ + +F T+IA+RL + GL + LG+ ++ Sbjct: 92 A--VWILHDSLQDLPGF-DELGMEPQRLFDTEIAARLLG--LKRFGLAAVTEHFLGLTLA 146 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 K ++DWS L + YAA DV L L + +L+R G+ + A ++ Sbjct: 147 KEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDY 200 >gi|302501205|ref|XP_003012595.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae CBS 112371] gi|291176154|gb|EFE31955.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae CBS 112371] Length = 1069 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 2/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + + + + L + D Sbjct: 446 LKQAKEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 505 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + LK L E +G + K Q Sbjct: 506 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQ 563 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 ++DW L L YA SD L + + +L L Sbjct: 564 TADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLEL 601 >gi|195037619|ref|XP_001990258.1| GH19240 [Drosophila grimshawi] gi|193894454|gb|EDV93320.1| GH19240 [Drosophila grimshawi] Length = 911 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A R IA+D E C+VQ+S I + + L +L D Sbjct: 294 ALAELRLAHQIAIDVEHHSYRTFMGITCLVQMSTRTKD-YIFDTLILRDDMHILNLVLTD 352 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K KI H G DI L + + +F T A++ + L LK L +++ Sbjct: 353 PKVLKILHGGDLDIEWLQRDLSLYIVNMFDTHRAAKALN--LARLSLAFLLKFYLDMDVD 410 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 K+ Q +DW L + + YA D +L + + L Sbjct: 411 KSLQLADWRMRPLPQKLIDYARQDTHYLIYIYERLVNDL 449 >gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp. lyrata] gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp. lyrata] Length = 891 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 4/162 (2%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 AE A+ AVDTE L ++Q+S + + I L + + Sbjct: 131 AEILAKE-KVFAVDTEQHSLRSFLGFTALIQISTHEKDFLVDTI-VLHDAMSILRPVFSE 188 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+FH D+ L F + V +F T A + Q L L+ + G+ + Sbjct: 189 PNICKVFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 246 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q DW LS+E ++YA +D +L + T +L++L Sbjct: 247 KLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTAELKQL 288 >gi|154488712|ref|ZP_02029561.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis L2-32] gi|154082849|gb|EDN81894.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis L2-32] Length = 431 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 8/174 (4%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLVD 72 A ++A D E +VQ G G + +AA + + + D Sbjct: 32 LASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGD 91 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 I H D+ G+ + +F T+IA+RL + GL + LG+ ++ Sbjct: 92 A--VWILHDSLQDLPGF-DELGMEPQRLFDTEIAARLLG--LKRFGLAAVTEHFLGLTLA 146 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 K ++DWS L + YAA DV L L + +L+R G+ + A ++ Sbjct: 147 KEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDY 200 >gi|195143871|ref|XP_002012920.1| GL23665 [Drosophila persimilis] gi|194101863|gb|EDW23906.1| GL23665 [Drosophila persimilis] Length = 903 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 4/159 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IA+D E C+VQ+S I A ++ L +L D K+ Sbjct: 293 LRRAPHIAIDVEHHSYRTFMGITCLVQMSTRTKD-YIFDSLALREEMHVLNLVLTDPKKV 351 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI L + V +F T A++ + L LK + +++ K+ Q Sbjct: 352 KILHGADQDIEWLQRDLSLYVVNMFDTHRAAKALNM--ARLSLAFLLKHYVDLDVDKSLQ 409 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQF-TEKLQRL 174 +DW L + + YA D +L + + + LQ Sbjct: 410 LADWRMRPLPQQLIDYARQDTHYLIYVYERMTNDILQAE 448 >gi|326473059|gb|EGD97068.1| hypothetical protein TESG_04488 [Trichophyton tonsurans CBS 112818] Length = 898 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 2/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + + IAVD E +C++Q+S + + + + L + D Sbjct: 249 LKQAEEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 308 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + LK L E +G + K Q Sbjct: 309 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQ 366 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++DW L L YA SD L + + +L Sbjct: 367 TADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQL 401 >gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana] Length = 327 Score = 144 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 4/162 (2%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 AE A+ AVDTE L ++Q+S + + IA L + D Sbjct: 132 AEILAKEQ-VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIAL-HDVMSILRPVFSD 189 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+FH D+ L F + V +F T A + Q L L+ + G+ + Sbjct: 190 PNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 247 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q DW LS+E ++YA D +L + T +L++L Sbjct: 248 KLLQREDWRQRPLSEEMVRYARXDAHYLLYIADSLTTELKQL 289 >gi|190344443|gb|EDK36119.2| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC 6260] Length = 755 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 62/170 (36%), Gaps = 4/170 (2%) Query: 7 HEGDIPA-ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 E D+ IAVD E +C++Q+S + II + + Sbjct: 230 TESDLSQMVSDLSSQTEIAVDLEHHDYRSYLGIVCLMQISSREKD-WIIDTLKLRDSLVV 288 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L + + K+FH DI L G+ V +F T AS+ + L L+ Sbjct: 289 LNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASKKLG--LPRFSLAYLLEN 346 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 SK Q +DW LS L YA SD L + Q +L G Sbjct: 347 YANFKTSKKYQLADWRMRPLSGPMLSYARSDTHFLLYVYDQLRNQLLSSG 396 >gi|159127645|gb|EDP52760.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus A1163] Length = 764 Score = 144 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 2/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + + ++Q+S D + + ++ L + D Sbjct: 241 LKSAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLKPWREELQILNEVFADPGIL 300 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ V +F T A+ + LK L + + K Q Sbjct: 301 KVLHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLHKFVNFEADKRYQ 358 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +DW L YA SD +L + +L Sbjct: 359 MADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNEL 393 >gi|70999828|ref|XP_754631.1| exosome complex exonuclease Rrp6 [Aspergillus fumigatus Af293] gi|66852268|gb|EAL92593.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus Af293] Length = 764 Score = 144 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 2/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + + ++Q+S D + + ++ L + D Sbjct: 241 LKSAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLKPWREELQILNEVFADPGIL 300 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ V +F T A+ + LK L + + K Q Sbjct: 301 KVLHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLHKFVNFEADKRYQ 358 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +DW L YA SD +L + +L Sbjct: 359 MADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNEL 393 >gi|328767973|gb|EGF78021.1| hypothetical protein BATDEDRAFT_27210 [Batrachochytrium dendrobatidis JAM81] Length = 826 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 3/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 V AVD E + C++Q+S + + + + L + + Sbjct: 264 LEGVTEFAVDLEHHDFRSYQGFTCLMQISTRTEDFLVDTL-ILRNSLHALNTSFANPQIV 322 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+FH DI L FGV V +F T AS H L LK + K Q Sbjct: 323 KVFHGAEMDIQWLQRDFGVYVVDLFDTYHASHALE--LEGHSLAFLLKYYCDVVTDKRYQ 380 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +DW L E + YA D +L + + +L Sbjct: 381 LADWRIRPLPKEMVHYARMDTHYLLYIFDRMRNEL 415 >gi|289178849|gb|ADC86095.1| Ribonuclease D [Bifidobacterium animalis subsp. lactis BB-12] Length = 440 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 8/168 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKI 78 +A D E ++Q G + IA ++ + + D E I Sbjct: 48 PLATDAERASGYRYGHEDWLIQFKRDGAPIALLDPIALDEQGVDWNAFNEAVGDA--EWI 105 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H R D+ G++ R +F T+IA++L + + GL LGI ++K ++ Sbjct: 106 LHDSRQDLPGFAQ-IGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEHSAA 162 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 DWS L + YAA DV L L T +L+R G+ + A ++ Sbjct: 163 DWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDY 210 >gi|327308500|ref|XP_003238941.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892] gi|326459197|gb|EGD84650.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892] Length = 867 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 2/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + + + + L + D Sbjct: 259 LKQAKEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 318 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + LK L E +G + K Q Sbjct: 319 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQ 376 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++DW L L YA SD L + + +L Sbjct: 377 TADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQL 411 >gi|219683452|ref|YP_002469835.1| ribonuclease D [Bifidobacterium animalis subsp. lactis AD011] gi|219621102|gb|ACL29259.1| putative ribonuclease D [Bifidobacterium animalis subsp. lactis AD011] Length = 430 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 8/168 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKI 78 +A D E ++Q G + IA ++ + + D E I Sbjct: 38 PLATDAERASGYRYGHEDWLIQFKRDGAPIALLDPIALDEQGVDWNAFNEAVGDA--EWI 95 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H R D+ G++ R +F T+IA++L + + GL LGI ++K ++ Sbjct: 96 LHDSRQDLPGFAQ-IGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEHSAA 152 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 DWS L + YAA DV L L T +L+R G+ + A ++ Sbjct: 153 DWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDY 200 >gi|183601395|ref|ZP_02962765.1| hypothetical protein BIFLAC_02027 [Bifidobacterium animalis subsp. lactis HN019] gi|241191105|ref|YP_002968499.1| hypothetical protein Balac_1081 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196511|ref|YP_002970066.1| hypothetical protein Balat_1081 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219001|gb|EDT89642.1| hypothetical protein BIFLAC_02027 [Bifidobacterium animalis subsp. lactis HN019] gi|240249497|gb|ACS46437.1| hypothetical protein Balac_1081 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251065|gb|ACS48004.1| hypothetical protein Balat_1081 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794094|gb|ADG33629.1| hypothetical protein BalV_1041 [Bifidobacterium animalis subsp. lactis V9] Length = 433 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 8/168 (4%) Query: 22 AIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKI 78 +A D E ++Q G + IA ++ + + D E I Sbjct: 41 PLATDAERASGYRYGHEDWLIQFKRDGAPIALLDPIALDEQGVDWNAFNEAVGDA--EWI 98 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 H R D+ G++ R +F T+IA++L + + GL LGI ++K ++ Sbjct: 99 LHDSRQDLPGFAQ-IGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEHSAA 155 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 DWS L + YAA DV L L T +L+R G+ + A ++ Sbjct: 156 DWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDY 203 >gi|112491261|pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Reveals An Interplay Between The Active Site And The Hrdc Domain gi|112491264|pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Reveals An Interplay Between The Active Site And The Hrdc Domain; Protein In Complex With Mn gi|112491267|pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Reveals An Interplay Between The Active Site And The Hrdc Domain; Protein In Complex With Mn, Zn, And Amp gi|112491277|pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Reveals An Interplay Between The Active Site And The Hrdc Domain; Protein In Complex With Mn, Zn, And Ump Length = 410 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 3/175 (1%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + IAVD E +C++Q+S + + + ++N L + + Sbjct: 102 DLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTL-KLRENLHILNEVFTNPSI 160 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH DI L G+ V +F T AS+ +H L L+ SK Sbjct: 161 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG--LPRHSLAYLLENFANFKTSKKY 218 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 Q +DW LS A +D L + Q KL + + R Sbjct: 219 QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKR 273 >gi|195570818|ref|XP_002103401.1| GD20396 [Drosophila simulans] gi|194199328|gb|EDX12904.1| GD20396 [Drosophila simulans] Length = 896 Score = 143 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IA+D E C+VQ+S I + + L +L D K+ Sbjct: 287 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDDMHILNLVLTDPKKL 345 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI L + + +F T A++ + L LK L +++ K+ Q Sbjct: 346 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAYLLKHYLDLDVDKSLQ 403 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW L + + YA D L + + T L + Sbjct: 404 LADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLQQ 441 >gi|67593930|ref|XP_665760.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54656583|gb|EAL35530.1| hypothetical protein Chro.50386 [Cryptosporidium hominis] Length = 875 Score = 143 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 2/149 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D E + + ++QLS I L + + K K+ H Sbjct: 304 LAIDVEHHSNQSYKGFVSLIQLSTRTHDYIIDPFNLFN-EIQMLNELTANPKILKVLHGS 362 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +DI L F V + +F T A+R+ T + LK+ L ++I K Q +DW Sbjct: 363 DYDIIWLQRDFSVYIVNMFDTGQAARILNTPG-GYSLKNLLSIYCSLDIDKRFQLADWRE 421 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL 171 LS+E ++YA D +L + L Sbjct: 422 RPLSNELIEYARGDTHYLLYIYDIMKNLL 450 >gi|66357594|ref|XP_625975.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD domain and an HRDc domain [Cryptosporidium parvum Iowa II] gi|46227246|gb|EAK88196.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD domain and an HRDc domain [Cryptosporidium parvum Iowa II] Length = 957 Score = 143 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 2/149 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 +A+D E + + ++QLS I L + + K K+ H Sbjct: 304 LAIDVEHHSNQSYKGFVSLIQLSTRTHDYIIDPFNLFN-EIQMLNELTANPKILKVLHGS 362 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 +DI L F V + +F T A+R+ T + LK+ L ++I K Q +DW Sbjct: 363 DYDIIWLQRDFSVYIVNMFDTGQAARILNTPG-GYSLKNLLSIYCSLDIDKRFQLADWRE 421 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL 171 LS+E ++YA D +L + L Sbjct: 422 RPLSNELIEYARGDTHYLLYIYDIMKNLL 450 >gi|46123343|ref|XP_386225.1| hypothetical protein FG06049.1 [Gibberella zeae PH-1] Length = 807 Score = 143 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 2/171 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +EG + IAVD E + ++Q+S + + + + Sbjct: 225 VDTYEGVLEMLGELMKAKEIAVDLEHHDFRSYVGLVSLMQISTREKDWIVDTLQPWRHKL 284 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + + K K+FH DI L G+ V +F T A L L Sbjct: 285 EVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLFDTFFACGQLNYPAK--SLAYLL 342 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + + + K Q +DW L E L YA SD +L + + +L Sbjct: 343 SKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYDRVRNELVAA 393 >gi|149244804|ref|XP_001526945.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146449339|gb|EDK43595.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 826 Score = 143 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 4/185 (2%) Query: 7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +E + A + IAVD E +C++Q+S + I +A + Sbjct: 236 NEEQLDAMIEELKAASEIAVDLEHHDYRSYYGLVCLMQISNREKDWVIDTLAL-RDELSK 294 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L + + + K+FH DI L G+ + +F T ASR + + L+ L Sbjct: 295 LNVIFTNHEIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASR--QLGFAKFSLQYLLDT 352 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 SK Q +DW L L YA SD L + Q KL + Sbjct: 353 FAHFRTSKKYQLADWRIRPLPAPMLAYARSDTHFLLYIYDQLRNKLIDQDKLSKVLFELR 412 Query: 186 FLMDR 190 + R Sbjct: 413 QVAKR 417 >gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana] Length = 237 Score = 143 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 4/162 (2%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 AE A+ AVDTE L ++Q+S + + IA L + D Sbjct: 68 AEILAKEQ-VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIAL-HDVMSILRPVFSD 125 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+FH D+ L F + V +F T A + Q L L+ + G+ + Sbjct: 126 PNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 183 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q DW LS+E ++YA +D +L + T +L++L Sbjct: 184 KLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQL 225 >gi|171742685|ref|ZP_02918492.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC 27678] gi|283456244|ref|YP_003360808.1| ribonuclease D [Bifidobacterium dentium Bd1] gi|171278299|gb|EDT45960.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC 27678] gi|283102878|gb|ADB09984.1| Ribonuclease D [Bifidobacterium dentium Bd1] Length = 433 Score = 143 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 8/176 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGML 70 + A ++A D E +VQ G G + +A + + + Sbjct: 33 DLLAAGTGSLAADAERASGYRYGHEDWLVQFKRTGAGIGLLDPQALAQAGADWNDFNRAV 92 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ G+ +F T+IA+RL + + GL + LG+ Sbjct: 93 GDA--TWILHDSLQDLPGF-ADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLT 147 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++K ++DWS L + YAA DV L L + +L+R G+ D A + Sbjct: 148 LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEQRMRTELKRQGKRDWAEEEFAY 203 >gi|195501501|ref|XP_002097822.1| GE26425 [Drosophila yakuba] gi|194183923|gb|EDW97534.1| GE26425 [Drosophila yakuba] Length = 900 Score = 143 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IA+D E C+VQ+S I + L +L D K+ Sbjct: 287 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDEMHILNLVLTDPKKL 345 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI L + + +F T A++ + L LK L +++ K+ Q Sbjct: 346 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALN--LARLSLAYLLKHYLDLDVDKSLQ 403 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW L + + YA D L + + T L + Sbjct: 404 LADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLQQ 441 >gi|326477901|gb|EGE01911.1| exosome complex exonuclease Rrp6 [Trichophyton equinum CBS 127.97] Length = 824 Score = 143 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 2/155 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + + IAVD E +C++Q+S + + + + L + D Sbjct: 259 LKQAEEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 318 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + LK L E +G + K Q Sbjct: 319 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQ 376 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++DW L L YA SD L + + +L Sbjct: 377 TADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQL 411 >gi|302657746|ref|XP_003020587.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum HKI 0517] gi|291184437|gb|EFE39969.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum HKI 0517] Length = 881 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 2/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + + + + L + D Sbjct: 262 LKQAKEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 321 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + LK L E +G + K Q Sbjct: 322 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQ 379 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 ++DW L L YA SD L + + +L L Sbjct: 380 TADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLEL 417 >gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6] Length = 576 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 27/204 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + + +DTET+ ++ +VQL + + G L +LVD+ Sbjct: 19 LKDESYLFLDTETVSE-----KIRLVQLGNNEDVFIVDLFETGSYGVDFLKDLLVDKGI- 72 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 + H ++D+ L+ G+ VF T IAS+L ++H L+ LG + K+ Q Sbjct: 73 -VGHNLKYDLKFLYRY-GIEPYAVFDTMIASQLL-GELDRHSLQKVAMHYLGEVLDKSLQ 129 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD-----------------L 179 S+W LS EQL+YAA DV + L +KL + + Sbjct: 130 MSNWGRAVLSKEQLEYAALDVKMVRDLYSILLDKLNSTAHQEETLLKTRTSRVFGLKNPV 189 Query: 180 ATSCCNFLMDRAELDLLGWENVDI 203 A F+ + A+L+L G VDI Sbjct: 190 AIIEMAFVQEVAKLELNGIG-VDI 212 >gi|189182142|gb|ACD81847.1| LD13130p [Drosophila melanogaster] Length = 930 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IA+D E C+VQ+S I + + L +L D K+ Sbjct: 317 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDDMHILNLVLTDPKKL 375 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI L + + +F T A++ + L LK L +++ K+ Q Sbjct: 376 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAYLLKHYLDLDVDKSLQ 433 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW L + + YA D L + + T L + Sbjct: 434 LADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQ 471 >gi|320583859|gb|EFW98072.1| hypothetical protein HPODL_0702 [Pichia angusta DL-1] Length = 729 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 6/167 (3%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQ-KNAPNL 66 D+ E + IAVD E C++QL+ I ++ + NL Sbjct: 229 DDLLVELS--KCKVIAVDLEHHDYRTYHGITCLMQLTTDTKKDYLIDPLSPELRPHLVNL 286 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + D K+FH DI L G+ V +F T ASR +H L L+ Sbjct: 287 NVIFTDPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASR--ELGLGRHSLAHLLETY 344 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + SK Q +DW L+ E YA +D L + + +L + Sbjct: 345 VKFKTSKKWQLADWRMRPLNSEMKNYAKADTHFLIEVFYKMHSELVQ 391 >gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera] Length = 935 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 5/164 (3%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 ++ + + V AVDTE L ++Q+S + + IA L + Sbjct: 124 ELADVLSKQRV--FAVDTEQHSLRSFLGFTALIQISTQNEDYLVDTIAL-HDTLDVLQPV 180 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + K+FH D+ L F + V +F T A + Q L L+ G+ Sbjct: 181 FANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGV 238 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +K Q DW LS E L+YA +D +L + +L++ Sbjct: 239 ATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQ 282 >gi|255566405|ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis] gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative [Ricinus communis] Length = 977 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 5/165 (3%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 ++ E + + AVDTE L +VQ+S + IA L + Sbjct: 134 ELTDELSNQ--SVFAVDTEQHSLRSFLGFTALVQISTQKEDYLLDTIAL-HDAMGILGAV 190 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + K K+FH G DI L F + V +F T A + Q L L+ G+ Sbjct: 191 FANPKICKVFHGGDNDILWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGV 248 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + +K Q DW L E LQYA +D +L + +L++ Sbjct: 249 STNKLLQREDWRQRPLPAEMLQYALTDAHYLLYIASCLIAELKQK 293 >gi|302817816|ref|XP_002990583.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii] gi|300141751|gb|EFJ08460.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii] Length = 1449 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 71/185 (38%), Gaps = 6/185 (3%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ + AVDTE + ++Q+S I IA L Sbjct: 770 EDLAQVLSEE--SEFAVDTEQHSIRSFLGFTALIQISTYKRDYLIDAIAL-HDEMETLRP 826 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + + K+FH DI L F + V +F T A + Q L L+ Sbjct: 827 VFANASICKVFHGADSDILWLQRDFHIYVVNLFDTARACDVLGK--PQRSLAYLLQTYCN 884 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 I+ +KA Q SDW L ++ L YA SD L + + +L + G +DLA + Sbjct: 885 ISTNKAFQKSDWRQRPLPEDILLYARSDAHFLLYIARKLYSELLQ-GETDLANAPLQMAT 943 Query: 189 DRAEL 193 R+ L Sbjct: 944 RRSHL 948 >gi|120554530|ref|YP_958881.1| 3'-5' exonuclease [Marinobacter aquaeolei VT8] gi|120324379|gb|ABM18694.1| 3'-5' exonuclease [Marinobacter aquaeolei VT8] Length = 383 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 3/170 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 +A+DTE + +VQL DG ++ + ML DE R K+ + Sbjct: 38 PVALDTEFERVSTFYPIPGLVQLGA-DGQFWLVDPEVAEAAGS-FRAMLADESRPKLLYA 95 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ + + V V +I + L G ++ L G + K+ SDW Sbjct: 96 MSEDLELFRHWLNVEPAGVLDLQIGAALAGAGF-SVGYARLVETLFGEALDKSATRSDWV 154 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 + L+ Q +YA D+ L L L++ + A Sbjct: 155 SRPLTPAQERYALDDIRFLEPLYGWVLANLRQRNLEHALADESRRFANEA 204 >gi|309801464|ref|ZP_07695591.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022] gi|308221979|gb|EFO78264.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022] Length = 430 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 8/176 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGML 70 + A ++A D E +VQ G G + +A + + + Sbjct: 30 DLLAAGTGSLAADAERASGYRYGHEDWLVQFKRTGAGIGLLDPQALAQAGADWNDFNRAV 89 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ G+ +F T+IA+RL + + GL + LG+ Sbjct: 90 GDA--TWILHDSLQDLPGF-ADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLT 144 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++K ++DWS L + YAA DV L L + +L+R G+ D A + Sbjct: 145 LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEQRMRTELKRQGKRDWAEEEFTY 200 >gi|306822549|ref|ZP_07455927.1| ribonuclease D [Bifidobacterium dentium ATCC 27679] gi|304554094|gb|EFM42003.1| ribonuclease D [Bifidobacterium dentium ATCC 27679] Length = 433 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 8/176 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGML 70 + A ++A D E +VQ G G + +A + + + Sbjct: 33 DLLAAGTGSLAADAERASGYRYGHEDWLVQFKRTGAGIGLLDPQALAQAGADWNDFNRAV 92 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ G+ +F T+IA+RL + + GL + LG+ Sbjct: 93 GDA--TWILHDSLQDLPGF-ADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLT 147 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++K ++DWS L + YAA DV L L + +L+R G+ D A + Sbjct: 148 LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEQRMRTELKRQGKRDWAEEEFTY 203 >gi|161078302|ref|NP_001097795.1| Rrp6 [Drosophila melanogaster] gi|158030263|gb|AAF55107.3| Rrp6 [Drosophila melanogaster] Length = 900 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IA+D E C+VQ+S I + + L +L D K+ Sbjct: 287 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDDMHILNLVLTDPKKL 345 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI L + + +F T A++ + L LK L +++ K+ Q Sbjct: 346 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAYLLKHYLDLDVDKSLQ 403 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW L + + YA D L + + T L + Sbjct: 404 LADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQ 441 >gi|154301232|ref|XP_001551029.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10] gi|150856187|gb|EDN31379.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10] Length = 823 Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 2/168 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +EG + + IAVD E + ++Q+S + + + ++ Sbjct: 226 VDTYEGVLEMLEELKGATEIAVDLEHHDTRSYVGLVSLMQVSTREKDWIVDTLKPWRQQL 285 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D K+FH DI L G+ V +F T A R R L L Sbjct: 286 QVLNEVFADPNIIKVFHGAYMDIVWLQRDLGLYVVGLFDTHYACR--RLGFAGGSLAFLL 343 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 K+ + + K Q +DW L +E YA +D L + +L Sbjct: 344 KKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNLRNEL 391 >gi|163841118|ref|YP_001625523.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209] gi|162954594|gb|ABY24109.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209] Length = 480 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 8/179 (4%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70 A A VD E R +VQ+ G GT I + + L Sbjct: 92 AARALANGSGPAGVDAERASGFRYGQRAFLVQIRREGAGTWLIDP--EPFDDLKIIDDAL 149 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 E I H D+ L G+ +F T++A+R+ + GL +++LLG Sbjct: 150 --NGVEWILHAASQDLPCLS-ELGMWPSALFDTELAARIAG--LPKVGLAAVVEQLLGFG 204 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++K ++DWS L + L+YAA DV L LR + E L+ G+ + AT ++ Sbjct: 205 LAKEHSAADWSTRPLPEPWLRYAALDVEVLAELREELIELLEADGKLEWATQEFQAILA 263 >gi|156039491|ref|XP_001586853.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980] gi|154697619|gb|EDN97357.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980 UF-70] Length = 808 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 2/175 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +EG + + IAVD E + ++Q+S + + + ++ Sbjct: 226 VDTYEGVLEMLEELKGAKEIAVDLEHHDTRSYVGLVSLMQISTREKDWIVDTLKPWRQQL 285 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + D K+FH DI L G+ V +F T A R R L L Sbjct: 286 QVLNEVFADPCIIKVFHGAYMDIVWLQRDLGLYVVGLFDTHYACR--RLGLAGGSLAFLL 343 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 K+ + + K Q +DW L +E YA +D L + +L ++ Sbjct: 344 KKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNLRNELIDASNTE 398 >gi|171679581|ref|XP_001904737.1| hypothetical protein [Podospora anserina S mat+] gi|170939416|emb|CAP64644.1| unnamed protein product [Podospora anserina S mat+] Length = 628 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 11/167 (6%) Query: 15 CAARYVDAIAVDTETLGL-------MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 I VDT L L L ++Q+S + + + + L Sbjct: 17 LDVESTKPIWVDT--LRLIWTHHDFRTYTGLLSLMQISTREKDWIVDTLVPWRHRLEVLN 74 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + D K+FH D+ L GV V +F T AS + L LK+ + Sbjct: 75 EVFADPGIVKVFHGAFMDVVWLQRDLGVYVVGLFDTHHASTVLGYGGG--SLAFLLKKFV 132 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 G K Q +DW L E L YA +D +L + L Sbjct: 133 GFEADKRWQLADWRIRPLPAEMLYYARADTHYLLYVYDMIRNDLAAA 179 >gi|320093825|ref|ZP_08025670.1| ribonuclease D [Actinomyces sp. oral taxon 178 str. F0338] gi|319979258|gb|EFW10756.1| ribonuclease D [Actinomyces sp. oral taxon 178 str. F0338] Length = 412 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 15/184 (8%) Query: 10 DIPAEC------AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKN 62 D PA+ +A+D E +VQ+ D G+ I Sbjct: 32 DTPADLERAASRLRSGSAPVALDVERALGFRYGSDPYLVQIRREDVGSFLID-----SHA 86 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 P+L + + H D+ L G+R +F T+IA+RL + GL Sbjct: 87 LPDLSPLNDGVGSTWLLHDCSQDLPNL-RAVGLRCPELFDTEIAARLVGM--RRFGLASV 143 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + +LG+ + K Q++DWS L + L+YAA DV L L + + +L LGR + AT Sbjct: 144 AESVLGLALVKDHQAADWSVRPLPKDWLRYAALDVELLTELHRRLSTRLHDLGRWEWATQ 203 Query: 183 CCNF 186 Sbjct: 204 EFAH 207 >gi|256832621|ref|YP_003161348.1| 3'-5' exonuclease [Jonesia denitrificans DSM 20603] gi|256686152|gb|ACV09045.1| 3'-5' exonuclease [Jonesia denitrificans DSM 20603] Length = 406 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 71/201 (35%), Gaps = 21/201 (10%) Query: 3 TIRVHEGDIPAEC-------------AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGD 48 + H D PA+ R AVD E DR ++Q+ G Sbjct: 11 PVLTHPQDGPADLVNTTVSYQAALRRLDRGHGPFAVDAERASGYRYGDRNYLIQVRREGA 70 Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 GT I A + L ++ IFH D+ L G+ +F T++A+R Sbjct: 71 GTFLIDPTAV--DDFSELNAVMA--ADTWIFHAAIQDLGPL-RDQGLTPGTIFDTEVAAR 125 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 L ++ L LG+ + K DWS L L YAA DV L L + T Sbjct: 126 LLG--LDRVNLAAVTAHFLGVTLEKQHSHQDWSTRPLPSSWLTYAALDVELLGDLAISET 183 Query: 169 EKLQRLGRSDLATSCCNFLMD 189 + L + A ++ Sbjct: 184 DALTETRKLRWAHEEFAYIQA 204 >gi|225447009|ref|XP_002268685.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 936 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 5/164 (3%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 ++ + + V AVDTE L ++Q+S + + IA L + Sbjct: 124 ELADVLSKQRV--FAVDTEQHSLRSFLGFTALIQISTQNEDYLVDTIAL-HDTLDVLQPV 180 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + K+FH D+ L F + V +F T A + Q L L+ G+ Sbjct: 181 FANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGV 238 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +K Q DW LS E L+YA +D +L + +L++ Sbjct: 239 ATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQ 282 >gi|320034794|gb|EFW16737.1| exosome complex exonuclease Rrp6 [Coccidioides posadasii str. Silveira] Length = 772 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 2/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + + + ++ L + D + Sbjct: 244 LKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVFADPRIL 303 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T AS + LK L + + + K Q Sbjct: 304 KVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNY--PKKSLKFLLDKFVNLEAEKQYQ 361 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 ++DW L YA SD +L + +L Sbjct: 362 TADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELIEK 399 >gi|115896423|ref|XP_795972.2| PREDICTED: similar to G protein-coupled receptor [Strongylocentrotus purpuratus] gi|115925241|ref|XP_001183731.1| PREDICTED: similar to G protein-coupled receptor [Strongylocentrotus purpuratus] Length = 976 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 20/193 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVDEK 74 R I +D E + L + RL +VQ+S DG D + K +L L + Sbjct: 730 RETVVIGLDCEGVELGREKGRLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKTLEHDS 789 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS-----RLTRTYTNQHGLKDNLKELLGI 129 K+ H D L++ FGV+++ VF T IA +L R + Q G K ELLG Sbjct: 790 ILKVIHACNSDTYSLYHDFGVKLKNVFDTSIAMFTIMEQLNRNHPYQIGYKALC-ELLGE 848 Query: 130 NIS--------KAQQSSD-WSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDL 179 S K ++ D W L++E + YAASD + L + L+ L R+ R DL Sbjct: 849 AASHKDDDFKKKMIETEDFWKIRPLTEEMIYYAASDTLCLVPTVYLKLNGMLTRVWR-DL 907 Query: 180 ATSCCNFLMDRAE 192 T C M+R + Sbjct: 908 FTWSCKNAMERKQ 920 >gi|303310683|ref|XP_003065353.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta SOWgp] gi|240105015|gb|EER23208.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta SOWgp] Length = 766 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 2/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + + + ++ L + D + Sbjct: 244 LKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVFADPRIL 303 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T AS + LK L + + + K Q Sbjct: 304 KVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNY--PKKSLKFLLDKFVNLEAEKQYQ 361 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 ++DW L YA SD +L + +L Sbjct: 362 TADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELIEK 399 >gi|212715679|ref|ZP_03323807.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM 16992] gi|212661046|gb|EEB21621.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM 16992] Length = 431 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 8/175 (4%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLV 71 A ++A D E +VQ G G + + A + + + Sbjct: 31 ALASSHGSLAADAERASGFRYGHDDWLVQFKRDGAGIGLLDPQALTAEGVDWNDFNAAVG 90 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D I H D+ G++ + +F T+IA+RL + GL + LG+ + Sbjct: 91 DA--VWILHDSLQDLPGF-NDLGLKPQRLFDTEIAARLLGM--KRFGLAAVTEHYLGLTL 145 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 +K ++DWS L + YAA DV L L +L+R G+ + A ++ Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETIMRAELRRQGKIEWAEEEFDY 200 >gi|302916517|ref|XP_003052069.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI 77-13-4] gi|256733008|gb|EEU46356.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI 77-13-4] Length = 833 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 2/171 (1%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 + +EG + + IAVD E + ++Q+S + + + + Sbjct: 226 VDTYEGVLEMLKELKKAKEIAVDLEHHDFRSYIGLVSLMQISTREKDWIVDTLQPWRHKL 285 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + + K K+FH D+ L G+ V +F T A L L Sbjct: 286 EVLNEVFTNPKIIKVFHGAYMDMVWLQRDLGLYVNGLFDTFFACDQLHYPAK--SLAFLL 343 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + + + K Q +DW + +E + YA SD +L + + +L Sbjct: 344 SKFVDFDADKQYQLADWRIRPIPEEMMYYARSDTHYLLYIYDKVRNELVAT 394 >gi|298252714|ref|ZP_06976508.1| ribonuclease D [Gardnerella vaginalis 5-1] gi|297533078|gb|EFH71962.1| ribonuclease D [Gardnerella vaginalis 5-1] Length = 476 Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 8/179 (4%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLV 71 A +A D E ++Q G G +D I + + + Sbjct: 31 LLAAGSGPLAADAERASGFRYSHEDWLIQFKRKGAGIGLLDPIELTKLGADWNEFNKAVG 90 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D I H D+ F G+R R +F T+IA++L + GL + LG+ + Sbjct: 91 D--VPWIIHDSMQDLPGFF-DIGLRPRALFDTEIAAKLLG--RKRFGLSSVTEYYLGLTL 145 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +K ++DWS L + YAA DV L L +L++ G+ A L+ + Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMRVELKKQGKLSWAEEEFKHLLSK 204 >gi|119195137|ref|XP_001248172.1| hypothetical protein CIMG_01943 [Coccidioides immitis RS] Length = 766 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 2/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + + + ++ L + D + Sbjct: 244 LKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVFADPRIL 303 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T AS + LK L + + + K Q Sbjct: 304 KVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNY--PKKSLKFLLDKFVNLEAEKQYQ 361 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 ++DW L YA SD +L + +L Sbjct: 362 TADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELIEK 399 >gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40] gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40] Length = 703 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 47/230 (20%) Query: 13 AECAARYVDAIAVDTETL------GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + Y + +D ET L P ++ +VQ++ + + R +KN Sbjct: 2 DKDLLGYKKIVGIDIETWDGKKGGSLDPYSGKIALVQIAYDRNNIVLYRP--WEKNFEEA 59 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN----------- 115 + +L D+ K+ H +FD+ + + P+F T IAS++ + Sbjct: 60 LKVLSDKDVLKVGHNLKFDLKFFYMN-NIYPEPIFDTMIASQMIYAGLDEPDEISEVLEA 118 Query: 116 --------------------------QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 H L+ LK L I + K Q+S+W +LS+ Q Sbjct: 119 LKDDLTTEEVAIFDVFGKKRTKATKFSHSLQAVLKRELNIFLPKDVQNSNWGG-ELSEAQ 177 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199 +YA +DV +L L ++ +K++ L ++ FL L+L G + Sbjct: 178 KEYAINDVKYLKDLSIELWKKIKALNIENVFMLEMKFLPVLVMLELTGVK 227 >gi|270012325|gb|EFA08773.1| hypothetical protein TcasGA2_TC006462 [Tribolium castaneum] Length = 421 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + VD E + C+VQ+S D I IA + L + + Sbjct: 88 DLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIAL-KDELHALNEVFTNPDI 145 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KIFH D+ L GV V +F T+IA + + GL L++ + K Sbjct: 146 VKIFHSAVNDLKWLQQDLGVFVVNLFDTQIAMKALGY--KKLGLDALLQDY-HVAKDKTM 202 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 Q D+ L + YA D +L + +L CN Sbjct: 203 QRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCN 252 >gi|195451328|ref|XP_002072866.1| GK13832 [Drosophila willistoni] gi|194168951|gb|EDW83852.1| GK13832 [Drosophila willistoni] Length = 913 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 3/155 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IA+D E C+VQ+S I +++ L ++ D K+ KI Sbjct: 303 ASQIAIDVEHHSYRTFMGITCLVQMSTCSKD-YIFDTLVLREDMQLLNLVMTDPKKLKIL 361 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H DI L + + +F T A++ + L LK + +++ K+ Q +D Sbjct: 362 HGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAFLLKHYVDLDVDKSLQLAD 419 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 W L E + YA D +L + T L +L Sbjct: 420 WRMRPLPQELINYARQDTHYLIYVYQCLTNDLLKL 454 >gi|297243353|ref|ZP_06927286.1| ribonuclease D [Gardnerella vaginalis AMD] gi|296888600|gb|EFH27339.1| ribonuclease D [Gardnerella vaginalis AMD] Length = 476 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 8/179 (4%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLV 71 A ++A D E ++Q G G +D I + + + Sbjct: 31 LLASGSGSLAADAERASGFRYGHEDWLIQFKRKGAGIGLLDPIELTKLGADWNEFNKAVG 90 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D I H D+ F G+R R +F T+IA++L + GL + LG+ + Sbjct: 91 D--VPWIIHDSMQDLPGFF-DIGLRPRALFDTEIAAKLLG--RKRFGLSSVTEYYLGLTL 145 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +K ++DWS L + YAA DV L L +L++ G+ A L+++ Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMRGELKKQGKLSWAEEEFKHLLNK 204 >gi|225352286|ref|ZP_03743309.1| hypothetical protein BIFPSEUDO_03902 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157533|gb|EEG70872.1| hypothetical protein BIFPSEUDO_03902 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 243 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 8/175 (4%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLV 71 A ++A D E +VQ G G + +AA + + + Sbjct: 31 ALASSHGSLAADAERASGFRYGHDDWLVQFKRDGAGIGLLDPQALAAEGADWNDFNRAVG 90 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D I H D+ G++ + +F T+IA+RL + GL + LG+ + Sbjct: 91 DA--VWILHDSLQDLPGF-NDLGLKPQRLFDTEIAARLLGM--KRFGLAAVTEHYLGLTL 145 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 +K ++DWS L + YAA DV L L +LQ+ G+ + A ++ Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETTMRAELQKQGKIEWAEEEFDY 200 >gi|218184595|gb|EEC67022.1| hypothetical protein OsI_33743 [Oryza sativa Indica Group] Length = 854 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 21/175 (12%) Query: 2 TTIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 T H D+ A + A TE +S + + Sbjct: 229 DTPFTHVEDLKSLEVLATKLKSA----TEFA-------------ISTRTEDFIVDTLKLR 271 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + L + D ++K+ H DI L FG+ V +F T ASR+ +++ L Sbjct: 272 KYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRIL--QMDRNSL 329 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + L G+ +K QS+DW L DE ++YA D +L + +L + Sbjct: 330 EHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKE 384 >gi|294865716|ref|XP_002764472.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983] gi|239863939|gb|EEQ97189.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983] Length = 703 Score = 140 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 5/161 (3%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + + + AR +A+D E + R C++Q++ + +A G Sbjct: 547 DTVELVDEMLDELAEARE---VAIDLEHHNMQSYRGFTCLIQIATRKKDYIVDVLAPGIM 603 Query: 62 N-APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + + D K+ H D+ L + +F T A+R+ + LK Sbjct: 604 MKMHDFNRITSDPGIVKVLHGADMDVQWLQRDLSAYLCNMFDTGQAARVLELGG-GYSLK 662 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 + L G KA Q +DW LS+ QYA DV +L Sbjct: 663 NLLDFYCGYKADKANQLADWRQRPLSERMKQYARDDVHYLL 703 >gi|300781041|ref|ZP_07090895.1| ribonuclease D [Corynebacterium genitalium ATCC 33030] gi|300532748|gb|EFK53809.1| ribonuclease D [Corynebacterium genitalium ATCC 33030] Length = 394 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 69/179 (38%), Gaps = 6/179 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGML 70 A+ A AVDTE DR ++Q+ G GT ++ L + Sbjct: 15 AAKQLAAGHGPFAVDTERASAYRYDDRAFLIQIHRRGAGTFLFQPEGLREELTSALAPAV 74 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 E I H D+ L G+ +F T +A R+ + L + E G+ Sbjct: 75 NGED--WIIHAAPEDLPSL-AELGLHPGTLFDTALAGRIAG--FEKPNLAAMVAEFCGVE 129 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K DWS L E L YAA DV++L L E L LG+ D A ++D Sbjct: 130 LEKGHGREDWSLPTLPREWLDYAALDVIYLPDLAEAQAELLGGLGKLDYAEQEFAHIVD 188 >gi|189218664|ref|YP_001939305.1| Ribonuclease D [Methylacidiphilum infernorum V4] gi|189185522|gb|ACD82707.1| Ribonuclease D [Methylacidiphilum infernorum V4] Length = 324 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 11/165 (6%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 V L G + + + L +L + E I H +D+ +L + R +F Sbjct: 2 VSLCQGQHLAVVD---CLKDDLSALWDILS--RSEWICHGMDYDLKMLRKAGCPQPRTIF 56 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 T IA++L G + + ++K Q +DWS L + Y A DV++L Sbjct: 57 DTHIAAKLCG--FEAVGYARLVSLFFQVKLTKEHQKADWSRRPLPPSLINYTAKDVLYLE 114 Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG----WENVD 202 L+ T L+ LGR + C + + E LG WE ++ Sbjct: 115 KLKEILTRLLKSLGRWEWMEQSCKRIQRKIENSFLGSPKEWERIE 159 >gi|294786964|ref|ZP_06752218.1| HRDC:3-5 exonuclease [Parascardovia denticolens F0305] gi|315226603|ref|ZP_07868391.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] gi|294485797|gb|EFG33431.1| HRDC:3-5 exonuclease [Parascardovia denticolens F0305] gi|315120735|gb|EFT83867.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] Length = 432 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 8/177 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKR 75 IAVD E + ++Q G G I +A + + ++ D Sbjct: 38 ASGPIAVDAERASGYRYSQQDWLIQFKREGAGIALIDPVALSEQEMDWQDVNEAFGDA-- 95 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 I H D+ ++ G++ +F T+ A+RL + GL + L + ++K Sbjct: 96 VWIMHDSSQDLPG-YFDLGLKPAGLFDTERAARLLGQ--VRFGLAAVTERYLDLTLAKEH 152 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 ++DWS L + YAA DV L L + L++ G+ D A +L+++ + Sbjct: 153 SAADWSYRPLDRDMRIYAALDVEVLIELEGLMKKDLKKAGKWDWAQEDFIYLLNKGK 209 >gi|261206146|ref|XP_002627810.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis SLH14081] gi|239592869|gb|EEQ75450.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis SLH14081] Length = 814 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E +C++Q+S + + + ++ L + D K Sbjct: 245 LKQTTEIAIDLEHHDTHSYHGLVCLMQISTREKDWIVDTLKPWREELQILNEVFADPKII 304 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + Y + LK L++ + K Q Sbjct: 305 KVLHGSTMDVIWLQRDLGLYLVGLFDTYHAA-VALNYPKR-SLKFLLEKFVNFQAEKKYQ 362 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW L YA SD +L + Q L Sbjct: 363 MADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNSLVE 399 >gi|68536154|ref|YP_250859.1| hypothetical protein jk1077 [Corynebacterium jeikeium K411] gi|260578851|ref|ZP_05846757.1| ribonuclease D (RNase D) [Corynebacterium jeikeium ATCC 43734] gi|68263753|emb|CAI37241.1| rnd [Corynebacterium jeikeium K411] gi|258602998|gb|EEW16269.1| ribonuclease D (RNase D) [Corynebacterium jeikeium ATCC 43734] Length = 423 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 84/203 (41%), Gaps = 8/203 (3%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNA 63 + D + A IA+DTE DR ++QL G GT I A Q A Sbjct: 17 TPQQIDAVSRVLAAGTGPIAIDTERASAYRYDDRAFLIQLRRHGSGTFLIDPEAEPQ--A 74 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 + +V+E E + H D+ L G R + + T+IA +L + GL L Sbjct: 75 TRRMAEVVNEA-EWVLHAAHTDLPCLM-ALGWRPQVLHDTQIAGQLLGA--ERIGLSGML 130 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 I + K + ++DWS L+ L YAA DV L L E+L + GR++ Sbjct: 131 DAYFDIQVPKDKGNADWSRRPLTQAMLNYAALDVEWLLELLDCCLEELAKTGRTEWYIQE 190 Query: 184 CNFLMDRAE-LDLLGWENVDIFS 205 C ++ A L W ++ S Sbjct: 191 CQHVLASASPLSANDWTDLKGLS 213 >gi|239610958|gb|EEQ87945.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ER-3] gi|327351664|gb|EGE80521.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ATCC 18188] Length = 814 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E +C++Q+S + + + ++ L + D K Sbjct: 245 LKQTTEIAIDLEHHDTHSYHGLVCLMQISTREKDWIVDTLKPWREELQILNEVFADPKII 304 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + Y + LK L++ + K Q Sbjct: 305 KVLHGSTMDVIWLQRDLGLYLVGLFDTYHAA-VALNYPKR-SLKFLLEKFVNFQAEKKYQ 362 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW L YA SD +L + Q L Sbjct: 363 MADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNSLVE 399 >gi|194900862|ref|XP_001979974.1| GG21034 [Drosophila erecta] gi|190651677|gb|EDV48932.1| GG21034 [Drosophila erecta] Length = 900 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IA+D E C+VQ+S I +++ L +L D K+ Sbjct: 287 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILREDMHILNLVLTDPKKL 345 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI L + + +F T A++ + L LK L +++ K+ Q Sbjct: 346 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALN--LARLSLAYLLKYYLDLDVDKSLQ 403 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW L + + YA D L + + T L + Sbjct: 404 LADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLQQ 441 >gi|194743298|ref|XP_001954137.1| GF18126 [Drosophila ananassae] gi|190627174|gb|EDV42698.1| GF18126 [Drosophila ananassae] Length = 909 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IA+D E C+VQ+S I + L +L D K+ Sbjct: 299 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDEMHILNLVLTDPKKL 357 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KI H DI L + + +F T A++ + L LK + +++ K+ Q Sbjct: 358 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALN--LARLSLAFLLKHYIDLDVDKSLQ 415 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +DW L + + YA D L + + T L Sbjct: 416 LADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLEQ 453 >gi|146421793|ref|XP_001486840.1| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC 6260] Length = 755 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 61/170 (35%), Gaps = 4/170 (2%) Query: 7 HEGDIPA-ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 E D+ IAVD E +C++Q+S + II + + Sbjct: 230 TESDLSQMVSDLSSQTEIAVDLEHHDYRSYLGIVCLMQISSREKD-WIIDTLKLRDSLVV 288 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L + + K+FH DI L G+ V +F T AS+ + L L+ Sbjct: 289 LNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASKKLG--LPRFSLAYLLEN 346 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 SK Q +DW L L YA SD L + Q +L G Sbjct: 347 YANFKTSKKYQLADWRMRPLLGPMLSYARSDTHFLLYVYDQLRNQLLSSG 396 >gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] Length = 575 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 26/211 (12%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I EG + + + +DTET G DRL +VQL + G++ Sbjct: 6 ITSPEGLLKVKEKLSPEAVLFLDTETTG-----DRLRLVQLGGQGEIFLLDLFELGERGV 60 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L +L + + H +FD+ L+ + VF T +AS+L ++H L+ Sbjct: 61 LFLKELLSQKGV--VGHNLKFDLKYLYRYH-IEPYAVFDTMVASQLL-AELDRHSLQSVA 116 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ----------- 172 LG + K+ Q SDW + L+ QL+YAA DVV + L EKL Sbjct: 117 MHYLGQVLDKSLQLSDWGSRVLTKAQLEYAALDVVVVRDLFPILLEKLNQCPVREEILLK 176 Query: 173 -RLGR-----SDLATSCCNFLMDRAELDLLG 197 R R + +A F+ + A+L+L G Sbjct: 177 TRTSRVFGLQNPVAIVEMAFVQEVAKLELNG 207 >gi|293608164|ref|ZP_06690467.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828737|gb|EFF87099.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 374 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + + +L + Q++ +G V ++ + + + ++ IFH Sbjct: 25 GLDTEFIKVDTLWPKLGVCQVNV-NGDVYLLD-GVSLDLSQFWKKIFLAQQ--NIFHACG 80 Query: 84 FDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI ++++ + VF T++ + Q + LK L I+I K Q SDW A Sbjct: 81 EDIDLIYHYADQEDLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLDIDIEKDQTRSDWLA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 LS +QL YAA+DV++L L E+L++ G + C+ L Sbjct: 140 RPLSPQQLCYAANDVLYLMKLAHHIQEQLKQKGLYNYVLEDCSSLT 185 >gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B] gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B] Length = 550 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 D ET GL DR+C VQL+ G+ V ++++ G L +L D+ KIFH RFD Sbjct: 380 DIETTGLNWYADRICTVQLACGN-RVAVVQLPEGHTPQ-RLSQILGDQNILKIFHNARFD 437 Query: 86 IAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLKELLGINISKAQQSSDWSADD 144 + + Y + V + V CT RL H L++ L+ L + I K Q SDW+ Sbjct: 438 LRFMVYHWSVIPQNVACTLELVRLLNPRERAGHTLREVLERYLAVQIIKDQTCSDWTTAQ 497 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L+ EQ++YA +DV +L L R R + A Sbjct: 498 LTQEQIRYATNDVRYLPVLFDLLMNM-ARERRLEEAA 533 >gi|325122106|gb|ADY81629.1| ribonuclease D, processes tRNA [Acinetobacter calcoaceticus PHEA-2] Length = 374 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + + +L + Q++ +G V ++ + + + ++ IFH Sbjct: 25 GLDTEFIKVDTLWPKLGVCQVNV-NGDVYLLD-GVSLDLSQFWKKIFLAQQ--NIFHACG 80 Query: 84 FDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI ++++ + VF T++ + Q + LK L I+I K Q SDW A Sbjct: 81 EDIDLIYHYADQEDLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLDIDIEKDQTRSDWLA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 LS +QL YAA+DV++L L E+L++ G + C+ L Sbjct: 140 RPLSPQQLCYAANDVLYLMKLAHHIQEQLKQKGLYNYVLEDCSSLT 185 >gi|291456557|ref|ZP_06595947.1| ribonuclease D [Bifidobacterium breve DSM 20213] gi|291381834|gb|EFE89352.1| ribonuclease D [Bifidobacterium breve DSM 20213] Length = 433 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 8/174 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQK--NAPNLVGML 70 E A ++A D E ++Q G G + IA Q + + Sbjct: 34 EALADASGSLAADAERASGFRYGHEDWLIQCKREGAGIALLDPIALTQSGADWNEFNEAV 93 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ G++ + +F T+IA+RL + + GL + LGI Sbjct: 94 GDA--TWILHDSLMDLPGF-ADLGLQPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ++K ++DWS L + YAA DV L L L+ G+ + A Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELENLMRRDLRAAGKDEWAEEEF 202 >gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 176 Score = 139 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 4/165 (2%) Query: 10 DIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 D E AA AVD E + C++Q+S + + +A L Sbjct: 14 DALEELAAHLEECKEFAVDLEHHSYRSFKGFTCLMQISTRERDFVVDVLALRSHVRDALG 73 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 D + K+ H D+ L FG+ V +F T A+R+ GL L Sbjct: 74 KAFADADKLKVMHGADNDVQWLQKDFGMFVSCLFDTGQAARVLE--LPSKGLAYLLHHYC 131 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 GI +K Q +DW L+ E ++YA D HL + + E L+ Sbjct: 132 GIKANKRFQLADWRLRPLTKEMVEYARGDTHHLLYVHDRLKEALR 176 >gi|308234712|ref|ZP_07665449.1| ribonuclease D [Gardnerella vaginalis ATCC 14018] gi|311114520|ref|YP_003985741.1| hypothetical protein HMPREF0421_20636 [Gardnerella vaginalis ATCC 14019] gi|310946014|gb|ADP38718.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019] Length = 481 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 8/180 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQK--NAPNLVGML 70 A +A D E ++Q G G + IA G+ + + Sbjct: 54 NLLAAGSGPLAADAERASGFRYGHEDWLIQFKRKGAGIGLLDPIALGKLGVDWHEFNEAV 113 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ F G+R R +F T+IA++L + GL + LG+ Sbjct: 114 GDAP--WIIHDSMQDLPGFF-DIGLRPRALFDTEIAAKLLG--RKRFGLSSVTEYYLGLT 168 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++K ++DWS L + YAA DV L L + +L++ G+ A L+ + Sbjct: 169 LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMSGELKKQGKLLWANQEFAHLLSK 228 >gi|325088958|gb|EGC42268.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H88] Length = 807 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + V IA+D E +C++Q+S D + + ++ L + D K Sbjct: 245 LKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFSDPKIL 304 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + LK L++ K Q Sbjct: 305 KVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNY--PKKSLKFLLEKFANFQAEKKYQ 362 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW L YA SD +L + Q L Sbjct: 363 IADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNDLIE 399 >gi|225560671|gb|EEH08952.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus G186AR] Length = 807 Score = 138 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + V IA+D E +C++Q+S D + + ++ L + D K Sbjct: 245 LKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFSDPKIL 304 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + LK L++ K Q Sbjct: 305 KVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNY--PKKSLKFLLEKFANFQAEKKYQ 362 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW L YA SD +L + Q L Sbjct: 363 IADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNDLIE 399 >gi|289676535|ref|ZP_06497425.1| ribonuclease D [Pseudomonas syringae pv. syringae FF5] Length = 142 Score = 138 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 4/135 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + CA + + +A+DTE + + ++Q+ G I + + L Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+ H D+ VL G P+F T++A+ G ++E+ Sbjct: 69 SALLENRDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127 Query: 127 LGINISKAQQSSDWS 141 L I++ K + SDW Sbjct: 128 LDIDLPKGETRSDWL 142 >gi|262193925|ref|YP_003265134.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365] gi|262077272|gb|ACY13241.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365] Length = 925 Score = 138 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 71/162 (43%), Gaps = 10/162 (6%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 A A + +D ET DR LC+VQL+ + TV I A + + +L Sbjct: 768 ACAALLGEPRVGLDVET----TLFDRALCLVQLAAPEYTVVID--ARAVDDLGPVSELLA 821 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGI 129 KI H +F+ +F G+ + VF T SR R HGL LG Sbjct: 822 SRAVVKIIHNAQFE-RSVFRKLGMDIENVFDTLKVSRRLRGRKREGGHGLGAVCARELGR 880 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K +Q SDW+ L+ QL YAA D L AL +FT +L Sbjct: 881 ELDKHEQRSDWTQRPLTQRQLDYAALDAEVLLALHERFTREL 922 >gi|330955621|gb|EGH55881.1| ribonuclease D [Pseudomonas syringae Cit 7] Length = 235 Score = 138 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + L +L + K+ H D+ VL G P+F T++A+ G Sbjct: 5 DWRPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSR 63 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++E+L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 64 LVQEVLDIDLPKGETRSDWLERPLSETQISYAAEDAVHLAELFTILRPRL 113 >gi|85000709|ref|XP_955073.1| 3'-5' exonuclease [Theileria annulata strain Ankara] gi|65303219|emb|CAI75597.1| 3'-5' exonuclease, putative [Theileria annulata] Length = 790 Score = 138 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 15/187 (8%) Query: 7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +E D A + +++D E R +C++QLS I K Sbjct: 482 NESDFNAMLDKLKNSRILSMDVEHHDTETYRGFICLLQLSTPQENYIIDPFKIFGKMN-K 540 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L + D K KI H D+ L F + V +F T+ A+ + + L +++ Sbjct: 541 LNRLTTDPKILKIMHGACNDVIWLQRDFNIFVVNLFDTREAAIVLN--LPEQSLAKLVQK 598 Query: 126 LLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVHLHALRLQFTEKL--QRL 174 I ++K Q S+WS L DE L YA D +L L +++ + Sbjct: 599 YFNIKLNKRFQISNWSKSYNCLNCGIRPLDDEMLDYACCDSHYLIPLYNTLKDEILSKED 658 Query: 175 GRSDLAT 181 GR + Sbjct: 659 GRVKIIQ 665 >gi|299770307|ref|YP_003732333.1| ribonuclease D [Acinetobacter sp. DR1] gi|298700395|gb|ADI90960.1| ribonuclease D [Acinetobacter sp. DR1] Length = 374 Score = 138 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 7/190 (3%) Query: 1 MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + D+ +DTE + + +L + Q++ +G V ++ Sbjct: 1 MFQFIQQQTDLVDVLQKMDQCSIYGLDTEFIKVDTLWPKLGVCQVNV-NGDVYLLD-GVS 58 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHG 118 + + + ++ IFH DI ++++ + VF T++ + Q Sbjct: 59 LDLSQFWKKIFLAQQ--NIFHACGEDIDLIYHYADQEDLLNVFDTQVGLSFL-GHGLQVS 115 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + LK L I+I K Q SDW A LS +QL YAA+DV+++ L E+L++ G D Sbjct: 116 YQGALKLCLDIDIEKDQTRSDWLARPLSPQQLCYAANDVLYIMKLAHHIQEQLKQKGLYD 175 Query: 179 LATSCCNFLM 188 C+ L Sbjct: 176 YVLEDCSSLT 185 >gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1] gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1] Length = 584 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 24/203 (11%) Query: 16 AARYVDAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A + + +DTE + D++ ++Q+ Q + +L +L Sbjct: 18 AFKEDKYLFIDTEVAVKSFEDIDFFNDKIRLIQIGNYSKIFVYDMFRIPQ-FSEHLKELL 76 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGI 129 ++ I H +FDI L FG+ + VF T IAS+L + +H L L Sbjct: 77 ENKGV--IGHNLKFDIKFLKTNFGIFPQIVFDTMIASQLLSEDSREKHSLSALSYRLTDN 134 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR-------LGRSD---- 178 ++ K+QQ S W +L++EQL+YAA DV L + ++L R G+ Sbjct: 135 HLDKSQQRSPWGIKNLTEEQLRYAAKDVQVLREIFPVLRDELNRIETPHKATGKIHETFG 194 Query: 179 ----LATSCCNFLMDRAELDLLG 197 +A F+ A+++L G Sbjct: 195 LDNGVAVVEMAFVPQLADIELRG 217 >gi|91088803|ref|XP_968984.1| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum] Length = 377 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 5/170 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + VD E + C+VQ+S D I IA + L + + Sbjct: 88 DLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIAL-KDELHALNEVFTNPDI 145 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KIFH D+ L GV V +F T+IA + + GL L++ + K Sbjct: 146 VKIFHSAVNDLKWLQQDLGVFVVNLFDTQIAMKALGY--KKLGLDALLQDY-HVAKDKTM 202 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 Q D+ L + YA D +L + +L CN Sbjct: 203 QRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCN 252 >gi|262279001|ref|ZP_06056786.1| ribonuclease D [Acinetobacter calcoaceticus RUH2202] gi|262259352|gb|EEY78085.1| ribonuclease D [Acinetobacter calcoaceticus RUH2202] Length = 374 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + + +L + Q++ +G V ++ + + V ++ IFH Sbjct: 25 GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSQFWKKIFVAQQ--NIFHACG 80 Query: 84 FDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI ++++ + VF T++ + Q + LK L I+I K Q SDW A Sbjct: 81 EDIDLIYHYADQEDLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLDIDIEKDQTRSDWLA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 LS +QL YAA+DV+++ L E+L++ G D C+ L Sbjct: 140 RPLSPQQLCYAANDVLYIMKLAHHIQEQLKQKGLYDYVLEDCSSLT 185 >gi|283783345|ref|YP_003374099.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05] gi|283441638|gb|ADB14104.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05] Length = 476 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 8/179 (4%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLV 71 +A D E ++Q G G +D I + + + Sbjct: 31 LLEAGSGPLAADAERASGFRYSHEDWLIQFKRKGAGIGLLDPIELTKLGADWNEFNKAVG 90 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D I H D+ F G+R +F T+IA++L + GL + LG+ + Sbjct: 91 D--VPWIIHDSMQDLPGFFN-IGLRPLALFDTEIAAKLLG--RKRFGLSSVTEYYLGLTL 145 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 +K ++DWS L + YAA DV L L +L++ G+ A L+ + Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMRVELKKQGKLSWAEEEFKHLLSK 204 >gi|154278361|ref|XP_001539994.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150413579|gb|EDN08962.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 807 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + V IA+D E +C++QLS D + + ++ L + D K Sbjct: 245 LKEVTEIAIDLEHHDAHSYHGLVCLMQLSTRDKDWIVDTLKPWREELQVLNEVFSDPKIL 304 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + LK L++ + K Q Sbjct: 305 KVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNY--PKKSLKFLLEKFVNFQAEKKYQ 362 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW L YA SD +L + L Sbjct: 363 IADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNDLIE 399 >gi|193077320|gb|ABO12113.2| ribonuclease D [Acinetobacter baumannii ATCC 17978] Length = 374 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + + +L + Q++ +G V ++ + + + ++ IFH Sbjct: 25 GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFLAQQ--NIFHACG 80 Query: 84 FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI ++++ + VF T++ + Q + LK L I+I K Q SDW A Sbjct: 81 EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 LS +QL YAA+DV++L L ++L++ G + C+ L Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185 >gi|116670217|ref|YP_831150.1| 3'-5' exonuclease [Arthrobacter sp. FB24] gi|116610326|gb|ABK03050.1| 3'-5' exonuclease [Arthrobacter sp. FB24] Length = 449 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 12/180 (6%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71 A A VD E R +VQ+ G GT I G ++ Sbjct: 58 AAAIAAGTGPAGVDAERASGFRYGQRAFLVQIRREGSGTWLIDPEPFGDL------QIIN 111 Query: 72 D--EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 D E E I H D+ L G+ +F T++A+RL + GL +++LLG Sbjct: 112 DALEGVEWILHAASQDLPCLS-ELGMWPDKLFDTELAARLAG--LPRVGLAAVIEQLLGF 168 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 ++K ++DWS L + L+YAA DV L LR + E LQ G+ + A ++ Sbjct: 169 GLAKEHSAADWSTRPLPEPWLRYAALDVEVLTELREELIELLQGDGKLEYAEQEFAAILA 228 >gi|239501841|ref|ZP_04661151.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AB900] gi|332851689|ref|ZP_08433614.1| putative ribonuclease D [Acinetobacter baumannii 6013150] gi|332865936|ref|ZP_08436716.1| putative ribonuclease D [Acinetobacter baumannii 6013113] gi|332729696|gb|EGJ61031.1| putative ribonuclease D [Acinetobacter baumannii 6013150] gi|332734986|gb|EGJ66072.1| putative ribonuclease D [Acinetobacter baumannii 6013113] Length = 374 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + + +L + Q++ +G V ++ + + + ++ IFH Sbjct: 25 GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFLAQQ--NIFHACG 80 Query: 84 FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI ++++ + VF T++ + Q + LK L I+I K Q SDW A Sbjct: 81 EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 LS +QL YAA+DV++L L ++L++ G + C+ L Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185 >gi|295659299|ref|XP_002790208.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226281913|gb|EEH37479.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 827 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + +C++Q+S + + + ++ L + D K Sbjct: 244 LKEATEIAIDLEHHDVHSYHGLVCLMQISTREQDWIVDTLKPWREELQVLNEVFTDPKIL 303 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ + +F T S + Y + LK L++ + K Q Sbjct: 304 KVLHGSTMDIIWLQRDLGLYIVGLFDTYHGS-VALNYPKR-SLKFLLEKFVNFKAEKKYQ 361 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW L YA SD +L + L Sbjct: 362 MADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNSLVE 398 >gi|184158040|ref|YP_001846379.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ACICU] gi|332874500|ref|ZP_08442403.1| putative ribonuclease D [Acinetobacter baumannii 6014059] gi|183209634|gb|ACC57032.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ACICU] gi|322508359|gb|ADX03813.1| Ribonuclease D, processes tRNA [Acinetobacter baumannii 1656-2] gi|323517981|gb|ADX92362.1| ribonuclease D, processes tRNA [Acinetobacter baumannii TCDC-AB0715] gi|332737344|gb|EGJ68268.1| putative ribonuclease D [Acinetobacter baumannii 6014059] Length = 374 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + + +L + Q++ +G V ++ + + + ++ IFH Sbjct: 25 GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFLAQQ--NIFHACG 80 Query: 84 FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI ++++ + VF T++ + Q + LK L I+I K Q SDW A Sbjct: 81 EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 LS +QL YAA+DV++L L ++L++ G + C+ L Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185 >gi|226288046|gb|EEH43559.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 826 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + +C++Q+S D + + ++ L + D K Sbjct: 244 LKEATEIAIDLEHHDVHSYHGLVCLMQISTRDQDWIVDTLKPWREELQVLNEVFTDPKIL 303 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ + +F T S + Y + LK L++ + K Q Sbjct: 304 KVLHGSTMDIIWLQRDLGLYIVGLFDTYHGS-VALNYPKR-SLKFLLEKFVNFKAEKIYQ 361 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW L YA SD +L + L Sbjct: 362 MADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNSLVE 398 >gi|213408214|ref|XP_002174878.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus yFS275] gi|212002925|gb|EEB08585.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus yFS275] Length = 782 Score = 137 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 4/161 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IAVD E +C++Q+S + I+ ++ L + D K Sbjct: 233 LKQATEIAVDLEHHDYRSYSGFVCLMQISTRNQD-WIVDTLELREELECLNIVFTDPKII 291 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L FG+ + +F T A++ HGL LK+ K Q Sbjct: 292 KVLHGATMDVIWLQRDFGLYLVGLFDTYYATKALG--FEGHGLAFLLKKYCQFEADKRYQ 349 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFT-EKLQRLGR 176 +DW L E L+YA SD L + E L++ R Sbjct: 350 MADWRIRPLPKEMLKYAQSDTHFLLYVFDCLRVELLEQSSR 390 >gi|260554178|ref|ZP_05826436.1| ribonuclease D(RNase D) [Acinetobacter sp. RUH2624] gi|260404684|gb|EEW98196.1| ribonuclease D(RNase D) [Acinetobacter sp. RUH2624] Length = 374 Score = 137 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + + +L + Q++ +G V ++ + + V ++ IFH Sbjct: 25 GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFVAQQ--NIFHACG 80 Query: 84 FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI ++++ + VF T++ + Q + LK L I+I K Q SDW A Sbjct: 81 EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 LS +QL YAA+DV++L L ++L++ G + C L Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYECVLEDCRSLT 185 >gi|225679037|gb|EEH17321.1| exosome component 10 [Paracoccidioides brasiliensis Pb03] Length = 827 Score = 137 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + IA+D E + +C++Q+S D + + ++ L + D K Sbjct: 244 LKEATEIAIDLEHHDVHSYHGLVCLMQISTRDQDWIVDTLKPWREELQVLNEVFTDPKIL 303 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H DI L G+ + +F T S + Y + LK L++ + K Q Sbjct: 304 KVLHGSTMDIIWLQRDLGLYIVGLFDTYHGS-VALNYPKR-SLKFLLEKFVNFKAEKIYQ 361 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW L YA SD +L + L Sbjct: 362 MADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNSLVE 398 >gi|164655640|ref|XP_001728949.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966] gi|159102837|gb|EDP41735.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966] Length = 849 Score = 137 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 64/178 (35%), Gaps = 5/178 (2%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLV 67 + V IAVD E + +C++Q+S GD VD + + +++A L Sbjct: 258 QLQKHLEEERVTEIAVDLEHHNQRSYQGIVCLMQISTRWGDWIVDTL-VDEVRESAELLN 316 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + + H DI L G+ V +F T A+R + L L Sbjct: 317 TAFTHPDKVLVLHGADHDILWLQRDLGLYVTNLFDTFQAARALQFGA--LSLAFLLLRYT 374 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 K Q++DW L E L YA SD L + +L + G + Sbjct: 375 NFEADKRFQTADWRIRPLPREMLFYARSDTHALLYVYDCLRNELLQRGGPLAVKEVFD 432 >gi|325963026|ref|YP_004240932.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3] gi|323469113|gb|ADX72798.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3] Length = 444 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 8/178 (4%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71 A A VD E R +VQ+ G GT I +N + L Sbjct: 58 AAAIAAGTGPAGVDAERASGFRYGQRAFLVQIRREGAGTWLIDP--EPFENLDIINEALR 115 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 E I H D+ L G+ +F T++A+RL + GL +++LLG + Sbjct: 116 --GVEWILHAASQDLPCLS-ELGMWPDKLFDTELAARLAG--LPRVGLAAVIEQLLGFGL 170 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +K ++DWS L + L+YAA DV L LR + E LQ G+ + A ++ Sbjct: 171 AKEHSAADWSTRPLPEPWLRYAALDVEVLTELREELIELLQADGKLEYAEQEFAAILA 228 >gi|294943277|ref|XP_002783816.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983] gi|239896568|gb|EER15612.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 2/141 (1%) Query: 32 LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-APNLVGMLVDEKREKIFHYGRFDIAVLF 90 + R C++Q++ + +A G + + D K+ H D+ L Sbjct: 1 MQSYRGFTCLIQIATRKKDYIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQ 60 Query: 91 YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL 150 + +F T A+R+ + LK+ L G KA Q +DW LS+ Sbjct: 61 RDLSAYLCNMFDTGQAARVLELGG-GYSLKNLLDFYCGYKADKANQLADWRQRPLSERMK 119 Query: 151 QYAASDVVHLHALRLQFTEKL 171 QYA DV +L + + +L Sbjct: 120 QYARDDVHYLLYIYDRMRAQL 140 >gi|240280781|gb|EER44285.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H143] Length = 671 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + V IA+D E +C++Q+S D + + ++ L + D K Sbjct: 245 LKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFSDPKIL 304 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ H D+ L G+ + +F T A+ + LK L++ K Q Sbjct: 305 KVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNY--PKKSLKFLLEKFANFQAEKKYQ 362 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +DW L YA SD +L + Q L Sbjct: 363 IADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNDLIE 399 >gi|169796039|ref|YP_001713832.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AYE] gi|213157227|ref|YP_002319272.1| ribonuclease D [Acinetobacter baumannii AB0057] gi|215483497|ref|YP_002325714.1| Ribonuclease D(RNase D) [Acinetobacter baumannii AB307-0294] gi|301345593|ref|ZP_07226334.1| ribonuclease D [Acinetobacter baumannii AB056] gi|301510304|ref|ZP_07235541.1| ribonuclease D [Acinetobacter baumannii AB058] gi|301597268|ref|ZP_07242276.1| ribonuclease D [Acinetobacter baumannii AB059] gi|169148966|emb|CAM86843.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AYE] gi|213056387|gb|ACJ41289.1| ribonuclease D [Acinetobacter baumannii AB0057] gi|213988267|gb|ACJ58566.1| Ribonuclease D(RNase D) [Acinetobacter baumannii AB307-0294] Length = 374 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + + +L + Q++ +G V ++ + + + ++ IFH Sbjct: 25 GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSKFWKKIFLAQQ--NIFHACG 80 Query: 84 FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI ++++ + VF T++ + Q + LK L I+I K Q SDW A Sbjct: 81 EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 LS +QL YAA+DV++L L ++L++ G + C+ L Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185 >gi|330926290|ref|XP_003301407.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1] gi|311323973|gb|EFQ90519.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1] Length = 796 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 10 DIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D P AA + IA+D E +C++Q+S D + + ++ Sbjct: 219 DTPEALAAMLAELKTAKEIAIDLEHHDNRTYIGMVCLMQISTRDKDWIVDTLKPWRRKLE 278 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + D K+ H DI L G+ + +F T A+R L L+ Sbjct: 279 CLNEVFADPSILKVLHGAFMDIIWLQRDLGLYIVGLFDTFHAARALGYQA--ASLAYLLE 336 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K Q +DW LS E +YA +D L + +L Sbjct: 337 LHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYIFDNMRNEL 383 >gi|189194651|ref|XP_001933664.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979228|gb|EDU45854.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 786 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 7/167 (4%) Query: 10 DIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D P AA + IA+D E +C++Q+S D + + ++ Sbjct: 209 DTPEALAAMLAELKTAKEIAIDLEHHDNRTYIGMVCLMQISTRDKDWIVDTLKPWRRKLE 268 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + D K+ H DI L G+ + +F T A+R L L+ Sbjct: 269 CLNEVFADPSILKVLHGAFMDIVWLQRDLGLYIVGLFDTFHAARALGYQA--ASLAYLLE 326 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K Q +DW LS E +YA +D L + +L Sbjct: 327 LHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYIFDNMRNEL 373 >gi|300932462|ref|ZP_07147718.1| hypothetical protein CresD4_00200 [Corynebacterium resistens DSM 45100] Length = 429 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 78/197 (39%), Gaps = 7/197 (3%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNL 66 E D+ IA+DTE + DR ++QL G GT + K Sbjct: 7 ELDVALNALREGSGPIAIDTERAAMYRFDDRAYLIQLRREGAGTFIVDPTGHPAKLREWQ 66 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + + H D+ L G + + T+IA+RL + L+E Sbjct: 67 DALLAETP--WLLHAAHTDLPALL-ALGWQPSVLLDTQIAARLLGCHRLGL--SLLLEEF 121 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 L I+I K + ++DWS L + L YAA DV +L + ++L L R D C Sbjct: 122 LSISIPKDKGNADWSQRPLPNSMLAYAALDVEYLVPMHDMMIKELAELNRLDWYRQECEH 181 Query: 187 LMDRAE-LDLLGWENVD 202 RA L W ++ Sbjct: 182 DRLRATPLAAPQWTDMK 198 >gi|260555081|ref|ZP_05827302.1| ribonuclease D [Acinetobacter baumannii ATCC 19606] gi|260411623|gb|EEX04920.1| ribonuclease D [Acinetobacter baumannii ATCC 19606] Length = 246 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + + +L + Q++ +G V ++ + + + ++ IFH Sbjct: 25 GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFLAQQ--NIFHACG 80 Query: 84 FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI ++++ + VF T++ + Q + LK L I+I K Q SDW A Sbjct: 81 EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 LS +QL YAA+DV++L L ++L++ G + C+ L Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185 >gi|311064600|ref|YP_003971325.1| ribonuclease D [Bifidobacterium bifidum PRL2010] gi|310866919|gb|ADP36288.1| Ribonuclease D [Bifidobacterium bifidum PRL2010] Length = 428 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 8/165 (4%) Query: 28 ETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDE--KREKIFHYGRF 84 E +VQ G G V + +A + A GM D I H Sbjct: 44 ERASGFRYGHEDWLVQFKREGAGIVLLDPVALTRAGAD--WGMFNDAVGDAVWILHDSLQ 101 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 D+ G+ + +F T+IA+R+ + + GL + LG+ ++K ++DWS Sbjct: 102 DLPGF-ADIGLTPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTLAKEHSAADWSYRP 158 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 L + YAA DV L LR + +L+ G+ A + + Sbjct: 159 LPRDWRNYAALDVELLIELRRKMQRELKAQGKDGWADEEFRYALQ 203 >gi|23465521|ref|NP_696124.1| hypothetical protein BL0948 [Bifidobacterium longum NCC2705] gi|23326181|gb|AAN24760.1| narrowly conserved hypothetical protein [Bifidobacterium longum NCC2705] Length = 433 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70 + A ++A D E ++Q G G + +A + + Sbjct: 34 DALAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ G++ + +F T+IA+RL + + GL + LGI Sbjct: 94 GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++K ++DWS L + YAA DV L L L+ G+ + A + Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 204 >gi|262194484|ref|YP_003265693.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365] gi|262077831|gb|ACY13800.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365] Length = 925 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 10/162 (6%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 A A + +D ET DR LC+VQL+ + TV I A + + +L Sbjct: 768 ACAALLGEPRVGLDVET----TLFDRALCLVQLAAPEYTVVID--ARAVDDLGPVSELLA 821 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGI 129 KI H +F+ +F G+ + VF T SR R HGL LG Sbjct: 822 SRAVVKIIHNAQFE-RSVFRKLGMDIENVFDTLKVSRRLRGRKREGGHGLGAVCARELGR 880 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K +Q SDW+ L+ QL YAA D L L +FT +L Sbjct: 881 ELDKHEQRSDWTLRPLTQRQLDYAALDAEVLLVLHERFTREL 922 >gi|220912416|ref|YP_002487725.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6] gi|219859294|gb|ACL39636.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6] Length = 443 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 8/178 (4%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71 A A VD E R +VQ+ G GT I + + L Sbjct: 58 AAAIAAGTGPAGVDAERASGFRYGQRAFLVQIRREGAGTWLIDP--EPFDDLAIINDALR 115 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 E I H D+ L G+ +F T++A+RL + GL +++LLG + Sbjct: 116 --GVEWILHAATQDLPCLS-ELGMWPDKLFDTELAARLAG--LPRVGLAAVIEQLLGFGL 170 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 +K ++DWS L + L+YAA DV L LR + E LQ G+ + A ++ Sbjct: 171 AKEHSAADWSTRPLPEPWLRYAALDVEVLSELREELVELLQADGKLEYAEQEFAAILA 228 >gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148] Length = 640 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 79/182 (43%), Gaps = 7/182 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 ++ DTETL L P R +L ++QL D V I + + +L Sbjct: 15 LATSHSLCFDTETLQLQPERGKLRLLQLGARDRDTIVLIDCFQLDKGDWADLRWFFSTPD 74 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTN--QHGLKDNLKELLGINI 131 R + H FD+ L + V C+ +ASRL +HGL +K L + Sbjct: 75 RFWLAHNAVFDLGWLQEH-NIYPAGWVRCSMLASRLLTNGLPNSKHGLDSVVKRYLKKEL 133 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 SK QQ SDWS D LS+EQL+YAA+DV L L ++ R C L A Sbjct: 134 SKEQQRSDWSGD-LSEEQLEYAANDVAALMELDPILEHRISRDRLGPAFKLECRALPAMA 192 Query: 192 EL 193 ++ Sbjct: 193 QM 194 >gi|119962304|ref|YP_947556.1| ribonuclease D [Arthrobacter aurescens TC1] gi|119949163|gb|ABM08074.1| putative ribonuclease D [Arthrobacter aurescens TC1] Length = 453 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 8/174 (4%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71 A A VD E R +VQ+ G GT I N + L Sbjct: 58 AAAIAAGTGPAGVDAERASGFRYGQRAFLVQIRREGAGTWLIDP--EPFDNLDIINDALR 115 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 E I H D+ L G+ +F T++A+RL + GL +++LLG + Sbjct: 116 --GVEWILHAASQDLPCLS-ELGMWPDKLFDTELAARLAG--LPRVGLAAVIEQLLGFGL 170 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 +K ++DWS L + L+YAA DV L LR + E L+ G+ + A Sbjct: 171 AKEHSAADWSTRPLPEPWLRYAALDVEVLAELREELIELLEADGKLEYAEQEFA 224 >gi|224283333|ref|ZP_03646655.1| Ribonuclease D [Bifidobacterium bifidum NCIMB 41171] gi|313140484|ref|ZP_07802677.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171] gi|313132994|gb|EFR50611.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171] Length = 428 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 8/165 (4%) Query: 28 ETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDE--KREKIFHYGRF 84 E +VQ G G V + +A + A GM D I H Sbjct: 44 ERASGFRYGHEDWLVQFKREGAGIVLLDPVALTRAGAD--WGMFNDAVGDAVWILHDSLQ 101 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 D+ G+ + +F T+IA+R+ + + GL + LG+ ++K ++DWS Sbjct: 102 DLPGF-ADIGLTPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTLAKEHSAADWSYRP 158 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 L + YAA DV L LR + +L+ G+ A + + Sbjct: 159 LPRDWRNYAALDVELLIELRRKMQRELKSQGKDGWADEEFRYALQ 203 >gi|312132962|ref|YP_004000301.1| rnd [Bifidobacterium longum subsp. longum BBMN68] gi|311773944|gb|ADQ03432.1| Rnd [Bifidobacterium longum subsp. longum BBMN68] Length = 408 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70 + A ++A D E ++Q G G + +A + + Sbjct: 9 DALAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 68 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ G++ + +F T+IA+RL + + GL + LGI Sbjct: 69 GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 123 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++K ++DWS L + YAA DV L L L+ G+ + A + Sbjct: 124 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 179 >gi|227549136|ref|ZP_03979185.1| ribonuclease [Corynebacterium lipophiloflavum DSM 44291] gi|227078777|gb|EEI16740.1| ribonuclease [Corynebacterium lipophiloflavum DSM 44291] Length = 390 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 69/192 (35%), Gaps = 6/192 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGML 70 A A+DTE DR +VQ++ D GT L ++ Sbjct: 15 AAAQLFHGRGPCAIDTERASSFRYDDRAFLVQVNRRDAGTFLFAPEGHRDALREALAPVI 74 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 I H D+ L G+ +F T+IA+RL + L + E G+ Sbjct: 75 GGTD--WILHAAGEDLPSL-AELGLHPGTLFDTEIAARLAG--FERPNLAAMVGEFTGVT 129 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 + DWS L + YAA DVV+L AL TE L G+ + A + R Sbjct: 130 LDNGYGREDWSTIPLPLQWQAYAADDVVYLSALAEGLTEVLDAAGKLEAAEQEFEHVRTR 189 Query: 191 AELDLLGWENVD 202 W ++ Sbjct: 190 PAPAPKTWRDLK 201 >gi|270283861|ref|ZP_06193723.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093] gi|270277581|gb|EFA23435.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093] Length = 262 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 8/177 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLVDE 73 A +A D E +VQ G G + +AA + + + D Sbjct: 33 AYASGPVAADAERAAGFRYTHDDYLVQFKREGAGIALVDPQAVAADGADWAEFMQAVGDA 92 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + I H D+ G+R +F T++A+RL + GL + LG+ ++K Sbjct: 93 EF--ILHDSAQDLPGF-ADLGIRPHALFDTELAARLLG--LERFGLAYVTERYLGLTLAK 147 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++DWS L + YAA DV L LR L+ G+ + A + ++ Sbjct: 148 EHSAADWSHRPLPRDWRNYAALDVELLIELREAMMRDLKAAGKEEWARQEFAYALEH 204 >gi|224064982|ref|XP_002301621.1| predicted protein [Populus trichocarpa] gi|222843347|gb|EEE80894.1| predicted protein [Populus trichocarpa] Length = 228 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 5/167 (2%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 D+ + AVDTE L ++Q+S + + IA L + Sbjct: 63 DLAHTLS--KHKVFAVDTEQHSLRSFLGFTALIQISTRNEDYLVDTIAL-HDVMGVLAPV 119 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 D K+FH D+ L F + V +F T A + Q L L+ G+ Sbjct: 120 FADPTICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGV 177 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +K Q DW LS E L+YA +D +L + +L+ R Sbjct: 178 ATNKLLQREDWRQRPLSAEMLEYAQTDAHYLLYIAGCLIAELKLQDR 224 >gi|296453936|ref|YP_003661079.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301] gi|296183367|gb|ADH00249.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301] Length = 433 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70 + A ++A D E ++Q G G + +A + + Sbjct: 34 DALAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ G++ + +F T+IA+RL + + GL + LGI Sbjct: 94 GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++K ++DWS L + YAA DV L L L+ G+ + A + Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETLMRRDLKAAGKDEWAAEEFSH 204 >gi|237785641|ref|YP_002906346.1| Ribonuclease D [Corynebacterium kroppenstedtii DSM 44385] gi|237758553|gb|ACR17803.1| Ribonuclease D [Corynebacterium kroppenstedtii DSM 44385] Length = 462 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 7/184 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGML 70 A A +AVDTE DR ++QL G G + A P L ++ Sbjct: 67 AARVLANGHGPLAVDTERASAYRYGDRAFLLQLKRAGSGLFLVDAEACRSDMGP-LAPVV 125 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + I H R D+ L G+ + T++ + L D + L+G Sbjct: 126 --NRLTWIIHSARTDLPALL-DMGLTPHRLCDTELGG--CIAGLKKVNLGDMVDGLVGYR 180 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 ++K +WS L DE L YAA DV L L L L R C ++ Sbjct: 181 LAKEHGHENWSRRPLPDEWLDYAALDVECLLELSTTVAGLLSELDRFAWWAEECEYIRTS 240 Query: 191 AELD 194 D Sbjct: 241 TLAD 244 >gi|330863471|emb|CBX73589.1| hypothetical protein YEW_EH18310 [Yersinia enterocolitica W22703] Length = 143 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +A+DTE + +L ++QL G+ I + Q +L D Sbjct: 19 ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEKLSLIDPLPITQ--WQPFRELLQDVSVV 76 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K H G D+ V F + P+ T++ + + + G + EL G+ + K Sbjct: 77 KYLHAGSEDLEVFLNAFELMPTPMIDTQVLAAFS-GRSLSCGFAMLVNELEGVELDK 132 >gi|213692580|ref|YP_002323166.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524041|gb|ACJ52788.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458732|dbj|BAJ69353.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 433 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70 + A ++A D E ++Q G G + +A + + Sbjct: 34 DALAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ G++ + +F T+IA+RL + + GL + LGI Sbjct: 94 GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++K ++DWS L + YAA DV L L L+ G+ + A + Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETLMRRDLKAAGKDEWAAEEFSH 204 >gi|317482293|ref|ZP_07941314.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA] gi|316916309|gb|EFV37710.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA] Length = 433 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70 + A ++A D E ++Q G G + +A + + Sbjct: 34 DAMAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ G++ + +F T+IA+RL + + GL + LGI Sbjct: 94 GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++K ++DWS L + YAA DV L L L+ G+ + A + Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 204 >gi|46190415|ref|ZP_00206459.1| COG0349: Ribonuclease D [Bifidobacterium longum DJO10A] gi|189439553|ref|YP_001954634.1| ribonuclease D [Bifidobacterium longum DJO10A] gi|189427988|gb|ACD98136.1| Ribonuclease D [Bifidobacterium longum DJO10A] Length = 433 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70 + A ++A D E ++Q G G + +A + + Sbjct: 34 DAMAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ G++ + +F T+IA+RL + + GL + LGI Sbjct: 94 GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++K ++DWS L + YAA DV L L L+ G+ + A + Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 204 >gi|227546007|ref|ZP_03976056.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621937|ref|ZP_04664968.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|322688886|ref|YP_004208620.1| exonuclease [Bifidobacterium longum subsp. infantis 157F] gi|322690861|ref|YP_004220431.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|227213641|gb|EEI81490.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515128|gb|EEQ54995.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|320455717|dbj|BAJ66339.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM 1217] gi|320460222|dbj|BAJ70842.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F] Length = 433 Score = 135 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70 + A ++A D E ++Q G G + +A + + Sbjct: 34 DAMAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D I H D+ G++ + +F T+IA+RL + + GL + LGI Sbjct: 94 GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++K ++DWS L + YAA DV L L L+ G+ + A + Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 204 >gi|218442029|ref|YP_002380358.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424] gi|218174757|gb|ACK73490.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424] Length = 648 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 11/154 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV-GMLVDEKRE 76 + +DTE RL ++Q+ + V ++ + + + ++ + + E Sbjct: 23 LWLDTEIADWYTPNPRLSLIQILTNPKNIEENNVYVLDVLDKPDLIQDFINQIMKNPQIE 82 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLK--DNLKELLGINISK 133 K+FH FDI L V+ V CT KIA ++ + N LK + L + I + Sbjct: 83 KVFHNASFDIKYLG--GKEEVKNVTCTLKIAKKIGKHSLNVPNLKLKTLAEYLCNLPIVE 140 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 QQ+SDW L++ QL YA DVV+L + Sbjct: 141 DQQASDWGKRPLTELQLNYAKMDVVYLANVHHYL 174 >gi|300867748|ref|ZP_07112393.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506] gi|300334331|emb|CBN57565.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506] Length = 433 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 15/176 (8%) Query: 9 GDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLS------PGDGTVDIIRIAAGQK 61 DI A A + +DTE L ++Q+ G+ + + + + Sbjct: 8 NDIKALIAKFSQAKILWIDTEVADYK-FNPTLSLIQVLADANDLTGNASFLLDVLEQPEL 66 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHG 118 + ++ + EK+ H +DI L R + + CT +R Y H Sbjct: 67 TVDFIDKIMANPDIEKVMHNASYDIRFLGND---RAQNITCTLKLARKIPYYVLPLPNHK 123 Query: 119 LKDNLKELLGI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 LK ++ L GI N+ KA+Q DW L+++QL+YA DVV+L + E + Sbjct: 124 LKTLIEALCGIPNVDKAEQGGDWGKRPLTEKQLEYAKMDVVYLAEVHSHLIEIVDE 179 >gi|169633537|ref|YP_001707273.1| ribonuclease D, processes tRNA [Acinetobacter baumannii SDF] gi|169152329|emb|CAP01251.1| ribonuclease D, processes tRNA [Acinetobacter baumannii] Length = 374 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTE + + +L + Q++ +G V ++ + + + ++ IFH Sbjct: 25 GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFLAQQ--NIFHACG 80 Query: 84 FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI ++++ + VF T++ + Q + LK L I+I K Q SDW A Sbjct: 81 EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 LS +QL YAA+DV+ L L ++L++ G + C+ L Sbjct: 140 RPLSPQQLCYAANDVLFLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185 >gi|289610752|emb|CBI60186.1| unnamed protein product [Sordaria macrospora] Length = 134 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 29/150 (19%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 + A C D +AVDTE + LC++Q++ + I +A G P L + Sbjct: 13 LAALCTRLATSDFVAVDTEFMRENSYWPELCLIQIANTEEAAAIDPMAPGIDLTPLLNLL 72 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 +E K+ + + Q G + + LGI Sbjct: 73 TDNEDVLKV----------------------------AAMALGQGEQVGYSNLVDAYLGI 104 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVH 159 + K + +DWS L D Q+ YA +D H Sbjct: 105 TVDKGARFTDWSRRPLDDRQIDYAIADATH 134 >gi|241600516|ref|XP_002405158.1| exosome component, putative [Ixodes scapularis] gi|215502468|gb|EEC11962.1| exosome component, putative [Ixodes scapularis] Length = 518 Score = 134 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 3/147 (2%) Query: 29 TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV 88 + C++Q+S + +A + L + + K K+ H D+ Sbjct: 40 HHSYRTFQGFTCLMQISTRSSDYVVDTLAL-RHELHLLNEVFANPKIIKVLHGADMDVLW 98 Query: 89 LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDE 148 L FG+ + +F T A+R+ L L+ ++ K Q +DW L E Sbjct: 99 LQRDFGLYLVGLFDTGQAARVLGM--AHLSLAFLLRHYCHLDTDKKFQLADWRIRPLPLE 156 Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLG 175 ++YA D +L + L G Sbjct: 157 MIKYAREDTHYLLHVYDLMRRDLLAKG 183 >gi|169234702|ref|NP_001108472.1| PM-Scl autoantigen-like protein [Bombyx mori] gi|18700467|dbj|BAB85201.1| PM-Scl autoantigen-like protein [Bombyx mori] gi|22474519|dbj|BAC10623.1| PM-Scl autoantigen-like protein [Bombyx mori] Length = 451 Score = 134 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 14/166 (8%) Query: 19 YVDAIAVDTETLGLMPRRD---------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 V+ IAVD E RD C++Q+S +G II A +++ L + Sbjct: 137 AVEQIAVDVEH---HSYRDLSGLYLILGITCLIQISTDEGGDFIIDALAVREHIHKLNVV 193 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 D K+ K+FH D+ L FGV + +F T A++ LK L + G+ Sbjct: 194 FTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLG--LPALSLKFLLMKYCGV 251 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + K + +DW L D ++YA D +L + ++ Sbjct: 252 DTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKN 297 >gi|291517068|emb|CBK70684.1| Ribonuclease D [Bifidobacterium longum subsp. longum F8] Length = 398 Score = 134 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 8/173 (4%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGMLVDE 73 A ++A D E ++Q G G + +A + + D Sbjct: 2 AEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAVGDA 61 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 I H D+ G++ + +F T+IA+RL + + GL + LGI ++K Sbjct: 62 --TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAK 116 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++DWS L + YAA DV L L L+ G+ + A + Sbjct: 117 EHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 169 >gi|242050364|ref|XP_002462926.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor] gi|241926303|gb|EER99447.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor] Length = 760 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 6/164 (3%) Query: 14 ECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 E AR + A AVDTE + ++Q+S + I IA L + Sbjct: 23 EHLARLLGEERAFAVDTEQHSIRSFLGYTALMQISTQNDDYLIDTIAL-HDVMGILRPVF 81 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + KIFH D+ L F + V +F T A Q L L+ + Sbjct: 82 ANSSICKIFHGADNDVLWLQRDFHIYVVNMFDT--AKACETLSKPQKSLAYLLEVYCEVT 139 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q DW L+ E ++YA +D +L + +L Sbjct: 140 TDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAK 183 >gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] Length = 576 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 30/206 (14%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A + V + +DTET G DR+ + Q+ + + +I + + L ++ Sbjct: 15 AVASLERVPYLFIDTETTG-----DRIRLFQVGDEE-RIFVIDLFDLPEAVDVLKELIAK 68 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + + H +FD+ ++ G+ F T I S L +H L + LLG + Sbjct: 69 KGV--VGHNLKFDLKFMY-PLGIVPYATFDTMIGSFLLGY--ERHSLSHVAERLLGYTMD 123 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS---------- 182 K+ Q SDWS L+ +Q++YAA+DV+ + L + EKL LG +D Sbjct: 124 KSLQLSDWSRTALTKQQIEYAATDVLVVRELFYKMREKLNALGETDRGEELLRTRTARVF 183 Query: 183 ---------CCNFLMDRAELDLLGWE 199 F+ + A L++ G Sbjct: 184 GLTNPATVVEMAFVQEIARLEMNGIP 209 >gi|227833267|ref|YP_002834974.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975] gi|262184251|ref|ZP_06043672.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975] gi|227454283|gb|ACP33036.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975] Length = 407 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 6/178 (3%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71 A A A+DTE DR +VQ+ G GT + L +L Sbjct: 26 AARLAAGTGPFAIDTERASSYRFDDRAFLVQVRREGAGTFLFAPEHHRDELHAALAPVL- 84 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 +E + H D+ L G+ +F T++A+R L + EL + + Sbjct: 85 -NGQEWVVHAAPSDLPSL-AWLGLYPGMLFDTELAARFAGFAHP--NLAAMVLELFDVEL 140 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 K SDWS + + YAA DV L+ L + + L + D A +++ Sbjct: 141 EKGYGDSDWSETPIPRKWRNYAALDVELLNELAVTLRDILAEQDKLDWAYEEFERIVE 198 >gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus] Length = 574 Score = 133 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 84/205 (40%), Gaps = 31/205 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + +DTET G +R+ +VQL + T I + L ++ ++ Sbjct: 19 LEKSPYLYLDTETTG-----NRIRLVQLGDDEKTYVID--LYEIHDITPLRELISEKGV- 70 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H +FD+ L + F T IAS L +H L + LLG + K+ Q Sbjct: 71 -IGHNLKFDLHYLMNY-QIEPLATFDTMIASFLLGY--ERHSLNHLVGNLLGYTLDKSYQ 126 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ-------------RLGR-----SD 178 SDW A LSD QL+YAA DV L L + + L R R S Sbjct: 127 LSDWGAPVLSDAQLKYAAKDVDVLRELFPKLRDMLNELEGERGEELLKTRTARIFGLKSP 186 Query: 179 LATSCCNFLMDRAELDLLGWENVDI 203 +A F+ + A+L+ G VDI Sbjct: 187 VAIVEMAFVKEVAKLERNGLP-VDI 210 >gi|115767336|ref|XP_001198019.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus purpuratus] gi|115963545|ref|XP_001176068.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus purpuratus] Length = 228 Score = 133 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 86/197 (43%), Gaps = 20/197 (10%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGML 70 + + R I +D E + L + L +VQ+S DG D + K +L +L Sbjct: 23 DQSTRQTVVIGLDCEGVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKIL 82 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLKE 125 K+ H + D L + FGV+++ VF T IA R + R + + G K E Sbjct: 83 EHNSILKVIHDCKSDTYGLHHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFKALC-E 141 Query: 126 LLGIN--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLG 175 LLG + K ++ D W L++E + YAASD + L + L+F L L Sbjct: 142 LLGEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNGMLTPLW 201 Query: 176 RSDLATSCCNFLMDRAE 192 R DL T C M+ + Sbjct: 202 R-DLFTWSCKDTMESIQ 217 >gi|332708965|ref|ZP_08428935.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya majuscula 3L] gi|332352154|gb|EGJ31724.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya majuscula 3L] Length = 890 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 16/175 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQ-LSP-----GDGTVDIIRIAAGQKNAPNLVGML 70 + +DTE RL ++Q L+ GD + + + + ++ Sbjct: 16 LSAAKILWLDTEIADWNTPNPRLSLIQVLADPTDINGDKAYILDVLDQPEIVKDFVNYIM 75 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTR------TYTNQHGLKDNL 123 V+ EK+FH FD+ L + V CT +IA +LT + H LK Sbjct: 76 VNPNIEKVFHNASFDLRYLG--GKEQANNVTCTYQIARKLTNKKLSNPLQVSNHKLKTLA 133 Query: 124 KELLGI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 EL N+ +QSSDW L+ +QL YA D V+L + + E + S Sbjct: 134 LELCNFANVDTEEQSSDWGKRPLTQKQLNYAKMDTVYLAHVHRRLLEISDKNSWS 188 >gi|115661808|ref|XP_001202523.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus] gi|115689950|ref|XP_001201160.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus] Length = 234 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 86/197 (43%), Gaps = 20/197 (10%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGML 70 + + R I +D E + L + L +VQ+S DG D + K +L +L Sbjct: 29 DQSTRQTVVIGLDCEGVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKIL 88 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLKE 125 K+ H + D L + FGV+++ VF T IA R + R + + G K E Sbjct: 89 EHNSILKVIHDCKSDTYGLHHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFKALC-E 147 Query: 126 LLGIN--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLG 175 LLG + K ++ D W L++E + YAASD + L + L+F L L Sbjct: 148 LLGEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNGMLTPLW 207 Query: 176 RSDLATSCCNFLMDRAE 192 R DL T C M+ + Sbjct: 208 R-DLFTWSCKDTMESIQ 223 >gi|242034371|ref|XP_002464580.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor] gi|241918434|gb|EER91578.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor] Length = 882 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 23/188 (12%) Query: 2 TTIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 T D+ A + DA TE +S + + Sbjct: 260 DTPFTFVEDLKTLEVLATKLKDA----TEFA-------------ISTRTEDFIVDTLKLR 302 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + L D ++K+ H DI L F + V +F T AS++ +++ L Sbjct: 303 KYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYVCNLFDTGQASKVL--QMDRNSL 360 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRS 177 + L G+ +K Q++DW L DE ++YA D +L + +L + G + Sbjct: 361 EHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVNESSGEN 420 Query: 178 DLATSCCN 185 DL C Sbjct: 421 DLLLEVCK 428 >gi|262277377|ref|ZP_06055170.1| putative ribonuclease D [alpha proteobacterium HIMB114] gi|262224480|gb|EEY74939.1| putative ribonuclease D [alpha proteobacterium HIMB114] Length = 352 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 3/170 (1%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + VDTE +L I+ +S G V I + + + +K+ KI H G Sbjct: 22 LCVDTEFERKKTYYSKLSIITISDG-QKVFIFDLLKFPDQIKTIREIFKSKKKIKIIHGG 80 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI + V + P F T+IAS + +K+ + K Q+ DW Sbjct: 81 MQDIEIFLNH-NVNIEPFFDTQIASGFL-GLDKNISYANLVKKYFKKILDKKHQNEDWLK 138 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 L + Q++Y DV +L + L + L++ + + A + ++ + + Sbjct: 139 RPLLNSQIKYLERDVKYLKKMYLIQNKLLKKEKKLNFAKEEFSLILKKIK 188 >gi|162452521|ref|YP_001614888.1| hypothetical protein sce4245 [Sorangium cellulosum 'So ce 56'] gi|161163103|emb|CAN94408.1| rnd [Sorangium cellulosum 'So ce 56'] Length = 403 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 76/177 (42%), Gaps = 6/177 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 A DA+AVD E GL R RLC VQL+ GDG I A AP L +L Sbjct: 22 AGRADALAVDVEANGLFVYRPRLCTVQLAFREGDGIAVGIVDALRVPVAP-LARLLGAAG 80 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+ H FD +L G + T +A+R+ GL L L + + K Sbjct: 81 PPKVLHDLTFDARML-AEAGAPLGGAHDTSVAARMLGCAAT--GLGALLLSELDVKVDKQ 137 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 Q DW + D +L+Y A DV HL LR + E+ LG + C + + A Sbjct: 138 LQQHDWGRRPIEDAELRYLADDVRHLLPLRARLAERSGALGIDEEIEEECAYKLATA 194 >gi|119487547|ref|ZP_01621157.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106] gi|119455716|gb|EAW36852.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106] Length = 309 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 15/212 (7%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG------DGTVDII 54 M+ + E + + +DTE + RL ++Q+ D Sbjct: 1 MSYLTTPESIQAVISQLSSAEILWLDTEVADYKN-KPRLSLIQVLTTPNEIKSDHLYLFD 59 Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 + + + ++ + EK+FH +D+ +L + + V CT + ++ Y Sbjct: 60 VLDQPELTTLFIEEIMANPAIEKVFHNANYDLKLL---GKKQSKNVTCTLVMAKKIPYYL 116 Query: 115 ---NQHGLKDNLKELLGI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + LK +L NI K +QSSDW L+++QL+YA DVV+L + K Sbjct: 117 LPVPNYQLKTLATQLGDFTNIDKQEQSSDWGQRPLTEKQLEYAQMDVVYLAQIHQCLL-K 175 Query: 171 LQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202 LQ L D T N L R + W+ +D Sbjct: 176 LQPLASPDPTTEDLNKLATRYQEIAHDWKQLD 207 >gi|289671331|ref|ZP_06492406.1| ribonuclease D [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 293 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 1/122 (0%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+ H D+ GV RP+F T+IA+ L + ++E+ G ++ Sbjct: 1 TDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQKLVQEVTGTLLT 59 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 K + SDW LS QL+YAA DV +L A+ + T +L R L+ E Sbjct: 60 KGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQDRLGWLAEDAERLLATVE 119 Query: 193 LD 194 D Sbjct: 120 HD 121 >gi|119512751|ref|ZP_01631822.1| 3'-5' exonuclease [Nodularia spumigena CCY9414] gi|119462619|gb|EAW43585.1| 3'-5' exonuclease [Nodularia spumigena CCY9414] Length = 306 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 15/198 (7%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSP------GDGTVDIIRIAAGQKNAPNLVGMLVDE 73 + +DTE R RL ++Q+ GD + + + ++++ Sbjct: 20 AKTLWIDTEVADYKSRNPRLSLIQVLDDPTDMSGDRVNLLDVLNQPDVVGEFIEQIMINP 79 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRT--YTNQHGLKDNLKELLGIN 130 + EK+FH +D+ L R + + CT +IA ++ + LK L N Sbjct: 80 EIEKVFHNANYDLKFL---GKKRAKNITCTLEIAQKIPYYILPLPNYQLKTLATALCRFN 136 Query: 131 -ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 I K +QSSDW L++ Q++YA D ++L + LQ E LQ D T L Sbjct: 137 YIDKQEQSSDWGRRPLTEGQIEYAYLDCIYLAQVHLQLLE-LQVASNPDPKTEDLTALDA 195 Query: 190 RAELDLLGWENVDI-FSH 206 R W+ + F H Sbjct: 196 RYSELSENWQLLKSEFEH 213 >gi|310287702|ref|YP_003938960.1| Ribonuclease D [Bifidobacterium bifidum S17] gi|309251638|gb|ADO53386.1| Ribonuclease D [Bifidobacterium bifidum S17] Length = 428 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 8/165 (4%) Query: 28 ETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDE--KREKIFHYGRF 84 E +VQ G G V + +A + A GM D I H Sbjct: 44 ERASGFRYGHEDWLVQFKREGAGIVLLDPVALTRAGAD--WGMFNDAVGDAVWILHDSLQ 101 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 D+ G+ + +F T+IA+R+ + + GL + LG+ +K ++DWS Sbjct: 102 DLPGF-ADIGLAPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTFAKEHSAADWSYRP 158 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 L + YAA DV L LR + +L+ G+ A + + Sbjct: 159 LPRDWRNYAALDVELLIELRRKMQRELKVQGKDGWADEEFRYALQ 203 >gi|169617554|ref|XP_001802191.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15] gi|111059251|gb|EAT80371.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15] Length = 805 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 7/169 (4%) Query: 10 DIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D P A + IAVD E + ++Q+S D + + ++ Sbjct: 236 DTPEAVAEMLAELKTAKEIAVDLEHHDNRSYIGMVSLMQISTRDKDWIVDTLKPWRRKLE 295 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + D K+ H DI L G+ + +F T A+R L L+ Sbjct: 296 CLNEVFADPNILKVLHGAYMDIMWLQRDLGLYIVGLFDTHHAARSLGYPGG--SLAYLLE 353 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + K Q +DW L E +YA +D L + +L Sbjct: 354 RHVQFKAQKQYQLADWRIRPLGKELFEYARADTHFLLYIFDNMRNELVE 402 >gi|300864534|ref|ZP_07109398.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300337492|emb|CBN54546.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 880 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 13/165 (7%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQL-SPGDGT----VDIIRIAAGQKNAPNLVGM-LVDE 73 + I DTE RL ++Q+ + + I+ + + N + + + + Sbjct: 20 AEIIWADTEVADWQTPNPRLSLIQILADPNDLTGDFAYILDVLDKPELVENFIDLIMANP 79 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLT--RTYTNQHGLKDNLKELLGI- 129 EK+FH +D+ L + + V CT KIA +L+ R LK L Sbjct: 80 TIEKVFHNSSYDLRYL---GKTQAKNVTCTWKIAQKLSLERLQVPNRQLKTLAAGLCKFT 136 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 I+K +Q+SDW L+ +QL YA D V+L + + E + Sbjct: 137 EINKQEQTSDWGRRPLTQKQLDYAKMDTVYLAGVHRRLLELTNQK 181 >gi|186685790|ref|YP_001868986.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] gi|186468242|gb|ACC84043.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] Length = 306 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 15/198 (7%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSP------GDGTVDIIRIAAGQKNAPNLVGMLVDE 73 + + +DTE R RL ++Q+ GD + + A + ++++ Sbjct: 20 IKTLWIDTEVADYKSRNPRLSLIQVLDNPQDMSGDRVYLLDVLDQPNIIAEFIEKIMINS 79 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHGLKDNLKELLGIN 130 EK+FH +D+ L + + + CT + + + LK L N Sbjct: 80 AIEKVFHNASYDLKFLGN---KKAKNITCTLEMVKKIPYHILPLPNYQLKTIATALCSFN 136 Query: 131 -ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 I K +Q+SDW L++EQ++YA D ++L + LQ + AT L Sbjct: 137 NIDKQEQTSDWGKRPLTEEQIEYAYLDCIYLAQIHSNLLS-LQAKANPEPATEDLTSLST 195 Query: 190 RAELDLLGWENVDI-FSH 206 R W+ ++ F H Sbjct: 196 RYSQLEQQWKLLNSEFEH 213 >gi|312218247|emb|CBX98193.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria maculans] Length = 783 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 7/170 (4%) Query: 10 DIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D P A + IAVD E + ++Q+S + + + ++ Sbjct: 219 DTPEALASMLAELKTAKEIAVDLEHHDNRSYIGIVSLMQISTRNQDWIVDTLKPWRRKLE 278 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L + + K+ H DI L G+ V +F T A+R L L Sbjct: 279 CLNEVFANPDIIKVLHGAYMDIMWLQRDLGLYVVGLFDTYHAARSLGYPG--ASLAYLLD 336 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +G K Q +DW L E +YA +D L + +L Sbjct: 337 RFIGFKAQKQYQIADWRIRPLGKELFEYARADTHFLLYIFDNMRNELVEK 386 >gi|115665303|ref|XP_001177704.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus] gi|115976409|ref|XP_001186302.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus] Length = 579 Score = 130 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 20/186 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVDEK 74 R I +D E +GL L +VQ+S DG D + K +L +L Sbjct: 387 RETVVIGLDCEGVGLGRAGGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKILEHNS 446 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLKELLGI 129 K+ H + D L++ FGV+++ VF T IA R L R + Q G K ELLG Sbjct: 447 ILKVIHDCKSDAYSLYHGFGVKLKNVFDTSIAMRTIMEQLNRNRSYQVGFKALC-ELLGE 505 Query: 130 N--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDL 179 + K ++ D W L++E + YAASD + L + L+ L L DL Sbjct: 506 GASHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLVPSVYLKINGMLTPL-WQDL 564 Query: 180 ATSCCN 185 T C Sbjct: 565 FTWSCK 570 >gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] Length = 586 Score = 130 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 25/220 (11%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETL-----GLMPRRDRLCIVQLSPGDGTVDIIRIA 57 E + + + + +DTE + + D++ ++Q+ + T I + Sbjct: 4 NYITQENQLESLKVLQDKPYLYLDTEVMIKDFENIDFFNDKIRLIQIGDEENTFVIDLLK 63 Query: 58 AGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN- 115 + N + ++ ++ I H +FD+ L + + VF T IAS++ N Sbjct: 64 INPEVVKNHIQNLIENKGI--IGHNLKFDLKFLKTNLNILPKIVFDTMIASQILAKGDNS 121 Query: 116 -QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +H L + K + +++ K Q S W A DLS EQ++YAA D+ L L + +L + Sbjct: 122 QRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSPEQIEYAAKDIDALRHLFKEEKNQLNQD 181 Query: 175 GR---------------SDLATSCCNFLMDRAELDLLGWE 199 + +A FL E++L G Sbjct: 182 NLHKKASGETFKVFGVINPVAALEMAFLPALVEIELSGIP 221 >gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] Length = 587 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 27/224 (12%) Query: 1 MTTIR--VHEGDIPAECAARYVDAIAVDTETL-----GLMPRRDRLCIVQLSPGDGTVDI 53 M I E + + + + +DTE + + D++ ++Q+ + T I Sbjct: 1 MMDINYITQENQLESLKVLQDTPYLYLDTEVMIKDFENIDFFNDKIRLIQIGDEENTFVI 60 Query: 54 IRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 + + N + ++ ++ I H +FD+ L + + VF T IAS++ Sbjct: 61 DLLKINPEVVKNHIQNLIENKGI--IGHNLKFDLKFLKTNLNILPKIVFDTMIASQILAK 118 Query: 113 YTN--QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + +H L + K + +++ K Q S W A DLS EQ++YAA D+ L L + + Sbjct: 119 GDSNQRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSSEQIEYAAKDIDTLRHLFKEEKNQ 178 Query: 171 LQRLGR---------------SDLATSCCNFLMDRAELDLLGWE 199 L + + +A FL E++L G Sbjct: 179 LNQDNLHKKASGETFKVFGVINPVAALEMAFLPALVEIELSGIP 222 >gi|168005501|ref|XP_001755449.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693577|gb|EDQ79929.1| predicted protein [Physcomitrella patens subsp. patens] Length = 824 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 3/158 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + I VD E + R + ++Q+S + IA + L + + Sbjct: 82 LKGEKEIGVDIEHHHVRSFRGFIPLIQISTYSTDYLVDAIAL-HDDMHLLHPIFANPAIL 140 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 KIFH D L F + + +F T A + Q L L+ G++ K Q Sbjct: 141 KIFHGADNDSLWLQRDFHIYIVNLFDTARACDVLGK--PQRSLAYLLQLYCGVSTKKIYQ 198 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 SDW L E YA +D +L + L + Sbjct: 199 RSDWRVRPLPAEMEIYARTDAHYLLYIAQCMRANLVQA 236 >gi|299473136|emb|CBN78712.1| conserved unknown protein [Ectocarpus siliculosus] Length = 1278 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 3/135 (2%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A IAVD E +C++QLS + + + + L+ + D Sbjct: 329 AREACREIAVDLEHHSFRTFLGVVCLMQLSTREQDYIVDPLKLRGEMG-RLLPVFSDPNI 387 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+FH D+ L G+ + +F T A+R + GL L++ K Sbjct: 388 VKVFHGSDSDVLWLQRDLGLYLVNMFDTGQAAR--QLGLPSFGLAHLLEKFCDFVPDKKH 445 Query: 136 QSSDWSADDLSDEQL 150 Q SDW L + L Sbjct: 446 QLSDWRMRPLPADML 460 >gi|17229189|ref|NP_485737.1| hypothetical protein all1697 [Nostoc sp. PCC 7120] gi|17135517|dbj|BAB78063.1| all1697 [Nostoc sp. PCC 7120] Length = 302 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 13/161 (8%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP------GDGTVDIIRIAAGQKNAPNLVGMLVD 72 + +DTE R RL ++Q+ GD + + A + ++V+ Sbjct: 19 QATTLWIDTEVADYKSRNPRLSLIQVLDDPNDMSGDRVYLLDVLDQPDLVADFVDKIMVN 78 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTN--QHGLKDNLKELLGI 129 EK+FH FD+ +L + R + CT +IA ++ + L+ K L Sbjct: 79 TNIEKVFHNANFDVKLLGN---KQARNITCTLEIAKKIPYYLLPVQNYQLQSLAKLLCNF 135 Query: 130 N-ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 N I K +Q S+W LS+EQ++YA D ++L + + E Sbjct: 136 NNIDKQEQGSNWGQRPLSEEQIEYAYLDCIYLAQIHRRLLE 176 >gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA] gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei] Length = 1808 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 5/183 (2%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKRE 76 + +D ET GL +++ ++Q+S + V I + N L +L DE Sbjct: 1255 GIKYCGLDMETTGLEVFGEKIRLIQISVENYPVIIYDMFNITNNNILDGLRKILNDENIV 1314 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKA 134 KI G+FD L Y + +F T IAS+L N +G K + +++ L + + K Sbjct: 1315 KIIQNGKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQ 1373 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 QQ+S W+ L++ QL YAA D L L + +E+++ + ++ +++ Sbjct: 1374 QQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQIKAENMQIVNDIENKCILPICDME 1433 Query: 195 LLG 197 L G Sbjct: 1434 LNG 1436 >gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 964 Score = 128 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 7/163 (4%) Query: 21 DAIAVDTETLGLMPRRDR----LCIVQLSPGDGTVDIIRIAAGQKNAPNL-VGMLVDEKR 75 +D E +D+ +C +Q+S + I +A + L + +++ + Sbjct: 773 SIFGIDLEYYSEN--KDKNLGFVCTIQISTVNMDFMIDAMALRNQINQLLNKSLFLNKTK 830 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI H DI L F + + +F T A + + + LK+ ++ LG+ + K+ Sbjct: 831 IKILHGCENDIKWLKNDFDIDIVNLFDTMFAEMIIKNKQQSYSLKNLSQDYLGVELDKSY 890 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 Q SDW L + YA D L L + L + Sbjct: 891 QISDWRIRPLPTPMMNYARVDSFILLRLFPIMKQMLTSKNLLN 933 >gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii] Length = 1813 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 5/183 (2%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKRE 76 + +D ET GL +++ ++Q++ + V I + N L +L DE Sbjct: 1260 GIKYCGLDMETTGLEVFGEKIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIV 1319 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKA 134 KI G+FD L Y + +F T IAS+L N +G K + +++ L + + K Sbjct: 1320 KIIQNGKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQ 1378 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 QQ+S W+ L++ QL YAA D L L + +E++ + ++ +++ Sbjct: 1379 QQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQITAENMQIVNDIENKCILPICDME 1438 Query: 195 LLG 197 L G Sbjct: 1439 LNG 1441 >gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi] gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi] Length = 1429 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 5/183 (2%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKRE 76 + +D ET GL +++ ++Q++ + V I + N L +L DE Sbjct: 1241 GIKYCGLDMETTGLEVFGEKIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIV 1300 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKA 134 KI G+FD L Y + +F T IAS+L N +G K + +++ L + + K Sbjct: 1301 KIIQNGKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQ 1359 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 QQ+S W+ L++ QL YAA D L L + +E++ + ++ +++ Sbjct: 1360 QQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQIVAENMQIVNDIENKCILPICDME 1419 Query: 195 LLG 197 L G Sbjct: 1420 LNG 1422 >gi|219126108|ref|XP_002183306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405062|gb|EEC45006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 311 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 28/183 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS-------------------------PGDGTV 51 +V IA+D E +C++QLS P Sbjct: 131 LAHVTEIALDLEAHSYRSFAGMVCLLQLSFRDHHYHDKDDHDTPNDNDDTNDNSPTVHNF 190 Query: 52 DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111 I I L+ +L + K+ H DIA L FG+ + +F T A+R + Sbjct: 191 LIDTIVLKPYLNEVLLPVLTNPDVVKVLHGADSDIAWLQRDFGLYIVNLFDTMRAARALK 250 Query: 112 TYTNQHGLKDNLKELL-GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + L+ + G++ K+ Q +DW L + QYA D +L + + Sbjct: 251 --FPRASYAYVLQHYVDGLHADKSAQLADWRVRPLPEALQQYAIQDTAYLLDIYDRMRYD 308 Query: 171 LQR 173 L + Sbjct: 309 LSQ 311 >gi|75906891|ref|YP_321187.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] gi|75700616|gb|ABA20292.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] Length = 302 Score = 127 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 25/189 (13%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP------GDGTVDIIRIAAGQKNAPNLVGMLVD 72 + +DTE R RL ++Q+ GD + + A + ++V Sbjct: 19 QATTLWIDTEVADYKSRNPRLSLIQVLDDPDDMSGDRVYLLDVLDQPDLVANFVEKIMVS 78 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTN--QHGLKDNLKELLGI 129 EK+FH FD+ +L + + + CT +IA ++ + L+ L Sbjct: 79 TNIEKVFHNASFDVKLLGN---KQAKNITCTLEIAKKIPYHLLPVQNYQLQSLATLLCNF 135 Query: 130 N-ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 N I K +QSS+W LS+EQ++YA D ++L + + + Sbjct: 136 NNIDKQEQSSNWGRRPLSEEQIEYAYLDCIYLAQIHRRLLDLQIESN------------P 183 Query: 189 DRAELDLLG 197 D A +D+ Sbjct: 184 DPATVDITA 192 >gi|254416561|ref|ZP_05030312.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176527|gb|EDX71540.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] Length = 303 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 19/196 (9%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQ-LSPGD----GTVDIIRIAAGQKNAPNLVG-MLVD 72 + +DTE +L ++Q L+ G+ +V I+ + + A + ++ + Sbjct: 19 QASILWLDTEVADYKTDTPQLSLIQVLADGNDLTAESVGILDVLYQPELADEFIAKVMYN 78 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHGLKDNLKELLGI 129 EK+FH +D L + + V CT ++ Y + LK E GI Sbjct: 79 PAIEKVFHNASYDRKFLGKH---KAKNVTCTLELAKTIPYYRLPVPNYQLKTLT-EYFGI 134 Query: 130 --NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + K +Q+ DW LS QL YAA DVV++ L + L + D AT L Sbjct: 135 CPQVDKTEQTGDWRKRPLSPRQLDYAAKDVVYVAHLHRHLLD----LAQPDPATEDIEAL 190 Query: 188 MDRAELDLLGWENVDI 203 R W+ +D Sbjct: 191 TLRYRQIEHRWKQLDT 206 >gi|254411454|ref|ZP_05025231.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420] gi|196181955|gb|EDX76942.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420] Length = 862 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 16/164 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQL------SPGDGTVDIIRIAAGQKNAPNLVGML 70 + +DTE RL ++Q+ GD + + ++ Sbjct: 16 LATYPTLWLDTEVADWQTSNPRLSLIQILADPTDRTGDRAYIFDVLDNPDIVRDFVAQIM 75 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLT---RTYTNQHG---LKDNL 123 V+ EK+FH FD+ L + + V CT K+ +LT R Q LK Sbjct: 76 VNPNIEKVFHNASFDLKFLG--GKHQAQNVTCTFKLVRKLTKKSRKTPLQVSNKQLKTLA 133 Query: 124 KELLGI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 EL N+ K +QSSDW L+ +QL YA D V+L + Sbjct: 134 VELCHFTNVDKTEQSSDWGQRPLTPKQLHYAKMDTVYLAHVHRH 177 >gi|28493361|ref|NP_787522.1| ribonuclease D [Tropheryma whipplei str. Twist] gi|28476402|gb|AAO44491.1| ribonuclease D [Tropheryma whipplei str. Twist] Length = 391 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 12/189 (6%) Query: 21 DAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 A+DTE ++ +VQL I + N L ++ E+ + Sbjct: 37 GPFAIDTERANRFKYDQEFPWLVQLYRRPTGCFIFDTSKI-DNLSKLGDLIGSEEV--VI 93 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H DI L G+ + +F T+IA RL + L ++ + + + K + + Sbjct: 94 HAAINDIKSLKR-VGIHITNLFDTEIACRLLN--IPKVNLSYVTEKFINVKLRKEYSTVN 150 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN--FLMDRAELDLLG 197 WSA L+ + L+YA DV HL L L+ + ++A + F++ + + ++ Sbjct: 151 WSARPLNKKYLEYAEGDVKHLLDLSQALKTALRAENKLEIAKEEFSHVFMVVKHQSEI-- 208 Query: 198 WENVDIFSH 206 + +D F H Sbjct: 209 -DKLDKFCH 216 >gi|323144458|ref|ZP_08079061.1| putative ribonuclease D [Succinatimonas hippei YIT 12066] gi|322415773|gb|EFY06504.1| putative ribonuclease D [Succinatimonas hippei YIT 12066] Length = 384 Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 11/172 (6%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D I++DTE + + L ++QL + T + +A K+ LV L + K + Sbjct: 31 DFISLDTEFVRINTLFPILGLLQLRFKNETYLVDPVALNIKD---LVRTLTETKAAVLIF 87 Query: 81 YGRFDIAVL---FYTFGV---RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 G D+ +L G + V+ ++ + + GL +KEL+G + K Sbjct: 88 SGDEDLEILVKIARDNGFASLLPQKVYDLQLLAAF-DDFLYGKGLNAYVKELVGAELEKD 146 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 +DW LS+ QL YAA DV +L + +++ R + Sbjct: 147 CTRTDWLYRPLSENQLIYAALDVEYLEEMYKLLYKRID-EKRFSYFLAEMEL 197 >gi|302803751|ref|XP_002983628.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii] gi|300148465|gb|EFJ15124.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii] Length = 201 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 5/163 (3%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ + AVDTE + ++Q+S I IA L Sbjct: 42 EDLAEVLSEE--SEFAVDTEQHSIRSFLGFTALIQISTYKRDYLIDAIAL-HDEMEILRP 98 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + + K+FH DI L F + V +F T A + Q L L+ Sbjct: 99 VFANAAICKVFHGADSDILWLQRDFHIYVVNLFDTARACDVLGK--PQRSLAYLLQTYCN 156 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 I+ +KA Q SDW L ++ L YA +D L + + +L Sbjct: 157 ISTNKAFQKSDWRQRPLPEDILLYARTDAHFLLYIARKLYSEL 199 >gi|28572529|ref|NP_789309.1| ribonuclease [Tropheryma whipplei TW08/27] gi|28410661|emb|CAD67047.1| putative ribonuclease [Tropheryma whipplei TW08/27] Length = 360 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 12/189 (6%) Query: 21 DAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 A+DTE ++ +VQL I + N L ++ E+ + Sbjct: 6 GPFAIDTERANRFKYDQEFPWLVQLYRRPTGCFIFDTSKI-DNLSKLGDLIGSEEV--VI 62 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H DI L G+ + +F T+IA RL + L ++ + + + K + + Sbjct: 63 HAAINDIKSLKR-VGIHITNLFDTEIACRLLN--IPKVNLSYVTEKFINVKLRKEYSTVN 119 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN--FLMDRAELDLLG 197 WSA L+ + L+YA DV HL L L+ + ++A + F++ + + ++ Sbjct: 120 WSARPLNKKYLEYAEGDVKHLLDLSQALKTALRAENKLEIAKEEFSHVFMVVKHQSEI-- 177 Query: 198 WENVDIFSH 206 + +D F H Sbjct: 178 -DKLDKFCH 185 >gi|319441607|ref|ZP_07990763.1| hypothetical protein CvarD4_07546 [Corynebacterium variabile DSM 44702] Length = 459 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 71/181 (39%), Gaps = 11/181 (6%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 AE A +AVDTE DR +VQL ++ A L +L D Sbjct: 35 AEVLATGSGPVAVDTERASGFRFDDRAWLVQLRRAGAGTHLVDPAVVPDAGELLAPVLND 94 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H D+ L T G + T+IA RL Q GL L+ELLG+ ++ Sbjct: 95 --LPWVLHAAHTDLPAL-TTLGWHTPLLHDTQIAGRLLGFG--QIGLAGMLEELLGVTVA 149 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHA----LRLQFTEKLQRLG--RSDLATSCCNF 186 K + DWSA L + L YAA DV L + + + G R C+ Sbjct: 150 KDKGREDWSARPLPADMLTYAALDVELLVELLATAMSRLRRRSEAEGLDRVGWYRQECDH 209 Query: 187 L 187 + Sbjct: 210 V 210 >gi|255325116|ref|ZP_05366222.1| ribonuclease D [Corynebacterium tuberculostearicum SK141] gi|255297681|gb|EET76992.1| ribonuclease D [Corynebacterium tuberculostearicum SK141] Length = 414 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 10/189 (5%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 A+DTE DR +VQ+ G GT+ ++ L +L E Sbjct: 32 GTGPFAIDTERASGYRYDDRAFVVQIRRRGAGTMLFAPEGHREELTAALAPVL--NGTEW 89 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ L G+ +F T++A+RL + L + EL + + K Sbjct: 90 IIHAAHSDLPCLG-WLGLFPGSIFDTELAARLAG--FERPNLGTMVAELFDVELEKGYGD 146 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL- 196 +DWS LS+E YAA DV L L + L + D A + ++ D Sbjct: 147 ADWSTPQLSEELKAYAALDVELLLELADALRDILAEQDKMDWALEEFSAIVQEHSGDFAP 206 Query: 197 ---GWENVD 202 W ++ Sbjct: 207 QPHTWRDLK 215 >gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] Length = 586 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 83/223 (37%), Gaps = 26/223 (11%) Query: 1 MTTIRVHEGDIPAE-CAARYVDAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDII 54 M ++ A + + + +DTE + D++ ++Q+ + I Sbjct: 1 MVNYITQSKELTALKEKLKDLPYVYLDTEVAVKDFEKVDYFNDKVRLIQIGTQEDIFVID 60 Query: 55 RIAAGQKNA-PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 + L +L + + H +FD+ L F V + VF T IAS++ Sbjct: 61 AFKVERDTLKEFLKEVLESKGI--VGHNLKFDLKFLATNFDVYPKVVFDTFIASKILAKG 118 Query: 114 TNQ--HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 N H L L + K Q+S W ++L+ EQ++Y+A D+ L ++ + +L Sbjct: 119 DNSQKHSLSAVAVRLTDEEVDKTYQTSPWWVENLTKEQIEYSAKDIEVLRSIFREQVVRL 178 Query: 172 QRL-------GRS--------DLATSCCNFLMDRAELDLLGWE 199 G + +A FL ++L G Sbjct: 179 NEEQTHLKSSGETYKVFGVVNPVAALEMAFLPCLVSIELSGIP 221 >gi|229817486|ref|ZP_04447768.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM 20098] gi|229785275|gb|EEP21389.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM 20098] Length = 430 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 8/165 (4%) Query: 28 ETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 E +VQ G D I + A + + D I H Sbjct: 43 ERASGFRYGHEDWLVQFKREGVGIFLFDPIALTAAGADWGRFNRAVGDA--TWIIHDAMM 100 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 D+ G+ + +F T++A+R+ ++ GL + LGI ++K ++DWS Sbjct: 101 DLPGFAQ-IGMTPQRLFDTEMAARMLG--LSRFGLAAVTERYLGITLAKEHSAADWSYRP 157 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 L + YAA DV L L + L+ G+ + A ++ Sbjct: 158 LPRDWRNYAALDVELLIELERKMRADLKASGKEEWAEEEFRHILA 202 >gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 532 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 9/173 (5%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 DTET L R ++ ++ S G V L +L D+ K+FH +FD Sbjct: 10 DTETDSLDFRTGKIKLIAFSKGLNEVV-----TTTSVDERLKSILNDKNIIKVFHNAKFD 64 Query: 86 IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD-WSADD 144 + G RV CT + +++ + LK K+ L +++ K+ Q SD W + Sbjct: 65 VGFFQSK-GYRVNNYHCTLLMAQVLGE--EKLSLKALAKKYLDVDMDKSMQHSDNWQETE 121 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 ++ E + YA DV H AL + + L + L L+ G Sbjct: 122 ITQEHIDYAVKDVEHTRALYYKLLDLLVENNLLTVYERERRALPAIVMLESNG 174 >gi|323453102|gb|EGB08974.1| hypothetical protein AURANDRAFT_63530 [Aureococcus anophagefferens] Length = 549 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 65/167 (38%), Gaps = 14/167 (8%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 VD VD E C+VQ+S D + +A + L D K Sbjct: 224 EGVDVFGVDLEAHAEHSYESIACLVQISTADVDYVVDALAL-RFELRALAPAFADPNIRK 282 Query: 78 IFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGI------ 129 +FH + DI L FG+ V VF T+ A+R R GL G+ Sbjct: 283 VFHACQGVDIPRLQRDFGIFVVNVFDTQEAARCAARVLGAPLGLVALYAS-AGVISTARR 341 Query: 130 ----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 ++ +A Q+ DW + LS QL+YA D HL L +L+ Sbjct: 342 DELESLKRAYQNCDWRSRPLSPAQLEYAVCDARHLVDLEAYLNRELR 388 >gi|306836261|ref|ZP_07469243.1| ribonuclease D [Corynebacterium accolens ATCC 49726] gi|304567853|gb|EFM43436.1| ribonuclease D [Corynebacterium accolens ATCC 49726] Length = 406 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 13/198 (6%) Query: 13 AECAAR---YVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVG 68 AE AAR A A+DTE DR ++Q+ G GT+ + A L Sbjct: 23 AEAAARLQAGTGAFAIDTERASGYRYDDRAFLIQIRRRGAGTMLFAPEGHRAELAQALAP 82 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L + I H D+ L G+ +F T++A+R T + L + EL Sbjct: 83 VLNGQH--WIIHAAPSDLPSLG-WLGLFPGTLFDTELAARF--TGFPRTNLGAIIAELFD 137 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 + + K DWS LS+E YAA DV L L + L + + C ++ Sbjct: 138 VQLGKGHGDDDWSIPQLSEEMRAYAALDVELLLELATTLRDILAEQEKLEWMLEECAAIV 197 Query: 189 DRAELDLL----GWENVD 202 + D W ++ Sbjct: 198 AKHAHDTSPQPGSWRDIK 215 >gi|307154950|ref|YP_003890334.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] gi|306985178|gb|ADN17059.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] Length = 305 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 13/166 (7%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQL------SPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 + + +DTE ++ RL ++Q+ G T I + + + ++ +E Sbjct: 20 LKILWLDTEVADFKSQKPRLSLIQMLAYPQDKDGSRTFIIDVLNKRDEVDYFIEKIMSNE 79 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG---LKDNLKELLG-I 129 + K+FH + D+ L G + + + CT ++ + LK + L Sbjct: 80 QINKVFHNAQHDLKFL---GGKKAQNITCTMKLAQSIPYHILPVSSLTLKTLTEHLTEFK 136 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 N+SK +Q SDW LSD+QL YA D ++L + + E +++ Sbjct: 137 NVSKEEQGSDWGQRPLSDQQLHYAKMDPIYLAHIHQKLLELIKKNN 182 >gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] Length = 662 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 81/244 (33%), Gaps = 48/244 (19%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I E + A + +D ET GL P + ++Q++ + V +I G N Sbjct: 50 ISDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLIQIAAPNRPVILIEF-RGITNK 108 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV--RPVFCTKIASRLT----------- 110 L + K K+ H F+I L G+ T + S+L Sbjct: 109 ETLRRFIEHPKIPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEED 168 Query: 111 --------------------------RTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 R + L + LG ++ K+ Q SDW Sbjct: 169 AKTGVLPIPDLTRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGK-P 227 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE-------LDLLG 197 L+ EQLQYAA+D + LR K+ +D L A+ LDL Sbjct: 228 LTQEQLQYAANDAAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLDLDR 287 Query: 198 WENV 201 W + Sbjct: 288 WGEL 291 >gi|311739578|ref|ZP_07713413.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035] gi|311305394|gb|EFQ81462.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035] Length = 414 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 10/189 (5%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 A+DTE DR +VQ+ G GT+ ++ L +L E Sbjct: 32 GTGPFAIDTERASGYRYDDRAFVVQIRRRGAGTMLFAPEGHREELTAALAPVL--NGAEW 89 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H D+ L G+ +F T++A+RL + L + EL + + K Sbjct: 90 IIHAAHSDLPCLG-WLGLFPGSIFDTELAARLAG--FERPNLGTMVGELFDVELEKGYGD 146 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL- 196 +DWS LS+E YAA DV L L + L + D A + ++ D Sbjct: 147 ADWSTPQLSEELKAYAALDVELLLELADALRDILAEQDKMDWALEEFSAIVQEHSGDFAP 206 Query: 197 ---GWENVD 202 W ++ Sbjct: 207 QPHTWRDLK 215 >gi|790213|gb|AAB65809.1| ORFQ [Dichelobacter nodosus] Length = 289 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 + H D+ L + G + +F T+I L + ++ LGI++ K++ Sbjct: 10 VIHAASQDLE-LMHLHGQLLPNMFRDTQIGFSLISPH-KAISYLGFVQHYLGIDLDKSET 67 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 SDW A L++EQ QYAA+DV L LQRL R C L+ Sbjct: 68 RSDWLARPLTNEQCQYAANDVGLLLQAYPLLCADLQRLNRMHWWQEECQNLL 119 >gi|118379200|ref|XP_001022767.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89304534|gb|EAS02522.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 722 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 7/151 (4%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + +DTE LC++Q+S D +D++ I + Q L + + + KIF+ Sbjct: 47 LGIDTEQSFAKTYEGFLCLIQISTDQNDYLIDVLGINSKQGINECLSKVFLCKDIIKIFY 106 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ----Q 136 G+ DI L F + V F K + + + L + + K + Q Sbjct: 107 AGQQDILWLKRDFDLSVVNYFDVKECASFLKKSDDN-SLIQLIDRYCNYKLDKQKKKELQ 165 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 S+WS LS EQL YAA D +L +R + Sbjct: 166 VSEWSNRPLSKEQLDYAALDSHYLIKIRYEL 196 >gi|240949173|ref|ZP_04753520.1| ribonuclease D [Actinobacillus minor NM305] gi|240296476|gb|EER47112.1| ribonuclease D [Actinobacillus minor NM305] Length = 121 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 7/116 (6%) Query: 3 TIRVH----EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 TI H + C A AIA+DTE + + +L ++QL G+ I Sbjct: 4 TIHYHWVSTSQQLDEVCQKAANKKAIALDTEFIRIRSFYPQLGLIQLFDGEQVSLIDP-- 61 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 ++ + + +L + K+ H D+ V Y F P+ T++ + Sbjct: 62 NSIEDFSSFIALLANPDVIKVLHACSEDLEVFEYRFKQLPTPLVDTQVVAGFLNKG 117 >gi|321452793|gb|EFX64106.1| hypothetical protein DAPPUDRAFT_66464 [Daphnia pulex] Length = 181 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 3/124 (2%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I VD E R C++Q+S I + P L + D KIF Sbjct: 61 VIGVDLEHHSDRSYRGITCLMQISTDKTDYIIDTLKLWDHLQP-LNKVFCDPNIVKIFQG 119 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L FG+ V +F T A+ L GL L+ +++ K Q DW Sbjct: 120 ADSDVIWLQRDFGIYVVNLFDTFQAASLLGFQKK--GLSFLLQHYCQVHVDKKYQLEDWR 177 Query: 142 ADDL 145 L Sbjct: 178 IRPL 181 >gi|227503491|ref|ZP_03933540.1| ribonuclease D [Corynebacterium accolens ATCC 49725] gi|227075994|gb|EEI13957.1| ribonuclease D [Corynebacterium accolens ATCC 49725] Length = 406 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 13/198 (6%) Query: 13 AECAAR---YVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVG 68 AE AAR A+DTE DR ++Q+ G GT+ + L Sbjct: 23 AEAAARLQAGTGPFAIDTERASGYRYDDRAFLIQIRRRGAGTMLFAPEGHRAELTQALAP 82 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L + I H D+ L G+ +F T++A+R + + L + EL Sbjct: 83 VLNGQH--WIIHAAPSDLPSLG-WLGLFPGTLFDTELAARFAGFH--RTNLGAIIAELFD 137 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 + + K DWS LS+E YAA DV L L + L + D C ++ Sbjct: 138 VQLEKGHGDDDWSIPRLSEEMRAYAALDVELLLELATTLRDILAEQEKLDWMVEECAAIV 197 Query: 189 DRAELDLL----GWENVD 202 + D W ++ Sbjct: 198 AKHANDTAPQPHSWRDIK 215 >gi|321452292|gb|EFX63714.1| hypothetical protein DAPPUDRAFT_66837 [Daphnia pulex] Length = 181 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 3/124 (2%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I VD E R C++Q+S I + P L + D KIF Sbjct: 61 VIGVDLEHHSDRSYRGITCLMQISTDKTDYIIDTLKLWDHLQP-LNKVFCDPNIVKIFQG 119 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L FG+ V +F T A+ L GL L+ +++ K Q DW Sbjct: 120 ADSDVIWLQRDFGIYVVNLFDTFQAASLLGFQKK--GLSFLLQHYCQVHVDKKYQLEDWR 177 Query: 142 ADDL 145 L Sbjct: 178 IRPL 181 >gi|167533742|ref|XP_001748550.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773069|gb|EDQ86714.1| predicted protein [Monosiga brevicollis MX1] Length = 471 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 21/188 (11%) Query: 27 TETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI 86 TE + R +L ++Q+ + A + L +L ++ I H G+ D+ Sbjct: 101 TEFVHFPMYRPKLEVLQIGTETTLAAVDCAAYTKAQLKELTRVLAQKEI--ILHSGQTDL 158 Query: 87 AVLFYTFGVRVRPVFCTKIA--------------SRLTRTYTNQHGLKDNLKELL-GINI 131 +L + VF T++A + N GL D + + + + Sbjct: 159 DLLTEVNEAPLERVFDTQLAYLINATLFIRNPQVAANLLGIRNTIGLADLVTHMFPEVKM 218 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---- 187 K Q SDW L+DEQL YA SDV HL +R + + L G L Sbjct: 219 DKGQALSDWRVRPLNDEQLLYAISDVEHLIEMRHRLQDALSARGVEAWFQEDMRTLLTPR 278 Query: 188 MDRAELDL 195 A+ DL Sbjct: 279 PTPADEDL 286 >gi|321465548|gb|EFX76549.1| hypothetical protein DAPPUDRAFT_55085 [Daphnia pulex] Length = 181 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 3/124 (2%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I VD E R C++Q+S + + P L + D KIF Sbjct: 61 VIGVDLEHHSDRSYRGITCLMQISTEKTDYIVDTLQLWDHLQP-LNEVFCDPTIVKIFQG 119 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L FG+ V +F T A+ L GL L+ +++ K Q DW Sbjct: 120 ADSDVIWLQRDFGIYVVNLFDTFQAASLLGFQKK--GLSFLLQHYCQVHVDKKYQLEDWR 177 Query: 142 ADDL 145 L Sbjct: 178 IRPL 181 >gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] Length = 682 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 13/192 (6%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 +P A + +D ET GL P +DR ++ LS T + A L + Sbjct: 140 LPPRLMA--APVLGLDLETTGLDPHQDRPRLLSLSTERDTYLVDLFALPHA-LEALRPLF 196 Query: 71 VD-EKREKIFHYGRFDIAVLFYTFGVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + H +FD+A L G+ R ++CT +A ++ + L D + Sbjct: 197 EAKTGPVLVGHNLKFDLAFLLKA-GLWPEGRRLWCTGLAHQVIHARSRMPALADLV---- 251 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + K Q+SDWS +S+ QL YAA D L L Q E+ +RLG + L Sbjct: 252 -PGLDKRLQTSDWSG-PISEAQLAYAARDTQVLLPLYHQQQEESRRLGIGKVLEIESRAL 309 Query: 188 MDRAELDLLGWE 199 A + L+G Sbjct: 310 PAVAWMGLMGVP 321 >gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246] Length = 1454 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 4/164 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +D ET GL RDR+ ++ L+ GT + A A + E + Sbjct: 915 VGLDLETTGLSHARDRVRLLSLATPSGTFLVDLFALPDPAAALAPLLEALTAVEVVGQNL 974 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--TNQHGLKDNLKELLGINISKAQQSSDW 140 FD+ L G V T +AS++ T H LKD LG+ + K Q++DW Sbjct: 975 GFDLPFLMR-LGFVPGRVRDTMLASQVLHAGNRTTGHSLKDLAHRHLGLELDKGLQTADW 1033 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 S L+D L YAA D AL + +L + A + Sbjct: 1034 SG-PLTDAHLGYAARDAELPLALWERLAPELAAAHLTGTAEAEM 1076 >gi|218439906|ref|YP_002378235.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] gi|218172634|gb|ACK71367.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] Length = 308 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 92/232 (39%), Gaps = 34/232 (14%) Query: 5 RVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVD---IIRIAA 58 DI A V + +DTE+ L ++ RL ++Q+ P D I + Sbjct: 4 FTQSEDIQALIDDLTEVKILWLDTESTDLNSKKSRLSLIQVLAYPEDTNGSRTYIFDVLD 63 Query: 59 GQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---T 114 + ++V+++ KIFH + D+ L G + + V CT S+ + Sbjct: 64 NPDIVDYFIEKIMVNDQINKIFHNAQHDLQFL---GGKKAKNVTCTLKLSKTIPYHILPV 120 Query: 115 NQHGLKDNLKELLG-INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK--- 170 H LK + L N+SK +Q+SDWS LS +QL YA D V+L + + E Sbjct: 121 PNHTLKTLTEYLTDFKNVSKEEQTSDWSQRPLSQKQLDYAKMDPVYLAHIHGRLLELNQQ 180 Query: 171 ---------LQRLGR--------SDLATSCCNFLMDRAELDLLGWENVDIFS 205 L +G+ L S + L RA+ + + F+ Sbjct: 181 SNPDPNQDNLTEIGKRYQEIKPEWQLLKSEIDNLETRAKNAMKAQNQTENFA 232 >gi|62088052|dbj|BAD92473.1| exosome component 10 isoform 2 variant [Homo sapiens] Length = 431 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 AVD E C++Q+S II + + L L D K+FH Sbjct: 309 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 367 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 DI L FG+ V +F T A+RL +H L LK ++ +K Q +DW Sbjct: 368 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 425 Query: 143 D 143 Sbjct: 426 R 426 >gi|118566802|gb|ABL01720.1| unknown [Salmonella enterica subsp. enterica serovar Typhi] Length = 151 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%) Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 P+ T+I + G ++E G+ + K++ +DW A LS+ Q +YAA+D Sbjct: 1 PEPLIDTQILAAFC-GRPLSWGFASMVEEYTGVALDKSESRTDWLARPLSERQCEYAAAD 59 Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 V +L + + + + G A C + R + Sbjct: 60 VWYLLPIAKKLMIETEAAGWLPAALDECRLMQQRRQ 95 >gi|321465391|gb|EFX76392.1| hypothetical protein DAPPUDRAFT_55156 [Daphnia pulex] Length = 181 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 3/124 (2%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I VD E R C++Q+S + + P L + D K KIF Sbjct: 61 VIGVDLEHHSERSYRGITCLMQISTDKTDYIVDTLQLWDHLQP-LNEVFCDPKIVKIFQG 119 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141 D+ L FG+ V +F T A+ L + L L+ ++++K Q DW Sbjct: 120 ADSDVIWLQRDFGIYVVNLFDTFQAATLLG--FEKKSLSFLLQHYCQVHVNKKYQLEDWR 177 Query: 142 ADDL 145 L Sbjct: 178 IRPL 181 >gi|149919604|ref|ZP_01908083.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1] gi|149819547|gb|EDM78975.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1] Length = 386 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 9/168 (5%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-------LVGML 70 R +A+D+E+ + R+R+C++QL+ + +A + L L Sbjct: 24 RDAAWVALDSESNSMFAYRERVCLLQLNVAGALFLVDTLALAGDSGEPRAEALAALAEPL 83 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 H G +D+A L FG+ + +F T+ A+ ++ G ++ + Sbjct: 84 ASPSLRLWIHGGEYDVACLKRDFGIALGGLFDTQQAASFLG--WSRTGYAAVVEAVCEQK 141 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + KA + DW + + L+YA DVVHL + + ++ + Sbjct: 142 LPKAHKQHDWGRRPIDAKALRYALDDVVHLPRVGRELEARIGAADLDE 189 >gi|326431455|gb|EGD77025.1| hypothetical protein PTSG_07367 [Salpingoeca sp. ATCC 50818] Length = 848 Score = 118 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 9/160 (5%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A + +AVD E + + C++Q+S I +A + + L L Sbjct: 278 ALKGEREVAVDLEAHNVRSYQGFTCLMQVSTRTRDFLIDTLAL-RGHLEVLNECLC---- 332 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 + H DI L G+ + +F A R+ ++ L LK L +++ K Sbjct: 333 --VLHGADSDILWLQRDHGLYIVCLFVCLFAMRVLGY--PKYSLAYLLKHLFHLSLDKRH 388 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q SDW L + YA +D +L +L G Sbjct: 389 QLSDWRIRPLPADMCVYAQADTHYLLDAHDALKAELLERG 428 >gi|282899917|ref|ZP_06307878.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] gi|281195187|gb|EFA70123.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] Length = 317 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 13/163 (7%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP------GDGTVDIIRIAAGQKNAPNLVGML 70 ++ +DTE RL ++Q+ G+ + + + ++ Sbjct: 17 LAKCKSLWLDTEIADWNTPCPRLSLIQVLANPTDLIGEFAYIFDVLDKPDISTYFISQIM 76 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTR--TYTNQHGLKDNLKELL 127 VD + +K+FH FD+ L + V CT K+A ++ T LK EL Sbjct: 77 VDVQIQKVFHNADFDLKYLGKN---SAKNVTCTFKVAKKIGHRILQTTNLKLKTLAVELC 133 Query: 128 GI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 ++ K +SDW L ++QL+YAA D V+L A+ + E Sbjct: 134 HFSDVDKEGGASDWGKRPLCEKQLKYAAMDTVYLAAVHRRLME 176 >gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia] Length = 733 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 9/161 (5%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP---NLVGMLVDEKREK 77 I VD E + ++ IVQ+ + I I G N + D+K K Sbjct: 58 SIIGVDIEHTNDIGFDGQISIVQIKDDEDVYIIDVIEIGVDNQKLINVFKQIFEDDKIIK 117 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135 +F+ G D+ L F + ++ F K + + ++ L K+ +SK+ Sbjct: 118 VFYAGSTDVLWLKRDFQITIQNFFDIKEVADECK--LSKISLIFLWKQYCDHQVSKSYKT 175 Query: 136 --QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 Q+SDW+ L+ EQL YAA D +L LR E+L + Sbjct: 176 NMQTSDWAERPLTQEQLIYAAYDCYYLPYLRYVLLEELSKA 216 >gi|126641731|ref|YP_001084715.1| ribonuclease D [Acinetobacter baumannii ATCC 17978] Length = 318 Score = 115 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 4/130 (3%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHG 118 + + + ++ IFH DI ++++ + VF T++ + Q Sbjct: 3 LDLSEFWKKIFLAQQ--NIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVS 59 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + LK L I+I K Q SDW A LS +QL YAA+DV++L L ++L++ G + Sbjct: 60 YQGALKLCLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYE 119 Query: 179 LATSCCNFLM 188 C+ L Sbjct: 120 YVLEDCSSLT 129 >gi|255550866|ref|XP_002516481.1| 3'-5' exonuclease, putative [Ricinus communis] gi|223544301|gb|EEF45822.1| 3'-5' exonuclease, putative [Ricinus communis] Length = 342 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 21/197 (10%) Query: 4 IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + +PAE D I D E + L LCI+Q++ D + G+ Sbjct: 37 VVTDASQLPAEFLNPTPDKQLIIGFDCEGVDLCRH-GTLCIMQIAFPDAIFLVDATQGGE 95 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---- 116 L K+ H + D L++ FG+++ VF T+IA L + Sbjct: 96 MLLKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVFDTQIAYSLIEEQEGRTKLP 155 Query: 117 ---HGLKDNLK--ELLGIN-ISKAQ------QSSD-WSADDLSDEQLQYAASDVVHLHAL 163 L GI+ + K + Q S+ W+ LS+ ++ AA DV L + Sbjct: 156 DDYISFVGLLADPRYCGISYLEKEEVRLLLRQDSNFWTYRPLSELMIRAAADDVRFLLYI 215 Query: 164 RLQFTEKLQRLGRSDLA 180 + +KL + LA Sbjct: 216 YHKMIKKLNQRSLWYLA 232 >gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] Length = 662 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 82/244 (33%), Gaps = 48/244 (19%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I+ E + A + +D ET GL P + ++Q++ + V +I + Sbjct: 50 IKDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLIQIAAPNRPVILIEF-RSITHK 108 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV--RPVFCTKIASRLT----------- 110 +L + K K+ H F+I L G+ T + ++L Sbjct: 109 ESLRRFIEHHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDD 168 Query: 111 --------------------------RTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 R + L LG ++ K+ Q SDW Sbjct: 169 IKAGVLPIPNLNQSIKNKKKLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGK-P 227 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE-------LDLLG 197 L+ EQLQYAA+D + LR F K+ +D L A+ LDL Sbjct: 228 LTQEQLQYAANDAAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMGLMGMGLDLDR 287 Query: 198 WENV 201 W + Sbjct: 288 WGEL 291 >gi|219118334|ref|XP_002179944.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408997|gb|EEC48930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 700 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 61/162 (37%), Gaps = 11/162 (6%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79 A+A D E+ C++QLS G +I A L + D K+ Sbjct: 257 ALAFDVESYNKSKYTQLTCLLQLSTDHGMAYVIDPLAPGVFEEVGGLAPIFADPDIVKVG 316 Query: 80 HY-GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL------LGINIS 132 H G D+ L FG+ V F T A+++ HGL + L ++ Sbjct: 317 HSIGGLDVRSLHRDFGIFVINAFDTYEAAKVLC--LESHGLAAVCEHYGMKYTDLYKSLK 374 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 Q+ DW A L+ +QY DV L LR+ L + Sbjct: 375 NEYQTCDWRARPLTGPMIQYGRFDVHFLIELRMLMIRDLTKT 416 >gi|222618694|gb|EEE54826.1| hypothetical protein OsJ_02264 [Oryza sativa Japonica Group] Length = 504 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 78/207 (37%), Gaps = 27/207 (13%) Query: 4 IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + G +P E A I D E + L LCI+Q++ D + I G+ Sbjct: 200 VVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDLCRHGA-LCIMQIAFPDAVYLVDAIEGGK 258 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113 + L E K+ H + D L++ FG+++ V T+IA L R Y Sbjct: 259 ELIEACKPALESEYVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLLEEQEGKKRGY 318 Query: 114 TNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHAL 163 L G+ K + + D W+ LS+ ++ A DV L ++ Sbjct: 319 DEYISFVSLLADPRYCGMAYPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSI 378 Query: 164 RLQFTEKLQRLG------RSDLATSCC 184 + EKL ++ RS+L C Sbjct: 379 HEKMMEKLSKVSLWRLSVRSELYCRCF 405 >gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1] gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax] Length = 1860 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 5/178 (2%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81 +D ET GL +++ ++Q++ D V I + K L +L +EK KI Sbjct: 1312 GLDIETTGLEVFDEKIRLIQIAVEDYPVIIYDMFNITKESILTGLREVLKNEKVVKIIQN 1371 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSD 139 G+FD L + V +F T IAS+L N +G K + +++ L + + K QQ+S Sbjct: 1372 GKFDAKFLMHN-KFEVANIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQQNSV 1430 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 W+ L++ QL YAA D L L + ++ R + ++ +++L G Sbjct: 1431 WNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICRENMGTVNDIENKCILPICDMELNG 1488 >gi|327394110|dbj|BAK11532.1| ribonuclease D Rnd [Pantoea ananatis AJ13355] Length = 274 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 + T+I + + G + + + K++ +DW A L++ Q QYAA+DV + Sbjct: 1 MIDTQILAAFS-GQPLSWGFASMVAHFTQVELDKSEARTDWLARPLTERQCQYAAADVHY 59 Query: 160 LHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200 L + Q ++++++G A S C L R LD L E+ Sbjct: 60 LLPIAHQLMQQVEQVGNMAAALSECENLCQR-RLDSLAPED 99 >gi|297825683|ref|XP_002880724.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp. lyrata] gi|297326563|gb|EFH56983.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp. lyrata] Length = 342 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 79/221 (35%), Gaps = 24/221 (10%) Query: 4 IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 I +PA+ + I D E + L +LCI+Q++ + + I G+ Sbjct: 36 IVTDPLQLPADFLNPSPEKKLVIGFDCEGVDLCRH-GKLCIMQIAFSNAIYLVDVIEGGE 94 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113 L K+ H + D L++ FG+R+ V T+IA L R Sbjct: 95 VLMKACKPALESTYITKVIHDCKRDSEALYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPL 154 Query: 114 TNQHGLKDNLK--ELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHAL 163 + L GI+ + ++ D W+ +++ ++ AA DV L L Sbjct: 155 DDYISFVSLLADPRYCGISYEEKEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYL 214 Query: 164 RLQFTEKLQRLGRSDLA---TSCCNFLMDRAELDLLGWENV 201 + KL + LA C L + D W V Sbjct: 215 YHKMMGKLNQRSLWHLAVRGALYCRCLCCMNDADFADWPTV 255 >gi|147856691|emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera] Length = 951 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 34/164 (20%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 ++ + + V AVDTE L ++Q+S + + IA L + Sbjct: 124 ELADVLSKQRV--FAVDTEQHSLRSFLGFTALIQISTQNEDYLVDTIAL-HDTLDVLQPV 180 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + K+FH D+ L F + V +F T Sbjct: 181 FANPSICKVFHGADNDVLWLQRDFHIXVVNLFDT-------------------------- 214 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + DW LS E L+YA +D +L + +L++ Sbjct: 215 -----AKREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQ 253 >gi|225429426|ref|XP_002276186.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147856945|emb|CAN82846.1| hypothetical protein VITISV_007988 [Vitis vinifera] gi|296081603|emb|CBI20608.3| unnamed protein product [Vitis vinifera] Length = 341 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 72/197 (36%), Gaps = 21/197 (10%) Query: 4 IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 I +P E + I D E + L LCI+Q++ D + I G+ Sbjct: 36 IVTLPSQLPIEFLEPSPERKLVIGFDCEGVDLCRH-GTLCIMQIAFPDAIYLVDAIQGGE 94 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---- 116 L K+ H + D L++ FG+++ V T+IA L + Sbjct: 95 MLMKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRLV 154 Query: 117 ---HGLKDNLK--ELLGIN-ISKAQ------QSSD-WSADDLSDEQLQYAASDVVHLHAL 163 L G++ + K + Q+ D W+ LSD ++ AA DV L + Sbjct: 155 DDYISFVGLLADPRYCGVSYLEKQEVRDLLRQNPDFWTHRPLSDLMVRAAADDVRFLLYI 214 Query: 164 RLQFTEKLQRLGRSDLA 180 + EKL LA Sbjct: 215 YHKMMEKLNERSLWYLA 231 >gi|90408161|ref|ZP_01216329.1| ribonuclease D [Psychromonas sp. CNPT3] gi|90310691|gb|EAS38808.1| ribonuclease D [Psychromonas sp. CNPT3] Length = 296 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 1/106 (0%) Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 D+ ++ G +F T++A G ++ L G+ + K + +DW Sbjct: 2 SEDLEIIRDHKGDLNIRLFDTQVACAFLN-LGASLGYAKMVETLQGVIVDKGESRTDWCK 60 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 L+++Q+ YAA DV+HL + +L C ++ Sbjct: 61 RPLTEKQVDYAAIDVLHLKPCLEKLKAQLAEKNMLTFFEQECQNIL 106 >gi|79323071|ref|NP_001031418.1| 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein [Arabidopsis thaliana] gi|330252678|gb|AEC07772.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis thaliana] Length = 342 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 79/221 (35%), Gaps = 24/221 (10%) Query: 4 IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 I +PA+ + I D E + L +LCI+Q++ + + I G+ Sbjct: 36 IVTDPFQLPADFLNPSPEKKLVIGFDCEGVDLCRH-GKLCIMQIAFSNAIYLVDVIEGGE 94 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113 L K+ H + D L++ FG+R+ V T+IA L R Sbjct: 95 VIMKACKPALESNYITKVIHDCKRDSEALYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPL 154 Query: 114 TNQHGLKDNLK--ELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHAL 163 + L GI+ + ++ D W+ +++ ++ AA DV L L Sbjct: 155 DDYISFVSLLADPRYCGISYEEKEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYL 214 Query: 164 RLQFTEKLQRLGRSDLA---TSCCNFLMDRAELDLLGWENV 201 + KL + LA C L + D W V Sbjct: 215 YHKMMGKLNQRSLWHLAVRGALYCRCLCCMNDADFADWPTV 255 >gi|18400976|ref|NP_565612.1| 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein [Arabidopsis thaliana] gi|13605561|gb|AAK32774.1|AF361606_1 At2g25910/F17H15.6 [Arabidopsis thaliana] gi|18491139|gb|AAL69538.1| At2g25910/F17H15.6 [Arabidopsis thaliana] gi|20197359|gb|AAC42241.2| expressed protein [Arabidopsis thaliana] gi|21554875|gb|AAM63716.1| unknown [Arabidopsis thaliana] gi|330252677|gb|AEC07771.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis thaliana] Length = 341 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 79/221 (35%), Gaps = 24/221 (10%) Query: 4 IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 I +PA+ + I D E + L +LCI+Q++ + + I G+ Sbjct: 36 IVTDPFQLPADFLNPSPEKKLVIGFDCEGVDLCRH-GKLCIMQIAFSNAIYLVDVIEGGE 94 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113 L K+ H + D L++ FG+R+ V T+IA L R Sbjct: 95 VIMKACKPALESNYITKVIHDCKRDSEALYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPL 154 Query: 114 TNQHGLKDNLK--ELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHAL 163 + L GI+ + ++ D W+ +++ ++ AA DV L L Sbjct: 155 DDYISFVSLLADPRYCGISYEEKEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYL 214 Query: 164 RLQFTEKLQRLGRSDLA---TSCCNFLMDRAELDLLGWENV 201 + KL + LA C L + D W V Sbjct: 215 YHKMMGKLNQRSLWHLAVRGALYCRCLCCMNDADFADWPTV 255 >gi|297597041|ref|NP_001043365.2| Os01g0566900 [Oryza sativa Japonica Group] gi|52076246|dbj|BAD45014.1| egalitarian-like [Oryza sativa Japonica Group] gi|125526475|gb|EAY74589.1| hypothetical protein OsI_02478 [Oryza sativa Indica Group] gi|215712371|dbj|BAG94498.1| unnamed protein product [Oryza sativa Japonica Group] gi|255673376|dbj|BAF05279.2| Os01g0566900 [Oryza sativa Japonica Group] Length = 307 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 78/207 (37%), Gaps = 27/207 (13%) Query: 4 IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + G +P E A I D E + L LCI+Q++ D + I G+ Sbjct: 3 VVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDLCRHGA-LCIMQIAFPDAVYLVDAIEGGK 61 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113 + L E K+ H + D L++ FG+++ V T+IA L R Y Sbjct: 62 ELIEACKPALESEYVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLLEEQEGKKRGY 121 Query: 114 TNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHAL 163 L G+ K + + D W+ LS+ ++ A DV L ++ Sbjct: 122 DEYISFVSLLADPRYCGMAYPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSI 181 Query: 164 RLQFTEKLQRLG------RSDLATSCC 184 + EKL ++ RS+L C Sbjct: 182 HEKMMEKLSKVSLWRLSVRSELYCRCF 208 >gi|325972527|ref|YP_004248718.1| 3'-5' exonuclease [Spirochaeta sp. Buddy] gi|324027765|gb|ADY14524.1| 3'-5' exonuclease [Spirochaeta sp. Buddy] Length = 294 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 78/197 (39%), Gaps = 20/197 (10%) Query: 1 MTTIRVHEGD-----IPAECAARYVDAIAVD--TETLGLMPRRDRLCIVQLSPGDGTVDI 53 M T + + D + ++ + + +A+D E L + LC++QL G + Sbjct: 1 MHTYTLIDSDAKLNLLQSQWKEQGITTVAMDFEGEFN-LHIYGEHLCLIQLFDGSAYALV 59 Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 + L L D K+ D A++ + + + V+ +IA+ Sbjct: 60 DPF---TLSKEALKAFLEDASLLKVMFDCASDSALVRKQYDILLDGVYDIRIAALALGYI 116 Query: 114 TNQHGLKDNLKELL------GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 N GL ++ + ++ K Q ++W L +Q++YA SDV HL L+ Sbjct: 117 GNLTGL---VERYIPEAEKPNLSSKKKNQMTNWLIRPLKSDQIEYALSDVEHLLVLKDIL 173 Query: 168 TEKLQRLGRSDLATSCC 184 ++++ G ++ Sbjct: 174 DGEVEKKGLTEKVALEM 190 >gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H] gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H] Length = 1861 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 5/178 (2%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81 +D ET GL +++ ++Q++ + V I + K L +L +EK KI Sbjct: 1313 GLDIETTGLEVFDEKIRLIQIAVENYPVIIYDMFNITKESILTGLREILKNEKVVKIIQN 1372 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSD 139 G+FD L + +V +F T IAS+L N +G K + +++ L + + K QQ+S Sbjct: 1373 GKFDAKFLMHN-NFQVDNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQQNSV 1431 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 W+ L++ QL YAA D L L + ++ + + ++ +++L G Sbjct: 1432 WNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICKENMETVNDIENKCILPICDMELNG 1489 >gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] Length = 585 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 12/151 (7%) Query: 25 VDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +DTET + + + Q+ G + +I ++ + ++ + H + Sbjct: 27 IDTETT------PKDIRLFQVGLESGPIYVIDFLFVKRAPELIKDIIAKKGVA--GHNLK 78 Query: 84 FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143 +D+ L + F T + ++L N+ L G +I K +Q S+WS+ Sbjct: 79 YDLKYLMKY-DIHPYTTFDTMVGAQLIG--LNRVSLASVYNHFTGESIDKKEQFSNWSSK 135 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +L++ Q+ YAA DV L L + +L + Sbjct: 136 ELTESQIFYAAKDVEVLRLLYEKLKNELNKE 166 >gi|82621130|gb|ABB86253.1| 3'-5' exonuclease domain-containing protein-like [Solanum tuberosum] Length = 338 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 21/197 (10%) Query: 4 IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + + ++P E A I D E + L LCI+QL+ D + + G+ Sbjct: 34 VVTNPSELPVEFLEPSAETQLVIGFDCEGVDLCRH-GTLCIMQLAFPDAIYLVDAVQGGE 92 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL-------TRTY 113 L K+ H + D L++ FG+++ V T+IA L R Sbjct: 93 AVVQACKPALESNYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLINEQEGHARVP 152 Query: 114 TNQHGLKDNLK--ELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHAL 163 L G++ + ++ D W+ LS++ ++ AA DV L + Sbjct: 153 DCHISFVGLLADPRYCGVSYDEKEEVRVLLRQDPKYWTYRPLSEQMIRAAADDVRFLLHI 212 Query: 164 RLQFTEKLQRLGRSDLA 180 + +KL +LA Sbjct: 213 YHKMVQKLNDKSLWNLA 229 >gi|226954026|ref|ZP_03824490.1| ribonuclease D, processes tRNA [Acinetobacter sp. ATCC 27244] gi|226835237|gb|EEH67620.1| ribonuclease D, processes tRNA [Acinetobacter sp. ATCC 27244] Length = 286 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 +F T++A Q ++ LK L I I K Q SDW A L+ +Q+ YAA+DV Sbjct: 2 HNIFDTQVAMAFLGNGL-QVSYQNALKTYLDIEIEKDQTRSDWLARPLTPQQISYAANDV 60 Query: 158 VHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 ++L L LQ G C L +D Sbjct: 61 LYLPRLAEALKRDLQSKGIYHYVLEDCQNLTKEIGID 97 >gi|303286107|ref|XP_003062343.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455860|gb|EEH53162.1| predicted protein [Micromonas pusilla CCMP1545] Length = 149 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ + V AVD E R C++Q+S + + +A K +L Sbjct: 9 ADLASHLD--GVAEFAVDLEHHSYRSFRGFTCVIQVSTRERDFVVDALALRSKMRAHLAR 66 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG------LKDN 122 D ++K+ H D+ L FG+ V +F T A+R+ + G Sbjct: 67 HFEDATKQKVMHGADMDVQWLQRDFGIYVVNMFDTGQAARVLELPSKGLGAFYLTDAAYA 126 Query: 123 LKELLGINISKAQQSSDWSADDL 145 LK ++ K Q +DW L Sbjct: 127 LKHFCDVDADKRYQLADWRRRPL 149 >gi|224088954|ref|XP_002308585.1| predicted protein [Populus trichocarpa] gi|222854561|gb|EEE92108.1| predicted protein [Populus trichocarpa] Length = 378 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 21/197 (10%) Query: 4 IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + +P E A I D E + L LCI+QL+ D + I G+ Sbjct: 33 VVTEPSQLPVEFLNPSAAKQLIIGFDCEGVNLCRHGA-LCIMQLAFPDAIYLVDAINGGE 91 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113 L K+ H + D L++ FG+++ V T+IA L R Sbjct: 92 SLIKVCKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRTRLP 151 Query: 114 TNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHAL 163 + L G++ + K + D W+ LS+ ++ AA DV L + Sbjct: 152 GDYISFVGLLADPRYCGVSYLEKEEVRVLLRQDPMFWTYRPLSEMMIRAAADDVRFLLCI 211 Query: 164 RLQFTEKLQRLGRSDLA 180 + EKL LA Sbjct: 212 YYKMMEKLNERSLWYLA 228 >gi|227504960|ref|ZP_03935009.1| ribonuclease D [Corynebacterium striatum ATCC 6940] gi|227198469|gb|EEI78517.1| ribonuclease D [Corynebacterium striatum ATCC 6940] Length = 414 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 6/179 (3%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGML 70 +R A+DTE DR ++Q+ G GT + + L ++ Sbjct: 25 ATAALSRGTGPFAIDTERASSYRFDDRAFLIQIRRAGAGTFLFAPEGKRSELSAALAPVI 84 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D+ + H D+ L G+ +F T++A+R+ G + EL + Sbjct: 85 NDQD--WVVHAAPSDLPSL-AWLGLYPGTLFDTELAARMADFAHPNLG--AMILELFDVE 139 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + K SDWSA LS YAA DV L L + L + A ++D Sbjct: 140 LEKGYGDSDWSAPKLSPNLRAYAALDVELLLELAEALRDILAEEDKLGWAYEEFAAMVD 198 >gi|37523316|ref|NP_926693.1| ribonuclease D [Gloeobacter violaceus PCC 7421] gi|35214320|dbj|BAC91688.1| glr3747 [Gloeobacter violaceus PCC 7421] Length = 195 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 9/165 (5%) Query: 18 RYVDAIAVDTETLGLM---PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 + +AVDTET ++R+ ++Q+ G + + + + + Sbjct: 25 QTRKVLAVDTETAHWHQVSTGKNRVSLLQVWDGTSEAVSVIDCFAVDLTAFVEKTMRNWE 84 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----RTYTNQHGLKDNLKELLGIN 130 K+ H +D+A L + R V CT +R R ++ LK LGI Sbjct: 85 IVKLIHNAPYDLAYLG--GAAQARSVVCTLQMARSIPTSRRGALERNSLKALSAHFLGIE 142 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + K Q+S+W+ L+ EQL YAA D + ++ Sbjct: 143 LDKRYQASNWALRPLTAEQLDYAALDPWVTFHIWEHMRALVEPEN 187 >gi|145630436|ref|ZP_01786217.1| ribonuclease D [Haemophilus influenzae R3021] gi|144984171|gb|EDJ91608.1| ribonuclease D [Haemophilus influenzae R3021] Length = 273 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 + T+I +R GL ++ L I I K ++W LSD QLQYAA DV + Sbjct: 1 MIDTQIMARFI-GLGASAGLAKLAQQYLNIEIDKGATRTNWIKRPLSDIQLQYAAGDVWY 59 Query: 160 LHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190 L L ++L + C ++ + Sbjct: 60 LLPLYHILEKELAKTPWEQAVRDDCELVLAK 90 >gi|224142834|ref|XP_002324746.1| predicted protein [Populus trichocarpa] gi|222866180|gb|EEF03311.1| predicted protein [Populus trichocarpa] Length = 331 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 21/197 (10%) Query: 4 IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + +PAE A I D E + L LCI+QL+ D + I G+ Sbjct: 26 VVTEPSQLPAEFLNPSAAKQLIIGFDCEGVDLCRH-GTLCIMQLAFPDAIYLVDAIKGGE 84 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA-SRL------TRTY 113 L K+ H + D L++ FG+++ V T+IA S++ TR Sbjct: 85 SLIRACKPALESSHITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSQIEEQEGRTRLP 144 Query: 114 TNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHAL 163 + L GI+ + K + D W+ LS+ + AA DV L + Sbjct: 145 DDYISFVGLLADPRYCGISYLEKEEVRVLLRQDPMFWTYRPLSEMMIHAAADDVRFLLRI 204 Query: 164 RLQFTEKLQRLGRSDLA 180 + EKL + LA Sbjct: 205 YYKMMEKLNQRSLWYLA 221 >gi|302337887|ref|YP_003803093.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293] gi|301635072|gb|ADK80499.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293] Length = 284 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 15/187 (8%) Query: 4 IRVHEGDIP-----AECAARYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 IR + D + AR V IAVD E L + LC+VQ+ G+ + + Sbjct: 5 IRFLDNDQATAAWLDDIKARGVREIAVDIEGEFN-LHRYGEHLCLVQVWDGEVLAIVDPL 63 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + + + KI + D +L+ +G+ V A L Sbjct: 64 VV---DLALVREIFESGSFRKIVYDCSSDRTLLYRRYGIHFNEVCDLMPAVVLLDFQKK- 119 Query: 117 HGLKDNLKELLGIN--ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 GL L +L I K Q DW + + + L+YAA+DV+HL L+ + ++L+ Sbjct: 120 -GLASVLSSVLHIEEKPKKKFQQYDWMSRPIDADALEYAAADVLHLFTLKEELFKRLEEE 178 Query: 175 GRSDLAT 181 G SD Sbjct: 179 GLSDEYE 185 >gi|145536632|ref|XP_001454038.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124421782|emb|CAK86641.1| unnamed protein product [Paramecium tetraurelia] Length = 529 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 16/157 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 A +D E +R+C++Q+S G IA + + ++ KIF+ Sbjct: 16 AFGIDIEFSN-----NRICLIQISDGKEIYLFDPIALNLEQ--YMREFFKNDAI-KIFYS 67 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS----KAQQS 137 G D+ L + + V K+ ++ L K+ G+ K Q Sbjct: 68 GAQDLKWLKNEYQIVVNNYCDLKVLAQ----KEPDLSLIALWKKYCGVQFEREDKKRLQK 123 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 SDW A L++EQL YAA D +L LR ++ Sbjct: 124 SDWFARPLTEEQLFYAALDCKYLVVLREILLQQYTEE 160 >gi|297743128|emb|CBI35995.3| unnamed protein product [Vitis vinifera] Length = 367 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 23/198 (11%) Query: 4 IRVHEGDIPAECAA----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I H +P + R + I D E + L LCI+QL+ D + I G Sbjct: 66 IVTHASQLPKDFLVPSPVRQL-VIGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGG 123 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RT 112 +K L K+ H + D L++ FG+++ V ++IA L R+ Sbjct: 124 EKLMKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRS 183 Query: 113 YTNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHA 162 + L GI+ + K + D W+ LS+ ++ AA DV L Sbjct: 184 PDDYISFVGLLADPRYCGISYLEKKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPY 243 Query: 163 LRLQFTEKLQRLGRSDLA 180 + + E+L LA Sbjct: 244 IYYKMMEELNEHSLWKLA 261 >gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7] gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7] Length = 2016 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 5/143 (3%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKR 75 + + +D ET GL + + ++Q++ + V I + L +L ++ Sbjct: 1462 KDIKYCGLDIETTGLEVFDENIRLIQIAVENYPVIIYDMFNINKKDILDGLRKVLENKNI 1521 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISK 133 KI G+FD L + ++ +F T IAS+L N +G K + +++ L + + K Sbjct: 1522 IKIIQNGKFDAKFLLHN-NFKIENIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVILDK 1580 Query: 134 AQQSSDWSADDLSDEQLQYAASD 156 QQ+S W+ L++ QL YAA D Sbjct: 1581 QQQNSVWNNSLLNNNQLFYAARD 1603 >gi|145544186|ref|XP_001457778.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425596|emb|CAK90381.1| unnamed protein product [Paramecium tetraurelia] Length = 389 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 16/162 (9%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 +A +D E R+C++Q+S G IA + + ++ KI Sbjct: 13 QGEAFGIDIEFSNK-----RICLIQISDGKEIYLFDPIALNLEQ--YMRDFFQNDAI-KI 64 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS----KA 134 F+ G D+ L + + V K+ L + +Q L K+ G+ K Sbjct: 65 FYSGAQDLKWLKTEYQIEVNNYCDLKV---LAQKEPDQ-SLIALWKKYCGVQFERDDKKR 120 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 Q SDW A LS EQL YAA D HL LR ++ + Sbjct: 121 LQRSDWFARPLSQEQLFYAALDCKHLIMLRDILLQQYTEEEK 162 >gi|326496741|dbj|BAJ98397.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326514394|dbj|BAJ96184.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 332 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 27/207 (13%) Query: 4 IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + G +P E A I D E + L R LCI+Q++ D + I G+ Sbjct: 28 VVTKPGQLPVEFLEPSAAKKLVIGFDCEGVDL-CRNGALCIMQIAFPDAVYLVDAIEGGK 86 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113 + L + K+ H + D L++ FG+++ V T+IA L R Y Sbjct: 87 ELVEACKPALESDHVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIEEQEGKKRAY 146 Query: 114 TNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHAL 163 L G+ K + + D W LS+ ++ A DV L + Sbjct: 147 DVYISFVSLLADPRYCGMPYPEKEEVRTLLRQDPNFWKNRPLSEMMIRAATDDVRFLLNI 206 Query: 164 RLQFTEKLQRLG------RSDLATSCC 184 + EKL ++ RS+L C Sbjct: 207 HEKMMEKLSKVSSWRLAVRSELYCRCF 233 >gi|225442373|ref|XP_002281479.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 336 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 23/198 (11%) Query: 4 IRVHEGDIPAECAA----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I H +P + R + I D E + L LCI+QL+ D + I G Sbjct: 35 IVTHASQLPKDFLVPSPVRQL-VIGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGG 92 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RT 112 +K L K+ H + D L++ FG+++ V ++IA L R+ Sbjct: 93 EKLMKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRS 152 Query: 113 YTNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHA 162 + L GI+ + K + D W+ LS+ ++ AA DV L Sbjct: 153 PDDYISFVGLLADPRYCGISYLEKKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPY 212 Query: 163 LRLQFTEKLQRLGRSDLA 180 + + E+L LA Sbjct: 213 IYYKMMEELNEHSLWKLA 230 >gi|242057747|ref|XP_002458019.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor] gi|241929994|gb|EES03139.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor] Length = 340 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 76/201 (37%), Gaps = 25/201 (12%) Query: 4 IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 I G +P E A I D E + L R LCI+QL+ D + I G+ Sbjct: 32 IVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDL-CRNGALCIMQLAFPDAVYLVDAIEGGK 90 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT------ 114 + L + K+ H + D L++ FG+++ V T+IA L + Sbjct: 91 ELIQACKPALESDHITKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIQEQEQEGKKK 150 Query: 115 -----NQHGLKDNL--KELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVH 159 N L K GI K + + D W+ LSD ++ A DV Sbjct: 151 TSDDYNYISFVSLLADKRFCGIPYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRF 210 Query: 160 LHALRLQFTEKLQRLGRSDLA 180 L + + EKL ++ LA Sbjct: 211 LLNIYEKMMEKLSKVSLWRLA 231 >gi|302824807|ref|XP_002994043.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii] gi|300138097|gb|EFJ04877.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii] Length = 328 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 19/181 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A + AI +D E + L RLCI+QL+ D + + G L Sbjct: 37 AAHALAIGLDCEGVDLARH-GRLCIMQLAFQDAIYLVDAVQGGDALMQACKAALESPHVT 95 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKE---L 126 K+ H + D L++ G+++ VF T+IA L + D L + Sbjct: 96 KVVHDCKRDSEALYFQHGIKLNNVFDTQIAHSLIELQQGRQWIPDDCISFVDLLADAKYC 155 Query: 127 LGINIS-KAQQSS----D---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +G+ K + S D W+ L++ + AA DV L + ++L + Sbjct: 156 VGVAYDEKDEVRSLLRKDPEFWTHRPLTNMMKRAAADDVRFLLRIHRNMVQRLDAFSAWE 215 Query: 179 L 179 L Sbjct: 216 L 216 >gi|255637101|gb|ACU18882.1| unknown [Glycine max] Length = 278 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 18/176 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I D E + L R+ LC++QL+ D + I G++ L K+ H Sbjct: 60 VIGFDCEGVDL-CRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHD 118 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTYTNQHGLKDNLK--ELLGINIS 132 + D L++ FG+++ V T+IA L R + L G + Sbjct: 119 CKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGKSYD 178 Query: 133 KAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++ D W LS++ ++ AA DV L + Q EKL LA Sbjct: 179 EKEEVRVLLRQDPKFWRHRPLSEQMVRAAADDVRFLLYIYHQMMEKLNERSLWYLA 234 >gi|226533369|ref|NP_001143931.1| hypothetical protein LOC100276743 [Zea mays] gi|194696098|gb|ACF82133.1| unknown [Zea mays] gi|195629726|gb|ACG36504.1| hypothetical protein [Zea mays] Length = 344 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 25/201 (12%) Query: 4 IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 I G +P E A I D E + L R LCI+QL+ D + I G+ Sbjct: 36 IVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDL-CRNGALCIMQLAFPDAVYLVDAIEGGK 94 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT------ 114 + L + K+ H + D L++ FG+++ V T+IA L + Sbjct: 95 ELIQACKPALESDHITKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIQEQEQKGKKK 154 Query: 115 -----NQHGLKDNL--KELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVH 159 N L K GI + ++ D W+ LSD ++ A DV Sbjct: 155 TSDDYNYISFVSLLADKRYCGIPYPEKEEVRILLRQDPNFWTIRPLSDMMVRAATDDVRF 214 Query: 160 LHALRLQFTEKLQRLGRSDLA 180 L + + EKL ++ LA Sbjct: 215 LLNIYEKMMEKLNKVSLWRLA 235 >gi|255647529|gb|ACU24228.1| unknown [Glycine max] Length = 345 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 18/176 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I D E + L R+ LC++QL+ D + I G++ L K+ H Sbjct: 61 VIGFDCEGVDL-CRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHD 119 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTYTNQHGLKDNLK--ELLGINIS 132 + D L++ FG+++ T+IA L R + L GI+ Sbjct: 120 CKRDSEALYFQFGIKLNNAVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGISYD 179 Query: 133 KAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + ++ D W+ LS++ ++ AA DV L + Q EKL LA Sbjct: 180 EKEEVRVLLRQDPKFWTHRPLSEQMIRAAADDVRFLLYIYRQMMEKLNERSLWYLA 235 >gi|302789405|ref|XP_002976471.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii] gi|300156101|gb|EFJ22731.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii] Length = 328 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 19/181 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A + AI +D E + L RLCI+QL+ D + + G L Sbjct: 37 AAHALAIGLDCEGVDLARH-GRLCIMQLAFQDAIYLVDAVQGGDALMQACKPALESPHVT 95 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKE---L 126 K+ H + D L++ G+++ VF T+IA L + D L + Sbjct: 96 KVVHDCKRDSEALYFQHGIKLNNVFDTQIAHSLIELQQGRQWIPDDCISFVDLLADAKYC 155 Query: 127 LGINIS-KAQQSS----D---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +G+ K + S D W+ L++ + AA DV L + ++L + Sbjct: 156 VGVAYDEKDEVRSLLRKDPEFWTHRPLTNMMKRAAADDVRFLLRIHRNMVQRLDAFSAWE 215 Query: 179 L 179 L Sbjct: 216 L 216 >gi|241670620|ref|XP_002399861.1| conserved hypothetical protein [Ixodes scapularis] gi|215506210|gb|EEC15704.1| conserved hypothetical protein [Ixodes scapularis] Length = 853 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 20/183 (10%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--AAGQKNAPNLVG 68 + A +A+D E + L PR L ++QL+ G V + + + L Sbjct: 539 LYARAMLSQCPVLALDAEGVNLGPRGP-LTLLQLATAAGEVFLFDVQSTPQLFDEGKLKD 597 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLK 120 +L + K+ H R D A LFY FG+R++ VF T+ A + L Sbjct: 598 ILESQTIVKVVHDCRNDSAALFYQFGIRLQNVFDTQAAHATLQQQDQGKPVHKVKNVSLG 657 Query: 121 DNLKELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHA-LRLQFTEKL 171 G + +Q D WS LS++ + +AA DV L + + Sbjct: 658 TLCGLYGGPPNPRREQVKSLYRRDQKFWSRRPLSEDMVFHAAFDVFCLLPAVHDALRGAI 717 Query: 172 QRL 174 + Sbjct: 718 KPE 720 >gi|298245785|ref|ZP_06969591.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963] gi|297553266|gb|EFH87131.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963] Length = 402 Score = 105 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 12/165 (7%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRR--------DRLCIVQLSPGDGTVDIIRIAAGQKN 62 + A + +A+D E + RL ++QL+ + + K+ Sbjct: 46 LHAVELLKQSPVVAIDAEFTQVRSLSAESNGSTVPRLALLQLAIEKQCFVVDTLR--LKD 103 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L ++ D + H D+ V+ GV V + + SR L Sbjct: 104 LSPLNTVVSDPDVIVLLHGAGADLRVMAER-GVFVAHYYDLEATSRSVFGQHES-SLAAM 161 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L + + K+ Q +DW+ L + YAA D AL Sbjct: 162 LWRAFHMRLDKSLQRTDWTRRPLPPAMVAYAARDAEATLALYSWL 206 >gi|226491678|ref|NP_001141141.1| hypothetical protein LOC100273227 [Zea mays] gi|194702850|gb|ACF85509.1| unknown [Zea mays] Length = 339 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 76/201 (37%), Gaps = 25/201 (12%) Query: 4 IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 I G +P E A I D E + L R LCI+QL+ D + I G+ Sbjct: 31 IVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDL-CRNGALCIMQLAFPDAVYLVDAIEGGK 89 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT------ 114 + L + K+ H + D L++ FG+++ V T+IA L Sbjct: 90 ELIQACKPALESDHITKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIEEQEQEGKKM 149 Query: 115 -----NQHGLKDNL--KELLGI-NISKAQQSS----D---WSADDLSDEQLQYAASDVVH 159 N L K GI K + + D W+ LSD ++ A DV Sbjct: 150 TSDDYNYISFVSLLADKRYCGILYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRF 209 Query: 160 LHALRLQFTEKLQRLGRSDLA 180 L ++ + EKL ++ LA Sbjct: 210 LLSIYAKMMEKLSKVSLWRLA 230 >gi|156089519|ref|XP_001612166.1| 3'-5' exonuclease domain containing protein [Babesia bovis] gi|154799420|gb|EDO08598.1| 3'-5' exonuclease domain containing protein [Babesia bovis] Length = 230 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 23/177 (12%) Query: 7 HEGDIPAECAARYVDAIAVDTE-------------TLGLMPRRDRLCIVQLSPGDGTVDI 53 H D A + + D E P ++Q++ D + Sbjct: 45 HYQDSAAALLS--TKCVGFDLEYVPDYYASIHRQSFDRTRP-----AVIQIASND-ICLV 96 Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 + ++ +L D KI H D+ +++ FGVR R + S Sbjct: 97 YLMYKIGHLPSSVSHILSDPDILKISHGAPSDMRLMYRHFGVRSRSFVDLQ--SVCEELQ 154 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 LK ++ +LG+ +SK QQ S+W A +LS +Q++YAA+D A L+ K Sbjct: 155 LRPCSLKSVVQRVLGLRLSKKQQCSNWEAAELSQQQIKYAATDAWVTLAAFLKLKPK 211 >gi|294950345|ref|XP_002786583.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239900875|gb|EER18379.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 387 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 20/173 (11%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 A I VD E + L +LC +Q++ G + L +L D Sbjct: 34 LALAKEGVIGVDCEGVMLGRF-GQLCTIQIATERGDAFMFDACRPGVVQS-LAPLLSDPS 91 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLKELL---GIN 130 K+FH R D + L++ G+ + VF T+ A+ L + Q G + ++++L Sbjct: 92 VLKVFHDCREDSSALYHQHGISLDCVFDTQ-ATMLVGNRMDHQTGYWELVRQVLFDGEKE 150 Query: 131 IS----------KAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +S K Q + D W L + YA S +HL L + Sbjct: 151 VSHEVLGDDPQFKTQMAEDPELWRRRPLPQHVVDYALSGCLHLIPLYHAIQSR 203 >gi|218680574|ref|ZP_03528471.1| ribonuclease D [Rhizobium etli CIAT 894] Length = 262 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 + ++I K+ + +DWS LSD+QL+YA +DV HL + L +L R GR+ + Sbjct: 2 RIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEM 61 Query: 185 NFLMDRAELDLL---GWENVD 202 + L R DL W+ + Sbjct: 62 DILEARETYDLHPDDAWQRLK 82 >gi|13278238|gb|AAH03952.1| Exosc10 protein [Mus musculus] Length = 517 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%) Query: 89 LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDE 148 L FG+ V +F T A+RL +H L L+ G+ +K Q +DW L +E Sbjct: 5 LQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEE 62 Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLG 175 L YA D +L + + +L G Sbjct: 63 MLSYARDDTHYLLYIYDRMRLELWERG 89 >gi|148909222|gb|ABR17711.1| unknown [Picea sitchensis] Length = 317 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 18/176 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I D E + L RLCI+QL+ D + + G L K+ H Sbjct: 36 VIGFDCEGVDLARY-GRLCIMQLAFEDAVYLVDAVEGGHLLMQACKPALESVYVTKVVHD 94 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLK--ELLGIN-I 131 + D L++ +G+++ V T+IA L + L G++ Sbjct: 95 CKRDSEALYFQYGIKLNNVVDTQIAYSLIEEQEGRKWAPDEYISFVGLLADPRYCGVSYA 154 Query: 132 SKAQQSS----D---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 K + + D W L+ + AA DV L + + EKL+ LA Sbjct: 155 EKEEVRTLLREDPKFWEHRPLTYMMKKTAADDVRFLLHIYNKMIEKLELHSLWQLA 210 >gi|168010031|ref|XP_001757708.1| predicted protein [Physcomitrella patens subsp. patens] gi|162690984|gb|EDQ77348.1| predicted protein [Physcomitrella patens subsp. patens] Length = 294 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 64/177 (36%), Gaps = 22/177 (12%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I D E + L RLCI+QL+ D + + G L K+ H Sbjct: 13 VIGFDCEGVDLARY-GRLCIMQLAFDDAVYLVDAVMGGNSLMQACKLGLESPYVIKVCHD 71 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-------NQHGLKDNL--KELLG---- 128 + D L++ +G+++ VF T+IA L + + D L + G Sbjct: 72 CKRDSEALYFQYGIKLNNVFDTQIAYTLLKEQHGKKWVPDDYISFVDLLADERYCGMIYD 131 Query: 129 ------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + + K Q W+ + + AA DV L + + + L L + L Sbjct: 132 EKEEVRVLLRKDPQF--WAHRPWTVMMKRVAADDVRFLLRIYERMVKSLTELSKWRL 186 >gi|168060140|ref|XP_001782056.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666467|gb|EDQ53120.1| predicted protein [Physcomitrella patens subsp. patens] Length = 319 Score = 103 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 25/199 (12%) Query: 4 IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 I H +P I D E + L RLC++QL+ + + + G Sbjct: 8 IVTHPAQLPTSFLRPNPHQPFVIGFDCEGVDLARY-GRLCVMQLAFDNAVYLVDAVLGGN 66 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT------ 114 + L K+ H + D L++ + +++ VF T+IA L Sbjct: 67 ALMQSCKLGLESPYIIKVCHDCKRDSEALYFQYNIKLNNVFDTQIAFSLLEEQRGKNWMP 126 Query: 115 -NQHGLKDNL--KELLGINIS----------KAQQSSDWSADDLSDEQLQYAASDVVHLH 161 + D L + G+ K Q W+ + + AA DV L Sbjct: 127 DDYISFVDLLADERYCGVAYDEKEEVRMLLRKDPQF--WAHRPWTVMMKRVAADDVRFLL 184 Query: 162 ALRLQFTEKLQRLGRSDLA 180 + + + L L + L Sbjct: 185 CIYERMVKSLTDLSKWRLH 203 >gi|325118112|emb|CBZ53663.1| Exonuclease 3'-5' domain-like-containing protein 1, related [Neospora caninum Liverpool] Length = 355 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 15/160 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-PNLVGMLVDEKREKIFHY 81 +A+D E + L R+C VQ++ T+ + G L +L K+ H Sbjct: 78 VALDCEGVALGRF-GRMCTVQIATSTHTLLLDAFKTGVVGGNKKLKEILESPHIVKVCHD 136 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN----QHGLKDNLKELLGIN---ISKA 134 R D + L + +R+R VF T++A ++ Q L + + L + ++K Sbjct: 137 CREDASALLHQHTIRLRNVFDTQVAHQIWSEQKGETRFQASLSELFRSFLNLRDGGVAKQ 196 Query: 135 QQS------SDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 +S S W L + L+YA V HL L Sbjct: 197 AKSAMEADPSVWCQRPLPTDLLRYAVFGVSHLLDLAHILA 236 >gi|330837264|ref|YP_004411905.1| 3'-5' exonuclease [Spirochaeta coccoides DSM 17374] gi|329749167|gb|AEC02523.1| 3'-5' exonuclease [Spirochaeta coccoides DSM 17374] Length = 298 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 24/208 (11%) Query: 11 IPAECAARYVDAIAVD--TETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 + + ++ +A+D E L + LC++QL G I +A L Sbjct: 16 LLDTWRQKGINLVAMDFEGEFN-LHVYGEHLCLIQLYDGHDFYLIDPFIV---SARTLKS 71 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL- 127 L + EKI D +++ +G+++R + ++ + N GL +++ + Sbjct: 72 FLEADDIEKIMFDCASDASLVRKQYGIQLRNICDLRVMAMALGFMGNLTGL---IEQYVP 128 Query: 128 -GINISKAQ-------------QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + + Q ++W L+ QL YA DV HL LR ++ + Sbjct: 129 RNVPLIAESTDSSEKSGSKKKNQMTNWMKRPLTPSQLVYALEDVAHLFVLRSALVAEIAK 188 Query: 174 LGRSDLATSCCNFLMDRAELDLLGWENV 201 G + + + GWE + Sbjct: 189 AGLEEKVAALMRLAPLPKGPEKPGWEKL 216 >gi|50508632|dbj|BAD31028.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica Group] gi|50509503|dbj|BAD31184.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica Group] Length = 1031 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 2/97 (2%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 IFH D+ L F + V +F T A + Q L L+ G+ K Q Sbjct: 303 IFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQKSLAYLLELYCGVTTDKTMQR 360 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 DW L+ E +QYA D +L + +L Sbjct: 361 EDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAK 397 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 4/71 (5%) Query: 8 EGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E D E AR +D A AVDTE L ++Q+S I IA Sbjct: 149 ETDAQLEDLARLLDDEKAFAVDTEQHSLRSFLGYTALMQISTQKADYLIDTIAL-HDVMS 207 Query: 65 NLVGMLVDEKR 75 L + + Sbjct: 208 ILRPVFANPSI 218 >gi|195455204|ref|XP_002074609.1| GK23167 [Drosophila willistoni] gi|194170694|gb|EDW85595.1| GK23167 [Drosophila willistoni] Length = 1008 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 24/209 (11%) Query: 6 VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V DI + AA+ I++D E + L + + ++++ G G + + + Sbjct: 539 VFVTDILLKYAAKNESIVISLDCEGINLG-LKGEITLIEIGTGRGEAFLFDVQSCPAMVS 597 Query: 65 N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116 + L +L E+ K+ H R D A L+ FG+ +R VF T+ A + + N Sbjct: 598 DGGLKTLLEHEQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKA 657 Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163 L ++ + + K D W+ L+ E + YAA DV+ L L Sbjct: 658 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 716 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +++ R L+ C ++ + + Sbjct: 717 FGNLARQIKPENRQLLSELCTEQILMQIK 745 >gi|321451818|gb|EFX63353.1| hypothetical protein DAPPUDRAFT_35911 [Daphnia pulex] Length = 143 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 3/115 (2%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I VD E R C++Q+S I + P L + D KIF Sbjct: 31 VIGVDLEHHSYRSYRGITCLMQISTEKTDYIIDTLKLWDHLQP-LNKVFGDPNIVKIFQG 89 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 D+ L FG+ + +F T A+ L + GL L+ ++++K Q Sbjct: 90 ADSDVIWLQRDFGIYIVNLFYTLQAASLLG--FEKKGLPFLLQHYCQVHVNKKYQ 142 >gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool] Length = 2215 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 12/131 (9%) Query: 86 IAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSA 142 I L GV V P+F T IA+++ G K ++ LG+ + K Q+SDWS+ Sbjct: 1691 IGALQSDGGVYVSGPIFDTLIAAKVVEAGVMGTGFKLLQVVERFLGVLMDKRMQASDWSS 1750 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG----- 197 LS EQL YAA D + L+ + KL+ ++ L ++L G Sbjct: 1751 PHLSQEQLLYAARDAAVMLPLQQRLQRKLEAYDLQEVMDVEMRCLRPVVAMELNGMQIEH 1810 Query: 198 --WENVDIFSH 206 W+ ++ +H Sbjct: 1811 ARWKELE--AH 1819 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKI 78 ++ VD ET GL P R+ ++QL+ D + + A ++P+L +L + K+ Sbjct: 1527 SMGVDVETTGLDPYSARVRLLQLALPDFPTLLFDLFALPVSSPSLRAVRLLLASPRIRKV 1586 Query: 79 FHYGRFDIAVLFYTFGV-----RVRP 99 FH G+FD+ G+ R P Sbjct: 1587 FHNGKFDL-CFLAAAGLGGPQSRPAP 1611 >gi|332021038|gb|EGI61427.1| Exonuclease 3'-5' domain-containing protein 1 [Acromyrmex echinatior] Length = 832 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 24/192 (12%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKIF 79 ++ D E + L R +L +VQ+ G + + G A L +L K+ Sbjct: 417 VVSFDCEGINLGV-RGQLTLVQIGTMSGQAYVFDLVTCPGLVQAGGLQKLLEHPHVTKVI 475 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL----- 126 H R D L+ F + + VF T+ A + + L Sbjct: 476 HDCRNDSVNLYNQFNITLTNVFDTQAAHAVLQFQDTGKPVYKVKNVNLNTLCDHYNAPCN 535 Query: 127 -LGINIS----KAQQSSDWSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDLA 180 L + K Q+ WS ++ E L YA+SDV+ L + + ++ S A Sbjct: 536 PLKEQLKNIYRKDQRY--WSRRPITREMLIYASSDVLSLVPQVYNAMSRLIKPEQESLFA 593 Query: 181 TSCCNFLMDRAE 192 C + Sbjct: 594 ELCEEQIQMHIR 605 >gi|157129284|ref|XP_001655349.1| hypothetical protein AaeL_AAEL002475 [Aedes aegypti] gi|108882084|gb|EAT46309.1| conserved hypothetical protein [Aedes aegypti] Length = 939 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 21/191 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79 ++ D E + L R ++ ++QL G I +A+ P+ + +L EK K+ Sbjct: 480 VVSFDCEGINLGV-RGQITMIQLGTTRGEAFIFDVASCPDMVPHGGIKEVLESEKVIKVI 538 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL-LGIN 130 H R D LF F + ++ VF T+ A + + L + +N Sbjct: 539 HDCRNDSVNLFNQFQILLKNVFDTQSAHAVLQFQDQGKQVYKVKNVSLNTLCEMYNATVN 598 Query: 131 ISKAQ----QSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLGRSDLAT 181 K Q D W+ L+ + L YAA DV+ L L L ++ R LA Sbjct: 599 PMKDQLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMATSIKAEFRELLAE 658 Query: 182 SCCNFLMDRAE 192 C ++ Sbjct: 659 LCTEQILMLIR 669 >gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246] Length = 203 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 12/134 (8%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII--RIAAGQKNAPNLVGML 70 A+ + +AVDTET GL P RDR+ ++Q++ G I A + L L Sbjct: 41 ADALQGWAGPVAVDTETTGLDPARDRVRLIQVAAGQDVALIDVFAFADPVADLRPLFAAL 100 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-------QHGLKDNL 123 D+ E++ H +FD+ L F VF T +ASR+ +HGL D Sbjct: 101 ADK--EQVGHNLQFDLRFL-APFEFVPGKVFDTILASRVRHAGDRAESNGRFRHGLGDAA 157 Query: 124 KELLGINISKAQQS 137 LG ++ K++Q+ Sbjct: 158 ARELGRSLDKSEQT 171 >gi|223995113|ref|XP_002287240.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976356|gb|EED94683.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 743 Score = 100 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 53/147 (36%), Gaps = 14/147 (9%) Query: 38 RLCIVQLSPG----DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY-GRFDIAVLFYT 92 R C++Q++ D +D + L + D + KI H G D L Sbjct: 321 RTCLIQMTANTVVKDYVIDPLAPNVWDAIPHYLGPLFSDPRIVKIGHGIGGMDTTSLHRD 380 Query: 93 FGVRVRPVFCTKIASR-LTRTYTNQHGLKDNLKELLGI-------NISKAQQSSDWSADD 144 FG+ + F T AS L GL K G+ N+ Q SDW Sbjct: 381 FGIVIVNAFDTFEASAVLLHGKKGGLGLAKLCKHY-GLPCWQDYANLKSQFQCSDWRKRP 439 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKL 171 L D+ L+Y DV L +R L Sbjct: 440 LCDDALEYGRYDVRFLITIRQLLLRDL 466 >gi|242008039|ref|XP_002424820.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508370|gb|EEB12082.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 843 Score = 99.7 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 35/198 (17%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA--GQKNAPNL 66 DI ++ ++VD E + L + +L ++Q+ +G V + + A L Sbjct: 387 DDILSKAKEGSEVVVSVDCEGINLGS-KGKLTLIQIGTMNGNVYVFDLVTCSNLFEAGGL 445 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHG 118 +L ++ K+ H R D + +++ FGV +R VF TK A + + Sbjct: 446 ARLLTSDQVIKVIHDCRNDSSTIYFQFGVILRNVFDTKSAHAVIQMQEMGKPVHKVKDVS 505 Query: 119 LKDN----------LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV----HLHAL- 163 L +KE NI K Q W LS + + YAA+DV+ HL++L Sbjct: 506 LNTLYEIYNLPTNPMKEYFK-NIYKKDQKI-WGRRPLSRDMIVYAAADVLSLVPHLYSLM 563 Query: 164 -------RLQFTEKLQRL 174 + E+L Sbjct: 564 LKIIKPEYKKLLEELCEE 581 >gi|260772433|ref|ZP_05881349.1| ribonuclease D [Vibrio metschnikovii CIP 69.14] gi|260611572|gb|EEX36775.1| ribonuclease D [Vibrio metschnikovii CIP 69.14] Length = 267 Score = 99.3 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 + Y G +LL + + K++ +DW A LS++QL+YAA+DV +L + Sbjct: 1 MAAFI-GYGLSTGFAALANDLLNVELDKSESRTDWLARPLSEKQLEYAAADVFYLLPMFE 59 Query: 166 QFTEKLQRLGRSDLATSCCNF 186 Q +K+ + G D Sbjct: 60 QLLDKVTQAGWWDAVLQESQL 80 >gi|170041336|ref|XP_001848422.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167864931|gb|EDS28314.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 982 Score = 99.3 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 21/191 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79 I+ D E + L R ++ ++QL G I +A P+ + +L EK K+ Sbjct: 505 VISFDCEGINLGV-RGQITMIQLGTTRGEAFIFDVATCPDMVPHGGIKQVLEAEKVIKVI 563 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL-LGIN 130 H R D L+ F + +R VF T+ A + + L + +N Sbjct: 564 HDCRNDSVNLYNQFQIMLRNVFDTQSAHAVLQFQDQGKQVYKVKNVSLNTLCEMYNATVN 623 Query: 131 ISKAQ----QSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLGRSDLAT 181 K Q D W+ L+ + L YAA DV+ L L L ++ R LA Sbjct: 624 PMKDQLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMATSIKPEFRELLAE 683 Query: 182 SCCNFLMDRAE 192 C ++ Sbjct: 684 LCTEQILMLIR 694 >gi|218749845|ref|NP_001136335.1| egalitarian [Nasonia vitripennis] Length = 829 Score = 98.9 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 22/183 (12%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGM 69 P + AA ++ D E + + P + RL ++Q+ G + I + A L + Sbjct: 401 PRKSAADGKSVVSFDCEGINVGP-KGRLTLLQIGTMSGLIYIFDLITCPNILQAGGLQKL 459 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKD 121 L E K+ H + D A LF+ FG+ + +F T+ A + L Sbjct: 460 LESENVIKVIHDCKNDSANLFHQFGITLVNIFDTQAAHSVIEYQNTGKPVYKVKNANLNT 519 Query: 122 NLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHAL-RLQFTEKL 171 L + + D W+ L+ + + YA+SDV L L ++ + Sbjct: 520 LCDLYGAPSNVLKEQLKNIYRR-DQRYWARRPLTRDMIVYASSDVQSLVPLIYNAMSKLI 578 Query: 172 QRL 174 + Sbjct: 579 KPE 581 >gi|70950310|ref|XP_744489.1| exonuclease [Plasmodium chabaudi chabaudi] gi|56524464|emb|CAH74590.1| exonuclease, putative [Plasmodium chabaudi chabaudi] Length = 406 Score = 98.1 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 32/203 (15%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPG--------DGTVDIIRIAAGQKNAPNLVGMLVD 72 D IAVD E L ++C++Q+ + + N+ + ++ + Sbjct: 103 DIIAVDFEGTNLGRY-GKVCLMQIYTEIEKKDKVFEKYYIFDLLNKSVINS--VKKIIEN 159 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-----RTYTNQHGLKDNLKELL 127 +K K+ H R D + L+ ++ V+ T A L Q + L + L Sbjct: 160 KKTLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLLLEKKKENDIYQVSFLNLLHDYL 219 Query: 128 GI------NISKAQQSSD--WSADDLSDEQLQYAASDVVHLHALR---LQFTEKLQRLGR 176 G+ NI K +D W LS + YA +V +L + + K + L + Sbjct: 220 GVKDDCLNNIKKEMYKNDKIWEIRPLSKISIIYALKNVKYLLPIYKIFDKLISKKEVLEK 279 Query: 177 S-DLATSCCNFLMDRAEL--DLL 196 S D C L R +L DL Sbjct: 280 SKDFVNYCF--LNSRYKLPVDLA 300 >gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] Length = 704 Score = 98.1 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 73/211 (34%), Gaps = 36/211 (17%) Query: 18 RYVDAIAVDTETLGLM------PRRDRLCIVQLSPGDGTVDIIRIAAGQK---------- 61 + D ET P + ++Q++ V +I I G Sbjct: 37 QQSPRFGFDLETFSRASTPAIAPETGEIRLIQIAIEQPAVQVIVIDLGWTAKERSRIHQK 96 Query: 62 -----NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-------- 108 L L + + E + H F+ + + +R + TK+ S+ Sbjct: 97 LESLGFWTTLQERLANPQVEVVGHSLDFEQRWMLAKYNFPIRNLRDTKLMSQVYWAGLDP 156 Query: 109 -LTRTYTNQHGLKDNLKELLGINISKAQQSSDWS-----ADDLSDEQLQYAASDVVHLHA 162 L + + H L+ LGI+I K++Q+SDW LS+ Q YAA+D Sbjct: 157 WLLKQHGKPHSLESVCLR-LGISIDKSRQTSDWGWGDLGNGQLSNNQFNYAANDASITIK 215 Query: 163 LRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 + +L+ +G C A++ Sbjct: 216 VHDLLEPRLKEIGVWTSYLIECAASPAFAQM 246 >gi|195119318|ref|XP_002004178.1| GI19770 [Drosophila mojavensis] gi|193909246|gb|EDW08113.1| GI19770 [Drosophila mojavensis] Length = 991 Score = 97.0 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 80/209 (38%), Gaps = 23/209 (11%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V + + + AI++D E + L + + ++++ G + + + Sbjct: 522 FVTDALLDLAKDEEHNIAISLDCEGINLGI-KGEITLIEIGTARGEAFLFDVQSCPAMVS 580 Query: 65 N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116 + L +L ++ K+ H R D L+ FG+ +R VF T+ A + + N Sbjct: 581 DGGLKTLLEHDQVIKVIHDCRNDAVNLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKA 640 Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163 L ++ + + K D W+ L+ E + YAA DV+ L L Sbjct: 641 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHEQL 699 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 ++++ R + C ++ + + Sbjct: 700 FGTLAQQIKPENRQLFSELCTEQILMQIK 728 >gi|82753293|ref|XP_727619.1| 3'-5' exonuclease [Plasmodium yoelii yoelii str. 17XNL] gi|23483550|gb|EAA19184.1| 3'-5' exonuclease, putative [Plasmodium yoelii yoelii] Length = 410 Score = 97.0 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 16/179 (8%) Query: 7 HEGDIPAECAARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGD-GTVDIIRIAAGQKNAP 64 + +I + I +D E G R + I+Q+ D D+ + A Sbjct: 57 YINEIEQNVMNENLKIIGLDIE--GYKIGRNGTVSIIQICAKDIYIFDLYKCDNSYLFAK 114 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----RTYTNQHGLK 120 L + ++ K+ H R D ++LF + + + +F T+IA L + Q Sbjct: 115 YLKELFENKNIIKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQISYD 174 Query: 121 DNLKELL------GINISKAQQSSD--WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 D L + L I K + + +S E + YA DV++L L L E L Sbjct: 175 DLLYKCLFLNNNHKIYFHKIISLDNKIYLKRPISKELIHYAVQDVLYLKPLMLNLVETL 233 >gi|156380461|ref|XP_001631787.1| predicted protein [Nematostella vectensis] gi|156218833|gb|EDO39724.1| predicted protein [Nematostella vectensis] Length = 446 Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 6/155 (3%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 DA+ DTE + +C++QL+ D + + P L +L K H Sbjct: 192 DALGFDTEHCSS---QGLVCVIQLASADKAILWHCHNFNHRMPPGLRSLLT-GNVYKTGH 247 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D ++ F V + + T ++ L+ LG ++SK Q S+W Sbjct: 248 ACLQDAIMISNQFKVHAKNLIDTCHWAKDLHCMPR--SLQAMCAIFLGEHLSKRHQQSNW 305 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 DLS Q+ YAA+D + + +RLG Sbjct: 306 KKSDLSPGQVAYAATDAWVSLRVYQEMKRHGERLG 340 >gi|195026828|ref|XP_001986344.1| GH20576 [Drosophila grimshawi] gi|193902344|gb|EDW01211.1| GH20576 [Drosophila grimshawi] Length = 995 Score = 96.6 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 75/192 (39%), Gaps = 23/192 (11%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79 A+++D E + L + + ++++ G + + + L +L ++ K+ Sbjct: 545 AVSLDCEGINLGV-KGEITLIEIGTARGEAFLFDVQTCPAMVSDGGLKTLLEHDQVIKVI 603 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLKEL----- 126 H R D L+ FG+ +R VF T+ A + + N L ++ Sbjct: 604 HDCRNDAVNLYQQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLCEQYNAPCN 663 Query: 127 -LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLGRSDLA 180 + + K D W+ L+ E + YAA DV+ L L ++++ R + Sbjct: 664 PIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLAQQIKPENRVLFS 722 Query: 181 TSCCNFLMDRAE 192 C ++ + + Sbjct: 723 ELCTEQILMQIK 734 >gi|195401414|ref|XP_002059308.1| GJ18283 [Drosophila virilis] gi|194142314|gb|EDW58720.1| GJ18283 [Drosophila virilis] Length = 1176 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 76/192 (39%), Gaps = 23/192 (11%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79 AI++D E + L + + ++++ G + + + + L +L ++ K+ Sbjct: 726 AISLDCEGINLGI-KGEITLIEIGTARGEAFLFDVQSCPAMVSDGGLKTLLEHDQVIKVI 784 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLKEL----- 126 H R D L+ FG+ +R VF T+ A + + N L ++ Sbjct: 785 HDCRNDAVNLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLCEQYNAPCN 844 Query: 127 -LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLGRSDLA 180 + + K D W+ L+ E + YAA DV+ L L ++++ R + Sbjct: 845 PIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGSLAQQIKPENRQLFS 903 Query: 181 TSCCNFLMDRAE 192 C ++ + + Sbjct: 904 ELCTEQILMQIK 915 >gi|195154607|ref|XP_002018213.1| GL17589 [Drosophila persimilis] gi|194114009|gb|EDW36052.1| GL17589 [Drosophila persimilis] Length = 831 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 24/193 (12%) Query: 6 VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V DI + AA+ +++D E + L + + ++++ G + + + Sbjct: 550 VFVTDILLKYAAKNEGIVVSLDCEGINLG-LKGEITLIEIGTARGEAFLFDVQSCPAMVT 608 Query: 65 N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116 + L +L E+ K+ H R D A L+ FG+ +R VF T+ A + + N Sbjct: 609 DGGLKTVLEHEQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKA 668 Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRL 165 L ++ + + K D W+ L+ E + YAA DV+ L + Sbjct: 669 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVL--IHD 725 Query: 166 QFTEKLQRLGRSD 178 Q L R R + Sbjct: 726 QLFGSLARQIRPE 738 >gi|198458527|ref|XP_002138553.1| GA24836 [Drosophila pseudoobscura pseudoobscura] gi|198136373|gb|EDY69111.1| GA24836 [Drosophila pseudoobscura pseudoobscura] Length = 830 Score = 96.2 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 24/193 (12%) Query: 6 VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V DI + AA+ +++D E + L + + ++++ G + + + Sbjct: 549 VFVTDILLKYAAKNEGIVVSLDCEGINLG-LKGEITLIEIGTARGEAFLFDVQSCPAMVT 607 Query: 65 N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116 + L +L E+ K+ H R D A L+ FG+ +R VF T+ A + + N Sbjct: 608 DGGLKTVLEHEQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKA 667 Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRL 165 L ++ + + K D W+ L+ E + YAA DV+ L + Sbjct: 668 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVL--IHD 724 Query: 166 QFTEKLQRLGRSD 178 Q L R R + Sbjct: 725 QLFGSLARQIRPE 737 >gi|307198047|gb|EFN79100.1| Exonuclease 3'-5' domain-like-containing protein 1 [Harpegnathos saltator] Length = 831 Score = 96.2 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKIF 79 I+ D E + L + +L +VQ+ G + + A L +L + K+ Sbjct: 420 VISFDCEGINLGV-KGQLTLVQIGTMSGQAYVFDLFTCPSLVQAGGLQKLLEHKNVVKVI 478 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL----- 126 H R D L+ F + + VF T+ A + + L Sbjct: 479 HDCRNDSVNLYNQFKIMLTNVFDTQAAHAVLQFQETGKPVYKVKNVNLNTLCDHYGAPCN 538 Query: 127 -LGINIS----KAQQSSDWSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDLA 180 L + K Q+ WS ++ + L YA+SDV+ L + + ++ + A Sbjct: 539 PLKEQLKNIYRKDQRY--WSRRPMTRDMLIYASSDVLSLVPQVYNAMSRLIKPEIQGLFA 596 Query: 181 TSCCNFLMDRAE 192 C + Sbjct: 597 ELCEEQIQMHIR 608 >gi|118395219|ref|XP_001029962.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89284244|gb|EAR82299.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 1087 Score = 95.8 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 59/173 (34%), Gaps = 14/173 (8%) Query: 19 YVDAIAVDTETLGLMPRR----DR----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 I +D E D+ +C +QLS I + + + +L + Sbjct: 893 QHQIIGIDLE------YWTDNKDQKLSFICTLQLSTLSSNFVIDILNLSKSVSVHLKSIF 946 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 K K+FH G D+ +L + +F T A L ++ L N Sbjct: 947 ESPKFVKVFHGGETDLKLLKKDLNFNLVNIFDTAKAYLKQNKGAGSVSLSSLSQQYLNYN 1006 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + K Q+SDW L L YA D L + + S +A SC Sbjct: 1007 VDKQYQTSDWRIRPLPKPMLNYAMYDSFITLILFFVMKSTISQEDLSIIAISC 1059 >gi|221485002|gb|EEE23292.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 672 Score = 95.4 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 70/194 (36%), Gaps = 20/194 (10%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 GD+P + L P R L ++QL+ I +++A P L Sbjct: 181 GDLPPSLSL-----------FASLSP-RPPLALIQLASP-TVACIWQLSALGGLPPGLTA 227 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L+ K+ ++ L FGV R C A+ TN L+ L Sbjct: 228 LLLRADVVKVTQGATGEVEALQREFGVSPRNFLCLHAAAIALGCATNSRSLQALCGLFLE 287 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 + K+ Q S WS D LS EQ YAA+D + E++ + Sbjct: 288 RFLDKSLQLSTWSRDALSPEQCMYAATDAYVSRQVLFGMREQVVP-------KEVMRLVE 340 Query: 189 DRAELDLLGWENVD 202 +A L L +N D Sbjct: 341 AQATLQLRCTQNED 354 >gi|66811680|ref|XP_640019.1| 3'-5' exonuclease domain-containing protein [Dictyostelium discoideum AX4] gi|60468043|gb|EAL66053.1| 3'-5' exonuclease domain-containing protein [Dictyostelium discoideum AX4] Length = 390 Score = 95.4 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 24/173 (13%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREKI 78 I +D E + + + D + +VQ+S +G + + I N L +L K K+ Sbjct: 187 IGLDIEAIEMGKKGD-ISLVQISTPNGRIYLFDIIKMGANVTPFKYGLKEVLESVKILKV 245 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT------YTNQHGLKDNL-----KELL 127 H R D +LF+ + V + V+ +IA L + ++G + + ++ Sbjct: 246 VHDCRRDSEILFHRYQVALAHVYDVQIAHALVQKKIQGNIPIRRYGFNELIDLYTSRKYS 305 Query: 128 GINIS-K---AQQSSD----WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 I I K QQ + W+ L + + YA+ D L + KLQ Sbjct: 306 EICIDIKFKVKQQFENQPEVWAKRPLPKDFIDYASLDAACLLPIYYHIKPKLQ 358 >gi|237836145|ref|XP_002367370.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii ME49] gi|211965034|gb|EEB00230.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii ME49] gi|221505945|gb|EEE31580.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma gondii VEG] Length = 672 Score = 95.4 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 70/194 (36%), Gaps = 20/194 (10%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 GD+P + L P R L ++QL+ I +++A P L Sbjct: 181 GDLPPSLSL-----------FASLSP-RPPLALIQLASP-TVACIWQLSALGGLPPGLTA 227 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L+ K+ ++ L FGV R C A+ TN L+ L Sbjct: 228 LLLRADVVKVTQGATGEVEALQREFGVSPRNFLCLHAAAIALGCATNSRSLQALCGLFLE 287 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188 + K+ Q S WS D LS EQ YAA+D + E++ + Sbjct: 288 RFLDKSLQLSTWSRDALSPEQCMYAATDAYVSRQVLFGMREQVVP-------KEVMRLVE 340 Query: 189 DRAELDLLGWENVD 202 +A L L +N D Sbjct: 341 AQATLQLRCTQNED 354 >gi|158292666|ref|XP_314043.4| AGAP005155-PA [Anopheles gambiae str. PEST] gi|157017099|gb|EAA09562.4| AGAP005155-PA [Anopheles gambiae str. PEST] Length = 1064 Score = 95.4 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 71/197 (36%), Gaps = 21/197 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDE 73 + ++ D E + L R ++ +VQL G I IA L +L E Sbjct: 552 SLEEQAIVSFDCEGINLGV-RGQITMVQLGTTRGEAFIFDIATCPDMVVEGGLKEILESE 610 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKE 125 K K+ H R D LF F + +R VF T+ A + + L + Sbjct: 611 KVIKVIHDCRNDSVNLFNQFQILLRNVFDTQSAHAVLQFQDQGKQVYKVKNVSLNTLCEM 670 Query: 126 L-LGINISKAQ----QSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLG 175 +N K Q D W+ L+ + L YAA DV+ L L L ++ Sbjct: 671 YNATVNPMKDQLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMATSIRPEY 730 Query: 176 RSDLATSCCNFLMDRAE 192 R L+ C ++ Sbjct: 731 RELLSELCTEQILMLIR 747 >gi|68073827|ref|XP_678828.1| 3'-5' exonuclease [Plasmodium berghei strain ANKA] gi|56499420|emb|CAI00231.1| 3'-5' exonuclease, putative [Plasmodium berghei] Length = 383 Score = 95.4 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 13/144 (9%) Query: 42 VQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 +Q+ D D+ + A L + ++ K+ H R D ++LF + + + + Sbjct: 91 IQICAKDIYIFDLYKCDNSYLFAKYLKELFENKSIIKVTHDCREDCSILFNQYNINLNNI 150 Query: 101 FCTKIASRLT----RTYTNQHGLKDNLKELL------GINISKAQQSSD--WSADDLSDE 148 F T+IA L + Q D L + L I K ++ + +S E Sbjct: 151 FDTQIAYTLILKKSKKELYQISYDDLLYKCLFLNNNHKIYFHKIISLNNKIYLKRPISKE 210 Query: 149 QLQYAASDVVHLHALRLQFTEKLQ 172 + YA DV++L L L E L+ Sbjct: 211 LIHYAVQDVLYLKPLMLNLIEVLR 234 >gi|317051081|ref|YP_004112197.1| 3'-5' exonuclease [Desulfurispirillum indicum S5] gi|316946165|gb|ADU65641.1| 3'-5' exonuclease [Desulfurispirillum indicum S5] Length = 213 Score = 94.7 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 8/166 (4%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 A A + + DTET R+ + ++QL+ + V + +I+ A L+ + Sbjct: 43 ALPALQQCPVLGFDTET-RPTFRKGQFFLPSLIQLATHNH-VYLFQISRFNLPA-GLLEI 99 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + K+ +D+ L + IA TR Q GL+ L G Sbjct: 100 FSSQHIVKVGAGLNYDVKQLQQIAAFDEQSFVD--IAHLATRLGIKQTGLRTLCALLFGK 157 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +SK + SDWS LS EQ++YAA+D L + L++ Sbjct: 158 RLSKKARCSDWSRKHLSAEQIKYAAADAWISRELYMALNSLLEKQN 203 >gi|70949124|ref|XP_744002.1| 3'-5' exonuclease [Plasmodium chabaudi chabaudi] gi|56523765|emb|CAH76355.1| 3'-5' exonuclease, putative [Plasmodium chabaudi chabaudi] Length = 383 Score = 94.7 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 68/182 (37%), Gaps = 16/182 (8%) Query: 7 HEGDIPAECAARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGD-GTVDIIRIAAGQKNAP 64 + +I + I +D E G R + I+Q+ D D+ + Sbjct: 57 YINEIEKNVMNENLKIIGLDIE--GYKIGRNGTVSIIQVCAKDIYIFDLYKCDNSYLFVK 114 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----RTYTNQHGLK 120 L + ++ K+ H R D ++LF + + + +F T+IA L + Q Sbjct: 115 YLKELFENKNIIKVAHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQISYD 174 Query: 121 DNLKELL------GINISKAQQSSD--WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 D L + L I K + + +S E + YA DV++L L L + L Sbjct: 175 DLLYKCLFLNNNHKIYFHKIISLDNKIYLKRPISKELIHYAVQDVLYLKPLMLNLVDTLY 234 Query: 173 RL 174 R Sbjct: 235 RK 236 >gi|240949175|ref|ZP_04753521.1| ribonuclease D [Actinobacillus minor NM305] gi|240296407|gb|EER47047.1| ribonuclease D [Actinobacillus minor NM305] Length = 250 Score = 94.7 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%) Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++ L I + K +DW A LS+ Q QYAA+DV +L + + ++L Sbjct: 1 KLVEHYLHIELDKGASRTDWLARPLSEIQCQYAAADVFYLLPVYQKMQKELSENRWQKAV 60 Query: 181 TSCCNFLMDRAELD 194 C ++R D Sbjct: 61 EEECQKFLNRKLKD 74 >gi|221468312|ref|NP_726360.3| egalitarian [Drosophila melanogaster] gi|220902361|gb|AAF47054.4| egalitarian [Drosophila melanogaster] Length = 1004 Score = 94.3 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 24/209 (11%) Query: 6 VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V DI + AA+ +++D E + L + + ++++ G + + + Sbjct: 540 VFVTDIILKYAAKNESIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 598 Query: 65 N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116 + L +L ++ K+ H R D A L+ FG+ +R VF T+ A + + + Sbjct: 599 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 658 Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163 L ++ + + K D W+ L+ E + YAA DV+ L L Sbjct: 659 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 717 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +++ R+ + C ++ + + Sbjct: 718 FGNLARQIKPENRALFSELCTEQILMQIK 746 >gi|328872117|gb|EGG20484.1| 3'-5' exonuclease domain-containing protein [Dictyostelium fasciculatum] Length = 347 Score = 94.3 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 26/173 (15%) Query: 22 AIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--NLVGMLVDEKREK 77 +A D E +G + +VQ+ +G V I I NA L +L + K Sbjct: 145 VVAFDLEGWEMGKN---GEVSLVQIGLKNGRVFIFDIMVLGHNAFKHGLKDLLESKIILK 201 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT------YTNQHGLKDNL-----KEL 126 I H R D +L++ + V + V+ +IA L + + GL + K Sbjct: 202 IVHDCRRDSEILYHRYQVTLDHVYDIQIAHALLQKKKEGNVPIRRFGLAELTDLYAPKPY 261 Query: 127 LGINISKAQQSSD--------WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 I+ + D W L + Y A DV+ L + T +L Sbjct: 262 AQQAINVKHKGRDLFKNNLDIWRQRPLPPTIIDYCALDVIVLLPIYNILTPQL 314 >gi|33589402|gb|AAQ22468.1| RE33408p [Drosophila melanogaster] Length = 1004 Score = 94.3 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 24/209 (11%) Query: 6 VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V DI + AA+ +++D E + L + + ++++ G + + + Sbjct: 540 VFVTDIILKYAAKNESIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 598 Query: 65 N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116 + L +L ++ K+ H R D A L+ FG+ +R VF T+ A + + + Sbjct: 599 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 658 Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163 L ++ + + K D W+ L+ E + YAA DV+ L L Sbjct: 659 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 717 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +++ R+ + C ++ + + Sbjct: 718 FGNLARQIKPENRALFSELCTEQILMQIK 746 >gi|195586140|ref|XP_002082836.1| GD25020 [Drosophila simulans] gi|194194845|gb|EDX08421.1| GD25020 [Drosophila simulans] Length = 860 Score = 94.3 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 24/209 (11%) Query: 6 VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V DI + AA+ +++D E + L + + ++++ G + + + Sbjct: 538 VFVTDIILKYAAKNESIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 596 Query: 65 N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116 + L +L ++ K+ H R D A L+ FG+ +R VF T+ A + + + Sbjct: 597 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 656 Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163 L ++ + + K D W+ L+ E + YAA DV+ L L Sbjct: 657 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 715 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +++ R+ + C ++ + + Sbjct: 716 FGNLARQIKPENRALFSELCTEQILMQIK 744 >gi|194885564|ref|XP_001976457.1| GG20003 [Drosophila erecta] gi|190659644|gb|EDV56857.1| GG20003 [Drosophila erecta] Length = 824 Score = 94.3 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 84/209 (40%), Gaps = 24/209 (11%) Query: 6 VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V DI + AA+ + +++D E + L + + ++++ G + + + Sbjct: 543 VFVTDIILKYAAKNENIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 601 Query: 65 N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116 + L +L ++ K+ H R D A L+ FG+ +R VF T+ A + + + Sbjct: 602 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 661 Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163 L ++ + + K D W+ L+ E + YAA DV+ L L Sbjct: 662 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 720 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +++ R+ + C ++ + + Sbjct: 721 FGNLARQIKPENRALFSELCTEQILMQIK 749 >gi|91084227|ref|XP_969046.1| PREDICTED: similar to egalitarian CG4051-PA [Tribolium castaneum] gi|270009271|gb|EFA05719.1| egalitarian [Tribolium castaneum] Length = 812 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 22/182 (12%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR-IAAGQKNAPNLVGMLVDEKREKIFH 80 + +D E + L + +L ++Q++ G + I L +L + KI H Sbjct: 416 VVGLDCEGINLGV-KGQLTLLQIATMSGFSYVFDLITCPGMIDSGLKKLLESSQIVKIVH 474 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKELLGINIS 132 R D LF F + + +F T+ A + L + G I+ Sbjct: 475 DCRNDSVNLFNQFNITLNTIFDTQAAHAVLTFQETGRPVYKAKSVALNALCEHY-GAPIN 533 Query: 133 ------KAQQSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLGRSDLAT 181 K D WS L+ E + YA++DV+ L + ++ ++ R Sbjct: 534 PMKDQLKNIYRRDQKYWSRRPLTREMILYASADVLSLVNEKIYYPMSKAIKMENRQLFLE 593 Query: 182 SC 183 C Sbjct: 594 LC 595 >gi|38681451|gb|AAB49975.2| egalitarian [Drosophila melanogaster] Length = 993 Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 24/209 (11%) Query: 6 VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V DI + AA+ +++D E + L + + ++++ G + + + Sbjct: 529 VFVTDIILKYAAKNESIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 587 Query: 65 N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116 + L +L ++ K+ H R D A L+ FG+ +R VF T+ A + + + Sbjct: 588 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 647 Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163 L ++ + + K D W+ L+ E + YAA DV+ L L Sbjct: 648 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 706 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +++ R+ + C ++ + + Sbjct: 707 FGNLARQIKPENRALFSELCTEQILMQIK 735 >gi|194755160|ref|XP_001959860.1| GF11823 [Drosophila ananassae] gi|190621158|gb|EDV36682.1| GF11823 [Drosophila ananassae] Length = 1018 Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 23/176 (13%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79 +++D E + L + + ++++ G + + + + L +L E+ K+ Sbjct: 571 VVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMITDGGLKTVLEHEQVIKVI 629 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLKEL----- 126 H R D A L+ FG+ +R VF T+ A + + + L ++ Sbjct: 630 HDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISLNSLCEQYNAPCN 689 Query: 127 -LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + + K D W+ L+ E + YAA DV+ L + Q L R + + Sbjct: 690 PIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVL--IHDQLFGNLARQIKPE 742 >gi|68074103|ref|XP_678966.1| exonuclease [Plasmodium berghei strain ANKA] gi|56499594|emb|CAI04586.1| exonuclease, putative [Plasmodium berghei] Length = 406 Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 73/203 (35%), Gaps = 32/203 (15%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPG--------DGTVDIIRIAAGQKNAPNLVGMLVD 72 D IAVD E L ++C++Q+ + + N+ + ++ + Sbjct: 103 DIIAVDFEGTNLGRY-GKICLMQIYTEIEKKDKVFEKYYIFDLLNKSVINS--VKKIIEN 159 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-----RTYTNQHGLKDNLKELL 127 +K K+ H R D + L+ ++ V+ T A L Q + L + L Sbjct: 160 KKTLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLLLEKKKENDIYQISFLNLLHDYL 219 Query: 128 GINIS-----KAQQSSD---WSADDLSDEQLQYAASDVVHLHALR---LQFTEKLQRLGR 176 G K + + W LS + YA +V +L + + K + L + Sbjct: 220 GFKDDCLNNIKKEMYKNERIWEIRPLSKISIIYALKNVKYLLPIYKIFDKLISKKEVLEK 279 Query: 177 S-DLATSCCNFLMDRAEL--DLL 196 S D C L R +L DL Sbjct: 280 SKDFVNYCF--LNSRYKLPVDLA 300 >gi|195347186|ref|XP_002040135.1| GM15515 [Drosophila sechellia] gi|194135484|gb|EDW57000.1| GM15515 [Drosophila sechellia] Length = 1035 Score = 93.9 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 24/209 (11%) Query: 6 VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V DI + AA+ +++D E + L + + ++++ G + + + Sbjct: 608 VFVTDIILKYAAKNESIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 666 Query: 65 N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116 + L +L ++ K+ H R D A L+ FG+ +R VF T+ A + + + Sbjct: 667 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 726 Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163 L ++ + + K D W+ L+ E + YAA DV+ L L Sbjct: 727 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 785 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +++ R+ + C ++ + + Sbjct: 786 FGNLARQIKPENRALFSELCTEQILMQIK 814 >gi|195489284|ref|XP_002092670.1| GE11539 [Drosophila yakuba] gi|194178771|gb|EDW92382.1| GE11539 [Drosophila yakuba] Length = 1009 Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 84/209 (40%), Gaps = 24/209 (11%) Query: 6 VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V DI + AA+ + +++D E + L + + ++++ G + + + Sbjct: 545 VFVTDIILKYAAKNENIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 603 Query: 65 N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116 + L +L ++ K+ H R D A L+ FG+ +R VF T+ A + + + Sbjct: 604 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQSAHAILQYQESGKQVYKA 663 Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163 L ++ + + K D W+ L+ E + YAA DV+ L L Sbjct: 664 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 722 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +++ R+ + C ++ + + Sbjct: 723 FGNLARQIKPENRALFSELCTEQILMQIK 751 >gi|325842732|ref|ZP_08167767.1| 3'-5' exonuclease [Turicibacter sp. HGF1] gi|325489532|gb|EGC91897.1| 3'-5' exonuclease [Turicibacter sp. HGF1] Length = 232 Score = 93.5 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 63/179 (35%), Gaps = 8/179 (4%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 Y I VD ET GL D + ++ + D ++ + +L D K+ Sbjct: 61 YSKIIGVDIETTGLDFLEDSIRLIAVYSED-------FEYVGEDLEAVKTLLTDPSVLKV 113 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 FH+ +FD+ G+ V T I +++ L K LG ++ K+ Q + Sbjct: 114 FHHSQFDV-CFLKKAGIDVCTFTDTFIMNQILNNLPVFDSLSRLAKVYLGKSLDKSLQHA 172 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 D DL+ E Y D + L + + L EL L G Sbjct: 173 DNWQSDLTQEHYAYCLDDAKTTYELYQHMFDLIINRYLYPRYRREIETLPAIVELTLNG 231 >gi|326513036|dbj|BAK03425.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 490 Score = 92.4 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 34/168 (20%) Query: 37 DRLCIVQLS----PGDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKI-FHYGRFDI--- 86 + ++QL+ G V ++ + L + K+ F + + D+ Sbjct: 69 PTVTVLQLACRGEDGGNEVFVVDLLAVPLADLWAPLRELFERPDVLKLGFRF-KQDLVYL 127 Query: 87 -AVLFYTFGVR-----------VRPVF------CTKIASRLTRTYTNQHGLKDNLKELLG 128 A G V V+ T+ TR L +ELL Sbjct: 128 SATFTAALGCDSGFNRVEPFLDVTNVYYYLKGHDTQ-----TRLPKETKSLASICEELLN 182 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +++SK Q SDWS LS+ Q+QYAASD +L + F +K+ + Sbjct: 183 VSLSKELQCSDWSCRPLSEGQIQYAASDAYYLLYIFDLFHQKVSIEEK 230 >gi|328780055|ref|XP_623215.2| PREDICTED: hypothetical protein LOC550822 isoform 1 [Apis mellifera] Length = 664 Score = 91.6 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 20/172 (11%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKIF 79 ++ D E + L + +L +VQ+ G + + A L +L + K+ Sbjct: 251 VVSFDCEGINLGV-KGQLTLVQIGTMSGQAYVFDLFACPNLVQAGGLQKLLEHKDVIKVI 309 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL----- 126 H R D L+ F + + VF T+ A + + L Sbjct: 310 HDCRNDSVNLYRQFKIMLNNVFDTQAAHAVLQFQETGKPVYKVKNVNLNTLCDHYGAPSN 369 Query: 127 -LGINISKAQQS--SDWSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRL 174 L + ++ W L+ + L YA+SDV+ L + + + ++ Sbjct: 370 PLKEQLKNIYRNNQRYWCRRPLTRDMLIYASSDVLSLVPQIYISMSRLIKPE 421 >gi|221053416|ref|XP_002258082.1| exonuclease [Plasmodium knowlesi strain H] gi|193807915|emb|CAQ38619.1| exonuclease, putative [Plasmodium knowlesi strain H] Length = 414 Score = 91.6 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 71/204 (34%), Gaps = 33/204 (16%) Query: 2 TTIRVHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLSPGDGT-------- 50 I++ E + AA + D IAVD E L ++CI+Q+ + T Sbjct: 81 KDIKIVENEKEGNDAAEEINRNDIIAVDFEGTNLGKY-GKVCIMQVYTEERTPGGVHPKS 139 Query: 51 -------VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 I + ++ ++K K+ H R D + L+ G++ V+ T Sbjct: 140 ECLSREKYYIFDLLKMSVIKSV-KKIIENKKTLKLVHDCREDSSALYNQLGIKFENVYDT 198 Query: 104 KIASRLT-----RTYTNQHGLKDNLKELLGINIS-----KAQQSSD---WSADDLSDEQL 150 A L + Q L + LGI K + + W LS + Sbjct: 199 SRAHMLLMEKNRNSDIYQVSFLQLLNDYLGIKDDCLSSIKKEMYKNEKIWEVRPLSKMSI 258 Query: 151 QYAASDVVHLHALRLQFTEKLQRL 174 YA +V +L L F L + Sbjct: 259 IYALKNVKYLFPLYRIFDNMLSKK 282 >gi|307176637|gb|EFN66105.1| Probable exonuclease mut-7-like protein [Camponotus floridanus] Length = 1053 Score = 91.2 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 27/189 (14%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 R+ E + + V + +D E ++ L ++Q++ D V I+ + Sbjct: 387 RLFEEFLDNGL--KNVTIVGIDLEWKPSFGTKQPELALIQIATED-NVYILDVTTLGNEL 443 Query: 64 PNLV-----GMLVDEKREKIFHYGRFDIAVLFYTFGVRV------RPVFCTKIA-SRLTR 111 P L + ++ KI DI V+ + + I +LT Sbjct: 444 PELWVELGLTLFGNKNIVKIGFGIAHDITVIRNSIPALSSIKNHGQGYLDLMILWRKLTE 503 Query: 112 TY-----------TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 Y L ++ G + K+ Q S+W L + Q+ YAA D L Sbjct: 504 DYNFIFPYKGDPNFTSKSLSKLVELCFGQRLDKSDQFSNWELRPLRESQIIYAALDAYCL 563 Query: 161 HALRLQFTE 169 + + Sbjct: 564 LEIYKVLAD 572 >gi|221053221|ref|XP_002257985.1| 3'-5' exonuclease [Plasmodium knowlesi strain H] gi|193807817|emb|CAQ38522.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H] Length = 384 Score = 91.2 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 18/176 (10%) Query: 23 IAVDTETLGLMPRR-DRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 I +D E G R + +VQ+ D D+ + L +L D + KI H Sbjct: 78 IGLDVE--GYKIGRNGTVSLVQICAQDVYLFDVYKCDNTFLFIKCLKELLEDGRIVKITH 135 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT----NQHGLKDNLKELL------GIN 130 R D ++LF + + + +F T++A L T Q D L + L I Sbjct: 136 DCREDCSILFNQYSISLNNIFDTQVAYNLLSKETKKDLYQISYDDLLYKCLLLHNKHKIY 195 Query: 131 ISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 K D + + E + YA DV++L L L ++L R+ + A S Sbjct: 196 FHKMISL-DQKIYLKRPIGKELIHYAIQDVIYLKPLMLNLVDRLLRVCKDGEARSE 250 >gi|313205201|ref|YP_004043858.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4] gi|312444517|gb|ADQ80873.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4] Length = 231 Score = 90.8 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 10/176 (5%) Query: 12 PAECAARYVDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 PA R + +DTET R ++ +VQ+S D + R+ A L Sbjct: 34 PAIAELRKSKVVGIDTETKPSFTRGTYHKVSLVQISTLDHCF-LFRLNKIDFPA-ALAEF 91 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLG 128 L DE +KI R D+ L + + + ++Y + GL+ L G Sbjct: 92 LSDENIKKIGLSLRDDLNGLNKHHAFKPANCVDIQ---TIVQSYGILELGLQKIYAILFG 148 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF--TEKLQRLGRSDLATS 182 ISK+Q+ ++W +L+++Q +YAA+D + LQ +KL + + Sbjct: 149 KKISKSQRLTNWENPELTEQQQRYAATDAWASLQIYLQLMSEKKLTKKQIDKILQQ 204 >gi|125558189|gb|EAZ03725.1| hypothetical protein OsI_25856 [Oryza sativa Indica Group] Length = 501 Score = 90.4 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 19/143 (13%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKI-FHYGRFDIAVLFYTFGV---------RVRPV 100 VD++ + + P L + + K+ F + + D+ L TF RV P Sbjct: 100 VDLLAVPLAELREP-LRELFERPEVLKLGFRF-KQDLVYLSATFAAALGSSAGFERVEPF 157 Query: 101 FCTKIASRLTRTYTNQH-------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 A + + Q L +ELLG+ +SK Q SDWS LS+ Q+QYA Sbjct: 158 LDVTNAYYYLKGHDMQKRLPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYA 217 Query: 154 ASDVVHLHALRLQFTEKLQRLGR 176 ASD +L + F +K++ G+ Sbjct: 218 ASDAYYLLDIFDLFHQKIRTEGK 240 >gi|115471903|ref|NP_001059550.1| Os07g0452400 [Oryza sativa Japonica Group] gi|113611086|dbj|BAF21464.1| Os07g0452400 [Oryza sativa Japonica Group] Length = 501 Score = 90.4 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 19/143 (13%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKI-FHYGRFDIAVLFYTFGV---------RVRPV 100 VD++ + + P L + + K+ F + + D+ L TF RV P Sbjct: 100 VDLLAVPLAELREP-LRELFERPEVLKLGFRF-KQDLVYLSATFAAALGSSAGFERVEPF 157 Query: 101 FCTKIASRLTRTYTNQH-------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 A + + Q L +ELLG+ +SK Q SDWS LS+ Q+QYA Sbjct: 158 LDVTNAYYYLKGHDMQKRLPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYA 217 Query: 154 ASDVVHLHALRLQFTEKLQRLGR 176 ASD +L + F +K++ G+ Sbjct: 218 ASDAYYLLDIFDLFHQKIRTEGK 240 >gi|303272145|ref|XP_003055434.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463408|gb|EEH60686.1| predicted protein [Micromonas pusilla CCMP1545] Length = 590 Score = 90.4 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 24/172 (13%) Query: 16 AARYVDAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-------LV 67 A + + +D E P R + I+Q++ + A +AP L Sbjct: 118 AEGHPPVVGLDGE---WKPGSRTPVSILQVATRADAFVVDLFATAPPDAPASDALDAFLA 174 Query: 68 GMLVDEKREKIFHYGRFDI----------AVLFYTFG-VRVRPVFCTKIASRLTRTYT-- 114 +L E+ K+ +D+ L G + R + K + + Sbjct: 175 DLLGSERIYKLGFSFGYDLSRMRASYPHLRSLRVGAGHPQPRAMIDVKQVANVASANRMN 234 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 + GL K LG +SKA+Q SDWS L+ QL YAA+D +L + + Sbjct: 235 TRVGLATLTKFTLGATLSKAEQCSDWSRRPLTAAQLSYAAADAFYLCVIFDK 286 >gi|326435716|gb|EGD81286.1| hypothetical protein PTSG_11323 [Salpingoeca sp. ATCC 50818] Length = 1526 Score = 90.4 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 7/142 (4%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLV-GMLVDEKREKIFHYGRFDIAVLFYTFG-- 94 R+ I+Q++ D V + +A + V + D K+ D+ +L TF Sbjct: 654 RVSILQIARHDALVILDMLALEPAHFHAFVTDLFADPAIIKVGFAFDGDMKMLRKTFPDA 713 Query: 95 ---VRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL 150 +R + + LT GLK+ ++ + + K +Q S+W+ L+ QL Sbjct: 714 ECFSTLRSLLDLQSFRHALTSAGPKSGGLKELVRHFMHKPLDKTEQMSNWNRRPLTPSQL 773 Query: 151 QYAASDVVHLHALRLQFTEKLQ 172 YAA D +L + + L Sbjct: 774 HYAALDAHVCVSLAERMLQALA 795 >gi|117924196|ref|YP_864813.1| 3'-5' exonuclease [Magnetococcus sp. MC-1] gi|117607952|gb|ABK43407.1| 3'-5' exonuclease [Magnetococcus sp. MC-1] Length = 238 Score = 90.4 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 62/162 (38%), Gaps = 9/162 (5%) Query: 11 IPAECAA-RYVDAIAVDTET---LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 +PA AA R + DTET D ++QL+ G+ V + +I Q + P L Sbjct: 41 LPAAIAALRQERVLGFDTETRPSFRKGTSYDPT-LIQLA-GEKVVYLFQINLLQDHRP-L 97 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ DI L F + +R GL+ Sbjct: 98 AELLADTSIHKVGVGLSQDIRQLQAIFSFKPGGFVDVGETAR--HNNIATRGLRSMAAAF 155 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + ISK Q S+W+ + L Q+ YAA+D L + Sbjct: 156 FHVRISKRAQCSNWAQEALQPFQIIYAATDAWISRELYVALA 197 >gi|34394896|dbj|BAC84412.1| unknown protein [Oryza sativa Japonica Group] Length = 501 Score = 90.1 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 19/143 (13%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKI-FHYGRFDIAVLFYTFGV---------RVRPV 100 VD++ + + P L + + K+ F + + D+ L TF RV P Sbjct: 100 VDLLAVPLAELREP-LRELFERPEVLKLGFRF-KQDLVYLSATFAAALGSSAGFERVEPF 157 Query: 101 FCTKIASRLTRTYTNQH-------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 A + + Q L +ELLG+ +SK Q SDWS LS+ Q+QYA Sbjct: 158 LDVTNAYYYLKGHDMQKRLPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYA 217 Query: 154 ASDVVHLHALRLQFTEKLQRLGR 176 ASD +L + F +K++ G+ Sbjct: 218 ASDAYYLLDIFDLFHQKIRTEGK 240 >gi|157133260|ref|XP_001656205.1| 3-5 exonuclease [Aedes aegypti] gi|108870910|gb|EAT35135.1| 3-5 exonuclease [Aedes aegypti] Length = 771 Score = 89.7 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 3/155 (1%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R + D E + +R + ++QL+ G +IR+ ++ P L +L D K Sbjct: 67 REFRVLGFDCEWVNEQGKRHPVALLQLATHRGLCALIRLCEMKRIPPELGELLNDPAIVK 126 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135 + D +L + + ++V + + +G+ ++ LG+ + K Sbjct: 127 VGVGPLEDAKLLRHDYNLKVESTLDLRHLADRCGVPGP-YGMAKLAEKTLGVKLDKHWRI 185 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 ++S+W L++ Q+QYAASD L F +K Sbjct: 186 RASNWENAQLTERQIQYAASDAHVAVELFRTFAKK 220 >gi|170048985|ref|XP_001853674.1| 3'-5' exonuclease [Culex quinquefasciatus] gi|167870951|gb|EDS34334.1| 3'-5' exonuclease [Culex quinquefasciatus] Length = 755 Score = 89.7 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 11/181 (6%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R + D E + +R + ++QL+ G +IR+ ++ P L +L D K Sbjct: 68 RDYRILGFDCEWVTEKGKRHPVALLQLASHQGLCALIRLCQMKRIPPELGELLNDPGILK 127 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135 + D +L + ++V + + R +G+ ++ LG+ + K Sbjct: 128 VGIGAIEDAQLLRSDYNLKVESALDLRHLAERCRVPGP-YGMARLAEKSLGLQLDKHWRV 186 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG----RSDLATSCCNFLMDRA 191 ++SDW A +LS+ QL+YAA+D L + +++ R G R + LM Sbjct: 187 RASDWEALELSERQLKYAANDAHVAVELFRLYADRVLRCGIFTTRKKW----FDSLMTEI 242 Query: 192 E 192 E Sbjct: 243 E 243 >gi|303325512|ref|ZP_07355955.1| 3'- 5' exonuclease domain protein [Desulfovibrio sp. 3_1_syn3] gi|302863428|gb|EFL86359.1| 3'- 5' exonuclease domain protein [Desulfovibrio sp. 3_1_syn3] Length = 216 Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 8/169 (4%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQ 60 IRV E A R + DTET R+ ++ ++QL+ + V ++++A Sbjct: 26 IRVLEDWKQALPDLRADGVLGFDTET-RPTFRKGKINAPSLIQLAT-ERAVYLVQLA-WL 82 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P+L +L D K R D+ L + A+R GL+ Sbjct: 83 PFGPHLAEILADPNVIKAGVGIRDDMRELSRLHDFEPAGLVDLGNAAR--AHKLPSQGLR 140 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 L G ISK Q S+WS +LS Q+ YAA+D + L+ E Sbjct: 141 TLAANLFGWRISKGSQCSNWSLMELSQRQIAYAATDAWIGRLIFLRMRE 189 >gi|156097777|ref|XP_001614921.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax SaI-1] gi|148803795|gb|EDL45194.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax] Length = 414 Score = 89.3 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 33/204 (16%) Query: 2 TTIRVHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLSPGDGT-------- 50 I++ E + AA + D IAVD E L ++CI+Q+ + T Sbjct: 81 KDIKIVENEKEGNDAAEEINQNDIIAVDFEGTNLGKY-GKVCIMQVYTEERTREGTPPQS 139 Query: 51 -------VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 I + ++ ++K K+ H R D + L+ G++ V+ T Sbjct: 140 ECISREKYYIFDLLKMSVIKSV-KKIIENKKTLKLVHDCREDSSALYNQLGIKFENVYDT 198 Query: 104 KIASRLTRTYT-----NQHGLKDNLKELLGIN---IS--KAQQSSD---WSADDLSDEQL 150 A L Q L + LGI +S K + + W LS + Sbjct: 199 SRAHMLLMEKNKSNDIYQVSFLQLLNDYLGIKDECLSSIKKEMYKNEKIWQVRPLSKMSI 258 Query: 151 QYAASDVVHLHALRLQFTEKLQRL 174 YA +V +L L F L + Sbjct: 259 IYALKNVKYLFPLYRIFDNMLPKK 282 >gi|224135103|ref|XP_002321984.1| predicted protein [Populus trichocarpa] gi|222868980|gb|EEF06111.1| predicted protein [Populus trichocarpa] Length = 491 Score = 89.3 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 32/194 (16%) Query: 16 AARYVDAIAVDTET--LGLMPRRDR---LCIVQL-------SPGDGTVDIIRIAAGQKN- 62 + I +D E + + + ++QL S T + + + Sbjct: 28 SLTRSSIIGLDAEWKPIRGQTHQPTFPTVSLLQLACQLGHDSDESETFLLDLHSVPLPSI 87 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVFC--------TKIASRLTR 111 L V K+ + D+ L TF G F T I ++ Sbjct: 88 WELLRETFVSPDILKLGFKFKQDLVYLSSTFCLQGCDPG--FDKVEPYLDITSIYYQMQH 145 Query: 112 TYTNQHG------LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 + G L KE+LGI++SK Q SDWS L++EQ YAA+D L + Sbjct: 146 KQQGRKGPKETKSLATICKEVLGISLSKELQCSDWSHRPLTEEQKTYAAADAHCLLKIFN 205 Query: 166 QFTEKLQRLGRSDL 179 F + + + G L Sbjct: 206 VFQDNIVKKGSWWL 219 >gi|307172596|gb|EFN63955.1| Exonuclease 3'-5' domain-like-containing protein 1 [Camponotus floridanus] Length = 651 Score = 88.9 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 24/192 (12%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79 ++ D E + L + +L +VQ+ G + + + + L +L K+ Sbjct: 244 VVSFDCEGINLGV-KGQLTLVQIGTMSGQAYMFDLFTCPRLVQDGGLQKLLEHPHVIKVI 302 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL----- 126 H R D L+ F + + VF T+ A + + L Sbjct: 303 HDCRNDSVNLYNQFTITLMNVFDTQAAHAVLQFQETGKPVYKVKNVNLNTLCDHYGAPCN 362 Query: 127 -LGINIS----KAQQSSDWSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDLA 180 L + K Q+ WS ++ + L YA+SDV+ L + + ++ + A Sbjct: 363 PLKEQLKNIYRKDQRY--WSRRPMTRDMLIYASSDVLSLVPQVYNAMSRLIKPEVQGLFA 420 Query: 181 TSCCNFLMDRAE 192 C + Sbjct: 421 ELCEEQIQMHIR 432 >gi|312375236|gb|EFR22650.1| hypothetical protein AND_14417 [Anopheles darlingi] Length = 782 Score = 88.9 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 11/181 (6%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + D E + +R + ++QL+ G +IR+ K L +L D+ K Sbjct: 73 QEYKVLGFDCEWVSNQGQRRPVALLQLASHRGLCALIRLCMINKLPQELYDLLNDDNIIK 132 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135 + D +L + ++V + + R G+ E+LG+ + K Sbjct: 133 VGVSPYEDARLLREDYKLKVESTLDLRFMAE--RAGLEPFGIARLANEVLGLTLDKHWKI 190 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-------QRLGRSDLATSCCNFLM 188 + SDW A DLSD Q++YAASD L +F KL R D + M Sbjct: 191 RCSDWEAPDLSDRQIKYAASDAHVAVELFKKFAYKLVPHYPWTSRKVVLDQVLEEMDCFM 250 Query: 189 D 189 D Sbjct: 251 D 251 >gi|325068901|ref|ZP_08127574.1| ribonuclease D [Actinomyces oris K20] Length = 289 Score = 88.5 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 GL ++E LG+ ++K ++DWS L L YAA DV L LR +L+ G+ Sbjct: 7 VGLGAVIEETLGLRLAKDHAAADWSTRPLPASWLTYAALDVELLIDLRDALATELEAAGK 66 Query: 177 SDLATSCCNFLMDR 190 A + + Sbjct: 67 DQWAAQEFEHVRTK 80 >gi|124512300|ref|XP_001349283.1| exonuclease, putative [Plasmodium falciparum 3D7] gi|23499052|emb|CAD51132.1| exonuclease, putative [Plasmodium falciparum 3D7] Length = 406 Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 26/180 (14%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-----------VDIIRIAAGQKNAPNLV 67 + IA+D E L ++C++Q+ I + Sbjct: 97 RSEIIAIDFEGTNLGRY-GKVCLMQVYVEKKNMNEQSDNILQKYYIFDLLKTSVIKSA-Q 154 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-----RTYTNQHGLKDN 122 ++ ++K K+ H R D + L+ G+++ V+ T A L + Q Sbjct: 155 KIIENKKTLKLIHDCREDSSALYNQLGMKLENVYDTSRAHLLLMEKQKKNDIYQVSFAQL 214 Query: 123 LKELLGIN---IS--KAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + + LGIN +S K + + W LS+ + YA +V +L+ L F + L + Sbjct: 215 INDYLGINDASLSFIKKEMYKNEKIWETRPLSNISIIYALKNVKYLYKLYKIFDKLLPKK 274 >gi|308801591|ref|XP_003078109.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri] gi|116056560|emb|CAL52849.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri] Length = 1313 Score = 88.5 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 38/184 (20%) Query: 21 DAIAVDTE--------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-----LV 67 I +DTE D + I+Q++ G V I+ + + P+ + Sbjct: 379 GMIGIDTEWGADVGEDADNADRSGDEVAILQIASQLG-VVILDVPKLLYSCPDTLETTIG 437 Query: 68 GMLVDEKREKIFHYGRFDIAVLF--YTFGVRVRPVFCTKIA------------------- 106 M DE+ K+ + D+ L + V+ V + Sbjct: 438 KMFEDEEVLKLGFAVQEDLRRLSKCHKAFKTVQGVVDLQKLWKLLVSKARTRSVSAPWST 497 Query: 107 -SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 + L R GL + +LG + K + SDWS L+ Q++YAA D L + Sbjct: 498 EAELLRYQP--VGLSALVAAVLGKPLDKMMRMSDWSRRPLTQSQMEYAALDAWTLVEVHR 555 Query: 166 QFTE 169 E Sbjct: 556 TLLE 559 >gi|118379202|ref|XP_001022768.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89304535|gb|EAS02523.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 645 Score = 88.1 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 6/95 (6%) Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ----QSSDW 140 DI L + + + F + A+ L L++ + K + Q S+W Sbjct: 54 DIVWLQRDYDILISNYFDIQTAAIFLNK-DESWSLTYLLQKYCDYTLEKKEKKQLQLSEW 112 Query: 141 SADDLSDEQLQYAASDVVHLHAL-RLQFTEKLQRL 174 S LS+EQL YAA D L + E ++RL Sbjct: 113 SDRPLSEEQLNYAALDSHFLIKIRYELLHEMIKRL 147 >gi|332030729|gb|EGI70405.1| Putative exonuclease mut-7-like protein [Acromyrmex echinatior] Length = 955 Score = 88.1 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 27/189 (14%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 R+ E + R V+ + +D E ++ L ++Q++ D V I+ + Sbjct: 349 RLFEEFLDNGL--RDVNIVGIDLEWKPSFGTKQPELALMQVATED-NVYILDVTTIGDKL 405 Query: 64 PNLVG-----MLVDEKREKIFHYGRFDIAVLFYTF------GVRVRPVFCTKIA-SRLTR 111 L + ++ KI D+ V+ + + + +L Sbjct: 406 LELWNELGLVLFGNKDIIKIGFGIAQDMTVIRNSLPALSSIKTHGQGYLDLMLLWRKLVE 465 Query: 112 TY-----------TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 Y L ++ G + K+ Q S+W L + Q+ YAA D L Sbjct: 466 EYNFVFPYKGDPNFTNRSLSKLVELCFGQRLDKSDQFSNWELRPLRESQIIYAALDAYCL 525 Query: 161 HALRLQFTE 169 + + Sbjct: 526 LEIYNVLAD 534 >gi|328698648|ref|XP_001946371.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like [Acyrthosiphon pisum] Length = 522 Score = 87.7 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 79/183 (43%), Gaps = 11/183 (6%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 E +A Y+ + +D E + R + ++Q++ +G +IR++ + +L +L + Sbjct: 51 EKSASYLPILGLDCEWVTQNGIRQPVALLQIADNNGMCSLIRLSKFKTIPSSLSDILSNS 110 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+ D +L + + V + ++ + + L +LLG + K Sbjct: 111 NIIKVGVAILDDAHLLMNDYNINVSGCIDLRYLAK--ESCLEERSLSALAFKLLGCELDK 168 Query: 134 AQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 ++SDW A++L+D Q +YAA D + Q K ++ + FL D+ Sbjct: 169 DWHVRASDWEAEELNDRQTEYAALDAYVAVKIFEQLRNK--KISWWNWL-----FLTDKQ 221 Query: 192 ELD 194 + D Sbjct: 222 KWD 224 >gi|320352196|ref|YP_004193535.1| 3'-5' exonuclease [Desulfobulbus propionicus DSM 2032] gi|320120698|gb|ADW16244.1| 3'-5' exonuclease [Desulfobulbus propionicus DSM 2032] Length = 210 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 13/163 (7%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + A +R + DTET P + ++QL+ D V + ++ P Sbjct: 42 LAAAHLSRAA-LLGFDTET---RPAFRKGQKFSPSLLQLAT-DSVVYLFQLQQIGLAQP- 95 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L D K FD+ L +A R + HGL+ Sbjct: 96 LRAILSDPTIIKAGVAPDFDLRSLGELEPFEPDGFVD--LARMARRRGVHNHGLRGLAAL 153 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + G+ ISK+ ++++W+ +L+ +Q++YAA+D + L+ Sbjct: 154 VCGVRISKSARTTNWANAELTPQQIRYAATDAWIGREIYLRLN 196 >gi|82753264|ref|XP_727606.1| ribonuclease D [Plasmodium yoelii yoelii str. 17XNL] gi|23483534|gb|EAA19171.1| Ribonuclease D [Plasmodium yoelii yoelii] Length = 510 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 62/134 (46%), Gaps = 5/134 (3%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 +LC++QL D + I P ++ +L ++K K+ H + D + ++ Sbjct: 180 KLCLIQLCSND-ICFVFNINNLNGEIPLSVKTVLENKKIIKVCHDIKNDQDMFLSK-NIK 237 Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 + VF + + Y L++ +K+ L ++ K + S+W +L++EQ+ YAA+D Sbjct: 238 INNVFD--LYNYSIDNYIYPPSLQNLVKKYLKKHLDKEYRLSNWLCKNLNEEQIMYAAND 295 Query: 157 VVHLHALRLQFTEK 170 + + ++ Sbjct: 296 SYASREVYISLEKQ 309 >gi|296191265|ref|XP_002743563.1| PREDICTED: probable exonuclease mut-7 homolog [Callithrix jacchus] Length = 1009 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 50/207 (24%) Query: 6 VHEGDIP--AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 + D+ + + + VD E + R R ++Q++ + +A Sbjct: 396 TSQEDLARHKDALLQPQQVVGVDLEWTLVFIAG--GRPRPSLLQVATEGCVFLLDILAFT 453 Query: 60 QKNA--------PNLVGMLVDEKREKIFHYGRFDI-------AVLFY-----TFGV---- 95 Q A + +L D K+ + D+ +L + GV Sbjct: 454 QPPAGQGAQAFSQLVAQLLSDPSITKLGYGMAGDLQKLGMSCPILAHVEKQVLGGVDLLL 513 Query: 96 ---------RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLS 146 P + R + GL ++++LG + K QQ S+W L Sbjct: 514 VHRQMRMAGMPTP--------GMARAGGLR-GLSLLVQQVLGTTLDKTQQLSNWDRRPLF 564 Query: 147 DEQLQYAASDVVHLHALRLQFTEKLQR 173 +EQL YAA+D L + + R Sbjct: 565 EEQLIYAAADAYCLLEVHQALCREPAR 591 >gi|308802033|ref|XP_003078330.1| 3'-5' exonuclease, putative (ISS) [Ostreococcus tauri] gi|116056782|emb|CAL53071.1| 3'-5' exonuclease, putative (ISS) [Ostreococcus tauri] Length = 1013 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 21/180 (11%) Query: 13 AECAARYVDAIAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------- 63 A +AR I +D E G + ++Q++ + +A ++A Sbjct: 397 ASTSARAPPCIGLDAEWRPGDNT---PVALLQIATRGEVFLVDLLATAPRSAGEALNDAT 453 Query: 64 -PNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGV---RVRPVFCT-KIA-SRLTRTYT 114 L +L E K+ +DI + + V R + + ++A + + Sbjct: 454 DELLQAVLWSEDVYKLGFSFAYDIKRMKASYSHLKVWSERSKNLVDVKQLAFASSPSKMS 513 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + GL +++ G + K +Q SDW L++ Q+ YAA+D L + + E + Sbjct: 514 LRCGLAVLTRQVTGFTLDKKEQCSDWGKRPLTEGQIAYAAADGHSLCLIFDKCLEMILDE 573 >gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] Length = 897 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 20/170 (11%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-KNAPN------LVGMLVDE 73 A+AVDTET GL P RL V + +G + +AA + P L +LV Sbjct: 327 GAVAVDTETDGLDPLTCRLVGVSFAVDEGRACYVPLAAPDVRPLPADVVREVLSPLLVST 386 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 + K+ +FD VL GVR P F T +A+ L + ++ L ++ LG Sbjct: 387 EVVKVGQNLKFDYHVLRRW-GVRPEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTI 445 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + K +++ + YAA D L E+L+ G Sbjct: 446 HYKDVVEKGASF---ETVPVAEAGV-YAAEDADIALRLSRVLKERLEAEG 491 >gi|68067898|ref|XP_675876.1| DNA binding protein [Plasmodium berghei strain ANKA] gi|56495304|emb|CAH94067.1| DNA binding protein, putative [Plasmodium berghei] Length = 392 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 +LC++QL D + I ++ +L + K K+ H + D +L + + Sbjct: 91 KLCLIQLCSND-ICFVFNINDLNGYPLSVKTILENNKIIKVCHDIKNDQDMLLSK-NIEI 148 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 VF + + Y L++ +K L ++ K + S+W +L+++Q+ YAA+D Sbjct: 149 NNVFD--LYNYSIDNYIYPPSLQNLVKTYLKKHLDKEYRLSNWLCKNLNEKQIIYAANDS 206 Query: 158 VHLHALRLQFTEK 170 + + +K Sbjct: 207 YASREVYIALEKK 219 >gi|242048348|ref|XP_002461920.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor] gi|241925297|gb|EER98441.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor] Length = 505 Score = 87.4 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 40/173 (23%) Query: 36 RDRLCIVQLSP--GDGT---------VDIIRIAAGQKNAPNLVGMLVDEKREKI-FHYGR 83 + ++Q++ GDG+ VD++ + AP L + K+ F + + Sbjct: 78 FPTVTLLQVACRFGDGSEGERSEVFVVDLLSVPLADLWAP-LRELFERPDALKLGFRF-K 135 Query: 84 FDI----AVLFYTFGV-----RVRPVFC-TKIASRLTRTYTNQH-----------GLKDN 122 D+ A G RV P T I Y H L Sbjct: 136 QDLVYLSATFSAALGCDSGFDRVEPFLDVTNI-----YYYLKGHDRQKKLPKETKSLATI 190 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +ELL + +SK Q SDWS LS+ Q+QYAASD +L + F +K+ G Sbjct: 191 CEELLSVFLSKELQCSDWSCRPLSEGQIQYAASDAYYLLGIFDLFQKKITMEG 243 >gi|32564304|ref|NP_871964.1| Cell-death-Related Nuclease family member (crn-3) [Caenorhabditis elegans] gi|26985796|emb|CAD59140.1| C. elegans protein C14A4.4b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 594 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 1/86 (1%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 V AVD E + C++Q+S D I L + + K+F Sbjct: 297 VKEFAVDLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVG-MLNEPFANPRILKVF 355 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKI 105 H D+ L +GV V +F T + Sbjct: 356 HGSDSDVLWLQRDYGVHVVNLFDTYV 381 >gi|242000324|ref|XP_002434805.1| conserved hypothetical protein [Ixodes scapularis] gi|215498135|gb|EEC07629.1| conserved hypothetical protein [Ixodes scapularis] Length = 492 Score = 87.0 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 39/202 (19%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 VH D P AR ++ + V R RL +VQL+ DG + + + + Sbjct: 272 VHMVDTPDGF-ARCIEVLKV----------RGRLSLVQLAVWDGVYVLDILKLSEVLGES 320 Query: 66 LV-----GMLVDEKREKIFHYGRFDIAVLFYTFGV---RVRPVFCTKIASRLTRTYTNQH 117 +L + K+ + D+ +L + R + +H Sbjct: 321 HWRQLYTEILSSDDILKLGYGIVEDLKLLSEVAKCPSAKARNFID---LCSFSEKLRQKH 377 Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 GL + + LLG+ ++K +Q SDW L Q++YAA D L Sbjct: 378 PSLMKPVIPKDREHKGLSELTRTLLGLPLNKDEQCSDWENRPLRSSQMRYAALDAFCLLQ 437 Query: 163 LRLQFTEKLQRL--GRSDLATS 182 + + ++ + +L Sbjct: 438 VYEELFKRAEGEDMNLRELIQE 459 >gi|330843627|ref|XP_003293751.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum] gi|325075888|gb|EGC29725.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum] Length = 368 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 23/177 (12%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPG-DGTVDIIRIAAGQK--NAPNLVGMLVDEK 74 + I +D E + + +R + ++Q+S + +V + + L +L + Sbjct: 161 KKEKQIGLDIEAVEMG-KRGEMSLIQISTPSNASVYLFDVLTLGDIIFKLGLKEVLESKV 219 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT------RTYTNQHGLKDNL----- 123 K+ H R D +L++ + V + V+ +IA + + G + Sbjct: 220 ILKVVHDCRRDSEILYHKYQVLLTHVYDIQIAHAIILKKIDGNLPIRRFGFNELTHIYTS 279 Query: 124 KELLGINIS---KAQQSSD-----WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 KE + K +Q D W+ + L YA D L + T KLQ Sbjct: 280 KEYSKYCVDIKFKTKQLFDEDNKIWAKRPIPKLLLDYACLDAAILLPIYRTITPKLQ 336 >gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] Length = 937 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 65/178 (36%), Gaps = 16/178 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVD 72 A DTET GL P + + +P +G + + A L ++ + Sbjct: 362 LAESKQFAFDTETDGLNPLTASIVVASFAPEEGEAYYLPLPQDFDEACAILQPLDALMRN 421 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + K+ +FD +L P+F T +A L +H L ++ LG Sbjct: 422 SEILKMAQNAKFDQKLLARYGVSSATPLFDTLVAHYLI-APDQRHNLDTLAEQYLGYR-- 478 Query: 133 KAQQSSDWS-------ADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 SD S D+++E L YAA D + L EKL++ + L Sbjct: 479 -TIAYSDLSEKKNFDLRRDVAEELLVDYAAEDADVVRRLYPLLREKLEQEQQEKLFWE 535 >gi|158301896|ref|XP_321572.4| AGAP001549-PA [Anopheles gambiae str. PEST] gi|157012692|gb|EAA01810.4| AGAP001549-PA [Anopheles gambiae str. PEST] Length = 769 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 21/186 (11%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + + + D E + +R + ++QL+ G +IR+ + L +L D+ K Sbjct: 72 QEYNVLGFDCEWVSNQGKRRPVALLQLASHRGLCALIRLCMINRIPQELYDLLNDDNIIK 131 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL-----KDNLKELLGINIS 132 + D VL + ++V R + GL E+LG+ + Sbjct: 132 VGVSPYEDARVLREDYRLKVESTLD-------LRYMAERAGLEPLGIARLANEVLGLTLD 184 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-------QRLGRSDLATSC 183 K + SDW + +LSD Q++YAASD + + + KL R + Sbjct: 185 KHWKVRCSDWESPELSDRQIKYAASDAHVAVEMFKKLSYKLVPHYPWTSRKVVLEQVLEE 244 Query: 184 CNFLMD 189 + MD Sbjct: 245 MDCFMD 250 >gi|255549190|ref|XP_002515649.1| 3-5 exonuclease, putative [Ricinus communis] gi|223545192|gb|EEF46701.1| 3-5 exonuclease, putative [Ricinus communis] Length = 523 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 34/192 (17%) Query: 16 AARYVDAIAVDTET--LGLM--PRRDRLCIVQLS----------PGDGTVDIIRIAAGQK 61 + I +D E + + ++QL+ + V ++ ++ + Sbjct: 28 SLTRSSIIGLDAEWKPVRGHQSTF-PTVALLQLACQLRPQFGSDSAESLVFLLDLSLIRL 86 Query: 62 N--APNLVGMLVDEKREKI-FHYGRFDIAVLFYTF---GVRV-----RPVFC-TKIASRL 109 + L + K+ F + + D+ L TF G P T I L Sbjct: 87 SSIWKLLKEVFASPDILKLGFRF-KQDLVYLSSTFCSQGCDPGFHKVEPYLDITSIYHFL 145 Query: 110 TRTYTNQH------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + L E+LGI++SK Q SDWS L++EQ YAA D L + Sbjct: 146 QHKQRGRKIPKETKSLATICNEVLGISLSKELQCSDWSHRPLTEEQKAYAAIDAHCLLEI 205 Query: 164 RLQFTEKLQRLG 175 F + + G Sbjct: 206 FNVFRANVSKEG 217 >gi|118361377|ref|XP_001013917.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89295684|gb|EAR93672.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 1490 Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 14/161 (8%) Query: 23 IAVDTETLGLMPRRDR-----LCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEKR 75 I D+E + PR ++ + +QL+ + D I++ ++ + + +E Sbjct: 1129 IGFDSEFI---PRWNKFEKGGIATLQLATNNKIFIFDTIKLLENEQFLDFVTYLFENENI 1185 Query: 76 EKIFHYGRFDIAVLFYTFG----VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 KI H DI + TF ++++ I + N LK ++L I Sbjct: 1186 LKIGHSIWQDINEMDKTFKAKKEMKIKSFQDVGIIYKEALNLENVSSLKQMCYQILKQKI 1245 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 SK +Q SDWS L Q+ YAA D + L Q ++ Sbjct: 1246 SKYEQISDWSKRPLRKCQIHYAALDALLPLMLYEQINLMIE 1286 Score = 77.7 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 12/167 (7%) Query: 20 VDAIAVDTETLGLMPRRDR--LCIVQLSPGD--GTVDIIRIAAGQKNAPNL---VGMLVD 72 + D+E + ++ + I+QL+ + D + + + + + Sbjct: 396 SKIVGFDSEFASQWNKFEKGGVSIIQLAVQNKIYIFDALNLLVNKFSQEFFNFCKTLFES 455 Query: 73 EKREKIFHYGRFDI----AVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++ K H D+ + + +R + N LK +++LL Sbjct: 456 KQIIKAGHSISTDLNEMEKTFKSEKKFDLNNFVDIALLNRDIFSLANTASLKFMVQKLLN 515 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + +SK +Q S+W L Q+ YAA D + L + ++Q+ G Sbjct: 516 LQMSKFEQISNWDRRPLRKSQIHYAAVDAFIVIKLYEKLV-QIQQAG 561 >gi|46579495|ref|YP_010303.1| 3' exoribonuclease family protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602955|ref|YP_967355.1| 3'-5' exonuclease [Desulfovibrio vulgaris DP4] gi|46448909|gb|AAS95562.1| 3'- 5' exonuclease domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563184|gb|ABM28928.1| 3'-5' exonuclease [Desulfovibrio vulgaris DP4] Length = 202 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 8/168 (4%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQ 60 +R E A R + DTET R+ ++ +VQL+ D V +I++ Sbjct: 33 VRTEEELADALDVLRSDSVLGFDTET-RPTFRKGKVNLPSLVQLACAD-VVYLIQL-NWV 89 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L +L D K R DI L + R V +R HGL+ Sbjct: 90 PLGEMLADLLSDPAIIKTGVAVRDDIRDLQKLYAFRDGGVVDLGEVAR--DLGLETHGLR 147 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + LGI ISK Q S+WS +L +Q+ YAA+D + + Sbjct: 148 NLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATDAWVSREIHISMR 195 >gi|311233310|gb|ADP86164.1| 3'-5' exonuclease [Desulfovibrio vulgaris RCH1] Length = 201 Score = 86.2 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 8/168 (4%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQ 60 +R E A R + DTET R+ ++ +VQL+ D V +I++ Sbjct: 32 VRTEEELADALDVLRSDSVLGFDTET-RPTFRKGKVNLPSLVQLACAD-VVYLIQL-NWV 88 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L +L D K R DI L + R V +R HGL+ Sbjct: 89 PLGEMLADLLSDPAIIKTGVAVRDDIRDLQKLYAFRDGGVVDLGEVAR--DLGLETHGLR 146 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + LGI ISK Q S+WS +L +Q+ YAA+D + + Sbjct: 147 NLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATDAWVSREIHISMR 194 >gi|145345029|ref|XP_001417026.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577252|gb|ABO95319.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 497 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 70/176 (39%), Gaps = 23/176 (13%) Query: 18 RYVDAIAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA---------PNLV 67 R + +D E G + ++Q++ + I +A ++A L Sbjct: 97 RTPPCLGLDAEWRPGDNT---PVALLQIATREEVFLIDLLATAPRSAGESLNVATDELLK 153 Query: 68 GMLVDEKREKI-FHYGRFDIAVLFYTFGVRV------RPVFCT-KIA-SRLTRTYTNQHG 118 +L E K+ F + +D+ + ++ R + ++A + + + G Sbjct: 154 AVLWSEGVYKLGFSFA-YDVKRMKASYSHLSVWEEKSRNLVDVKQLAYAAMPNKTPLRCG 212 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L ++++G + K +Q SDW L++ Q+ YAA+D L + + ++ Sbjct: 213 LAVLTRQVIGCLLDKKEQCSDWGKRPLTESQMAYAAADGYSLCLIFDKCLTMIEDE 268 >gi|325180763|emb|CCA15173.1| LETM1 and EFhand domaincontaining protein 1 putative [Albugo laibachii Nc14] Length = 1136 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 72/165 (43%), Gaps = 14/165 (8%) Query: 3 TIRVHEGDIPAECAA---RYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIR 55 I V DI + A + V + +DTE + ++Q+S D TV + R Sbjct: 129 DINVIHSDIEEDAFASVLQNVKIVGIDTECRPRFDSNKANNP-VSLIQISTID-TVYLYR 186 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTK-IASRLTRTY 113 I Q P L +L K+ H R D L + RV T IA RL Sbjct: 187 IKRQQPLPPLLGHLLASPHVIKVGHSLRDDCKSLRESKLVERVSSTLDTLPIAKRL---G 243 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 ++ GLK + L N+SK Q SDW + DLS +Q+QYAA+D Sbjct: 244 CSRPGLKTLCQIFLDHNLSKKMQLSDWESPDLSVKQIQYAATDAW 288 >gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] Length = 920 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 19/190 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREKI 78 +++DTET L L + + + + + A +K A + E K+ Sbjct: 350 VSIDTETTSLYAMDAELVGLSFAVEERQAFYVPVPADRKEAEKIVNIFKPLYESEAIMKV 409 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS--- 132 ++D+ VL +F T IA L + +H + + L I+I Sbjct: 410 GQNMKYDLEVLRNYGVCLRGALFDTMIAHYLIQPEL-RHNMDYMAEVYLNYQTIHIDTLI 468 Query: 133 --KA-QQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFL 187 K Q S +LS Q+ +YAA D L+ KL+ + +L + Sbjct: 469 GAKGKHQKS---MRELSPAQVYEYAAEDADITLQLKNVLEPKLREVEAEELFYQIEMPLV 525 Query: 188 MDRAELDLLG 197 AE+++ G Sbjct: 526 PVLAEMEMNG 535 >gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] Length = 948 Score = 85.8 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 22/170 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCI----VQLSPGDGTVDIIRIAAGQKNA----PNLVG 68 +A DTET GL D LC + L + I + + A L Sbjct: 353 LAGSSVVAFDTETDGL----DALCAGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLKD 408 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++ DE+ K+ H +FD+ VL P++ T +A L H L + LL Sbjct: 409 LMQDERVLKVAHNAKFDLEVLTRYGLPEAHPLYDTMLAHYLIDA-DQGHSLDELAGGLLR 467 Query: 129 ------INISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171 +++ + + D+ + L YA+ D L ++L Sbjct: 468 YDTIRYKDLAPQESFA--LRTDVDPKLLCDYASEDAYVTLRLYHALHKQL 515 >gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] Length = 948 Score = 85.4 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 22/170 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCI----VQLSPGDGTVDIIRIAAGQKNA----PNLVG 68 + +A DTET GL D LC + L + I + + A L Sbjct: 353 LAGISVVAFDTETDGL----DALCAGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLKD 408 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++ DE+ K+ H +FD+ VL P++ T +A L H L + LL Sbjct: 409 LMQDERVLKVAHNAKFDLEVLTRYGLPEAHPLYDTMLAHYLIDA-DQGHSLDELAGGLLR 467 Query: 129 ------INISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171 +++ + + D+ + L YA+ D L ++L Sbjct: 468 YDTIRYKDLAPQESFA--LRTDVDPKLLCDYASEDAYVTLRLYHALHKQL 515 >gi|194226096|ref|XP_001492084.2| PREDICTED: similar to MUTator family member (mut-7) [Equus caballus] Length = 870 Score = 85.4 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 25/174 (14%) Query: 19 YVDAIAVDTE-TLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKN---APNLVGMLVDE 73 V + VD E R ++ ++Q++ + + Q + + ++ +L D Sbjct: 401 QVGLVGVDLEWRPSFGTGGRPQVSLMQVAVEGHVFLLDLLVLSQTSQAFSQLVLRLLSDP 460 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVR------------------PVFCTKIASRLTRTYTN 115 K+ + D+ L + V A + T Sbjct: 461 SITKLGYGMAGDLRSLGASCPALAHVEKQLRGSLDLQQVHRQMRVVD-MPAPSVDGTKGP 519 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + GL ++++LG + K QQ S+W LS+ QL YAA+D L + Sbjct: 520 R-GLSLLVQQVLGKPLDKRQQLSNWDRRPLSEAQLVYAATDAYCLLEVYRVLCR 572 >gi|157110292|ref|XP_001651037.1| hypothetical protein AaeL_AAEL005527 [Aedes aegypti] gi|122068562|sp|Q179T2|MUT7_AEDAE RecName: Full=Probable exonuclease mut-7 homolog; AltName: Full=Exonuclease 3'-5' domain-containing protein 3 homolog gi|108878761|gb|EAT42986.1| conserved hypothetical protein [Aedes aegypti] Length = 719 Score = 85.4 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 26/183 (14%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 + C IA D+E + + ++QL+ D V +I + Q + + Sbjct: 450 LSDLC---RQSMIAFDSEWKPTFGGANEVSLIQLATWDD-VYMIDVMVSQLEPLDWAALA 505 Query: 71 VD----EKREKIFHYGRFDIAVLFYT---FGVR-----VRPVFCTKIA----SRLTRTYT 114 + + K+ DI++ F V + ++ R Sbjct: 506 KNVFNRDDVLKLSFAPSTDISMFQKALPSFNVMYSSQSTSAILDLQLLWRHVERFDSFRF 565 Query: 115 NQH------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 H L + ++ LG + K+ Q S+W+ L EQL+YAA D L + Sbjct: 566 PYHEESVNQNLANLVRLCLGKKLDKSNQFSNWAQRPLRKEQLRYAALDAFCLLEIYDAIE 625 Query: 169 EKL 171 ++L Sbjct: 626 KQL 628 >gi|156555728|ref|XP_001601894.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 929 Score = 85.4 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 39/193 (20%) Query: 14 ECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---- 68 + A R V+ + +D+E R+ L ++Q++ + V I+ + +L Sbjct: 407 DHALRNVNVVGIDSEWKPSFSIRKPELALIQIAT-ETNVYILDVTTLGNKVQHLWSELGI 465 Query: 69 -MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QH--------- 117 + + K+ DIAV+ + + Y + H Sbjct: 466 TLFNNRSILKLGFGIAHDIAVIRESLPAL-SNI------RACGDGYLDLSHLWKKLLKED 518 Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 L ++ LG ++K+ Q S+W L + Q+ YA+ D L Sbjct: 519 NFVFPFKGDECFTNENLSKLVELCLGQRLNKSDQFSNWERRPLRESQILYASLDAYCLLE 578 Query: 163 LRLQFTEKLQRLG 175 + + RLG Sbjct: 579 VYNVLAVQCDRLG 591 >gi|296215361|ref|XP_002807292.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 3'-5' domain-containing protein 2-like [Callithrix jacchus] Length = 621 Score = 85.0 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 8/159 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + + +D E + L R L ++Q++ G +IR+ G+ L+ +L D Sbjct: 99 LQDFPVLGIDCEWVNLEGRASPLSLLQMASPSGLCVLIRLPKLICGGKTLPRTLLDILAD 158 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGIN 130 K+ D + L +G+ VR + + R +N LK + +L + Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMWQRKNLLSNGLSLKSLAETVLNFS 218 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A+ L+++Q+ YAA D AL L Sbjct: 219 LDKSLVLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257 >gi|302143936|emb|CBI23041.3| unnamed protein product [Vitis vinifera] Length = 526 Score = 85.0 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 32/191 (16%) Query: 16 AARYVDAIAVDTETLGLMPRR---DRLCIVQLS----------PGDGTVDIIRIAAGQKN 62 + I +D E + ++ + ++QL+ V ++ ++A + Sbjct: 22 SLTQSSLIGLDAEWKPIRTQQSSFPTVSLLQLACQLGPRLGPDSAKSLVFLLDLSAISLS 81 Query: 63 A--PNLVGMLVDEKREKI-FHYGRFDIAVLFYTF---GVRV-----RPVFC-TKIASRLT 110 + L + V K+ F + + D+ L TF G P T I + L Sbjct: 82 SIYELLRDVFVSPDVLKLGFRF-KQDLIYLSSTFCSQGCDPGFDRVEPFLDITSIYNYLQ 140 Query: 111 RTYTNQH------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 + L KELLGI++SK Q SDWS L++EQ YAA+D L + Sbjct: 141 HKSLGRRIPKETKSLASICKELLGISLSKELQCSDWSHRPLTEEQKTYAATDAHCLLEIF 200 Query: 165 LQFTEKLQRLG 175 F K+ G Sbjct: 201 NIFHFKVAEKG 211 >gi|260805242|ref|XP_002597496.1| hypothetical protein BRAFLDRAFT_156042 [Branchiostoma floridae] gi|229282761|gb|EEN53508.1| hypothetical protein BRAFLDRAFT_156042 [Branchiostoma floridae] Length = 505 Score = 85.0 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 13/180 (7%) Query: 22 AIAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKI 78 + D E R + ++QL+ G + R+ + +L ++ K+ Sbjct: 1 VLGFDCEWVTRGGTTRP-VSLLQLASRTGECGLFRVCRLNDGTIPRCVRDLLANKNVLKV 59 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135 D L +G+ VR +A R + + GL+ +++LG+ + K++ Sbjct: 60 GVACWEDSRRLERDYGITVRGCVDLRHLAIRHKSLQSGKLGLQALAEQVLGVKMDKSRTV 119 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSD-----LATSCCNFLMD 189 + S+W A LS+EQ+ YAA+D + + F E KLQ+ +S+ + C L+D Sbjct: 120 RCSNWEASKLSEEQITYAANDALVSVDIFTTFLEWKLQQNDKSEKNLRSAVKAMCQGLVD 179 >gi|302697639|ref|XP_003038498.1| hypothetical protein SCHCODRAFT_103723 [Schizophyllum commune H4-8] gi|300112195|gb|EFJ03596.1| hypothetical protein SCHCODRAFT_103723 [Schizophyllum commune H4-8] Length = 644 Score = 85.0 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 8/141 (5%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 R+ +VQ++ GD V +++++ Q L +L D K D L+ G+ + Sbjct: 77 RVALVQVADGDHIV-LVQVSQMQLFPEQLRLLLEDPSVAKTGVGISGDAQKLYRDHGISM 135 Query: 98 RPVFCTKIASRLT------RTYTNQHGLKDNLKELLGINISKAQ-QSSDWSADDLSDEQL 150 V + +R Y++ GL + + K + S+W LSDEQ Sbjct: 136 SNVVDLGLMTRSVDNANWKGPYSSPIGLARLIDFYEKRELRKGRISRSNWEKVPLSDEQK 195 Query: 151 QYAASDVVHLHALRLQFTEKL 171 QYAA+D L + L Sbjct: 196 QYAANDAHCAWVLYGRLRTLL 216 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 18/148 (12%) Query: 46 PGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-T 103 + V +I + + P+ L +L + K + L+ +GV + + Sbjct: 323 ADEHWVILIHLERMHEAFPDKLRELLQNTLVVK----AGSSLQ-LYMQYGVPTANIIDLS 377 Query: 104 KIASRLTRTYTNQHGLKDNL----------KELLGINISKAQQSSDWSADDLSDEQLQYA 153 A + + +D L + N + DW L+ E + YA Sbjct: 378 LFARSVDSNRWKKGSYEDLLTLRELIVAYDEHTFPKNSDGFPKDLDWRL-PLTPELMLYA 436 Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLAT 181 A+ + + L ++ + LA Sbjct: 437 ANSAHGRWHVYTKLATLLSKMVKQPLAA 464 >gi|332261664|ref|XP_003279887.1| PREDICTED: probable exonuclease mut-7 homolog [Nomascus leucogenys] Length = 1115 Score = 85.0 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 40/194 (20%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61 A + + VD E + R R ++Q++ + +A Q Sbjct: 681 AGALLQRHQVVGVDLEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDILALSQPPTGQGAQ 738 Query: 62 -NAPNLVGMLVDEKREKIFHYGRFDIA---------------------VLFYTFGVRVRP 99 + + +L D K+ + D+ +L +RV Sbjct: 739 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPTLAHVEKQILGSIDLLLVHRQMRVAN 798 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 + A + R + GL ++++LG + K QQ S+W L +EQL YAA+D Sbjct: 799 M----PAPGMDRARGLR-GLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQLIYAAADAYC 853 Query: 160 LHALRLQFTEKLQR 173 L + + R Sbjct: 854 LLEVHQALCREPAR 867 >gi|289740869|gb|ADD19182.1| putative 3'-5' exonuclease [Glossina morsitans morsitans] Length = 568 Score = 84.7 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 11/176 (6%) Query: 21 DAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + D E T+ RR + ++QL G + R+ ++ +L +L DE+ K+ Sbjct: 78 KVLGFDCEWVTVSG-SRRP-VALLQLCSNRGYCALFRLCCIRQIPKSLRDLLADEEVIKV 135 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ-- 136 +D L +GV V F + + + GL +L + + K + Sbjct: 136 GVDPGYDAQKLAQDYGVGVASTFDLRYLATMVGRKPE--GLAKLSLSVLKVTLDKHWRLS 193 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 S+W A DL+++Q++YAA+D + + + R S + R E Sbjct: 194 CSNWEAKDLTEKQIEYAANDAFVAVEIFKILAREFKP--RLSWL-SDFTIIKCRIE 246 >gi|229496277|ref|ZP_04389997.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC 35406] gi|229316855|gb|EEN82768.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC 35406] Length = 213 Score = 84.7 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 12/159 (7%) Query: 17 ARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 + DTE + ++Q+S + +IR+ P L L + Sbjct: 42 LERQSVVGFDTESKPCFTRGET--AEVALIQISTLED-AYLIRVNK-TDFTPRLKAFLAN 97 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-HGLKDNLKELLGINI 131 K+ R D V+ V+ + L Y + GL++ + G I Sbjct: 98 PNILKVGLSLRDDYKVMRRRAEVQPEGFIELQ---SLCPAYGIRDAGLQNIYAIIFGERI 154 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 SK+Q+ ++W + LS +Q YAA D + E+ Sbjct: 155 SKSQRVTNWESPTLSFKQQLYAALDAYACLRIYNALMER 193 >gi|117530351|ref|YP_851194.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01] gi|117165963|dbj|BAF36271.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01] Length = 427 Score = 84.7 bits (209), Expect = 8e-15, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 22/167 (13%) Query: 26 DTETLG-----LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D ET G L P ++Q++ + + + + +D K+ Sbjct: 41 DVETWGPQASALDPHTLVARLLQINWPGNAIPYVIDLRALDWPIEIRDIWLDSSVRKVCF 100 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKI-------ASRLTRTYTNQHGLKDNLKELLGINISK 133 RF+ V T+GV ++C + A+ T + ++++L ++K Sbjct: 101 NARFEALVTQATWGVWPDNLYCAMVLFQQIGAATGFKAGRTRGYSYGSLVRDILDTPLNK 160 Query: 134 AQQSSDWSADDLSDEQLQYAASDV---------VHLHALRLQFTEKL 171 SSDWS +L+ QLQYAA DV L +L Sbjct: 161 ELASSDWSG-ELTPAQLQYAALDVGAPRNSNYTSLLLEAYALLRNEL 206 >gi|300121240|emb|CBK21621.2| unnamed protein product [Blastocystis hominis] Length = 500 Score = 84.3 bits (208), Expect = 9e-15, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 29/179 (16%) Query: 8 EGDI--PAECAARYVDAIAVDTE------TLGLMPRRDR-LCIVQ--------------L 44 GD+ P C+ +DTE L R + ++Q + Sbjct: 176 RGDLGVPPSCSLDDTVVEFIDTEEKIMDLIARLKSFRCISVSVIQHSYRSYLGYCSMIMI 235 Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104 S G+ I IA L + + K+ + L FGV + +F + Sbjct: 236 SSGEIDYAIDAIATHNSCW-KLNDLFTNPSIVKVMFNAGDQLLWLQRDFGVFMVNLFDVQ 294 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA---ASDVVHL 160 +A +L Q D L + I+ + +DW L+ L++A A ++L Sbjct: 295 MALKLLDE--KQTSFSDVLMNRMNEYINMRFRRADWRTRPLTAGMLRFARQTAHSTLYL 351 >gi|302810633|ref|XP_002987007.1| hypothetical protein SELMODRAFT_425875 [Selaginella moellendorffii] gi|300145172|gb|EFJ11850.1| hypothetical protein SELMODRAFT_425875 [Selaginella moellendorffii] Length = 797 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 27/192 (14%) Query: 15 CAARYVDAIAVDTE-----TLGLMPRRDRLCIVQLS-------PGDGTVDIIRIA--AGQ 60 A + IA+D E G R+ ++Q++ P V I+ + Sbjct: 31 LALQESSVIALDAEWKPVSVAGTH---PRVSLLQIACRKRDFGPESDLVFIVDVLSIPAS 87 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDI----AVLFYTFGVRVRPVFCTKIASRLTR----- 111 L L + K+ R D+ A L T P + Sbjct: 88 ALLQPLEEALETSRILKLGFKLRQDLINLAASLSSTASFSCEPYIDIGKLYHEVKRKNPR 147 Query: 112 -TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + L +++ G + K+ Q SDW L++EQ+ YAA+D L A+ Sbjct: 148 KLPGDTPSLSHICRDVFGRPLCKSLQCSDWELRPLTEEQISYAAADAHCLLAILDALHPY 207 Query: 171 LQRLGRSDLATS 182 + + RS S Sbjct: 208 IIDMQRSKAVAS 219 >gi|156093870|ref|XP_001612973.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax SaI-1] gi|148801847|gb|EDL43246.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax] Length = 428 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 18/172 (10%) Query: 17 ARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEK 74 A ++ I +D E G R + I+Q+ D D+ + L +L D + Sbjct: 94 AGKINCIGLDVE--GYKIGRNGTVSIIQVCTQDVYLFDLYKCDNSYLFVKCLKELLEDRR 151 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT----NQHGLKDNLKELL--- 127 KI H R D ++LF + + + F T++A L T Q D L + L Sbjct: 152 VIKITHDCREDCSILFNQYSICLNRTFDTQVAFNLLLKETKKDLYQISYDDLLYKCLLLN 211 Query: 128 ---GINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 I K D + ++ E +QYA DV++L L ++L R Sbjct: 212 NKHKIYFHKMISL-DQKIYLKRPIAKELIQYAIQDVIYLKPLMWSLVDRLLR 262 >gi|317152629|ref|YP_004120677.1| 3'-5' exonuclease [Desulfovibrio aespoeensis Aspo-2] gi|316942880|gb|ADU61931.1| 3'-5' exonuclease [Desulfovibrio aespoeensis Aspo-2] Length = 203 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 17/155 (10%) Query: 23 IAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + DTET G P ++QL+ V + +I L +L D++ K Sbjct: 54 LGFDTETRPVFKKGKRPGPP--SLIQLATAS-CVYVFQINL-LPLCNGLCDLLADKEVIK 109 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFC-TKI--ASRLTRTYTNQHGLKDNLKELLGINISKA 134 R DI L G + + I A+R+ HGL++ LLG ISK+ Sbjct: 110 TGVAVRDDILGLQKMAGFTPQQFIDLSDITAAARM-----QTHGLRNMAANLLGFRISKS 164 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 Q S+W+ + L+ +Q+ YAA+D L L Sbjct: 165 AQCSNWAKEHLTPQQITYAATDAWISRELYLALAR 199 >gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1] gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1] Length = 938 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 25/218 (11%) Query: 1 MTTIRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-- 56 + T+ V+ + AE A+ + IA+DTET P L + L+ GT + + Sbjct: 334 LNTVIVNTPETLAELCAKLAQAEWIALDTETTSTDPLNGALVGISLAVEPGTGYYLPVGH 393 Query: 57 AAGQKNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 G+ P L L D ++ K+ ++D+ L G+ + + F T +A L Sbjct: 394 LTGEPQLPLESIRDALAPFLGDPRKPKVGQNLKYDLLAL-RLAGMEAQGLAFDTLLAEWL 452 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQ--------QSSDWSADDLSDEQLQ-YAASDVVHL 160 + GLK+ + LG+ +++ + Q + +S Q+ YAA+D Sbjct: 453 VDPASRALGLKEMAERYLGVQMTRIEELIGTGKNQRT---MAQVSVAQVAPYAAADAEIT 509 Query: 161 HALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L+ E++ + G + L + A+++ G Sbjct: 510 LRLKPILEERMLKAGVTRLFQDVEMPLVPVLADMEWNG 547 >gi|225455316|ref|XP_002271858.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 510 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 32/191 (16%) Query: 16 AARYVDAIAVDTETLGLMPRR---DRLCIVQLS----------PGDGTVDIIRIAAGQKN 62 + I +D E + ++ + ++QL+ V ++ ++A + Sbjct: 22 SLTQSSLIGLDAEWKPIRTQQSSFPTVSLLQLACQLGPRLGPDSAKSLVFLLDLSAISLS 81 Query: 63 A--PNLVGMLVDEKREKI-FHYGRFDIAVLFYTF---GVRV-----RPVFC-TKIASRLT 110 + L + V K+ F + + D+ L TF G P T I + L Sbjct: 82 SIYELLRDVFVSPDVLKLGFRF-KQDLIYLSSTFCSQGCDPGFDRVEPFLDITSIYNYLQ 140 Query: 111 RTYTNQH------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 + L KELLGI++SK Q SDWS L++EQ YAA+D L + Sbjct: 141 HKSLGRRIPKETKSLASICKELLGISLSKELQCSDWSHRPLTEEQKTYAATDAHCLLEIF 200 Query: 165 LQFTEKLQRLG 175 F K+ G Sbjct: 201 NIFHFKVAEKG 211 >gi|320165604|gb|EFW42503.1| hypothetical protein CAOG_07346 [Capsaspora owczarzaki ATCC 30864] Length = 1153 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 64/217 (29%), Gaps = 45/217 (20%) Query: 2 TTIRVHEGDIPAECAARYVD--AIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIR- 55 T + A +V + +DTE T+ ++QL+ D T+ I Sbjct: 672 PTFVTTPEQLNEVSAYLHVPGTVVGMDTEWRPTVMNSKGSSATALLQLATRDRTILIDTC 731 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP---------------- 99 + G + + D KI + D++ L + P Sbjct: 732 VLRGAVLGQFVDRLFSDAAVTKIGYAMTGDMSALQMSCTPDPPPSSATGTAGASGSLPAK 791 Query: 100 -------------------VFC----TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 + T A + + GL ++ +L + K QQ Sbjct: 792 IRSARKKEPRGHHFPAIRSLIDLAQLTSHAGVVAQFGVIAPGLAGLVRAVLKKTLDKRQQ 851 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 SDW L Q+ YAA D L L ++ Sbjct: 852 MSDWERRPLRPAQVHYAALDAFCLLKLHDLMDAAMKA 888 >gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3] gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3] Length = 948 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 59/173 (34%), Gaps = 28/173 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCI----VQLSPGDGTVDIIRIAAGQKNA----PNLVG 68 +A DTET GL D LC + L + I + + A L Sbjct: 353 LAGSSVVAFDTETDGL----DALCAGIVGMSLCADEKQAYFIPLPESAEEATHILSPLKE 408 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++ DE+ K+ H +FD+ VL RP++ T +A L H L + LL Sbjct: 409 LMQDERVLKVAHNAKFDLEVLTRYGLPEARPLYDTMLAHYLIDA-DQGHSLDELAGGLLR 467 Query: 129 INISKAQQSSDWSADDL----------SDEQLQYAASDVVHLHALRLQFTEKL 171 + + D S L YA+ D L ++L Sbjct: 468 YD---TIRYKDLS--PLEIFALRTDVDPKLLCDYASEDAYVTLRLYQALHKQL 515 >gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] Length = 897 Score = 83.9 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 23/191 (12%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-KNAPN------LVGMLVDE 73 +AVDTET GL P RL V L+ +G + +AA + P L +L + Sbjct: 327 GVVAVDTETDGLDPLTCRLVGVSLAVDEGRACYVPLAAPDVRPLPADVVREVLTPLLASQ 386 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 K K+ +FD VL GVR P F T +A+ L + ++ L ++ LG Sbjct: 387 KVSKVGQNLKFDYHVLRRW-GVRPEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTI 445 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR--LGRSDLATSC 183 + K +++ + YAA D L E+L+ LGR Sbjct: 446 HYKDVVEKGASF---ETVPVAEAGV-YAAEDADIALRLSRVLKERLEAGDLGRV-FYEME 500 Query: 184 CNFLMDRAELD 194 L A ++ Sbjct: 501 MPLLSILARME 511 >gi|311261261|ref|XP_003128683.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like [Sus scrofa] Length = 640 Score = 83.1 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 22/166 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 102 LKDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCVLVRLPKLISGGKTLPKTLLDILAD 161 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------GLKDNL 123 K+ D + L +G+ V+ R +H LK Sbjct: 162 GTILKVGVGCSEDASKLLQDYGLVVKGCLD-------LRYLAMRHRNNLLSNGLSLKSLA 214 Query: 124 KELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + +L + K+ + S+W A++L+++Q+ YAA D AL L+ Sbjct: 215 ETVLNFPLDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLRL 260 >gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489] gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489] Length = 929 Score = 83.1 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 30/202 (14%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR-IAAGQKNAPN----------LVGM 69 +A DTET L L LS G + I +G AP L + Sbjct: 349 KIVAFDTETDSLNTHEANLVGFSLSVEKGKGIYVPVILSGGMFAPETISKKDCLAVLEKL 408 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVR---PVFCTKIASRLTRT---YTNQHGLKDNL 123 +++ + H G+FD+ VL G+ + +F T IA+ L + + L+ Sbjct: 409 FAEKELTLVMHNGKFDLEVLAAN-GMSAKTECKIFDTMIAAWLLNPAASGKSPYSLEFLA 467 Query: 124 KELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + LG+ + K Q +D L +Y A D L +++++ Sbjct: 468 ETKLGLKGIEFKDIVQKNQTFAD---VPLEKA-FKYGAEDSDFTLQLYYLLKDEIKKSNL 523 Query: 177 SDLATS-CCNFLMDRAELDLLG 197 L L +++ G Sbjct: 524 EKLFYEMEMKVLPILVSMEIQG 545 >gi|325186923|emb|CCA21467.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 1069 Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 13/160 (8%) Query: 23 IAVDTET---LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKI 78 IA+D+E + IVQ++ D + + K+ + +L + K+ Sbjct: 905 IAIDSEWRPETSRKSMSSKCSIVQIACKDHSFIFDLMTLKMKDMETMFAHLLQSTEIVKL 964 Query: 79 FHYGRFDIAVLFYTFGV-----RVRPVFCTK----IASRLTRTYTNQHGLKDNLKELLGI 129 + + D+ L Y+F +R V I + GL D K LG Sbjct: 965 VYNFQGDLKRLKYSFPEAACFEEIRNVVDLAKPDPILAAENNLARKSRGLSDLAKSSLGF 1024 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + K Q SDW LS Q++YAA D L + + E Sbjct: 1025 PLCKRMQRSDWEQRPLSSAQIEYAALDAYVLLMIYERLRE 1064 >gi|195329844|ref|XP_002031620.1| GM26098 [Drosophila sechellia] gi|194120563|gb|EDW42606.1| GM26098 [Drosophila sechellia] Length = 583 Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 8/159 (5%) Query: 18 RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + D E T+G RR + ++QLS G + R+ ++ +L +L D+ Sbjct: 75 QTFKVLGFDCEWITVGG-SRRP-VALLQLSSHRGLCALFRLCHMKQIPKDLRELLEDDDV 132 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ + D L + +GV V + + GL K L + K Sbjct: 133 IKVGVAPQEDAMKLSHDYGVGVASTLDLRFLCVMAGHKPE--GLGKLSKTHLNYTLDKHW 190 Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + S+W A L +QL YAA+D + A+ + LQ Sbjct: 191 RLACSNWEAKTLEPKQLDYAANDALMAVAIYQKLCRDLQ 229 >gi|157823431|ref|NP_001102185.1| exonuclease 3'-5' domain-containing protein 2 [Rattus norvegicus] gi|149025011|gb|EDL81378.1| exonuclease 3''-5'' domain-like 2 (predicted) [Rattus norvegicus] gi|183986019|gb|AAI66432.1| Exdl2 protein [Rattus norvegicus] Length = 648 Score = 82.7 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 14/162 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 126 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCALVRLPRLIYGGKTLPRTLLDILAD 185 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127 K+ D L +G+ VR L N LK + LL Sbjct: 186 GTILKVGVGCSEDANKLLQDYGLIVRGCLD---LRYLAMKQGNSVLCNGLSLKSLAETLL 242 Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A++L+++Q+ YAA D AL L Sbjct: 243 NFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALFLHL 284 >gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] Length = 927 Score = 82.7 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 18/206 (8%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 E DI A D I++DTET +L + + + + + A N Sbjct: 340 TEADIQALVNLLSAADVISLDTETTSTNAIDAQLVGLSFAVEEKKAYYVPVPEQANEAQN 399 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + + K+ ++D+ VL + P+F T IA L + +H + Sbjct: 400 IVDKFKAIYENPNTLKVGQNIKYDLEVLRNYGIMLQGPLFDTMIAHYLLQPEL-RHNMDF 458 Query: 122 NLKELLG---INIS-----KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQ 172 + L ++I K + + +L+ ++ YA D L+ KL Sbjct: 459 MAEVYLNYETVHIDALIGAKGKTQKN--MRELAPSEVYAYACEDADITLQLKNVLQPKLV 516 Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197 G L + AE++ G Sbjct: 517 EAGVERLFNEVEMPLIPVLAEMECNG 542 >gi|21356549|ref|NP_650075.1| CG6744 [Drosophila melanogaster] gi|10726453|gb|AAF54639.2| CG6744 [Drosophila melanogaster] gi|19528113|gb|AAL90171.1| AT25352p [Drosophila melanogaster] Length = 583 Score = 82.7 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 8/159 (5%) Query: 18 RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + D E T+G RR + ++QLS G + R+ ++ +L +L D+ Sbjct: 75 QTFKVLGFDCEWITVGG-SRRP-VALLQLSSHRGLCALFRLCHMKQIPQDLRELLEDDSV 132 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ + D L + +GV V + + GL K L + K Sbjct: 133 IKVGVAPQEDAMKLSHDYGVGVASTLDLRFLCVMAGHKPE--GLGKLSKTHLNYTLDKHW 190 Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + S+W A L +QL YAA+D + A+ + LQ Sbjct: 191 RLACSNWEAKTLEPKQLDYAANDALMAVAIYQKLCRDLQ 229 >gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922] gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922] Length = 941 Score = 82.7 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 19/195 (9%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDE 73 + +D+ A DTET L P +L + S G + +A N + + Sbjct: 367 KTLDSFAFDTETTSLDPLEAKLVGISFSWEKGKGYYLPFPEDFDDAKNIILEFAELFSNP 426 Query: 74 KREKIFHYGRFDIAVLFYTFGVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG--- 128 EKI H ++D+ VL+ G+R+ F T IA L +H L + LG Sbjct: 427 AIEKIGHNIKYDLKVLYKY-GIRIDGEN-FDTMIAHYLLNP-DMRHNLDVLSETYLGYKP 483 Query: 129 INIS-----KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 ++I K + ++ DL + Q +Y D L+ F +L+++ + L + Sbjct: 484 VSIETLIGKKGKNQKNFREVDLIE-QTEYGTEDSDVTFQLKNIFEPELEKVSLTKLFRNI 542 Query: 183 CCNFLMDRAELDLLG 197 + A +++ G Sbjct: 543 EMPLMKVLATMEIEG 557 >gi|311261263|ref|XP_001925126.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like [Sus scrofa] Length = 624 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 22/166 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 102 LKDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCVLVRLPKLISGGKTLPKTLLDILAD 161 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------GLKDNL 123 K+ D + L +G+ V+ R +H LK Sbjct: 162 GTILKVGVGCSEDASKLLQDYGLIVKGCLD-------LRYLAMRHRNNLLSNGLSLKSLA 214 Query: 124 KELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + +L + K+ + S+W A++L+++Q+ YAA D AL L+ Sbjct: 215 ETVLNFPLDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLRL 260 >gi|332228976|ref|XP_003263664.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 1 [Nomascus leucogenys] gi|332228978|ref|XP_003263665.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 2 [Nomascus leucogenys] gi|332228980|ref|XP_003263666.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 3 [Nomascus leucogenys] gi|332228982|ref|XP_003263667.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 4 [Nomascus leucogenys] Length = 621 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 8/159 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 99 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130 K+ D + L +G+ VR + + R N LK + +L Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W+A+ L+++Q+ YAA D AL L Sbjct: 219 LDKSLLLRCSNWNAETLTEDQVIYAARDAQISVALFLHL 257 >gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301] gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301] Length = 892 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-------KNAPNLVGML 70 R+ A+DTET GL PR +L + ++ G I + L +L Sbjct: 314 RHAGRFAIDTETTGLNPRHAKLVGISVATAPGRAAYIPLGHEDGPQLPRPLALERLAPVL 373 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D KIFH +FD+ VL PV T + S + HG+ + L Sbjct: 374 ADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELSALHLDHR 433 >gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii] Length = 2579 Score = 82.4 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%) Query: 89 LFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDL 145 L GV V P+F T IA+++ + G K ++ LG+ + K Q+SDWS+ L Sbjct: 2059 LQSDGGVFVSGPLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHL 2118 Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG-------W 198 S EQL YAA D L L+ + +KL+ ++ L ++L G W Sbjct: 2119 SQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQIDHARW 2178 Query: 199 ENVDIFSH 206 + ++ +H Sbjct: 2179 KELE--AH 2184 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 + D E R ++ VD ET GL P R+ ++QL+ D + + A ++P L Sbjct: 1863 DDDGSDEREVRL--SMGVDVETTGLDPFSARIRLLQLALPDFPALLFDLFALPVSSPALR 1920 Query: 68 G---MLVDEKREKIFHYGRFDIAVLFYTFGV 95 +L + K+FH G+FD+ G+ Sbjct: 1921 PVRLLLASPRIRKVFHNGQFDL-CFLAAAGL 1950 >gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] Length = 921 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 76/209 (36%), Gaps = 22/209 (10%) Query: 8 EGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP-- 64 E DI C +++DTET L L + S + I Q+ A Sbjct: 335 EEDINNLCDLLLTKRIVSLDTETTSLNALEAELVGLSFSVSPQEAFYVPIPNEQQKAQKI 394 Query: 65 --NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + +E+ EK+ ++DI VL P+F T IA L + +H + D Sbjct: 395 VNAFQPLYENEEIEKVGQNIKYDIEVLRNYGITMKGPLFDTMIAHYLLQPEL-RHNMDDM 453 Query: 123 LKELLG---INIS-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171 + L I+I K Q + L+ EQ+ YA D L+ F KL Sbjct: 454 AETYLRYKTIHIDQLIGAKGKDQL----NMRSLAPEQIVDYACEDADITLQLKNIFEPKL 509 Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLGWE 199 + G L + AE++ G + Sbjct: 510 KEAGLYPLFKEVEMPLIYVLAEMECNGVK 538 >gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5] gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5] Length = 915 Score = 82.4 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-------KNAPNLVGML 70 R+ A+DTET GL PR +L + ++ G + + L +L Sbjct: 337 RHAGRFAIDTETTGLNPRHAKLVGISVATAPGRAAYVPLGHEDGPQLPRPLALERLAPVL 396 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D KIFH +FD+ VL PV T + S + HG+ + L Sbjct: 397 ADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELSALHLDHR 456 >gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756] gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756] Length = 966 Score = 82.0 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 66/185 (35%), Gaps = 29/185 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-------------------DGTVDIIRIA 57 A +A DTET L LC V L+ + D+++I Sbjct: 374 ATAKGVVAFDTETDALSSATAGLCGVSLAIAPGEACYIPVGHCEKEGLALEAAADLVQIP 433 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 A L +L D K+ ++DIAVL G++V P+ T + S + + H Sbjct: 434 LADVIA-TLKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVSPIEDTMLISYVLEAGLHGH 491 Query: 118 GLKDNLKELLGINISKAQQSSDWSADD-------LSDEQLQYAASDVVHLHALRLQFTEK 170 G+ + + LG +Q + LS+ YAA D L + Sbjct: 492 GMDELSELWLGHKPIPFKQVAGTGKAQISFKHVALSEA-TAYAAEDADVTLRLYETLKPR 550 Query: 171 LQRLG 175 L R G Sbjct: 551 LAREG 555 >gi|317484427|ref|ZP_07943341.1| 3'-5' exonuclease [Bilophila wadsworthia 3_1_6] gi|316924315|gb|EFV45487.1| 3'-5' exonuclease [Bilophila wadsworthia 3_1_6] Length = 198 Score = 82.0 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 10/152 (6%) Query: 23 IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + DTE ++QL+ G V +IR+ L G+L D K Sbjct: 52 LGFDTESRPSFKKGKSY--PTSLIQLA-GSELVVLIRLNL-TPFCGALAGLLADPGIIKA 107 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 R DI L + +A + GL+ +L+G ISKA Q S Sbjct: 108 GVAIRDDIRALQKLHEFTPGGLAD--LAEMAKQRGIKAQGLRTLAAQLMGCRISKAAQCS 165 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +W+ L+ +Q++YAA+D + L ++ Sbjct: 166 NWAKKTLTPQQIRYAATDAWIGREIYLCMMDQ 197 >gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654] gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654] Length = 932 Score = 82.0 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 80/208 (38%), Gaps = 30/208 (14%) Query: 18 RYVDAIAVDTETLGLMPRRDR---LCI---------V----QLSPGDGTVDIIRIAAGQK 61 R +AVDTET L + +C+ + ++ G+G ++A GQ Sbjct: 342 RDHGYVAVDTETTSLNEMQAEFAGICLAVVPGEACYIPVGHKVGDGEGLFADDKLAEGQL 401 Query: 62 NAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + + L +L D KIF ++D + G+ V P+ T + S + + H Sbjct: 402 SLDDVLAALKPVLEDPAILKIFQNAKYDTKIFSRH-GLNVAPIDDTMLMSYAMFSGLHNH 460 Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G+ + LG + + + + + D ++YAA D L F + Sbjct: 461 GMDTLSEHYLGHTPISIKTLLGTGKSAITFDKVKIEDA-VKYAAEDADVTLRLWQLFKPR 519 Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLG 197 L R + + + + A++++ G Sbjct: 520 LHREKVTTVYETLERPLVPVLAQMEMHG 547 >gi|308809972|ref|XP_003082295.1| ankyrin-like protein (ISS) [Ostreococcus tauri] gi|116060763|emb|CAL57241.1| ankyrin-like protein (ISS) [Ostreococcus tauri] Length = 876 Score = 82.0 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 54/163 (33%), Gaps = 24/163 (14%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDR-LCIVQLSPGD--GTVDIIRIAAGQKNAP-NLVG 68 + +A + D E R R L +Q+SP T I + G+ L+ Sbjct: 581 EVILSASCEAFSFDCE-----WRDPRPLSTLQISPAHTRETFIIDALRVGKDAFSQFLIA 635 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFG--VRVR-----PVFCTKIASRLTRTYTNQHGLKD 121 + D KI D + + G V + L Sbjct: 636 VFGDFSVRKIGFAAEQDWRRIRISAGNAALPASYCNANVIDLQ--------GVELVSLAS 687 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 + + LG + K Q S+W A LS +QL YAA D L + Sbjct: 688 VVADTLGFALDKRCQRSNWDARPLSQQQLFYAALDAEVLLDIA 730 >gi|242001434|ref|XP_002435360.1| 3-5 exonuclease, putative [Ixodes scapularis] gi|215498690|gb|EEC08184.1| 3-5 exonuclease, putative [Ixodes scapularis] Length = 587 Score = 82.0 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 39/201 (19%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------NLVGMLV 71 R + +D+E + R R+ ++QL+P ++R+ + A +L +L Sbjct: 55 REAGVLGLDSEWTTVQGHRHRVALLQLAPNANFSVLLRLCQFTEEASTVTLPESLRDILK 114 Query: 72 DEKREKI-------FHYGRFDIAV-------LFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 D K K+ H D + L + G + + Sbjct: 115 DVKIIKVGVGVIDDAHKLFQDYGIDVWGCLDLRHALGCLPE------------LGHFPKV 162 Query: 118 GLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK----- 170 GL+ + LLG++ K+ + S+W AD L+++Q++YAA D + + Q Sbjct: 163 GLRSLSESLLGVSPDKSWRLRCSNWEADVLTEKQIRYAADDALLAVQIFDQMIRNRLTFF 222 Query: 171 LQRLGRSDLATSCCNFLMDRA 191 L R G D + A Sbjct: 223 LYRPGWYDKLKEDTIAMCQEA 243 >gi|21397264|gb|AAM51828.1|AC105730_2 Putative nucleolar protein [Oryza sativa Japonica Group] gi|22773226|gb|AAN06832.1| Putative nucleolar protein [Oryza sativa Japonica Group] Length = 523 Score = 82.0 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 1/102 (0%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + + + V+ AVD E + C++Q+S + + Sbjct: 146 TLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIY 205 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 L D + K+ H DI L F + V +F T Sbjct: 206 IGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDT 247 >gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13] gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13] Length = 925 Score = 81.6 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 25/207 (12%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63 + D+ + + A DTET G+ P + +V +S + + + A A Sbjct: 341 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEAAK 396 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + K KI +FDI VL P+F T IA L +HG+ Sbjct: 397 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 455 Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171 + L ++I K + Q S ++ EQ+ +YAA D L+ F +L Sbjct: 456 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADVTLKLKNYFAPEL 512 Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197 ++ G L T+ + AE++ G Sbjct: 513 KKEGLESLFTTIEMPLIYVLAEMEATG 539 >gi|311246922|ref|XP_003122404.1| PREDICTED: probable exonuclease mut-7 homolog [Sus scrofa] Length = 547 Score = 81.6 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 54/205 (26%) Query: 12 PAEC----AARYVD--AIAVDTETLGLMP-----RRDRLCIVQLSPGDGTVDIIRIA--- 57 PA C AAR ++VD E P R + ++Q++ +G V ++ + Sbjct: 211 PALCCTLTAARLQPGQVVSVDLE---WRPSFGVGGRPQASLMQVAV-EGRVFLLDLPQLL 266 Query: 58 ------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111 Q + + +L D K+ + D+ L + + A + R Sbjct: 267 SPARGQEPQAFSQLVSRLLADPSITKLGYGMAGDLRSLGASCPALAQ-------AQKQLR 319 Query: 112 TYTNQH-----------------------GLKDNLKELLGINISKAQQSSDWSADDLSDE 148 + GL ++++LG + K QQ S+W L +E Sbjct: 320 GSLDLLQVHKQLRVVDAPAPGVDGAAGPRGLSLLVQQVLGKPLDKTQQLSNWDRRPLGEE 379 Query: 149 QLQYAASDVVHLHALRLQFTEKLQR 173 QL YAA+D L + + R Sbjct: 380 QLVYAAADAYCLLEVYWALCREPAR 404 >gi|195500059|ref|XP_002097212.1| GE24622 [Drosophila yakuba] gi|194183313|gb|EDW96924.1| GE24622 [Drosophila yakuba] Length = 583 Score = 81.6 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 8/159 (5%) Query: 18 RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + D E T+G RR + ++QLS G + R+ ++ +L +L D+ Sbjct: 75 QTFKVLGFDCEWITVGG-SRRP-VALLQLSSHRGLCALFRLCHMKQIPKDLRDLLEDDAV 132 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ + D L + +GV V + + GL K L + K Sbjct: 133 IKVGVAPQEDAIKLSHDYGVGVASTLDLRFLCVMAGHKPE--GLGKLSKTHLNYTLDKHW 190 Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + S+W A +L +QL YAA+D + A+ + LQ Sbjct: 191 RLACSNWEAKNLEPKQLDYAANDALMAVAIYQKLCRDLQ 229 >gi|190689663|gb|ACE86606.1| exonuclease 3'-5' domain-like 2 protein [synthetic construct] gi|190691025|gb|ACE87287.1| exonuclease 3'-5' domain-like 2 protein [synthetic construct] Length = 621 Score = 81.6 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 99 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130 K+ D + L +G+ VR + + R N LK + +L Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A+ L+++Q+ YAA D AL L Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257 >gi|301129155|ref|NP_001180289.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo sapiens] gi|301129157|ref|NP_001180290.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo sapiens] gi|301129159|ref|NP_001180291.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo sapiens] gi|301129161|ref|NP_001180292.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo sapiens] gi|119601391|gb|EAW80985.1| exonuclease 3'-5' domain-like 2, isoform CRA_b [Homo sapiens] Length = 621 Score = 81.6 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 99 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130 K+ D + L +G+ VR + + R N LK + +L Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A+ L+++Q+ YAA D AL L Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257 >gi|149737203|ref|XP_001500310.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 1 [Equus caballus] Length = 625 Score = 81.6 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 8/159 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 103 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCVLVRLPKLVCGGKTLPKTLLDILAD 162 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130 + K+ D + L +G+ V+ + + R N LK + +L Sbjct: 163 DTILKVGVGCSEDASKLLQDYGLVVKGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 222 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A++L+++Q+ YAA D AL L Sbjct: 223 LDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLHL 261 >gi|194380670|dbj|BAG58488.1| unnamed protein product [Homo sapiens] Length = 621 Score = 81.6 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 99 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130 K+ D + L +G+ VR + + R N LK + +L Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A+ L+++Q+ YAA D AL L Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257 >gi|328776161|ref|XP_391887.3| PREDICTED: probable exonuclease mut-7 homolog [Apis mellifera] Length = 954 Score = 81.6 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 41/188 (21%) Query: 17 ARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---- 68 V + +D+E ++ L ++Q++ D V II + L Sbjct: 410 LDGVSIVGIDSEWKPCF---GTKQTELALIQIATKD-NVYIIDVTTMGNKFTELWAKLAL 465 Query: 69 -MLVDEKREKIFHYGRFDIAVLFYTFGVRVR------------PVFCTKIASRLTRTY-- 113 + ++ K+ D+ V+ + + ++ +L Y Sbjct: 466 VLFENKNILKLGFGIAQDMTVIRSSLPALSKIKIYGQGYLDIVNLW-----KKLVEDYKF 520 Query: 114 ---------TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 + L ++ LG ++K+ Q S+W L + Q+ YAA D L + Sbjct: 521 VFPHESDDQFTKKNLSKLVELCLGQKLNKSDQFSNWEQRPLRESQIIYAALDAYCLLEIY 580 Query: 165 LQFTEKLQ 172 + + Sbjct: 581 ATLEIQCE 588 >gi|237681098|ref|NP_598559.2| exonuclease 3'-5' domain-containing protein 2 [Mus musculus] Length = 650 Score = 81.6 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 14/162 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 128 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCALVRLPRLIYGGRTLPRTLLDILAD 187 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127 K+ D L +G+ VR L N LK + +L Sbjct: 188 GAILKVGVGCSEDANKLLQDYGLIVRGCLD---LRYLAMKQGNNILCNGLSLKSLAETIL 244 Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A++L+++Q+ YAA D AL L Sbjct: 245 NFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALFLHL 286 >gi|148670716|gb|EDL02663.1| exonuclease 3''-5'' domain-like 2, isoform CRA_a [Mus musculus] Length = 652 Score = 81.6 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 14/162 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 130 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCALVRLPRLIYGGRTLPRTLLDILAD 189 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127 K+ D L +G+ VR L N LK + +L Sbjct: 190 GAILKVGVGCSEDANKLLQDYGLIVRGCLD---LRYLAMKQGNNILCNGLSLKSLAETIL 246 Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A++L+++Q+ YAA D AL L Sbjct: 247 NFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALFLHL 288 >gi|114653639|ref|XP_510030.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 8 [Pan troglodytes] gi|114653641|ref|XP_001141629.1| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes] gi|332842572|ref|XP_001141128.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 2 [Pan troglodytes] gi|332842574|ref|XP_003314457.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 [Pan troglodytes] Length = 621 Score = 81.2 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 99 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130 K+ D + L +G+ VR + + R N LK + +L Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A+ L+++Q+ YAA D AL L Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257 >gi|74147230|dbj|BAE27515.1| unnamed protein product [Mus musculus] Length = 650 Score = 81.2 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 14/162 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 128 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCALVRLPRLIYGGRTLPRTLLDILAD 187 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127 K+ D L +G+ VR L N LK + +L Sbjct: 188 GAILKVGVGCSEDANKLLQDYGLIVRGCLD---LRYLAMKQGNNILCNGLSLKSLAETIL 244 Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A++L+++Q+ YAA D AL L Sbjct: 245 NFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALFLHL 286 >gi|289739467|gb|ADD18481.1| putative 3'-5' exonuclease [Glossina morsitans morsitans] Length = 349 Score = 81.2 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 15/206 (7%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+R H GD + D E + + R + ++QL+ +G + R+ Sbjct: 40 NTLRQHCGD---------YKVLGFDCEWITIGRVRKPVALLQLASPNGFCGLFRLCHMDH 90 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +L +L D++ K+ D L +G+ V F + + + R GL+ Sbjct: 91 IPESLKNLLADKEIIKVGVNPAEDARKLQGDYGIYVASTFDIRYLAAMIRC--KPLGLEK 148 Query: 122 NLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + LL ++ K S+W D L D+Q++YAA+D + +L+ + Sbjct: 149 LSRSLLNVDFVKPWYIARSNWEFDKLDDDQVEYAANDAFAGVEIFKHLANRLKPRNYRNF 208 Query: 180 ATSCCNFLMDRAE--LDLLGWENVDI 203 + + + E LDL EN+ I Sbjct: 209 TNTDFIAIKSKIEYLLDLDFSENIPI 234 >gi|297695392|ref|XP_002824927.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like isoform 1 [Pongo abelii] gi|297695394|ref|XP_002824928.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like isoform 2 [Pongo abelii] gi|297695396|ref|XP_002824929.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like isoform 3 [Pongo abelii] Length = 621 Score = 81.2 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 99 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130 K+ D + L +G+ VR + + R N LK + +L Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A+ L+++Q+ YAA D AL L Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257 >gi|218885986|ref|YP_002435307.1| 3'-5' exonuclease [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756940|gb|ACL07839.1| 3'-5' exonuclease [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 201 Score = 81.2 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 8/169 (4%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQ 60 IR E A R D + DTET R+ ++ +VQL+ D V + ++ Sbjct: 32 IRSEEELADAVDRLRDEDVLGFDTET-RPTFRKGKVNLPSLVQLACSD-VVYLFQL-NWL 88 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L +L D K R DI L F V +R HGL+ Sbjct: 89 PFGEALATVLSDADIVKTGVAVRDDIRDLQKLFAFNDAGVVDLGEVAR--DLGLETHGLR 146 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + L + ISK Q S+WS +L+ +Q+ YAA+D + L+ Sbjct: 147 NLAANFLEVRISKGAQCSNWSNRELAPQQVLYAATDAWVSREIHLRMRR 195 >gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] Length = 944 Score = 81.2 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 72/207 (34%), Gaps = 15/207 (7%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN- 62 I EG + + IAVDTET L L + +S I +A N Sbjct: 354 ITTEEGLKALINSLQDAPRIAVDTETTSLNTFEAELAGISISTEARKARFIALANSSLNP 413 Query: 63 ---APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHG 118 L +L + + K ++DI VL G+ + PV F T +AS + +H Sbjct: 414 QSALELLRPLLENPELPKTGQNLKYDILVLKKY-GIDLTPVGFDTMLASYVLDPE-EKHN 471 Query: 119 LKDNLKELLGINISKAQQSSDWSADDL-----SDEQL-QYAASDVVHLHALRLQFTEKLQ 172 L D LG + ++ + L EQL YA D L F +KL+ Sbjct: 472 LDDLAARHLGYKTTTFEELTGTGKAKLHIFDVEPEQLSDYACQDADLALQLEEIFRKKLE 531 Query: 173 RLGRSDLATS--CCNFLMDRAELDLLG 197 + A ++ G Sbjct: 532 GEKELLWLCEHIEFPLVSVLAAMEHAG 558 >gi|299473129|emb|CBN78705.1| Similarity to ribonuclease D (RNase D) [Ectocarpus siliculosus] Length = 1260 Score = 81.2 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 61/203 (30%), Gaps = 51/203 (25%) Query: 19 YVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRI------------------ 56 A+AVD E + P +C++QL+ G+ T + + Sbjct: 667 QQPALAVDCEWRPARVAGTPANP-VCLLQLAAGERTFVVDMLHVCRPKSAAAATDAVEET 725 Query: 57 -----AAGQKNAPNLVGMLVDEKREKIFHYGRFD----------IAVLFYTFGVR----- 96 L +L K+ + D + GV Sbjct: 726 ASGLTKREALLEEALGAVLGSPGVVKVGLGPKADFQSLIRSYPHMPCFRRVCGVVNLCHV 785 Query: 97 VRPVFCTKIASRLTRTYTN-QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155 AS L + + L +LG + K++Q SDW LS Q +YAA Sbjct: 786 ASN------ASSLRGKPADEKASLSRLCNVVLGKPLDKSEQCSDWGNRPLSGRQKRYAAL 839 Query: 156 DVVHLHALRLQFTEKLQRLGRSD 178 D + + ++ R + Sbjct: 840 DARATLLVHRELAPEVPPE-RME 861 >gi|109084062|ref|XP_001108714.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 1 [Macaca mulatta] gi|297298135|ref|XP_001108864.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 2 [Macaca mulatta] Length = 620 Score = 81.2 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G +IR+ G+ L+ +L D Sbjct: 99 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLIRLPKLICGGKTLPRTLLNILAD 158 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130 K+ D + L +G+ VR + + R N LK + +L Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A+ L+++Q+ YAA D AL L Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257 >gi|94987515|ref|YP_595448.1| ribonuclease D [Lawsonia intracellularis PHE/MN1-00] gi|94731764|emb|CAJ55127.1| Ribonuclease D [Lawsonia intracellularis PHE/MN1-00] Length = 198 Score = 81.2 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 62/169 (36%), Gaps = 11/169 (6%) Query: 7 HEGDI-PAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 E ++ A + + DTE +VQL+ V +IR++ Sbjct: 34 TENELRDALDLLKDETVLGFDTEARPSFKKGKSY--PTALVQLASSQH-VILIRLSK-VP 89 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 LV +L K K DI +L + IA R GL+ Sbjct: 90 LGELLVNILSCAKIIKAGVAIHEDIRLLQKLHPFEAEGIID--IAEMARRLQLKAQGLRT 147 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +LG +SKA Q S+W +LS +Q+ YAA+D L + E Sbjct: 148 LAANILGCRVSKAVQCSNWEKKELSPQQVLYAATDAWVGRELYFKLLEM 196 >gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B] gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B] Length = 921 Score = 80.8 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 25/207 (12%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63 + D+ + + A DTET G+ P + +V +S + + + A A Sbjct: 337 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEAAK 392 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + K KI +FDI VL P+F T IA L +HG+ Sbjct: 393 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 451 Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171 + L ++I K + Q S ++ EQ+ +YAA D L+ F +L Sbjct: 452 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADITLKLKNYFAPEL 508 Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197 ++ G L T+ + AE++ G Sbjct: 509 KKEGLESLFTTIEMPLIYVLAEMEATG 535 >gi|326671072|ref|XP_003199355.1| PREDICTED: probable exonuclease mut-7 homolog [Danio rerio] Length = 847 Score = 80.8 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 27/192 (14%) Query: 5 RVHEGDIPAECAARYVDAIAVDTE-TLGLMP-RRDRLCIVQLSPGDGTVDII----RIAA 58 + E D E + + +D E G R+ ++QL+ D + I+ Sbjct: 445 TLEEVDKCREAVLKSGSVVGMDMEWRAGFGTVSSQRVALIQLAVQDQVFLLDLCAHAISH 504 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVL------FYTFGVRVRPVFCT----KIASR 108 + +L D+K K+ + D+ L +++ V + R Sbjct: 505 HSTTVDFIRALLSDKKILKLGYGMSGDLRSLVSTWPDLREEPMKMEGVLDLLLIHQELQR 564 Query: 109 L-----------TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 + GL ++++LG ++K++Q S+W L QL+YAA+D Sbjct: 565 CWLGNKGCRSVEVSEGPAEKGLSLLVQQVLGKPLNKSEQLSNWERRPLRTSQLRYAAADA 624 Query: 158 VHLHALRLQFTE 169 L + L + Sbjct: 625 YCLLDIYLILSR 636 >gi|302807740|ref|XP_002985564.1| hypothetical protein SELMODRAFT_122415 [Selaginella moellendorffii] gi|300146770|gb|EFJ13438.1| hypothetical protein SELMODRAFT_122415 [Selaginella moellendorffii] Length = 442 Score = 80.8 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 27/187 (14%) Query: 15 CAARYVDAIAVDTE-----TLGLMPRRDRLCIVQLS-------PGDGTVDIIRIA--AGQ 60 A + IA+D E G+ R+ ++Q++ P V I+ + Sbjct: 31 LALQESSVIALDAEWKPVLVAGMH---PRVSLLQIACRKRDFGPESDLVFIVDVLSIPAS 87 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDI----AVLFYTFGVRVRPVFCTKIASRLTR----- 111 L L + K+ R D+ A L T P + Sbjct: 88 ALLQPLEEALETSRILKLGFKLRQDLINLAASLSSTASFSCEPYIDIGKLYHEVKRKNPR 147 Query: 112 -TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + L +++ G + K+ Q SDW L++EQ+ YAA+D L A+ Sbjct: 148 KLPGDTPSLSHICRDVFGRPLCKSLQCSDWELRPLTEEQISYAAADAHCLLAILDALHPY 207 Query: 171 LQRLGRS 177 + + RS Sbjct: 208 IIDMQRS 214 >gi|298373694|ref|ZP_06983683.1| 3'-5' exonuclease domain protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274746|gb|EFI16298.1| 3'-5' exonuclease domain protein [Bacteroidetes oral taxon 274 str. F0058] Length = 194 Score = 80.8 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 12/162 (7%) Query: 13 AECAARYVDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A + + DTET +++ ++Q+S + R+ K+ L L Sbjct: 36 AVDCLMQEEVVGFDTETKPSFTHGKSNKIALMQISTAKKCF-LFRLQMIGKS-EALKNFL 93 Query: 71 VDEKREKI---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +EK +KI H D+ L + + + + + GL+ + Sbjct: 94 ENEKIKKIGLALHG---DLRNLRVWDKFTPKNFIDLQ--KIVIQYGIEELGLQRIYAIIF 148 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 G ISK+QQ S+W A L+ Q YAA+D + L+ E Sbjct: 149 GKKISKSQQLSNWEAKILNQAQQIYAATDAWACREIYLKLIE 190 >gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] Length = 994 Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 30/196 (15%) Query: 8 EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---- 62 E D+ A A+ +AVDTET L L + L+ G G I + G Sbjct: 392 EADLEEWIARAQAAGLVAVDTETSALDAVGADLVGISLATGPGAACYIPLGHGNTTDMFA 451 Query: 63 -----------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111 L +L D+ K+ ++D+ VL G+ V P+ T + S Sbjct: 452 ERPRQIDKARALALLKPLLEDDSVLKVGQNIKYDLTVLARH-GIAVAPIDDTMVMSFCLD 510 Query: 112 TYTN-----QHGLKDNLKELLGINISK-------AQQSSDWSADDLSDEQLQYAASDVVH 159 HG+ + + LG K +++ ++ L D +YAA D Sbjct: 511 AGRGEPMPFGHGMDELAERHLGHTTIKFKDVAGTGKKAISFAEVPLPDA-TRYAAEDAEV 569 Query: 160 LHALRLQFTEKLQRLG 175 L +L G Sbjct: 570 TWRLHAVLAPRLAEEG 585 >gi|195055346|ref|XP_001994580.1| GH15379 [Drosophila grimshawi] gi|193892343|gb|EDV91209.1| GH15379 [Drosophila grimshawi] Length = 591 Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 8/166 (4%) Query: 18 RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 R+ + D E T+G RR + ++QLS G + R+ ++ +L +L DE Sbjct: 74 RHFKVLGFDCEWITVGG-SRRP-VALLQLSSHQGLCALFRLCCMKQIPKDLRDLLEDEDL 131 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ + D L + FGV V F + + + GL K L + K+ Sbjct: 132 IKVGVAPQDDAMKLSHDFGVGVASTFDLRYMAVMAGHPAE--GLGKLSKTHLDFQLDKSW 189 Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + S+W A L+ QL YAA D + A+ + + LQR D Sbjct: 190 RLACSNWEAPQLTAAQLNYAAYDALAAVAIFKKLSYDLQRQQFWDW 235 >gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19] gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19] Length = 921 Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 25/207 (12%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63 + D+ + + A DTET G+ P + +V +S + + + A A Sbjct: 337 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEAAK 392 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + K KI +FDI VL P+F T IA L +HG+ Sbjct: 393 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 451 Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171 + L ++I K + Q S ++ EQ+ +YAA D L+ F +L Sbjct: 452 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADVTLKLKNYFAPEL 508 Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197 ++ G L T+ + E++ G Sbjct: 509 KKEGLESLFTTIEMPLIYVLVEMEATG 535 >gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7] Length = 921 Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 25/207 (12%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63 + D+ + + A DTET G+ P + +V +S + + + A A Sbjct: 337 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEAAK 392 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + K KI +FDI VL P+F T IA L +HG+ Sbjct: 393 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 451 Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171 + L ++I K + Q S ++ EQ+ +YAA D L+ F +L Sbjct: 452 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADVTLKLKNYFAPEL 508 Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197 ++ G L T+ + E++ G Sbjct: 509 KKEGLESLFTTIEMPLIYVLVEMEATG 535 >gi|221052342|ref|XP_002257747.1| dna binding protein [Plasmodium knowlesi strain H] gi|193807578|emb|CAQ38083.1| dna binding protein, putative [Plasmodium knowlesi strain H] Length = 470 Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 5/133 (3%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 LC++QLS + I + P + ++ DEK +K+ H R D +F +++ Sbjct: 148 LCLIQLSS-KNLCFVFNINKLKGKIPMCVKEIMEDEKIKKVCHDIRND-KDMFEDQDIQI 205 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 R F + + Y L+ +K L N+ K + S+W + DL +EQ+ YAA+D Sbjct: 206 RNTFD--LYDFCMKNYLYPPSLQFLVKLFLKKNLEKHFRLSNWLSHDLKEEQILYAAADA 263 Query: 158 VHLHALRLQFTEK 170 + + E Sbjct: 264 YASREVYMVLKEM 276 >gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] Length = 927 Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 22/208 (10%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 E D+ A D I++DTET +L + + + + + A N Sbjct: 340 TEADMQALVTLLSTADVISLDTETTSTNAIEAQLVGLSFAIEEKKAYYVPVPEQADEAQN 399 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + + K K+ ++D+ VL P+F T +A L + +H + Sbjct: 400 IVNRFKAIYENPKTLKVGQNIKYDLEVLRNYGIALQGPLFDTMVAHYLLQPEL-RHNMDF 458 Query: 122 NLKELLG---INIS-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170 + L ++I KAQ+ + +L+ ++ YA D L+ K Sbjct: 459 MAEVYLNYETVHIDALIGPKGKAQK----NMRELAPSEVYNYACEDADITLQLKNVLQPK 514 Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLG 197 L G L + AE++ G Sbjct: 515 LVEAGVERLFNEVEMPLIPVLAEMECNG 542 >gi|50949608|emb|CAH10568.1| hypothetical protein [Homo sapiens] Length = 272 Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 99 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130 K+ D + L +G+ VR + + R N LK + +L Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A+ L+++Q+ YAA D AL L Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257 >gi|83285930|ref|XP_729939.1| 3'-5' exonuclease [Plasmodium yoelii yoelii str. 17XNL] gi|23489160|gb|EAA21504.1| 3'-5' exonuclease, putative [Plasmodium yoelii yoelii] Length = 284 Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 21/149 (14%) Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-----RTYTNQHGLKD 121 ++ ++K K+ H R D + L+ ++ V+ T A L Q + Sbjct: 32 KKIIENKKTLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLLLEKKKENDIYQISFLN 91 Query: 122 NLKELLGINIS-----KAQQSSD---WSADDLSDEQLQYAASDVVHLHALR---LQFTEK 170 L + LG+ K + + W LS + YA +V +L + + K Sbjct: 92 LLHDYLGVKDDCLNNIKKEMYKNEKIWEIRPLSKISIIYALKNVKYLLPIYKIFDKLVSK 151 Query: 171 LQRLGRS-DLATSCCNFLMDRAEL--DLL 196 + L +S D C L R +L DL Sbjct: 152 KEVLEKSKDFVNYCF--LNSRYKLPVDLA 178 >gi|297808445|ref|XP_002872106.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp. lyrata] gi|297317943|gb|EFH48365.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp. lyrata] Length = 508 Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 31/181 (17%) Query: 23 IAVDTET---LGLMPRRDRLCIVQLS-------PGDGTVDIIRIAAGQKNAPNLVGML-- 70 IA+D E + ++Q++ D D+ I + P++ +L Sbjct: 31 IALDAEWKPQHSNTSSFPTVTLLQVACRLSYATDDDEVSDVFLIDLTSIHLPSVWELLNE 90 Query: 71 --VDEKREKI-FHYGRFDIAVLFYTF---GVR-----------VRPVFCTKIASRLTRTY 113 V K+ F + + D+ L TF G + ++ R R Sbjct: 91 MFVSPDVLKLGFRF-KQDLVYLSSTFTQHGCEGGFQEVKQYLDITSIYNYLQHKRFGRKA 149 Query: 114 TNQH-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L KE+L I++SK Q SDWS L++EQ YAA+D L + F L Sbjct: 150 PKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFKAHLV 209 Query: 173 R 173 Sbjct: 210 E 210 >gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1] Length = 704 Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Query: 89 LFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDL 145 L GV V P+F T IA+++ + G K ++ LG+ + K Q+SDWS+ L Sbjct: 184 LQSDGGVFVSGPLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHL 243 Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 S EQL YAA D L L+ + +KL+ ++ L ++L G Sbjct: 244 SQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNG 295 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKIFH 80 VD ET GL P R+ ++QL+ D + + A ++P L +L + K+FH Sbjct: 2 GVDVETTGLDPFSARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLASPRIRKVFH 61 Query: 81 YGRFDIAVLFYTFGV 95 G+FD+ G+ Sbjct: 62 NGQFDL-CFLAAAGL 75 >gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49] gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49] Length = 704 Score = 80.4 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Query: 89 LFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDL 145 L GV V P+F T IA+++ + G K ++ LG+ + K Q+SDWS+ L Sbjct: 184 LQSDGGVFVSGPLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHL 243 Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 S EQL YAA D L L+ + +KL+ ++ L ++L G Sbjct: 244 SQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNG 295 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKIFH 80 VD ET GL P R+ ++QL+ D + + A ++P L +L + K+FH Sbjct: 2 GVDVETTGLDPFSARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLASPRIRKVFH 61 Query: 81 YGRFDIAVLFYTFGV 95 G+FD+ G+ Sbjct: 62 NGQFDL-CFLAAAGL 75 >gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG] Length = 704 Score = 80.4 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Query: 89 LFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDL 145 L GV V P+F T IA+++ + G K ++ LG+ + K Q+SDWS+ L Sbjct: 184 LQSDGGVFVSGPLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHL 243 Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 S EQL YAA D L L+ + +KL+ ++ L ++L G Sbjct: 244 SQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNG 295 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKIFH 80 VD ET GL P R+ ++QL+ D + + A ++P L +L + K+FH Sbjct: 2 GVDVETTGLDPFSARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLASPRIRKVFH 61 Query: 81 YGRFDIAVLFYTFGV 95 G+FD+ G+ Sbjct: 62 NGQFDL-CFLAAAGL 75 >gi|72093228|ref|XP_791289.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115974338|ref|XP_001181064.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 943 Score = 80.4 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 29/167 (17%) Query: 13 AECAARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPN--- 65 A+ ++ + +D E ++ + Q++ + + A + Sbjct: 415 ADITSKQNPMVGIDME--WRPSFSPTQKSKVALCQIATHETAYLLDMTALWVSETKDIVK 472 Query: 66 --LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 +L E+ K+ DI RP + HGL D + Sbjct: 473 DFFQQLLQSEEILKLGEEA--DI------LKEIPRP----------GNSRIGSHGLTDLV 514 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G + K + SDW L Q+ YAA D L + EK Sbjct: 515 HYCFGKYLDKRDRISDWERRPLRQAQMIYAALDAFCLLEVYAYLKEK 561 >gi|323700422|ref|ZP_08112334.1| 3'-5' exonuclease [Desulfovibrio sp. ND132] gi|323460354|gb|EGB16219.1| 3'-5' exonuclease [Desulfovibrio desulfuricans ND132] Length = 204 Score = 80.0 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 12/169 (7%) Query: 7 HEGDIP-AECAARYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 E D+ A R + DTET G P ++QL+ + + ++ Sbjct: 38 TESDLEQALSGMRASSLLGFDTETRPVFKKGKKPGPP--SLLQLATAE-CAYVFQLGVLP 94 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + + +L + + K R DI L + ++S + HGL+ Sbjct: 95 LDK-GVCDILANRRILKTGVAVRDDILGLQKHARFKPSGFVD--LSSITAKYNLQTHGLR 151 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + LLG ISK+ Q S+W+ D LS +Q+ YAA+D L L E Sbjct: 152 NMAANLLGFRISKSAQCSNWAKDKLSRQQVLYAATDAWISRELYLALEE 200 >gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] Length = 894 Score = 80.0 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 69/203 (33%), Gaps = 32/203 (15%) Query: 7 HEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------- 56 H+ + A A R A +AVDTET L P + RL V L DG + Sbjct: 298 HQEQLAA-LAERLAGASLVAVDTETDSLDPLKARLVGVSLCTEDGEAWYLPCGHRDEAGE 356 Query: 57 -----AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG---VRVRPVFCTKIASR 108 + L +L KI H +FD+AVL P+ T I + Sbjct: 357 LVAGQLPLDRLIEFLRPVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPLHDTMIGAW 416 Query: 109 LTRTYTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVH 159 L + L D E+ + + K++ + + L + Y+ DV Sbjct: 417 LLAPDRRTYKLDDLCGEI-NLRMTSYEEVTHADKSEDA--FCRVPL-EAAKNYSCEDVYG 472 Query: 160 LHALRLQFTEKLQRLGRSDLATS 182 L + +L+R L Sbjct: 473 ALRLYQEQLPQLERADLLALLRE 495 >gi|260802943|ref|XP_002596351.1| hypothetical protein BRAFLDRAFT_215559 [Branchiostoma floridae] gi|229281606|gb|EEN52363.1| hypothetical protein BRAFLDRAFT_215559 [Branchiostoma floridae] Length = 503 Score = 80.0 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 48/204 (23%) Query: 13 AECAARYVDAIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQ-----K 61 A+ + + +D E P R+ IVQL+ D + IA Q K Sbjct: 27 AQRLLQPGTMVGLDAE---WRPSFGNTLITQRVSIVQLAIKDKVYILDMIALVQNTEMGK 83 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV--------------------- 100 +L + I + D +L ++ + Sbjct: 84 LQDFFSSLLASQDVIIIGYGIDGDFQMLGRSYPFLREALSKRKSVIDLSHVHKANPALLT 143 Query: 101 FC---------TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ 151 F T AS ++ HGL +++ LG+ ++K +Q SDW L Q+ Sbjct: 144 FDAGETTDDDFTGEASA----KSDAHGLSQLVQQCLGLPLAKTEQLSDWERRPLRKAQIL 199 Query: 152 YAASDVVHLHALRLQFTEKLQRLG 175 YA+ D L + T++++ G Sbjct: 200 YASLDAYCLLEVYDVLTKRVKDAG 223 >gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1] gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1] Length = 978 Score = 80.0 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 29/185 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------A 58 AR +A+DTET L P + LC + L+ + ++ Sbjct: 384 ARETGVVALDTETTSLDPMQAELCGIALATAPNRAAYLPLSHKNGAEDLLGGGMVDGQIR 443 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 ++ L +L D KI ++D +L+ G+ + P T + S + T HG Sbjct: 444 VEEALAVLRPLLQDPSVLKIGQNLKYDWVLLYRH-GIEIAPYDDTMLISYVLEAGTQAHG 502 Query: 119 LKDNLKELLGINIS--KAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEK 170 + + LG K S ++ + + YA+ D L + Sbjct: 503 MDALAERWLGHTPVSYKEVTGS--GRSKVTFDMVGLERATVYASEDADVTLRLWKVLKPQ 560 Query: 171 LQRLG 175 L G Sbjct: 561 LAAKG 565 >gi|212704372|ref|ZP_03312500.1| hypothetical protein DESPIG_02427 [Desulfovibrio piger ATCC 29098] gi|212672197|gb|EEB32680.1| hypothetical protein DESPIG_02427 [Desulfovibrio piger ATCC 29098] Length = 201 Score = 80.0 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 8/160 (5%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 A + + DTET R+ R+ +VQL+ V +++++ P L G+ Sbjct: 39 ALPDLQQEQVLGFDTET-RPSFRKGRVNTPSLVQLATA-RAVYLVQLSWW-PFGPELAGL 95 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K D+ L + + + + +R GL+ L G Sbjct: 96 LADPAVIKAGVAIGDDMRELARLYPFKPAGMVDLGMVAR--AHQLTTQGLRTLAANLFGQ 153 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 ISK Q S+WS +LS Q+ YAA+D A+ L+ E Sbjct: 154 RISKGPQCSNWSVMELSKRQVIYAATDAWIGRAIYLRMRE 193 >gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] Length = 920 Score = 80.0 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 21/196 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDE 73 R +++DTET P L + + + + I + ++ A +V + + Sbjct: 345 RTKSILSLDTETTSTNPIDAELVGLSFAVEEKKAFYVPIPSNRQEAQKIVNIFKPIYENP 404 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---IN 130 K+ ++D+ VL +F T +A + + +H + + LL I+ Sbjct: 405 DILKVGQNLKYDLEVLHNYGVTLKGKMFDTMLAHYVIQPEL-RHNMDYMAETLLNYRTIH 463 Query: 131 IS-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 I K Q+ S +L +++ +YAA D L+ KL+ + DL + Sbjct: 464 IDELIGPRGKNQK----SMRELDPKEVYEYAAEDADITLQLKNVLETKLKEMECEDLFWN 519 Query: 183 -CCNFLMDRAELDLLG 197 + AE+++ G Sbjct: 520 IEMPLMPVLAEIEMNG 535 >gi|194743424|ref|XP_001954200.1| GF18156 [Drosophila ananassae] gi|190627237|gb|EDV42761.1| GF18156 [Drosophila ananassae] Length = 586 Score = 80.0 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 8/159 (5%) Query: 18 RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + D E T+G RR + ++QLS G + R+ ++ +L +L D+ Sbjct: 75 QKFKVLGFDCEWITVGG-SRRP-VALLQLSSHQGLCALFRLCHMKQIPKDLRELLEDDAV 132 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ + D L + +GV V + + GL L + K Sbjct: 133 IKVGVAPQEDAMKLSHDYGVGVASTLDLRFLCVMAGHKPE--GLGKLSFRHLDYPLDKNW 190 Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + S+W A L QL YAA+D + A+ + L+ Sbjct: 191 RLACSNWEAKQLEPPQLNYAANDALVAVAIYEKLCRDLE 229 >gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW] gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW] Length = 987 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 58/191 (30%), Gaps = 35/191 (18%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------ 64 AR +AVDTET GL P L + LS G I + P Sbjct: 390 AREAGTVAVDTETDGLTPVSAGLVGISLSVEPGRACYIPVQHIDPATPKGATGGLDLGGT 449 Query: 65 --------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 L +L D K+ +FD + G+ + P+ T + S + Sbjct: 450 PPPPPQIALADALARLKPLLEDPAVLKVGQNVKFDWQIFARH-GIAMAPIDDTMLISYVL 508 Query: 111 RTYTNQHGLKDNLKELLGINISK-------AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 T + HG+ + LG K + + L YAA D L Sbjct: 509 GTGLHGHGMDELALRHLGHTTIKYDEVTGTGKSRITFDRVPLDKA-RDYAAEDADITLRL 567 Query: 164 RLQFTEKLQRL 174 L R Sbjct: 568 HRVLKHDLVRQ 578 >gi|149542235|ref|XP_001510635.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 692 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 54/212 (25%) Query: 14 ECAARYVDAIAVDTE------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----- 62 + + + +D E + + R+ I+Q++ + + + Sbjct: 345 DVVLQAGQVVGIDMEWKPSFGAVR----KPRVSILQMAVEGHVFLLDLLEVSKPEDRRGE 400 Query: 63 -------APNLVGMLVDEKREKIFHYGRFDIAVL------FYTFGVRVRPVFCT-KIASR 108 A + + +D K+ + D+ L +V+ V +I + Sbjct: 401 EEENEAFAHFIQELYLDPSITKLGYGMLGDLRNLASSGPALRDLDKQVQGVLDLFQIDKQ 460 Query: 109 LTRTYTNQH-------------------------GLKDNLKELLGINISKAQQSSDWSAD 143 L + + GL ++ +LG + KA+Q SDW Sbjct: 461 LQKRPGQRKKSSRPVDVLAQDPGPEARGAKRAEKGLSLLVQRVLGKPLDKAEQLSDWERR 520 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L Q+ YAASD L + + R G Sbjct: 521 PLRPAQILYAASDAYCLLEVYRALCDDPARFG 552 >gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] Length = 921 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 25/207 (12%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63 + D+ + + A DTET G+ P + +V +S + + + A A Sbjct: 337 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEAAK 392 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + K KI +FDI VL P+F T IA L +HG+ Sbjct: 393 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 451 Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171 + L ++I K + Q S ++ EQ+ +YAA D L+ F +L Sbjct: 452 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADITLKLKNYFAPEL 508 Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197 ++ G L T+ + E++ G Sbjct: 509 KKEGLESLFTTIEMPLIYVLVEMEATG 535 >gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] Length = 892 Score = 79.7 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 69/202 (34%), Gaps = 25/202 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L P + RL + L+ I + + AP L Sbjct: 310 LEKASCFAFDTETTALDPMKARLVGISLALEPDEAFYIPVGHAYEGAPVQLDRDAVLRIL 369 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + K KI ++D VL PVF T IA+ L +GL + Sbjct: 370 APAFENTKITKIGQNVKYDWTVLSRCGFKIDGPVFDTMIAAYLLNPTRRSYGLDRLAADY 429 Query: 127 LGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L + D +SA L + + YAA D +L ++L++ G Sbjct: 430 LNHRM---ISYQDVTGTGKNAKCFSAVPLEEA-IPYAAEDADITFSLHRLLEKELKQGGL 485 Query: 177 SDLATS-CCNFLMDRAELDLLG 197 +L + + +++ G Sbjct: 486 FELLETIEMPLVPVLMHMEMAG 507 >gi|145344201|ref|XP_001416625.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576851|gb|ABO94918.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 614 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 39/183 (21%) Query: 23 IAVDTE--------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----ML 70 I +DTE ++ +QL+ DG + Q L M Sbjct: 415 IGIDTEWGAAVGEDADKEDT--SQVATLQLASEDGVAILDLPVLVQSCPEALEATIGRMF 472 Query: 71 VDEKREKIFHYGRFDIAVLFY----TFGVRVRPVFCTK----IA---SRLTRTYTN---- 115 D+K K+ + D+ L +FG VR V + +A +R+T+ + Sbjct: 473 QDDKVLKLGFAVQEDLRRLAKCHPASFG-NVRNVADLQSLWKLAVSKARMTKETRDFPWA 531 Query: 116 ---------QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 GL + +LG + K + SDWS L+ +Q YAA D L Sbjct: 532 TDEELSRYQPVGLSTMVAAVLGKPLDKTMRMSDWSKRPLTAQQRVYAALDAWTLVESHRS 591 Query: 167 FTE 169 Sbjct: 592 LLA 594 >gi|270003369|gb|EEZ99816.1| hypothetical protein TcasGA2_TC002596 [Tribolium castaneum] Length = 1249 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 32/178 (17%) Query: 17 ARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-----ML 70 + V+ + +D E +++ L ++Q++ V I+ I + P+L + Sbjct: 775 LQDVEVVGIDCEWKPNFGSQKNELALMQIASRK-NVFILDIISIGTKVPHLWQELGKFLF 833 Query: 71 VDEKREKIFHYGRFDIAVLFY---TFGVRVRPVFCTKIA--------------SRLTRTY 113 + K+ DI ++ + + ++ ++ Y Sbjct: 834 NNCDILKLGFGFTSDILMIKHSLPELNFTPK-----QVGFLDLLSLWKLLEKYPKVVLPY 888 Query: 114 ---TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + L + + LG + K+ Q S+W L + QL YAA D L + Sbjct: 889 EVQGSGPSLGTLVNQCLGRPLDKSDQFSNWEKRPLRNSQLVYAALDAYCLIEVYDVIK 946 >gi|149737205|ref|XP_001500327.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 2 [Equus caballus] Length = 620 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 13/159 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 103 LEDFPVLGIDCEWV-----TSPLSLLQMASPSGFCVLVRLPKLVCGGKTLPKTLLDILAD 157 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130 + K+ D + L +G+ V+ + + R N LK + +L Sbjct: 158 DTILKVGVGCSEDASKLLQDYGLVVKGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 217 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A++L+++Q+ YAA D AL L Sbjct: 218 LDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLHL 256 >gi|15237941|ref|NP_197822.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] gi|10177895|dbj|BAB11227.1| unnamed protein product [Arabidopsis thaliana] gi|30102678|gb|AAP21257.1| At5g24340 [Arabidopsis thaliana] gi|110743600|dbj|BAE99637.1| hypothetical protein [Arabidopsis thaliana] gi|332005912|gb|AED93295.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] Length = 505 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 28/178 (15%) Query: 23 IAVDTET---LGLMPRRDRLCIVQ----LSPGDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 IA+D E + ++Q LS D+ I + P++ +L D Sbjct: 31 IALDAEWKPQHSNTSSFPTVTLLQVACRLSHATDVSDVFLIDLSSIHLPSVWELLNDMFV 90 Query: 73 -EKREKI-FHYGRFDIAVLFYTF---GVR-----------VRPVFCTKIASRLTRTYTNQ 116 K+ F + + D+ L TF G + ++ R R Sbjct: 91 SPDVLKLGFRF-KQDLVYLSSTFTQHGCEGGFQEVKQYLDITSIYNYLQHKRFGRKAPKD 149 Query: 117 H-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L KE+L I++SK Q SDWS L++EQ YAA+D L + F L Sbjct: 150 IKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVE 207 >gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] Length = 979 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 26/193 (13%) Query: 9 GDIPAECA-ARYVDAIAVDTETLGLMPRRDRL------------CIVQLSPGDGTVDIIR 55 D+ A AR +AVDTET L P + RL C + L G G Sbjct: 377 ADLDEWIARAREQGFLAVDTETDSLFPMQARLVGVSLSLLPGEACYIPLQHGAGGGLDFA 436 Query: 56 IAAGQKNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 A GQ P L +L D KI +FD+ VL G++++ + T + S Sbjct: 437 DAGGQPQIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQH-GIQLKGLDDTMLMSYA 495 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHAL 163 + HG+ + + LG + + ++ +Q+ YAA D L Sbjct: 496 LDAGVHGHGMDELSELHLGHKPISFAEVAGKGKAQITFDQVPVDRATAYAAEDADVTLRL 555 Query: 164 RLQFTEKLQRLGR 176 +L R Sbjct: 556 WHILKPRLVAERR 568 >gi|66816197|ref|XP_642108.1| 3'-5' exonuclease domain-containing protein [Dictyostelium discoideum AX4] gi|60470232|gb|EAL68212.1| 3'-5' exonuclease domain-containing protein [Dictyostelium discoideum AX4] Length = 718 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 7/136 (5%) Query: 35 RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94 ++ ++QLS + T I +++ +K +L +L D + K+ D A +F TF Sbjct: 220 YNHKVALIQLSSKNETFLI-QVSQMEKIPTSLEQILTDPRLIKVGVAVSQDAATIFQTFS 278 Query: 95 VRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 V + IA RLT N GL ++ + + K+ + S W DL+++Q+ Sbjct: 279 VVTKGCVDLVPIA-RLTNYEGN--GLASLALNVMNVTLDKSNLIRCSHWENKDLTNDQIH 335 Query: 152 YAASDVVHLHALRLQF 167 YAA+D + Sbjct: 336 YAAADAWVGREIFEIM 351 >gi|198423738|ref|XP_002125788.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 [Ciona intestinalis] Length = 572 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 5/146 (3%) Query: 17 ARYVDAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEK 74 +Y I D E + + + ++QL+ G +IR++ + P L +L D Sbjct: 78 LQYAKVIGFDCEWTS-KSGKPQPVALLQLATVSGVCLLIRLSHYRGPLPVRLQSILSDAS 136 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+ D L + +G+ V + + T+ N GLK + LG+ ++K Sbjct: 137 YIKVGVGPMEDANKLLHDYGIVVSGCVDLRSLAVRTKETKNSLGLKGLAQSYLGVTMNKQ 196 Query: 135 Q--QSSDWSADDLSDEQLQYAASDVV 158 + Q S W A LS EQ+ YAA+D + Sbjct: 197 KHIQCSAWDAPSLSQEQIDYAANDAL 222 >gi|188995460|ref|YP_001929712.1| probable 3'-5' exonuclease [Porphyromonas gingivalis ATCC 33277] gi|188595140|dbj|BAG34115.1| probable 3'-5' exonuclease [Porphyromonas gingivalis ATCC 33277] Length = 200 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 17/174 (9%) Query: 3 TIRVHEGDIPAECAARYVDA---IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIR 55 TI + + A R + A I DTE + R + ++Q+S D Sbjct: 21 TIHLIDKPQAIPEAIRLLSASRTIGFDTETRPSFVRG--ARPSVALMQMSTET---DCFL 75 Query: 56 IAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 + P L +L + K+ D+ V+ + + RL Y Sbjct: 76 FRLNMIDIPEELQQLLENPGILKVGLSLSDDMTVIRRRKPIEPAGFVELQ---RLCPAYG 132 Query: 115 NQ-HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + L+ L G ISK+Q+ ++W A L+ Q YAA D + Q Sbjct: 133 IRDASLQKIYAILFGRRISKSQRLTNWEARTLTAAQQSYAALDAWACLRIFNQL 186 >gi|324504376|gb|ADY41890.1| Exonuclease mut-7 [Ascaris suum] Length = 953 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 50/208 (24%) Query: 18 RYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAG---QKNAPNLVG 68 + I +DTE L + +++ ++Q+S VD++++ ++ Sbjct: 436 KTSSIIGIDTEWKPMFLSTV---EQVALLQVSIPSCSYLVDVVKLEDEVSEEEWIEFFKA 492 Query: 69 MLVDEKREKI-FHYGRFDIAVLFYTFGVR------VRPVFC-----TKIA----SRLTRT 112 + E K+ F + D+ VL TF ++ V C T + + L Sbjct: 493 LFCTESSIKLGFDFAN-DMRVLRATFPFLESMQPDMKNVICIMKLATSLMSENSASLDLP 551 Query: 113 YTNQHG---------------------LKDNLKELLGINISKAQQSSDWSADDLSDEQLQ 151 HG L D +LG + K +Q +W+ L EQ++ Sbjct: 552 TGEAHGSDSNENTTDESPSDEQQLHFKLTDLCYRILGEPLDKREQIGNWAMRPLRPEQMK 611 Query: 152 YAASDVVHLHALRLQFTEKLQRLGRSDL 179 YAA D L + + + + Sbjct: 612 YAAMDAYCLIKIYDRMKARATEEFGMNW 639 >gi|34540197|ref|NP_904676.1| 3'-5' exonuclease domain-containing protein [Porphyromonas gingivalis W83] gi|34396509|gb|AAQ65575.1| 3'-5' exonuclease domain protein [Porphyromonas gingivalis W83] Length = 188 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 17/174 (9%) Query: 3 TIRVHEGDIPAECAARYVDA---IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIR 55 TI + + A R + A I DTE + R + ++Q+S D Sbjct: 9 TIHLIDKPQAIPEAIRLLSASRTIGFDTETRPSFVRG--ARPSVALMQMSTET---DCFL 63 Query: 56 IAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 + P L +L + K+ D+ V+ + + RL Y Sbjct: 64 FRLNMIDIPEELQQLLENPGILKVGLSLSDDMTVIRRRKPIEPAGFVELQ---RLCPAYG 120 Query: 115 NQ-HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + L+ L G ISK+Q+ ++W A L+ Q YAA D + Q Sbjct: 121 IRDASLQKIYAILFGRRISKSQRLTNWEARTLTAAQQSYAALDAWACLRIFNQL 174 >gi|325120662|emb|CBZ56217.1| putative 3'-5' exonuclease domain-containing protein [Neospora caninum Liverpool] Length = 480 Score = 78.9 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P LV +LV +K ++ L FGV + C A+ TN L+ Sbjct: 28 PGLVSLLVRPDVQKATQGATGEVEALQREFGVAAKNFLCLHAAAIALGCATNSRSLQALC 87 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 L + K+ Q S WS D LS EQ YAA+D + +++ + L + Sbjct: 88 GVFLRSYLDKSLQLSTWSRDALSPEQCMYAATDAYVSRQVLFGMRDRINQKDVMRLVEAQ 147 Query: 184 CNFLMDRAE 192 L RA Sbjct: 148 -ATLQARAT 155 >gi|313674143|ref|YP_004052139.1| 3'-5' exonuclease [Marivirga tractuosa DSM 4126] gi|312940841|gb|ADR20031.1| 3'-5' exonuclease [Marivirga tractuosa DSM 4126] Length = 194 Score = 78.9 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 10/160 (6%) Query: 19 YVDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + + DTE + + + + ++QL+ + I + G +LV + D Sbjct: 42 KAEILGFDTEAKPVFKKGQYNPVSLIQLATEEEVFLIRNLMCGFHG--DLVRIFEDPSII 99 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K D+ L R I S + Q G K+ L ISKAQQ Sbjct: 100 KTGAAIHDDLKDLQKLRKFRPEGFED--IGSIARQNGMLQSGAKNLTAIFLNKRISKAQQ 157 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 +S+W +L+ Q+ YAA+D + F +R+G Sbjct: 158 TSNWEKSELTQAQIDYAATDAYLGLKVYEVF----ERIGW 193 >gi|170051623|ref|XP_001861848.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872804|gb|EDS36187.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 925 Score = 78.9 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 23/185 (12%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK---NAPNLVGMLVD 72 +A D+E + + ++QL+ D V ++ + Q + L + Sbjct: 448 DLSQQSLVAFDSEWKPTFGGANEVAVIQLATRDD-VYLVDVLVSQLQGSDWSELASVFNR 506 Query: 73 EKREKIFHYGRFDIAVLFYT---FGVRVRP-----VFCTKIASRLT----------RTYT 114 + K+ D + F V P + ++ R + Sbjct: 507 DDVLKLAFAPSTDFNMFQKALPAFNVSYGPQSGSTILDLQVLWRKVDAIKSFQFPFKEEI 566 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L + K LG + K+ Q S+W+ L EQ+QYAA D L + ++L+ Sbjct: 567 TNQNLSNLSKLCLGKKLDKSNQFSNWAQRPLRREQIQYAALDAYVLLQIYDVIAKQLKAA 626 Query: 175 GRSDL 179 R DL Sbjct: 627 -RIDL 630 >gi|261880482|ref|ZP_06006909.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332821|gb|EFA43607.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 253 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 65/169 (38%), Gaps = 17/169 (10%) Query: 20 VDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 D + VDTET R ++C++Q+S D G P + +L D + Sbjct: 45 SDILGVDTET-RPSFHRGEQHQVCLLQVSNRDTCFLFRLHLTGIT--PAIKRLLEDTTVK 101 Query: 77 KI---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINIS 132 KI +H DI L + I + L+ G IS Sbjct: 102 KIGLSWHD---DIRGLQARENFTPGLFVDLQDI---VPELGVKDLSLQKLYANFFGKKIS 155 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 K Q+ S+W A LSD+Q QYAA D L + T +L+R +L Sbjct: 156 KRQRLSNWEAAVLSDKQKQYAAIDAWSCIHLYEEIT-RLKRTHDYELIE 203 >gi|303284617|ref|XP_003061599.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456929|gb|EEH54229.1| predicted protein [Micromonas pusilla CCMP1545] Length = 1174 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 52/158 (32%), Gaps = 37/158 (23%) Query: 41 IVQLSPGDGTVDIIRIAAGQKN---APNLVGMLVDEKR--------------------EK 77 +VQL+ G V + +A + A L +L + Sbjct: 532 LVQLAGERGVVLVDMLALRSSSVEVAAALRAILTAPRIRTAAGASERELERHLIKTPPTV 591 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCT--KIASRLT-----RTYTNQHGLKDNLKELLGIN 130 + R D L P+ +AS L ++ GL + LG Sbjct: 592 VGWGLRDD---LSRLAASYPGPIADAVRDVASALCLQELSGPRGHRPGLSAACEAWLGRG 648 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASD----VVHLHALR 164 + K+Q +SDWS L+ QL YAA D V L Sbjct: 649 LDKSQTTSDWSRRPLTAAQLAYAAQDARVCVRLLREAH 686 >gi|53712323|ref|YP_098315.1| hypothetical protein BF1031 [Bacteroides fragilis YCH46] gi|60680496|ref|YP_210640.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343] gi|253563640|ref|ZP_04841097.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|52215188|dbj|BAD47781.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60491930|emb|CAH06690.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343] gi|251947416|gb|EES87698.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301162033|emb|CBW21577.1| putative 3'-5' exonuclease [Bacteroides fragilis 638R] Length = 216 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 17/178 (9%) Query: 13 AECAARYVDAIAVDTETLGLMP--RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A + + +D+ET ++ ++Q+S D + R+ P ++ +L Sbjct: 36 AVAYLQSQAILGIDSETRPSFTKGHSHKVALLQISS-DECCFLFRLNMTGLTQP-IIELL 93 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD-NLKELLGI 129 D K K+ + D +L + A + Y G++D +L+++ GI Sbjct: 94 EDPKVIKVGLSLKDDFMMLHKRA---PFN----QQACIELQEYVRPFGIQDKSLQKIYGI 146 Query: 130 ----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ISK+Q+ S+W AD L+D Q QYAA+D + E+L+R G +LA Sbjct: 147 LFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH-LLEELKRTGNYELAPEE 203 >gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31] gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31] Length = 973 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 63/196 (32%), Gaps = 51/196 (26%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA------------- 63 A +A DTET L LC V L+ G I + +K+ Sbjct: 380 ATAKGIVAFDTETDALSSATAGLCGVSLAISPGEACYIPVGHCEKDGLALEAAADLVQVP 439 Query: 64 -----PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L +L D KI ++DIAVL G+ V P+ T + S + + HG Sbjct: 440 MEEVIAALKPLLEDPAVLKIAQNAKYDIAVLARY-GINVGPIEDTMLISYVLEAGLHGHG 498 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQL-------------------QYAASDVVH 159 + + + LG +S +Q+ YAA D Sbjct: 499 MDELSELWLGHK-------------PISFKQVAGSGKGQISFKHVGLAEATAYAAEDADV 545 Query: 160 LHALRLQFTEKLQRLG 175 L +L R G Sbjct: 546 TLRLYNVLKPRLAREG 561 >gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 923 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 23/194 (11%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76 D +++DTET G P +L + S + + I + A + DE+ Sbjct: 351 DFLSLDTETTGTDPISAKLVGLSFSVEENQAFYVPIPQDFEEAQKIVNEFKSVYEDERIL 410 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 KI ++D+ VL +F T IA L + +HG+ + L I+I Sbjct: 411 KIGQNIKYDLMVLQNYGITLKGEIFDTMIAHYLLQPEL-RHGMDYLAEVYLNYQTIHIEE 469 Query: 133 ------KAQQS-SDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 K Q++ +D L Q+ +YA D L+ F KL+ G DL Sbjct: 470 LIGPKGKNQKNMAD-----LPPSQVYEYACEDADITLKLKNVFEPKLKEEGCYDLFREVE 524 Query: 184 CNFLMDRAELDLLG 197 + A ++ G Sbjct: 525 MPLMPVLAWMERNG 538 >gi|289758809|ref|ZP_06518187.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis T85] gi|289714373|gb|EFD78385.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis T85] Length = 277 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 24/55 (43%) Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 K ++DWS L L YAA DV L LR + L G++D A L Sbjct: 2 KGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHL 56 >gi|265762514|ref|ZP_06091082.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255122|gb|EEZ26468.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 216 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 21/180 (11%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + +D+E ++ ++Q+S D + R+ P ++ Sbjct: 36 AVVYLQSQTILGIDSETRPSFTKGHSH--KVALLQISS-DECCFLFRLNMTGLTQP-IIE 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD-NLKELL 127 +L D K K+ + D +L + A + Y G++D +L+++ Sbjct: 92 LLEDPKVIKVGLSLKDDFMMLHKRA---PFN----QQACIELQEYVRPFGIQDKSLQKIY 144 Query: 128 GI----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 GI ISK+Q+ S+W AD L+D Q QYAA+D + E+L+R G +LA Sbjct: 145 GILFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH-LLEELKRTGNYELAPEE 203 >gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] Length = 889 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 22/215 (10%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T E D+ A A+DTET GL P + L + S + Sbjct: 292 TALTTEEDLEALAENLEKAGVFALDTETTGLDPMQASLVGMSFSYEADRAFYAPLTHDYL 351 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 AP+ L +L + + +KI ++D VL G ++ V F T +AS L Sbjct: 352 GAPDQVGVEKALEILGPVLSNPEIKKIGQNIKYDWIVLARH-GADLQGVAFDTMVASYLL 410 Query: 111 RTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL ELL + K ++ ++ L + YA D + Sbjct: 411 NPSHRSHGLDQIAMELLEHRMISYEEVCGKGAKAITFNQVPLEKA-VPYACEDADVTFQI 469 Query: 164 RLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 KL++ +L + + ++++ G Sbjct: 470 YGLLQPKLEKNQLLELFKTVEMPLVRVLVKMEMEG 504 >gi|167516320|ref|XP_001742501.1| hypothetical protein [Monosiga brevicollis MX1] gi|163779125|gb|EDQ92739.1| predicted protein [Monosiga brevicollis MX1] Length = 880 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 35/145 (24%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE R ++Q++ GD + + A Sbjct: 739 VGIDTE---WRSPRPTCSLIQVAMGDDVFLLDAVPGMGDAA------------------- 776 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 V + ++ + GL + +LG + K Q S+W Sbjct: 777 -------------YAYEVVDVQPLAQSWLQRKKRPGLGTVVAAVLGQTLDKRNQCSNWDR 823 Query: 143 DDLSDEQLQYAASDVVHLHALRLQF 167 L +Q +YAA D L L Q Sbjct: 824 RPLRPDQAEYAAIDAWCLAPLYEQL 848 >gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] Length = 972 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 77/212 (36%), Gaps = 26/212 (12%) Query: 7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--AAGQKNA 63 + D+ A A +A DTET G+ P RD L + L+ G I + G+ Sbjct: 371 TDADLEAVVAELATAPLVAFDTETRGMNPLRDDLVGLSLATVPGRAWYIPVGHTTGEMQL 430 Query: 64 P------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116 P L D R K+ H +FDI VL G+ V + F T +A+ L + Sbjct: 431 PRDRVIAALRSFFADPARPKVAHNAKFDIEVLERA-GMPVAGLSFDTMLAAGLLD---KR 486 Query: 117 HGLKDNL--KELLGINIS-------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 LKD + L + K + ++ ++ +YAA+D L+ Sbjct: 487 RNLKDLAFYELELAEPLDAIGDLIGKGKNQVTFAEVPIARA-TRYAAADADMTLRLQPAL 545 Query: 168 TEKLQRLGRSD--LATSCCNFLMDRAELDLLG 197 KL+ G + ++ G Sbjct: 546 EAKLRAAGSLADMFYRLEMPLVPVLVRMEQSG 577 >gi|291514664|emb|CBK63874.1| Ribonuclease D [Alistipes shahii WAL 8301] Length = 202 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 66/174 (37%), Gaps = 17/174 (9%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAA 58 I HE DI A C I DTET R R+ ++QLS + R+ Sbjct: 30 IVEHERDIAAACKTLAEQPVIGFDTET--RPSFRPGVTFRVSLLQLSTP-TVCYLFRLNK 86 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTN 115 P L +L D + KI D+ L R + IA Sbjct: 87 IPLAKPIL-QLLEDRRILKI--GADVAGDLRSLRQIRHFRDGGFVDLQGIA---PEWGIG 140 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + L+ +LG +SKAQ+ S+W A L+D+Q YAA+D + Q Sbjct: 141 EKSLRKLSAIVLGRRVSKAQRLSNWEAATLTDKQQLYAATDAWVCTRIYEQLLR 194 >gi|124800774|ref|XP_001349559.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7] gi|3845126|gb|AAC71832.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7] Length = 416 Score = 78.9 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 18/157 (11%) Query: 23 IAVDTETLGLMPR-RDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 I +D E G + I+Q+ D DI + + +L + K+ H Sbjct: 77 IGLDIE--GYKIGKYGIVSIIQICYEDIYIFDIYKCDNVYLFINYIKDILECDDIIKVTH 134 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIA------SRLTRTYTNQHGLKDNLKELL------G 128 R D ++L+ + + ++ + T++A + T T Q D LK+ L Sbjct: 135 DCREDCSILYNQYNIHLKNILDTQVAYNLLLKNNNNYTNTYQISYDDLLKKYLFINNNHK 194 Query: 129 INISKAQQSSD--WSADDLSDEQLQYAASDVVHLHAL 163 I K + + + E + YA DV++L L Sbjct: 195 IYFHKMITLDNYIYLKRPIMKELISYAIQDVIYLKPL 231 >gi|289743269|gb|ADD20382.1| putative salivary expressed 3'-5' exonuclease [Glossina morsitans morsitans] Length = 339 Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 6/188 (3%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 R+ + D E + + R+ + ++QL+ +G + R+ +L +L D++ K Sbjct: 68 RHYKVLGFDCEWITVGRVRNPVALLQLASPNGFCGLFRLRHMHHIPESLKNLLRDKEIIK 127 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA--Q 135 + D L +G+ V F + + + R GL+ + LL ++ K Sbjct: 128 VGVDPAGDARKLQEDYGIYVASTFDIRYLAVMIRC--KPLGLEKLSRSLLNVDFVKRGYI 185 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE--L 193 S+W D L D+Q++YAA+D + +L+ + + + + + L Sbjct: 186 GRSNWEFDKLDDDQVEYAANDAFAGVEIFKHLANRLKPRNYWNFTNTDFMAIKSQIKYLL 245 Query: 194 DLLGWENV 201 DL E+ Sbjct: 246 DLDFSEDT 253 >gi|332882913|ref|ZP_08450520.1| 3'-5' exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679121|gb|EGJ52111.1| 3'-5' exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 206 Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 13/164 (7%) Query: 22 AIAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + VDTET R +++ ++Q+S D T + R+ +L DE K Sbjct: 46 VLGVDTET--RPSFRKGCTNKVALLQVST-DDTCFLFRLNHIGVTESV-KRLLQDENVLK 101 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINISKAQQ 136 + R D A L R + R + L+ + G ISK Q+ Sbjct: 102 VGLSLRDDFASLHKRGEFEPRAFLDLQ---DYVRAFGIEDMSLQKLYANIFGQKISKGQR 158 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++W AD L++ Q YAA+D L + E L+ +LA Sbjct: 159 LTNWEADVLTEGQKLYAATDAWACIRLYREL-ETLKENNDYELA 201 >gi|154494239|ref|ZP_02033559.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC 43184] gi|154086101|gb|EDN85146.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC 43184] Length = 193 Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 20/157 (12%) Query: 22 AIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 ++ DTE ++ ++Q+S + G A L L +EK K Sbjct: 47 SVGFDTETRPSFKKGQRY--KISLMQISTDEACFLFRLNRIGIPEA--LEEFLANEKVLK 102 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINIS 132 I R D + ++ + Y Q G L+ L IS Sbjct: 103 IGLSLRDDFGAMRKRTDIQPANFLD-------LQNYVGQFGIEDASLQKIYAILFNKKIS 155 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 K Q+ S+W AD LSD Q +YAA D + Q + Sbjct: 156 KGQRLSNWEADVLSDAQKKYAALDAWACLKIYNQLKQ 192 >gi|156363461|ref|XP_001626062.1| predicted protein [Nematostella vectensis] gi|156212924|gb|EDO33962.1| predicted protein [Nematostella vectensis] Length = 363 Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 3/137 (2%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 +QL+ + + P +L+ +L + + K+ D L + Sbjct: 113 LQLAVNHSCLVLHLFHMRLDLLPRSLLNVLGNIRILKVGSGISGDAVKLLRDTEILCNGR 172 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVV 158 T++ +++ + GLK K +LGI + K + S+W L+ EQ YAA D Sbjct: 173 SDTQVYAKVLALNQDGTGLKKLAKTILGIELDKPKYISLSNWELFPLTYEQASYAALDAW 232 Query: 159 HLHALRLQFTEKLQRLG 175 L ++ ++L + G Sbjct: 233 VSFKLFVELKQRLHKSG 249 >gi|74216614|dbj|BAE37741.1| unnamed protein product [Mus musculus] Length = 650 Score = 78.5 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 14/162 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + L + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 128 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCALVRLPRLIYGGRTLPRTLLDILAD 187 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127 K+ D L +G+ VR L N LK + +L Sbjct: 188 GAILKVGVGCSEDANKLLQDYGLIVRGCLD---LRYLAMKQGNNILCNGLSLKSLAETIL 244 Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + ++W A++L+++Q+ YAA D AL L Sbjct: 245 NFPLDKSLLLRCNNWDAENLTEDQVTYAARDAQISVALFLHL 286 >gi|301095852|ref|XP_002897025.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262108454|gb|EEY66506.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 414 Score = 78.5 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 16/176 (9%) Query: 15 CAARYVDA--IAVDTET---LGLMPRRDRLCIVQLSPGD----GTVDIIRIAAGQKNA-- 63 C+ R ++A + DTET RR+ ++Q++ D V I+ + Sbjct: 36 CSTRLLNAQVMGFDTETRPIWSKHQRRNPCALLQIAVRDANQKEEVFILDLLHLSAKVYN 95 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L + + + K+ D+ L + + V S N Sbjct: 96 TTLTNVFLSKTVVKLGQSFYQDLQELAESYPQASCFTVCKGVVEVNDLSISLAGAHNPLS 155 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L+ + L ++K QQ S+W+ L+ QL YAA+D + L L + ++Q+ Sbjct: 156 LQKLVFFYLHHKLTKTQQMSNWARRPLTPSQLHYAAADALVLIHLYDELLMRIQKQ 211 >gi|170094937|ref|XP_001878689.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645993|gb|EDR10239.1| predicted protein [Laccaria bicolor S238N-H82] Length = 532 Score = 78.5 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 22/181 (12%) Query: 7 HEGDIPAECAARYVDAIAVDTE----TL---GLMPRRDR-LCIVQLSPGDGTVDIIRIAA 58 HE + +++D E G +R + +VQ++ G V II+I Sbjct: 217 HEEEADDLVLGLKPGPVSLDLEWCFYFTKNKGTTTLNERRVAVVQVTDVCGMVLIIQIFG 276 Query: 59 GQKNAPNLVGMLVDEKREK----IFHYGRFDIAVLFYTFGVRVRPVFC----TKIASRLT 110 ++ NL ++ + K I D LF +G+ + + +A Sbjct: 277 MRRFPKNLQSLIENPNVPKMGVNIL----NDGKKLFRDYGILAQSLVELGALAMVADPAA 332 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSS-DWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + L +++ G + K + +W A L EQ+ YAA+D + + + Sbjct: 333 KRRRKMVSLAKLVEQYCGKLLEKGSIRTGNWEAK-LDQEQIDYAANDAHSTIQVYNELVK 391 Query: 170 K 170 Sbjct: 392 M 392 >gi|76628167|ref|XP_587937.2| PREDICTED: exonuclease 3'-5' domain containing 2 [Bos taurus] gi|297479852|ref|XP_002691029.1| PREDICTED: exonuclease 3'-5' domain containing 2 [Bos taurus] gi|296483016|gb|DAA25131.1| exonuclease 3'-5' domain containing 2 [Bos taurus] Length = 628 Score = 78.5 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 8/155 (5%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKRE 76 + +D E + + L ++Q++ G ++R+ G+ L+ +L D Sbjct: 110 PVLGIDCEWVNSEGKASPLSLLQMASPSGFCVLVRLPKLICGGKTLPKTLLDILADGTIL 169 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGINISKA 134 K+ D + L +G+ V+ + + R +N LK + +L + K+ Sbjct: 170 KVGVGCSEDASKLLQDYGLVVKGCLDLRYLAMRQRNNLLSNGLSLKSLSETVLNFPLDKS 229 Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + S+W A++L+++Q+ YAA D AL L Sbjct: 230 LLLRCSNWDAENLTEDQVIYAARDAQISVALFLHL 264 >gi|73963367|ref|XP_547872.2| PREDICTED: similar to Protein C14orf114 isoform 1 [Canis familiaris] Length = 623 Score = 78.5 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 22/166 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + R L ++Q++ G ++R+ G+ L+ +L D Sbjct: 101 LEDFPVLGIDCEWVNSEGRASPLSLLQMASPSGFCVLVRLPKLICGGKTLPKTLLDILAD 160 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT---------NQHGLKDNL 123 K+ D + L +G+ V+ R N LK Sbjct: 161 GTILKVGVGCSEDASKLLQDYGLVVKGCLD-------LRYLAVRQRNNLLCNGLSLKSLA 213 Query: 124 KELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + +L + K+ + S+W A++L+++Q+ YAA D AL L Sbjct: 214 ETVLNFPLDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLHL 259 >gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] Length = 923 Score = 78.1 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 23/194 (11%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76 D +++DTET G P +L + S + + I + A + DE+ Sbjct: 351 DFLSLDTETTGTDPISAKLVGLSFSVKENQAFYVPIPQDPEEAQKIVNEFKSVYEDERIL 410 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 KI ++D+ VL +F T IA L + +HG+ + L I+I Sbjct: 411 KIGQNIKYDLMVLQNYGITLKGEIFDTMIAHYLLQPEL-RHGMDYLAEVYLNYQTIHIEE 469 Query: 133 ------KAQQS-SDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 K Q++ +D L Q+ +YA D L+ F KL+ G DL Sbjct: 470 LIGPKGKNQKNMAD-----LPPSQVYEYACEDADITLKLKNVFEPKLKEEGCYDLFREVE 524 Query: 184 CNFLMDRAELDLLG 197 + A ++ G Sbjct: 525 MPLMPVLAWMERNG 538 >gi|24372736|ref|NP_716778.1| exonuclease, putative [Shewanella oneidensis MR-1] gi|24346805|gb|AAN54223.1|AE015559_7 exonuclease, putative [Shewanella oneidensis MR-1] Length = 261 Score = 78.1 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 60/166 (36%), Gaps = 10/166 (6%) Query: 13 AECAARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + DTET L +VQL+ D T + + A L Sbjct: 71 ALQQLSRESVLGFDTET--RASFEPSVQHPLSLVQLATAD-TCYLFQQAVLGDAFAQLKP 127 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L +E+ K+ R D L + + V P A + G + + LL Sbjct: 128 LLENEQILKVGIGLRGDGQALKRDWNILVSPRLDLNWAMAQLGA-GKEMGTRQLVAVLLH 186 Query: 129 INISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 I K S+W LS Q+QYAA D + + Q EKL+ Sbjct: 187 QRIDKPKKITLSNWQQVPLSPAQIQYAALDALAANHCFWQLIEKLR 232 >gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12] gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12] Length = 917 Score = 78.1 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 20/191 (10%) Query: 2 TTIRVHEG-DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 TTI HE D+ + A D IA+DTET L +L + + G + + Sbjct: 319 TTIYTHEELDLWIDKLA-NADLIAIDTETTSLNYMDAKLVGISFAIEAGKAAYLPLGHDY 377 Query: 61 KNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 +AP L +L + + +K+ ++DI++ G++++ + F T + S + Sbjct: 378 LDAPEQLDQAEALAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIAFDTMLESYV 436 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHAL 163 + +H + D + LG ++ + L+ Q+ YAA D L Sbjct: 437 FNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQIDLETAAPYAAEDADITLRL 496 Query: 164 RLQFTEKLQRL 174 +L++ Sbjct: 497 HQHLWPRLEKE 507 >gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] Length = 937 Score = 78.1 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 15/129 (11%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN------------ 62 AR +AVDTET L RL V LS G G I + G + Sbjct: 349 ADARAAHVVAVDTETASLDSVTGRLVGVSLSTGAGKACYIPLGHGGTDMFAEKPEQIAMG 408 Query: 63 --APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L + D+ K+ H ++DI VL GV V P T + S +QHGL Sbjct: 409 DALERLGALFADDAVLKVGHNLKYDIGVLAQH-GVTVAPYDDTLLMSFALDAGKHQHGLD 467 Query: 121 DNLKELLGI 129 + K L Sbjct: 468 ELAKLHLDH 476 >gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1] gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1] Length = 1027 Score = 78.1 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 22/211 (10%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA- 63 +E ++ A +A+DTET R L + ++ G I + A + Sbjct: 431 TNESELKALAVELAKQTVLAIDTETTSTHARGCDLVGISIAWQPGEAAYIPVRAPDGDPA 490 Query: 64 -------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTN 115 L +L EK+ H +FD+ VL + GV++ + T +A L + Sbjct: 491 INELIVIEILRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITMDTMVADYLLNSGGR 549 Query: 116 QHGLKDNLKELLGI-NIS-KAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167 HGL D + L N+S K + ++ +Q+ YA DV L Sbjct: 550 NHGLDDLAQRRLDHTNLSIKDLIGT--GKKQITMDQVPVDDVSPYACEDVDVPIRLAPTL 607 Query: 168 TEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 ++L G L AE++ G Sbjct: 608 RDELNESGLDGLFDEVEMPLTEVLAEMEFNG 638 >gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] Length = 921 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 17/179 (9%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65 A + D A+DTET L + L V ++ G I AP+ Sbjct: 337 ALKNADVFALDTETTSLNYMQAELVGVSVAVEAGKAAYIPFGHNYPGAPDQLDKQFVLDA 396 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 L +L D+ +K+ ++D++VL G+ +R V + T + S + + +H + Sbjct: 397 LKPILEDDNLKKVGQNLKYDMSVLAEDVGITLRGVAYDTMLESYVLDSVATRHDMDSLAL 456 Query: 125 ELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRS 177 + LG ++ + A L+ Q+ +YAA D L KL++ GR Sbjct: 457 KYLGRKTISFEEIAGKGAKQLTFNQVGLHEASRYAAEDADVTLRLHQTLWPKLEKEGRL 515 >gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3] gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3] Length = 921 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 25/207 (12%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63 + D+ + + A DTET G+ P + +V +S + + + A Sbjct: 337 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEVAK 392 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + K KI +FDI VL P+F T IA L +HG+ Sbjct: 393 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 451 Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171 + L ++I K + Q S ++ EQ+ +YAA D L+ F +L Sbjct: 452 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADITLKLKNYFAPEL 508 Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197 ++ G L T+ + E++ G Sbjct: 509 KKEGLESLFTTIEMPLIYVLVEMEATG 535 >gi|294056543|ref|YP_003550201.1| 3'-5' exonuclease [Coraliomargarita akajimensis DSM 45221] gi|293615876|gb|ADE56031.1| 3'-5' exonuclease [Coraliomargarita akajimensis DSM 45221] Length = 211 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 14/156 (8%) Query: 23 IAVDTETLGLMP------RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + DTET P ++QL+ D V + RI+ + P L +L + Sbjct: 56 LGFDTET---RPTFKKGEYYP-PALIQLATAD-CVYLFRISKSETLQP-LKAILESPQIL 109 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K + D+ L + +I + GL+ LL ISKA Q Sbjct: 110 KTGIGIKEDVRELRAMEDFQPSGFL--EITELTLKLGYENRGLRPLTGLLLNGRISKAAQ 167 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 S+W+ +L +Q++YAA+D L L+ ++++ Sbjct: 168 VSNWARQELDQKQIRYAATDAWVSRELYLRAQQEIE 203 >gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21] gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21] Length = 944 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 67/189 (35%), Gaps = 35/189 (18%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLC-IV--QLSPGDGTVDIIRIAAGQKN----------- 62 AR +AVDTET L LC +V L+ G I + G + Sbjct: 352 ARSARLVAVDTETTSLDCM---LCDLVGVSLATGPNQACYIPLGHGGSDMFAEKPQQIGK 408 Query: 63 ---APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI------ASRLTRTY 113 L +L D+ K+F G++D+ VL G+ V P+ T I A R Sbjct: 409 AEALAALKPLLEDDAVLKVFQNGKYDLNVLARE-GIAVAPIDDTMIISFALDAGRSESGI 467 Query: 114 TNQHGLKDNLKELLGI------NISKAQQSS-DWSADDLSDEQLQYAASDVVHLHALRLQ 166 HG+ + + LG + + + ++ L +YAA D L Sbjct: 468 GGGHGMDELAERHLGHPCISFKELCGTGRKAIPFAEVPLDKA-TEYAAEDADVTWRLHAM 526 Query: 167 FTEKLQRLG 175 +L G Sbjct: 527 LKRRLPVEG 535 >gi|168037922|ref|XP_001771451.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677178|gb|EDQ63651.1| predicted protein [Physcomitrella patens subsp. patens] Length = 565 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 64/189 (33%), Gaps = 39/189 (20%) Query: 16 AARYVDAIAVDTET--LGLMPRRDRLCIVQLS---------PGDGTVDIIRIAAGQ--KN 62 A +A+D E + R+ I+Q+S G+ + ++ + A Sbjct: 47 ALEEAMIVAMDAEWKPVRRAGVSPRVSIMQISCRIRKDEFITGEEVIFVLDLLALSAADF 106 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFC-----TKIAS--------- 107 A L ML + K+ + D L +F G F IA Sbjct: 107 AFPLKTMLCSPRILKLGFAFKQDQLHLSASFPGPEANGCFDKVEPYIDIAKLYKEFLHVN 166 Query: 108 ---------RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 R T H L K +LG + K Q S+W LS +Q+ YAA+D Sbjct: 167 FSNLKHKGKRFVLGGT--HSLTAISKAVLGHPLCKDAQCSNWEQRPLSQDQILYAAADTH 224 Query: 159 HLHALRLQF 167 L AL Sbjct: 225 CLLALFDTL 233 >gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] Length = 933 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 70/190 (36%), Gaps = 18/190 (9%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 T+ E P AR A+DTET GL ++ RL + L+ G I + Sbjct: 334 TVTTVEALEPWLTEARKAGLFAMDTETDGLDAQQCRLVGISLAIAPGKACYIPLDHQTTL 393 Query: 57 ------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 A + A L +L D KIF G+FD+AVL + P+ T + S Sbjct: 394 DQPVRQPAIAEIAAALNPILADPTVLKIFQNGKFDLAVLRRHQMPVIAPIDDTMLISYAQ 453 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + HG+ + LG + Q + + L Q+ YAA D L Sbjct: 454 EAGAHGHGMDELSVLHLGHSPISYDQVTGTGRNRLPFPQVPIDKATAYAAEDADVTLRLW 513 Query: 165 LQFTEKLQRL 174 +L+ Sbjct: 514 HALRPRLRET 523 >gi|281204580|gb|EFA78775.1| 3'-5' exonuclease domain-containing protein [Polysphondylium pallidum PN500] Length = 717 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 11/162 (6%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 R+ ++Q+S ++++ + +L+ +L D + K+ D +F F + Sbjct: 190 PRVALIQISTA-TDAYLLQMTQMSRIPKSLIAILTDPRILKVGVAINQDATTIFKNFNIL 248 Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELL-GINISKAQ--QSSDWSADDLSDEQLQYA 153 + +RLT N GL L G N+ K + S W LS EQ+ YA Sbjct: 249 TKGCVDLVPLARLTNYAGN--GLASLAYSTLNGCNLDKNHLVRCSHWELATLSAEQIHYA 306 Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 A D A+ Q + R + A SC + + +D Sbjct: 307 ACDAWISLAIYTQML----QTYRRNRALSCPDE-PTPSSMDF 343 >gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114] gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114] Length = 933 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 63/181 (34%), Gaps = 29/181 (16%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAGQKNA-------------- 63 +AVDTET GL L + L GT I + AAG + Sbjct: 346 GYVAVDTETTGLNEMTAELVGISLCVEPGTACYIPLIHKAAGSDDLFGSDDLAEGQMPLE 405 Query: 64 ---PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L +L DE KI ++D V G+ V P+ T + S + HG+ Sbjct: 406 TALEMLKPVLEDESILKIGQNMKYDAKVFAQ-VGITVAPIDDTMLMSYAMHGGLHGHGMD 464 Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + LG + + + + LS+ + YAA D L QF L R Sbjct: 465 ALSERYLGHTPLPIKPLLGSGKSAITFDKVPLSEA-VPYAAEDADVTLRLWQQFKPALHR 523 Query: 174 L 174 Sbjct: 524 A 524 >gi|328783376|ref|XP_001121410.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like [Apis mellifera] Length = 613 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 19/162 (11%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 D + D E + P + ++QL+ +G + RI L +L +++ K+ Sbjct: 84 DVLGFDCEWVNEGP----VSLLQLATFNGVCGLFRIGKIGYIPQKLEELLANKRILKVGV 139 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH------GLKDNLKELLGINISK- 133 D + +G +V RT + L + LG+ + K Sbjct: 140 ASYEDGQKIIADYGCKVCNTLD-------LRTLAERVNLPSPKSLAAMSLQYLGLEMDKL 192 Query: 134 -AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + S+W+A L+DEQ+ YAA D + + Q +K++ Sbjct: 193 IKVRCSNWNAGTLTDEQVAYAACDALASVLIYDQILQKIKEK 234 >gi|16549645|dbj|BAB70838.1| unnamed protein product [Homo sapiens] Length = 599 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61 + + VD E + R R ++Q++ + +A Q Sbjct: 109 EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 166 Query: 62 -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117 + + +L D K+ + D+ L + +I + ++ Sbjct: 167 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 224 Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 GL ++++LG + K QQ S+W L +EQ+ YAA+D L Sbjct: 225 ASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLE 284 Query: 163 LRLQFTEKLQR 173 + + R Sbjct: 285 VHQALCREPAR 295 >gi|320169455|gb|EFW46354.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 1559 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 54/198 (27%) Query: 20 VDAIAVDTETLG-LMPRRD--RLCIVQLSPG------DGTVDIIRIAAGQKNAP---NLV 67 VD +AVD E +G P ++ RL +VQ++ +G V ++ + + A L Sbjct: 756 VDRVAVDCEWIGDGQPGQEEERLSLVQIAAPATPTHVNGVVYLLDLLSDCAPASIIAPLG 815 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + K+FH R D+A+L + G+ V T+ Y L+ + Sbjct: 816 VLLARQTIVKVFHDARKDVALLTRSTGIAAVHNYADTQ------AEYAILQSLRQLVHNE 869 Query: 127 LGINISKAQQSSD-----------------------------------WSADDLSDEQLQ 151 G+ + + ++ W L + + Sbjct: 870 AGVALVPSGTGANVPARVGLNALFEQLALPTNPLKATFAARFRTEKHLWQRRPLDRDSIV 929 Query: 152 YAASDVVHLHALRLQFTE 169 YAA D +HL R + Sbjct: 930 YAAYDTLHLLRARDMIRQ 947 >gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47] Length = 975 Score = 78.1 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 22/211 (10%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA- 63 +E ++ A +A+DTET R L + ++ G I + A + Sbjct: 379 TNESELKALAVELAKQTVLAIDTETTSTHARGCDLVGISIAWQPGEAAYIPVRAPDGDPA 438 Query: 64 -------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTN 115 L +L EK+ H +FD+ VL + GV++ + T +A L + Sbjct: 439 INELIVIETLRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITMDTMVADYLLNSGGR 497 Query: 116 QHGLKDNLKELLGI-NIS-KAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167 HGL D + L N+S K + ++ +Q+ YA DV L Sbjct: 498 NHGLDDLAQRRLDHTNLSIKDLIGT--GKKQITMDQVPVDDVSPYACEDVDVPIRLAPTL 555 Query: 168 TEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 ++L G L AE++ G Sbjct: 556 RDELNESGLDGLFDEVEMPLTEVLAEMEFNG 586 >gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868] gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868] gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM] gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Riemerella anatipestifer RA-GD] Length = 935 Score = 77.7 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 21/192 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREK 77 A+ DTET L L + S G + I + A E K Sbjct: 364 AVCFDTETTSLDEMEAELIGISFSYKKGLAYYVPIPENRAEAQAIVERFRPFFEKESILK 423 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS-- 132 I H ++D VL +F T IA L +HG+ + L I + Sbjct: 424 IAHNLKYDYKVLLNYGIEVTGNLFDTMIAHYLLNPDG-RHGMDYLSEMYLNYKPIALETL 482 Query: 133 -----KAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCN 185 K Q++ ++ Q QYAA D L F+ +L++ ++ Sbjct: 483 IGKKGKGQKT----LREIDLPTQTQYAAEDADITFQLYEIFSPQLKKEEVEEVFYKIEMP 538 Query: 186 FLMDRAELDLLG 197 + A+++L G Sbjct: 539 LVKVLAKMELTG 550 >gi|221124179|ref|XP_002154311.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 608 Score = 77.7 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 22/171 (12%) Query: 14 ECAARYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---LVGM 69 EC + + +D E + + ++QLS G T I RI N L + Sbjct: 104 ECFQENLHFVGLDCEWVSNEKSH---VALIQLSLG-TTCLIYRIPQLSINEEFPFQLKKL 159 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY-----------TNQHG 118 L + K K D+ L ++ GV VR +I ++ + G Sbjct: 160 LENPKILKFGVAIYEDVRRL-HSHGVAVRGFVDLRILAQRCLPFITTKNSEDENKYKGMG 218 Query: 119 LKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L+ +LL +N+ K++ Q S+W A DLS EQ+ YAA D + + Sbjct: 219 LQSLSYKLLNMNLDKSRNIQCSNWHATDLSKEQILYAAKDAIASLEVFYAL 269 >gi|221117975|ref|XP_002165683.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 608 Score = 77.7 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 22/171 (12%) Query: 14 ECAARYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---LVGM 69 EC + + +D E + + ++QLS G T I RI N L + Sbjct: 104 ECFQENLHFVGLDCEWVSNEKSH---VALIQLSLG-TTCLIYRIPQLSINEEFPFQLKKL 159 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY-----------TNQHG 118 L + K K D+ L ++ GV VR +I ++ + G Sbjct: 160 LENPKILKFGVAIYEDVRRL-HSHGVAVRGFVDLRILAQRCLPFITTKNSEDENKYKGMG 218 Query: 119 LKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L+ +LL +N+ K++ Q S+W A DLS EQ+ YAA D + + Sbjct: 219 LQSLSYKLLNMNLDKSRNIQCSNWHATDLSKEQILYAAKDAIASLEVFYAL 269 >gi|156095069|ref|XP_001613570.1| DNA binding protein [Plasmodium vivax SaI-1] gi|148802444|gb|EDL43843.1| DNA binding protein, putative [Plasmodium vivax] Length = 481 Score = 77.7 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 5/132 (3%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 LC++QLS + I + P + ++ DEK K+ H R D + V++ Sbjct: 140 LCLIQLSS-KELCFVFNINKLKGKIPMCVKEIMEDEKIRKVCHDIRNDQDMFLDQH-VQI 197 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 R F + +++ L+ +K L N+ K + S+W +DDL +EQ+ YAA+D Sbjct: 198 RNSFD--LYDFCMQSFLYPPSLQFLVKLFLKKNLEKQFRLSNWLSDDLREEQILYAAADA 255 Query: 158 VHLHALRLQFTE 169 + + + Sbjct: 256 YASREVYMVLRD 267 >gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] Length = 920 Score = 77.7 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 19/192 (9%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKRE 76 +++DTET P L + + + + A ++A NLV + +E+ Sbjct: 348 KILSLDTETTSTNPMEAELVGLSFAVEPKKAFYVPVPAKHEDAVNLVKIFKPLYENEEIV 407 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISK 133 K+ ++D+ VL P+F T IA + + +H + + L I+I K Sbjct: 408 KVGQNIKYDMEVLRNYGIELKGPMFDTMIAHYVLQPEL-RHNMDYMAEVYLNYQTIHIEK 466 Query: 134 ------AQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCN 185 Q + DLS + YA D L+ KL+ G +DL Sbjct: 467 LIGERGKNQK---NMRDLSPTDVYLYACEDADITLQLKNALEPKLKEAGVADLFYQMEMP 523 Query: 186 FLMDRAELDLLG 197 + AE+++ G Sbjct: 524 LVNVLAEMEMNG 535 >gi|194878428|ref|XP_001974061.1| GG21519 [Drosophila erecta] gi|190657248|gb|EDV54461.1| GG21519 [Drosophila erecta] Length = 625 Score = 77.7 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 52/205 (25%) Query: 10 DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54 D+P EC + I +D+E + + ++LC++Q++ G I Sbjct: 404 DLPDECLIIVDKAEQFDRMLYHLQQEYVIYLDSEWMQSVCGENQLCVLQIATGHNVYLID 463 Query: 55 RIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 +A + + + + K+ D++VL + P+ ++ ++ Sbjct: 464 CLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSL-----PL---QLRLQMP 515 Query: 111 RTYTNQHG-------------------------LKDNLKELLGINISKAQQSSDWSADDL 145 Y + L D LG ++K+ Q S+W+ L Sbjct: 516 HHYLDLRSLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPL 575 Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170 EQ+ YAA D L + + Sbjct: 576 RREQILYAAMDARCLLLIYNTLIAR 600 >gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908] gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908] Length = 945 Score = 77.7 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 18/189 (9%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI HE D IA+DTET L +L + + G + +A + Sbjct: 348 TILTHEALDKWIEQLTKADLIAIDTETTSLDYMTAKLVGISFAVEVGKAAYLPLAHDYLD 407 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 AP L +L D K +K+ ++DI++ G++++ V F T + S + Sbjct: 408 APEQLDFDEAIAKLKPLLEDPKLKKVGQNLKYDISIFAN-VGIKLQGVAFDTMLESYVFN 466 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165 + ++H + D + LG ++ + A L+ Q+ YAA D L Sbjct: 467 SVASKHNMDDLALKYLGHKNISFEEIAGKGAKQLTFNQIDLETAAPYAAEDADITLRLHQ 526 Query: 166 QFTEKLQRL 174 +L++ Sbjct: 527 HLWARLEKE 535 >gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000] gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000] Length = 982 Score = 77.7 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 26/183 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------NAPN----- 65 A +A DTET L LC V L+ G I I+ +K AP Sbjct: 389 ATDKGLVAFDTETDALSSATAGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPADIEQI 448 Query: 66 --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D K+ ++DIAVL G++V P+ T + S + + H Sbjct: 449 PLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVAPIEDTMLISYVLEAGLHGH 507 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKL 171 G+ + + LG +Q + +S E YAA D L +L Sbjct: 508 GMDELSELHLGHKPIPFKQVAGSGKGQISFKHVALPEATAYAAEDADVTLRLYHHLKPQL 567 Query: 172 QRL 174 R Sbjct: 568 ARA 570 >gi|224072969|ref|XP_002190738.1| PREDICTED: similar to Protein AMBP [Taeniopygia guttata] Length = 831 Score = 77.7 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 48/177 (27%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVGML-VDEKREKIFHYGRFDIA 87 R+ ++QL+ D + + + P+ + ML D K+ + D++ Sbjct: 173 PRVALLQLALKDEVFLLDLPQLLEQAETEGEKEKLPHFIQMLYSDATITKLGYGMSGDLS 232 Query: 88 VLFYTFGVRVRPVFCTK---------IA----------SRLTRTYTNQH----------- 117 L T + T+ +A SR + +H Sbjct: 233 SLAATC----STLKDTEKQMQGVVDLLAVDKQLQWGKDSRKVDGLSPEHSHEQRGVRQPE 288 Query: 118 -GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA----ASDVVHLHALRLQFTE 169 GL ++ +LG + K +Q S+W L +EQ+ YA ASD L + + + Sbjct: 289 KGLSLLVQHVLGKPLDKTEQLSNWEKRPLREEQILYAGLALASDAYCLLEIYERLCK 345 >gi|301781518|ref|XP_002926188.1| PREDICTED: LOW QUALITY PROTEIN: probable exonuclease mut-7 homolog [Ailuropoda melanoleuca] Length = 849 Score = 77.7 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 44/198 (22%) Query: 9 GDIP--AECAARYVDAIAVDTE-TLGLMPR-RDRLCIVQLSPGDGTVDII-----RIAAG 59 D+ + + + VD E R + I+Q++ + R A G Sbjct: 388 EDLARHEDELLQPGQVVGVDLEWRPSFGTGGRPQASIMQVAVEGRVFLLDVRVLSRPAGG 447 Query: 60 QKNA--PNLV-GMLVDEKREKIFHYGRFDIAVLFYTFGVRV------------------- 97 Q + LV +L D K+ + D+ L + Sbjct: 448 QVSQAFSRLVSQLLSDPSITKLGYGMAGDLRSLGASCPALAHVEKQLRGSLDLLQVHRQM 507 Query: 98 ----RPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 +P L R GL ++++LG + K+QQ S+W LS+ QL Y Sbjct: 508 RAVDKP--------ALGRGEARGLRGLSLLVQQVLGKPLDKSQQLSNWDRRPLSEGQLVY 559 Query: 153 AASDVVHLHALRLQFTEK 170 AA+D L + + Sbjct: 560 AAADAYCLLGVYQALCRE 577 >gi|316973270|gb|EFV56889.1| putative 3'-5' exonuclease [Trichinella spiralis] Length = 535 Score = 77.7 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 25/202 (12%) Query: 9 GDIPAECAARYVDAIAVDTE--------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 D+ + V + +D E G + +VQ + G ++R++ Sbjct: 43 NDL--QLDIDKVPVLGLDCEWSADCSSNATGRN-----VSLVQFATAFGVCILVRLSQMN 95 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + V +L + K K+ D+ L+ G+ VR F L L+ Sbjct: 96 TPTSSFVTVLENSKVMKVGLGIEQDVKRLYLDHGIVVRGKFDV---RYLLDVDQRNISLQ 152 Query: 121 DNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ-FTEKLQRLGRS 177 +K + K S+W A +L++ Q+QYA+SD + L+ + KL + Sbjct: 153 TLVKNCFDHVLVKLTKVACSNWDATELTEAQIQYASSDAQYSLDCFLKSLSNKLLDHSWT 212 Query: 178 DLATSCCNFLMDRAELDLLGWE 199 C+ A+ L ++ Sbjct: 213 MW----CSCAQTAAQKALDDYD 230 >gi|308509326|ref|XP_003116846.1| CRE-CRN-3 protein [Caenorhabditis remanei] gi|308241760|gb|EFO85712.1| CRE-CRN-3 protein [Caenorhabditis remanei] Length = 488 Score = 77.7 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 2/79 (2%) Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + L + + K Q +DW A L + + YA D +L E+L + Sbjct: 7 PKFSLAYLAFRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQ 66 Query: 175 GRSDL--ATSCCNFLMDRA 191 + DL S CN L R Sbjct: 67 DKKDLNVVYSECNDLCVRV 85 >gi|289743943|gb|ADD20719.1| putative 3'-5' exonuclease [Glossina morsitans morsitans] Length = 514 Score = 77.7 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 10/189 (5%) Query: 21 DAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + D E T+G RR + ++QL+ +G + R+ +L +L D+ K+ Sbjct: 80 KVLGFDCEWITIG-RVRRP-VALLQLASPNGFCGLFRLCHMDHIPESLKNLLADKDIIKV 137 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--Q 136 D L +G+ V F + + + R GL+ + LL ++ K Sbjct: 138 GVDPAGDARKLRADYGIYVASTFDIRYLAVMIRC--KPLGLEKLSRSLLNVDFVKPWYIA 195 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE--LD 194 S+W D L D+Q++YAA D + +L+ + + + + LD Sbjct: 196 RSNWEFDKLDDDQVEYAAKDAFAGVEIFKHLANRLEPRNYWNFTYIDFIAIKSKIKYLLD 255 Query: 195 LLGWENVDI 203 L EN+ I Sbjct: 256 LDFSENIPI 264 >gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15] gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15] Length = 967 Score = 77.7 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 26/183 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------NAPN----- 65 A +A DTET L LC V L+ G I I+ +K AP Sbjct: 374 ATDKGLVAFDTETDALSSATAGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPADIEQI 433 Query: 66 --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D K+ ++DIAVL G++V P+ T + S + + H Sbjct: 434 PLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVAPIEDTMLISYVLEAGLHGH 492 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKL 171 G+ + + LG +Q + +S E YAA D L +L Sbjct: 493 GMDELSELHLGHKPIPFKQVAGSGKGQISFKHVALPEATAYAAEDADVTLRLYHHLKPQL 552 Query: 172 QRL 174 R Sbjct: 553 ARA 555 >gi|220905226|ref|YP_002480538.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869525|gb|ACL49860.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 214 Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 14/164 (8%) Query: 12 PAECAARYVDAIAVDTETLGLMP-----RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 A R + DTET P RR+ ++QL+ V +I+++ P+L Sbjct: 38 AALPLLREESILGFDTET---RPSFRKGRRNSPALIQLATA-RAVYLIQLS-WLPFGPHL 92 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY-TNQHGLKDNLKE 125 +L + + K R D+ L + + R + GL+ Sbjct: 93 ADLLANPVQVKAGVGIRDDMRDLAKLHDFEPAGLVD---LGGVARAHKLPSQGLRTLAAN 149 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 G +SK Q S+WS +LS Q+ YAA+D + ++ E Sbjct: 150 FFGWRVSKGSQCSNWSLPELSARQIAYAATDAWIGRLIFIRMCE 193 >gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] Length = 1024 Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 66/206 (32%), Gaps = 32/206 (15%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA---- 58 TI + A +AVDTET L R L V L+ G I ++ Sbjct: 418 TITSLDRLDAWVAEAAEAGVLAVDTETNALDAHRADLVGVSLATAPGRAAYIPLSHRGSE 477 Query: 59 ---GQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105 G+ PN L +L D K+ ++D VL G+ VRP T + Sbjct: 478 DLFGEGLLPNQLPWEAVRARLKPLLEDPAVLKVGQNLKYDWLVLARH-GIEVRPYDDTML 536 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD----------WSADDLSDEQLQYAAS 155 S + HG+ + + LG +D + L YAA Sbjct: 537 ISYVLDAGKGSHGMDELARRHLGHQP---ITFADVTGTGRTKVTFDRVPLDKA-TAYAAE 592 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLAT 181 D L +L R+ + Sbjct: 593 DADVTLRLWRLMKPRLAAERRATVYE 618 >gi|145279204|ref|NP_060290.3| probable exonuclease mut-7 homolog [Homo sapiens] gi|308153580|sp|Q8N9H8|MUT7_HUMAN RecName: Full=Probable exonuclease mut-7 homolog; AltName: Full=Exonuclease 3'-5' domain-containing protein 3 gi|220678451|emb|CAX12959.1| novel protein (FLJ20433) [Homo sapiens] Length = 876 Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61 + + VD E + R R ++Q++ + +A Q Sbjct: 386 EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 443 Query: 62 -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117 + + +L D K+ + D+ L + +I + ++ Sbjct: 444 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 501 Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 GL ++++LG + K QQ S+W L +EQ+ YAA+D L Sbjct: 502 ASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQVIYAAADAYCLLE 561 Query: 163 LRLQFTEKLQR 173 + + R Sbjct: 562 VHQALCREPAR 572 >gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] Length = 896 Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 19/198 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------LVG 68 + D I++D ET L P ++ + ++ DG I + + L Sbjct: 318 LKGSDVISIDLETSSLDPHEAKIVGISVAIKDGEGFYIPVNHESSDWQADEKQVLLRLKE 377 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D + + +FD +L G+ P F T IA+ L + + L D + L Sbjct: 378 LLEDSGTKIVGQNLKFDYEILEKH-GIEPVVPHFDTMIAAYLLNPDSRRFNLDDLALKFL 436 Query: 128 GIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 G ++K Q + + + +Y+ D L ++KL ++ Sbjct: 437 GYRTTSFSELMNKNQLKDQFEKVSVEEA-AKYSVEDADIALRLYRVLSKKLYESDLDNIF 495 Query: 181 TS-CCNFLMDRAELDLLG 197 + AEL+L G Sbjct: 496 HKIEMELIPVLAELELNG 513 >gi|302837201|ref|XP_002950160.1| 3'-5' exonuclease [Volvox carteri f. nagariensis] gi|300264633|gb|EFJ48828.1| 3'-5' exonuclease [Volvox carteri f. nagariensis] Length = 313 Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 23/130 (17%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK---IASR----LTRTYTNQHG 118 L +L K+F+ R D L++ GV +R V + +A R + R G Sbjct: 132 LKEVLECPSVTKLFYDVRCDAEALYHQHGVSLRGVVDLQLSEVAYRRYGPVVRRVGYVIG 191 Query: 119 LKDNLKELLGINISKAQQSS----------------DWSADDLSDEQLQYAASDVVHLHA 162 L L+ L + + QS+ W LS EQ++YAA DV++LH Sbjct: 192 LTRALECYLAPELRERWQSTAVDKRLLHETFNRDLRYWDRRPLSQEQVRYAADDVLYLHH 251 Query: 163 LRLQFTEKLQ 172 L +FT L Sbjct: 252 LHREFTAALA 261 >gi|322801849|gb|EFZ22421.1| hypothetical protein SINV_07950 [Solenopsis invicta] Length = 612 Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 11/154 (7%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + D E + P + ++QL+ +G V + RI L +L + K+ Sbjct: 99 GILGFDCEWVKEGP----VSLLQLATNNGVVALFRIGKIGYIPFKLKELLATKHILKVGV 154 Query: 81 YGRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQ 136 D L +G RV T +A L ++ L ++ L I + K + Sbjct: 155 SSFEDGQKLVKDYGCRVNGTLDLRT-LADSL--NLPSRKSLAAMCEQYLNIEMDKLIEVR 211 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 DW A LSD+Q+ YAA D + + + EK Sbjct: 212 CGDWDASTLSDDQVAYAACDALASVIIYHKIMEK 245 >gi|291406465|ref|XP_002719587.1| PREDICTED: exonuclease 3'-5' domain containing 2 isoform 1 [Oryctolagus cuniculus] Length = 643 Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 14/162 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + + L ++Q++ G +IR+ G+ L+ +L D Sbjct: 121 LEDFPVLGIDCEWVNCEGKASPLSLLQMASTSGFCVLIRLPKLTYGGRVLPRTLLDILAD 180 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASR----LTRTYTNQHGLKDNLKELL 127 K+ D + L +G+ VR +A R L R N LK + +L Sbjct: 181 GTILKVGVGCSEDASKLLQDYGLAVRGCLDLRYLAVRQRNNLLR---NGLSLKSLAETVL 237 Query: 128 GINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ Q S+W A++L+++Q+ YAA D AL L Sbjct: 238 NFPLDKSLQLRCSNWDAENLTEDQVTYAARDAQVSVALFLHL 279 >gi|47210358|emb|CAF90237.1| unnamed protein product [Tetraodon nigroviridis] Length = 624 Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 14/170 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVD 72 R + + +D E + + + ++Q++ G ++R+ + Q +L +L D Sbjct: 115 LRLLPVLGLDCEWVSAKGKASSVSLLQMATYSGLCVLVRLQAFRSCQQPFPLSLAEVLRD 174 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-----QHGLKDNLKELL 127 + K+ D L +G+ + CT L + LK +LL Sbjct: 175 PRVFKVGVGCYEDGRRLTRDYGLSLS---CTVDLRYLALRQRDTKVNNGLSLKSLAADLL 231 Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + + K+ + SDW AD LS EQ+ YAA D AL L L G Sbjct: 232 NVCLDKSLDVRCSDWEADQLSPEQVTYAARDAQVSVALFLSLLGILSEAG 281 >gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1] gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1] Length = 944 Score = 77.3 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 74/206 (35%), Gaps = 39/206 (18%) Query: 3 TIRVHEGDIPAECA----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-- 56 T D+PA A A +A DTET L LC V L+ G I + Sbjct: 333 TAYACVRDLPALDAWIAKAYARGIVAFDTETDALSSATAGLCGVSLAVAPGEACYIPLGH 392 Query: 57 ----------AAGQKNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 AA P L +L D K+ ++DIAVL G+ V P+ Sbjct: 393 CEAEGLQLEAAADLTQIPLEQAIARLKPLLEDPSVLKVAQNAKYDIAVLSRY-GIEVGPI 451 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINIS-----------KAQQSSDWSADDLSDEQ 149 T + S + + HG+ + K LG++ KAQ+S + LS+ Sbjct: 452 DDTMLISYVLEAGLHNHGMDELSK--LGLDHEPIAFKSVAGTGKAQKS--FKYVGLSEAT 507 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLG 175 YAA D L +L G Sbjct: 508 C-YAAEDADVTLRLWEHLKPRLAHEG 532 >gi|119608789|gb|EAW88383.1| hypothetical protein FLJ20433, isoform CRA_c [Homo sapiens] Length = 876 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61 + + VD E + R R ++Q++ + +A Q Sbjct: 386 EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 443 Query: 62 -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117 + + +L D K+ + D+ L + +I + ++ Sbjct: 444 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 501 Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 GL ++++LG + K QQ S+W L +EQ+ YAA+D L Sbjct: 502 ASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLE 561 Query: 163 LRLQFTEKLQR 173 + + R Sbjct: 562 VHQALCREPAR 572 >gi|326508692|dbj|BAJ95868.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 562 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 25/175 (14%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDR------LCIVQLSPGDGTVDIIRIAAGQK 61 +G + A I VD E P ++ + I+Q++ D I + + Sbjct: 363 KGLLSATSYIEACKIIGVDCE---WKPNYEKGSRPNKVAIIQIAS-DKKAFIFDLIKLYE 418 Query: 62 NAPN-----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTR 111 + P ++ K+ + + D+ L ++G + + + +L + Sbjct: 419 DDPKALDCCFRRIMCSSNILKLGYNLQCDLHQLTQSYGELLCFQSYEMLLDIQ---KLFK 475 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 T GL K++LG ++K +++SDW LS Q +YAA D L + Sbjct: 476 ETTG--GLSGLSKKILGAGLNKTRRNSDWEQRPLSQNQKEYAALDAAVLVHIFHH 528 >gi|291406467|ref|XP_002719588.1| PREDICTED: exonuclease 3'-5' domain containing 2 isoform 2 [Oryctolagus cuniculus] Length = 620 Score = 77.0 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 14/162 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + + L ++Q++ G +IR+ G+ L+ +L D Sbjct: 98 LEDFPVLGIDCEWVNCEGKASPLSLLQMASTSGFCVLIRLPKLTYGGRVLPRTLLDILAD 157 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASR----LTRTYTNQHGLKDNLKELL 127 K+ D + L +G+ VR +A R L R N LK + +L Sbjct: 158 GTILKVGVGCSEDASKLLQDYGLAVRGCLDLRYLAVRQRNNLLR---NGLSLKSLAETVL 214 Query: 128 GINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ Q S+W A++L+++Q+ YAA D AL L Sbjct: 215 NFPLDKSLQLRCSNWDAENLTEDQVTYAARDAQVSVALFLHL 256 >gi|302846316|ref|XP_002954695.1| hypothetical protein VOLCADRAFT_106481 [Volvox carteri f. nagariensis] gi|300260114|gb|EFJ44336.1| hypothetical protein VOLCADRAFT_106481 [Volvox carteri f. nagariensis] Length = 1044 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 29/121 (23%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV------------------------- 51 R I +DTE L+ R+C++QLS D T Sbjct: 217 LRQERQIGLDTEASPLLCYHGRVCLIQLSVWDDTASPCDGGDDGGSSGCSSGSGGSGGGG 276 Query: 52 ----DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 + +A L G++ D + K+ H G D+ L F V + VF T+ AS Sbjct: 277 GHVWLVDALALRGHVGAALGGLMADPRVVKVLHGGGNDVVWLQRDFRVYLVNVFDTEKAS 336 Query: 108 R 108 + Sbjct: 337 Q 337 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 119 LKDNLKELLGINI--SKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L L ++G+++ KA Q +DW L L+YAA+DV +L L +L LG Sbjct: 408 LASLLSRIVGLDVGAEKAAGQRADWRRRPLPPALLRYAAADVAYLPYLADVLRRELAALG 467 >gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199] gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199] Length = 943 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 64/192 (33%), Gaps = 33/192 (17%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------AAGQK 61 AA+ + +A DTET L R L V L+ G I + A + Sbjct: 340 VAAQDLGTVAFDTETTSLDCMRADLVGVSLAVAPGKACYIPLRHVGRQAQGDLLGAGPAE 399 Query: 62 NAP----------NLVGMLVDEKREKIFHYGRFDIAVLFY--TFGVRVRPVFCTKIASRL 109 AP L +L + KI H ++D VL G+ V P+ T S + Sbjct: 400 EAPKQIPFDTAMARLKDLLENPAVLKIAHNAKYDALVLSRPKNGGITVAPIDDTMCLSYV 459 Query: 110 TRTYTNQHGLKDNLKELLGI-NIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 + HGL + LG NI K + ++ + YAA D Sbjct: 460 LEGGLHGHGLDELATLHLGHTNIKFEEVCGKGKTQIGFAEAPIDKA-CAYAAEDADVTFR 518 Query: 163 LRLQFTEKLQRL 174 L +L Sbjct: 519 LHALLKPRLVPE 530 >gi|195401270|ref|XP_002059237.1| GJ16284 [Drosophila virilis] gi|194156111|gb|EDW71295.1| GJ16284 [Drosophila virilis] Length = 621 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 52/202 (25%) Query: 10 DIPAECAA---------------RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54 D+P EC + I +D+E + + +++LC++Q++ I Sbjct: 399 DLPDECLLIVDTAATFERMLQHLQREQIIYMDSEWMQNVCAQNQLCLLQIATTHNVYLID 458 Query: 55 RIAAGQKNAPNLVG-----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 +A+ Q + + K+ D++VL + P+ ++ + Sbjct: 459 CLASRQALHEEHWRALGANVFNNPNILKVGFSMLNDLSVLQRSL-----PL---QLRLHM 510 Query: 110 TRTYTN----------QHG--------------LKDNLKELLGINISKAQQSSDWSADDL 145 Y + +HG L D LG ++KA Q S+W+ L Sbjct: 511 PHHYLDLRNVWLELKKRHGVELPYGNVNRAGDALTDLSMLCLGKKLNKANQCSNWANRPL 570 Query: 146 SDEQLQYAASDVVHLHALRLQF 167 EQ+ YAA D L + Sbjct: 571 RREQILYAAIDARCLLLIYDCL 592 >gi|119608788|gb|EAW88382.1| hypothetical protein FLJ20433, isoform CRA_b [Homo sapiens] Length = 390 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61 + + VD E + R R ++Q++ + +A Q Sbjct: 66 EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 123 Query: 62 -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117 + + +L D K+ + D+ L + +I + ++ Sbjct: 124 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 181 Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 GL ++++LG + K QQ S+W L +EQ+ YAA+D L Sbjct: 182 ASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLE 241 Query: 163 LRLQFTEKLQR 173 + + R Sbjct: 242 VHQALCREPAR 252 >gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894] gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894] Length = 927 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 18/173 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + +AVDTET L L + + G I +A +AP+ L Sbjct: 346 KNAPVVAVDTETDSLDNLTANLVGISFATEPGLAAYIPVAHDYLDAPDQLSRDRVLELLK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L DE K+ +FD +L G+ +R + F T + S + + + +H + Sbjct: 406 PLLEDESLVKVGQNLKFDRGILQNY-GIELRGIAFDTMLESYILDSVSGRHDMDSLSSRW 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L +Q + + L+ Q+ YAA D L L+ KLQ+ Sbjct: 465 LKHTTITFEQIAGKGKNQLTFNQIDLEQAGRYAAEDADVTLQLHLKMWPKLQQ 517 >gi|330998346|ref|ZP_08322170.1| 3'-5' exonuclease [Paraprevotella xylaniphila YIT 11841] gi|329568452|gb|EGG50257.1| 3'-5' exonuclease [Paraprevotella xylaniphila YIT 11841] Length = 206 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 14/160 (8%) Query: 22 AIAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + VDTET R +++ ++Q+S D G ++ + +L DE K Sbjct: 46 VLGVDTET--RPSFRKGCVNKVALLQVSTDDTCFLFRLNYIGVTDS--VKRLLQDENVLK 101 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINISKAQQ 136 + R D A L R + R + L+ + G ISK Q+ Sbjct: 102 VGLSLRDDFASLHKRGEFEPRAFLDLQ---DYVRAFGIEDMSLQKLYANIFGQKISKGQR 158 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++W AD L++ Q YAA+D L + R + Sbjct: 159 LTNWEADVLTEGQKLYAATDAWACIRLYRELEAL--RENK 196 >gi|22759879|dbj|BAC10986.1| HBE269 [Homo sapiens] Length = 514 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61 + + VD E + R R ++Q++ + +A Q Sbjct: 66 EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 123 Query: 62 -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117 + + +L D K+ + D+ L + +I + ++ Sbjct: 124 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 181 Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 GL ++++LG + K QQ S+W L +EQ+ YAA+D L Sbjct: 182 ASVPAPAVDRARELRGLTLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLE 241 Query: 163 LRLQFTEKLQR 173 + + R Sbjct: 242 VHQALCREPAR 252 >gi|255080460|ref|XP_002503810.1| predicted protein [Micromonas sp. RCC299] gi|226519077|gb|ACO65068.1| predicted protein [Micromonas sp. RCC299] Length = 503 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 74/237 (31%), Gaps = 72/237 (30%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-----------QK 61 A CAA D +AVD E + + R + ++Q++ GD A G Sbjct: 243 ARCAA--CDVVAVDCEGVNM-SRVGAITLLQVAAGDSAYLFDVQAMGRACFEMVSDASVT 299 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA--------------- 106 N NL +L D K K+ R D LF+ GV + VF ++A Sbjct: 300 NGRNLKSVLEDPKVVKLMFDCRVDSDALFHQHGVSLTNVFDVQLADVAARRANHHAVSLL 359 Query: 107 -------------------SRLTRTYTNQ-------------HGLKDNLKELLGINISKA 134 + L ++ + + L K Sbjct: 360 SGMPKCAGRWLPKGPNQAEAALAAQGPDRAPIRSDSDAPPDAASVARVTEHLKRK--VKE 417 Query: 135 QQSSD-------WSADDLSDEQLQYAASDVVHLHALRLQFTEK--LQRLGRSDLATS 182 Q +S+ W+ L+++ +YAA D L + L R+ + Sbjct: 418 QYASNLGGDGELWAKRPLAEDVRRYAALDAWLLKEIYAAMEHANVLDEDWRARVVKE 474 >gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289] gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289] Length = 920 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76 + +++DTET R L + S + + + A ++ A + ++ Sbjct: 348 EFVSIDTETTSTDAIRAELVGLSFSVEENKAFYVPLPANREEALKYVRIFKPLYENDNIL 407 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 KI ++D VL +F T IA L + + H + + LLG I+I Sbjct: 408 KIGQNIKYDYEVLNNYGVTLQGKMFDTMIAHYLIQPELH-HNMDYMAETLLGYRTIHIEE 466 Query: 133 ------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q+ + DLS + +YAA D L+ +L+ LG +L + Sbjct: 467 LIGPKGKKQK----NMRDLSPTDICEYAAEDADITLRLKHLLEPRLKELGLEELFWNIEM 522 Query: 185 NFLMDRAELDLLG 197 + A+++L G Sbjct: 523 PLVRVLADMELNG 535 >gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032] gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032] Length = 966 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 18/173 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + +AVDTET L L + + G I +A +AP+ L Sbjct: 385 KTAPVVAVDTETDSLDNLTANLVGISFATEPGLAAYIPVAHDYLDAPDQLPRDRVLELLK 444 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L DE K+ +FD +L G+ +R + F T + S + + + +H + Sbjct: 445 PLLEDESLVKVGQNLKFDRGILQNY-GIELRGIVFDTMLESYILDSVSGRHDMDSLSSRW 503 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L +Q + + L+ Q+ YAA D L L+ KLQ+ Sbjct: 504 LKHTTITFEQIAGKGKNQLTFNQIDLEQAGRYAAEDADVTLQLHLKMWPKLQQ 556 >gi|21428342|gb|AAM49831.1| GM01690p [Drosophila melanogaster] Length = 625 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 52/205 (25%) Query: 10 DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54 D+P EC + I +D+E + + ++LC++Q++ G I Sbjct: 404 DLPDECLIIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCVLQIATGHNVYLID 463 Query: 55 RIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 +A + + + + K+ D++VL + P+ ++ ++ Sbjct: 464 CLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSL-----PL---QLRLQMP 515 Query: 111 RTYTN-----------QHG--------------LKDNLKELLGINISKAQQSSDWSADDL 145 Y + + G L D LG ++K+ Q S+W+ L Sbjct: 516 HHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPL 575 Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170 EQ+ YAA D L + E+ Sbjct: 576 RREQILYAAIDARCLMLIYNTLIER 600 >gi|20129683|ref|NP_610094.1| CG9247 [Drosophila melanogaster] gi|75027007|sp|Q9VIF1|MUT7_DROME RecName: Full=Probable exonuclease mut-7 homolog; AltName: Full=Exonuclease 3'-5' domain-containing protein 3 homolog gi|7298759|gb|AAF53970.1| CG9247 [Drosophila melanogaster] Length = 625 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 52/205 (25%) Query: 10 DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54 D+P EC + I +D+E + + ++LC++Q++ G I Sbjct: 404 DLPDECLIIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCVLQIATGHNVYLID 463 Query: 55 RIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 +A + + + + K+ D++VL + P+ ++ ++ Sbjct: 464 CLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSL-----PL---QLRLQMP 515 Query: 111 RTYTN-----------QHG--------------LKDNLKELLGINISKAQQSSDWSADDL 145 Y + + G L D LG ++K+ Q S+W+ L Sbjct: 516 HHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPL 575 Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170 EQ+ YAA D L + E+ Sbjct: 576 RREQILYAAIDARCLMLIYNTLIER 600 >gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] Length = 944 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 15/192 (7%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEK 74 + DTET L L + S G I ++ + E Sbjct: 370 QQKVVCFDTETTSLNELEAELVGMSFSYKKGLAYYIPLSEDRAEVLQTLEIFRPFFEKED 429 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ H +FD VL +F T IA L +HG+ + L ++I Sbjct: 430 LLKVAHNLKFDYKVLKQYDITVKGAMFDTMIAHYLLNPDG-RHGMDYLSEVYLNYKPVSI 488 Query: 132 S-----KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCN 185 K ++ ++ DL Q YAA D L F +L++ +L Sbjct: 489 ETIIGKKGKKQGNFRDADL-RTQTDYAAEDADVTFQLYELFAPQLKKENLEELFYNIEMP 547 Query: 186 FLMDRAELDLLG 197 + A+++L G Sbjct: 548 LMEVLAKMELSG 559 >gi|242218433|ref|XP_002475007.1| predicted protein [Postia placenta Mad-698-R] gi|220725829|gb|EED79800.1| predicted protein [Postia placenta Mad-698-R] Length = 483 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 31/187 (16%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIA 57 + D E AA + D E + +R R +VQLS + + Sbjct: 159 VYTRHEDEANELAAALTGPLGFDME-WRIFIQRGAPIIERRTAVVQLSDARMILVV---- 213 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS-------RLT 110 ++ K R D LF +G+ + ++ + + Sbjct: 214 ---------QELIESPTVVKTGANIRNDGEKLFRDYGIVAANL--VELGALAHRADPAFS 262 Query: 111 RTYTNQ-HGLKDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 Y L ++ ++ K + + +W A LS EQ+ YAA+D + + Sbjct: 263 TIYHRSIVSLARMVEHYTRRSLDKGKVRIGNWEAAPLSQEQITYAANDAHCALVVYKRLI 322 Query: 169 EKLQRLG 175 E G Sbjct: 323 EIATEHG 329 >gi|167535101|ref|XP_001749225.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772378|gb|EDQ86031.1| predicted protein [Monosiga brevicollis MX1] Length = 411 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 36/195 (18%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIA-AGQKNAPN 65 D+ A+ A + I+ D E G + D RL I+QL+ I A G + Sbjct: 216 ADVKADAAMQR--PISFDCEWAGTVSLYDDTRLGIMQLATKSAVYVIDACAEPGVFDFCA 273 Query: 66 L------------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT--KIASRLT- 110 G++ D + K D G RV V T ++ + Sbjct: 274 FATRLLQLTPIIGFGVMSDRDQLK---SAGVD----GELVGQRVLDVMDTVAQLQQTIPV 326 Query: 111 --------RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 + + + L D ++ L+G++++K +Q +DW L E L YAA D L Sbjct: 327 PPTYPDKWQGSSPRISLADLVQGLVGVSLAKHEQLADWERRPLRPESLHYAALDAYVLLQ 386 Query: 163 LRLQFTEKLQRLGRS 177 + + K+Q G+ Sbjct: 387 VLDILS-KVQATGQW 400 >gi|281345331|gb|EFB20915.1| hypothetical protein PANDA_015792 [Ailuropoda melanoleuca] Length = 723 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 44/198 (22%) Query: 9 GDIP--AECAARYVDAIAVDTE-TLGLMPR-RDRLCIVQLSPGDGTVDII-----RIAAG 59 D+ + + + VD E R + I+Q++ + R A G Sbjct: 349 EDLARHEDELLQPGQVVGVDLEWRPSFGTGGRPQASIMQVAVEGRVFLLDVRVLSRPAGG 408 Query: 60 QKNA--PNLV-GMLVDEKREKIFHYGRFDIAVLFYTFGVRV------------------- 97 Q + LV +L D K+ + D+ L + Sbjct: 409 QVSQAFSRLVSQLLSDPSITKLGYGMAGDLRSLGASCPALAHVEKQLRGSLDLLQVHRQM 468 Query: 98 ----RPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 +P L R GL ++++LG + K+QQ S+W LS+ QL Y Sbjct: 469 RAVDKP--------ALGRGEARGLRGLSLLVQQVLGKPLDKSQQLSNWDRRPLSEGQLVY 520 Query: 153 AASDVVHLHALRLQFTEK 170 AA+D L + + Sbjct: 521 AAADAYCLLGVYQALCRE 538 >gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] Length = 932 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76 +++DTET P R L + S + + + A + A + + + Sbjct: 360 SVLSLDTETTSTDPIRAELVGMSFSYAENQAFYVPVPADRSEAQKIVDRFRPVFENREIM 419 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 K+ ++D+ VL P+F T +A + + +H + + L I+I Sbjct: 420 KVGQNIKYDMLVLANYGVQLQGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLNYQTIHIEE 478 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q + DL + +YA D L+ + ++L L Sbjct: 479 LIGPKGKNQG----NMRDLPPASVYEYACEDADVTLKLKNKLEKELDENNVRKLFEEIEM 534 Query: 185 NFLMDRAELDLLG 197 + A ++ G Sbjct: 535 PLIPVLAYMERNG 547 >gi|218263130|ref|ZP_03477349.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii DSM 18315] gi|218222915|gb|EEC95565.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii DSM 18315] Length = 193 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 58/157 (36%), Gaps = 20/157 (12%) Query: 22 AIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 A+ DTE ++ ++Q+S D + R+ L L +EK +K Sbjct: 47 AVGFDTETRPSFKKGQRY--KISLMQIST-DEACFLFRLNRIDIPK-VLEEFLANEKVQK 102 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINIS 132 I R D + ++ + Y Q G L+ L IS Sbjct: 103 IGLSLRDDFGAMQKRKDIQPANFLD-------LQNYVGQFGIEDASLQKIYAILFNKKIS 155 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 K Q+ S+W AD LSD Q +YAA D + Q + Sbjct: 156 KGQRLSNWEADVLSDAQKKYAALDAWACLKIYNQLKQ 192 >gi|118099131|ref|XP_415556.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 865 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 41/174 (23%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG-MLVDEKREKIFHYGRFDIA 87 R+ ++QL+ D + + + P+ + + D K+ + D++ Sbjct: 405 PRVSLLQLAVRDEVFLLDLPRLLEQAEVKGEKEKLPHFIQRLYSDATITKLGYGMSGDLS 464 Query: 88 VL------FYTFGVRVRPVFCTKIASRLTRTYTNQH------------------------ 117 L + + V +L + + Sbjct: 465 SLAATCSTLKGMDKQSQSVVDLLTIDKLLQKSSTDWKKGGLKVDVLSPEQSCEDGGLRQP 524 Query: 118 --GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 GL ++ +LG + K +Q S+W L +EQ+ YAASD L + + + Sbjct: 525 EKGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCLLEVYEKLCK 578 >gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6] gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6] Length = 951 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 32/191 (16%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 D+ AA A DTE GL P +LC + L+ G+ + +L Sbjct: 353 ADLTQALAA--APGFAFDTEASGLRPFASQLCGISLALSPGSAVYVPCGHSSGAQLSLAE 410 Query: 69 M-------LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120 + D + K H +FDI +L G+ V+ + F T IA+ L + GLK Sbjct: 411 VVAALGPFFADPNKAKYAHNAKFDIEMLL-GVGIEVQGLAFDTMIAAALL---GKRAGLK 466 Query: 121 DN-------------LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 D +++L+G +K + + YAA+D L Sbjct: 467 DLAFYELQLPDPMTPIEDLIGRG-TKQISFA---QVPIERA-TPYAAADADMTLRLVHAL 521 Query: 168 TEKLQRLGRSD 178 +L + Sbjct: 522 EPQLATTPKLH 532 >gi|255007833|ref|ZP_05279959.1| putative 3'-5' exonuclease [Bacteroides fragilis 3_1_12] gi|313145540|ref|ZP_07807733.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134307|gb|EFR51667.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 215 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 17/189 (8%) Query: 13 AECAARYVDAIAVDTETLGLMP--RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A + + +D+ET ++ ++Q+S D + R+ P ++ +L Sbjct: 36 AVAYLQSQAILGIDSETRPSFTKGHSHKVALLQISS-DECCFLFRLNMTGLTQP-IIELL 93 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD-NLKELLGI 129 + + K+ + D +L + A + Y G++D +L+++ GI Sbjct: 94 ENPEVIKVGLSLKDDFMMLHKRA---PFN----QQACIELQEYVRPFGIQDKSLQKIYGI 146 Query: 130 ----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 ISK+Q+ S+W AD L+D Q QYAA+D + + L+R G +LA Sbjct: 147 LFREKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH-LLQDLKRTGNYELAPEEET 205 Query: 186 FLMDRAELD 194 +A D Sbjct: 206 VETVKAGSD 214 >gi|21753501|dbj|BAC04356.1| unnamed protein product [Homo sapiens] Length = 758 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61 + + VD E + R R ++Q++ + +A Q Sbjct: 386 EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 443 Query: 62 -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117 + + +L D K+ + D+ L + +I + ++ Sbjct: 444 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 501 Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 GL ++++LG + K QQ S+W L +EQ+ YAA+D L Sbjct: 502 ASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLE 561 Query: 163 LRLQFTEKLQR 173 + + R Sbjct: 562 VHQALCREPAR 572 >gi|319427358|gb|ADV55432.1| 3'-5' exonuclease [Shewanella putrefaciens 200] Length = 301 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%) Query: 22 AIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 I DTET +R L ++Q++ D T + + A + L +L DE Sbjct: 115 VIGFDTET---RASFERGVQHPLSLIQIATHD-TCYLFQHALLDEQLGLLKPVLEDENIL 170 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK-- 133 K+ R D L +G+ V P + ++L + G + + LL I K Sbjct: 171 KVGVGLRSDGQALTREWGINVTPRLDLNWVLAQL--GAGKEMGTRQLVATLLQKRIDKPK 228 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 S+W L+ Q+ YAA D + + +KL+ Sbjct: 229 KVTLSNWQQVPLTSTQIVYAALDALAAQHCFSELIDKLK 267 >gi|294883488|ref|XP_002770959.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|294886213|ref|XP_002771613.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239874097|gb|EER02775.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239875319|gb|EER03429.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 221 Score = 76.6 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 46/209 (22%) Query: 24 AVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKNA--------PNLVGM 69 AVD GL RD +LC+ S +V ++ I +A +L + Sbjct: 2 AVD--FEGLNLSRDGAMSLAQLCL---SSDPRSVYVVDITRLGFHAFHATTHTGTSLKSI 56 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS---RLTRTYTNQ--HGL-KDNL 123 + D + EK+F+ R D+ L+Y F V + VF ++A R R T + GL K + Sbjct: 57 MEDSRIEKVFYDPRNDVDALYYQFNVAPQNVFDLQLAEVALRRARGLTVRYVIGLFKCLI 116 Query: 124 K--ELLGINISKAQ------------------QSSDWSADDLSDEQLQYAASDVVHLHAL 163 EL K ++ L + YA+ DV +L L Sbjct: 117 AQPELFTQPAMKDFARRINDAGKALYEPTHGGSFKVFTQRPLHTSIIVYASHDVRYLLPL 176 Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 + FT++L+ G DL C +RA+ Sbjct: 177 KDLFTKRLREAG-GDLYDRVCKVSTERAQ 204 >gi|302846314|ref|XP_002954694.1| hypothetical protein VOLCADRAFT_106479 [Volvox carteri f. nagariensis] gi|300260113|gb|EFJ44335.1| hypothetical protein VOLCADRAFT_106479 [Volvox carteri f. nagariensis] Length = 756 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 29/121 (23%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV------------------------- 51 R I +DTE L+ R+C++QLS D T Sbjct: 217 LRQERQIGLDTEASPLLCYHGRVCLIQLSVWDDTASPCDGGDDGGSSGCSSGSGGSGGGG 276 Query: 52 ----DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 + +A L G++ D + K+ H G D+ L F V + VF T+ AS Sbjct: 277 GHVWLVDALALRGHVGAALGGLMADPRVVKVLHGGGNDVVWLQRDFRVYLVNVFDTEKAS 336 Query: 108 R 108 + Sbjct: 337 Q 337 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 119 LKDNLKELLGINI--SKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L L ++G+++ KA Q +DW L L+YAA+DV +L L +L LG Sbjct: 408 LASLLSRIVGLDVGAEKAAGQRADWRRRPLPPALLRYAAADVAYLPYLADVLRRELAALG 467 Query: 176 RSDLA 180 + A Sbjct: 468 PTRWA 472 >gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99] gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99] Length = 917 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 20/191 (10%) Query: 2 TTIRVHEG-DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 TTI HE D+ + D IA+DTET L +L + + G + + Sbjct: 319 TTIYTHEELDLWID-KLTNADLIAIDTETTSLNYMEAKLVGISFAIEAGKAAYLPLGHDY 377 Query: 61 KNAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 +AP L +L + + +K+ ++DI++ G++++ + F T + S + Sbjct: 378 LDAPKQLDQAEALAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIAFDTMLESYV 436 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHAL 163 + +H + D + LG ++ + L+ Q+ YAA D L Sbjct: 437 FNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQIDLEIAAPYAAEDADITLRL 496 Query: 164 RLQFTEKLQRL 174 +L++ Sbjct: 497 HQHLWPRLEKE 507 >gi|322788034|gb|EFZ13875.1| hypothetical protein SINV_15885 [Solenopsis invicta] Length = 880 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 65/221 (29%), Gaps = 62/221 (28%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKI-- 78 I+ D E + L + +L +VQ+ G + + A L +L K+ Sbjct: 417 ISFDCEGINLGV-KGQLTLVQIGTMSGQAYVFDLVTCPNLIQAGGLQKLLEHPHVIKVKM 475 Query: 79 -----------------------------------FHYGRFDIAVLFYTFGVRVRPVFCT 103 H R D L+ F + + VF T Sbjct: 476 FYIVYNKQKYIRYIIISQRYANTSTYVKSCLFLQVIHDCRNDSVNLYNQFKITLTNVFDT 535 Query: 104 KIASRLTRTY--------TNQHGLKDNLKEL------LGINIS----KAQQSSDWSADDL 145 + A + + L L + K Q+ WS + Sbjct: 536 QAAHAVLQFQETGKPVYKVKNVNLNTLCDHYGAPCNPLKEQLKNIYRKDQRY--WSRRPM 593 Query: 146 SDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDLATSCCN 185 + + L YA+SDV+ L + + +L + DL C Sbjct: 594 TRDMLIYASSDVLSLVPQVYNAMS-RLIKPEVQDLFAELCE 633 >gi|332025467|gb|EGI65632.1| Exonuclease 3'-5' domain-containing protein 2 [Acromyrmex echinatior] Length = 606 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 12/163 (7%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + D E + P + ++QL+ +G + + RI P L +L + K+ Sbjct: 95 GVLGFDCEWVKEGP----VSLLQLATYNGLIALFRIGKIGYIPPKLKELLASKHILKVGI 150 Query: 81 YGRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQ 136 D + +G RV T +A ++ L E L I + K + Sbjct: 151 SSFEDGHKIVKDYGCRVNGTLDLRT-LAENF--NLPSRKSLAAMCLEYLNIEMDKIIEVR 207 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 DW A L+DEQ+ YAA D + + + +K ++ + Sbjct: 208 CGDWDASTLTDEQVAYAACDALASVIVYHKIMQK-EKEKYTLW 249 >gi|326930167|ref|XP_003211223.1| PREDICTED: probable exonuclease mut-7 homolog [Meleagris gallopavo] Length = 916 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 41/174 (23%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVGML-VDEKREKIFHYGRFDIA 87 R+ ++QL+ D + + + P+++ ML D K+ + D++ Sbjct: 405 PRVSLLQLAVRDEVFLLDLPQLLEQAEVKGEKEKLPHIIQMLYSDATITKLGYGMSGDLS 464 Query: 88 VL------FYTFGVRVRPVFCTKIASRLT--------------------------RTYTN 115 L + + V +L Sbjct: 465 SLAATCSTLKGMDKQSQSVVDLLTIDKLLQKSSIDWKKGSLKVDALSPEQSCEDEGLRQP 524 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + GL ++ +LG + K +Q S+W L +EQ+ YAASD L + + + Sbjct: 525 EKGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCLLEVYEKLCK 578 >gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] Length = 896 Score = 76.2 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 17/193 (8%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--------NLVGMLVD 72 A+D ET L P ++ V +S +G+ I IA NL +L D Sbjct: 323 PIFAIDLETSSLDPHCAKIVGVSISIDEGSGYYIPIAHESDGWQADRDYVLKNLKKLLED 382 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---- 128 + I +FD +VL V P F T +A+ L + L + + LG Sbjct: 383 RSTKIIGQNLKFDYSVLAVNGIHPVVPDFDTMLAAYLLSPDAKRFNLDELAMKFLGYKTI 442 Query: 129 --INISKAQQSS-DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 ++ K Q D++ L + +Y+ D L +K+ ++ Sbjct: 443 KFEDLMKKNQLGDDFTKVPLEEA-ARYSVEDADISLRLSSVLRKKIYEQELEEIFRKVEL 501 Query: 185 NFLMDRAELDLLG 197 + A+L+L G Sbjct: 502 ALIPVLADLELNG 514 >gi|320168640|gb|EFW45539.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864] Length = 385 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 8/165 (4%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 + A+ D E + R ++QL+ +G + + Q P L Sbjct: 199 DGADGQVAPALGFDIEWFAPFIRGQKARP-TALLQLAVENGPCYLFHLIQMQGIPPALQE 257 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELL 127 +L D + K+ + D+ L + ++V ++A+ + L+ +++ L Sbjct: 258 LLADSRIAKVGVGIKNDVTRLVRDYSLKVNGAVDLEELAAVRVVPLRTRWSLQALVQKTL 317 Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + K+ + +W LS E +YAA+D L Sbjct: 318 NCLLDKSSELRLGNWEEAPLSWEMQEYAANDAHASLQTYLALVAM 362 >gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645] gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645] Length = 880 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 74/204 (36%), Gaps = 18/204 (8%) Query: 11 IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN------- 62 + A A V ++ DTET PR L + S G I I + + + Sbjct: 286 LDALVAKLADVKRLSFDTETTSTNPRWADLVGISFSWDQGEGVYIPIRSPEGDVKLDESL 345 Query: 63 -APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLK 120 L +L + EK+ ++D+ VL GV VR F T +A L HGL Sbjct: 346 VLEKLRPILENSAIEKVGQNLKYDLVVL-RGVGVNVRGASFDTMVAHYLLEAGARSHGLD 404 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + L K + + + +Q+ YAA D L +E+++ Sbjct: 405 ELSLRYLQHETVKISELIGTGKNQIRMDQVPVDKVGYYAAEDADIPLRLDPILSERIEAE 464 Query: 175 GRSDLATS-CCNFLMDRAELDLLG 197 G DL T + E++ G Sbjct: 465 GLGDLLTDVELPLIDVLVEMEFNG 488 >gi|115943126|ref|XP_783820.2| PREDICTED: similar to Vexonuclease 3-5 domain-like 1 [Strongylocentrotus purpuratus] gi|115973892|ref|XP_001185100.1| PREDICTED: similar to Vexonuclease 3-5 domain-like 1 [Strongylocentrotus purpuratus] Length = 819 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 22/157 (14%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF--DIAVLFYTFGV 95 +L +V + + +A + +L K+ H RF D+ L++ +G+ Sbjct: 193 KLSLVLVLCDEQVYMFDVLAVPSLFTRKFIDILQATNITKVIHDCRFVSDL--LYHHYGI 250 Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLK-------ELLGINIS------KAQQS----- 137 + VF T++ L + N+ E L I+I + Q Sbjct: 251 ELNSVFDTQVGDILIKRRQYMGDFPRNVSGTTQCILEYLEISIHDIALHLENTQRIEEDE 310 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 S W L ++ A D V+L LR TE+L Sbjct: 311 SSWFQRPLPKVNIRCALLDTVYLLRLREAITEQLMAE 347 >gi|333029171|ref|ZP_08457232.1| 3'-5' exonuclease [Bacteroides coprosuis DSM 18011] gi|332739768|gb|EGJ70250.1| 3'-5' exonuclease [Bacteroides coprosuis DSM 18011] Length = 211 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 11/157 (7%) Query: 23 IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +D+E + ++ ++Q+S D + R+ P L+ +L + +KI Sbjct: 46 LGIDSETRPAFVKGKSY--KVALLQIST-DNICFLFRLNKLG-LVPELIELLENPNIKKI 101 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 R D +L + + + L+ L ISKAQ+ S Sbjct: 102 GLSLRDDFMMLRKRASFKQENCIDLQ--EYVKHFGIKDKSLQKIYAILFKEKISKAQRLS 159 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +W A +L+D Q +YAA+D + E+L++ G Sbjct: 160 NWEAVELTDAQQRYAATDAWSCLRIYNFL-EELKQSG 195 >gi|321470528|gb|EFX81504.1| hypothetical protein DAPPUDRAFT_303477 [Daphnia pulex] Length = 812 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 33/200 (16%) Query: 21 DAIAVDTETL------GLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGMLVD 72 +++D E + G + L ++ L G + I + + L +++ Sbjct: 362 KVVSLDLEGVNVGGNNGEVT----LAVIGL--PSGVIYIFDLITCPAIMSQGMLANLIIS 415 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLK 124 ++ K+ H + D A L + V++ VF T+ A + + L + Sbjct: 416 KEIVKVCHDCKNDSAALNLGWNVKLENVFDTQAAHAVVQLQETGRAVHKVKTTSLNAMCE 475 Query: 125 EL---------LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRL 174 L I K Q W+ L+ + + YAA DV+ L L ++ Sbjct: 476 NYDLPTNPFKELVKTIYKRDQRF-WARRPLTRDMILYAAYDVMPLVPHLYDLLNNTVKPE 534 Query: 175 GRSDLATSCCNFLMDRAELD 194 R L C L+ + D Sbjct: 535 FRPLLEELCAENLLALLQPD 554 >gi|145630437|ref|ZP_01786218.1| peptidyl-tRNA hydrolase [Haemophilus influenzae R3021] gi|144984172|gb|EDJ91609.1| peptidyl-tRNA hydrolase [Haemophilus influenzae R3021] Length = 90 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 A+ A+A+DTE + + +L ++QL G+ I +A + + +L + K Sbjct: 26 LAQMKSAVALDTEFMRVSTYFPKLGLIQLYDGELVSLIDPLA--ITDFSPFIALLANPKV 83 Query: 76 EK 77 K Sbjct: 84 LK 85 >gi|312068949|ref|XP_003137453.1| hypothetical protein LOAG_01867 [Loa loa] gi|307767377|gb|EFO26611.1| hypothetical protein LOAG_01867 [Loa loa] Length = 911 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 46/209 (22%) Query: 18 RYVDAIAVDTE----TLGLMPRRDRLCIVQLSPG--DGTVDII---RIAAGQKNAPNLVG 68 D I +DTE + +R+ + Q+ VD+I + ++ Sbjct: 411 EEADLIGIDTEWKPLFMCT---SERVALFQICVRRCSYLVDVITLEDVLTKEQWTQFFKA 467 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVR-----VRPVFC---------TKIASRLTRTYT 114 + D K+ D+ VL +F ++ V C T + L ++ Sbjct: 468 LFSDSPAIKLGFDFLNDLRVLHASFPYLQPLEEMKNVICVLKLVKNLLTSNPAFLDFGHS 527 Query: 115 NQHGLK--------------------DNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 L D + +LG + K +Q +W+ L EQ++YAA Sbjct: 528 ANLSLSSRNENLLDAVSDETVHFRLTDLCQMVLGEALDKTEQIGNWAMRPLRREQMKYAA 587 Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSC 183 D L L + + +R D C Sbjct: 588 MDGYCLLDLYDKLKIRAEREYNMDWTKHC 616 >gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] Length = 971 Score = 75.8 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 79/230 (34%), Gaps = 42/230 (18%) Query: 6 VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--- 60 V + AR V+A + DTET L LC V L+ G I + Sbjct: 358 VQTEEALDRWIARAVEAGSVGFDTETSSLSATHAGLCGVSLAVGPNEACYIPLTHEHEPQ 417 Query: 61 -----------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 K L +L + K+ ++D+AV+ G+RV Sbjct: 418 AGEGGLFGVPGEAREPIQQLDKAKALAKLKVLLENPSVLKVLQNAKYDLAVMARR-GIRV 476 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS---------KAQQSSDWSADDLSDE 148 P T + S + + HG+ + + LG + K+Q+S + L Sbjct: 477 APYDDTMLISYVLEGGLHGHGMDELARLHLGHDPVPFKSVAGTGKSQKS--FRHVALKPA 534 Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD-RAELDLLG 197 QYAA D L +L R G S + + L AE++ G Sbjct: 535 -TQYAAEDADVTLRLWRLLKPRLAREGLSTVYETLERPLPAVLAEMETAG 583 >gi|329956986|ref|ZP_08297554.1| 3'-5' exonuclease [Bacteroides clarus YIT 12056] gi|328523743|gb|EGF50835.1| 3'-5' exonuclease [Bacteroides clarus YIT 12056] Length = 210 Score = 75.8 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 21/180 (11%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + +D+E ++ ++Q+S + + R+ P ++ Sbjct: 36 AVAYLKQCSILGIDSETRPSFTKGQSH--KVALLQISSEEHCF-LFRLNLTGLTLP-IIM 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L + K+ R D +L + A + Y G L+ Sbjct: 92 LLENPGVTKVGLSLRDDFMMLHKRAPFE-------QRACIELQEYVRTFGIQDKSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 L ISK+Q+ S+W A+ L+ Q QYAA+D + + E L+R G ++A Sbjct: 145 AILFKEKISKSQRLSNWEAEVLTPSQQQYAATDAWACLNIYNRLQE-LKRTGDFEMAAEE 203 >gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] Length = 949 Score = 75.8 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 62/193 (32%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76 A+A DTET L L + S G I ++ + A E Sbjct: 377 KAVAFDTETTTLNEMDAELVGLSFSYRKGLAYYIPLSEDRSEAIQTLEIFREFFEKEDVS 436 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------GLKDN-LKEL 126 K+ H +FD +L +F T IA L K L+ L Sbjct: 437 KVAHNLKFDYKILQQYGFSLKGLLFDTMIAHYLLNPDGKHVIDYLSEIYLNYKPVALESL 496 Query: 127 LGINISKAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCC 184 +G L+ +EQ YAA D L F +L++ DL Sbjct: 497 IGKKGKNQLTF-----RSLTVEEQTNYAAEDADITWQLYEVFAPQLKKENLEDLFYKVEM 551 Query: 185 NFLMDRAELDLLG 197 L A+++L G Sbjct: 552 PLLRVLAKMELEG 564 >gi|167555226|ref|NP_001107878.1| exonuclease 3'-5' domain-containing protein 2 [Danio rerio] gi|166796362|gb|AAI59254.1| Zgc:175195 protein [Danio rerio] Length = 617 Score = 75.8 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 29/193 (15%) Query: 21 DAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK--NAPNLVGMLVDE 73 + +D E + + R + ++QLS G ++R+ A Q +L+ +L D+ Sbjct: 104 PVLGLDCEWVKRVRVSVKGRVSAVSLLQLSSFTGRCVLVRLLAFQNAQLPKSLIVLLRDQ 163 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCT----KIASRLTRT--YTNQHGLKDNLKELL 127 + K+ D L G+ + CT +A R ++ TN LK ++LL Sbjct: 164 RVLKVGVGCYEDGKRLAQDHGLTLS---CTVDLRYLALRRSKQAVLTNGLSLKSLAEDLL 220 Query: 128 GINISKA--QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK-----LQRLGRSDLA 180 + + K+ + SDW A++LS EQ+ YAA D AL L G + Sbjct: 221 NVTLDKSVELRCSDWEAEELSPEQITYAARDAQISIALFFHLLGMNTERHLPAEG--EAV 278 Query: 181 ----TSCCNFLMD 189 ++CC L+D Sbjct: 279 FLHLSACCQGLVD 291 >gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580] gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580] Length = 951 Score = 75.8 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 73/208 (35%), Gaps = 34/208 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQKNAPNL------ 66 A A D ET GL P D +V L G G ++ A + Sbjct: 369 AEAQGFAAFDCETTGLNPLYD--SLVGFSLSLKAGTGIYVPLKAPAPELGEQPFAVMPLA 426 Query: 67 --VGMLV----DEKREKIFHYGRFDIAVLFYTFGVRVR---PVFCTKIASRLTRTYTNQH 117 +L +++ + H G+FD VL T GV R +F T IA+ L Sbjct: 427 AAKKLLARLWNNKELTLVLHNGKFDYQVL-RTAGVFTRAGCRLFDTMIAAWLLEPDNLSF 485 Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 GL++ + LG+ + K + A L YAA D L + Sbjct: 486 GLENLTEAQLGLQGLDYKDVVPKGCTFA---AVSLPQA-TAYAAEDADFTLQLYHVYKPA 541 Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLG 197 L++ + L + + A+++ G Sbjct: 542 LEQANLTTLFETLEMPLMPLLADMEAQG 569 >gi|301763301|ref|XP_002917070.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like [Ailuropoda melanoleuca] gi|281349384|gb|EFB24968.1| hypothetical protein PANDA_005241 [Ailuropoda melanoleuca] Length = 622 Score = 75.8 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 22/166 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + + L ++Q++ G ++R+ G+ L+ MLVD Sbjct: 100 LEDCPVLGIDCEWVNSEGKASPLSLLQVASPSGFCVLVRLPKLICGGKTLPKTLLDMLVD 159 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG---------LKDNL 123 K+ D + L +G+ V+ R + G LK Sbjct: 160 GTVFKVGVGCSEDASRLLRDYGLVVKGCLD-------LRYLAVRQGNNLLCNGLSLKSLA 212 Query: 124 KELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + +L + K+ + S+W A++L+++Q+ YAA D AL L Sbjct: 213 ETVLNFPLDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLHL 258 >gi|113969320|ref|YP_733113.1| 3'-5' exonuclease [Shewanella sp. MR-4] gi|113884004|gb|ABI38056.1| 3'-5' exonuclease [Shewanella sp. MR-4] Length = 299 Score = 75.8 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 6/156 (3%) Query: 21 DAIAVDTET-LGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + DTET P + L +VQL+ D T + + A + L +L +E+ K+ Sbjct: 117 SVLGFDTETRASFEPGVQHPLSLVQLATSD-TCYLFQRAVLGERLAELKPLLENERILKV 175 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQ 136 R D L + ++V P A + G + + LL I K Sbjct: 176 GIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGA-GKEMGTRQLVAALLHKRIDKPKKIT 234 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 S+W LS Q+QYAA D + + Q +KLQ Sbjct: 235 LSNWQQVPLSQAQIQYAALDTLAANLCFWQLIDKLQ 270 >gi|325282020|ref|YP_004254562.1| 3'-5' exonuclease [Odoribacter splanchnicus DSM 20712] gi|324313829|gb|ADY34382.1| 3'-5' exonuclease [Odoribacter splanchnicus DSM 20712] Length = 203 Score = 75.8 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 20/161 (12%) Query: 23 IAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 + DTET R ++ ++QL+ + V + R+ P LV +L + Sbjct: 48 LGFDTET------RPSFRKGEIYKVSLLQLAVPE-RVFLFRLNKCG-FQPALVRLLASPR 99 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINISK 133 KI R D L + + + + G+ ISK Sbjct: 100 IIKIGVGIRDDNRNLRKLADFTPASFVDLQ---EYAGYFGIEDKSFSKLMAIIFGVKISK 156 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 Q++S+W A L++ Q++YAA+D + + + Sbjct: 157 RQRTSNWEAPALTEAQIRYAATDAWGALKMYQRLAAFAEEE 197 >gi|224009215|ref|XP_002293566.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220970966|gb|EED89302.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 291 Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 28/177 (15%) Query: 23 IAVDTETLGLMPRRDRLC---IVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKREK 77 IA D E + L RL IV + V +I + K + + K Sbjct: 53 IAFDCEGVNL----SRLGSVEIVSICFSSSEVYLIDFGKEKCPKIVEAVKELFECSTLTK 108 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL---KDN--LKELLGINI- 131 I H R D L++ G+++ V T + + G K+ GI + Sbjct: 109 IIHDCRMDFDALYHNHGIKLVNVHDT-------SAFHDFIGYEKGKNLNDTLSYYGIRVN 161 Query: 132 ---SKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 K+ S+ W+A L+ + + +A+SDV L L + ++ +S Sbjct: 162 TERDKSVYKSNPNFWAARPLTKKMIDWASSDVDKLFQLAEKQLGRISAAQKSSAVEK 218 >gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 75/205 (36%), Gaps = 19/205 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + AVDTET L R R+ V + G I I AP L Sbjct: 345 LKAAPRFAVDTETTSLDYRLARIVGVSFALQAGEAFYIPIGHDYMGAPEQLDAQFVLDIL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + KI + ++D V F T +AS + +HG+ D + Sbjct: 405 KPILENPAIGKIGQHMKYDAHVFNNHGISLAGWAFDTMLASYVLNPTATRHGMDDLAQYY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSD-- 178 L + +Q + A L+ Q++ YAA D L F+++L ++ R + Sbjct: 465 LNYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWRLYEHFSKELAKIPRLERL 524 Query: 179 LATSCCNFLMDRAELDLLGWENVDI 203 L + E++ G +DI Sbjct: 525 LLDAEMPAAQVLYEMENNGI-RLDI 548 >gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01] gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01] Length = 682 Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 30/193 (15%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV-DEKREK 77 + VD ET GL P R ++ L+ G V + + + +E Sbjct: 146 RQPVLGVDLETTGLDPHTSRPRLLSLAMP-GAVVVFDLFGVP--LEVFYPLFSREEGPLL 202 Query: 78 IFHY----------GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + H ++ G R ++ T +A ++ LKD Sbjct: 203 VGHNLKFDLLFLLKAG-----VWRASGKR---LWDTGLAHQVLHAQARMPALKDLA---- 250 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186 + K Q+SDW LS EQ+ YA D L + E+ R R + Sbjct: 251 -PGLDKTLQTSDWGG-PLSSEQVAYAGLDAAVPLVLYREQRER-ARTLRLEKVLEVERRA 307 Query: 187 LMDRAELDLLGWE 199 L A ++L G Sbjct: 308 LPAVAWMELKGVP 320 >gi|195475951|ref|XP_002090246.1| GE12998 [Drosophila yakuba] gi|194176347|gb|EDW89958.1| GE12998 [Drosophila yakuba] Length = 625 Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 36/197 (18%) Query: 10 DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54 D+P EC + I +D+E + + ++LC++Q++ G I Sbjct: 404 DLPDECLIIVDKAEQFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCVLQIATGHNVYLID 463 Query: 55 RIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFG-----VRVRPVFC--- 102 +A + + + K+ D++VL + Sbjct: 464 CLARESLCEEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSLPLHLRLQMPHHYLDLRN 523 Query: 103 -------TKIASRLTRTYTNQHG--LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 + L N+ G L D LG ++K+ Q S+W+ L EQ+ YA Sbjct: 524 LWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYA 583 Query: 154 ASDVVHLHALRLQFTEK 170 A D L + + Sbjct: 584 AMDARCLLLIYNTLIAR 600 >gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7] gi|89517759|gb|EAS20415.1| DNA polymerase I [Flavobacteria bacterium BBFL7] Length = 946 Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 70/198 (35%), Gaps = 27/198 (13%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEK 74 ++ DTET GL P L + S G + I ++ A L Sbjct: 371 QQSSVCFDTETTGLDPLTAELVGIAFSWEKGKGFYLPIPEDREAAQVIVDQLKPFFESAS 430 Query: 75 REKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130 EK+ ++DI VL GV V+ P+F T +A L +H + + L Sbjct: 431 IEKVGQNLKYDIKVLDKY-GVDVKGPMFDTMLAHYLINP-DMRHNMDVLAETYLNYTPQS 488 Query: 131 ----ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 I K + LS ++Q +YA D L+ FT +L G L Sbjct: 489 IVELIGKK------GKNQLSMRDVDLEKQKEYAVEDADITLQLKEHFTPELASAGTDKLF 542 Query: 181 TS-CCNFLMDRAELDLLG 197 L A +++ G Sbjct: 543 KDIEMPLLDVLAAMEIEG 560 >gi|195580608|ref|XP_002080127.1| GD21649 [Drosophila simulans] gi|194192136|gb|EDX05712.1| GD21649 [Drosophila simulans] Length = 422 Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 52/205 (25%) Query: 10 DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54 D+P EC + I +D+E + + ++LC++Q++ G I Sbjct: 201 DLPDECLIIVDKADQFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCVLQIATGHNVYLID 260 Query: 55 RIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 +A + + + + K+ D++VL + P+ ++ ++ Sbjct: 261 CLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSL-----PL---QLRLQMP 312 Query: 111 RTYTN-----------QHG--------------LKDNLKELLGINISKAQQSSDWSADDL 145 Y + + G L D LG ++K+ Q S+W+ L Sbjct: 313 HHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPL 372 Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170 EQ+ YAA D L + + Sbjct: 373 RREQILYAAIDARCLLLIYNTLIAR 397 >gi|291280801|ref|YP_003497635.1| hypothetical protein DEFDS_P259 [Deferribacter desulfuricans SSM1] gi|290755503|dbj|BAI81879.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 420 Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 66 LVGMLVDEKREKIFHYG-RFDIAVLFYTFGVRVRP------------VFCTKIASR--LT 110 L+ + + + + +FH G FDI VL+ + + + + T + L Sbjct: 135 LLDLFIKQNNQLVFHNGISFDIRVLYDFYSIFHKDFSDLLSYIKDNLLIDTMKIYKDKLQ 194 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + LK +K+ + ++ K Q DW+ + L YAA DV+ L + + E+ Sbjct: 195 EPGEKKSNLKYLVKKYINYDLDKTYQKYDWTIRPIDKNALVYAAFDVIFLEKIYDKMMEE 254 Query: 171 LQ 172 ++ Sbjct: 255 IK 256 >gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] Length = 948 Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 73/205 (35%), Gaps = 27/205 (13%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKREK 77 ++ DTET GL P L + S G + + A L+ +L ++ EK Sbjct: 376 SVCFDTETTGLNPLTAELVGIAFSWETGKGFYVPFPEDKNEAQELIEVLRPFFENDNIEK 435 Query: 78 IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------ 130 I ++DI VL V V+ +F T +A L +H + + L Sbjct: 436 IGQNLKYDIKVLAKY-NVEVKGKLFDTMLAHYLINP-DMRHNMDVLAETYLNYTPISITE 493 Query: 131 -ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 I K + LS D+Q +YA D L+ F ++L L Sbjct: 494 LIGKK------GKNQLSMREVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFNDI 547 Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207 L A ++L G F +S Sbjct: 548 ELPLLRVLAAMELEGINLDKDFLNS 572 >gi|195051841|ref|XP_001993181.1| GH13217 [Drosophila grimshawi] gi|193900240|gb|EDV99106.1| GH13217 [Drosophila grimshawi] Length = 632 Score = 75.4 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 52/203 (25%) Query: 10 DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54 D+P +C + I +D E + + +++LC++Q++ I Sbjct: 410 DLPDKCLIIVDTAPIFEHMLQHLQREQIIYMDAEWMQNVCVQNQLCLLQIATTHNVYLID 469 Query: 55 RIAAGQKNAPNLVGM----LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 +A + + + + K+ D++VL + P+ ++ + Sbjct: 470 CLANQALHEDHWRALGATVFNNVNILKVGFSMLNDLSVLQRSL-----PL---QLRLHMP 521 Query: 111 RTYTN-----------QHG--------------LKDNLKELLGINISKAQQSSDWSADDL 145 Y + +HG L D LG ++KA Q S+W+ L Sbjct: 522 HHYLDLRTVWLELKKQRHGIELPFGNLNRAGDALTDLTMLCLGKKLNKANQCSNWANRPL 581 Query: 146 SDEQLQYAASDVVHLHALRLQFT 168 EQ+ YAA D L + T Sbjct: 582 RREQILYAAIDARCLLHIYDCLT 604 >gi|291224294|ref|XP_002732140.1| PREDICTED: Probable exonuclease mut-7 homolog [Saccoglossus kowalevskii] Length = 1166 Score = 75.4 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 41/201 (20%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLC------IVQLSPGDGTVDIIRIAAGQ-----K 61 AE + I +D+E P +C ++QL+ D + + Q Sbjct: 459 AEILFKPGAIIGIDSE---WRPAFGPICEPVKVSLLQLASIDAVFILDMMTLSQCVDVDI 515 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQ 116 ++ + K+ + DI +LF ++ + ++ + + +R + + + Sbjct: 516 LKDFMLKLFTTHDILKLGYGIDGDIKMLFKSYPLMRNAADLQRIVDLSVLTRNIQKESPE 575 Query: 117 H----------------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 GL + ++ LG ++K ++ SDW L QL YAA Sbjct: 576 LLQNSSTTEDASGEGSGKKGKEKGLSELVQRCLGKPLNKMERLSDWERRPLRQAQLIYAA 635 Query: 155 SDVVHLHALRLQFTEKLQRLG 175 D L + K++ G Sbjct: 636 LDAYCLLEVYDHIRNKVKESG 656 >gi|307204165|gb|EFN83006.1| Exonuclease 3'-5' domain-like-containing protein 2 [Harpegnathos saltator] Length = 643 Score = 75.4 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 19/158 (12%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + D E + P + ++QL+ +G + RI L +L +++ K+ Sbjct: 114 GVLGFDCEWVNEGP----VSLLQLATFNGVCALFRIGKIGYIPDKLKELLSNKRILKVGV 169 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH------GLKDNLKELLGINISK- 133 D + G +V RT L E LG+ + K Sbjct: 170 ASFEDGQKILKDHGCQVSGTLD-------IRTLAESIQLPSLKSLAAMSLEYLGLEMDKI 222 Query: 134 -AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + DW A L+DEQ+ YAA D + + + + Sbjct: 223 IELRCGDWEASTLTDEQVTYAACDAIASIFIYQKVKQM 260 >gi|120597845|ref|YP_962419.1| 3'-5' exonuclease [Shewanella sp. W3-18-1] gi|120557938|gb|ABM23865.1| 3'-5' exonuclease [Shewanella sp. W3-18-1] Length = 301 Score = 75.4 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%) Query: 22 AIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 I DTET +R L ++Q++ D T + + A + L +L DE Sbjct: 115 VIGFDTET---RASFERGVQHPLSLIQIATHD-TCYLFQHALLAEQLGLLKPVLEDENIL 170 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK-- 133 K+ R D L +G+ V P + ++L + G + + LL I K Sbjct: 171 KVGVGLRSDGQALTREWGINVTPRLDLNWVLAQL--GAGKEMGTRQLVATLLQKRIDKPK 228 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 S+W L+ Q+ YAA D + + +KL+ Sbjct: 229 KVTLSNWQQVPLTSTQIVYAALDALAAQHCFSELIDKLK 267 >gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83] gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83] Length = 926 Score = 75.4 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 20/196 (10%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEK 74 + DTET R + + L G I + G++ L + D Sbjct: 352 ATPCFSFDTETDSKDALRANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRPLFADTA 411 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG----- 128 K+ ++DI VL G+ VR +F T IA L +H + + + LLG Sbjct: 412 IGKVGQNMKYDIQVLSRY-GIEVRGQLFDTMIAHYLL-FPDLRHNMDEMAETLLGYCTVH 469 Query: 129 ----INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 + K + L YA D L + L G + L S Sbjct: 470 YSDLVGSDKQEVHI--RQVPL-QNLADYAMEDADITWQLYERLNAMLSEAGMTSLFESIE 526 Query: 184 CNFLMDRAELDLLGWE 199 + A ++ G + Sbjct: 527 MPLVPVLANMERSGVK 542 >gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] Length = 893 Score = 75.4 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 75/208 (36%), Gaps = 22/208 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------AAGQKNAPN----LV 67 R +A+DTET G P R L V +G + + Q + P+ L Sbjct: 312 RSAGLLAIDTETTGTDPMRADLVGVSFCLKEGKAFYLPVGHHYLGVPAQVSWPDARDVLK 371 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D+ K+ ++D VL GV + + F T IAS + QH L + Sbjct: 372 DVLEDDAVLKVGQNIKYDACVLKRH-GVSLSGISFDTMIASYVINPGLRQHNLDALAQRY 430 Query: 127 LGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + K + + + L +Y+ D LR ++++ L Sbjct: 431 LNHKMISYKDVVGKGKNARGFEEVSLEKA-CEYSCEDADMTFRLRRILAKQIRDEKNEAL 489 Query: 180 ATS-CCNFLMDRAELDLLGWE-NVDIFS 205 L ++++ G + + +F Sbjct: 490 FNELEMKLLPVLLDMEMTGIKIDTALFE 517 >gi|298481453|ref|ZP_06999645.1| 3'-5' exonuclease domain protein [Bacteroides sp. D22] gi|295086916|emb|CBK68439.1| Ribonuclease D [Bacteroides xylanisolvens XB1A] gi|298272317|gb|EFI13886.1| 3'-5' exonuclease domain protein [Bacteroides sp. D22] Length = 222 Score = 75.0 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 21/178 (11%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + I +D+E ++ ++Q+S + + R+ P LV Sbjct: 36 AVAYLQSRSVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVD 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L + K+ + D +L P T+ + + Y Q G L+ Sbjct: 92 LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L ISK+Q+ S+W AD LSD Q QYAA+D + ++L++ G ++A Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGDWEIAA 201 >gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] Length = 920 Score = 75.0 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 76/194 (39%), Gaps = 21/194 (10%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKR 75 +++DTET + L + + + + I + ++ A V + +E Sbjct: 347 SKVLSLDTETTSTDTMQAELVGLSFAIEEKKAFYVAIPSDRREAEKFVNIFRPLYENENI 406 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D VL G+ ++ +F T IA L + + H + + LLG ++I Sbjct: 407 LKVGQNIKYDYEVLAQY-GIDIKGKMFDTMIAHYLIQPELH-HNMDYMAETLLGYKTVHI 464 Query: 132 S-----KA-QQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 K Q + DLS + +YA+ D L KL+ + DL Sbjct: 465 DELIGAKGKHQK---NMRDLSPTDIYEYASEDADITLQLYKVLEPKLKEVNAEDLFWKIE 521 Query: 184 CNFLMDRAELDLLG 197 + A++++ G Sbjct: 522 MPLVRVLADMEMNG 535 >gi|29349740|ref|NP_813243.1| hypothetical protein BT_4332 [Bacteroides thetaiotaomicron VPI-5482] gi|253569894|ref|ZP_04847303.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384013|ref|ZP_06993574.1| 3'-5' exonuclease domain protein [Bacteroides sp. 1_1_14] gi|29341650|gb|AAO79437.1| 3'-5' exonuclease-like protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840275|gb|EES68357.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298263617|gb|EFI06480.1| 3'-5' exonuclease domain protein [Bacteroides sp. 1_1_14] Length = 216 Score = 75.0 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 26/197 (13%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + +D+E ++ ++Q+S D + R+ P LV Sbjct: 36 AVAYLQSQPILGIDSETRPSFTKGQSH--KVALLQISS-DECCFLFRLNMTGLTQP-LVD 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L + K+ + D +L P T+ + + Y Q G L+ Sbjct: 92 LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 L ISK+Q+ S+W AD LSD Q QYAA+D + ++L+R G ++ Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKRTGNYEV---- 199 Query: 184 CNFLMDRAELDLLGWEN 200 L E+D N Sbjct: 200 -ESLPVEEEVDANAPAN 215 >gi|195328901|ref|XP_002031150.1| GM25821 [Drosophila sechellia] gi|194120093|gb|EDW42136.1| GM25821 [Drosophila sechellia] Length = 532 Score = 75.0 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 +F T A++ + L LK L +++ K+ Q +DW L + + YA D Sbjct: 1 MFDTHRAAKALNM--ARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHF 58 Query: 160 LHALRLQFTEKLQRL 174 L + + T L + Sbjct: 59 LIYVYERMTNDLLQQ 73 >gi|311748079|ref|ZP_07721864.1| 3'- 5' exonuclease domain protein [Algoriphagus sp. PR1] gi|126574723|gb|EAZ79104.1| 3'- 5' exonuclease domain protein [Algoriphagus sp. PR1] Length = 201 Score = 75.0 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 7/162 (4%) Query: 12 PAECAARYVDAIAVDTETLGLMPRR--DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 AE ++ I DTET R +++ ++QLS + R+ + +L + Sbjct: 35 AAEFLSKQ-SIIGFDTETKPAFRRGVINQVALLQLSTA-TQAFLFRLNEIGEFPDSLRNI 92 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 L E K+ DI L F + L + + G+++ +L Sbjct: 93 LEKESIVKVGAAVHDDIKGLAKLTDSFFPLSFFD--LNDELKKVGFHNVGVRNLCAMVLK 150 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + ISK++Q S+W A+ L+++Q +YAA+D + + ++ Sbjct: 151 MRISKSEQVSNWEAEVLTEKQQRYAATDAWACLEVFKKLKKE 192 >gi|237715608|ref|ZP_04546089.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408617|ref|ZP_06085163.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646256|ref|ZP_06723909.1| 3'-5' exonuclease [Bacteroides ovatus SD CC 2a] gi|294805802|ref|ZP_06764678.1| 3'-5' exonuclease [Bacteroides xylanisolvens SD CC 1b] gi|229444317|gb|EEO50108.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353482|gb|EEZ02576.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638389|gb|EFF56754.1| 3'-5' exonuclease [Bacteroides ovatus SD CC 2a] gi|294446978|gb|EFG15569.1| 3'-5' exonuclease [Bacteroides xylanisolvens SD CC 1b] Length = 222 Score = 75.0 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 21/178 (11%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + I +D+E ++ ++Q+S + + R+ P LV Sbjct: 36 AVAYLQSRSVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVD 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L + K+ + D +L P T+ + + Y Q G L+ Sbjct: 92 LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 L ISK+Q+ S+W AD LSD Q QYAA+D + ++L++ G ++A Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGDWEIAA 201 >gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] Length = 944 Score = 75.0 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 66/194 (34%), Gaps = 27/194 (13%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEKREKI 78 IAVDTET L L + ++ G I A + L +L + KI Sbjct: 373 IAVDTETTSLDTFEAELAGISIAVETGKARFISFAQSALDRDKTVEILKPLLENPSLPKI 432 Query: 79 FHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG--------- 128 ++D+ VL G+ + PV F T +AS + +H L D LG Sbjct: 433 GQNLKYDMLVLKKY-GIELSPVAFDTMLASYVLNPE-EKHNLDDLAAHHLGYRTTTFDEL 490 Query: 129 INISKAQQS---SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS--C 183 + K +Q D ++ YA D L F +KL Sbjct: 491 VGTGKTKQHIFEVD------PEKLSDYACQDADLALQLEGVFRKKLDGETELLWLCENIE 544 Query: 184 CNFLMDRAELDLLG 197 + AE++ G Sbjct: 545 FPLVTVLAEMEYAG 558 >gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1] Length = 925 Score = 75.0 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 63/192 (32%), Gaps = 39/192 (20%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------AAGQKNAPN----- 65 A + +A DTET GL P R L V L+ G I I A G Sbjct: 330 ATRIGQVAFDTETTGLDPLRAELVGVSLATAPGRACYIPIKHDAGPAQGSLLLDPSPAAA 389 Query: 66 -------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 L +L D KI H ++D+ V+ G+ V T + S + Sbjct: 390 GPDILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA-GLTVTAFDDTMLLSYVLDG 448 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHA 162 ++ HG+ + K L + K +D + L L YAA D Sbjct: 449 ASHGHGMDELAKLHLDHDTIK---FADVCGTGKNQITFDRVPLDKA-LAYAAEDADITLR 504 Query: 163 LRLQFTEKLQRL 174 L +L Sbjct: 505 LHGALKARLLAE 516 >gi|146294019|ref|YP_001184443.1| 3'-5' exonuclease [Shewanella putrefaciens CN-32] gi|145565709|gb|ABP76644.1| 3'-5' exonuclease [Shewanella putrefaciens CN-32] Length = 298 Score = 75.0 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%) Query: 22 AIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 I DTET +R L ++Q++ D T + + A + L +L DE Sbjct: 115 VIGFDTET---RASFERGVQHPLSLIQIATHD-TCYLFQHALLAERLGLLKPVLEDENIL 170 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK-- 133 K+ R D L +G+ V P + ++L + G + + LL I K Sbjct: 171 KVGVGLRSDGQALTREWGINVTPRLDLNWVLAQL--GAGKEMGTRQLVATLLQKRIDKPK 228 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 S+W L+ Q+ YAA D + + +KL+ Sbjct: 229 KVTLSNWQQVPLTSTQIVYAALDALAAQHCFSELIDKLK 267 >gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] Length = 920 Score = 75.0 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 19/195 (9%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDE 73 R +++DTET L + + + + I A ++ A +V + D Sbjct: 345 RTNKILSLDTETTSTNAIEAELVGLSFAVEERKAFYVAIPANREEALKIVAIFKPLYEDP 404 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---IN 130 + K+ ++DI VL + P+F T IA L + +H + + LG ++ Sbjct: 405 EILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPEL-RHNMDYMAEVYLGYRTVH 463 Query: 131 ISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 I + Q + DLS + +YA D L+ KL G + L Sbjct: 464 IEELIGPRGRNQK---NMRDLSPTDIYEYACEDADITLRLKNVLEPKLDEAGVARLFHDI 520 Query: 183 CCNFLMDRAELDLLG 197 + A+++L G Sbjct: 521 EMPLVGVLADMELNG 535 >gi|71745756|ref|XP_827508.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70831673|gb|EAN77178.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 390 Score = 75.0 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 20/184 (10%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAG 59 + HE A + + +IA+D E T + R+ +VQ S V + + Sbjct: 58 VDTHEKLKEAVTSLQGARSIALDIEAFCTTDQAKQLGRISLVQACSDAKPVVFLFDVLTL 117 Query: 60 QKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTY 113 + ++ +L D + K+F R D+ L GV+ V ++ A + R+ Sbjct: 118 TPDVFVKDMQSLLSDREIRKLFFDCRRDVEALSCQLGVKPEGVLDLQVFFTAIQWKLRSV 177 Query: 114 TNQHGLKDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163 + G+ LK + G+ + W L D L+YAA DV H+ L Sbjct: 178 NRRSGMGYVLKSVAGLTRQEGDSAVQTAMTLGNRPVWDIRPLPDHFLEYAAGDVRHILLL 237 Query: 164 RLQF 167 Sbjct: 238 SNYL 241 >gi|261331708|emb|CBH14702.1| zinc finger protein, predicted [Trypanosoma brucei gambiense DAL972] Length = 390 Score = 74.6 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 20/184 (10%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAG 59 + HE A + + +IA+D E T + R+ +VQ S V + + Sbjct: 58 VDTHEKLKEAVTSLQGARSIALDIEAFCTTDQAKQLGRISLVQACSDAKPVVFLFDVLTL 117 Query: 60 QKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTY 113 + ++ +L D + K+F R D+ L GV+ V ++ A + R+ Sbjct: 118 TPDVFVKDMQSLLSDREIRKLFFDCRRDVEALSCQLGVKPEGVLDLQVFFTAIQWKLRSV 177 Query: 114 TNQHGLKDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163 + G+ LK + G+ + W L D L+YAA DV H+ L Sbjct: 178 NRRSGMGYVLKSVAGLTRQEGDSAVQTAMTLGNRPVWDIRPLPDHFLEYAAGDVRHILLL 237 Query: 164 RLQF 167 Sbjct: 238 SNYL 241 >gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 751 Score = 74.6 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI-IRIAAG--- 59 I+ + R+ A A DTET G+ +D + V L+ + I +A Sbjct: 120 IQTEDQFKALLADLRHEPAFAFDTETTGVDVYQDVIVGVSLTLPRAGYHVYIPVAHNNAG 179 Query: 60 -----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L L D K+ H +FDI +L G+R+R + T IA ++ Sbjct: 180 PQLRRSYVLNGLKRYLTDPTVGKVLHNAKFDIHMLLRH-GMRMRGLAHDTMIAMKILNEN 238 Query: 114 TNQHGLKDNLKEL---LGINISKAQQSSD-WSAD-----DLSDEQLQYAASDVVHLHALR 164 LK+ G + ++ D + L D L YAA D L Sbjct: 239 EPSVALKNLATRYGKFFGFD-GESHTFEDLFGKACFADVPL-DMALIYAAKDTHLTWELY 296 Query: 165 L-QFTEKLQRLGRSDLATSCCNFLMDR-AELDLLGWENVDIFS 205 Q +R L N L+D E++ G+ F+ Sbjct: 297 KWQMEHLTKREDLLKLYRELENPLVDICVEMEQTGFAVDTAFA 339 >gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] Length = 914 Score = 74.6 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 82/231 (35%), Gaps = 41/231 (17%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQL------------------SP 46 ++HE + A AA + +DTET L P + L + L + Sbjct: 302 QLHE--LVAILAADPAPLV-IDTETTSLDPLQAELVGISLTLAAPGSDESEAKASRTAAG 358 Query: 47 GDGTVDIIRIAAGQKNAP-------------NLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 +G + IA +++ L +L D++R K+ H ++D+ VL Sbjct: 359 ENGACWYLPIAHRREDGSAAANQLPLAEVRRALAPLLADDRRLKLGHNLKYDLQVLHRHD 418 Query: 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD------LSD 147 P+ T IAS L HGL +ELL ++ + +D Sbjct: 419 LPLAPPLADTMIASYLIDPSRRSHGLDVLSEELLQRRLTSFAEVTDRDRRPEAFAHVAPA 478 Query: 148 EQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRAELDLLG 197 Y+ DV L F KL L ++L L A ++ +G Sbjct: 479 AAAAYSCEDVAATRLLWQLFQPKLAELELAELFYQVEITLLPILARMERVG 529 >gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] Length = 1060 Score = 74.6 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 69/223 (30%), Gaps = 46/223 (20%) Query: 17 ARYVDAIAVDTETLGLMPRRD------------RLCIVQLSP--------------GDGT 50 A IAVDTET L R R C + L+ G+G Sbjct: 453 AEEAGVIAVDTETDSLDAHRAGLVGVSLAVATGRACYIPLAHVQAAKVQADATDLFGEGA 512 Query: 51 V--DIIRIAAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104 D++ GQ L +L + K+ ++D VL G+ V P T Sbjct: 513 APSDVVEPVPGQIPLKEAVARLKPLLENPGVLKVGQNLKYDWVVLARY-GIEVAPFDDTM 571 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAAS 155 + S + HG+ + + LG SD + D+ YAA Sbjct: 572 LISYVLDAGKGGHGMDELARRHLGHQP---ITFSDVAGTGRNKVTFDRVAIDKATAYAAE 628 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 D L +L R + + L A ++ G Sbjct: 629 DADVTLRLWRMMKPRLVAEHRVAVYETLERPLLPVIARMEQRG 671 >gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17] gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17] Length = 920 Score = 74.6 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 19/195 (9%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDE 73 R +++DTET L + + + + I A ++ A +V + D Sbjct: 345 RTNKILSLDTETTSTNAIEAELVGLSFAVEERKAFYVVIPANREEALKIVAIFKPLYEDP 404 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---IN 130 + K+ ++DI VL + P+F T IA L + +H + + LG ++ Sbjct: 405 EILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPEL-RHNMDYMAEVYLGYRTVH 463 Query: 131 ISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 I + Q + DLS + +YA D L+ KL G + L Sbjct: 464 IEELIGPRGRNQK---NMRDLSPTDIYEYACEDADITLRLKNVLEPKLDEAGVARLFRDI 520 Query: 183 CCNFLMDRAELDLLG 197 + A+++L G Sbjct: 521 EMPLVGVLADMELNG 535 >gi|224123698|ref|XP_002330186.1| predicted protein [Populus trichocarpa] gi|222871642|gb|EEF08773.1| predicted protein [Populus trichocarpa] Length = 552 Score = 74.6 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 37/180 (20%) Query: 18 RYVDAIAVDTETLGLMPRR------DRLCIVQLSPGDGTVDIIRIAAGQKNAPN-----L 66 + +D E P +++ I+Q++ D TV I + ++ P+ L Sbjct: 373 EGCKVVGLDCE---WKPNYVKGSKPNKVSIMQIAS-DKTVFIFDLIKLFEDIPDILDNCL 428 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVR-----------VRPVFCTKIASRLTRTYTN 115 +L + K+ + + DI L +++G ++ VF Sbjct: 429 SRILQSPRILKLGYNFQCDIKQLAHSYGELRCFNNYEKLLDIQNVF-----------KDA 477 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + GL +++LG ++K +++S+W L QL+YAA D L + F Q G Sbjct: 478 RGGLSGLAEKILGTGLNKTRRNSNWELRPLGHNQLEYAALDAAVLVHIFHHFHNHSQSAG 537 >gi|46249983|gb|AAH68411.1| Zgc:175195 protein [Danio rerio] Length = 504 Score = 74.6 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 24/172 (13%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94 + ++QLS G ++R+ A Q +L+ +L D++ K+ D L G Sbjct: 12 PPVSLLQLSSFTGRCVLVRLLAFQNAQLPKSLIVLLRDQRVLKVGVGCYEDGKRLAQDHG 71 Query: 95 VRVRPVFCT----KIASRLTRT--YTNQHGLKDNLKELLGINISKA--QQSSDWSADDLS 146 + + CT +A R ++ TN LK ++LL + + K+ + SDW A++LS Sbjct: 72 LTLS---CTVDLRYLALRRSKQAVLTNGLSLKSLAEDLLNVTLDKSVELRCSDWEAEELS 128 Query: 147 DEQLQYAASDVVHLHALRLQFTEK-----LQRLGRSDLA----TSCCNFLMD 189 EQ+ YAA D AL L G + ++CC L+D Sbjct: 129 PEQITYAARDAQISIALFFHLLGMNTERHLPAEG--EAVFLHLSACCQGLVD 178 >gi|255693419|ref|ZP_05417094.1| 3'-5' exonuclease domain protein [Bacteroides finegoldii DSM 17565] gi|260620806|gb|EEX43677.1| 3'-5' exonuclease domain protein [Bacteroides finegoldii DSM 17565] Length = 214 Score = 74.6 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 11/175 (6%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + I +D+E ++ ++Q+S + + R+ P LV Sbjct: 36 AVAYLQSRSVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTRP-LVD 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L + K+ + D +L + C ++ + + L+ L Sbjct: 92 LLENPDVIKVGLSLKDDFMMLHKRAPFNQQN--CIELQDYVRQFGIQDKSLQKIYAILFK 149 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ISK+Q+ S+W AD LSD Q QYAA+D + ++L++ G ++A Sbjct: 150 EKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGNYEIAPEE 203 >gi|307170679|gb|EFN62847.1| Exonuclease 3'-5' domain-like-containing protein 2 [Camponotus floridanus] Length = 622 Score = 74.6 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 9/153 (5%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + D E + P + ++QL+ +G V + R+ P L +L + K+ Sbjct: 109 GVLGFDCEWVKEGP----VSLLQLATYNGVVALFRLGKIGYVPPKLKELLATKHILKVGV 164 Query: 81 YGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINISK--AQQS 137 D + +G RV +A L ++ L E L I + K + Sbjct: 165 ASFEDGQKIVKDYGCRVSGTLDLRSLAENL--HLPSRKSLAAMSLEYLNIEMDKIIEVRC 222 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 DW A LSDEQ+ YAA D + + + +K Sbjct: 223 GDWDASTLSDEQVAYAACDALASVIIYHKIMQK 255 >gi|195114732|ref|XP_002001921.1| GI14516 [Drosophila mojavensis] gi|193912496|gb|EDW11363.1| GI14516 [Drosophila mojavensis] Length = 625 Score = 74.6 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 36/195 (18%) Query: 10 DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54 D+P EC + I +D+E + + +++LC++Q++ I Sbjct: 403 DLPDECLIIVDSFPIFNRMLKHLQREHIIYLDSEWMQNVCAQNQLCLLQIATTCNVYLID 462 Query: 55 ----RIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGV-----RVRPVFC-- 102 R A +++ L + + K+ D++VL + + Sbjct: 463 CLASRPALEEQHWRALGATVFNNPNILKVGFSMLNDLSVLQRSLPLQLRLHMPHHYLDLR 522 Query: 103 -------TKIASRLTRTYTNQHG--LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 + L N+ G L D LG ++K Q S+W+ L EQ+ YA Sbjct: 523 NVWLELKKRQGVELPFGNVNRAGDALTDLSMLCLGKKLNKTNQCSNWANRPLRREQILYA 582 Query: 154 ASDVVHLHALRLQFT 168 A D L + + Sbjct: 583 AIDARCLLLIYACLS 597 >gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] Length = 933 Score = 74.6 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 26/188 (13%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E D+ IAVDTET GL L + + +G + + AP Sbjct: 341 LTEADLARWLEKLNAAKLIAVDTETDGLDYMSANLVGISFALENGEAAYLPLHLDYLGAP 400 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L + KI +FD+ + G+ ++ + F T + S + Sbjct: 401 KTLEKNTALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEFDTMLLSYTLDS- 458 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164 T +H + D K LG D + L+ Q+ +YAA D L+ Sbjct: 459 TGRHNMDDLAKRYLGHQ---TISFEDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTMKLQ 515 Query: 165 LQFTEKLQ 172 EKL+ Sbjct: 516 QVLWEKLE 523 >gi|290975670|ref|XP_002670565.1| predicted protein [Naegleria gruberi] gi|284084125|gb|EFC37821.1| predicted protein [Naegleria gruberi] Length = 491 Score = 74.6 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 62/174 (35%), Gaps = 35/174 (20%) Query: 47 GDGTVDIIRIAAGQKNAPNLVG--MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT- 103 +G + I+ + + + ++ DE+ EK+FHY FD+ L + V CT Sbjct: 164 PNGKIVILDVLDMSDDLLDYFEDNIMFDERCEKVFHYKTFDLKFLG--GASYCKNVSCTH 221 Query: 104 KIASRLTRTYTNQHG---LKDN---------------------------LKELLGINISK 133 +I+S+ + L +KELL + K Sbjct: 222 EISSKYIPYHLLPISNYKLDTLSHYLTSRIISHINNVSQTSNDIGNLEEIKELLTYSNKK 281 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 Q SDW LS Q++YA DV+ L + L S S +L Sbjct: 282 ELQESDWFERPLSPTQVEYATQDVITLFGVHQLLINILVHQDNSFHLQSYFKYL 335 >gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] Length = 920 Score = 74.3 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76 + +++DTET R L + S + + + A ++ A + ++K Sbjct: 348 EFVSIDTETTSTDAIRAELVGLSFSVEENKAFYVPLPANREEALKYIRIFKPLYENDKIL 407 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 KI ++D VL +F T IA L + + H + + LLG I+I Sbjct: 408 KIGQNIKYDYKVLNNYGVTLQGEMFDTMIAHYLIQPELH-HNMDYMAETLLGYRTIHIEE 466 Query: 133 ------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q+ + DLS + +YAA D L+ +L+ LG +L + Sbjct: 467 LIGPKGKKQK----NMRDLSPTDICEYAAEDADITLRLKHLLEPRLKELGLEELFWNIEM 522 Query: 185 NFLMDRAELDLLG 197 + A+++L G Sbjct: 523 PLVRVLADMELNG 535 >gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] Length = 928 Score = 74.3 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 66/199 (33%), Gaps = 37/199 (18%) Query: 10 DIPAE----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA------- 58 D+ A A + DTET GL P R RL V L+ G I + Sbjct: 324 DLAALENWIALATGGGLVGFDTETTGLDPLRARLVGVSLAVAPGRACYIPVLHAPAQAQG 383 Query: 59 -----GQKNAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 +AP L +L D K+ H ++D+ V+ G+ V P T Sbjct: 384 DLLGGPSTDAPQIIPAAETLARLKPLLADPSVLKVGHNIKYDMQVMAMQ-GLAVEPFDDT 442 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGI-NI-------SKAQQSSDWSADDLSDEQLQYAAS 155 + S ++ HGL + LG NI S Q + + L YAA Sbjct: 443 MLLSYALDGASHGHGLDELCLLHLGHANIPFSEVCGSGRNQVT-FDRVPLDKA-RDYAAE 500 Query: 156 DVVHLHALRLQFTEKLQRL 174 D L +L Sbjct: 501 DADMTLRLHALLKPRLLSE 519 >gi|296004476|ref|XP_001350990.2| DNA binding protein, putative [Plasmodium falciparum 3D7] gi|224591370|emb|CAD49018.2| DNA binding protein, putative [Plasmodium falciparum 3D7] Length = 448 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 11/135 (8%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAV---LFYTFG 94 LC++QL D + I + P ++ +L +E+ K+ H DI +F + Sbjct: 140 LCLIQLCSSD-LCFVFNIHKLNGHIPISVKNILENEEIIKVAH----DIKNEKDMFLSNN 194 Query: 95 VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 ++++ VF + + + L+ +K L + K + S+W L EQ+ YAA Sbjct: 195 IQIKNVFD--LYNYAIDNFIYPPSLQSLVKIYLNKFLDKKFRLSNWLNYSLLQEQILYAA 252 Query: 155 SDVVHLHALRLQFTE 169 D + E Sbjct: 253 VDAYASRQIYFHLDE 267 >gi|327281940|ref|XP_003225703.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like [Anolis carolinensis] Length = 619 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 9/160 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIA----AGQKNAPNLVGMLV 71 Y + +D E + ++ + + ++QL+ G ++R+ GQ L+ +L Sbjct: 98 LEYCPVLGIDCEWVSADGKKAKPVSLLQLAVASGLCILLRLTHLTIDGQVLPKTLLHILG 157 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGI 129 K+ D L +GV V+ + + R Q+GL K +++L Sbjct: 158 SGSILKVGVGCWEDAYKLLRDYGVIVKGTVDLRYLAMRQRKALPQNGLSLKSLAEKILNY 217 Query: 130 NISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 ++ K+ + S+W ++L++EQ+ YAA D AL L Sbjct: 218 SLDKSFHLRCSNWEVEELAEEQITYAARDAQVSVALFLHL 257 >gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] Length = 926 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 20/189 (10%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHY 81 DTET R + + L G I + G++ L + D K+ Sbjct: 359 DTETDSKDALRANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRPLFADTAIGKVGQN 418 Query: 82 GRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG---------INI 131 ++DI VL G+ VR +F T IA L +H + + + LLG + Sbjct: 419 MKYDIQVLSRY-GIEVRGQLFDTMIAHYLL-FPDLRHNMDEMAETLLGYRTIHYSDLVGS 476 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDR 190 K + L YA D L + L G + L S + Sbjct: 477 DKQEVHI--RQVPL-QNLADYAMEDADITWQLYERLNAMLSEAGMTSLFESIEMPLVPVL 533 Query: 191 AELDLLGWE 199 +++ G + Sbjct: 534 VDMERSGVK 542 >gi|317475897|ref|ZP_07935153.1| 3'-5' exonuclease [Bacteroides eggerthii 1_2_48FAA] gi|316907930|gb|EFV29628.1| 3'-5' exonuclease [Bacteroides eggerthii 1_2_48FAA] Length = 210 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 21/180 (11%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + +D+E ++ ++Q+S + + R+ P ++ Sbjct: 36 AVAYLKKCPILGIDSETRPSFTKGQSH--KVALLQVSSEEHCF-LFRLNLTGLTLP-IIM 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L + K+ R D +L + A + Y G L+ Sbjct: 92 LLENPGITKVGLSLRDDFMMLHKRAPFE-------QRACVELQEYVRTFGIQDRSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 L G ISK+Q+ S+W A+ L+ Q QYAA+D + + E L+R G ++A Sbjct: 145 AILFGEKISKSQRLSNWEAEMLTPSQQQYAATDAWACLNIYNRLQE-LKRTGDFEMAIDE 203 >gi|159480884|ref|XP_001698512.1| hypothetical protein CHLREDRAFT_142979 [Chlamydomonas reinhardtii] gi|158282252|gb|EDP08005.1| predicted protein [Chlamydomonas reinhardtii] Length = 3780 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 60/178 (33%), Gaps = 33/178 (18%) Query: 22 AIAVDTETL-----GLMPRRDRLCIVQLSPGDGTVDIIRIAA------------------ 58 + +D E G+ R+ ++QLS D + Sbjct: 172 VVGLDAEWAPELKPGVRH---RISVIQLSTADCCWVLRPPPDRGGASAAVGGASGGAGSE 228 Query: 59 -GQKNAPNL----VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRT 112 P L V +L D + K + D+ L FGVRVR +A R+ Sbjct: 229 GAGNGHPALPAAVVRVLTDPRVVKAGVGIQEDVKRLERDFGVRVRGAVDVRLVAQRVAPD 288 Query: 113 YTNQHG-LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 G L+ LLG + K Q SDW A L Q+ YAA D L L+ Sbjct: 289 CLAAGGSLQALTGSLLGRRLDKGPQRSDWGAGRLDQRQVVYAAHDAWLSRELLLELHR 346 >gi|242022456|ref|XP_002431656.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516964|gb|EEB18918.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 734 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 26/181 (14%) Query: 18 RYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----- 68 V + +D E GL + L + Q++ + IA NL Sbjct: 374 DGVKVVGLDAEWKPCF-GLK--KSELALFQIATRHVVYLLDIIALSSVVPENLWIRFSEI 430 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTF----GVRV--RPVFCTKIASRLT--RTYTNQHG-- 118 + + K+ + D ++ G+ + + +I R+ +T H Sbjct: 431 LFGNPNILKLGFGLQGDFTIIQEKLLGLHGIIIPETSLLDLEILWRVLQNNNFTFPHAAS 490 Query: 119 ----LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L ++ LG + K+ Q SDW L Q+ YAA D L ++ + Sbjct: 491 VSSTLNSFIEFCLGEKLDKSNQFSDWEKRPLRHSQIVYAALDAYCLLEAYDVILKESKNQ 550 Query: 175 G 175 Sbjct: 551 N 551 >gi|218129756|ref|ZP_03458560.1| hypothetical protein BACEGG_01335 [Bacteroides eggerthii DSM 20697] gi|217987866|gb|EEC54191.1| hypothetical protein BACEGG_01335 [Bacteroides eggerthii DSM 20697] Length = 210 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 21/180 (11%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + +D+E ++ ++Q+S + + R+ P ++ Sbjct: 36 AVAYLKKCPILGIDSETRPSFTKGQSH--KVALLQVSSEEHCF-LFRLNLTGLTLP-IIM 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L + K+ R D +L + A + Y G L+ Sbjct: 92 LLENPGITKVGLSLRDDFMMLHKRAPFE-------QRACVELQEYVRTFGIQDRSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 L G ISK+Q+ S+W A+ L+ Q QYAA+D + + E L+R G ++A Sbjct: 145 AILFGEKISKSQRLSNWEAEMLTPSQQQYAATDAWACLNIYNRLQE-LKRTGDFEMAIDE 203 >gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] Length = 930 Score = 74.3 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 65/196 (33%), Gaps = 24/196 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R + A D+ET L PR+ L + + + + ++ +A L + D Sbjct: 358 LREAGSFAFDSETTALNPRQAELVGLSFATKAHSGWWVPASSEALDA--LRPLFADNSIT 415 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI------- 129 KI H +FD+A+L P + T +A L +H L ++ L Sbjct: 416 KIGHNLKFDLAILAAQSCPVDGPCYDTMLAHALIEPE-QRHNLDTLAEDYLRYSTIRFSE 474 Query: 130 ---NISKA----QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + K S D YA D L F KL+ G++ + Sbjct: 475 LMPDAKKGSPLDYSSVD------PQALADYATEDADVTLQLWECFKPKLEESGQASIFYE 528 Query: 183 -CCNFLMDRAELDLLG 197 L ++ G Sbjct: 529 IETPLLPVLVAMESEG 544 >gi|193290152|ref|NP_001123262.1| exonuclease 3'-5' domain-like 2 [Nasonia vitripennis] Length = 605 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 22/168 (13%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + D E + P + ++QL+ +G + R++ P L +L K+ Sbjct: 85 GVLGFDCEWVNEEP----VSLLQLATHNGVCALFRLSKIGHIPPKLKELLSSRDLLKVG- 139 Query: 81 YGRFDI-AVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL------KDNLKELLGINISK 133 FD + + +V R ++H L + L + K Sbjct: 140 VASFDDGRKIAKDYNCQVVGTVD-------LRMLAHRHSLPSPKSLAALCVQYLDTEMDK 192 Query: 134 --AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + S+W+AD L++EQ+ YAA D + Q +K+ + RS Sbjct: 193 ILEVRCSNWNADSLTNEQISYAAHDAYAAVLIYHQILQKIVQK-RSIW 239 >gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1] gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1] Length = 910 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 71/227 (31%), Gaps = 35/227 (15%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS--------------PGDGT 50 +P C R + +DTET L R L + L T Sbjct: 298 TTTEQLPTVCEELRAAGGLVIDTETTSLNALRAELVGISLCPLPAAATAADNSQPTPPPT 357 Query: 51 VDIIRIAAGQKNAPN-------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 + I + L +L D + K+ H ++D+ VL Sbjct: 358 AWYLPIGHRLADGSPAPGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDLQVLKSHGLELA 417 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD------LSDEQLQ 151 P+ + IAS L H L D ELL ++ + S + Sbjct: 418 APLADSMIASYLIDPGRRSHKLDDLSSELLERQLTSFAEVSAGDRRPEAFAYVEPAAACR 477 Query: 152 YAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 Y+ DVV L F +LQ+LG L L A ++ LG Sbjct: 478 YSCQDVVASRLLWELFAPQLQQLGLDSLLHEVEMALLPILARMERLG 524 >gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] Length = 994 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 70/203 (34%), Gaps = 41/203 (20%) Query: 9 GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------- 56 D+ A A A + DTET L LC V L+ G + + Sbjct: 384 ADLDAFIARATEAGVVGFDTETDALSATHAGLCGVSLAIGPNDACYVPLTHEHPPVEGAG 443 Query: 57 ------------AAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 Q + P L G+L D K+ G++D+AV+ G+RV P+ Sbjct: 444 GLDFGGDTDARPPLDQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMARR-GIRVAPI 502 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ 151 T + S + + HG+ + + LG KAQ+S + +L Sbjct: 503 DDTMLISYVLEGGLHGHGMDELSRLHLGHEPIPFKSVAGTGKAQKS--FKHVELKPATC- 559 Query: 152 YAASDVVHLHALRLQFTEKLQRL 174 YAA D L +L Sbjct: 560 YAAEDADVTLRLWRILKPRLATE 582 >gi|299472524|emb|CBN77309.1| conserved unknown protein [Ectocarpus siliculosus] Length = 648 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 34/178 (19%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP---------NLVGMLVDE 73 + +D E P +R ++Q++ IA + A + +L D Sbjct: 449 VGLDVE---NSPTTNRATLLQVATSTDVFLFDLIALLGRAASLEVSRQFDATVEDLLTDP 505 Query: 74 KREKI-FHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRTYTNQ-------HGLKD 121 K+ F + D L TF G R +IA+ L + L Sbjct: 506 HIVKLGFSFA-HDATALRKTFPSARGFR-------RIAALLEVGELSSAVLGRSTPSLSK 557 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + LG + K + +S W L+ +Q++YAA D L + + L+R GR Sbjct: 558 TCEAWLGKPLDKTECASKWDVRPLTADQVRYAALDAHCLVGIFEEML--LERGGRLAA 613 >gi|111226700|ref|XP_642107.2| 3'-5' exonuclease domain-containing protein [Dictyostelium discoideum AX4] gi|90970724|gb|EAL68469.2| 3'-5' exonuclease domain-containing protein [Dictyostelium discoideum AX4] Length = 686 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 7/138 (5%) Query: 33 MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT 92 ++ ++QLS + T I +++ +K +L +L D + K+ D A +F T Sbjct: 188 THYNHKVALIQLSSKNETFLI-QVSQMEKIPISLEQILTDPRLIKVGVAVSQDAATIFQT 246 Query: 93 FGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQ 149 F V + IA RLT N GL ++ + ++K+ + W LS++Q Sbjct: 247 FSVVTKGYVDLVPIA-RLTNYEGN--GLASLALNVMNVTLNKSNKIRCGHWENKKLSNDQ 303 Query: 150 LQYAASDVVHLHALRLQF 167 + YAA+D + Sbjct: 304 IHYAAADAWVGREIFEIM 321 >gi|319901369|ref|YP_004161097.1| 3'-5' exonuclease [Bacteroides helcogenes P 36-108] gi|319416400|gb|ADV43511.1| 3'-5' exonuclease [Bacteroides helcogenes P 36-108] Length = 220 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 21/180 (11%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + +D+E ++ ++Q+S + + R+ P + Sbjct: 36 AVAYLKSCTLLGIDSETRPSFTKGQSH--KVALLQVSSEEHCF-LFRLNLTGLTLPVIT- 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L + K+ R D +L + A + Y G L+ Sbjct: 92 LLENPNVTKVGLSLRDDFMMLHKRAPFE-------QHACIELQEYVRAFGIQDKSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 L G ISK+Q+ S+W AD LS+ Q QYAA+D + + E L+R G ++A Sbjct: 145 GILFGEKISKSQRLSNWEADMLSESQKQYAATDAWACLNIYNRLQE-LKRTGDFEIAPEE 203 >gi|195111972|ref|XP_002000550.1| GI22458 [Drosophila mojavensis] gi|193917144|gb|EDW16011.1| GI22458 [Drosophila mojavensis] Length = 595 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 8/171 (4%) Query: 21 DAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + D E T+G RR + ++QLS G + R+ ++ +L +L D+ K+ Sbjct: 73 KVMGFDCEWITVGG-TRRP-VALLQLSSHKGLCALFRLCCMKQIPKDLRELLEDDAVLKV 130 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ-- 136 + D L + +GV V F + + + GL + L + K + Sbjct: 131 GVAPQDDAMKLSHDYGVGVASTFDLRYMAVMAGHQAE--GLGKLSQTHLNTALDKNWRLA 188 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S+W A L QL YAA+D + A+ + ++ L+ D L Sbjct: 189 CSNWEAPQLDSAQLNYAANDALAAVAIFQKLSKDLEPRTFWDWRAPKFKQL 239 >gi|332195255|gb|AEE33376.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] Length = 589 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 37/176 (21%) Query: 13 AECAARYVDAIAVDTETLGLMPRR------DRLCIVQLSPGDGTVDIIRIAAGQKNAPN- 65 A + +D E P +++ I+Q+ D + I+ + +A Sbjct: 371 ATSFLEGCRVVGIDCE---WKPNYIKGSKQNKVSIMQIGS-DTKIFILDLIKLYNDASEI 426 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFG-----------VRVRPVFCTKIASRLT 110 L +L + K+ + + DI L ++G + ++ VF Sbjct: 427 LDNCLSHILQSKSTLKLGYNFQCDIKQLALSYGDLKCFERYDMLLDIQNVF--------- 477 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 GL K++LG++++K +++SDW LS QL+YAA D L + Sbjct: 478 --NEPFGGLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHIFRH 531 >gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] Length = 956 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREK 77 ++ DTET GL P L + S G + + ++ A L +E +K Sbjct: 385 SVCFDTETTGLNPLTAELVGIAFSWDAGKGFYLPFSDNKEEAQQLIEELRPFFENEDIQK 444 Query: 78 IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 + ++DI VL + + + VR P+F T +A L +H + + L ++I Sbjct: 445 VGQNLKYDIKVL-HKYDIEVRGPLFDTMLAHYLINP-DMRHNMDVLAETYLNYSPVSIET 502 Query: 133 ------KAQQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 K Q+ S L ++Q +YA D L+ F ++L L Sbjct: 503 LIGKKGKNQK----SMRDVPL-EDQTEYAVEDADITLQLKEHFEKELGDANTQKLFDDIE 557 Query: 184 CNFLMDRAELDLLG 197 L A ++L G Sbjct: 558 IPLLRVLAAMELEG 571 >gi|301754868|ref|XP_002913303.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Ailuropoda melanoleuca] Length = 596 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 25/155 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 199 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLKMVLEDKRILKVIHDCRWLSD--CLSHQYG 256 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGINISKAQQS---------- 137 + + VF T++A S T + L+++L L + K Sbjct: 257 ILLNNVFDTQVADVLQFSMETGGFLPNCISSLQESLIRHLKVA-PKYLSFLEERQKLIQE 315 Query: 138 --SDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 W LS L+ A + +L LRL ++ Sbjct: 316 NPEVWFTRPLSPSLLKILALEATYLRPLRLVLLDE 350 >gi|195352042|ref|XP_002042524.1| GM23271 [Drosophila sechellia] gi|194124393|gb|EDW46436.1| GM23271 [Drosophila sechellia] Length = 625 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 54/206 (26%) Query: 10 DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54 D+P EC + I +D+E + + ++LC++Q++ D V +I Sbjct: 404 DLPDECLIIVDKADQFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCVLQIAT-DHNVYLI 462 Query: 55 RIAAGQKNAPNLVGML-----VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 A + +L + K+ D++VL + P+ ++ ++ Sbjct: 463 DCLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSL-----PL---QLRLQM 514 Query: 110 TRTYTN-----------QHG--------------LKDNLKELLGINISKAQQSSDWSADD 144 Y + + G L D LG ++K+ Q S+W+ Sbjct: 515 PHHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRP 574 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEK 170 L EQ+ YAA D L + + Sbjct: 575 LRREQILYAAIDARCLLLIYNTLIAR 600 >gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] Length = 924 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 65/215 (30%), Gaps = 47/215 (21%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-------------- 62 AR AVDTET GL P L + L+P G I + Sbjct: 338 ARTSGVCAVDTETDGLDPLTAPLVGISLAPQCGRACYIPLGHQVDLMDSLGTPQMPVGTA 397 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L + D K+F +FD+ VL V+ P+ T + + Sbjct: 398 LEILEPLFADPSVLKVFQNAKFDLLVLTQAGSVQPAPIDDTML-----------ISYAQS 446 Query: 123 LKELLGINISKAQQSS-DWSADDLSD-----------EQLQ------YAASDVVHLHALR 164 + G + + + + D S + Q+ YAA D L Sbjct: 447 AGQH-GQGMDELSRLTLDHSPIPYDEVTGTGRNRVVFSQVDIARATPYAAEDADVTLRLW 505 Query: 165 LQFTEKLQRLGRSDLATSCCN--FLMDRAELDLLG 197 +L R R+ + A+++ G Sbjct: 506 QVLRPRL-RTSRALALYEEMERPLIPILADMERAG 539 >gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] Length = 920 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKRE 76 +++DTET L + S + + I A ++ A + +E+ Sbjct: 348 GFVSLDTETTSTDAISAELVGLSFSVEENRAFYVAIPADRQEATRIVGIFKPLYENEQIL 407 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 KI ++D VL + +F T IA L + + H + + LLG I+I Sbjct: 408 KIGQNIKYDYEVLSHYGVTLQGKMFDTMIAHYLIQPELH-HNMDYMAETLLGYRTIHIEE 466 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q+ + DLS + +YAA D L+ L+ LG +L + Sbjct: 467 LLGPKGKKQR----NMRDLSPTDIYEYAAEDADITLRLKHVLEPHLKELGLEELFWNIEM 522 Query: 185 NFLMDRAELDLLG 197 + A+++L G Sbjct: 523 PLVRVLADMELNG 535 >gi|331212705|ref|XP_003307622.1| hypothetical protein PGTG_00572 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309298025|gb|EFP74616.1| hypothetical protein PGTG_00572 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1227 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 32/180 (17%) Query: 14 ECAARYVDAIAVDTETL--GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN------APN 65 E A+A D E + +R ++QL V I++I++ Sbjct: 592 ELEGGPYVAVAFDMEWTISRVRGHENRTAVIQLGS-RSQVLIVQISSDVAWRAQGIMPSC 650 Query: 66 LVGMLVDEKREKIFHYGRFD-IAVLF-YTFGVRVR-PVFCTKIASRLTR---------TY 113 L+ LV+ + KI R D + ++ + G + F SRL R Y Sbjct: 651 LIDFLVNPQIVKIGVGIRNDGLKLIRDHKLGQKPFLNSF--LELSRLVRALGQPDCASGY 708 Query: 114 TNQHGLKDNLKELLGINISK-AQQSSDWSADDLSDEQLQYAASDVV-------HLHALRL 165 + L+ + + L + + K ++SDW A L+ Q+ YAASDV+ HL L Sbjct: 709 SRLISLQQIVADHLKVYLPKIDTRTSDW-AKPLTATQIDYAASDVIATVRVTMHLFKLFE 767 >gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] Length = 921 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 22/208 (10%) Query: 7 HEGDIPAECAARYVDAI-AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 ++ D+ C + I ++DTET L + + + + + A ++ A Sbjct: 334 NQEDLKKLCDYFLTNKILSLDTETTSTSAIDAELVGLSFAVKEFEAFYVPVPANREEALQ 393 Query: 66 LVGML----VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 +V + + + K+ ++D+ VL ++ T IA L + + H + Sbjct: 394 IVNIFKPAYENPEILKVGQNLKYDLEVLRNYGIELKGKMWDTMIAHYLIQPELH-HNMDY 452 Query: 122 NLKELLG---INIS-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170 + L I+I K Q+ S L Q+ +YAA D L+ + + Sbjct: 453 MAEIYLNYQTIHIEELIGPKGKNQK----SMRSLPPSQVYEYAAEDADITLRLKNKLEPE 508 Query: 171 LQRLGRSDL-ATSCCNFLMDRAELDLLG 197 L++ DL + AE++L G Sbjct: 509 LKKAECEDLFYNIEMPLMPVLAEMELNG 536 >gi|224051280|ref|XP_002200511.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 1 [Taeniopygia guttata] Length = 621 Score = 73.9 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 69/155 (44%), Gaps = 8/155 (5%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVDEKRE 76 + +D E + + + + + ++Q++ G ++R+ A+GQ L+ ++ D Sbjct: 105 PVLGIDCEWVSVEGKANPVSLLQMASSSGLCILVRLPRLVASGQTLPKTLLDIMADSAVL 164 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGINISKA 134 K+ D L + +G+ V+ + + R N LK +++L + K+ Sbjct: 165 KVGVGCWEDACKLLHDYGLAVKGSMDLRYLAMRQRKDLLHNCLSLKSLAEKVLNFPLDKS 224 Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + S+W A++L+ +Q+ YAA D A+ Sbjct: 225 PHVRCSNWEAEELTQDQVLYAARDAQVSVAVFFHL 259 >gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] Length = 890 Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 66/203 (32%), Gaps = 29/203 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDII--RIAAGQKNAPN---- 65 A+ +A+DTET L P R L C +SPG + A + AP Sbjct: 310 AKAAGQLAIDTETTSLDPIRADLVGFSLC---VSPGLAYYAPLAHDWPADEPQAPRRQAL 366 Query: 66 --LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L L D KI ++D+ VL P+F T +A L HGL+ Sbjct: 367 DLLGQALADPGLLKIGQNLKYDLNVLRRAGLSVAGPLFDTMVADYLLNPAKASHGLEAIA 426 Query: 124 KELLGINI--------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 E LG + K + + + + YAA D KL Sbjct: 427 AEHLGRGVIGFEEAVGGKGKGFA---QAP-PERAVPYAAEDADVALQAAQALGPKLDEAD 482 Query: 176 RSDLATS-CCNFLMDRAELDLLG 197 L A+++ G Sbjct: 483 LRRLFDELEMPLTPLLAKMERYG 505 >gi|225450638|ref|XP_002278277.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296089752|emb|CBI39571.3| unnamed protein product [Vitis vinifera] Length = 586 Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 69/176 (39%), Gaps = 37/176 (21%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDR------LCIVQLSPGDGTVDIIRIAAGQKNAPN- 65 A C + +D E P ++ + I+Q++ + I + + P+ Sbjct: 368 ASCYIEGCKVLGIDCE---WKPNYEKGSKPNKVSILQVAS-EKRAFIFDLIKLATDVPDV 423 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-----------VRPVFCTKIASRLT 110 L+ +L + K+ + + D+ L ++G ++ +F Sbjct: 424 LDNCLISILHSSRILKLGYNFQCDVNQLTQSYGELKCFKHFEMLLDIQNMF--------- 474 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 + GL K++LG ++K +++S+W LS QL+YAA D L + + Sbjct: 475 --KEPRGGLSGLAKKVLGAGLNKTRRNSNWEQRPLSQHQLEYAALDAAVLVHIFSK 528 >gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87] gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87] Length = 941 Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 66/195 (33%), Gaps = 21/195 (10%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEK 74 ++ DTET L P +L + S G + + L+ +L + Sbjct: 366 KQKSVCFDTETTSLNPLEAQLVGIAFSWEGGKGYYLPFEDNIEKTQQLIELLRPFFESPE 425 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130 EKI ++DI VL P F T IA L +H + + L Sbjct: 426 IEKIGQNLKYDIKVLDKYGIKVEGPTFDTMIAHYLINP-DMRHNMDILAETYLNYTPQPI 484 Query: 131 ---ISK--AQQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 I K Q S L EQ +YAA D L+ F ++L L Sbjct: 485 SELIGKKGKNQKS---MRDVPL-AEQTEYAAEDADITFQLKEFFEKELDEAKTRKLFNEI 540 Query: 183 CCNFLMDRAELDLLG 197 + A++++ G Sbjct: 541 EMPLVEVLADMEIEG 555 >gi|242053889|ref|XP_002456090.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor] gi|241928065|gb|EES01210.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor] Length = 239 Score = 73.5 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 10/167 (5%) Query: 23 IAVDTE---TLGLMP-RRD-RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + +DTE + RD R+ ++QL G + + L L + Sbjct: 59 VGLDTEWRVVVSHDDGYRDNRMAVLQLCVG-HRCLVFQTVHADYVPAALRAFLANPDHRF 117 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLT-RTYTNQHGLKDNLKELLGINISK-- 133 + D+ L+ + V +A+ + R + GLK ++E++G+ + K Sbjct: 118 VGVSVDGDVERLYCDCKILVATPVDLRHVAAEVLSRPELRRAGLKALVREVMGVVMEKPK 177 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 S WS LS EQ++YAA D + + + L D A Sbjct: 178 HVTMSRWSRRPLSPEQVRYAAIDAFVSYEVGRLLLTSQRALELEDAA 224 >gi|304383100|ref|ZP_07365575.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304335786|gb|EFM02041.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 218 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 11/155 (7%) Query: 23 IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +DTE ++ ++Q+S D T + R+ ++ L D KI Sbjct: 48 LGIDTETRPAFKKGQTH--KVSLLQVSTND-TCFLFRLNMIG-LTSSIKYFLEDSTVPKI 103 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 D+ L + + GL + G ISK +Q + Sbjct: 104 GLSLGDDVMALQKRGSFIPGNFIDLQ--DHVKEIGIQDLGLAKLYANIFGQRISKREQLT 161 Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +W AD L+++Q +YAA+D L +F +L++ Sbjct: 162 NWDADVLTEKQKRYAATDAWACIKLYEEFN-RLKK 195 >gi|294883486|ref|XP_002770958.1| hypothetical protein Pmar_PMAR007114 [Perkinsus marinus ATCC 50983] gi|239874096|gb|EER02774.1| hypothetical protein Pmar_PMAR007114 [Perkinsus marinus ATCC 50983] Length = 469 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 36/172 (20%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAP--------NLVGMLVDEKREKIFHYGRFDIAV 88 +LC+ S +V ++ I +A +L ++ D + EK+F+ R D+ Sbjct: 295 AQLCL---SSDPRSVYVVDITRLGFHASHATTHTGTSLKSIMEDSRIEKVFYDPRNDVDA 351 Query: 89 LFYTFGVRVRPVFCTKIAS---RLTRTYTNQ--HGL-KDNLKELLGI------------N 130 L+Y F V + VF ++A R R T + GL K ++ + + + Sbjct: 352 LYYQFNVAPQNVFDLQLAEVALRRARGLTVRYVIGLFKCLVQSEVFVQPGLREFAMWIND 411 Query: 131 ISK-------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 I K ++ L + YA+ DV +L L FT++L+ G Sbjct: 412 IGKALFEPKHGGSYKVFTERPLHPGIIVYASHDVRYLLPLYDAFTKQLKCAG 463 >gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] Length = 940 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 18/178 (10%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEK 74 ++ DTET L L + S G + + + + Sbjct: 365 QQKSVCFDTETTSLNALEAELVGIAFSWNKGKGYYLALPEDKTEVLEILDPFKAFFEHPE 424 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130 EKI H ++D+ VL P+F T IA L +H + + L + Sbjct: 425 IEKIGHNLKYDLKVLRNYDIHVKAPLFDTMIAHYLINP-DMRHNMDILAETYLNYSAQSI 483 Query: 131 ---ISK--AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 I K Q + ++S ++Q +YA D L+ F E++ +L Sbjct: 484 TELIGKKGKNQGT---MREVSLEQQTEYAVEDADITLQLKEYFHEEMSTAKTLELYQK 538 >gi|84995770|ref|XP_952607.1| DNA binding protein [Theileria annulata strain Ankara] gi|65302768|emb|CAI74875.1| DNA binding protein, putative [Theileria annulata] Length = 247 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 7/134 (5%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 R + IVQ+ GD T I I PN GM + ++ H D+ +LF +G Sbjct: 102 RCKPSIVQIC-GDSTCFIYLIYKIGY-IPN-KGMFITSFILQVSHGAPSDMRLLFKHYGT 158 Query: 96 RVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 + L + Y LK+ + +L + ++K QQ S+W AD L +Q+ YA+ Sbjct: 159 KCTNFVD---LKDLCKDYNIYPASLKNATESVLNLKLNKKQQCSNWEADKLVPDQISYAS 215 Query: 155 SDVVHLHALRLQFT 168 +D + ++ Sbjct: 216 TDAWVTREIFIKLN 229 >gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601] gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601] Length = 935 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 72/225 (32%), Gaps = 36/225 (16%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN- 62 ++ E P AA +AVDTET GL L + L G I +A + Sbjct: 331 VKTAEDLAPFIDAAHQRGWVAVDTETTGLNEMACDLVGISLCTEPGEACYIPLAHRADSD 390 Query: 63 -------------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 L +L D KI ++D + GVR+ P+ T Sbjct: 391 GGLFGDGDLAEGQMPMQAALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GVRIAPIDDT 449 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYA 153 + S + HG+ + L K + + D ++YA Sbjct: 450 MLMSYAMNAGLHGHGMDALSERYLSHTPIPIKELLGSGKKMKTF---DQVPIEDA-VKYA 505 Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 A D L +L R + + + + AE+++ G Sbjct: 506 AEDADITLRLWTLLKPQLHRNHVTRVYETMERPLVPVLAEMEMAG 550 >gi|78357431|ref|YP_388880.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219836|gb|ABB39185.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 201 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 65/172 (37%), Gaps = 11/172 (6%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIA 57 T+ E ++ A A + I DTET R + ++Q + D I Sbjct: 30 TLVRTEDELEAALRALHSEELIGFDTET--RPTFRKGKMNLPSLIQFAARDMVYLI--HL 85 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + + +L K R DI L V +R T H Sbjct: 86 GWVAFSEGIQDVLSSPHIVKTGVAVRDDIKDLKKLACFEDAAVVDLGEVARELGMET--H 143 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 GL++ LL ISKA Q S+WS +LS +Q+ YAA+D + L+ E Sbjct: 144 GLRNLAANLLEFRISKAAQCSNWSNLELSRQQISYAATDAWVSREIHLRMRE 195 >gi|332827669|gb|EGK00408.1| hypothetical protein HMPREF9455_03256 [Dysgonomonas gadei ATCC BAA-286] Length = 181 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 22/179 (12%) Query: 4 IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVD 52 I V + + AE AA Y+ AI DTET R ++ ++QLS D Sbjct: 8 IIVVQSESEAEKAAAYLKKQTAIGFDTET------RPAFRKGVSHQIALMQLSTDDTCFL 61 Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTR 111 G + L +LV+ +KI + D + + ++ S + Sbjct: 62 FRLNIIGLPDC--LAEILVNPAIKKIGLSLKDDFSAIHKRNAAFVPSNFI--ELQSFVKN 117 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +GL+ L ISK Q+ S+W AD LSD Q YAA D + + + Sbjct: 118 YGIEDNGLQRIYGILFEKRISKGQRLSNWEADVLSDAQKMYAAIDAWACLKIYNELKVR 176 >gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 933 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 18/190 (9%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +TI H+ + AVDTET L +L + + G + +A Sbjct: 335 STILTHDELDEWIDKLSKAELFAVDTETTSLNYMEAKLVGLSFAVEAGKAAYLPLAHDYL 394 Query: 62 NAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP L +L + + +K+ ++D+++L G++++ + F T + S + Sbjct: 395 DAPQQLNQAEALAKLKPLLENPEIKKVGQNLKYDMSILAN-VGIKLQGIAFDTMLESYVF 453 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALR 164 + ++H + D + LG ++ + A L+ Q+ YAA D L Sbjct: 454 NSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQLTFNQISLEVAAPYAAEDADITLRLH 513 Query: 165 LQFTEKLQRL 174 +LQ+ Sbjct: 514 QHLWPRLQKE 523 >gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.] Length = 912 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 21/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A+DTET P + +L + +S I +A + P L Sbjct: 330 LESANHFALDTETTSENPLKAKLVGISVSLKANEAFYIPLAHKYEGVPKQLDMNETLNML 389 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 G+ + +KI ++D VL G+ + V+ T IAS L H L + Sbjct: 390 KGVFENPDIKKIGQNIKYDWIVLKRH-GIDIAGVYSDTMIASYLINPSKRAHNLDQIALD 448 Query: 126 LLGI-------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 LG + K + S +S L + YA D KL +G D Sbjct: 449 FLGHKKITFEETVGKKKPESGFSNVPLEKA-VSYACEDADITLMAHDVLFPKLLEIGLKD 507 Query: 179 LATS-CCNFLMDRAELDLLG 197 L + + ++++ G Sbjct: 508 LFENIEMPLIPVLMKMEIKG 527 >gi|255542852|ref|XP_002512489.1| 3-5 exonuclease, putative [Ricinus communis] gi|223548450|gb|EEF49941.1| 3-5 exonuclease, putative [Ricinus communis] Length = 570 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 25/167 (14%) Query: 18 RYVDAIAVDTETLGLMPRRDR------LCIVQLSPGDGTVDIIRIAAGQKNAPN-----L 66 + +D E P ++ + I+Q++ D V I + ++ P+ L Sbjct: 369 EGCKVVGLDCE---WKPNFEKGSKPNKVSIMQIAS-DKMVFIFDLIKLFEDVPDTLDNCL 424 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKD 121 +L + K+ + + D L ++G + + + R + GL Sbjct: 425 TRILQSPRILKLGYNFQCDTKQLAQSYGELKCFKHYEMLLDIQ---NVCRE--PRGGLSG 479 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 K+LLG ++K +++S+W LS QL+YAA D V L + Sbjct: 480 LAKKLLGAGLNKTRRNSNWEQRPLSQHQLEYAALDAVVLIHIFHHIR 526 >gi|260171573|ref|ZP_05757985.1| hypothetical protein BacD2_06865 [Bacteroides sp. D2] gi|315919887|ref|ZP_07916127.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693762|gb|EFS30597.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 219 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 21/175 (12%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + I +D+E ++ ++Q+S + + R+ P LV Sbjct: 36 AVAYLQSRPVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVD 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L + K+ + D +L P T+ + + Y Q G L+ Sbjct: 92 LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L ISK+Q+ S+W AD LSD Q QYAA+D + ++L++ G + Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGDWE 198 >gi|114046520|ref|YP_737070.1| 3'-5' exonuclease [Shewanella sp. MR-7] gi|113887962|gb|ABI42013.1| 3'-5' exonuclease [Shewanella sp. MR-7] Length = 303 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 12/159 (7%) Query: 21 DAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + DTET +R L +VQL+ D T + + A + L +L +E+ Sbjct: 121 SVLGFDTET---RASFERGVQHPLSLVQLATSD-TCYLFQRAVLGERLAELKPLLENEQI 176 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-- 133 K+ R D L + ++V P A + G + + LL I K Sbjct: 177 LKVGIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGA-GKEMGTRQLVAALLHKRIDKPK 235 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 S+W LS Q+QYA D + + Q +KLQ Sbjct: 236 KITLSNWQQVPLSQAQIQYAVLDALAANLCFWQLIDKLQ 274 >gi|160887119|ref|ZP_02068122.1| hypothetical protein BACOVA_05135 [Bacteroides ovatus ATCC 8483] gi|293370879|ref|ZP_06617424.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f] gi|299148614|ref|ZP_07041676.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23] gi|156107530|gb|EDO09275.1| hypothetical protein BACOVA_05135 [Bacteroides ovatus ATCC 8483] gi|292634095|gb|EFF52639.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f] gi|298513375|gb|EFI37262.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23] Length = 219 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 21/175 (12%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + I +D+E ++ ++Q+S + + R+ P LV Sbjct: 36 AVAYLQSRPVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVD 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L + K+ + D +L P T+ + + Y Q G L+ Sbjct: 92 LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L ISK+Q+ S+W AD LSD Q QYAA+D + ++L++ G + Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGDWE 198 >gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108] gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108] Length = 952 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 21/194 (10%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 + +++DTET G P L + S + + + ++ A L + +EK Sbjct: 379 SEILSIDTETTGTEPMEAELVGMSFSDAENQAYYVPVPPIREEALKIVNELRPLYENEKS 438 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132 K+ ++D+ VL P+F T +A + + +H + + L I+I Sbjct: 439 LKVGQNIKYDMIVLQNYEIQVKGPLFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHID 497 Query: 133 -------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 K Q+ + DLS E++ +YA D L+ ++L+ G L Sbjct: 498 ELIGPRGKNQK----NMRDLSPEEVYRYACEDADVTLKLKNILEKELKEQGGEHLFHEIE 553 Query: 184 CNFLMDRAELDLLG 197 + ++ G Sbjct: 554 MPLVPVLVNIESNG 567 >gi|297848138|ref|XP_002891950.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337792|gb|EFH68209.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 569 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 37/176 (21%) Query: 13 AECAARYVDAIAVDTETLGLMPRR------DRLCIVQLSPGDGTVDIIRIAAGQKNAPN- 65 A + +D E P +++ I+Q+ D + I+ + +A Sbjct: 372 ATSFLEGCRVVGIDCE---WKPNYIKGSKQNKVSIMQIGS-DTKIFILDLIKLYNDATEM 427 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFG-----------VRVRPVFCTKIASRLT 110 L +L + K+ + + D+ L ++G + ++ VF Sbjct: 428 LDNCLSQILQSKSTLKLGYNFQCDVKQLALSYGDLKCFERYDMLLDIQNVF--------- 478 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 GL K++LG++++K +++SDW L+ QL+YAA D L + Sbjct: 479 --KEPFGGLAGLTKKILGVSLNKTRRNSDWEQRPLTQNQLEYAALDAAVLIHIFRH 532 >gi|71908088|ref|YP_285675.1| 3'-5' exonuclease [Dechloromonas aromatica RCB] gi|71847709|gb|AAZ47205.1| 3'-5' exonuclease [Dechloromonas aromatica RCB] Length = 217 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 18/156 (11%) Query: 21 DAIAVDTET--------LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 I DTE+ + P +VQL+ D V ++ +A N L +L Sbjct: 47 PVIGFDTESKPTFLKGEVSTGPH-----LVQLAT-DEHVFLLPVAFAA-NHEVLRRILSA 99 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI- 131 K+ D +VL G+ + V A R + G K + G Sbjct: 100 ADILKVGLGLGNDRSVLRSRLGIELNNVLDLGEAMR-GPGHRGTVGAKVAVAHYFGQKFQ 158 Query: 132 -SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 SK +S+W+ L++ QL YAA+D L Sbjct: 159 KSKKVGTSNWANPRLNERQLLYAANDAHVALQLYHA 194 >gi|296221953|ref|XP_002756974.1| PREDICTED: werner syndrome ATP-dependent helicase [Callithrix jacchus] Length = 1433 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 21/161 (13%) Query: 26 DTETLGLMPRRD---------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 D E +G ++ ++QL + + I++ L +L ++ + Sbjct: 75 DGEMVGFDMEWPPVYNKGKLGKVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAIK 134 Query: 77 KIFHYGRFDIAV----LFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131 K I L F V++ T +A++ + L +K LLG + Sbjct: 135 K----AGVGIEGDQWKLLRDFDVKLENFVELTDVANKKLKC-KETWSLNGLVKHLLGKQL 189 Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K+ + S+WS L+++Q YAA+D + + Sbjct: 190 LKDKSIRCSNWSKFPLTEDQKLYAATDAYAGFVIYRKLEIM 230 >gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] Length = 923 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76 +++DTET G P R L + + + + + A + A + + + Sbjct: 351 PILSLDTETTGTDPIRAELVGMSFAYAENQAFYVPVPADRTEAQRIVDKFKPVFENPQTL 410 Query: 77 KIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ ++D+ VL GV ++ P+F T IA + + + HG+ + L K + Sbjct: 411 KVGQNIKYDMLVLANY-GVEIQGPMFDTMIAHYVLQPELH-HGMDYLAEIYLHYETIKIE 468 Query: 136 ---------QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 Q + DL + +YA D L+ ++L++ L Sbjct: 469 ELIGPKGKNQK---NMRDLDPANIYRYACEDADVTLKLKNVLEKELKQNDAEALFCDIEM 525 Query: 185 NFLMDRAELDLLG 197 + A ++ G Sbjct: 526 PLVPVLAYMERNG 538 >gi|281338215|gb|EFB13799.1| hypothetical protein PANDA_001056 [Ailuropoda melanoleuca] Length = 500 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 25/155 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 104 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLKMVLEDKRILKVIHDCRWLSD--CLSHQYG 161 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGINISKAQQS---------- 137 + + VF T++A S T + L+++L L + K Sbjct: 162 ILLNNVFDTQVADVLQFSMETGGFLPNCISSLQESLIRHLKVA-PKYLSFLEERQKLIQE 220 Query: 138 --SDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 W LS L+ A + +L LRL ++ Sbjct: 221 NPEVWFTRPLSPSLLKILALEATYLRPLRLVLLDE 255 >gi|153807650|ref|ZP_01960318.1| hypothetical protein BACCAC_01932 [Bacteroides caccae ATCC 43185] gi|149130012|gb|EDM21224.1| hypothetical protein BACCAC_01932 [Bacteroides caccae ATCC 43185] Length = 214 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%) Query: 21 DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + +D+E ++ ++Q+S + + R+ P LV +L + Sbjct: 44 PILGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVDLLENPGII 99 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINI 131 K+ + D +L + + + Y Q G L+ L I Sbjct: 100 KVGLSLKDDFMMLHKRA---PFN----QQSCIELQDYVRQFGIQDKSLQKIYAILFKEKI 152 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SK+Q+ S+W AD LSD Q QYAA+D + ++L+R G ++A Sbjct: 153 SKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKRTGNYEIAPEE 203 >gi|301091688|ref|XP_002896023.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262095658|gb|EEY53710.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 575 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +++ GL LG+ + K + S+W L+ QL YAA D L + + E+ Sbjct: 500 SSRLGLAAIAATYLGLPLDKRARMSNWERRPLTQAQLHYAALDAHVLVQIYYKMQEQ 556 >gi|242003018|ref|XP_002422581.1| 3-5 exonuclease, putative [Pediculus humanus corporis] gi|212505371|gb|EEB09843.1| 3-5 exonuclease, putative [Pediculus humanus corporis] Length = 522 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 36/192 (18%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK-- 77 + A+ D E + R + ++QL+ + R+ L+ +L D+ K Sbjct: 26 LSALGFDCEWVSYHVRYP-VALLQLATYKKDCYLFRLNKLSIIPFELIEILEDQHIFKLG 84 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA--Q 135 + D L + +RV+ F L Y GL D K +LGI ++K Sbjct: 85 VLPAI--DGLYLSADYDIRVQTTFD------LRYLYPMCKGLGDLAKVVLGIMLNKDGII 136 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 SDW +LS Q +YAA D + + +F LQR G Sbjct: 137 AGSDWECHELSYSQKKYAAMDALVAIDVFKRF---LQRFGW------------------- 174 Query: 196 LGWENVDIFSHS 207 GW+N F++S Sbjct: 175 -GWDNSKTFNYS 185 >gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 933 Score = 73.1 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 72/199 (36%), Gaps = 27/199 (13%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E D+ IAVDTET GL L V + +G + + AP Sbjct: 341 LTEADLARWLEKLNAAKLIAVDTETDGLDYMSANLVGVSFALENGEAAYLPLHLDYLGAP 400 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L + KI +FD+ + G+ ++ + F T + S + Sbjct: 401 KTLEKNTALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEFDTMLLSYTLDS- 458 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164 T +H + D K LG D + L+ Q+ +YAA D L+ Sbjct: 459 TGRHNMDDLAKRYLGHQ---TISFEDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTMKLQ 515 Query: 165 LQFTEKLQRL-GRSDLATS 182 +KLQ G +L S Sbjct: 516 QVLWQKLQPQPGLVELYQS 534 >gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] Length = 918 Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 16/174 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + IA+DTET L +L + + G + +A +AP L Sbjct: 335 LKSAELIAIDTETTSLNYMEAKLVGISFAVEAGKAAYLPLAHDYIDAPEQLDKAVVFEKL 394 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L DE +K+ ++DI++ + F T + S + + ++H + D + Sbjct: 395 QPLLEDENLKKVGQNLKYDISIFANAGICLLGVQFDTMLESYVFNSVASKHNMDDLALKY 454 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 LG ++ + L+ Q+ YAA D L +L++L Sbjct: 455 LGHKNISFEEIAGKGVKQLTFNQISLETAAPYAAEDADITLRLHQHLWSRLEKL 508 >gi|294944235|ref|XP_002784154.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983] gi|239897188|gb|EER15950.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983] Length = 368 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 6/169 (3%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETL-GLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQK 61 I E D A A + D+ET L+P ++ I+Q++ + R+ Sbjct: 65 IDTVEEDARAADAFDKETLLGFDSETKPSLVPGVTNKTAIIQIAS-SSVCGVWRVRQLDV 123 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYTNQHGLK 120 P L +L D K ++ ++ F G++ + + + R L+ Sbjct: 124 LPPTLTKLLTDPSITKASQGATSEVTTVYREFSGLKCQGFVDLHLLAMGLRCTPR--SLQ 181 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 L + KA++ S+W LS QL+YAA+D + Sbjct: 182 GLCALFLHKRLLKAERISNWEQVPLSPSQLEYAATDAWVSRQVLEAMRA 230 >gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] Length = 950 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 76/214 (35%), Gaps = 33/214 (15%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--AAGQKNAPN------- 65 A+ +AVDTET L + L V LS G G I + G + Sbjct: 352 ATAQATGVLAVDTETTSLDEMQAELVGVSLSTGPGRACYIPLGHTTGGDDLFGTTALAPG 411 Query: 66 ----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 L +L DE KI ++D + G+RV P T + S + + Sbjct: 412 QMPMDEALAILKPVLEDESLLKIGQNMKYDWKIFARH-GIRVAPFDDTMLMSYAMFSGLH 470 Query: 116 QHGLKDNLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 HG+ +E L I KAQ + D L YAA D + L Sbjct: 471 GHGMDALSEEYLRHRPIPIKELIGTGKAQITFD--KVPLDKA-TAYAAEDAEITYRLWAA 527 Query: 167 FTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWE 199 F +L R + + + + AE+++ G + Sbjct: 528 FKPQLHRAQVTTVYETLERPLVPVLAEMEMAGVK 561 >gi|194759149|ref|XP_001961812.1| GF15154 [Drosophila ananassae] gi|190615509|gb|EDV31033.1| GF15154 [Drosophila ananassae] Length = 627 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 27/185 (14%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----- 70 + I +D+E L + +LC++Q++ D V +I A + P +L Sbjct: 427 DLQRQQTIYLDSEWLQNICGESQLCLLQIAT-DQFVYLIDCLARESIQPEQWRLLGSKVF 485 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVR-----VRPVFC------------TKIASRLTRTY 113 + K+ D++VL + ++ T + L Sbjct: 486 NNVNILKVGFSMACDLSVLQRSLPLQLRLHTPHHYLDLRSLWLQLKKQHTGV--ELPFGN 543 Query: 114 TNQHG--LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 N+ G L D LG ++K+ Q S+W+ L EQ+ YAA D L + ++ Sbjct: 544 INRAGGALSDLSFLCLGKKLNKSNQCSNWTNRPLRHEQIIYAAIDARCLFLIFKTLQARI 603 Query: 172 QRLGR 176 L + Sbjct: 604 PMLNK 608 >gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] Length = 1009 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 71/208 (34%), Gaps = 37/208 (17%) Query: 2 TTIRVHEGDIPAE----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 ++ V D+ A AA +A DTET L +LC V L+ G I +A Sbjct: 387 RSLYVQVTDLQALEDWIAAATEQGFVAFDTETTALDAMSAKLCGVALALEPGRACYIPLA 446 Query: 58 ------------------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 + P L +L D+ KI ++D ++ +RV P Sbjct: 447 HRAGDGLDFTGAGEIAQLPMESALPRLKALLEDDSVLKIGQNIKYDALIMRRHGDIRVAP 506 Query: 100 VFCTKIASRLT---RTYTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSD 147 T + + R G+ + K LG KAQ + D A D Sbjct: 507 YDDTMLMAYACDQGRGGLAGFGMDELSKRHLGHTPIAFTDVAGKGKAQSTFDCIA---VD 563 Query: 148 EQLQYAASDVVHLHALRLQFTEKLQRLG 175 + +YAA D L F ++ G Sbjct: 564 KATEYAAEDADVTLRLWHLFRARIAAEG 591 >gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19] gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19] Length = 959 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 59/193 (30%), Gaps = 51/193 (26%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------------------AAG 59 IAVDTET L +LC + LS I + Sbjct: 361 EQAQVIAVDTETDDLSATHAKLCGISLSTDTNCACYIPLGHLASDGLDFGGGDDLKQIPL 420 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 + L +L + K+ ++D++VL G+ V P T + S + + HG+ Sbjct: 421 DQAIALLKPVLENRNILKVGQNIKYDLSVLKRY-GIDVAPYDDTMLMSYVVEGGLHGHGM 479 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQL-------------------QYAASDVVHL 160 + + LG + +Q+ QYAA D Sbjct: 480 DELSQLHLGHT-------------PIPFKQVAGSGKTLKSFKFVALKEATQYAAEDADVT 526 Query: 161 HALRLQFTEKLQR 173 L +L R Sbjct: 527 LRLWHVLKPRLVR 539 >gi|301627207|ref|XP_002942768.1| PREDICTED: probable exonuclease mut-7 homolog [Xenopus (Silurana) tropicalis] Length = 654 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 GL ++++LG + K +Q S+W L ++Q+ YAA+D L + + R G + Sbjct: 435 GLSLLVRDILGKPLDKTEQLSNWDKRPLREQQILYAAADAYCLLEVYDVLRQDPARFGLN 494 Query: 178 DLATSC 183 C Sbjct: 495 PNLQQC 500 >gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] Length = 924 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 60/186 (32%), Gaps = 18/186 (9%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + A + V IAVDTET L L + L G I Sbjct: 332 TLVETREQLQALLEELQQVTHIAVDTETTSLDVFEAELAGISLCAEAGKAFFIATTPDAL 391 Query: 62 NAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116 L +L + K ++D+ VL G+ + P+ F T +AS + Sbjct: 392 ERKEVVKQLKPLLENPAITKSGQNLKYDMLVLKKY-GIELAPISFDTMLASYVLNP-DEH 449 Query: 117 HGLKDNLKELLGINISK--------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 H L D LG +K Q+ + + + YA D L Sbjct: 450 HNLDDMALRYLGRTTTKYDELTGTGKQRRHIFEVEK--EALTNYACQDADVAFQLEEVLQ 507 Query: 169 EKLQRL 174 +LQ Sbjct: 508 AQLQAE 513 >gi|217072026|gb|ACJ84373.1| unknown [Medicago truncatula] Length = 187 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 1/95 (1%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I D E + L R LCI+QL+ D + I G L + K+ H Sbjct: 69 VIGFDCEAVDL-CRDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHD 127 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + D L++ FG+++ V T+IA L Q Sbjct: 128 CKRDSEALYFQFGIKLNNVVDTQIAYSLLEEQEGQ 162 >gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] Length = 755 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 69/190 (36%), Gaps = 24/190 (12%) Query: 16 AARYVDAIAVDTETLGLMPRRD-RLCIVQLSPGDGTVDI-IRIA---AGQKN-----APN 65 + D IAVDTET GL D + + + + I +A AGQ+ Sbjct: 133 DLQQEDEIAVDTETTGLDVYNDVIVGL-SFTLPKADYHVYIPVAHKVAGQQLSRRAVLTA 191 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 L +L D KI H ++DI +L G+R+R + T IA + LK+ Sbjct: 192 LKPILTDVNIGKILHNSKYDIHMLIRH-GLRLRGIKHDTMIAMAVLNENEPTLALKNLAT 250 Query: 125 ---ELLGINISKAQQ------SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + G K+ + ++ L D L YAA D + L + L + Sbjct: 251 KYGKYFGFE-DKSYTYEELFGKTSFAEIPL-DAALVYAAKDTHLTYELYKWQRQHLNQKE 308 Query: 176 RSDLATSCCN 185 L Sbjct: 309 SLRLIYDELE 318 >gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] Length = 935 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 29/206 (14%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNL 66 + AE A DTET + P + L + + G + + AG++NA Sbjct: 353 LAAELA--QQSEFCFDTETTHVEPTQAELVGMSFAYKSGEAYYVPVPAGKENAQAVVEIF 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKE 125 +L +EK KI ++D A++F +GV VR P F T +A L +HG+ + Sbjct: 411 RPVLENEKILKIAQNLKYD-AIVFKWYGVEVRGPYFDTMVAHYLLEPEM-RHGMDYLAET 468 Query: 126 LLGIN-------ISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172 L + I K D L+ Q+ YAA D L+ F KL+ Sbjct: 469 YLSYSPISIEMLIGKK------GKDQLNMSQIDLEKVTDYAAEDADITLQLKELFAPKLE 522 Query: 173 RLGRSDLA-TSCCNFLMDRAELDLLG 197 G +L T C + A+L+ G Sbjct: 523 EGGVQELFDTIECPLIKVLADLEYEG 548 >gi|255089332|ref|XP_002506588.1| predicted protein [Micromonas sp. RCC299] gi|226521860|gb|ACO67846.1| predicted protein [Micromonas sp. RCC299] Length = 1038 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%) Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 + GL + +LG + K +Q SDW L+ +Q+ YAA+D L L + Sbjct: 737 RVGLATLVASVLGAYVDKTEQCSDWERRPLTTDQVDYAAADAHVLTVLFDR 787 >gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] Length = 964 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 69/200 (34%), Gaps = 39/200 (19%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------- 56 AR + DTET L LC V L+ G I + Sbjct: 364 ARAAGVVGFDTETDALSSTHAGLCGVSLAVGPNEACYIPLTHEHEPTGDGGLDFGDGGDA 423 Query: 57 --AAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 Q + P L +L D K+ ++D+AV+ GVRV P+ + S + Sbjct: 424 RPPLQQIDKPTALARLKDLLEDPSVLKVGQNIKYDLAVMARR-GVRVAPIDDVMLISYVL 482 Query: 111 RTYTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 + HG+ + + LG K+Q+S + +L + YAA D Sbjct: 483 EGGLHGHGMDELARLHLGHEPIPFKSVAGTGKSQKS--FKHVELKSA-VCYAAEDADVTL 539 Query: 162 ALRLQFTEKLQRLGRSDLAT 181 L +L G S++ Sbjct: 540 RLHRLLKPRLAAEGLSNVYE 559 >gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2] gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2] Length = 935 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 29/210 (13%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------------------ 56 A R +AVDTET L R L + L GT I + Sbjct: 343 AAIRERGVVAVDTETTSLDEMRAELVGISLCVQAGTACYIPLGHRQGGGDLFGSSALTEG 402 Query: 57 -AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 + L +L D+ KI ++D +L G+ V P+ T + S N Sbjct: 403 QMPVAQALALLKPVLEDDAILKIGQNMKYDAKILAR-LGISVAPIDDTMLMSYAMHAGLN 461 Query: 116 QHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 HG+ + LG + + + + + + YAA D L F Sbjct: 462 SHGMDALSDQYLGHQPIAIKPLLGSGKSAVTFDRVPIDQA-VAYAAEDADITLRLWELFK 520 Query: 169 EKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 +L R + + + + A++++ G Sbjct: 521 PQLHRAHVTTVYETLERPLVPVLAQMEMAG 550 >gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265] gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265] Length = 940 Score = 72.7 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKI 78 +AVDTET L L + LS T I A +K L +L + K Sbjct: 369 VAVDTETTSLKTCEAELAGISLSATPATASFISFARTGLSREKTIELLRPLLENPAIAKT 428 Query: 79 FHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 ++D+ VL G+ + P+ F T +AS L T H L D L + +K + Sbjct: 429 GQNLKYDLLVLKNY-GLELSPISFDTMLASYLLNPETT-HNLDDLAARHLKLRTTKYDEL 486 Query: 138 S----------DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + D L+D YA D L ++L Sbjct: 487 TGTGKTKLHIDDVEPRKLTD----YACQDADIALRLTAILQKELAEE 529 >gi|198438094|ref|XP_002131917.1| PREDICTED: similar to MUTator family member (mut-7) [Ciona intestinalis] Length = 921 Score = 72.3 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 28/58 (48%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 GL + LG + K++Q SDW L Q+ YAA D L + + +LQ LG Sbjct: 505 GLSKLALQTLGQALDKSEQISDWERRPLRVTQVTYAALDAFCLLEIYDVLSIRLQELG 562 >gi|167765134|ref|ZP_02437247.1| hypothetical protein BACSTE_03520 [Bacteroides stercoris ATCC 43183] gi|167696762|gb|EDS13341.1| hypothetical protein BACSTE_03520 [Bacteroides stercoris ATCC 43183] Length = 210 Score = 72.3 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 13/176 (7%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + +D+E ++ ++Q+S + + R+ P + Sbjct: 36 AVAYLKKCSILGIDSETRPSFTKGQSH--KVALLQISSEEHCF-LFRLNLTGLTLPVIT- 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-HGLKDNLKELL 127 +L K+ R D +L R + RT+ Q L+ L Sbjct: 92 LLETPAVTKVGLSLRDDFMMLHKRAPFEQRGCIELQ---EYVRTFGIQDRSLQKIYAILF 148 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 G ISK+Q+ S+W AD L+ Q QYAA+D + + E L+R G +LA Sbjct: 149 GEKISKSQRLSNWEADVLTPSQQQYAATDAWACLNIYNRLQE-LKRTGDFELAIEE 203 >gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217] gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217] Length = 921 Score = 72.3 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 27/194 (13%) Query: 9 GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-- 65 D+ A IA+DTET L +L + + G + +A +AP+ Sbjct: 329 DDLDTWIAKLSQAKLIAIDTETTSLNYMDAKLVGISFAIEAGEAAYLPLAHDYLDAPSQI 388 Query: 66 --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116 L +L + K+ ++DI++ G++++ V F T + S + + ++ Sbjct: 389 DMATALEKLRPLLESDNPAKVGQNLKYDISIFAN-VGIKLKGVHFDTMLESYVFNSVASR 447 Query: 117 HGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQF 167 H + + LG K D A L+ Q+ YAA D L Sbjct: 448 HDMDGLALKYLGH---KNISFEDVAGKGAKQLTFNQIDLDTAAPYAAEDADITLRLHQHL 504 Query: 168 TEKLQRLGRSDLAT 181 +L++ +LA Sbjct: 505 WPRLEKE--PELAQ 516 >gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] Length = 924 Score = 72.3 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 63/182 (34%), Gaps = 22/182 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69 A +AVDTET L P + L + LS G I I L + Sbjct: 340 AEETGELAVDTETNSLDPHQADLVGISLSSKVGKACYIPIGHKSSKCINKNDVIKKLKPL 399 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D +KI +FD VLF G+ + + T + S + N+H + + LG Sbjct: 400 LEDPSVKKIGQNIKFDFIVLFKQ-GIEMTSMEDTMLMSYVLDAGKNRHNMDTLSEIHLGH 458 Query: 130 NI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 K SD + YAA D L +F++ L+ ++ Sbjct: 459 KTISFKEIVGTGKKEINFSDVEI----ERAKDYAAEDADITFRLYKKFSKNLKLEKMINI 514 Query: 180 AT 181 Sbjct: 515 YE 516 >gi|308808822|ref|XP_003081721.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri] gi|116060187|emb|CAL56246.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri] Length = 408 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 31/191 (16%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-----NAPNLVGML 70 A R D +AVD E + +M R + ++Q + D I A G K + + +L Sbjct: 185 AMREADVVAVDCEGV-MMSRTGPITVLQCATRDKIYLIDIQALGVKAFGARGSGGMRDLL 243 Query: 71 VD-EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA------------------SRLTR 111 E K+ R D LF+ + VR+ V +I ++ T Sbjct: 244 ESREAPLKLMFDCRMDSDALFHQYDVRLENVMDVQILDLATRRALGLMIDRVAGIAKCTD 303 Query: 112 TYTNQHGLKDNLKELLGINISK---AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + + + + L + + K ++S W+ L+++ +YAA DV L L + Sbjct: 304 KHLTEA--ETAVAADLKVRVRKLYAVEESQLWAERPLTEDARRYAALDVWLLIKLYDKMK 361 Query: 169 EKLQRLGRSDL 179 L R + D Sbjct: 362 FDL-RDDKDDW 371 >gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237] gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237] Length = 945 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 15/189 (7%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREK 77 ++ DTET GL P L + S I A + A L DE EK Sbjct: 373 SVCFDTETTGLNPLTAELVGIAFSWEASKGFYIPFPADKTEAQEIIEQLRPFFEDEAIEK 432 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI------ 131 I ++DI VL F T +A L +H ++ + L Sbjct: 433 IGQNLKYDIKVLDKYNVKVKGKCFDTMLAHYLINP-DMRHNMEVLAETYLNYTPVSITEL 491 Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLM 188 K + + L + Q +YAA D + L QF +L+ +L T L Sbjct: 492 IGKKGKNQLNMRDVPLPN-QTEYAAEDADITYQLAQQFKPELEEAKTQELFTDIEIPLLH 550 Query: 189 DRAELDLLG 197 A+++L G Sbjct: 551 VLADMELEG 559 >gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] Length = 926 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 19/189 (10%) Query: 4 IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + E D+ + D +AVDTET L R +L + LS G I A Sbjct: 330 IVLTEQDLATWIEKIKSADLVAVDTETTSLDYMRAKLVGISLSTAPGEACYIPFAHDYMG 389 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 AP L L D K+ ++D++VL G+ +R + F T + S + Sbjct: 390 APEQLQPEFALEKLKPYLEDPAFPKVGQNLKYDMSVLAQH-GISLRGITFDTMLESYVLD 448 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165 + ++H + LG K + A L+ Q+ YAA D L Sbjct: 449 SVASRHDMDSLALNYLGEETIKFADVAGKGAAQLTFNQVALDQAGPYAAEDADITLRLHQ 508 Query: 166 QFTEKLQRL 174 ++ Sbjct: 509 TLWPRVAAE 517 >gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] Length = 954 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76 D ++DTET G P L + S + + + A ++ A L ++ +EK Sbjct: 382 DFFSLDTETTGTDPITAELVGMSFSFAENQAFYVPVPANREEALAIVKKLKPIIENEKTL 441 Query: 77 KIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 KI ++D+ VL GV VR P+F T IA + + + HG+ + L K + Sbjct: 442 KIGQNIKYDMLVLGNY-GVEVRGPMFDTMIAHYVLQPELH-HGMDYLAEVYLKYETIKIE 499 Query: 136 ---------QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 Q + DLS + +YA D L+ ++L ++L + Sbjct: 500 ELIGPKGKNQK---NMRDLSPTSVYKYACEDADVTLKLKKVLEKELIENNVNELFQTIEM 556 Query: 185 NFLMDRAELDLLG 197 + A ++ G Sbjct: 557 PLVPVLAYMERNG 569 >gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik] gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik] Length = 600 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 33/198 (16%) Query: 3 TIRVHEG--DIP--AECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGT-VDIIR 55 TI V E D+ + ++ + +AVDTET GL R +VQ D V + Sbjct: 14 TINVVEEPEDLDGFRDFIRKHQNCLAVDTETTGLDIYSSTFRCRLVQFGTQDEAWVLPVD 73 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT- 110 + Q + D+ + + +D+ VL + FG+++ ++ T+I ++L Sbjct: 74 ESPTQLQQETREAL--DKLGKIVMQNASYDLQVLDHCFGIKMEDLWPKVLDTQILAKLVD 131 Query: 111 ----RTYTNQHGLKDNLKELLGIN-----------ISKAQQSSD---WSADDLS-DEQLQ 151 H L++ + E + + ++K +++ WS DL E L Sbjct: 132 PRPYGAGGFGHSLEELIAEFISKDQAKDVKGLMAKLAKEHKTTKAKIWSTIDLFHPEYLT 191 Query: 152 YAASDVVHLHALRLQFTE 169 YA D + + + T Sbjct: 192 YAGMDTIFTARICRKLTR 209 >gi|307103312|gb|EFN51573.1| hypothetical protein CHLNCDRAFT_140064 [Chlorella variabilis] Length = 969 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 39/173 (22%) Query: 16 AARYVDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIA-----AGQKNAPNLVG 68 + + +D E G ++Q+S + +A AG A +V Sbjct: 421 DEELLPVLGLDLEWQPDGENSSPP--SLLQISTDAEVWLVDLLALTGREAGDALAAAIVP 478 Query: 69 MLVDEKREKIF-------------HYGRF-------DIAVLFYTFGVRVRPVFCTKIASR 108 +L ++ K+ H F D++ L+ + + + R Sbjct: 479 VLSSDRVYKLGCGIASDFRKLARHHPAAFSLARGCLDLSTLWRSCHIE-------QTGKR 531 Query: 109 LTRTYTNQHG---LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 T Y + G L + +LG + K+QQ SDW LS +QL+YAA D Sbjct: 532 STAGYKKRVGEVSLSVLAQSVLGKPLDKSQQVSDWGRRPLSSQQLEYAALDAH 584 >gi|255074453|ref|XP_002500901.1| predicted protein [Micromonas sp. RCC299] gi|226516164|gb|ACO62159.1| predicted protein [Micromonas sp. RCC299] Length = 316 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 31/186 (16%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--- 65 D E AR + AVD E + L R + + Q++P +G V ++ +A A + Sbjct: 86 ADAMRELIARG-EPCAVDFEGVAL-SRTGAISLAQVAPPNGPVYLVDVACMGAAAFDEGR 143 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL-------TRTYTNQHG 118 L +L K+ R D L + FGVR+R VF ++A L + G Sbjct: 144 LGELLGATHPLKLVFDCRGDADALHHQFGVRMRGVFDVQVAFCLKKDVDHGGKRGAYLMG 203 Query: 119 LKDNLKELLGI------NIS--KAQQSS----------D-WSADDLSDEQLQYAASDVVH 159 L+ LKE G+ + K+ +S D W+ + + ++YAA+DV + Sbjct: 204 LRKALKECPGLDDEARHELDAVKSAGASLFAPELGGSYDAWTKRPMHPDLVKYAAADVTY 263 Query: 160 LHALRL 165 LH + Sbjct: 264 LHHMHR 269 >gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149] gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149] Length = 933 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 62/181 (34%), Gaps = 29/181 (16%) Query: 21 DAIAVDTETLGLMPRRD------------RLCIVQL----SPGDGTVDIIRIAAGQ---- 60 +AVDTET GL + C + L + D +A GQ Sbjct: 346 GYVAVDTETTGLNDMTADLVGVSLCVEPGKACYIPLIHKAASSDDLFGSDDLAEGQMPLE 405 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L +L DE KI ++D + G+ V P+ T + S + HG+ Sbjct: 406 TALEMLKPVLEDESILKIGQNMKYDAKIFAQ-VGITVAPIDDTMLMSYAMHGGLHGHGMD 464 Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + LG + + + + L+D + YAA D L QF L R Sbjct: 465 ALSERYLGHTPLPIKPLLGSGKSAITFDKVPLNDA-VPYAAEDADVTLRLWQQFKPALHR 523 Query: 174 L 174 Sbjct: 524 A 524 >gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] Length = 984 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 83/243 (34%), Gaps = 57/243 (23%) Query: 18 RYVDAIAVDTETL-------GLMPRRDRL-CI-VQLSPGD-------------------- 48 R V IA+DTET+ + R RL + + ++PG+ Sbjct: 368 REVPYIAIDTETVIEPGAPFDVDALRSRLVGLSIAVAPGEAYYLPFAHRRDDGSGNLALL 427 Query: 49 ---------------GTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYT 92 G + + + +A L ML D KI ++D+ VL + Sbjct: 428 AGDTGTGIVGRRINAGAPEPVNLPPFDSDACAPLRAMLEDPSVTKIAQNAKYDLLVL-RS 486 Query: 93 FGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS-------KAQQSSDWSADD 144 GVRV V F T +AS + HGL E LG ++ K + + Sbjct: 487 SGVRVAGVGFDTMLASYVLDPGRRSHGLDLLALEQLGHTMTAYDTLVGKGKTQLPFDVAP 546 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWE-NVD 202 + Y+ DV LR + L L + AE++ G ++D Sbjct: 547 VDTA-RDYSCEDVDITMRLRAKLEPMLAEHALLSLFQEIEVPLVSVLAEMEWEGIAIDLD 605 Query: 203 IFS 205 F+ Sbjct: 606 WFA 608 >gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514] gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514] Length = 947 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 36/182 (19%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLS------PGDGTVDIIRIAAGQKNAPNLVGML 70 + DTET L + R ++ L+ G ++ + Sbjct: 370 LAGLKTFCFDTETTSLDTKEAR--LIGLAFAFEKQKGFYVAVPADPEEAREILQEFRAVF 427 Query: 71 VDEKREKIFHYGRFDIAVL-FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG- 128 +E+ +K+ H ++D+AVL ++ GV + +F T +A L +HG+ + LG Sbjct: 428 ENEQIQKVGHNLKYDLAVLKWHGVGVHGK-LFDTMLAHSLIEPEM-RHGMDYMSEVYLGY 485 Query: 129 --INISK--AQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR 173 I+I+K + S +QL +YAA D L + L+ Sbjct: 486 SPISITKLIGDEKS---------KQLNMADVPVAKVAEYAAEDADVTWQLWEKLEPLLKE 536 Query: 174 LG 175 G Sbjct: 537 KG 538 >gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145] gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145] Length = 924 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 18/176 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----------QKNAPNL 66 + + IA DTET L +L V S +G I +A L Sbjct: 339 LKSAEVIAFDTETTSLNYMEAQLVGVSFSIAEGEAVYIPVAHDYVGVEKQVDRDWLLKVL 398 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 +L D K+ ++D +L G+++R + T +AS + + ++H + + Sbjct: 399 KPLLEDSSIAKVGQNLKYDAHILRRY-GIKLRGIKNDTMLASYVFNSVGSRHDMDTLSLQ 457 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG 175 L K ++ + A L+ Q++ YAA D L +K+ + G Sbjct: 458 YLNHKPIKFEEIAGKGAKQLTFNQIELAQAAPYAAEDADITLRLHHILWDKVHQTG 513 >gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168] gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168] Length = 926 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 72/216 (33%), Gaps = 25/216 (11%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+I V I A+ ++A A D ET L R+ LS GT + ++ Sbjct: 334 TSIAVLASYIDEILASEPIEA-AFDCETDSLDRIHTRIVGFSLSRRAGTGIYVPLSVPDA 392 Query: 62 NAPN-----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRL 109 L + H G+FD VL R + T +A+ L Sbjct: 393 LLTQTLIEKQDAFVQLERLFSVPACTLAMHNGKFDYEVLRSNGLAEPRCRIADTMVAAWL 452 Query: 110 TRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 + + L+ + LG+ + K +D L + YAA D Sbjct: 453 LDPDRSAYSLEALAADKLGLETIPYTDVVPKGSTFAD---IPLEQA-VPYAAEDADLTWQ 508 Query: 163 LRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L F +L DL + L AE++L G Sbjct: 509 LYRLFLPRLAAAKLGDLFWNLEMPVLPILAEMELDG 544 >gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 896 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 18/186 (9%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + + + + A DTET L L + +G I + Sbjct: 301 IVATKEQLDDLVKELKNSSSFAFDTETDSLNTYEANLVGLSFCAKEGRAYYIPLQHRYLG 360 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P +L + VD ++ K+ H +FD +L V V T I + + ++ Sbjct: 361 VPQQLELEIVLDSLKPVFVDSQKSKVAHNFKFDEKILSKYGVKIVNQVNDTMIMAYVLKS 420 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQ 166 +H + KE LGI + + L+ +Q+ YAA D L Sbjct: 421 SG-KHDMDSLSKEHLGIEPIAYTTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNH 479 Query: 167 FTEKLQ 172 F + L+ Sbjct: 480 FLKMLK 485 >gi|109086093|ref|XP_001085031.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Macaca mulatta] Length = 1432 Score = 72.3 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + I++ L +L ++ +K I L F Sbjct: 96 KVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAIKK----AGVGIEGDQWKLLRDF 151 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A++ + T L +K LLG + K+ + S+WS L+++Q Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLSGLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210 Query: 151 QYAASD 156 YAA+D Sbjct: 211 LYAATD 216 >gi|169615583|ref|XP_001801207.1| hypothetical protein SNOG_10950 [Phaeosphaeria nodorum SN15] gi|111060329|gb|EAT81449.1| hypothetical protein SNOG_10950 [Phaeosphaeria nodorum SN15] Length = 637 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 23/158 (14%) Query: 34 PRRDRLCIVQLSPGDGTVDI-IRIAAG----QKNAPNLVGMLVDEKREK----IFHYGRF 84 ++++ ++Q++ I I + G AP+L ++ D K I H Sbjct: 87 TLQNKIGLIQIASESKIGLIHIGLHPGKTVQDIIAPSLKKLIEDPSIGKLGVGILHA--- 143 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--------QHGLKDNLKELLGINISKAQ- 135 D A L F + R RL + N L +++ LG + K Sbjct: 144 DFARLRRFFKLSPRGAVELSHLYRLVKFGGNKPEHVSTKMVSLARIVEDQLGHPLYKGDV 203 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT-EKLQ 172 ++S+WS LS +Q+ YAA D + L ++LQ Sbjct: 204 RTSNWSK-PLSTDQINYAAGDAYAGYMLYHCMNYKRLQ 240 >gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 896 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 18/186 (9%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + + + + A DTET L L + +G I + Sbjct: 301 IVATKEQLDDLVKELKNSSSFAFDTETDSLNTYEANLVGLSFCAKEGRAYYIPLQHRYLG 360 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P L + VD ++ K+ H +FD VL V V T I + + ++ Sbjct: 361 VPQQLELEIVLDILKPIFVDSQKSKVAHNFKFDEKVLSKYGVKIVNQVNDTMIMAYVLKS 420 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQ 166 +H + KE LGI + + L+ +Q+ YAA D L Sbjct: 421 SG-KHDMDSLSKEHLGIEPIAYTTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNH 479 Query: 167 FTEKLQ 172 F + L+ Sbjct: 480 FLKMLK 485 >gi|160889123|ref|ZP_02070126.1| hypothetical protein BACUNI_01544 [Bacteroides uniformis ATCC 8492] gi|270296116|ref|ZP_06202316.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156861130|gb|EDO54561.1| hypothetical protein BACUNI_01544 [Bacteroides uniformis ATCC 8492] gi|270273520|gb|EFA19382.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 207 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 29/176 (16%) Query: 13 AECAARYVDAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAP 64 A + + +D+ET R ++ ++Q+S + + R+ P Sbjct: 36 AVAYLKSCPLLGIDSET------RPSFTKGQIHKVALLQISSEEHCF-LFRLNLTGLTLP 88 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----L 119 + +L + K+ R D +L + A + Y G L Sbjct: 89 VIT-LLENPSVTKVGLSLRDDFMMLHKRAPFE-------QHACIELQEYVRAFGIQDKSL 140 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + L G ISK+Q+ S+W A+ L++ Q YAA+D + + E L+R G Sbjct: 141 QKIYAILFGEKISKSQRLSNWEAETLTEPQKLYAATDAWACLNIYNKLQE-LKRTG 195 >gi|91092754|ref|XP_973448.1| PREDICTED: similar to GM14514p [Tribolium castaneum] gi|270014889|gb|EFA11337.1| hypothetical protein TcasGA2_TC010877 [Tribolium castaneum] Length = 237 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 12/173 (6%) Query: 11 IPAECAARYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 + E A V + D E + ++Q+SP T +I+I+ +K L Sbjct: 63 LADE--AADVLVLGFDVEWPF-SFQTGPGKAALIQISPDLDTCYLIQISDLKKLPKGLSV 119 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 +L K + DI L F + + + + + + ++ + Sbjct: 120 LLAHPKVRITGVNIKNDIRKLSRDFAGFDVEKNIENCIDSGVLANQILPFQQRWSMERLV 179 Query: 124 KELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 LL + ISK + S W LS EQL YAA+D L + ++ + Sbjct: 180 TFLLKMTISKDNKVRMSKWHVSPLSKEQLDYAATDAYASLVLYNELKKREAQE 232 >gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] Length = 924 Score = 72.0 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 22/182 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69 A +A+DTET L + L + LS G I I + L + Sbjct: 340 AEEAGELAIDTETSSLDAHQTDLVGISLSTKIGKACYIPIGHKFKGCLKKETVIKKLKPL 399 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK-ELLG 128 L D+ +KI +FD VL+ G+ + + T + S + N+H + + L Sbjct: 400 LEDKSVKKIGQNIKFDFIVLYKH-GINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQH 458 Query: 129 INIS---------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 IS K SD +L +YAA D + L F++ L+ +++ Sbjct: 459 KTISFKEIVGTGKKEINFSD---VELDKAM-EYAAEDADITYRLYKIFSKNLKLEKLTNI 514 Query: 180 AT 181 Sbjct: 515 YE 516 >gi|242277603|ref|YP_002989732.1| 3'-5' exonuclease [Desulfovibrio salexigens DSM 2638] gi|242120497|gb|ACS78193.1| 3'-5' exonuclease [Desulfovibrio salexigens DSM 2638] Length = 198 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 11/167 (6%) Query: 8 EGDIPAECA-ARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 E D+PA + + DTE + ++QL+ D V ++ + Sbjct: 34 EEDVPAAIEELSRCELLGFDTETRPVFRKGVSYPP--SLIQLATED-CVFLLHLNHIS-L 89 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 + ++ +L K D+ L + +R TN GL++ Sbjct: 90 SDHIKEVLSSADIIKTGVAVINDVKELRDVSPFEGKGFVDLGDLARSLEMQTN--GLRNL 147 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 LLG ISK Q S+W +L+ +Q+ YAA+D + L+F + Sbjct: 148 AANLLGFRISKGVQCSNWGRKELTPQQITYAATDAWVSREIYLKFQD 194 >gi|152995426|ref|YP_001340261.1| 3'-5' exonuclease [Marinomonas sp. MWYL1] gi|150836350|gb|ABR70326.1| 3'-5' exonuclease [Marinomonas sp. MWYL1] Length = 195 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 12/166 (7%) Query: 1 MTTIRVHEGDIPAECAARYVD---AIAVDTETLGLMPRR-----DRLCIVQLSPGDGTVD 52 ++ I + E ++ AE A + ++ ++ DTE + ++QL+ + Sbjct: 20 LSDIHIVENEVDAEQAIKALENETSLGFDTE--SKPIFQKGQVSPGPSLIQLAT-ESKAF 76 Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 + A +L + K +KI + D L + + + + Sbjct: 77 LFPTRFPSAVAAA-KQILSNPKIKKIGFGIKDDNKELRNKLDIDICNTQDLSVTLKQLAG 135 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 N G + + +LG + K Q S+W A L + Q+ YAA+D Sbjct: 136 EKNTIGARAAVAMVLGKRLGKGAQKSNWGAYPLKEHQILYAANDAH 181 >gi|115463391|ref|NP_001055295.1| Os05g0357100 [Oryza sativa Japonica Group] gi|55168078|gb|AAV43946.1| unknown protein [Oryza sativa Japonica Group] gi|113578846|dbj|BAF17209.1| Os05g0357100 [Oryza sativa Japonica Group] gi|215716995|dbj|BAG95358.1| unnamed protein product [Oryza sativa Japonica Group] gi|218196622|gb|EEC79049.1| hypothetical protein OsI_19612 [Oryza sativa Indica Group] gi|222631262|gb|EEE63394.1| hypothetical protein OsJ_18206 [Oryza sativa Japonica Group] Length = 580 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 25/165 (15%) Query: 18 RYVDAIAVDTETLGLMPRRDR------LCIVQLSPGDGTVDIIRIAAGQKNAPN-----L 66 I VD E P ++ + I+Q++ D I + ++ P Sbjct: 391 EACKIIGVDCE---WKPNFEKGSKPNKVSIIQIAS-DKKAFIFDLIKLYEDDPKVLDSCF 446 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKD 121 ++ K+ + + D+ L ++G + + +L + T GL Sbjct: 447 RRIMCSSNILKLGYNLQCDLHQLSQSYGELKCFQSYEMLLDIQ---KLFKGTTG--GLSG 501 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 K++LG ++K +++S+W L+ Q +YAA D V L + Sbjct: 502 LSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHH 546 >gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus influenzae 10810] Length = 935 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 358 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 417 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 418 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 475 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 476 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 527 >gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] Length = 931 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 70/208 (33%), Gaps = 30/208 (14%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR----------------IAAGQK 61 R + +AVDTET L R L + L G I +A GQ Sbjct: 341 RAIGHVAVDTETTSLNEMRAELVGISLCVEAGIACYIPLIHKAAASDDLFGSADLAEGQL 400 Query: 62 N----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + L +L D KI ++D + GV+V P T + S + H Sbjct: 401 DTNVVLDLLKPVLEDPAVLKIGQNMKYDAKIFARY-GVKVAPFDDTMLMSYAQNAGKHNH 459 Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + + LG + + + + + ++D ++YAA D L Sbjct: 460 SMDSLSERYLGHSPISIKTLLGTGKSAITFDKVPVADA-VKYAAEDADVTLRLWQFLGPL 518 Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLG 197 L + + + AE+++ G Sbjct: 519 LHIEKVTKVYERMERPLVPVLAEMEMHG 546 >gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] Length = 968 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 63/201 (31%), Gaps = 33/201 (16%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ P AAR +A+DTET L L + L+ G + + G Sbjct: 359 TVTELAALQPFLDAARAGGLLAIDTETDSLDALNANLVGLSLAVAPGRACYVPLRHGPPP 418 Query: 63 AP---------------------NLVGMLVDEKREKIFHYGRFDIAVLFY--TFGVRVRP 99 L +L D KI H ++D+ VL + + P Sbjct: 419 GSGDLLAEAPAAPAQLSQAEVVEALRPLLADPAVLKILHNAKYDLEVLARPEHGALDITP 478 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSAD-DLSDEQLQ---- 151 V T + S + HG+ + LG I + + A S L Sbjct: 479 VDDTMLISYSMDAGRHGHGMDELSLRHLGHRPIPFDEVTGTG--RARIPFSQVALDKATA 536 Query: 152 YAASDVVHLHALRLQFTEKLQ 172 YAA D L +L+ Sbjct: 537 YAAEDADVTLRLWQALRPRLR 557 >gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] Length = 941 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 30/205 (14%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR----------------IAAGQKNAP 64 +AVDTET L R L V L G I +A GQ + Sbjct: 354 GYVAVDTETTSLNEMRAELVGVSLCVTAGEACYIPLTHKSGAADDLFGDDALAEGQMDFE 413 Query: 65 N----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L ML D+ KI ++D + G+ V P+ T + S ++HG+ Sbjct: 414 ECLAILKPMLEDDSILKIGQNMKYDAKIFKR-VGIDVDPIDDTMLMSYAMNAGLHRHGMD 472 Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 ++ LG + + + ++ + D ++YAA D L F +L R Sbjct: 473 VLSEQYLGHTPIPIKPLLGAGKSAKTFNRVPVEDA-VRYAAEDADITLRLWEVFKPQLHR 531 Query: 174 LGRSDLATS-CCNFLMDRAELDLLG 197 + + + + A++++ G Sbjct: 532 KQVTSVYETMERPLVPVLAKMEMHG 556 >gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 996 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 29/192 (15%) Query: 17 ARYVDAIAVDTETLGLMPRR------------DRLCIVQL-----SPGD--GTVDIIRIA 57 A +AVDTET L P R C + L GD G +++ Sbjct: 401 ATDAGVVAVDTETTSLDPMSCELVGVSLAITPGRACYIPLQHREPGDGDLFGGAALLQGQ 460 Query: 58 AGQKNA-PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 A L +L D+ KI H ++D+ VL GV V P+ T + S T N Sbjct: 461 IPLDKAIATLKPLLEDDAVLKIAHNMKYDLLVLARY-GVDVAPIEDTMLISYTLDTGRNN 519 Query: 117 HGLKDNLKELLGIN------ISKAQQ-SSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 HGL + + LG ++ + + ++ L +YA D L Sbjct: 520 HGLDELTLKHLGHENIPFSAVAGSGRNFIGFARVALDRA-TEYATEDADVTLRLWRALKP 578 Query: 170 KLQRLGRSDLAT 181 +L +++ Sbjct: 579 RLAAEHMTNVYE 590 >gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] Length = 950 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 71/194 (36%), Gaps = 31/194 (15%) Query: 7 HEGDIPAECAARYVDA------IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 +E + AR+V+ IAVDTET GL L V + +G + + Sbjct: 354 YENILTEADLARWVEKLSAEKLIAVDTETDGLDYMSANLVGVSFALENGEAAYLPLHLDY 413 Query: 61 KNAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 AP L +L + K+ +FD+ + G+ +R + F T + S Sbjct: 414 LGAPKTLEKSTALAALKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIEFDTMLLSYT 472 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHL 160 + T +H + D K LG D + L+ Q+ +YAA D Sbjct: 473 LDS-TGRHNMDDLAKRYLGHQ---TIGFEDIAGKGKNQLTFNQIPLEQAGEYAAEDADVT 528 Query: 161 HALRLQFTEKLQRL 174 L+ KLQ Sbjct: 529 MKLQQVLWGKLQSQ 542 >gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489] gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489] Length = 946 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 25/194 (12%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----MLVDEKREK 77 ++ DTET GL P L + S I Q A L+ DEK EK Sbjct: 374 SVCFDTETTGLNPLTAELVGIAFSWEASKGFYIPFPEDQDQAQELIEQLRPFFEDEKIEK 433 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130 I ++DI VL + F T +A L +H + + L Sbjct: 434 IGQNLKYDIKVLRKYNLIIKGAYFDTMLAHYLINP-DMRHNMDVLAETYLNYTPISITEL 492 Query: 131 ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 I K + LS ++Q +YA D + L F +L+ +L Sbjct: 493 IGKK------GKNQLSMRQVPIEKQTEYAVEDADITYQLASHFKPELKDAKTEELFNDIE 546 Query: 184 CNFLMDRAELDLLG 197 L A+++L G Sbjct: 547 IPLLSVLADMELEG 560 >gi|294953663|ref|XP_002787876.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239902900|gb|EER19672.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 352 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 46/211 (21%) Query: 22 AIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKNA--------PNLV 67 A+AVD GL RD +LC+ S +V ++ I +A +L Sbjct: 131 AMAVD--FEGLNLSRDGAMSLAQLCL---SSDPKSVYVVDITRLGFHAFHTTTHTGTSLK 185 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS---RLTRTYTNQ--HGL-KD 121 ++ D + EK+F+ R D+ L+Y F V + VF ++A R R T + GL K Sbjct: 186 SIMEDARIEKVFYDPRNDVDALYYQFNVAPQNVFDLQLAEVALRRARGLTVRYVIGLFKC 245 Query: 122 NLK--ELL---------------GINI--SK-AQQSSDWSADDLSDEQLQYAASDVVHLH 161 + EL G + K ++ L + YA+ DV +L Sbjct: 246 LIAQPELFTQPAMMDFARRINDAGKALYEPKHGGSFKVFTQRPLHTSIIVYASHDVRYLL 305 Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 L+ FT++L DL C +RA+ Sbjct: 306 PLKDLFTKQLNEAS-DDLYERVCKVSAERAQ 335 >gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 926 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 67/196 (34%), Gaps = 37/196 (18%) Query: 10 DIPAE----CAARYVDAIAVDTETLGLMPRRDRL------------CIVQL--SPGDGTV 51 D+ A A + DTET GL P R +L C + + S G+ Sbjct: 322 DLAALDRWVAQASKAGLVGFDTETTGLDPLRAKLVGVSLALAPGRACYIPVMHSSGEAQG 381 Query: 52 DII--------RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 D++ ++ L +L D K+ H ++D+ V+ G+ ++ T Sbjct: 382 DLLGGPSADAPKLIPAADILARLKPLLADPAVLKVGHNIKYDMQVM-AGLGLAIQSFDDT 440 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINI--------SKAQQSSDWSADDLSDEQLQYAAS 155 + S + ++ HGL + LG S Q + + L YAA Sbjct: 441 MLLSYVLDGASHGHGLDELCLLHLGHRNISFAEVCGSGRNQVT-FDRVPLDKA-CAYAAE 498 Query: 156 DVVHLHALRLQFTEKL 171 D L +L Sbjct: 499 DADMTLRLHGLLKPRL 514 >gi|195155440|ref|XP_002018612.1| GL25861 [Drosophila persimilis] gi|194114765|gb|EDW36808.1| GL25861 [Drosophila persimilis] Length = 625 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 44/201 (21%) Query: 10 DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54 D+ +C + I +D+E + + +LC++Q++ I Sbjct: 402 DLADDCLITVDTATQFDLMLGHLQREHIIYMDSEWVQNVCGESQLCLLQIATVRNVYLID 461 Query: 55 RIAAGQKNAPNLVGM----LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI----- 105 +A A + + + K+ D+ VL + +++R ++ Sbjct: 462 CLARQSITADHWRALGADVFNNMNILKVGFSMYSDLTVLQRSLPLQLRL----QLSHHYL 517 Query: 106 --------------ASRLTRTYTNQHG--LKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 A RL N+ G L D LG ++K+ Q S+W+ L EQ Sbjct: 518 DLRTLWLELKKQRYAIRLPFGNVNRAGDALSDLSLVCLGKKLNKSNQCSNWANRPLRREQ 577 Query: 150 LQYAASDVVHLHALRLQFTEK 170 + YAA D L + + Sbjct: 578 ILYAAIDARCLMLIYNTLLNR 598 >gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] Length = 937 Score = 72.0 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 68/207 (32%), Gaps = 29/207 (14%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58 R +A+DTET L R L + L G+ I + Sbjct: 347 RERGHVAIDTETTSLDEMRAELVGISLCVEAGSACYIPLGHRAGGGDLFGSLDLVADQIP 406 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L +L D+ KI ++D + G+RV P+ T + S + HG Sbjct: 407 LDLALSMLKPVLEDDAILKIGQNMKYDAKIFARH-GIRVAPIDDTMLMSYAMHAGRHGHG 465 Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + LG + + + + + YAA D L F +L Sbjct: 466 MDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVDQA-VCYAAEDADVTLRLWRLFKPQL 524 Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197 R + + + + AE+++ G Sbjct: 525 HRARVTTVYETLERPLVPVLAEMEMAG 551 >gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] Length = 953 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 68/195 (34%), Gaps = 27/195 (13%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREK 77 ++ DTET GL P L + S G + ++ A L E +K Sbjct: 381 SVCFDTETTGLNPLTAELVGIAFSWETGKGFYLPFPEDKQEAQAIIEALRCFFEAENIQK 440 Query: 78 IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------ 130 I ++DI VL V V+ P+F T +A L +H + + L Sbjct: 441 IGQNLKYDIKVLAKY-NVEVKGPLFDTMLAHYLINP-DMRHNMDVLAETYLNYTPVSITE 498 Query: 131 -ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 I K + LS D+Q +YA D L+ F ++L L Sbjct: 499 LIGKK------GKNQLSMRDVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFDDI 552 Query: 183 CCNFLMDRAELDLLG 197 L A ++L G Sbjct: 553 EVPLLRVLAAMELEG 567 >gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS] gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS] Length = 950 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 67/197 (34%), Gaps = 25/197 (12%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLV 71 AVDTET L L + S G + +A L +L Sbjct: 372 LLENSGGFAVDTETTSLDTFTAELAGISCSVKPGEAFFVYFGTPGLDAKTTVARLKPLLE 431 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + + K ++DI VL GV + PV F T +AS + +H L D LG Sbjct: 432 NPEIPKTGQNLKYDILVLKKY-GVELAPVGFDTMLASYVLNPEA-RHNLDDMAALYLGRQ 489 Query: 131 ISKAQQSSDWSA----------DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +K + LSD YA D LR E+L++ +L Sbjct: 490 TTKYTELVGTGKQTIGIFEVEPRKLSD----YACQDADIALRLRYSLEEQLEKT--PELL 543 Query: 181 TSC--CNFLMDRAELDL 195 C F + R D+ Sbjct: 544 EVCRKLEFPLVRVLADM 560 >gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus] Length = 924 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 70/211 (33%), Gaps = 23/211 (10%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAA 58 I + + A + +A+DTET +V ++ G G + Sbjct: 335 IVRNRQQLDELVAHLDGFERLAIDTETTSTEAMWA--SLVGIAFSWEKGQGYYVPTPLPD 392 Query: 59 GQKNAPNLVGM--LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 G L + ++ + K+ ++D+ VL P F T +A L Sbjct: 393 GTPTETVLERLAPILRRAQRKVGQNLKYDLVVLARHGVQVPPPYFDTMVAHYLIAPE-EP 451 Query: 117 HGLKDNLKELLGINI--------SKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQF 167 H L ++ L + S Q S D+S +++ YA D L Sbjct: 452 HNLDVLARQYLRYQMVSITELIGSGRDQKS---MRDVSIDEVGPYACEDTDIALQLADVL 508 Query: 168 TEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 +L R G +A + A+++ G Sbjct: 509 AAELDRHGLRHIAEEMEFPLIEVLADMERTG 539 >gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36] gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36] Length = 951 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 75/194 (38%), Gaps = 21/194 (10%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 + +++DTET G P L + S + + + A ++ + +EK Sbjct: 378 SEILSIDTETTGTEPMDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKS 437 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ +L GV+V+ +F T +A + + +H + + L I+I Sbjct: 438 MKVGQNIKYDMIILQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 495 Query: 132 SK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 K Q + DLS E + +YA D L+ ++L+ G L Sbjct: 496 DKLIGARGKNQK---NMRDLSPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEIE 552 Query: 184 CNFLMDRAELDLLG 197 + ++ G Sbjct: 553 MPLVPVLVNIESNG 566 >gi|332240842|ref|XP_003269596.1| PREDICTED: Werner syndrome ATP-dependent helicase [Nomascus leucogenys] Length = 1433 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + I++ L +L ++ +K I L F Sbjct: 96 KVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A++ + T L +K LLG + K+ + S+WS L+++Q Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210 Query: 151 QYAASD 156 YAA+D Sbjct: 211 LYAATD 216 >gi|159464515|ref|XP_001690487.1| hypothetical protein CHLREDRAFT_169205 [Chlamydomonas reinhardtii] gi|158279987|gb|EDP05746.1| predicted protein [Chlamydomonas reinhardtii] Length = 185 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT-EKLQR 173 E+LG + K QQ SDW+A LS+ QL YAA+DV L ++ T ++L+ Sbjct: 34 EVLGKPLDKEQQRSDWAARPLSESQLAYAAADVACLVSVFDALTSDELEE 83 >gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby] gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby] Length = 896 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 22/199 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68 +DTET L + L + L+ + I +A + L Sbjct: 317 LEQSQQFCIDTETTNLDVMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKP 376 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + KI ++D +VL G+ ++ + + T + S + + +H + + L Sbjct: 377 ILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYL 435 Query: 128 GINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178 G K D A L +Q+ YAA D L + L R+ Sbjct: 436 GY---KTISYEDVAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKLYPMLDEPLRNV 492 Query: 179 LATSCCNFLMDRAELDLLG 197 L L A++++ G Sbjct: 493 LHDIEMPLLTVLADMEIHG 511 >gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] Length = 949 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 19/194 (9%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEK 74 ++ DTET GL P L + S G I ++ A L + Sbjct: 375 KQSSVCFDTETTGLDPLVAELVGIAFSWEAGKGYYIPFPESKEEAQALIEELRPFFENTA 434 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130 EKI ++DI VL +F T +A L +H + + L Sbjct: 435 IEKIGQNLKYDIKVLAKYNVKVKGKLFDTMLAHYLINP-DMRHNMDVLAETYLNYTPVSI 493 Query: 131 ---ISKA--QQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 I K Q S D+S D+Q +YA D L+ F ++L G L Sbjct: 494 TELIGKKGKNQKS---MRDVSVDDQTEYAVEDADITLQLKQHFEKELDEAGTRKLFDDIE 550 Query: 184 CNFLMDRAELDLLG 197 L A +++ G Sbjct: 551 IPLLRVLAAMEVEG 564 >gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510] gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510] Length = 972 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 66/189 (34%), Gaps = 40/189 (21%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--------AAGQKNAPN--- 65 AR +AVDTET L P L V LS G I + AAGQ + Sbjct: 378 ARETGRLAVDTETDSLTPATATLVGVSLSTEPGIACYIPLAHKAEGSAAAGQLDFDAPPP 437 Query: 66 ------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 L +L D KI H +FD + G+ V PV + + S + Sbjct: 438 PAQIPAAEAMAILKDVLEDPSVLKIGHNFKFDHQLFGRN-GITVSPVDDSMLISYVLEGG 496 Query: 114 TNQHGLKDNLK-----------ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 ++ HG+ + + E+ G K Q + D L L YAA D Sbjct: 497 SHGHGMDELAELHLAYTPIPFKEVCGTG--KNQITFD--RVPLDKA-LAYAAEDADITLR 551 Query: 163 LRLQFTEKL 171 L +L Sbjct: 552 LWTLLKPRL 560 >gi|317480691|ref|ZP_07939778.1| 3'-5' exonuclease [Bacteroides sp. 4_1_36] gi|316903198|gb|EFV25065.1| 3'-5' exonuclease [Bacteroides sp. 4_1_36] Length = 207 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 29/176 (16%) Query: 13 AECAARYVDAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAP 64 A + + +D+ET R ++ ++Q+S + + R+ P Sbjct: 36 AVAYLKSCPLLGIDSET------RPSFTKGQIHKVALLQISSEEHCF-LFRLNLTGLTLP 88 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----L 119 + +L + K+ R D +L + A + Y G L Sbjct: 89 VIT-LLENPSVTKVGLSLRDDFMMLHKRAPFE-------QHACIELQEYVRAFGIQDKSL 140 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + L G ISK+Q+ S+W A+ L++ Q YAA+D + + E L+R G Sbjct: 141 QKIYAILFGEKISKSQRLSNWEAETLTEPQKLYAATDAWACLNIYNRLQE-LKRTG 195 >gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1] gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1] Length = 930 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 353 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLQQATEYAAEDADVTMKLQQALWLKLQEE 522 >gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021] gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021] Length = 743 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 166 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 225 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 226 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 283 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 284 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 335 >gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319] gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319] Length = 920 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 78/206 (37%), Gaps = 18/206 (8%) Query: 7 HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-- 63 +E D+ C +++DTET L + S + + I ++ A Sbjct: 333 NEADLHRLCELFLTKKTLSLDTETTSTDAISAELVGLSFSVEEKEAYYVPIPENREEALK 392 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 + +E K+ ++D VL +F T IA L + +H + Sbjct: 393 RVAIFKPVYENESILKVGQNIKYDYEVLSNYGVKLKGAMFDTMIAHYLIQPEL-RHNMDY 451 Query: 122 NLKELLG---INI-----SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQ 172 + LLG I+I SK ++ + DLS + +YAA D L+ KL+ Sbjct: 452 MAETLLGYQTIHIEELLGSKGKKQKN--MRDLSPTDIYEYAAEDADITLRLKNVLAPKLK 509 Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197 L +L S + A+++L G Sbjct: 510 ELNVEELFWSIEMPLVRVLADMELTG 535 >gi|237721388|ref|ZP_04551869.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449184|gb|EEO54975.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 219 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 21/175 (12%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + I +D+E ++ ++Q+S + + R+ P LV Sbjct: 36 AVAYLQSRAVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVD 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L + K+ + D +L P T+ + + Y Q G L+ Sbjct: 92 LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L ISK+Q+ S+W AD LSD Q QYAA+D + ++L++ G + Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGDWE 198 >gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens] gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens] Length = 896 Score = 71.6 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 22/199 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68 +DTET L + L + L+ + I +A + L Sbjct: 317 LEQSQQFCIDTETTNLDVMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKP 376 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + KI ++D +VL G+ ++ + + T + S + + +H + + L Sbjct: 377 ILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYL 435 Query: 128 GINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178 G K D A L +Q+ YAA D L + L + R+ Sbjct: 436 GY---KTISYEDVAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKLYPMLDKPLRNV 492 Query: 179 LATSCCNFLMDRAELDLLG 197 L L A++++ G Sbjct: 493 LHDIEMPLLTVLADMEMHG 511 >gi|72388613|gb|AAZ67949.1| At5g24340 [Arabidopsis thaliana] gi|72388615|gb|AAZ67950.1| At5g24340 [Arabidopsis thaliana] gi|72388617|gb|AAZ67951.1| At5g24340 [Arabidopsis thaliana] gi|72388619|gb|AAZ67952.1| At5g24340 [Arabidopsis thaliana] Length = 163 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 29/56 (51%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L KE+L I++SK Q SDWS L++EQ YAA+D L + F L Sbjct: 29 SLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVE 84 >gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG] gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG] Length = 930 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 353 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522 >gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700] gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700] Length = 985 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGMLVD 72 IAVDTET GL L V + +G + + AP L +L + Sbjct: 411 IAVDTETDGLDYMSANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKSTALAALKPILEN 470 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 K+ +FD+ + G+ +R + F T + S + T +H + D K LG Sbjct: 471 PNIGKVGQNLKFDMTIFARN-GIELRGIEFDTMLLSYTLDS-TGRHNMDDLAKRYLGHQ- 527 Query: 132 SKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 D + L+ Q+ +YAA D L+ EKL+ Sbjct: 528 --TIGFEDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTMKLQQVLWEKLKSQ 577 >gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] Length = 924 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 22/182 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69 A +A+DTET L + L + LS G I I + L + Sbjct: 340 AEEAGELAIDTETSSLDAHQTDLVGISLSTKIGQACYIPIGHKFKGCLKKETVIKKLKPL 399 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK-ELLG 128 L D+ +KI +FD VL+ G+ + + T + S + N+H + + L Sbjct: 400 LEDKSVKKIGQNIKFDFIVLYKQ-GINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQH 458 Query: 129 INIS---------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 IS K SD +L +YAA D + L F++ L+ +++ Sbjct: 459 KTISFKEIVGTGKKEINFSD---VELDKAM-EYAAEDADITYRLYKIFSKNLKLEKLTNI 514 Query: 180 AT 181 Sbjct: 515 YE 516 >gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3] Length = 732 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 71/219 (32%), Gaps = 39/219 (17%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA-------- 57 AR +A DTET L + L + ++ D D + ++ Sbjct: 126 ADARDTGLVAFDTETTSLDAMQAELVGISMAIADNVADPSGTKIRAAYVPLSHKNGVGDL 185 Query: 58 ----------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 + P L +L DE K+ ++D +L +G+ + T + S Sbjct: 186 LGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETKSFDDTMLIS 244 Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159 + T HG+ ++ LG K S +++ D YAA D Sbjct: 245 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GRANVTFDLVDIDRATHYAAEDADV 302 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L L +L G + + L A ++ G Sbjct: 303 TLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 341 >gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735] gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735] Length = 920 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 25/198 (12%) Query: 18 RYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA----PNLVGML 70 R +++DTET L C + + + I ++ A + Sbjct: 345 RTKRILSLDTETTSTNAIDAELVGLC---FAVEEHKAFYVAIPNDREEALQYVNIFKPVY 401 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-- 128 D KI ++D VL +F T +A + + + H + + LL Sbjct: 402 EDPSILKIGQNLKYDYEVLKNYGVTLGGKMFDTMLAHYVIQPELH-HNMDYMAETLLHYK 460 Query: 129 -INISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 I+I + Q S DL + + +YAA D L+ KL+ G +L Sbjct: 461 TIHIDELIGPRGKHQKS---MRDLDPKDVYEYAAEDADITLQLKNVLEPKLKETGTENLF 517 Query: 181 TS-CCNFLMDRAELDLLG 197 + + A+++L G Sbjct: 518 WNIEMPLVPVLADMELNG 535 >gi|114619614|ref|XP_528104.2| PREDICTED: Werner syndrome ATP-dependent helicase [Pan troglodytes] Length = 1432 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + I++ L +L ++ +K I L F Sbjct: 96 KVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A++ + T L +K LLG + K+ + S+WS L+++Q Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210 Query: 151 QYAASD 156 YAA+D Sbjct: 211 LYAATD 216 >gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b] gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b] Length = 993 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 65/206 (31%), Gaps = 29/206 (14%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ E A +A+DTET L P L V L+ G I + Sbjct: 384 TVTTLERLDAWIAEAFAAGFVAMDTETTSLDPMSCDLVGVSLATAPGRACYIPLRHVASA 443 Query: 63 APNL--------------------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102 P+L +L KI ++D+ VL GV V P+ Sbjct: 444 GPDLLGGGEPPPAQIPFDDAIARLKPLLEARSVLKIAQNMKYDLLVLAC-CGVDVAPIED 502 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGIN-----ISKAQQSS--DWSADDLSDEQLQYAAS 155 T + S + N HGL + K+ LG S ++ L +YAA Sbjct: 503 TMLISYALDSGRNNHGLDELAKKHLGHECIPFAAVAGSGRSFIGFARVPLDKA-TEYAAE 561 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLAT 181 D L +L + + Sbjct: 562 DADVALRLWRVLKPRLAAEHMTSVYE 587 >gi|164656377|ref|XP_001729316.1| hypothetical protein MGL_3351 [Malassezia globosa CBS 7966] gi|159103207|gb|EDP42102.1| hypothetical protein MGL_3351 [Malassezia globosa CBS 7966] Length = 348 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 22/201 (10%) Query: 5 RVHEGDIPAECAARYV--DAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57 + + +P A + +D E +G + + QL+ + + +I ++ Sbjct: 109 HLVDKLLPPALAHTNTLGGIVGLDLEWNFGLRMG------KTAVAQLATAND-IFVIHLS 161 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQ 116 ++ LV ML D K R D++ L FG+ + ++IA +L N Sbjct: 162 QMKRLPDTLVAMLQDPHILKSGVAVRQDLSKLQRDFGIETCGALELSRIAWKLDPERWNG 221 Query: 117 ----HGLKDNLKELLGINISKAQQS-SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L+D LG +++K S W+ L++EQ+ YAASD L L Sbjct: 222 RRALISLRDLCAAYLGCDLAKGPTRTSSWTQVPLTNEQITYAASDAYVSLELAHAML--L 279 Query: 172 QRLGRSDLATSCCNFLMDRAE 192 + +++ L+ Sbjct: 280 DAHAKRPMSSEDAQKLLTEVS 300 >gi|306921707|dbj|BAJ17933.1| Werner syndrome, RecQ helicase-like [synthetic construct] Length = 1432 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + I++ L +L ++ +K I L F Sbjct: 96 KVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A++ + T L +K LLG + K+ + S+WS L+++Q Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210 Query: 151 QYAASD 156 YAA+D Sbjct: 211 LYAATD 216 >gi|281210039|gb|EFA84207.1| 3'-5' exonuclease domain-containing protein [Polysphondylium pallidum PN500] Length = 315 Score = 71.6 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 38/158 (24%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG--QKNAPNLVGMLVDEKREKIF 79 IA+D E L + ++ + +VQ+ G V + + Q L +L KI Sbjct: 156 VIAIDVEGLEMG-KQGEISLVQVGLMSGRVFLFDVLRLGQQLFDRGLRQILESNNILKIV 214 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H R D +L++ +H + + + QQ ++ Sbjct: 215 HDCRRDSEILYH------------------------RH------QRAVDLKYEARQQFTE 244 Query: 140 -----WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 W LS + Y+A D + LH + + +LQ Sbjct: 245 NPAEIWGKRPLSKLMIDYSALDAIVLHPIYNVISPQLQ 282 >gi|289671330|ref|ZP_06492405.1| ribonuclease D [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 72 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 2/73 (2%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 M H ++ A I +DTE + +L +VQ++ G+ + I + G Sbjct: 1 MPHWITHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60 Query: 61 KNAPNLVGMLVDE 73 A L L Sbjct: 61 NEA--LKEWLTPP 71 >gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20] gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20] gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] Length = 930 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 19/173 (10%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVG 68 IAVDTET L L + + +G + + +AP + Sbjct: 352 AAKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKP 411 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + KI +FD +F G+ ++ V F T + S + T +H + D K L Sbjct: 412 ILENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYL 469 Query: 128 GINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 G + + L+ Q+ +YAA D L+ KLQ Sbjct: 470 GHETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522 >gi|125987467|ref|XP_001357496.1| GA21642 [Drosophila pseudoobscura pseudoobscura] gi|54645828|gb|EAL34566.1| GA21642 [Drosophila pseudoobscura pseudoobscura] Length = 625 Score = 71.2 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 44/201 (21%) Query: 10 DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54 D+ +C + I +D+E + + +LC++Q++ I Sbjct: 402 DLADDCLITVDTATQFDLMLGHLQREHIIYMDSEWVQNVCGESQLCLLQIATVRNVYLID 461 Query: 55 RIAAGQKNAPNLVGM----LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI----- 105 +A A + + + K+ D+ VL + +++R ++ Sbjct: 462 CLARQSITADHWRALGADVFNNMNILKVGFSMYSDLTVLQRSLPLQLRL----QLSHHYL 517 Query: 106 --------------ASRLTRTYTNQHG--LKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 A RL N+ G L D LG ++K+ Q S+W+ L +Q Sbjct: 518 DLRTLWLELKKQRYAIRLPFGNVNRAGDALSDLSLVCLGKKLNKSNQCSNWANRPLRRDQ 577 Query: 150 LQYAASDVVHLHALRLQFTEK 170 + YAA D L + + Sbjct: 578 ILYAAIDARCLMLIYNTLLNR 598 >gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] Length = 915 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 17/196 (8%) Query: 2 TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 TI + + R AIA+D ET P RL + L+ + + Sbjct: 312 RTIVRFDNQLGDLLEELRSAPAIALDVETTSTDPMTARLVGIALATSGQRSFYVPVNHAN 371 Query: 61 KNA--------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 + L +L D H+G++D VL R R F T IA+ L Sbjct: 372 DDEQLDADEVREALSPLLADPNTVVYAHHGKYDALVLERAGYPRPRIAFDTMIAAYLLGE 431 Query: 113 YTNQHGLKDNLKELLGINISKAQQSS----DWSADDLSDEQL--QYAASDVVHLHALRLQ 166 N LK LG+ +++ + DL+D Q YA +DV + L Sbjct: 432 --NALDLKSLAFNRLGMEMTEITTLIGRGRNQLTMDLTDVQAAGDYACADVEATYRLVEV 489 Query: 167 FTEKLQRLGRSDLATS 182 L+ + L Sbjct: 490 LQPDLEAQQQERLFRE 505 >gi|72388593|gb|AAZ67939.1| At5g24340 [Arabidopsis thaliana] gi|72388595|gb|AAZ67940.1| At5g24340 [Arabidopsis thaliana] gi|72388597|gb|AAZ67941.1| At5g24340 [Arabidopsis thaliana] gi|72388599|gb|AAZ67942.1| At5g24340 [Arabidopsis thaliana] gi|72388601|gb|AAZ67943.1| At5g24340 [Arabidopsis thaliana] gi|72388603|gb|AAZ67944.1| At5g24340 [Arabidopsis thaliana] gi|72388609|gb|AAZ67947.1| At5g24340 [Arabidopsis thaliana] gi|72388611|gb|AAZ67948.1| At5g24340 [Arabidopsis thaliana] Length = 163 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 29/56 (51%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L KE+L I++SK Q SDWS L++EQ YAA+D L + F L Sbjct: 29 SLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVE 84 >gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] Length = 937 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 31/208 (14%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58 R + +A+DTET L R L + L G I + Sbjct: 347 RDLGHVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMP 406 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L +L DE KI ++D +L G+RV P+ T + S + HG Sbjct: 407 LGLALSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHG 465 Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + LG + + + + + YAA D L F +L Sbjct: 466 MDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQA-VCYAAEDADVTFRLWKLFKPQL 524 Query: 172 QRLGRSDLATSCCN--FLMDRAELDLLG 197 R R + AE+++ G Sbjct: 525 HRA-RVTTVYETLERPLVPVLAEMEMAG 551 >gi|72388605|gb|AAZ67945.1| At5g24340 [Arabidopsis thaliana] gi|72388607|gb|AAZ67946.1| At5g24340 [Arabidopsis thaliana] Length = 163 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 29/56 (51%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L KE+L I++SK Q SDWS L++EQ YAA+D L + F L Sbjct: 29 SLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVE 84 >gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131] gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131] Length = 937 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 31/208 (14%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58 R + +A+DTET L R L + L G I + Sbjct: 347 RDLGHVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMP 406 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L +L DE KI ++D +L G+RV P+ T + S + HG Sbjct: 407 LGLALSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHG 465 Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + LG + + + + + YAA D L F +L Sbjct: 466 MDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQA-VCYAAEDADVTFRLWKLFKPQL 524 Query: 172 QRLGRSDLATSCCN--FLMDRAELDLLG 197 R R + AE+++ G Sbjct: 525 HRA-RVTTVYETLERPLVPVLAEMEMAG 551 >gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] Length = 937 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 31/208 (14%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58 R + +A+DTET L R L + L G I + Sbjct: 347 RDLGHVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMP 406 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L +L DE KI ++D +L G+RV P+ T + S + HG Sbjct: 407 LGLALSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHG 465 Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + LG + + + + + YAA D L F +L Sbjct: 466 MDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQA-VCYAAEDADVTFRLWKLFKPQL 524 Query: 172 QRLGRSDLATSCCN--FLMDRAELDLLG 197 R R + AE+++ G Sbjct: 525 HRA-RVTTVYETLERPLVPVLAEMEMAG 551 >gi|291239803|ref|XP_002739809.1| PREDICTED: exonuclease 3-5 domain containing 2-like [Saccoglossus kowalevskii] Length = 682 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 21/150 (14%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFH 80 + +D E + + + + ++QLS D +I+I Q P L+ +L D+ K+ Sbjct: 167 VLGLDCEWVSVDGHPNPVSLLQLSTLDY-CYLIQIHRIQPMLPECLIDILQDKSILKVGV 225 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH----------GLKDNLKELLGIN 130 D L + + + VR RT+T +H L D E+LG Sbjct: 226 GIMEDAKKLLHDYKMLVRGCVD-------LRTFTFRHRPQLKRCITGSLADLSYEILGKE 278 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVV 158 + K+ + +W A D SD Q+ YAA D V Sbjct: 279 MDKSLDVRCGNWEAVDFSDVQISYAAEDAV 308 >gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302] gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302] Length = 920 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 25/198 (12%) Query: 18 RYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA----PNLVGML 70 R +++DTET L C + + + I ++ A + Sbjct: 345 RTKRILSLDTETTSTNAIDAELVGLC---FAVEEHKAFYVAIPNDREEALQYVNIFKPVY 401 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-- 128 D KI ++D VL +F T +A + + + H + + LL Sbjct: 402 EDPSILKIGQNLKYDYEVLKNYGVTLGGKMFDTMLAHYVIQPELH-HNMDYMAETLLHYK 460 Query: 129 -INISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 I+I + Q S DL + + +YAA D L+ KL+ G +L Sbjct: 461 TIHIDELIGPRGKHQKS---MRDLDPKDVYEYAAEDADITLQLKNVLEPKLKETGTENLF 517 Query: 181 TS-CCNFLMDRAELDLLG 197 + + A+++L G Sbjct: 518 WNIEMPLVPVLADMELNG 535 >gi|145550275|ref|XP_001460816.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124428647|emb|CAK93419.1| unnamed protein product [Paramecium tetraurelia] Length = 720 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 16/158 (10%) Query: 24 AVDTETLGLMPRRDR-----LCIVQLSPGDG--TVDIIRIAAGQKNAPNLVGMLVDEKRE 76 DTE D + I+Q+S + +DI + + L K Sbjct: 354 GFDTEF---CHYFDEFAIGGVAIMQISTENNVYIIDIFNLREKLELLQFLNNYFASNKI- 409 Query: 77 KIFHYGRFDIAVLFYTFG----VRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131 KI H D V+ V + + T + + + N L + + +L G + Sbjct: 410 KIGHSVWNDFTVMAQNMNLDQTVEPKNIVDLTFLYNEVFPENKNNVSLANQVYQLFGKKL 469 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 SK + S+W L QL Y A D AL L+ + Sbjct: 470 SKKECFSNWQRRPLRKCQLHYGAMDAYICIALYLKLNQ 507 >gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N] gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N] Length = 937 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 31/208 (14%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58 R + +A+DTET L R L + L G I + Sbjct: 347 RDLGHVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMP 406 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L +L DE KI ++D +L G+RV P+ T + S + HG Sbjct: 407 LGLALSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHG 465 Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + LG + + + + + YAA D L F +L Sbjct: 466 MDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQA-VCYAAEDADVTFRLWKLFKPQL 524 Query: 172 QRLGRSDLATSCCN--FLMDRAELDLLG 197 R R + AE+++ G Sbjct: 525 HRA-RVTTVYETLERPLVPVLAEMEMAG 551 >gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] Length = 896 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 22/199 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68 +DTET L + L + L+ + I +A + L Sbjct: 317 LEQSQQFCIDTETTNLDVMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTALKP 376 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + KI ++D +VL G+ ++ + + T + S + + +H + + L Sbjct: 377 ILENPAIGKIGQNIKYDYSVLKNY-GITLQGIRYDTMLESYVLNSGAGRHDMDSLALKYL 435 Query: 128 GINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178 G K D A L +Q+ YAA D L + L + R+ Sbjct: 436 GY---KTISYEDVAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKLYPMLDKPLRNV 492 Query: 179 LATSCCNFLMDRAELDLLG 197 L L A++++ G Sbjct: 493 LHDIEMPLLTVLADMEMHG 511 >gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068] gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068] Length = 966 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 71/201 (35%), Gaps = 25/201 (12%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----------APNLV 67 + ++ +DTET + PR + DG + I A + A Sbjct: 378 KAAGSLVIDTETTSVQPRWAEIVGYSFCYRDGEAWYLPIRAPENEQALCLDATAVADLFR 437 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ ++D+ VL + G+ +R F T +A L H L + + Sbjct: 438 PVLEDPAIAKVGQNIKYDMVVL-RSAGIELRGAAFDTMVADYLIDPGERSHNLDELARRH 496 Query: 127 LG---INIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 LG I I K Q D L YAA D + + L +L++ G Sbjct: 497 LGHQNIEIESLIGTGKKQIRMD--QVPL-AAITDYAAEDALVPYRLLPILEPRLEQDGLV 553 Query: 178 DLATS-CCNFLMDRAELDLLG 197 L + AEL+ G Sbjct: 554 PLFRDLEMPLVEVLAELEHRG 574 >gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris] gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris] Length = 896 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 22/199 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68 +DTET L + L + L+ + I +A + L Sbjct: 317 LEQSQQFCIDTETTNLDVMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTALKP 376 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + KI ++D +VL G+ ++ + + T + S + + +H + + L Sbjct: 377 ILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYL 435 Query: 128 GINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178 G K D A L +Q+ YAA D L + L + R+ Sbjct: 436 GY---KTISYEDVAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKLYPMLDKPLRNV 492 Query: 179 LATSCCNFLMDRAELDLLG 197 L L A++++ G Sbjct: 493 LHDIEMPLLTVLADMEMHG 511 >gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] Length = 927 Score = 71.2 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 61/188 (32%), Gaps = 16/188 (8%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T+ E R + A+DTET L P R RL + + G + + Sbjct: 331 TVTTVEQLQAWIATLRAAGSFALDTETDSLDPMRARLVGLSFAAEPGRAAYLPLGHDYPG 390 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 AP L +L D KI +G++D+ VL T + S + + Sbjct: 391 APAQLGYEQALDLLRPLLADPAVRKIGQHGKYDLHVLRRHGVAVAGYADDTLLESFVLDS 450 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQ 166 +H + LG K + + Q +YAA D L Sbjct: 451 GNARHDMDSLALRHLGYTTVKYEDICGKGVRQIPFSQCALDDATRYAAEDADITLRLHRV 510 Query: 167 FTEKLQRL 174 + +LQ Sbjct: 511 LSARLQAE 518 >gi|325068900|ref|ZP_08127573.1| 3'-5' exonuclease [Actinomyces oris K20] Length = 152 Score = 71.2 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGML 70 A+ A +AVD E ++QL G GT+ I + AG L L Sbjct: 59 AAQLLAAGRGPVAVDAERASGFRYGQDAYLIQLRRDGVGTLLIDPVTAGP--LTELATAL 116 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 E I H DI L G++ +F T++ +RL Sbjct: 117 DGP--EWILHAADQDIPCLTAR-GLKAASLFDTELXARL 152 >gi|145521320|ref|XP_001446515.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124413993|emb|CAK79118.1| unnamed protein product [Paramecium tetraurelia] Length = 513 Score = 71.2 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 15/178 (8%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL-------CIVQLSPGDGTVDII--R 55 ++ + + A +A+ D E + +L C+VQ++ + + Sbjct: 324 KIDQNYLDAWKCINQSNAVGYDCEHI---TPWTKLDYQGFKVCLVQIATSNHVFLFDYQK 380 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVFCTKIASRLTRT 112 + Q+ ++ +L + + KI + D+ + +R + ++ Sbjct: 381 LKEFQEFKNDVSQLLENVEILKIGLSLKDDLKHTVNYLKLNNIIIRSIIELSTCFKVLEG 440 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 L + +SK S+W L Q+ YAA D + + EK Sbjct: 441 DPKLRSLAYISEFYFKKKLSKYDTCSNWEYRPLRKAQIHYAALDAIASLQVFQTMKEK 498 >gi|72388621|gb|AAZ67953.1| At5g24340-like protein [Arabidopsis lyrata] Length = 163 Score = 71.2 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 29/56 (51%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L KE+L I++SK Q SDWS L++EQ YAA+D L + F L Sbjct: 29 SLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFKAHLVE 84 >gi|255086371|ref|XP_002509152.1| predicted protein [Micromonas sp. RCC299] gi|226524430|gb|ACO70410.1| predicted protein [Micromonas sp. RCC299] Length = 1227 Score = 71.2 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 + + R + +Q GL + LLG + K ++ DWS L++ Q+ Y A D L + Sbjct: 616 AAIDRGHGSQPGLSSVCQALLGQPLDKRERCGDWSRRPLTESQVAYGAQDARVLLRIMPG 675 Query: 167 F 167 Sbjct: 676 L 676 >gi|73979345|ref|XP_539984.2| PREDICTED: similar to Werner syndrome protein [Canis familiaris] Length = 1680 Score = 71.2 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 8/193 (4%) Query: 21 DAIAVDTETLGLMPRR--DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + D E + +R R+ ++QL + + I++ L +L +E +K Sbjct: 302 GVVGFDMEWPPVYTKRKPSRVALIQLCVSENKCYLFHISSMSVFPQGLKMLLENEAIKKA 361 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQ 135 + D L F + ++ T +A+ + T L +K L G + ++ Sbjct: 362 GVGIKGDQRKLLCDFDIDLKNFVELTDVANEKLKC-TETWSLNGLVKHLFGKQLLKDRSI 420 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 + S+W L+++Q YAA+D + + + R + L + L Sbjct: 421 RCSNWGDFPLTEDQKLYAATDAYAGLIIYQKLEILGNAVERFAINKKEEEILPIDVKKQL 480 Query: 196 LGWEN--VDIFSH 206 +D+ H Sbjct: 481 TSISEEMMDLAKH 493 >gi|167751882|ref|ZP_02424009.1| hypothetical protein ALIPUT_00124 [Alistipes putredinis DSM 17216] gi|167660123|gb|EDS04253.1| hypothetical protein ALIPUT_00124 [Alistipes putredinis DSM 17216] Length = 203 Score = 71.2 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 10/155 (6%) Query: 17 ARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 I DTET R R+ ++QLS + + + R+ + +V +L + Sbjct: 44 LAAQPVIGFDTET--RPSFRAGVVNRVALLQLSSPEQSF-LFRLCKIPLDK-AIVKILEN 99 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ KI + D+ L + + + + L+ +LG +S Sbjct: 100 KEILKIGADVKGDLRALHNIRHFQEAGFVDLQELAG--EWGIEEKSLRKLSAIVLGQRVS 157 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 KAQ+ S+W A L+D+Q YAA+D + + Sbjct: 158 KAQRLSNWEAAQLTDKQQFYAATDAWVCTRIYDRL 192 >gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3] gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3] Length = 916 Score = 71.2 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 71/177 (40%), Gaps = 18/177 (10%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------- 65 D IA+DTET L L + + G + ++ +AP Sbjct: 331 ATLSKADLIAIDTETTSLNYMEAELVGISFAVEAGKAAYLPLSHDYVDAPEQLDKALVFE 390 Query: 66 -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123 L +L +E +K+ ++DI++ G++++ V F T + S + + ++H + D Sbjct: 391 KLTPLLENEAIKKVGQNLKYDISIFANA-GIKLKGVQFDTMLESYVFNSVASKHNMDDLA 449 Query: 124 KELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + LG ++ + A L+ Q+ YAA D L +L++L Sbjct: 450 LKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKL 506 >gi|154303273|ref|XP_001552044.1| hypothetical protein BC1G_09385 [Botryotinia fuckeliana B05.10] gi|150854948|gb|EDN30140.1| hypothetical protein BC1G_09385 [Botryotinia fuckeliana B05.10] Length = 553 Score = 71.2 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 19/160 (11%) Query: 34 PRRDR--LCIVQLSPGD--GTVDII---RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI 86 + + ++QL+ + G I ++ A + AP L ++ D + K+ D Sbjct: 272 HHGPKKNVSLIQLATEERIGLFHIALFPQVNASELVAPTLKKIMEDPEVTKVGVAISADC 331 Query: 87 AVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKA--Q 135 L + +F RL + +Q L ++E L + + K Sbjct: 332 TRLRTHLNIDSVSIFELSHLHRLVKYTLSQEYDLINKRLVSLAKQVEEHLHLPLFKGGDV 391 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 ++SDWS LS +Q+ YAASD + L K Q L Sbjct: 392 RASDWS-RGLSIQQISYAASDSYAGYHLYDVLETKRQALN 430 >gi|281207669|gb|EFA81849.1| hypothetical protein PPL_05081 [Polysphondylium pallidum PN500] Length = 341 Score = 70.8 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 18/170 (10%) Query: 8 EGDIPAEC-AARYVDAIAVDTETLGLMPR----RDRLCIVQLSPGDGTVDIIRIAAGQKN 62 G +P++ + IAVD E GL + + ++Q++ G V I I Sbjct: 161 NGKLPSDIKESSKSPVIAVDCEWPGLRKFLVGEKATVSLIQMTNG--VVCRIGIPK---- 214 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L +L ++ K+ H D + GV + ++ T + R + + Sbjct: 215 --HLKELLTNDNILKVGHGISKDANKISDDLGVLMENIYDTNYHPIVLRMNSKKLAFA-- 270 Query: 123 LKELLGINI--SKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTE 169 + + G+NI SK+ S+W+ DL++ Q++ A+++V L +F + Sbjct: 271 VGKFFGVNILRSKSLSVSNWATSGDLTENQIEIASNEVYFARKLYFEFKD 320 >gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII] gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII] gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866] Length = 935 Score = 70.8 bits (173), Expect = 9e-11, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 19/173 (10%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVG 68 IAVDTET L L + + +G + + +AP + Sbjct: 357 AAKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKP 416 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + KI +FD +F G+ ++ V F T + S + T +H + D K L Sbjct: 417 ILENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYL 474 Query: 128 GINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 G + + L+ Q+ +YAA D L+ KLQ Sbjct: 475 GHETIAFESIAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 527 >gi|328872413|gb|EGG20780.1| 3'-5' exonuclease domain-containing protein [Dictyostelium fasciculatum] Length = 639 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 14/163 (8%) Query: 28 ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA 87 E+ G+ D++ ++Q++ D V +I+ + +L ++ D + K+ D Sbjct: 174 ESNGIKT-NDKVALIQIAFKDE-VFLIQCLRLKAIPKSLQLLMADHRILKVGVSIAQDAT 231 Query: 88 VLFYTFGVRVRPVFCTKIASRLTR----TYTNQHGLKDNLKELLGINISKAQ--QSSDWS 141 + G+ V+ L T + GL K +G+ I K+ + W Sbjct: 232 TIIKHLGIEVKGCVD------LVPLGNMTGFDGCGLAALAKSTMGVTIDKSHHIRCGHWE 285 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 ++ L+ +Q+ YAA D + +K ++++ + Sbjct: 286 SEQLTPDQIHYAACDAWIGREIFNVMYDKHVDTHKTEITPTEF 328 >gi|242087595|ref|XP_002439630.1| hypothetical protein SORBIDRAFT_09g017250 [Sorghum bicolor] gi|241944915|gb|EES18060.1| hypothetical protein SORBIDRAFT_09g017250 [Sorghum bicolor] Length = 562 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 19/172 (11%) Query: 8 EGDIPAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 G + A I +D E + ++ I+Q++ D I + ++ Sbjct: 362 NGLLSATSNIEACKIIGMDCEWRPNFEK-NTKPSKVSIIQIAS-DKVAFIFDLIKLYEDD 419 Query: 64 PN-----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY----T 114 P L ++ K K+ +DI + + C + L Sbjct: 420 PKTLDSCLRRIMCSSKILKL----GYDIQCDLHQLTQSYGELDCFQSYEMLLDMQKLFKG 475 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 GL KE+LG ++K++++S+W L+ Q +YAA D V L + + Sbjct: 476 VTGGLSGLSKEILGAGLNKSRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHE 527 >gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101] gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101] Length = 949 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 27/200 (13%) Query: 3 TIRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 + + +GD+ + + + ++ DTET G+ L + S G + Sbjct: 354 SYQTVQGDLGIKLLLQNLQKQTSVCFDTETTGIDALHAELVGMSFSYEKGKAFYVPFPES 413 Query: 60 QKNAPNLVG----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 Q+ A L+ +E EKI ++D+ +L +F T IA L Sbjct: 414 QEEAKVLIDKFVPFFENENIEKIGQNLKYDLKILSNYGVTVKGKLFDTMIAHYLINP-DM 472 Query: 116 QHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHA 162 +H + + L + I K + LS ++ +YAA D Sbjct: 473 RHNMDILAETYLKYSPKSIETLIGKK------GKNQLSMRDVPLEDIKEYAAEDADVTLQ 526 Query: 163 LRLQFTEKLQRLGRSDLATS 182 L+ FT +L++ L Sbjct: 527 LKEIFTAELEKTETKKLFDE 546 >gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2] gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2] Length = 891 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 23/200 (11%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA---PNL-------V 67 + D ++VDTET P +L + + I + +A P+L Sbjct: 310 KQADILSVDTETTSKHPMLAKLVGISFAVEPHRAYYIPVGHTGMDAKKQPDLSRVIALIR 369 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + + +K+ ++D VL G+R++ + F T IAS L H L +L Sbjct: 370 PLLENPEVKKVGQNIKYDYIVLTRH-GIRMQGLGFDTMIASHLLNPSQRGHSLDKIAMDL 428 Query: 127 LGINIS--KAQQSSDWSADDLS----DEQ--LQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L K S + + Q L YAA D +KLQ D Sbjct: 429 LDHKTIRYKEVTGS--GKTQIGFNEVEIQTALDYAAEDADITLLCHGILKQKLQESNLLD 486 Query: 179 LATS-CCNFLMDRAELDLLG 197 L + A++++ G Sbjct: 487 LMNQVEMPLITVLADMEMHG 506 >gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252] gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252] Length = 924 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 24/203 (11%) Query: 13 AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNL 66 E AR ++ +A+DTET +V ++ G G + G L Sbjct: 343 DELVARLDGLERLAIDTETTSTEAMWA--SLVGIAFSWEKGQGYYVPTPLPDGTPTETVL 400 Query: 67 VGM--LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + ++ + K+ ++D+ VL P F T +A L H L + Sbjct: 401 ERLAPILRRAQRKVGQNLKYDLVVLAQHGVEVPPPYFDTMVAHYLIAPE-EPHNLDVLAR 459 Query: 125 ELLGINI--------SKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLG 175 + L + S Q S D+S +++ YA D L +L R G Sbjct: 460 QYLRYQMVAITELIGSGRDQKS---MRDVSIDEVGPYACEDTDIALQLADVLAAELDRHG 516 Query: 176 RSDLATS-CCNFLMDRAELDLLG 197 +A + A+++ G Sbjct: 517 LRHIAEEMEFPLIEVLADMERTG 539 >gi|194681199|ref|XP_001788105.1| PREDICTED: CG9247-like [Bos taurus] Length = 788 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 28/56 (50%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 GL ++++LG + K QQ S+W L + QL YAA+D L + + R Sbjct: 622 GLSLLVQQVLGKPLDKTQQLSNWDRRPLGEGQLVYAAADAYCLLEVYWALCREPAR 677 >gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429] gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429] Length = 890 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 20/195 (10%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-------APNLVGMLVD 72 V ++DTET L P +L V +S +G I I+ +N L +L Sbjct: 317 VKTFSIDTETTSLDPFSAKLVGVSISTNEGEAYYIPISHVSENNLTKEIVLKFLKEILEC 376 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 E+ + +FD V G+ + P F T +A+ L ++ L++ + LG + Sbjct: 377 ERYNIVGQNLKFDYKVFMVN-GIEPQIPHFDTMVAAYLINPEERRYNLEELALKYLGYKM 435 Query: 132 SKAQQSSDWSADDLS---------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 ++ D + L ++ +Y+ DV L ++ + + Sbjct: 436 ISFEELVD-NNMPLFGNDFSFISIEKAAEYSCEDVDITFRLYSYLSKYIGEMKEL-FYNI 493 Query: 183 CCNFLMDRAELDLLG 197 + A+++L G Sbjct: 494 EMPLINVLAQMELNG 508 >gi|328770378|gb|EGF80420.1| hypothetical protein BATDEDRAFT_88588 [Batrachochytrium dendrobatidis JAM81] Length = 715 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 18/160 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAP--NLVGMLVDEKRE 76 I +D E DR+ I Q++ V I+ + L + ++ Sbjct: 553 IGIDAE--WYNQGSDRMSIFQIAVLLNDTSRRVYILDLFNLDLTETCNVLTALFSSKRIT 610 Query: 77 KIFHYGRFDIAVLFYTFG--VRVRPVFC-TKIASRLTRTYTNQH-------GLKDNLKEL 126 + G D+ L + K++ L +H GL D + + Sbjct: 611 TLGFDGVQDLKKLNALMPNLPLPYNLVDLNKLSMELFADKLKRHDIKKQQLGLSDLVLVV 670 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 L + K + +DW+ L QL YAASD L + + Sbjct: 671 LDKTLDKRVRLTDWNRRPLRQCQLTYAASDSDVLIDIYKK 710 >gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] Length = 885 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 22/193 (11%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---------AGQKNA-PNLVGML 70 +A DTET L ++ + + + +A G + A L + Sbjct: 321 SWVAFDTETNALDAYNAKIVGFSFALNEHEAYYVPLAHHYLGVGEQIGMEEAKEALKKLF 380 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGI 129 + + ++D+AV+ FG+R+ + T + + L +N GL K Sbjct: 381 KHK---IVGQNLKYDLAVIENNFGLRLSSSYADTMLMAWLLNPESN-VGLDTLAKRFFNH 436 Query: 130 NISK----AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 ++ K ++ ++S L +YA+ D L + + L+ ++A Sbjct: 437 DMVKFKDVVSKNENFSHVPLDKA-CEYASEDAWMTLKLYNKLHDMLEPR-LLEIAKEVEF 494 Query: 185 NFLMDRAELDLLG 197 F++ ++ G Sbjct: 495 PFILTLMRMEKEG 507 >gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518'] Length = 924 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 24/203 (11%) Query: 13 AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNL 66 E AR ++ +A+DTET +V ++ G G + G L Sbjct: 343 DELVARLDGLERLAIDTETTSTEAMWA--SLVGIAFSWEKGQGYYVPTPLPDGTPTETVL 400 Query: 67 VGM--LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + ++ + K+ ++D+ VL P F T +A L H L + Sbjct: 401 ERLAPILRRAQRKVGQNLKYDLVVLAQHGVEVPPPYFDTMVAHYLIAPE-EPHNLDVLAR 459 Query: 125 ELLGINI--------SKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLG 175 + L + S Q S D+S +++ YA D L +L R G Sbjct: 460 QYLRYQMVAITELIGSGRDQKS---MRDVSIDEVGPYACEDTDIALQLADVLAAELDRHG 516 Query: 176 RSDLATS-CCNFLMDRAELDLLG 197 +A + A+++ G Sbjct: 517 LRHIAEEMEFPLIEVLADMERTG 539 >gi|301166256|emb|CBW25831.1| putative 3'-5' exonuclease [Bacteriovorax marinus SJ] Length = 193 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 15/174 (8%) Query: 3 TIRVHEGDIPAECAARYVDA---IAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDII 54 I + D A A+ + + + DTET G D + ++QLS + + Sbjct: 23 NIHLITDDAEAIKIAKKLSSEEILGFDTETRPSFKKGEN--YD-VALLQLST-ENDAYLF 78 Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 R+ K LV +L DE K R DI L + + ++ Sbjct: 79 RLNK-MKLPNELVDLLADENIVKAGVAVRDDIKSLQKLNPFKEESFCELQDVAK--ELGV 135 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 GL+ L +SK + ++W L+ Q+ YAA D + + Sbjct: 136 KNFGLRALCAIFLNYRLSKRAKITNWEQPKLTQAQIHYAACDAWVGLQIYKKMQ 189 >gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245] gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245] Length = 943 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 22/177 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVD 72 D+ A+DTET L + L + S I G + L +L + Sbjct: 365 LEQADSFAIDTETTSLDTFQAELAGISFSLKPKEARFIYFGKGGLDIGNTLERLKPVLEN 424 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGI-- 129 K ++D+ VL G+ + PV F T +AS + +H L D L I Sbjct: 425 PDIRKTGQNLKYDLLVLKNY-GISLTPVAFDTMLASYVLDPE-EKHNLDDLAARHLSIRT 482 Query: 130 ----NISKAQQSSDWSADD----LSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRS 177 ++ + + QL Y D L+ F KL R Sbjct: 483 TTFDELTAGEGK----KRTHILDVPSAQLSDYGCQDADIALRLQEVFEAKLLEDQRL 535 >gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740] gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes] Length = 898 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 25/210 (11%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE-K 74 + +A DTET L R +L S + +A A + V + Sbjct: 324 SLTPSSVVAFDTETDSLETRSAKLVGFSFSLEGEVGYYVPVAHSYLGAGDQVSLEEARGA 383 Query: 75 REKIF------HYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELL 127 EKIF H +FD+ +L G + + + I + L + GL +K Sbjct: 384 IEKIFSAQVVGHNLKFDLEILHGALGFYPKGRIGDSMILAWLLDSGAP-VGLDFQMKRWF 442 Query: 128 GINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG---RS 177 G + K + + L + +YA D + + L + E+L++ G Sbjct: 443 GHEMIPFEKMVKKGETFA---QVALEEA-AEYAGEDALATYRLYFRLEEELKKRGCESLL 498 Query: 178 DLATS-CCNFLMDRAELDLLGWE-NVDIFS 205 LA S F+ E++ G + + F+ Sbjct: 499 GLAESLEFPFIHTLIEMEERGIRVDTEFFA 528 >gi|282860304|ref|ZP_06269373.1| 3'-5' exonuclease [Prevotella bivia JCVIHMP010] gi|282586901|gb|EFB92137.1| 3'-5' exonuclease [Prevotella bivia JCVIHMP010] Length = 225 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 19/190 (10%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 ++ EG A D + +DTET G+ ++ ++Q+S + Sbjct: 29 VKTAEGASAAVDYLLQSDILGIDTETRPSFKKGIRH---KVALLQVSTREVCFLFRLNII 85 Query: 59 GQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 G ++ ++ +L D KI H D +L + + + + Sbjct: 86 GITDS--IIRLLEDTSVPKIGLSLHD---DFRMLNKRVTFKPGYFIDLQ--DYVKDLGIH 138 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L+ + G I K +Q ++W +L+D+Q +YA++D L L+ ++L+ G Sbjct: 139 DLSLQKLYANVFGEKIVKREQLTNWENTELTDKQKRYASTDAWTCINLYLKM-KELKETG 197 Query: 176 RSDLATSCCN 185 L + Sbjct: 198 DYKLVENDLE 207 >gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127] gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127] Length = 930 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 353 AKLIAVDTETDSLDYISANLVGISFALENGEATYLPLQLDYLDAPKTLEKSTALAAIKPI 412 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522 >gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] Length = 929 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 74/226 (32%), Gaps = 49/226 (21%) Query: 13 AECAARYV--DAIAVDTETLGLMPRRDRLCIV----QLSPGDGT----VDIIRIAAGQKN 62 + AR +AVDTET L +V L+PG+ + A G + Sbjct: 328 EDWVARATAQGHVAVDTETDSLDSVSG--GLVGVSLALAPGEACYIPLAHVDPEAKGDGD 385 Query: 63 ---------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 L ML D KI ++D++V + V P+ T + S Sbjct: 386 MFGADPPRQIKMAEALKVLKPMLEDPAVLKIGQNIKYDLSVFAQH-KIHVHPIDDTMLIS 444 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSD---WSADDLSDEQL------QYAASDVV 158 + HG+ D + LG K D S Q+ +YAA D Sbjct: 445 FALNAGIHGHGMDDLSERYLGH---KPITFKDVAGTGKAQKSFAQVALDKATEYAAEDAD 501 Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFL-----MDRAELDLLGWE 199 L +L R++ T+ L AE++ G + Sbjct: 502 VTLRLWQALKPRL----RTEQVTAVYETLDRPLGPVLAEMEQAGVK 543 >gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] Length = 932 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 36/209 (17%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------AGQKN 62 +AVDTET GL R L V L G + +A GQ + Sbjct: 343 GVVAVDTETTGLNEMRADLVGVSLCVDPGRAAYLPLAHKDGGGADDLFGGEAKLAEGQLD 402 Query: 63 APN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L +L D KI ++D +L G+ V P+ T + S + HG Sbjct: 403 FETALGMLKPVLEDPAVLKIGQNMKYDAKILARN-GITVAPIDDTMLLSYALHAGLHGHG 461 Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK- 170 + + L + + + + + + +YAA D L + + Sbjct: 462 MDALSERYLDHTPIPIKTLLGTGKSAITFDFVPIEEA-TKYAAEDAEITLRLWQRLKPRL 520 Query: 171 -LQRLGR-SDLATSCCNFLMDRAELDLLG 197 L ++ R + + AE+++ G Sbjct: 521 HLAQVTRVYEWMERPM--VPVLAEMEMRG 547 >gi|119583828|gb|EAW63424.1| Werner syndrome, isoform CRA_a [Homo sapiens] Length = 1405 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + +++ L +L ++ +K I L F Sbjct: 96 KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A++ + T L +K LLG + K+ + S+WS L+++Q Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210 Query: 151 QYAASD 156 YAA+D Sbjct: 211 LYAATD 216 >gi|119583829|gb|EAW63425.1| Werner syndrome, isoform CRA_b [Homo sapiens] Length = 1436 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + +++ L +L ++ +K I L F Sbjct: 96 KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A++ + T L +K LLG + K+ + S+WS L+++Q Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210 Query: 151 QYAASD 156 YAA+D Sbjct: 211 LYAATD 216 >gi|119583830|gb|EAW63426.1| Werner syndrome, isoform CRA_c [Homo sapiens] Length = 1406 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + +++ L +L ++ +K I L F Sbjct: 96 KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A++ + T L +K LLG + K+ + S+WS L+++Q Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210 Query: 151 QYAASD 156 YAA+D Sbjct: 211 LYAATD 216 >gi|1280208|gb|AAC41981.1| unnamed protein product [Homo sapiens] gi|3719421|gb|AAC63361.1| WRN [Homo sapiens] gi|6272686|gb|AAF06162.1| WRN [Homo sapiens] gi|60461921|gb|AAX21098.1| Werner syndrome helicase [Homo sapiens] Length = 1432 Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + +++ L +L ++ +K I L F Sbjct: 96 KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A++ + T L +K LLG + K+ + S+WS L+++Q Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210 Query: 151 QYAASD 156 YAA+D Sbjct: 211 LYAATD 216 >gi|110735439|ref|NP_000544.2| Werner syndrome ATP-dependent helicase [Homo sapiens] gi|322510082|sp|Q14191|WRN_HUMAN RecName: Full=Werner syndrome ATP-dependent helicase; AltName: Full=DNA helicase, RecQ-like type 3; Short=RecQ3; AltName: Full=Exonuclease WRN; AltName: Full=RecQ protein-like 2 gi|37953299|gb|AAR05448.1| Werner syndrome [Homo sapiens] Length = 1432 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + +++ L +L ++ +K I L F Sbjct: 96 KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A++ + T L +K LLG + K+ + S+WS L+++Q Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210 Query: 151 QYAASD 156 YAA+D Sbjct: 211 LYAATD 216 >gi|189238221|ref|XP_970385.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum] Length = 336 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 47/170 (27%), Gaps = 40/170 (23%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + VD E + C+VQ+S D I IA L DE Sbjct: 144 DLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIA------------LKDE-- 188 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 H VF TK + GL L++ + K Sbjct: 189 ---LHALNE---------------VF-TKK-----SLGYKKLGLDALLQDY-HVAKDKTM 223 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 Q D+ L + YA D +L + +L CN Sbjct: 224 QRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCN 273 >gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846] Length = 930 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 353 AKLIAVDTETDSLDYISANLVGISFALENGEATYLPLQLDYLDAPKTLEKSTALAAIKPI 412 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522 >gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031] gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031] Length = 935 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + + D+ IAVDTET L L + + +G + + + Sbjct: 341 ILLTQADLTCWIEKLNAAKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLD 400 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 AP + +L + KI +FD +F G+ ++ V F T + S Sbjct: 401 APKTLEKSTALAAIKPILENPDIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLN 459 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + T +H + D K LG + + L+ Q+ +YAA D L+ Sbjct: 460 S-TGRHNMDDLAKRYLGHETIAFESIAGKGKGQLTFNQIPLEQATEYAAEDADVTMKLQQ 518 Query: 166 QFTEKLQRL 174 KLQ Sbjct: 519 ALWLKLQEE 527 >gi|189467792|ref|ZP_03016577.1| hypothetical protein BACINT_04184 [Bacteroides intestinalis DSM 17393] gi|189436056|gb|EDV05041.1| hypothetical protein BACINT_04184 [Bacteroides intestinalis DSM 17393] Length = 210 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 21/186 (11%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + +D+E ++ ++Q+S + R+ P ++ Sbjct: 36 AVTYLKQYPLLGIDSETRPSFTKGQSH--KVALLQVSSEKDCF-LFRLNLTGLTLP-IIS 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L K+ R D +L + A + Y G L+ Sbjct: 92 LLESPSVTKVGLSLRDDFMMLHKRAPFE-------QRACIELQEYVRMFGIQDKSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 L G ISK+Q+ S+W A+ L++ Q QYAA+D + + E L+ G +LA Sbjct: 145 GILFGEKISKSQRLSNWEAEHLTEPQKQYAATDAWACLNIYNRLQE-LKISGDYELAPDE 203 Query: 184 CNFLMD 189 ++ Sbjct: 204 TEEIIT 209 >gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 635 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 353 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522 >gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE] gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE] Length = 930 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 353 AKLIAVDTETDSLDYISANLVGISFALENGEATYLPLQLDYLDAPKTLEKSTALAAIKPI 412 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522 >gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 896 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 22/199 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68 +DTET L + L + L+ + I +A + L Sbjct: 317 LEQSQQFCIDTETTNLDVMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKP 376 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + KI ++D +VL G+ ++ + + T + S + + +H + + L Sbjct: 377 ILENPAIGKIGQNIKYDYSVLKNY-GITLKGIGYDTMLESYVLNSGAGRHDMDSLALKYL 435 Query: 128 GINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178 G K D A L +Q+ YAA D L + L R+ Sbjct: 436 GY---KTISYEDVAGKGAKQLRFDQIPVVKAGIYAAEDADITLRLHHKLYPMLDESLRNV 492 Query: 179 LATSCCNFLMDRAELDLLG 197 L L A++++ G Sbjct: 493 LHDIEIPLLTVLADMEMHG 511 >gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH] gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH] Length = 930 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 353 AKLIAVDTETDSLDYISANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 471 HETIAFESIAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522 >gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136] Length = 971 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 71/200 (35%), Gaps = 21/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-APNLVGM---LVD 72 VDA DTET GL P R+ + S I + L + L Sbjct: 391 LAGVDAFCFDTETDGLDPLSARMLGIAFSIAPHEGCYFHIPEERDEHLAVLKEVKTFLST 450 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---I 129 K EKI H +FD+ V P F T + L +HG+ + LG + Sbjct: 451 SKAEKIGHNLKFDLRVFLAHGIEVAGPFFDTMLVHALVEP-DQRHGMDYLSERYLGYSPV 509 Query: 130 NI------SKAQ--QSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +I K Q S A+ L + +YAA D L + +L+RLG + Sbjct: 510 SITTLIGEKKGATPQKS--MAEVPL-EPLAEYAAEDADVTLQLSQKLRPELERLGLMKVF 566 Query: 181 TS-CCNFLMDRAELDLLGWE 199 L A ++ G + Sbjct: 567 YEIEAPLLPVLAHMEHEGVK 586 >gi|299473101|emb|CBN77494.1| 3\'-5\' exonuclease family protein [Ectocarpus siliculosus] Length = 192 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 64/194 (32%), Gaps = 34/194 (17%) Query: 25 VDTET-----LGLMPRRDRLCIVQLS----PGDGTVDIIRIAA-------GQKNAPNLVG 68 +DTET +G ++Q++ G+ V +I + + + + L G Sbjct: 3 IDTETQPSFAVGE---WHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSG 59 Query: 69 MLVDEKREKI----------FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQ 116 K+ + + L GV TK+ Sbjct: 60 PFGSPNVVKLGVGLANDLDEMSFAFEETPFLEQVPGVLNLNALNTKLTGGACNDQGIPRD 119 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 GL+ LG ++SK QQ S W+ L Q+ YAA D + + L LG Sbjct: 120 LGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVFDAL---LLALGS 176 Query: 177 SDLATSCCNFLMDR 190 D+ C + R Sbjct: 177 LDVGELCTTWTPRR 190 >gi|282895827|ref|ZP_06303910.1| 3'-5' exonuclease [Raphidiopsis brookii D9] gi|281199215|gb|EFA74082.1| 3'-5' exonuclease [Raphidiopsis brookii D9] Length = 130 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 10/105 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS------PGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + +DTE RL ++Q+ G+ + A + ++V+ + Sbjct: 23 LWLDTEIANWNTPYPRLSLIQVLAYPSDLTGEFAYIFDVLDKPDLTAYFIQHIMVNSNIQ 82 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLK 120 K+FH FD+ L + + V CT K+A ++ R LK Sbjct: 83 KVFHNADFDLKYLGKN---QAQNVVCTFKLAKKINRKVLQTTNLK 124 >gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP] gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP] Length = 930 Score = 70.4 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 353 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 413 LENPDIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + + L+ Q+ +YAA D L+ KLQ+ Sbjct: 471 HETIAFESIAGKGKNQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQQE 522 >gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA] gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA] Length = 935 Score = 70.4 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 358 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKLI 417 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 418 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 475 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 476 HETIAFESLAGKGKSQLTFNQIPLQQATEYAAEDADVTMKLQQALWLKLQEE 527 >gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 923 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 19/187 (10%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E ++ A + IAVDTET L + L + + G + + AP Sbjct: 328 LTESELDAWLDKLSKAELIAVDTETTSLDYMQAELVGLSFAIEAGKAAYLPLGHDYPGAP 387 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 + L +L + +K+ ++D++VL G++++ V F T + S + + Sbjct: 388 SQLPREATLAKLKPLLENPDIKKVGQNLKYDMSVLANA-GIQLKGVAFDTMLESYVFNSV 446 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQF 167 ++H + + LG ++ + A L+ Q+ YAA D L Sbjct: 447 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIALEQAAPYAAEDADITLRLHQHL 506 Query: 168 TEKLQRL 174 +L + Sbjct: 507 WPRLSKE 513 >gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1] gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1] Length = 965 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 24/188 (12%) Query: 7 HEGDIPA-ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--AAGQKNA 63 ++ D+ A ++ A DTET G P RD L + L+ G+ + + G+ Sbjct: 363 NDADLEAIVTELKHASLFAFDTETRGTNPLRDDLVGIALATIPGSGWYVPLGHTTGEAQL 422 Query: 64 P------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116 P L D R +I H +FDI VL G+ V V F T +A+ L + Sbjct: 423 PRERVIAALRPFFADPARSRIAHNAKFDIEVLERA-GIPVAGVAFDTMLAAALLD---KR 478 Query: 117 HGLKDNLKELLGIN---------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 LKD L + I K + ++ ++ YAA+D L+ Sbjct: 479 RNLKDLAFYELNLAAPLESIEALIGKGKNQVTFADVPIARA-TPYAAADADMTLRLKPAL 537 Query: 168 TEKLQRLG 175 KL+ G Sbjct: 538 EAKLRAAG 545 >gi|313887168|ref|ZP_07820864.1| 3'-5' exonuclease [Porphyromonas asaccharolytica PR426713P-I] gi|332300419|ref|YP_004442340.1| 3'-5' exonuclease [Porphyromonas asaccharolytica DSM 20707] gi|312923397|gb|EFR34210.1| 3'-5' exonuclease [Porphyromonas asaccharolytica PR426713P-I] gi|332177482|gb|AEE13172.1| 3'-5' exonuclease [Porphyromonas asaccharolytica DSM 20707] Length = 206 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 9/163 (5%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 A A I +DTE+ + + +R + ++QLS + + RI P L G+ Sbjct: 33 SAVAALEQCAIIGMDTESKPVFKKYERQSVALIQLSS-ESCCYLFRINKIGI-PPRLQGL 90 Query: 70 LVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELL 127 L E K+ D L + + + RLT Y + GL+ L Sbjct: 91 LEREDILKVGLDLCGDRRQLRRFSPELHPQGFVDLQ---RLTPAYGIHDLGLQKIYAILF 147 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G ISK Q ++W A L+ Q YAA D + + + Sbjct: 148 GEKISKRAQLTNWEAATLTPAQQSYAALDAYACLRIYHRLESE 190 >gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402] Length = 944 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 24/173 (13%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM---------L 70 A D ET P +C L+ +G + + AP L+ L Sbjct: 370 AYDCETTSEDPLNAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAFKDAQRAVTKL 429 Query: 71 VDEKREKIFHYGRFDIAVLF--YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 D K I H G+FDI +F T IA+ L + +G+ + +LG Sbjct: 430 FDSKMTLIMHNGKFDIQAALSSKLASGISANLFDTMIAAWLLDPARSSYGMDKLAESILG 489 Query: 129 I------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + ++ K Q ++S L++ YAA D +F L++ Sbjct: 490 VKTIRFKDLVKTGQ--NFSDIPLNEA-CPYAAEDADITFRFYKKFLPLLKKNN 539 >gi|221503925|gb|EEE29602.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma gondii VEG] Length = 1048 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 47/194 (24%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREK 77 +A+D E +P ++ L+ + + L + + K Sbjct: 811 VVALDLE--WTLPHAA--SVLSLATESRVFLVDLVNDNPVYKATLLQMLRWLFANPFIAK 866 Query: 78 IFHYGRFDIAVLFYTFGVRVRP---VFCTKI--------ASRLTRTYT------------ 114 + + DI LF+ G P V C + A R R Sbjct: 867 LMYQASGDITKLFFALGAVGSPGALVHCIDLRKGRHLANAERELREGVIAKEHFLEKNEE 926 Query: 115 ------------NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 L++ +++L ++ K++Q S+W+ L+ Q YAA D L Sbjct: 927 ETPERYMRPVKRRFPSLQEMCRQVLHADLDKSEQRSNWNMRPLTASQAHYAALDAYVLI- 985 Query: 163 LRLQFTEKLQRLGR 176 L+R G Sbjct: 986 ---LLEAALRRQGW 996 >gi|237844623|ref|XP_002371609.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii ME49] gi|211969273|gb|EEB04469.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii ME49] Length = 1045 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 47/194 (24%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREK 77 +A+D E +P ++ L+ + + L + + K Sbjct: 808 VVALDLE--WTLPHAA--SVLSLATESRVFLVDLVNDNPVYKATLLQMLRWLFANPFIAK 863 Query: 78 IFHYGRFDIAVLFYTFGVRVRP---VFCTKI--------ASRLTRTYT------------ 114 + + DI LF+ G P V C + A R R Sbjct: 864 LMYQASGDITKLFFALGAVGSPGALVHCIDLRKGRHLANAERELREGVIAKEHFLEKNEE 923 Query: 115 ------------NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 L++ +++L ++ K++Q S+W+ L+ Q YAA D L Sbjct: 924 ETPERYMRPVKRRFPSLQEMCRQVLHADLDKSEQRSNWNMRPLTASQAHYAALDAYVLI- 982 Query: 163 LRLQFTEKLQRLGR 176 L+R G Sbjct: 983 ---LLEAALRRQGW 993 >gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236] gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236] Length = 932 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGMSFAVAPGEAAYLPLAHDYLDAPAQLDRNWVLATL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L +EK K+ +FD ++L G+ +R + F T + S + + +H + + Sbjct: 409 KPLLENEKALKVGQNLKFDQSMLARY-GIELRGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERTG 547 >gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] Length = 932 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 69/206 (33%), Gaps = 30/206 (14%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----------GQKNAPN---- 65 V +AVDTET GL L V LS G I + AP Sbjct: 344 VGYVAVDTETTGLDELTAELVGVSLSVEPGQACYIPLTHKASRSDDLFGSDDLAPGQMPF 403 Query: 66 ------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 L ML D KI ++D + G+ V P+ T + S + HG+ Sbjct: 404 EEALQLLTPMLEDPAILKIGQNMKYDGKIFAQ-LGITVAPIDDTMLMSYAMHAGLHGHGM 462 Query: 120 KDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + LG + + + + + D + YAA D L F +L Sbjct: 463 DTLSERYLGHTPLPIKPLLGSGKSAVTFDKVPMEDA-VPYAAEDADVTLRLWKLFKPQLH 521 Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197 R + + + + A+++ G Sbjct: 522 RAEVTKVYETLERPLVPVLAQMERAG 547 >gi|325297843|ref|YP_004257760.1| 3'-5' exonuclease [Bacteroides salanitronis DSM 18170] gi|324317396|gb|ADY35287.1| 3'-5' exonuclease [Bacteroides salanitronis DSM 18170] Length = 210 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 13/156 (8%) Query: 20 VDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + VDTE ++ ++Q++ D P+ + + Sbjct: 44 HSVVGVDTETRPSFKRGTVH--KVALLQIATHDTCFL---FRLNHLGLPDFLEEFLQNNV 98 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+ R D A+L R ++ + R + L+ L G ISK Sbjct: 99 LKVGLSLRDDFAMLRKRNQGDPRDGNWI--ELQDYVPRFGIEEKSLQKIYALLFGKKISK 156 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 Q+ S+W AD L++ Q YAA+D + E Sbjct: 157 TQRLSNWEADVLTEAQQLYAATDAWACVEIYTYLEE 192 >gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23] gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23] Length = 949 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET G P L + S + + + + Q A + +E Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132 K+ ++D+ VL P+F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494 Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL + + YA D L+ ++L+ Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADVTLKLKNVLEKELKE 539 >gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2] gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2] gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2] Length = 949 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET G P L + S + + + + Q A + +E Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132 K+ ++D+ VL P+F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494 Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL + + YA D L+ ++L+ Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADVTLKLKNVLEKELKE 539 >gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] Length = 946 Score = 70.0 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 72/212 (33%), Gaps = 24/212 (11%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + ++ A + A+AVDTET L + L + LS + G + Sbjct: 355 IVTRKEELQALVEQLNHAAALAVDTETTSLDTFQAELVGISLSIKPKQAWFVYFGKGGVD 414 Query: 63 ----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQH 117 L +L + K ++D+ VL G+ + PV F T +AS + +H Sbjct: 415 RRVALDMLKPVLENPSLRKTGQNLKYDLLVLKKY-GIDINPVAFDTMLASYVLDPEA-KH 472 Query: 118 GLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L D L I K D +LSD YA D L+ F Sbjct: 473 NLDDLALRHLSIKTTTYDELVADGKKKMSILDVPPGELSD----YACQDADLALRLQEVF 528 Query: 168 TEKLQRLGRSDLATS--CCNFLMDRAELDLLG 197 EKL + + A ++ G Sbjct: 529 KEKLLQEKDLLWLCENIEFPLVPVLATMEYHG 560 >gi|255015322|ref|ZP_05287448.1| hypothetical protein B2_15541 [Bacteroides sp. 2_1_7] Length = 193 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 55/171 (32%), Gaps = 21/171 (12%) Query: 8 EGDIPAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 E D E R+ + DTE ++ ++Q+S D G + Sbjct: 34 EADKAVEYLLRF-PIVGFDTETRPSFKKGQRY--KISLMQISTDDTCFLFRLNHIGIPES 90 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG----- 118 L L KI R D + + + Y Q G Sbjct: 91 --LEKFLKSSSTLKIGLSLRDDFGAIRKRSDIEPANFLD-------LQNYVGQFGIEDAS 141 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 L+ L ISK Q+ ++W AD L+D Q +YAA D + + Sbjct: 142 LQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALDAWACLRIYNLLNQ 192 >gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4] gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4] Length = 949 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET G P L + S + + + + Q A + +E Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132 K+ ++D+ VL P+F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494 Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL + + YA D L+ ++L+ Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADVTLKLKNVLEKELKE 539 >gi|195156982|ref|XP_002019375.1| GL12271 [Drosophila persimilis] gi|194115966|gb|EDW38009.1| GL12271 [Drosophila persimilis] Length = 578 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 8/166 (4%) Query: 18 RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + D E T+G RR + ++QLS G + R+ ++ +L +L DE Sbjct: 71 QSFKVVGFDCEWITVGG-SRRP-VALLQLSSHKGLCALFRLCTMRQIPKDLRDLLEDEAV 128 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ + D L + +GV V + + + GL K + + K Sbjct: 129 IKVGVAPQDDAKKLAHDYGVGVASTLDLRFLAVMAGHKPE--GLGKLAKTHVDFVLDKNW 186 Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + S+W A L Q+ YAA+D + A+ + + L+ D Sbjct: 187 RLACSNWEAKQLETSQIDYAANDALAAVAIFQKLSSDLEPRNFWDW 232 >gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2] gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2] Length = 938 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 69/209 (33%), Gaps = 32/209 (15%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------------AAGQK 61 R +AVDTET GL L + L G I + A GQ Sbjct: 343 RARGYVAVDTETTGLNEMIAELVGISLCVEAGQACYIPLTHKSAASDDLFGSDEMAEGQM 402 Query: 62 NAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + L +L D KI ++D + + V P+ T + S + H Sbjct: 403 DFDECLAMLKPVLQDPAVIKIGQNMKYDAKIFAR-LDIDVAPIDDTMLMSYAMNAGKHNH 461 Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G+ + LG + + + + + D ++YAA D L QF + Sbjct: 462 GMDTLSERYLGHTPIPIKPLLGSGKSAITFDRVPVDDA-VKYAAEDADITLRLWQQFKPQ 520 Query: 171 LQRLGRSDLATSCCN--FLMDRAELDLLG 197 L + R + A+++ G Sbjct: 521 LH-MNRVTTVYETMERPLVPVLAQMERHG 548 >gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 915 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 67/202 (33%), Gaps = 28/202 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG---------QKNAPNLV 67 A+DTET GL L + L+P G + + + L Sbjct: 338 LAGAGRFALDTETTGLDALSADLVGLSLAPAAGEGYYLPVGHSGVEGRQWTTDELKRYLG 397 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D KI H ++D+ +L G+ V + F T +A+ L + LK Sbjct: 398 PVLADVGIGKIAHNAKYDLHIL-AGAGLLVAGLDFDTMLAAHLLGE--SSLSLKGLAFNR 454 Query: 127 LGINI--------SKAQQS--SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LGI + Q S E YA +D L +L++ + Sbjct: 455 LGIEMTPITALIGEGRHQKCISTCGLR----ETADYACADADMTLRLYQLLLPELEKENQ 510 Query: 177 SDLATS-CCNFLMDRAELDLLG 197 S L + +++ G Sbjct: 511 SRLFDEVEMPLVPVIMDMEAAG 532 >gi|198454637|ref|XP_001359658.2| GA19827 [Drosophila pseudoobscura pseudoobscura] gi|198132885|gb|EAL28808.2| GA19827 [Drosophila pseudoobscura pseudoobscura] Length = 578 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 8/166 (4%) Query: 18 RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + D E T+G RR + ++QLS G + R+ ++ +L +L DE Sbjct: 71 QSFKVVGFDCEWITVGG-SRRP-VALLQLSSHKGLCALFRLCTMRQIPKDLRDLLEDEAV 128 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ + D L + +GV V + + + GL K + + K Sbjct: 129 IKVGVAPQDDAKKLAHDYGVGVASTLDLRFLAVMAGHKPE--GLGKLAKTHVDFVLDKNW 186 Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + S+W A L Q+ YAA+D + A+ + + L+ D Sbjct: 187 RLACSNWEAKQLETSQIDYAANDALAAVAIFQKLSSDLEPRNFWDW 232 >gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238] gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238] Length = 928 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 29/178 (16%) Query: 21 DAIAVDTETLGLMPRRDRL-----CIV--QLS---------PGDGTVDIIRIAAGQKNAP 64 +AVDTET L R L C++ Q D +A GQ + Sbjct: 341 GYVAVDTETTSLNEMRAELVGVSLCVMAGQACYIPLTHKGGAADDLFGDDALAEGQMDFE 400 Query: 65 N----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + L ML D+ KI ++D + G+ V P+ T + S N+H + Sbjct: 401 DCLAILKPMLEDDSILKIGQNMKYDAKIFKR-VGITVDPIDDTMLMSYAMNAGLNRHSMD 459 Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++ LG + + + + + + ++YAA D L +L Sbjct: 460 VLSEQYLGHTPIPIKPLLGAGKSAITFDRVPVEEA-VKYAAEDADITLRLWQVLKPQL 516 >gi|150007050|ref|YP_001301793.1| hypothetical protein BDI_0393 [Parabacteroides distasonis ATCC 8503] gi|256840209|ref|ZP_05545717.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262381047|ref|ZP_06074185.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298377471|ref|ZP_06987423.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19] gi|301311285|ref|ZP_07217213.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3] gi|149935474|gb|ABR42171.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] gi|256737481|gb|EEU50807.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262296224|gb|EEY84154.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298265490|gb|EFI07151.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19] gi|300830859|gb|EFK61501.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3] Length = 193 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 55/171 (32%), Gaps = 21/171 (12%) Query: 8 EGDIPAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 E D E R+ + DTE ++ ++Q+S D G + Sbjct: 34 EADKAVEYLLRF-PIVGFDTETRPSFKKGQRY--KISLMQISTDDTCFLFRLNHIGIPES 90 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG----- 118 L L KI R D + + + Y Q G Sbjct: 91 --LEKFLKSSSTLKIGLSLRDDFGAIRKRSDIEPANFLD-------LQNYVGQFGIEDAS 141 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 L+ L ISK Q+ ++W AD L+D Q +YAA D + + Sbjct: 142 LQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALDAWACLRIYNLLNQ 192 >gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] Length = 932 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 349 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD + +G+ ++ + F T + S + + +H + + Sbjct: 409 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERAG 547 >gi|329962096|ref|ZP_08300107.1| 3'-5' exonuclease [Bacteroides fluxus YIT 12057] gi|328530744|gb|EGF57602.1| 3'-5' exonuclease [Bacteroides fluxus YIT 12057] Length = 231 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 21/172 (12%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + +D+E ++ ++Q+S + + R+ P ++ Sbjct: 36 AVTYLKGCPLLGIDSETRPSFTKGHSH--KVALLQVSSEEHCF-LFRLNLTGLTLP-IIT 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123 +L K+ R D +L + A + Y G L+ Sbjct: 92 LLETPGVTKVGLSLRDDFMMLHKRAPFE-------QRACIELQEYVRTFGIQDKSLQKIY 144 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L G ISK+Q+ S+W AD LS+ Q YAA+D + + E L+R G Sbjct: 145 GILFGEKISKSQRLSNWEADVLSESQKLYAATDAWACLNIYNKLQE-LKRTG 195 >gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29] Length = 478 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 L IN+ K QQ S+WS L+ EQL YAA DV L L ++L + + T C Sbjct: 1 LKINLDKEQQKSNWSG-VLTQEQLIYAAKDVEVLCELDRILKDELCQYSLMEAFTLECKA 59 Query: 187 LMDRAEL 193 L A++ Sbjct: 60 LPAMAQM 66 >gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] Length = 949 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET G P L + S + + + + Q A + +E Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132 K+ ++D+ VL P+F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494 Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL + + YA D L+ ++L+ Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADVTLKLKNVLEKELKE 539 >gi|159478793|ref|XP_001697485.1| 3'-5' exonuclease [Chlamydomonas reinhardtii] gi|158274364|gb|EDP00147.1| 3'-5' exonuclease [Chlamydomonas reinhardtii] Length = 253 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 23/130 (17%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-------G 118 L +L + K+ + R D L++ GVR+ ++A R Y G Sbjct: 82 LQEVLECGRVTKLLYDVRCDAEALYHQHGVRLGGAVDLQLAEVAYRRYGPAMRRVGYVVG 141 Query: 119 LKDNLKELLGINISKAQQSS----------------DWSADDLSDEQLQYAASDVVHLHA 162 L L+ L + + +++ W L+ EQ++YA+ DV++LH Sbjct: 142 LARALETYLSPELRERWRATRVDKGALRDAYERDPGYWDRRPLTQEQVRYASDDVLYLHH 201 Query: 163 LRLQFTEKLQ 172 L QF LQ Sbjct: 202 LHAQFKAALQ 211 >gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035] gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035] Length = 934 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 33/201 (16%) Query: 5 RVHEGD---IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 VH D + A A R +A DTET L + L + L+ G I +A Sbjct: 327 YVHVSDRATLDAWIATIRAQGYVAFDTETTSLNEMQADLVGISLATAPGRACYIPVAHKD 386 Query: 61 KNAPNL--------------------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 A +L +L D+ KI ++D +L G+ V P+ Sbjct: 387 GAADDLFGSDARAEGQLPLDEVLNALKPVLEDDAILKIGQNMKYDAKILAAH-GITVAPI 445 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYA 153 T + S + HG+ + L + + + + + +++ ++YA Sbjct: 446 DDTMLMSYALHAGLHGHGMDTLSERYLNHSPIPIRSLLGSGKAAVTFDRVPVAEA-VKYA 504 Query: 154 ASDVVHLHALRLQFTEKLQRL 174 A D L L +L R Sbjct: 505 AEDADITLRLWLTLKPQLHRA 525 >gi|212692047|ref|ZP_03300175.1| hypothetical protein BACDOR_01542 [Bacteroides dorei DSM 17855] gi|212665439|gb|EEB26011.1| hypothetical protein BACDOR_01542 [Bacteroides dorei DSM 17855] Length = 216 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 14/177 (7%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + VDTE ++ ++Q+S D + PN + Sbjct: 37 AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPNSLQ 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + KI + D L V ++ + R L+ L Sbjct: 92 EFLMSDTLKIGLSLKDDFNSLRKRENVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ISK+Q+ S+W AD LS+ Q YAA+D + TE L+R G ++ Sbjct: 150 FDQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCLTE-LERTGDYEIKEEE 205 >gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] Length = 940 Score = 69.6 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 27/196 (13%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAP----NLVGMLVDEK 74 D A DTET G+ P + +V +S + + + A ++ A + L + K Sbjct: 367 DFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPAAREEADKILAHFSPALQNPK 424 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 KI +FDI V+ P+F T IA L +HG+ + L + I Sbjct: 425 SLKIGQNIKFDILVVRKYGIRIAGPLFDTMIAHYLLNPEL-RHGMDYLAETYLKYKTVRI 483 Query: 132 S--------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 K D+ Q+ +YAA D L+ FT L++ G L Sbjct: 484 EELIGPRERKQLTM-----RDVPVVQVAEYAAEDADITLKLKNYFTPCLEKEGLESLFYD 538 Query: 183 -CCNFLMDRAELDLLG 197 + AE++ G Sbjct: 539 IEMPLIYVLAEMEYTG 554 >gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3] gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3] Length = 932 Score = 69.6 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 74/200 (37%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 349 LKAAEVFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLEQL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D++VL G+ ++ + T +AS + + +H + Sbjct: 409 KPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIKHDTMLASYVFNSVGGKHDMDSLALR 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + L+ Q++ YAA D L + E +++ + Sbjct: 468 FLQHSCISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKA 527 Query: 180 ATSCCN--FLMDRAELDLLG 197 + + ++ G Sbjct: 528 IYEEIEVPLIPVMSRIERTG 547 >gi|224023974|ref|ZP_03642340.1| hypothetical protein BACCOPRO_00691 [Bacteroides coprophilus DSM 18228] gi|224017196|gb|EEF75208.1| hypothetical protein BACCOPRO_00691 [Bacteroides coprophilus DSM 18228] Length = 204 Score = 69.6 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 18/161 (11%) Query: 23 IAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + VDTET R +++ ++Q++ D P+ + + K+ Sbjct: 47 VGVDTET--RPSFRKGMVNQVALLQVATADACFL---FRLNHIGLPDFLEEFLQNDVLKV 101 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCT----KIASRLTRTYTNQHGLKDNLKELLGINISKA 134 + D +L R T ++ + + L+ L G ISK Sbjct: 102 GLSLKDDFRMLSRRNRQDPR----TGNWVELQDYVPHFGIEEMSLQKIYALLFGEKISKT 157 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 Q+ S+W A+ L++ Q YAA+D + E+L+R G Sbjct: 158 QRLSNWEAETLTEAQQLYAATDAWACVRIYEYL-EELRRTG 197 >gi|314122235|ref|NP_001186629.1| exonuclease 3'-5' domain-containing protein 2 [Gallus gallus] Length = 621 Score = 69.6 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 24/191 (12%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVDEKRE 76 + +D E + + + + + ++Q++ G ++R+ A+GQ L+ ++ D+ Sbjct: 105 PVLGMDCEWVSVEGKANPVSLLQMASASGLCVLVRLPRLVASGQPVPKTLLDIMADDAVL 164 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGINISKA 134 K+ D L + + V+ + + R N LK +++L + K+ Sbjct: 165 KVGVGCWEDACKLLQDYSLPVKGSVDLRYLAMRQRKDLLHNCLSLKSLAEKVLNCPLDKS 224 Query: 135 --QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD--R 190 + S+W A++L+ +Q+ YAA D AL L L + Sbjct: 225 PHMRCSNWEAEELTQDQVLYAARDAQVSVALFLHLLG--------------FACLPATSK 270 Query: 191 AELDLLGWENV 201 E + GWE V Sbjct: 271 GENSVSGWEKV 281 >gi|330789845|ref|XP_003283009.1| hypothetical protein DICPUDRAFT_146576 [Dictyostelium purpureum] gi|325087081|gb|EGC40462.1| hypothetical protein DICPUDRAFT_146576 [Dictyostelium purpureum] Length = 662 Score = 69.6 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 11/153 (7%) Query: 23 IAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 I D E ++ ++ ++QLS V +I+I+ +L +LVD + Sbjct: 172 IGFDAEWSNQNQYQECEGYPHKVALIQLSS-KTDVYLIQISQMPTIPQSLEQILVDPRLI 230 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ- 135 K+ D A +F +F + + RLT N GL +L NI K Sbjct: 231 KVGVAISQDAATIFSSFSIVTKGCVDLVPIGRLTNYQGN--GLASLALNVLNANIDKNNL 288 Query: 136 -QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + S W +L+ EQ+ YAA D + Sbjct: 289 IRCSHWENKNLTSEQVMYAAIDAWIGREIFETM 321 >gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] Length = 932 Score = 69.6 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 67/200 (33%), Gaps = 33/200 (16%) Query: 7 HEGDIPAECA----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAG 59 H D A A +AVDTET GL +L V L G I + A G Sbjct: 327 HVSDTAALQAWIDRIYEFGYVAVDTETTGLDDMVAQLVGVSLCVEPGKACYIPLIHKARG 386 Query: 60 QKNA-----------------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102 + L ML D KI ++D + G+ V P+ Sbjct: 387 SDDLFGSDDLAEGQIPTEEALRLLTPMLEDPSILKIGQNMKYDSKIFAQ-LGINVAPIDD 445 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAAS 155 T + S + HG+ + L + + + + L+D ++YAA Sbjct: 446 TMLLSYAMHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADA-VKYAAE 504 Query: 156 DVVHLHALRLQFTEKLQRLG 175 D L F +L R+G Sbjct: 505 DADITLRLWQLFKPQLHRVG 524 >gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] Length = 936 Score = 69.6 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 28/183 (15%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPN---------- 65 R +AVDTET GL L + L G I +A AG + Sbjct: 347 RERGRVAVDTETTGLDEMVVDLVGISLCVEAGEACYIPLAHKAGGDDLFGGEGLSEGQMP 406 Query: 66 -------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L +L D KI ++D +L GV V P+ T + S + HG Sbjct: 407 LEEAVAMLKDVLEDPAVLKIGQNMKYDAKILHRY-GVDVAPIDDTMLMSYALHAGLHGHG 465 Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + L + + + + + D + YAA D L F +L Sbjct: 466 MDTLSERYLDHTPIPIKPLLGSGKSAVTFDRVPIEDA-VPYAAEDADITLRLWQTFKPQL 524 Query: 172 QRL 174 + Sbjct: 525 HQE 527 >gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405] gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405] Length = 936 Score = 69.6 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 24/171 (14%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM---------LVD 72 D ET P +C L+ +G + + AP L+ L D Sbjct: 364 DCETTSEDPLNAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAFKDAKKAVTKLFD 423 Query: 73 EKREKIFHYGRFDIAVLF--YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI- 129 K I H G+FDI +F T IA+ L + +G+ + +LG+ Sbjct: 424 SKMTLIMHNGKFDIQAALSSKLASGISANLFDTMIAAWLLDPARSSYGMDKLAESILGVK 483 Query: 130 -----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 ++ K Q ++S L + YAA D +F L++ Sbjct: 484 TIRFKDLVKQGQ--NFSDIPLKEA-CPYAAEDADITFRFYKKFLPLLKKNN 531 >gi|321462436|gb|EFX73459.1| hypothetical protein DAPPUDRAFT_325251 [Daphnia pulex] Length = 417 Score = 69.6 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 6/156 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 V + D E + + ++QL+ G ++R+ +L +L + K K+ Sbjct: 36 VPILGFDCEWSNVDGNTQPIALIQLASHQGVCALVRVCCLSTLPESLKNILTNPKILKVG 95 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQS 137 D + L G++ + L + + L L G ++K + + Sbjct: 96 VATWEDASKLKRDLGIQFCGGYDV---RHLIFRHPKRVSLLSK-SGLSGTVLNKHFSVRC 151 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 SDW A++LS Q++YAA D + A+ L+ + + Sbjct: 152 SDWEAENLSTIQVKYAAQDAIASIAICLKLVAETRA 187 >gi|148909381|gb|ABR17789.1| unknown [Picea sitchensis] Length = 175 Score = 69.6 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 I D E + L RLCI+QL+ D + + G L K+ H Sbjct: 36 VIGFDCEGVDLARY-GRLCIMQLAFEDAVYLVDAVEGGHLLMQACKPALESVYVTKVVHD 94 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLK--ELLGIN-I 131 + D L++ +G+++ V T+IA L + L G++ Sbjct: 95 CKRDSEALYFQYGIKLNNVVDTQIAYPLIEEQEGRKWAPDEYISFVGLLADPRYCGVSYA 154 Query: 132 SKAQQSS 138 K + + Sbjct: 155 EKEEVRT 161 >gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] Length = 950 Score = 69.6 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 27/179 (15%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEK 74 + + A+DTET L L + +S I + +K L +L + Sbjct: 375 GLSSFALDTETTSLNTFEAELVGISISVKPQEAVFIYCSPEGLKPEKALSILKPVLENPA 434 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 EK ++DI VL G+++ P F T +AS + H L D + L Sbjct: 435 IEKWGQNLKYDILVLKNY-GIQLAPTGFDTMLASYVINPE-ETHNLDDLAQRHL------ 486 Query: 134 AQQSSDWS-------------ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 +++ +S L + YA D L+ ++L+ + Sbjct: 487 QYRTTTYSELCGTGKKAVPLRQVPL-EALKNYACQDADIALRLQNTLEKQLKDNQELEW 544 >gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909] gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909] Length = 932 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A ++P L Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGISFAVAPGEAAYLPLAHDYLDSPAQLDRDWVLATL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD ++L G+ +R + F T + S + + +H + + Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERTG 547 >gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] Length = 950 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 17/192 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVD 72 D+ +VDTET L L + S G + +A L +L + Sbjct: 373 LEQADSFSVDTETTSLDTFEAELAGISFSLEPGEAFFVYFGETGLDAKTTVAKLKPLLEN 432 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + K ++DI VL GV ++PV F T +AS + + +H L D L Sbjct: 433 PEIGKTGQNLKYDILVLKNY-GVELQPVEFDTMLASYVLDPES-RHNLDDMAALHLSRQT 490 Query: 132 SK-----AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATSC-- 183 K S ++ ++L YA D LR + KL+ +L C Sbjct: 491 VKYDELVGTGKSAIGIFEVEPQKLSDYACQDADITLKLRGELAAKLEAT--PELLEVCRT 548 Query: 184 CNFLMDRAELDL 195 F + R D+ Sbjct: 549 LEFPLVRVLADM 560 >gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48] gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48] Length = 953 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 71/212 (33%), Gaps = 40/212 (18%) Query: 18 RYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKN-------------- 62 R AVDTET L + V LS G+ I ++ + Sbjct: 356 RAAGVFAVDTETDSLSATASGLVG-VSLSCAPGSGVYIPLSHQSDDGGLALSGDEFKQIA 414 Query: 63 ----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L +L D K+ ++D++V G+RV P T + S + + HG Sbjct: 415 LVEALAELKPLLEDPTVLKVGQNIKYDLSVFARY-GIRVAPYDDTMLISYVLEGGLHGHG 473 Query: 119 LKDNLKELLGINI------------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 + + + LG +K+ + D L +YAA D L Sbjct: 474 MDELSELHLGHTPIPFKQVAGTGKSAKSFKFVD-----LKPA-TEYAAEDADITLRLWHV 527 Query: 167 FTEKLQRLGRSDLATSCCNFLMD-RAELDLLG 197 +L + + + + ++++L G Sbjct: 528 LKPQLAQKRLLTVYETLERAMPTVLSDMELAG 559 >gi|119601390|gb|EAW80984.1| exonuclease 3'-5' domain-like 2, isoform CRA_a [Homo sapiens] Length = 607 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 22/159 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72 + +D E + + G ++R+ G+ L+ +L D Sbjct: 99 LEDFPVLGIDCEWM--------------ASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 144 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130 K+ D + L +G+ VR + + R N LK + +L Sbjct: 145 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 204 Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K+ + S+W A+ L+++Q+ YAA D AL L Sbjct: 205 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 243 >gi|189217744|ref|NP_001121313.1| hypothetical protein LOC100158397 [Xenopus laevis] gi|115528351|gb|AAI24972.1| LOC100158397 protein [Xenopus laevis] Length = 499 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 8/150 (5%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREKIFHY 81 D E + + + + ++Q++ G ++R+ + L+ +L + K+ Sbjct: 2 DCEWVSVDGKASPVSLLQMASYSGFCVLVRLPQLTSSGCTIPKTLLELLANSGVLKVGVG 61 Query: 82 GRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYT-NQHGLKDNLKELLGINISKAQQ--S 137 R D + L +G+ V+ +A R R N LK + +L + K+ Q Sbjct: 62 CREDSSKLLNDYGLSVKGCVDIRYLAMRHRRDILQNTLSLKSLSETILSFPLDKSFQLRC 121 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQF 167 S+W A++ + Q+ YAA D AL L Sbjct: 122 SNWDAEEFTQNQVLYAARDAQVSVALFLHL 151 >gi|258648581|ref|ZP_05736050.1| 3'-5' exonuclease domain protein [Prevotella tannerae ATCC 51259] gi|260851360|gb|EEX71229.1| 3'-5' exonuclease domain protein [Prevotella tannerae ATCC 51259] Length = 201 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 19/164 (11%) Query: 20 VDAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 + + +DTET R ++ ++Q++ D + +++ AP+L+ +L Sbjct: 44 SEILGIDTET------RPSFRKGTIHKVALLQVANED-LCCLFQLSCFG-FAPDLIHLLS 95 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 ++ +K+ + D +L + + + L+ + I Sbjct: 96 NKAIKKVGLSLKDDFFMLSKRHKFDPQNCVDLQ--DYVKEMGIKDMSLQKLFANVFHQRI 153 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 SK+ Q S+W A + Q YAA+D L + ++L+ Sbjct: 154 SKSAQLSNWEAPIYTQSQKLYAATDAYACLKLYKEL-KRLKETN 196 >gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] Length = 949 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 22/170 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET G P L + S + + + A Q+ A + +E Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPADQEEALKIVNEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL GV+V+ P+F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLQNY-GVQVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLRYQTIHI 493 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL+ + + +YA D L+ ++L+ Sbjct: 494 DELIGPKGKNQK----NMRDLAPKDVYRYACEDADVTLKLKNVLEKELKE 539 >gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1] gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1] Length = 915 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 22/178 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 R A DTET GL ++ +L + + + +A + AP L Sbjct: 330 LRQAPLFAFDTETTGLDAQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLAL 389 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQHGLKDN 122 +L D + K+ ++DI +L G + + T + S + + +H + Sbjct: 390 KPLLEDPAKAKVGQNAKYDINILAN--GSPPIEMRGVAYDTMLESYVLNSTATRHDMDSL 447 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 ++ L + + A L+ Q+ YAA D L +L + Sbjct: 448 AQKYLDHTTIAFEDIAGKGAKQLTFNQITLDKAGPYAAEDADITLRLHHALQARLAQT 505 >gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953] gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953] gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] Length = 932 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 349 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD + +G+ ++ + F T + S + + +H + + Sbjct: 409 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERTG 547 >gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] Length = 932 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 349 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD + +G+ ++ + F T + S + + +H + + Sbjct: 409 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERTG 547 >gi|241121663|ref|XP_002403291.1| conserved hypothetical protein [Ixodes scapularis] gi|215493400|gb|EEC03041.1| conserved hypothetical protein [Ixodes scapularis] Length = 609 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 25/145 (17%) Query: 51 VDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 V I + + + L +L + EK+ H R L++ F V++ VF T++A Sbjct: 196 VFIFDVLTLKDTLFDKGLRQVLESKTIEKVIHGCRHLSDCLYHKFRVQLDNVFDTQVADL 255 Query: 109 L------------TRTYTNQHGLKDNLKELLGINIS--KAQQS---------SDWSADDL 145 R + G++ L+ L ++ K +S + W L Sbjct: 256 FIHYNRLGNDRGGCRLPSFVRGVQQCLRHFLHLSHDQLKYTRSRQNQPEGELTVWHQRPL 315 Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170 S QL DV L LR E+ Sbjct: 316 SLRQLDALVKDVAFLPELRRVCQEE 340 >gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501] gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501] Length = 931 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 24/178 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNL 66 + + A DTET L +R L V + G + + L Sbjct: 348 LKAAECFAFDTETTSLDAQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLSAL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + KI +G++D+ VL + G+ +R + F T + S + +H + + Sbjct: 408 KPLLEDPAKTKICQHGKYDMNVLMHY-GIEMRGMAFDTMLESYVLDATATRHDMDSLALK 466 Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 LG + D A L+ +Q+ YAA D L KL++ Sbjct: 467 YLGRG---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQTLLGKLEQT 521 >gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 963 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 30/216 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A+DTET GL + L + + G + + AP Sbjct: 374 LKKASLFAIDTETDGLDTKTAHLIGISFAVAPGKAAYLPLGHDYPEAPAQLNRDKVLALF 433 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + K+ +FD L +G++++ + F T + S + + +H + + Sbjct: 434 KPLLEDPQALKVGQNLKFD-QSLLANYGIKLQGIAFDTMLESYVFNSVAGRHDMDSLSER 492 Query: 126 LLGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL- 174 L K D ++ L + YAA D L L KL+ Sbjct: 493 HLNH---KTLSFEDIAGKGKNQLTFNQIPLEQAAI-YAAEDADVTLRLHLALWPKLKENP 548 Query: 175 GRSDLATS-CCNFLMDRAELDLLGWE-NVDI-FSHS 207 + L + ++ G + DI +HS Sbjct: 549 DLMKVLQEIEMPLLSVLSRMERTGVMIDPDILLNHS 584 >gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] Length = 930 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET G P L + S + + + A Q+ + +E Sbjct: 357 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPANQEETLKIVNEFRPVFENESS 416 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL GV V+ P+F T IA + + +HG+ + L I+I Sbjct: 417 LKVGQNIKYDMIVLQNY-GVEVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHI 474 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DL+ + + +YA D L+ ++L+ G L Sbjct: 475 DELIGPKGKNQK----NMRDLAPKDVYRYACEDADVTLKLKNVLEKELKENGTERLFYDI 530 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 531 EMPLVPVLVNIERNG 545 >gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602] gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602] Length = 934 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 351 LKGSEVFAFDTETDGLDTLTANLIGLSFATEAGKAAYLPVAHDYLDAPVQLDRDEVLKQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK+ K+ +FD VL + ++ + F T + S + + + +H + Sbjct: 411 KPILEDEKQLKVGQNLKFDRGVLLRY-DIELKGIAFDTMLESYVLDSVSGRHDMDSLADR 469 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 LG ++ + + L+ Q+ YAA D L ++ Sbjct: 470 YLGHKTVSFEEIAGKGKNQLTFNQIALEQAAPYAAEDADVTLQLHQALWPRIAE 523 >gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola] gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A] gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola] gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A] Length = 932 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 349 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD + +G+ ++ + F T + S + + +H + + Sbjct: 409 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERTG 547 >gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223] gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223] Length = 921 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 26/208 (12%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E ++ A A + D +AVDTET L L + + G + + AP Sbjct: 326 LTEAELDAWIAKLKQADLMAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAP 385 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L D K +K+ ++DI++L G++++ V F T + S + + Sbjct: 386 TQIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAFDTMLESYVFNSV 444 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167 ++H + + LG ++ + A L+ Q+ YAA D L Sbjct: 445 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHL 504 Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195 +L++ + + EL L Sbjct: 505 WPRLEKE-------AELAAMFTEVELPL 525 >gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10] gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua] gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516] gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92] gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516] gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003] gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10] gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516] gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua] gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92] gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516] gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004] gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003] gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 932 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 349 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD + +G+ ++ + F T + S + + +H + + Sbjct: 409 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERTG 547 >gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2] gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2] Length = 956 Score = 69.3 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 63/183 (34%), Gaps = 28/183 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL--CIVQLSPGDGTVDIIRIAAGQKNAPN--------- 65 + A DTET L L V +S I AP+ Sbjct: 374 LKAAGEFAFDTETTSLNYMNAELVGFAVAVSD---KAAYIPFGHNYPGAPDQIDKQLVID 430 Query: 66 -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123 +L D+ +KI ++D++VL G+ +R V F T + S + + +H + Sbjct: 431 KFKPLLEDDSLKKIGQNLKYDMSVLAEDAGITLRGVAFDTMLESYVLDSVATRHDMDSLA 490 Query: 124 KELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 + LG K +D A L+ Q+ YAA D L KL+ Sbjct: 491 LKYLGR---KTISFTDIAGKGAKQLTFNQIGLHEASPYAAEDADVTLRLHQTLWPKLEAE 547 Query: 175 GRS 177 R Sbjct: 548 DRL 550 >gi|313157179|gb|EFR56609.1| 3'-5' exonuclease [Alistipes sp. HGB5] Length = 203 Score = 69.3 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 64/172 (37%), Gaps = 17/172 (9%) Query: 4 IRVHEGDI-PAECAARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAA 58 I HE DI PA + DTET R R+ ++QLS + R+ Sbjct: 30 IIEHERDIVPACKFLMKQAVVGFDTET--RPSFRPGISYRVSLLQLSTP-QLCFLFRLNK 86 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTN 115 P L +L + KI D+ L R + IA Sbjct: 87 IPLAKPIL-QVLETDSILKI--GADVAGDLRSLRQIRHFRDGGFVDLQSIA---PEWGIE 140 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L+ +L +SKAQ+ S+W A L+D+Q YAA+D A+ + Sbjct: 141 DKSLRKLSAIVLRQRVSKAQRLSNWEAATLTDKQKLYAATDAWVCTAIYDKL 192 >gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] Length = 949 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET G P L + S + + + + Q A + +E Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDQDKALKIVNEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132 K+ ++D+ VL P+F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494 Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL + + YA D L+ ++L+ Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADVTLKLKNVLEKELKE 539 >gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] Length = 934 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 351 LKQAEVFAFDTETDGLDTLSANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRSWVLTTL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE+ K+ +FD L +G+ +R + F T + S + + +H + + Sbjct: 411 KPLLEDEQALKVGQNLKFD-KSLLARYGIELRGIAFDTMLESYVLNSVAGRHDMDSLSER 469 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ Sbjct: 470 YLNHKTITFEEIAGKGKNQLTFNQIALEQASPYAAEDADVTLQLHLAMWPKLQESEDLLR 529 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 530 VFQQIEMPLLPILSRIERTG 549 >gi|294886215|ref|XP_002771614.1| hypothetical protein Pmar_PMAR014646 [Perkinsus marinus ATCC 50983] gi|239875320|gb|EER03430.1| hypothetical protein Pmar_PMAR014646 [Perkinsus marinus ATCC 50983] Length = 463 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 44/203 (21%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKN 62 D+ A A+AVD GL RD +LC+ S +V ++ I + Sbjct: 263 SDLSEAAEAGEQAAMAVD--FEGLNLSRDGAMSLAQLCL---SSDPRSVYVVDITRLGFH 317 Query: 63 A--------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS---RLTR 111 A +L ++ D + EK+F+ R D+ L+Y F V + VF ++A R R Sbjct: 318 AFHATTHTGTSLKSIMEDSRIEKVFYDPRNDVDALYYQFNVAPQNVFDLQLAEVALRRAR 377 Query: 112 TYTNQ--HGL-KDNLKELLGI------------NISK-------AQQSSDWSADDLSDEQ 149 T + GL K ++ + + +I K ++ L Sbjct: 378 GLTVRYVIGLFKCLVQSEVFVQPGLREFAMWINDIGKALFEPKHGGSYKVFTERPLHPGI 437 Query: 150 LQYAASDVVHLHALRLQFTEKLQ 172 + YA+ DV +L L F + ++ Sbjct: 438 IVYASHDVRYLLPLYDAFHQAVE 460 >gi|115436116|ref|NP_001042816.1| Os01g0300000 [Oryza sativa Japonica Group] gi|14495214|dbj|BAB60933.1| unknown protein [Oryza sativa Japonica Group] gi|15623802|dbj|BAB67862.1| unknown protein [Oryza sativa Japonica Group] gi|113532347|dbj|BAF04730.1| Os01g0300000 [Oryza sativa Japonica Group] gi|125525536|gb|EAY73650.1| hypothetical protein OsI_01539 [Oryza sativa Indica Group] gi|125570051|gb|EAZ11566.1| hypothetical protein OsJ_01433 [Oryza sativa Japonica Group] gi|215686527|dbj|BAG88780.1| unnamed protein product [Oryza sativa Japonica Group] Length = 201 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 11/156 (7%) Query: 23 IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +D E + ++ ++QL G+ ++++ + P + +L D + Sbjct: 47 VGLDCEWKPNHVSWKT--SKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLV 104 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIAS--RL-TRTYTNQHGLKDNLKELLGINISK-- 133 D A L +GV + A RL + GLK +E+LG+ + K Sbjct: 105 GIGVGEDAAKLEADYGVWCAAPVDLEDACNRRLGLVGTGRRLGLKGYAREVLGMAMEKPR 164 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 S+W +L Q++YA D + L + Sbjct: 165 RVTMSNWEKRELDPAQVEYACIDAYVSYKLGERVLA 200 >gi|229442293|gb|AAI72837.1| Werner syndrome protein [synthetic construct] Length = 281 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + +++ L +L ++ +K I L F Sbjct: 96 KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A++ + T L +K LLG + K+ + S+WS L+++Q Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210 Query: 151 QYAASD 156 YAA+D Sbjct: 211 LYAATD 216 >gi|332228984|ref|XP_003263668.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 5 [Nomascus leucogenys] gi|332228986|ref|XP_003263669.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 6 [Nomascus leucogenys] gi|332228988|ref|XP_003263670.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 7 [Nomascus leucogenys] Length = 496 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 44 LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G ++R+ G+ L+ +L D K+ D + L +G+ VR Sbjct: 1 MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60 Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155 + + R N LK + +L + K+ + S+W+A+ L+++Q+ YAA Sbjct: 61 CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWNAETLTEDQVIYAAR 120 Query: 156 DVVHLHALRLQF 167 D AL L Sbjct: 121 DAQISVALFLHL 132 >gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] Length = 942 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 27/198 (13%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEK 74 + + DTET L P L + S + + G++ A L + Sbjct: 367 AQNRVCFDTETTSLDPLEAELVGIAFSWEAHKGFYLPVPEGREAAGEVLEELRPFFESDT 426 Query: 75 REKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130 EK+ ++DI VL G+ VR P+F T +A L +H + + L Sbjct: 427 IEKVGQNLKYDIKVLSTY-GIPVRGPLFDTMLAHYLINP-DMRHNMDVLAETYLNYTPVP 484 Query: 131 ----ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 I K + LS ++Q +YA D L F +L+ +L Sbjct: 485 ISDLIGKK------GKNQLSMRDVPLEDQTEYAVEDADITLQLAQLFGPELREAQTEELF 538 Query: 181 TS-CCNFLMDRAELDLLG 197 L A+++L G Sbjct: 539 KEIEIPLLRVLADMELEG 556 >gi|319945089|ref|ZP_08019351.1| 3'-5' exonuclease [Lautropia mirabilis ATCC 51599] gi|319741659|gb|EFV94084.1| 3'-5' exonuclease [Lautropia mirabilis ATCC 51599] Length = 228 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 12/159 (7%) Query: 19 YVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 + + DTE + +D +VQ + + + + A + G+L + Sbjct: 32 ALSVVGFDTESKPVFVRGQT-QDGPHLVQFASAE-RAWLFPLQDPAC-AQAVAGLLARPE 88 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFC---TKIASRLTRTYTNQHGLKDNLKELLGINI 131 K+ D A L FGV + + T A + + + Sbjct: 89 LLKVGFGLAGDRAQLLARFGVAPQGLVDLDQTYRALGYRASLGIRMAMAVTFGRYFEK-- 146 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 SK+ +SDWS LS Q +YAA D + + Sbjct: 147 SKSIGTSDWSRQPLSAAQCRYAAHDAWGAFRIYEALCAQ 185 >gi|294953661|ref|XP_002787875.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239902899|gb|EER19671.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 356 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 72/189 (38%), Gaps = 37/189 (19%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNA--------PNLVGMLVDEKREKIFHYGRFDIAV 88 +LC+ S +V ++ I +A +L ++ D EK+F+ R D+ Sbjct: 155 AQLCL---SSDPKSVYVVDITRLGFHAFHATTHTGTSLKSIMEDTLIEKVFYDPRHDVDA 211 Query: 89 LFYTFGVRVRPVFCTKIAS---RLTRTYTNQ--HGL-KDNLKELLGI------------N 130 L+Y F V + VF ++A R R T + GL K ++ + + + Sbjct: 212 LYYQFNVAPQNVFDLQLAEVALRRARGLTVRYVIGLFKCLVQSEVFVQPELRDFATRIND 271 Query: 131 ISK-------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 I K ++ L + YA+ D +L L FT++L+ G + Sbjct: 272 IGKALFEPKHGGSYKVFTERPLHPGIIVYASHDARYLLPLYDTFTKQLKCAG-DNWYNRV 330 Query: 184 CNFLMDRAE 192 RAE Sbjct: 331 LAASARRAE 339 >gi|332886278|gb|EGK06522.1| hypothetical protein HMPREF9456_00396 [Dysgonomonas mossii DSM 22836] Length = 197 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 10/158 (6%) Query: 17 ARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 +AI DTE + ++ ++QLS D T + R+ A L +LV+ Sbjct: 38 LSKCEAIGFDTETRPAFRKGVTH--QIALMQLSTID-TCFLFRLNLIGFPAC-LAELLVN 93 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +KI + D + + + ++ S + +GL+ L IS Sbjct: 94 PAVKKIGLSLKDDFSAIHKRMSLAPANF--VELQSFVKDYGIEDNGLQRIYGILFEKRIS 151 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K Q+ S+W D LSD Q YAA D + + K Sbjct: 152 KGQRLSNWEVDVLSDSQKMYAALDAWACLRIYNELKNK 189 >gi|160876618|ref|YP_001555934.1| 3'-5' exonuclease [Shewanella baltica OS195] gi|160862140|gb|ABX50674.1| 3'-5' exonuclease [Shewanella baltica OS195] gi|315268815|gb|ADT95668.1| 3'-5' exonuclease [Shewanella baltica OS678] Length = 315 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 12/143 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 + + DTET +R L ++Q++ D + + A + L +L Sbjct: 127 LQAEPVLGFDTET---RASFERGVQHPLSLIQIATAD-ACYLFQHAILGEQFTQLKTVLE 182 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 DE K+ R D L +G+ V A G + + LLG I Sbjct: 183 DENILKVGVGLRSDAQALKRQWGINVTSKLDLNWALAQLGAEKE-MGTRQLVATLLGTRI 241 Query: 132 SK--AQQSSDWSADDLSDEQLQY 152 K S+W LS Q+ Y Sbjct: 242 DKPKKITLSNWQHVPLSGAQIDY 264 >gi|321462442|gb|EFX73465.1| hypothetical protein DAPPUDRAFT_325261 [Daphnia pulex] Length = 474 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 6/156 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 V + D E + + ++QL+ G ++R+ +L +L + K K+ Sbjct: 36 VPILGFDCEWSNVDGNTQPVALIQLASHQGVCALVRVCCLSTLPESLKNILTNPKILKVG 95 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQS 137 D + L G++ + L + + L L G ++K + + Sbjct: 96 VATWEDASKLKRDLGIQFCGGYDV---RHLIFRHPKRVSLLSK-SGLSGTVLNKHFSVRC 151 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 SDW A++LS Q++YAA D + A+ L+ + + Sbjct: 152 SDWEAENLSTIQVKYAAQDAIASIAICLKLVAETRA 187 >gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22] gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A] gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22] Length = 949 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 20/169 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET G P L + S + + + + + A + +E Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132 K+ ++D+ VL V P+F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLQNYGAVVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494 Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL + + YA D L+ ++L+ Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADITLKLKNVLEKELKE 539 >gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42] gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CFN 42] Length = 999 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 71/219 (32%), Gaps = 39/219 (17%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA-------- 57 AAR IA DTET L + L ++ D D + +A Sbjct: 393 AAARDTGLIAFDTETTSLDAMQAELVGFAMAIADNVADPTGTKIRAAYVPLAHKDGVGDL 452 Query: 58 ----------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 + P L +L DE K+ ++D +L +GV + T + S Sbjct: 453 LGGGLAENQIPMRDALPRLKALLEDESVLKVAQNLKYD-YLLMKRYGVETKSFDDTMLIS 511 Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159 + T HG+ ++ LG K S +++ D YAA D Sbjct: 512 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GKANITFDLVDIDRATHYAAEDADV 569 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L L +L G + + L A ++ G Sbjct: 570 TLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 608 >gi|118404126|ref|NP_001016454.2| exonuclease 3'-5' domain containing 2 [Xenopus (Silurana) tropicalis] gi|116284125|gb|AAI24062.1| hypothetical protein LOC549208 [Xenopus (Silurana) tropicalis] Length = 612 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 8/155 (5%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKRE 76 + +D E + + + + ++Q++ G ++R+ + L+ +L + Sbjct: 109 PVLGMDCEWVSVDGKAGPVSLLQMASYSGFCVLVRLPQLTSSGCTIPKTLLELLANNSVL 168 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYT-NQHGLKDNLKELLGINISKA 134 K+ D + LF +G+ V+ +A R R N LK + +L + K+ Sbjct: 169 KVGVGCWEDSSKLFNDYGLSVKGCVDIRYLAMRHRRDILQNTLSLKSLSETILSFPLDKS 228 Query: 135 QQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 Q S+W A++ + +Q+ YAA D AL L Sbjct: 229 FQLRCSNWDAEEFTQDQVLYAARDAQVSVALFLHL 263 >gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166] Length = 914 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 24/178 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + + A DTET L +R L V + G + + P L Sbjct: 331 LKAAECFAFDTETTSLDAQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLGAL 390 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + KI +G++D+ VL + G+ +R + F T + S + +H + + Sbjct: 391 KPLLEDPAKTKICQHGKYDMNVLMHY-GIEMRGMAFDTMLESYVLDATATRHDMDSLALK 449 Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 LG + D A L+ +Q+ YAA D L KL++ Sbjct: 450 YLGRG---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQTLLGKLEQT 504 >gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] Length = 927 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 18/178 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R D IA DTET L L V + +G + +A +AP L Sbjct: 344 LRSADVIAFDTETDSLDYMEANLVGVSFAIEEGVAAYVPVAHDYMDAPKQLERDWVLEQL 403 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D R K+ ++D +VL G+ +R + F T +AS + + +H + Sbjct: 404 KPILEDGSRAKVGQNLKYDASVLARY-GIDMRGIKFDTMLASYVYNSVAGKHDMDSLALR 462 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177 L + +Q + L+ Q+ YAA D L + + L + Sbjct: 463 FLQHSCISFEQVAGKGKKQLTFNQIDLEQAAPYAAEDADVTFRLHQRLQKSLDASDKL 520 >gi|303286635|ref|XP_003062607.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456124|gb|EEH53426.1| predicted protein [Micromonas pusilla CCMP1545] Length = 720 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE----K 170 + GL + +LG + K+ + SDWSA L++ Q YAA D L + E + Sbjct: 654 DAVGLSHVARVVLGKPLDKSTRMSDWSARPLTERQRHYAALDAWVLVEVMRVLREEHGDE 713 Query: 171 LQRLGR 176 L RL R Sbjct: 714 LDRLSR 719 >gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] Length = 891 Score = 68.9 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 53/182 (29%), Gaps = 41/182 (22%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAGQKNAPNLVGMLVDE 73 I +DTET L P +L + L I + G L +L + Sbjct: 318 LSQQKEICLDTETTDLRPLEAQLVGIGLGVEPKKAWYIPLNGQLNGDFVLSQLKPLLENP 377 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL----- 127 H ++D VL + V + F T +AS L ++ QH L EL Sbjct: 378 SIGFYGHNFKYDYHVLRNH-NISVANISFDTILASYLLNSHKRQHSLDHLALELFDKVKI 436 Query: 128 ----------------GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + K Y DV + L+ +L Sbjct: 437 AIQELIGKGKNQLNMKNVALDKI---------------CHYCCEDVDYTIRLKNILLSQL 481 Query: 172 QR 173 + Sbjct: 482 EE 483 >gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] Length = 930 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 73/198 (36%), Gaps = 33/198 (16%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-----APNLVGMLVDEKR 75 + IA DTET G L V SP G + I + L +L Sbjct: 339 EYIAFDTETSGKNVMESDLVGVSFSPKAGIAYYVPINGFSDDGTKDLLDELSPLLE-GGP 397 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS-- 132 +KI H +FD L+ G+RV P+ F T IA+ L GLKD LGI ++ Sbjct: 398 KKIAHNAKFDYMALYKH-GIRVSPLYFDTSIAAFLLNE--TSVGLKDLAATRLGIQMTTI 454 Query: 133 -------KAQQ-----SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL- 179 K Q+ S D A YA +D L +++ DL Sbjct: 455 DSLIGKGKNQKTMLEVSVDECAR--------YACADADMTFRLFTMLEKEIVERKLQDLF 506 Query: 180 ATSCCNFLMDRAELDLLG 197 T + A++++ G Sbjct: 507 YTLEMPLVPVLADMEMTG 524 >gi|313220222|emb|CBY31081.1| unnamed protein product [Oikopleura dioica] Length = 597 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 50/180 (27%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 Y + + +D E +G + ++Q+S G I + L+ L DE Sbjct: 71 YCNFVGLDCEWVGKN----KTALMQISVSTPAGIKCFLIRLCKVDIRICYELMAFLRDED 126 Query: 75 REK------------------IFHYGR---FDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 K IFH FD+ +I + T Sbjct: 127 VVKLGCGIDGDFKRLSEVDFVIFHPATISFFDLR----------------QI---IPATN 167 Query: 114 TNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 GL + +++LG ++K + S+W AD LS+EQ YAA D V + + ++L Sbjct: 168 YQNGGLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAVCALQILGKLIQEL 227 >gi|288802306|ref|ZP_06407746.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18] gi|288335273|gb|EFC73708.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18] Length = 224 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 13/165 (7%) Query: 21 DAIAVDTETLGLMP-----RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 D I +DTET P +R ++ ++Q + G + + L D Sbjct: 46 DIIGIDTET---RPVFKKGQRRKVALLQACDREVCFLFRLNLIGVPDC--IKRFLEDTTV 100 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ D+ +L + + + L+ + I+K + Sbjct: 101 PKVGLSLGDDMLMLHQRLDFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFQERITKRE 158 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 Q S+W + LSD+Q YA++D L + E L+ G +L Sbjct: 159 QLSNWENEILSDKQKIYASTDAWTCIKLYERLHE-LKHSGNYELV 202 >gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1] gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1] Length = 932 Score = 68.9 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + IA DTET L L + + +G + +A AP L Sbjct: 349 LKSAPVIAFDTETDSLDYMVANLVGLSFAIEEGVAAYVPVAHDYIGAPEQLDRQWVLEQL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ K+ ++D +VL + ++ + F T +AS + + +H + Sbjct: 409 KPLLEDDAIAKVGQNLKYDASVLARY-DIELKGIKFDTMLASYVYNSVGGKHDMDSLALR 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + +Q + L+ Q+ YAA D L + +L++ Sbjct: 468 FLQHSCISFEQIAGKGKAQLTFNQIDLEQASPYAAEDADVTFRLHQRLNAELEK 521 >gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] Length = 942 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 61/215 (28%), Gaps = 46/215 (21%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA------------ 63 AA A D ET GL P L L+ I + Sbjct: 359 AAIAQGFAAFDCETTGLNPLEAELAGFSLALKAEEAFYIPVKLPPPELQSQAPQPMPLEK 418 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYT--FGVRVRPVFCTKIASRLT--------- 110 L + + I H G+FD + F +F T IA+ L Sbjct: 419 AVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPCAIFDTMIAAWLLDPDRTSFSL 478 Query: 111 ------RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ-LQYAASDVVHLHAL 163 KD + K + SD + EQ + YAA D Sbjct: 479 DSLASSLLKLQTIAYKDVV--------PKGKIFSD-----VPYEQAVAYAAEDADITLQF 525 Query: 164 RLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 KL+ G DL + L AE+++ G Sbjct: 526 YEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAG 560 >gi|237708989|ref|ZP_04539470.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229457051|gb|EEO62772.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 221 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 14/177 (7%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + VDTE ++ ++Q+S D + P+ + Sbjct: 42 AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 96 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + KI + D L V ++ + R L+ L Sbjct: 97 EFLMSDTLKIGLSLKDDFNSLRKRENVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 154 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ISK+Q+ S+W AD LS+ Q YAA+D + TE L+R G ++ Sbjct: 155 FDQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCLTE-LERTGDYEIKEEE 210 >gi|239814703|ref|YP_002943613.1| 3'-5' exonuclease [Variovorax paradoxus S110] gi|239801280|gb|ACS18347.1| 3'-5' exonuclease [Variovorax paradoxus S110] Length = 203 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 7/130 (5%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 +VQ + + + ++ + N P + ++ + K+ D+ ++ + + V Sbjct: 74 VVQFATREM-AWLFQLHRTECN-PVVATLIASTELRKVGFGLSTDLTLIRNRLNIEPKAV 131 Query: 101 FCTKIASRLT-RTYTNQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAASDV 157 F I S R Y G+K + + K+ +S+W+ L++ Q++YAA+D Sbjct: 132 FD--IDSEFRHRGYRKSVGVKAAVALVFNQRFVKSRKATTSNWANRQLTEAQMRYAANDA 189 Query: 158 VHLHALRLQF 167 + Sbjct: 190 YASIRVFDAL 199 >gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] Length = 930 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 353 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 413 LENPNSHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522 >gi|313234915|emb|CBY24860.1| unnamed protein product [Oikopleura dioica] Length = 812 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 50/180 (27%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 Y + + +D E +G + ++Q+S G I + L+ L DE Sbjct: 99 YCNYVGLDCEWVGKN----KTALMQISVSTPAGIKCFLIRLCKVDIRICYELMAFLRDED 154 Query: 75 REK------------------IFHYGR---FDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 K IFH FD+ +I + T Sbjct: 155 VVKLGCGIDGDFKRLSEVDFVIFHPATISFFDLR----------------QI---IPATN 195 Query: 114 TNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 GL + +++LG ++K + S+W AD LS+EQ YAA D V + + ++L Sbjct: 196 YQNGGLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAVCALQILGKLIQEL 255 >gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345] gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345] Length = 918 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + IA+DTET L +L + + G + + +AP L Sbjct: 335 LTAAELIAIDTETTSLNYMEAKLVGISFAVEAGKAAYLPLEHDYVDAPEQLDRALVFEKL 394 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE +K+ ++DI++ G+ +R V F T + S + + ++H + D + Sbjct: 395 QPLLEDENLKKVGQNLKYDISIFAN-IGITLRGVQFDTMLESYVFNSVASKHNMDDLALK 453 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG ++ + L+ Q+ YAA D L +L++L Sbjct: 454 YLGHKNISFEEIAGKGVKQLTFNQIPLETAAPYAAEDADITLRLHQHLWSRLEKL 508 >gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047] gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047] Length = 610 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 IAVDTET L L + + +G + + +AP + + Sbjct: 33 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 92 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + KI +FD +F G+ ++ V F T + S + T +H + D K LG Sbjct: 93 LENPNSHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 150 Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 + + L+ Q+ +YAA D L+ KLQ Sbjct: 151 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 202 >gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183] gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175] gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183] gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175] Length = 921 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 75/187 (40%), Gaps = 19/187 (10%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E ++ A A + D +AVDTET L L + + G + + AP Sbjct: 326 LTEAELDAWIAKLKQADLMAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAP 385 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L D K +K+ ++DI++L G++++ V F T + S + + Sbjct: 386 TQIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAFDTMLESYVFNSV 444 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167 ++H + + LG ++ + A L+ Q+ YAA D L Sbjct: 445 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHL 504 Query: 168 TEKLQRL 174 +L++ Sbjct: 505 WPRLEKE 511 >gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038] Length = 750 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 167 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 226 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD + +G+ ++ + F T + S + + +H + + Sbjct: 227 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 285 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 286 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 345 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 346 VFQEIEMPLLPILSRIERTG 365 >gi|293354272|ref|XP_002728460.1| PREDICTED: Werner syndrome protein [Rattus norvegicus] Length = 1389 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 12/140 (8%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ K I L Sbjct: 138 RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIRK----AGVGIEGDQWKLLR 193 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+R + L +K +LG + K+ + S+WS LS++ Sbjct: 194 DFDVKLESFVELTDVANRKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSDFPLSED 252 Query: 149 QLQYAASDVVHLHALRLQFT 168 Q YAA+D + + Sbjct: 253 QKLYAATDAYAGLIIYQKLE 272 >gi|237724671|ref|ZP_04555152.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265755584|ref|ZP_06090205.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229436866|gb|EEO46943.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|263234190|gb|EEZ19783.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 216 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 14/177 (7%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + VDTE ++ ++Q+S D + P+ + Sbjct: 37 AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + KI + D L V ++ + R L+ L Sbjct: 92 EFLMSDTLKIGLSLKDDFNSLRKRENVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ISK+Q+ S+W AD LS+ Q YAA+D + TE L+R G ++ Sbjct: 150 FDQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCLTE-LERTGDYEIKEEE 205 >gi|224824622|ref|ZP_03697729.1| 3'-5' exonuclease [Lutiella nitroferrum 2002] gi|224603115|gb|EEG09291.1| 3'-5' exonuclease [Lutiella nitroferrum 2002] Length = 222 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 20/164 (12%) Query: 22 AIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + DTE G +VQL+ + + + L +L Sbjct: 69 VLGFDTESRPTFHKGETSSGPH--LVQLATATH-AYLFPVERLA-DLTRLRMILESPAIR 124 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--HGLKDNLKELLGI--NIS 132 K+ D+ L G+ + RL R G + L G S Sbjct: 125 KVGFELGSDVQRLRAKLGIECAALVDI---GRLFRQPGEHRTVGAVQAVARLFGQCFRKS 181 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K Q +S+W++ LS+ Q YA +D + +L+R GR Sbjct: 182 KRQSTSNWASPVLSEAQCVYAGNDAYVALQVYH----ELERQGR 221 >gi|293342482|ref|XP_002725246.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog isoform 2 [Rattus norvegicus] gi|149057893|gb|EDM09136.1| rCG43045, isoform CRA_b [Rattus norvegicus] Length = 1335 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 12/140 (8%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ K I L Sbjct: 88 RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIRK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+R + L +K +LG + K+ + S+WS LS++ Sbjct: 144 DFDVKLESFVELTDVANRKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSDFPLSED 202 Query: 149 QLQYAASDVVHLHALRLQFT 168 Q YAA+D + + Sbjct: 203 QKLYAATDAYAGLIIYQKLE 222 >gi|109504268|ref|XP_001059940.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog isoform 1 [Rattus norvegicus] Length = 1400 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 12/140 (8%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ K I L Sbjct: 88 RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIRK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+R + L +K +LG + K+ + S+WS LS++ Sbjct: 144 DFDVKLESFVELTDVANRKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSDFPLSED 202 Query: 149 QLQYAASDVVHLHALRLQFT 168 Q YAA+D + + Sbjct: 203 QKLYAATDAYAGLIIYQKLE 222 >gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155] gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155] Length = 921 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 26/208 (12%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E ++ A A + D +AVDTET L L + + G + + AP Sbjct: 326 LTEAELDAWIAKLKEADLMAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAP 385 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L D K +K+ ++DI++L G++++ V F T + S + + Sbjct: 386 TQINKTVALEKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAFDTMLESYVFNSV 444 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167 ++H + + LG ++ + A L+ Q+ YAA D L Sbjct: 445 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHL 504 Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195 +L++ + + EL L Sbjct: 505 WPRLEKE-------AELAAMFTEVELPL 525 >gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568] gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568] Length = 934 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + D E + + A DTET GL L + + G + +A Sbjct: 336 VTILDEDTFTEWLEKLKKAEVFAFDTETDGLDTLTANLIGLSFAIAPGEAAYLPVAHDYL 395 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP L +L DEK K+ +FD+++L + +R + F T + S + Sbjct: 396 DAPTQLDRAHVLATLKPLLEDEKALKVGQNLKFDMSLLARY-DITLRGIAFDTMLESYVL 454 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALR 164 + +H + LG ++ + L+ Q+ YAA D L Sbjct: 455 DSVGGRHDMDSLSDRYLGHKTVTFEEIAGKGKKQLTFNQIALEQAAPYAAEDADVTLQLH 514 Query: 165 LQFTEKLQR 173 L +L+ Sbjct: 515 LAMWPQLKE 523 >gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195] gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195] gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678] Length = 921 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 26/208 (12%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E ++ A A + D +AVDTET L L + + G + + AP Sbjct: 326 LTEAELDAWIAKLKEADLMAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAP 385 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L D K +K+ ++DI++L G++++ V F T + S + + Sbjct: 386 TQIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAFDTMLESYVFNSV 444 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167 ++H + + LG ++ + A L+ Q+ YAA D L Sbjct: 445 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHL 504 Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195 +L++ + + EL L Sbjct: 505 WPRLEKE-------AELAAMFTEVELPL 525 >gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146] gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146] Length = 930 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 20/176 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R + A DTET L L + + G I +A +AP+ L Sbjct: 347 LRQAGSFAFDTETDSLDVLSANLVGISCADKPGQACYIPLAHDYLDAPHQLDRQYVLARL 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE KI ++DI V+ G+ +R V F T + S + + +H + Sbjct: 407 QPLLEDEGIAKIGQNLKYDIGVMARY-GITLRGVAFDTMLESYVLNSVAGRHDMDSLSAR 465 Query: 126 LLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L K + ++ L +YAA D L L+ Sbjct: 466 HLDHKTITFEEIAGKGKGQLTFNQIPLEQA-SEYAAEDADVTLQLHQHLWPMLEGE 520 >gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380] gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380] Length = 932 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 22/214 (10%) Query: 5 RVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + A+ R + A DTET GL L + + G + +A + Sbjct: 335 TILDEQTLADWIERLKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLD 394 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 AP L +L DEK K+ +FD ++L G+ +R + F T + S + Sbjct: 395 APAQLDRQWVLDTLKPLLEDEKALKVGQNLKFDQSMLARY-GIDLRGIAFDTMLESYVLD 453 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165 + +H + + L ++ + + L+ Q+ YAA D L L Sbjct: 454 SVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHL 513 Query: 166 QFTEKLQR-LGRSDLATS-CCNFLMDRAELDLLG 197 KLQ+ G + L + ++ G Sbjct: 514 VLWPKLQQSEGLKRVFQDIEMPLLPILSRIERTG 547 >gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814] gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814] Length = 956 Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 63/214 (29%), Gaps = 37/214 (17%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------AAGQKNAPN----- 65 A+ V I VDTET GL L V L+ G I + AP Sbjct: 359 AQAVGVIGVDTETDGLDAIGANLVGVSLALGPNDACYIPLGHTGDGDLLGDGAPEQMDMK 418 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRLTRTYT 114 L ML D K+ ++D+ V + P+ T + S Sbjct: 419 LALGILKPMLEDPTILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAALEAGQ 478 Query: 115 NQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 + HG+ + K + + +YAA D L Sbjct: 479 HNHGMDVLSELHFDHKPIPFKEVAGTGKKQITF---DKVPVPEA-TKYAAEDADVTLRLW 534 Query: 165 LQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 +L G + L + + A+++ G Sbjct: 535 ALLKPRLSAEGMATLYETIERPMVPVVAQMERAG 568 >gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] Length = 958 Score = 68.5 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 + +++DTET G P L + S + + + A ++ + +EK Sbjct: 385 SEILSIDTETTGTEPMDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKS 444 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ +L GV+V+ +F T +A + + +H + + L I+I Sbjct: 445 MKVGQNIKYDMIILQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 502 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DL E + +YA D L+ ++L+ G L Sbjct: 503 DELIGARGKNQK----NMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEI 558 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 559 EMPLVPVLVNIESNG 573 >gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565] gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565] Length = 921 Score = 68.5 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 70/203 (34%), Gaps = 26/203 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L R+ V + G + AP L Sbjct: 338 LKAAPLFAFDTETTSLDYMEARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLSEAVVLGKL 397 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D K+ ++D VL + ++ + + T + S + + ++H + K Sbjct: 398 KPLLEDPTCLKVGQNLKYDRNVLLNH-DIDLQGIAYDTMLESYVLNSTASRHDMDSLAKR 456 Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL-G 175 LG+ D L+ Q++ YAA D L +L+ + G Sbjct: 457 YLGVE---TTSFEDIAGKGVKQLTFNQIELEQAAPYAAEDADITLRLHQTLWGQLEAVPG 513 Query: 176 RSDLATS-CCNFLMDRAELDLLG 197 + + + L A ++LLG Sbjct: 514 LAKVFSEIELPLLPVLARMELLG 536 >gi|313673321|ref|YP_004051432.1| 3'-5' exonuclease [Calditerrivibrio nitroreducens DSM 19672] gi|312940077|gb|ADR19269.1| 3'-5' exonuclease [Calditerrivibrio nitroreducens DSM 19672] Length = 201 Score = 68.5 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 16/155 (10%) Query: 23 IAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + DTET P + L ++Q++ + K+ + L + + K Sbjct: 53 VGFDTET---KPSFKKKIKNHLSLIQIATENKAFLF--HLKQIKDKSIIFEYLNNPEITK 107 Query: 78 IFHYGRFDIAVLFYTFGVRV-RPVF-CTK-IASRLTRTYTNQHGLKDNLKELLGINISKA 134 I DI + + + + F + IA ++ + L+ L I K+ Sbjct: 108 IGAGIADDIKKINELSNIEILKNSFMDLQFIAKQM---NLPRTNLRFLSAYFLNKRIIKS 164 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 Q+S+W L+ +Q+ YAA+D + + + Sbjct: 165 SQTSNWDKYPLTPKQMLYAATDAWICLKIYKKILK 199 >gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200] Length = 922 Score = 68.5 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 25/190 (13%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E + A + IAVDTET L L + + G + +A AP Sbjct: 327 LTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAP 386 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTY 113 L +L D+K +K+ ++DI+VL G++++ VF T + S + + Sbjct: 387 QQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVFDTMLESYVFNSV 445 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164 ++H + + LG K D A L+ Q+ YAA D L Sbjct: 446 ASRHDMDGLALKYLGH---KNIGFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLH 502 Query: 165 LQFTEKLQRL 174 +L++ Sbjct: 503 QHLWPRLEKE 512 >gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1] Length = 915 Score = 68.5 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 18/176 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET GL ++ +L + + + +A + AP L Sbjct: 330 LRQAPLFAFDTETTGLDAQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPAQLDREAVLLAL 389 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 +L D + K+ ++DI +L + +R V + T + S + + +H + + Sbjct: 390 KPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQ 449 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 + L + + A L+ Q+ YAA D L +L + Sbjct: 450 KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHDALQARLAQT 505 >gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium] Length = 647 Score = 68.5 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 18/170 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGML 70 A+DTET L R + ++ I +A + AP + +L Sbjct: 346 KRFAIDTETTSLDYRIAEMVGFSVAFDANDAYYIPLAHDYEGAPEQLNRDAIIQQIKPIL 405 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGI 129 D EKI H+ ++D + G+ ++ F T +AS + T +HG+ D + L Sbjct: 406 EDPSVEKIGHHLKYDAHIFENH-GIHLQGWYFDTMLASYVLNAVTTRHGMDDVARVYLSH 464 Query: 130 NISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 + +Q + A + Q++ YAA D + L KL+ Sbjct: 465 LTTTFEQVAGKGAKQKTFNQIEIETAGHYAAEDAHVTYRLYEVLERKLKE 514 >gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b] gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b] Length = 938 Score = 68.5 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 29/184 (15%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------------AAGQK 61 + +AVDTET L + L + L+ G I + A GQ Sbjct: 348 QARGLVAVDTETTSLNEMQAALVGISLAVEPGRACYIPLRHTEGASGDLFSSDALAEGQL 407 Query: 62 NAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + L ML D+ KI ++D + G+RV P T + S + H Sbjct: 408 DLDAVLGALKPMLEDDAILKIGQNMKYDAKIFARH-GIRVAPFDDTMLMSYALNAGIHGH 466 Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G+ + L + + + + ++D ++YAA D L F + Sbjct: 467 GMDTLSERYLSHQPIPIKELLGTGKSAVTFDRVPVADA-VKYAAEDADITLRLWHVFKPQ 525 Query: 171 LQRL 174 L R Sbjct: 526 LHRE 529 >gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 917 Score = 68.5 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 22/206 (10%) Query: 13 AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65 E AR A DTET L R+ V + G + AP Sbjct: 328 DEWLARLQAAPLFAFDTETTSLDYMEARVVGVSFAIEPGKAAYVPFGHDYLGAPVQLTEA 387 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119 L +L D R K+ ++D VL G+ ++ + + T + S + + ++H + Sbjct: 388 VVLGKLKPLLEDPARLKVGQNLKYDRNVLLNH-GIELQGIAYDTMLESYVLNSTASRHDM 446 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 + L ++ + L+ Q++ YAA D L KL Sbjct: 447 DSLARRYLNAETISFEEIAGKGVKQLTFNQIELEQAAPYAAEDADITLRLHQALWGKLSA 506 Query: 174 L-GRSDLATS-CCNFLMDRAELDLLG 197 G + + + L A ++ LG Sbjct: 507 EPGLAKVFSEIELPLLPVLARMERLG 532 >gi|153001896|ref|YP_001367577.1| 3'-5' exonuclease [Shewanella baltica OS185] gi|151366514|gb|ABS09514.1| 3'-5' exonuclease [Shewanella baltica OS185] Length = 315 Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 12/139 (8%) Query: 21 DAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + DTET +R L ++Q++ D + + A + L +L DE Sbjct: 131 PVLGFDTET---RASFERGVQHPLSLIQIATAD-ACYLFQHAILGEQFTQLKTVLEDENI 186 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-- 133 K+ R D L +G+ V A G + + LLG I K Sbjct: 187 LKVGVGLRSDAQALKRQWGINVASKLDLNWALAQLGAEKE-MGTRQLVATLLGTRIDKPK 245 Query: 134 AQQSSDWSADDLSDEQLQY 152 S+W LS Q+ Y Sbjct: 246 KITLSNWQHVPLSSAQIDY 264 >gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 951 Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 + +++DTET G P L + S + + + A ++ + +EK Sbjct: 378 SEILSIDTETTGTEPMDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKS 437 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ +L GV+V+ +F T +A + + +H + + L I+I Sbjct: 438 MKVGQNIKYDMIILQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 495 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DL E + +YA D L+ ++L+ G L Sbjct: 496 DELIGARGKNQK----NMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEI 551 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 552 EMPLVPVLVNIESNG 566 >gi|195396214|ref|XP_002056727.1| GJ10057 [Drosophila virilis] gi|194143436|gb|EDW59839.1| GJ10057 [Drosophila virilis] Length = 591 Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 8/163 (4%) Query: 21 DAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + D E T+G RR + ++QLS G + R+ ++ +L +L D+ K+ Sbjct: 72 KVLGFDCEWITVGG-TRRP-VALLQLSSYKGLCALFRLCCMKQIPKDLRELLEDDSVIKV 129 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ-- 136 + D L + FGV V + + ++ GL + L + K + Sbjct: 130 GVAPQDDAMKLSHDFGVGVASTLDLRYMAIMSGHPAE--GLGKLSQTHLNYVLDKNWRLA 187 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 S+W A L QL YAA+D + A+ + + L+ D Sbjct: 188 CSNWEAPQLEAAQLNYAANDALAAVAIFQKLSRDLEPRTFWDW 230 >gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] Length = 949 Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 63/192 (32%), Gaps = 21/192 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREK 77 ++ DTET GL P L V S G I + A L EK Sbjct: 378 SVCFDTETTGLDPLVAELVGVAFSWEAGKGYYIPFPESKDEAQALIEELRPFFEHTGIEK 437 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130 I ++DI VL +F T +A L +H + + L Sbjct: 438 IGQNLKYDIKVLAKYDVKVKGKLFDTMLAHYLINP-DMRHNMDVLAETYLNYTPVSITEL 496 Query: 131 ISKA--QQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCN 185 I K Q S L D+Q +YA D L+ F ++L G L Sbjct: 497 IGKKGKNQKS---MRDVPL-DQQTEYAVEDADITLQLKQHFEKELDEAGTRKLFNDIEIP 552 Query: 186 FLMDRAELDLLG 197 L A +++ G Sbjct: 553 LLRVLAAMEVEG 564 >gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51] gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51] Length = 915 Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 20/201 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET GL ++ +L + + + +A + AP L Sbjct: 330 LRQAPLFAFDTETTGLDAQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVLLAL 389 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLK 124 +L D + K+ ++DI +L + T + S + + +H + + Sbjct: 390 KPLLEDPAKAKVGQNAKYDINILANGSPAIAMRGVAYDTMLESYVLNSTATRHDMDSLAQ 449 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSD 178 + L + + A L+ Q+ YAA D L +L + Sbjct: 450 KYLDHTTIAFEDIAGKGAKQLTFNQIDLDKAGPYAAEDADITLRLHHALQARLAQTPSLQ 509 Query: 179 --LATSCCNFLMDRAELDLLG 197 L + A+++ G Sbjct: 510 PVLMDIEMPLVPVLAKIERQG 530 >gi|99032230|pdb|2FBT|A Chain A, Wrn Exonuclease gi|99032231|pdb|2FBV|A Chain A, Wrn Exonuclease, Mn Complex gi|99032232|pdb|2FBX|A Chain A, Wrn Exonuclease, Mg Complex gi|99032233|pdb|2FBY|A Chain A, Wrn Exonuclease, Eu Complex gi|99032234|pdb|2FC0|A Chain A, Wrn Exonuclease, Mn Dgmp Complex Length = 205 Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + +++ L +L ++ +K I L F Sbjct: 65 KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 120 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A++ + T L +K LLG + K+ + S+WS L+++Q Sbjct: 121 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 179 Query: 151 QYAASD 156 YAA+D Sbjct: 180 LYAATD 185 >gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597] gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597] Length = 935 Score = 68.1 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 65/213 (30%), Gaps = 59/213 (27%) Query: 5 RVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRL---CI---------VQL----SP 46 V D A R +AVDTET GL R L C+ V L + Sbjct: 330 TVTNADQLAVWIGRIRERGYVAVDTETTGLDEMRADLVGICLATEPGLACYVPLGHKAAE 389 Query: 47 GDGTVDIIRIAAGQ----KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102 G+G +A GQ + L +L DE KI ++D +L G+ V P Sbjct: 390 GEGLFATEDLAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYDAKILKR-CGIDVAPCDD 448 Query: 103 TKIASRLTRTYTNQHGLKDNLKELL---------------------GINISKAQQSSDWS 141 T + S +QHG+ L + I KA + Sbjct: 449 TMLISYALNAGLHQHGMDALADRYLSHTCIPIKELLGTGKAMITFDKVPIDKATR----- 503 Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 YAA D L +L Sbjct: 504 ----------YAAEDADVTLRLWQVLKPQLHAK 526 >gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 932 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD ++L G+ +R + F T + S + + +H + + Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERTG 547 >gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11] Length = 932 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD ++L G+ +R + F T + S + + +H + + Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERTG 547 >gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13] gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13] Length = 933 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 350 LKNAEVFAFDTETDGLDTLTANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRAYVLETL 409 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ +FD+ +L + +R + F T + S + + +H + Sbjct: 410 KPLLEDEKALKVGQNLKFDMGLLARY-DITLRGIAFDTMLESYVLDSVGGRHDMDSLSDR 468 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 LG ++ + L+ Q+ YAA D L L +L+ Sbjct: 469 YLGHKTVTFEEIAGKGKKQLTFNQIALEQAAPYAAEDADVTLQLHLAMWPQLKE 522 >gi|91079648|ref|XP_968350.1| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium castaneum] Length = 1009 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%) Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + L + + LG + K+ Q S+W L + QL YAA D L + Sbjct: 753 QGSGPSLGTLVNQCLGRPLDKSDQFSNWEKRPLRNSQLVYAALDAYCLIEVYDVIK 808 >gi|193786324|dbj|BAG51607.1| unnamed protein product [Homo sapiens] Length = 496 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 44 LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G ++R+ G+ L+ +L D K+ D + L +G+ VR Sbjct: 1 MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60 Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155 + + R N LK + +L + K+ + S+W A+ L+++Q+ YAA Sbjct: 61 CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120 Query: 156 DVVHLHALRLQF 167 D AL L Sbjct: 121 DAQISVALFLHL 132 >gi|221482990|gb|EEE21314.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma gondii GT1] Length = 1048 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 62/194 (31%), Gaps = 47/194 (24%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREK 77 +A+D E +P ++ L+ + + L + + K Sbjct: 811 VVALDLE--WTLPHAA--SVLSLATESRVFLVDLVNDNPVYKATLLQMLRWLFANPFIAK 866 Query: 78 IFHYGRFDIAVLFYTFGVRVRP---VFCTK------------------IAS--------- 107 + + DI LF+ G P V C IA Sbjct: 867 LMYQASGDITKLFFALGAVGSPGALVHCIDLRKGRHLANSERELREGVIAKEHFLEKNEE 926 Query: 108 ----RLTRTYTNQH-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 R R + L++ +++L ++ K++Q S+W+ L+ Q YAA D L Sbjct: 927 ETPERYMRPVKRRFPSLQEMCRQVLHADLDKSEQRSNWNMRPLTASQAHYAALDAYVLI- 985 Query: 163 LRLQFTEKLQRLGR 176 L+R G Sbjct: 986 ---LLEAALRRQGW 996 >gi|167536930|ref|XP_001750135.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771297|gb|EDQ84965.1| predicted protein [Monosiga brevicollis MX1] Length = 1125 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 11/163 (6%) Query: 17 ARYVDAIAVDTETL-GLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKN-APNLVGMLVDE 73 A V + +D+E + D + I+QL+ D V + +A + P L+ + DE Sbjct: 461 AGLVPILGLDSEWKPRTLSHADEPVAILQLATRDALVILDTLALPSSSYDPWLLQLWTDE 520 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA------SRLTRTYTNQHGLKDNLKELL 127 K + D+ L ++ F A + L + Sbjct: 521 TVVKTGFAFKGDMTKLRHSA--PSARCFEALHAFVELEHAAKAYCADWGASLGSLTATVF 578 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G +++K + SDWS L+ QL YAA D L + + Sbjct: 579 GRHLNKVDRMSDWSQRPLTKRQLHYAALDAWICVKLLERLLTE 621 >gi|50949589|emb|CAD39094.2| hypothetical protein [Homo sapiens] Length = 496 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 44 LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G ++R+ G+ L+ +L D K+ D + L +G+ VR Sbjct: 1 MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60 Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155 + + R N LK + +L + K+ + S+W A+ L+++Q+ YAA Sbjct: 61 CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120 Query: 156 DVVHLHALRLQF 167 D AL L Sbjct: 121 DAQISVALFLHL 132 >gi|309361662|emb|CAP29570.2| CBR-MUT-7 protein [Caenorhabditis briggsae AF16] Length = 927 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 25/161 (15%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNL------VGMLVDEKREKIFHYGRFDIAVL-- 89 ++ I+QL D + + + ++ P+L G+ K + I R D+ + Sbjct: 467 KIAIIQLFFKDKVLLVDCVELEKEKVPDLLWERFAKGLFETPKLKLIGFDMRNDLEAIIE 526 Query: 90 ---------------FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 Y + I + L D + LLG + K Sbjct: 527 LPALKGRLNLEQIKNAYDLKRLAENICD--IDMDILELPKKTFKLADLTQYLLGQVLDKT 584 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +Q S+W L +Q+ YAA D V + + EK Q Sbjct: 585 EQCSNWQCRPLRKKQILYAALDAVVVVNTFKKILEKTQERN 625 >gi|158258563|dbj|BAF85252.1| unnamed protein product [Homo sapiens] Length = 496 Score = 68.1 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 44 LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G ++R+ G+ L+ +L D K+ D + L +G+ VR Sbjct: 1 MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60 Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155 + + R N LK + +L + K+ + S+W A+ L+++Q+ YAA Sbjct: 61 CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120 Query: 156 DVVHLHALRLQF 167 D AL L Sbjct: 121 DAQISVALFLHL 132 >gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] Length = 948 Score = 68.1 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 19/191 (9%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL----VGMLVDEKREK 77 ++ DTET G+ +L + S G + Q++A L E EK Sbjct: 375 SVCFDTETTGIDALNAQLVGMSFSFEKGKAFYVPFPENQEDAQVLADKFKPFFESESIEK 434 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130 I ++D+ +L + +F T IA L +H + + L + Sbjct: 435 IGQNIKYDLKILSHYGVQIKGKLFDTMIAHYLINP-DMRHNMDVLSETYLKYSPKSIEDL 493 Query: 131 ISK--AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186 I K Q S D+S E++ +YAA D + L+ F+ L + L Sbjct: 494 IGKKGKNQKS---MRDVSLEEIKEYAAEDADITYQLKQNFSPILDKAETKKLFEEIEIPL 550 Query: 187 LMDRAELDLLG 197 + A ++L G Sbjct: 551 IPVLAAMELEG 561 >gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37] gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37] Length = 934 Score = 68.1 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 38/195 (19%) Query: 13 AECAARYVD--AIAVDTETLGLMPRRDRLC-I--VQLSPGDGTVDIIRIAAGQKN----- 62 AR +D +AVDTET GL + LC + + L+ G I +A ++ Sbjct: 336 DRWIARAMDLGTVAVDTETTGLN---EMLCDLVGISLAVAPGEACYIPLAHLAEDGGEGL 392 Query: 63 ----------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 L +L D KI ++D + G+ + P+ T + Sbjct: 393 FASDAKAEGQIPMQQALDALKPLLEDASVMKIGQNMKYDAKIFSRY-GIEIAPIDDTMLM 451 Query: 107 SRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVH 159 S +QHG+ + L + + + L YAA D Sbjct: 452 SYALHGGEHQHGMDTLSERYLAHTPIPIKDLLGTGKSQITFDRVPLDKA-TGYAAEDADI 510 Query: 160 LHALRLQFTEKLQRL 174 L L F +L R Sbjct: 511 TLRLALTFKPQLHRA 525 >gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440] gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440] Length = 915 Score = 68.1 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 18/176 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 R A DTET GL ++ +L + + + +A + AP L Sbjct: 330 LRQAPLFAFDTETTGLDAQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLAL 389 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 +L D + K+ ++DI +L + +R V + T + S + + +H + + Sbjct: 390 KPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQ 449 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 + L + + A L+ Q+ YAA D L +L + Sbjct: 450 KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHHALQARLAQT 505 >gi|8922631|ref|NP_060669.1| exonuclease 3'-5' domain-containing protein 2 isoform 2 [Homo sapiens] gi|37999798|sp|Q9NVH0|EXD2_HUMAN RecName: Full=Exonuclease 3'-5' domain-containing protein 2; AltName: Full=Exonuclease 3'-5' domain-like-containing protein 2 gi|7022954|dbj|BAA91781.1| unnamed protein product [Homo sapiens] gi|12805017|gb|AAH01962.1| Exonuclease 3'-5' domain containing 2 [Homo sapiens] Length = 496 Score = 68.1 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 44 LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G ++R+ G+ L+ +L D K+ D + L +G+ VR Sbjct: 1 MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60 Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155 + + R N LK + +L + K+ + S+W A+ L+++Q+ YAA Sbjct: 61 CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120 Query: 156 DVVHLHALRLQF 167 D AL L Sbjct: 121 DAQISVALFLHL 132 >gi|298709045|emb|CBJ30994.1| conserved unknown protein [Ectocarpus siliculosus] Length = 216 Score = 68.1 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 7/116 (6%) Query: 10 DIPAECAARYVDAIA-----VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-KNA 63 D PA+ +A D A D E C++Q+S + +A G N Sbjct: 68 DTPAKLSALAEDLNACREWSFDVEAHNARTYYGLACLLQISTEWKDYVVDPLAEGMWDNM 127 Query: 64 PNLVGMLVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L + KI H R D+ LF FG + T+ A + G Sbjct: 128 GLLRDAFGNPDVLKIGHSIRSLDVPSLFRDFGFVIVNAVDTEEAVHALGGKQSALG 183 >gi|114653647|ref|XP_001141213.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] gi|114653649|ref|XP_001141295.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 4 [Pan troglodytes] gi|114653651|ref|XP_001141380.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 5 [Pan troglodytes] gi|114653653|ref|XP_001141459.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes] Length = 496 Score = 67.7 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 44 LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G ++R+ G+ L+ +L D K+ D + L +G+ VR Sbjct: 1 MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60 Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155 + + R N LK + +L + K+ + S+W A+ L+++Q+ YAA Sbjct: 61 CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120 Query: 156 DVVHLHALRLQF 167 D AL L Sbjct: 121 DAQISVALFLHL 132 >gi|291386094|ref|XP_002709593.1| PREDICTED: Werner syndrome protein [Oryctolagus cuniculus] Length = 1416 Score = 67.7 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 12/138 (8%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 R+ ++QL + + I++ L +L ++ +K I L F Sbjct: 96 RVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAIKK----AGIGIEGDQWKLLRDF 151 Query: 94 GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 ++++ T +A+ + L +K LLG + K+ + S+WS L+++Q Sbjct: 152 DIKLKSFVELTDVANEKLKC-AETWSLNGLVKHLLGKQLLKDKSIRCSNWSNFPLTEDQK 210 Query: 151 QYAASDVVHLHALRLQFT 168 YAA+D + + Sbjct: 211 LYAATDAYAGLIIYRKLE 228 >gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15] gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15] Length = 892 Score = 67.7 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 49/141 (34%), Gaps = 12/141 (8%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ E + AVD ET L P + + LS D I + Sbjct: 294 RTVATEEEFEALLADLKAAGTFAVDLETTSLNPLEAEIVGISLSYRDHEACYIPVGHFYL 353 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLT 110 AP L +L+D K K+ ++D V G+ + V+ T +AS L Sbjct: 354 GAPEQLPRRRVLDALTPLLIDPKIRKVGQNLKYDYQVFRRH-GIELGGVWCDTMVASYLL 412 Query: 111 RTYTNQHGLKDNLKELLGINI 131 + HGL E L + Sbjct: 413 NPVRSGHGLDSLAVEHLDHKM 433 >gi|37999725|sp|Q8VEG4|EXD2_MOUSE RecName: Full=Exonuclease 3'-5' domain-containing protein 2; AltName: Full=Exonuclease 3'-5' domain-like-containing protein 2 gi|17391198|gb|AAH18508.1| Exonuclease 3''-5'' domain-like 2 [Mus musculus] gi|74189569|dbj|BAE36791.1| unnamed protein product [Mus musculus] gi|74196573|dbj|BAE34403.1| unnamed protein product [Mus musculus] gi|74198515|dbj|BAE39739.1| unnamed protein product [Mus musculus] Length = 496 Score = 67.7 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 14/135 (10%) Query: 44 LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G ++R+ G+ L+ +L D K+ D L +G+ VR Sbjct: 1 MASPSGFCALVRLPRLIYGGRTLPRTLLDILADGAILKVGVGCSEDANKLLQDYGLIVRG 60 Query: 100 VFCTKIASRLTRTYTNQH-----GLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQY 152 L N LK + +L + K+ + S+W A++L+++Q+ Y Sbjct: 61 CLD---LRYLAMKQGNNILCNGLSLKSLAETILNFPLDKSLLLRCSNWDAENLTEDQVTY 117 Query: 153 AASDVVHLHALRLQF 167 AA D AL L Sbjct: 118 AARDAQISVALFLHL 132 >gi|255075999|ref|XP_002501674.1| predicted protein [Micromonas sp. RCC299] gi|226516938|gb|ACO62932.1| predicted protein [Micromonas sp. RCC299] Length = 725 Score = 67.7 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT----EKLQ 172 GL +LG + KA + SDWS L+ Q+ YAA D L L E+L+ Sbjct: 655 VGLSHLTAAVLGKPLDKATRMSDWSKRPLTPRQVTYAALDAWVLVELMRTLRENHAEELE 714 Query: 173 RL 174 RL Sbjct: 715 RL 716 >gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1016 Score = 67.7 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 70/219 (31%), Gaps = 39/219 (17%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRI--------- 56 AR +A DTET L + L L+ D T D + + Sbjct: 410 ADARVTGLVAFDTETTSLDAMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVGDL 469 Query: 57 ---------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 + P L +L DE K+ ++D +L +G+ R T + S Sbjct: 470 LGGGLAENQIPMRDALPRLKALLEDEAVLKVAQNLKYD-YLLLKRYGIETRSFDDTMLIS 528 Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159 + T HG+ ++ LG K S +++ D YAA D Sbjct: 529 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GKANVTFDLVDIDRATHYAAEDAEV 586 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L L +L G + + L A ++ G Sbjct: 587 TLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 625 >gi|307186805|gb|EFN72228.1| Werner syndrome ATP-dependent helicase [Camponotus floridanus] Length = 232 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 14/158 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + D E + +VQ+ P ++ I + K V +L K + Sbjct: 72 PLGFDLEWPF-SFQTGSGKTALVQICPDVNVCYLLHIYSLNKLPAAFVELLCHPKVMLVG 130 Query: 80 HYGRFDIAVLFYTFGVRVRP------VFCTKIA-SRLTRTYTNQHGLKDNLKELLGINIS 132 + D+ L F + C A RL R+ + L+ +L I Sbjct: 131 VNIKNDLRKLERDFKEFPAQKIVDNCLDCGPFANQRLLRSG--RWSLERLTTLVLKKKID 188 Query: 133 K--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 K + S W LSD Q YAA+D + + Sbjct: 189 KNPEVRRSKWHVQPLSDAQKIYAATDAYVSLLIYRELE 226 >gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] Length = 920 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76 +++++DTET L + S + + + A + A + +K Sbjct: 348 ESVSIDTETTSTDAISAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPLYESDKIM 407 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDN-LKEL 126 KI ++D VL +F T IA L + + G + ++EL Sbjct: 408 KIGQNIKYDYEVLTRYGVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLLGYQTIHIEEL 467 Query: 127 LGINISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 LG K + + DLS + +YAA D L+ +L+ LG +L + Sbjct: 468 LGPKGKKQK-----NMRDLSPTDIYEYAAEDADITLRLKNVLEPRLKELGVEELFWNIEM 522 Query: 185 NFLMDRAELDLLG 197 + A+++L G Sbjct: 523 PLVRVLADMELNG 535 >gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] Length = 952 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 + +++DTET G P L + S + + + A + A + +E Sbjct: 378 TEILSIDTETTGTEPMEAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFRPLYENENS 437 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL GV+V+ +F T +A + + +H + + L I+I Sbjct: 438 MKVGQNIKYDMIVLQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLRYRTIHI 495 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ S DL E + +YA D L+ ++L++ L Sbjct: 496 DELIGSRGKNQK----SMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAEHLFYEI 551 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 552 EMPLVPVLVNIESNG 566 >gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] Length = 931 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 23/203 (11%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNL 66 + + A+ ++DTET G+ P L + S + + + A ++ A Sbjct: 351 LAEKLLAQ--KFFSLDTETTGIDPITAELVGMSFSFAENQAFYVPVPANREEALTIVNIF 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + KI ++D+ +L +F T IA + + +HG+ + Sbjct: 409 KPAFENPDSLKIGQNIKYDLIMLANYGVTLKGKMFDTMIAHYVLQPEL-RHGMDYLAEIY 467 Query: 127 LG---INIS-------KAQQSSDWSADDL-SDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L I I K Q + DL + +YA D L+ +L+ G Sbjct: 468 LKYETIKIEELIGAKGKKQG----NMRDLAPEAVYKYACEDADVTLKLKQVLENELETNG 523 Query: 176 RSDLATS-CCNFLMDRAELDLLG 197 L + A ++ G Sbjct: 524 VKKLFEEIEMPLVPVLAYMERNG 546 >gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CNPAF512] Length = 997 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 70/219 (31%), Gaps = 39/219 (17%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA-------- 57 AR +A DTET L + L ++ D D + +A Sbjct: 391 ADARDTGLVAFDTETTSLDAMQAELVGFSMAIADNVADPSGTKIRAAYVPLAHKNGVGDL 450 Query: 58 ----------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 + P L +L DE K+ ++D +L +G+ + T + S Sbjct: 451 LGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETKSFDDTMLIS 509 Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159 + T HG+ ++ LG K S +++ D YAA D Sbjct: 510 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GRANVTFDLVDIDRATHYAAEDADV 567 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L L +L G + + L A ++ G Sbjct: 568 TLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 606 >gi|297695398|ref|XP_002824930.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like isoform 4 [Pongo abelii] gi|297695400|ref|XP_002824931.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like isoform 5 [Pongo abelii] Length = 496 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 44 LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G ++R+ G+ L+ +L D K+ D + L +G+ VR Sbjct: 1 MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60 Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155 + + R N LK + +L + K+ + S+W A+ L+++Q+ YAA Sbjct: 61 CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120 Query: 156 DVVHLHALRLQF 167 D AL L Sbjct: 121 DAQISVALFLHL 132 >gi|302673415|ref|XP_003026394.1| hypothetical protein SCHCODRAFT_114457 [Schizophyllum commune H4-8] gi|300100076|gb|EFI91491.1| hypothetical protein SCHCODRAFT_114457 [Schizophyllum commune H4-8] Length = 357 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 L ++ ++ DG V + A L+ + D K+ + D ++ F V V Sbjct: 86 LRLLTIAR-DGVVIAFDLVALGAIPGRLIEIFADPTIIKVGIELKSDCILILRHFAVAVY 144 Query: 99 P------VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 ++ + S T+ L D + +G+ I K Q SDW L++EQ+ Y Sbjct: 145 NGWELSQLWKSMHPSIEAGPLTSHISLDDMARITVGVRIMKEMQRSDWGTSVLTEEQIDY 204 Query: 153 AASDVVHLHAL 163 A D L + Sbjct: 205 ALIDAYMLIPM 215 >gi|297307109|ref|NP_001137329.2| Werner syndrome [Bos taurus] Length = 1404 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 19/159 (11%) Query: 21 DAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 D + D E R+ ++QL + + I++ L +L + Sbjct: 75 DVVGFDIE-------WPPFKKGTLSRVALIQLCVAESKCYLFHISSMSGFPQGLKMLLEN 127 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131 E +K D L F + ++ + T +A+ + L +K L G + Sbjct: 128 EAIKKAGVGIEQDQWKLLRDFDINLKSIVELTDVANEKLKC-IETWSLNGLVKYLFGKQL 186 Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 ++ + SDWS L+++Q YAA+D + + Sbjct: 187 LKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQKLA 225 >gi|194902046|ref|XP_001980562.1| GG17221 [Drosophila erecta] gi|190652265|gb|EDV49520.1| GG17221 [Drosophila erecta] Length = 579 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 8/159 (5%) Query: 18 RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + D E T+G RR + ++QLS G + R+ ++ +L +L D+ Sbjct: 75 QTFKVLGFDCEWITVG-SSRRP-VALLQLSSHRGLCALFRLCHMKQIPKDLRDLLEDDDV 132 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ + D L + +GV V + + GL K L + K Sbjct: 133 IKVGVAPQEDAVKLSHDYGVGVASTLDLRFLCVMAGHKPE--GLGKLSKTHLNFTLDKHW 190 Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + S+W A +L +QL YAA+D + A+ + LQ Sbjct: 191 RLACSNWEAKNLEPKQLDYAANDALMAVAIYQKLCRDLQ 229 >gi|302346700|ref|YP_003814998.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845] gi|302150614|gb|ADK96875.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845] Length = 217 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 13/165 (7%) Query: 21 DAIAVDTETLGLMP-----RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 D I +DTET P +R ++ ++Q + G + L D Sbjct: 46 DIIGIDTET---RPVFKKGQRRKVALLQACDHEVCFLFRLNLIGVPEC--IKRFLEDTTV 100 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ D+ +L + + + L+ + I+K + Sbjct: 101 PKVGLSLGDDMLMLHQRLDFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFHERITKRE 158 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 Q S+W + LSD+Q YA++D L + E L+ G +L Sbjct: 159 QLSNWENEILSDKQKIYASTDAWTCIKLYERLHE-LKHSGNYELV 202 >gi|294673634|ref|YP_003574250.1| 3'-5' exonuclease [Prevotella ruminicola 23] gi|294472246|gb|ADE81635.1| 3'-5' exonuclease [Prevotella ruminicola 23] Length = 217 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 12/159 (7%) Query: 19 YVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 + DTET G+ + ++Q+S + R+ P + +L D Sbjct: 44 AQPVLGFDTETRPSFKKGVHH---KCSLLQVST-SNCCFLFRLNHIG-LCPAVKRLLADN 98 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+ R D L + + +R + L + G ISK Sbjct: 99 TVTKVGLAWRNDALGLHQLGDFEMGEFVDLQDMAR--KIGIEDQSLAKLYANVFGERISK 156 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 +Q ++W D L D Q +YAA+D L +F ++ Sbjct: 157 REQLTNWERDVLDDHQKRYAATDAWACVQLYNEFKRMIE 195 >gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511] gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511] Length = 904 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 20/193 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-REKIF- 79 +A DTET GL R ++ + + + +A V + +K EK+ Sbjct: 335 VVAFDTETTGLDTRSAKMVGFSFAFEEEKAYYVPVAHSYLGVGPQVSLEAAKKAIEKLMR 394 Query: 80 H-----YGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 H +FD+++L+ + P T I + L ++ GL ++ LG + K Sbjct: 395 HRIVGQNLKFDLSLLYSHLEMEPIEPEADTMILAWLLDP-GSRVGLDILAQKFLGYQM-K 452 Query: 134 AQQSS-----DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS----CC 184 + + + D+S+ L + YAA D L + TE ++ G L Sbjct: 453 SFKETVKKGEDFSSVALEEA-AFYAAEDAWATRQLYFRLTELFKKGGLEHLLKEAKEVEF 511 Query: 185 NFLMDRAELDLLG 197 F+ ++ LG Sbjct: 512 PFINVLIAMERLG 524 >gi|260911820|ref|ZP_05918387.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634031|gb|EEX52154.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 472 str. F0295] Length = 207 Score = 67.7 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 21/172 (12%) Query: 21 DAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 D + VDTET P + + ++Q+S + G P ++ +L + Sbjct: 46 DILGVDTET---RPSFKKGESHMVSLLQVSTSNTCFLFRLNHIGIT--PAILRLLENTTV 100 Query: 76 EKI---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINI 131 + H D+ L G + L L+ L I Sbjct: 101 PMVGLSLHD---DMLSLHKRVGFTPGNFIDLQ---DLVGELGIEDLSLQKLYANLFHQKI 154 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 SK Q+ ++W +D L+D+Q YAA D L + +L+ G +L + Sbjct: 155 SKRQRLTNWDSDVLNDKQKAYAALDAWACINLYKEIL-RLKNSGDYELVINE 205 >gi|150006113|ref|YP_001300857.1| hypothetical protein BVU_3624 [Bacteroides vulgatus ATCC 8482] gi|149934537|gb|ABR41235.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] Length = 216 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 14/169 (8%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + VDTE ++ ++Q+S D + P+ + Sbjct: 37 AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + KI + D L V ++ + R L+ L Sbjct: 92 EFLMSNTLKIGLSLKDDFNSLRKREDVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 G ISK+Q+ S+W A+ LS+ Q YAA+D + TE L+R G Sbjct: 150 FGQKISKSQRLSNWEAEVLSEGQKLYAATDAWACVEIYNCLTE-LERTG 197 >gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105] gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105] Length = 927 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 19/169 (11%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLV 71 +A DTET L P R+ + S G I + A L Sbjct: 351 PVAFDTETDSLEPMNARIVGLSFSVKPGVGYYIPLTHQDLTAEPQLPLAEVLAFLKPWFE 410 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D KI ++D+ V+ V V+ +F T +AS + + HG+ L N Sbjct: 411 DSDSPKIAQNAKYDLHVMANH-DVWVKGLFEDTMLASYILEAHKP-HGMDALALRWLNYN 468 Query: 131 ISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 K ++ + A ++ +Q+ +YAA D L +L + Sbjct: 469 TIKYEEVAGKGASQITFDQVPIDTATKYAAEDAEVTLRLAHALKAELDK 517 >gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32] gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32] Length = 922 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 25/190 (13%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E + A + IAVDTET L L + + G + +A AP Sbjct: 327 LTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAP 386 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTY 113 L +L D+K +K+ ++DI+VL G++++ VF T + S + + Sbjct: 387 QQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVFDTMLESYVFNSV 445 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164 ++H + + LG K D A L+ Q+ YAA D L Sbjct: 446 ASRHDMDGLAIKYLGH---KNIGFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLH 502 Query: 165 LQFTEKLQRL 174 +L++ Sbjct: 503 QHLWPRLEKE 512 >gi|268573488|ref|XP_002641721.1| C. briggsae CBR-MUT-7 protein [Caenorhabditis briggsae] Length = 896 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 25/161 (15%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNL------VGMLVDEKREKIFHYGRFDIAVL-- 89 ++ I+QL D + + + ++ P+L G+ K + I R D+ + Sbjct: 448 KIAIIQLFFKDKVLLVDCVELEKEKVPDLLWERFAKGLFETPKLKLIGFDMRNDLEAIIE 507 Query: 90 ---------------FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 Y + I + L D + LLG + K Sbjct: 508 LPALKGRLNLEQIKNAYDLKRLAENICD--IDMDILELPKKTFKLADLTQYLLGQVLDKT 565 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 +Q S+W L +Q+ YAA D V + + EK Q Sbjct: 566 EQCSNWQCRPLRKKQILYAALDAVVVVNTFKKILEKTQERN 606 >gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B] gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B] Length = 935 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 61/184 (33%), Gaps = 29/184 (15%) Query: 18 RYVDAIAVDTETLGLMPRRD-----RLCIV--QLS---------PGDGTVDIIRIAAGQ- 60 R +AVDTET GL LC+V Q D +A GQ Sbjct: 345 REHGYVAVDTETTGLNEMIADLVGICLCVVPGQACYVPLTHKAGNSDDLFGSDDLAEGQM 404 Query: 61 ---KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D+ KI ++D + G+ + P+ T + S + H Sbjct: 405 PLETALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDITPIDDTMLLSYALHGGMHGH 463 Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G+ + L + + + + + D YAA D L QF + Sbjct: 464 GMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVPIDDA-TPYAAEDADITLRLWQQFKPQ 522 Query: 171 LQRL 174 L + Sbjct: 523 LHQK 526 >gi|228471306|ref|ZP_04056112.1| 3- 5 exonuclease domain protein [Porphyromonas uenonis 60-3] gi|228306948|gb|EEK16046.1| 3- 5 exonuclease domain protein [Porphyromonas uenonis 60-3] Length = 206 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 9/163 (5%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 A A I +DTE+ + + +R + ++QLS + + RI P L G+ Sbjct: 33 SAVAALEQCAIIGMDTESKPVFKKYERQSVALIQLSS-ESCCYLFRINKIGI-PPRLQGL 90 Query: 70 LVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELL 127 L E K+ D L + + + RLT Y + GL+ L Sbjct: 91 LEREDILKVGLDLCGDRRQLRRFSPELHPQGFVDLQ---RLTPAYGIHDLGLQKIYAILF 147 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 ISK Q S+W A L+ Q YAA D + + + Sbjct: 148 AEKISKRAQLSNWEAATLTPAQQSYAALDAYACLRIYHRLESE 190 >gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13] gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13] Length = 901 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 16/177 (9%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---------VGMLVDEKR 75 +DTET L RL V L+ G I + + P L + +E Sbjct: 329 LDTETDSLNFMEARLVGVSLAYQAGKACYIPLQHQDMSIPQLPLNLVLNKIKSITENENI 388 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ ++D+ VL P+ T I S + + T HG+ K+ L + + Sbjct: 389 TKVGQNIKYDMHVLKNYDVTFKGPIEDTMIMSYVIDS-TESHGMDKLAKKYLDHDCISFE 447 Query: 136 QSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 L+ +Q+ YA+ D L +K+ + + Sbjct: 448 SVVGKGVKQLTFDQVSIDDAYLYASEDADVTLQLYEHLNKKIIADSKLNYIYKEIEI 504 >gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum] Length = 1016 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 70/219 (31%), Gaps = 39/219 (17%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRI--------- 56 AR +A DTET L + L L+ D T D + + Sbjct: 410 ADARATGLVAFDTETTSLDAMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVGDL 469 Query: 57 ---------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 + P L +L DE K+ ++D +L +G+ R T + S Sbjct: 470 LGGGLADNQIPMRDALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETRSFDDTMLIS 528 Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159 + T HG+ ++ LG K S +++ D YAA D Sbjct: 529 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GKANVTFDLVDIDRATHYAAEDADV 586 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L L +L G + + L A ++ G Sbjct: 587 TLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 625 >gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185] gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185] Length = 935 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 26/208 (12%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E ++ A A + + +AVDTET L L + + G + + AP Sbjct: 340 LTEAELDAWIAKLKKANLMAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAP 399 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L D K +K+ ++DI++L G++++ V F T + S + + Sbjct: 400 TQIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAFDTMLESYVFNSV 458 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167 ++H + + LG ++ + A L+ Q+ YAA D L Sbjct: 459 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHL 518 Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195 +L++ + + EL L Sbjct: 519 WPRLEKE-------AELAAMFTEVELPL 539 >gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ] gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ] Length = 888 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 69/219 (31%), Gaps = 36/219 (16%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + D+ A A DTET GL PR L + +S I + P Sbjct: 295 LTNEDLEKLALRLEAAPAFAFDTETTGLDPRTAELVGISISLQAHEAFYIPVGHRYLGMP 354 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 + L + K+ +FD+ +L G+ V+ + T + S L Sbjct: 355 DQLPRETVLERLRPAFGNPAIRKVGQNLKFDLQILAVA-GLEVQGSWCDTMLCSYLLNPS 413 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLS--------------DEQLQYAASDVVH 159 HGL +E L + S D+++ ++ +YAA D Sbjct: 414 RGGHGLDALAQEHLNHKMI--------SYDEVTGSGKNRICFSEVEVEKATRYAAEDADA 465 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L + L+ G L + ++ G Sbjct: 466 TWLLHEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHG 504 >gi|260592844|ref|ZP_05858302.1| 3'-5' exonuclease domain protein [Prevotella veroralis F0319] gi|260535214|gb|EEX17831.1| 3'-5' exonuclease domain protein [Prevotella veroralis F0319] Length = 220 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 12/157 (7%) Query: 21 DAIAVDTETLGLMP-----RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 D I VDTET P R ++ ++Q + G + + L D Sbjct: 46 DIIGVDTET---RPVFKKGHRRKVALLQACDHEVCFLFRLNYIGFPDC--IKRFLEDTTV 100 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ D+ +L + + + L+ + I+K Q Sbjct: 101 PKVGLSLSDDMLMLHQRANFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFHERITKRQ 158 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 Q S+W + L+D+Q YA++D L + E + Sbjct: 159 QLSNWENEVLNDKQKLYASTDAWTCIKLYERLHEMKE 195 >gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2] gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2] Length = 1000 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 67/199 (33%), Gaps = 28/199 (14%) Query: 9 GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---------- 57 ++ A CA A+ +A DTET L P + L V L+ I +A Sbjct: 398 AELKAWCAKAQDQGLLAFDTETNSLDPMQADLVGVSLALSPNEACYIPLAHTGAGDGLFS 457 Query: 58 --------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 + L G+L D+ K+ H ++D VL G+ V P CT S Sbjct: 458 EGQLPGQIPVRDAIAALKGVLEDKGTLKVGHNVKYDQLVLARH-GIDVAPFDCTMCMSYA 516 Query: 110 TRTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 N HG+ + LG K + + L YAA D Sbjct: 517 LDAGKNGHGMDELSVLHLGHQPIAFSEVTGKGKGKVTFDKVALEPA-THYAAEDADVTLR 575 Query: 163 LRLQFTEKLQRLGRSDLAT 181 L +L GR+ + Sbjct: 576 LWQVLKPRLAAEGRTTVYE 594 >gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] Length = 932 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRDWVLAQL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD ++L + +R + F T + S + + +H + + Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-DINLRGIAFDTMLESYVLNSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKQ 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPVLSRIERTG 547 >gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] Length = 952 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 + +++DTET G P L + S + + + A + A + +E Sbjct: 378 TEILSIDTETTGTEPMEAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFRPLYENENS 437 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL GV+V+ +F T +A + + +H + + L I+I Sbjct: 438 MKVGQNIKYDMIVLQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLRYRTIHI 495 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ S DL E + +YA D L+ ++L++ L Sbjct: 496 DELIGSRGKNQK----SMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAEHLFYEI 551 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 552 EMPLVPVLVNIESNG 566 >gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] Length = 932 Score = 67.7 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D A DTET GL + L + + G + +A +AP L Sbjct: 349 LKKADVFAFDTETDGLDTLSNNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLATL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD ++L G+ +R + F T + S + + +H + + Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIAFDTMLESYVLNSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YA+ D L L KLQ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYASEDADVTLQLHLVLWPKLQESEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERTG 547 >gi|302674116|ref|XP_003026743.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8] gi|300100427|gb|EFI91840.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8] Length = 297 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 6/124 (4%) Query: 48 DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP------VF 101 DG V + L+ ML D K+ + D +L F V V ++ Sbjct: 92 DGVVIAFDLLVLAGVPARLIEMLRDPNIIKVGVELKGDSILLLRHFAVPVHNGWEISQLW 151 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 + S T L D + +LG+ + K QQ+SDWSA LS EQ++Y+ D L Sbjct: 152 KSMHPSIEVAPLTTHISLDDMARIVLGVKVDKLQQTSDWSAPALSVEQIEYSYLDAYILV 211 Query: 162 ALRL 165 + Sbjct: 212 PIMH 215 >gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222] gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222] Length = 940 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 68/197 (34%), Gaps = 30/197 (15%) Query: 4 IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----- 56 I + + + AE A +A+DTET GL + L V L G G + + Sbjct: 334 ITIRDEAVLAEWLAEIAEKGVVAIDTETTGLDEMQAELVGVSLCTGPGRAAYLPLGHVDG 393 Query: 57 ----------AAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102 GQ + L +L D KI ++D VL G+R+ P+ Sbjct: 394 AADLFGSGARVEGQMDLDRALAMLKPVLEDPSVLKIGQNIKYDWKVLARH-GIRMVPLDD 452 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAAS 155 T + S + HG+ + LG I + ++S + +YAA Sbjct: 453 TMLLSYAQNAGAHNHGMDELADLYLGHRCLPIKDLIGSGKSQINFSQVAIDKA-SEYAAE 511 Query: 156 DVVHLHALRLQFTEKLQ 172 D L KL Sbjct: 512 DAEVTWRLWRHLRPKLA 528 >gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1] gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1] Length = 922 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 25/190 (13%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E + A + IAVDTET L L + + G + +A AP Sbjct: 327 LTETQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAP 386 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTY 113 L +L D+K +K+ ++DI+VL G++++ VF T + S + + Sbjct: 387 QQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVFDTMLESYVFNSV 445 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164 ++H + + LG K D A L+ Q+ YAA D L Sbjct: 446 ASRHDMDGLALKYLGH---KNIGFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLH 502 Query: 165 LQFTEKLQRL 174 +L++ Sbjct: 503 QHLWPRLEKE 512 >gi|109084066|ref|XP_001108902.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 3 [Macaca mulatta] Length = 495 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 8/132 (6%) Query: 44 LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G +IR+ G+ L+ +L D K+ D + L +G+ VR Sbjct: 1 MASPSGLCVLIRLPKLICGGKTLPRTLLNILADGTILKVGVGCSEDASKLLQDYGLVVRG 60 Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155 + + R N LK + +L + K+ + S+W A+ L+++Q+ YAA Sbjct: 61 CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120 Query: 156 DVVHLHALRLQF 167 D AL L Sbjct: 121 DAQISVALFLHL 132 >gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] Length = 1036 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 62/177 (35%), Gaps = 23/177 (12%) Query: 22 AIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM---LVDEKR 75 ++ DTET GL R L + + D I + L + D Sbjct: 468 PVSFDTETTGLDVRSATIVGLGL---AIRDHHAWYIPFNSDLDKEEILKEIKPFFADSS- 523 Query: 76 EKIF-HYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130 K F +FD+ +L + G+ V+ + F T +AS + H L L Sbjct: 524 LKFFAQNAKFDLQML-HYAGIEVKNIDFDTLVASFICNPSRQFHDLDSLSLHYLNYRKIS 582 Query: 131 ----ISKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 I K ++ S DL E++ Y DV LR + +L R +L Sbjct: 583 TESLIGKGKKQI--SMADLPVERVATYCCEDVDITLRLRNELEAELHRRDLRNLFDE 637 >gi|154344909|ref|XP_001568396.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134065733|emb|CAM43507.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 412 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 40/182 (21%) Query: 13 AECAARYVDAIAVDTET--LGLMPRRDRLC---IVQLSPGDGTVDIIRIAAGQKNAP--- 64 A + IA+D E + +L +VQ D++ + Sbjct: 95 AVGVLQRSRQIAIDIEAFCTSEATKTPQLGRVSLVQTCS-----DVVPVVFLFDVLSLSV 149 Query: 65 -----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTYTN 115 + + DE K+F R DI L + + V ++ A + R+ Sbjct: 150 HIFTQAIRPVFNDETIRKLFFDCRRDIEALSTQMSLVPKRVLDLQLLFTAVQWKLRSVNR 209 Query: 116 QHGLKDNLKELLGINISKAQQSSD--------------WSADDLSDEQLQYAASDVVHLH 161 + G+ LK + GI+ +Q D W L + L+YAA DV H+H Sbjct: 210 RSGMTYVLKSVAGIH----RQEGDFAVQTAMVVGDRPVWDTRPLPEHFLEYAADDVRHIH 265 Query: 162 AL 163 L Sbjct: 266 LL 267 >gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] Length = 932 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 349 LKKSEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLATL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ +FD ++L G+ +R + F T + S + + +H + + Sbjct: 409 KPLLEDEKALKVGQNLKFDQSMLARY-GIELRGIAFDTMLESYVLNSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YA+ D L L KLQ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEEAGPYASEDADVTLQLHLVLWPKLQESEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERTG 547 >gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] Length = 941 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET P L + S + + + A ++ A + +E Sbjct: 368 TKILSIDTETTSAEPMEAELVGMSFSDTENQAYYVPVPAEREEALKIVNEFRPLYENETS 427 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++DI VL G+ V+ +F T IA + + +H + + L I+I Sbjct: 428 MKVGQNIKYDILVLQNY-GMEVKGELFDTMIAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 485 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DL E++ +YA D L+ E+L++ G L Sbjct: 486 DELIGPRGKNQK----NMRDLPPEEVYKYACEDADVTLKLKNVLEEELKKQGVEHLFYEI 541 Query: 183 CCNFLMDRAELDLLG 197 + A L+ G Sbjct: 542 EMPLVRVLANLESNG 556 >gi|194226455|ref|XP_001915839.1| PREDICTED: similar to Werner syndrome ATP-dependent helicase [Equus caballus] Length = 1478 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 6/135 (4%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 DR+ ++QL + + I++ L +L ++ +K+ D L F ++ Sbjct: 95 DRVALIQLCVSESKCYLFHISSMSVFPQGLKMLL-NKAIKKVGVGIEGD-QWLLRDFDIK 152 Query: 97 VRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYA 153 ++ T +A+ + L +K L G + K+ + SDW+ L+++Q YA Sbjct: 153 LKSFVELTDVANEKLKC-AEIWSLNGLVKHLFGKQLLKDKSVRCSDWNNFPLTEDQKLYA 211 Query: 154 ASDVVHLHALRLQFT 168 A+D + + Sbjct: 212 ATDAYAGFIIYRKLE 226 >gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703] Length = 612 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 29 LKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQL 88 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD ++L G+ +R + F T + S + + +H + + Sbjct: 89 KPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 147 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 148 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 207 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 208 VFQEIEMPLLPILSRIERTG 227 >gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273] gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273] Length = 945 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 15/192 (7%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEK 74 D IAVDTET L L + +S I A + L +L + Sbjct: 370 QTDKIAVDTETTSLDTFEAELAGISISAEPAKARFISFAGTGLDRGRSIEILRPLLENPA 429 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K ++DI VL G+ + PV F T +AS + +H L D L + +K Sbjct: 430 IPKTGQNLKYDILVLKNY-GLELGPVGFDTMLASYVLDPDG-KHNLDDMAALHLRLKTTK 487 Query: 134 AQQSSDWSADDL------SDEQLQYAASDVVHLHALRLQFTEKLQRLGR-SDLATS-CCN 185 + + + L + YA D L FT L+ R +L + Sbjct: 488 YDELTGTGKNRLHIYDVEPAKLTDYACQDADLALQLEGAFTRNLEAEPRLMELCQTIEFP 547 Query: 186 FLMDRAELDLLG 197 + A+++ G Sbjct: 548 LVSVLAKMEHQG 559 >gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331] gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331] Length = 902 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 18/199 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 A DTET + +L V + + + AP L Sbjct: 320 LADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKEEVLREL 379 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D + I ++D VL + T +AS + + + +H L + Sbjct: 380 KPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKY 439 Query: 127 LGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 LG + K + + +S D+ YAA D L + +++ Sbjct: 440 LGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKV 499 Query: 181 --TSCCNFLMDRAELDLLG 197 + ++++ G Sbjct: 500 FEQIEMPLVPILMQMEMRG 518 >gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] Length = 931 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 58/180 (32%), Gaps = 29/180 (16%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV------------- 67 +AVDTET GL L + L G I + +L Sbjct: 344 GYVAVDTETTGLDEMVAELVGISLCVQPGKACYIPLIHKTHTGDDLFGSEDLAEGQIPTE 403 Query: 68 -------GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 ML D KI ++D + G+ V P+ T + S + + HG+ Sbjct: 404 EALRMLTPMLEDPSIMKIGQNMKYDSKIFAQ-LGITVAPIDDTMLLSYVMHAGLHGHGMD 462 Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + LG + + + + L+ + YAA D L F +L R Sbjct: 463 ALSERYLGHTPIPIKPLLGSGKSAVTFDKVPLAQA-VPYAAEDADITLRLWQLFKPQLHR 521 >gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] Length = 918 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 26/203 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L R+ V + G + AP L Sbjct: 335 LKVAPLFAFDTETTSLDYMEARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLTEAVVLGKL 394 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D R K+ ++D VL + ++ + + T + S + + ++H + K Sbjct: 395 KPLLEDPTRLKVGQNLKYDRNVLLNH-DIDLQGIAYDTMLESYVLNSTASRHDMDSLAKR 453 Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL-G 175 LG+ D L+ Q++ YAA D L +L+ + G Sbjct: 454 YLGVE---TTSFEDIAGKGVKQLTFNQIELEQAAPYAAEDADITLRLHQTLWGQLEAVPG 510 Query: 176 RSDLATS-CCNFLMDRAELDLLG 197 + + L A ++LLG Sbjct: 511 LCQVFSEIELPLLPVLARMELLG 533 >gi|315608200|ref|ZP_07883192.1| 3'-5' exonuclease domain protein [Prevotella buccae ATCC 33574] gi|315250169|gb|EFU30166.1| 3'-5' exonuclease domain protein [Prevotella buccae ATCC 33574] Length = 215 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 15/168 (8%) Query: 20 VDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 D + DTET + + ++ ++Q++ D + G +++ +L D +K Sbjct: 45 SDILGFDTETKPVFRRGQHSKVALLQVANRDACILFRLNYTGMT--SDIIRLLEDNTVKK 102 Query: 78 I---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK 133 I +H DI L +V + I L L+ L ISK Sbjct: 103 IGLSWHD---DILSLQRRKPFQVGSFIDLQDIVGDL---GIEDRSLQKLYANLFQEKISK 156 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 Q+ ++W AD L D Q QYAA+D L + E+L+R G +L Sbjct: 157 NQRLTNWEADVLKDSQKQYAATDAWTCIKLYEEI-ERLKRTGDYELIK 203 >gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4] gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4] Length = 949 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 17/191 (8%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEKRE 76 ++ DTET GL L + +G + + + +++ E Sbjct: 377 KSVCFDTETTGLDMFTSDLVGMSFCFAEGEAYYVSLPEDKTESKEVLREFKAFFENDRIE 436 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI----- 131 KI +FD+ +L+ +F T IA L + +HG+ + L Sbjct: 437 KIGQNMKFDLLMLWQYGIELKGKLFDTMIAHYLVQPEL-RHGMDYLAEIYLNYRTIHFED 495 Query: 132 ---SKAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186 +K + +D + ++ YAA D L+ ++L+ +L Sbjct: 496 LVGAKGKNQAD--IRTVDINKLCDYAAEDADVTFRLKQILEKELKADALENLFYEIEMPL 553 Query: 187 LMDRAELDLLG 197 + A ++ G Sbjct: 554 MQVLATMEHTG 564 >gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] Length = 902 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 18/199 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 A DTET + +L V + + + AP L Sbjct: 320 LADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKEEVLREL 379 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D + I ++D VL + T +AS + + + +H L + Sbjct: 380 KPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKY 439 Query: 127 LGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 LG + K + + +S D+ YAA D L + +++ Sbjct: 440 LGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKV 499 Query: 181 --TSCCNFLMDRAELDLLG 197 + ++++ G Sbjct: 500 FEQIEMPLVPILMQMEMRG 518 >gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493] gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493] Length = 902 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 18/199 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 A DTET + +L V + + + AP L Sbjct: 320 LADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKEEVLREL 379 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D + I ++D VL + T +AS + + + +H L + Sbjct: 380 KPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKY 439 Query: 127 LGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 LG + K + + +S D+ YAA D L + +++ Sbjct: 440 LGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKV 499 Query: 181 --TSCCNFLMDRAELDLLG 197 + ++++ G Sbjct: 500 FEQIEMPLVPILMKMEMRG 518 >gi|145546781|ref|XP_001459073.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426896|emb|CAK91676.1| unnamed protein product [Paramecium tetraurelia] Length = 403 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%) Query: 8 EGDIPAECAAR--YVDAIAVDTETLGLMPRR------DRLCIVQLSPGDGTVDIIRIAAG 59 E + E +DTE+ +P+ +++C++Q++ I +A Sbjct: 230 EAQLTDEIIEEILNAPQTGIDTESFQEIPQTKFTSRMNKVCLLQIALPQKIF--ILNSAN 287 Query: 60 QKNAPNLVGML---VDEKREKIFHYGRFDIAVLF---YTFGVRVRPVFCTKIASRLTRTY 113 ++ L KI R D L GV++ + +++ + + Sbjct: 288 LTSSCKYQQFLVKYATSNALKIGQNLRQDFLSLLGQIRASGVQLNQII--ELSELFQQKF 345 Query: 114 TN--QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV---VHLHALRLQ 166 + L +LLG + K +Q S+W L + Q+ YAA D +HL+ L Q Sbjct: 346 PQEKKTNLSFQCSKLLGKELDKVEQISNWQRRPLRNAQIHYAALDAYICLHLYNLYKQ 403 >gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] Length = 899 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 25/207 (12%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRI--------AAGQKN 62 A + D +A+DTET L P L C Q + GD + + Q Sbjct: 313 LALKAADVVALDTETTSLDPLHADLVGISCAWQ-AGGDYQAVYVPVGHRDAGPQLDRQTV 371 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKD 121 L L D + K+ ++D V + G+ + T + S + + N H L Sbjct: 372 LTALRPWLEDPQAAKLAQNAKYDWRVFWRH-GIHPAGLARDTLLESYVLNSSHNGHDLDT 430 Query: 122 NLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + L + K + + +++ +++ L YAA D + + Sbjct: 431 LAERYLQHQNIRYEEVVGKGKSARNFADVPVAEA-LPYAAEDADVCLRVDALLWPRFASE 489 Query: 175 G--RSDLATSCCNFLMDRAELDLLGWE 199 R L ++ A ++ G + Sbjct: 490 PGLRRVLMEIEMPLVLVLARMEEAGVK 516 >gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619] gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619] Length = 915 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 18/176 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 R A DTET L ++ +L + + + +A + AP L Sbjct: 330 LRQAPLFAFDTETTSLDAQKAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLAL 389 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 +L D +EK+ ++DI +L ++++ V + T + S + + +H + + Sbjct: 390 KPLLQDPAKEKVGQNAKYDINILANGSPAIQMQGVAYDTMLESYVLNSTATRHDMDSLAQ 449 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 + L + + A L+ Q+ YAA D L +L + Sbjct: 450 KYLDHATIAFEDIAGKGAKQLTFNQIHLDKAGPYAAEDADITLRLHQALQARLAQT 505 >gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506] gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506] Length = 981 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 65/198 (32%), Gaps = 35/198 (17%) Query: 14 ECAARYVD--AIAVDTETLGLMPRRD------------RLCIVQLS--PGDGTV-----D 52 E AR D +AVDTET GL P + C V LS GD + Sbjct: 383 EWVARAFDLGFVAVDTETTGLDPMQADIVGFSLATAPNEACYVPLSHKGGDEGLFSEGLL 442 Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 +I A + ++ KI ++D +L G+ + P T + S + Sbjct: 443 PDQIPIPDAVA-AIKPLMEHPGVLKIGQNLKYDWLILKR-LGIELGPYDDTMLVSYVLDA 500 Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + HG+ LG K Q D D+ YAA D L Sbjct: 501 GASPHGMDPLSMRWLGHTPIKFEEVCGKGKGQICFD---RAAIDKATDYAAEDADVTLRL 557 Query: 164 RLQFTEKLQRLGRSDLAT 181 +L G++ + Sbjct: 558 WRVLKPRLAAEGKTTVYE 575 >gi|304410319|ref|ZP_07391938.1| 3'-5' exonuclease [Shewanella baltica OS183] gi|307301970|ref|ZP_07581728.1| 3'-5' exonuclease [Shewanella baltica BA175] gi|304351728|gb|EFM16127.1| 3'-5' exonuclease [Shewanella baltica OS183] gi|306914008|gb|EFN44429.1| 3'-5' exonuclease [Shewanella baltica BA175] Length = 316 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 12/143 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 + + DTET +R L ++Q++ D + + A + L +L Sbjct: 128 LQAEQVLGFDTET---RASFERGVQHPLSLIQIATAD-ACYLFQHAILGEQFTQLKTVLE 183 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 DE K+ R D L +G+ V A G + + LLG I Sbjct: 184 DENILKVGVGLRSDAQALKRQWGINVASKLDLNWALAQLGAEKE-MGTRQLVATLLGTRI 242 Query: 132 SK--AQQSSDWSADDLSDEQLQY 152 K S+W LS Q+ Y Sbjct: 243 DKPKKITLSNWQHVPLSGAQINY 265 >gi|159465862|ref|XP_001691139.1| hypothetical protein CHLREDRAFT_180814 [Chlamydomonas reinhardtii] gi|158270331|gb|EDO96190.1| predicted protein [Chlamydomonas reinhardtii] Length = 284 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 15/173 (8%) Query: 7 HEGDIPAECAARYVD-AIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKN 62 H D A D IA+D E R + +VQL+ V + A G Sbjct: 75 HVEDALLRLRASMTDRVIAIDLE-WRPETVAGRSSPVALVQLASATTCVLLRVSAMGYIL 133 Query: 63 APNLVGMLVDEKREKIFHYG--RFDIAVLFYTFGV---RVRPVFCTKIASRLTRTYTNQH 117 + L D I +G D A + TFG+ R R + +R + + Sbjct: 134 PAPVTAFLSDPSLV-ILGFGWDGADEAKMKSTFGIGKARFRRFIDLQEVARTLGYHG--Y 190 Query: 118 GLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 GL +++LG+ + SK+ S+W+A L+ QL+YA+ DV+ L Sbjct: 191 GLARLTRQVLGVPLHKSKSVSRSNWAAPQLTAHQLKYASLDVLAAGQLFRALR 243 >gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541] gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541] Length = 934 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 64/199 (32%), Gaps = 22/199 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 A DTET L + RL + + G + I +AP + + Sbjct: 353 ASLFAFDTETDSLDTQEARLVGMSFAIEAGHAAYLPIGHDYLDAPVQLSLDDVIAVMKPI 412 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNLKEL 126 L +EK KI ++D VL G+ ++ + F T + S + +H + Sbjct: 413 LENEKIGKIGQNLKYDAEVLENY-GIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRH 471 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L ++ + L+ Q+ YAA D L +L+ + Sbjct: 472 LNHKTVSFEEIAGKGKKQLTFNQIPLEQAANYAAEDADVTLLLHQALFPQLEEEPKLAHV 531 Query: 181 TS--CCNFLMDRAELDLLG 197 + ++ G Sbjct: 532 FQNIEMPLVPVLVRMERKG 550 >gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] Length = 902 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 18/199 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 A DTET + +L V + + + AP L Sbjct: 320 LADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHEAAYVPLWHDYTGAPAQLDKEEVLREL 379 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D + I ++D VL + T +AS + + + +H L + Sbjct: 380 KPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKY 439 Query: 127 LGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 LG + K + + +S D+ YAA D L + +++ Sbjct: 440 LGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKV 499 Query: 181 --TSCCNFLMDRAELDLLG 197 + ++++ G Sbjct: 500 FEQIEMPLVPILMQMEMRG 518 >gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1] Length = 897 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T + D+ AE D+ A DTET L L + +G I + Sbjct: 304 TTQTQLDDLIAEL--EKSDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P L + D K+ K+ H +FD VL V T I + + ++ Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421 Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157 +H + KE LGI K QQ+ D Q+ YAA D Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471 Query: 158 VHLHALRLQFTEKLQR 173 L F L++ Sbjct: 472 DITFRLFNHFKALLEQ 487 >gi|288925838|ref|ZP_06419769.1| 3'-5' exonuclease domain protein [Prevotella buccae D17] gi|288337493|gb|EFC75848.1| 3'-5' exonuclease domain protein [Prevotella buccae D17] Length = 212 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 15/168 (8%) Query: 20 VDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 D + DTET + + ++ ++Q++ D + G +++ +L D +K Sbjct: 45 SDILGFDTETKPVFRRGQHSKVALLQVANRDACILFRLNYTGMT--SDIIRLLEDRTVKK 102 Query: 78 I---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK 133 I +H DI L +V + I L L+ L ISK Sbjct: 103 IGLSWHD---DILSLQRRKPFQVGSFIDLQDIVGDL---GIEDRSLQKLYANLFQEKISK 156 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 Q+ ++W AD L D Q QYAA+D L + E+L+R G +L Sbjct: 157 NQRLTNWEADVLKDSQKQYAATDAWTCIKLYEEI-ERLKRTGDYELIK 203 >gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp. novicida GA99-3549] gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549] gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] Length = 897 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T + D+ AE D+ A DTET L L + +G I + Sbjct: 304 TTQTQLDDLIAEL--EKSDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P L + D K+ K+ H +FD VL V T I + + ++ Sbjct: 362 VPQQLELGFVLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421 Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157 +H + KE LGI K QQ+ D Q+ YAA D Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471 Query: 158 VHLHALRLQFTEKLQR 173 L F L++ Sbjct: 472 DITFRLFNHFKALLEQ 487 >gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234] gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234] Length = 1040 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 60/209 (28%), Gaps = 64/209 (30%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA---------- 57 AR DTET L P R LC V L+ D + D + + Sbjct: 438 AREAGLFGFDTETTSLDPMRADLCGVSLAIADYSNDPMGGTIRAAYVPLIHKNGVGDLLG 497 Query: 58 --------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 ++ L +L D K+ ++D V+ G+ ++ T + S + Sbjct: 498 GGLVENQVPMREALSRLKNLLEDPSVLKVAQNLKYDYLVMKRH-GIAMQSFDDTMLMSYV 556 Query: 110 TRTYTNQHGLKDNLKELLG---------------------INISKAQQSSDWSADDLSDE 148 HG+ + LG ++I KA Sbjct: 557 VDAGNGMHGMDSLSERWLGHTPIPYKDIAGTGKASVSFDFVDIDKATT------------ 604 Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLGRS 177 YAA D L +L G + Sbjct: 605 ---YAAEDADVTLRLWHVLKPRLAAKGLT 630 >gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] Length = 927 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 26/215 (12%) Query: 16 AARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPN------- 65 A R+ A DTET GL LC + G + + +AP+ Sbjct: 344 AIRHAGVFAFDTETDGLDTLTANLIGLC---FAVKPGEAAYLPVGHDYLDAPDQLDRATV 400 Query: 66 ---LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L ++ D KI +FD VL F T + S + + +H + Sbjct: 401 LAALKPVMEDPTIGKIGQNLKFDRGVLKRYDIELAGIAFDTMLESYVLDSVAGRHDMDSL 460 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR--L 174 + L ++ + + L+ Q+ YAA D L + ++++ Sbjct: 461 AERFLQHTTVSFEEIAGKGRNQLTFNQIAMEQAASYAAEDADVTLRLHQKLWPRIEQAPE 520 Query: 175 GRSDLATSCCNFLMDRAELDLLGW--ENVDIFSHS 207 R + + ++ G + + +HS Sbjct: 521 LRRVFEEIEMPLVPVLSRIERTGVLIDESILAAHS 555 >gi|292617367|ref|XP_697980.4| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Danio rerio] Length = 1361 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 10/163 (6%) Query: 16 AARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 A A+ D E + ++ +VQL + + I++ P L L Sbjct: 60 ALSSGSAVGFDLEWPPSFTKGKTK--KVAMVQLCASEDKCYLFHISSMSGFPPGLKMFLE 117 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGIN 130 DE K+ D L + ++++ + + +A+ R + L +K LL Sbjct: 118 DENIMKVGVGIEGDKWKLLSDYDIKLKNIVDLSDLANEKLRC-CEKWSLDGLVKHLLKKQ 176 Query: 131 I--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K + S W L+++Q +YAA+D + + E + Sbjct: 177 LFKDKLVRCSHWDDFSLTEDQKRYAATDAYAGLLIYQKLQEMI 219 >gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] Length = 902 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 18/199 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET + +L V + + + AP L Sbjct: 320 LADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKEEVLRKL 379 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D + I ++D VL + T +AS + + + +H L + Sbjct: 380 KPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKY 439 Query: 127 LGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 LG + K + + +S D+ YAA D L + +++ Sbjct: 440 LGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKV 499 Query: 181 --TSCCNFLMDRAELDLLG 197 + ++++ G Sbjct: 500 FEQIEMPLVPILMQMEMRG 518 >gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217] gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217] Length = 936 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 30/192 (15%) Query: 11 IPAECAA-RYVDAIAVDTETLGLMPRRD------------RLCIVQLSPGDGTVD----I 53 + A AA R +AVDTET L + R C + L+ DG D Sbjct: 338 LDAWIAAIRSQGYVAVDTETTSLNEMQADLVGISLAIAPGRACYIPLTHKDGAADDLFGS 397 Query: 54 IRIAAGQ----KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 ++A GQ L +L D KI ++D + G+ V P+ T + S Sbjct: 398 DKMAEGQMPVADALAALKPVLEDHAILKIGQNMKYDAKIFAAR-GITVEPIDDTMLMSYA 456 Query: 110 TRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 + HG+ + L + + + + + + ++YAA D Sbjct: 457 LHAGLHGHGMDALSERYLMHTPIPIKSLLGSGKTAVTFDRVPVDEA-VKYAAEDADITLR 515 Query: 163 LRLQFTEKLQRL 174 L L F +L R Sbjct: 516 LWLTFKPQLHRA 527 >gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] Length = 912 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 74/216 (34%), Gaps = 22/216 (10%) Query: 5 RVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 V + D + R A A D ET L + V L+ G G + +A + Sbjct: 315 TVDDADAFDDWLRRLESAELFAFDLETSSLNYMDAEIVGVALAVGAGEAAYVPLAHEGPD 374 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 P L +L D R K+ ++D++VL + + V + T + S + Sbjct: 375 TPTQLDRDRVLAALKPLLEDPDRAKVGQNLKYDMSVLARY-DIHLEGVAYDTMLESYVLD 433 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + ++H + + LG K + A + Q+ +YA D L Sbjct: 434 STASRHDMDSLALKYLGRATVKYEDVCGKGAKQIPFAQVAVETATRYAGEDADITLRLHQ 493 Query: 166 QFTEKLQRLGRSDLA--TSCCNFLMDRAELDLLGWE 199 +L+ GR L + ++ G + Sbjct: 494 TLYPRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVK 529 >gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3] gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3] Length = 922 Score = 67.3 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 25/195 (12%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E + A + +AVDTET L L + + G + +A AP Sbjct: 327 LTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAP 386 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 L +L D K +K+ ++DI+VL VF T + S + + Sbjct: 387 QQLDKQTALEKLRPLLEDAKIKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFNSIA 446 Query: 115 NQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRL 165 ++H + + LG K D A L+ Q+ YAA D L Sbjct: 447 SRHDMDGLALKYLGH---KNIAFEDIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 503 Query: 166 QFTEKLQRLGRSDLA 180 +L++ ++LA Sbjct: 504 HLWPRLEKE--TELA 516 >gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] Length = 930 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 65/199 (32%), Gaps = 22/199 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 A DTET L + RL + + G + + +AP + + Sbjct: 349 ASIFAFDTETDSLDTQEARLVGMSFAIEPGYAAYLPLGHDYLDAPVQLPLNDVLAAMKPI 408 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNLKEL 126 L ++K KI ++D VL + ++ + F T + S + +H + + Sbjct: 409 LENDKILKIGQNLKYDAEVLLNY-DIELKGIAFDTMLESYVLNSVAGMGRHDMDSLAERH 467 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L ++ + L+ Q+ YAA D L +L+ + + Sbjct: 468 LNHKTVSFEEIAGKGKKQLTFNQIALEQAANYAAEDADVTLLLHQALYPQLEAEPKLNHV 527 Query: 181 --TSCCNFLMDRAELDLLG 197 + ++ G Sbjct: 528 FREIEMPLVPVLVRMERKG 546 >gi|310792344|gb|EFQ27871.1| 3'-5' exonuclease [Glomerella graminicola M1.001] Length = 549 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 14/145 (9%) Query: 39 LCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 + ++Q++ I AP ++ + +K+ + D + GV Sbjct: 203 VSLIQVANESRIALFHIALFPNNDFEAPTFRKIMENADVKKVGVAIKGDCTRMRTHLGVD 262 Query: 97 VRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKAQ--QSSDWSADDL 145 + +F +L + N L ++E LG+ + K +SSDWS L Sbjct: 263 TKGIFELSHLYKLVKYSANGRVGLINKRLVSLASLVQENLGLPMFKGSDVRSSDWSQ-PL 321 Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170 + Q+ Y+ASD L K Sbjct: 322 NMSQIMYSASDAYAGFQLYHVLEGK 346 >gi|15223514|ref|NP_176027.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] gi|12321757|gb|AAG50917.1|AC069159_18 3'-5' exonuclease, putative [Arabidopsis thaliana] Length = 582 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 51/190 (26%) Query: 13 AECAARYVDAIAVDTETLGLMPRR------DRLCIVQLSPGDGTVDIIRIAAGQKNAPN- 65 A + +D E P +++ I+Q+ D + I+ + +A Sbjct: 371 ATSFLEGCRVVGIDCE---WKPNYIKGSKQNKVSIMQIGS-DTKIFILDLIKLYNDASEI 426 Query: 66 ----LVGMLVDEKREKIF--------H---------------YGRF-DIAVL-FYTFGVR 96 L +L + K+ H + D+ Y + Sbjct: 427 LDNCLSHILQSKSTLKLVSLTEDYPDHKLSSGYNFQCDIKQLALSYGDLKCFERYDMLLD 486 Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 ++ VF GL K++LG++++K +++SDW LS QL+YAA D Sbjct: 487 IQNVF-----------NEPFGGLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALD 535 Query: 157 VVHLHALRLQ 166 L + Sbjct: 536 AAVLIHIFRH 545 >gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7] gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7] Length = 917 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 32/182 (17%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + IA DTET + ++ ++ V + +G + +A P+ L Sbjct: 332 LEQAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPDQLERDAVLRAL 391 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120 +L D ++ K+ + ++DI VL P+ + T + S + + +H + Sbjct: 392 KPLLEDPQKLKVGQHAKYDINVLANA----STPIAMQGVAYDTMLESYVLDSTATRHDMD 447 Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171 + LG + + D A L+ +Q+ YAA D L +KL Sbjct: 448 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 504 Query: 172 QR 173 + Sbjct: 505 EA 506 >gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] Length = 949 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 18/187 (9%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 I HE + A A DTET L RL + + G I + +A Sbjct: 353 ILTHESLARWVELLKKAPAFAFDTETDSLNNIDARLIGMSFAIEPGKAAYIPLRHEYLDA 412 Query: 64 PN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRT 112 P L +L D+ KI +FD ++ G+ + + F T + S + + Sbjct: 413 PEQLPVNDVLAALKPILEDKNILKIGQNLKFDRGIMENE-GIELNGIHFDTMLESYVLNS 471 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQ 166 +N+H + ++ L + ++ + L+ Q++ YAA D L Sbjct: 472 VSNRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQA 531 Query: 167 FTEKLQR 173 +++ Sbjct: 532 LYPQIEA 538 >gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A] gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A] Length = 971 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76 + ++DTET G P L + S + + + A + A E Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRAEAQKIVNEFRPAFEKEGVL 458 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 K+ ++D+ VL P+F T +A + + +H + + L I+I Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q+ + DLS E + +YA D L+ ++L+ L Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573 Query: 185 NFLMDRAELDLLG 197 + A ++ G Sbjct: 574 PLVPVLAYMERNG 586 >gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] Length = 971 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76 + ++DTET G P L + S + + + A + A E Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRAEAQKIVNEFRPAFEKEGVL 458 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 K+ ++D+ VL P+F T +A + + +H + + L I+I Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q+ + DLS E + +YA D L+ ++L+ L Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573 Query: 185 NFLMDRAELDLLG 197 + A ++ G Sbjct: 574 PLVPVLAYMERNG 586 >gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45] gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45] Length = 935 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 29/197 (14%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------ 57 ++ E P + +AVDTET GL L + L G I +A Sbjct: 331 VKTAEELAPWIAETQQRGWVAVDTETTGLNEMACDLVGISLCITPGKACYIPLAHRAAAT 390 Query: 58 --------------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 Q L +L D KI ++D + G+ + P+ T Sbjct: 391 DDLFGSDELAEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GIGITPIDDT 449 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASD 156 + S + HG+ + L + + + + D ++YAA D Sbjct: 450 MLMSYAMHGGLHGHGMDTLSERYLSHTPIPIKSLLGSGKSQITFDRVPVEDA-VKYAAED 508 Query: 157 VVHLHALRLQFTEKLQR 173 L F +L + Sbjct: 509 ADITLRLWTIFKPQLHQ 525 >gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 71/205 (34%), Gaps = 19/205 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + AVDTET + R R+ V + I I AP L Sbjct: 345 LKAAPRFAVDTETTSVDYRLARIVGVSFALQASEAFYIPIGHDYMGAPEQLDAKFVLDTL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L + KI + ++D V F T +AS + +HG+ D + Sbjct: 405 KPILENPAIGKIGQHMKYDAHVFNNHGISLAGWAFDTMLASYVLNPTATRHGMDDLAQYY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSD-- 178 L + +Q + A L+ Q++ YAA D L F + L ++ + + Sbjct: 465 LDYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWRLYEYFAQALAKIPKLEKL 524 Query: 179 LATSCCNFLMDRAELDLLGWENVDI 203 L E++ G +DI Sbjct: 525 LLEIEMPAAQVLYEMENNGI-RLDI 548 >gi|7595900|gb|AAF64490.1|AF241636_1 WRN protein [Mus musculus] Length = 1401 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ +K I L Sbjct: 88 RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+ + L +K +LG + K+ + S+WS L+++ Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202 Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190 Q YAA+D + + L+ + +L + L +R Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261 >gi|29429137|sp|O09053|WRN_MOUSE RecName: Full=Werner syndrome ATP-dependent helicase homolog; AltName: Full=Exonuclease WRN Length = 1401 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ +K I L Sbjct: 88 RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+ + L +K +LG + K+ + S+WS L+++ Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202 Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190 Q YAA+D + + L+ + +L + L +R Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261 >gi|2130973|dbj|BAA20269.1| WRN typeI [Mus musculus] gi|2130975|dbj|BAA20270.1| WRN typeII [Mus musculus] Length = 1401 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ +K I L Sbjct: 88 RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+ + L +K +LG + K+ + S+WS L+++ Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202 Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190 Q YAA+D + + L+ + +L + L +R Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261 >gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] Length = 931 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 69/196 (35%), Gaps = 14/196 (7%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ E D+ + A DTET L L + S G + A Sbjct: 339 TLIQDEDDLNQLAEKLGSLKEFAFDTETTSLTTLDAELVGISFSFAPGEAFFVYCAESAL 398 Query: 62 NAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116 + L +L + + KI ++D+ VL GVRV+PV F T +AS + Sbjct: 399 SRETAIRVLKPILENPEIGKIGQNLKYDMLVLKNY-GVRVQPVRFDTMLASYVLNP-DKT 456 Query: 117 HGLKDNLKELLGINISK-----AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170 H L D + LG+ K + S+ S ++ + L YA D L+ + Sbjct: 457 HNLDDLAADHLGLETVKYADLVGKGKSEKSIYEVEPKTLSDYACQDADVALQLKNVLEKA 516 Query: 171 LQRLGRSDLATSCCNF 186 L F Sbjct: 517 LGENEPLKKICEELEF 532 >gi|254883500|ref|ZP_05256210.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254836293|gb|EET16602.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 216 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 14/169 (8%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + VDTE ++ ++Q+S D + P+ + Sbjct: 37 AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + KI + D L V ++ + R L+ L Sbjct: 92 EFLMSDTLKIGLSLKDDFNSLRRREDVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 G ISK+Q+ S+W AD LS+ Q YAA+D + TE L+R G Sbjct: 150 FGQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCLTE-LERTG 197 >gi|170590466|ref|XP_001899993.1| 3'-5' exonuclease family protein [Brugia malayi] gi|158592625|gb|EDP31223.1| 3'-5' exonuclease family protein [Brugia malayi] Length = 331 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L D +++LG + K +Q +W+ L EQ++YAA D L L + + +R D Sbjct: 196 LTDLCRKVLGQALDKTEQIGNWAMRPLRREQMKYAAMDGYCLLNLYNKLKIRAERDYNMD 255 Query: 179 LAT--SCCNFLMDRAE 192 C+ +++ Sbjct: 256 WTKHWKECDIAQIKSK 271 >gi|148703462|gb|EDL35409.1| Werner syndrome homolog (human) [Mus musculus] Length = 1385 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ +K I L Sbjct: 88 RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+ + L +K +LG + K+ + S+WS L+++ Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202 Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190 Q YAA+D + + L+ + +L + L +R Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261 >gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83] Length = 928 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227] gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227] Length = 928 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|303235739|ref|ZP_07322346.1| 3'-5' exonuclease [Prevotella disiens FB035-09AN] gi|302484186|gb|EFL47174.1| 3'-5' exonuclease [Prevotella disiens FB035-09AN] Length = 230 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 19/167 (11%) Query: 20 VDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 D + +D+E ++ ++Q+S D G + ++ +L D Sbjct: 52 ADILGIDSETRPVFCKGKHH--KVALLQVSTHDVCFLFRLNLIGMPSC--IIRLLEDTTV 107 Query: 76 EKI---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINI 131 K+ H D +L + + + + L+ L I Sbjct: 108 TKVGLSLHD---DFMMLHKRTDFTTGKFIDLQ---NIVQEFGIEDLSLQKLYANLFHERI 161 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +K +Q S+W A LSD+Q YAA+D + + L+ + Sbjct: 162 TKREQLSNWEAPILSDKQKLYAATDAWACIQIYERLRA-LRSTNNYE 207 >gi|294940026|ref|XP_002782641.1| hypothetical protein Pmar_PMAR021190 [Perkinsus marinus ATCC 50983] gi|239894493|gb|EER14436.1| hypothetical protein Pmar_PMAR021190 [Perkinsus marinus ATCC 50983] Length = 1103 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 22/144 (15%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +D E + Q++ D I + + + L L + ++ + Sbjct: 960 IGIDVEWSSG----PGAALFQVASEDTVYLIDMLVPEIRQSSTLFSTLR--RVRRVLGFS 1013 Query: 83 -RFDIAVL--FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 D+ + G V ++ + L+ ++ LG + K +Q S+ Sbjct: 1014 ISADLERIPQLKECG-----VIDVQV--------DKRGSLQRHVAGQLGAYLDKTEQCSE 1060 Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163 W+ LS+ Q YAA D L AL Sbjct: 1061 WADRPLSESQKNYAALDAYTLLAL 1084 >gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205] gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205] Length = 921 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 18/172 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R L ++ + +A + AP + Sbjct: 344 QQADHFAIDTETTNLDYRVAELVGFSIAFDANEAYYVPLAHDYEGAPEQLSREQVLAQIK 403 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E+ +KI H+ ++D + G+ ++ F T +AS + +HG+ D + Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH-GIIIQGWYFDTMLASYVLNAAATRHGMDDVARVY 462 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 463 LSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYAAEDAHVTYRLYEVLSSKLK 514 >gi|330955743|gb|EGH56003.1| ribonuclease D [Pseudomonas syringae Cit 7] Length = 178 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 27/48 (56%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +E+L I++ K + SDW LS+ Q+ YAA D VHL L +L Sbjct: 1 QEVLDIDLPKGETRSDWLERPLSETQISYAAEDAVHLAELFTILRPRL 48 >gi|170049331|ref|XP_001855491.1| 3'-5' exonuclease [Culex quinquefasciatus] gi|167871144|gb|EDS34527.1| 3'-5' exonuclease [Culex quinquefasciatus] Length = 489 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 19/164 (11%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDG---TVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + D E L PR ++QL+ G G ++R+ + L+ +L D K K Sbjct: 256 PFLGFDCEWLPWNPRGPIT-LLQLAGGKGSQRLCVLVRLCYDFEIPQELLDLLNDPKIIK 314 Query: 78 IFHYGRF---DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---HGLKDNLKELLGINI 131 G D L +G V+ R T+Q GL ++ L + + Sbjct: 315 ---AGVESIRDAQFLDQDYGFTVQGAID----LRFLYPQTHQQQPIGLAALAEKELHVYL 367 Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 KA S ++ LS EQ+QYAA D + L +F +K + Sbjct: 368 NKDKAITLSGFNQPILSYEQIQYAAGDAIVGANLFDKFWQKCNK 411 >gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53] gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53] Length = 936 Score = 66.9 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 28/180 (15%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPN------------ 65 +AVDTET L R L + L G I +A AG + Sbjct: 344 AGHVAVDTETTSLDEMRADLVGISLCVAAGQACYIPLAHKAGADDLFGSDARAEGQMDMA 403 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L +L D KI ++D + G+ V P+ T + S + HG+ Sbjct: 404 ACLAMLKPVLEDASILKIGQNMKYDAKIF-ALLGIAVAPIDDTMLMSYAMHAGLHNHGMD 462 Query: 121 DNLKELLGI-------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + LG + + + + + D ++YAA D L F +L + Sbjct: 463 TLSERYLGHIPIPIKPLLGSGKSAITFDRVPVDDA-VKYAAEDADVTLRLWQMFKPQLHQ 521 >gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112] gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112] gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] Length = 897 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T + D+ AE D+ A DTET L L + +G I + Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P L + D K+ K+ H +FD VL V T I + + ++ Sbjct: 362 VPQQLELGFVLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421 Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157 +H + KE LGI K QQ+ D Q+ YAA D Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471 Query: 158 VHLHALRLQFTEKLQR 173 L F L++ Sbjct: 472 DITFRLFNHFKALLEQ 487 >gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis NE061598] Length = 897 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T + D+ AE D+ A DTET L L + +G I + Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P L + D K+ K+ H +FD VL V T I + + ++ Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421 Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157 +H + KE LGI K QQ+ D Q+ YAA D Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471 Query: 158 VHLHALRLQFTEKLQR 173 L F L++ Sbjct: 472 DITFRLFNHFKALLEQ 487 >gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] Length = 930 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 19/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 IAVDTET L L + + +G + + AP L Sbjct: 350 LAQAKLIAVDTETDNLDYMSANLVGISFALENGEAAYLPLRHNYIGAPQQIDFDTALSRL 409 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L + EK+ ++D+++ G+ V+ V + T + S + + T +H + D K Sbjct: 410 KPILENPVIEKVGQNIKYDLSIFARN-GINVQGVTYDTMLLSYVLDS-TGRHNMDDLAKR 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG ++ + L+ +Q+ YAA D L+ EK+ Sbjct: 468 YLGHQTISFEEIAGKGKGQLTFDQIPLEHATTYAAEDADITMKLQQVLWEKVSEQ 522 >gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] Length = 937 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 59/185 (31%), Gaps = 29/185 (15%) Query: 18 RYVDAIAVDTETLGLM------------PRRDRLCIVQL----SPGDGTVDIIRIAAGQ- 60 R +AVDTET G R C + L D +A GQ Sbjct: 347 RERGWVAVDTETTGFDEMVVDLVGISLCVEPGRACYIPLTHKSGSSDDLFGSDDLADGQM 406 Query: 61 ---KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D + G+ V P+ T + S + H Sbjct: 407 PLQDALDLLKPVLEDNSILKIGQNMKYDAKIFARR-GIDVAPIDDTMLMSYAMHAGQHGH 465 Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G+ + L + + + + + D + YAA D L F + Sbjct: 466 GMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDA-VAYAAEDADITLRLWQLFKPQ 524 Query: 171 LQRLG 175 L + G Sbjct: 525 LHQSG 529 >gi|74227079|dbj|BAE38334.1| unnamed protein product [Mus musculus] Length = 789 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ +K I L Sbjct: 88 RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+ + L +K +LG + K+ + S+WS L+++ Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202 Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190 Q YAA+D + + L+ + +L + L +R Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261 >gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] Length = 997 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 70/219 (31%), Gaps = 39/219 (17%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA-------- 57 AR +A DTET L + L ++ D D + +A Sbjct: 391 ADARDTGLVAFDTETTSLDAMQAELVGFSMAIADNVADPTGTKIRAAYLPLAHKNGVGDL 450 Query: 58 ----------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 + P L +L DE K+ ++D +L +G+ + T + S Sbjct: 451 LGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETKSFDDTMLIS 509 Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159 + T HG+ ++ LG K S +++ D YAA D Sbjct: 510 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GRANVTFDLVDIDRATHYAAEDADV 567 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L L +L G + + L A ++ G Sbjct: 568 TLRLWLVLKPRLVAAGLTSVYERLERPLLPVLARMEARG 606 >gi|147797616|emb|CAN65003.1| hypothetical protein VITISV_023489 [Vitis vinifera] Length = 393 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 6/105 (5%) Query: 4 IRVHEGDIPAECAA----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 I H +P + R + I D E + L LCI+QL+ D + I G Sbjct: 35 IVTHASQLPKDFLVPSPVRQL-VIGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGG 92 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104 +K L K+ H + D L++ FG+++ V ++ Sbjct: 93 EKLMKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDSQ 137 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 10/80 (12%) Query: 111 RTYTNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHL 160 R+ + L GI+ + K + D W+ LS+ ++ AA DV L Sbjct: 208 RSPDDYISFVGLLADPRYCGISYLEKKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFL 267 Query: 161 HALRLQFTEKLQRLGRSDLA 180 + + E+L LA Sbjct: 268 PYIYYKMMEELNEHSLWKLA 287 >gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] Length = 897 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T + D+ AE D+ A DTET L L + +G I + Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P L + D K+ K+ H +FD VL V T I + + ++ Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421 Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157 +H + KE LGI K QQ+ D Q+ YAA D Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTVIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471 Query: 158 VHLHALRLQFTEKLQR 173 L F L++ Sbjct: 472 DITFRLFNHFKALLEQ 487 >gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] Length = 897 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T + D+ AE D+ A DTET L L + +G I + Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P L + D K+ K+ H +FD VL V T I + + ++ Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421 Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157 +H + KE LGI K QQ+ D Q+ YAA D Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471 Query: 158 VHLHALRLQFTEKLQR 173 L F L++ Sbjct: 472 DITFRLFNHFKALLEQ 487 >gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] Length = 946 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 56/169 (33%), Gaps = 19/169 (11%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGM-------LVDEKREKIFHYGRFDIAVLFYTFGVR 96 LS G + + AG K N M L + I ++D V+ Sbjct: 399 LSWKAGEAWYVPLVAGGKTVSNEKAMKAVVKKHLENPALGVIGQNLKYDYKVMARWGVRI 458 Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------INISKAQQSSDWSADDLSDEQ 149 PVF T +A+ L + + + + + LG + K SD L Sbjct: 459 ANPVFDTMVAAWLLDSASGIYNMDKLADKYLGYVTITYDQVVPKGALFSD---VPLDKA- 514 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 +QYAA D L F L + L L A+++L G Sbjct: 515 VQYAAEDADVTWRLYETFAPMLAERKMTSLMDDLEMPLLRVLADMELEG 563 >gi|156101427|ref|XP_001616407.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax SaI-1] gi|148805281|gb|EDL46680.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax] Length = 752 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 26/52 (50%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 L ++ LG N++K Q S+WS L + Q+ YAA+D L L E Sbjct: 671 SLSHLCQKFLGKNLNKQLQLSNWSRRPLMESQIHYAATDAYVLIVLERLLIE 722 Score = 35.7 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 8/76 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREK 77 I +D E + I+ ++ + I + +L + K Sbjct: 504 YIGIDVEWNR----YQKASIISVATEERIYLIDLLTVDYNYKILIHSFFKWLLENPFVCK 559 Query: 78 IFHYGRFDIAVLFYTF 93 +F+ D+ VL F Sbjct: 560 LFYNFACDMRVLNSFF 575 >gi|74196546|dbj|BAE34397.1| unnamed protein product [Mus musculus] Length = 265 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 28/178 (15%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ +K I L Sbjct: 88 RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+ + L +K +LG + K+ + S+WS L+++ Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202 Query: 149 QLQYAASDVVHLHALRLQFTEK----------------LQRLGRSDLATSCCNFLMDR 190 Q YAA+D + + L+ + +L + L +R Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKEENLPLEMKKQLNLISEEMRDLANR 260 >gi|294775292|ref|ZP_06740815.1| 3'-5' exonuclease [Bacteroides vulgatus PC510] gi|294450869|gb|EFG19346.1| 3'-5' exonuclease [Bacteroides vulgatus PC510] Length = 216 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 14/169 (8%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + VDTE ++ ++Q+S D + P+ + Sbjct: 37 AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + KI + D L V ++ + R L+ L Sbjct: 92 EFLMSDTLKIGLSLKDDFNSLRKREDVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 G ISK+Q+ S+W A+ LS+ Q YAA+D + TE L+R G Sbjct: 150 FGQKISKSQRLSNWEAEVLSEGQKLYAATDAWACVEIYNCLTE-LERTG 197 >gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 870 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|282879856|ref|ZP_06288583.1| 3'-5' exonuclease [Prevotella timonensis CRIS 5C-B1] gi|281306250|gb|EFA98283.1| 3'-5' exonuclease [Prevotella timonensis CRIS 5C-B1] Length = 215 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 19/173 (10%) Query: 19 YVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74 + VDTE ++ ++Q++ D G P++ +L + + Sbjct: 43 KQSILGVDTETRPVFRKGQSY--KVSLLQVATHDTCFLFRLNILGIT--PSIKRLLENTE 98 Query: 75 REKI---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGIN 130 + I +H D+ L + + I L L+ + Sbjct: 99 TKMIGLSWHD---DLLALHKRSDFKKGNFIDLQDIVGDL---GIKDLSLQKLYANIFRQK 152 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ISK Q+ ++W+ + LS++Q QYAA+D L + +L+ G L Sbjct: 153 ISKRQRLTNWNNETLSEKQKQYAATDAWACIQLYEEIM-RLKVSGDYQLVEVE 204 >gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36] gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36] Length = 932 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 67/200 (33%), Gaps = 33/200 (16%) Query: 7 HEGDIPAECA----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAG 59 H D A A +AVDTET GL +L V L G I + A G Sbjct: 327 HVSDTAALQAWIDRIYEFGYVAVDTETTGLDDMVAQLVGVSLCVEPGKACYIPLIHKARG 386 Query: 60 QKNA-----------------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102 + L ML D KI ++D + G+ V P+ Sbjct: 387 SDDLFGSDDLAEGQIPTEEALRLLTPMLEDHSILKIGQNMKYDSKIFAQ-LGINVAPIDD 445 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAAS 155 T + S + HG+ + L + + + + L+D ++YAA Sbjct: 446 TMLLSYAMHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADA-VKYAAE 504 Query: 156 DVVHLHALRLQFTEKLQRLG 175 D L F +L R+G Sbjct: 505 DADITLRLWQLFKPQLHRVG 524 >gi|3851581|gb|AAC72359.1| Wrn protein [Mus musculus] Length = 988 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ +K I L Sbjct: 88 RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+ + L +K +LG + K+ + S+WS L+++ Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202 Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190 Q YAA+D + + L+ + +L + L +R Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261 >gi|288800138|ref|ZP_06405597.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 299 str. F0039] gi|288333386|gb|EFC71865.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 299 str. F0039] Length = 210 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 17/175 (9%) Query: 4 IRVHEGDIPAECAARYV---DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 I V +G+ AE A Y+ + + VDTE + ++ ++Q++ D Sbjct: 26 IIVIQGEQEAERAVEYLMQQEILGVDTETRPSFSKGITH--KVSLLQVASHD---VCFLF 80 Query: 57 AAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT- 114 PN L+ +L + I D+ L + + ++ Sbjct: 81 RLNMIGLPNCLIRLLENNYIPMIGLSWNDDLLALRKRKEFKPGHFIDLQ---KIVGAIGI 137 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 L+ + G ISK Q+ S+W + L+D+Q YAA D L + Sbjct: 138 EDLSLQKLYANVFGEKISKRQRLSNWDHEVLNDKQKTYAAIDAWACIQLYEEIAR 192 >gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] Length = 941 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET P L + S + + + ++ A + +E Sbjct: 368 TKILSIDTETTSAEPMEAELVGMSFSDTENQAYYVPVPPEREEALKIVNEFRPLYENENS 427 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++DI VL GV V+ +F T +A + + +H + + L I+I Sbjct: 428 MKVGQNIKYDILVLQNY-GVEVKGELFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 485 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DL E++ +YA D L+ E+L++ G L Sbjct: 486 DELIGPKGKNQK----NMRDLPPEEVYKYACEDADITLKLKNVLEEELKKQGVEHLFYEI 541 Query: 183 CCNFLMDRAELDLLG 197 + A ++ G Sbjct: 542 EMPLVRVLANMESNG 556 >gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] Length = 924 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 60/173 (34%), Gaps = 38/173 (21%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---------- 66 AR +A+DTET L RR L V L+ G I A G + A L Sbjct: 322 ARAAGLVAIDTETDSLKARRATLVGVSLAITPGRACYIPFAHGLRKAEGLDFDGAAPPVA 381 Query: 67 ------------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 +L D K+ H +FD+ VL V PV T + S + Sbjct: 382 NIEDKAAALALLGDLLRDPGVLKVGHNLKFDLHVLANAGLSDVAPVDDTMVLSYVLDGTL 441 Query: 115 NQHGLKDNL-----------KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 + HG+ + +E+ G K + + L + YAA D Sbjct: 442 HGHGMDELAGLHLGRRTITFEEVCG----KGKGQITFDQVPLDKA-VAYAAED 489 >gi|117919429|ref|YP_868621.1| 3'-5' exonuclease [Shewanella sp. ANA-3] gi|117611761|gb|ABK47215.1| 3'-5' exonuclease [Shewanella sp. ANA-3] Length = 303 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 6/144 (4%) Query: 13 AECAARYVDAIAVDTET-LGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 A + DTET P + L +VQL+ D T + + A + L +L Sbjct: 113 ALQQLSRESVLGFDTETRASFEPGVQHPLSLVQLATSD-TCYLFQQAVLGERLAELKPLL 171 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 +E+ K+ R D L + ++V P A + G + + LL Sbjct: 172 ENEQILKVGIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGA-GKEMGTRQLVAALLHKR 230 Query: 131 ISK--AQQSSDWSADDLSDEQLQY 152 I K S+W LS Q+QY Sbjct: 231 IDKPKKITLSNWQQVPLSQAQVQY 254 >gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6] gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6] Length = 931 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 30/181 (16%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 A DTET G+ + +L V + I + P+ L + Sbjct: 343 AKLFAFDTETTGIDAHQAQLVGVSFAVQPHEAAYIPLTHAYIGVPDQLDRDTVLRALKPL 402 Query: 70 LVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121 L D + KI + +FD+ +L G+ V+ + F T + S + +H + Sbjct: 403 LEDPTKLKIGQHAKFDMNILANCAIDGDPAQGITVQGIAFDTMLESYVLNATATRHDMDS 462 Query: 122 NLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 K+ L + D A L+ +Q+ YAA D L + +L Sbjct: 463 LAKKYLDYD---TVSFQDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQELHAQLA 519 Query: 173 R 173 Sbjct: 520 A 520 >gi|321248466|ref|XP_003191137.1| hypothetical protein CGB_A0490C [Cryptococcus gattii WM276] gi|317457604|gb|ADV19350.1| hypothetical protein CNB05310 [Cryptococcus gattii WM276] Length = 935 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 54/184 (29%), Gaps = 34/184 (18%) Query: 31 GLMPR----RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD- 85 +VQL V I + P + ++ D K K+ + D Sbjct: 332 STRRYDFQQYP-TALVQLCDERMIVLI-HLQDKMDLPPKVAELVCDPKVYKLGVQSKGDG 389 Query: 86 ---IAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINISK--A 134 + + F ++ + HG L + LG + K Sbjct: 390 RKLVRDFPHHFRQYGPAGLYELSQMAHAIDPERAGHGSRLIKLATLCRAYLGRELDKNMK 449 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 ++ DW A +L++ Q YAA+DV + + LD Sbjct: 450 IRTGDW-AGELNEVQKAYAANDVFVSVQIFNALKKLADERN---------------VTLD 493 Query: 195 LLGW 198 L GW Sbjct: 494 LDGW 497 >gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 999 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 72/235 (30%), Gaps = 43/235 (18%) Query: 3 TIRVHEGDIPAE----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI----- 53 T V D+ AR +A DTET L + L L+ D T D Sbjct: 377 TAYVTIRDLATLDRWIADARATGLVAFDTETTSLDAMQAELVGFSLAIADNTADPTGTKI 436 Query: 54 ----IRIAAGQ------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFY 91 I +A P L +L D K+ ++D ++ Sbjct: 437 RAAYIPLAHKNGVGDLLGGGLADNQISMRDALPRLKSLLEDAAVLKVAQNLKYDYLLMQR 496 Query: 92 TFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS--- 146 G+ R T + S + T HG+ ++ LG K S +++ Sbjct: 497 Y-GIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GKANVTFDL 553 Query: 147 ---DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 D YAA D L L +L G + + L A ++ G Sbjct: 554 VDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 608 >gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 928 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1] gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1] Length = 929 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 59/183 (32%), Gaps = 32/183 (17%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------------------AGQK 61 +A DTET L L V L G I + Sbjct: 343 GEVAFDTETTSLNEMTAELVGVSLCIEPGAACYIPLLHRGGGDDLFADTSLAEGQIPFDD 402 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L ML D K+ ++D+ VL GV V P+ T + S + HG+ Sbjct: 403 AMEILQPMLEDRSVMKVAQNAKYDVKVLANY-GVEVAPIDDTMLLSYALHAGLHNHGMDG 461 Query: 122 NLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + LG I K+Q + D ++D YAA D F KL Sbjct: 462 LAERYLGHTPLPIKSLIGSGKSQITFD--RVPIADA-APYAAEDADITLRFHKLFKPKLH 518 Query: 173 RLG 175 ++G Sbjct: 519 QVG 521 >gi|296472380|gb|DAA14495.1| Werner syndrome [Bos taurus] Length = 707 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 19/159 (11%) Query: 21 DAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 D + D E R+ ++QL + + I++ L +L + Sbjct: 75 DVVGFDIE-------WPPFKKGTLSRVALIQLCVAESKCYLFHISSMSGFPQGLKMLLEN 127 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131 E +K D L F + ++ + T +A+ + L +K L G + Sbjct: 128 EAIKKAGVGIEQDQWKLLRDFDINLKSIVELTDVANEKLKC-IETWSLNGLVKYLFGKQL 186 Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 ++ + SDWS L+++Q YAA+D + + Sbjct: 187 LKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQKLA 225 >gi|126175491|ref|YP_001051640.1| 3'-5' exonuclease [Shewanella baltica OS155] gi|125998696|gb|ABN62771.1| 3'-5' exonuclease [Shewanella baltica OS155] Length = 315 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 12/143 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 + + DTET +R L ++Q++ D + + A + L +L Sbjct: 127 LQAEQVLGFDTET---RASFERGVQHPLSLIQIATAD-ACYLFQHAILGEQFTQLKTVLE 182 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 DE K+ R D L +G+ V A G + + LLG I Sbjct: 183 DENILKVGVGLRSDAQALKRQWGINVASKLDLNWALAQLGAEKE-MGTRQLVATLLGTRI 241 Query: 132 SK--AQQSSDWSADDLSDEQLQY 152 K S+W LS Q+ Y Sbjct: 242 DKPKKITLSNWQHVPLSGAQIDY 264 >gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18] gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] Length = 897 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T + D+ AE D+ A DTET L L + +G I + Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P L + D K+ K+ H +FD VL V T I + + ++ Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421 Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157 +H + KE LGI K QQ+ D Q+ YAA D Sbjct: 422 SG-KHDIDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471 Query: 158 VHLHALRLQFTEKLQR 173 L F L++ Sbjct: 472 DITFRLFNHFKALLEQ 487 >gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 928 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 928 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906] gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906] Length = 949 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 18/188 (9%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 +I HE + + A A DTET L RL + + G I + + Sbjct: 352 SILTHESLMRWVEVLKKAPAFAFDTETDSLNNIDARLIGLSFAVEPGKAAYIPLRHDYLD 411 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 AP L +L D+ KI +FD ++ G+ + + F T + S + Sbjct: 412 APEQLPVDEVLTALKPILEDKTILKIGQNLKFDRGIMENE-GIELNGIYFDTMLESYVLN 470 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165 + +++H + ++ L + ++ + L+ Q++ YAA D L Sbjct: 471 SVSSRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQ 530 Query: 166 QFTEKLQR 173 +++ Sbjct: 531 ALYPQIEA 538 >gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 928 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 928 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301] Length = 958 Score = 66.6 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 21/203 (10%) Query: 14 ECAARYVDAIA---------VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-- 62 E AA+ + +A DTET G DR+ + L+ + Sbjct: 371 ETAAQLREVVAAVGRYPEFCFDTETTGFDIFNDRIVGLSLAVEPFKAWYVPFLEKDTPEY 430 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKD 121 A + + DEK KI +FD+ VL G+ +R ++ T I L + +H + Sbjct: 431 AEIVRPLFEDEKIAKIGQNIKFDLMVLRR-LGITIRGRMYDTMILHYLLDPES-RHNMNA 488 Query: 122 NLKELLGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLG 175 ++ L + + + L+ + +YAA D L+ ++++G Sbjct: 489 LAEKYLNYKPIEIETLIGKGSKQLTMDLVNVERVKEYAAEDADVTLQLKQALYPMIEQIG 548 Query: 176 RSDLA-TSCCNFLMDRAELDLLG 197 L + A++++ G Sbjct: 549 LQHLYFEIEEPMIAVLADIEMAG 571 >gi|296472378|gb|DAA14493.1| Werner syndrome [Bos taurus] Length = 744 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 19/159 (11%) Query: 21 DAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 D + D E R+ ++QL + + I++ L +L + Sbjct: 75 DVVGFDIE-------WPPFKKGTLSRVALIQLCVAESKCYLFHISSMSGFPQGLKMLLEN 127 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131 E +K D L F + ++ + T +A+ + L +K L G + Sbjct: 128 EAIKKAGVGIEQDQWKLLRDFDINLKSIVELTDVANEKLKC-IETWSLNGLVKYLFGKQL 186 Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 ++ + SDWS L+++Q YAA+D + + Sbjct: 187 LKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQKLA 225 >gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 928 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 928 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 928 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12] gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12] Length = 595 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 40/200 (20%) Query: 3 TIRVHEGDIPAECAARYVDAI-------AVDTETLGLMPRRD--RLCIVQLSPGDGTVDI 53 TI V E D E A + D I AVDTET GL D R +VQ + Sbjct: 14 TINVVERD---EDLAEFRDFIRAHKHCLAVDTETTGLDIYSDTFRCRLVQFGT-QSEAWV 69 Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASR 108 + + G N++ L + + + +D+ VL + + V T+I ++ Sbjct: 70 LPVELGGGIPENVIEALYEVDKL-VMQNASYDLQVLDQIGYAAMEDLWPK-VLDTQILAK 127 Query: 109 LT-----RTYTNQHGLKDNLKELLGIN-----------ISKAQQSSD---WSADDLS-DE 148 L H L++ + E + ++K +++ WS DL E Sbjct: 128 LVDPRPFEAGGFGHSLEELIAEFIDKEQAENVKGLMTKLAKEHKTTKAKIWSTIDLFHPE 187 Query: 149 QLQYAASDVVHLHALRLQFT 168 L YA D + + + Sbjct: 188 YLTYAGMDTIFTARICSKLA 207 >gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] Length = 661 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 19/196 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVD 72 R +++DTET P L + S + + I ++ A + D Sbjct: 344 LRTNKILSLDTETTSTSPMEAELVGLSFSVKEKEAFYVAIPKDREEALQYVNIFKPLYED 403 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + K+ ++D VL GV ++ +F T +A L + +H + + LL Sbjct: 404 PEILKVGQNIKYDYVVLRNY-GVDIQGKMFDTMLAHYLIQPEL-RHNMDYMAETLLHYQT 461 Query: 132 --------SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 K + + DLS E++ +YAA D L+ +L+ +G L Sbjct: 462 MHIEELIGPKGKGQKN--MRDLSPEEIYEYAAEDADITLRLKNVLEPQLKEVGAKSLFWD 519 Query: 183 -CCNFLMDRAELDLLG 197 + A+++L G Sbjct: 520 IEMPLVKVLADMELNG 535 >gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320] gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320] Length = 932 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 18/188 (9%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 +I HE + + A A DTET L RL + + G I + + Sbjct: 335 SILTHESLMRWVEVLKKAPAFAFDTETDSLNNIDARLIGLSFAVEPGKAAYIPLRHDYLD 394 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 AP L +L D+ KI +FD ++ G+ + + F T + S + Sbjct: 395 APEQLPVDEVLTALKPILEDKTILKIGQNLKFDRGIMENE-GIELNGIYFDTMLESYVLN 453 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165 + +++H + ++ L + ++ + L+ Q++ YAA D L Sbjct: 454 SVSSRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQ 513 Query: 166 QFTEKLQR 173 +++ Sbjct: 514 ALYPQIEA 521 >gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49] gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49] Length = 949 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 72/204 (35%), Gaps = 19/204 (9%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEK 74 ++ DTET GL P L + S G I ++ A ++ +L + Sbjct: 374 KQPSVCFDTETTGLNPLTAELVGIAFSWEAGKGFYIAFPKEKEAAQEIIELLRPFFEATE 433 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130 EKI ++D+ VL V +F T +A L +H + + L Sbjct: 434 IEKIGQNLKYDLKVLRKYDIVVKGQLFDTMLAHYLINP-DMRHNMDILAETYLNYTPVSI 492 Query: 131 ---ISKA--QQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 I K Q S D+ +Q +YA D L+ F+++L L T Sbjct: 493 TELIGKKGKNQKS---MRDVPVADQTEYAVEDADITLQLKEHFSKELGEANTQKLFTDIE 549 Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207 L A ++ G F +S Sbjct: 550 VPLLRVLAAMEAEGINLDKTFLNS 573 >gi|156053686|ref|XP_001592769.1| hypothetical protein SS1G_05690 [Sclerotinia sclerotiorum 1980] gi|154703471|gb|EDO03210.1| hypothetical protein SS1G_05690 [Sclerotinia sclerotiorum 1980 UF-70] Length = 603 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 17/153 (11%) Query: 39 LCIVQLSPGD--GTVDIIRIAAG---QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 + ++QL+ + G I Q AP + ++ D + K+ D L Sbjct: 227 VSLIQLATEERVGLFHIALFPQDKVSQLVAPTMKKIMEDPEVTKVGVAISADCTRLRKYL 286 Query: 94 GVRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKA--QQSSDWSA 142 + +F RL + +Q L +++ L + + K +SSDW Sbjct: 287 DIHSVSIFELSHLYRLVKYSASQEYGLINKRLVSLAKQVEDHLHLPLFKGGSVRSSDW-T 345 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 LS +Q+ YAASD + L K Q L Sbjct: 346 RGLSIQQISYAASDSYAGYHLYNILESKRQALN 378 >gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] Length = 952 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 + +++DTET G P L + S + + + A + A L + +E Sbjct: 378 TEILSIDTETTGTEPMEAELVGMSFSDAENRAYYVPVPANRDEALKIVNELRPLYENENS 437 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL GV+V+ +F T +A + + +H + + L I+I Sbjct: 438 MKVGQNIKYDMIVLQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLQYQTIHI 495 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DL E + +YA D L+ ++L+ L Sbjct: 496 DELIGARGKNQK----NMRDLPAEDVYRYACEDADVTLKLKNVLEKELKEQSAEHLFYEI 551 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 552 EMPLVPVLVNIESNG 566 >gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18] gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18] Length = 920 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76 + +++DTET L + S + + + A + A + +K Sbjct: 348 EFVSIDTETTSTDAISAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPLYESDKIM 407 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDN-LKEL 126 KI ++D VL +F T IA L + + + ++EL Sbjct: 408 KIGQNIKYDYEVLTRYGVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLLSYQTIHIEEL 467 Query: 127 LGINISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 LG K + + DLS + +YAA D L+ +L+ LG +L + Sbjct: 468 LGPKGKKQK-----NMRDLSPTDIYEYAAEDADITLRLKNVLEPRLKELGVEELFWNIEM 522 Query: 185 NFLMDRAELDLLG 197 + A+++L G Sbjct: 523 PLVRVLADMELNG 535 >gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 928 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] Length = 929 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 67/184 (36%), Gaps = 30/184 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + IA DTET G+ ++ +L + S G + + AP L Sbjct: 338 LKGAKLIAFDTETTGIDAQQAQLVGLSFSVKAGEAAYVPLTHSYMGAPAQLDRDSVLLAL 397 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQHG 118 +L D K K+ + +FD+ +L G+ VR V F T + S + + +H Sbjct: 398 KPLLEDPKLLKVGQHAKFDMNILANCAIGGDQANGITVRGVAFDTMLESYVLNSTATRHD 457 Query: 119 LKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTE 169 + ++ L + D A L+ +Q+ YAA D L + Sbjct: 458 MDSLAQKYLDHS---TVSFQDIAGKGAKQLTFDQIPLEQAGPYAAEDADVTLRLHQVLFD 514 Query: 170 KLQR 173 KL Sbjct: 515 KLSA 518 >gi|313220402|emb|CBY31256.1| unnamed protein product [Oikopleura dioica] Length = 489 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 75/237 (31%), Gaps = 59/237 (24%) Query: 10 DIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNA 63 D P + A + + +D E L P ++ ++Q++ ++ I Sbjct: 189 DTPKDLAKVRRYIELANYLMIDQEGDQLGP-NGKITVIQINTYESPNCFLLDIKVAGDQE 247 Query: 64 PN-----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + ML D K+ K F G D A L+ ++G++V + Y +H Sbjct: 248 LVKKDGWIRQMLEDPKKIKFFWGGSSDTANLYASYGIKVASFVDLQ-----LVEYHYRHK 302 Query: 119 LKDNL------------------------KELLGINISKAQQSSD---WSADDLSDEQLQ 151 L +LL K + +D W+ L D L+ Sbjct: 303 LAHLTDGFVEPEVKTHPLGLESAYKYFTDADLLRYKADKGKHKTDHHVWARRPLPDSLLK 362 Query: 152 YAASDVVHLHALRLQFTEKLQRLGR--------------SDLATSCCNFLMDRAELD 194 YA+ DV + L F + L+ +C L ELD Sbjct: 363 YASFDVAAMRPLSHLFFKNLELWNWGKIEAAISVSTLSAWPRHRTCFACLQS-VELD 418 >gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi] gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 928 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] Length = 933 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 57/184 (30%), Gaps = 29/184 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------- 57 A +AVDTET GL L + L G I + Sbjct: 342 AHERGWLAVDTETTGLNEMVADLVGISLCIEPGEACYIPLTHRDGASDDLFGSDALAEGQ 401 Query: 58 -AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + L +L D KI ++D + GV V P+ T + S + Sbjct: 402 MPLDEALKLLKPVLEDPSILKIGQNMKYDAKIFARY-GVDVAPIDDTMLMSYAMHAGEHG 460 Query: 117 HGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 HG+ + LG + + + + + + YAA D L F Sbjct: 461 HGMDTLSERYLGHTPIPIKPLLGSGKSAITFDKVPIDEA-TAYAAEDADITLRLWKLFKP 519 Query: 170 KLQR 173 +L R Sbjct: 520 QLHR 523 >gi|170763502|ref|NP_035851.3| Werner syndrome ATP-dependent helicase homolog [Mus musculus] gi|170763504|ref|NP_001116294.1| Werner syndrome ATP-dependent helicase homolog [Mus musculus] gi|3885838|gb|AAC78077.1| Wrn protein [Mus musculus] gi|29748014|gb|AAH50921.1| Wrn protein [Mus musculus] gi|38173728|gb|AAH60700.1| Wrn protein [Mus musculus] Length = 1401 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 12/139 (8%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ +K I L Sbjct: 88 RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+ + L +K +LG + K+ + S+WS L+++ Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202 Query: 149 QLQYAASDVVHLHALRLQF 167 Q YAA+D + + Sbjct: 203 QKLYAATDAYAGLIIYQKL 221 >gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74] Length = 605 Score = 66.2 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 23 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 83 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 142 WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 >gi|156400872|ref|XP_001639016.1| predicted protein [Nematostella vectensis] gi|156226141|gb|EDO46953.1| predicted protein [Nematostella vectensis] Length = 485 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 12/154 (7%) Query: 21 DAIAVDTETL---GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKRE 76 + +D E + G++ + ++Q++ +IR+ P L G+L D Sbjct: 2 KFVGLDCEWVNKKGVLSH--PVALLQIATPLNDCFLIRLCKMSGAVPPTLKGLLEDRAVL 59 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ- 135 K D L TFG+ V R + L + LG+ + K+ Sbjct: 60 KFGVGIMDDAKKLSDTFGLAVSGCVD----LRHLVLRQGKLSLGALAQRFLGVRMDKSWH 115 Query: 136 -QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 Q S+W + LSD Q+ YAA+D + + + Sbjct: 116 VQCSNWEVEHLSDRQVAYAANDAIVAVHVFMALD 149 >gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29] gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29] Length = 607 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 31/195 (15%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGT-VDIIRIA 57 + H D+ + + + +AVDTET GL R +VQ + V I Sbjct: 16 NVVEHPEDLDGFRDFIRAHQNCLAVDTETTGLDIYSADFRCRLVQFGTQTESWVLPIEDL 75 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--- 110 + V K + +D+ VL FG+++ ++ T+I ++L Sbjct: 76 EMLGREEVHEALDVLNKI--VMQNASYDLQVLDRCFGIKMESLWPKILDTQILAKLVDPR 133 Query: 111 --RTYTNQHGLKDNLKELLGIN-----------ISKAQQSSD---WSADDL-SDEQLQYA 153 H L++ + E + ++K +++ WS DL E L YA Sbjct: 134 PFGAGGFGHSLEELIAEFISKEQAENVKGLMAKLAKEHKTTKAKIWSTIDLYHPEYLTYA 193 Query: 154 ASDVVHLHALRLQFT 168 D V + Sbjct: 194 GMDTVFTARICSALA 208 >gi|309356157|emb|CAP37848.2| hypothetical protein CBG_20916 [Caenorhabditis briggsae AF16] Length = 717 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 GL ++ LG + K +Q S W L + QL+YAA D + L + +E ++G Sbjct: 635 GLSYLCEKFLGKPLDKTEQCSVWDRRPLRNLQLRYAAMDAYCMLMLYDKCSEVFSKMG 692 >gi|268533174|ref|XP_002631715.1| Hypothetical protein CBG20916 [Caenorhabditis briggsae] Length = 714 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 GL ++ LG + K +Q S W L + QL+YAA D + L + +E ++G Sbjct: 632 GLSYLCEKFLGKPLDKTEQCSVWDRRPLRNLQLRYAAMDAYCMLMLYDKCSEVFSKMG 689 >gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1] gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1] Length = 915 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 18/176 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET GL ++ +L + + + +A + AP L Sbjct: 330 LRQAPLFAFDTETTGLDAQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVLLAL 389 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 +L D + K+ ++DI +L + +R V + T + S + + +H + + Sbjct: 390 KPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQ 449 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 + L + + A L+ Q+ YAA D L +L + Sbjct: 450 KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHQALQARLAQT 505 >gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] Length = 942 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 19/194 (9%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----MLVDEK 74 +++ DTET L L + S + Q A LV + Sbjct: 367 KQNSVCFDTETTSLKTLDAELVGIAFSWESHKGFYVAFPEDQNEAQELVEKLRPFFESTE 426 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130 EK+ ++DI VL P+F T +A + +H + + L + Sbjct: 427 IEKVGQNLKYDIKVLANYKLKVKGPLFDTMLAHYIINP-DMRHNMNILAETYLNYSPQPI 485 Query: 131 ---ISK--AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 I K +Q + +S ++Q QYA D L+ F ++L+ L Sbjct: 486 EDLIGKKGKRQKT---MRTVSLEDQTQYAVEDADITFQLKTYFEKELKEASNEPLFKDME 542 Query: 184 CNFLMDRAELDLLG 197 L A +++ G Sbjct: 543 IPLLRVLAAMEIEG 556 >gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 614 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 20/169 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET P L + S + + + + + A + +E Sbjct: 376 SKILSLDTETTETEPMDAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132 K+ ++D+ VL V P+F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLQNYGAVVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494 Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL + + YA D L+ ++L+ Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADITLKLKNVLEKELKE 539 >gi|321478345|gb|EFX89302.1| hypothetical protein DAPPUDRAFT_310282 [Daphnia pulex] Length = 438 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 62/173 (35%), Gaps = 19/173 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKR 75 + + E + +C + ++ D + G L + ++K Sbjct: 189 LEKESVVGLSMEGVRTGRF-GVVCWIGVATSDHVFLFDMCSLGSTGVNRGLANIFTNDKV 247 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----RTYTNQH--GLKDNLKELLGI 129 K+ H RF + +GV++ VF T++ + + N++ L +L ++L + Sbjct: 248 IKVIHDCRFMSDAFVHQYGVKLNNVFDTQVGALVVVKNKHGSFNRYVPSLTRSLTDILNL 307 Query: 130 ------NISK--AQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + K + D W L ++ A +V L LRL E L Sbjct: 308 PSMSMYHPRKRMGHEKEDEAIWKTRPLPQHLIEGAVFNVCWLRKLRLAIMEIL 360 >gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114] gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114] Length = 925 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 26/180 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-------- 68 A A+DTET L ++ L + L+ + + + K PNL Sbjct: 337 ADNQGYFAIDTETNSLNSQKADLVGISLAINENEAYYVPVGHKNKQDPNLKKQIKIKELV 396 Query: 69 -----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L DE +K+ ++D+ + G+ ++ T + S N+H L Sbjct: 397 KVLKPYLEDETVKKVGQNIKYDLKIFLKY-GIELKSFEDTMLLSYSLDAGVNRHNLDLLA 455 Query: 124 KELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K L + K++ + D + L D +YA D L F +++ + Sbjct: 456 KTHLDHDNIKFKDVVGTGKSEVTFD---EVLIDNAYRYACEDADVTLKLYNLFKDRIVKE 512 >gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] Length = 921 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 18/172 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R L ++ + +A + AP + Sbjct: 344 QQADHFAIDTETTNLDYRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREHVLEQIK 403 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E+ +KI H+ ++D + G+ ++ F T +AS + +HG+ D + Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH-GITIQGWYFDTMLASYVLNAAATRHGMDDVARVY 462 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L + +Q + A S Q++ YAA D + L + KL+ Sbjct: 463 LSHLTTTFEQIAGKGAKQKSFNQIELEVAAHYAAEDAHVTYRLYEVLSAKLK 514 >gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222] gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222] Length = 933 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 74/200 (37%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 350 LKAAELFAFDTETDSLDYMVANLVGLSFATDEGVAAYVPVAHDYLDAPQQLDRDWVLEQL 409 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D++VL G+ ++ + T +AS + + +H + Sbjct: 410 KPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIKHDTMLASYVFNSVGGKHDMDSLALR 468 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + L+ Q++ YAA D L + E +++ + Sbjct: 469 FLQHSCISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKT 528 Query: 180 ATSCCN--FLMDRAELDLLG 197 + + ++ G Sbjct: 529 IYEEIEVPLIPVMSRIERTG 548 >gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] Length = 921 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 18/172 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R L ++ + +A + AP + Sbjct: 344 QQADHFAIDTETTNLDYRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREHVLEQIK 403 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E+ +KI H+ ++D + G+ ++ F T +AS + +HG+ D + Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH-GITIQGWYFDTMLASYVLNAAATRHGMDDVARVY 462 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 463 LSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYAAEDAHVTYRLYEVLSAKLK 514 >gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 932 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD ++L G+ +R + F T + S + + +H + + Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEIPLLPILSRIERTG 547 >gi|294868076|ref|XP_002765369.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983] gi|239865388|gb|EEQ98086.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983] Length = 1005 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 18/143 (12%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF------YTFG 94 +VQL+ D + A + + ++ + D+ VL G Sbjct: 493 LVQLATSDNVYLVDIYAGEEGLIDEIGRLVESNNIIVVGFGIAGDLRVLRSSGMEGTRGG 552 Query: 95 VR-VRPVFCTKIASRLTRTYTN--------QHGLKDNLKELLGINISKAQQSSDWSADDL 145 V + + L Y Q GL + +K LG +SK + S+W L Sbjct: 553 VSSPHRIVD---LNDLVDGYLPSRKGSSKHQRGLTEVVKYFLGKPLSKVMRLSNWRRRPL 609 Query: 146 SDEQLQYAASDVVHLHALRLQFT 168 S Q++YA+ D + L + Sbjct: 610 SYRQVEYASLDAIVLLKCIEKIQ 632 >gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] Length = 933 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 30/211 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------- 56 AR +AVDTET L L + L+ G I + Sbjct: 342 ARERGWVAVDTETTSLNEMTADLVGISLAVEPGAACYIPLGHRDGDAGDLFGSDKLAEGQ 401 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 Q+ L ML D KI ++D + GV V P+ T + S + Sbjct: 402 LPLQQTLDLLKPMLEDPAILKIGQNMKYDAKIFARY-GVAVAPIDDTMLLSYAMHGGLHG 460 Query: 117 HGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 HG+ + L + + + + + + YAA D L F Sbjct: 461 HGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKVAIDEA-TAYAAEDADITLRLWQLFKP 519 Query: 170 KLQRLGRSDLATS-CCNFLMDRAELDLLGWE 199 +L R + + + + AE+++ G + Sbjct: 520 QLHRAQVTTVYETLERPLVPVLAEMEMHGVK 550 >gi|170596587|ref|XP_001902821.1| 3'-5' exonuclease family protein [Brugia malayi] gi|158589271|gb|EDP28335.1| 3'-5' exonuclease family protein [Brugia malayi] Length = 704 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 24/49 (48%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 GL + +LG + K +Q S W L D QL+YAA D + L + Sbjct: 623 GLSALCERVLGKPLDKTEQCSVWDRRPLRDLQLRYAALDAYCMLMLYEK 671 >gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01] gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01] Length = 937 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 74/200 (37%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 354 LKAAELFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLEQL 413 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D++VL G+ ++ + T +AS + + +H + Sbjct: 414 KPILEDDTQAKVGQNLKYDMSVLARY-GIEMKGIKHDTMLASYVFNSVGGKHDMDSLALR 472 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + L+ Q++ YAA D L + E +++ + Sbjct: 473 FLQHSCISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKT 532 Query: 180 ATSCCN--FLMDRAELDLLG 197 + + ++ G Sbjct: 533 IYEEIEVPLIPVMSRIERTG 552 >gi|224538568|ref|ZP_03679107.1| hypothetical protein BACCELL_03462 [Bacteroides cellulosilyticus DSM 14838] gi|224519812|gb|EEF88917.1| hypothetical protein BACCELL_03462 [Bacteroides cellulosilyticus DSM 14838] Length = 215 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 11/175 (6%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + +D+E ++ ++Q+S + + R+ P ++ Sbjct: 36 AVTYLKKYSLLGIDSETRPSFTKGQSH--KVALLQVSSEEDCF-LFRLNLTGLTLP-IIS 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L K+ R D +L C ++ + L+ L G Sbjct: 92 LLESPSVTKVGLSLRDDFMMLHKRAPFEQHS--CIELQEYVRMFGIQDKSLQKIYGILFG 149 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ISK+Q+ S+W A+ L++ Q QYAA+D + + E L+ G +L Sbjct: 150 EKISKSQRLSNWEAEHLTEPQKQYAATDAWACLNIYNRLQE-LKVTGDYELEPDE 203 >gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B] gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B] Length = 892 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 26/194 (13%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-GQKNAP------NLVGMLVDEKREK 77 +DTET L P +L + +S +G I ++ G KN L +L ++ Sbjct: 322 IDTETTSLDPFEAKLVGISISTMEGKAYYIPVSHFGAKNISKSLIDKFLKQILQEKDYNI 381 Query: 78 IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 + +FD + + G P F T IA+ L + L++ + LG K Sbjct: 382 VGQNLKFDYEIF-KSMGFSPNVPHFDTMIAAYLLNPDEKRFNLEELSLKYLGY---KMIS 437 Query: 137 S------------SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 +D+S L ++Y+ D + + + K+ L Sbjct: 438 FDELVNENVPLFGNDFSYVPLERA-VEYSCEDADVTYRIFRKLGRKIYENEMEKLFYEIE 496 Query: 184 CNFLMDRAELDLLG 197 + +E++L G Sbjct: 497 MPLIDVLSEMELNG 510 >gi|299140705|ref|ZP_07033843.1| 3'-5' exonuclease domain protein [Prevotella oris C735] gi|298577671|gb|EFI49539.1| 3'-5' exonuclease domain protein [Prevotella oris C735] Length = 223 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 14/156 (8%) Query: 20 VDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 D + VDTET + + ++ ++Q++ D T + R+ A + +L D K Sbjct: 45 CDILGVDTETRPTFHKGEQHKVALLQVASHD-TCFLFRLNDIGMPASV-IRLLEDRTVPK 102 Query: 78 I---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK 133 I +H DI L + I ++ L+ + ISK Sbjct: 103 IGLSWHD---DILSLHRRSEFEPGYFIDLQDIVGKI---GIKDLSLQKLYANIFHQKISK 156 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 Q+ ++W A L+D+Q QYAA+D L + Sbjct: 157 RQRLTNWEAGVLTDKQKQYAATDAWTCIKLYEEIRR 192 >gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 884 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 302 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 361 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 362 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 420 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 421 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 474 >gi|319641711|ref|ZP_07996394.1| hypothetical protein HMPREF9011_01992 [Bacteroides sp. 3_1_40A] gi|317386685|gb|EFV67581.1| hypothetical protein HMPREF9011_01992 [Bacteroides sp. 3_1_40A] Length = 216 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 14/169 (8%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 A + + VDTE ++ ++Q+S D + P+ + Sbjct: 37 AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 91 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + KI + D L V ++ + R L+ L Sbjct: 92 EFLMSDTLKIGLSLKDDFNSLRKREDVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 G ISK+Q+ S+W AD LS+ Q YAA+D + TE L+R G Sbjct: 150 FGQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCLTE-LERTG 197 >gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 772 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 190 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 249 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 250 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 308 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 309 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 362 >gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 928 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKSPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L K D + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|118387584|ref|XP_001026896.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89308663|gb|EAS06651.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 567 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 38/170 (22%) Query: 17 ARYVDAIAVDTET----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG--ML 70 I +D E L L ++QL+ + +A + L+ + Sbjct: 399 LESAKQIGLDGEFRPAVTKLDNNSQSLALLQLATQNYCFLFDPMALKNEKEYELLQQNIF 458 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + KI H DI + +AS+L + L L +L + Sbjct: 459 QNPNILKIGHTISGDI----------------SMVASQLNGQLNFKGSLD--LAKLHKVK 500 Query: 131 -----------ISK---AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 I+K +Q+S+WS L + Q+ Y A D AL + Sbjct: 501 NPEQKQSSLSFIAKFQLGEQTSNWSQRPLREAQIHYGALDAYISIALYNK 550 >gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG] gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG] Length = 897 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T + D+ AE D+ A DTET L L + +G I + Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P L + D K+ K+ H +FD VL V T I + + ++ Sbjct: 362 VPQQLELEFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421 Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157 +H + KE LGI K QQ+ D Q+ YAA D Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471 Query: 158 VHLHALRLQFTEKLQR 173 L F L++ Sbjct: 472 DITFRLFNYFKALLEQ 487 >gi|308809271|ref|XP_003081945.1| Werner Syndrome-like exonuclease (ISS) [Ostreococcus tauri] gi|116060412|emb|CAL55748.1| Werner Syndrome-like exonuclease (ISS) [Ostreococcus tauri] Length = 455 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 13/144 (9%) Query: 38 RLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 + +VQ++ V ++ D R K R D L Sbjct: 132 KTSLVQIAAASADLKRKVVVLARIHTAGLTRAFKRWCRDSSRGKTGFNARGDARKLARDH 191 Query: 94 GVRVRPVFCTKI----ASRLTRTYT--NQHGLKDNLKELLGINISKAQQS-SDWSADDLS 146 GV + V ++ A R L + +LG + K + S+W + L+ Sbjct: 192 GVEISRVI--ELNALAAERFPGGCPSAPSWSLARLCEHVLGKTLPKDKTRMSNWEREKLN 249 Query: 147 DEQLQYAASDVVHLHALRLQFTEK 170 + Q++YAA D + + Sbjct: 250 ENQIKYAAMDAWASLMVYRALMRR 273 >gi|74142907|dbj|BAE42489.1| unnamed protein product [Mus musculus] Length = 862 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 12/139 (8%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ +K I L Sbjct: 88 RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+ + L +K +LG + K+ + S+WS L+++ Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202 Query: 149 QLQYAASDVVHLHALRLQF 167 Q YAA+D + + Sbjct: 203 QKLYAATDAYAGLIIYQKL 221 >gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4] gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4] Length = 922 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 27/196 (13%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E + A + +AVDTET L L + + G + +A AP Sbjct: 327 LTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAP 386 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L D K +K+ ++DI+VL G++++ V F T + S + + Sbjct: 387 QQLDKQTALEKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLQGVVFDTMLESYVFNSV 445 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALR 164 ++H + + LG K D A L+ Q+Q YAA D L Sbjct: 446 ASRHDMDGLALKYLGH---KNIAFEDIAGKGAKQLTFNQIQLETAAPYAAEDADITLRLH 502 Query: 165 LQFTEKLQRLGRSDLA 180 +L++ ++LA Sbjct: 503 QHLWPRLEKE--TELA 516 >gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 929 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 18/173 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP Sbjct: 347 LKQAEVFAFDTETDGLDTLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAKVLALF 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK KI +FD V+ + +R + F T + S + + +H + + Sbjct: 407 KPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L ++ + + L+ Q+ YAA D L + KLQ Sbjct: 466 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHLHQKLWGKLQ 518 >gi|281425845|ref|ZP_06256758.1| 3- 5 exonuclease domain protein [Prevotella oris F0302] gi|281400106|gb|EFB30937.1| 3- 5 exonuclease domain protein [Prevotella oris F0302] Length = 227 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 14/156 (8%) Query: 20 VDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 D + VDTET + + ++ ++Q++ D T + R+ A + +L D K Sbjct: 49 CDILGVDTETRPTFHKGEQHKVALLQVASHD-TCFLFRLNDIGMPASV-IRLLEDRTVPK 106 Query: 78 I---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK 133 I +H DI L + I ++ L+ + ISK Sbjct: 107 IGLSWHD---DILSLHRRSEFEPGYFIDLQDIVGKI---GIKDLSLQKLYANIFHQKISK 160 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 Q+ ++W A L+D+Q QYAA+D L + Sbjct: 161 RQRLTNWEAGVLTDKQKQYAATDAWTCIKLYEEIRR 196 >gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] Length = 1043 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 67/206 (32%), Gaps = 29/206 (14%) Query: 3 TIRVHEGDIPAECAARY-VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---- 57 TI E + A AA Y +A+DTET L P L + L G + + Sbjct: 434 TIVTLEA-LDAVIAAAYEAGLLAIDTETTSLDPMLADLAGLSLCAEPGKAFYVPVGHTSG 492 Query: 58 AGQKN----------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 GQ L +L D KI ++D VL GV +RP+ Sbjct: 493 EGQDLFEGKGLLPGQLPIGVVLERLKPLLEDPSILKIGQNVKYDWIVLKQH-GVEMRPLD 551 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGIN-----ISKAQQSSDWS-ADDLSDEQLQYAAS 155 T + S + HG+ ++ LG + A D+ +YAA Sbjct: 552 DTLLLSYVLDAGLTDHGMDVLSEKHLGHKPIPFSAVAGSGRTFIGFARVAIDKATEYAAE 611 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLAT 181 D L +L + + Sbjct: 612 DADVTLRLWRVLKPRLPAEKMTTVYE 637 >gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] Length = 952 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 23/194 (11%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76 + +++DTET G P L + S + + + A + A + +E Sbjct: 379 EILSIDTETTGTEPMEAELVGMSFSDAENQAYYVPVPANRDEALKIVNEFRPLYENENSM 438 Query: 77 KIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132 K+ ++D+ VL GV+V+ +F T +A + + +H + + L I+I Sbjct: 439 KVGQNIKYDMIVLQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHID 496 Query: 133 -------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 K Q+ + DL E + +YA D L+ ++L+ L Sbjct: 497 ELIGAKGKNQK----NMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEHAAEHLFYEIE 552 Query: 184 CNFLMDRAELDLLG 197 + ++ G Sbjct: 553 MPLVPVLVNIESNG 566 >gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6] gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6] Length = 936 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 28/183 (15%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------------------A 58 R +AVDTET GL L + L G I + Sbjct: 347 RERGYVAVDTETTGLDEMVVDLVGISLCVEPGEACYIPLTHKVGGDDLFGGEGLAEGQMP 406 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + L +L D KI ++D +L G V P+ T + S + HG Sbjct: 407 LDQALEMLKPVLEDPAILKIGQNMKYDAKILHRY-GADVAPIDDTMLMSYALHAGLHGHG 465 Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + L + + + + +++ + YAA D L F +L Sbjct: 466 MDTLSERYLDHKPIPIKPLLGSGKSAITFDRVPIANA-VPYAAEDADITLRLWQLFKPQL 524 Query: 172 QRL 174 + Sbjct: 525 HQE 527 >gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] Length = 913 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + IA DTET + ++ ++ V + +G + +A P L Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120 +L D K+ K+ + ++DI VL P+ + T + S + + +H + Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171 + LG + + D A L+ +Q+ YAA D L +KL Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500 Query: 172 QR 173 + Sbjct: 501 EA 502 >gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2] Length = 913 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + IA DTET + ++ ++ V + +G + +A P L Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120 +L D K+ K+ + ++DI VL P+ + T + S + + +H + Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171 + LG + + D A L+ +Q+ YAA D L +KL Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500 Query: 172 QR 173 + Sbjct: 501 EA 502 >gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2] gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2] Length = 604 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 19/132 (14%) Query: 14 ECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 + ++ + +DTET GL D R +VQ + +I + G + L Sbjct: 29 DFVRAHLGFLGLDTETTGLDIYSDDFRCRLVQFGTPNE-AWVIPVELGPRYEEEARQALR 87 Query: 72 DEKREK--IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLT-----RTYTNQHGL 119 + K + H +D+ V+ T G+ + V TKI + L + H L Sbjct: 88 N---VKGFVLHNASYDLQVIERTLGIPMEDMWPK-VTDTKILAHLVDPRPFKEGGIGHKL 143 Query: 120 KDNLKELLGINI 131 ++ +K + N+ Sbjct: 144 EELVKHYIDANV 155 >gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] Length = 913 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + IA DTET + ++ ++ V + +G + +A P L Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120 +L D K+ K+ + ++DI VL P+ + T + S + + +H + Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171 + LG + + D A L+ +Q+ YAA D L +KL Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500 Query: 172 QR 173 + Sbjct: 501 EA 502 >gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1] Length = 913 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + IA DTET + ++ ++ V + +G + +A P L Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120 +L D K+ K+ + ++DI VL P+ + T + S + + +H + Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171 + LG + + D A L+ +Q+ YAA D L +KL Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500 Query: 172 QR 173 + Sbjct: 501 EA 502 >gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 964 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKR 75 + +A+DTET G P L + S + I + AG++ A + ++K Sbjct: 391 SEILALDTETTGTDPMDAELVGMSFSIAENQAFYIPVPAGREEATKIVREFESVFKNDKS 450 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL G+ +R +F T +A + + +H + + L I+I Sbjct: 451 LKVGQNIKYDMLVLQNY-GIEIRGRLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 508 Query: 132 S-------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DLS + + YA D L+ ++L++ L Sbjct: 509 EELIGPRGKGQK----NMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEI 564 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 565 EMPLVPVLVNIESNG 579 >gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] Length = 931 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 18/184 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D A DTET L L V + +G + +A +AP L Sbjct: 348 LKAADVFAFDTETDSLDYMVANLVGVSFATEEGVAAYVPVAHDYLDAPEQLDRDWVLEQL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + T +AS + + +H + Sbjct: 408 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + L+ Q++ YAA D L + +++ + Sbjct: 467 FLQHSCISFEQIAGKGKKQLTFNQIELEQASPYAAEDADVTLRLHNRLLANIEQDEKLKT 526 Query: 180 ATSC 183 Sbjct: 527 IYEE 530 >gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1] gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1] Length = 913 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + IA DTET + ++ ++ V + +G + +A P L Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120 +L D K+ K+ + ++DI VL P+ + T + S + + +H + Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171 + LG + + D A L+ +Q+ YAA D L +KL Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500 Query: 172 QR 173 + Sbjct: 501 EA 502 >gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016] gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016] Length = 913 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + IA DTET + ++ ++ V + +G + +A P L Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120 +L D K+ K+ + ++DI VL P+ + T + S + + +H + Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171 + LG + + D A L+ +Q+ YAA D L +KL Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500 Query: 172 QR 173 + Sbjct: 501 EA 502 >gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] Length = 949 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 20/169 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET P L + S + + + + + A + +E Sbjct: 376 SKILSLDTETTETEPMDAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132 K+ ++D+ VL V P+F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLQNYGAVVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494 Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL + + YA D L+ ++L+ Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADITLKLKNVLEKELKE 539 >gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703] gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703] Length = 931 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 18/174 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + A DTET L L V + G + + +AP L Sbjct: 349 KTKGVFAFDTETDSLDTISTTLVGVSFAINAGEAAYLPLGHDYLDAPEQLDRDKVLALLK 408 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D KI +FD V+ G+ +R + F T + S + + +H + + Sbjct: 409 PVLEDASVLKIGQNLKFDKGVMARY-GITLRGIAFDTMLESYVLDSVAGRHDMDSLSERY 467 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 L ++ + + L+ Q+ YAA D L +EKL + Sbjct: 468 LNHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRLHQVLSEKLNKE 521 >gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1] Length = 959 Score = 65.8 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 TI + + A+DTET + + +L + +S D I + Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108 +L + KI + ++D A +F +G+ + P T +AS Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472 Query: 109 LTRTYTNQHGLKDNLKELLGIN 130 + +HG+ K LG+ Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494 >gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4] gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4] Length = 992 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 67/225 (29%), Gaps = 70/225 (31%) Query: 5 RVHEGDIPAE----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI------- 53 V D+P AAR +A DTET L P + L V L+ D Sbjct: 370 YVTIRDLPTLEGWIAAAREAGFVAFDTETTSLDPMQADLVGVSLALQDNAASPGAATIRA 429 Query: 54 ------------IRIAAGQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFY 91 + G K A N L G+L D K+ ++D V+ Sbjct: 430 AYVPLGHKTGRDDLFSDGLKLAENQIPMDAALTALKGLLEDASVLKVAQNLKYDYLVMKR 489 Query: 92 TFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---------------------IN 130 G+ +R T + S + HG+ + LG ++ Sbjct: 490 H-GIVIRGFDDTMLLSYVLEAGVGAHGMDSLSERWLGHTPIPYKEVAGSGKSLVTFDLVD 548 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 I KA YAA D L L +L +G Sbjct: 549 IDKAT---------------AYAAEDADVTLRLWLVLKPRLAAVG 578 >gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46] gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46] Length = 1016 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 60/184 (32%), Gaps = 32/184 (17%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPN----------LV 67 VDTET L R L V L+ G I +A G+ P+ L Sbjct: 432 VDTETNALDAHRADLVGVSLATAPGRAAYIPLAHRGSEDLFGEGLLPDQLPWDAVRARLK 491 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D K+ ++D VL G+ ++P T + S + HG+ + + L Sbjct: 492 PLLEDPAVLKVGQNVKYDWLVLVRH-GIEIQPYDDTMLISYVLDAGKGSHGMDELARRHL 550 Query: 128 GINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 G +D + L YAA D L +L R+ Sbjct: 551 GHQP---ITFADVTGTGRAKVTFDRVPLDKA-TAYAAEDADVTLRLWRLMKPRLAAEHRA 606 Query: 178 DLAT 181 + Sbjct: 607 TVYE 610 >gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1] Length = 959 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 TI + + A+DTET + + +L + +S D I + Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108 +L + KI + ++D A +F +G+ + P T +AS Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472 Query: 109 LTRTYTNQHGLKDNLKELLGIN 130 + +HG+ K LG+ Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494 >gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E] Length = 959 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 TI + + A+DTET + + +L + +S D I + Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108 +L + KI + ++D A +F +G+ + P T +AS Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472 Query: 109 LTRTYTNQHGLKDNLKELLGIN 130 + +HG+ K LG+ Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494 >gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] Length = 953 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 + +++DTET G P L + S + + + ++ A L + +EK Sbjct: 380 TEILSIDTETTGTEPMEAELVGMSFSDAENKGYYVPVPPNREEALKIINELRPLYENEKS 439 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL GV+VR +F T +A + + +H + + L I+I Sbjct: 440 LKVGQNIKYDMIVLQNY-GVQVRGALFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 497 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DL E + +YA D L+ ++L+ G L Sbjct: 498 DELIGAKGKNQK----NMRDLPAEDVYRYACEDADITLKLKNVLEKELKEQGAEHLFYEI 553 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 554 EMPLVPVLVNIETNG 568 >gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62] gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62] Length = 932 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 72/205 (35%), Gaps = 30/205 (14%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------------AAGQKN-- 62 +AVDTET L R L + L G I I A GQ Sbjct: 345 GYVAVDTETTSLNEMRAELVGISLCVKAGQACYIPINHKEGANDDLFGSDKLAEGQMAEA 404 Query: 63 --APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L ML D+ KI ++D + GV V P+ T + S + HG+ Sbjct: 405 VVLSMLKPMLQDDSILKIGQNMKYDAKIFAR-CGVDVAPIDDTMLMSYAQNAGLHNHGMD 463 Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 LLG + + + + D+++ ++YAA D L +L Sbjct: 464 TLSDRLLGHTPIPIKSLLGTGKSAITFDRVDVAEA-VKYAAEDADITLRLWQHLKPQLHV 522 Query: 174 LGRSDLATS-CCNFLMDRAELDLLG 197 G + + + + AE+++ G Sbjct: 523 KGVTTVYETLERPLVPVLAEMEMTG 547 >gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 933 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 16/174 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L P + L + ++ G + AP L Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTQALAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 V +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 411 VPLLTDPAVRKLGQHGKYDLHVMRRHGVELAGYAHDTLLESFVLNSGSARHDMDSLAKRY 470 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + A + Q+ +YAA D L KL Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHHVLGPKLAAE 524 >gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1] Length = 959 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 TI + + A+DTET + + +L + +S D I + Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108 +L + KI + ++D A +F +G+ + P T +AS Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472 Query: 109 LTRTYTNQHGLKDNLKELLGIN 130 + +HG+ K LG+ Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494 >gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16] gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16] Length = 941 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 + +A+DTET G P L + S + + + A +K A + +EK Sbjct: 368 SEILALDTETTGTDPMDAELVGMSFSITENQAFYVPVPAERKEAIKIVREFEPVFKNEKS 427 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL G+ VR +F T +A + + +H + + L I+I Sbjct: 428 LKVGQNIKYDMLVLQNY-GIEVRGKLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 485 Query: 132 S-------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DLS +++ YA D L+ ++L++ L Sbjct: 486 EELIGPKGKGQK----NMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEI 541 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 542 EMPLVPVLVNIESNG 556 >gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54] gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54] Length = 889 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 30/218 (13%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 ++ E + I +DTET L R L + L I +A + Sbjct: 297 VQTSEALAQMAAVLGHASRIVIDTETTSLDARTAGLVGISLCAELDRAWYIPLAHIEATG 356 Query: 64 PN-------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 L +L K+ H ++D VL GV + P+ T +A+ L Sbjct: 357 TPVPGQLPISEVMAVLEPLLTCADILKVGHNLKYDWTVLKMQTGVEIFPLADTMVAAHLL 416 Query: 111 RTYTNQHGLKDNLKELLGINI---------SKAQQSSD-WSADDLSDEQLQYAASDVVHL 160 L D E+ G+ + K +D ++ L + Y+ DV Sbjct: 417 EK-GRTLKLDDLCAEI-GLELTSFAEVVAEDK---RADAFAYVALKEA-CHYSCEDVYGA 470 Query: 161 HALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 +L F EKL L + A++++ G Sbjct: 471 LSLWQDFGEKLSDKALDGLFYDVEMPIIPVLAKMEIGG 508 >gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72] Length = 956 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 TI + + A+DTET + + +L + +S D I + Sbjct: 351 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 410 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108 +L + KI + ++D A +F +G+ + P T +AS Sbjct: 411 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 469 Query: 109 LTRTYTNQHGLKDNLKELLGIN 130 + +HG+ K LG+ Sbjct: 470 VINAAATRHGMDALAKHYLGVQ 491 >gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7] Length = 956 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 TI + + A+DTET + + +L + +S D I + Sbjct: 351 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 410 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108 +L + KI + ++D A +F +G+ + P T +AS Sbjct: 411 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 469 Query: 109 LTRTYTNQHGLKDNLKELLGIN 130 + +HG+ K LG+ Sbjct: 470 VINAAATRHGMDALAKHYLGVQ 491 >gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1] Length = 959 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 TI + + A+DTET + + +L + +S D I + Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108 +L + KI + ++D A +F +G+ + P T +AS Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472 Query: 109 LTRTYTNQHGLKDNLKELLGIN 130 + +HG+ K LG+ Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494 >gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1] Length = 959 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 TI + + A+DTET + + +L + +S D I + Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108 +L + KI + ++D A +F +G+ + P T +AS Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472 Query: 109 LTRTYTNQHGLKDNLKELLGIN 130 + +HG+ K LG+ Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494 >gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169] Length = 956 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 TI + + A+DTET + + +L + +S D I + Sbjct: 351 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 410 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108 +L + KI + ++D A +F +G+ + P T +AS Sbjct: 411 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 469 Query: 109 LTRTYTNQHGLKDNLKELLGIN 130 + +HG+ K LG+ Sbjct: 470 VINAAATRHGMDALAKHYLGVQ 491 >gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32] gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32] Length = 933 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 69/178 (38%), Gaps = 18/178 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 350 LKAAELFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLEQL 409 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D++VL G+ ++ + T +AS + + +H + Sbjct: 410 KPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIKHDTMLASYVFNSVGGKHDMDSLALR 468 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177 L + +Q + L+ Q++ YAA D L + E +++ + Sbjct: 469 FLQHSCISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKL 526 >gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] Length = 911 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 20/191 (10%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------- 65 + AR A DTET L + RL ++ GT + + AP+ Sbjct: 327 DDIKAR--GFFAFDTETTSLNYMQARLVGFSMAIRPGTAAYVPLGHDYPGAPDQLDFEQV 384 Query: 66 ---LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKD 121 L +L + K+ ++D +L G+ +R + T + S + + +H + Sbjct: 385 LAKLKPILENADILKLGQNLKYDSNILCNH-GITLRGITEDTMLESYVLDSVGTRHDMDS 443 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG 175 + LG +K Q + A L+ Q+ YAA D L + KL+ + Sbjct: 444 LALKYLGRGTTKFQDIAGKGAKQLTFNQIALEQAAPYAAEDADVTLRLHEVLSPKLKAVP 503 Query: 176 RSDLATSCCNF 186 R + Sbjct: 504 RLHQLYAELEV 514 >gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] Length = 891 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 19/194 (9%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 V E + A + A DTET L+ R L + + G + + P Sbjct: 299 VTEDQLDDLIHALKKAGRFAFDTETTSLVATRADLVGISFAIKPGEGWYLPVGHRYLGVP 358 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L ++ D + KI ++D+ VL G+ V + T +AS L Sbjct: 359 EQLDRALVIDKLRPLMADTQLAKIAQNAKYDLLVLRRA-GLEVAGLSCDTMLASYLANPA 417 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQF 167 HGL ELLG + + + E+++ YA D L + Sbjct: 418 AKSHGLDTLASELLGYRTIGYTEVTGKGKKQIGFEEVEIEKATVYATEDADITLRLADKL 477 Query: 168 TEKLQRLGRSDLAT 181 +L G+ +L Sbjct: 478 EPQLAETGQGELFR 491 >gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4] gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4] Length = 959 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 TI + + A+DTET + + +L + +S D I + Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108 +L + KI + ++D A +F +G+ + P T +AS Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472 Query: 109 LTRTYTNQHGLKDNLKELLGIN 130 + +HG+ K LG+ Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494 >gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8] Length = 956 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56 TI + + A+DTET + + +L + +S D I + Sbjct: 351 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 410 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108 +L + KI + ++D A +F +G+ + P T +AS Sbjct: 411 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 469 Query: 109 LTRTYTNQHGLKDNLKELLGIN 130 + +HG+ K LG+ Sbjct: 470 VINAAATRHGMDALAKHYLGVQ 491 >gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12] gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 941 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKR 75 + +A+DTET G P L + S + I + AG++ A + ++K Sbjct: 368 SEILALDTETTGTDPMDAELVGMSFSIAENQAFYIPVPAGREEATKIVREFESVFKNDKS 427 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL G+ +R +F T +A + + +H + + L I+I Sbjct: 428 LKVGQNIKYDMLVLQNY-GIEIRGRLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 485 Query: 132 S-------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DLS + + YA D L+ ++L++ L Sbjct: 486 EELIGPRGKGQK----NMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEI 541 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 542 EMPLVPVLVNIESNG 556 >gi|294955496|ref|XP_002788534.1| hypothetical protein Pmar_PMAR010065 [Perkinsus marinus ATCC 50983] gi|239904075|gb|EER20330.1| hypothetical protein Pmar_PMAR010065 [Perkinsus marinus ATCC 50983] Length = 663 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 22/144 (15%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 I +D E + Q++ D I + + + L L + ++ + Sbjct: 520 IGIDVEWSSG----PGAALFQVASEDTVYLIDMLVPEIRQSSTLFSTLR--RVRRVLGFS 573 Query: 83 -RFDIAVL--FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 D+ + G V ++ + L+ ++ LG + K +Q S+ Sbjct: 574 ISADLERIPQLKECG-----VIDVQV--------DKRGSLQRHVAGQLGAYLDKTEQCSE 620 Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163 W+ LS+ Q YAA D L AL Sbjct: 621 WADRPLSESQKNYAALDAYTLLAL 644 >gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581] gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581] Length = 922 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 70/210 (33%), Gaps = 24/210 (11%) Query: 3 TIRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 + + E + E AR D A D ET L + V L+ G I +A Sbjct: 324 DVVITEQAVLDEWLARLADCEAFCFDLETTSLSYMEADIVGVGLALEPGEAAYIPLAHDY 383 Query: 61 KNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 +AP L + D + KI ++DI+VL P+ T + S + Sbjct: 384 LDAPEQLDRQAVLEALAPLWADAGKAKIGQNLKYDISVLARHGHEVAGPLHDTMLESYVL 443 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLH 161 + +H + + LG K D A L+ Q+ YA DV Sbjct: 444 DSTATRHDMDSLALKYLG---EKTVSFEDIAGKGAKQLTFNQIALEQAAPYACEDVDITL 500 Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 L + +++ GR + R Sbjct: 501 RLHRELRPRVEGQGRLAEVLDNLERPLVRV 530 >gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] Length = 929 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D A DTET L L + + +G + +A +AP L Sbjct: 346 LKAADVFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPAQLDRDWVLEQL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + T +AS + + +H + Sbjct: 406 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + L+ Q++ YAA D L + E + + + Sbjct: 465 FLQHSCISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKA 524 Query: 180 ATSCCNF 186 Sbjct: 525 IYQEIEV 531 >gi|309361664|emb|CAP29572.2| hypothetical protein CBG_10060 [Caenorhabditis briggsae AF16] Length = 816 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 31/199 (15%) Query: 4 IRVHEGDIPAECAA----RYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDII 54 I E ++ C + D+E ++ +QL D T I Sbjct: 447 IVKTESELEDLCVEMDEVENGTFVGYDSEFRPGHLTDTNTI--KVATIQLCFHDTTYLID 504 Query: 55 RIAAGQKNAPN------LVGMLVDEKREKIFHYGRFDIAVLF------YTFGVR-VRPVF 101 + + P+ + +K + + DI LF F + + Sbjct: 505 CVELENEKLPDKMWIRLYQSIFESKKLTVVGFDLKHDIEALFSIHPIRQQFKIEDIENFV 564 Query: 102 C----TKIASRL---TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 C ++I + + L + +ELL I I K++Q+ +W + L Q+ YA Sbjct: 565 CVRRFSEILMEIDINILNLSKSCRLVNLSEELLDITIDKSEQNGNWMSRPLRKSQIVYAT 624 Query: 155 SDVVHLHALRLQFTEKLQR 173 D V + + + E Q+ Sbjct: 625 MDSVVVLKVFEKVLELAQK 643 >gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] Length = 940 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 25/195 (12%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAP----NLVGMLVDEK 74 D A DTET G+ P + +V +S + + + A ++ A + L + K Sbjct: 367 DFFAFDTETDGIDPM--KAGLVGMSFAVKENEAWYVPVPAAREEADKVLAHFSPALQNPK 424 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 KI +FDI V+ P+F T IA L +HG+ + L + Sbjct: 425 SFKIGQNIKFDILVVRKYGIRIAGPLFDTMIAHYLLNPEL-RHGMDYLAETYLKYKTVRI 483 Query: 135 QQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 ++ +QL +YAA D L+ F L + G L Sbjct: 484 EE----LIGPKGRKQLCMRDVPIPQVAEYAAEDADITLKLKNYFAPCLDKEGLESLFYDI 539 Query: 183 CCNFLMDRAELDLLG 197 + AE++ G Sbjct: 540 EMPLIYVLAEMEYTG 554 >gi|332024229|gb|EGI64433.1| Werner syndrome ATP-dependent helicase [Acromyrmex echinatior] Length = 208 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 14/183 (7%) Query: 9 GDIPAECAARYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 I + + + I D E + +VQ+ D ++ + + +K Sbjct: 19 AQICDDLIKKEIVPIGFDLEWPFN-FQTGSGKTALVQICLEDSVCYLLYVYSLKKLPAAF 77 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR------PVFCTKIASRLTRTYTNQHGLK 120 V +L K + + + D+ L F + + + L+ Sbjct: 78 VELLCHSKVKLVGVNIKNDVWKLGRDFKEFPAQKVVENNCLDCGTYANRVLKRSCRWSLE 137 Query: 121 DNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK---LQRLG 175 LL ISK + S W LS+ Q YAA+D L K +++ Sbjct: 138 KLTAYLLKKKISKNPDVRMSKWHIQPLSNAQKNYAATDAYVSLLLHTTLDAKAITIEKEN 197 Query: 176 RSD 178 ++D Sbjct: 198 QND 200 >gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] Length = 593 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 13/167 (7%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD--EKREKIFHYG- 82 D ET G + RL +QL GD D + A Q P + + E +FH G Sbjct: 4 DCETNGFLHVMTRLWTIQL--GDANTDEATVYADQIGFPPIKDAIKRLKEADRVVFHNGQ 61 Query: 83 RFDIAVLFYTF-GVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 FDI + + + G V+ T +A+RL + L D K LG K + D+ Sbjct: 62 GFDIHAINHFYPGTLTPHQVWDTLVAARLLNPSERANSLDDWGKR-LGEY--KGE-FKDF 117 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 S S E ++YA DVV L + +L+ G+S + ++ Sbjct: 118 SR--FSKELVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYI 162 >gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2] gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2] Length = 888 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 32/203 (15%) Query: 23 IAVDTETLGLMPRRDRLCIV--QLSPGDGTVDIIRI---AAGQKNAPNLVGMLVDEKREK 77 +A DTET L + + +V + + + I G + L L E K Sbjct: 321 VAFDTETDDLDTK--KANLVGFSFAYSEEKAYYVPIGHNYLGVGDQVGLDKAL--EAISK 376 Query: 78 IF------HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 IF H +FD+++L+ + + T I + L + GL+ K L ++ Sbjct: 377 IFEHTIIGHNLKFDLSLLYRYGIDEKKDIVDTMILAWLVDP-GSSVGLESVAKRFLDHDM 435 Query: 132 -------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-- 182 K + D+S + D +YA+ D V + + + + L++ G S L Sbjct: 436 IAYKETVKKGE---DFSQVSI-DAACKYASEDAVITYMVYFKLLDALRKQGASHLIDEAK 491 Query: 183 --CCNFLMDRAELDLLGWENVDI 203 F+ ++ G + +DI Sbjct: 492 KVEFPFVNTLIHMEQAGIK-IDI 513 >gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM] gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM] Length = 933 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 29/181 (16%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--------------------AAGQ 60 +A+DTET L + L + L+ G I + Sbjct: 346 GYVAIDTETTSLNEMQAELVGISLAVEPGQACYIPLGHREGASDDLFGSDALAEGQLPRD 405 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L +L D KI ++D + G+ + P+ T + S + + HG+ Sbjct: 406 AVLSALRPVLEDAAVLKIGQNMKYDAKIF-AGLGLTIAPIDDTMLMSYALNSGIHNHGMD 464 Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + L N + + + + + + ++YAA D L F +L + Sbjct: 465 ALSERYLAHNPIPIKTLLGTGKSAVTFDKVPIDEA-VKYAAEDADITLRLWHMFKPQLHQ 523 Query: 174 L 174 Sbjct: 524 K 524 >gi|157874025|ref|XP_001685508.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128580|emb|CAJ08712.1| hypothetical protein LMJF_32_1880 [Leishmania major strain Friedlin] Length = 753 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 30/194 (15%) Query: 17 ARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGML 70 ARY D IA+D E L +CI+ L+ TV II + A L +L Sbjct: 541 ARYSDTLTIALDLEGRSLGRMGS-ICIITLATYS-TVYIIDVVMLGAEALYAGSPLKRVL 598 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--GLKDNLKELLG 128 K+ R D LF+ +GVR++ V +I+S T+ H G+K + +LG Sbjct: 599 ESRDIMKLMFDCRADCDALFFLYGVRLQNVCDLQISSCFALFPTSPHLPGMKS-VFLVLG 657 Query: 129 INISKAQQSSD----------------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + + + W L+D +QY A DV + A +L + ++ Sbjct: 658 LFTDEDAGIKNAGRHLFNPRCGGSFDWWEERPLTDVLVQYCAVDVKYFFAAQLILQDHVE 717 Query: 173 ---RLGRSDLATSC 183 RLG + LA+ C Sbjct: 718 QGCRLGEARLASVC 731 >gi|326432840|gb|EGD78410.1| hypothetical protein PTSG_09106 [Salpingoeca sp. ATCC 50818] Length = 1063 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 17/154 (11%) Query: 23 IAVDTETLGLMPRRDRLC--IVQLSPGDGTVDIIRIAA------GQKNAPNLVGMLVDEK 74 + +DTE R+ R+ ++Q++ D + + Q A L + E Sbjct: 906 VGIDTE-----WRQPRVACTVMQIAVCDSVWIVDTLIHTKTKQYAQHVAALLEFLFACEH 960 Query: 75 REKIFHYGRFDIAVLFYTFGVRV-RPV---FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + + D+ + V +P+ + R Q L + + G Sbjct: 961 VHVLGFSFKDDVRHIIPLCPVLASKPLVSFTDVQQLVRRQLKKKGQPSLSLACERVFGRP 1020 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 ++K +Q S+W L +QL+YAA D L + Sbjct: 1021 LNKMEQCSNWERRPLRRDQLEYAAIDAWCLIGIY 1054 >gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083] gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083] Length = 945 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 65/211 (30%), Gaps = 32/211 (15%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------------AAG 59 AA +AVDTET GL L + + G I + A G Sbjct: 353 AAYARGYVAVDTETTGLNDMIADLVGISMCSEAGKACYIPLTHKDASTDDLFGSDELADG 412 Query: 60 QKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 Q + L +L D KI ++D + G+ + P+ T + S + Sbjct: 413 QLDLEIAIAALKPLLEDPSVMKIGQNMKYDAKIFARY-GIEIAPIDDTMLISYAQHAGLH 471 Query: 116 QHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 HG+ + LG + + + + + YAA D L Sbjct: 472 NHGMDALSERYLGHTPIPIKPLLGTGKSAITFDRVPIDHA-TPYAAEDADITLRLWQHLK 530 Query: 169 EKLQRLGRSDLATSCCN--FLMDRAELDLLG 197 L R+ + A+++ G Sbjct: 531 PTLHSA-RTTRVYETMERPLVPVLAQMERYG 560 >gi|197927293|ref|NP_001128149.1| Werner syndrome ATP-dependent helicase [Pongo abelii] gi|55726573|emb|CAH90053.1| hypothetical protein [Pongo abelii] Length = 1486 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 16/128 (12%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93 ++ ++QL + + I++ L +L ++ +K I L F Sbjct: 96 KVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151 Query: 94 GVRVRP---VFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 ++++ + +A++ + T L +K LG + K+ + S+WS L+++ Sbjct: 152 DIKLKNFVELAD--VANKKLKC-TETWSLNSLVKHPLGKQLLKDKSIRCSNWSKFPLTED 208 Query: 149 QLQYAASD 156 Q YAA+D Sbjct: 209 QKLYAATD 216 >gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895] gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895] Length = 928 Score = 65.4 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNHAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKARKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4] gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4] Length = 930 Score = 65.4 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D A DTET L L V + +G + +A +AP L Sbjct: 347 LKASDLFAFDTETDSLDYMVTNLVGVSFATDEGVAAYVPLAHDYLDAPQQLDRDWVLEQL 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + T +AS + + +H + Sbjct: 407 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + +++ + Sbjct: 466 FLQHSCISFEQIAGKGKNQLTFNQIDLNEAAPYAAEDADVTLRLHNRLAANIEQDKKLKA 525 Query: 180 ATSCCNF 186 Sbjct: 526 VYEEIEM 532 >gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] Length = 937 Score = 65.4 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 29/185 (15%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------------------- 57 R +AVDTET G L + L G+ I + Sbjct: 347 RERGWVAVDTETTGFDEMVVDLVGISLCVEPGSACYIPLTHKSGSSDDLFGSDDLADGQM 406 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 Q L +L D KI ++D + G+ V P+ T + S + H Sbjct: 407 PLQDALNLLKPVLEDNSILKIGQNMKYDAKIFARR-GIDVAPIDDTMLMSYAMHAGQHGH 465 Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G+ + L + + + + + D + YAA D L F + Sbjct: 466 GMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDA-VAYAAEDADITLRLWQLFKPQ 524 Query: 171 LQRLG 175 L + G Sbjct: 525 LHQSG 529 >gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens] Length = 939 Score = 65.4 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 30/184 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET G+ ++ +L + + I + P L Sbjct: 348 LKNAKLFAFDTETTGIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRAL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTRTYTNQHG 118 +L D + K+ + +FD+ +L G+ VR + F T + S + + +H Sbjct: 408 KPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHD 467 Query: 119 LKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 + ++ L D A L+ +Q+ YAA D L E Sbjct: 468 MDSLAQKYLNHT---TVSFQDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQTLFE 524 Query: 170 KLQR 173 KL Sbjct: 525 KLSA 528 >gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder] Length = 604 Score = 65.4 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 19/132 (14%) Query: 14 ECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 + ++ + +DTET GL D R +VQ + +I + G + L Sbjct: 29 DFVRAHLGFLGLDTETTGLDIYSDGFRCRLVQFGTPNE-AWVIPVELGPRYEEEARQALR 87 Query: 72 DEKREK--IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLT-----RTYTNQHGL 119 + K + H +D+ V+ T G+ + V TKI + L + H L Sbjct: 88 N---VKGFVLHNASYDLQVIERTLGIPMEDMWPK-VTDTKILAHLVDPRPFKEGGIGHKL 143 Query: 120 KDNLKELLGINI 131 ++ +K + + Sbjct: 144 EELVKHYIDAPV 155 >gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R] Length = 941 Score = 65.4 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 + +A+DTET G P L + S + + + A ++ A + +EK Sbjct: 368 SEILALDTETTGTDPMDAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEPVFKNEKS 427 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL G+ VR +F T +A + + +H + + L I+I Sbjct: 428 LKVGQNIKYDMLVLQNY-GIEVRGKLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 485 Query: 132 S-------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DLS +++ YA D L+ ++L++ L Sbjct: 486 EELIGPKGKGQK----NMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEI 541 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 542 EMPLVPVLVNIESNG 556 >gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32] gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32] Length = 891 Score = 65.4 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 13/135 (9%) Query: 9 GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-- 65 GD A A+D ET L P + + S D I +A P+ Sbjct: 300 GDFSALMDKLGTQSIFAIDLETTSLNPFEAEIVGISFSFSDHQAYYIPVAHHYLGVPDQL 359 Query: 66 --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQ 116 L +L+D +KI ++D VL G+ + ++ T +AS L + Sbjct: 360 SLAHVLQALRPLLLDPAIKKIGQNIKYDYQVLRRA-GIEMEGIWCDTMLASYLLNPNRSS 418 Query: 117 HGLKDNLKELLGINI 131 HGL ELL + Sbjct: 419 HGLNALAVELLDHKM 433 >gi|126030364|pdb|2E6L|A Chain A, Structure Of Mouse Wrn Exonuclease Domain gi|126030365|pdb|2E6M|A Chain A, Structure Of Mouse Werner Exonuclease Domain Length = 208 Score = 65.4 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 12/139 (8%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ +K I L Sbjct: 58 RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 113 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+ + L +K +LG + K+ + S+WS L+++ Sbjct: 114 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 172 Query: 149 QLQYAASDVVHLHALRLQF 167 Q YAA+D + + Sbjct: 173 QKLYAATDAYAGLIIYQKL 191 >gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040] gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040] Length = 935 Score = 65.4 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 61/184 (33%), Gaps = 29/184 (15%) Query: 18 RYVDAIAVDTETLGLMPRRDRL-----CIV--QLS---------PGDGTVDIIRIAAGQ- 60 R +AVDTET GL L C+V Q D +A GQ Sbjct: 345 REHGYVAVDTETTGLNEMIADLVGISLCVVPGQACYVPLTHKTGNSDDLFGSDDLAEGQM 404 Query: 61 ---KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D+ KI ++D + G+ V P+ T + S + H Sbjct: 405 PLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDVTPIDDTMLLSYALHGGMHGH 463 Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G+ + L + + + + + D YAA D L QF + Sbjct: 464 GMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVSIEDA-TPYAAEDADITLRLWQQFKPQ 522 Query: 171 LQRL 174 L + Sbjct: 523 LHQK 526 >gi|156363459|ref|XP_001626061.1| predicted protein [Nematostella vectensis] gi|156212923|gb|EDO33961.1| predicted protein [Nematostella vectensis] Length = 133 Score = 65.4 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 3/129 (2%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 +QL+ + + P +L+ +L + + K+ D L + Sbjct: 5 LQLAVNHSCLVLHLFHMRLDLLPRSLLNVLGNIRILKVGSGISGDAVKLLRDTNILCNGR 64 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVV 158 ++ +++ + GLK K +LGI + K + S+W L+ +Q+ YAA D Sbjct: 65 SDIQVYAKVLALNQDGTGLKKLAKTILGIELDKPKNISLSNWELFPLTYKQVSYAALDAW 124 Query: 159 HLHALRLQF 167 L ++ Sbjct: 125 VSFKLFVEL 133 >gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46] gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46] Length = 935 Score = 65.0 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 + +A+DTET G P L + S + + + A ++ A + +EK Sbjct: 362 SEILALDTETTGTDPMDAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEPVFKNEKS 421 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL G+ VR +F T +A + + +H + + L I+I Sbjct: 422 LKVGQNIKYDMLVLQNY-GIEVRGKLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 479 Query: 132 S-------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + DLS +++ YA D L+ ++L++ L Sbjct: 480 EELIGPKGKGQK----NMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEI 535 Query: 183 CCNFLMDRAELDLLG 197 + ++ G Sbjct: 536 EMPLVPVLVNIESNG 550 >gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM 22836] Length = 933 Score = 65.0 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 19/187 (10%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----MLVDEKREKIFHY 81 DTET GL P L + + +G + + A A L+ +EK KI Sbjct: 366 DTETTGLDPIVSELVGMSFAFKEGEAYYVPVPADFDEAKKLIDKFRPFFENEKILKIGQN 425 Query: 82 GRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS----- 132 ++DI VL + VR +F T IA L +H + + L I+I Sbjct: 426 IKYDIIVLKKY-DIHVRGKLFDTMIAHYLINPEL-RHNMDYMAETYLKYRTIHIDELIGA 483 Query: 133 KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDR 190 K + + L +Q+ YA D L+ + +++ S L + Sbjct: 484 KGKNQLN--MRSLRPDQISDYACEDADVTLKLKRILEKAIEKQDLSKLFYEIELPLIYVL 541 Query: 191 AELDLLG 197 A+++ G Sbjct: 542 ADMEFTG 548 >gi|255083480|ref|XP_002504726.1| predicted protein [Micromonas sp. RCC299] gi|226519994|gb|ACO65984.1| predicted protein [Micromonas sp. RCC299] Length = 1648 Score = 65.0 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 7/96 (7%) Query: 87 AVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--HGLKDNLKELLG-INISKAQQSSDWSAD 143 F V C + A+ R + + GL LG I K+QQ SDW A Sbjct: 1239 ERFQKRFAGVSCRVVCVREAAIGFRFFRERECRGLAAMCARALGGRAIDKSQQRSDWGAR 1298 Query: 144 DLSDEQLQYAASDVV----HLHALRLQFTEKLQRLG 175 L+ Q+ YAA D + L AL + + + G Sbjct: 1299 PLTRAQISYAALDALAPAMILRALAARVNSDVFKNG 1334 >gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli] gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli] Length = 898 Score = 65.0 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 18/164 (10%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75 DTET L + L + + G I +A +AP L + D K+ Sbjct: 325 DTETTSLNVMQAELVGLSFAIGGEKPVYIPLAHDYPDAPQQLNRQWVLQQLKPLFEDPKQ 384 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 KI H+ ++D+ +L + G+++R + F T + S L + +NQH L + L + Sbjct: 385 IKIGHHLKYDMNILAHY-GIQLRGIDFDTMLESYLLDSASNQHSLDSAALKHLDHKTIRF 443 Query: 135 QQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 ++ + A + Q+ YAA D L +L Sbjct: 444 EEIAGKGAKQKTFNQINLQDAGPYAAEDAAIALRLHETLKPQLD 487 >gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] Length = 932 Score = 65.0 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + G + +A +AP L Sbjct: 349 LKNAEVFAFDTETDGLDTLSSNLIGFSFAVAPGEAAYLPVAHDYLDAPTQLDRNWVLAQL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ +FD ++L + +R + F T + S + + +H + + Sbjct: 409 KPLLEDEKALKVGQNLKFDQSMLARY-DIELRGIAFDTMLESYVLDSVAGRHDMDSLAER 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KLQ+ G Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 528 VFQEIEMPLLPILSRIERTG 547 >gi|303271551|ref|XP_003055137.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463111|gb|EEH60389.1| predicted protein [Micromonas pusilla CCMP1545] Length = 516 Score = 65.0 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 67/226 (29%), Gaps = 75/226 (33%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65 A IAVD E + + R R+ +VQ++ + V + + A A Sbjct: 250 ANAPGKVIAVDCEGVAM-SRIGRVTLVQIAVPNERVYLFDVQALGSEACFERGGGGGGGE 308 Query: 66 -------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK---IASRL 109 L +L D K+ R D L++ G+ + VF + +A+R Sbjct: 309 EKDENNATNRSVTLKSVLEDASITKLMFDCRVDSDALYHQHGIALNGVFDIQLADVAAR- 367 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQ--------------------------------- 136 R + L + + ++ K Sbjct: 368 -RAASQSVALLSGVPKCAARHLGKGAAAEANALAAFDGVVDAAAGPDAAAISRVSEHLKS 426 Query: 137 ------SSD-------WSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + D W+ LS + +YAA D L + ++ Sbjct: 427 KVKASFAPDLGGDGTLWARRPLSADVRRYAALDAWLLVRIHDAMSD 472 >gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] Length = 971 Score = 65.0 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76 + ++DTET G P L + S + + + A + A E Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRAEAQKIVNEFRPAFEKEGVL 458 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 K+ ++D+ VL P+F T +A + + +H + + L I+I Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q+ + DLS E + +YA D L+ ++L+ L Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573 Query: 185 NFLMDRAELDLLG 197 + ++ G Sbjct: 574 PLVPVLTYMERNG 586 >gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25] gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25] Length = 929 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 24/178 (13%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 A DTET G+ ++ +L V + I + AP L + Sbjct: 341 AKLFAFDTETTGIDAQQAQLVGVSFAVQPHEAAYIPLTHAYIGAPEQLDRDTVLLALKPL 400 Query: 70 LVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121 L D + K+ + +FD+ +L G+ VR + F T + S + +H + Sbjct: 401 LEDPTKLKVGQHAKFDMNILANCAIGGDPAHGITVRGIAFDTMLESYVLNATATRHDMDS 460 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 K+ L + Q + A L+ +Q+ YAA D L +L Sbjct: 461 LAKKYLDYDTVAFQDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQALFAQLSA 518 >gi|145476719|ref|XP_001424382.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124391446|emb|CAK56984.1| unnamed protein product [Paramecium tetraurelia] Length = 510 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 25/168 (14%) Query: 20 VDAIAVDTETLGLMPRRDRL-------CIVQLSPGDGTVDII--RIAAGQKNAPNLVGML 70 +A+ D E + +L C VQ++ ++ ++ ++ +L Sbjct: 336 SNAVGYDCEHV---TPWTKLDLDGFKVCFVQIATSSHAFLFDYQKLKDSEEFKNDVRQLL 392 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS--------RLTRTYTNQHGLKDN 122 + KI + D+ + + + KI S ++ L Sbjct: 393 ENVGILKIGLSLKDDLKHTVNYLKL--KNI---KIGSIVELQSCFKVLEGDQKLRSLAYI 447 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + +SK S+W L Q YAA D + + L K Sbjct: 448 SEFYFKKKLSKFDTCSNWEYRPLRKAQAHYAALDAIISLQIYLSMVGK 495 >gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803] gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803] Length = 942 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 23/196 (11%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----MLVDEK 74 ++ DTET L L + S G + +K A L+ ++K Sbjct: 367 KQKSVCFDTETTSLNTLDAELVGIAFSWEAGKGFYLPFPEEKKEAQKLIEELRNFFENDK 426 Query: 75 REKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS- 132 EKI ++DI VL + V+ +F T IA L +H + + L Sbjct: 427 IEKIGQNLKYDIKVLDKY-KIDVKGALFDTMIAHYLINP-DMRHNMDVLAETYLNYTPQP 484 Query: 133 ---------KAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 K Q S D++ D+Q +YA D L+ F ++L+ L Sbjct: 485 ISELIGKKGKNQG----SMRDVALDKQTEYAVEDADITFQLKNLFEKELEEAETRKLFNE 540 Query: 183 -CCNFLMDRAELDLLG 197 + A+++L G Sbjct: 541 IEIPLVEVLADMELEG 556 >gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2] gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2] Length = 1013 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 73/223 (32%), Gaps = 30/223 (13%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL-----CI-------VQLS-PGDG 49 TI E A IA+DTET L P + L C+ V L G+G Sbjct: 404 TIVSFERLEAYIAEAIESGIIAIDTETSSLDPMQAELVGLSLCLAPGRAAYVPLRHRGEG 463 Query: 50 TVDII---RIAAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102 D+ + GQ ++ L ML KI +FD VL G+R+ PV Sbjct: 464 AGDLFGGADLVPGQLDSDETLARLKPMLEAPDVLKIAQNAKFDQLVLAQR-GIRLAPVDD 522 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGIN-----ISKAQQSSDWS-ADDLSDEQLQYAASD 156 T + S + HG+ ++ G + A D+ +Y+A D Sbjct: 523 TLLLSYVLDAGRTDHGMDVLAEKYFGHRPIQFGAVAGSGRTFIGFARVALDKATEYSAED 582 Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCN--FLMDRAELDLLG 197 L +L R + A ++ G Sbjct: 583 ADVTLRLWRVLKPRLAAE-RMSAVYETLERPMVETLARMERRG 624 >gi|217972253|ref|YP_002357004.1| 3'-5' exonuclease [Shewanella baltica OS223] gi|217497388|gb|ACK45581.1| 3'-5' exonuclease [Shewanella baltica OS223] Length = 320 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 12/143 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 + + DTET +R L ++Q++ D + + A + L +L Sbjct: 132 LQAEQVLGFDTET---RASFERGVQHPLSLIQIATAD-ACYLFQHAILGEQFTQLKTVLE 187 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 DE K+ R D L +G+ V A G + + LL I Sbjct: 188 DENILKVGVGLRSDAQALKRQWGINVTSKLDLNWALAQLGAEKE-MGTRQLVATLLSTRI 246 Query: 132 SK--AQQSSDWSADDLSDEQLQY 152 K S+W LS Q+ Y Sbjct: 247 DKPKKITLSNWQHVPLSGAQIDY 269 >gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891] gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891] Length = 931 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 348 LKAAEVFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPAQLERDWVLEQL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + T +AS + + +H + Sbjct: 408 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + L+ Q++ YAA D L + E + + + Sbjct: 467 FLQHSCISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKA 526 Query: 180 ATSCCNF 186 Sbjct: 527 IYQEIEV 533 >gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5] gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5] Length = 881 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 22/175 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA---------PNLV 67 A IA+DTET L + ++ G+ + I + L+ Sbjct: 312 AATAAVIAIDTETTSEHAVEADLVGISIAIGE-QAWYVPIDHAHTDTHRNMPTADVQKLI 370 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 L + ++D+ VL +P +F T IAS L HGL E Sbjct: 371 TALDRSDLLLVGQNIKYDLIVLQRHDMALPQPRLFDTMIASYLLDANRRSHGLDQLAVEF 430 Query: 127 LGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L + K D + +YA D AL F ++++ Sbjct: 431 LSHEMIAFKDVVPKGSTFRDVDIP--TAA--RYAGEDAAITLALYNLFAPRIEQE 481 >gi|68074623|ref|XP_679228.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56499925|emb|CAH95040.1| conserved hypothetical protein [Plasmodium berghei] Length = 661 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155 + T + ++ + Y L D + L +SK Q S+W+ LS EQ++YA Sbjct: 560 EPENII-TALPKKINKHYFK--SLNDLCFQFLRKKLSKKLQLSNWNKRPLSKEQIEYAGL 616 Query: 156 DVVHLHALRLQFTEK 170 D L + + ++ Sbjct: 617 DAYVLIPIEEKLIDE 631 >gi|162149305|ref|YP_001603766.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] Length = 943 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 51/146 (34%), Gaps = 32/146 (21%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA------------------ 58 AR A+DTET GL P R L + L+ G I +A Sbjct: 339 ARTAGFCAIDTETDGLDPLRAGLVGISLAVAPGRACYIPLAHTAEPPPPQLLPDLLLEPA 398 Query: 59 GQKNAPN--------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104 Q +AP+ L +L D KIF +FD+ VL + PV T Sbjct: 399 PQDDAPDPVGPQLETGLALAILGPLLADASVLKIFQNAKFDLLVLTRAGAPQPAPVDDTM 458 Query: 105 IASRLTRTYTNQHGLKDNLKELLGIN 130 + S + G+ + + LG Sbjct: 459 LISYAQFAGRHGQGMDELSRLYLGHT 484 >gi|322495545|emb|CBZ30850.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 413 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 62/174 (35%), Gaps = 24/174 (13%) Query: 13 AECAARYVDAIAVDTETLGL-----MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67 A + IA+D E P+ R+ +VQ D + + P V Sbjct: 96 AVEVLQRSRQIAIDVEAFCTPEAIKTPQLGRVSLVQTCS-DVVPVVFLFDVLSLSVPVFV 154 Query: 68 G----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTYTNQHGL 119 + DE K+F R DI L + + V ++ A + R+ + G+ Sbjct: 155 QAIRSVFHDETIRKLFFDCRRDIEALSTQMDLTPKRVLDLQLLFTAVQWKLRSVNRRSGM 214 Query: 120 KDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163 LK + GI+ + W L + L+YAA DV H+H L Sbjct: 215 TYVLKSVAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHFLEYAADDVRHIHLL 268 >gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] Length = 933 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L P + L + ++ G + AP L Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHALAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 411 APLLTDPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 470 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + A + Q+ +YAA D L KL Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLAAE 524 >gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 933 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L P + L + ++ G + AP L Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHALAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 411 APLLTDPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 470 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + A + Q+ +YAA D L KL Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLAAE 524 >gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 921 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 24/201 (11%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------------- 65 +AVDTET L + RL V LS G I G + + Sbjct: 337 QKGQVAVDTETDNLDATQARLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQMDLSLLVK 396 Query: 66 -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D KI ++D+ VL G+ V+P T + S + HG+ + Sbjct: 397 KLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELSL 455 Query: 125 ELLGIN-IS-K-----AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 IS K + + ++ + +YAA D L +L G + Sbjct: 456 LYFDHQPISFKSVCGTGKSAITFNHVPIPAA-TRYAAEDADITFRLWALLKPRLSSDGAT 514 Query: 178 DLATSCCNFL-MDRAELDLLG 197 + L A ++ G Sbjct: 515 RIYEEVDRPLPPVIARMEQAG 535 >gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256] Length = 933 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L P + L + ++ G + AP L Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHALAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 411 APLLTDPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 470 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + A + Q+ +YAA D L KL Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLAAE 524 >gi|82793580|ref|XP_728099.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23484273|gb|EAA19664.1| Streptococcus pyogenes AMV256, putative [Plasmodium yoelii yoelii] Length = 713 Score = 65.0 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 + T + ++ + Y L D + L +SK Q S+W+ LS EQ++YA D Sbjct: 613 PENII-TALPKKINKHYFK--SLNDLCFQFLRKKLSKKLQLSNWNKRPLSKEQIEYAGLD 669 Query: 157 VVHLHALRLQFTEK 170 L + + ++ Sbjct: 670 AYVLIPIEEKLIDE 683 >gi|221057512|ref|XP_002261264.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|194247269|emb|CAQ40669.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 738 Score = 65.0 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 L +++LG ++K Q S+WS L + Q+ YAA+D L L E+ Sbjct: 657 SLNHLCQQILGKKLNKQLQLSNWSRRPLMESQICYAATDAYVLIVLEQLLIER 709 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 8/76 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREK 77 I +D E + I+ L+ D I + +L + K Sbjct: 490 YIGIDVEWNR----NQKASIISLATMDHIYLIDLLVMDYNYKLLIQSFFKWLLENPFICK 545 Query: 78 IFHYGRFDIAVLFYTF 93 +F+ D+ +L F Sbjct: 546 LFYNFSCDMRILNSFF 561 >gi|72548558|ref|XP_843404.1| hypothetical protein [Leishmania major strain Friedlin] gi|323363921|emb|CBZ12927.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 412 Score = 65.0 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 59/174 (33%), Gaps = 24/174 (13%) Query: 13 AECAARYVDAIAVDTETLGL-----MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL- 66 A + IA+D E P+ R+ +VQ D + + P Sbjct: 95 AVGVLQRSRQIAIDVEAFCTPEAIKTPQLGRVSLVQTCS-DVVPVVFLFDVLSLSVPVFM 153 Query: 67 ---VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA----SRLTRTYTNQHGL 119 + DE K+F R DI L + R V ++ R+ + G+ Sbjct: 154 QAIRPLFHDETIRKLFFDCRRDIEALSTQMDLTPRRVLDLQLLFTSVQWKLRSVNRRSGM 213 Query: 120 KDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163 LK + GI+ + W L + L+YAA DV H+H L Sbjct: 214 TYVLKSVAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHFLEYAADDVRHIHLL 267 >gi|221114219|ref|XP_002154256.1| PREDICTED: similar to ZK1098.3 [Hydra magnipapillata] Length = 650 Score = 64.6 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 30/175 (17%) Query: 12 PAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA---- 63 + + I DTE +D++ +QL+ D + + ++ Sbjct: 477 AEKILFKPKQVIGFDTEWKPSFTRAGE-QDKVSTLQLAVIDKVFIVDMLQLYVADSAENA 535 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVL------FYTFGVRVRPVFC-TKIASRLTRTYT 114 + KI + D+ +L F + + +I+ ++ + Sbjct: 536 LREFFYKFFTSKDVVKIGYGIVGDLKILIGMFAYMKEFILNASNLVDLNEISEKILKYPV 595 Query: 115 ------------NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 N+ GL + LLG ++ K Q SDW LS Q+QYA +V Sbjct: 596 TNAYLYPVQSVQNEKGLSLLIYRLLGQSLDKTFQVSDWDKRPLSTNQIQYAGLNV 650 >gi|146101398|ref|XP_001469106.1| hypothetical protein [Leishmania infantum] gi|134073475|emb|CAM72206.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 412 Score = 64.6 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 62/174 (35%), Gaps = 24/174 (13%) Query: 13 AECAARYVDAIAVDTETLGL-----MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--- 64 A + IA+D E P+ R+ +VQ D + + P Sbjct: 95 AVGVLQRSRQIAIDVEAFCTPEAIKTPQLGRVSLVQTCS-DVVPVVFLFDVLSLSVPVFM 153 Query: 65 -NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA-SRL---TRTYTNQHGL 119 L + DE K+F R DI L + + V ++ + L R+ + G+ Sbjct: 154 QALRPVFHDETIRKLFFDCRRDIEALSTQMDLTPKRVLDLQLLFTALQWKLRSVNRRSGM 213 Query: 120 KDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163 LK + GI+ + W L + L+YAA DV H+H L Sbjct: 214 TYVLKSVAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHFLEYAADDVRHIHLL 267 >gi|313232841|emb|CBY09524.1| unnamed protein product [Oikopleura dioica] Length = 417 Score = 64.6 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 76/237 (32%), Gaps = 59/237 (24%) Query: 10 DIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNA 63 D P + A + + +D E L P ++ ++Q++ ++ I Sbjct: 117 DTPKDLAKVRRYIELANYLMIDQEGDQLGP-NGKITVIQINTYESPNCFLLDIKVAGDQE 175 Query: 64 PN-----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 + ML D K+ K F G D A L+ ++G++V + Y +H Sbjct: 176 LVKKDGWIRQMLEDPKKIKFFWGGSSDTANLYASYGIKVASFVDLQ-----LVEYHYRHK 230 Query: 119 LKDNL------------------------KELLGINISKAQQSSD---WSADDLSDEQLQ 151 L +LL K + +D W+ L D L+ Sbjct: 231 LAHLTDGFVEPEVKTHPLGLESAYKYFTDADLLRYKADKGKHKTDHHVWARRPLPDSLLK 290 Query: 152 YAASDVVHLHALRLQFTEKLQRLGR--------------SDLATSCCNFLMDRAELD 194 YA+ DV + L F + L+ +C + L ELD Sbjct: 291 YASFDVAAMRPLSHLFFKNLELWNWGKIEAAISVSTLSAWPRHRTCFSCLQS-VELD 346 >gi|268573492|ref|XP_002641723.1| Hypothetical protein CBG10060 [Caenorhabditis briggsae] Length = 729 Score = 64.6 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 31/199 (15%) Query: 4 IRVHEGDIPAECAA----RYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDII 54 I E ++ C + D+E ++ +QL D T I Sbjct: 368 IVKTESELEDLCVEMDEVENGTFVGYDSEFRPGHLTDTNTI--KVATIQLCFHDTTYLID 425 Query: 55 RIAAGQKNAPN------LVGMLVDEKREKIFHYGRFDIAVLF------YTFGVR-VRPVF 101 + + P+ + +K + + DI LF F + + Sbjct: 426 CVELENEKLPDKMWIRLYQSIFESKKLTVVGFDLKHDIEALFSIHPIRQQFKIEDIENFV 485 Query: 102 C----TKIASRL---TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 C ++I + + L + +ELL I I K++Q+ +W + L Q+ YA Sbjct: 486 CVRRFSEILMEIDINILNLSKSCRLVNLSEELLDITIDKSEQNGNWMSRPLRKSQIVYAT 545 Query: 155 SDVVHLHALRLQFTEKLQR 173 D V + + + E Q+ Sbjct: 546 MDSVVVLKVFEKVLELAQK 564 >gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311] gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311] Length = 994 Score = 64.6 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 25/176 (14%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIAAGQKNAPNLVGM--- 69 +A+DTET L P R +L + + G G+ D+ I L + Sbjct: 396 PVALDTETTDLNPFRAQLVGIGMCWGPGSDDLAYIPVSHQGDPIPDQLPLETVLQALAPW 455 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L + K ++D +L V T +A R +HGL + GI Sbjct: 456 LASGEHPKALQNAKYDRLILLRHGLPLAGVVMDTLLA-DYLRDAAAKHGLDAMAQRDYGI 514 Query: 130 NI---------SKAQQSSDWSADDL-SDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + +K ++S++S L S Q Y DV L + ++L+ LG Sbjct: 515 SPTLFSDLVGKAKEGKASNFSEVPLESAAQ--YCGMDVHLTRKLAIDLNQQLEALG 568 >gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] Length = 948 Score = 64.6 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 65/190 (34%), Gaps = 17/190 (8%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----AGQKNAPNLVGMLVDEKREK 77 ++ DTET L P + L + S + QK L E+ EK Sbjct: 376 SVCFDTETTDLDPLQAELVGIAFSWEKTKGFYVPFPSEKEEVQKLIEALRPFFEAEEIEK 435 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130 I ++DI VL +F T IA L +H + + L Sbjct: 436 IGQNLKYDIKVLAKYDVEVKGKLFDTMIAHYLINP-DMRHNMDVLAETYLNYTPVSIEEL 494 Query: 131 ISKA--QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFL 187 I K Q S AD D+Q +YA D L+ F ++L L + Sbjct: 495 IGKKGKNQKS--MADVPVDQQTEYAVEDADVTLQLKEHFQKELGEANTQKLFDEIEIPLV 552 Query: 188 MDRAELDLLG 197 A+++L G Sbjct: 553 QVLADMELEG 562 >gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 929 Score = 64.6 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 18/173 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP Sbjct: 347 LKQAEVFAFDTETDGLDTLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVLALF 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK KI +FD V+ + +R + F T + S + + +H + + Sbjct: 407 KPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L ++ + + L+ Q+ YAA D L + KLQ Sbjct: 466 YLSHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHLHQKLWGKLQ 518 >gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28] gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90] Length = 978 Score = 64.6 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T+ H Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTDSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] Length = 971 Score = 64.6 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76 + ++DTET G P L + S + + + A + A E Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEGAL 458 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 K+ ++D+ VL P+F T +A + + +H + + L I+I Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q+ + DLS E + +YA D L+ ++L+ L Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573 Query: 185 NFLMDRAELDLLG 197 + A ++ G Sbjct: 574 PLVPVLAYIERNG 586 >gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] Length = 995 Score = 64.6 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 60/188 (31%), Gaps = 32/188 (17%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA---------GQKNAP--- 64 AR +A DTET L L + L+ G I + G N P Sbjct: 390 AREAGRVAFDTETTDLSALDAELVGISLAVAPGEACYIPLGHTGPSGDLFGGDDNRPQQL 449 Query: 65 -------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + +L D KI ++D V+ G+ + T + S QH Sbjct: 450 AANEALALIGPLLEDPSVLKIGQNIKYDALVMKRR-GIEIVSFDDTMLLSYALDGGRGQH 508 Query: 118 GLKDNLKELLGI---------NISKAQQSSD--WSADDLSDEQLQYAASDVVHLHALRLQ 166 G+ + LG + + SD ++A L +YAA D L + Sbjct: 509 GMDALAERHLGHMCMTFAQAMGHAPGAKKSDKTFAAMPLDKA-TEYAAEDADVTMRLWMA 567 Query: 167 FTEKLQRL 174 +L Sbjct: 568 LKPRLAAE 575 >gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] Length = 971 Score = 64.6 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76 + ++DTET G P L + S + + + A + A E Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEGAL 458 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 K+ ++D+ VL P+F T +A + + +H + + L I+I Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q+ + DLS E + +YA D L+ ++L+ L Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573 Query: 185 NFLMDRAELDLLG 197 + A ++ G Sbjct: 574 PLVPVLAYIERNG 586 >gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] Length = 971 Score = 64.6 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76 + ++DTET G P L + S + + + A + A E Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEGAL 458 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 K+ ++D+ VL P+F T +A + + +H + + L I+I Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q+ + DLS E + +YA D L+ ++L+ L Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573 Query: 185 NFLMDRAELDLLG 197 + A ++ G Sbjct: 574 PLVPVLAYIERNG 586 >gi|145352962|ref|XP_001420802.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581037|gb|ABO99095.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 257 Score = 64.6 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L + E LG + K Q S+W A L+ Q+ YAA D L + + Sbjct: 62 SLASIVSETLGYALDKRCQRSNWDARPLAQAQITYAALDAEVLLDIASRL 111 >gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] Length = 978 Score = 64.6 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMAPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|322704992|gb|EFY96581.1| putative Werner syndrome helicase [Metarhizium anisopliae ARSEF 23] Length = 545 Score = 64.6 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 40/183 (21%) Query: 22 AIAVDTETLGLMPR-------RDRLCIVQLSPGD--GTVDIIRIAAGQKN--APNLVGML 70 + D E P R+ + ++Q++ G + A G+ + AP L ++ Sbjct: 201 VLGFDLE---WFPYASRSSGTRENVSLIQIASPGRIGLFHVAMFAKGEDDLVAPALRTIM 257 Query: 71 VDEKREKI-FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-------------- 115 D K+ H D + GV+V+ VF L+ Y Sbjct: 258 EDPNVSKVGVHIQG-DCTRMKNYLGVQVQGVF------ELSHLYKQVKYTATKTPKLINK 310 Query: 116 -QHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L + ++L + + K +SS+W L +Q+ YAASD L K + Sbjct: 311 VTVALSTQVHDILKLPLFKGDIVRSSNWMKR-LDYKQILYAASDAYAGIQLYHVLDSKRK 369 Query: 173 RLG 175 RL Sbjct: 370 RLN 372 >gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163] gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163] Length = 929 Score = 64.6 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 18/173 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D A DTET GL L + + G + +A +AP+ L Sbjct: 347 LKLADVFAFDTETDGLDTLTANLIGLSFAIKPGEAAYLPLAHDYLDAPDQLDRATVLALL 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK KI +FD V+ + +R + F T + S + + +H + + Sbjct: 407 KPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L ++ + + L+ Q+ YAA D L KLQ Sbjct: 466 YLKHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHLHQTLWGKLQ 518 >gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] Length = 864 Score = 64.6 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 20/158 (12%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR---IAAGQKNAPNLVGMLVDEK 74 R +AV+ +T G P L + SP G + + + +L +L D Sbjct: 314 RAAGVLAVELKTDGRNPMDAHLIGIGFSPSRGEGFYVPAEVLEKSPEVKSDLKAVLADPG 373 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 KI H G++ + G+ F T +A+ L ++ L+ + + LG+ + Sbjct: 374 ITKIIHDGKY-ARTVLAKIGMDFVYNFDTMLAAYLLDPSKPRYDLESVVFDNLGVELKGT 432 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + D V +L L+ +EKL+ Sbjct: 433 E---DPGRR-------------VAYLIPLKEIMSEKLK 454 >gi|308502918|ref|XP_003113643.1| hypothetical protein CRE_26057 [Caenorhabditis remanei] gi|308263602|gb|EFP07555.1| hypothetical protein CRE_26057 [Caenorhabditis remanei] Length = 752 Score = 64.6 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 7/82 (8%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-- 175 GL ++LLG + K +Q S W L QL+YAA D + L + + +LG Sbjct: 670 GLSYICEKLLGRPLDKTEQCSVWDRRPLRHLQLRYAAMDAYCMLMLYDKCKDVFAKLGYD 729 Query: 176 -RSDLATSCCNFLMDRAELDLL 196 R LA R L LL Sbjct: 730 VREFLAKQ----TPIRISLPLL 747 >gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] Length = 928 Score = 64.6 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 67/205 (32%), Gaps = 20/205 (9%) Query: 13 AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65 AR D D ET L + + LS G I +A +AP Sbjct: 340 DAWLARLGEADIFCFDLETTSLNYMEADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRA 399 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L + D + KI ++DI+VL + T +AS + +H + Sbjct: 400 SVLAALKPLWEDPAKAKIGQNLKYDISVLARYDIEVAGRLEDTMLASYVLNATATRHDMD 459 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 + LG ++ + A L+ +Q+ YA DV L + ++ Sbjct: 460 SLALKYLGEKTISFEEIAGKGAKQLTFDQIALEQAAPYACEDVDITLRLHRELRPRVDGE 519 Query: 175 GRSDLATS--CCNFLMDRAELDLLG 197 GR + + ++ G Sbjct: 520 GRLAAVLDDIELPLVPVLSRMERNG 544 >gi|255086533|ref|XP_002509233.1| predicted protein [Micromonas sp. RCC299] gi|226524511|gb|ACO70491.1| predicted protein [Micromonas sp. RCC299] Length = 519 Score = 64.6 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 14/134 (10%) Query: 37 DRL-CIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY 91 RL ++Q P V + +L +LVD K+ R D + Sbjct: 167 PRLTSLMQFCYRPRPPAKAVCFLLRLCLTGVTESLRELLVDPTIVKVGLNARGDAHKIRR 226 Query: 92 TFGVRVRPV-----FCTKIASRLTRTY--TNQHGLKDNLKELLGINISK--AQQSSDWSA 142 F V V V F + A+R + L ++ L + K + + SDW A Sbjct: 227 DFNVAVEGVLELRDFARERAARPGHPGSAPESYSLAALVEWQLSHRLPKHASSRMSDWEA 286 Query: 143 DDLSDEQLQYAASD 156 L+++Q+ YAA D Sbjct: 287 PKLTEDQVTYAALD 300 >gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164] gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164] Length = 919 Score = 64.6 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 18/168 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVD 72 A+DTET L R + ++ + +A AP + +L + Sbjct: 347 FAIDTETTSLDYRVAEMVGFSVAFDAKDAYYVPLAHDYAGAPEQLNREQVLAQIKPILEN 406 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 ++ EKI H+ ++D + G+ ++ F T +AS + + +HG+ D + L Sbjct: 407 DQVEKIGHHLKYDAHIFANH-GIELKGWFFDTMLASYVLNSVATRHGMDDVARLYLSHLT 465 Query: 132 SKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 + +Q + A S Q++ YAA D + L EKL+ Sbjct: 466 TTFEQVAGKGAKQKSFNQIELEVASPYAAEDAHVTYRLYEVLAEKLKA 513 >gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152] gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152] Length = 945 Score = 64.2 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 60/181 (33%), Gaps = 24/181 (13%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEK 74 ++ DTET GL L + S G + Q+ E Sbjct: 370 QQPSVCFDTETTGLKALEVELIGIAFSYEIGKGYYVSFPENQEETKAILEEFRPFFESEM 429 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130 EK+ H ++DI VL +F T IA L +H + + L + Sbjct: 430 IEKVGHNLKYDIKVLSNYNMPVKGKLFDTMIAHYLINP-DMRHNMDVLAETYLNYHPVSI 488 Query: 131 ---ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 I K + LS +Q +YA D + L+ FT++L ++L Sbjct: 489 TELIGKK------GKNQLSMRVVPIKDQTEYAVEDADITYQLKQHFTKELDSGNVTELFN 542 Query: 182 S 182 Sbjct: 543 K 543 >gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1] gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1] Length = 922 Score = 64.2 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 25/190 (13%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E + A + AVDTET L L + + G + +A AP Sbjct: 327 LTEAQLDEWIAKLKQASLFAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAP 386 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L D K +K+ ++DI+VL G+ ++ V F T + S + + Sbjct: 387 QQLDKQFALEKLRPILEDAKLKKVGQNLKYDISVLANA-GITLQGVAFDTMLESYVFNSV 445 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALR 164 ++H + + LG K D A L+ Q+ YAA D L Sbjct: 446 ASRHDMDGLALKYLGH---KNIAFEDIAGKGAKQLTFNQISLETAAPYAAEDADITLRLH 502 Query: 165 LQFTEKLQRL 174 +L++ Sbjct: 503 QHLWPRLEKE 512 >gi|302911223|ref|XP_003050445.1| hypothetical protein NECHADRAFT_48479 [Nectria haematococca mpVI 77-13-4] gi|256731382|gb|EEU44732.1| hypothetical protein NECHADRAFT_48479 [Nectria haematococca mpVI 77-13-4] Length = 542 Score = 64.2 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 22/183 (12%) Query: 21 DAIAVDTETLG--LMPRRDR--LCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74 + D E + P R + ++QL+ G + + AP ++ DE Sbjct: 187 KVLGFDLEWMTWARKPHGPRANVSLIQLASPSRIGLFHVALFRSDDYVAPTFKKIMEDES 246 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR----TYTNQ-----HGLKDNLKE 125 K+ + D L GV + +F +L + ++ L +E Sbjct: 247 VTKVGVAIKGDCTRLKTHLGVETKGIFELSHMYKLVKYSKLGQYDRINKSLISLAIQAEE 306 Query: 126 LLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG----RSDL 179 G+ + K +SS+W + LS +Q+ Y+ASD L ++ Q+L R + Sbjct: 307 FFGLPLYKGDSVRSSNWMS-LLSAKQVTYSASDAYAGLNLFYVLDQERQKLDPCPPRPEF 365 Query: 180 ATS 182 A Sbjct: 366 AEK 368 >gi|322503119|emb|CBZ38203.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 412 Score = 64.2 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 24/174 (13%) Query: 13 AECAARYVDAIAVDTETLGL-----MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--- 64 A + IA+D E P+ R+ +VQ D + + P Sbjct: 95 AVGVLQRSRQIAIDVEAFCTPEAIKTPQLGRVSLVQTCS-DVVPVVFLFDVLSLSVPVFM 153 Query: 65 -NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTYTNQHGL 119 L + DE K+F R DI L + R V ++ A + R+ + G+ Sbjct: 154 QALRPVFHDETIRKLFFDCRRDIEALSTQMDLTPRRVLDLQLLFTAVQWKLRSVNRRSGM 213 Query: 120 KDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163 LK + GI+ + W L + L+YAA DV H+H L Sbjct: 214 TYVLKSVAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHFLEYAADDVRHIHLL 267 >gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109] gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109] Length = 986 Score = 64.2 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 62/195 (31%), Gaps = 31/195 (15%) Query: 7 HEGDIPAE-----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-- 59 E D+ A +A DTET L P R L + + G+ + I G Sbjct: 371 TETDLDALVQRLMACTDSGLPVAFDTETTDLNPFRAELVGIGICWGETLDALAYIPLGHK 430 Query: 60 --QKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 + ++P L L K ++D +L V T +A Sbjct: 431 GNEDSSPEQLPLETVLTALAPWLASSNHPKTLQNAKYDRLILLRHGVALEGVVIDTLLA- 489 Query: 108 RLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 R +HGL+ + G + K Q +D L L Y DV Sbjct: 490 DYLRDAAAKHGLELMAEREFGFQPTAFTDLVGKKQTFAD---VPLEPASL-YCGMDVHVT 545 Query: 161 HALRLQFTEKLQRLG 175 L L +L+ +G Sbjct: 546 RRLALLLRHQLEAMG 560 >gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK] gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK] Length = 922 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 24/178 (13%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------- 65 D +A DTET GL L V + +G + +A +AP Sbjct: 337 ATLTAADVVAFDTETDGLDYMTANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVLA 396 Query: 66 -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123 L +L D + K+ +FD+++L + ++ + + T + S + + +H + Sbjct: 397 QLKPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKYDTMLESYVFNSVVGRHDMDSLA 455 Query: 124 KELL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L I+ + L+ Q+ YAA D L EK++ Sbjct: 456 LRYLEHKNISFEEVAGK---GKKQLTFNQIDLDVAGPYAAEDADITLRLHNLLNEKVE 510 >gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661] gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661] Length = 928 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A D ET L + + + G + +A +AP L Sbjct: 345 LKTSSLFAFDLETDSLDTLSANIVGISFAIEPGKAAYLPVAHDYLDAPAQLDRNSVLERL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D K+ ++D VL + ++ + F T + S + ++H + Sbjct: 405 KPLLEDPALLKVGQNLKYDRGVLKNY-DIELQGIKFDTMLESYALSSVGSRHDMDTLSSR 463 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL-GRSD 178 L ++ + L+ Q+ YAA D L L+ +L++ G + Sbjct: 464 WLNHKTVSFEEIAGKGKKQLTFNQIDLEQAAHYAAEDADVTLQLHLKMWPELEKEQGPKE 523 Query: 179 LATS-CCNFLMDRAELDLLG 197 + + L + ++ G Sbjct: 524 VFENIEMPLLTVISRIERNG 543 >gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] Length = 997 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 65/241 (26%), Gaps = 61/241 (25%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65 A +A D ET GL P RL + + + + + Sbjct: 386 CACANGVVAFDCETDGLHPHDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTCARS 445 Query: 66 --------------------------------LVGMLVDEKREKIFHYGRFDIAVLFYT- 92 L + DE + H G+FD V+ Sbjct: 446 TNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAG 505 Query: 93 -FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADD 144 F +F T +A+ L +G+ I ++K Q + Sbjct: 506 VFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFA---HVP 562 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWENVDI 203 ++YAA D L +L+ G + + L A + E V I Sbjct: 563 YECA-VRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARM-----EEVGI 616 Query: 204 F 204 F Sbjct: 617 F 617 >gi|307104422|gb|EFN52676.1| hypothetical protein CHLNCDRAFT_54323 [Chlorella variabilis] Length = 529 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 22/183 (12%) Query: 3 TIRVHEGDIPAECAA----RYVDAIAVDTE------TLGLMPRRDRLCIVQLSPGDGTVD 52 T+ EG +PA AA +A+D E G R+ ++QL+ V Sbjct: 133 TVVAAEGQLPAALAALRRSMQDSCVAIDLEWKPEGWAGGGPT---RVALMQLASATVAVL 189 Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKI-FHYGRFDIAVLFYTFGVRVRPVF----CTKIAS 107 + G + P+L L D I F + D + TFG R +F + Sbjct: 190 VRVCRLGFRMPPSLRAFLSDPDLTFIGFSWDSSDEVKMRQTFGEGRRELFPRFLDLQQVG 249 Query: 108 RLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 + GL K +LG + K S+W A LS Q+QY A D V + Sbjct: 250 ASLGYHG--FGLAALTKRVLGFALPKCRKVTMSNWEARQLSARQVQYGALDAVVTGHIFR 307 Query: 166 QFT 168 Sbjct: 308 GLR 310 >gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema pallidum] Length = 997 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 65/241 (26%), Gaps = 61/241 (25%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65 A +A D ET GL P RL + + + + + Sbjct: 386 CACANGVVAFDCETDGLHPHDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTCARS 445 Query: 66 --------------------------------LVGMLVDEKREKIFHYGRFDIAVLFYT- 92 L + DE + H G+FD V+ Sbjct: 446 TNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAG 505 Query: 93 -FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADD 144 F +F T +A+ L +G+ I ++K Q + Sbjct: 506 VFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFA---HVP 562 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWENVDI 203 ++YAA D L +L+ G + + L A + E V I Sbjct: 563 YECA-VRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARM-----EEVGI 616 Query: 204 F 204 F Sbjct: 617 F 617 >gi|71662929|ref|XP_818464.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70883717|gb|EAN96613.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 387 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 24/174 (13%) Query: 19 YVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----ML 70 +IA+D E + R+ ++Q V + AP V L Sbjct: 70 KARSIALDIEAF-CTTEQAKQLGRISLLQACSDAKPV-VFLFDVLTLTAPTFVKSVEPFL 127 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTYTNQHGLKDNLKEL 126 + K+ R D+ L G++ V ++ A + R+ + G+ LK + Sbjct: 128 RNRGIRKLLFDCRRDVEALSSQLGLKPEGVLDLQVFFTAIQWKLRSVNRRSGMTYVLKSV 187 Query: 127 LGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G+ W L D L+YAA DV H+ L EK Sbjct: 188 AGLTRQDGDSAVQAAMTLGNRPVWDIRPLPDHFLEYAADDVRHILLLANHLVEK 241 >gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7] gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7] Length = 922 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 27/196 (13%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E + A + +AVDTET L L + + G + +A AP Sbjct: 327 LTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAP 386 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L D K +K+ ++DI+VL G++++ V F T + S + + Sbjct: 387 QQLDKQTALEKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLKGVVFDTMLESYVFNSV 445 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALR 164 ++H + + LG K D A L+ Q+ YAA D L Sbjct: 446 ASRHDMDGLALKYLGH---KNIAFEDIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLH 502 Query: 165 LQFTEKLQRLGRSDLA 180 +L++ ++LA Sbjct: 503 QHLWPRLEKE--TELA 516 >gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185] gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185] Length = 928 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIESGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALDEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] Length = 945 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 23/195 (11%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKR 75 D +++DTET + L + S I I + + A + ++K Sbjct: 372 SDILSLDTETTSTNTMQAELVGLSFSIEPNKAFYIAIPSDRDKAQKMVNIFKPLYEEDKI 431 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 KI ++D VL G+ ++ +F T IA L + + H + + LL I+I Sbjct: 432 LKIGQNIKYDYEVLAQY-GINIKGKMFDTMIAHYLIQPELH-HNMDYMAETLLNYKTIHI 489 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K Q+ + +LS + +YA D L KL+ + L Sbjct: 490 DELIGAKGKEQK----NMRNLSPTSIYEYACEDADITLQLYNVLLPKLKDVNAEKLFWDI 545 Query: 183 CCNFLMDRAELDLLG 197 + A +++ G Sbjct: 546 EMPLVRVLANMEMNG 560 >gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193] gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193] Length = 935 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 61/183 (33%), Gaps = 28/183 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNA----------- 63 A +A+DTET GL L V L GT I + G + Sbjct: 345 AYERGYVAIDTETTGLDAMVVDLVGVSLCVEPGTACYIPLTHKQGGDDLFGGEGLAEGQM 404 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L ML D KI ++D +L G+ V P+ T + S + H Sbjct: 405 PLEQALEMLKPMLEDPAVLKIGQNMKYDAKILHRY-GIDVAPIDDTMLMSYALHAGEHNH 463 Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G+ + L + + + + ++D + YAA D L F + Sbjct: 464 GMDILSERYLDHKPIPIKPLLGTGKSAITFDRVPIADA-VPYAAEDADITLRLWQHFKPE 522 Query: 171 LQR 173 L + Sbjct: 523 LHQ 525 >gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 972 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 19/111 (17%) Query: 78 IFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI- 131 +FH +FD+ VL TFG + + T IA+ + GL + + +LL + Sbjct: 459 VFHNAKFDLHVLARTFGLTQKQIDSANIIDTLIAAWMLSPGQTGLGLDNQVMQLLQHEMI 518 Query: 132 ---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 K + + D +Y A D V+ L KLQ+ Sbjct: 519 PIENLIGRGKKQITF---NRTPIKDA-TEYGAEDAVYTLRLWAPLRAKLQK 565 >gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893] gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893] Length = 911 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 19/198 (9%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 T+ + ++ + + A DTET L + V + G + Sbjct: 313 TVVTDQAELDSWIDRLKKAPLFAFDTETTSLRYMDADVVGVSFAIEPGEAAYVPFGHDYM 372 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLT 110 AP L +L D K+ K+ ++D VL G+ + + T + S + Sbjct: 373 GAPEQLDRDTVLSQLKPLLEDPKKAKLGQNLKYDKNVLANH-GINLNGIAEDTMLESYVL 431 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALR 164 + ++H + + LG + + A L+ Q++ YAA D L Sbjct: 432 NSVGSRHDMDSLAMQYLGEQTITFESIAGKGAKQLTFNQIELEQAGPYAAEDADITLRLH 491 Query: 165 LQFTEKLQRLGRSDLATS 182 +L++ GR Sbjct: 492 QALRPQLEKTGRLQEVYE 509 >gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str. Chicago] Length = 1015 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 65/241 (26%), Gaps = 61/241 (25%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65 A +A D ET GL P RL + + + + + Sbjct: 404 CACANGVVAFDCETDGLHPHDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTCARS 463 Query: 66 --------------------------------LVGMLVDEKREKIFHYGRFDIAVLFYT- 92 L + DE + H G+FD V+ Sbjct: 464 TNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAG 523 Query: 93 -FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADD 144 F +F T +A+ L +G+ I ++K Q + Sbjct: 524 VFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFA---HVP 580 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWENVDI 203 ++YAA D L +L+ G + + L A + E V I Sbjct: 581 YECA-VRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARM-----EEVGI 634 Query: 204 F 204 F Sbjct: 635 F 635 >gi|71416479|ref|XP_810270.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874777|gb|EAN88419.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 387 Score = 64.2 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 24/174 (13%) Query: 19 YVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----ML 70 +IA+D E + R+ ++Q V + AP V L Sbjct: 70 KARSIALDIEAF-CTTEQAKQLGRISLLQACSDAKPV-VFLFDVLTLTAPTFVKSVEPFL 127 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTYTNQHGLKDNLKEL 126 + K+ R D+ L G++ V ++ A + R+ + G+ LK + Sbjct: 128 RNRGIRKLLFDCRRDVEALSSQLGLKPEGVLDLQVFFTAIQWKLRSVNRRSGMTYVLKSV 187 Query: 127 LGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G+ W L D L+YAA DV H+ L EK Sbjct: 188 AGLTRQDGDSAVQAAMALGNRPVWDIRPLPDHFLEYAADDVRHILLLANHLVEK 241 >gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] Length = 945 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 30/189 (15%) Query: 15 CAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------- 62 AR +A +A+DTET L R L V L+ G I + G + Sbjct: 350 WIARAFEARVVAIDTETSALDAMRADLVGVSLALGPNDACYIPLGHGGSDMFAEKPLQVD 409 Query: 63 ----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 L +L + K+ ++D+ +L G+ V P+ T + S ++ G Sbjct: 410 RAEALAALKPLLESDAVLKVGQNIKYDLNILARQ-GIMVSPIDDTMVMSFCLDAGRSETG 468 Query: 119 LK-----DNLKELLGINISK-------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 L + + L K +++ ++ L+D +YAA D L Sbjct: 469 LAGHGMDELSERHLLHTTMKFKELCGTGKKAISFAEVPLADA-TRYAAEDADVTWRLHRL 527 Query: 167 FTEKLQRLG 175 F +L G Sbjct: 528 FQPRLAGEG 536 >gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] Length = 920 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNL 66 A DTET L R+ V + G+ + + L Sbjct: 338 LEAAPYFAFDTETTSLNYMEARVVGVSFAVEAGSAAYVPFGHDYVGVEQQLSEDWVLAQL 397 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D R K+ ++D VL G+ + + F T + S + + +H + ++ Sbjct: 398 KPLLEDSSRAKVGQNLKYDRNVLANH-GIELNGIQFDTMLESYVLNSTATRHDMDSLARK 456 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + K + + A L+ Q+Q YAA D L KL Sbjct: 457 YLDVGTIKFEDIAGKGAKQLTFNQIQLQQAGPYAAEDADITLQLHEVLWPKLAA 510 >gi|224051282|ref|XP_002200512.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 2 [Taeniopygia guttata] Length = 607 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 22/155 (14%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVDEKRE 76 + +D E + + G ++R+ A+GQ L+ ++ D Sbjct: 105 PVLGIDCEWM--------------ASSSGLCILVRLPRLVASGQTLPKTLLDIMADSAVL 150 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGINISKA 134 K+ D L + +G+ V+ + + R N LK +++L + K+ Sbjct: 151 KVGVGCWEDACKLLHDYGLAVKGSMDLRYLAMRQRKDLLHNCLSLKSLAEKVLNFPLDKS 210 Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + S+W A++L+ +Q+ YAA D A+ Sbjct: 211 PHVRCSNWEAEELTQDQVLYAARDAQVSVAVFFHL 245 >gi|2645409|gb|AAB87366.1| homolog of human Werners syndrome protein [Mus musculus] Length = 643 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 12/128 (9%) Query: 36 RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91 R R+ ++QL + + I++ L +L ++ +K I L Sbjct: 88 RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143 Query: 92 TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V++ T +A+ + L +K +LG + K+ + S+WS L+++ Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202 Query: 149 QLQYAASD 156 Q YAA+D Sbjct: 203 QKLYAATD 210 >gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686] Length = 995 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 402 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 460 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 461 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 519 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 520 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 577 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 578 RLAAEGLMSVYE 589 >gi|325114680|emb|CBZ50235.1| hypothetical protein NCLIV_007100 [Neospora caninum Liverpool] Length = 1189 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L++ +++L ++ KA+Q S+W+ L+ Q +YAA D L L+R G Sbjct: 1044 SLQEMCRQVLHADLDKAEQRSNWNMRPLTVSQTRYAALDAYVLI----LLEAALRRHGW 1098 >gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840] gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840] Length = 978 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T +H Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGRH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|157963247|ref|YP_001503281.1| 3'-5' exonuclease [Shewanella pealeana ATCC 700345] gi|157848247|gb|ABV88746.1| 3'-5' exonuclease [Shewanella pealeana ATCC 700345] Length = 292 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 67/185 (36%), Gaps = 23/185 (12%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETL-----GLMPRRDRLCIVQLSPGDGTVDI-IRIA 57 + + A I DTET G + ++Q++ + ++ Sbjct: 96 VVTPDSLTAAVADIEAQTCIGFDTETAATFEKGRRNPNP-ISLIQIATPTHSYLFRMQGE 154 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-----TKIASRLTRT 112 L +L +K K+ R D+ + F + V + ++ + Sbjct: 155 NIVPFMAALAPILSGDKLLKVGIGLRSDLNAMKRDFEISVNSMLDLNWLMNQLGA----- 209 Query: 113 YTNQHGLKDNLKELLGINISKAQ--QSSDW---SADDLSDEQLQYAASDVVHLHALRLQF 167 Q G + +L + + K++ S+W A+ LS+ QLQYAA+D + Sbjct: 210 -PKQLGTQQMAATVLALKLPKSKKVTLSNWAKPLAEPLSELQLQYAAADAFVALDILYGL 268 Query: 168 TEKLQ 172 E+L+ Sbjct: 269 LEQLR 273 >gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1] gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1] Length = 978 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGVLAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145] gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145] Length = 920 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 18/170 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGML 70 A DTET L R ++ ++ + +A + AP + +L Sbjct: 346 KRFAFDTETTSLDYRIAQIVGFSVAFDAQNAYYVPLAHDYEGAPEQLNREVILAQIKPIL 405 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI- 129 DE +KI H+ ++D VL F T +AS + + +HG+ D + L Sbjct: 406 EDESVKKIGHHLKYDAHVLENHGIHLAGWYFDTMLASYVLNSVATRHGMDDVARLYLSHL 465 Query: 130 ------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 K + ++ L YAA D + L + KLQ Sbjct: 466 TTTYEQVAGKGAKQKTFNQIPLETA-AHYAAEDAHVTYRLYEVLSSKLQA 514 >gi|113676437|ref|NP_001038930.1| exonuclease 3'-5' domain-containing protein 1 [Danio rerio] gi|123911622|sp|Q0P3U3|EXD1_DANRE RecName: Full=Exonuclease 3'-5' domain-containing protein 1; AltName: Full=Exonuclease 3'-5' domain-like-containing protein 1 gi|112418997|gb|AAI22449.1| Zgc:154068 [Danio rerio] Length = 378 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 30/170 (17%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPR----RDRLCIVQLSPGDGTVDIIRIAAGQK 61 +HE PA + D I + G ++RLC +Q++ + G Sbjct: 120 LHEKFGPAVMHIQEQDVIGI-----GADVYGQSGQERLCWLQVATKKVVYLFDILLLGGP 174 Query: 62 NAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 N L +L + K+ H R L F V++ VF T++A L + G Sbjct: 175 AFKNGLSMILENTHILKVLHDCRCITRCLRTEFRVQLTNVFDTQVA-ELLLFFNESGGFL 233 Query: 121 ----DNLKELLGINI-----------SKAQQSSD----WSADDLSDEQLQ 151 +L ELL +++ SK QQS + W + L Sbjct: 234 PDRPASLPELLQLHLRLTTAEIQPLCSKQQQSRECVQLWYVRPCPPDLLS 283 >gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] Length = 607 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 29/185 (15%) Query: 16 AARYVDAIAVDTETLGLMPRRDRL-----CIV-----------QLSPGDGTVDIIRIAAG 59 A R +A DTET L + L +V +++ GD R+ G Sbjct: 15 AIRAQGYVAFDTETTSLDEMQAELVGVSLALVPGRAAYIPLGHRMAAGDDLFADNRLTEG 74 Query: 60 QKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 Q L +L D KI ++D+ ++ GV + PV T + S + Sbjct: 75 QLPLEVVLNALRPVLEDPAVLKIGQNIKYDVKIMARY-GVHLAPVDDTMLLSYALHAGLH 133 Query: 116 QHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 HG+ + + L I + + + + + YAA D L F Sbjct: 134 NHGMDELSERYLNHRPIPIKELIGSGKSAVTFDHVPVEKA-VAYAAEDADITLRLWQHFK 192 Query: 169 EKLQR 173 +L + Sbjct: 193 PQLPQ 197 >gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] Length = 1016 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 70/220 (31%), Gaps = 41/220 (18%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII-------------------- 54 AR +A DTET L + L L+ D T D Sbjct: 410 ADARATGLVAFDTETTSLDAMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVGDL 469 Query: 55 --------RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 +I G A L +L DE K+ ++D +L +G+ R T + Sbjct: 470 LGGGLAENQIPMGDALA-RLKALLEDESILKVAQNLKYD-YLLMKRYGIETRSFDDTMLI 527 Query: 107 SRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVV 158 S + T HG+ ++ LG K S +++ D YAA D Sbjct: 528 SYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GKANVTFDLVDIDRATHYAAEDAD 585 Query: 159 HLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L L +L G + + L A ++ G Sbjct: 586 VTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 625 >gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170] gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170] Length = 944 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 27/198 (13%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEK 74 +++ DTET GL P L + S G I + A L E Sbjct: 369 KQNSVCFDTETTGLNPLTAELVGIAFSWEAGKGFYIPFPEDKNQAQEIIETLRPFFESEM 428 Query: 75 REKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130 EKI ++DI VL + + ++V+ F + +A L +H + + L Sbjct: 429 IEKIGQNLKYDIKVL-HKYNIQVKGKFFDSMLAHYLINP-DMRHNMDVLSETYLNYTPVS 486 Query: 131 ----ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 I K + LS ++Q +YA D + L F +L +L Sbjct: 487 ITELIGKK------GKNQLSMRDVPLEKQTEYAVEDADITYQLAQHFRPELAEASTEELF 540 Query: 181 -TSCCNFLMDRAELDLLG 197 T L A+++L G Sbjct: 541 NTIEIPLLHVLADMELEG 558 >gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4] gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4] Length = 971 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76 + ++DTET G P L + S + + + A + A E Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEGAL 458 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 K+ ++D+ VL P+F T +A + + +H + + L I+I Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q+ + DLS E + +YA D L+ ++L+ L Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADITLKLKNILEQELKTNDAEKLFYEIEM 573 Query: 185 NFLMDRAELDLLG 197 + A ++ G Sbjct: 574 PLVPVLAYIERNG 586 >gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] Length = 933 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 72/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + D A DTET GL L + + G + +A +AP L Sbjct: 350 LKKADVFAFDTETDGLDTLTANLIGLSFAIEPGVAAYLPVAHDYLDAPVQLDRAYVLETL 409 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ +FD L + + +R + + T + S + + + +H + Sbjct: 410 KPLLEDEKALKVGQNLKFD-KSLLARYDIDLRGIAYDTMLESYVLDSVSGRHDMDSLSDR 468 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ YAA D L L KL+ G+ Sbjct: 469 YLDHKTITFEEIAGKGKNQLTFNQIALEQAAPYAAEDADVTLQLHLAMWPKLKESTGQLK 528 Query: 179 LATS-CCNFLMDRAELDLLG 197 + L + ++ G Sbjct: 529 VFNEIEMPLLPVLSHIERTG 548 >gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1] gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1] Length = 994 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 577 RLAAEGLMSVYE 588 >gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33] gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33] gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] Length = 994 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 577 RLAAEGLMSVYE 588 >gi|170050482|ref|XP_001861331.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872069|gb|EDS35452.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 708 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79 I+ D E + L R ++ ++QL G I +A P+ + +L EK K+ Sbjct: 606 VISFDCEGINLGV-RGQITMIQLGTTRGEAFIFDVATCPDMVPHGGIKQVLEAEKVIKVI 664 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTK 104 H R D L+ F + +R VF T+ Sbjct: 665 HDCRNDSVNLYNQFQIMLRNVFDTQ 689 >gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94] gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1] gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94] gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1] Length = 994 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 577 RLAAEGLMSVYE 588 >gi|212636762|ref|YP_002313287.1| 3'-5' exonuclease [Shewanella piezotolerans WP3] gi|212558246|gb|ACJ30700.1| 3'-5' exonuclease [Shewanella piezotolerans WP3] Length = 294 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 64/189 (33%), Gaps = 28/189 (14%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGL----MPRRDRLCIVQLSPGDGTVDIIRIAA 58 +I + A I DTET + + ++Q++ Sbjct: 95 SIVTSDTLAAAITDINAQQWIGFDTETAATFEKGRRNSNPVSLIQIATASHCYL---FRM 151 Query: 59 GQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-----TKIASR 108 +N L + K+ R D+ + F + + P+ ++ + Sbjct: 152 VGRNVSIFKAALAEVLSEQSNILKLGIGLRSDVNAMKRDFNIVLSPMLDLNWLMNQLGAA 211 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSAD---DLSDEQLQYAASDVVHLHAL 163 Q G +L + + K+++ S+W+ LS+EQ+ YAA+D + + Sbjct: 212 ------KQMGTVQIAASVLSLKLPKSKRVTLSNWALPLDMPLSNEQVLYAATDALVALDI 265 Query: 164 RLQFTEKLQ 172 +L+ Sbjct: 266 YHGLFAQLE 274 >gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M] gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] Length = 994 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 577 RLAAEGLMSVYE 588 >gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] Length = 933 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L P + L + ++ G + AP L Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPAQLERRQALAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 411 APLLTDPAVRKLGQHGKYDLHVMRRHGIALAGYSDDTLLQSFVLNSGSARHDMDSLAKRY 470 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + A + Q+ +YAA D L KL Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLAAE 524 >gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14] gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14] Length = 949 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 22/170 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET G P L + S + + + ++ A + +E Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPVPDNREEALKIVNEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL GV+V+ +F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLENY-GVQVKGALFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHI 493 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL + + +YA D L+ ++L+ Sbjct: 494 DELIGPKGKNQK----NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKE 539 >gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046] gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046] Length = 921 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 18/170 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGML 70 A DTET L R ++ ++ + +A +NAP + +L Sbjct: 347 KRFAFDTETTSLDYRVAQIVGFSVAFDAQDAYYVPLAHDYENAPAQLDREQILAQIKPIL 406 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGI 129 DE +KI H+ ++D VL G+ ++ F T +AS + +HG+ D + L Sbjct: 407 EDESVQKIGHHLKYDAHVLENH-GIELKGWYFDTMLASYVLNAVATRHGMDDVSRLYLSH 465 Query: 130 NISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 + +Q + A + Q++ YAA D + L KLQ+ Sbjct: 466 LTTTFEQVAGKGAKQKTFNQIEIETAAHYAAEDAHVTYRLFEVLDAKLQK 515 >gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513] gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 994 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 577 RLAAEGLMSVYE 588 >gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6] gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6] Length = 949 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 22/170 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET G P L + S + + + ++ A + +E Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPVPDNREEALKIVNEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL GV+V+ +F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLENY-GVQVKGALFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHI 493 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL + + +YA D L+ ++L+ Sbjct: 494 DELIGPKGKNQK----NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKE 539 >gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] Length = 994 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 577 RLAAEGLMSVYE 588 >gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227] Length = 928 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + +I A+ A DTET L L + + G I +A Sbjct: 331 VTILDEEILKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 510 LKMWPDLQK 518 >gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] Length = 897 Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 64/196 (32%), Gaps = 37/196 (18%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T + D+ AE D+ DTET L L + +G I + Sbjct: 304 TTQTQLDDLIAEL--EKYDSFVFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P L + D K+ K+ H +FD VL V T I + + ++ Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421 Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157 +H + KE LGI K QQ+ D Q+ YAA D Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471 Query: 158 VHLHALRLQFTEKLQR 173 L F L++ Sbjct: 472 DITFRLFNHFKALLEQ 487 >gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] Length = 949 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 22/170 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET G P L + S + + + ++ A + +E Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPVPDNREEALKIVNEFRPVFENENS 435 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131 K+ ++D+ VL GV+V+ +F T IA + + +HG+ + L I+I Sbjct: 436 LKVGQNIKYDMIVLENY-GVQVKGALFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHI 493 Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173 K Q+ + DL + + +YA D L+ ++L+ Sbjct: 494 DELIGPKGKNQK----NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKE 539 >gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2] gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2] Length = 940 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 22/176 (12%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLV 67 + +D +A DTET L R+ V S D + +A AP +L Sbjct: 360 KKMDWVAFDTETDSLDLFAGRIVGVSFSIEDNRAAYVPLAHNYPGAPAQLDRDTVLADLK 419 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 L D R K+ +FD +L +F T + S + + +H + + L Sbjct: 420 PWLEDASRTKVMQNAKFDSHMLANHGITLRGVLFDTMLESYVLDSTATRHDMDSLAAKYL 479 Query: 128 GINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 G + D A LS ++ YAA D L+ KL Sbjct: 480 GRS---TITFEDIAGKGAKALSFPEIHLEQAGPYAAEDADVTGQLQQCLWPKLSVE 532 >gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + + E A+ A DTET L L + + G I +A Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 510 LKMWPDLQK 518 >gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101] gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + + E A+ A DTET L L + + G I +A Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 510 LKMWPDLQK 518 >gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75] gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5' exonuclease [Escherichia coli O127:H6 str. E2348/69] gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + + E A+ A DTET L L + + G I +A Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 510 LKMWPDLQK 518 >gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330] gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365] gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40] gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330] gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365] gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40] Length = 979 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 386 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 444 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 445 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 503 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 504 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 561 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 562 RLAAEGLMSVYE 573 >gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200] Length = 897 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 T + D+ AE D+ A DTET L L + +G I + Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNAYEANLVGLSFCAKEGRAFYIPLQHRYLG 361 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P L + D K+ K+ H +FD VL V T I + + ++ Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421 Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157 +H + KE LGI K QQ+ D Q+ YAA D Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471 Query: 158 VHLHALRLQFTEKLQR 173 L F L++ Sbjct: 472 DITFRLFNHFKALLEQ 487 >gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2] gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2] Length = 978 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 ATETGVLAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 929 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 18/173 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP Sbjct: 347 LKLAEVFAFDTETDGLDTLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVLALF 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK KI +FD V+ + +R + F T + S + + +H + + Sbjct: 407 KPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L ++ + + L+ Q+ YAA D L + KLQ Sbjct: 466 YLSHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHLHQKLWGKLQ 518 >gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39] gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI39] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + + E A+ A DTET L L + + G I +A Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 510 LKMWPDLQK 518 >gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043] gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043] Length = 929 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 18/173 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP Sbjct: 347 LKQAEVFAFDTETDGLDTLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAQVLALF 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK KI +FD V+ + +R + F T + S + + +H + + Sbjct: 407 KPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L ++ + + L+ Q+ YAA D L KLQ Sbjct: 466 YLKHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHLHQTLWGKLQ 518 >gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024] Length = 881 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445] gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445] Length = 978 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGILAFDTETTSLDPMQGELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|325269880|ref|ZP_08136490.1| hypothetical protein HMPREF9141_1700 [Prevotella multiformis DSM 16608] gi|324987853|gb|EGC19826.1| hypothetical protein HMPREF9141_1700 [Prevotella multiformis DSM 16608] Length = 224 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 11/163 (6%) Query: 21 DAIAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 D I +DTET R ++ ++Q + G + + L D Sbjct: 46 DIIGIDTET--RPTFRKGQHHKVALLQACDKEVCFLFRLNLLGMPDC--IKRFLEDTTVP 101 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ D+ +L + + + L+ + I+K +Q Sbjct: 102 KVGLSLGDDMLMLHQRSAFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFHERITKREQ 159 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 S+W LSD+Q YA++D L + E L+ G +L Sbjct: 160 LSNWENQILSDKQKLYASTDAWTCINLYERLHE-LKHTGDYEL 201 >gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026] gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026] Length = 978 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] Length = 935 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 30/184 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET G+ ++ +L + + I + P L Sbjct: 344 LKNAKLFAFDTETTGIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRAL 403 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTRTYTNQHG 118 +L D + K+ + +FD+ +L G+ VR + F T + S + + +H Sbjct: 404 KPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHD 463 Query: 119 LKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 + ++ L D A L+ +Q+ YAA D L + Sbjct: 464 MDSLAQKYLDHT---TVSFQDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQTLFD 520 Query: 170 KLQR 173 KL Sbjct: 521 KLSA 524 >gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536] gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11] gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536] gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11] gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2] gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + + E A+ A DTET L L + + G I +A Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 510 LKMWPDLQK 518 >gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + + E A+ A DTET L L + + G I +A Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 510 LKMWPDLQK 518 >gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89] gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1] gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88] gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89] gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1] gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli S88] gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034] gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146] gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3] gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + + E A+ A DTET L L + + G I +A Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 510 LKMWPDLQK 518 >gi|17557121|ref|NP_499104.1| hypothetical protein ZK1098.3 [Caenorhabditis elegans] gi|732219|sp|P34603|YO63_CAEEL RecName: Full=Uncharacterized protein ZK1098.3 gi|3881492|emb|CAA80141.1| C. elegans protein ZK1098.3, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 784 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 30/179 (16%) Query: 22 AIAVDTETLGLMPR------RDRLCIVQLSPGD-----GTVDIIRIAAGQKNAPNLVG-M 69 I D+E P RL I+QL D V I +A+ L + Sbjct: 446 YIGYDSEF---KPYHLIDVSTSRLAIIQLFFKDKAWLINCVAIDNLASRDDVWIRLYKGL 502 Query: 70 LVDEKREKIFHYGRFDIAVLF------YTFGVR-VRPVFCTK--------IASRLTRTYT 114 K + R DI +F F + ++ V C K ++ + T Sbjct: 503 FESNKFSIVGFDIRQDIEAMFTVPSINKNFKIENIQNVICVKSLAENVNALSMDILNLST 562 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L L+G+ + K++Q +W L Q+ YA D V + + + E +++ Sbjct: 563 KTSKLSVLADHLVGLKMDKSEQCGNWQCRPLRRNQIIYAVMDAVAVFEVFQKIVEVVRK 621 >gi|46124885|ref|XP_386996.1| hypothetical protein FG06820.1 [Gibberella zeae PH-1] Length = 547 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 21/168 (12%) Query: 21 DAIAVDTETLGLMPRR---DRL--CIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDE 73 I D E L+ R R+ ++Q++ + AP ++ DE Sbjct: 186 KVIGFDLE--WLIRHRNTDPRVNVSLIQIASPSRVALFHVALYPKDDFVAPTFKKIMEDE 243 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---------QHGLKDNLK 124 K+ + D L G+ R V +L + + L + Sbjct: 244 SVTKVGVCIKGDCTRLKNNLGIESRGVLELSHLFKLVKYSKSGELKRINKIMVNLAAQTQ 303 Query: 125 ELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 E+LG+ + K +SS+W LS++Q+ Y+ASD L ++ Sbjct: 304 EVLGLPLFKGNDVRSSNWML-PLSEQQISYSASDAYVGLQLYHVLEQE 350 >gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDANVTLQLHLKMWPDLQK 518 >gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1] gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1] Length = 978 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50] Length = 665 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] Length = 978 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33] gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915] gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99] gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99] gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915] gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99] Length = 978 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400] Length = 891 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 44/135 (32%), Gaps = 11/135 (8%) Query: 8 EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN- 65 E D A A +VD ET L P + + LS D I + AP Sbjct: 298 EADFRALLADLAGAGVFSVDLETTSLNPLEADIVGISLSFRDHEACYIPVGHAYDGAPAQ 357 Query: 66 ---------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 L +L D K+ ++D VL V T +AS L + Sbjct: 358 LDRTLVLEGLRPLLTDPAVRKVGQNLKYDYQVLRRHGIVMAGVWCDTMVASYLINPVRSG 417 Query: 117 HGLKDNLKELLGINI 131 HGL E L + Sbjct: 418 HGLDSLAVEHLDHRM 432 >gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206] gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3] gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + + E A+ A DTET L L + + G I +A Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 510 LKMWPDLQK 518 >gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1] gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94] Length = 978 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a] gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli ED1a] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + + E A+ A DTET L L + + G I +A Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 510 LKMWPDLQK 518 >gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 978 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308] gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19] gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA polymerase, family A:5'-3' exonuclease:3'-5' exonuclease:Hel [Brucella melitensis biovar Abortus 2308] gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19] gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] Length = 978 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|308172795|ref|YP_003919500.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus amyloliquefaciens DSM 7] gi|307605659|emb|CBI42030.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus amyloliquefaciens DSM 7] Length = 761 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 59/184 (32%), Gaps = 25/184 (13%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRD-RLCI-VQLSPGDGTVDIIRIAAGQ- 60 I E A + IAVDTET G+ D + + + L D V I + Sbjct: 121 ITTEERFQALIDALNNEEIIAVDTETTGVDVYTDVIVGLSLTLPNADWHVYI-PVEHVDC 179 Query: 61 ------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR-- 111 L + DE K+ H FDIA+L G ++ V + T A L Sbjct: 180 EQLSRAYVLEGLAPVFNDESIGKVLHNAIFDIAMLRRH-GFDLKGVAWDTMTAMHLLNEN 238 Query: 112 ------TYTNQHGLKDNLKELLGINISKAQ----QSSDWSADDLSDEQLQYAASDVVHLH 161 LKD + L +++ + L L YAA D Sbjct: 239 ESDRALGGAGSFKLKDLAPKYLKTPADTFDALFGRNAQFKEVPLDIA-LVYAAKDTELTW 297 Query: 162 ALRL 165 L Sbjct: 298 KLYE 301 >gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9] gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9] Length = 937 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 24/176 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 D +A DTET L L V + +G + +A +AP L Sbjct: 354 LTAADVVAFDTETDSLDYMTANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVLAQL 413 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + K+ +FD+++L + ++ + + T + S + + +H + Sbjct: 414 KPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKYDTMLESYVFNSVVGRHDMDSLALR 472 Query: 126 LL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L I+ + L+ Q+ YAA D L EK++ Sbjct: 473 YLEHKNISFEEVAGK---GKKQLTFNQIDLDVAGPYAAEDADITLRLHNLLNEKVE 525 >gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] Length = 918 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 18/172 (10%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 + IA+DTET L L + + G + +A +AP L + Sbjct: 338 AELIAIDTETTSLNYMEAELVGLSFATEAGKAAYLPLAHDYLDAPLQIDKASALEKLRPI 397 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + +K+ ++D+++L G+ ++ + F T + S + + ++H + + LG Sbjct: 398 LEGDTPQKVGQNLKYDMSILANA-GISLKGIRFDTMLESYVFNSIASRHDMDGLALKYLG 456 Query: 129 INISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 ++ + A L+ Q+ YAA D L +L++ Sbjct: 457 HKNISFEEVAGKGAKQLTFNQVHLDIAGPYAAEDADITLRLHQHLWPRLEKE 508 >gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469] gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia fergusonii ATCC 35469] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10] gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 60/184 (32%), Gaps = 33/184 (17%) Query: 20 VDAIAVDTET------------LGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAP- 64 IAVDTET + L R C + L+ GT D+ A + P Sbjct: 336 AGQIAVDTETDALSSTASGLVGISLATAPGRACYIPLAHVDPQGTGDMFDTGAAPEQIPM 395 Query: 65 -----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 L +L D KI ++D+ VL G+ V P T + S + + HG+ Sbjct: 396 DQALKVLKPLLEDPAVLKIGQNFKYDLGVLSRY-GIDVAPYDDTMLISYVMEAGLHGHGM 454 Query: 120 KDNLKELLGIN---------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + LG K Q + D L L YAA D L Sbjct: 455 DALAELHLGHTCIPFKEICGTGKNQITFD--KVPLDKATL-YAAEDADITLRLWEILKPA 511 Query: 171 LQRL 174 L Sbjct: 512 LVAK 515 >gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605] gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86] gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W] gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W] gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W] gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQITLEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972] gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972] gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972] gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012] gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046] gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K-12 substr. W3110] gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A] gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638] gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A] gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22] gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019] gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171] gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1] gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11] gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1] gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989] gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952] gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606] gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9] gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B] gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088] gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736] gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli] gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli] gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046] gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K12 substr. W3110] gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A] gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638] gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A] gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22] gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019] gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171] gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1] gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11] gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli 55989] gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI1] gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952] gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Escherichia coli BL21(DE3)] gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606] gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)] gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1] gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088] gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1] gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112] gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010] gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68] gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1] gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482] gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489] gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007] gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3] gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143] gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933] gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000] gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966] gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933] gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli] gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli] gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli] gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli] gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli] gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407] gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212] gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89] gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905] gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61] gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520] gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044] gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125] gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70] gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354] gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946] gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946] Length = 929 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 24/178 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 ++ + A D ET L + + + G + +A +AP L Sbjct: 346 LQHSELFAFDLETDSLDTLSANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDVLARL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L D + +K+ +FD VL G+R F T + S + +H + Sbjct: 406 KPLLEDPQSQKVGQNLKFDRGVLKRYDIELLGIR----FDTMLESYALNSVAGRHDMDTL 461 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 L ++ + + L+ Q+ YAA D L L+ +L++ Sbjct: 462 ASRWLQHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKE 519 >gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82] gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|170095531|ref|XP_001878986.1| predicted protein [Laccaria bicolor S238N-H82] gi|164646290|gb|EDR10536.1| predicted protein [Laccaria bicolor S238N-H82] Length = 250 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 31/188 (16%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPN---- 65 +P C R + +AVD E + L ++ +VQ+ S V ++ + A + Sbjct: 24 LPDACNPRAM-TLAVDLEGIDLCRH-GKISLVQIMSSVSEVVWLVDVTTLGSQAFDHVDP 81 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---- 117 L +L D +K+F+ R D L+ +GV + V+ ++ R + Sbjct: 82 YGRTLRMILEDTGIKKVFYDVRNDADALYNLYGVNLMGVYDLQLLELAVRHSLRRQTRLL 141 Query: 118 -GLKDNLKELL------------GINISKAQ---QSSDWSADDLSDEQLQYAASDVVHLH 161 GL ++K L G + K + S + L + Y A DV L Sbjct: 142 NGLSKSIKSYLTPPVEWEPVKEAGSRLFKPEFGGSYSVFEERPLDPRIVAYCAQDVTLLF 201 Query: 162 ALRLQFTE 169 AL Sbjct: 202 ALEETLRR 209 >gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401] gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease [Shigella flexneri 2002017] gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671] gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71] gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|27370298|ref|NP_766445.1| exonuclease 3'-5' domain-containing protein 1 [Mus musculus] gi|81914299|sp|Q8CDF7|EXD1_MOUSE RecName: Full=Exonuclease 3'-5' domain-containing protein 1; AltName: Full=Exonuclease 3'-5' domain-like-containing protein 1 gi|26326111|dbj|BAC26799.1| unnamed protein product [Mus musculus] gi|111598629|gb|AAH92241.1| Exonuclease 3'-5' domain-like 1 [Mus musculus] gi|123232373|emb|CAM22019.1| Vexonuclease 3'-5' domain-like 1 [Mus musculus] gi|123858356|emb|CAM18069.1| Vexonuclease 3'-5' domain-like 1 [Mus musculus] Length = 570 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 172 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 229 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQSSD-- 139 + + VF T++A S T + L+++L L + + + Q+ Sbjct: 230 IMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVAPRYLFFLEERQKRIQEN 289 Query: 140 ---WSADDLSDEQLQYAASDVVH 159 W L L+ A + + Sbjct: 290 PEIWLTRPLPPSLLKILALETTY 312 >gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS] gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|148696007|gb|EDL27954.1| Vexonuclease 3'-5' domain-like 1 [Mus musculus] gi|187957716|gb|AAI50663.1| Exonuclease 3'-5' domain-like 1 [Mus musculus] gi|219519197|gb|AAI44751.1| Exdl1 protein [Mus musculus] Length = 570 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 172 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 229 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQSSD-- 139 + + VF T++A S T + L+++L L + + + Q+ Sbjct: 230 IMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVAPRYLFFLEERQKRIQEN 289 Query: 140 ---WSADDLSDEQLQYAASDVVH 159 W L L+ A + + Sbjct: 290 PEIWLTRPLPPSLLKILALETTY 312 >gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] Length = 924 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 77/209 (36%), Gaps = 30/209 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------- 65 A++ IAVD ET L RL V L+ I + + + Sbjct: 333 AKHARVIAVDVETDALSAVASRLVGVSLATAPNEACYIPLGHEGGDLADGGMKPDQIDES 392 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L +L ++ K+ ++D+AV GVRV P T + S + + HG+ Sbjct: 393 EALGRLKAILENDAILKVGQNFKYDLAVFQRY-GVRVAPYDDTMLISYVQAAGLHNHGMD 451 Query: 121 DNLKELLGIN-IS--------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + LG IS K+Q+ +S DL +YAA D L L Sbjct: 452 ELAERHLGHTCISFKEVCGTGKSQKR--FSEIDLKTA-TEYAAEDADITLRLWELLKAGL 508 Query: 172 QRLGRSDLATSCCNFLMD-RAELDLLGWE 199 G S + + L +++L G + Sbjct: 509 AGKGLSTVYETLERPLPQVLTDMELAGVK 537 >gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687] Length = 928 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605] gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605] Length = 986 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 58/175 (33%), Gaps = 26/175 (14%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------------LV 67 +A DTET L P R L + + G+ + I G K + + L Sbjct: 391 PVAFDTETTDLNPFRAELVGIGICWGEDLDALAYIPLGHKGSEDSIPEQLSLETVLTALA 450 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 L K ++D +L V T +A R + +HGL+ + Sbjct: 451 PWLASSNHPKTLQNAKYDRLILLRHGIALEGVVIDTLLA-DYLRDASAKHGLELMAEREF 509 Query: 128 GIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 G + K Q +D L L Y DV L L +L+ +G Sbjct: 510 GFQPTSFTDLVGKKQTFAD---VPLEPASL-YCGMDVHVTRRLALLLRHQLETMG 560 >gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8] gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8] Length = 908 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 19/201 (9%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + + D+ + D A DTET L + V + G + + Sbjct: 311 VITEQADLDQWLKKLKDSDLFAFDTETTSLRYMDAEIVGVSFAVEPGKAAYVPLGHDYMG 370 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111 AP L +L D K +K+ ++D VL +++ + T + S + Sbjct: 371 APEQLDRDSVLEQLKPLLEDPKHKKVGQNLKYDKNVLANH-DIQLEGIAEDTMVESYVLN 429 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165 + +H + + L + + A L+ Q+ YAA D L Sbjct: 430 SVGTRHDMDSLARTYLDEETITYESIAGKGAKQLTFNQIDLESAGPYAAEDADITLRLHQ 489 Query: 166 QFTEKLQRLGRSDLATSCCNF 186 +L+ G+ + + Sbjct: 490 TLAPRLKDTGKLESVYREIDL 510 >gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101] Length = 916 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 334 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 393 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 394 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 452 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 453 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 506 >gi|298713371|emb|CBJ33586.1| conserved unknown protein [Ectocarpus siliculosus] Length = 818 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 19/169 (11%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTE----TLG--LMPRRDRLCIVQLSPGDGTVDIIR 55 T I + ++ CA + + + +D E G P +C +QL+ DGT + Sbjct: 167 TAIDIAVANLVGGCATQGM-VLGMDCEWEPAFNGSSERP----VCTLQLALPDGTSSLFH 221 Query: 56 IAAG------QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 + G NL +L D K+ + D L + V R + + +R Sbjct: 222 LQRGGRGITPSTFNTNLKRLLGDLAITKVGVAVKGDGKRLQRDYDVETRGMVDLRSYARA 281 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASD 156 L LG +SK + S WS +L+ Q++YA D Sbjct: 282 CWVDLPCRSLAGMTATALGKYLSKDAAGRFSHWSRPELTPNQIEYACLD 330 >gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299] gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299] Length = 928 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] Length = 934 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 22/196 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVD 72 A DTET L + RL + + G + + +AP + +L + Sbjct: 356 FAFDTETDSLDTQEARLVGMSFAIEAGRAAYLPVGHDYLDAPAQLSLDEVIAVMKPILEN 415 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNLKELLGI 129 EK KI ++D VL + ++ + F T + S + +H + L Sbjct: 416 EKIGKIGQNLKYDAEVLLNY-DIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRHLNH 474 Query: 130 NISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 ++ + L+ Q+ YAA D L +L+ + Sbjct: 475 KTVSFEEIAGKGKKQLTFNQIPLEQAANYAAEDADVTLLLHQALYPQLESEPKLAHVFQN 534 Query: 183 -CCNFLMDRAELDLLG 197 + ++ G Sbjct: 535 IEMPLVPVLVRMERKG 550 >gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396] gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396] Length = 911 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 18/180 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65 A + DTET L + V + G + +A AP Sbjct: 327 ALTDAKTFSFDTETTSLNYMEAEIVGVSFAVEPGKAAYVPVAHDYMGAPEQLERDKVLAA 386 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLK 124 L +L D KI ++D VL GV++ + T + S + + N+H + Sbjct: 387 LKPLLEDPAYRKIGQNLKYDAHVLANH-GVQLNGIAEDTMLESYVLNSTANRHDMDTLAS 445 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSD 178 + LG + + A L+ Q+ YAA D L KL++ GR + Sbjct: 446 KHLGRETIHFEDIAGKGAKQLTFNQISLEQAGPYAAEDADITLQLHHALNPKLKKEGRLE 505 >gi|71004700|ref|XP_757016.1| hypothetical protein UM00869.1 [Ustilago maydis 521] gi|46096710|gb|EAK81943.1| hypothetical protein UM00869.1 [Ustilago maydis 521] Length = 646 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 12/148 (8%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +D E R +VQ+ + I A + P L +L D K Sbjct: 210 GPGPMGLDLEWNYSRAGVHRTALVQICSSSLILIIHTSAMSHRIPPLLKHILQDPSIVKT 269 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--------TYTNQHGLKDNLKELLGIN 130 + D L + + R V S + +++ L+D + LG Sbjct: 270 GVAIKNDALKLQRDYAIDARNVVE---LSNFVKLAQPHRWAGHSHLISLRDLTRIYLGRK 326 Query: 131 ISKAQ-QSSDWSADDLSDEQLQYAASDV 157 + K + SDW L +Q++YAASD Sbjct: 327 LRKDSVRVSDWERYPLDAKQIEYAASDT 354 >gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] Length = 959 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 72/213 (33%), Gaps = 27/213 (12%) Query: 3 TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TI + ++ A DTET G DR+ + L+ I Sbjct: 369 TIVRNAQELEAVLREVAACPEFCFDTETTGFDIFNDRIVGLSLAVRPYEAWYIPFNESNT 428 Query: 62 N--APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHG 118 A + + D K KI +FD+ VL GV +R ++ T I L + +H Sbjct: 429 AEYAALIRPLFADGKIAKIGQNIKFDLMVLAR-LGVEIRGRLYDTMILHYLLDPES-RHN 486 Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + L I K A L+ + + +YAA D L+ Sbjct: 487 MDALAMRYLNYRPISITSLIGK-------GARQLTMDMISLERVAEYAAEDADVTLRLKQ 539 Query: 166 QFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 K++ L + L + AE+++ G Sbjct: 540 VLWPKVEELDLAGLYLEIEEPMIAVLAEIEMAG 572 >gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126] gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126] Length = 936 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 24/214 (11%) Query: 2 TTIRVHEGDIPAE-----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 T + H D P D DTET L P L + S G + Sbjct: 339 TKHQYHLIDTPELREDLITYLSIQDEFCFDTETTDLEPTDAELVGLAFSYVAGEAYYVPF 398 Query: 57 AAGQKNA----PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTR 111 A QK A +L +E KI ++DI V+ GVRV+ +F T +A L Sbjct: 399 PADQKEAQKIADEFKEVLENEDITKIGQNLKYDIQVMRNY-GVRVQGKMFDTMLAHYLLD 457 Query: 112 TYTNQHGLKDNLKELLG---INI-----SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 T +H + + L ++I K + + + ++ ++YA D L Sbjct: 458 PET-RHNMDVMAENYLNYSPVSITDLIGKKGVKQGNMRDVPV-EDVVEYAGEDADITLQL 515 Query: 164 RLQFTEKLQRLGRSDL---ATSCCNFLMDRAELD 194 + ++++ L ++++ E + Sbjct: 516 KHILEKEIKENNLESLLHDVEEPLSYVLAEMEYE 549 >gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158] Length = 891 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 24/178 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 ++ + A D ET L + + + G + +A +AP L Sbjct: 308 LQHSELFAFDLETDSLDTLSANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDVLARL 367 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 +L D + +K+ +FD VL G+R F T + S + +H + Sbjct: 368 KPLLEDPQSQKVGQNLKFDRGVLKRYDIELLGIR----FDTMLESYALNSVAGRHDMDTL 423 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 L ++ + + L+ Q+ YAA D L L+ +L++ Sbjct: 424 ASRWLQHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKE 481 >gi|167625422|ref|YP_001675716.1| 3'-5' exonuclease [Shewanella halifaxensis HAW-EB4] gi|167355444|gb|ABZ78057.1| 3'-5' exonuclease [Shewanella halifaxensis HAW-EB4] Length = 297 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 25/177 (14%) Query: 13 AECAARYVDAIAVDTETLGL----MPRRDRLCIVQLSPGDGTVDI-IRIAAGQKNAPNLV 67 A I DTET + + ++Q++ ++ + L Sbjct: 105 AIADIEAQSWIGFDTETAATFEKGRRNTNPISLIQIATATHCYLFRMQAINIEPFKVALT 164 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL-------TRTYTNQHGLK 120 ++ +E KI R DI + F IA+ L Q G + Sbjct: 165 PVMSNEHLLKIGIGLRSDINGMKRD--------FDMSIAAMLDLNWLMNQLGAPKQLGTQ 216 Query: 121 DNLKELLGINISKAQ--QSSDWSA---DDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 +L + + K++ S+WS + LS+ QLQYAA+D + T ++ Sbjct: 217 QAAATVLALKLPKSKKVTLSNWSKPLTEPLSELQLQYAAADTFVALDILHAVTAQVA 273 >gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 696 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 103 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 161 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 162 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 220 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 221 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 278 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 279 RLAAEGLMSVYE 290 >gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327] Length = 884 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + + E A+ A DTET L L + + G I +A Sbjct: 287 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 346 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 347 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 405 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 406 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 465 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 466 LKMWPDLQK 474 >gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 688 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 95 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 153 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 154 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 212 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 213 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 270 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 271 RLAAEGLMSVYE 282 >gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4] gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4] Length = 793 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 61/211 (28%), Gaps = 35/211 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---------------- 60 A V +A DTET L + L + LS G I +A Sbjct: 199 AYEVGYVAFDTETTSLNAMQAELVGISLSTSTGKACYIPLAHIDGEGDLLGGGALIEGQI 258 Query: 61 ---KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L ML D KI ++D V+ + GV V T + S + Sbjct: 259 PLKDALAILKPMLEDPAVLKIAQNLKYDWLVMTHY-GVNVTSYDDTMLLSYTVDAGKGGN 317 Query: 118 GLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 G+ + + LG K+ + D L YAA D L Sbjct: 318 GMDELSERWLGHKPIPFKEVCGSGKSMITFD--KVPLDKA-TAYAAEDADVTLRLWQVLK 374 Query: 169 EKLQRLGRSDLATSCCN--FLMDRAELDLLG 197 +L R + A ++ G Sbjct: 375 PRL-ASDRMATVYETLERPMVPVLARMEQRG 404 >gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38] gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38] Length = 950 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 28/211 (13%) Query: 8 EGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 +GD+P + + + ++ DTET G+ L + S G + Q+ A Sbjct: 360 QGDLPVKLLMQNLLNQTSVCFDTETTGIDALNAELVGMSFSFEKGKGFYVPFPEDQEEAQ 419 Query: 65 NLVG----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L+ +E EKI ++D+ +L +F T IA L +H + Sbjct: 420 TLIEKFRPFFENENIEKIGQNMKYDLKILSNYNMQVKGKLFDTMIAHYLINP-DMRHNMD 478 Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQF 167 + L I K + LS ++ +YA D L+ F Sbjct: 479 VLSETYLKYAPKSIETLIGKK------GKNQLSMRDVPLEDIKEYATEDADITFQLKEHF 532 Query: 168 TEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L+++G L + A+++ G Sbjct: 533 QPILEKVGTKKLFDEIEIPLVPVLADMEKEG 563 >gi|195626632|gb|ACG35146.1| Werner syndrome ATP-dependent helicase [Zea mays] Length = 303 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 8/153 (5%) Query: 22 AIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 ++ D E PRR ++ ++QL ++ IA P L +L D K Sbjct: 138 SLGFDLE-WRPFPRRGEPPCKVAVMQLCMEKTLCYVLHIAHSGV-PPILKTLLEDSSSIK 195 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135 + D +F + V V+P+ + + + L + + + K Sbjct: 196 VGICIDNDARKMFNDYDVCVQPLMDLSTLANVKLASPKRWSLASLTEMITCKELPKPSNI 255 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + +W AD LS +QLQYAA+D L Sbjct: 256 RMGNWEADVLSKQQLQYAATDAYISWYLYEALQ 288 >gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] Length = 923 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 18/172 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ + +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAQDAYYVPLAHTYENAPQQLNREQILAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F T +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDTMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVATHYAAEDAHVTYRLYEVLSNKLK 516 >gi|212721724|ref|NP_001131769.1| hypothetical protein LOC100193139 [Zea mays] gi|194692488|gb|ACF80328.1| unknown [Zea mays] Length = 303 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 8/153 (5%) Query: 22 AIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 ++ D E PRR ++ ++QL ++ IA P L +L D K Sbjct: 138 SLGFDLE-WRPFPRRGEPPCKVAVMQLCMEKTLCYVLHIAHSGV-PPILKTLLEDSSSIK 195 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135 + D + + V V+P+ + + + L + + + K Sbjct: 196 VGICIDNDARKMLNDYNVCVQPLMDLSTLANVKLASPKRWSLASLTEMITCKELPKPSNI 255 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + +W AD LS +QLQYAA+D L Sbjct: 256 RMGNWEADVLSKQQLQYAATDAYISWYLYEALQ 288 >gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi] gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi] Length = 909 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 69/194 (35%), Gaps = 17/194 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------AGQKNAPNLVGM 69 + + I++DTET L +L + +S + I I + Sbjct: 337 LKQANYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIETKGKIYIEKHYIIQKFNNL 396 Query: 70 L-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + K I +FD +L + P F T IA+ L T + + L ++ L Sbjct: 397 FKSNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYLM 453 Query: 129 INISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183 K + Q +D + ++S E Y+ D L FTEKL+ +L Sbjct: 454 HKNIKYEDVIQKND-NFANISLEMATSYSCEDADITFRLFNIFTEKLKEDELYELMHEIE 512 Query: 184 CNFLMDRAELDLLG 197 F E++ G Sbjct: 513 MPFNNVIIEMEENG 526 >gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3] gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3] Length = 930 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 68/187 (36%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 347 LKASELFAFDTETDSLDYMVANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQL 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +VL G+ ++ + T +AS + + +H + Sbjct: 407 KPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q++ YAA D L + +++ + Sbjct: 466 FLQHSCISFEQIAGKGKNQLTFNQIELDEASPYAAEDADVTLRLHNRLFANIEQDEKLKT 525 Query: 180 ATSCCNF 186 Sbjct: 526 VYEEIEM 532 >gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] Length = 949 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 35/191 (18%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----AGQKNA---------- 63 R +AVDTET GL + L + L+ G I +A AG + Sbjct: 351 RERGWVAVDTETTGLDEMKADLVGISLAVEPGAACYIPLAHKAEAGSDDLFGSDTLAEGQ 410 Query: 64 -------PNLVGMLVDEKREKIFHYGRFDIAVLFYTF------GVRVRPVFCTKIASRLT 110 L +L D KI ++D + G+ V P T + S Sbjct: 411 MDFATALSMLKPVLEDPAILKIGQNMKYDAKIFRRQHGAGFEDGITVAPYDDTMLLSYAL 470 Query: 111 RTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + HG+ + L + + + + + ++D + YAA D L Sbjct: 471 FAGQHGHGMDTLSERYLSHSPIPIKSLLGTGKSAITFDRVPIADA-VAYAAEDADITLRL 529 Query: 164 RLQFTEKLQRL 174 F +L + Sbjct: 530 WKLFKPQLHQQ 540 >gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36] gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36] Length = 931 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + + A DTET L + L + + +G + +A +AP +L Sbjct: 348 LQKAELFAFDTETTSLNYIQAELVGLSFAVAEGEAAYLPVAHDYIDAPEQLDRDHVLASL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D +K+ ++D +VL G+ + + + T I S + + +H + + Sbjct: 408 KTLLEDSNAKKVGQNLKYDKSVLANY-GINLAGIAYDTMIESYVYNSIATRHDMDSLADK 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 LG ++ + L+ Q++ YAA D L K++ Sbjct: 467 YLGHKTISFEEIAGKGKKQLTFNQIELEQASAYAAEDADVTLRLHNVLWPKIEAE 521 >gi|115644574|ref|XP_798576.2| PREDICTED: similar to conserved hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 288 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 22/161 (13%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--- 65 + + + +D E ++ ++ + Q++ + + A + Sbjct: 130 DDWVEKPNAVVGIDMEWKPPFNR--TQKVKVAVCQIATHEKVYLLDMRALWVPETKDIVK 187 Query: 66 --LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCT-----KIASRLTRT 112 +L E K+ D +L +F + +I ++ Sbjct: 188 TFFQRLLQSEDILKLGFGISGDYKMLSQSFLEVQEALKGEKRTVDINGLSKRILQMISAP 247 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 + GL D + G N+ K + SDW LS Q+ YA Sbjct: 248 VNSSFGLTDLVHFCFGKNLDKRDRMSDWEKRPLSQAQMTYA 288 >gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905] Length = 884 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 302 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 361 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 362 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 420 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 421 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 474 >gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307] gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307] Length = 986 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 24/174 (13%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----------PNLVGM 69 A+A+DTET L P R +L + G+ D+ I G A L Sbjct: 393 APAVAIDTETTDLNPFRAQLVGLGFCWGEADNDLAYIPIGHSGAEGQLPLAEVLEALAPW 452 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + K ++D VL G+ + V T +A R + +H L++ + G Sbjct: 453 LASPTQRKCLQNAKYDRLVLLRH-GLELNGVAVDTLLA-DYLRDASARHNLEELAQRHYG 510 Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + K Q +D + + QY DV + L + ++L++LG Sbjct: 511 FRPTSFSDLVGKGQTFAD---VPI-EAAAQYCGMDVHLTYRLAIDLVQQLEQLG 560 >gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] Length = 924 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D I+ DTET L R RL + L+ G I + AP L Sbjct: 342 LQQADLISFDTETDALDAMRARLVGISLAVEPGKAAYIPVGHDYPGAPPQLPMQQVLDAL 401 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 +L D ++K+ +G++D+ VL GV V+ T + S + + +H + Sbjct: 402 RPVLQDPAKKKLGQHGKYDLHVLRRH-GVEVQGYHDDTMLESFVLNSTATRHDMDSLALR 460 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG N K + + A + Q+ +YAA D L +L Sbjct: 461 YLGYNTIKFEDVAGKGAKQIPFSQVGIDEASRYAAEDADITLRLHRALQPQLLAE 515 >gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Shigella flexneri 2930-71] Length = 884 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 302 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 361 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 362 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 420 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 421 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 474 >gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1052 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 67/219 (30%), Gaps = 47/219 (21%) Query: 20 VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57 IAVDTET L + + V L+ G I +A Sbjct: 451 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGESGAGAD 508 Query: 58 ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 L +L D K+ ++D++VL + +G+ V P T + S Sbjct: 509 ASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVL-HRYGIDVTPFDDTMLISY 567 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVH 159 + HG+ + + LG +D + D+ YAA D Sbjct: 568 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDRVAIDKATAYAAEDADV 624 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L +L R + + + A ++ G Sbjct: 625 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 663 >gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4] gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1047 Score = 63.1 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 67/219 (30%), Gaps = 47/219 (21%) Query: 20 VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57 IAVDTET L + + V L+ G I +A Sbjct: 446 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGESGAGAD 503 Query: 58 ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 L +L D K+ ++D++VL + +G+ V P T + S Sbjct: 504 ASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVL-HRYGIDVTPFDDTMLISY 562 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVH 159 + HG+ + + LG +D + D+ YAA D Sbjct: 563 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDRVAIDKATAYAAEDADV 619 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L +L R + + + A ++ G Sbjct: 620 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 658 >gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock] Length = 595 Score = 63.1 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%) Query: 3 TIRVHE--GDIP--AECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRI 56 TI V E D+ + +++ +AVDTET GL D +VQ D ++ + Sbjct: 14 TINVVETPEDLAGFRDFIRAHLNCLAVDTETTGLDIYSDTFECRLVQFGTQDE-AWVVPV 72 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLTRT 112 G + V + + R+ + +D+ VL FG+ + ++ T+I ++L Sbjct: 73 ELGDVFIED-VRIAIGALRKVVLQNASYDLQVLDQCFGIEMEDLWPRVLDTQILAKLVDP 131 Query: 113 YT-NQHGLKDNLKELLGINISKAQ 135 G +L+EL+ ISK Q Sbjct: 132 RPFEAGGFGHSLEELIAEFISKEQ 155 >gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v] Length = 605 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + + E A+ A DTET L L + + G I +A Sbjct: 8 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 67 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP+ L +L DEK K+ ++D +L G+ +R + F T + S + Sbjct: 68 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 126 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 127 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 186 Query: 165 LQFTEKLQR 173 L+ LQ+ Sbjct: 187 LKMWPDLQK 195 >gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061] gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus nematophila ATCC 19061] Length = 930 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 30/181 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIV----QLSPGDGTV--DIIRIAAGQKNAP------ 64 ++ A + DTET GL +V ++ G+ V + +A +AP Sbjct: 344 LKHAPAFSFDTETDGLDTLTAN--LVGMSFAIAAGESEVEAAYLPLAHDYLDAPQQLDLH 401 Query: 65 ----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L +L D KI +FD VL V VF T + S + + +H + Sbjct: 402 EVLTALKPLLEDANLPKIGQNLKFDRGVLARYDVVLEGIVFDTMLESYVLNSVAGRHDMD 461 Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171 + L K D L+ Q+ +YAA D L +L Sbjct: 462 SLAERHLSY---KTTTFEDIAGKGKKQLTFNQIPLEEAAKYAAEDADVTLRLHQAMYPQL 518 Query: 172 Q 172 Sbjct: 519 A 519 >gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] Length = 1047 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 68/219 (31%), Gaps = 47/219 (21%) Query: 20 VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57 IAVDTET L + + V L+ G I +A Sbjct: 446 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGESGAGAD 503 Query: 58 ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 L +L D K+ ++D++VL + +G+ VRP T + S Sbjct: 504 ASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVL-HRYGIDVRPFDDTMLISY 562 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVH 159 + HG+ + + LG +D + D+ YAA D Sbjct: 563 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDRVAIDKATAYAAEDADV 619 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L +L R + + + A ++ G Sbjct: 620 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 658 >gi|317502960|ref|ZP_07961050.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315665926|gb|EFV05503.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 223 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 15/173 (8%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 T I ++ D + D + VDTET + + ++ ++Q++ D G Sbjct: 28 TIINENDADKAVDYLL-SCDILGVDTETRPMFRKGEQHKVALLQVASRDTCFLFRLNDIG 86 Query: 60 QKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTN 115 P+++ +L D KI +H D+ L + I + Sbjct: 87 IP--PSVIRLLEDCTVPKIGLSWHD---DLLSLHRRVEFNPGYFVDLQDIVKEI---GIK 138 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 L+ + ISK Q+ ++W AD LSD+Q YAA+D L + Sbjct: 139 DLSLQKLYANIFHQKISKRQRLTNWEADVLSDKQKLYAATDAWACIKLYEEIK 191 >gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] Length = 945 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 16/183 (8%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 DTET GL P D L V + ++ G + + +L EKI H+ +FD Sbjct: 383 DTETTGLNPLMDNLLGVSFCAEPHKAWYMPVS-GPADLEAVRPLLEGPA-EKIGHHLKFD 440 Query: 86 IAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWS 141 + VL G+ V+ P F T +A L +HG+ + LL I + K + Sbjct: 441 LEVL-RANGIHVKGPFFDTLLAHALI-APGMKHGMDVLAENLLQYSTIKL-KDIAAPGAK 497 Query: 142 ADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELD 194 +L + +Y+A D L +++ G L + L A+++ Sbjct: 498 KRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVKESGMEKLFRTVELPLLPVLADME 557 Query: 195 LLG 197 G Sbjct: 558 FSG 560 >gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102] gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102] Length = 981 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 59/176 (33%), Gaps = 26/176 (14%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ----KNAP----------NL 66 +A+DTET L P + L + + G+ + I G + P L Sbjct: 385 SPVALDTETTDLNPFKAELVGIGVCWGEELDALAYIPLGHNGSADSQPVQLPLETVVTAL 444 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 L E K +FD +L V T +A R +HGL+ + Sbjct: 445 APWLGSEDHPKALQNAKFDRLILMRHGLALDGVVIDTLLA-DYLRDAAAKHGLELMAERE 503 Query: 127 LGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 G + K Q +D L + QY A DV L L +L +G Sbjct: 504 FGFQPTAYSDLVGKKQTFAD---VPL-EAASQYCAMDVHVTRRLALLLRNQLAAMG 555 >gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116] gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116] Length = 930 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 347 LKASELFAFDTETDSLDYMVANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQL 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +VL G+ ++ + T +AS + + +H + Sbjct: 407 KPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + +++ + Sbjct: 466 FLQHSCISFEQIAGKGKNQLTFNQIDLDEASPYAAEDADVTLRLHNRLFANIEQDEKLKT 525 Query: 180 ATSCCNF 186 Sbjct: 526 VYEEIEM 532 >gi|321445960|gb|EFX60794.1| hypothetical protein DAPPUDRAFT_341412 [Daphnia pulex] Length = 292 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 37/175 (21%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI- 78 V + D E + + ++QL+ G ++R+ +L +L + K K+ Sbjct: 85 VPILGFDCEWSNVDGNTQPIALIQLASHQGVCSLVRVCCLSTLPESLKNILTNPKILKVE 144 Query: 79 ---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------------GLK 120 + D + L G+ + Y +H GL Sbjct: 145 VVTW----EDASKLKRDLGM------------QFCGGYYVRHLIFRHPKRESLLSKSGLL 188 Query: 121 DNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 ++LLG ++K + + SDW A++LS Q++YAA D + A+ L+ + + Sbjct: 189 GLSEQLLGTVLNKHFSVRCSDWEAENLSTIQVKYAAQDAIASIAICLKLVAETRA 243 >gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1] gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1] Length = 1047 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 68/219 (31%), Gaps = 47/219 (21%) Query: 20 VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57 IAVDTET L + + V L+ G I +A Sbjct: 446 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGESGAGAD 503 Query: 58 ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 L +L D K+ ++D++VL + +G+ VRP T + S Sbjct: 504 ASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVL-HRYGIDVRPFDDTMLISY 562 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVH 159 + HG+ + + LG +D + D+ YAA D Sbjct: 563 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDRVAIDKATAYAAEDADV 619 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L +L R + + + A ++ G Sbjct: 620 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 658 >gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026] gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli UMN026] gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] Length = 928 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L +EK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLENEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5] gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5] Length = 928 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L +EK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLENEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|308501811|ref|XP_003113090.1| hypothetical protein CRE_25297 [Caenorhabditis remanei] gi|308265391|gb|EFP09344.1| hypothetical protein CRE_25297 [Caenorhabditis remanei] Length = 793 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 25/176 (14%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN------LVGMLVDEKREKIFHYGRFDIAVLFY 91 R+ +QL + + + + + + +K I + D+ LF Sbjct: 468 RMATIQLFFNEKVFLVDCVILEKIDISEGMWKKFFESLFHSKKLTVIGFDMKNDMEALFT 527 Query: 92 TFGVR-------VRPVFCTK----IA----SRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 +R V+ C K I + + L ++ELL + + K +Q Sbjct: 528 VRPIRDDFRQEDVKNFICVKRFVEILNEYDASILSLTKKSCRLITLVEELLNLTMDKTEQ 587 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 + +W L Q+ YA+ D V + L + E +++ + + L+D + Sbjct: 588 TGNWQCRPLRKNQIVYASLDAVIVLDLFRKIFEIVKQYEK----QVEIDKLLDESR 639 >gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01] gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01] Length = 930 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 347 LKASELFAFDTETDSLDYMVANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQL 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +VL G+ ++ + T +AS + + +H + Sbjct: 407 KPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + +++ + Sbjct: 466 FLQHSCISFEQIAGKGKNQLTFNQIDLDEASPYAAEDADVTLRLHNRLFANIEQDDKLKT 525 Query: 180 ATSCCNF 186 Sbjct: 526 VYEEIEM 532 >gi|311977815|ref|YP_003986935.1| putative 3'-5' exonuclease [Acanthamoeba polyphaga mimivirus] gi|82050848|sp|Q5UQM4|YR431_MIMIV RecName: Full=Putative 3'-5' exonuclease R431 gi|55417050|gb|AAV50700.1| unknown [Acanthamoeba polyphaga mimivirus] gi|308204825|gb|ADO18626.1| putative 3'-5' exonuclease [Acanthamoeba polyphaga mimivirus] Length = 399 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 17/166 (10%) Query: 19 YVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + I +DTETL +++ I+QLS + II++ NL + DE K Sbjct: 133 KQEIIGLDTETLISGKS--EKISIIQLSTSKHNI-IIQVNQMNTLPQNLNKVFFDESIIK 189 Query: 78 IFHYGRFDIAVLFYTFGVR--VRPVFC-------TKIASRLTRTYTNQHGLKDNLKELLG 128 + D L F ++ T ++ GLK +L Sbjct: 190 VGVAIDIDAKKLLQYFPTINQIKKTLDLSDLFKQTNFTKHISINPKESIGLKILAAHVLD 249 Query: 129 INI-SKAQQ---SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + I +K S+W+ L+ +Q++YA +D + + Sbjct: 250 LYIENKGDSEIKKSNWNNPVLTSDQVKYAITDSYLSLMIYNELQLM 295 >gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523] Length = 897 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 62/194 (31%), Gaps = 36/194 (18%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + A D+ A DTET L L + +G I + P Sbjct: 304 TTQSQLDDLIAELEKSDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLGVP 363 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 L + D K+ K+ H +FD VL V T I + + ++ Sbjct: 364 QQLELGFVLDKLKPLFADVKKAKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSSG 423 Query: 115 NQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDVVH 159 +H + KE LGI K QQ+ D Q+ YAA D Sbjct: 424 -KHDMDSLSKEHLGIEPIAYTAIAGTGKHQQTLD---------QIDIEIVAKYAAEDADI 473 Query: 160 LHALRLQFTEKLQR 173 L F L++ Sbjct: 474 TFRLFNHFKALLEQ 487 >gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120] Length = 810 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 228 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 287 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 288 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 346 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 347 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDSDVTLQLHLKMWPDLQK 400 >gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13] gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13] Length = 994 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 401 AAETGVLAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 460 PLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 519 GMNPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 577 RLAAEGLMSVYE 588 >gi|115930137|ref|XP_001180943.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 336 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 22/161 (13%) Query: 13 AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--- 65 + + + +D E ++ ++ + Q++ + + A + Sbjct: 178 DDWVEKPNAVVGIDMEWKPPFNR--TQKVKVAVCQIATHEKVYLLDMRALWVPETKDIVK 235 Query: 66 --LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCT-----KIASRLTRT 112 +L E K+ D +L +F + +I ++ Sbjct: 236 TFFQRLLQSEDILKLGFGISGDYKMLSQSFLEVQEALKGEKRTVDINGLSKRILQMISAP 295 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 + GL D + G N+ K + SDW LS Q+ YA Sbjct: 296 VNSSFGLTDLVHFCFGKNLDKRDRMSDWEKRPLSQAQMTYA 336 >gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna Polymerase I Complexed With DTMP gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna Polymerase I Complexed With Deoxynucleoside Triphosphate And Pyrophosphate Length = 605 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 23 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 83 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 142 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 >gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 1047 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 70/219 (31%), Gaps = 47/219 (21%) Query: 20 VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57 IAVDTET L + + V L+ G I +A Sbjct: 446 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGESGAGAD 503 Query: 58 ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 L +L D K+ ++D++VL + +G+ VRP T + S Sbjct: 504 ASDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVL-HRYGIDVRPFDDTMLISY 562 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD---WSADDLS------DEQLQYAASDVVH 159 + HG+ + + LG +D + ++ D+ YAA D Sbjct: 563 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDHVAIDKATAYAAEDADV 619 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L +L R + + + A ++ G Sbjct: 620 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 658 >gi|145352247|ref|XP_001420464.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580698|gb|ABO98757.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 389 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 22/168 (13%) Query: 38 RLCIVQLSPGDGTVD--IIRIAAGQK--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 + +VQ++ + + ++ +A D R K R D L + Sbjct: 60 KTSLVQIAVANEDLSEKLVVLARIHTAGLTRRFKRWTRDGARGKTGFNVRGDARKLVRDY 119 Query: 94 GVRVRPVFCTKIAS--RLTRTYT--NQHGLKDNLKELLGINISKAQQS-SDWSADDLSDE 148 G+ V + + R L + +LG + K + S+W ++L++ Sbjct: 120 GLEPSRVIELSVLAKERFEGGCPSAPSWSLARLCEHVLGKTLPKDKTRMSNWEREELNES 179 Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS------CCNFLMDR 190 Q++YAA D + ++ D+ S C+ L + Sbjct: 180 QIKYAAMDAWASLLVYRALMKR-------DVVESFGGEPYECDPLPEP 220 >gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Manganese gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc Only gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And Manganese gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate And Europium (Iii) Ion gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Short Dna Fragment Carrying 2'-0- Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3' gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Tetramer Carrying 2'-O-(3-Aminopropyl)- Rna Modification 5'-D(Tt)-Ap(U)-D(T)-3' gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431] gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G] gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180] gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357] gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74] Length = 605 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 23 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 83 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 142 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 >gi|157133258|ref|XP_001656204.1| hypothetical protein AaeL_AAEL012676 [Aedes aegypti] gi|108870909|gb|EAT35134.1| conserved hypothetical protein [Aedes aegypti] Length = 200 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 11/159 (6%) Query: 21 DAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + D E ++G ++ ++QL+ G ++++ L +L +++ Sbjct: 44 PVLGFDCEWWCTSSMGNNR---KVALLQLASAGGLCILVQMTRLHSIPQELSDLLHNDRI 100 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ D L +G+ +R + ++ +G+K K +LG + K + Sbjct: 101 LKVGIGPLADGIKLHQDYGLALRGTMDLQTLAQRLDVPVP-YGMKALAKSVLGFEMDKKK 159 Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 S+W L+ Q+ YA+ D + + F +++Q Sbjct: 160 NVILSNWERPLLTKRQIDYASKDAIVGLEIFRAFNQRIQ 198 >gi|333014001|gb|EGK33362.1| DNA polymerase I domain protein [Shigella flexneri K-227] Length = 605 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 23 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 83 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 142 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 >gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] Length = 931 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D A DTET L L + + +G + +A +AP L Sbjct: 348 LKAADVFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLAQL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL + ++ + T +AS + + +H + Sbjct: 408 KPILEDDTQAKVGQNLKYDASVLARY-NIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + L+ Q++ YAA D L + +++ + Sbjct: 467 FLQHSCISFEQIAGKGKKQLTFNQIELDQASPYAAEDADVTLRLHNRLMANIEKDEQLKA 526 Query: 180 ATSCCNF 186 Sbjct: 527 IYEEIEV 533 >gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167] Length = 928 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIELGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|222628291|gb|EEE60423.1| hypothetical protein OsJ_13625 [Oryza sativa Japonica Group] Length = 290 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 12/161 (7%) Query: 17 ARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A ++ D E PRR ++ ++QL ++ I P L +L D Sbjct: 125 ASGQVSLGFDLE-WRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSGV-PPVLKSLLED 182 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131 K+ D +F + V V+P+ + +A+ + L + + + Sbjct: 183 SSSVKVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCREL 242 Query: 132 SKAQ--QSSDWSADDLSDEQLQYAASDV---VHLHALRLQF 167 K + +W A LS +QLQYAA+D HL+ + Sbjct: 243 PKPSNIRMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQSL 283 >gi|115456978|ref|NP_001052089.1| Os04g0129200 [Oryza sativa Japonica Group] gi|38346519|emb|CAE03814.2| OSJNBa0027H09.14 [Oryza sativa Japonica Group] gi|113563660|dbj|BAF14003.1| Os04g0129200 [Oryza sativa Japonica Group] gi|116317897|emb|CAH65924.1| OSIGBa0131J24.2 [Oryza sativa Indica Group] Length = 298 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 12/161 (7%) Query: 17 ARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 A ++ D E PRR ++ ++QL ++ I P L +L D Sbjct: 125 ASGQVSLGFDLE-WRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSGV-PPVLKSLLED 182 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131 K+ D +F + V V+P+ + +A+ + L + + + Sbjct: 183 SSSVKVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCREL 242 Query: 132 SKAQ--QSSDWSADDLSDEQLQYAASDV---VHLHALRLQF 167 K + +W A LS +QLQYAA+D HL+ + Sbjct: 243 PKPSNIRMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQSL 283 >gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 934 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L P + L + ++ G + AP L Sbjct: 352 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQALAQL 411 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 412 APLLTDPAVRKLGQHGKYDLHVMRRHGVELAGYAEDTLLESFVLNSGSARHDMDSLAKRY 471 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + A + Q+ +YAA D L +L Sbjct: 472 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLTSE 525 >gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T] gi|332997589|gb|EGK17204.1| DNA polymerase I domain protein [Shigella flexneri VA-6] Length = 605 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 23 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 83 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 142 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 >gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis] Length = 920 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 16/169 (9%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGML 70 A DTET L R ++ ++ + +A + AP + +L Sbjct: 346 KRFAFDTETTSLDYRIAQIVGFSVAFDAQDAYYVPLAHDYEGAPEQLNREVILAQIKPIL 405 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 DE +KI H+ ++D VL F T +AS + + +HG+ D + L Sbjct: 406 EDESVKKIGHHLKYDAHVLENHGIHLAGWYFDTMLASYVLYSVATRHGMDDVARLYLSHL 465 Query: 131 ISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 + +Q + A + Q+ YAA D + L + KLQ Sbjct: 466 TTTYEQVAGRGAKQKTFNQIPLETAAHYAAEDAHVTYRLYEVLSSKLQA 514 >gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627] gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627] Length = 928 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 22/217 (10%) Query: 4 IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + D R A DTET L L + + G + +A Sbjct: 331 VTILDEDTLKAWITRLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYVPVAHDYL 390 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP L +L DEK K+ ++D +L + +R + F T + S + Sbjct: 391 DAPEQISRERVLELLKPLLEDEKALKVGQNLKYDRGILANY-DIELRGIAFDTMLESYIL 449 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + + L ++ + + L+ Q+ +YAA D L Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509 Query: 165 LQFTEKLQR-LGRSDLATS-CCNFLMDRAELDLLGWE 199 L+ +LQ+ G ++ + + + ++ G + Sbjct: 510 LKMWPELQKHKGPLNVFENIEMPLVPVISRIERNGVK 546 >gi|301100864|ref|XP_002899521.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262103829|gb|EEY61881.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 1101 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 56/159 (35%), Gaps = 30/159 (18%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVR---- 96 +Q++ D + + L + + KI DI L ++F Sbjct: 943 LQVACDDYVFIFDFMEMAIGDLEELFEHLFTSDTIVKIGFAINGDIKRLRWSFPEVKCFD 1002 Query: 97 -VRPV----FCTKIAS--------------------RLTRTYTNQHGLKDNLKELLGINI 131 V F T +A+ +L R Q GL +K+ L + + Sbjct: 1003 TFVNVLDFSFDTFVATTHLADGTIIPTQSDDTSSLDKLQRRRRRQKGLSTYIKQALELPL 1062 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 SK QQ SDW L+ +Q+ YAA D L L+ K Sbjct: 1063 SKLQQKSDWERRPLTTQQVGYAALDAYCLLMLQDAVASK 1101 >gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] Length = 931 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 348 LKAAELFAFDTETDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + + T +AS + + +H + Sbjct: 408 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q++ YAA D L + +++ + Sbjct: 467 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKS 526 Query: 180 ATSCCNF 186 Sbjct: 527 VYEEIEM 533 >gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329] Length = 930 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 347 LKAAELFAFDTETDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + + T +AS + + +H + Sbjct: 407 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALR 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q++ YAA D L + +++ + Sbjct: 466 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKS 525 Query: 180 ATSCCNF 186 Sbjct: 526 VYEEIEM 532 >gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] Length = 931 Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 348 LKAAELFAFDTETDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + + T +AS + + +H + Sbjct: 408 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q++ YAA D L + +++ + Sbjct: 467 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKS 526 Query: 180 ATSCCNF 186 Sbjct: 527 VYEEIEM 533 >gi|198277310|ref|ZP_03209841.1| hypothetical protein BACPLE_03522 [Bacteroides plebeius DSM 17135] gi|198269808|gb|EDY94078.1| hypothetical protein BACPLE_03522 [Bacteroides plebeius DSM 17135] Length = 213 Score = 62.3 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 14/167 (8%) Query: 23 IAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + VDTET R +++ ++Q+S D P+ + + KI Sbjct: 47 VGVDTET--RPSFRKGAVNKVALLQVSTYDTCFL---FRLNHLGLPDFLEEFLQNDVLKI 101 Query: 79 FHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 + D A+L R ++ + + L+ L ISK+Q+ Sbjct: 102 GLSLKDDFAMLRRRNQKDPRMGNW--VELQDYVASFGIEEKSLQKIYALLFQEKISKSQR 159 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 S+W AD L++ Q YAA+D + E+L+ G+ + + Sbjct: 160 LSNWEADTLTEAQQLYAATDAWACVRIYQYL-EELRLSGKYRVIRTE 205 >gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13] gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653] gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653] Length = 978 Score = 62.3 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 385 AAETGVLAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 444 PLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 503 GMNPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 561 RLAAEGLMSVYE 572 >gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168] gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168] Length = 928 Score = 62.3 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G + +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNITANLVGLSFAVEPGVAAYVPVAHDYLDAPDQIARDRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVSKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] Length = 931 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 348 LKASELFAFDTETDSLDYMVANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDREWVLAQL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + T +AS + + +H + Sbjct: 408 KPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + +++ + + Sbjct: 467 FLQHSCISFEQLAGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNA 526 Query: 180 ATSCCNF 186 Sbjct: 527 IYQEIEV 533 >gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1] gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter sp. ADP1] Length = 920 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 16/171 (9%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + A+DTET L R + ++ + + NAP L Sbjct: 343 QSEKRFAIDTETTSLDYRVAEMVGFSVAFDAQDAYYVPLTHDYDNAPEQLNREQILAQLK 402 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L DE KI H+ ++D + F T +AS + + +HG+ D + L Sbjct: 403 PILEDETVHKIGHHLKYDAHIFANHSVELKGWYFDTMLASYVINSVATRHGMDDVARVYL 462 Query: 128 GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 + +Q + A + Q++ YAA D + L +KL+ Sbjct: 463 SHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLAQKLK 513 >gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016] gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016] Length = 957 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 374 LKASELFAFDTETDSLDYMVANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQL 433 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + T +AS + + +H + Sbjct: 434 KPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 492 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + +++ + + Sbjct: 493 FLQHSCISFEQLAGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNA 552 Query: 180 ATSCCNF 186 Sbjct: 553 IYQEIEV 559 >gi|270008688|gb|EFA05136.1| hypothetical protein TcasGA2_TC015251 [Tribolium castaneum] Length = 317 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 39/170 (22%), Gaps = 59/170 (34%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + VD E + C+VQ+S D I IA L DE Sbjct: 144 DLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIA------------LKDE-- 188 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 H D ++ K Sbjct: 189 ---LHALNED----YHVAK-------------------------------------DKTM 204 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 Q D+ L + YA D +L + +L CN Sbjct: 205 QRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCN 254 >gi|307108694|gb|EFN56933.1| hypothetical protein CHLNCDRAFT_143460 [Chlorella variabilis] Length = 328 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 27/178 (15%) Query: 12 PAECAAR---YVDAIAVDTETLGL------MPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 PA R IA+D E + + +VQL+ D V + G Sbjct: 144 PALMLLRDSMPTPYIAIDLEWPSTDVPAYSHSFQG-VALVQLASADTCVLVRTCLLGFP- 201 Query: 63 APNLVGMLVDEKREKI-FHYGRFDIAVLFYTFG---VRVRPVF-CTKIASRLTRTYTNQH 117 L L D I H+G D + +FG F S + + Sbjct: 202 -RELSNFLRDPSICFIGMHWGTQDADKMHDSFGWHHCDFHGGFVDAGTRSMARQAGYPRP 260 Query: 118 GLKDNLKELLGINISKAQQS----------SDWSADDLSDEQLQYAASDVVHLHALRL 165 GLK + L I++ K++++ S+W+A LS Q++YAA D + + Sbjct: 261 GLKGMAESLFAIDLPKSKKARTYFWKRVTLSNWAAASLSGSQVRYAALDALFTFHIYE 318 >gi|262380470|ref|ZP_06073624.1| 3'-5' exonuclease [Acinetobacter radioresistens SH164] gi|262297916|gb|EEY85831.1| 3'-5' exonuclease [Acinetobacter radioresistens SH164] Length = 218 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 11/134 (8%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ + V + ++ N L +L ++K+ K+ + D+ + G+ ++ Sbjct: 73 LIQLATAE-KVFLFQLNPDILN--FLKPILANQKQVKVGFGLKNDVHLFQKK-GIELQS- 127 Query: 101 FCTKIASRL--TRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASD 156 T S+ + GLK+ + L N K++ SDWS LS Q+ YAA+D Sbjct: 128 --TVELSKCFSAFGFKQPVGLKNAVALLFQQNFPKSKKISMSDWSNMRLSSAQIGYAAAD 185 Query: 157 VVHLHALRLQFTEK 170 V + + ++ Sbjct: 186 VYAALLVFQELRKR 199 >gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6] gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6] Length = 931 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 348 LKASELFAFDTETDSLDYMVANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + T +AS + + +H + Sbjct: 408 KPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + +++ + + Sbjct: 467 FLQHSCISFEQLAGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNA 526 Query: 180 ATSCCNF 186 Sbjct: 527 IYQEIEV 533 >gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638] gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638] Length = 930 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 76/202 (37%), Gaps = 20/202 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L + + + G + +A +APN L Sbjct: 348 LKKAPVFAFDTETDSLDNISANMVGLSFATEPGMAAYVPVAHDYLDAPNQISRERVLELL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK +K+ +FD +L G+ +R + + T + S + + +H + Sbjct: 408 KPLLEDEKAKKVGQNLKFDRGILQNY-GIELRGIAYDTMLESYILNSVAGRHDMDSLSDR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ-RLGRSD 178 L ++ + + L+ Q+ +YAA D L L+ KLQ + G + Sbjct: 467 WLKHKTVTFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQKQEGPLN 526 Query: 179 LATS-CCNFLMDRAELDLLGWE 199 + + + ++ G + Sbjct: 527 VFEHIEMPLVPVISRIERNGVK 548 >gi|157133254|ref|XP_001656202.1| hypothetical protein AaeL_AAEL012676 [Aedes aegypti] gi|157133256|ref|XP_001656203.1| hypothetical protein AaeL_AAEL012676 [Aedes aegypti] gi|108870907|gb|EAT35132.1| conserved hypothetical protein [Aedes aegypti] gi|108870908|gb|EAT35133.1| conserved hypothetical protein [Aedes aegypti] Length = 257 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 11/159 (6%) Query: 21 DAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + D E ++G ++ ++QL+ G ++++ L +L +++ Sbjct: 44 PVLGFDCEWWCTSSMGNNR---KVALLQLASAGGLCILVQMTRLHSIPQELSDLLHNDRI 100 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ D L +G+ +R + ++ +G+K K +LG + K + Sbjct: 101 LKVGIGPLADGIKLHQDYGLALRGTMDLQTLAQRLDVPVP-YGMKALAKSVLGFEMDKKK 159 Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 S+W L+ Q+ YA+ D + + F +++Q Sbjct: 160 NVILSNWERPLLTKRQIDYASKDAIVGLEIFRAFNQRIQ 198 >gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] Length = 976 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 59/204 (28%), Gaps = 50/204 (24%) Query: 17 ARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAG---------------- 59 AR +AVDTET GL D + + ++ G I + G Sbjct: 364 ARKQGFLAVDTETTGLNASAVDLVG-ISMAIAPGQACYIPLRHGATNDSAVGSGVAVQGG 422 Query: 60 ----QKNAP-------------NLVGMLVDEKREKIFHYGRFDIAVLF--YTFGVRVRPV 100 + P + + D KI H ++D VL G+ + PV Sbjct: 423 LNFSDDDTPAHYPQLDFETAMAEIKPLFEDPAVLKIGHNLKYDAHVLMRPRNGGINLAPV 482 Query: 101 FCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSSDWSAD-----DLS----DEQL 150 T S + +H + L K SD S + L Sbjct: 483 DDTMCLSYVLDGGRVERHSMDYLAGHWLDYTTIK---FSDVCGKGAKQIPFSELAPEAAL 539 Query: 151 QYAASDVVHLHALRLQFTEKLQRL 174 YAA D L + +L Sbjct: 540 DYAAEDADITLRLWMILKPRLAGE 563 >gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] Length = 937 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 18/178 (10%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVG 68 D A DTET GL L + + G + +A +AP L Sbjct: 340 QADLFAFDTETDGLDIINANLIGLSFAITPGEAAYLPLAHDYSDAPIQLDRTLVLDKLKP 399 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + +++K+ +FD ++L G+ ++ + F T + S + T +H + + L Sbjct: 400 LLENPQKQKVGQNLKFDKSILAR-CGIVLQGIAFDTMLESYILNTVAGRHDMDSLSQRYL 458 Query: 128 GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ + L+ Q+ YAA D L +LQ+ Sbjct: 459 QHKTITFEEIAGKGKSQLTFNQIALEQAAPYAAEDADITLRLHHCLWPQLQQSKALSW 516 >gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] Length = 933 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 29/184 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------- 57 A +AVDTET GL L + L G I + Sbjct: 342 AYERGWVAVDTETTGLNEMIADLVGISLCIEPGEACYIPLTHRESATDDLFGSDALAEGQ 401 Query: 58 -AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + L + D KI ++D + GV V P+ T + S + Sbjct: 402 MPLDEALTLLKPVFEDSSILKIGQNMKYDAKIFARY-GVNVVPIDDTMLMSYAMHGGKHG 460 Query: 117 HGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 HG+ + L + + + + + + YAA D L F Sbjct: 461 HGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKVPIDEA-TAYAAEDADITLRLWKLFKP 519 Query: 170 KLQR 173 +L + Sbjct: 520 QLHQ 523 >gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2] gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2] Length = 893 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 20/199 (10%) Query: 17 ARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVG 68 R + A+D ET L P D + + +S I + ++ L Sbjct: 314 LRESPSFAIDLETSSLDPFDCDIVG-ISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKLKE 372 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L D + + +FD VL V P F T IA+ L + L D + LG Sbjct: 373 ILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPHFDTMIAAYLLEPNEKKFNLDDLALKFLG 432 Query: 129 INISKAQQSSDWSADDL---------SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ Q+ +S+ L ++ Y+ D + L + KL ++ Sbjct: 433 YKMTSYQELMSFSS-PLFGFSFADVPVEKAANYSCEDADITYRLYKILSLKLHEADLENV 491 Query: 180 -ATSCCNFLMDRAELDLLG 197 + A ++L G Sbjct: 492 FYKIEMPLVSVLARMELNG 510 >gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] Length = 948 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 59/188 (31%), Gaps = 33/188 (17%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58 R IAVDTET L R L + L+ G I + Sbjct: 353 RAARIIAVDTETSALDAMRADLVGISLATGANEACYIPLGHLNDGGGGSDMFSEKPEQVP 412 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA-----SRLTRTY 113 L +L + KI ++D+ VL G+ V P+ T I + + Sbjct: 413 LDDAVAALKPLLESDAVLKIGQNIKYDLNVLARY-GIAVAPIDDTMILSFDLDAGRSEGG 471 Query: 114 TNQHGLKDNLKELLGIN-ISKAQ------QSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 HG+ + + LG +S + + + L +YAA D L Sbjct: 472 VGGHGMDELSERHLGHTPLSFKEVCGTGRKQIPFGEVPLDKA-TEYAAEDADVTWRLHQH 530 Query: 167 FTEKLQRL 174 +L Sbjct: 531 LKPRLAIE 538 >gi|126283020|ref|XP_001378586.1| PREDICTED: similar to exonuclease 3-5 domain-like 2, [Monodelphis domestica] Length = 496 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 8/134 (5%) Query: 44 LSPGDGTVDIIRIAA---GQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G +IR+ G+ P LV +L D + K+ D + L + + VR Sbjct: 1 MASPTGYCILIRLPKLISGEAGFPQTLVDLLEDSRILKVGVGCWEDASKLLREYDLTVRG 60 Query: 100 VFCTK-IASRLTR-TYTNQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAAS 155 + +A R R N LK + +L + K+ +SS+W A+DL+ EQ+ YAA Sbjct: 61 CLDLRNLAMRQRRDLLPNGLSLKFLAETILSFPLDKSPLLRSSNWDAEDLTKEQVAYAAR 120 Query: 156 DVVHLHALRLQFTE 169 D AL L E Sbjct: 121 DAQISVALFLHLLE 134 >gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] Length = 928 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 19/194 (9%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEK 74 IA+DTET GL + + S I Q+ + +L ++K Sbjct: 354 PFKEIALDTETTGLEAMEAEIVGISFSVKKNEAYYIPFPKDQEETKKRLNIIKPLLENKK 413 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG------ 128 KI ++D+ +L V +F T IA + + +H + + L Sbjct: 414 SLKIGQNIKYDLLILKNYGIEVVGKLFDTMIAHYVVQPEL-RHNMDYLAEIYLNHITIPI 472 Query: 129 ---INISKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDL-ATSC 183 I Q S +LS E + YA D L+ + L+ +L T Sbjct: 473 EDLIGPKGKNQKS---MRELSPEDVYIYACEDADITFQLKNAIEKDLKENQAEELFYTIE 529 Query: 184 CNFLMDRAELDLLG 197 + +++ G Sbjct: 530 MPLVPVLTDMEYTG 543 >gi|308501869|ref|XP_003113119.1| CRE-MUT-7 protein [Caenorhabditis remanei] gi|308265420|gb|EFP09373.1| CRE-MUT-7 protein [Caenorhabditis remanei] Length = 943 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 22/166 (13%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN------LVGMLVDEKREKIFHYGRFDIAVLFY 91 ++ I+QL D + + +K P+ + + + I R D+ + Sbjct: 465 KIAIIQLYFKDKVYLVDCVQLEEKRLPDERWQEFARQLFGSKNLKIIGFDMRNDLDAIIA 524 Query: 92 TFGVR-------VRPVFCTKIASR--------LTRTYTNQHGLKDNLKELLGINISKAQQ 136 +R ++ F K + + L D + LLG + K +Q Sbjct: 525 LPALRETLAIDSIQNCFDLKRLAENICEIDMEILDLKRKTFKLADLTQSLLGQTLDKTEQ 584 Query: 137 SSDWSADDLSDEQLQYAASD-VVHLHALRLQFTEKLQRLGRSDLAT 181 S+W + L QL YAA D VV + L++ D+ Sbjct: 585 CSNWQSRPLRKNQLLYAALDAVVVVLTFEKILEITLEKNSEIDIIE 630 >gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 930 Score = 62.3 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 20/202 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L + + + G + +A +AP L Sbjct: 348 LKKAPVFAFDTETDSLDNITANMVGLSFATEPGIAAYVPVAHDYLDAPEQLSRERVLELL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ K+ ++D +L G+ +R + F T + S + + +H + Sbjct: 408 KPILEDDNALKVGQNLKYDRGILQNY-GIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ +YAA D L L+ KLQ+ G + Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQKHEGPLN 526 Query: 179 LATS-CCNFLMDRAELDLLGWE 199 + + + + ++ G + Sbjct: 527 VFQNIEMPLVPVLSRIERNGVK 548 >gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131] gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131] Length = 930 Score = 61.9 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 62/202 (30%), Gaps = 22/202 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L + RL + + G + + +AP + Sbjct: 346 LSKASLFAFDTETDSLDTQEARLVGMSFAIEPGHAAYLPLGHDYLDAPVQLPLEEVLELM 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNL 123 +L E KI ++D VL + ++ + + T + S + +H + Sbjct: 406 KPILESENILKIGQNLKYDAEVLENY-DIELKGIGYDTMLESYVLNSVAGMGRHDMDSLA 464 Query: 124 KELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRS 177 L ++ + L+ Q+ YAA D L +L+ + Sbjct: 465 DRHLNHKTVSFEEIAGKGKKQLTFNQIALEEAANYAAEDADVTLLLHQALYPQLEAEPKL 524 Query: 178 DLATS--CCNFLMDRAELDLLG 197 + + ++ G Sbjct: 525 NHIFQNIEMPLVPVLVRMERKG 546 >gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806] Length = 956 Score = 61.9 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 20/121 (16%) Query: 22 AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNL---------VG 68 +A DTET L PR +L C G + I G +N NL Sbjct: 367 PVAWDTETTDLNPRVAKLVGIGC----CWGKELNAMAYIPIGHQNGDNLNLEIVLEKLRP 422 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + K+F +FDI V ++ G+ V+ + F T +AS + H L+D L Sbjct: 423 ILASDNYPKVFQNAKFDIDVFYHQ-GITVKGLVFDTMVASYVLHPELT-HNLEDLCDRYL 480 Query: 128 G 128 Sbjct: 481 D 481 >gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118] gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118] Length = 933 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L P + L + ++ G + AP L Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQALAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 411 APLLTDPAVRKLGQHGKYDLHVMRRHGVALAGYADDTLLESFVLNSGSARHDMDSLAKRY 470 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + A + Q+ +YAA D L +L Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLASE 524 >gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336] gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336] Length = 951 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 38/194 (19%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---------------- 60 + D IAVDTET L P R L + + +G I +A Q Sbjct: 350 LQQADLIAVDTETDALDPMRANLVGISFALTNGEACYIPLAHKQAVKEMTQTDLFTESEQ 409 Query: 61 ---------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105 L +L + +KI ++D+ + F T + Sbjct: 410 NAEQFELVKNQLNKETCLAQLKPLLENPSIQKIGQNIKYDLTIFANHHIQLNGVCFDTML 469 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVH 159 S + + T +H + + LG + + + + ++ +++ +YAA D Sbjct: 470 QSYVLDS-TGRHNMGALSERYLGHQVIEFESIAGKGKKQVTFDKIAIAQATEYAAEDADI 528 Query: 160 LHALRLQFTEKLQR 173 L ++LQ+ Sbjct: 529 TMKLHQVLWQELQQ 542 >gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 933 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L P + L + ++ G + AP L Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQALAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 411 APLLTDPAVRKLGQHGKYDLHVMRRHGVALAGYADDTLLESFVLNSGSARHDMDSLAKRY 470 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + A + Q+ +YAA D L +L Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLASE 524 >gi|268537368|ref|XP_002633820.1| Hypothetical protein CBG19850 [Caenorhabditis briggsae] Length = 574 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 33/167 (19%) Query: 23 IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKREKIF 79 + VD E L L ++ + I +A+ G+L EK K+ Sbjct: 327 VGVDGEIFLS-------LGVI---ATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT----------------YTNQHGLKDNL 123 H R ++L + + V +R VF T++A L + + +L Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHDKFGKPVHEMRPITFINLQRVYYPQSL 436 Query: 124 KELLGINISKAQQSSDWSADDLSDE-QLQYAASDVVHLH-ALRLQFT 168 L + K QS +W +++E QL + L AL + Sbjct: 437 M-LSDVTPRKMSQSPNWGVRPITEEFQLT-IVEEAHCLLSALYQALS 481 >gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1] gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1] Length = 928 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 22/215 (10%) Query: 4 IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 + + + D+ + + A D ET L + + + G + +A Sbjct: 330 VTILDQDLFDSWLEKLKNSEVFAFDLETDALDTLSANIVGISFAIAPGEAAYLPVAHDYL 389 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 +AP L +L D+ K+ ++D VL + + + F T + S + Sbjct: 390 DAPEQLDRAAVLAQLKPLLEDDSAWKVGQNLKYDRGVLKNY-DIELAGIKFDTMLESYIL 448 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + +H + L Q+ + + L+ Q+ YAA D L Sbjct: 449 NSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLTFNQIALEQASHYAAEDADVTLQLH 508 Query: 165 LQFTEKLQRLG--RSDLATSCCNFLMDRAELDLLG 197 L+ +L++ R L + ++ G Sbjct: 509 LKMWPELEKEAGPRKVFEQIEMPLLTVISRIERNG 543 >gi|302831237|ref|XP_002947184.1| hypothetical protein VOLCADRAFT_87286 [Volvox carteri f. nagariensis] gi|300267591|gb|EFJ51774.1| hypothetical protein VOLCADRAFT_87286 [Volvox carteri f. nagariensis] Length = 847 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 18/158 (11%) Query: 23 IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 IA+D E T+ + ++QLS V + G P L L D + Sbjct: 624 IAIDLEWRPETVSGRV--SPVALLQLSSASVCVVVRTCCMGYDLPPALRSFLKDPAHVLL 681 Query: 79 FHY---GRFDIAVLFYTFGV---RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + + TFG+ R + + + GL + +LG+ + Sbjct: 682 GFGWDSADE-LK-MQGTFGIGRADFRRFLDLQEVAASLGYHG--FGLSRLSQLVLGLPLH 737 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 K++ S+W+A L+ QL+YA+ DV+ L Sbjct: 738 KSKAISRSNWAAPQLTSHQLKYASLDVLVAGQLFRALR 775 >gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDDKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp] gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp] Length = 931 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 32/182 (17%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + + IA D+ET + ++ +L + + G + +A P L Sbjct: 346 LQQAELIAFDSETTSIDAQQAQLVGLSFAVKAGEAAYVPLAHSYMGVPQQLDRDAVLKAL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120 +L D + K+ + ++DI VL P+ F T + S + + +H + Sbjct: 406 KPILEDPAKAKVGQHAKYDINVLANA----STPIAVQGVAFDTMLESYVLDSTATRHDMD 461 Query: 121 DNLKELLGINISKAQQSSDWSAD---DLSDEQLQ------YAASDVVHLHALRLQFTEKL 171 + LG + + D + L+ +Q+ YAA D L + +L Sbjct: 462 SLALKYLGHS---TIRFEDIAGRGAKQLTFDQIALEQAGPYAAEDADVTLRLHQELWGRL 518 Query: 172 QR 173 + Sbjct: 519 EA 520 >gi|58263260|ref|XP_569040.1| hypothetical protein CNB05310 [Cryptococcus neoformans var. neoformans JEC21] gi|57223690|gb|AAW41733.1| hypothetical protein CNB05310 [Cryptococcus neoformans var. neoformans JEC21] Length = 912 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 14/147 (9%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI----FHYGRFDIAVLFYTFGVR 96 +VQL V I + + ++ D K K+ GR + + F Sbjct: 342 LVQLCDEKMIVLI-HLQDKMDLPAKVAELVRDPKIYKLGVQSMGDGRKLVRDFPHHFRQG 400 Query: 97 -VRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINISKAQ--QSSDWSADDLSDE 148 ++ + HG L + LG + K + DW A +L++ Sbjct: 401 GPAGLYELSRMAHAIDPQRAGHGSRLIKLATLCRAYLGKELDKDTKIRRGDW-AGELNEV 459 Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLG 175 Q YAA+DV + + + Sbjct: 460 QKAYAANDVFVSIQIFNALRKLAEERN 486 >gi|134107722|ref|XP_777472.1| hypothetical protein CNBB0460 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260164|gb|EAL22825.1| hypothetical protein CNBB0460 [Cryptococcus neoformans var. neoformans B-3501A] Length = 912 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 14/147 (9%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI----FHYGRFDIAVLFYTFGVR 96 +VQL V I + + ++ D K K+ GR + + F Sbjct: 342 LVQLCDEKMIVLI-HLQDKMDLPAKVAELVRDPKIYKLGVQSMGDGRKLVRDFPHHFRQG 400 Query: 97 -VRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINISKAQ--QSSDWSADDLSDE 148 ++ + HG L + LG + K + DW A +L++ Sbjct: 401 GPAGLYELSRMAHAIDPQRAGHGSRLIKLATLCRAYLGKELDKDTKIRRGDW-AGELNEV 459 Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLG 175 Q YAA+DV + + + Sbjct: 460 QKAYAANDVFVSIQIFNALRKLAEERN 486 >gi|322696271|gb|EFY88066.1| putative Werner syndrome helicase [Metarhizium acridum CQMa 102] Length = 551 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 28/177 (15%) Query: 22 AIAVDTETLGLMPR-------RDRLCIVQLSPGD--GTVDIIRIAAGQKN--APNLVGML 70 + +D E P RD + ++Q++ G + A G+ + AP L +L Sbjct: 201 VLGLDLE---WFPYASRSSGPRDNVSLIQIASPGRIGLFHVAMFAEGEDDLVAPTLRTIL 257 Query: 71 VDEKREKI-FHYGRFDIAVLFYTFGVRVRPVFC-----TKI---ASRLTRTYTN-QHGLK 120 D K+ H D L V+VR +F ++ A++ + L Sbjct: 258 EDPNVSKVGVHIQG-DCTRLKKYLDVQVRGIFELSHLYKQVKYTAAKTPKLINKVAVALS 316 Query: 121 DNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + ++L + + K +SS+W L +Q+ Y+ASD L K +RL Sbjct: 317 TQVHDILKLPLFKGDVVRSSNWMKR-LYYKQVLYSASDAYAGIQLYHVLDAKRKRLN 372 >gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 934 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 16/174 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L P + L + ++ G + AP L Sbjct: 352 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQALAQL 411 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 412 APLLTDPAVRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 471 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + A + Q+ +YAA D L +L Sbjct: 472 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLTSE 525 >gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843] gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843] Length = 956 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 37/177 (20%) Query: 22 AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNL---------VG 68 +A DTET L PR +L C G + I G ++ NL Sbjct: 367 PVAWDTETTDLNPRVAKLVGIGC----CWGKELNAMAYIPIGHQSGDNLNLEIVLEKLRP 422 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + K+F +FDI V ++ G+ V+ + F T +AS + H L+D L Sbjct: 423 ILASDDYPKVFQNAKFDIDVFYHQ-GITVKGLVFDTMVASYVLHPELT-HNLEDLCDRYL 480 Query: 128 ---------GINISKAQQSSDWSADDLSDEQLQYAASD--VVHLHALRLQFTEKLQR 173 + I + +D + Y D +L LR + +L + Sbjct: 481 TGITSLSYKSLGIPAGKTIAD-LDIPTTA---NYCGLDAYATYL--LREKLQAELTK 531 >gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017] gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017] Length = 957 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 29/180 (16%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRI-------AAGQKN 62 E +A DTET L PR L C Q + + I + + Sbjct: 359 ESCTDGNQPVAWDTETDSLSPRDAHLVGIGCCWQ--GEEQAIAYIPVGHKEGDNLDLETA 416 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121 L +L + K+ +FD V + G++++ V F T +A+ + H L D Sbjct: 417 LEGLRPILESDVYPKVLQNAKFDRLVFQFQ-GIQLQGVVFDTMLANYVLNPE-RSHNLTD 474 Query: 122 NLKELLGIN-------ISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173 + L I + K Q +D LS Q+ +Y DV + LR + +L Sbjct: 475 LSRNYLQITAKSYKELVKKGQTIAD-----LSITQVAEYCGLDVFTTYQLREKLEAELAA 529 >gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] Length = 911 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 24/179 (13%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVG 68 D A DTET L + +L + S G + +A +AP L Sbjct: 330 GADLFAFDTETTSLDYMQAQLVGMSFSVKAGEAAYLPVAHDYPDAPEQLSLEFVMQKLGP 389 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L D + K+ ++D +VL G + + F T + S + + +H + + L Sbjct: 390 ILADANKAKVGQNLKYDKSVLANA-GYELNGIKFDTMLESYVFNSVGTRHDMDSLALKYL 448 Query: 128 GINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177 G K D L+ Q++ YAA D L K++ + Sbjct: 449 GH---KNISFEDIAGKGKKQLTFNQIELDKAAPYAAEDADITLRLHEVLWPKIEADEKL 504 >gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] Length = 920 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 74/191 (38%), Gaps = 21/191 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKREKI 78 +++DTET + L + S + + I+ ++ A N+V + +E+ K+ Sbjct: 350 LSLDTETTSVDAIDAELVGLSFSVEEKEAFYVAISPNREEALNMVNIFKPLYENEEILKV 409 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS--- 132 ++D VL +F T IA L + + H + + LL ++I Sbjct: 410 GQNIKYDYEVLKKYGITLKGKLFDTMIAHYLIQPELH-HNMDYMAETLLNYQTVHIEDII 468 Query: 133 ----KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186 K Q+ + DL+ ++ YA D L+ KL+ + L Sbjct: 469 GPKGKKQK----NMRDLAPAEVSDYACEDADITLRLKNALEPKLKEVNAESLFWEIEMPL 524 Query: 187 LMDRAELDLLG 197 + A+++L G Sbjct: 525 VRVLADMELHG 535 >gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803] gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803] Length = 996 Score = 61.9 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 28/197 (14%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-----------APNLV 67 + +AVDTET L P + +L + + G G D+ I G + L Sbjct: 396 PSEPVAVDTETTDLNPFKAQLVGIGVCWGAGLSDLAYIPVGHTDPALTQLPLEVVLEQLA 455 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 L K ++D +L V V T +A R +H L + Sbjct: 456 PWLSSPSHPKALQNAKYDRLILLRHGLVLGGVVMDTLLA-DYLRDAAAKHSLDGMAERDY 514 Query: 128 GINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 GI +K ++S ++ SD+ Y A DV L + ++LQ G Sbjct: 515 GITPTLFSDLVGKAKDGKASCFAEVP-SDQAALYCAMDVHLTRRLAIDLRQQLQASG--- 570 Query: 179 LATSCCNFLMDRAELDL 195 L+D+ EL L Sbjct: 571 ---EQLTNLLDQVELPL 584 >gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] Length = 980 Score = 61.9 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 56/189 (29%), Gaps = 32/189 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA------------- 63 A V +AVDTET L L V LS G I +A Sbjct: 386 AYEVGYVAVDTETDALNAMESGLVGVSLSCTPGKACYIPLAHVDGEGDLLGGGALLEGQI 445 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L ML D KI ++D VL GV + P T + S + Sbjct: 446 PLAEAITLLKPMLEDPAVLKIAQNMKYDWLVLKRY-GVEMAPFDDTMLLSYALDAGMGGN 504 Query: 118 GLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 G+ + + L K+Q S D L YAA D L Sbjct: 505 GMDELSQRWLNHTPIPFKEVCGSGKSQISFD--KVPLDKA-TAYAAEDADVTLRLWKILK 561 Query: 169 EKLQRLGRS 177 +L + Sbjct: 562 PRLAAEEMT 570 >gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 930 Score = 61.9 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 24/212 (11%) Query: 11 IPAECAARYVDAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---- 65 + E AA+ + DTET GL D + + + G + ++ A Sbjct: 349 LAKELAAQ--KSFCFDTETTGLDALVADIVGL-SFAIEKGKAYYVPTPDSREQALEIINI 405 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 +L D +KI ++DI +L +F T +A L T +HG+ + Sbjct: 406 FKPILEDPAIQKIGQNIKYDILLLSRYDVKVKGALFDTMLAHYLIDPDT-RHGMDVLAEN 464 Query: 126 LLG---INISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLG 175 LG ++I+K +Q + D+ E + +YA+ D L+ +F L+ Sbjct: 465 YLGYIPVSITKLIGEKGKKQG---NMRDVEIELIKEYASEDADITLQLKEKFEPLLEETA 521 Query: 176 RSDLATS-CCNFLMDRAELDLLGWE-NVDIFS 205 LA + +E++ G + +VD+ S Sbjct: 522 TLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLS 553 >gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968] gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150] gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968] gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150] Length = 894 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 16/166 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68 +A +DTET L + + L+ +G I + + L Sbjct: 315 LEKCEAFCIDTETTSLDVMMAEIVGISLAIEEGKAAYIPLTHDDGSPQLLREEVLTALNP 374 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + +KI ++D +VL G+ ++ + + T + S + + + +H + + L Sbjct: 375 ILENPTIKKIGQNLKYDYSVLRNH-GITLKGIYYDTMLESYVLNSGSGRHDMDSLALKYL 433 Query: 128 GINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167 G ++ + A L +Q+ YAA D L + Sbjct: 434 GHKTISYEEIAGKGAKQLRFDQIPVEKAGAYAAEDADITLQLHHKL 479 >gi|293334477|ref|NP_001168997.1| hypothetical protein LOC100382828 [Zea mays] gi|223974363|gb|ACN31369.1| unknown [Zea mays] Length = 98 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-- 175 GL KE+LG ++K +++S+W L+ Q +YAA D V L + + + + G Sbjct: 15 GLSGLSKEILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHEHMRRQAQFGVS 74 Query: 176 ---RSDL 179 R + Sbjct: 75 EGSRVEW 81 >gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7] gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7] Length = 860 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 48/210 (22%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAP---------NLVGM 69 D +A+DTET L P + RL + +S G I +A G +AP L Sbjct: 284 ADLVALDTETTSLDPMQARLVGLSMSVEAGVACYIPVAHRGPDHAPQLPKQEVLDRLRPW 343 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG- 128 L D K K+ H ++D VL T + + + ++ + +++ + LG Sbjct: 344 LEDSKAHKLLHNAKYDTHVLMNEGVALAGVAEDTMLQAYVLESH-KRVNMQELAERWLGR 402 Query: 129 --------------------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 I++ KA YA D L Sbjct: 403 IGTTYEDLCGKGAKQIGFDEIDVDKAS---------------HYACEDADFTLQLHQVLR 447 Query: 169 EK-LQRLGRSDLATSCCNFLMDRAELDLLG 197 K L G ++ A ++ G Sbjct: 448 PKVLADPGLENIYQLEVQASATLAIIERNG 477 >gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187] gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187] Length = 910 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 25/190 (13%) Query: 6 VHEGDIPA-ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + D+ + + + DTET L + ++ + + G + +A AP Sbjct: 315 LTDADLTRWFEKLQQAELFSFDTETNSLDYIQAQVVGLSFAVAPGDAAYLPLAHDYLGAP 374 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L D R K+ + +FD VL G+ ++ + F T + S + + Sbjct: 375 EQLDREQTLAKLKPLLEDPTRLKVGQHLKFDRNVLRNH-GIHLQGIAFDTMLESYVLNST 433 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALR 164 ++H + D K+ L Q D L+ Q++ YAA D L Sbjct: 434 ASRHNMDDLAKKYLNYT---TQTFEDVAGKGVKQLTFNQVELEKAAFYAAEDADITLRLH 490 Query: 165 LQFTEKLQRL 174 ++++ Sbjct: 491 QTLWPQVEKE 500 >gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042] Length = 928 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPSVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|308191629|sp|B3LWP6|WRNXO_DROAN RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5' exonuclease Length = 355 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 18/173 (10%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 160 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYIYQLTNLKKLPSALVALINHPKVR--L 216 Query: 80 H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F + + + + L+ + + Sbjct: 217 HGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNVICQTGGRWSLERLANFICRKAMD 276 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 K++ + S W L + QL YAA DV + L++ ++ LA Sbjct: 277 KSKKVRMSKWHVIPLDENQLMYAAIDVY----IGQVIYRDLEQREKTKLANEE 325 >gi|194743270|ref|XP_001954123.1| GF18118 [Drosophila ananassae] gi|190627160|gb|EDV42684.1| GF18118 [Drosophila ananassae] Length = 340 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 18/173 (10%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 145 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYIYQLTNLKKLPSALVALINHPKVR--L 201 Query: 80 H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F + + + + L+ + + Sbjct: 202 HGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNVICQTGGRWSLERLANFICRKAMD 261 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 K++ + S W L + QL YAA DV + L++ ++ LA Sbjct: 262 KSKKVRMSKWHVIPLDENQLMYAAIDVY----IGQVIYRDLEQREKTKLANEE 310 >gi|170109177|ref|XP_001885796.1| predicted protein [Laccaria bicolor S238N-H82] gi|164639376|gb|EDR03648.1| predicted protein [Laccaria bicolor S238N-H82] Length = 250 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 34/194 (17%) Query: 9 GDIPAECAARYVDA----IAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNA 63 D+ A+ + +AVD E + L ++ I+Q+ S V ++ + A Sbjct: 17 NDLLADLLPDAFNFRAITLAVDLEGINLCRH-GKISIIQIMSSVSEVVWLVDVTTLGSQA 75 Query: 64 PN--------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 + L +L D +K+F+ R D L+ +GV + V+ ++ R Sbjct: 76 FDHVGPYGRTLRMILEDTGIKKVFYDVRNDADALYNLYGVNLTGVYDLQLLELAVRHSLR 135 Query: 116 QH-----GLKDNLKELL------------GINI---SKAQQSSDWSADDLSDEQLQYAAS 155 +H GL ++ L G+ + S + L + Y A Sbjct: 136 RHTKFLNGLGKSITSYLTPPTEWEPIKQAGLRLFQPDFGGSYSVFEDRPLDPRIVAYCAQ 195 Query: 156 DVVHLHALRLQFTE 169 DV L L Sbjct: 196 DVTLLFELEETLRR 209 >gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] Length = 898 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 73/193 (37%), Gaps = 21/193 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAP------NLVGMLVDEKR 75 IA+D ET L P ++ + ++ +G I IA G KN P L + + + Sbjct: 327 IALDLETTSLDPFEGKIVGISIAVDEGKAFYIPIAHVGAKNIPIESVKKFLRDLF-NSGK 385 Query: 76 EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGI----- 129 H +FD+ + G+ + P F + I + L + L + +LLG Sbjct: 386 TVGGHNIKFDLKFISR-LGIEPQIPSFDSMIEAYLLNPNEKKFNLDELSLKLLGHKMISY 444 Query: 130 -NISKA---QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 ++ K + D+S + ++Y+ D + + ++L Sbjct: 445 EDLVKDTIPLFAGDFSYIPVDTA-VKYSCEDADMSLRIHNLLHPLIYSNEMNELYEKIEL 503 Query: 185 NFLMDRAELDLLG 197 ++ A L+L G Sbjct: 504 PMILVLANLELNG 516 >gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 677 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 94 LKAAELFAFDTETDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 153 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + + T +AS + + +H + Sbjct: 154 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALR 212 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q++ YAA D L + +++ + Sbjct: 213 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKS 272 Query: 180 ATSCCNF 186 Sbjct: 273 VYEEIEM 279 >gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01] gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01] Length = 960 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 24/178 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + + IA D+ET + ++ +L + + G I +A P L Sbjct: 375 LKQAELIAFDSETTSIDAQQAQLVGLSFAVKAGEAAYIPLAHSYMGVPQQLDRDAVLNAL 434 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYT-FGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 +L D + K+ + ++DI VL + V+ V F T + S + + +H + Sbjct: 435 KPILEDPAKAKVGQHAKYDINVLANASTPIMVQGVAFDTMLESYVLDSTATRHDMDSLAL 494 Query: 125 ELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 + L + + D A L+ +Q+ YAA D L + +L+ Sbjct: 495 KYLNHS---TIRFEDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQELWGRLEA 549 >gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3] gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3] Length = 995 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 46/216 (21%), Positives = 70/216 (32%), Gaps = 47/216 (21%) Query: 2 TTIRVHEGDIPAE----CAARYVDAIAVDTETLGLMPRRDRL---CIVQLSP-------- 46 TT D+ AAR +A DTET L P + L + ++ Sbjct: 371 TTAYTTIRDLAELDRWVAAARETGVVAFDTETTSLDPMQAELVGFSL-AIADNGKDASGT 429 Query: 47 ----------------GDGTVDIIRIAAGQ----KNAPNLVGMLVDEKREKIFHYGRFDI 86 GD D IR+A GQ + L +L DE KI ++D Sbjct: 430 DIRAAYVPLTHKTGSGGDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDY 489 Query: 87 AVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADD 144 ++ GV ++ T + S + HG+ + LG K S Sbjct: 490 LLMKRH-GVVMQSFDDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYKDVAGS--GKSS 546 Query: 145 LS------DEQLQYAASDVVHLHALRLQFTEKLQRL 174 ++ D+ YAA D L + +L Sbjct: 547 ITFDFVDIDKATAYAAEDADVTLRLWMVLKPRLAAE 582 >gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] Length = 908 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 17/195 (8%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKQAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKFYIEKHYIIQKFNN 395 Query: 69 ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + + K I +FD +L + P F T IA+ L T + + L ++ L Sbjct: 396 LFKSNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYL 452 Query: 128 GINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K + Q +D + ++S E Y+ D L FTEKL+ G L Sbjct: 453 MHKNIKYEDVIQKND-NFANISLEMATSYSCEDADITFRLFNIFTEKLKGDGLDKLMHEI 511 Query: 183 CCNFLMDRAELDLLG 197 F E++ G Sbjct: 512 EMPFNKVIIEMEENG 526 >gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr] gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr] Length = 908 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 17/195 (8%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKQAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKFYIEKHYIIQKFNN 395 Query: 69 ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + + K I +FD +L + P F T IA+ L T + + L ++ L Sbjct: 396 LFKSNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYL 452 Query: 128 GINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K + Q +D + ++S E Y+ D L FTEKL+ G L Sbjct: 453 MHKNIKYEDVIQKND-NFANISLEMATSYSCEDADITFRLFNIFTEKLKGDGLDKLMHEI 511 Query: 183 CCNFLMDRAELDLLG 197 F E++ G Sbjct: 512 EMPFNKVIIEMEENG 526 >gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1] gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1] Length = 893 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 20/199 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69 + + A+D ET L P + + LS I + ++ L + Sbjct: 314 LKETPSFAIDLETSSLDPFECDIAGISLSFKPKEAYYIPLHHRNAQNLDEKEVLKKLKEI 373 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D + + +FD VL G+ P F T IA+ L + L D + LG Sbjct: 374 LEDPGAKIVGQNLKFDYKVLMVK-GIEPVPPHFDTMIAAYLIEPNEKKFNLDDLALKFLG 432 Query: 129 INISKAQQSSDWSAD---------DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ Q+ +S+ L Y+ D + L + KL ++ Sbjct: 433 YKMTSYQELMSFSSPLFGFSFVDVPLEKA-ANYSCEDADITYRLYKTLSLKLHEADLENV 491 Query: 180 -ATSCCNFLMDRAELDLLG 197 + A ++L G Sbjct: 492 FYKIEMPLVSVLARMELNG 510 >gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia stuttgartiensis] Length = 887 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 22/180 (12%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--------APNLVGMLVD 72 DA A+D ET G P + + + S + + A + P + +L D Sbjct: 313 DAFAIDLETTGTDPLKAHIVGLSFSWEQKEAYYVPLMAPENTRHLTADIVLPEIRKVLED 372 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG--- 128 E ++KI ++D+ VL + ++ + F + IAS L H L D E L Sbjct: 373 ESKKKIGQNIKYDLLVLKKH-NIGLKGIYFDSMIASYLLNPAKRNHNLDDIAFEYLSYKT 431 Query: 129 ------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 I K Q + D + D+ QYA D L L++ G L Sbjct: 432 IMIAELIGSGKQQITMD--KVPV-DKVCQYACQDADITFRLAETMAPLLKKEGLWQLFQE 488 >gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43] gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43] Length = 980 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 60/210 (28%), Gaps = 40/210 (19%) Query: 9 GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT---------VDIIRIAA 58 + A CA AR +A DTET L + L L+ + +A Sbjct: 368 EQLKAWCAMARETGVVAFDTETTSLDAMQAELVGFSLAVPEAAPDTGELKVRACYAPLAH 427 Query: 59 GQKN-------------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 L +L + KI ++D+ V+ + ++ Sbjct: 428 SNGVGDLLGGGGLQPGQMPVRAALDELKALLEEPAVLKIGQNLKYDMLVMAQH-NIEIKS 486 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------ 151 T + S + HG+ + LG K S + Q+ Sbjct: 487 FDDTMLLSYVLDAGQGGHGMDALSERWLGHKTIGYKDVTGS--GKSAIPFAQVAIDKATA 544 Query: 152 YAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 YAA D L +L G + + Sbjct: 545 YAAEDAEVTLRLWHALKVRLVSEGMTSVYE 574 >gi|156549012|ref|XP_001607325.1| PREDICTED: similar to 3-5 exonuclease [Nasonia vitripennis] Length = 419 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 60/173 (34%), Gaps = 14/173 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 AI D E + + Q+ + ++ I +K +L+ +L K + + Sbjct: 241 AIGFDLEWPF-SFQTGSGKTALAQICLNEKECHLLHIYNLKKLPASLIALLSHSKVKLVG 299 Query: 80 HYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + D+ L F + + + L+ LL ISK Sbjct: 300 VNIKNDVWKLTRDFKEFPGQKVVDNNCLDCGPYANSVLNRSCRWSLERLTAYLLKKRISK 359 Query: 134 AQ--QSSDWSADDLSDEQLQYAASD--VVHLHALRLQFTEKLQRLGRSDLATS 182 + S W LSD+Q YAA+D V L L ++ E L + R + Sbjct: 360 DSSVRRSKWHIQPLSDKQKLYAATDAYVSLLLHLTIEQQEVLNQA-RLEEQEE 411 >gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 1009 Score = 61.6 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 65/194 (33%), Gaps = 32/194 (16%) Query: 22 AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNL---------VG 68 +A DTET L PR L C G G D+ I G K NL Sbjct: 410 PVAWDTETTALEPRDAELVGIGC----CWGTGEADLAYIPTGHKTGQNLDKAIVLEALRP 465 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL- 127 +L D K +FD +L VF T +AS + H L KE L Sbjct: 466 ILEDNNYPKALQNAKFDRLILRCQGIKLAGVVFDTMLASYVIDPEG-SHNLTALCKEYLE 524 Query: 128 ---------GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +SK Q +D A + Y DV L + EKL+ L Sbjct: 525 DPKLTAKSYKDLVSKEQTIAD-LAIPIVA---NYCGMDVYTTFQLVSKLREKLEELDAEK 580 Query: 179 LATSCCNFLMDRAE 192 T+ L+ + E Sbjct: 581 PLTASLEQLLIKVE 594 >gi|242775502|ref|XP_002478657.1| 3'-5' exonuclease/helicase (Wrn), putative [Talaromyces stipitatus ATCC 10500] gi|218722276|gb|EED21694.1| 3'-5' exonuclease/helicase (Wrn), putative [Talaromyces stipitatus ATCC 10500] Length = 1028 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 16/147 (10%) Query: 39 LCIVQLSPGDGT----VDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTF 93 + ++Q++ + + + R P L +L K+ + D + + Sbjct: 815 VSLIQIANEERIGLFHIALFRGNEIHDLVPPSLRQLLESTTTVKVGVSIKADCSRVRRHL 874 Query: 94 GVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLKELLGINISKA--QQSSDWSAD 143 G+ R +F +L + T Q L ++E+LG+ + K + SDW+ Sbjct: 875 GINTRSLFELSHLYKLVKYGTTQPKLVDRRTVNLAQQVEEVLGLPLKKDGDVRKSDWTK- 933 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEK 170 L Q+QYAASD L K Sbjct: 934 PLDYAQVQYAASDAYACICLHRTLEVK 960 >gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101] Length = 1020 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 69/205 (33%), Gaps = 40/205 (19%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----------QKNAPN---- 65 +A+DTET L P R L V ++ G+G D+ I G +P Sbjct: 415 AAPVALDTETTSLNPFRAELVGVGVAWGEGPADLAYIPIGHRVGSSGETPDLLSPPPAQL 474 Query: 66 --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L L + K ++D +L V T +A R +H Sbjct: 475 PLDQVLTALAPWLGSAQHPKALQNAKYDRLILLRHGLPLEGVVMDTLLA-DYLRDANAKH 533 Query: 118 GLKDNLKELLG-------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 GL+ + G + K +D+SA + L Y DV L + Sbjct: 534 GLELLAQRNFGFLPTSYSELVPKG---ADFSAVPIEQAAL-YCGMDVHVTRRLAPLLRAQ 589 Query: 171 LQRLGRSDLATSCCNFLMDRAELDL 195 L+ LG L+DR EL L Sbjct: 590 LEELG------PQLPQLLDRVELPL 608 >gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617] Length = 929 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 22/191 (11%) Query: 4 IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRD-RLCIVQLSPGDGTVDIIRIAAGQ 60 + + + D + D+ A D ET L + + + G + +A Sbjct: 331 VTILDEDTFTSWLKKLQDSELFAFDLETDSLDTLSANIIGL-SFATAPGEAAYLPVAHDY 389 Query: 61 KNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 +AP L +L D + +K+ +FD VL + ++ + F T + S Sbjct: 390 LDAPEQLDRSDVLARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIRFDTMLESYA 448 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHAL 163 + +H + L ++ + + L+ Q+ YAA D L Sbjct: 449 LNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 508 Query: 164 RLQFTEKLQRL 174 ++ +L++ Sbjct: 509 HVKMWPELEKE 519 >gi|212532415|ref|XP_002146364.1| 3'-5' exonuclease/helicase (Wrn), putative [Penicillium marneffei ATCC 18224] gi|210071728|gb|EEA25817.1| 3'-5' exonuclease/helicase (Wrn), putative [Penicillium marneffei ATCC 18224] Length = 973 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 16/152 (10%) Query: 39 LCIVQLSPGDGTVDI-IRIAAG----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 + ++Q++ + I + G P+L +L K+ + D + + Sbjct: 758 VSLIQIANEERIALFHIALFKGNEIHDLVPPSLKLLLESTDTVKVGVSIKADCSRIRRHL 817 Query: 94 GVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLKELLGINISKAQ--QSSDWSAD 143 + R F +L + + Q L ++ELLG+ + K + SDW+ Sbjct: 818 DIDTRGQFELSHLYKLVKYGSTQPKSVNRRAVNLAQQVEELLGLPLRKDSDVRKSDWTK- 876 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L Q+QYAASD L K + L Sbjct: 877 PLDYAQVQYAASDAYACICLYNTLEAKRKALN 908 >gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15] Length = 868 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 19/202 (9%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +I + ++ + A DTET L + V + G + + Sbjct: 271 SIITDQKELDQWLERLGAAELFAFDTETTSLRYMDAEIVGVSFAVKPGEAAYVPLGHDYM 330 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLT 110 AP L +L + K+ ++D VL G+ + + T + S + Sbjct: 331 GAPEQLDRDQVLDQLKPLLENPDLAKVGQNLKYDKNVLANH-GITLEGIAEDTMLESYVL 389 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALR 164 + +H + LG + + + A L+ Q+ YAA D L Sbjct: 390 NSVATRHDMDSLAMYYLGEKTTSFESIAGKGAKQLTFNQIDLEKAAPYAAEDADITLRLH 449 Query: 165 LQFTEKLQRLGRSDLATSCCNF 186 KL+ G+ + Sbjct: 450 QTLRPKLKETGKLAAVYEDIDL 471 >gi|302837233|ref|XP_002950176.1| hypothetical protein VOLCADRAFT_104579 [Volvox carteri f. nagariensis] gi|300264649|gb|EFJ48844.1| hypothetical protein VOLCADRAFT_104579 [Volvox carteri f. nagariensis] Length = 683 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%) Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG--LKDNLK 124 V +L D + K + D+ L FGV+VR ++ ++ + G L+ Sbjct: 199 VRLLSDPRVIKAGVGIQEDVRRLERDFGVQVRGAVDVRLVAQRVHPHCLAGGGSLQALSS 258 Query: 125 ELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 LLG + K+ Q S W ++ L + Q+ YAA D L + + R Sbjct: 259 ALLGRQLDKSPQRSHWGSNGQLDERQVAYAAHDAWLSRELLCELHGRYSR 308 >gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a] gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a] Length = 924 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + D I+ DTET L R RL + L+ G I + AP L Sbjct: 342 LQQADLISFDTETDALDAMRARLVGISLAVEPGRAAYIPVGHDYPGAPAQLPMQQVLDAL 401 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 +L D ++K+ +G++D+ VL GV+V+ T + S + + +H + Sbjct: 402 RSVLQDPAKKKLGQHGKYDLHVLRRH-GVQVQGYHDDTMLESFVLNSTATRHDMDSLALR 460 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + + A + Q+ +YAA D L +L Sbjct: 461 YLGYSTIKFEDVAGKGAKQIPFSQVGIDEASRYAAEDADITLRLHHALQPQLLAE 515 >gi|17554336|ref|NP_499105.1| MUTator family member (mut-7) [Caenorhabditis elegans] gi|466063|sp|P34607|MUT7_CAEEL RecName: Full=Probable exonuclease mut-7; AltName: Full=Exonuclease 3'-5' domain-containing protein 3 homolog gi|3881488|emb|CAA80137.1| C. elegans protein ZK1098.8, confirmed by transcript evidence [Caenorhabditis elegans] Length = 910 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 25/165 (15%) Query: 35 RRDRLCIVQLSPGD--GTVDIIRIAAG---QKNAPNLV-GMLVDEKREKIFHYGRFDIAV 88 ++ I+QL + VD + + + D + + R D+ Sbjct: 447 HDSKIAIIQLFFKNCVWLVDCVELEKANMADDWWQKFASRLFGDSPVKVVGFDMRNDLDA 506 Query: 89 LFY-----------------TFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + V I + L D LLG+ + Sbjct: 507 MATIPALKSSMKIEDTKNAFDLKRLAENVCD--IDMEILELPKKTFKLADLTHYLLGLEL 564 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K +Q S+W L +Q+ YAA D V + + ++ + Sbjct: 565 DKTEQCSNWQCRPLRKKQIVYAALDAVVVVETFKKILSIVEEKNK 609 >gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163] Length = 929 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 22/191 (11%) Query: 4 IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRD-RLCIVQLSPGDGTVDIIRIAAGQ 60 + + + D + D+ A D ET L + + + G + +A Sbjct: 331 VTILDEDTFTSWLKKLQDSELFAFDLETDSLDTLSANIIGL-SFATAPGEAAYLPVAHDY 389 Query: 61 KNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 +AP L +L D + +K+ +FD VL + ++ + F T + S Sbjct: 390 LDAPEQLDRSDVLARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIRFDTMLESYA 448 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHAL 163 + +H + L ++ + + L+ Q+ YAA D L Sbjct: 449 LNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 508 Query: 164 RLQFTEKLQRL 174 ++ +L++ Sbjct: 509 HVKMWPELEKE 519 >gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10] gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10] Length = 893 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 18/198 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69 + + A+D ET L P + + +S I + ++ L + Sbjct: 314 LKETPSFAIDLETSSLDPFDCDIAGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKLKEI 373 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D + + +FD VL V P F T IA+ L + L D + LG Sbjct: 374 LEDPGAKIVGQNLKFDYKVLMVKGVEPVPPHFDTMIAAYLIEPNEKKFNLDDLALKFLGY 433 Query: 130 NISKAQQSSDWSAD---------DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL- 179 ++ Q+ +S+ L Y+ D + L + KL ++ Sbjct: 434 KMTSYQELMSFSSPLFGFSFVDVPLEKA-ANYSCEDADITYRLYKTLSLKLHEADLENVF 492 Query: 180 ATSCCNFLMDRAELDLLG 197 + A ++L G Sbjct: 493 YKIEMPLVSVLARMELNG 510 >gi|223997400|ref|XP_002288373.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975481|gb|EED93809.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 782 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 23/46 (50%) Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 S L GL + LG + KA+Q SDWSA LS EQ +Y Sbjct: 712 SGLGGKGGMHLGLSRACEHYLGKQLDKAEQCSDWSARPLSTEQREY 757 >gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR] gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR] Length = 921 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 59/174 (33%), Gaps = 22/174 (12%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGML 70 D A DTET L L V L+ G I + AP+ L +L Sbjct: 340 DYFAFDTETTSLNYMEAELVGVSLAMAPGEAVYIPVGHDYMEAPDQVGRDWLLEQLKPLL 399 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 EK +K+ ++D +L + T +AS + + ++H + L Sbjct: 400 EAEKPQKVGQNLKYDSHILRRYKIRLAGILNDTMLASYVFNSVGSRHDMDTLSLHYLNH- 458 Query: 131 ISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG 175 K D A L+ Q+ YAA D + L K++ G Sbjct: 459 --KTISFEDIAGKGAKQLTFNQIALEQAGPYAAEDADITYRLHDVLWNKVKETG 510 >gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] Length = 917 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 77/199 (38%), Gaps = 29/199 (14%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM------LV 71 ++VDTET P L + S + T + + + Q + NL + ++ Sbjct: 341 VLSVDTETTSPNPAMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNLDEVREHLGPVL 400 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + K+ ++D+ VL G + + F T +AS + R +H + D KE L N Sbjct: 401 SSQVPKVGQNIKYDLIVLENH-GFVLNNIQFDTMLASYVLRPEGRRHNMDDLAKEFLNYN 459 Query: 131 I----------SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 K ++ +D + EQ+ +YAA D L F + ++ G + Sbjct: 460 TITYEDLVGTGKKKKELTD-----IDPEQVAEYAAEDADVTFRLYQIFRKSIKDSGVEPI 514 Query: 180 ATS-CCNFLMDRAELDLLG 197 + A+++ G Sbjct: 515 LREMEMPLISVLAKMEKTG 533 >gi|17537593|ref|NP_496590.1| hypothetical protein Y57A10A.13 [Caenorhabditis elegans] gi|6782292|emb|CAB55016.2| C. elegans protein Y57A10A.13, confirmed by transcript evidence [Caenorhabditis elegans] Length = 710 Score = 61.6 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 GL ++LLG + K +Q S W L QL+YAA D + L + +LG Sbjct: 628 GLSFICEKLLGRPLDKTEQCSVWDRRPLRCLQLRYAAMDAYCMLLLYEKCATIFAKLG 685 >gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8] gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8] Length = 893 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 20/199 (10%) Query: 17 ARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVG 68 R + A+D ET L P D + + +S I + ++ L Sbjct: 314 LRESPSFAIDLETSSLDPFDCDIVG-ISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKLKE 372 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L D + + +FD VL V P F T IA+ L + L D + LG Sbjct: 373 ILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPYFDTMIAAYLLEPNEKKFNLDDLALKFLG 432 Query: 129 INISKAQQSSDWSADDL---------SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ Q+ +S L ++ Y+ D + L + KL ++ Sbjct: 433 YKMTSYQELMSFSF-PLFGFSFADVPVEKAANYSCEDADITYRLYKTLSLKLHEADLENV 491 Query: 180 -ATSCCNFLMDRAELDLLG 197 + A ++L G Sbjct: 492 FYKIEMPLVNVLARMELNG 510 >gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] Length = 920 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKRE 76 +++DTET L + S + I A ++ +V + +E Sbjct: 348 KILSLDTETTSTNAMEAELVGLSFSVAPHQAFYVPIPANREQTIKIVNLFKPAYENEAIL 407 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 K+ ++D+ VL +F T IA L + +H + + L ++I Sbjct: 408 KVGQNIKYDMEVLSRYGIELKGNLFDTMIAHYLLQPEL-RHNMDYMAEVYLRYQTVHIEE 466 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCC 184 K Q+ + DL+ + +YA D L+ KL+ L Sbjct: 467 LIGPRGKGQK----NMRDLAPNDIYEYACEDADITLQLKNILEPKLKEREVDQLFYQMEM 522 Query: 185 NFLMDRAELDLLG 197 + ++++ G Sbjct: 523 PLVRVLTQMEMNG 535 >gi|291403202|ref|XP_002717830.1| PREDICTED: exonuclease 3'-5' domain containing 1 [Oryctolagus cuniculus] Length = 558 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 25/144 (17%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G++ N L +L D++ K+ H R D L + +G Sbjct: 173 KLCWLQVASNSRVYLFDIFLLGRRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 230 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGINISKAQQS---------- 137 + + VF T++A S T + L+++L L + K Sbjct: 231 IMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVA-PKHLSFLEERQKLIQE 289 Query: 138 -SD-WSADDLSDEQLQYAASDVVH 159 D W LS L+ A + + Sbjct: 290 NPDVWFTRPLSPSLLKILALEATY 313 >gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 917 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 77/199 (38%), Gaps = 29/199 (14%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM------LV 71 ++VDTET P L + S + T + + + Q + NL + ++ Sbjct: 341 VLSVDTETTSPNPAMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNLDEVREHLGPVL 400 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + K+ ++D+ VL G + + F T +AS + R +H + D KE L N Sbjct: 401 SSQVPKVGQNIKYDLIVLENH-GFVLNNIQFDTMLASYVLRPEGRRHNMDDLAKEFLNYN 459 Query: 131 I----------SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 K ++ +D + EQ+ +YAA D L F + ++ G + Sbjct: 460 TITYEDLVGTGKKKKELTD-----IDPEQVAEYAAEDADVTFRLYQIFRKSIKDSGVEPI 514 Query: 180 ATS-CCNFLMDRAELDLLG 197 + A+++ G Sbjct: 515 LREMEMPLISVLAKMEKTG 533 >gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 923 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 26/203 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A A DTET GL + V + +G + +A +AP L Sbjct: 340 LKAAKAFAFDTETDGLDYMTANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRDWVLAQL 399 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + KI +FD A + +G+ ++ + F T + S + + +H + Sbjct: 400 KPLLEDPNQAKIGQNLKFD-ASIVARYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALR 458 Query: 126 LL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGR 176 L I+ + L+ Q+ YAA D L K++ + Sbjct: 459 YLEHKNISFEEIAGK---GKKQLTFNQIDLAQAGPYAAEDADITLRLHNALYPKVEADEK 515 Query: 177 SDLATS--CCNFLMDRAELDLLG 197 + + ++ G Sbjct: 516 LKHVFETIEMPLVPVLSRMERTG 538 >gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48] gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Pseudomonas entomophila L48] Length = 922 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET GL ++ + + + + +A + AP L Sbjct: 337 LRQAPLFAFDTETTGLDAQQASIVGLSFAVEPNEAAYVPLAHDYEGAPAQLDREAVLLAL 396 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLK 124 +L D + KI ++DI +L + + T + S + + +H + + Sbjct: 397 KPLLEDPAKGKIGQNAKYDINILANGSPAILMRGVAYDTMLESYVLDSTATRHDMDSLAQ 456 Query: 125 ELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172 + L + + A L+ Q+ YAA D L +L Sbjct: 457 KYLDHTTIGFEDIAGKGAKQLTFNQIPLEKAGPYAAEDADVTLRLHHALQARLA 510 >gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A] gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A] Length = 955 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 31/172 (18%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRI-------AAGQKNAPNLVGMLVD 72 IA DTET GL P+ +L + G+ + I I + +K L +L + Sbjct: 366 PIAWDTETTGLNPQTAKLVGISCCWGEEVNNIAYIPIEHKEGEQLSKEKVLEKLRPILEN 425 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKE------ 125 + K+F +FD VL G+++ VF T +AS + H L K+ Sbjct: 426 KCYPKVFQNAKFDRLVLLNQ-GIQLNGVVFDTMLASYVINP-DKSHKLSSLCKQYLTNIS 483 Query: 126 ---LLGINISKAQQSSDWSADDLSDEQL-QYAASDV--VHLH--ALRLQFTE 169 L + I+K Q +D L Q+ Y D L L+ + E Sbjct: 484 SQDYLELKINKQQTIAD-----LDITQVANYCGMDAYSTFLLVKPLKKRLAE 530 >gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont] Length = 929 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D A D ET L + + + G + +A +AP L Sbjct: 346 LQSADVFAFDLETDSLDTLSANIVGIAFAVAPGKAAYLPVAHDYLDAPPQLDRAAVLKQL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D K K+ ++D VL + + + F T + S + +H + Sbjct: 406 KPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIKFDTMLESYCLNSVGGKHDMDSLAAR 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 L ++ + L+ Q+ YAA D L LQ KL++ Sbjct: 465 WLNHKTVTFEEIAGKGKYQLTFNQIALEQAAHYAAEDADVTLQLHLQMWPKLEQE 519 >gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] Length = 893 Score = 61.2 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 18/198 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69 + V + A+D ET L P + + +S T I + L + Sbjct: 314 LKEVPSFALDLETSSLDPFNCEIVGISVSFKPKTAYYIPLHHRNAQNLDETLVLSKLKEI 373 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D + + ++D VL V P F T IA+ L + L+D + LG Sbjct: 374 LEDPSSKIVGQNLKYDYKVLMVKGISPVYPHFDTMIAAYLLEPNEKKFNLEDLSLKFLGY 433 Query: 130 NISKAQQSSDWSADDL---------SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL- 179 ++ Q+ +S+ L D+ Y+ D + L + KL ++ Sbjct: 434 KMTSYQELMSFSS-PLFGFSFADVPVDKAANYSCEDADITYRLYKILSMKLHEAELENVF 492 Query: 180 ATSCCNFLMDRAELDLLG 197 + A ++L G Sbjct: 493 YRIEMPLVNVLARMELNG 510 >gi|327259620|ref|XP_003214634.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Anolis carolinensis] Length = 437 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 25/147 (17%) Query: 35 RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFY 91 R +L +Q++ G + N L +L D+ K+ H R D L + Sbjct: 110 RYGKLSWLQVATRSQVFLFDIFLLGPRVFKNGLQIILEDQHILKVIHDCRWLSD--CLSH 167 Query: 92 TFGVRVRPVFCTKIASRL-----TRTYTNQ--HGLKDNLKELLGINISKAQQSSD----- 139 +G+ + VF T++A + T + L++ L E LG++ K D Sbjct: 168 QYGIELTNVFDTQVADVMQFSVETGGFLPLRISNLQECLIEYLGMS-RKDVSFMDLRQRE 226 Query: 140 -------WSADDLSDEQLQYAASDVVH 159 W LS L A + V+ Sbjct: 227 IERNPDVWFMRPLSPALLNVLALETVY 253 >gi|321455674|gb|EFX66801.1| hypothetical protein DAPPUDRAFT_331718 [Daphnia pulex] Length = 224 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 59/195 (30%), Gaps = 50/195 (25%) Query: 16 AARYVDAIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLV-- 67 A + VD E + ++Q++ D + + + + +++ Sbjct: 10 ALGKSTVVGVDIE-------WPPFGTLAKATVLQIATHDKIFLLDIFSLREDKSCSVINS 62 Query: 68 -----GMLVDEKREKIFHYGRFDIAVLFYTF------------GVRVRPVF---CTKIAS 107 + + K+ + + D+ VL + + ++ ++ TK S Sbjct: 63 QQLIGDLFGNRHILKLGYGLKEDLHVLSRSLPGIGDVSKSIVNWIDIKNLWSNIETKYPS 122 Query: 108 RLTRTYTNQHGLKDNLKELLGINI------------SKAQQSSDWSADDLSDEQLQYAAS 155 L N D + + K +Q SDW L Q YAA Sbjct: 123 FLPPAVLND---GDTCSQETHKGLSGLVKLLLGLPLDKKEQFSDWQKRPLRTSQFIYAAL 179 Query: 156 DVVHLHALRLQFTEK 170 D L + ++ Sbjct: 180 DAFCLLEVYDYLQKR 194 >gi|312210218|emb|CBX90305.1| hypothetical protein [Leptosphaeria maculans] Length = 799 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 38/205 (18%) Query: 4 IRVHEG-DIPAECAARYVD--AIAVDTETLGLMPR------RDRLCIVQLSPGDGTVDI- 53 I + D+ A R++D + D E P + + ++QL+ D Sbjct: 229 IHYCKSKDVAERVAKRFLDQKVLGFDIE---WKPFGIPSSIKQNVSLIQLACEDRIALFH 285 Query: 54 IRIAAG----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 I + G + P+L +L K+ + D + L G++ R VF L Sbjct: 286 ISLFEGTAVEELMPPSLKAVLESPDIYKVGVAIKGDFSRLARYLGIQARGVFELSRLHNL 345 Query: 110 TRTYT--------NQHGLKDNLKELLGINISKAQ------------QSSDWSADDLSDEQ 149 + Y GL + + L + + K + + SDWS L Q Sbjct: 346 VQYYEADPKQVNNRLVGLAAQVHQHLQLPLYKGEPLDDDPETSSSVRESDWSL-PLGFSQ 404 Query: 150 LQYAASDVVHLHALRLQFTEKLQRL 174 + YAA+D L K +L Sbjct: 405 IHYAAADAYAGFRLYDALERKRAQL 429 >gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] Length = 931 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 21/169 (12%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGMLVDE 73 +A DTET L PR +L + +G + + I + +L + D Sbjct: 362 GIVAWDTETTSLDPRDAQLVGIGCCWSEGDIAYLPIGHRQGSNLDWELVKQSLQPLWEDP 421 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 R K ++D+++ G+R++ + F +AS + H L D L + Sbjct: 422 NRPKSLQNCKYDLSIF-RAHGIRLQGIQFDPMLASYVLDPEA-SHNLADLAATHLNLPTT 479 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + K Q +D +S +Y +D + L TEKLQ+ Sbjct: 480 SYKKLLGKEQSIAD---IPISKV-AEYCGTDAYCAYRLVPILTEKLQKT 524 >gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ] gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ] Length = 908 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + IA D+ET L ++ L + + I +A P+ L Sbjct: 325 LKQAGLIAFDSETTSLDAQQAELVGLSFAVAPLEAAYIPLAHSYMGVPDQLDRDAVLAAL 384 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D R K+ + ++D+ VL + G+ VR V + T + S + + +H + + Sbjct: 385 RPILEDPARAKVGQHAKYDMNVLAHY-GIEVRGVAYDTMLESYVLDSTATRHDMDSLALK 443 Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 LG + D A L+ +Q+ YAA D L +KL+ Sbjct: 444 YLGQG---TIRFEDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQCLWQKLEA 497 >gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197] gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617] gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197] gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617] Length = 928 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T++ S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTRLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518 >gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU] gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Acinetobacter baumannii ACICU] gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2] gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715] gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] Length = 923 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 18/173 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ + +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQVLAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F + +AS + +HG+ D + Sbjct: 406 PILENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517 >gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21] gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21] Length = 928 Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 68/205 (33%), Gaps = 23/205 (11%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL-- 66 ++ A A++ + DTET G L + S G + +A QK A L Sbjct: 345 NELLALLASQ--KSFCFDTETTGTDANCCELVGLSFSVEKGQAWYVPASADQKEAHALVQ 402 Query: 67 --VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + + KI +FDI VL + +F T +A L T +HG+ + Sbjct: 403 QFKPVFENPAIGKIGQNLKFDILVLSWYDVKVAGELFDTMLAHYLIDPET-RHGMDVLSE 461 Query: 125 ELLGINISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR 173 LG QL YAA D L+ F L + Sbjct: 462 NYLGYTPVSITT----LIGPKGKGQLNMRDVDPKTVSDYAAEDADITLQLKEIFEPMLIK 517 Query: 174 LGRSDLATS-CCNFLMDRAELDLLG 197 + LA + +++ +G Sbjct: 518 VEADKLAHEVEFPLVPVLVDMERVG 542 >gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17] gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17] Length = 926 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 17/201 (8%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +I ++ ++ + + A DTET L + V + + Sbjct: 328 SIITNQAELDEWVERLKASELFAFDTETTSLRYMAAEVVGVSFAVQPFEAAYVPFCHDYM 387 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111 AP L +L +K+ ++D VL T + S + Sbjct: 388 GAPEQLDRDTVLAQLKPLLESPDHKKVGQNLKYDKNVLANHDICLEGIAEDTMVQSYVLN 447 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165 + +++H + LG + + + A L+ QL+ YAA D L Sbjct: 448 SVSSRHNMDALALHYLGEETTTFESLAGKGAKQLTFNQLELDKAGPYAAEDADITLRLHQ 507 Query: 166 QFTEKLQRLGRSDLATSCCNF 186 +L G+ + Sbjct: 508 ALRPQLAATGKLQSVYEDIDL 528 >gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58] gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58] Length = 928 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 43/193 (22%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCI------VQLSPGDGTVDIIRIAAGQKN------ 62 AA+ +AVDTET L C+ + L+ I + G + Sbjct: 338 AAAQAEGVVAVDTETDMLD------CVSCGLVGISLAVAPNAACYIPVGHGGTDMFAERP 391 Query: 63 --------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY- 113 L +L D+ K+ ++D+ VL G+ V P T + S Sbjct: 392 AQLDKALVLAKLKPLLEDDAVLKVGQNLKYDMTVLRRH-GIEVVPYDDTIVMSFDLEAGK 450 Query: 114 -TNQHGLKDNLKELLGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHA 162 + HG+ + ++ LG D ++ L +YAA D Sbjct: 451 SLSGHGMDEAARQHLGHE---CISFKDVVGTGKNQISFAEVPLPRA-TEYAAEDADVTLR 506 Query: 163 LRLQFTEKLQRLG 175 L +F ++ G Sbjct: 507 LWKRFKARIANEG 519 >gi|291614659|ref|YP_003524816.1| 3'-5' exonuclease [Sideroxydans lithotrophicus ES-1] gi|291584771|gb|ADE12429.1| 3'-5' exonuclease [Sideroxydans lithotrophicus ES-1] Length = 220 Score = 61.2 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 30/164 (18%) Query: 21 DAIAVDTET--------LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 + DTE+ + P +VQ + D + ++ + P LV +L Sbjct: 45 GIVGFDTESRPTFVTGDVSEGPH-----VVQFALHD-KAYLFQVHR-EDGLPFLVELLQS 97 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI- 131 ++ K+ + D +F GVR V T N G + + + + Sbjct: 98 DEVIKVGFGLKSDSGHIFNKLGVRFGAVVD-------LNTVFNMKGYRKEMGARAAVGLV 150 Query: 132 -------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 SK ++DWS L+ +Q+ YAA+D + Sbjct: 151 FNQRFAKSKKITTTDWSQPRLTHQQILYAANDAYAALKVLEALN 194 >gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586] gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586] Length = 929 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 20/178 (11%) Query: 14 ECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------ 65 + AR + DTET GL L + L+ G + + +AP Sbjct: 342 DWIARINAAGLFSFDTETDGLDTLTANLVGISLAIKPGEAAYLPLGHDYLDAPTQLDRDT 401 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120 L +L +E KI +FD V+ G+ +R + F T + S + + +H + Sbjct: 402 VLAQLKPLLENEAIGKIGQNLKFDKGVMARY-GIDLRGIVFDTMLESYVLDSVAGRHDMD 460 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172 + L ++ + + L+ Q+ YAA D L KL+ Sbjct: 461 SLSERYLQHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRLHETLWAKLE 518 >gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341] gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341] Length = 938 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D A DTET L L V + +G I +A +AP L Sbjct: 355 LQQADLFAFDTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQL 414 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 415 KPLLEDENKAKVGQNLKYDASVIARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 473 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + + +++ + + Sbjct: 474 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQ 533 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 534 VYREIEMPLVPVLSRIERTG 553 >gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] Length = 923 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 18/173 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ I +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQVLAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F + +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517 >gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9] gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9] Length = 908 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 22/199 (11%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + + +A+DTET L + RL + LS G I +A + N + Sbjct: 329 KQANLVALDTETNSLDQLKTRLVGISLSTDIGKAWYIPVAHQVELGCNQLMKAEVLEAMR 388 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 L E++ KI ++D+ V G+ ++ + T + + + T + GL+ + Sbjct: 389 SWLESEQKTKILQNAKYDMHVFANE-GIVLKGIKHDTMVLAYVIDT-NQRVGLEALSLKY 446 Query: 127 LG-INIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR-LGRSD 178 L +S K ++ + L QYA D L + KL+ G Sbjct: 447 LNRKGLSYEEICGKGAKAITFDYVPLDQA-TQYACEDADFTFHLLTELLPKLEGFEGLKF 505 Query: 179 LATSCCNFLMDRAELDLLG 197 + L +++ +G Sbjct: 506 IYDLEMQVLQVLFDMERVG 524 >gi|308455848|ref|XP_003090418.1| hypothetical protein CRE_16505 [Caenorhabditis remanei] gi|308264027|gb|EFP07980.1| hypothetical protein CRE_16505 [Caenorhabditis remanei] Length = 591 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 20/135 (14%) Query: 53 IIRIAAGQ--KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 I +A+ G+L EK K+ H R ++L + + V +R VF T++A L Sbjct: 365 IFDLASSDVIILESGFKGILESEKVVKVIHDARRVASLLAHKYAVHMRNVFDTQVAHSLL 424 Query: 111 RTYTNQHGLKDN-------LKE--------LLGINISKAQQSSDWSADDLSDE-QLQYAA 154 + L + L+ L + K QS +W +++E QL Sbjct: 425 QHDKFGKSLHEMRPISFINLQRVYYPQSIMLSDVTPRKMSQSPNWGVRPITEEFQLT-IV 483 Query: 155 SDVVHLH-ALRLQFT 168 + L AL + Sbjct: 484 EEAHCLLSALYQALS 498 >gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 39/203 (19%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------- 56 + + D+ A A+D ET L P L + L+ + + Sbjct: 312 LTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQ 371 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 ++ L L ++++ H+G++D VL R F T IA+ L N Sbjct: 372 LDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVLERAGFPRPHIDFDTMIAAYLLGE--NA 429 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSD------EQL-----------QYAASDVVH 159 GLK+ LG W +++++ +QL QYA +DV Sbjct: 430 VGLKELAFTKLG-----------WEMEEITELIGRGKKQLTMDRAEIARVTQYACADVEA 478 Query: 160 LHALRLQFTEKLQRLGRSDLATS 182 + L +L+ + L T Sbjct: 479 TYRLVEVLRPQLEAHNQLRLFTE 501 >gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] Length = 905 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 65/206 (31%), Gaps = 30/206 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----------APNL 66 + +A+DTET L + RL + L+ G I +A + L Sbjct: 326 LQNASLVALDTETTSLDQMQARLVGLSLAVEPGVACYIPVAHRGPDGATQLPKAEVLARL 385 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 L D R K+ H+ ++D V G+ + + T + + + ++ GL D + Sbjct: 386 KPWLEDASRAKLLHHAKYDAHVFANE-GIALAGITDDTMLQAYVLESH-RGVGLNDLAQR 443 Query: 126 LLGINISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR- 173 LG + D +Q+ YAA D L + Sbjct: 444 YLGRS---GISYEDLCGK--GAKQIGFDEVAVDKAGHYAAEDADFTLQLHHVLRPMVAAN 498 Query: 174 LGRSDLATSCCNFLMDRAELDLLGWE 199 G + ++ G + Sbjct: 499 EGLDRIYQLEIKVSAVLTTIERNGVK 524 >gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2] gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2] Length = 928 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYVPVAHDYLDAPDQIARDRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE K+ ++D +L G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDENAHKVGQNLKYDRGILANY-GIELRGITFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518 >gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] Length = 917 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 39/203 (19%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------- 56 + + D+ A A+D ET L P L + L+ + + Sbjct: 312 LTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQ 371 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 ++ L L ++++ H+G++D VL R F T IA+ L N Sbjct: 372 LDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVLERAGFPRPHIDFDTMIAAYLLGE--NA 429 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSD------EQL-----------QYAASDVVH 159 GLK+ LG W +++++ +QL QYA +DV Sbjct: 430 VGLKELAFTKLG-----------WEMEEITELIGRGKKQLTMDRAEIARVTQYACADVEA 478 Query: 160 LHALRLQFTEKLQRLGRSDLATS 182 + L +L+ + L T Sbjct: 479 TYRLVEVLRPQLEAHNQLRLFTE 501 >gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 923 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 18/173 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ I +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQVLAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F + +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517 >gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 39/203 (19%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------- 56 + + D+ A A+D ET L P L + L+ + + Sbjct: 312 LTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQ 371 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 ++ L L ++++ H+G++D VL R F T IA+ L N Sbjct: 372 LDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVLERAGFPRPHIDFDTMIAAYLLGE--NA 429 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSD------EQL-----------QYAASDVVH 159 GLK+ LG W +++++ +QL QYA +DV Sbjct: 430 VGLKELAFTKLG-----------WEMEEITELIGRGKKQLTMDRAEIARVTQYACADVEA 478 Query: 160 LHALRLQFTEKLQRLGRSDLATS 182 + L +L+ + L T Sbjct: 479 TYRLVEVLRPQLEAHNQLRLFTE 501 >gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5] gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5] Length = 595 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 23 IAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 +AVDTET GL D +VQ D ++ + G + V + + + + Sbjct: 38 LAVDTETTGLDIYSDTFECRLVQFGTQDE-AWVVPVELGDVFIED-VRIAIGALKRMVLQ 95 Query: 81 YGRFDIAVLFYTFGVRVRPVF----CTKIASRLTRTYT-NQHGLKDNLKELLGINISKAQ 135 FD+ VL FG+ + ++ T+I ++L G +L+EL+ IS+ Q Sbjct: 96 NASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVDPRPFEAGGFGHSLEELIAKFISEDQ 155 >gi|255085362|ref|XP_002505112.1| predicted protein [Micromonas sp. RCC299] gi|226520381|gb|ACO66370.1| predicted protein [Micromonas sp. RCC299] Length = 514 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 19/130 (14%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---------- 93 LSP + +A K P L +L D + D+ + F Sbjct: 150 LSPPTPNRPYVPGSAVTKFPPLLARLLHDPNVLPVGQGVAEDLRQIARCFPEVTNPGVPK 209 Query: 94 -----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE--LLGINISKAQQSSDWSADDLS 146 G R +AS + GL + ++ K+ Q SDWS L+ Sbjct: 210 GGAEPGCRRGAFVD--LASIVDFYDVPASGLGRLAQHCGFSDVSKPKSVQVSDWSRTPLT 267 Query: 147 DEQLQYAASD 156 D Q++YAA D Sbjct: 268 DAQVRYAAQD 277 >gi|114653643|ref|XP_001140882.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 506 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 18/142 (12%) Query: 44 LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G ++R+ G+ L+ +L D K+ D + L +G+ VR Sbjct: 1 MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60 Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQL----- 150 + + R N LK + +L + K+ + S+W A+ L+++Q+ Sbjct: 61 CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQIPLISD 120 Query: 151 -----QYAASDVVHLHALRLQF 167 YAA D AL L Sbjct: 121 FSLQVIYAARDAQISVALFLHL 142 >gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] Length = 1041 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 45/215 (20%) Query: 16 AARYVDAIAVDTETLGLMPRR-DRLCI-VQLSPGD------GTVDIIRIAAGQKNAPN-- 65 + R A DTET R+ D + + ++PG+ G + P Sbjct: 449 SLRDAGHFAFDTETTSEDQRKADLVGLSFAMAPGEAYYIPVGHTTTVDGQEPGTQLPLSH 508 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120 L + D K H ++DIAV+ G++V + F + +A+ L GLK Sbjct: 509 VLVQLKPIFEDASIGKYMHNAKYDIAVMLRY-GIQVEGLSFDSMLAAYLIEPGRRGLGLK 567 Query: 121 DNLKELLGINISKAQQSSDWSADDLSD-----------EQL------QYAASDVVHLHAL 163 + + L I ++ +++ Q+ YA SD L Sbjct: 568 EQAFQRLSILMT-----------PITELIGSGSKIISMAQVPIRRAADYAGSDADMTLRL 616 Query: 164 RLQFTEKLQRLGRSDL-ATSCCNFLMDRAELDLLG 197 + + LQ+ DL + +++L G Sbjct: 617 VVPLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYG 651 >gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 930 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 58/177 (32%), Gaps = 24/177 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + IA DTET L L V +G + +A +AP L Sbjct: 347 LQKAQLIAFDTETTSLNYMDAELVGVSFCIEEGEAAYVPVAHDYPDAPTQLSREFVLDAL 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L K+ + ++D VL + + + F T + S + + +H + Sbjct: 407 KPILESSNIIKVGQHIKYDKNVLANY-DITLNGIGFDTMLESYVLNSTAQRHDMDSLALA 465 Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 LG K D A L+ Q+ YAA D L KL+ Sbjct: 466 YLGH---KTIHFEDIAGKGAKQLTFNQIALEEAGPYAAEDADITLRLHNTIWAKLKE 519 >gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] Length = 933 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 12/125 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET GL L + + G + +A +AP L Sbjct: 350 LKKANVFAFDTETDGLDTLSANLIGLSFAIAPGEAAYLPVAHDYLDAPAQLDRASVLERL 409 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ +FD+ VL G+ +R + + T + S + + +H + + Sbjct: 410 KLLLEDEKVLKVGQNLKFDMGVLARY-GINLRGIAYDTMLESYVLDSVGGRHDMDNLADR 468 Query: 126 LLGIN 130 LG Sbjct: 469 YLGHK 473 >gi|319792549|ref|YP_004154189.1| 3'-5' exonuclease [Variovorax paradoxus EPS] gi|315595012|gb|ADU36078.1| 3'-5' exonuclease [Variovorax paradoxus EPS] Length = 206 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 +VQ S D + ++ + N P + ++ + +K+ D+ ++ + V Sbjct: 77 VVQFSTRD-RAWLFQLHRTECN-PVVAALIASTELKKVGFGLSTDLTLIRNRLNIEPGAV 134 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAASDV 157 + I + R Y G+K + + K+ +S+W+ L++ Q++YAA+D Sbjct: 135 YD--IDNEFRRRGYRKSVGVKTAVALVFDRRFMKSRKATTSNWANKQLTESQIRYAANDA 192 Query: 158 VHLHALRLQFTE 169 + Sbjct: 193 YASIRVYDALFA 204 >gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] Length = 923 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 18/173 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ + +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQILAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F + +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517 >gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100] gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100] Length = 879 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 27/201 (13%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-REKIF 79 +A DTET GL + ++ + + +A + M +K EKI+ Sbjct: 317 SIVAFDTETTGLDTKEAKIVGFSFCSHESEAFYVPLAHDYLGVCKQISMQAAKKGIEKIY 376 Query: 80 ------HYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 H ++D ++ F + + T I + L + + + + K + Sbjct: 377 QSTVIGHNLKYDFEIIKNNFNLLPPKNYADTMILAWL-KEPSLRVNMDVLAKRIFDYETL 435 Query: 131 -----ISKAQQSS--DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 + K + + D ++ +YAA D L F + L++ +LA Sbjct: 436 HFEDLVKKGESFAGVD------VEKACKYAAEDAYITLRFYLYFLKNLEKS-LLELAQKS 488 Query: 183 CCNFLMDRAELDLLGWENVDI 203 F+ ++ G + +DI Sbjct: 489 EFEFIKVLIMMENNGIK-LDI 508 >gi|308482748|ref|XP_003103577.1| hypothetical protein CRE_28761 [Caenorhabditis remanei] gi|308259998|gb|EFP03951.1| hypothetical protein CRE_28761 [Caenorhabditis remanei] Length = 591 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 20/135 (14%) Query: 53 IIRIAAGQ--KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 I +A+ G+L EK K+ H R ++L + + V +R VF T++A L Sbjct: 365 IFDLASSDVIILESGFKGILESEKVVKVIHDARRVASLLAHKYAVHMRNVFDTQVAHSLL 424 Query: 111 RTYTNQHGLKDN-------LKE--------LLGINISKAQQSSDWSADDLSDE-QLQYAA 154 + L + L+ L + K QS +W +++E QL Sbjct: 425 QHDKFGKSLHEMRPISFINLQRVYYPQSIMLSDVTPRKMSQSPNWGVRPITEEFQLT-IV 483 Query: 155 SDVVHLH-ALRLQFT 168 + L AL + Sbjct: 484 EEAHCLLSALYQALS 498 >gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 879 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 18/173 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ I +A +NAP + Sbjct: 302 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQVLAQIK 361 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F + +AS + +HG+ D + Sbjct: 362 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 420 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 421 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 473 >gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii SDF] gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii] Length = 923 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 18/173 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ + +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQVLAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F + +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517 >gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] Length = 934 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 16/174 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L P + L + ++ G + P L Sbjct: 352 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGVPVQLDRTQALAQL 411 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 412 APLLTDPAVRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 471 Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + A + Q+ +YAA D L +L Sbjct: 472 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLASE 525 >gi|323345482|ref|ZP_08085705.1| 3'-5' exonuclease domain protein [Prevotella oralis ATCC 33269] gi|323093596|gb|EFZ36174.1| 3'-5' exonuclease domain protein [Prevotella oralis ATCC 33269] Length = 212 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 30/192 (15%) Query: 4 IRVHEGDIPAECAARY---VDAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVD 52 I V D A+ A Y D + VDTET R ++ ++Q++ D Sbjct: 26 IVVILNDTDAKEAVDYLLSSDILGVDTET------RPTFKKGQIHKVSLLQVATKDICFL 79 Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASR 108 G + ++ +L ++ I +H DI L + I Sbjct: 80 FRLNMIGIND--DVKRLLENKSVPMIGLSWHD---DILALHKRRAFNPGYFIDLQNIVGE 134 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 L L+ + ISK QQ ++W AD L+D+Q +YAA+D L + Sbjct: 135 L---GIKDLSLQKLYANIFHQKISKRQQLTNWDADVLNDKQKEYAATDAWACVMLYNEIM 191 Query: 169 EKLQRLGRSDLA 180 L++ G +L Sbjct: 192 H-LKQSGDYELV 202 >gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56] Length = 452 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 64/202 (31%), Gaps = 38/202 (18%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA-------- 57 AR +A DTET L + L ++ D D + +A Sbjct: 248 ADARDTGLVAFDTETTSLDAMQAELVGFSMAIADNVADPTGTKIRAAYVPLAHKNGVGDL 307 Query: 58 ----------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 + P L +L D K+ ++D +L +G+ + T + S Sbjct: 308 LGGGLAENQVPMRDALPRLKALLEDAAVLKVAQNLKYD-YLLMKRYGIETKSFDDTMLIS 366 Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159 + T HG+ ++ LG K S +++ D YAA D Sbjct: 367 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GRANVTFDLVDIDRATHYAAEDADV 424 Query: 160 LHALRLQFTEKLQRLGRSDLAT 181 L L +L G + + Sbjct: 425 TLRLWLVLKPRLAAAGLTSVYE 446 >gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92] gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92] Length = 922 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L V + G + +A AP + Sbjct: 340 LSTAELFAFDTETTSLNYMEAELVGVSFAIEPGKAAYVPVAHDYMGAPEQITRETLLEKM 399 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L +K+ + ++D+ VL G+ + + F T + S + + +H + Sbjct: 400 KPLLESSDHKKVGQHLKYDMNVLARY-GIELTGIEFDTMLESYVLNSTATRHDMDSLADR 458 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 LG+ K + + L+ Q++ YAA D L +L + Sbjct: 459 YLGLKTIKFEDIAGKGKKQLTFNQIELEQAAPYAAEDADITLRLHQAINAQLSK 512 >gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT] gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT] Length = 951 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 65/194 (33%), Gaps = 38/194 (19%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---------------- 60 + D IAVDTET L P R L + + + I +A Q Sbjct: 350 LQQADLIAVDTETDALDPMRANLVGISFALTNSEACYIPLAHKQAVKEMTQTDLFTESEQ 409 Query: 61 ---------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105 L +L + +K+ ++D+ + F T + Sbjct: 410 NAEQFELVKNQLNKETCLAQLKPLLENPSIQKVGQNIKYDLTIFANHHIQLNGVCFDTML 469 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVH 159 S + + T +H + + LG + + + + ++ +++ +YAA D Sbjct: 470 QSYVLDS-TGRHNMGALSERYLGHQVIEFESIAGKGKKQVTFDKIAIAQATEYAAEDADI 528 Query: 160 LHALRLQFTEKLQR 173 L ++LQ+ Sbjct: 529 TMKLHQVLWQELQQ 542 >gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900] Length = 923 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 18/173 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ + +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQVLAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F + +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517 >gi|298705698|emb|CBJ28936.1| hypothetical protein Esi_0124_0050 [Ectocarpus siliculosus] Length = 955 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 14/152 (9%) Query: 11 IPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-- 65 + C + + + +D E +LG + VQLS DGT ++ G K + Sbjct: 412 LIDGCQLQG-NVLGLDCEWEPSLGGTTPNP-VSTVQLSLPDGTAYCFQLQRGNKKTTSSN 469 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L +L + K+ D L +G+ V + +R T L Sbjct: 470 FPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETPSRSLAG 529 Query: 122 NLKELLGINISKA--QQSSDWSADDLSDEQLQ 151 LLG + K + S WS+ LSD+Q++ Sbjct: 530 MASSLLGRQLPKDPVIRLSRWSS-PLSDDQVR 560 >gi|288927674|ref|ZP_06421521.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330508|gb|EFC69092.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 317 str. F0108] Length = 209 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 21/174 (12%) Query: 21 DAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 D + VDTET P + + ++Q+S D G P ++ +L ++ Sbjct: 48 DILGVDTET---RPSFKKGETHMVSLLQVSTSDVCFLFRLNHIGIT--PAILRLLENKAV 102 Query: 76 EKI---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINI 131 + H D+ L + L L+ L I Sbjct: 103 PMVGLSLHD---DMLSLHKRVAFTPGFFIDLQ---DLVGELGIEDLSLQKLYANLFHQKI 156 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 SK Q+ ++W +D L+D+Q YAA D L + +L++ G +L + + Sbjct: 157 SKRQRLTNWDSDVLNDKQKAYAALDAWACINLYKEIL-RLKQSGDYELVINEQD 209 >gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] Length = 920 Score = 60.8 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 23/192 (11%) Query: 23 IAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75 +++DTET L C + + + I +K A + D Sbjct: 350 LSLDTETTSTDAIEAELVGLC---FAVEEHKAFYVAIPNDRKQALQYVNIFKSVYEDPSI 406 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG------- 128 KI ++D VL +F T +A + + +H + + LL Sbjct: 407 LKIGQNIKYDYEVLKNYGVTLQGKMFDTMLAHYVLQPEL-RHNMDYMAETLLNYKTIHIE 465 Query: 129 --INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCN 185 I Q S D ++ +Y A D LR KL+ + L Sbjct: 466 ELIGAPGKHQKS--MRDIAPEDAYEYGAEDADITLQLRNVLEPKLKEVAMEALFWDIETP 523 Query: 186 FLMDRAELDLLG 197 + A+++L G Sbjct: 524 LIPVLADMELNG 535 >gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 20/182 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLV 71 +I DTET G + L + S G + + + Sbjct: 358 LLSTQKSICFDTETTGTDANQCELVGLSFSIKKGEAWYVPVPVNCDEIQPIVDEFKPIFE 417 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG--- 128 + KI +FD+ VL Y +F T +A + T +H + + LG Sbjct: 418 NPAIGKIGQNIKFDMLVLKYYNVTMQGELFDTMLAHYIIDPDT-RHNMDILAENYLGYSP 476 Query: 129 INIS-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 ++I+ K Q + D+ E++ YAA D L+ F KLQ++G + LA Sbjct: 477 VSITTLIGAKGKGQGT----MRDVEIEKIKDYAAEDADVTLQLKEVFEPKLQQVGGTKLA 532 Query: 181 TS 182 T Sbjct: 533 TD 534 >gi|195444614|ref|XP_002069948.1| GK11793 [Drosophila willistoni] gi|194166033|gb|EDW80934.1| GK11793 [Drosophila willistoni] Length = 598 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 8/159 (5%) Query: 18 RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + D E T+G RR + ++QLS G + R+ ++ +L +L D+ Sbjct: 75 QRFQVLGFDCEWITVGG-SRRP-VALLQLSSQYGLCALFRLCCMKQIPKDLRELLEDDAI 132 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ + D L + +GV V + + + GL L + K Sbjct: 133 VKVGVAPQADAMKLSHDYGVGVASTLDLRFLAVMAGHKAE--GLGKLSHTHLNFVLDKNW 190 Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + S+W A L + QL YAA+D + A+ + L+ Sbjct: 191 RLACSNWEAKQLEEVQLNYAANDALAAVAIFQKLCRDLE 229 >gi|123470108|ref|XP_001318262.1| HRDC domain containing protein [Trichomonas vaginalis G3] gi|121901016|gb|EAY06039.1| HRDC domain containing protein [Trichomonas vaginalis G3] Length = 443 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 24/145 (16%) Query: 28 ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA 87 E + R C++ L + II + + N L +L + K+F FD Sbjct: 186 EIHRIRTYRPYPCLLTLYSPTYGLFIIDLMKLRFNLDPLKEILQNPDYVKVF----FDPN 241 Query: 88 V---LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS-----SD 139 + L + G+ + P L+ +Y + + + +++ Q+S D Sbjct: 242 IYDLLVESCGIFISPSID------LSLSYP-----GKTIDQCIK-ELNEEQESLQNIVVD 289 Query: 140 WSADDLSDEQLQYAASDVVHLHALR 164 W L+ A V+HL L Sbjct: 290 WRIRPLTKFMESTAIEGVLHLPHLA 314 >gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132] gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132] Length = 933 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 68/188 (36%), Gaps = 19/188 (10%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--- 64 ++ A+ + I DTET + ++ + + I + + A Sbjct: 350 RAELLEYLLAQ--EEICFDTETTDIDALDAQIVGLSFAYRPREAFYIPFSPKFEEAKAVL 407 Query: 65 -NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDN 122 + +E K+ ++D+ +L GV V+ ++ T +A + +HG+ Sbjct: 408 IEFKPLFENENIRKVAQNIKYDLTILATY-GVEVKGEIYDTMLAHYILEP-DQRHGMDYL 465 Query: 123 LKELLGIN-------ISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL 174 + L I K ++ + L EQ+ +YAA D L+ ++++ Sbjct: 466 AETYLSYKPIPISDLIGKGKKQLNMRDVPL--EQIKEYAAEDADITLQLKHVLDAQIKKT 523 Query: 175 GRSDLATS 182 + L Sbjct: 524 DQGRLLQE 531 >gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058] gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] Length = 923 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 18/173 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ + +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQVLAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F + +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517 >gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] Length = 911 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 24/178 (13%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 + A DTET L + +L + + G + IA AP L + Sbjct: 331 AELFAFDTETTSLEYMKAQLVGMSFAVKAGEAAYLPIAHDYPGAPEQLSLEFVMQKLGPI 390 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L DE + K+ ++D +VL G + + F T + S + + +H + + LG Sbjct: 391 LADENKAKVGQNLKYDKSVLANA-GYELNGIKFDTMLESYVFNSVGTRHDMDSLALKYLG 449 Query: 129 INISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177 K D L+ Q++ YAA D L KL+ + Sbjct: 450 H---KNISFEDIAGKGKKQLTFNQIELEKAAPYAAEDADITLRLHQVLWPKLEADEKL 504 >gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] Length = 928 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YA D L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYATEDADVTLQLHLKMWPDLQK 518 >gi|311244960|ref|XP_003121634.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Sus scrofa] Length = 566 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ + G + N L +L D++ K+ H R D L + +G Sbjct: 172 KLCWLQVATNSRVYLFDILLLGSRAFNNGLQMVLEDKRILKVIHDCRWLSD--CLSHQYG 229 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQSSD-- 139 + + VF T++A S T + L+++L L I + + Q+ Sbjct: 230 ILLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKIAPKYLSFLEERQKRIQEN 289 Query: 140 ---WSADDLSDEQLQYAASDVVH 159 W LS L+ A + + Sbjct: 290 PELWFTRPLSPSLLKILALEATY 312 >gi|219120899|ref|XP_002185681.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582530|gb|ACI65151.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 894 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 27/135 (20%) Query: 41 IVQLSPGDGTVDIIRIAAGQKN-----APNLVGMLVDEKREKIFHYGRF-DIAVLFYTFG 94 +VQL+ + + +I++A P L +L DE K G D+ +L Sbjct: 149 LVQLATPNAS-LVIQLARNNGRHSRACIPILEAVLADEHIIK---AGVQVDLDMLELHQK 204 Query: 95 VRVRPVFCTKIA-SRLTRTYT--------NQHGLKDNLKELLGINISKAQQ--SSDWSAD 143 T A SRL + GLK + +LG+N+ K++ S+WS Sbjct: 205 WH------TIEARSRLDLGGLLICEDDANRRPGLKRLAESVLGVNLPKSKSLAKSNWSQV 258 Query: 144 DLSDEQLQYAASDVV 158 LS Q+ Y+A D Sbjct: 259 PLSPAQIAYSARDAW 273 >gi|157820709|ref|NP_001101231.1| exonuclease 3'-5' domain-containing protein 1 [Rattus norvegicus] gi|149023013|gb|EDL79907.1| exonuclease 3'-5' domain-like 1 (predicted) [Rattus norvegicus] Length = 562 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 172 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 229 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGINIS---------KAQQS- 137 + + VF T++A S T + L++ L L + K Q Sbjct: 230 IMLSNVFDTQVADVLQFSMETGGFLPNCISTLQECLIRHLKVAPKYLLFLEERQKQIQEN 289 Query: 138 -SDWSADDLSDEQLQYAASDVVH 159 W L L+ A + + Sbjct: 290 PEVWLTRPLPPSLLKILALETAY 312 >gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus] Length = 923 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 18/172 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+D ET L R + ++ + +A +NAP + Sbjct: 346 QNADHFAIDIETTSLDYRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQLNREQILAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F T +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDTMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLK 516 >gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] Length = 916 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 19/193 (9%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E + A + A DTET L + L + + G + I AP Sbjct: 321 LTEEQLDKWLAQLQSAPLFAFDTETTSLDYMQADLVGMSFAVEAGKAAYLPIGHDYLGAP 380 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L DE+R K+ ++D +VL G+ + + F T + S + + Sbjct: 381 EQLSKEMVFAKLGPLLADEQRPKVGQNLKYDKSVLARA-GLELNGIKFDTMLESYVLNSV 439 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQF 167 +H + + LG ++ + + L+ Q++ YAA D L Sbjct: 440 GTRHDMDSLALKYLGHKNISFEEIAGKGKNQLTFNQIELDKAAPYAAEDADITLRLHQML 499 Query: 168 TEKLQRLGRSDLA 180 KL+ + + Sbjct: 500 WPKLEADEKLKVV 512 >gi|303284465|ref|XP_003061523.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456853|gb|EEH54153.1| predicted protein [Micromonas pusilla CCMP1545] Length = 161 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 48/140 (34%), Gaps = 14/140 (10%) Query: 41 IVQLS-----PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 +VQL P ++R+ P L D +K+ R D + F Sbjct: 23 LVQLCCEGKRPAKPVCILLRLCRAGGMTPALRAFFEDPSIKKVGVQARGDAHKITRDFAF 82 Query: 96 RVRPVFCTKIASRLTRT------YTNQHGLKDNLKELLGINISKAQQS--SDWSADDLSD 147 V V K A RT L ++ LG + K + SDW A LS+ Sbjct: 83 HVAGVIELK-AHAAERTSSDAAKGPRAFSLAALVEWTLGRALPKTNSARISDWEAPVLSE 141 Query: 148 EQLQYAASDVVHLHALRLQF 167 EQ +YAA D + Sbjct: 142 EQQRYAALDAFAGLKVYQAL 161 >gi|166367637|ref|YP_001659910.1| 3'-5' exonuclease [Microcystis aeruginosa NIES-843] gi|166090010|dbj|BAG04718.1| 3'-5' exonuclease [Microcystis aeruginosa NIES-843] Length = 135 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 11/115 (9%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGD-----GTVDIIRIAAGQKNAPNLV-GMLVD 72 + + +DTE + RL ++Q+ V I+ + + +++ Sbjct: 19 HFPILWLDTEVADYDSKTPRLSLIQILADSTDLTGERVTILDVLDRPDLTDYFITKIMLV 78 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHGLKDNLK 124 ++ EK+FH +D L +V+ + CT ++ Y + LK ++ Sbjct: 79 DRIEKVFHNASYDCKFLG--GKSQVKKITCTLELAKKVPYYIAPLANYQLKTVVE 131 >gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] Length = 998 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 66/199 (33%), Gaps = 43/199 (21%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRL---CIVQLSP------------------------G 47 AAR +A DTET L P + L + ++ G Sbjct: 391 AAAREAGVVAFDTETTSLDPMQAELVGFSL-AIADNGKDASGTDIRAAYVPLTHKTGSGG 449 Query: 48 DGTVDIIRIAAGQ----KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 D D I++A GQ + L +L DE K+ ++D ++ GV +R T Sbjct: 450 DLFSDGIKLAEGQAPFAEALERLKDLLEDEAVLKVAQNLKYDYLLMKRH-GVVMRSFDDT 508 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAAS 155 + S + HG+ + LG K S ++ D+ YAA Sbjct: 509 MLISYVLEAGKTTHGMDTLSERWLGHTPIAYKDVTGS--GKSSITFDFVNIDKATAYAAE 566 Query: 156 DVVHLHALRLQFTEKLQRL 174 D L + +L Sbjct: 567 DADVTLRLWMALKPRLVSE 585 >gi|302803390|ref|XP_002983448.1| hypothetical protein SELMODRAFT_118353 [Selaginella moellendorffii] gi|300148691|gb|EFJ15349.1| hypothetical protein SELMODRAFT_118353 [Selaginella moellendorffii] Length = 200 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 54/157 (34%), Gaps = 17/157 (10%) Query: 22 AIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + DTE R ++QL + I P L +L +E K Sbjct: 42 VLGFDTEWKPSFERGAVP-GRTAVLQLCLDSSRCYVFHIFHSGI-PPQLQKLLEEETIWK 99 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT---YTNQHGLKDNLKELLGINISK- 133 D++ L +GV V S L + L +EL I K Sbjct: 100 AGIGISGDVSKLKLDYGVTVTGSVD---LSALANQKLKRSQSWSLSSLAEELTCKVIDKP 156 Query: 134 -AQQSSDWSADDLSDEQLQYAASDV---VHLHALRLQ 166 + DW LS QL YAA+D +HL+ +R + Sbjct: 157 TDIRCGDWELQPLSPAQLSYAATDAFASLHLYQVRNE 193 >gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591] gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591] Length = 928 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 20/178 (11%) Query: 14 ECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------- 64 + AR + DTET GL L + L+ G + + +AP Sbjct: 341 DWVARINTAGLFSFDTETDGLDTLTANLVGISLAIKPGEAAYLPLGHDYLDAPMQLDRDK 400 Query: 65 ---NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120 L +L DE KI +FD V+ G+ +R + F T + S + + +H + Sbjct: 401 VLAVLKPLLEDESVAKIGQNLKFDKGVMARY-GIDLRGIAFDTMLESYVLDSVAGRHDMD 459 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172 L ++ + + L+ Q+ YAA D L KL+ Sbjct: 460 SLSDRYLQHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRLHETLWAKLE 517 >gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] Length = 931 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D A DTET L L + + +G + +A +AP L Sbjct: 348 LKAADVFAFDTETDSLDYMVANLVGLSFATQEGVAAYVPVAHDYLDAPQQLDRDWVLEQL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL + ++ + T +AS + + +H + Sbjct: 408 KPILEDDTQAKVGQNLKYDASVLARY-DIELKGIKHDTMLASYVYNSVGGKHDMDSLALR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + L+ Q++ YAA D L + E + + + Sbjct: 467 FLQHSCISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKA 526 Query: 180 ATSCCNF 186 Sbjct: 527 IYQDIEV 533 >gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] Length = 923 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 18/172 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ + +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQLDREQILAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F + +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLK 516 >gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002] gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002] Length = 973 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 64/178 (35%), Gaps = 41/178 (23%) Query: 22 AIAVDTETLGLMPR----------RDRLCIVQLSPGDGTVDIIRIAAGQKNA-------P 64 +A DTET GL PR R G + I IA N Sbjct: 381 PVAWDTETTGLDPREVDLVGIGCCWGR--------DPGNIAYIPIAHHNGNQLEKTQIFQ 432 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L EK K+F +FD A+ + VF T +AS + +H L D Sbjct: 433 ALKPILETEKYPKVFQNAKFDRAIFAHQGISLAGVVFDTMLASYVLHPEM-KHNLTDLSL 491 Query: 125 ELLGINISKAQQSSDWSADDLSDEQL----------QYAASDVVHLHALRLQFTEKLQ 172 LG I+K+ + D L+ +Q +Y DV + + + +L+ Sbjct: 492 RYLGNIIAKSYK--DLG---LTKKQTIADLEISVAAEYCGLDVYTTYLVCQKLKVELK 544 >gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024] gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024] Length = 923 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 18/172 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ + +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQILVQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F + +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLK 516 >gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100] gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris] Length = 927 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L + L + ++ G + AP L Sbjct: 345 LRAAGQFAFDTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQALAQL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 405 APLLTDPAVRKLGQHGKYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRY 464 Query: 127 LGINIS-------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 LG + K + ++ L D +YAA D L ++L Sbjct: 465 LGYDTVKYEDICGKGAKQIKFAQVSLEDA-TRYAAEDADITLRLHQVLGKRLAAE 518 >gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter calcoaceticus PHEA-2] Length = 923 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 18/172 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ + +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQILAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D + G+ ++ F + +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLK 516 >gi|194206775|ref|XP_001503529.2| PREDICTED: similar to exonuclease 3-5 domain-like 1 [Equus caballus] Length = 562 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 165 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILKVIHDCRWLSD--CLSHQYG 222 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137 + + VF T++A SR T + L+++L L I + + Q+ Sbjct: 223 ILLNNVFDTQVADVFQFSRETGGFLPNCISTLQESLIRHLKIAPKYLSFLEERQKRIREN 282 Query: 138 -SDWSADDLSDEQLQYAASDVVH 159 W LS L+ A + + Sbjct: 283 PEVWFTRPLSPSLLKILALEATY 305 >gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 942 Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 72/202 (35%), Gaps = 32/202 (15%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR-----------IAAGQKNAPNLVGM 69 I++DTET P L + S G I + + +++ L M Sbjct: 365 KPISIDTETTSQDPMMAELLGISFSEEPGVAYYIAFSHSESIYSHLLPSAEESLKILKPM 424 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D +KI ++D+ VL G+ ++ + F T +AS L +H + D + L Sbjct: 425 LEDSNWKKIGQNIKYDLLVLKNY-GIELKGIYFDTMLASYLLNPGERRHNMDDMAVDYLN 483 Query: 129 ---------INISKAQQS---SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + K +Q+ D D+ +YA D L + K+ Sbjct: 484 YKTITYEELVGTGKKKQNLYDID------PDKVSEYACEDADITLQLHNVLSPKMDENIH 537 Query: 177 SDLATS-CCNFLMDRAELDLLG 197 L L+ A+++ G Sbjct: 538 KKLFYEMEMPVLLTLADMEFEG 559 >gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] Length = 908 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 17/195 (8%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------QKNAPNLVG 68 + + I++DTET L RL + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDIYTARLIGISISFKEFEGYYIPIEAKGKIYIEKHYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + + K I +FD +L + P F T IA+ L T + + L ++ L Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYL 452 Query: 128 GINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K + Q +D + ++S E Y++ D L FT+KL+ G L Sbjct: 453 MHKNIKYEDVIQKND-NFANISLEMATSYSSEDADITFRLFNIFTKKLKEDGLDKLMHEV 511 Query: 183 CCNFLMDRAELDLLG 197 F E++ G Sbjct: 512 EMPFNNVIIEMEENG 526 >gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo] gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo] Length = 889 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 17/195 (8%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------QKNAPNLVG 68 + + I++DTET L RL + +S + I I A Sbjct: 317 SLKKAKYISIDTETSSLDIYTARLIGISISFKEFEGYYIPIEAKGKIYIEKHYIIQKFNN 376 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + + K I +FD +L + P F T IA+ L T + + L ++ L Sbjct: 377 LFESNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYL 433 Query: 128 GINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182 K + Q +D + ++S E Y++ D L FT+KL+ G L Sbjct: 434 MHKNIKYEDVIQKND-NFANISLEMATSYSSEDADITFRLFNIFTKKLKEDGLDKLMHEV 492 Query: 183 CCNFLMDRAELDLLG 197 F E++ G Sbjct: 493 EMPFNNVIIEMEENG 507 >gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771] Length = 564 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 12/146 (8%) Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P L +L DE K+ ++D +L +G+ R T + S + T HG+ Sbjct: 31 DALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETRSFDDTMLISYVLDAGTGAHGMD 89 Query: 121 DNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQ 172 ++ LG K S +++ D YAA D L L +L Sbjct: 90 PLSEKFLGHTPIPYKDVAGS--GKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLA 147 Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197 G + + L A ++ G Sbjct: 148 AAGLTSVYERLERPLLPVLARMEARG 173 >gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14] gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14] Length = 923 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 26/203 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A A DTET GL + V + +G + +A +AP L Sbjct: 340 LKAAKAFAFDTETDGLDYMTANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRDWVLEQL 399 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D K+ KI +FD A + +G+ ++ + F T + S + + +H + Sbjct: 400 KPLLEDPKQAKIGQNLKFD-ASIVARYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALR 458 Query: 126 LL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGR 176 L I+ + L+ Q+ YAA D L K++ + Sbjct: 459 YLEHKNISFEEVAGK---GKKQLTFNQIDLEQAGPYAAEDADITLRLHNTLYPKVEADDK 515 Query: 177 SDLATS--CCNFLMDRAELDLLG 197 + + + ++ G Sbjct: 516 LNHVFETIEMPLVPVLSRMERTG 538 >gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] Length = 927 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L + L + ++ G + AP L Sbjct: 345 LRAAGQFAFDTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQALAQL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 405 APLLTDPAVRKLGQHGKYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRY 464 Query: 127 LGINIS-------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 LG + K + ++ L D +YAA D L ++L Sbjct: 465 LGYDTVKYEDICGKGAKQIKFAQVSLEDA-TRYAAEDADITLRLHQVLGKRLAAE 518 >gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] Length = 936 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 7/119 (5%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVD 72 + ++DTET L L + + G I + +A L +L + Sbjct: 359 LEKQSSFSIDTETTSLNTFEAELVGISICWKPGEAYFIHFTDKELSAKTFPGKLQDVLEN 418 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 +K ++DI VL VR+ PV F T +AS + +H L D K+ L Sbjct: 419 PDIKKTGQNLKYDILVLKNHH-VRLAPVGFDTMLASYVINPE-EKHNLDDLAKKHLNHR 475 >gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205] gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205] Length = 923 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 21/193 (10%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76 + +++DTET L + + + + I A ++ A + + + Sbjct: 351 NILSLDTETTSTTAIDAELVGLSFAVKEKEAFYVAIPANREEALKIVNIFKPLYENPEIL 410 Query: 77 KIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRT--YTNQHGLKDNLKELLGINIS- 132 K+ ++D VL G+ ++ +F T +A L + Y N L + I+I Sbjct: 411 KVGQNIKYDYEVLINY-GIEIQGKMFDTMLAHYLIQPELYHNMDYLAEVFLNYQTIHIEE 469 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K Q+ S DL+ + +YAA D L+ KL+ + DL + Sbjct: 470 LIGPKGKNQK----SMRDLAPSDIYEYAAEDADITLRLKNVLESKLKEIDCEDLFWNVEM 525 Query: 185 NFLMDRAELDLLG 197 + A +++ G Sbjct: 526 PLVPVLAHMEMTG 538 >gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] Length = 928 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 22/189 (11%) Query: 5 RVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + D + + +A A DTET L + L + +G + +A + Sbjct: 331 TILTQDALDDWLKKLHNAALFAFDTETTSLNYMQAELVGMSFCIEEGEAAYLPLAHDYAD 390 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 AP +L D+ + K+ + ++D VL + ++ + + T + S + Sbjct: 391 APEQLDRDSVLALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAYDTMLESYVLD 449 Query: 112 TYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 + +H + + LG++ K + ++ L YAA D L Sbjct: 450 SVATRHDMDSLAQHYLGLSTVHFEDIAGKGAKQLTFNQIPLEQA-AHYAAEDADITLRLH 508 Query: 165 LQFTEKLQR 173 +KL + Sbjct: 509 NHIWKKLNQ 517 >gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae] Length = 936 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 22/202 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + A DTET L L + + G + + +AP + Sbjct: 352 LQSAKCFAFDTETDSLDTLSAHLIGLSFAIEKGKGAYLPLGHNYLDAPQQLPLDEVLAAI 411 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNL 123 +LVD+ +KI +FD V+ + ++ + F T + S + +H + Sbjct: 412 KPILVDKNIQKIGQNLKFDYGVMANY-DIELKNMAFDTMLESYVLNSVAGLGRHDMDSLA 470 Query: 124 KELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRS 177 + L ++ + + L+ Q+ YAA D L +L+ + Sbjct: 471 QRHLNHKTITFEEIAGKGKNQLTFNQIPLEQASTYAAEDADVTLLLHQTLWPQLESEPKL 530 Query: 178 D--LATSCCNFLMDRAELDLLG 197 + A ++ +G Sbjct: 531 KGIFQQIEMPLVPVLARMERVG 552 >gi|242075030|ref|XP_002447451.1| hypothetical protein SORBIDRAFT_06g001220 [Sorghum bicolor] gi|241938634|gb|EES11779.1| hypothetical protein SORBIDRAFT_06g001220 [Sorghum bicolor] Length = 311 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 9/154 (5%) Query: 22 AIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 ++ D E PRR ++ ++QL ++ IA P L +L D K Sbjct: 141 SLGFDLE-WRPFPRRGEPPCKVAVMQLCMEKTLCYVLHIAHSGV-PPILKTLLEDSSSIK 198 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ- 135 + D + + V V+P+ + +A+ T + L + + + K Sbjct: 199 VGICIDNDARKMLNDYDVCVQPLMDLSTLANVKLATPPKRWSLASLTEMITCKELPKPSN 258 Query: 136 -QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + +W D L+ +QLQYAA+D L Sbjct: 259 IRMGNWEVDVLTKQQLQYAATDAYISWYLYEALQ 292 >gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] Length = 928 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 18/189 (9%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI + + D A DTET L + L + S +G + +A + Sbjct: 331 TILTQDALEKWFAKLQQADLFAFDTETTSLNYMQAELVGMSFSIEEGDAAYLPLAHDYVD 390 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 AP +L D+ + K+ + ++D VL + ++ + + T + S + Sbjct: 391 APQQLDRSAVLALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAYDTMLESYVLN 449 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + LG++ + + A L+ Q+ QYAA D L Sbjct: 450 SVATRHDMDSLAQYYLGLSTVHFEDIAGKGAKQLTFNQIPLDQAAQYAAEDADITLRLHN 509 Query: 166 QFTEKLQRL 174 +KL + Sbjct: 510 HIWQKLHQT 518 >gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96] gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96] Length = 930 Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 24/186 (12%) Query: 13 AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65 + AR A A DTET L + ++ V + G + +A P+ Sbjct: 342 DDWLARLEKAELFAFDTETTSLDYSKAQIVGVSFAVTPGKAAYVPLAHDYPGVPDQLDRS 401 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119 L +L + ++ K+ ++D VL G+ +R + T + S + + +H + Sbjct: 402 EILEKLRPLLENPRKAKLGQNLKYDTHVLANH-GIALRGIAHDTMLESYVLNSTATKHNM 460 Query: 120 KDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKL 171 D KE LG+ K + ++S +Q YAA D L KL Sbjct: 461 DDLAKEYLGVETIHYEDVAGKGAKQI--GFQEVSIDQAAPYAAEDADITLQLHQVLNAKL 518 Query: 172 QRLGRS 177 + R Sbjct: 519 AQHPRL 524 >gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1] gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1] Length = 919 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 18/173 (10%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVG 68 + +A DTET L + L V ++ G I +A ++AP L Sbjct: 340 QAELVAFDTETTSLNYMQAELVGVSVAIEAGKAAYIPVAHDYEDAPEQLDRDWVLEQLKP 399 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 L DE + K+ + ++D VL + + +R + F T + S + + +H + + L Sbjct: 400 WLEDEGKAKVGQHLKYDANVL-NNYDITLRGIKFDTMLESYVFNSTGTRHDMDSLSSKFL 458 Query: 128 GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 G + K + + A + Q+ YAA D L KL++ Sbjct: 459 GHSTVKFEDIAGKGAKQKTFNQIDLEQAAFYAAEDADITLRLHQAILPKLEKT 511 >gi|156391169|ref|XP_001635641.1| predicted protein [Nematostella vectensis] gi|156222737|gb|EDO43578.1| predicted protein [Nematostella vectensis] Length = 204 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 12/128 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM----LVDEKREKIFHYGRFDIAVLFYTF 93 + ++QL + T + ++++ + L DE K+ D+ + + Sbjct: 64 KTSLIQLCSSESTCYLFQLSSMALLLKKPSQLNYTILEDETIVKVGVGINSDVDKISREY 123 Query: 94 GVRVRPVFCTKIASRLTRTYTNQH---GLKDNLKELLGINISKAQ--QSSDWSADDLSDE 148 V R + S L T H L L ++K + S+ A L+ E Sbjct: 124 DVYPRGIVD---LSALANTKLKSHENWSLSGLTMHLFKQQLNKDPAIRCSNCEAIPLTRE 180 Query: 149 QLQYAASD 156 Q YAA D Sbjct: 181 QQLYAAMD 188 >gi|74000167|ref|XP_535437.2| PREDICTED: similar to CG4051-PA [Canis familiaris] Length = 569 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 25/144 (17%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 171 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILKVIHDCRWLSD--CLSHQYG 228 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGINISKAQQS---------- 137 + + VF T++A S T + LK++L L + K Sbjct: 229 ILLNNVFDTQVADVLQFSMETGGFLPNCISSLKESLIRHLKMA-PKYLSFLEERQKLIQE 287 Query: 138 --SDWSADDLSDEQLQYAASDVVH 159 W LS L+ A + + Sbjct: 288 NPEVWFTRPLSPSLLKILALEATY 311 >gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] Length = 940 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 28/203 (13%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + A DTET L P L V S + + +A AP L Sbjct: 353 KNKGLFAFDTETTSLHPEDCTLVGVSFSVEEKEAFYLPLAHAYLGAPVQLAKDDVFAKLA 412 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKEL 126 + D K +KI H +FD+ VL++ V+ V+ T + + L + L + ++ Sbjct: 413 PVFADPKIKKIGHNVKFDLLVLYFAGLSAVKGVYADTMLMAHLLDS-VQSCALDNLAEKY 471 Query: 127 LGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L K + SD + + Y+ D L K++ G+ Sbjct: 472 LSY---KTIKYSDVAGSGSKSVTFDNVPVDIA-CAYSGEDSEVALRLFNVLLPKIKDEGK 527 Query: 177 SD--LATSCCNFLMDRAELDLLG 197 ++ L L +++ +G Sbjct: 528 ANDILFNLEMPCLSVLFDMERVG 550 >gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 645 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 40/187 (21%) Query: 17 ARYVDAIAVDTETL-GLMPRRD-RLCI---------VQLSPGDGTVDIIRIAA------- 58 IA D ET RRD + + V S +GT + + Sbjct: 16 LDKAGLIAFDFETAPREKYRRDEKAALDAHKADIAGVSFSVSEGTAVYVPLKHKTGKNAG 75 Query: 59 -GQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLT----- 110 K L + + K KI H F+ A+ Y GV ++ P + T IA+ L Sbjct: 76 SPDKIMQWLSENVFANRKVVKIAHNLSFE-AMFLYALGVVLQPPCYDT-IAAALMTLKSN 133 Query: 111 ---RTYTNQHGLKDNLKELLGINISKAQQSSDWSAD------DLSDEQLQYAASDVVHLH 161 RT + GLK +EL G+++ + + + +E ++YA +D + Sbjct: 134 TAFRTLADS-GLKTLTQELFGVDLPSFETVT--AGRYFDELDPQDEETVRYACADSDYTL 190 Query: 162 ALRLQFT 168 L F Sbjct: 191 RLYHLFN 197 >gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] Length = 883 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 13/168 (7%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAGQKNAPNLVGMLVDE 73 + I DTET P + L + G I + +K L + + Sbjct: 310 LQKEKEICFDTETTHWHPLKAELVGIGFCIKQGAAWYIPMNGKLGLEKALKKLAPLFENS 369 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 + H+ ++D+ +L G+ + + F T +AS + + QH L E G Sbjct: 370 RIGFYAHHLKYDLHILKNY-GISLANISFDTILASYILTPHLRQHSLDALTLEHFGKTKI 428 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 I K + + ++ Y DV + + L+ F +L++ Sbjct: 429 PTSDLIGKGKNQITMLEVPI-EKVCAYCCEDVDYTYRLKQIFASELKK 475 >gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] Length = 940 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 33/182 (18%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------- 65 A IA+DTET L + LC + S G + + GQ + Sbjct: 347 AEEHGIIAIDTETDNLEGMKANLCGISFSIVPGKAYYVPVGHGQTDLSLDDPEHSQQMSE 406 Query: 66 ------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHG 118 L +L+D K+ ++D+ +L + V T + S + + HG Sbjct: 407 ATALDILKPVLLDPSILKVGQNLKYDLLIL-RERDIDVVGYDDTMLLSYAADCGFASLHG 465 Query: 119 LKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + + K LG K + D + D + YAA D L Sbjct: 466 MDELSKRHLGHEPIPYKEIVGTGKKQKTFGD---VPIKDAYI-YAAEDADVTLRLHTILK 521 Query: 169 EK 170 + Sbjct: 522 SR 523 >gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] Length = 936 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 12/114 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69 R A DTE L L + L+ + + L + Sbjct: 353 LRAAPGFAFDTECTSLQAVGSHLVGIALAIAPNDAYYVPVGHEEGEQLPLADVVAALGPL 412 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122 D K H +FD VL G++V + F T IA+ + + GLKD Sbjct: 413 FADPNIPKFAHNAKFDAEVL-AGVGIQVAGLAFDTMIAAAML---GKRQGLKDL 462 >gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34] gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34] Length = 923 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 26/203 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + +A A DTET GL + V + +G + +A +AP L Sbjct: 340 LKAAEAFAFDTETDGLDYMTANVVGVSFAIEEGKAAYVPLAHDYLDAPAQLDRDWVLEQL 399 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D K+ KI +FD A + +G+ ++ + F T + S + + +H + Sbjct: 400 KPLLEDPKQAKIGQNLKFD-ASIVARYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALR 458 Query: 126 LL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGR 176 L I+ + L+ Q+ YAA D L K++ + Sbjct: 459 YLEHKNISFEEVAGK---GKKQLTFNQIDLEQAGPYAAEDADITLRLHNTLYPKVEADDK 515 Query: 177 SDLATS--CCNFLMDRAELDLLG 197 + + ++ G Sbjct: 516 LKHVFENIEMPLVPVLSRMERTG 538 >gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] Length = 933 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 18/177 (10%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------- 65 + + A DTET L L + + I + +AP+ Sbjct: 347 ASLKAAKIFAFDTETDSLDVLTTNLVGLSFATAPSVAAYIPVGHDYLDAPDQLDRDDVLA 406 Query: 66 -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123 L +L D K+ ++D V+ G+ ++ + F T + S + +H + Sbjct: 407 KLKPVLEDANLLKVGQNLKYDQGVMARY-GIELQGIAFDTMLESYDLDSVAGRHDMDSLA 465 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 + L ++ + L+ Q+ YAA D L L+ +L++ Sbjct: 466 ERHLNHKTITFEEIAGKGKSQLTFNQIALEQATPYAAEDADVTLQLHLKLWPQLEKE 522 >gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603] gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603] Length = 938 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L V + +G I +A +AP L Sbjct: 355 LQQAELFAFDTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDREWVITQL 414 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 415 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 473 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + + +++ + + Sbjct: 474 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQ 533 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 534 VYREIEMPLVPVLSRIERTG 553 >gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135] gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135] Length = 919 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 21/196 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------PNLVGM 69 + + +A+DTET L ++ + +S + I I +K Sbjct: 347 LKQANYVAIDTETTSLNVHEAQIIGISVSFKEFESYYIPIETKEKKTIEKAYIIQKFNEF 406 Query: 70 LVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + + I +FD +L + F V P F T IA+ + T + L ++ L Sbjct: 407 FKAQPKL-IGQNYKFDYKILKKHEFNVIP-PYFDTMIAAYVIDPNT-KVSLDFLAEKYL- 462 Query: 129 INISKAQQ-----SSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + K + + + + D+ E + YAA D L FT+KL+ +L T Sbjct: 463 --MHKNIRYEEIVAQNGTLKDIPLEMVSNYAAEDADITFRLFKIFTKKLKEDNLENLMTD 520 Query: 183 -CCNFLMDRAELDLLG 197 F E++ G Sbjct: 521 IEMPFSNVITEMEENG 536 >gi|39968737|ref|XP_365759.1| hypothetical protein MGG_02461 [Magnaporthe oryzae 70-15] gi|145013929|gb|EDJ98570.1| hypothetical protein MGG_02461 [Magnaporthe oryzae 70-15] Length = 430 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 15/150 (10%) Query: 39 LCIVQLSPGDGTVD---IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 +C+VQL+ + AP+L +L + K+ + D L G+ Sbjct: 78 VCLVQLASPSRIALFHLALYPKDDSLVAPSLKLLLENSDISKVGVNIKADCTRLRTWLGI 137 Query: 96 RVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKAQ--QSSDWSADD 144 + VF +L + + L + ++ + G+++ K Q +SSDWS Sbjct: 138 DSKGVFELSHLYKLVKYSASGETHLINRRAVALAEQVEAVFGLSMFKGQDVRSSDWSK-P 196 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L EQ+ Y++SD + ++ + L Sbjct: 197 LKMEQIIYSSSDAYAGPQIYNVLEQQREAL 226 >gi|156363455|ref|XP_001626059.1| predicted protein [Nematostella vectensis] gi|156212921|gb|EDO33959.1| predicted protein [Nematostella vectensis] Length = 179 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 114 TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 T+ GLK K +LGI + K + S+W L+ +Q+ YAA D L ++ ++L Sbjct: 2 TDGTGLKKLAKTILGIELDKPKNISLSNWELFPLTYKQVSYAALDAWVSFKLFVELKQRL 61 Query: 172 QRLG 175 + G Sbjct: 62 HKSG 65 >gi|322797653|gb|EFZ19662.1| hypothetical protein SINV_03012 [Solenopsis invicta] Length = 255 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 14/170 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 I D E DR +VQ+ D ++ + + +K V +L K + + Sbjct: 80 PIGFDLEWPF-SFQTGSDRTALVQICLEDSVCYLLYVYSLRKLPAAFVELLCHPKVKLVG 138 Query: 80 HYGRFDIAVLFYTFGVRVR------PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + D+ L F + + + L+ L+ + K Sbjct: 139 VNIKNDVWKLGRDFKEFPAQKVVENNCLDCGTYANRVLKRSCRWSLEKLTAYLVYLYFIK 198 Query: 134 --AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK---LQRLGRSD 178 + + S W LSD Q YAA+D L K +++ ++D Sbjct: 199 DPSVRMSKWHIQPLSDAQKSYAATDAYVSLLLYTTLEAKAIAIEKENQND 248 >gi|302784546|ref|XP_002974045.1| hypothetical protein SELMODRAFT_100501 [Selaginella moellendorffii] gi|300158377|gb|EFJ25000.1| hypothetical protein SELMODRAFT_100501 [Selaginella moellendorffii] Length = 200 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 51/151 (33%), Gaps = 11/151 (7%) Query: 22 AIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + DTE R ++QL + I P L +L +E K Sbjct: 42 VLGFDTEWKPSFERGAVP-GRTAVLQLCLDSSRCYVFHIFHSGI-PPQLQKLLEEETISK 99 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK--AQ 135 D++ L +GV V + + L +EL I K Sbjct: 100 AGIGISGDVSKLKLDYGVTVTGSVDLSAMANQKLKRSQSWSLSSLAEELTCKVIDKPTDI 159 Query: 136 QSSDWSADDLSDEQLQYAASDV---VHLHAL 163 + DW LS QL YAA+D +HL+ + Sbjct: 160 RCGDWELQPLSPAQLSYAATDAFASLHLYQV 190 >gi|294942282|ref|XP_002783467.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983] gi|239895922|gb|EER15263.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983] Length = 500 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 11/162 (6%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI---AVLFYTFGV 95 + +VQL+ D +IR + +L D K+ K+ FD+ A L +TF + Sbjct: 79 ISLVQLATED-LALLIRTNTHHVLPQWVRDLLNDPKKAKV--TIGFDVSDHAKLQFTFDL 135 Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSA-DDLSDEQLQY 152 V S+ R+ + GLK + G + K SDWSA + LSD Q+ Y Sbjct: 136 ECNNVIDLYEISKKNRS-VPRGGLKR-IAHHFGYFLRKDKKISMSDWSATEPLSDIQIHY 193 Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 AA D L + L R + + ++ + D Sbjct: 194 AADDAFFPLLLVAELGGLLNSGVRMESLKENVKVVDNKDKYD 235 >gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001] gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001] Length = 1047 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 64/219 (29%), Gaps = 47/219 (21%) Query: 20 VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57 IAVDTET L + + V L+ G I +A Sbjct: 446 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGDGGAGAD 503 Query: 58 ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 L +L D K+ ++D +VL G+ V P T + S Sbjct: 504 ESDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDFSVLHRY-GIDVAPFDDTMLISY 562 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVH 159 + HG+ + + LG +D + D+ YAA D Sbjct: 563 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDRVAIDKATAYAAEDADV 619 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L +L R + + + A ++ G Sbjct: 620 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 658 >gi|170040469|ref|XP_001848020.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167864104|gb|EDS27487.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 302 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 19/173 (10%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IA D E R+ ++QL + +++ +K L+ +L + Sbjct: 127 PIAFDLEWPF-SFQTGPGRVALMQLCAETDVCYLFQVSCLKKLPAALLQLLNHPRVC--L 183 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF--CTKIASRLTRTYTNQ--HGLKDNLKELLGINIS 132 H + D L F + C + R + ++ + ++ + IS Sbjct: 184 HGVNVKNDFRKLARDFPEANAERMIEQCVDLGQWYNRIHGTTGIWSMERLVLQVCQLRIS 243 Query: 133 --KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 K + S W LSD+Q YAA DV + L+ K LA Sbjct: 244 KNKKVRMSKWHVLPLSDDQKLYAAIDVYIGQEIYLKLQAK-----ELQLAQEE 291 >gi|118089996|ref|XP_001235033.1| PREDICTED: Werner syndrome [Gallus gallus] Length = 1466 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 24/147 (16%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF------H---YGRFD-- 85 ++ ++QL + + I++ L +L DE +K+ H G F+ Sbjct: 71 AKIALIQLCVTEEKCYLFHISSMSGFPKGLKRLLEDETIKKVGVGIEGDHWKLMGDFEVK 130 Query: 86 IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSAD 143 + V + C ++ L +K L G + K+ + +W Sbjct: 131 LKSFVELADVANEKLKCKEV-----------WSLNGLVKHLFGKQLLKDKSIRCGNWEKF 179 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEK 170 L +EQ YAA+D + + Sbjct: 180 PLDEEQKLYAATDAYAGFIIYQKLKTM 206 >gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH] gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH] Length = 872 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 63/201 (31%), Gaps = 30/201 (14%) Query: 21 DAIAVDTETLGL-------MPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNL 66 +A DTET L + + I L Sbjct: 320 KIVAFDTETDSLENPNIVGFSF---------AYEKNKAYYVPINHFYLGVTDQIPEKTAL 370 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + ++ I H +FD +L P T I + + + GL K Sbjct: 371 KAIQKILDKKVIGHNLKFDFKMLKKYGLEIPTPHADTMILAWILDPDSP-VGLDSVAKRY 429 Query: 127 LGINISKAQ----QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L K + + ++S D+ + +YAA D + L EKL + D+ Sbjct: 430 LDHQNIKFKEVIGKRKNFSEVDIQEA-AKYAAEDALISLKLYEILKEKLWEEVKWDIENI 488 Query: 183 CCNFLMDRAELDLLGWENVDI 203 F+ +++ G + +DI Sbjct: 489 EMPFINLLIDIESQGIK-LDI 508 >gi|294911999|ref|XP_002778118.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983] gi|239886239|gb|EER09913.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983] Length = 500 Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 11/162 (6%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI---AVLFYTFGV 95 + +VQL+ D +IR + +L D K+ K+ FD+ A L +TF + Sbjct: 79 ISLVQLATED-LALLIRTNTHHVLPQWVRDLLNDPKKAKV--TIGFDVSDHAKLQFTFDL 135 Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSA-DDLSDEQLQY 152 V S+ R+ + GLK + G + K SDWSA + LSD Q+ Y Sbjct: 136 ECNNVIDLYEISKKNRS-VPRGGLKR-IAHHFGYFLRKDKKISMSDWSATEPLSDIQIHY 193 Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 AA D L + L R + + ++ + D Sbjct: 194 AADDAFFPLLLVAELGGLLNSGVRMESLKENVKVVDNKDKYD 235 >gi|332235202|ref|XP_003266794.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Nomascus leucogenys] Length = 514 Score = 59.6 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 25/144 (17%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGR--FDIAVLFYTF 93 +LC +Q++ + V + I A N L +L D+K K+ H R D L + + Sbjct: 115 KLCWLQVAT-NCRVYLFDIFLLGSGAFNNGLQMILEDKKILKVIHDCRWLSD--CLSHQY 171 Query: 94 GVRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS--- 137 G+ + VF T++A S T Y L+++L + L + + K Q+ Sbjct: 172 GILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVAPKYLSFLEKRQKLIQE 231 Query: 138 --SDWSADDLSDEQLQYAASDVVH 159 W +S L+ A + + Sbjct: 232 NPEVWFIRPVSPSLLKILALEATY 255 >gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12] gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12] Length = 859 Score = 59.6 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 23/211 (10%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + +DTET L + + L+ + I + Sbjct: 268 TTQAQLDDWLQQLENCQVFCLDTETTSLDIMAAEIVGISLAIEEKKAAYIPFIHTDGSVQ 327 Query: 65 NL--------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTN 115 L +L + +KI ++D +VL G+ ++ + + T + S + + Sbjct: 328 LLRDEVFAAIKPILENPAIKKIGQNIKYDYSVLKNH-GIHLQGLAYDTMLESYILNSNAG 386 Query: 116 QHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQ 166 +H + + LG K D A L +Q+ YAA D L + Sbjct: 387 RHDMDTLSLKYLGH---KTITFEDIAGKGAKQLRFDQIPVDKASVYAAEDADITLQLHHK 443 Query: 167 FTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 + S + AE++L G Sbjct: 444 LYPMMAESLHSVFNDIEMPLIPVLAEMELRG 474 >gi|300727989|ref|ZP_07061367.1| 3- 5 exonuclease domain protein [Prevotella bryantii B14] gi|299774831|gb|EFI71445.1| 3- 5 exonuclease domain protein [Prevotella bryantii B14] Length = 229 Score = 59.6 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 14/156 (8%) Query: 20 VDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 D + DTET + R ++++ ++Q+ + + R+ P ++ +L D + K Sbjct: 45 SDILGFDTETRPVFRRGKQNKVSLLQVCNRE-ICFLFRLNRTG-LTPAIIRLLEDTRVTK 102 Query: 78 I---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK 133 I +H D+ L + +A ++ L+ L ISK Sbjct: 103 IGLSWHD---DLLGLHKLGDFEAGSFVELQNLAPKI---GIEDKSLQKIYANLFHQKISK 156 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 +Q+ ++W AD L D Q YAA+D + + Sbjct: 157 SQRLTNWEADVLKDSQKLYAATDAWTCIQIYDELQR 192 >gi|157875674|ref|XP_001686219.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129293|emb|CAJ07833.1| hypothetical protein LMJF_34_1240 [Leishmania major strain Friedlin] Length = 538 Score = 59.6 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 10/149 (6%) Query: 30 LGLMPRRDR---LCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 +G+ R L +VQ + + I G+ + L D K D Sbjct: 15 MGMDSEWCRNLPLAVVQFATSSHCFVLHISFFDGRTLPAAVKEALCDPSIIKCGVGVSGD 74 Query: 86 IAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSA 142 ++ L + ++ V + ++ Q LK K + ++I K S+W Sbjct: 75 VSRLQKEQNITIQSVLDVAQYSALFGLHQGAQSNLKVLAKSVANLSIEKDKMITRSNWEL 134 Query: 143 DDLSDEQLQYAASDVV--HLHALRLQFTE 169 LSD ++ YAA D + +L + Sbjct: 135 -PLSDSRVNYAAEDALASYLVGRAVMLKA 162 >gi|125527138|gb|EAY75252.1| hypothetical protein OsI_03140 [Oryza sativa Indica Group] Length = 357 Score = 59.6 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 12/155 (7%) Query: 23 IAVDTETLGLMPRRD-----RLCIVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKRE 76 + +DTE D ++ ++QL G + +I P L L D Sbjct: 194 VGIDTE-WRTDHLPDGKTCYKVAVLQLCVG-RRCLVFQIYQAGNMVPHELAEFLADPSVR 251 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKA 134 + D+ L +RV + A+ + GLK ++G ++ K Sbjct: 252 FVGVAVNNDMQRLANDCNLRVACAVDLRYAAAAVLGQPELARAGLKRLALTVMGAHMEKE 311 Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + S W L+ EQ+ YA D + + + Sbjct: 312 KNITKSRWGEPTLTWEQVNYACIDAYVSYEIGRRL 346 >gi|260556877|ref|ZP_05829094.1| 3'-5' exonuclease [Acinetobacter baumannii ATCC 19606] gi|260409483|gb|EEX02784.1| 3'-5' exonuclease [Acinetobacter baumannii ATCC 19606] Length = 213 Score = 59.6 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 56/146 (38%), Gaps = 22/146 (15%) Query: 17 ARYVDAIAVDTET--------LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 R + D+E+ + P ++QL+ L Sbjct: 43 LRAATFLGFDSESKPTFQVGEVSTGPH-----LIQLATEHKAYL---FHVNSSTLKFLQP 94 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR-TYTNQHGLKDNLKELL 127 +L + K+ K+ + D +F+ G+ + +A + + Q GL+ + LL Sbjct: 95 ILSNPKQIKVGFGLKND-KHIFHKKGIELESCVD--LAKGFSHFGFKQQMGLQKAVALLL 151 Query: 128 GINISKAQ--QSSDWSADDLSDEQLQ 151 G ++K++ +S+W+ L+ +Q+ Sbjct: 152 GQYLAKSKKVGTSNWARKPLTSQQIS 177 >gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 930 Score = 59.6 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L + + + G + +A +AP+ L Sbjct: 348 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLALL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L + +R + F T + S + + +H + Sbjct: 408 KPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ +YAA D L L+ KLQ+ G + Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 526 Query: 179 LATS-CCNFLMDRAELDLLGWE 199 + + + ++ G + Sbjct: 527 IFQHIEMPLVPVLSRVERNGVK 548 >gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] Length = 976 Score = 59.6 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET L P + L + L+PG ++ +G + Sbjct: 383 AVETGVLAFDTETTSLDPMQAELVGFSL-ALAPGRAAYIPLQHKSGAGDLLGGGMVEGQI 441 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D V+ G+ T + S + T H Sbjct: 442 PLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRH-GINTVSFDDTMLISYVLDAGTGSH 500 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S +S + + YAA D L Sbjct: 501 GMDPLSERWLGHTPIPYKDVAGS--GKSAVSFDMVDLDRATAYAAEDADVTLRLWQVLKP 558 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 559 RLAAEGLMSVYE 570 >gi|294900785|ref|XP_002777114.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239884571|gb|EER08930.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 201 Score = 59.6 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 20/149 (13%) Query: 21 DAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + + +D E ++ + ++Q++ V + R G+ P L L K+ Sbjct: 30 EPLGLDFEWNREFKGQNNPIALIQVATPTNGVLLFRCRPGEDLHPILRDALTCPNTVKVV 89 Query: 80 HYGRFDIA---VLFYTFGVR--VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK- 133 FD L +FG+ R + ++ R ++ GLK ++ L NI K Sbjct: 90 --CGFDSRDKKKLMESFGIEIPPRSLVDVSKEAQ--RQGMHKTGLKAICRD-LQFNIFKP 144 Query: 134 ----AQQSSDWSADDLSDEQLQYAASDVV 158 Q WS L Q++YAA+D Sbjct: 145 TYPNFHQ---WSGR-LRKSQIRYAAADAW 169 >gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181] gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181] Length = 904 Score = 59.6 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 18/171 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------APNLVG 68 + ++DTET L + L + L G I + + +L Sbjct: 324 KEEKFFSIDTETNSLNTMKAELVGISLCINPGRACYIPLCHKNSSVDQLSLAAVLEDLKP 383 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELL 127 +L D +K+ ++D + G+ + + T + S + + N HG+ + L Sbjct: 384 ILEDSSIKKLGQNLKYDAHIFLNY-GIEINGISDDTMLMSYVIESNQN-HGMDKLSAKYL 441 Query: 128 GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 G N + + L+ +Q+ YAA D L L E L Sbjct: 442 GHNCKSYESLVGKGVNQLTFDQVSVEDAVPYAAEDADVTLQLYLAMKETLD 492 >gi|134080969|emb|CAK41483.1| unnamed protein product [Aspergillus niger] Length = 428 Score = 59.6 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 26/177 (14%) Query: 36 RDRLCIVQLSPGDGTVD----IIRIAAGQKNA--PNLVGMLVDEKREKIFHYGRFDIAVL 89 +D + ++Q++ + + R + P+L ++ K+ + D L Sbjct: 239 QDNVSLIQIANRERIALFHVALFRPGRKISDLVPPSLKQIIESPDITKLGVSIKADCTRL 298 Query: 90 FYTFGVRVRPVFCTKIASRLTRT--------YTNQHGLKDNLKELLGINISKAQ--QSSD 139 V +F +L + L + ++E LG+ + KA+ + SD Sbjct: 299 RKYLKVDAHGIFELSHLHKLVKYCQTNPKLINKRPVNLSEQVEEHLGLPLEKAEDVRCSD 358 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFLMDRAELDL 195 W+ LS Q+QYAASD L K + L R L A+LDL Sbjct: 359 WTV-SLSYRQVQYAASDSYACICLFDTMDAKRKALDPRPP--------LPAHADLDL 406 >gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 927 Score = 59.6 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L + + + G + +A +AP+ L Sbjct: 345 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLALL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L + +R + F T + S + + +H + Sbjct: 405 KPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 463 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ +YAA D L L+ KLQ+ G + Sbjct: 464 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 523 Query: 179 LATS-CCNFLMDRAELDLLGWE 199 + + + ++ G + Sbjct: 524 IFQHIEMPLVPVLSRVERNGVK 545 >gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] Length = 946 Score = 59.6 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 39/204 (19%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKRE 76 ++ DTET L L + +S I + Q ++ +L Sbjct: 374 ESFCFDTETTSLNALEAELVGLAISFRAKEAYYIPFTSDQIQTQRILDLLQPAFEKSSIT 433 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 K+ ++D+ VL P+F T +A L +HG+ + L Sbjct: 434 KVGQNLKYDLLVLKKYNFAIAGPLFDTMLAHYLLEPEM-RHGMDTLAEVYLNYT------ 486 Query: 137 SSDWSADDLSDEQL--------------------QYAASDVVHLHALRLQFTEKLQRLGR 176 +S EQL +YAA D L F+ ++ Sbjct: 487 -------PVSIEQLIGKKGAKQGTMRDVEIEAIKEYAAEDADITFQLYKFFSPLVKDQNL 539 Query: 177 SDLATS-CCNFLMDRAELDLLGWE 199 + L A+++L G + Sbjct: 540 NPLFNEVEMPLSEVLADMELEGVK 563 >gi|325856853|ref|ZP_08172351.1| 3'-5' exonuclease [Prevotella denticola CRIS 18C-A] gi|325483226|gb|EGC86203.1| 3'-5' exonuclease [Prevotella denticola CRIS 18C-A] Length = 224 Score = 59.6 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 19/168 (11%) Query: 21 DAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 D I +DTET R ++ ++Q + G + + L D Sbjct: 46 DIIGIDTET------RPVFRKGQHHKVALLQACDREVCFLFRLNIIGIPDC--VKRFLED 97 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+ D+ +L + + + L+ + I+ Sbjct: 98 TTVPKVGLSLGDDMLMLHQRSAFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFHERIT 155 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 K +Q S+W L+D+Q YA++D L + E L+ G +L Sbjct: 156 KREQLSNWENQILNDKQKLYASTDAWTCINLYERLHE-LKHTGDYELV 202 >gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044] gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 930 Score = 59.6 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L + + + G + +A +AP+ L Sbjct: 348 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLTLL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L + +R + F T + S + + +H + Sbjct: 408 KPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ +YAA D L L+ KLQ+ G + Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 526 Query: 179 LATS-CCNFLMDRAELDLLGWE 199 + + + ++ G + Sbjct: 527 IFQHIEMPLVPVLSRVERNGVK 548 >gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC 35316] gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316] Length = 930 Score = 59.6 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 20/202 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L + + + G + +A +AP+ + Sbjct: 348 LKKAPVFAFDTETDSLDNISANMVGLSFATAPGVAAYVPVAHDYLDAPDQIPRDRVLELM 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+K K+ +FD +L G+ +R + F T + S + + +H + Sbjct: 408 KPVLEDDKALKVGQNLKFDRGILQNY-GIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ +YAA D L L+ KLQ+ G + Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQKHEGPLN 526 Query: 179 LATS-CCNFLMDRAELDLLGWE 199 + + + ++ G + Sbjct: 527 VFQHIEMPLVPVLSRIERNGVK 548 >gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] Length = 896 Score = 59.6 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L ++ V + G + +A AP + Sbjct: 314 LEAAELFAFDTETTSLNYMEAKVVGVSFAIEAGKAAYVPLAHDYLGAPEQLDRDAVLAQM 373 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + K+ ++D +VL G+ ++ + + T + S + + +H + + Sbjct: 374 KPLLEDPNQAKVGQNLKYDASVLANH-GIALKGIDYDTMLESYVLDSTATRHDMDSLALK 432 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 LG N + + A L+ Q++ YAA D L KL+ L Sbjct: 433 YLGQNTIHFEDIAGKGAKQLTFNQVKVEEAGPYAAEDADITLRLHQALWPKLEEL 487 >gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila] Length = 893 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 20/199 (10%) Query: 17 ARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVG 68 + + AVD ET L P D + + +S I + ++ L Sbjct: 314 LKESPSFAVDLETSSLDPFDCDIVG-ISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKLKE 372 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L D + + +FD VL V P F T IA+ L + L D + LG Sbjct: 373 ILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPHFDTMIAAYLIEPNEKKFNLDDLALKFLG 432 Query: 129 INISKAQQSSDWSADDL---------SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 ++ Q+ +S+ L ++ Y+ D + L + KL ++ Sbjct: 433 YKMTSYQELMSFSS-PLFGFSFADVPVEKAANYSCEDADITYRLYKTLSLKLHEADLENV 491 Query: 180 -ATSCCNFLMDRAELDLLG 197 + A ++L G Sbjct: 492 FYKIEMPLVNVLARMELNG 510 >gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] Length = 930 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L + + + G + +A +AP+ L Sbjct: 348 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLTLL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L + +R + F T + S + + +H + Sbjct: 408 KPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ +YAA D L L+ KLQ+ G + Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 526 Query: 179 LATS-CCNFLMDRAELDLLGWE 199 + + + ++ G + Sbjct: 527 IFQHIEMPLVPVLSRVERNGVK 548 >gi|294898985|ref|XP_002776447.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239883438|gb|EER08263.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 201 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 20/149 (13%) Query: 21 DAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + + +D E ++ + ++Q++ V + R G+ P L L K+ Sbjct: 30 EPLGLDFEWNREFKGQNNPIALIQVATPTNGVLLFRCRPGEDLHPILRDALTCPNTVKVV 89 Query: 80 HYGRFDIA---VLFYTFGVR--VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK- 133 FD L +FG+ R + ++ R ++ GLK ++ L NI K Sbjct: 90 --CGFDSRDKKKLMESFGIEIPPRSLVDVSKEAQ--RQGMHKTGLKAICRD-LQFNIFKP 144 Query: 134 ----AQQSSDWSADDLSDEQLQYAASDVV 158 Q WS L Q++YAA+D Sbjct: 145 TYPNFHQ---WSGR-LRKSQIRYAAADAW 169 >gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] Length = 942 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-------LVGM 69 R A A DTE L P L + ++ TV I + + L Sbjct: 355 LRNAPAFAFDTECTSLQPVASDLVGISIAIAPDTVCYIPVGHQSETQVPCGEVVTALAPF 414 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122 + ++ K H +FD+ VL G++V + F T IA+ + + GLKD Sbjct: 415 FANPQQPKFAHNAKFDMEVL-AGAGIKVSGLAFDTMIAAAML---GKRQGLKDL 464 >gi|326920474|ref|XP_003206497.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Meleagris gallopavo] Length = 322 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 20/177 (11%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGML 70 PA + D I+V E + L R +L +Q++ G + N L +L Sbjct: 64 PAVLHLKQQDVISVVGEGVNL-CRNGKLSWLQMATKSHIFLFDIFLLGPQAFRNGLQTVL 122 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA-----SRLTRTYTNQ--HGLKDNL 123 D+ K+ H R+ LF+ + V + VF T++A S T + L++ L Sbjct: 123 EDKNILKVMHDCRWISDCLFHQYNVLLDNVFDTQVADVLQFSVATGGFFPHCTCTLQECL 182 Query: 124 KELLGI-----NISKAQQ-----SSD-WSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + L I + K +Q + D W Q A ++L LR + Sbjct: 183 MQHLKIPSKWKTLMKHEQQMALENPDMWFLRPFPASLFQVLALKAMYLLLLRSSLMD 239 >gi|164515888|emb|CAP48106.1| putative integron gene cassette protein [uncultured bacterium] Length = 199 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 11/140 (7%) Query: 36 RDRLC--IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 + R ++QLS + R + L ++ + K+ D A + Sbjct: 65 QPRTGPHVLQLST-QQQAFLFRPGNTICD-EILAEIIQSKTIIKVGFGLSSDRAPIQRKL 122 Query: 94 GVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQ 149 GV++R S L Y + GL+ + +L + SK S+W+A LS Q Sbjct: 123 GVKLRSAIE---LSVLVHRLGYRPRVGLQSAVSIVLNQYLQKSKKLTLSNWNAKLLSARQ 179 Query: 150 LQYAASDVVHLHALRLQFTE 169 + YAA+D + + T Sbjct: 180 ILYAANDAYASLQVYSKLTR 199 >gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] Length = 911 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 24/178 (13%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 + A DTET L + +L + + G + +A AP L + Sbjct: 331 AELFAFDTETTSLDYMQAQLVGMSFAVKAGEAAYLPVAHDYPGAPEQLSLEFVMQKLGPI 390 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D K+ K+ ++D +VL G ++ + F T + S + + +H + + LG Sbjct: 391 LADAKKAKVGQNLKYDKSVLANA-GYQLNGIKFDTMLESYVLNSVGTRHDMDSLALKFLG 449 Query: 129 INISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177 K D L+ Q++ YAA D L KL + Sbjct: 450 H---KNISFEDIAGKGKKQLTFNQVELDKAGPYAAEDADITLRLHQVLWPKLAADEKL 504 >gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] Length = 929 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 20/176 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRD-RLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65 + + A D ET L + + + G + +A +AP Sbjct: 346 LQNSELFAFDLETDSLDTLSANIIGL-SFATAPGVAAYLPVAHDYLDAPAQLDRNDVLAR 404 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 L +L + + K+ +FD VL ++ + ++ + F T + S + +H + Sbjct: 405 LKPLLENPQALKVGQNLKFDRGVL-KSYDIELQGIRFDTMLESYALNSVIGRHDMDTLAL 463 Query: 125 ELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 L ++ + L+ Q+ YAA D L L+ L++ Sbjct: 464 RWLNHKTVTFEEIAGKGKKQLTFNQIALEQAGHYAAEDADVTLQLHLKMWPALEKE 519 >gi|327314590|ref|YP_004330027.1| 3'-5' exonuclease [Prevotella denticola F0289] gi|326944244|gb|AEA20129.1| 3'-5' exonuclease [Prevotella denticola F0289] Length = 224 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 19/168 (11%) Query: 21 DAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72 D I +DTET R ++ ++Q + G + + L D Sbjct: 46 DIIGIDTET------RPVFRKGQHHKVALLQACDREVCFLFRLNIIGIPDC--VKRFLED 97 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+ D+ +L + + + L+ + I+ Sbjct: 98 TTVPKVGLSLGDDMLMLHQRSAFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFHERIT 155 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 K +Q S+W L+D+Q YA++D L + E L+ G +L Sbjct: 156 KREQLSNWENQILNDKQKLYASTDAWTCINLYERLHE-LKHTGDYELV 202 >gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8] gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8] Length = 905 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 30/206 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAP---------NL 66 + +AVDTET L + R+ + L+ G I +A G NAP L Sbjct: 326 LKDAPLVAVDTETTSLDEMQARMVGMSLAVSPGVACYIPVAHRGPDNAPQLPKAEVLARL 385 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 L D R K+ H+ ++D V G+++ + T + + + ++ GL D + Sbjct: 386 KPWLEDATRAKLLHHAKYDAHVFANE-GIKLAGITEDTMLQAYVLESH-RGVGLNDLAQR 443 Query: 126 LLGINISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR- 173 LG + D +Q+ YAA D L + Sbjct: 444 YLGRS---GVSYEDLCGK--GAKQIGFDEVAVDKAGHYAAEDSDFTLQLHQVLRPMVAAD 498 Query: 174 LGRSDLATSCCNFLMDRAELDLLGWE 199 G + + ++ G + Sbjct: 499 EGLNRIYLLEMQVSEVLTTVERNGVK 524 >gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] Length = 1001 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 58/210 (27%), Gaps = 56/210 (26%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----- 57 T+ E P AA +A DTET L + L + LS G I + Sbjct: 393 TVTTLEQLQPWIDAAYEKGYVAFDTETTSLDAMQAELVGISLSCKPGKACYIPLTHKDGE 452 Query: 58 --------------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 L ML D KI ++D V+ GV V P T Sbjct: 453 GDLLGGGGLLPDQIPLDDALKALKPMLEDRGILKIAQNLKYDWLVMTRH-GVDVDPYDDT 511 Query: 104 KIASRLTRTYTNQHGLKDNLKELLG---------------------INISKAQQSSDWSA 142 + S +G+ + + LG + I KA Sbjct: 512 MLLSYTVDAGKGGNGMDELSERWLGHKPIPFKEVCGSGKSMITFDKVAIDKAT------- 564 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 YAA D L L +L Sbjct: 565 --------AYAAEDADVTLRLWLTLKPRLA 586 >gi|222628416|gb|EEE60548.1| hypothetical protein OsJ_13896 [Oryza sativa Japonica Group] Length = 166 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 5/133 (3%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 + ++QL D + +I L L D + + R D A L +G+ V Sbjct: 27 VAVLQLCV-DRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVP 85 Query: 99 PVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAA 154 + + L R + GL+ ++E++G+ + K + S W +LS++Q +YA Sbjct: 86 RAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYAC 145 Query: 155 SDVVHLHALRLQF 167 +D + + Sbjct: 146 ADAFASREVGRRL 158 >gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1] gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1] Length = 943 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 14/163 (8%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEKREK 77 ++ DTET GL L + S G + Q EK Sbjct: 371 SVCFDTETTGLKALEVELVGIAFSWEKGKGYYVAFPEDQSETTAILEEFRPFFESTTIEK 430 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG------INI 131 + ++DI VL +F T IA L +H + + L + + Sbjct: 431 VGQNLKYDIKVLSNYDMPVKGQLFDTMIAHYLINP-DMRHNMDVLSETYLNYQPVSIVEL 489 Query: 132 SKAQQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + + S L ++Q +YA D + L+ F ++L+ Sbjct: 490 IGKKGKNQLSMRQVPL-EQQTEYAVEDADITYQLKEHFIKELE 531 >gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2] Length = 935 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + IAVDTET + L V G + +A +AP L Sbjct: 352 LKAAPLIAVDTETTSVNYMEAELVGVSFCIEPGAAAYVPVAHDYPDAPTQLSRDYVLSAL 411 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L E K+ + ++D VL + + + + F T + S + + +H + Sbjct: 412 KPILESETIIKVGQHIKYDKNVLAHY-DITLNGIGFDTMLESYVLNSTAQRHDMDSLALA 470 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 LG ++ + A L+ Q+ YAA D L KL+ Sbjct: 471 YLGHKTIHFEEIAGKGAKQLTFNQIGLEEAGPYAAEDADITMRLHQAIWAKLENE 525 >gi|115457358|ref|NP_001052279.1| Os04g0225100 [Oryza sativa Japonica Group] gi|38344132|emb|CAD39842.2| OSJNBb0072N21.11 [Oryza sativa Japonica Group] gi|113563850|dbj|BAF14193.1| Os04g0225100 [Oryza sativa Japonica Group] Length = 211 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 5/133 (3%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 + ++QL D + +I L L D + + R D A L +G+ V Sbjct: 72 VAVLQLCV-DRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVP 130 Query: 99 PVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAA 154 + + L R + GL+ ++E++G+ + K + S W +LS++Q +YA Sbjct: 131 RAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYAC 190 Query: 155 SDVVHLHALRLQF 167 +D + + Sbjct: 191 ADAFASREVGRRL 203 >gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 896 Score = 59.2 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 18/189 (9%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAGQKNAPNLVGMLVDEKREKIF 79 I DTET + P + L + + + Q+ + + + Sbjct: 329 ICFDTETTDIQPLKAELVGIGFGIHPKKAWYVPLNGKLGKQRVLEGVKPLFENSAIGFYG 388 Query: 80 HYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQ 135 H ++D VL G++++ + F T +AS + ++ QH L+ E G I IS+ Sbjct: 389 HNVKYDWHVLQNE-GIQIQNICFDTILASYILNAHSRQHSLEVLALEYFGKVTIPISELI 447 Query: 136 QSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLM 188 + LS + +Y DV L+ ++L+ +L L+ Sbjct: 448 GK---GKNVLSMRDVPIERVTEYCCEDVDFTCRLKEVLEKQLKERDLLNLYHQIELPLLV 504 Query: 189 DRAELDLLG 197 A+++ G Sbjct: 505 VLAKMERRG 513 >gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1] gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1] Length = 946 Score = 59.2 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 62/188 (32%), Gaps = 34/188 (18%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGM--- 69 A +AVDTET L L V L+ I +A G + P V M Sbjct: 353 ASAARLVAVDTETSSLDAMEADLVGVSLALAPNDACYIPLAHGGTDMFSDKPEQVAMEDA 412 Query: 70 -------LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA-----SRLTRTYTNQH 117 L D+ K+F G++D+ VL G+ V P+ T + + H Sbjct: 413 LAALKLLLEDDSVLKVFQNGKYDLNVLAR-VGIDVSPIEDTMVMSFDLDAGRGEGMGGGH 471 Query: 118 GLKDNLKELLGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHALRLQF 167 G+ + + L + K D + L +YAA D L Sbjct: 472 GMDELSERHL---LHKPLAFKDVCGTGKKAIPFGEVPLDRA-TEYAAEDADVTLRLYRML 527 Query: 168 TEKLQRLG 175 +L G Sbjct: 528 KPRLSEEG 535 >gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] Length = 939 Score = 59.2 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 28/176 (15%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-------------M 69 A+DTET L L + LS G I I K+ P++ Sbjct: 357 FAIDTETNSLDTMVANLVGISLSYRPGEAFYIPIGHQNKSDPSIKKQLKLKDVLSVIKPY 416 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D +K+ ++D + G+++ + T + S N+HG+ + L Sbjct: 417 LEDPTVKKVGQNIKYDYRIFLKH-GIQMNSIEDTMLMSYSLDAGKNRHGMDLLSELHLNH 475 Query: 130 N---------ISKAQQSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLG 175 I K+Q + D+ + EQ YA D L F ++L Sbjct: 476 KTISFKDVAGIGKSQVTFDF----VDIEQAKDYACEDADITLRLYKMFEKRLFNEN 527 >gi|322501847|emb|CBZ36929.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 754 Score = 59.2 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 26/185 (14%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVDEKREKI 78 IA+D E L +CI+ L+ TV II + A ++ L +L K+ Sbjct: 550 IALDLEGRSLGRMGS-ICIITLATYS-TVYIIDVVMLGAEALRSGSPLQRVLESRDIMKL 607 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------GLKDNLKELLGI 129 R D LF+ + VR++ V +I+S T+ H L E GI Sbjct: 608 MFDCRADCDALFFLYCVRLQNVCDLQISSCFALFPTSPHLPGMKSVFLALGLFTDEDTGI 667 Query: 130 NISKAQ--------QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLGRSD 178 + W L+D +QY A DV + A +L + ++ RLG + Sbjct: 668 KNAGRHLFNPRCGGSFDRWEERPLTDVLVQYCAVDVKYFFAAQLILWDHVEQGCRLGEAR 727 Query: 179 LATSC 183 LA+ C Sbjct: 728 LASVC 732 >gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165] gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165] Length = 954 Score = 59.2 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 41/197 (20%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------- 65 + + +AVDTET L + L + +G I +A K A Sbjct: 351 LQMAELVAVDTETDNLDAMQANLVGISFGLENGEACYIPLAHKGKIAQPTQVDLFGESEA 410 Query: 66 ---------------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103 L +L + KI ++D+ + G+ ++ V F T Sbjct: 411 ELDEVEALLPNQLNKADCLAQLKPILENPNIRKIGQNIKYDLTIFARY-GIELQGVAFDT 469 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157 + S + T +H + + + LG ++ + L+ +Q+ +YA D Sbjct: 470 MLQSYTLDS-TGRHNMDNLAERYLGHQTIPFEELAGKGKHQLTFDQIELDKATEYAGEDA 528 Query: 158 VHLHALRLQFTEKLQRL 174 L +LQ+ Sbjct: 529 EITMKLHQLLWSELQKT 545 >gi|146096632|ref|XP_001467873.1| hypothetical protein [Leishmania infantum JPCM5] gi|134072239|emb|CAM70942.1| hypothetical protein, unknown function [Leishmania infantum JPCM5] Length = 754 Score = 59.2 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 26/185 (14%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVDEKREKI 78 IA+D E L +CI+ L+ TV II + A ++ L +L K+ Sbjct: 550 IALDLEGRSLGRMGS-ICIITLATYS-TVYIIDVVMLGAEALRSGSPLQRVLESRDIMKL 607 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------GLKDNLKELLGI 129 R D LF+ + VR++ V +I+S T+ H L E GI Sbjct: 608 MFDCRADCDALFFLYCVRLQNVCDLQISSCFALFPTSPHLPGMKSVFLALGLFTDEDTGI 667 Query: 130 NISKAQ--------QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLGRSD 178 + W L+D +QY A DV + A +L + ++ RLG + Sbjct: 668 KNAGRHLFNPRCGGSFDRWEERPLTDVLVQYCAVDVKYFFAAQLILWDHVEQGCRLGEAR 727 Query: 179 LATSC 183 LA+ C Sbjct: 728 LASVC 732 >gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1] gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1] Length = 904 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R DA ++D ET L + V L+ G + +A AP+ L Sbjct: 321 LRNADAFSIDLETNSLNYMDAEIVGVSLAVEPGQAAYLPVAHCGPGAPDQLDRDRVLDAL 380 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L E+ EK+ ++D++VL G+ +R V + + + S + + +H + + Sbjct: 381 RPLLEAEQPEKMGQNLKYDMSVLARY-GIELRGVAYDSMLESYVLDSTATRHDMDSLASK 439 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL-GRSD 178 LG+ ++ +Q + ++ YAA D L +LQ G Sbjct: 440 YLGVEVTSYEQLCGKGVRQVPFAEIDVERAGHYAAEDADIALRLHQLLYPRLQAESGLLR 499 Query: 179 LATS-CCNFLMDRAELDLLG 197 + + L + ++ G Sbjct: 500 VFSQLEMPLLPVLSRMERHG 519 >gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 929 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 69/216 (31%), Gaps = 30/216 (13%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 +TT E +P A I DTET L ++ + LS I Sbjct: 339 LTTQTEVEALLPELLA---QKEICFDTETTSLNEMEAQIVGLALSYEIHKGYYILFPEDF 395 Query: 61 KNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTN 115 A L +E KI ++D +L G+ V+ F T IA L Sbjct: 396 SLAKQWFLLLKPFFENESILKIGQNLKYDFKILANY-GIEVKGEFFDTMIAHYLLNP-DM 453 Query: 116 QHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHA 162 +H + + LG + I K L+ + Q +YA D Sbjct: 454 RHNMDLLSEAYLGYSPISIETLIGKK------GKGQLTMRAVPAELQKEYAVEDTDVTLQ 507 Query: 163 LRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L+ F L++ L + A+++ G Sbjct: 508 LKHVFLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEG 543 >gi|254505350|ref|ZP_05117498.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] gi|222436194|gb|EEE42876.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] Length = 580 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 13/155 (8%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD--EKREKIFHYG-RFDIAVLFYTF- 93 RL +QL GD D + A Q P + + E +FH G FDI + + + Sbjct: 3 RLWTIQL--GDANTDEATVYADQIGFPPIKDAIKRLKEADRVVFHNGQGFDIHAINHFYP 60 Query: 94 GVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 G V+ T +A+RL + L D K LG K + D+S S E ++Y Sbjct: 61 GTLTPHQVWDTLVAARLLNPSERANSLDDWGKR-LGEY--KGE-FKDFSR--FSKELVEY 114 Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 A DVV L + +L+ G+S + ++ Sbjct: 115 ARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYI 149 >gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902] gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902] Length = 998 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 58/179 (32%), Gaps = 30/179 (16%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------------- 68 IAVDTET L P + L V + G+ + I G K L Sbjct: 399 PIAVDTETTDLNPFKAELVGVGVCWGEANDALAYIPIGHKPPSELSEATPPQQLPLETVL 458 Query: 69 -----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + K ++D +L V T +A R +HGL Sbjct: 459 MALSPWLASPQHPKALQNAKYDRLILLRHGLTLNGVVIDTLLA-DYLRDAAAKHGLDLMS 517 Query: 124 KELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + G + K Q +D + + S Y DV L LQ + LQ +G Sbjct: 518 EREFGFRPTTYGDLVGKKQTFADVAIEPAS----LYCGMDVHVTRRLALQLRQTLQAMG 572 >gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251] gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251] Length = 902 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 32/211 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIV--QLSPGDGTVDIIRIA---------AGQKNAPN 65 R +A DTET GL D +V + + IA Q++A Sbjct: 328 LRDDTIVAFDTETTGLDYEND--SLVGFSFCFNEDEAYYVPIAHFYLGVGEQISQEDAKI 385 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLK 124 + + + + + H +FD+ + G +F + I + L + L + Sbjct: 386 AIKKIFNSRV--VGHNIKFDLHFVIRFLGEGELDIFADSMILAWLINPES-ALSLDKLSE 442 Query: 125 ELL-------GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 +LL ++ K + + + L + YAA D L F E L+ G Sbjct: 443 KLLEHKMITFKESVKKGETFA---SVALEEA-CNYAAEDAYITLRLYYLFLEMLKDQGAE 498 Query: 178 DLATS----CCNFLMDRAELDLLGWENVDIF 204 L F+ ++++ G E +F Sbjct: 499 HLIEEAKEVEFPFIKTLLKMEMHGIELNSLF 529 >gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] Length = 930 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 27/177 (15%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--------AAGQKNAPNLVGMLV 71 + I +DTET L P RL + ++ G I I + + +L L Sbjct: 352 AEQIGLDTETTSLDPMNARLVGISMAFAAGEAVYIPINHTFAEQQLSWETLLGSLKPYLE 411 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + KI ++D V G++++ + +AS + ++ HGL + + LG+ Sbjct: 412 SKTLLKIGQNLKYDQHVFANH-GIQLQGIAGDAMLASYVLESHL-GHGLDELAQRWLGLE 469 Query: 131 I----------SKAQQSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGR 176 +K +D +S EQ +YA D + ++ R Sbjct: 470 TITYESLCGKGAKQISFAD-----VSVEQATEYACQDADFALRIEAHLKAQMSDEQR 521 >gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1] gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1] Length = 898 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 74/197 (37%), Gaps = 30/197 (15%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNLVGMLVD 72 +A DTET GL R D++ + + + + L ++ Sbjct: 330 VAFDTETTGLDTRTDKMVGFSFCTSNEKAYYVPVGHSYLGVEEQVDPEDAVAALKKLMK- 388 Query: 73 EKREKIFHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 +K + +FD+++L+ +G+ V P T I + LT ++ GL ++ ++ Sbjct: 389 QKI--VGQNLKFDLSLLYNQYGMEEVLPFADTMIMAWLTDP-GSRVGLDSLAQKFFKYDM 445 Query: 132 -------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-- 182 K + ++S +++D YAA D L +K++ + L Sbjct: 446 KPFKEMVKKGE---NFSHVNIADA-TFYAAEDAWMTFLLYGAIKKKMELSSLTHLLKEAK 501 Query: 183 --CCNFLMDRAELDLLG 197 F+ ++ LG Sbjct: 502 DVEYPFINVLIRMERLG 518 >gi|145525585|ref|XP_001448609.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124416164|emb|CAK81212.1| unnamed protein product [Paramecium tetraurelia] Length = 498 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 25/160 (15%) Query: 24 AVDTETLGLMPRRD----------RLCIVQLSPGDGTVDI--IRIAAGQKNAPNLVGMLV 71 +DTE +D ++C+ Q++ + + + K LV Sbjct: 344 GIDTE-----SYQDIPQNTFSAKNQVCLFQIALPNKIYLLNTTNLVNSIKYQQFLVQ-YA 397 Query: 72 DEKREKIFHYGRFDIAVLFYTFG---VRVRPVFCTKIASRLTRTYTN--QHGLKDNLKEL 126 KI + D L G V +R +++ + Y + + L + L Sbjct: 398 SSDCLKIGQNIKMDFLCLLVQIGKQDVDLRNFI--ELSQLFRQKYPDEKKTNLSFQCQRL 455 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 LG + K +Q S W L Q+ YAA D + L Sbjct: 456 LGKELDKVEQISHWQKRPLRSAQIHYAALDAIICLHLYNH 495 >gi|282895828|ref|ZP_06303911.1| hypothetical protein CRD_00333 [Raphidiopsis brookii D9] gi|281199216|gb|EFA74083.1| hypothetical protein CRD_00333 [Raphidiopsis brookii D9] Length = 446 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 +SDW LS QL+YAA DV++L A+ + E Sbjct: 3 TSDWGERPLSSRQLKYAAMDVIYLAAVHHRLLE 35 >gi|116309147|emb|CAH66248.1| OSIGBa0101A01.4 [Oryza sativa Indica Group] Length = 211 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 5/133 (3%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 + ++QL D + +I L L D + + R D A L +G+ V Sbjct: 72 VAVLQLCV-DRRCLVFQILHADYLPDALSRFLADPRYTFVGVGVRDDAARLRVGYGLEVP 130 Query: 99 PVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAA 154 + + L R + GL+ ++E++G+ + K + S W +LS++Q +YA Sbjct: 131 RAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYAC 190 Query: 155 SDVVHLHALRLQF 167 +D + + Sbjct: 191 TDAFASREVGRRL 203 >gi|297696371|ref|XP_002825370.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Pongo abelii] Length = 572 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 25/144 (17%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGR--FDIAVLFYTF 93 +LC +Q++ + V + I A N L +L D++ K+ H R D L + + Sbjct: 173 KLCWLQVAT-NCRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQY 229 Query: 94 GVRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS--- 137 G+ + VF T++A S T Y L+++L + L + + K Q+ Sbjct: 230 GILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVAPKYLSFLEKRQKLIQE 289 Query: 138 --SDWSADDLSDEQLQYAASDVVH 159 W +S L+ A + + Sbjct: 290 NPEVWFIRPVSPSLLKILALEATY 313 >gi|47230240|emb|CAG10654.1| unnamed protein product [Tetraodon nigroviridis] Length = 464 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 4/82 (4%) Query: 30 LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAV 88 + RLC +Q++ + G N + +L ++ K+ H R Sbjct: 39 MSEH---GRLCWLQIATKKRVYLFDILLLGSMAFRNGISSILESKEILKVLHDCREIAGF 95 Query: 89 LFYTFGVRVRPVFCTKIASRLT 110 L FGV++ VF T++A + Sbjct: 96 LMGQFGVKLNNVFDTQVADLMC 117 >gi|297296193|ref|XP_002804776.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 2 [Macaca mulatta] Length = 572 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 25/144 (17%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGR--FDIAVLFYTF 93 +LC +Q++ + V + I A N L +L D++ K+ H R D L + + Sbjct: 173 KLCWLQVAT-NCRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQY 229 Query: 94 GVRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS--- 137 G+ + VF T++A S T Y L+++L + L + + K Q+ Sbjct: 230 GILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVAPKYLSFLEKRQKLIQE 289 Query: 138 --SDWSADDLSDEQLQYAASDVVH 159 W +S L+ A + + Sbjct: 290 NPEVWFIRPVSPSLLKILALEATY 313 >gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N] gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N] Length = 904 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 39/192 (20%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------AGQKNAPNL 66 A +A+DTET L + RL + ++ G I +A Q+ L Sbjct: 326 AEATPLVALDTETTSLDEMQARLVGLSMAVEPGVACYIPLAHRGPEAGTQLPKQEVLERL 385 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 G L D R K+ H+ ++D V G+ +R V T + + + ++ GL D + Sbjct: 386 RGWLEDATRSKLLHHAKYDTHVFANE-GIALRGVTEDTMLQAYVLESH-RGVGLNDLAQR 443 Query: 126 LLGINISKAQQSSDWSADDL---SDEQL-----------QYAASDVVHLHALRLQFT--- 168 LG S + +DL +Q+ YAA D L Sbjct: 444 YLG--------RSGVNYEDLCGKGAKQIGFDEVAVDRAGFYAAEDADFTLQLHQALRPGV 495 Query: 169 -EKLQRLGRSDL 179 +L+R+ + +L Sbjct: 496 TGELERIYKLEL 507 >gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505] gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505] Length = 911 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 24/178 (13%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 + A DTET L + +L + + G + +A AP L + Sbjct: 331 AELFAFDTETTSLDYMKAQLVGMSFAVKAGEAVYLPLAHDYPGAPEQLSLEFVMQKLGPI 390 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L DE + K+ ++D +VL G + + F T + S + + +H + + LG Sbjct: 391 LADENKAKVGQNLKYDKSVLANA-GFALNGIKFDTMLESYVFNSVGTRHDMDSLALKYLG 449 Query: 129 INISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177 K D L+ Q++ YAA D L K+ + Sbjct: 450 H---KNISFEDIAGKGKKQLTFNQIELEKAAPYAAEDADITLRLHEVLWPKIAADEKL 504 >gi|301619865|ref|XP_002939304.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Xenopus (Silurana) tropicalis] Length = 1431 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 32/173 (18%) Query: 16 AARYVDAIAVDTETLGLMPRRD---------RLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + D + D E ++ ++Q+ + + I+ L Sbjct: 66 SLQEEDVLGFDIE-------WPPIYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGL 118 Query: 67 VGMLVDEKREKIFHY--GRF-----DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 +L DE +K+ G D + F +++A++ R + L Sbjct: 119 RRLLEDESVKKVGVGIEGDQWKLMSDYELKLKGFIEL------SEVANQKLRC-KEKWSL 171 Query: 120 KDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +K L + K + S+W LS +Q YAASD + + Sbjct: 172 NGLVKHLFKKQLLKDSSIRCSNWDIFPLSTDQKLYAASDAYAGLLIYQKLECM 224 >gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] Length = 1020 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 51/141 (36%), Gaps = 20/141 (14%) Query: 9 GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---------- 57 ++ A CA AR +A DTET L P + L V L+ I +A Sbjct: 418 DELKAWCAKARDQGFVAFDTETTSLDPMQADLVGVSLALAPNEACYIPLAHVGAGDGLFT 477 Query: 58 --------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 L GML D KI H ++D AVL G+ V P CT S Sbjct: 478 EGLLPGQIPFNDALAALKGMLEDGGTLKIGHNVKYDAAVLARH-GITVAPYDCTMCMSYA 536 Query: 110 TRTYTNQHGLKDNLKELLGIN 130 HG+ + + LG Sbjct: 537 LDAGRGGHGMDELSIKYLGHT 557 >gi|89267461|emb|CAJ83573.1| Werner syndrome homolog (human) [Xenopus (Silurana) tropicalis] Length = 1171 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 32/173 (18%) Query: 16 AARYVDAIAVDTETLGLMPRRD---------RLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 + + D + D E ++ ++Q+ + + I+ L Sbjct: 66 SLQEEDVLGFDIE-------WPPIYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGL 118 Query: 67 VGMLVDEKREKIFHY--GRF-----DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 +L DE +K+ G D + F +++A++ R + L Sbjct: 119 RRLLEDESVKKVGVGIEGDQWKLMSDYELKLKGFIEL------SEVANQKLRC-KEKWSL 171 Query: 120 KDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +K L + K + S+W LS +Q YAASD + + Sbjct: 172 NGLVKHLFKKQLLKDSSIRCSNWDIFPLSTDQKLYAASDAYAGLLIYQKLECM 224 >gi|312374647|gb|EFR22158.1| hypothetical protein AND_15698 [Anopheles darlingi] Length = 758 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 11/146 (7%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IA D E R ++QL + +++ + L+ +L ++ + Sbjct: 205 PIAFDLEWPF-SFKTGPGRTALLQLCVEPDRCILYQLSCLKHLPIALLQLLRHKRVILLG 263 Query: 80 HYGRFDIAVLFYTF------GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI-- 131 + D+ L F + T + ++++L + Sbjct: 264 VNIKNDLRKLARDFPEVSSVDSIIERCIDLGQFYNKLHNRTGIWSMDRLVQQVLKQRVNK 323 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDV 157 K + S W LS++Q +YAA DV Sbjct: 324 DKRVRMSKWDVLPLSEDQKRYAAIDV 349 >gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255] gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255] Length = 932 Score = 58.9 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 66/212 (31%), Gaps = 41/212 (19%) Query: 19 YVDAIAVDTETLGLMPRRDRL------CIVQLSPGDGTVDIIRI---------------- 56 +AVDTET GL D + C+ S G I + Sbjct: 343 QRGYVAVDTETTGLN---DMIVDLVGICL---SVEIGEACYIPVGHTNGENDLFGGASLC 396 Query: 57 ---AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 + L +L D KI ++D + V + PV T + S Sbjct: 397 NGQINLDEALEILRPVLQDPSIIKIGQNVKYDTKIFARY-DVNLAPVDDTMLLSYAINGG 455 Query: 114 TNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 + HG+ + L + + + + ++D + YAA D L Sbjct: 456 KHNHGMDYLSERYLNHKPISIKTLLGSGKSAITFDKVSINDA-VNYAAEDADITLRLWKL 514 Query: 167 FTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 F L + + + + A++++ G Sbjct: 515 FKPMLHESSVTKIYETLERPLIPVLAKMEMNG 546 >gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] Length = 926 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R A DTET L P + L + ++ G + AP L Sbjct: 344 LRAAGQFAFDTETDSLDPLQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQALAQL 403 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K+ +G++D+ V+ T + S + + + +H + K Sbjct: 404 APLLTDPALRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 463 Query: 127 LGINIS-------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 LG + K + ++ L D +YAA D L KL Sbjct: 464 LGYDTVKYEDVCGKGAKQIKFAQVSLEDA-TRYAAEDADITLRLHQVLGPKLSAE 517 >gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] Length = 930 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 24/212 (11%) Query: 11 IPAECAARYVDAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---- 65 + E A + + DTET GL D + + + G + ++ A Sbjct: 349 LAKELAGQ--KSFCFDTETTGLDALVADIVGL-SFAFEKGKAYYVPTPDSREQALEIVNI 405 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 +L D EK+ ++DI +L +F T +A L T +HG+ + Sbjct: 406 FKPVLEDANIEKVGQNIKYDILLLSRYDVKVKGTLFDTMLAHYLIDPDT-RHGMDVLAEN 464 Query: 126 LLG---INISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLG 175 LG ++I+K +Q + D+ E + +YA+ D L+ +F L+ Sbjct: 465 YLGYIPVSITKLIGEKGKKQG---NMRDVEIELIKEYASEDADITLQLKEKFEPLLEETA 521 Query: 176 RSDLATS-CCNFLMDRAELDLLGWE-NVDIFS 205 LA + +E++ G + +VD+ S Sbjct: 522 TLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLS 553 >gi|71982776|ref|NP_001021324.1| hypothetical protein C10G6.1 [Caenorhabditis elegans] gi|51536916|gb|AAU05593.1| Hypothetical protein C10G6.1b [Caenorhabditis elegans] Length = 569 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 31/187 (16%) Query: 23 IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKREKIF 79 + VD E L L ++ + I +A+ G+L EK K+ Sbjct: 327 VGVDGEIFLS-------LGVI---ATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN-------LKE------- 125 H R ++L + + V +R VF T++A L + L + L+ Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHEKFNKSLNEMRPISFINLQRVYYPQSI 436 Query: 126 -LLGINISKAQQSSDWSADDLSDE-QLQYAASDVVHLH-ALRLQFTEKLQRLGRSDLATS 182 L + K +W +++E QL + L AL + + R Sbjct: 437 MLSDVTPRKMSMCPNWGVRPITEEFQLT-IVEEAHCLLSALYQSLSNLIPVHLRGVFEDK 495 Query: 183 CCNFLMD 189 C L+ Sbjct: 496 CIEVLLA 502 >gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301] gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5 exonuclease [Shigella flexneri 2a str. 301] Length = 928 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 22/176 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A DTET L L + + G I +A +AP+ L Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAA--SDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA +DV L L+ LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEHADVT--LQLHLKMWPDLQK 518 >gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823] gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823] Length = 951 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 20/168 (11%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEKRE 76 ++ DTET + L + S + + + +K + E Sbjct: 378 KSVCFDTETTDINALHADLVGMSFSYKEREAYYVAVPKDKKEIQAIVDEFKPFFEHKSIE 437 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132 KI H ++DI VL P+F T IA L + + Q G+ + L ++I Sbjct: 438 KIAHNMKYDIQVLHRYGVQFAGPLFDTMIAHYLIQPESKQ-GMDFLAEYYLNYTPVSIET 496 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173 K Q + DL E + YA D L+ F ++++ Sbjct: 497 LIGKKGKGQG----NMGDLQPEAISDYACEDADITFQLKQLFAPQIEK 540 >gi|146098911|ref|XP_001468505.1| hypothetical protein [Leishmania infantum JPCM5] gi|134072873|emb|CAM71589.1| hypothetical protein, unknown function [Leishmania infantum JPCM5] Length = 548 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 13/159 (8%) Query: 18 RYVDAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKR 75 R++ + +D+E RD L +VQ + + I G+ + L D Sbjct: 10 RHLKIMGMDSE-----WFRDLPLAVVQFATSSHCFVLHISFFDGRILPAAVKEALCDPSI 64 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINI--S 132 K D++ L + ++ V + ++ Q LK K + ++I Sbjct: 65 IKCGVGVSGDVSRLQKEQNITIQSVLDVAQYSALFGLHQGAQSNLKVLAKSVANLSIEKD 124 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVV--HLHALRLQFTE 169 K S+W LSD ++ YAA D + +L + Sbjct: 125 KMITRSNWEL-PLSDSRVNYAAEDALASYLVGRAVMLKA 162 >gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] Length = 924 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + + I+ DTET L R RL V L+ G I + AP L Sbjct: 342 LQQAELISFDTETDALDAMRARLVGVSLAVEPGRAAYIPVGHDYPGAPAQLPMQQVLDAL 401 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 +L D ++K+ +G++D+ VL GV V+ T + S + + +H + Sbjct: 402 RPVLQDPAKKKLGQHGKYDLHVLRRH-GVDVQGYHDDTMLESFVLNSTATRHDMDSLALR 460 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 LG + K + + A + Q+ +YAA D L +L Sbjct: 461 YLGYSTIKFEDVAGKGAKQIPFSQVGIDEASRYAAEDADITLRLHRALQPQLLAE 515 >gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured Planctomycetales bacterium HF0500_02G17] Length = 987 Score = 58.9 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 78/213 (36%), Gaps = 37/213 (17%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPN------ 65 A AIAVDTET + P R +V LS PG G +R + + Sbjct: 372 ALEAAQAIAVDTETTAIRPMRAD--LVGLSFAVEPGSGWYVPVRSPEPETHLDEATVLGA 429 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-----------PVFCTKIASRLTRTYT 114 L +L D + K+ H ++DI VL GV +R P + IAS L Sbjct: 430 LRPVLEDATKPKLGHNLKYDILVLRRA-GVELRGHVSTVGAGDWPGGDSMIASYLVDASR 488 Query: 115 NQHGLKDNLKELL---GINIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 + H + LL I IS K Q++ D L YAA D L Sbjct: 489 SSHSMDALAMALLERRNIPISELIGTGKKQKTFD--TVPLDRA-TPYAAEDADVTLQLCQ 545 Query: 166 QFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 + +LQ + L + AEL+ G Sbjct: 546 RLLPELQEMELGALFGGLEMPLVDVLAELEWNG 578 >gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134] gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134] Length = 955 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 60/183 (32%), Gaps = 22/183 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVD 72 + D DTET L+ + L + + G + A QK A + D Sbjct: 359 LKQQDEFCFDTETTSLVAQDAELVGIAFATYAGEAYYVPTPADQKEAQAIVDEFKEVFED 418 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG--- 128 E KI ++D VL G+ + F T +A L + +H + K L Sbjct: 419 ESIGKIAQNLKYDWVVLKNY-GIEPKGKFFDTMLAHYLLQP-DMRHNMDVLAKSYLNYEP 476 Query: 129 INI--------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + I K D D +++ YA D L+ F +++ A Sbjct: 477 VEITSLIGKKGKKQGSMRDVELDKITE----YAGEDADITLQLKEIFDAQIKAQDLRHPA 532 Query: 181 TSC 183 Sbjct: 533 PED 535 >gi|71982768|ref|NP_001021323.1| hypothetical protein C10G6.1 [Caenorhabditis elegans] gi|14573791|gb|AAB00620.2| Hypothetical protein C10G6.1a [Caenorhabditis elegans] Length = 574 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 31/166 (18%) Query: 23 IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKREKIF 79 + VD E L L ++ + I +A+ G+L EK K+ Sbjct: 327 VGVDGEIFLS-------LGVI---ATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN-------LKE------- 125 H R ++L + + V +R VF T++A L + L + L+ Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHEKFNKSLNEMRPISFINLQRVYYPQSI 436 Query: 126 -LLGINISKAQQSSDWSADDLSDE-QLQYAASDVVHLH-ALRLQFT 168 L + K +W +++E QL + L AL + Sbjct: 437 MLSDVTPRKMSMCPNWGVRPITEEFQLT-IVEEAHCLLSALYQSLS 481 >gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] Length = 911 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 66/203 (32%), Gaps = 33/203 (16%) Query: 17 ARYVDAIAVDTETLGLMPR-----------RDR--LCIVQLSPGDGTVDIIRIAAGQKNA 63 A A A+D ET L + + ++ G D + Sbjct: 337 AISAGACALDIETDSLDAMLANPVGFSLAVSPKQAAYLPLIAEGQRKFDDDAVRE----- 391 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122 LV + I H ++D VL GV + + F T +A+ L T N +G+ Sbjct: 392 -RLVRLTSSPSVRIIGHNFKYDYKVLRRW-GVVTKNLAFDTMVAAWLLDTTANSYGMDPL 449 Query: 123 LKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 LLG + K D S + + +YAA D F +L+ G Sbjct: 450 AASLLGYKTISFKDVVPKDGLFQDISVETAT----RYAAEDADITFRFYELFRRQLKERG 505 Query: 176 RSDLATS-CCNFLMDRAELDLLG 197 L + AE++ G Sbjct: 506 LEKLFFELEMPLVPILAEMECAG 528 >gi|281420237|ref|ZP_06251236.1| 3'-5' exonuclease domain protein [Prevotella copri DSM 18205] gi|281405732|gb|EFB36412.1| 3'-5' exonuclease domain protein [Prevotella copri DSM 18205] Length = 205 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 17/164 (10%) Query: 23 IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + VDTE + ++Q+S D T + R+ P ++ +L D K+ Sbjct: 47 LGVDTETRPSFKRGQAYH--VSLLQVSTHD-TCYLFRLHHTGI-TPAIIRLLEDTTVPKV 102 Query: 79 ---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 +H D+ L + + ++ L+ L ISKAQ Sbjct: 103 GLSWHD---DLLQLHKRAAFKAGYFIELQDVAK--NFGIADMSLQKLYANLFHQKISKAQ 157 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + S+W A DL + Q YAA+D L +F ++L G +L Sbjct: 158 RLSNWEASDLKESQALYAATDAWCCINLYEEF-KRLSATGDYEL 200 >gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] Length = 936 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 24/183 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVD 72 + D DTET L P + +L + + G + I A +K A +L Sbjct: 358 LKLQDTFCFDTETTSLDPYQAQLVGISFAYYPGEAYYVPIPAERKAAQAIIEEFRPLLES 417 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---- 128 + K+ ++D +L P+F T +A L H + + L Sbjct: 418 TTQCKVGQNLKYDNLILRTYGIEVAPPIFDTMVAHYLV-APDKPHNMNAIAESYLNYAPI 476 Query: 129 -----INISKAQQSSDWSAD----DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 I K+ Q S +L E YA D L+ +++ S L Sbjct: 477 PIEALIGSRKSTQKS---MRMVDVELVKE---YACEDADITLQLKRLLELNIKQENLSKL 530 Query: 180 ATS 182 Sbjct: 531 FYE 533 >gi|123472408|ref|XP_001319398.1| HRDC domain containing protein [Trichomonas vaginalis G3] gi|121902180|gb|EAY07175.1| HRDC domain containing protein [Trichomonas vaginalis G3] Length = 442 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 20/159 (12%) Query: 28 ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD-- 85 E + C++ L + II + + L +L +++ KIF FD Sbjct: 184 EIHRVRTYIPFPCLIVLYSPYVGIFIIDLLKLRCCTGILSELLYNKEIIKIF----FDKE 239 Query: 86 -IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144 ++ + G+ V P L T + +H K L + DW Sbjct: 240 LFKIMHESLGIYVYPYVD----LSLVNTQSLEHIFKQEFDGLCVV---------DWRIRP 286 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 +DE + A V L + ++ L + + ++ Sbjct: 287 FTDELINIAVRRVNVLPKITIKSKIDLNIINKMNVHEKE 325 >gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1] gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1] Length = 941 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 57/179 (31%), Gaps = 27/179 (15%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------------- 65 IAVDTET + P R L V LS G I +A + Sbjct: 357 ACGRIAVDTETDNVDPVRANLVGVSLSTAPGKACYIPLAHIGDGLLSETPRQIAMDAALA 416 Query: 66 -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L KI ++D+ VL GV V P T + S HG+ + + Sbjct: 417 KLKPLLEAAHILKIGQNIKYDMVVLAKY-GVDVAPYDDTMLLSYDLDAGLGGHGMDELAQ 475 Query: 125 ELLGIN---------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L K+Q S D L +YAA D L +L Sbjct: 476 RHLDHGCIEFKTVCGTGKSQISFD--KVTLDVA-TEYAAEDADVTLRLWQLLKGRLAPE 531 >gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] Length = 908 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 19/196 (9%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGCYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 LGINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L K + Q +D + ++S E Y++ D L FT+KL+ L Sbjct: 452 LMHKNIKYEDVIQKND-NFANISLEMATSYSSEDADITFRLFNLFTKKLKEDKLDRLMHE 510 Query: 183 -CCNFLMDRAELDLLG 197 F E++ G Sbjct: 511 IEMPFNKVIIEMEENG 526 >gi|170084825|ref|XP_001873636.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651188|gb|EDR15428.1| predicted protein [Laccaria bicolor S238N-H82] Length = 398 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 21/182 (11%) Query: 4 IRVHEGDIPA-ECAARYVDAIAVDTE----TL---GLMPRRDRLCIVQLSPGDGTVDIIR 55 + + + ++ E + A D E + G P + +VQL+ D T+ +++ Sbjct: 34 LYIQDAELANKELSILTPGAFGFDLEWKPNFVKGEGENP----VALVQLAN-DETILLLQ 88 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----- 110 I+A ++ L +L K+ + D L+ V + +R Sbjct: 89 ISAMKEFPTKLEEILGSSDFLKVGVAIQHDTQKLYKDHQVSTYNCVDLSLLARSIDNDRW 148 Query: 111 -RTYTNQHGLKDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 Y + GL ++ + K + S+W L D Q YAA+D + + + Sbjct: 149 KGKYNSSLGLARVIESYEYRLLGKGKISRSNWEGQ-LRDPQQLYAANDAHAGYTIYRRLI 207 Query: 169 EK 170 Sbjct: 208 AM 209 >gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] Length = 939 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 65/209 (31%), Gaps = 31/209 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-------VDIIRIAAGQKNAPN---- 65 D A+DTET L ++ V + + + + AP Sbjct: 349 LEASDVFAIDTETTSLNAMEAKIVGVSFAYAEKKDQAWQNFAAYVPLTHDYDGAPEQLPI 408 Query: 66 ------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHG 118 L +L + +K+ ++D + G+ V+ + + T + S + +H Sbjct: 409 QEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNA-GIEVQGMAYDTMLESYCFNSVATRHN 467 Query: 119 LKDNLKELLGIN--ISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEK 170 + D L + K + + Q++ YAA D L K Sbjct: 468 MDDLALTYLNHSTIHFKDIAGT--GKKQKTFNQIELETASPYAAEDADITLQLHQTLLPK 525 Query: 171 LQRL-GRSDLATS-CCNFLMDRAELDLLG 197 LQ + + A+++ G Sbjct: 526 LQAEPTLYKVFEEIEMPLMPVLAKMERNG 554 >gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] Length = 954 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 41/197 (20%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------- 57 + + +AVDTET L + L + +G I +A Sbjct: 351 LQMAELVAVDTETDNLDAMQANLVGISFGLENGEACYIPLAHKGKITQPTQVDLFGESEA 410 Query: 58 ---AGQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103 + PN L +L + KI ++D+ + G+ ++ V F T Sbjct: 411 ELDEVEALLPNQLNKADCLVQLKPILENPNIRKIGQNIKYDLTIFARN-GIELQGVAFDT 469 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157 + S + T +H + + + LG ++ + L+ +Q+ +YA D Sbjct: 470 MLQSYTLDS-TGRHNMDNLAERYLGHQTIPFEELAGKGKHQLTFDQIELDKATEYAGEDA 528 Query: 158 VHLHALRLQFTEKLQRL 174 L +LQ+ Sbjct: 529 EITMKLHQLLWSELQKT 545 >gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886] gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886] Length = 931 Score = 58.5 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + D +A DTET L L + + +G + +A +AP + Sbjct: 348 LKNADVVAFDTETDSLDYMEANLVGISFAVAEGEAAYLPLAHDYLDAPKQLDRDWVLAEM 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 L D K+ ++D +VL + +R + + T + S + + +H + Sbjct: 408 KLWLEDAGALKVGQNLKYDASVLARY-DIAMRGIAYDTMLESYVFNSVAGKHDMDSLALR 466 Query: 126 LLGINISKAQQSSDW------SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L Q + L+ Q++ YAA D L +L Sbjct: 467 YL------QHQCISFEEIAGKGKKQLTFNQIELDQAAPYAAEDADVTLRLHNALMAQLNN 520 Query: 174 LGRSDLA--TSCCNFLMDRAELDLLG 197 + + + + ++ G Sbjct: 521 DEKLKVIFEQYEMPLVPVLSRMERHG 546 >gi|195328899|ref|XP_002031149.1| GM25820 [Drosophila sechellia] gi|194120092|gb|EDW42135.1| GM25820 [Drosophila sechellia] Length = 355 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 R IA+D E C+VQ+S I + + L +L D K+ Sbjct: 287 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDDMHILNLVLTDPKKL 345 Query: 77 KIFHY 81 KI H Sbjct: 346 KILHG 350 >gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220] gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220] Length = 928 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRDRALALL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE K+ ++D +L + +R + F T + S + + +H + Sbjct: 406 KPLLEDENAHKVGQNLKYDRGILANY-DIELRGIVFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQK 518 >gi|255320255|ref|ZP_05361440.1| 3'-5' exonuclease [Acinetobacter radioresistens SK82] gi|255302694|gb|EET81926.1| 3'-5' exonuclease [Acinetobacter radioresistens SK82] Length = 218 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 11/134 (8%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ + V + ++ N L +L ++K+ K+ + D+ LF G+ ++ Sbjct: 73 LIQLATAE-KVFLFQLNPDILN--FLKPILANQKQVKVGFGLKNDV-HLFRKKGIELQS- 127 Query: 101 FCTKIASRL--TRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASD 156 T S+ + GLK+ + L N K SDWS LS Q+ YAA+D Sbjct: 128 --TVELSKCFSAFGFKQPIGLKNAVALLFQQNFPKFKKISISDWSNMRLSSTQIGYAAAD 185 Query: 157 VVHLHALRLQFTEK 170 V + + ++ Sbjct: 186 VYAALLVFQELRKR 199 >gi|157135976|ref|XP_001663646.1| hypothetical protein AaeL_AAEL013455 [Aedes aegypti] gi|108870061|gb|EAT34286.1| conserved hypothetical protein [Aedes aegypti] Length = 339 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 15/193 (7%) Query: 2 TTIRVHEGDI---PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 I V + DI A R +A+ E + ++ ++ D Sbjct: 104 NHIFVFQTDIKYHDAIKYLRTQRLLAIGMEGIEGGRHSTSPSLLSIATPDRIYVFD--VM 161 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRPVFCTKIAS-RLTRTYTN 115 +L +L D K ++ H R D VL + + + F T +A T Y + Sbjct: 162 WMNVPKDLRAILGDPKVRRVAHNARLVED--VLRHRYQAPLGKCFDTLVAHISTTNDYDD 219 Query: 116 QHGL--KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 QH L ++ L + L + + S ++ L++ Q + AA +V L AL+ ++ Sbjct: 220 QHELSIQECLAKYLNLPSNFFDSSIKFNNRPLNESQRKAAAKNVAFLLALQDYLVHEVML 279 Query: 174 LGRSDLATSCCNF 186 SCC + Sbjct: 280 E---PFYHSCCQY 289 >gi|119482642|ref|XP_001261349.1| 3'-5' exonuclease/helicase (Wrn), putative [Neosartorya fischeri NRRL 181] gi|119409504|gb|EAW19452.1| 3'-5' exonuclease/helicase (Wrn), putative [Neosartorya fischeri NRRL 181] Length = 383 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 26/183 (14%) Query: 39 LCIVQLSPGDGTVD----IIRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDIAVLFYT 92 + ++Q++ + + + A ++ +P+L +L K K + D L Sbjct: 174 VSLIQIANAERIALFQIALFKPARTPEDFISPSLRKILESPKITKAGVAIKADCTRLKNF 233 Query: 93 FGVRVRPVFCTKIASRLTRT--------YTNQHGLKDNLKELLGINISKAQ--QSSDWSA 142 G+ VR +F +L + L + ++E G+ ++K + DWS Sbjct: 234 LGINVRGIFELSHLYKLVKYCQSDPALINRRPVNLSEQVEEHFGLPLAKDDDVRCGDWST 293 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD--LLGWEN 200 L+ Q+QYAA+D L K + A + L AELD + E Sbjct: 294 A-LNYRQVQYAANDSYACLCLFNTMDAKRR-------ALTPMPPLPAHAELDQPIRLVEE 345 Query: 201 VDI 203 +D+ Sbjct: 346 LDV 348 >gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a] Length = 908 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 19/196 (9%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 LGINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L K + Q +D + ++S E Y++ D L FT+KL+ L Sbjct: 452 LMHKNIKYEDVIQKND-NFANISLEMATSYSSEDADITFRLFNLFTKKLKEDKLDRLMHE 510 Query: 183 -CCNFLMDRAELDLLG 197 F E++ G Sbjct: 511 IEMPFNKVIIEMEENG 526 >gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40] gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40] Length = 926 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L ++ V + G + AP L Sbjct: 344 LSKAELFAFDTETTSLNYMEAKVVGVSFAVAPGEAAYVPFGHDYLGAPEQLSEEQVLGKL 403 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE +K+ ++D +VL G+ ++ + F T + S + + N+H + Sbjct: 404 KPLLEDENVKKVGQNLKYDASVLANH-GIALQGIAFDTMLESYVVNSTANRHDMDTLALA 462 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 LG ++ + A L+ Q+Q YAA D L +++ Sbjct: 463 HLGHTNISFEEIAGKGAKQLTFNQIQLDQAAPYAAEDADITLRLHQALWPQVEA 516 >gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70] gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70] Length = 930 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 13/123 (10%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVG 68 IA+DTET L L V + +G + + AP L Sbjct: 352 QAKCIAIDTETDSLDYMVAHLVGVSFALENGEAAYLPLRHDYLGAPQQVDFQTALSLLKP 411 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + + K+ ++D+++ G+ V+ V + T + S + + T +H + + K L Sbjct: 412 VLENPEIHKVGQNIKYDLSIFARH-GIEVQGVSYDTMLLSYVLDS-TGRHNMDELAKRYL 469 Query: 128 GIN 130 G Sbjct: 470 GHQ 472 >gi|313221140|emb|CBY31966.1| unnamed protein product [Oikopleura dioica] gi|313234849|emb|CBY24793.1| unnamed protein product [Oikopleura dioica] Length = 581 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 31/191 (16%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPN-------LVGM 69 + VD E L P ++ ++Q+ + +A G + L + Sbjct: 274 RSKYLLVDMEGDQLGP-NGKITLLQINNYTSGNCYLLDILAVGDSSLRERDPQIGWLRDI 332 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS--------RLTRTYTNQ----- 116 + K F G D A LF ++ + V ++ +LT + Sbjct: 333 FQYPRVIKFFWGGVSDTANLFASYEISVAGFIDLQVVESQYRQRLIKLTNGQQDPTKKHP 392 Query: 117 HGLKDNLKELLGINI-----SKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFT 168 GL+ + ++ KA+ +D WS L+ + L+YAA DV L + F Sbjct: 393 LGLEAAYEYFTDKSLIRYKQGKAKHKTDYHVWSRRPLTSQLLKYAAFDVAALRPIVHVFV 452 Query: 169 EKLQRLGRSDL 179 L+ Sbjct: 453 NNLELWRWGAW 463 >gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354] Length = 955 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 34/185 (18%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-----GQKN--------------A 63 +AVDTET L + L V L+ G I + G + Sbjct: 359 VAVDTETSALDAMQADLVGVSLAIGPNQACYIPLGHFNEGGGGDDMFAEKPQQIETEVAL 418 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI------ASRLTRTYTNQH 117 L +L + K+ ++D+ VL G+ V P+ T I A R H Sbjct: 419 AKLKPLLESDAVVKVGQNIKYDLNVLARH-GIAVAPIEDTMIVSFALDAGRSQDGIGGGH 477 Query: 118 GLKDNLKELLGIN-IS-K-----AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 G+ + + LG ++ K +++ + + +YAA D L + Sbjct: 478 GMDELAQRHLGHTCLTFKEICGTGKKAIPFGEVPIDRA-TEYAAEDADVTSRLYTHLKPR 536 Query: 171 LQRLG 175 L G Sbjct: 537 LAVEG 541 >gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107] gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107] Length = 998 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 57/179 (31%), Gaps = 30/179 (16%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------------- 68 IA+DTET L P + L V + G+ + I G K L Sbjct: 399 PIAIDTETTDLNPFKAELVGVGVCWGEANDALAYIPIGHKPPSELTEATPPQQLPLETVL 458 Query: 69 -----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 L + K ++D +L V T +A R +HGL Sbjct: 459 MALSPWLASPQHPKALQNAKYDRLILLRHGLTLNGVVIDTLLA-DYLRDAAAKHGLDVMS 517 Query: 124 KELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + G + K Q +D + S Y DV L LQ + LQ +G Sbjct: 518 EREFGFRPTTYGDLVGKKQTFADVEIEPAS----LYCGMDVHVTRRLALQLRQTLQAMG 572 >gi|298705697|emb|CBJ28935.1| similar to Werner syndrome protein [Ectocarpus siliculosus] gi|299115153|emb|CBN75519.1| similar to Werner syndrome protein [Ectocarpus siliculosus] Length = 727 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 14/150 (9%) Query: 11 IPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-- 65 + C + + + +D E +L + VQLS DGT ++ G K + Sbjct: 104 LTDGCQLQG-NVLGLDCEWEPSLAGTTPNP-VSTVQLSLPDGTAYCFQLQRGNKKTTSSN 161 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L +L + K+ D L +G+ V + +R T L Sbjct: 162 FPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETPSRSLAG 221 Query: 122 NLKELLGINISKA--QQSSDWSADDLSDEQ 149 LLG + K +SS WS+ LSD Q Sbjct: 222 MASSLLGRQLPKDPVIRSSRWSS-PLSDNQ 250 >gi|109080718|ref|XP_001099755.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 1 [Macaca mulatta] Length = 514 Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 25/144 (17%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGR--FDIAVLFYTF 93 +LC +Q++ + V + I A N L +L D++ K+ H R D L + + Sbjct: 115 KLCWLQVAT-NCRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQY 171 Query: 94 GVRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS--- 137 G+ + VF T++A S T Y L+++L + L + + K Q+ Sbjct: 172 GILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVAPKYLSFLEKRQKLIQE 231 Query: 138 --SDWSADDLSDEQLQYAASDVVH 159 W +S L+ A + + Sbjct: 232 NPEVWFIRPVSPSLLKILALEATY 255 >gi|145354761|ref|XP_001421645.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581883|gb|ABO99938.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 389 Score = 58.1 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 7/131 (5%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 +VQL+ G V + + + P L + D + + D+ + + FG + R Sbjct: 91 LVQLANERGCVLVHLASMRGETPPTLRALCEDAGSIFVGNGVWSDMRDVDWAFGTKSRGY 150 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKEL-LGINISKAQQSSDWSADDLSDEQLQYAASDV-- 157 + ++ ++HGLK K+ Q+S+W L +Q+ Y A D Sbjct: 151 VDVGVIAQ--TFGHSRHGLKAMSARYGYDAEKPKSVQTSNWEKSPLEAKQIDYGAKDAAL 208 Query: 158 --VHLHALRLQ 166 L L + Sbjct: 209 GLWVLKQLYAE 219 >gi|302812014|ref|XP_002987695.1| hypothetical protein SELMODRAFT_126531 [Selaginella moellendorffii] gi|300144587|gb|EFJ11270.1| hypothetical protein SELMODRAFT_126531 [Selaginella moellendorffii] Length = 184 Score = 58.1 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 18/168 (10%) Query: 13 AECAARYVDAI-AVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 R ++ VD E +G +++ ++Q+ G+ I+++ + L Sbjct: 19 ESWVLRQDGSVFGVDLEWKPNRVMGEE---NKVALIQIC-GETECLIVQMCYIDQIPDAL 74 Query: 67 VGMLVDEKREKIFHYG---RFDIAVLFYTFGVRVRPVFCTKIAS--RLTRTYTNQHGLKD 121 V L + K G + D L G+ + + + +L GLK Sbjct: 75 VEFLKNSSS-KAMFGGVGVKNDAEKLERDHGLVCKGTVELGVLATEKLGNQQLRNQGLKK 133 Query: 122 NLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 ++G+ + K S+W LSD Q+ YA D +A+ + Sbjct: 134 MASIVIGLGMDKPKRVTMSNWENLHLSDAQVNYACVDAWVSYAILQKL 181 >gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451] gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451] Length = 938 Score = 58.1 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L V + +G I +A +AP L Sbjct: 355 LQQAELFAFDTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQL 414 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 415 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 473 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + + +++ + Sbjct: 474 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQ 533 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 534 VYREIEMPLVPVLSRIERTG 553 >gi|119902351|ref|XP_874985.2| PREDICTED: hypothetical protein [Bos taurus] gi|297479522|ref|XP_002690868.1| PREDICTED: hypothetical protein [Bos taurus] gi|296483301|gb|DAA25416.1| hypothetical protein BOS_10707 [Bos taurus] Length = 662 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 25/144 (17%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 264 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILKVIHDCRWLSD--CLSHQYG 321 Query: 95 VRVRPVFCTKIASRL-----TRTYTNQH--GLKDNLKELLGINISKAQQSSD-------- 139 + + VF T++A L T + L+++L L I K + Sbjct: 322 ILLNNVFDTQVADVLQFSVETGGFLPNCISTLQESLIRHLKIA-PKHLSFLEVRQKWIRE 380 Query: 140 ----WSADDLSDEQLQYAASDVVH 159 W LS L+ A + + Sbjct: 381 NPELWFTRPLSPSLLKILALEATY 404 >gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116] gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116] Length = 907 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 15/193 (7%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVGM 69 + I++DTET L +L + +S + I I A + Sbjct: 336 LKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKVYIEKHYIIQKFNNL 395 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + + I +FD +L + P F T IA+ L T + + L ++ L Sbjct: 396 FKSKPKI-IGQNYKFDYKILKNNGFDPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYLMH 453 Query: 130 NISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K + Q +D + +S E Y++ D L F EKL+ G L Sbjct: 454 KNIKYEDVIQKND-NFAHISLEMATSYSSEDADITFRLFNVFNEKLKEDGLDKLMYEIEM 512 Query: 185 NFLMDRAELDLLG 197 F E++ G Sbjct: 513 PFNRVIIEMEENG 525 >gi|168037523|ref|XP_001771253.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677494|gb|EDQ63964.1| predicted protein [Physcomitrella patens subsp. patens] Length = 188 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 19/141 (13%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF-------DIAVLF 90 ++ ++Q+ G+ I+++ LV L D +F D L Sbjct: 54 KIALLQIC-GEDDCLIVQMLYLDSIPTELVNFLKDPSI-------KFPGVGIKGDALKLK 105 Query: 91 YTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLS 146 +G+ T AS L R GLK K ++ ++ K S+W+ L Sbjct: 106 RDWGLECNGAIDLTTLAASVLGRPELKAAGLKSLAKVVMDYDMAKPKRVTMSNWAKPILD 165 Query: 147 DEQLQYAASDVVHLHALRLQF 167 Q++YA+ D +A+ + Sbjct: 166 KVQVEYASLDAWVSYAIHQKL 186 >gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573] gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573] Length = 938 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L V + +G I +A +AP L Sbjct: 355 LQQAELFAFDTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRDWVIAQL 414 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 415 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 473 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + + +++ + Sbjct: 474 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQ 533 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 534 VYREIEMPLVPVLSRIERTG 553 >gi|320165962|gb|EFW42861.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 1379 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 27/191 (14%) Query: 28 ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA 87 E G + ++Q+S + + R G L+ +L D K+ D+ Sbjct: 794 EFNG-------VAVMQISTEEACLLYQRNGPGA-LPSQLLRLLTDTSVLKVGVGVADDLK 845 Query: 88 VLFYTFGVRVRPVFCTKI--A------SRLT-RTYTNQHGLKDNLKELLGINISKAQQ-- 136 + FG + T+ A SRL + Q GLK G+ ++K+++ Sbjct: 846 RVQRAFG-LPKQ---TQFEPAVELGTWSRLVFKDLPTQPGLKSLAA-YCGVALNKSKRIT 900 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR--SDLATSCCNFLMDRAELD 194 S W+ LS QL YA D + + L R + ++L + N + +LD Sbjct: 901 MSAWNRIPLSTNQLIYAVQDAWISFFIFARLFV-LSRNNKAVTELKRTMYNGRLMGFDLD 959 Query: 195 LLGWENVDIFS 205 ++N FS Sbjct: 960 SNLFKNARAFS 970 Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 21/150 (14%) Query: 23 IAVDTETLGLMP-RRDR----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 I +D E P + + + ++QL+ + + + L +L + K Sbjct: 335 IGLDLE---WHPEFQAKQFNGVSLIQLAT-ETKCLLYHQPRVESLPSELAKLLANRAVLK 390 Query: 78 IFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130 + D+A L V + +F + + +++ GL+ G+ Sbjct: 391 VGIGISNDLARLRRACINSGHVHLESIFD--LGALSLLVFSDLRGAPGLRSLATR-CGLA 447 Query: 131 ISKAQQ--SSDWSADDLSDEQLQYAASDVV 158 I+KA+Q S W L+ QL YA D Sbjct: 448 INKAKQVSMSAWDRIPLNHTQLVYAVQDAW 477 >gi|302802887|ref|XP_002983197.1| hypothetical protein SELMODRAFT_118004 [Selaginella moellendorffii] gi|300148882|gb|EFJ15539.1| hypothetical protein SELMODRAFT_118004 [Selaginella moellendorffii] Length = 184 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 18/168 (10%) Query: 13 AECAARYVDAI-AVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 R ++ VD E +G +++ ++Q+ G+ I+++ + L Sbjct: 19 ESWVLRQEGSVFGVDLEWKPNRVMGEE---NKVALIQIC-GETECLIVQMCYIDQIPDAL 74 Query: 67 VGMLVDEKREKIFHYG---RFDIAVLFYTFGVRVRPVFCTKIAS--RLTRTYTNQHGLKD 121 V L + K G + D L G+ + + + +L GLK Sbjct: 75 VEFLKNSSS-KAMFGGVGVKNDAEKLERDHGLVCKGTVELGVLATEKLGNQRLRNQGLKK 133 Query: 122 NLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 ++G+ + K S+W LSD Q+ YA D +A+ + Sbjct: 134 MASIVIGLGMDKPKRVTMSNWENLHLSDAQVNYACVDAWVSYAILQKL 181 >gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] Length = 971 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 32/212 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------ 64 AR +A DTET L + L V ++ G + + +A Sbjct: 373 ARDRGVMAFDTETSELSAYKGHLVGVSMAITPGEAAYVPLGHVAADADLLTDPDSAEALG 432 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT-- 112 L +L D+ KI ++D+ V+ G+ + P+ T + S Sbjct: 433 GQIPMDEALVALKDVLEDKSILKIGQNVKYDLLVMLQH-GIAMTPIDDTMLISYALDASS 491 Query: 113 YTNQHGLKDNLKELLGIN-IS-KAQQSSDWSADDLSDEQL----QYAASDVVHLHALRLQ 166 HG+ + + LG IS K S SA ++ ++ +YA+ D + Sbjct: 492 GLAGHGMDELSERFLGHKPISYKELCGSGRSAKPIAAVEIDRVTEYASEDADVTLRIWQV 551 Query: 167 FTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 +L G + + A ++ G Sbjct: 552 LKPRLAAEGLAHVYERLERPLAPVLARMEQRG 583 >gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] Length = 928 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 23/175 (13%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVG 68 +A DTET L PR +L + + V + + +L Sbjct: 354 LLACSGIVAWDTETTSLDPRDAQLVGIGCCWSERDVAYLPLGHRQGSNLDWDLVKQSLQP 413 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 + D R K ++D+++ +R++ + F +AS + H L D L Sbjct: 414 IWEDPNRPKSLQNCKYDLSIF-RAHSIRLQGIQFDPMLASYVLNPEA-SHNLADLAASYL 471 Query: 128 GIN-------ISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL 174 + + KA+ +D L ++ +Y +D + L TEKLQ+ Sbjct: 472 NLPTTSYEKLLGKAESLAD-----LPIAKVAEYCGTDAYCAYRLVPILTEKLQQT 521 >gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC BAA-286] Length = 931 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 70/194 (36%), Gaps = 31/194 (15%) Query: 3 TIRVHEGDIPAECAARYVDAIA------VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56 T + E D + A IA DTET GL P L + + +G + + Sbjct: 338 TYHLVEKD---DEIANLAKTIASQQSCCFDTETTGLDPNVSELVGMSFAFREGEAYYVPV 394 Query: 57 AAGQKNA----PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTR 111 A + A + + EKI ++DI VL G+ VR +F T IA L Sbjct: 395 PADFEKAKAIVEQFRPFFENGETEKIGQNIKYDIIVLKKY-GIHVRGRLFDTMIAHYLIN 453 Query: 112 TYTNQHGLKDNLKELLG---INIS-------KAQQSSDWSADDLSDEQL-QYAASDVVHL 160 +H + + L I+I K Q + L +Q+ YA D Sbjct: 454 PEL-RHNMDYMAETYLKYKTIHIDELIGSRGKNQL----NMRSLRPDQIKDYACEDADIT 508 Query: 161 HALRLQFTEKLQRL 174 L+ + +++ Sbjct: 509 LKLKAILEKAIEKQ 522 >gi|255632121|gb|ACU16413.1| unknown [Glycine max] Length = 208 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 4/143 (2%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 A + +DTE + ++ I+QL + II++ +L L+D E Sbjct: 52 AGKQRIVGLDTEWTTAKKPKMKVAILQLCI-ENKCLIIQLFHMDNIPQSLRSFLMDSNFE 110 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-LKDNLKELLGINISKAQ 135 + D+ +L +G+ + ++ + G LK KEL+G+ + K++ Sbjct: 111 FVGVGVINDLRMLKNDYGLECNKGIDVSLLAKEKWPHRISSGALKYLAKELVGLEMEKSK 170 Query: 136 Q--SSDWSADDLSDEQLQYAASD 156 +S+W + +L+ Q++YA D Sbjct: 171 AVCTSEWQSKELTQTQIEYACID 193 >gi|255953481|ref|XP_002567493.1| Pc21g04470 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589204|emb|CAP95344.1| Pc21g04470 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1240 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 21/172 (12%) Query: 19 YVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVD----IIRIAAGQKNA--PNLVG 68 I D E L + + ++Q++ + + + A ++ P+L Sbjct: 1034 GSKVIGFDMEWKAQASSLDSIQSNVSVIQIANEERIALFQIALFKPARSLEDLVSPSLKR 1093 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--------QHGLK 120 ++ K+ + D L G+ + F +L + + L Sbjct: 1094 LVESPDVTKVGVSIKADCTRLRKYLGIDAKATFELSHLYKLVKYGKDNPNLVNKRGVNLS 1153 Query: 121 DNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + + E G+ + K+ + DW LS Q+QYAA+D L K Sbjct: 1154 EQINEHFGLPLEKSDDVRCGDW-TRALSYRQVQYAATDPYACVRLFHAMEAK 1204 >gi|170033361|ref|XP_001844546.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167874284|gb|EDS37667.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 342 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 15/138 (10%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVR 98 ++ ++ D + I I +L +L + + ++ H GR D VL + FG + Sbjct: 157 LLSIATPD-RIFIFDI-MWMSVTKDLKAILANPRIRRVIHNGRLAED--VLKHRFGAPLG 212 Query: 99 PVFCT---KIASRLTRTYTNQHGLKDNLKELLGIN---ISKAQQSSDWSADDLSDEQLQY 152 F T IA+ Y ++ ++ L + L + +D L++ Q + Sbjct: 213 RCFDTLVAHIATTKNYDYQSEISVEKCLAKYLNLPGNFFDPNITFAD---RPLTEPQRKA 269 Query: 153 AASDVVHLHALRLQFTEK 170 AA +V L L+ F + Sbjct: 270 AAKNVAFLLTLQDYFVHE 287 >gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4] gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4] Length = 930 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 18/166 (10%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75 DTET L ++ + + G + +A +AP L +L D Sbjct: 356 DTETTSLNYMEAKMVGLSFAIEPGKAAYLPLAHDYADAPEQLDSEQVLAKLKPLLEDPSL 415 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+ ++D+++L G+ ++ V F T + S + + ++H + D + LG Sbjct: 416 LKVGQNLKYDMSILAN-VGIALKGVAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISF 474 Query: 135 QQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 ++ + L+ Q+ YAA D L +LQ+ Sbjct: 475 EEIAGKGVKQLTFNQIPLETAAPYAAEDADITLRLHQHLWPRLQKA 520 >gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] Length = 887 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + + +AP L Sbjct: 304 LKQAEVFAFDTETDSLDYMVANLVGLSFAVAEGEAAYVPVGHDYLDAPQQLDRDWVLAQL 363 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L + + K+ ++D +V+ G+ +R + T +AS + + + + Sbjct: 364 KPLLENPQLAKVGQNLKYDASVVARY-GITMRGIAHDTMLASYVYNSVGGKQDMDSLALR 422 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + +Q + + L+ Q+ YAA D L + L+ Sbjct: 423 FLQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLQALLEA 476 >gi|313216815|emb|CBY38052.1| unnamed protein product [Oikopleura dioica] Length = 680 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 42/130 (32%) Query: 65 NLVGMLVDEKREK------------------IFHYGR---FDIAVLFYTFGVRVRPVFCT 103 L+ L DE K IFH FD+ Sbjct: 78 ELMAFLRDEDVVKLGCGIDGDFKRLSEVDFVIFHPATISFFDLR---------------- 121 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLH 161 +I + T GL + +++LG ++K + S+W AD LS+EQ YAA D V Sbjct: 122 QI---IPATNYQNGGLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAVCAL 178 Query: 162 ALRLQFTEKL 171 + + ++L Sbjct: 179 QILGKLIQEL 188 >gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] Length = 985 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 31/192 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63 A +A DTET + P + L + L+PG ++ +G + Sbjct: 392 AVETGLLAFDTETTSVDPMQAELVGFSL-ALAPGRAAYIPLQHKSGAGDLLGGGTVEGQI 450 Query: 64 ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 L +L D KI ++D ++ G+ T + S + T H Sbjct: 451 PLGEALAALKTVLEDASVLKIAQNMKYDWLIMRRY-GINTVSFDDTMLISYVLDAGTGSH 509 Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169 G+ + LG K S ++ + + YAA D L Sbjct: 510 GMDPLSERWLGHTPIAYKDVAGS--GKSSVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 567 Query: 170 KLQRLGRSDLAT 181 +L G + Sbjct: 568 RLAAEGLMSVYE 579 >gi|317034362|ref|XP_001396222.2| hypothetical protein ANI_1_558114 [Aspergillus niger CBS 513.88] Length = 309 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 26/177 (14%) Query: 36 RDRLCIVQLSPGDGTVD----IIRIAAGQKNA--PNLVGMLVDEKREKIFHYGRFDIAVL 89 +D + ++Q++ + + R + P+L ++ K+ + D L Sbjct: 120 QDNVSLIQIANRERIALFHVALFRPGRKISDLVPPSLKQIIESPDITKLGVSIKADCTRL 179 Query: 90 FYTFGVRVRPVFCTKIASRLTRT--------YTNQHGLKDNLKELLGINISKAQ--QSSD 139 V +F +L + L + ++E LG+ + KA+ + SD Sbjct: 180 RKYLKVDAHGIFELSHLHKLVKYCQTNPKLINKRPVNLSEQVEEHLGLPLEKAEDVRCSD 239 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFLMDRAELDL 195 W+ LS Q+QYAASD L K + L R L A+LDL Sbjct: 240 WTV-SLSYRQVQYAASDSYACICLFDTMDAKRKALDPRPP--------LPAHADLDL 287 >gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b] gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b] Length = 928 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D A D ET L + + + G + +A +AP+ L Sbjct: 345 LKKSDVFAFDLETDSLDTLSANIVGLAFAVAPGEAAYLPVAHDYLDAPDQLDRAAVLAQL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D K K+ ++D VL + + + + T + S + +H + Sbjct: 405 KPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIKYDTMLESYCLNSVGGKHDMDSLAAR 463 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 L ++ + + L+ Q+ YAA D L L+ +L++ Sbjct: 464 WLNHKTVTFEEIAGKGKNQLTFNQIAIEQAGHYAAEDADVTLQLHLKMWPELEKE 518 >gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069] gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069] Length = 915 Score = 58.1 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 V+ A DTET L L + + +G + +A AP L Sbjct: 334 LEEVELFAFDTETTSLNYIEAELVGMSFALDNGEAAYLPVAHSYMGAPEQLERDEVLKQL 393 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L EK +K+ ++D++VL + + + F T + S + ++H + Sbjct: 394 KPLLESEKHKKVGQNLKYDMSVLANY-DIELAGIEFDTMLESYCLNSVASRHDMDTLALH 452 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L K ++ + + L+ +Q++ YA+ D L + +L++ Sbjct: 453 HLNHVNIKFEEIAGKGKNQLTFDQIEVEQAAPYASEDADITMRLHQKLWPELKQ 506 >gi|242044098|ref|XP_002459920.1| hypothetical protein SORBIDRAFT_02g015821 [Sorghum bicolor] gi|241923297|gb|EER96441.1| hypothetical protein SORBIDRAFT_02g015821 [Sorghum bicolor] Length = 455 Score = 58.1 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 13/156 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE R ++ ++Q+ G + ++ +L L DE + Sbjct: 277 VGLDTE--WFESDRKKIALIQICVGK-KCLLFKVGRAGTIPDDLKSFLADENHVFVGVAI 333 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELLGINIS-KA-- 134 D+ L+ + + ++ + + +H L + LLG+ + K Sbjct: 334 ANDLDRLWEGHQIELSNK--VELQAMVPFIIPGKHWDNVPSLATLAQVLLGVCVEGKGTT 391 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + DW + L+D Q+QYA +DVV + + + Sbjct: 392 LRYKDWDNELLTDSQIQYACTDVVVPYMIGDMLQNE 427 >gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586] gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586] Length = 938 Score = 58.1 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L V + +G I +A +AP L Sbjct: 355 LQQAELFAFDTETDSLDYMVANLVGVSCAVAEGEAAYIPVAHDYLDAPQQLDREWVIAQL 414 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 415 KPLLEDESKAKVGQNLKYDASVIARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 473 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + + +++ + + Sbjct: 474 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQ 533 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 534 VYREIEMPLVPVLSRIERTG 553 >gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366] gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366] Length = 939 Score = 58.1 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 20/179 (11%) Query: 19 YVDAIAVDTETLGLMPRRDRL-CI-VQLSPGDGTVDIIR--IAAGQKNAPNLVGMLVDEK 74 ++I+ DTET G L + + PG+G + + A Q+ +L +E Sbjct: 364 KQESISFDTETTGTDANLAELVGLSFSIKPGEGYYIPVPAEMEAAQQIVEEFRPVLENEN 423 Query: 75 REKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG----- 128 KI ++D+ +L +G+ V+ +F T +A L T +H + + L Sbjct: 424 IVKIGQNIKYDMLIL-KWYGISVKGRLFDTMLAHYLIDPDT-RHNMDVLSENYLNYSPIS 481 Query: 129 ----INISKAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 I Q + D+ ++ + YAA D L F L++L LAT Sbjct: 482 ITTLIGPKGKSQGT---MRDVPVEKVVDYAAEDADITLQLANVFEPLLKQLNAEKLATE 537 >gi|323456411|gb|EGB12278.1| hypothetical protein AURANDRAFT_61313 [Aureococcus anophagefferens] Length = 701 Score = 58.1 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWS--ADDLSDEQLQYAASDVVHLHALRLQF 167 R Y L LLG+ + K Q S W A L D + YAA D L Sbjct: 438 LRDYAGSSSLSGLAGALLGVRLDKRLQCSAWGVGARPLPDAWVAYAALDAYVCVLLHDSL 497 Query: 168 TEK 170 ++ Sbjct: 498 ADR 500 >gi|322502531|emb|CBZ37614.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 548 Score = 58.1 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 10/149 (6%) Query: 30 LGLMPRRDR---LCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 +G+ R L +VQ + + I G+ + L D K D Sbjct: 15 MGMDSEWFRDLPLAVVQFATSSHCFVLHISFFDGRILPAAVKEALCDPSIIKCGVGVSGD 74 Query: 86 IAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSA 142 ++ L + ++ V + ++ Q LK K + ++I K S+W Sbjct: 75 VSRLQKEQNITIQSVLDVAQYSALFGLHQGAQSNLKVLAKSVANLSIEKDKMITRSNWEL 134 Query: 143 DDLSDEQLQYAASDVV--HLHALRLQFTE 169 LSD ++ YAA D + +L + Sbjct: 135 -PLSDSRVNYAAEDALASYLVGRAVMLKA 162 >gi|159482675|ref|XP_001699393.1| predicted protein [Chlamydomonas reinhardtii] gi|158272844|gb|EDO98639.1| predicted protein [Chlamydomonas reinhardtii] Length = 785 Score = 58.1 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 32/144 (22%) Query: 55 RIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK---IASRLT 110 + G AP +L G+L DE K+ + R D A L+ +GVR+R V + +A+R Sbjct: 48 QPGPGLAGAPFSLRGLLEDEHVPKLLYDVRSDAAALWSEYGVRLRGVTDLQLADVAARQA 107 Query: 111 RTYTNQHGLKDNLKELLGINISKA----------------------QQSSD------WSA 142 + + L L ++ ++ D W+ Sbjct: 108 EEGARRAAWVEGLVRCLSRRLAADGRGGAGVPPRLADDLAAATAIAKRYHDGGNTQVWTQ 167 Query: 143 DDLSDEQLQYAASDVVHLHALRLQ 166 L+ E +YAA+DV +LHAL Sbjct: 168 RPLTPELSEYAATDVRYLHALEEA 191 >gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130] gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130] Length = 978 Score = 58.1 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 61/198 (30%), Gaps = 53/198 (26%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------- 65 A + +AVDTET L L V L+ G G I +A + + + Sbjct: 381 AHDLGHVAVDTETTSLDAMACDLVGVSLATGPGRACYIPLAHLKDGSSDDGDMFSEGLDP 440 Query: 66 -----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 L ML KI ++D VL G+ V P T + S + Sbjct: 441 DQMDLKEALALLKPMLEAPSVLKIAQNLKYDWLVLSRY-GIEVGPFDDTMLLSYVLDAGR 499 Query: 115 NQHGLKDN-----------LKELLG-----INISK--AQQSSDWSADDLSDEQLQYAASD 156 +HG+ KE+ G + K +++S YAA D Sbjct: 500 GKHGMDALSLAHLDHTPIPFKEVAGSGKSMVTFDKVSIEKAS------------AYAAED 547 Query: 157 VVHLHALRLQFTEKLQRL 174 L +L Sbjct: 548 ADVTLRLWTLLKARLVAE 565 >gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem] gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem] Length = 892 Score = 58.1 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 76/210 (36%), Gaps = 28/210 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIV--QLSPGDGTVDIIRIAAGQKNAPN--------- 65 A A+D ET L PR R +V +S I + AP Sbjct: 310 LEAAPAFAIDLETTSLNPREAR--VVGYAVSCRPHEARYIPVGHRYLGAPEQLPEALVLE 367 Query: 66 -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNL 123 L +L D R KI ++D VL G + ++ T +A+ L N GL Sbjct: 368 ILGPLLKDPARRKIGQNLKYDYQVL-RMAGFEMEGIWCDTMLAAYLVNPARNSQGLDALA 426 Query: 124 KELLGINISKAQQSSDWSADDL--SDEQLQYAA------SDVVHLHALRLQFTEKLQRLG 175 E L + + + +L S+ L A +D +L L K++ G Sbjct: 427 LEYLDHRMISYAEVAGSGKCELNFSEVDLDRAGPYSCEDADATYL--LHEILLPKVREQG 484 Query: 176 RSDLATS-CCNFLMDRAELDLLGWE-NVDI 203 +L + A+++L G + +VD+ Sbjct: 485 MEELLFDLEMPLMRILADMELHGVKLDVDL 514 >gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688] gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688] Length = 918 Score = 58.1 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 19/175 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVD 72 + DTET L P +L + S G + + AP+ + +L + Sbjct: 343 VCFDTETTSLDPLTAKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAATLARIKPLLEN 402 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 +K+ ++D VL G+ + + T + S + ++ HG+ D LG+ Sbjct: 403 PAIKKVGQNLKYDKHVLANH-GIVLNGIAHDTLLQSYVLESHRT-HGMDDLAMRHLGVQT 460 Query: 132 SKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +Q + A +S Q+ +YAA D L ++ + + Sbjct: 461 ITYEQVAGKGAKQVSFSQVALEQASEYAAEDADVTLQLHENLYPQVAEDAKLEFV 515 >gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057] gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056] gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059] gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057] Length = 923 Score = 57.7 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 18/173 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D A+DTET L R + ++ + +A +NAP + Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQVLAQIK 405 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L +E +KI H+ ++D A + G+ ++ F + +AS + +HG+ D + Sbjct: 406 PVLENEAVKKIGHHLKYD-AHISANHGIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L + +Q + A + Q++ YAA D + L + KL+ Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517 >gi|125571460|gb|EAZ12975.1| hypothetical protein OsJ_02895 [Oryza sativa Japonica Group] Length = 357 Score = 57.7 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 12/155 (7%) Query: 23 IAVDTETLGLMPR-RDRLC----IVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKRE 76 + +DTE + C ++QL G + +I P L L D Sbjct: 194 VGIDTE-WRTDHLPNGKTCYKVAVLQLCVG-RRCLLFQIYQAGNMVPHELAEFLADPSVR 251 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKA 134 + D+ L +RV + A+ + GLK ++G ++ K Sbjct: 252 FVGVAVNNDMQRLANDCNLRVACAVDLRYAAAAVLGQPELARAGLKRLALTVMGAHMEKE 311 Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + S W L+ EQ+ YA D + + + Sbjct: 312 KNITKSRWGEPTLTWEQVNYACIDAYVSYEIGRRL 346 >gi|55773858|dbj|BAD72396.1| hypothetical protein [Oryza sativa Japonica Group] gi|55773956|dbj|BAD72483.1| hypothetical protein [Oryza sativa Japonica Group] Length = 298 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 12/155 (7%) Query: 23 IAVDTETLGLMPR-RDRLC----IVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKRE 76 + +DTE + C ++QL G + +I P L L D Sbjct: 135 VGIDTE-WRTDHLPNGKTCYKVAVLQLCVG-RRCLLFQIYQAGNMVPHELAEFLADPSVR 192 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKA 134 + D+ L +RV + A+ + GLK ++G ++ K Sbjct: 193 FVGVAVNNDMQRLANDCNLRVACAVDLRYAAAAVLGQPELARAGLKRLALTVMGAHMEKE 252 Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + S W L+ EQ+ YA D + + + Sbjct: 253 KNITKSRWGEPTLTWEQVNYACIDAYVSYEIGRRL 287 >gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799] gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799] Length = 922 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 20/176 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A+DTET + L + + G + +A + AP L Sbjct: 340 LSQAELFAIDTETTSIDYMAAELVGLSFAVEAGKGAYLPVAHDYEGAPVQLDRDTVLAKL 399 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D K+ ++D++VL G+ + + F T + S + +H + D + Sbjct: 400 KPLLEDTAPRKVGQNLKYDMSVLAKY-GIALNGIAFDTMLESYCFNSTAGRHNMDDMALK 458 Query: 126 LLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 LG K + ++ L + YAA D L +LQ L Sbjct: 459 YLGHKTIHFEDIAGKGAKQKTFNQIPLEEA-APYAAEDADITLRLHQHLWPRLQEL 513 >gi|114656432|ref|XP_523055.2| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 2 [Pan troglodytes] Length = 572 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 173 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 230 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137 + + VF T++A S T Y L+++L + L + + K Q+ Sbjct: 231 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 290 Query: 138 -SDWSADDLSDEQLQYAASDVVH 159 W +S L+ A + + Sbjct: 291 PEVWFIRPVSPSLLKILALEATY 313 >gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21] gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21] Length = 892 Score = 57.7 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 74/214 (34%), Gaps = 36/214 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL------CIVQLSPGDGTVDIIRIAAGQKNAPN----- 65 A A+D ET L PR R+ C I + AP Sbjct: 310 LEAAPAFAIDLETTSLNPREARVVGYAASC------RPHEAWYIPVGHRYLGAPEQLPES 363 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119 L +L D R KI ++D VL G + ++ T +A+ L N GL Sbjct: 364 LVLEILGPLLKDPARRKIGQNLKYDYQVL-RIAGFELEGIWCDTMLAAYLVNPARNSQGL 422 Query: 120 KDNLKELLGINISKAQQSSDWSADDL--SDEQLQYAA------SDVVHLHALRLQFTEKL 171 E L + + + +L S+ L A +D +L L K+ Sbjct: 423 DALALEYLDHRMISYAEVARSGKCELNFSEVDLDRAGPYSCEDADATYL--LHEILLPKV 480 Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLGWE-NVDI 203 + G +L + A+++L G + +VD+ Sbjct: 481 REQGMEELLFDLEMPLMRILADMELHGVKLDVDL 514 >gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P] gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P] Length = 980 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 55/168 (32%), Gaps = 25/168 (14%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEKREK 77 A+ DTET GL L + S G + Q + E EK Sbjct: 409 AVCFDTETTGLKALEVELIGIAFSYETGKGYYVSFPEDQAETQRILEDFRPFFESE-IEK 467 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130 I H ++DI VL +F T IA L +H + + L Sbjct: 468 IGHNLKYDIKVLSTYKMPVKGKLFDTMIAHYLINP-DMRHNMDVLAETYLNYQPISIAEL 526 Query: 131 ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQ 172 I K + LS EQ +YA D L+ FT +L+ Sbjct: 527 IGKK------GKNQLSMRSVPLKEQTEYAVEDADITFQLKQLFTGELE 568 >gi|221044296|dbj|BAH13825.1| unnamed protein product [Homo sapiens] Length = 572 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 173 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 230 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137 + + VF T++A S T Y L+++L + L + + K Q+ Sbjct: 231 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 290 Query: 138 -SDWSADDLSDEQLQYAASDVVH 159 W +S L+ A + + Sbjct: 291 PEVWFIRPVSPSLLKILALEATY 313 >gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54] Length = 948 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 29/173 (16%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----------APNLVGMLVD 72 +AVDTET L + +L + ++ G I +A + L L D Sbjct: 375 VAVDTETTSLDEMQAKLVGLSMAVAPGVACYIPVAHRGPDGATQLPKDEVLARLRPWLED 434 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 R K+ H+ ++D V G+R+ + T + + + ++ GL D + LG + Sbjct: 435 ASRAKLLHHAKYDTHVFANE-GIRLAGIAEDTMLQAYVLESH-RGVGLNDLAQRYLGRS- 491 Query: 132 SKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR 173 D +Q+ YAA D L ++ Sbjct: 492 --GVSYEDLCGK--GAKQIGFDEVAVDKAGHYAAEDADFTLQLHQVLRPQVAA 540 >gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126] Length = 930 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + IA DTET L L V +G + +A +AP L Sbjct: 347 LEKAELIAFDTETTSLNYMDAELVGVSFCIEEGEAAYVPVAHDYPDAPAQLSREFVLDAL 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L + K+ + ++D VL + + + F T + S + + +H + Sbjct: 407 KPILESDTVIKVGQHIKYDKNVLANY-DITLNGIGFDTMLESYVLNSTAQRHDMDSLALA 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 LG ++ + A L+ Q+ YAA D L KL+ Sbjct: 466 YLGHKTIHFEEIAGKGAKQLTFNQISLEEAGPYAAEDADITLRLHNAIWTKLKE 519 >gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 921 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 79/199 (39%), Gaps = 29/199 (14%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM------LV 71 ++VDTET P L + S + T + + + Q + +L + ++ Sbjct: 345 VLSVDTETTSPNPAMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSLEEIREHLGPVL 404 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + K+ ++D+ VL G + + F T +AS + + +H + K+LL + Sbjct: 405 SSQVPKVGQNIKYDLIVLENH-GFILNNIQFDTMLASYVIQPEGRRHNMDVLAKDLLNYD 463 Query: 131 I----------SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 K ++ +D + EQ+ +YAA D L F +K++ G + Sbjct: 464 TITYDDLVGTGKKKKELTD-----IDPEQVAEYAAEDADITFRLYQIFRKKIKESGVEPI 518 Query: 180 ATS-CCNFLMDRAELDLLG 197 + + A+++ G Sbjct: 519 LRNIEMPLISVLAKMEKTG 537 >gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 921 Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 79/199 (39%), Gaps = 29/199 (14%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM------LV 71 ++VDTET P L + S + T + + + Q + +L + ++ Sbjct: 345 VLSVDTETTSPNPAMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSLEEIREHLGPVL 404 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + K+ ++D+ VL G + + F T +AS + + +H + K+LL + Sbjct: 405 SSQVPKVGQNIKYDLIVLENH-GFILNNIQFDTMLASYVIQPEGRRHNMDVLAKDLLNYD 463 Query: 131 I----------SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 K ++ +D + EQ+ +YAA D L F +K++ G + Sbjct: 464 TITYDDLVGTGKKKKELTD-----IDPEQVAEYAAEDADITFRLYQIFRKKIKESGVEPI 518 Query: 180 ATS-CCNFLMDRAELDLLG 197 + + A+++ G Sbjct: 519 LRNIEMPLISVLAKMEKTG 537 >gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65] gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65] Length = 916 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 18/167 (10%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A+DTET L + + L+ I +A AP + +L DE Sbjct: 341 AIDTETTSLKYMEAEIVGISLAVAPNEACYIPLAHDYAGAPEQLDRDWVLQKMKPLLEDE 400 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +K+ ++D VL + + + T + S + + ++H + D K LG Sbjct: 401 TPKKVGQNLKYDAHVLKNY-DIELNGIAHDTMLESYVLNSTASKHNMDDLAKHYLGHECI 459 Query: 133 KAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 + + A L+ Q+ +YAA D L +L+ Sbjct: 460 DFESIAGKGAKQLTFNQIPVEQAGEYAAEDADITLRLHQVLWPQLEA 506 >gi|328850207|gb|EGF99375.1| hypothetical protein MELLADRAFT_112782 [Melampsora larici-populina 98AG31] Length = 380 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 39/181 (21%) Query: 18 RYVDAIAVDTETLGLMPRRDRLC-----IVQLSPGDGTVDIIRI--AAGQKNAPN----- 65 + + AIA D E R C ++QL+ G V II++ GQK Sbjct: 145 KSMKAIAFDME---WCHDWSRKCARTTSLIQLA-GRSKVLIIQLVQLDGQKWKEATFPQC 200 Query: 66 LVGMLVDEKREKIFHYG--------RFDIAVLFYTFGVRVRPV---------FCTKIASR 108 L ++ + K G DI + + V+++ F ++ Sbjct: 201 LADLITSTEIIK-MGAGIISDERKIDQDIWIDSHDQIVKLKNYLEINDLIKKFDSQ---A 256 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 L+ + L +++ K + S+W L+ Q YAA+DVV + + + Sbjct: 257 KEEIGNGTFSLQKLVDRYLNLHLPKTKKLTISNWETTQLTSSQAHYAAADVVTVIRIYER 316 Query: 167 F 167 Sbjct: 317 L 317 >gi|189460764|ref|ZP_03009549.1| hypothetical protein BACCOP_01411 [Bacteroides coprocola DSM 17136] gi|189432483|gb|EDV01468.1| hypothetical protein BACCOP_01411 [Bacteroides coprocola DSM 17136] Length = 146 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 4/141 (2%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++Q+S D + P+ + + K+ + D A+L R Sbjct: 3 LLQISTHDTCFL---FRLNRLGLPDFLEEFLQNDVLKVGLSLKDDFAMLRKRNTKDPRSG 59 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 ++ + + L+ L G ISK+Q+ S+W A+ L++ Q YAA+D Sbjct: 60 NWVELQDYVPCFGIEEKSLQKIYALLFGKKISKSQRLSNWEAEVLTEAQQLYAATDAWAC 119 Query: 161 HALRLQFTEKLQRLGRSDLAT 181 + + L+ G ++ Sbjct: 120 VEIYNYLDD-LRSTGGYEIVK 139 >gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355] Length = 928 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A D ET GL + + + G + +A +AP L Sbjct: 345 LKNSEVFAFDLETDGLDTLTANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVLAQL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D K+ ++D VL + + + + T + S + + +H + Sbjct: 405 KPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKYDTMLESYILNSVVGKHDMDSLSAR 463 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 L ++ + + L+ Q+ YAA D L L+ +L++ Sbjct: 464 WLNHKTITFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKE 518 >gi|218658301|ref|ZP_03514231.1| ribonuclease III protein [Rhizobium etli IE4771] Length = 51 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%) Query: 7 HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI 53 D+ A C D I +DTE L LC++Q++ V + Sbjct: 4 TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLV 51 >gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO] gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO] Length = 892 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 17/152 (11%) Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNL 123 NL +L ++ + I ++D +VL G+ RP F T IA+ L + L + Sbjct: 368 NLKSILENQSAKIIGQNLKYDYSVLKMH-GIEPVRPSFDTMIAAYLLNPDEKRFNLDELA 426 Query: 124 KELLGIN-ISKAQQSSDWSADDL----------SDEQLQYAASDVVHLHALRLQFTEKLQ 172 + L IS + D L ++ +Y+A D L KL Sbjct: 427 MKFLNYKMISFEELFKD--TSPLFGAVTFADVSVEDATKYSAEDADITRRLYEILNIKLH 484 Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG-WENVD 202 ++ + ++L G + N+D Sbjct: 485 EADLLEVLEKIEMPLIPVLVHMELEGVYMNID 516 >gi|224129176|ref|XP_002328909.1| predicted protein [Populus trichocarpa] gi|222839339|gb|EEE77676.1| predicted protein [Populus trichocarpa] Length = 323 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 11/154 (7%) Query: 23 IAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 I D E T G++P + ++Q+ ++ I P+L +L D K K Sbjct: 152 IGFDIEWKPSFTTGVLP--GKAAVMQICANTSLCHVMHIFHSGI-TPSLQFLLEDSKLVK 208 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISK--A 134 + D A +F + V+ V + +A++ GL+ K L+ + K Sbjct: 209 VGIGIGGDCAKVFRDYNASVKSVEDLSYLANQKLDGKPKTWGLQALAKILVCKELQKPNK 268 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + +W D LS EQLQYAA+D L Sbjct: 269 IRLGNWQVDVLSKEQLQYAATDAFASWQLYQVLK 302 >gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] Length = 929 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 20/177 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L V + G + + AP L Sbjct: 345 LKKASVFAFDTETDSLDTLTANLVGVSFAISAGDAAYLPLGHDYLGAPEQLDREVVLAAL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNL 123 +L D KI +FD VL G+ ++ + + T + S + +H + Sbjct: 405 KPLLEDSNLLKIGQNIKFDRGVLARY-GIELQGIAYDTMLESYVLNSVAGMGRHDMDSLA 463 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 + L + ++ + + L+ Q+ YAA D L +L++ Sbjct: 464 ERHLNHKTTTFEEIAGKGKNQLTFNQVAVEQAAMYAAEDADVTLLLHQAMWPQLEKA 520 >gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1] gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1] Length = 928 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 20/202 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L + + + G + +A AP L Sbjct: 346 LKKAPLFAFDTETDSLDNHSANMVGLSFACEPGVAAYVPVAHDYIGAPEQISRERALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + + T + S + +H + + Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAWDTMLESYTLDSVAGRHDMDSLSER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ-RLGRSD 178 L ++ + + L+ Q+ YAA D L L+ KLQ R G + Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIDLEQAGRYAAEDADVTLQLHLKMWPKLQKREGPLN 524 Query: 179 LATS-CCNFLMDRAELDLLGWE 199 + + + + ++ G + Sbjct: 525 VFRNIEMPLVPVLSRIERNGVK 546 >gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103] gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103] Length = 928 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A D ET GL + + + G + +A +AP L Sbjct: 345 LKNSEVFAFDLETDGLDTLTANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVLAQL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D K+ ++D VL + + + + T + S + + +H + Sbjct: 405 KPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKYDTMLESYILNSVVGKHDMDSLSAR 463 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 L ++ + + L+ Q+ YAA D L L+ +L++ Sbjct: 464 WLNHKTITFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKE 518 >gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14] gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14] Length = 920 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 21/191 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREKI 78 +++DTET L + + + + I A ++ A + ++K KI Sbjct: 350 LSLDTETTSTNAIDAELVGLSFAVEENKAFYVAIPAEREKALRIVNIFKPLYENKKILKI 409 Query: 79 FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRT--YTNQHGLKDNLKELLGINIS--- 132 ++D VL + ++ +F T IA L + + N L + I+I Sbjct: 410 GQNIKYDYEVLLNY-DIEIKGKMFDTMIAHYLIQPELHHNMDYLAEVFLNYQTIHIEELI 468 Query: 133 ----KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186 K Q+ + DL+ + + +YAA D L+ KL + L Sbjct: 469 GPKGKNQK----NMRDLNPKDVYEYAAEDADITLRLKNVLEPKLGEVKAEHLFWEIEMPL 524 Query: 187 LMDRAELDLLG 197 + A+++ G Sbjct: 525 IPVLADMERNG 535 >gi|123983340|gb|ABM83411.1| exonuclease 3'-5' domain-like 1 [synthetic construct] gi|123998041|gb|ABM86622.1| exonuclease 3'-5' domain-like 1 [synthetic construct] Length = 475 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 76 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 133 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137 + + VF T++A S T Y L+++L + L + + K Q+ Sbjct: 134 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 193 Query: 138 -SDWSADDLSDEQLQYAASDVVH 159 W +S L+ A + + Sbjct: 194 PEVWFIRPVSPSLLKILALEATY 216 >gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 929 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 20/190 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL----VGMLVDEKREKI 78 + DTET + L + + ++ A L +EK K+ Sbjct: 359 VCFDTETTAIDALEAELVGISFCWTAHKGYYVPFPVDKEEATALLNTLRPFFENEKITKV 418 Query: 79 FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130 ++D+ VL G++V+ +F T IA L +H + + LG Sbjct: 419 GQNLKYDLKVLQNY-GIKVQGALFDTMIAHYLINP-DMRHNMDLLSETYLGYTPIAIESL 476 Query: 131 ISKA-QQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFL 187 I K Q S ++ +E +YA D L+ F +L ++ + L Sbjct: 477 IGKGKAQRS---MRTVALEEVKEYAVEDADVTWQLKDVFKAELPKVNAQKVYADLEMPLL 533 Query: 188 MDRAELDLLG 197 A ++ G Sbjct: 534 KVLAVMEREG 543 >gi|328545870|ref|YP_004305979.1| DNA polymerase I [polymorphum gilvum SL003B-26A1] gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1] Length = 994 Score = 57.3 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 60/223 (26%), Gaps = 59/223 (26%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------- 57 A +A DTET L + L V L+ G + +A Sbjct: 400 AVETGLVAFDTETTSLDAMQAELVGVSLATAPGKACYVPLAHVDGEGDLLGGGGLVEGQI 459 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + L ML D KI ++D V+ GV + P T + S + + Sbjct: 460 PLAEALDVLRPMLEDAGVLKIAQNLKYDWLVMARY-GVEIAPYDDTMLLSYVLDAGKGGN 518 Query: 118 GLKDNLKELLG---------------------INISKAQQSSDWSADDLSDEQLQYAASD 156 G+ + + L + I KA YAA D Sbjct: 519 GMDELAERWLDHTPIPFKEVAGSGKAMVTFDKVPIDKAT---------------AYAAED 563 Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCN--FLMDRAELDLLG 197 L +L R + A ++ G Sbjct: 564 ADVTLRLWRVLKPRLVAE-RMATVYETLERPMVPVLARMERRG 605 >gi|114656434|ref|XP_001147941.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 1 [Pan troglodytes] Length = 514 Score = 56.9 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 115 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 172 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137 + + VF T++A S T Y L+++L + L + + K Q+ Sbjct: 173 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 232 Query: 138 -SDWSADDLSDEQLQYAASDVVH 159 W +S L+ A + + Sbjct: 233 PEVWFIRPVSPSLLKILALEATY 255 >gi|255563614|ref|XP_002522809.1| 3'-5' exonuclease, putative [Ricinus communis] gi|223538047|gb|EEF39660.1| 3'-5' exonuclease, putative [Ricinus communis] Length = 149 Score = 56.9 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 8/147 (5%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 +QL G ++ I L +L D K+ D +F + V V+ V Sbjct: 1 MQLCTGTDYCHVMHIIHSGIPKS-LQSLLEDSALLKVGVGVGNDSVKVFTDYNVSVKAVE 59 Query: 102 C-TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVV 158 + +A + L+ + L+ + K + +W D LS EQL+YAA+D Sbjct: 60 DLSYLARKKIGGKPKSWSLQSLTEMLVCKELGKPNKIRLGNWEVDVLSKEQLEYAATDAF 119 Query: 159 HLHALRLQF----TEKLQRLGRSDLAT 181 L K GRS+ A Sbjct: 120 ASWQLYQVLRSLPDTKEVADGRSEEAE 146 >gi|157129632|ref|XP_001655429.1| hypothetical protein AaeL_AAEL011560 [Aedes aegypti] gi|108872139|gb|EAT36364.1| conserved hypothetical protein [Aedes aegypti] Length = 339 Score = 56.9 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 12/177 (6%) Query: 2 TTIRVHEGDI---PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 I V + DI A R +A+ E + ++ ++ + Sbjct: 104 NHIFVFQTDIKYHDAIKYLRNQRLLAIGMEGIEGGRHSTSPSLLSIATPERIYVFD--VM 161 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRPVFCTKIAS-RLTRTYTN 115 +L +L D K ++ H R D VL + + + F T +A T Y + Sbjct: 162 WMNVPKDLRAILGDPKVRRVAHNARLVED--VLRHRYQAPLGKCFDTLVAHISTTNDYDD 219 Query: 116 QHGL--KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 QH L ++ L + L + + S ++ L++ Q + AA +V L AL+ + Sbjct: 220 QHELSIQECLAKYLNLPSNFFDSSIKFNNRPLNESQRKAAAKNVAFLLALQDYLVHE 276 >gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424] gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus taiwanensis LMG 19424] Length = 939 Score = 56.9 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 26/178 (14%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------------AP 64 +A+DTET L P + +L + LS G I +A + Sbjct: 356 APLVAIDTETTSLDPMQAQLVGISLSAAPGEACYIPVAHRGPDVAGLPEHGQLSREFVLE 415 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123 + L D R K+ ++DI V G+++R V T + S + ++ N HG+ Sbjct: 416 RMRAWLEDASRPKLGQNLKYDIHVFANH-GIKLRGVAHDTMLQSYVLASHRN-HGMDSLA 473 Query: 124 KELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + LL + K + DL+ +YAA D L + +++ Sbjct: 474 ERLLSLKTITYEEVCGKGASQIGFDQIDLARA-TEYAAEDADVTLRLHRRMFPQVEAA 530 >gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] Length = 949 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 26/202 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVD 72 A DTET L ++ + + + + ++ +L D Sbjct: 368 LGSHSAFCFDTETTSLDTFEAQIVGLSFAVEPQKAYYVALPDDKQKTEEILRRFAPLLED 427 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI- 131 EK ++DI+VL +F T IA L + +H + + LG Sbjct: 428 ASIEKTGQNMKYDISVLGNYGIGVGGRMFDTMIAHYLLQPEL-RHNMDYMAEVFLGYRTI 486 Query: 132 --------SKAQQSSDWSADDLSD-------EQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K ++ S + D + YA D L+ F +KL Sbjct: 487 HFGELFDDDKTKK----SGKPIEDIRKVELGKLKDYACEDADITLQLKNIFGQKLCESSL 542 Query: 177 SDLATS-CCNFLMDRAELDLLG 197 +L + A+++ G Sbjct: 543 KNLFFDIEMPLVPILAKMESNG 564 >gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H] gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H] Length = 936 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 65/200 (32%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + ++ A DTET + + L V + G + + ++AP L Sbjct: 353 LQACESFAFDTETTSVHYMKAELVGVSFAIEVGKAAYVPLTHDYEDAPEQLDKEWVLAQL 412 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L + +KI ++D VL + + ++ + F T I S + +H + + Sbjct: 413 KPLLESKTIKKIGQNLKYDANVLSHY-DIALQGIEFDTMIESYCYNSVATRHNMDALALK 471 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + + A L+ Q+ YAA D L L Sbjct: 472 YLDYQTVHFEDVAGKGAKQLTFNQIDIEKAGHYAAEDADITLRLHHAIFPALAETASMLS 531 Query: 180 A--TSCCNFLMDRAELDLLG 197 L A ++ G Sbjct: 532 VFNEIEMPLLPVLARMEQTG 551 >gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4] gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4] Length = 918 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 19/175 (10%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVD 72 + DTET L P +L + S G + + AP+ + +L + Sbjct: 343 VCFDTETTSLDPLTAKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAATLARIKPLLEN 402 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 +K+ ++D VL G+ + + T + S + ++ HG+ D LG+ Sbjct: 403 PAIKKVGQNLKYDKHVLANH-GIALNGIAHDTLLQSYVLESHRT-HGMDDLAMRHLGVQT 460 Query: 132 SKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 +Q + A +S Q+ +YAA D L ++ + + Sbjct: 461 ITYEQVAGKGAKQVSFSQVALEQASEYAAEDADVTLQLHENLYPQVAEDAKLEFV 515 >gi|224049135|ref|XP_002193489.1| PREDICTED: similar to Werner syndrome [Taeniopygia guttata] Length = 1223 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 16/143 (11%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY--GRF-----DIAVL 89 + ++Q+ + + +++ L +L DE +K+ G D + Sbjct: 93 AKTAVIQMCVTEDKCYLFHVSSMAGFPKGLKRLLEDETIKKVGVGIEGDQWKLMSDFEIK 152 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSD 147 +F +A+ + L +K L G + K Q + S+W L++ Sbjct: 153 LKSFVELAD------VANEKLKC-KETWSLNGLVKHLFGRQLLKDQSVRCSNWEQFPLNE 205 Query: 148 EQLQYAASDVVHLHALRLQFTEK 170 EQ YAA+D + + + Sbjct: 206 EQKLYAATDAYAGYIVYEKLKNM 228 >gi|213409039|ref|XP_002175290.1| conserved hypothetical protein [Schizosaccharomyces japonicus yFS275] gi|212003337|gb|EEB08997.1| conserved hypothetical protein [Schizosaccharomyces japonicus yFS275] Length = 315 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 25/176 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI----IRIAAGQKNAPNLVGMLVD 72 + + D E R + ++Q+ + + +RI + + L ++ Sbjct: 118 LQSSPVLGFDME----WTYRTPVSMIQICTSKLILLVHLTRMRIYSPEYFPRRLKELMES 173 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT-------------YTNQHGL 119 K + D L F V + + SR R L Sbjct: 174 PDHIKCGVAIQGDATRLLKAFQVSSKGLCE---LSRYARAVDPETWIGNPRTSGNRLIAL 230 Query: 120 KDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + LG+ + K Q S+W L QLQYAA DV + L+ Q+ Sbjct: 231 TKLAHQYLGLPLDKGPVQVSNWDQGKLKASQLQYAAIDVYASLQIFLELERMRQQK 286 >gi|158258485|dbj|BAF85213.1| unnamed protein product [Homo sapiens] Length = 514 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 115 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 172 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137 + + VF T++A S T Y L+++L + L + + K Q+ Sbjct: 173 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 232 Query: 138 -SDWSADDLSDEQLQYAASDVVH 159 W +S L+ A + + Sbjct: 233 PEVWFIRPVSPSLLKILALEATY 255 >gi|34303939|ref|NP_689809.2| exonuclease 3'-5' domain-containing protein 1 [Homo sapiens] gi|317373564|sp|Q8NHP7|EXD1_HUMAN RecName: Full=Exonuclease 3'-5' domain-containing protein 1; AltName: Full=Exonuclease 3'-5' domain-like-containing protein 1 gi|34192161|gb|AAH30628.2| Exonuclease 3'-5' domain containing 1 [Homo sapiens] Length = 514 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 115 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 172 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137 + + VF T++A S T Y L+++L + L + + K Q+ Sbjct: 173 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 232 Query: 138 -SDWSADDLSDEQLQYAASDVVH 159 W +S L+ A + + Sbjct: 233 PEVWFIRPVSPSLLKILALEATY 255 >gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] Length = 1000 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 59/203 (29%), Gaps = 53/203 (26%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQ---------LSPGDGT-------VDIIRIA- 57 AR +A DTET L ++Q ++ + + Sbjct: 393 ADARETGIVAFDTETTSLD-------VMQAEIVGFSLAIADNKNDPSGASIRAAYVPLNH 445 Query: 58 -----------------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 + P L +L D KI ++D +L +G+ + Sbjct: 446 KNGVGDLLGGGLADNQIPLRDALPRLKALLEDTSVLKIAQNLKYD-YLLMKRYGIETKGF 504 Query: 101 FCTKIASRLTRTYTNQ-HGLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------ 151 T + S + N HG+ + LG K S +++ + + Sbjct: 505 DDTMLLSYVLDGGANATHGMDSLSERWLGHKPIAYKDVAGS--GKSNITFDLVDIDRATA 562 Query: 152 YAASDVVHLHALRLQFTEKLQRL 174 YAA D L L +L Sbjct: 563 YAAEDADVTLRLWLVLKPRLAAE 585 >gi|119612879|gb|EAW92473.1| exonuclease 3'-5' domain-like 1 [Homo sapiens] Length = 514 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94 +LC +Q++ G + N L +L D++ K+ H R D L + +G Sbjct: 115 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 172 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137 + + VF T++A S T Y L+++L + L + + K Q+ Sbjct: 173 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 232 Query: 138 -SDWSADDLSDEQLQYAASDVVH 159 W +S L+ A + + Sbjct: 233 PEVWFIRPVSPSLLKILALEATY 255 >gi|115948459|ref|XP_797941.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115960146|ref|XP_001189124.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 531 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 7/150 (4%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-DGTVDIIRIAAGQKNAP-NLVGMLVDE 73 A + + I +D E + +R + ++QLS + + + R+ P +++ +L D Sbjct: 36 ATKQMKVIGLDCEWVTKDGQRQPVALLQLSSPVNQSCLLFRLDQLDGELPESILTILQDR 95 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS--RLTRT-YTNQHGLKDNLKELLGIN 130 K+ D L + + + + L+RT L++ +L Sbjct: 96 NTLKVGVGVIGDAKRLLNDYQIITHGCLDLRHLALRHLSRTLRGRSLSLRELASIVLQHE 155 Query: 131 ISKAQQ--SSDWSADDLSDEQLQYAASDVV 158 ++K + DW A LS EQ+ YA D V Sbjct: 156 MAKDDRVRCGDWEAVPLSKEQIHYAVDDAV 185 >gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40] Length = 908 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 L 127 L Sbjct: 452 L 452 >gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1] Length = 908 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 L 127 L Sbjct: 452 L 452 >gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] Length = 908 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 L 127 L Sbjct: 452 L 452 >gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] Length = 908 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 L 127 L Sbjct: 452 L 452 >gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] Length = 908 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 L 127 L Sbjct: 452 L 452 >gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] Length = 908 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 L 127 L Sbjct: 452 L 452 >gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] Length = 908 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 L 127 L Sbjct: 452 L 452 >gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] Length = 908 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 L 127 L Sbjct: 452 L 452 >gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] Length = 908 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 L 127 L Sbjct: 452 L 452 >gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] Length = 908 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 L 127 L Sbjct: 452 L 452 >gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379] gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379] Length = 893 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 65/205 (31%), Gaps = 27/205 (13%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------------AAGQKNA 63 A + A+D ET L PR + + S D I + Sbjct: 308 ALERSEEFAIDLETTSLDPRDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPRDLVL 367 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122 L L KI +FD+ VL GV + + F T +AS + HGL Sbjct: 368 ERLRPQLESPSPTKIGQNIKFDMQVLATN-GVSLSGIRFDTMLASYVLNPSRQGHGLDAL 426 Query: 123 LKELLGINI-----SKAQQSSDWSADDLSDEQLQ----YAASDVVHLHALRLQFTEKLQR 173 E LG + + + S +++ YA D L +F+ L Sbjct: 427 ALEHLGHRMISYAEVTGSGKT---QKNFSQVEIETASRYACEDADATWLLHRKFSPLLAE 483 Query: 174 LGRSDL-ATSCCNFLMDRAELDLLG 197 G +L + A ++ G Sbjct: 484 NGVEELFHRIEMPLVPILAGMENHG 508 >gi|49118127|gb|AAH73087.1| FFA-1 protein [Xenopus laevis] Length = 1434 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 16/142 (11%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY--GRF-----DIAVLF 90 ++ ++Q+ + + I+ L +L DE K+ G D + Sbjct: 90 KVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYELKL 149 Query: 91 YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDE 148 F +++A++ R + L +K L + K + S+W L+++ Sbjct: 150 KGFIEL------SEMANQKLRC-KEKWSLNGLIKHLFKEQLIKESSVRCSNWDIFPLTED 202 Query: 149 QLQYAASDVVHLHALRLQFTEK 170 Q YAA+D + + Sbjct: 203 QKLYAATDAYAGLLIYKKLEGM 224 >gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] Length = 976 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 65/184 (35%), Gaps = 41/184 (22%) Query: 21 DAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAG-------------QKN 62 + +A+DTET L P L C+ G+ + D+ I G + Sbjct: 381 EIVALDTETNSLNPLDAELVGIGFCL-----GEESNDLFYIPLGHQSQKDEMNQLAIEDV 435 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121 NL + ++EK +FD + + G+ + V F T +A + +HGL + Sbjct: 436 FLNLRTWIESPEKEKTLQNCKFDRQIFYNH-GLNLSGVTFDTLLADYILNNQ-EKHGLSE 493 Query: 122 NLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 G + +K D + + Y DV + + F E+ + Sbjct: 494 ICFREFGFKPPSFKETVGKNKDFSFVDINHASI------YCGYDVFLTYKIAKIFKERFR 547 Query: 173 RLGR 176 + + Sbjct: 548 KEKK 551 >gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55] gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55] Length = 930 Score = 56.9 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L + + + G + +A +AP+ L Sbjct: 348 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLALL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L + +R + F T + S + + +H + Sbjct: 408 KPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ +YAA D L L+ KLQ+ G + Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 526 Query: 179 LATS-CCNFLMDRAELDLLGWE 199 + + + ++ G + Sbjct: 527 IFKHIEMPLVPVLSRVERNGVK 548 >gi|322494963|emb|CBZ30266.1| hypothetical protein, unknown function [Leishmania mexicana MHOM/GT/2001/U1103] Length = 547 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 14/142 (9%) Query: 30 LGLMPRRDR---LCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85 +G+ R L +VQ + + I G+ + L D K D Sbjct: 15 MGMDSEWFRDLPLAVVQFATSSHCFVLHISFFDGRILPAAVKEALCDPSIIKCGVGVSGD 74 Query: 86 IAVLFYTFGVRVRPVFCTKIA--SRLTRTY-TNQHGLKDNLKELLGINI--SKAQQSSDW 140 ++ L + ++ V IA S L + Q LK K + ++I K S+W Sbjct: 75 VSRLQKEQNITIQSVLD--IAHYSALLGLHQGAQSNLKVLAKSVANLSIEKDKMITRSNW 132 Query: 141 SADDLSDEQLQYAASDVV--HL 160 LSD ++ YAA D + +L Sbjct: 133 EL-PLSDSRVNYAAEDALASYL 153 >gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] Length = 914 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 28/217 (12%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + D+ + A DTET L + ++ V + G + +A AP Sbjct: 321 LTQADLDDWLNRLNQAELFAFDTETTSLDYLQAQIVGVSFAVQVGEAAYVPLAHDYLGAP 380 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L + K+ KI ++D VL G+ ++ + F T + S + + Sbjct: 381 QQLSCDNVLAVLKPLLENPKKRKIGQNLKYDAHVLANH-GIHLQGMAFDTMLESYVLNS- 438 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164 T +H + + L D LS Q+ YA D L Sbjct: 439 TTKHDMDSLAQIYLQKT---TITFEDVAGKGKKQLSFNQIPLEHATPYACEDADITLQLH 495 Query: 165 LQFTEKLQRLGRSDLATS--CCNFLMDRAELDLLGWE 199 E+LQ + + + ++ G + Sbjct: 496 QNLWEQLQNRPKLERIFDDLEMPLIPVLIRMERHGVK 532 >gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22] gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22] Length = 930 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L + + + G + +A +AP+ L Sbjct: 348 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLALL 407 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L + +R + F T + S + + +H + Sbjct: 408 KPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178 L ++ + + L+ Q+ +YAA D L L+ KLQ+ G + Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 526 Query: 179 LATS-CCNFLMDRAELDLLGWE 199 + + + ++ G + Sbjct: 527 IFKHIEMPLVPVLSRVERNGVK 548 >gi|327279914|ref|XP_003224700.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Anolis carolinensis] Length = 1327 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 4/136 (2%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 ++ ++QL + + I++ L +L D +KI D L F V + Sbjct: 90 KVALIQLCESEEKCYLFHISSMSNFPGGLKRLLEDNHIKKIGVGIEGDKWKLMRDFEVNL 149 Query: 98 RPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAA 154 + +A++ R L D +K L + K + +W L++EQ YAA Sbjct: 150 GDLVDLADLANKKLRC-KEIWSLNDLVKHLFHKQLLKEKLVRCGNWEEFPLTEEQKLYAA 208 Query: 155 SDVVHLHALRLQFTEK 170 +D + + Sbjct: 209 TDAYAGFLIYKKLMTM 224 >gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73] gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73] Length = 968 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 29/193 (15%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRL---CI-VQ-----------LSPGDGTVD---IIRI 56 A A DTET L P + +L + +Q + DG + I+ Sbjct: 373 LEAEKQGYFAFDTETTSLDPMQAKLVGFSLALQPGKAAYIPLEHTAGEDGLLAGGRIVPQ 432 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 QK L +L ++ KI ++D V+ + +R T + S + Sbjct: 433 IETQKALALLKPILENQAILKIGQNIKYDWLVMKQY-DIVMRSFDDTMLLSYALEAGIST 491 Query: 117 HGLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFT 168 HG+ + LG K + +S Q+ YAA D L Sbjct: 492 HGIDVLSERWLGHKPITYKDLTYN--GKKIVSFAQIDLKQATLYAAEDADITLRLWQVLK 549 Query: 169 EKLQRLGRSDLAT 181 +L + + Sbjct: 550 PQLVAQRMTKIYE 562 >gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex Length = 605 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 18/174 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A TET L L + + G I +A +AP+ L Sbjct: 23 LEKAPVFAFATETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D +L G+ +R + F T + S + + +H + + Sbjct: 83 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 142 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 >gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205] Length = 985 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 68/202 (33%), Gaps = 34/202 (16%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRL---------CIVQLSP-----GDGTVDIIRIAAGQ 60 C R +A+DTET L P + L + QL+ D ++ Q Sbjct: 385 CCDRQSP-VALDTETTSLNPFQAELVGLGVCWGEGLDQLAYIPLGHQAELSDPAQLPLDQ 443 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L L K ++D +L V T +A R +HGL+ Sbjct: 444 VLG-ALAPWLSSAAHPKTLQNAKYDRLILLRHGLPLAGVVMDTLLA-DYLRDANAKHGLE 501 Query: 121 DNLKELLG-------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + G + K +++SA ++ L Y DV + L +L+ Sbjct: 502 LLAQRNFGFLPTSYSELVPKG---ANFSAVPMAQAAL-YCGMDVHVTYRLTPLLRGQLEA 557 Query: 174 LGRSDLATSCCNFLMDRAELDL 195 LG L+D+ EL L Sbjct: 558 LG------EPLTALLDQVELPL 573 >gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11] gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11] Length = 932 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 18/175 (10%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 D A DTET L L + + +G + +A +AP L Sbjct: 352 ADVAAFDTETDSLDYMVANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPY 411 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D+ + K+ ++D +VL + ++ + F T + S + + +H + L Sbjct: 412 LEDDNKAKVGQNLKYDASVLARY-DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQ 470 Query: 129 INISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177 N ++ + L+ Q+ YAA D L KL+ + Sbjct: 471 HNTISFEEIAGKGKKQLTFNQIALEQAAPYAAEDADITLRLHHVLNAKLEADEKL 525 >gi|149410714|ref|XP_001508312.1| PREDICTED: similar to Werner syndrome [Ornithorhynchus anatinus] Length = 1813 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 16/140 (11%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK--IFHYGRF-----DIAVLF 90 R+ ++QL D + I++ L +L +E K + G D + Sbjct: 482 RVALIQLCVSDQKCYLFHISSMSGFPKGLKMLLENEAIRKAGVGIEGDQWKLLSDFEIKL 541 Query: 91 YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 +F +A+ + + L +K L + KA + S W L+++ Sbjct: 542 KSFVELAD------VANEKLKC-KEKWSLNSLVKHLFNKQLLKDKAIRCSSWDEFPLTED 594 Query: 149 QLQYAASDVVHLHALRLQFT 168 Q YAA+D + + Sbjct: 595 QKLYAATDAYAGFIIYQKLA 614 >gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02] gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18] gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140] gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19] gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11] gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18] gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1] gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1] gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332] gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679] gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035] gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae TCDC-NG08107] Length = 908 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 35/218 (16%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 314 TTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIAFQAGEAVYIPVGHSLTAAP 373 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 374 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIAGDAMLASYIIESH 432 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + LG+ +K +D + ++ YAA D L Sbjct: 433 L-GHGLDELSGRWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 487 Query: 164 RLQF-----TEKLQRLGRSDL--ATSCCNFLMDRAELD 194 + ++L+ + +L A + ++D Sbjct: 488 EARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQID 525 >gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114] gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Vibrio fischeri ES114] Length = 932 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 18/175 (10%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 D A DTET L L + + +G + +A +AP L Sbjct: 352 ADVAAFDTETDSLDYMVANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPY 411 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D+ + K+ ++D +VL + ++ + F T + S + + +H + L Sbjct: 412 LEDDNKAKVGQNLKYDASVLARY-DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQ 470 Query: 129 INISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177 N ++ + L+ Q+ YAA D L KL+ + Sbjct: 471 HNTISFEEIAGKGKKQLTFNQIALEQAAPYAAEDADITLRLHHVLNAKLEADEKL 525 >gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090] gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2] gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090] gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] Length = 930 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 35/218 (16%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSGRWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQF-----TEKLQRLGRSDL--ATSCCNFLMDRAELD 194 + ++L+ + +L A + ++D Sbjct: 510 EARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQID 547 >gi|242054353|ref|XP_002456322.1| hypothetical protein SORBIDRAFT_03g033970 [Sorghum bicolor] gi|241928297|gb|EES01442.1| hypothetical protein SORBIDRAFT_03g033970 [Sorghum bicolor] Length = 208 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 8/141 (5%) Query: 23 IAVDTET--LGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + +D E + ++Q+ G + +I +L L D++ + Sbjct: 53 VGIDVEWRPSRTTTNHVPPVALLQICVG-RRCLVFKILHADYVPQSLSDFLADQRFAFVG 111 Query: 80 HYGRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135 R D A L +G++V + T A++L + GL+ + E++G+ + K Sbjct: 112 VGVRDDAAKLRSGYGLKVGRMVDLRTLAATKLRKPALRGAGLQALVSEVMGVEMEKPHHV 171 Query: 136 QSSDWSADDLSDEQLQYAASD 156 + S W A L+ +QL+YA +D Sbjct: 172 RVSAWDAPKLTYDQLKYACAD 192 >gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica] Length = 929 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 74/214 (34%), Gaps = 24/214 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + + AP L Sbjct: 345 LKRAPVFAFDTETDSLDTLTANLVGMSFAITAGDAAYLPLGHDYLGAPEQLDRDAVLAAL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNL 123 +L D KI +FD VL G+ ++ + + T + S + +H + Sbjct: 405 KPLLEDSNLLKIGQNIKFDCGVLVRY-GIELQGIAYDTMLESYVLNSVAGMGRHDMDSLA 463 Query: 124 KELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRS 177 + L + ++ + + L+ Q+ YAA D L +L+++ Sbjct: 464 ERHLNYKTTTFEEIAGKGKNQLTFNQVPVEQAAMYAAEDADVTLQLHQVIWPQLEKVPAL 523 Query: 178 DLA--TSCCNFLMDRAELDLLGWE-NVDIFS-HS 207 + + +M + ++ G N DI + HS Sbjct: 524 EKVFLETEMPLIMVLSRMERAGVLINSDILAEHS 557 >gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60] Length = 930 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 13/137 (9%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E + A A R A DTET L L + + G I +A +AP Sbjct: 335 LDEAALEALIARLRQAGCFAFDTETDSLDVLSANLVGISCADAPGQACYIPLAHDYLDAP 394 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L DE KI ++DI V+ G+ +R V F T + S + + Sbjct: 395 RQLDRQYVLARLQPLLEDEGVAKIGQNLKYDIGVMARY-GITLRGVAFDTMLESYVLNSV 453 Query: 114 TNQHGLKDNLKELLGIN 130 +H + L Sbjct: 454 AGRHDMDSLAARHLDHK 470 >gi|154418327|ref|XP_001582182.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] gi|121916415|gb|EAY21196.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] Length = 645 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 53/182 (29%), Gaps = 49/182 (26%) Query: 33 MPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF----HYGRFDIA 87 +C++ +S D I + +L + K+F H + Sbjct: 161 DHYFPNVICVLCISTRDCEYLID-VLELPDAITSLAPIFSARDITKVFGNAAHCCK---- 215 Query: 88 VLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKEL-------------------- 126 L + G+ + F A++ L+D ++ Sbjct: 216 -LLHQAGISDIYNSFDVTTAAQHLNI---STSLEDLTQDFRNRLQEGWIPDSARKVVPPP 271 Query: 127 ------------LGINISKAQQSS--DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L +++++ ++ DW LS Q++ A V +L L KL Sbjct: 272 DFPHNKVCDSEKLSQILTESESNAMQDWRIRPLSLSQMRLARQRVHYLLYLYDSLRLKLT 331 Query: 173 RL 174 Sbjct: 332 EE 333 >gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle] Length = 608 Score = 56.5 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 15/134 (11%) Query: 8 EGDIP--AECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNA 63 E D+ + + + +D+ET GL D R +VQ ++ + G A Sbjct: 21 ESDLDGFMDFIRAHQGFLGLDSETTGLDIYNDGFRCRLVQFGTPSE-AWVVPVERGGPYA 79 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLTRT-----YT 114 ++ L + + H +D+ V T GV + ++ T+I + L Sbjct: 80 GDVKRALEMVQGF-VLHNAAYDLQVFERTLGVPMEAMWPKVKDTRILAHLIDPRGKDEGG 138 Query: 115 NQHGLKDNLKELLG 128 + H L+D + + Sbjct: 139 SGHSLEDLTRRYID 152 >gi|193078597|gb|ABO13627.2| exonuclease putative [Acinetobacter baumannii ATCC 17978] Length = 213 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ L +L + K+ K+ + D +F+ G+++ Sbjct: 70 LIQLATEHKAYL---FHVNSSTLKFLQPILSNPKQIKVGFGLKND-KHIFHKKGIKLESC 125 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 +A + + Q G++ + LLG ++K++ +S+W+ L+ +Q+ Sbjct: 126 ID--LAKGFSHFGFKQQMGVQKAVALLLGQYLAKSKKIGTSNWARKPLTSQQIS 177 >gi|126643245|ref|YP_001086229.1| exonuclease putative [Acinetobacter baumannii ATCC 17978] Length = 186 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ L +L + K+ K+ + D +F+ G+++ Sbjct: 43 LIQLATEHKAYL---FHVNSSTLKFLQPILSNPKQIKVGFGLKND-KHIFHKKGIKLESC 98 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 +A + + Q G++ + LLG ++K++ +S+W+ L+ +Q+ Sbjct: 99 ID--LAKGFSHFGFKQQMGVQKAVALLLGQYLAKSKKIGTSNWARKPLTSQQIS 150 >gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223] gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223] Length = 890 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G I +A +AP L Sbjct: 307 LQQAELFAFDTETDSLDYMVANLVGMSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQL 366 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 367 KPLLEDESKAKVGQNLKYDASVIARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 425 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ YAA D L + + +++ + Sbjct: 426 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQ 485 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 486 VYSEIEMPLVPVLSRIERTG 505 >gi|169601620|ref|XP_001794232.1| hypothetical protein SNOG_03678 [Phaeosphaeria nodorum SN15] gi|160705977|gb|EAT88883.2| hypothetical protein SNOG_03678 [Phaeosphaeria nodorum SN15] Length = 721 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 21/137 (15%) Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ- 116 + P L +L K+ + D L ++ + VF L Sbjct: 197 PEELMPPTLKKILETPDILKVGVAVKGDFTRLERYLNIQPQGVFELSRLHNLVEGNITSA 256 Query: 117 -------HGLKDNLKELLGINISKAQQS------------SDWSADDLSDEQLQYAASDV 157 GL + + L + + K +Q SDWS L +Q+QYAA+D Sbjct: 257 QQVSNKLVGLAAQVLQHLQLPLYKGEQLADDPADTASVRESDWSK-PLDLQQIQYAAADA 315 Query: 158 VHLHALRLQFTEKLQRL 174 L K +++ Sbjct: 316 YAGFRLYDILEYKRKQM 332 >gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39] gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39] Length = 937 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 36/209 (17%) Query: 2 TTIRVHEGD--IPAECAARYV--------DAIAVDTETLGLMPRRDRLC-IVQLS----P 46 TI E D + R ++I+ DTET G L +V LS P Sbjct: 335 KTIENTEHDYRLIDTADLRKALIEELLQQESISFDTETTGTD---ANLAELVGLSFSVKP 391 Query: 47 GDGTVDIIRI--AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCT 103 G G + Q +L +E KI ++D+ +L +G+ ++ +F T Sbjct: 392 GAGYYIPLPPERTLAQPILDEFKVVLENENIAKIGQNIKYDMLIL-KWYGLEIKGKLFDT 450 Query: 104 KIASRLTRTYTNQHGLKDNLKELLG---INISK------AQQSSDWSADDLSDEQL-QYA 153 +A L T +H + + L I+I+K Q + D+ Q+ YA Sbjct: 451 MLAHYLIDPDT-RHNMDVLSENYLCYSPISITKLIGPKGKNQG---NMRDVPVAQVVDYA 506 Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLATS 182 A D L F L+ L LAT Sbjct: 507 AEDADVTLQLANVFRPMLKDLNAEQLATE 535 >gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4] gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4] Length = 892 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 25/204 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 V A AVD ET L P + + S + I + AP+ L Sbjct: 310 LTAVRAFAVDLETTSLNPLEAEIVGISFSFREHEAYYIPVGHRYPGAPHQLSRDDVLGAL 369 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 +L+D ++ KI ++D VL G+ ++ ++ T +AS L GL E Sbjct: 370 KPLLLDPEKHKIGQNIKYDYQVLRRA-GIDMQGIWCDTMLASYLLNPTRTSQGLDSLAVE 428 Query: 126 LLGINI-------SKAQQSSDWSADDLSDEQLQYAA--SDVVHLHALRLQFTEKLQRLGR 176 L + K ++ +++ ++ + Y+ +D +L L F +L G Sbjct: 429 FLDHRMISYAEVAGKGKEQKNFAQVEVEKASV-YSCEDADATYL--LHKLFLPRLAESGM 485 Query: 177 SDLATS-CCNFLMDRAELDLLGWE 199 L + AE++L G + Sbjct: 486 ERLFFELEMPLVKILAEMELYGVK 509 >gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] Length = 908 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68 + + I++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 ML-VDEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + K I +FD +L F P F T IA+ L T + + L ++ Sbjct: 396 LFKSNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451 Query: 127 L 127 L Sbjct: 452 L 452 >gi|309356436|emb|CAP37027.2| CBR-EGAL-1 protein [Caenorhabditis briggsae AF16] Length = 578 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 37/171 (21%) Query: 23 IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKREKIF 79 + VD E L L ++ + I +A+ G+L EK K+ Sbjct: 327 VGVDGEIFLS-------LGVI---ATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT----------------YTNQHGLKDNL 123 H R ++L + + V +R VF T++A L + + +L Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHDKFGKPVHEMRPITFINLQRVYYPQSL 436 Query: 124 KELLGINISKAQQSSD----WSADDLSDE-QLQYAASDVVHLH-ALRLQFT 168 L + K QS + W +++E QL + L AL + Sbjct: 437 M-LSDVTPRKMSQSPNLIFSWGVRPITEEFQLT-IVEEAHCLLSALYQALS 485 >gi|293610667|ref|ZP_06692967.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827011|gb|EFF85376.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 213 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 9/114 (7%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ L +L ++K+ K+ + D +F+ G+ + Sbjct: 70 LIQLATAQKAYL---FHVNSSTLKFLQPILSNQKQIKVGFGLKND-KHIFHKKGIELESC 125 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 +A + + Q GL+ + L G ++K++ +S+W+ L+ +Q+ Sbjct: 126 VD--LAKGFSHFGFKQQMGLQKAVALLFGQYLAKSKKVGTSNWARKPLTSQQIN 177 >gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus parainfluenzae T3T1] Length = 932 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 13/125 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + A+DTET L L + + +G + + AP L Sbjct: 352 LKQAKLFALDTETDNLDYMAANLVGISFALENGEAAYLPLQLDYLGAPKTLEKTTALTLL 411 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L + +K+ ++D+ + G+ V+ V F T + S + + T +H + D K Sbjct: 412 KPILENPTIQKVGQNFKYDLTIFARN-GIDVQGVAFDTMLESYVLNS-TGRHNMDDLAKR 469 Query: 126 LLGIN 130 LG Sbjct: 470 YLGHQ 474 >gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80] gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80] Length = 906 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 323 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 382 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 383 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 441 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 442 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDSKLEQ 501 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 502 VYREIEMPLVPVLSRIERTG 521 >gi|167999688|ref|XP_001752549.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696449|gb|EDQ82788.1| predicted protein [Physcomitrella patens subsp. patens] Length = 439 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 23/140 (16%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR----EKIFHYGRFDIAVLFYTFGVR 96 ++QLS + ++++ +L +L + I D L +G Sbjct: 270 LLQLSLEE-CCLLVQLRFIDMLPASLKSLLANPNIKMGGVGIL----ADTKKLKKDYG-- 322 Query: 97 VRPVFC------TKIA-SRLTRTYTNQHGLKDNLKELLGI--NISKAQQSSDWSADDLSD 147 + C T +A S L T + G+ +++LG+ +K S+W DL+ Sbjct: 323 ---LICAGEVELTTLAVSTLKNTSLKKSGIATLTEKVLGVPYEKNKRVTMSNWENRDLTY 379 Query: 148 EQLQYAASDVVHLHALRLQF 167 Q+ YAA+D +++ + Sbjct: 380 AQIHYAAADAWLSYSIMMAL 399 >gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] Length = 906 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 323 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 382 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 383 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 441 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 442 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDSKLEQ 501 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 502 VYREIEMPLVPVLSRIERTG 521 >gi|242057613|ref|XP_002457952.1| hypothetical protein SORBIDRAFT_03g023091 [Sorghum bicolor] gi|241929927|gb|EES03072.1| hypothetical protein SORBIDRAFT_03g023091 [Sorghum bicolor] Length = 547 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 13/156 (8%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82 + +DTE R ++ ++Q+ G + ++ +L L DE + Sbjct: 280 VGLDTE--WFESDRKKIALIQICVGK-KCLLFKVGHAGIIPDDLKSFLADENHVFVGVAI 336 Query: 83 RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELLGINIS-KA-- 134 D+ L + + ++ + + +H L + LLG+ + K Sbjct: 337 ANDLDRLREGHQIELSNK--VELQAMVPFIIPGKHWDNVPSLATLAQVLLGMRVEGKGTA 394 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + DW + L+D Q+ YA +DVV + + + Sbjct: 395 LRYKDWDNELLTDSQIHYACTDVVVPYMIGDMLQNE 430 >gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16] gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16] Length = 938 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 26/180 (14%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL----------- 66 +A+DTET L P + +L + LS G I +A + L Sbjct: 353 EAAPLVAIDTETTSLDPMQAQLVGISLSVEPGVACYIPVAHRGPDVAGLPDHGQLSREFV 412 Query: 67 ----VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121 L D R K+ ++D+ V GV++R V T + S + ++ N HG+ Sbjct: 413 LGRMRAWLEDASRPKLGQNLKYDVHVFANH-GVKLRGVAHDTMLQSYVLASHRN-HGMDS 470 Query: 122 NLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + LL + K + DL+ +YAA D L + +++ Sbjct: 471 LAERLLSLKTITYEEVCGKGASQIGFDQIDLARA-TEYAAEDADVTLRLHRKMFPQVEAA 529 >gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03] gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07] gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22] gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26] gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32] gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12] Length = 933 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 75/229 (32%), Gaps = 36/229 (15%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQK 61 T+R E AA+ AVDTET GL P + ++ G + + G Sbjct: 332 TVRTAEALQKWVSAAQEAGICAVDTETDGLDPLAANIVGFSIATAPGKACYVPLKHEGTL 391 Query: 62 NAPNLVGMLVD------------EKREKIFHYGRFDIAVLFYTFGVRVRPVF---CTKIA 106 AP + VD + KIFH +FD+ +L + G+ + + T + Sbjct: 392 EAPTGEQLAVDAALKLLAPLLQDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLI 450 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHL 160 S + G+ + L + + L Q+ +YAA D Sbjct: 451 SYSQSAGLHGQGMDELSAMHLSHTPISYDSVTGTGRNRLPFAQVPVATATKYAAEDADVT 510 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNFL-------------MDRAELDLL 196 L L+ L L +DRAELD L Sbjct: 511 LRLWHVLHPTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRAELDRL 559 >gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches] gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches] Length = 608 Score = 56.2 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 15/134 (11%) Query: 8 EGDIP--AECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNA 63 E D+ + + + +D+ET GL D R +VQ ++ + G A Sbjct: 21 ESDLDGFMDFIRAHQGFLGLDSETTGLDIYNDGFRCRLVQFGTPSE-AWVVPVERGGPYA 79 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLTRT-----YT 114 ++ L + + H +D+ V T GV + ++ T+I + L Sbjct: 80 GDVKRALEMVQGF-VLHNAAYDLQVFERTLGVPMETMWPKVKDTRILAHLIDPRGKDEGG 138 Query: 115 NQHGLKDNLKELLG 128 + H L+D + + Sbjct: 139 SGHSLEDLTRRYID 152 >gi|325123765|gb|ADY83288.1| ribonuclease D [Acinetobacter calcoaceticus PHEA-2] Length = 213 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 9/114 (7%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ L +L ++K+ K+ + D +F+ G+ + Sbjct: 70 LIQLATTQKAYL---FHVNSSTLKFLQPILSNQKQIKVGFGLKND-KHIFHKKGIELESC 125 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 +A + + Q GL+ + L G ++K++ +S+W+ L+ +Q+ Sbjct: 126 VD--LAKGFSHFGFKQQMGLQKAVALLFGQYLAKSKKVGTSNWARKPLTSQQIN 177 >gi|300176795|emb|CBK25364.2| unnamed protein product [Blastocystis hominis] Length = 287 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 12/134 (8%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGV 95 L I+QL+ + + I + P+L ++ DEK K H D L GV Sbjct: 28 LSIIQLTFRNVNIIIQVPLLDELPPPSLNVIMKDEKILKSGIGIH---EDCNKLCSYLGV 84 Query: 96 R-VRPVFC-TKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQL 150 V + T IA +L + L+ + + + + + +W A LS+EQ+ Sbjct: 85 EEVNSIVDVTDIA-KLMGHKDLKTSLQYLTSKYIHFHPLKLDNKIRCGNWDAQTLSNEQI 143 Query: 151 QYAASDVVHLHALR 164 YAA D + L Sbjct: 144 LYAAHDSYYSRELF 157 >gi|115395196|ref|XP_001213485.1| predicted protein [Aspergillus terreus NIH2624] gi|114193054|gb|EAU34754.1| predicted protein [Aspergillus terreus NIH2624] Length = 396 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 80/216 (37%), Gaps = 31/216 (14%) Query: 3 TIRVHEGDIPAECAARYV---DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVD--- 52 T+ AE A++ D + D E ++ + +VQL+ + Sbjct: 157 TVHYCRSVKSAEDVAQHFLHDDILGFDLEWKAQASTQDSIQNNVSLVQLANRERIALFHI 216 Query: 53 -IIRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 + R A G + AP+L +L + K+ + D + G+ R +F +L Sbjct: 217 AMFRPALGLADLVAPSLRAILESPRITKVGVSIKADSTRVRKYLGINTRAIFELSHLHKL 276 Query: 110 TRTYTNQ--------HGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVH 159 + + L + ++E G+ ++K + DW+ L+ Q+QYAASD Sbjct: 277 VKYCYSNPRLINKRLVNLSEQVEEHFGLPLAKEDEVRRGDWTHA-LNYRQVQYAASDPYA 335 Query: 160 LHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 L K + A L AELD+ Sbjct: 336 CLCLFYAMDAKRK-------ALDPVPPLPAHAELDI 364 >gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021] gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021] Length = 1004 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 11/133 (8%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 + G++ L +L D K+ ++ V+ G+ +R T + S + Sbjct: 465 VDSQVPGRETLSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSFDDTMLMSYVLDA 523 Query: 113 YTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVHLHALR 164 HG+ + LG K + L+ D+ YAA D L Sbjct: 524 GNGAHGMDSLAERWLGHTPIAYKDVTGT--GRSSLTFDFVDIDKATAYAAEDADIALRLW 581 Query: 165 LQFTEKLQRLGRS 177 +L G + Sbjct: 582 HVLKPRLAAKGLT 594 >gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] Length = 932 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 19/162 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKI 78 + DTET + L + + K +E+ K+ Sbjct: 362 VCFDTETTSVNALEAELVGISFCWSAHKGYYVPFPTDKVEATKLLETFRPFFENERIGKV 421 Query: 79 FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130 ++D+ VL + VR +F T IA L +H + + L Sbjct: 422 GQNLKYDLKVLQNY-NIEVRGALFDTMIAHYLLNP-DMRHNMDILSETYLNYTPIAIESL 479 Query: 131 ISKA-QQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170 I K Q S + +Q+ +YA D L+ F E+ Sbjct: 480 IGKGKAQRS---MRTVPLDQVKEYAVEDADVTWQLKNVFKEE 518 >gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly] gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly] Length = 922 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 15/193 (7%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------PNLVGM 69 + IA+DTET + + + +S + I I +KN+ + Sbjct: 350 LKKASYIAIDTETTSINVYESNIIGISVSFKEFESYYIPIETKEKNSIGKEYIIQKFNEL 409 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + + I +FD VL + F T IA+ + T + L + L Sbjct: 410 FNSQPKL-IGQNYKFDYKVLKRHGFNVISAYFDTMIAAYVIDPNT-KVSLDFLAAKYLMH 467 Query: 130 NISKAQ----QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K + Q S L YAA D L +KL+ L + Sbjct: 468 KNIKYEEIVPQHSTLKDIPLEIA-SNYAAEDADITFRLFNILRKKLKEDNLESLMKNIEM 526 Query: 185 NFLMDRAELDLLG 197 F E++ G Sbjct: 527 PFSNVIIEMEENG 539 >gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] Length = 932 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 14/137 (10%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E D+ + A+DTET L L + + +G + + AP Sbjct: 340 LTEADLNRWVEKLKQAKLFALDTETNNLDYMAANLVGISFALENGEAAYLPLQLDYLGAP 399 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L + +K+ ++D+ + G+ V+ V F T + S + + Sbjct: 400 KTLEKTTALALLKPVLENPAIQKVGQNFKYDLTIFARN-GIDVQGVAFDTMLESYVLNS- 457 Query: 114 TNQHGLKDNLKELLGIN 130 T +H + D K LG Sbjct: 458 TGRHNMDDLAKRYLGHQ 474 >gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614] gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614] Length = 996 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 54/199 (27%), Gaps = 56/199 (28%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------------------- 56 AA ++ DTET L + L V LS G + + Sbjct: 401 AAFEKGYVSFDTETTSLDAMQAELVGVSLSTEPGKACYVPLGHVDGEGDLLGGGGLVEGQ 460 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 + L ML D KI ++D V+ G+ + P T + S Sbjct: 461 IPLKDALDVLKPMLEDRSVLKIAQNLKYDWLVMTRY-GIDITPFDDTMLLSYTVDAGKGG 519 Query: 117 HGLKDNLKELLG---------------------INISKAQQSSDWSADDLSDEQLQYAAS 155 +G+ + + L + I KA YAA Sbjct: 520 NGMDELSERWLDHKPIPFKEICGSGKSMITFDKVAIDKAT---------------AYAAE 564 Query: 156 DVVHLHALRLQFTEKLQRL 174 D L L +L Sbjct: 565 DADVTLRLWLILKPRLASE 583 >gi|123509148|ref|XP_001329802.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] gi|121912850|gb|EAY17667.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] Length = 518 Score = 55.8 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 18/150 (12%) Query: 21 DAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + IA+D E P +C+ QL G + I R + Q N L + ++ K Sbjct: 77 NPIALDLE---WHPFNPSAGVCLFQLCSSHGCLLIKRESKKQCN-DLLNFLTTNQFFMKD 132 Query: 79 FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELL-----GINIS 132 DI +L TFG V +A+++ R + G + + + G + Sbjct: 133 I--AS-DIKMLRTTFGQDFTFKVCD--VAAQILRRNHLKEGFDEMVAQFCSDTPCGEFKN 187 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 K S W+ LS Q+ YAA+D V L+A Sbjct: 188 KKISRSKWNLK-LSPCQILYAANDAVALYA 216 >gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395] gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27] gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395] gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395] gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27] Length = 934 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 530 VYREIEMPLVPVLSRIERTG 549 >gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10] gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10] Length = 934 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 530 VYREIEMPLVPVLSRIERTG 549 >gi|225556093|gb|EEH04383.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] Length = 963 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 18/150 (12%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQK-------NAPNLVGMLVDEKREKIFHYGRFDIAVL 89 D + ++QL+ + I +A +P L +L K+ R D L Sbjct: 773 DNVSVIQLAS-KERIAIFHLALFNPANSLQHLLSPTLKRILESPDIVKVGVAIRADCTRL 831 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKELLGINISKA--QQSSDW 140 + G+R + ++ + + N L ++E LG+ + K + W Sbjct: 832 YKFLGIRTNNICEVSRLHKVVKHHLNPKLIDKRLVNLAQQVEEHLGLPLDKDPEIRCGGW 891 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEK 170 S L+ Q+QY A+D L K Sbjct: 892 SKK-LNYRQVQYVATDPYAALQLFHVLEAK 920 >gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33] gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757] gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33] gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757] Length = 934 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 530 VYREIEMPLVPVLSRIERTG 549 >gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33] gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9] gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236] gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9] gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33] gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236] Length = 906 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 323 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 382 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 383 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 441 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 442 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 501 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 502 VYREIEMPLVPVLSRIERTG 521 >gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107] gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107] Length = 937 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 19/190 (10%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I E + A + + DTET L R+ V ++ G I Sbjct: 340 DIIFTESEFATWLARLQAATEFSFDTETTSLDVMEARIVGVSVATEPGVAAYIPCGHDYM 399 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 AP L +L DE + KI ++D +VL G+ +R + + T + S + Sbjct: 400 GAPEQLSLEWVLNQLKPLLEDEHKIKIGQNIKYDRSVLLNY-GITLRGIKYDTMLESYVW 458 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164 + ++H + D + L ++ + L+ QL YAA D L Sbjct: 459 NSVASRHNMDDLAQTYLDYKTVTFEELAGKGVKQLTFNQLKIEDAGHYAAEDADITLRLH 518 Query: 165 LQFTEKLQRL 174 F +LQ+ Sbjct: 519 QFFWPQLQQQ 528 >gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] Length = 945 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 31/179 (17%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-----SPGDGTVDIIRI-------AAGQK 61 E +A DTET L PR +V L + D V + + ++ Sbjct: 349 ETCTDANHPVAWDTETTALNPRDA--ALVGLGCCWGAAPD-QVAYLPLGHKEGQNLPLEE 405 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120 L +L ++ K+ +FD ++ G+++R V F T +AS + H LK Sbjct: 406 TLAALRPILEGDRYPKVLQNAKFD-RLVLRFQGIQLRGVVFDTMLASYVINPEA-SHNLK 463 Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171 D + L + + K Q +D LS + QY DV + L+ + L Sbjct: 464 DLCQRYLPLQAQSYRTLVGKDQTLAD-----LSPATVAQYCGLDVHTTYLLKEKLEADL 517 >gi|125546566|gb|EAY92705.1| hypothetical protein OsI_14456 [Oryza sativa Indica Group] Length = 231 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 5/119 (4%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 + ++QL D + +I L L D + + R D A L +G+ V Sbjct: 72 VAVLQLCV-DRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVP 130 Query: 99 PVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYA 153 + + L R + GL+ ++E++G+ + K + S W +LS++Q +YA Sbjct: 131 RAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYA 189 >gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71] gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71] Length = 909 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 22/181 (12%) Query: 13 AECAARYVDA--IAVDTETLGLMPRR-DRLCIVQLSPGDGTVDIIRIAAGQKNAPN---- 65 + +R +A A DTET L D + + + G + +A AP Sbjct: 321 DDWLSRLSEAPLFAFDTETTSLNYMEADIVGL-SFAVERGEAAYVPLAHSYPGAPAQLDR 379 Query: 66 ------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHG 118 L +L D + K+ ++D +VL + ++ + F T + S + + +H Sbjct: 380 DAILAALKPLLEDPAKPKLGQNLKYDASVLARY-DIHMQGIAFDTMLESYVLDSTGTRHD 438 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 + + LG + + + + A ++ +Q+ YAA D AL KLQ Sbjct: 439 MDSLALKYLGRSTTHFEDVAGKGAKQITFDQVGIEQAGPYAAEDAEVTLALHETLWPKLQ 498 Query: 173 R 173 Sbjct: 499 E 499 >gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)] gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)] Length = 906 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 323 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVIAQL 382 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 383 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 441 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 442 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 501 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 502 VYREIEMPLVPVLSRIERTG 521 >gi|169794444|ref|YP_001712237.1| putative 3'-5' exonuclease [Acinetobacter baumannii AYE] gi|215482033|ref|YP_002324215.1| 3'-5' exonuclease family protein [Acinetobacter baumannii AB307-0294] gi|301345646|ref|ZP_07226387.1| 3'-5' exonuclease family protein [Acinetobacter baumannii AB056] gi|301512345|ref|ZP_07237582.1| 3'-5' exonuclease family protein [Acinetobacter baumannii AB058] gi|301596170|ref|ZP_07241178.1| 3'-5' exonuclease family protein [Acinetobacter baumannii AB059] gi|332851917|ref|ZP_08433803.1| 3'-5' exonuclease [Acinetobacter baumannii 6013150] gi|332868835|ref|ZP_08438428.1| 3'-5' exonuclease [Acinetobacter baumannii 6013113] gi|332874252|ref|ZP_08442172.1| 3'-5' exonuclease [Acinetobacter baumannii 6014059] gi|169147371|emb|CAM85232.1| conserved hypothetical protein; putative 3'-5' exonuclease [Acinetobacter baumannii AYE] gi|213988888|gb|ACJ59187.1| 3'-5' exonuclease family protein [Acinetobacter baumannii AB307-0294] gi|323519683|gb|ADX94064.1| putative 3'-5' exonuclease [Acinetobacter baumannii TCDC-AB0715] gi|332729610|gb|EGJ60947.1| 3'-5' exonuclease [Acinetobacter baumannii 6013150] gi|332733088|gb|EGJ64287.1| 3'-5' exonuclease [Acinetobacter baumannii 6013113] gi|332737536|gb|EGJ68443.1| 3'-5' exonuclease [Acinetobacter baumannii 6014059] Length = 213 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 9/114 (7%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ L +L + K+ K+ + D +F+ G+ + Sbjct: 70 LIQLATEHKAYL---FHVNLSTLKFLQPILSNPKQIKVGFGLKND-KHIFHKKGIELESC 125 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 +A + + Q G++ + LLG ++K++ +S+W+ L+ +Q+ Sbjct: 126 VD--LAKGFSHFGFKQQMGVQKAVALLLGQYLAKSKKVGTSNWARKPLTSQQIS 177 >gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4] Length = 934 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVIAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 530 VYREIEMPLVPVLSRIERTG 549 >gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21] gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21] Length = 906 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 323 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVIAQL 382 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 383 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 441 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 442 FLQHSCISFEQVAGKGKNQLTFNQIALQEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 501 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 502 VYREIEMPLVPVLSRIERTG 521 >gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39] gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39] Length = 934 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 530 VYREIEMPLVPVLSRIERTG 549 >gi|296214138|ref|XP_002753640.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Callithrix jacchus] Length = 572 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGR--FDIAVLFYTF 93 +LC +Q++ + V + I A N L +L D++ KI H R D L + + Sbjct: 173 KLCWLQVAT-NCRVYLFDIFLLGSRAFNNGLQMILEDKRILKIIHDCRWLSD--CLSHQY 229 Query: 94 GVRVRPVFCTKIA 106 G+ + VF T++A Sbjct: 230 GILLNNVFDTQVA 242 >gi|228904297|ref|ZP_04068392.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] gi|228930754|ref|ZP_04093731.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828844|gb|EEM74504.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228855382|gb|EEM99946.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] Length = 1097 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 38/210 (18%) Query: 21 DAIAVDTETLGLM-PRRDR-------LCIVQLSPGDGTVDIIRI-------AAGQKNA-- 63 +AVDTET GL + R + ++ ++ +G G + Sbjct: 210 KVLAVDTETTGLDITFKSRTGEHDECVGLI-ITGKEGESFYFPFKHTQFDNLCGGDDWYF 268 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR---LTRTYTNQHG 118 + +L + I H FD V++ G+ + V T A L Y G Sbjct: 269 METYMKPLLEKKDI--IVHNASFDWKVIYIY-GIVLNVVIDT-FAVFSLTLNAKYQTPVG 324 Query: 119 LKDNLKELLG---INISKAQQSSDWSA-----DDLSDEQLQ-YAASDVVHLHALRLQFTE 169 LK + LL + + ++ D+ + DL E ++ YA +D + AL E Sbjct: 325 LKHLISLLLKRDSLELDDLCKNGDFGSIDQNFADLPKELVRLYACADADNTLALYHYMLE 384 Query: 170 --KLQRLGRSDLATSCCNFLMDRAELDLLG 197 L+ G + + F + G Sbjct: 385 TNMLENWGATKVVQFESIFACAIGYSEFHG 414 >gi|116793719|gb|ABK26855.1| unknown [Picea sitchensis] Length = 204 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 21/164 (12%) Query: 19 YVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73 + + D E P R ++QL +G II++ LV L D Sbjct: 46 GQEIVGFDME---WRPSFQRGWENDTALLQLCTDNG-CLIIQMLFLDFIPEALVSFLKDP 101 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI------ASRLTRTYTNQHGLKDNLKELL 127 + + D A L G+ ++ A +L R Q GLK KE+L Sbjct: 102 GVKLVGVGIERDAAKLMNDHGLECGG----QVELGALAAEKLERRELKQAGLKGLAKEVL 157 Query: 128 GINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 G+ +SK + S+W+ L Q+QYA D A+ + E Sbjct: 158 GLRLSKPKSISMSNWAWAILQHRQIQYACIDAFVSLAIGKKLME 201 >gi|157311100|ref|YP_001469095.1| gp096 [Lactococcus phage KSY1] gi|108861440|gb|ABG21639.1| gp096 [Lactococcus phage KSY1] Length = 895 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 23/154 (14%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 A D ET GL +++ +VQ D P + + +KR +H G+ Sbjct: 20 AADIETTGLDYFTEKITLVQYGTDDEH------QQWYTEEPTIEDIKELKKRTLFWHNGK 73 Query: 84 FDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGIN---------ISK 133 FD + Y FGV + P+ + + Y++ LK +LLG+ +SK Sbjct: 74 FDTKFIAYHFGVML-PIHGDSMVLLH-ALGYSDSLSLKVAAAKLLGVENWDIEHDLKLSK 131 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 D A L + +Y DV + +AL Sbjct: 132 G---PDEEASKL--KFFEYGLKDVKYTYALMRLL 160 >gi|146173426|ref|XP_001018834.2| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|146144882|gb|EAR98589.2| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 634 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 13/142 (9%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 R I D +C +++S D II + + L + +D++ Sbjct: 107 LLRNAGVICWDVHFNTYRSFYGFVCFLEISTIDQD-YIIDCLSLRNEIHRLKEIFLDKQI 165 Query: 76 EKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS-- 132 KI + I L+ FG+ + Y + L + L G ++ Sbjct: 166 VKITLDLQEKINWLYRDFGILNIVNSID-------LSLYLKELNLPSIISYLCGTLLNYP 218 Query: 133 --KAQQSSDWSADDLSDEQLQY 152 K Q+ D+ LS ++ Y Sbjct: 219 FQKILQNFDYRKRPLSLNEINY 240 >gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] Length = 921 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 67/201 (33%), Gaps = 24/201 (11%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---------- 68 +AVDTET L + +L V LS G I G + + Sbjct: 337 QKGQVAVDTETDNLDATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQMDLLLLVK 396 Query: 69 ----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L D KI ++D+ VL G+ V+P T + S + HG+ + Sbjct: 397 KLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELSL 455 Query: 125 ELLGIN-IS-K-----AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 IS K + + ++ + +YAA D L +L G + Sbjct: 456 LYFDHQPISFKSVCGTGKSAITFNHVPIPAA-TRYAAEDADITFRLWALLKPRLSSDGAT 514 Query: 178 DLATSCCNFL-MDRAELDLLG 197 + L A ++ G Sbjct: 515 RIYEEVDRPLPPVIARMEQAG 535 >gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] Length = 930 Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E + A A ++V A DTET L L + + G I +A +AP Sbjct: 335 LDEAALEALIARLQHVGCFAFDTETDSLDVLSANLVGISCADAPGQAYYIPLAHDYLDAP 394 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 L +L DEK K+ ++DI V+ G+ +R V F T + S + + Sbjct: 395 AQLDREWVLARLQPLLEDEKVAKVGQNLKYDIGVMARH-GIILRGVAFDTMLESYVLNSV 453 Query: 114 TNQHGLKDNLKELLGIN 130 +H + L Sbjct: 454 AGRHDMDSLAARHLDHK 470 >gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] Length = 890 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 307 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 366 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 367 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 425 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 426 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 485 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 486 VYREIEMPLVPVLSRIERTG 505 >gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 921 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 67/201 (33%), Gaps = 24/201 (11%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---------- 68 +AVDTET L + +L V LS G I G + + Sbjct: 337 QKGQVAVDTETDNLDATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQMDLLLLVK 396 Query: 69 ----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L D KI ++D+ VL G+ V+P T + S + HG+ + Sbjct: 397 KLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELSL 455 Query: 125 ELLGIN-IS-K-----AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 IS K + + ++ + +YAA D L +L G + Sbjct: 456 LYFDHQPISFKSVCGTGKSAITFNHVPIPAA-TRYAAEDADITFRLWALLKPRLSSDGAT 514 Query: 178 DLATSCCNFL-MDRAELDLLG 197 + L A ++ G Sbjct: 515 RIYEEVDRPLPPVIARMEQAG 535 >gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] Length = 918 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 17/163 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAGQKNAPNLVGMLVDE 73 + I++DTET P R L + + + + A P ++ L D Sbjct: 339 LKEAKQISLDTETDSPEPMRANLVGISFCMDEKKAYYLPLGHQLAVNLPLPEVLRHLEDA 398 Query: 74 KREKIF--HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + K+ H +FD+ VL P+F T +A+ + T + L+ L + Sbjct: 399 LKGKLLLGHNLKFDLIVLARNGLELDNPLFDTMLAAYILDPGTLNYSLETCALNELNYKM 458 Query: 132 ---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 K Q + D + ++ Y+A D ++ L Sbjct: 459 IPISDLIGKGKNQSTFD-LVEP--EKACIYSAEDAWAVYKLYP 498 >gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457] gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457] Length = 851 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 268 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 327 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 328 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 386 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 387 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 446 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 447 VYREIEMPLVPVLSRIERTG 466 >gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004] gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus bovienii SS-2004] Length = 932 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 24/178 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQK--NAPN----- 65 + A + DTET GL + +V ++ G+ V+ + G +AP Sbjct: 346 LKQAPAFSFDTETDGLDTLT--VNLVGMSFAIAVGESEVEAAYLPLGHDYLDAPEQLDLH 403 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L +L D KI +FD VL VF T + S + + + +H + Sbjct: 404 EVLAALKPLLEDANLPKIGQNLKFDRGVLARYDVALNGIVFDTMLESYVLNSVSGRHDMD 463 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172 LG + ++ + L+ Q+ +YAA D L ++ Sbjct: 464 SLADRHLGYKTTTFEEIAGKGKKQLTFNQIPLEEAAKYAAEDADVTLRLHQVMYPQID 521 >gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] Length = 931 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 33/192 (17%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS------PGDGTVDIIRIAAGQKNAP 64 +P + DTET L ++ V L+ G + + ++ Sbjct: 351 LPELL---KQKEVCFDTETTSLDEMEAQI--VGLAFSWEVHKGYYILFPEDFSLAKEWLS 405 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNL 123 L E KI ++D+ +L + VR +F T IA L +H + Sbjct: 406 LLKPFFEAENILKIGQNLKYDLKILANY-DIEVRGQLFDTMIAHYLLNP-DMRHNMDLLA 463 Query: 124 KELLGIN-------ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEK 170 + L I K LS + Q +YA D L+ F Sbjct: 464 EAYLSYAPVAIETLIGKK------GKGQLSMCSVPAELQKEYAVEDTDVTLQLKHTFLPL 517 Query: 171 LQRLGRSDLATS 182 L++ + L T Sbjct: 518 LEKDKMTPLFTE 529 >gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB] gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB] Length = 928 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A D ET L + + + G + +A +AP+ L Sbjct: 345 LKNSEVFAFDLETDALDTLSANIVGISFAVAPGEAAYLPVAHDYLDAPDQLDRAAVLAQL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE K+ ++D VL + + + F + S + + +H + Sbjct: 405 KPLLEDENAWKVGQNLKYDRGVLKNY-DIELAGIKFDAMLESYILNSVVGKHDMDSLAAR 463 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 L Q+ + + L+ Q+ YAA D L L+ +L++ Sbjct: 464 WLNHKTVTFQEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKE 518 >gi|195443106|ref|XP_002069280.1| GK21051 [Drosophila willistoni] gi|194165365|gb|EDW80266.1| GK21051 [Drosophila willistoni] Length = 587 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%) Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 L D LG ++K+ Q S+W+ L EQ+ YAA D L + ++ Sbjct: 502 LTDLTLLCLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLVYNILIDR 553 >gi|154275864|ref|XP_001538777.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150413850|gb|EDN09215.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 808 Score = 55.4 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 18/150 (12%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQK-------NAPNLVGMLVDEKREKIFHYGRFDIAVL 89 D + ++QL+ + I +A +P L +L K+ R D L Sbjct: 618 DNVSVIQLAS-KERIAIFHLALFNPANSLQHLLSPTLKRILESPDIVKVGVAIRADCTRL 676 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKELLGINISKAQ--QSSDW 140 + G+R + ++ + + N L ++E LG+ + K + W Sbjct: 677 YKYLGIRTDNICEVSRLHKVVKHHLNPKLIDKRLVNLAQQVEEHLGLPLDKDPEIRCGGW 736 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEK 170 S L+ Q+QY A+D L K Sbjct: 737 SKK-LNYRQVQYVATDPYAALQLFHVLEAK 765 >gi|75759443|ref|ZP_00739536.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493056|gb|EAO56179.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1015 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 38/210 (18%) Query: 21 DAIAVDTETLGLM-PRRDR-------LCIVQLSPGDGTVDIIRI-------AAGQKNA-- 63 +AVDTET GL + R + ++ ++ +G G + Sbjct: 128 KVLAVDTETTGLDITFKSRTGEHDECVGLI-ITGKEGESFYFPFKHTQFDNLCGGDDWYF 186 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR---LTRTYTNQHG 118 + +L + I H FD V++ G+ + V T A L Y G Sbjct: 187 METYMKPLLEKKDI--IVHNASFDWKVIYIY-GIVLNVVIDT-FAVFSLTLNAKYQTPVG 242 Query: 119 LKDNLKELLG---INISKAQQSSDWSA-----DDLSDEQLQ-YAASDVVHLHALRLQFTE 169 LK + LL + + ++ D+ + DL E ++ YA +D + AL E Sbjct: 243 LKHLISLLLKRDSLELDDLCKNGDFGSIDQNFADLPKELVRLYACADADNTLALYHYMLE 302 Query: 170 --KLQRLGRSDLATSCCNFLMDRAELDLLG 197 L+ G + + F + G Sbjct: 303 TNMLENWGATKVVQFESIFACAIGYSEFHG 332 >gi|123498604|ref|XP_001327439.1| Zinc finger, C2H2 type family protein [Trichomonas vaginalis G3] gi|121910368|gb|EAY15216.1| Zinc finger, C2H2 type family protein [Trichomonas vaginalis G3] Length = 589 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 9/79 (11%) Query: 100 VFCT-----KIASRLTRTYTNQHGLKDNLKELLG--INI--SKAQQSSDWSADDLSDEQL 150 +F T + Y + ++EL+G + K SDW+ L+ +Q Sbjct: 129 MFDTTFGIQDVQMTYLEPYQISINFQLMVEELIGSPKALFKDKNISRSDWTVRPLTIKQC 188 Query: 151 QYAASDVVHLHALRLQFTE 169 YA DV L+ + E Sbjct: 189 LYAVFDVYALYLCYSKLLE 207 >gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] Length = 957 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 43/197 (21%) Query: 19 YVDAIAVDTETLGLMPRRDRL------------CIV------QLS------------PGD 48 +AVDTET L L C + Q++ Sbjct: 354 QAKLVAVDTETDSLDSMSANLVGISFGLANGEACYIPLTHKEQVTLEPQQSDLFAEPTEA 413 Query: 49 GTVDIIRIAAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103 T+ +A Q N L +L + +KI ++D+ + GV+V V F T Sbjct: 414 ETITSFELAKNQLNLTACVTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVEGVAFDT 472 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157 + S + T +H + + + LG + ++ + + L+ +++ QYAA D Sbjct: 473 MLESYTLNS-TGRHNMDELAERYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASQYAAEDA 531 Query: 158 VHLHALRLQFTEKLQRL 174 L +L + Sbjct: 532 DVTMKLHQVLAPELDKA 548 >gi|290490726|dbj|BAI79323.1| WRN helicase [Gallus gallus] Length = 1498 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 24/147 (16%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF------H---YGRFD-- 85 ++ ++QL + + I++ L +L DE +K+ H G F+ Sbjct: 105 AKIALIQLCVTEEKCYLFHISSMSGFPKGLKRLLEDETIKKVGVGIEGDHWKLMGDFEVK 164 Query: 86 IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSAD 143 + V + C ++ L +K L G + K+ + +W Sbjct: 165 LKSFVELADVANEKLKCKEV-----------WSLNGLVKHLFGKQLLKDKSIRCGNWEKF 213 Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEK 170 L +E+ YAA+D + + Sbjct: 214 PLDEERKLYAATDAYAGFIIYQKLKNM 240 >gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587] gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2] gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587] gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2] Length = 886 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 303 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 362 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 363 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 421 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 422 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 481 Query: 180 A--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 482 VYREIEMPLVPVLSRIERTG 501 >gi|328874971|gb|EGG23336.1| hypothetical protein DFA_05468 [Dictyostelium fasciculatum] Length = 455 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 10/171 (5%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPR----RDRLCIVQLSPGDGTVDIIRIAAGQ 60 ++ +G +P + + +D E L ++ ++QLS G+ T + RI + Sbjct: 278 KLLDGKMPWDVKVSDAVVLGMDCEWPALRKFLTKEDPKISLIQLSNGEYTA-LFRICKFE 336 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + LV +L K+ H D L + + V +A N + Sbjct: 337 EIPDALVQLLTSRSILKVGHGLSKDANRLNKEQKICMDGVDD--LAYHPVTYRCNPDSIN 394 Query: 121 DNLKELLGINISKAQQ--SSDWSA-DDLSDEQLQYAASDVVHLHALRLQFT 168 D + L NI++ S+W DL+ EQ+ AA L + Sbjct: 395 DMVAMFLNTNITRRASVIRSNWGTSQDLTHEQILSAAQRSHFSRQLYFKLQ 445 >gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 976 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 44/208 (21%) Query: 21 DAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIA-------------AGQKN 62 + +A+DTET L P L C+ G+ D+ I A + Sbjct: 381 EIVALDTETNSLNPLDAELVGIGFCL-----GEEINDLFYIPLSHQSQKKEMNQLAIEDV 435 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121 NL + ++EK +FD + + G+ +R V F T +A + +HGL + Sbjct: 436 FFNLRSWIESPEKEKTLQNCKFDRQIFYNH-GLNLRGVTFDTLLADYILNNQ-EKHGLSE 493 Query: 122 NLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 G + +K D ++D Y DV+ + F E+ Sbjct: 494 ISFREFGFKPPTFKETVGKNKDFSFVD-----INDA-STYCGYDVLLTFKIAKIFKERFN 547 Query: 173 RLGR--SDLATS-CCNFLMDRAELDLLG 197 + + L +E+++ G Sbjct: 548 NENKDLTKLFKEIELPLEPVLSEMEMNG 575 >gi|307202739|gb|EFN82030.1| Werner syndrome ATP-dependent helicase [Harpegnathos saltator] Length = 200 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 11/145 (7%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + D E + + Q+ D ++ I + +K + L K + + Sbjct: 50 PVGFDLEWPFN-FQTGSGKTALAQICLEDSVSYLLHIYSLKKLPAAFIEFLCHPKVKLVG 108 Query: 80 HYGRFDIAVLFYTFGVRVR------PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + D+ L F + + + L+ LL I K Sbjct: 109 VNIKNDVWKLGRDFKEFPAQKVVENSCIDCGTFANQVLKRSCRWSLEKLTAYLLKKRIDK 168 Query: 134 --AQQSSDWSADDLSDEQLQYAASD 156 + S W LSD Q YAASD Sbjct: 169 NPEVRKSKWHVQPLSDAQKIYAASD 193 >gi|242058231|ref|XP_002458261.1| hypothetical protein SORBIDRAFT_03g030160 [Sorghum bicolor] gi|241930236|gb|EES03381.1| hypothetical protein SORBIDRAFT_03g030160 [Sorghum bicolor] Length = 226 Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 9/153 (5%) Query: 23 IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +DTE R++R+ ++QL G + +I L L + Sbjct: 49 VGLDTEWRIVHDEDGRRKNRMAVLQLCVG-HRCLVYQIFHADYVPDALRDFLACPDHRFL 107 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCT-KIASR-LTRTYTNQHGLKDNLKELLGINISK--A 134 D+ L G+ V +A+ L R LK +E++G+ I K + Sbjct: 108 GVAVDGDVKRLSEDCGLVVADAADLRHVAAEVLARPELRTASLKTLTREVMGVLIDKPKS 167 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 S W A LS +Q+QYA D + + Sbjct: 168 VTMSKWDARRLSVKQVQYACVDAFVSYEIGRLL 200 >gi|17509615|ref|NP_493360.1| hypothetical protein W05H12.2 [Caenorhabditis elegans] gi|3873839|emb|CAB02702.1| C. elegans protein W05H12.2, partially confirmed by transcript evidence [Caenorhabditis elegans] gi|3880545|emb|CAB04921.1| C. elegans protein W05H12.2, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 329 Score = 55.0 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 62/184 (33%), Gaps = 47/184 (25%) Query: 3 TIRVHEGDIPAECAARYVD-----AIAVDTETLGL-MPRRDRLCIVQLSPGDGTVDIIRI 56 TIR+ E A + I DTE+ + RDRL ++ D I+ Sbjct: 159 TIRITENFFEANRFLAPFNRQRTLPIFFDTESAHFPVRHRDRLALLTFCDIDTQ-TIVLW 217 Query: 57 AAGQKNAPNLVGMLVDEKREKIFH-----------YGRFDIAVLF---YTFGVRVRPVFC 102 + N P L + H + F + L ++ R + Sbjct: 218 RIHKTNEPELRRI----------HHFIAQLGQTRTFAVFGMETLLPPDRVLNLQPRSM-- 265 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 LK E+ GI ++K + SDW + L +Q+ YA D V LH Sbjct: 266 --------------PSLKQLALEVTGIILNKEESLSDWVREVLRIDQIHYACMDAVILHH 311 Query: 163 LRLQ 166 + + Sbjct: 312 IYDE 315 >gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015] gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015] Length = 900 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 20/188 (10%) Query: 6 VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 V + D R + DTET L + + V + + + A Sbjct: 304 VLKQDQLDRWLVRLAQFELFSFDTETTSLNYMQAEIVGVSFAVEYNKAAYVPLGHDYPGA 363 Query: 64 PN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRT 112 P L +L D + K+ + ++D VL G+ ++ + T +AS + + Sbjct: 364 PEQLDRDAVLNALKPLLEDTGKAKVGQHLKYDKNVLARY-GIELKGIAHDTMLASYVLNS 422 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQ 166 +H + + L + + + A L+ Q+ YAA D L + Sbjct: 423 VAGRHDMDSLAERYLDRHTVHYEDIAGKGAKQLTFNQIDLEQAAPYAAEDADITLQLHRE 482 Query: 167 FTEKLQRL 174 KLQ Sbjct: 483 LWPKLQTE 490 >gi|116198139|ref|XP_001224881.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51] gi|88178504|gb|EAQ85972.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51] Length = 736 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 21/172 (12%) Query: 21 DAIAVDTETL----GLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNA-PNLVGMLVDE 73 + D E + R + ++QL+ G + + A P L + + Sbjct: 464 KVVGFDLEWMAYANKYASARQNVSLIQLASPTRIGLFHVAIFPKDDEFATPTLKEFMQNP 523 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLK 124 K+ + D L + R F RL + + L + Sbjct: 524 AITKVGVSIKGDCTRLSNYLQIETRGQFELSHLYRLVKYSESGEHKSINKKLVSLSTQVN 583 Query: 125 ELLGINISKAQQSS-DWSADDLSDEQLQYAASDV---VHLHALRLQFTEKLQ 172 E LG+ + K + DW+ L Q+ Y++SDV VHL+A+ +KL Sbjct: 584 EYLGLPMYKGDVRTGDWTKR-LDMPQIIYSSSDVYAGVHLYAILNHRRQKLD 634 >gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5] Length = 958 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 12/187 (6%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA--PNLVGMLVDEKREKI 78 + DTET G DR+ + L+ I + + +++ KI Sbjct: 387 EEFCFDTETTGFDIFNDRIVGMSLAVNPFEAWYIPFKEENTAEYTEIVRPLFENDRIAKI 446 Query: 79 FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +FD+ VL G+ +R + T I L + +H + ++ L + + Sbjct: 447 GQNIKFDLMVL-RQLGLEIRGRKYDTMILHYLLDPES-RHNMNALAEKYLNYKPIEIETL 504 Query: 138 SDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA-TSCCNFLMDR 190 + L+ + +YAA D L+ +++ LG L + Sbjct: 505 IGKGSKQLTMDLVNVERVKEYAAEDADVTLRLKHALYPQIEELGLQHLYFEIEEPMIAVL 564 Query: 191 AELDLLG 197 A++++ G Sbjct: 565 ADIEMAG 571 >gi|194870203|ref|XP_001972607.1| GG15614 [Drosophila erecta] gi|190654390|gb|EDV51633.1| GG15614 [Drosophila erecta] Length = 235 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 9/125 (7%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 I I A P L +L ++ K+ HY L + + + +F T +A L R Sbjct: 37 IYDIKALGSIFPELAKILEADQPRKVVHYSHRIADHLLHRQRISLGGIFDTFVALCLKRH 96 Query: 113 YTNQHGLKDNLKELLGINISKA---------QQSSDWSADDLSDEQLQYAASDVVHLHAL 163 L + + + +++ K + +++A L+ Q++Y A V H + Sbjct: 97 ERFPFSLSEAISFVFRLSMDKILCDEVTGACESRRNFTARPLTRSQIRYMAKMVHLQHIM 156 Query: 164 RLQFT 168 + Sbjct: 157 HHRLN 161 >gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231] gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231] Length = 898 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A D ET L + + + + +A + L Sbjct: 316 LAGAEVFAFDLETTSLNYMDAEIVGLSFAVEPARAAYVPVAHIGQGVSPQLERGHVLEQL 375 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D +R K+ ++D++VL + + +R V F T + S + + +H + + Sbjct: 376 RPLLEDPRRAKLGQNLKYDMSVLAHY-DIALRGVRFDTMLESYILDSTATRHDMDSLALK 434 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD- 178 LG K + + A L+ +Q+ +YAA D L KL++L + Sbjct: 435 YLGHRTIKFEDVAGKGAKQLTFDQVAIERATEYAAEDADIALRLHRVLYPKLRQLPGPER 494 Query: 179 -LATSCCNFLMDRAELDLLG 197 L + ++ G Sbjct: 495 VFHAIEMPLLPVLSRMERTG 514 >gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] Length = 923 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 24/181 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + +A A DTET L L V + +G + +A +AP L Sbjct: 340 LKSAEAFAFDTETDSLDYMVANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVLAQL 399 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + KI ++D +V+ G+ ++ + + T + S + + +H + Sbjct: 400 KPLLEDPNQAKIGQNLKYDASVIARY-GIEMQGIKYDTMLESYVYNSVVGRHDMDSLALR 458 Query: 126 LL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGR 176 L I+ + L+ Q+ YAA D L K+ + Sbjct: 459 YLEHKNISFEEIAGK---GKGQLTFNQIDLEQAGPYAAEDADITLRLHNALYPKVSADEK 515 Query: 177 S 177 Sbjct: 516 L 516 >gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1] gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1] Length = 903 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 23/128 (17%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122 P L+ +L ++ K H ++ + L + G ++ + F T +++ L G+KD Sbjct: 385 PGLIALLTNKNITKTAHNAKY-LMNLLASAGQEIQGLDFDTMLSAHLLGE--KNLGIKDL 441 Query: 123 LKELLGINIS----------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKL 171 + E G+ I+ K + S A +LS+ QL +D + L+ F +L Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFS---ASELSEAAQL---VAD--YTFRLKGLFAAQL 493 Query: 172 QRLGRSDL 179 DL Sbjct: 494 AETNLIDL 501 >gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62] gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62] Length = 930 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 70/218 (32%), Gaps = 35/218 (16%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + P Sbjct: 336 TTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIAFQAGEAVYIPVGHSLTAVP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSGRWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQF-----TEKLQRLGRSDL--ATSCCNFLMDRAELD 194 + ++L+ + +L A + ++D Sbjct: 510 EARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQID 547 >gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] Length = 985 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 81/237 (34%), Gaps = 41/237 (17%) Query: 1 MTTIRVHEGDIPAEC-----AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDI 53 M I + ++ + +A+DTET L P + L + L G+ + Sbjct: 360 MPQIISNNSELSVLIENLLQLDDPIQPVAIDTETTSLNPFQSELVGIGLCWGERPEQIAY 419 Query: 54 IRIAAGQKNAPN----------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 I + ++ L L + K+ ++D ++F +G+ + Sbjct: 420 IPLGHITEDLFEDQSSNLQLPLIDVIKGLSPWLGSSEHPKVLQNAKYD-RLIFLQYGIPL 478 Query: 98 RPVF-CTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQ 149 V T +A L T++H L+ K G + K + + S +S Sbjct: 479 EGVIMDTLLADYLCDV-THRHSLEAMAKREFGFTPTNFNEIVGKDETFKNVS---ISTAS 534 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGR--SDLATS-CCNFLMDRAELDLLGWENVDI 203 L Y DV L L+ +G+ +L A+++ G +DI Sbjct: 535 L-YCGMDVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGI-RIDI 589 >gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] Length = 932 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 51/162 (31%), Gaps = 19/162 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKI 78 + DTET + L + + K +E K+ Sbjct: 362 VCFDTETTSVNALEAELVGISFCWSAHKGYYVPFPTDKAATTKLLETFRPFFENEHIGKV 421 Query: 79 FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130 ++D+ VL + VR +F T IA L +H + + L Sbjct: 422 GQNLKYDLKVLQNY-NIEVRGALFDTMIAHYLLNP-DMRHNMDILSETYLNYTPIAIESL 479 Query: 131 ISKA-QQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170 I K Q S + +Q+ +YA D L+ F E+ Sbjct: 480 IGKGKAQRS---MRTVPLDQVKEYAVEDADVTWQLKNVFKEE 518 >gi|330927778|ref|XP_003301996.1| hypothetical protein PTT_13665 [Pyrenophora teres f. teres 0-1] gi|311322891|gb|EFQ89918.1| hypothetical protein PTT_13665 [Pyrenophora teres f. teres 0-1] Length = 314 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 25/136 (18%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ----HGLKD 121 L ML DEK K+F R D LF FGV ++ + ++ TR T +GL Sbjct: 92 LKDMLEDEKIPKVFFDVRNDSDALFTHFGVALQGIEDVQLMESATRKTTASRKYLNGLAK 151 Query: 122 NLKELL------------------GINISKAQ---QSSDWSADDLSDEQLQYAASDVVHL 160 ++ L G + KA+ ++ + D+ + Y DV HL Sbjct: 152 CVENKLPTRHGGGGLAAWKLAKEKGERLFKAEHGGSYEVFNQRPIPDDIISYCVGDVRHL 211 Query: 161 HALRLQFTEKLQRLGR 176 LR F + R Sbjct: 212 PELRDTFYRQQTHQWR 227 >gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1] gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1] Length = 922 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 15/193 (7%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------PNLVGM 69 + IA+DTET + + + +S + I I +KN+ + Sbjct: 350 LKKASYIAIDTETTSINVYESNIIGISVSFKEFESYYIPIETKEKNSIGKDYIIQKFNEL 409 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + + I +FD VL + F T IA+ + T + L + L Sbjct: 410 FNSQPKL-IGQNYKFDYKVLKRHGFNVISAYFDTMIAAYVIDPNT-KVSLDFLAAKYLMH 467 Query: 130 NISKAQ----QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 K + Q S L YAA D L +KL+ L + Sbjct: 468 KNIKYEEIVPQHSTLKDIPLEIA-SNYAAEDADITFRLFNILRKKLKEDNLESLMKNIEM 526 Query: 185 NFLMDRAELDLLG 197 F E++ G Sbjct: 527 PFSNVIIEIEENG 539 >gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17] gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17] Length = 921 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 57/184 (30%), Gaps = 35/184 (19%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN------------ 62 AR+ IA+DTET + L V L I + G + Sbjct: 332 ADARHQGFIAIDTETSSTDATQAELVGVSLCLSPNKACYIPLGHGGTDLLSEVPVQIPVA 391 Query: 63 --APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + + D KI +FD+ VL G+ + P T + S + HG+ Sbjct: 392 EALERIKALCEDPSVLKIGQNLKFDMIVLGER-GISIAPHDDTIVMSFDLDAGLHGHGMD 450 Query: 121 DNLKELLGIN--ISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQF 167 + L K + +QL +YAA D L +F Sbjct: 451 ELAATHLSHTCLAFKEVVGT-------GKKQLGFHEVDLKTATRYAAEDADVTLRLWKRF 503 Query: 168 TEKL 171 +L Sbjct: 504 KARL 507 >gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34] gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus metallidurans CH34] Length = 934 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 64/177 (36%), Gaps = 26/177 (14%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------------AP 64 +A+DTET L P +L + LS G I +A + Sbjct: 351 APIVAIDTETTSLDPMLAQLVGISLSVEPGAAAYIPVAHRGPDVAGLENHGQLSREYVLE 410 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123 + G L D R K+ + ++D V GV +R + T + S + +Y N HG+ Sbjct: 411 RMRGWLEDPARPKLGQHLKYDSHVFANH-GVALRGIAHDTMLESYVLASYRN-HGMDSLA 468 Query: 124 KELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + LL + K + DL +YAA D L + +L+ Sbjct: 469 ERLLSLKTITYEEVCGKGANQIGFDQIDLPRA-TEYAAEDADVTLRLHRKMQPQLEA 524 >gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] Length = 938 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 30/200 (15%) Query: 2 TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRL-CI---VQLSPGDGT-----V 51 TI +G + A + + DTET L + R+ + VQ + G Sbjct: 332 KTIYT-QGQLTQWIAKLEAAELFSFDTETTSLDYMQARIVGLSFAVQSNVGSDEQPIIEA 390 Query: 52 DIIRIAAGQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100 + +A +AP L +L EK +K+ ++D +VL G+ ++ + Sbjct: 391 AYLPLAHDYIDAPKQLDLTTTLEKLRPLLESEKYKKVGQNLKYDRSVLLNH-GIELKGIK 449 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAA 154 F T + S + + T +H + + LG ++ + L Q+ YAA Sbjct: 450 FDTMLESYVLDS-TGRHDMDTLALKYLGHQCISFEEIAGKGKKQLPFNQISIIEAAPYAA 508 Query: 155 SDVVHLHALRLQFTEKLQRL 174 D L LQ E+L Sbjct: 509 EDADVTLRLHLQLFEQLSAE 528 >gi|326918448|ref|XP_003205500.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent helicase-like [Meleagris gallopavo] Length = 1569 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 14/142 (9%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYT 92 ++ ++Q+ + I++ L +L DE +K I L Sbjct: 176 AKIAVIQICVTKEKCYLFHISSMSGFPKGLKRLLEDETIKK----AGVGIEGDHWKLMSD 231 Query: 93 FGVRVRPVFCTKIA--SRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F V+++ ++A + L +K L G + K+ + +W L +E Sbjct: 232 FEVKLKSF--VELADVANEKLKCKEVWSLNGLVKHLFGKQLLKDKSIRCGNWEKFPLDEE 289 Query: 149 QLQYAASDVVHLHALRLQFTEK 170 Q YAA+D + + Sbjct: 290 QKLYAATDAYAGLIIYQKLKNM 311 >gi|302841203|ref|XP_002952147.1| hypothetical protein VOLCADRAFT_92754 [Volvox carteri f. nagariensis] gi|300262733|gb|EFJ46938.1| hypothetical protein VOLCADRAFT_92754 [Volvox carteri f. nagariensis] Length = 291 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 12/140 (8%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG--RFDIAVLFYTFGVR 96 + ++QLS V + +A G ++ + D E + G D +FG++ Sbjct: 155 VALLQLSSAGLVVVVRTLACGLPDSFR-TRFMEDSDVELVV-AGWSSNDERKFEESFGLQ 212 Query: 97 V--RPVFCTKIASRLTRTYTNQHGLKDNLKELL----GINISKAQQSSDWSADDLSDEQL 150 + + ++ ++ G++ ++ +L G+ SK SDWSA L EQL Sbjct: 213 TFWCEITDIQKVAKACGH--SKTGVRALVQAVLEPSVGMPKSKKVSMSDWSAPSLQPEQL 270 Query: 151 QYAASDVVHLHALRLQFTEK 170 +YA D + + Sbjct: 271 KYAILDAACTEHVFRCLEGR 290 >gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385] gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385] Length = 934 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVIAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529 Query: 180 ATSCCNF 186 Sbjct: 530 VYREIEI 536 >gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010] gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010] Length = 894 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 21/204 (10%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 A DTET L R+ V + G + + AP+ L + Sbjct: 314 AKLFAFDTETTSLDYLEARIVGVSFAVKAGEAAYLPLNHDYPGAPDQLDFDAVMADLKPL 373 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D + K+ ++D VL + ++ + T + S + + +H + K+ L Sbjct: 374 LEDPTKLKVGQNLKYDRHVLLNH-DINLQGIAHDTMLESYVLDSTATRHDMDSLAKKYLD 432 Query: 129 INISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDLA-- 180 + + + L+ Q+ YAA D L ++Q + Sbjct: 433 RDTIHFEDIAGKGKKQLTFNQIGLEEAAPYAAEDADITLQLHETLWPRIQAIPSLVKVYS 492 Query: 181 TSCCNFLMDRAELDLLGWENVDIF 204 L L+ G N+DI+ Sbjct: 493 ELEMPLLPVLNTLERNGV-NIDIW 515 >gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51] gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51] Length = 930 Score = 55.0 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 347 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVIAQL 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 407 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 465 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 466 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 525 Query: 180 ATSCCNF 186 Sbjct: 526 VYREIEI 532 >gi|308466384|ref|XP_003095446.1| hypothetical protein CRE_16334 [Caenorhabditis remanei] gi|308245291|gb|EFO89243.1| hypothetical protein CRE_16334 [Caenorhabditis remanei] Length = 275 Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 31/48 (64%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 LK+ +KE +G++I K + SDW+ + L+ +Q+ YAA D + +H + Sbjct: 220 ISLKEAVKESVGLDIDKRETMSDWTKEILTKDQIVYAAMDALAVHYIW 267 >gi|239502011|ref|ZP_04661321.1| 3'-5' exonuclease [Acinetobacter baumannii AB900] Length = 213 Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 9/114 (7%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ L +L + K+ K+ + D +F+ G+ + Sbjct: 70 LIQLATEHKAYL---FHVNSSTLKFLQPILSNPKQIKVGFGLKND-KHIFHKKGIELESC 125 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 +A + Q G++ + LLG ++K++ +S+W+ L+ +Q+ Sbjct: 126 VD--LAKGFNHFGFKQQMGVQKAVALLLGQYLAKSKKVGTSNWARKPLTSQQIS 177 >gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710] gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579] gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149] gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33] Length = 929 Score = 54.6 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E + A D I +DTET L L + ++ G I + AP Sbjct: 335 TTEAQLAALLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAGEAIYIPVGHSLTAAP 394 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 395 EQIDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 453 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 454 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 508 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 509 EAHLRAQMDAK 519 >gi|158288714|ref|XP_565822.2| AGAP000530-PA [Anopheles gambiae str. PEST] gi|157018702|gb|EAL41175.2| AGAP000530-PA [Anopheles gambiae str. PEST] Length = 195 Score = 54.6 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 14/147 (9%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IA D E R ++QL +++++ QK L+ +L + Sbjct: 48 PIAFDLEWPF-SFQTGPGRTALMQLCAAPDRCLLLQLSCLQKLPAALLQLLYHPRVL--L 104 Query: 80 H--YGRFDIAVLFYTFGVRVRPVF---CTKIASRLTRTYTNQ--HGLKDNLKELLGINI- 131 H + D L F + C ++ R + L ++++L + Sbjct: 105 HGVNVKNDFRKLARDFPAVSADLLIERCVELGQWYNRLHGTTGIWSLARLVEQVLRQRVS 164 Query: 132 -SKAQQSSDWSADDLSDEQLQYAASDV 157 K + S W+ LSD+Q YAA DV Sbjct: 165 KDKRVRMSKWNVLPLSDDQKLYAAIDV 191 >gi|308460613|ref|XP_003092609.1| hypothetical protein CRE_19499 [Caenorhabditis remanei] gi|308253010|gb|EFO96962.1| hypothetical protein CRE_19499 [Caenorhabditis remanei] Length = 275 Score = 54.6 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 31/48 (64%) Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 LK+ +KE +G++I K + SDW+ + L+ +Q+ YAA D + +H + Sbjct: 220 ISLKEAVKESVGLDIDKRETMSDWTKEILTKDQIVYAAMDALAVHYIW 267 >gi|184159750|ref|YP_001848089.1| 3'-5' exonuclease [Acinetobacter baumannii ACICU] gi|183211344|gb|ACC58742.1| 3'-5' exonuclease [Acinetobacter baumannii ACICU] gi|322509663|gb|ADX05117.1| Exonuclease putative [Acinetobacter baumannii 1656-2] Length = 213 Score = 54.6 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ L +L ++K+ K+ + D +F+ G+ + Sbjct: 70 LIQLATEHKAYL---FHVNSSTLKFLQPILSNQKQIKVGFGLKND-KHIFHKKGIELESC 125 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 +A + + Q G++ + LLG ++K++ +S+W+ L+ +Q+ Sbjct: 126 ID--LAKGFSHFGFKQQMGVQKAVALLLGQYLAKSKKVGTSNWARKPLTSQQIS 177 >gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088] gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088] Length = 908 Score = 54.6 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 24/178 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + G + +A AP+ L Sbjct: 326 LKEAGTFAFDTETNSLDYMEAELVGLSFCAEPGVACYVPVAHDYPGAPDQLSRDYVLNQL 385 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 +L D + +K+ + ++D+ VL G+ +R T + S + + +H + + Sbjct: 386 KDLLEDPQYQKVGQHLKYDMHVLANY-GIALRGFAGDTMLESYVLDSVGGRHDMDSLAER 444 Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 LG D A L+ Q+ YA D L T +L Sbjct: 445 YLGRR---TISFEDVAGKGAKQLTFNQVSLEQAVPYACEDADITWQLYEYLTNQLTAT 499 >gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 922 Score = 54.6 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 66/213 (30%), Gaps = 38/213 (17%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 A TET G + +L + + I + P L Sbjct: 331 LDKAPLFAFVTETNGGDAQHSQLVGLSFAVAPYEAAYIPLTHSYMGVPEQLDRDTVLKAL 390 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTRTYTNQHG 118 +L + + K+ + +F+ +L G+ V+ + F T + S + + +H Sbjct: 391 KPLLENPNKLKVGQHAKFETNILANCAIGGDQNNGILVQGIAFDTMLESYVLDSTATRHD 450 Query: 119 LKDNLKELLGINISKAQQSSDW------SADDLSDEQLQ------YAASDVVHLHALRLQ 166 + + LG Q +D+ L+ +Q+ YAA D L Sbjct: 451 MDSLALKYLG------QSKTDFQDIAGKGVKQLTFDQISLELAGPYAAEDADVTFRLHQA 504 Query: 167 FTEKLQRLGRSDLATS--CCNFLMDRAELDLLG 197 EKL + + A ++ G Sbjct: 505 LQEKLAATPSLGTVLNDIEMPLMPVLARIERQG 537 >gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] Length = 903 Score = 54.6 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 74/202 (36%), Gaps = 20/202 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 + A DTET L + ++ V + G + +A +AP L Sbjct: 321 LETAELFAFDTETTSLDYMQAQVVGVSFAVKTGEAAYLPLAHDYADAPQQLDRDETLKRL 380 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L + +K+ H+ ++D VL G+ + + T + S + + ++H + ++ Sbjct: 381 KPLLESARHKKLGHHLKYDRNVLLNH-GIELNGIEHDTMLESYVLNSTASRHDMDSLAQK 439 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKL-QRLGRSD 178 L + ++ + A + Q++ YAA D L +L G+ Sbjct: 440 YLDYRTTHYEEVAGKGAKQIPFSQVRIEDATPYAAEDADITLRLHEHLWPQLSAAEGQCR 499 Query: 179 LATS-CCNFLMDRAELDLLGWE 199 + + + ++ G + Sbjct: 500 VYREIEMPLVPVLSRMERTGVK 521 >gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] Length = 934 Score = 54.6 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 18/195 (9%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI E + A DTET L L + S +G + +A + Sbjct: 337 TIFTKEAFSAWLEKVNNAEVTAFDTETDSLDYMVANLIGLSFSVEEGEAAYVPVAHDYLD 396 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 AP L L DE + K+ ++D +VL + ++ + F T + S + Sbjct: 397 APEQLDRDWVLAQLKPYLEDETKAKVGQNLKYDASVLARY-DIEMKGIKFDTMLESYVYN 455 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165 + +H + L N ++ + L+ Q+ YAA D L Sbjct: 456 SVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQIALEEAAPYAAEDADITLRLHN 515 Query: 166 QFTEKLQRLGRSDLA 180 KL + + Sbjct: 516 VLHAKLVTDEKLNAV 530 >gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] Length = 602 Score = 54.6 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 32/183 (17%) Query: 14 ECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 + R + +D+ET GL R VQ + +I + G + L Sbjct: 29 DFVDRNHQILGLDSETTGLDIYSKGFRCRTVQFGSPEE-GWVIPVERGAVFREAAIAALR 87 Query: 72 DEKREKIFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLT-----RTYTNQHGLKD 121 R + H +D+ V GV + V TKI + L + H L++ Sbjct: 88 AADRF-VLHNASYDLQVFDKCLGVPMEELWPK-VVDTKILAHLVDPRGRKEGGTGHSLEE 145 Query: 122 NLKELLG-----------INISKAQQSSD---WSADDL--SDEQLQYAASDVVHLHALRL 165 + L +++K ++++ W L QL YA D + LR Sbjct: 146 LTRHYLDADVADTVKTLMTDLAKEEKTTKANVWKKVSLDNPRYQL-YAGMDPILACRLRQ 204 Query: 166 QFT 168 + + Sbjct: 205 KLS 207 >gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989] gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989] Length = 782 Score = 54.6 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 35/208 (16%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 D A DTET L + ++ V + G + AP L Sbjct: 193 LSAADLFAFDTETTSLDYMQAKIVGVSFAVNAGEAAYVPCGHDYMGAPEQLSLECVLAAL 252 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L + + K+ ++D VL + ++ + + T + S + + +H + + Sbjct: 253 KPLLENPNKHKVGQNLKYDKHVLLNH-DIDLQGIAYDTMLESYVCNSVATRHDMDSLARF 311 Query: 126 LL--------GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171 L + K A L+ Q+ YAA D L L Sbjct: 312 YLDRSTIHFEDVAGKK-------GAKQLTFNQIDIEIAAPYAAEDADVTLQLHQAIWPTL 364 Query: 172 QRLGRSDLATS--CCNFLMDRAELDLLG 197 Q+ L + ++ G Sbjct: 365 QQEPTLQHVLESIEIPLLPVISRIERNG 392 >gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana CCMP1335] gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana CCMP1335] Length = 745 Score = 54.6 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 29/159 (18%) Query: 44 LSPGDGTVD-IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-F 101 L G GT+ I + + L D K K++H FD VLF G+ V Sbjct: 71 LGDGPGTMLWIDNLDDAKDLLQEFKPWLEDAKVMKVWHNYGFDRHVLFNE-GINVLGFGG 129 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGI------------NISKAQQSSDWSADDLS--- 146 T +RL+ T ++ L+ ++LL + K +D + D+ Sbjct: 130 DTMHMARLSDTSRMKYSLESLTEDLLKQRKVPMKEIFGVPRLRKD--GTDGAIVDIPPVE 187 Query: 147 ---------DEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + ++Y+A D + L ++L ++G Sbjct: 188 VMQRDPKFRESWIKYSAMDAKSTYNLYQHLKKELLKVGW 226 >gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583] gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583] Length = 968 Score = 54.6 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 37/208 (17%) Query: 5 RVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRL---CI-VQ--------------- 43 + + DI + A + DTET L P + +L + +Q Sbjct: 361 TLLDEDILKKWLLEAEEQGYFSFDTETTSLDPMQAKLVGFSLALQPNKAAYIPLEHIEGG 420 Query: 44 --LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 L G+ V I Q+ L +L ++ KI ++D V+ + + +R Sbjct: 421 NDLFGGERIVGQI---ETQRALALLKPILENQAVLKIGQNMKYDWLVM-RQYDITIRSFD 476 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YA 153 T + S + + HG+ + LG K D +S Q+ YA Sbjct: 477 DTMLLSYVLDAGISTHGMDVLSERWLGHTPIAYKNLTC-D-GKKIVSFAQVDLKQATLYA 534 Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLAT 181 A D L +L G + + Sbjct: 535 AEDADITLRLWQVLKPQLVAQGMTKIYE 562 >gi|329903741|ref|ZP_08273602.1| 3'-5' exonuclease [Oxalobacteraceae bacterium IMCC9480] gi|327548221|gb|EGF32921.1| 3'-5' exonuclease [Oxalobacteraceae bacterium IMCC9480] Length = 184 Score = 54.6 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 13/163 (7%) Query: 13 AECAARYVDAIA-VDTETLGLMPRRDRLC----IVQLSPGDGTVDIIRIAAGQKNAPNLV 67 CAA + DTE +D++ IVQL+ + +++ A Sbjct: 24 EACAALLDSPVWGFDTE-SRPTFFKDQVSDGPHIVQLAT-QHRAWVFQLSDPDCVAQV-S 80 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL-TRTYTNQHGLKDNLKEL 126 +L K K D + GV V + S R Y G+K + L Sbjct: 81 ALLASPKHVKAGFGLGDDTRRILSKLGVAPAAVLD--LNSVFRARGYRKDMGVKGAVAVL 138 Query: 127 LGINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 SK +S+W+ L+D Q+ YAA+D + Sbjct: 139 FNRRFMKSKKAATSNWANPKLTDAQVLYAANDAYGAARVHDAL 181 >gi|323301144|gb|ADX35914.1| RE48478p [Drosophila melanogaster] Length = 353 Score = 54.2 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 158 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 214 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 215 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 274 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + + + Sbjct: 275 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 314 >gi|308191628|sp|B4I298|WRNXO_DROSE RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5' exonuclease Length = 354 Score = 54.2 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 159 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 215 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 216 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 275 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + + + Sbjct: 276 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 315 >gi|211938625|gb|ACJ13209.1| FI06575p [Drosophila melanogaster] Length = 361 Score = 54.2 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 166 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 222 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 223 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 282 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + + + Sbjct: 283 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 322 >gi|195569913|ref|XP_002102953.1| GD20178 [Drosophila simulans] gi|308191617|sp|B4QUF6|WRNXO_DROSI RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5' exonuclease gi|194198880|gb|EDX12456.1| GD20178 [Drosophila simulans] Length = 354 Score = 54.2 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 159 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 215 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 216 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 275 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + + + Sbjct: 276 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 315 >gi|195343302|ref|XP_002038237.1| GM18710 [Drosophila sechellia] gi|194133087|gb|EDW54655.1| GM18710 [Drosophila sechellia] Length = 347 Score = 54.2 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 152 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 208 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 209 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 268 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + + + Sbjct: 269 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 308 >gi|281362029|ref|NP_001163646.1| WRN exonuclease, isoform B [Drosophila melanogaster] gi|154243363|gb|ABS71854.1| 3'-5' exonuclease variant 1 [Drosophila melanogaster] gi|272477040|gb|ACZ94942.1| WRN exonuclease, isoform B [Drosophila melanogaster] Length = 354 Score = 54.2 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 159 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 215 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 216 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 275 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + + + Sbjct: 276 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 315 >gi|15291605|gb|AAK93071.1| GM14514p [Drosophila melanogaster] Length = 353 Score = 54.2 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 158 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 214 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 215 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 274 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + + + Sbjct: 275 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 314 >gi|28572965|ref|NP_650715.3| WRN exonuclease, isoform A [Drosophila melanogaster] gi|75026788|sp|Q9VE86|WRNXO_DROME RecName: Full=Werner Syndrome-like exonuclease; Short=DmWRNexo; AltName: Full=3'-5' exonuclease gi|28381346|gb|AAF55541.2| WRN exonuclease, isoform A [Drosophila melanogaster] gi|154243365|gb|ABS71855.1| 3'-5' exonuclease variant 2 [Drosophila melanogaster] Length = 353 Score = 54.2 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 158 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 214 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 215 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 274 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + + + Sbjct: 275 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 314 >gi|298712143|emb|CBJ33021.1| expressed unknown protein [Ectocarpus siliculosus] Length = 649 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 14/169 (8%) Query: 17 ARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAAGQK----NAPNLVGML 70 A + D E + P R + +VQLS DG + + ++ L +L Sbjct: 115 ASAPAVLGFDIE-WSVRPSGPRRQVALVQLSARDGYTVLFHLKYEERRRGILPTALKELL 173 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 V++ + R D+ LF ++GV +PV ++A L+ ELL Sbjct: 174 VNDTIQLAGVSVRGDLTHLFNSYGVHGTKPVDIGQLAGVHLHVKNGARSLQALTAELLHR 233 Query: 130 NISKAQ-QSSDWSADDLSDEQLQYAASD----VVHLHALRLQFTEKLQR 173 ++K ++S+W L+ +Q +YA D V+ + + + L Sbjct: 234 RLAKDAVRTSNWET-TLTKDQEKYAGLDSYAGVLLFYRIWARMDPILTE 281 >gi|195443798|ref|XP_002069580.1| GK11496 [Drosophila willistoni] gi|194165665|gb|EDW80566.1| GK11496 [Drosophila willistoni] Length = 349 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + + +++ +K LV +L K Sbjct: 154 PMAFDMEWPF-SFQTGPGKSSVIQVCVDERCCYVYQLSKLKKLPAALVALLNHPKVR--L 210 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 211 HGVNIKADFRKLQRDFPEVSADPLIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMD 270 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + ++ Sbjct: 271 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDLEQR 310 >gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] Length = 878 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 59/136 (43%), Gaps = 18/136 (13%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 L + +EK +K+ H + + V+ + + + F TKIA+ L + + + LKD ++ Sbjct: 378 LKNLFENEKIKKVCHDSKK-VYVVLNKHNITAKNIAFDTKIAAYLLQPSKSDYMLKDLIE 436 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD-LATSC 183 E+L +++ K + ++ ++ ++ + + + ++ + L T Sbjct: 437 EMLLLSL-KEY------------DNIK--INETYYIKDIYEKLEKDIKESNMEELLYTVE 481 Query: 184 CNFLMDRAELDLLGWE 199 + A ++ G+ Sbjct: 482 LPLVEVLASMECAGFR 497 >gi|322494281|emb|CBZ29580.1| hypothetical protein, unknown function [Leishmania mexicana MHOM/GT/2001/U1103] Length = 750 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 39/188 (20%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREKI 78 IA+D E L +CI+ L+ TV II + A L G+L K+ Sbjct: 550 IALDLEGRSLGRMGS-ICIITLATYS-TVYIIDVVMLGPEALRAGSPLKGVLESRDIMKL 607 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIAS--RLTRTYTNQHGLKDNLKELLGINISKAQQ 136 GR D LF+ + VR++ V +I+S L T G+K L + + Sbjct: 608 MFDGRADCDALFFLYCVRLQNVCDLQISSCFALFPTSPRLPGMKSV---FLALGL----- 659 Query: 137 SSD-----------------------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +D W L+D +QY A DV + A +L ++ +++ Sbjct: 660 FTDEDTGIKNAGRRLFNPLCGGSFDRWEERPLTDVLVQYCAVDVKYFFAAQLILSDHVEQ 719 Query: 174 LGRSDLAT 181 R A Sbjct: 720 GCRLGEAR 727 >gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73] gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans] Length = 922 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 18/175 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 R D A DTET L R L + + G D + + AP L Sbjct: 340 LRAADGFAFDTETDALDAMRANLVGLSFAIEPGHADYLPLGHDYPGAPVQLDRVQALAAL 399 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 +L D + K+ +G++D+ VL GV+V T + S + + ++H + K Sbjct: 400 APLLEDPAKRKVGQHGKYDLHVLRRH-GVQVHGYADDTMLESFVLNSTASRHDMDSLAKR 458 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 LG + K + + A ++ Q+ YAA D L + +L Sbjct: 459 YLGYDTVKYEDVAGKGAKQIAFSQVAIDDATGYAAEDADITLRLHRALSAQLDAE 513 >gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74] gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74] Length = 1024 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 19/196 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVD 72 +++ D+ET + P L + + G + + A + A + + Sbjct: 447 LSQQESLCFDSETTAIDPVEADLVGLSFAYRAGEAFYVPVPADRAEAQAIVDQFKPVFEN 506 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG--- 128 EK+ ++D+ +L GV V+ +F T IA L +H + L Sbjct: 507 PTIEKVGQNLKYDLLMLKKY-GVEVQGKLFDTMIAHYLIEPEM-RHNMDMMAMTYLNYSP 564 Query: 129 INISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + I L+ + + YA D L+ F +L++ L Sbjct: 565 VEIEALIGKK--GKGQLTMRDVDIQKVVDYAGEDADITLQLKHAFAPRLEKDNLHKLFDQ 622 Query: 183 -CCNFLMDRAELDLLG 197 + +L+L G Sbjct: 623 VEMPLVQVLTDLELEG 638 >gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1] gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1] Length = 920 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 20/174 (11%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNLVG 68 D +VDTET L L + S G + + L Sbjct: 340 ASDVFSVDTETTSLNYMDAELVGISFSLQAGEAAYVPVGHTAIGTPEQLPLDYVLNALKP 399 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L E KI ++D+ VL G+ + V F T + S + +H + + L Sbjct: 400 ILEAETPAKIGQNLKYDMNVLARY-GITLSGVRFDTMLESYVLDAAATRHDMDSLALKYL 458 Query: 128 GIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 G K + + L YAA D L ++Q+ Sbjct: 459 GQKTIAFEDVAGKGAKQITFDQVPLLQA-ATYAAEDADVTLKLHQALWPRVQKT 511 >gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804] gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii] Length = 948 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 29/184 (15%) Query: 13 AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-------- 62 E A+ D +A+DTET L + L + ++ G I +A + Sbjct: 363 DEWMAQAADTPLVALDTETTSLDEMQASLVGISMALAPGVACYIPLAHRGPDSAEQLPKR 422 Query: 63 --APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 + L D R K+ H+ ++D V T + + + ++ GL Sbjct: 423 EVLERMRAWLQDPARPKLLHHAKYDAHVFANEGVALAGIQDDTMLQAYVLESH-RGVGLN 481 Query: 121 DNLKELLG------INI----SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTE 169 D + LG + +K D+++ EQ YA D L Sbjct: 482 DLAQRYLGRGGITYEELCGKGAKQIGF-----DEVAVEQAGHYACEDADFTLQLHHALRP 536 Query: 170 KLQR 173 ++ Sbjct: 537 RVAA 540 >gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT] gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT] Length = 903 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 23/128 (17%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122 P L+ +L ++ K H ++ + L + G ++ + F T +++ L G+KD Sbjct: 385 PGLIALLTNKNITKTAHNAKY-LMNLLASAGQEIQGLDFDTMLSAHLLGE--KNLGIKDL 441 Query: 123 LKELLGINIS----------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKL 171 + E G+ I+ K + S A +LS+ QL +D + L+ F +L Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFS---ASELSEAAQL---VAD--YTFRLKGLFAAQL 493 Query: 172 QRLGRSDL 179 + DL Sbjct: 494 AEINLIDL 501 >gi|225450557|ref|XP_002277523.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 210 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 16/161 (9%) Query: 17 ARYVDAIAVDTE-------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 A + +D E ++ +LCI D I+++ + +L Sbjct: 52 AGKPMVVGLDIEWRPHPIRSMSNKSATLQLCI------DDKCLILQLFYMDEIPESLKSF 105 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLG 128 L D + DIA L +G+ +A + + GLKD E+ Sbjct: 106 LADSNFTFVGIEVGDDIAKLKNEYGLDCSRSADIRDLAMQRWPGRFRRPGLKDLAWEVTN 165 Query: 129 INI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + + K S+W A LS+ Q++YA D + + + Sbjct: 166 LPMKKPKHVSMSNWEARVLSENQIEYACIDAYASYKIGHKL 206 >gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] Length = 744 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 13/130 (10%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 I+ + L D K+ H +FDI +L G+++R + + T+ A RL Sbjct: 176 ILPQLSRDLVNETLRPFYEDPTVGKLAHNAKFDIHMLDRE-GIKLRGLTWDTQEAMRLLN 234 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSD-WSA------DDLSDEQLQYAASDVVHLHALR 164 LK+ + + L I + D + DDL L YAA D LR Sbjct: 235 ENEPSFALKNLVTKYLRIE---SSTYGDLFGKIGFDEVDDLEIA-LAYAAKDGDVTLKLR 290 Query: 165 LQFTEKLQRL 174 E L ++ Sbjct: 291 NFQREHLAKM 300 >gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C] Length = 968 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 27/192 (14%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRL---CI-VQ-----------LSPGDGTVD---IIRI 56 A+ + DTET L P + +L + +Q ++ D + I+ Sbjct: 373 LEAQEQGYFSFDTETTSLNPMQAKLVGFSLALQPGKAAYVPLEHVAEEDNLLGGGRIVPQ 432 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 QK L +L ++ KI ++D V+ + + T + S + Sbjct: 433 IETQKALALLKPILENQAVLKIGQNIKYDWLVMKQH-NIVMCSFDDTMLLSYALEAGIST 491 Query: 117 HGLKDNLKELLGIN-IS-KAQQSS-----DWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 HG+ + LG IS K S ++ DL L YAA D L Sbjct: 492 HGMDVLSERWLGHKPISYKDLTHSRRKIVSFARVDLKQATL-YAAEDADITLRLWQVLKP 550 Query: 170 KLQRLGRSDLAT 181 +L + + Sbjct: 551 QLVAQKMTKIYE 562 >gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C] gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C] Length = 1004 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 11/123 (8%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L D K+ ++ V+ G+ +R T + S + HG+ Sbjct: 475 LSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSFDDTMLMSYVLDAGNGAHGMDSL 533 Query: 123 LKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRL 174 + LG K + L+ D+ YAA D L +L Sbjct: 534 AERWLGHTPIAYKDVTGT--GRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAK 591 Query: 175 GRS 177 G + Sbjct: 592 GLT 594 >gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H] gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H] Length = 944 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 23/149 (15%) Query: 5 RVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDR-LCI-VQLSPGDGTVDIIRIAAGQ 60 V + D AR +AVDTET L R+ + + + ++PG + Sbjct: 337 TVTDMDALDRWIADARAAGVMAVDTETDSLNARQANMVGLSLSVAPGKACYVPFLHETIR 396 Query: 61 KNAPN-------------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 L +L D K+F ++D+ V + P+ Sbjct: 397 DLLEEDSTGEAFVRQLDRTEALERLKPLLQDASVLKVFQNAKYDLTVFRGAGIPEITPID 456 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGIN 130 T + S + G+ + + LG Sbjct: 457 DTMLISYAQSAGEHGQGMDELSELHLGHT 485 >gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179] gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179] Length = 925 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 13/122 (10%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69 A+DTET L + +L + + +G + + + P L + Sbjct: 348 ASLFAIDTETNSLNYMQAKLVGLSFALENGEAAYLPLQHHYLDCPQQLSWKTVLAALKTV 407 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D +K+ ++D+ +L GV ++ V+ T + S + T +H + D K L Sbjct: 408 LEDPNIKKVGQNLKYDLTILARH-GVELQGVVYDTMLESYTLDS-TGRHNMDDLAKRFLH 465 Query: 129 IN 130 + Sbjct: 466 HD 467 >gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83] gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83] Length = 1004 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 11/123 (8%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L D K+ ++ V+ G+ +R T + S + HG+ Sbjct: 475 LSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSFDDTMLMSYVLDAGNGAHGMDSL 533 Query: 123 LKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRL 174 + LG K + L+ D+ YAA D L +L Sbjct: 534 AERWLGHTPIAYKDVTGT--GRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAK 591 Query: 175 GRS 177 G + Sbjct: 592 GLT 594 >gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] Length = 963 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 71/221 (32%), Gaps = 29/221 (13%) Query: 5 RVHEGDIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 R H D P DA DTET L L + S G I + A Sbjct: 369 RYHTVDTPELMTSLAHYLSLQDAFCFDTETTSLDTTDAELVGLSFSYLAGEAFYIPVPAD 428 Query: 60 QKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYT 114 ++ A + +E EKI ++D+ VL G+ V + T +A L Sbjct: 429 RQQAEEIVGYFRAVFENENIEKIGQNIKYDMLVLKNY-GIEVHGKLSDTMLAHYLLEP-D 486 Query: 115 NQHGLKDNLKELLGINIS-----------KAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 +HG+ L K D + +++ YA D L Sbjct: 487 KRHGMDILAASYLNYEPVSITSLIGKKGGKQGNMRDVAIPEITQ----YAGEDADITFQL 542 Query: 164 RLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWENVDI 203 F+ +L ++ + L A ++ G +DI Sbjct: 543 HSIFSRELPKVNAAKLFNEVEMPLTKVLASMENTGV-RLDI 582 >gi|308191625|sp|B4N9D3|WRNXO_DROWI RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5' exonuclease Length = 356 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + + +++ +K LV +L K Sbjct: 161 PMAFDMEWPF-SFQTGPGKSSVIQVCVDERCCYVYQLSKLKKLPAALVALLNHPKVR--L 217 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 218 HGVNIKADFRKLQRDFPEVSADPLIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMD 277 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + ++ Sbjct: 278 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDLEQR 317 >gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] Length = 976 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 40/230 (17%) Query: 4 IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG- 59 I V++ ++ + R +++DTET L P L + L G+ D+ I G Sbjct: 361 IIVNDFELLDKLIKRLNKTNQIVSLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGH 420 Query: 60 ------------QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIA 106 + L + D K+EK +FD + F G+ ++ V F T +A Sbjct: 421 QIKKETPNQLSIEDVFSKLRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTFDTLLA 479 Query: 107 SRLTRTYTNQHGLKDNLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDV 157 L +HGL + L G + +K D +++ + Y DV Sbjct: 480 DYLLNNQ-EKHGLSEISFRLFGFKPPSFKETVGKNKDFSFVD-----INEASI-YCGYDV 532 Query: 158 VHLHALRLQFTEKLQRLGRSDLA----TSCCNFLMDRAELDLLGWENVDI 203 + F E+ + + +L +++++ G +DI Sbjct: 533 FLTFKIVKIFKERFSKE-KDELIKLFKEIELPLEPVLSQMEMNGIT-IDI 580 >gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142] gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142] Length = 970 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 54/144 (37%), Gaps = 35/144 (24%) Query: 22 AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLVG 68 +A DTET L PR+ L C G+ DI I G K +L Sbjct: 381 PVAWDTETTDLNPRQANLVGIGC----CWGNNPTDIAYIPIGHKQGKQLKKEQVLDSLRT 436 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +L K+F +FD + + GV VF T +AS + H L + + Sbjct: 437 ILESSDYPKVFQNTKFDRLIFKHQAINLDGV----VFDTMLASYVLHPE-KSHKLSELCE 491 Query: 125 ELL-GIN--------ISKAQQSSD 139 + L GI ISK Q +D Sbjct: 492 QYLEGITCQNYDELGISKKQTIAD 515 >gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 976 Score = 54.2 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 60/191 (31%), Gaps = 33/191 (17%) Query: 17 ARYVDAIAVDTETLGLM------------PRRDRLCIVQLS--PGDGTVDII-------- 54 AR +A DTE L R R V L+ G D++ Sbjct: 376 ARETGLLAFDTEASSLSAMKCDLVGVSFATRAGRAAYVPLAHVSPSGEADLLSDKAVEDE 435 Query: 55 --RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 + L +L D+ KI ++D V+ G+ + P T + S Sbjct: 436 IGPQLPIDEALAILKPVLEDDAVLKIGQNVKYDYLVMRRH-GITMAPFDDTMLISYALDA 494 Query: 113 YTN--QHGLKDNLKELLGINIS--KAQQSSDWSADDLS----DEQLQYAASDVVHLHALR 164 + HG+ + + LG K S A ++ D+ YAA D L Sbjct: 495 SASLAGHGMDELSERFLGHKPMSYKELCGSGKGARPIAACAIDKVTAYAAEDADVTLRLW 554 Query: 165 LQFTEKLQRLG 175 +L G Sbjct: 555 QVLKPRLVAEG 565 >gi|296415644|ref|XP_002837496.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633368|emb|CAZ81687.1| unnamed protein product [Tuber melanosporum] Length = 970 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 22/148 (14%) Query: 41 IVQLSPGDGTVD------IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94 ++Q++ +I + PNL +L E K D + G Sbjct: 664 LMQIANESDIALFHFARVPGQIPDFELVPPNLRRVLESENIMKAGVSVTGDAKRVSKFLG 723 Query: 95 VRVRPVF----------CTK-IASRLTRTYTNQHGLKDNLKELLGINISKAQQS-SDWSA 142 V +F + +A +TR L +E L + + K+ S+W+ Sbjct: 724 VHSAGIFELSDLWNLVHDVRTLAGSITRRL---IALSRLTEECLYLPLDKSASRISNWAV 780 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEK 170 +LS++Q+QYAA+D + + Sbjct: 781 -ELSNKQVQYAANDAYAAFRVFDALERE 807 >gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] Length = 928 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 66/190 (34%), Gaps = 37/190 (19%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCI------VQLSPGDGTVDIIRIAAGQKN------ 62 AA +AVDTET L C+ V L+ G + + G K+ Sbjct: 338 AAAHAEGLVAVDTETDMLD------CVSCALVGVSLAVGPNAACYVPVGHGGKDMFAEKP 391 Query: 63 --------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 L +L D+ KI ++DI VL G+ + P T + S Sbjct: 392 DQLPLALVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAPYDDTIVMSFDLDAGQ 450 Query: 115 N--QHGLKDNLKELLG-INIS-K-----AQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 + HG+ + K L I IS K + ++ L +YAA D L Sbjct: 451 SLAGHGMDEAAKTHLNHICISFKDVCGTGKSQISFAEVPLDKA-TEYAAEDADVTLRLWK 509 Query: 166 QFTEKLQRLG 175 F ++ G Sbjct: 510 LFKTRIANEG 519 >gi|195497632|ref|XP_002096183.1| GE25207 [Drosophila yakuba] gi|308191618|sp|B4PLB3|WRNXO_DROYA RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5' exonuclease gi|194182284|gb|EDW95895.1| GE25207 [Drosophila yakuba] Length = 354 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 159 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNLKKLPAVLVALINHPKVR--L 215 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 216 HGVNIKNDFRKLARDFPEVSAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 275 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + + + Sbjct: 276 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 315 >gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3] Length = 925 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 31/194 (15%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRL---CI-VQ-----------LSPGD---GTVDIIRI 56 A+ + DTET L P + +L + +Q ++ D G I++ Sbjct: 330 LEAKEQGYFSFDTETTSLDPMQAKLIGFSLALQPGKAAYIPLEHVAGEDDLWGDRRIVQQ 389 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 QK L +L ++ KI ++D V+ + +R T + S + Sbjct: 390 IETQKALALLKPILENQAILKIGQNIKYDWLVMKQY-NIVMRSFDDTMLLSYALEAGIST 448 Query: 117 HGLKDNLKELLGINISKAQQSSD--WSADDL-SDEQLQ------YAASDVVHLHALRLQF 167 HG+ + LG K+ D ++ + S Q+ YAA D L Sbjct: 449 HGMDILSERWLGH---KSITYKDLTYNGRKVNSFAQIDLKQATLYAAEDADITLRLWQVL 505 Query: 168 TEKLQRLGRSDLAT 181 +L + + Sbjct: 506 KPQLVAQRMTKIYE 519 >gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] Length = 937 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + Q AP Sbjct: 336 TTEAQFAAVLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSQTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDAK 520 >gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1] gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1] Length = 908 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 11/120 (9%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------QKNAPNLVG 68 + + ++DTET L +L + +S + I I A Sbjct: 336 SLKKAKYTSIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395 Query: 69 MLV-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 + + K I +FD +L + P F T IA+ L T + + L ++ L Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYL 452 >gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] Length = 903 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 23/128 (17%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122 P L+ +L ++ K H ++ + L + G ++ + F T +++ L G+KD Sbjct: 385 PGLIALLTNKNITKTAHNAKY-LMNLLASAGQEIQGLDFDTMLSAHLLGE--KNLGIKDL 441 Query: 123 LKELLGINIS----------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKL 171 + E G+ I+ K + S A +LS+ QL +D + L+ F +L Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFS---ASELSEAAQL---VAD--YTFRLKGLFAAQL 493 Query: 172 QRLGRSDL 179 DL Sbjct: 494 AETKLIDL 501 >gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805] gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805] Length = 988 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 68/197 (34%), Gaps = 28/197 (14%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-----------APNLV 67 + +AVDTET L P + +L + + G D+ I G + L Sbjct: 388 PTEPVAVDTETTDLNPFKAQLVGIGVCWGPWLSDLAYIPVGHQAPEGSQLPLEVVLEQLA 447 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 L K K ++D +L + V T +A R +H L + Sbjct: 448 PWLSSPKHPKALQNAKYDRLILLRHGLLLGGVVMDTLLA-DYLRDAAAKHSLDVMAERDY 506 Query: 128 GINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 GI K ++S ++ + L Y A DV L L E+LQ G Sbjct: 507 GITPTVFSDLVGKPKDGKASCFAEVPIDQAAL-YCAMDVHLTRKLALDLREQLQTSG--- 562 Query: 179 LATSCCNFLMDRAELDL 195 L+DR EL L Sbjct: 563 ---QQLTNLLDRVELPL 576 >gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304] Length = 937 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E + A D I +DTET L L + ++ G I + AP Sbjct: 335 TTEAQLAALLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAGEAIYIPVGHSLTAAP 394 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 395 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 453 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 454 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 508 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 509 EAHLRAQMDAK 519 >gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1] gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1] Length = 905 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 68/200 (34%), Gaps = 27/200 (13%) Query: 2 TTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 T+ ++ A + +A DTET GL +D+L S D + A Sbjct: 315 ATLITDNEELQKVLQALKPETIVAFDTETTGLDYEKDKLVGFSFSFNDDEAFYVPFAHFY 374 Query: 61 KNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL 109 P+ + + + + H +FD+ + + ++ + I + L Sbjct: 375 LGVPDQISEKDAALAMKKIFNSK---VVGHNIKFDLHFVSRFLNDDMLNIYSDSMILAWL 431 Query: 110 TRTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 + GL +LL + K + + + +L D +YAA D Sbjct: 432 INPES-ALGLDKLSDKLLDHTMLGFKDTVKKGETFA---SVELEDA-SKYAAEDAYITLK 486 Query: 163 LRLQFTEKLQRLGRSDLATS 182 L F EKL+ + L Sbjct: 487 LFNLFNEKLKLQDATHLIDE 506 >gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] Length = 879 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 22/197 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75 IA DTET GL + ++ + + + + + +K Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAI 372 Query: 76 EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E IF H ++D ++ FG+ + T I + L + +++ + D L Sbjct: 373 EVIFNHFVIGHNLKYDFKIIQNNFGLNLPQKYADTMILAWL-KNPSSRVNMDDLALRLFN 431 Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + K + ++++ +L +YAA D L F + L+ +LA Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLDFLKNLE-TPLLELAK 486 Query: 182 SC-CNFLMDRAELDLLG 197 +C +F+ ++ G Sbjct: 487 NCEFDFIKIIMMMEENG 503 >gi|195494004|ref|XP_002094655.1| GE21941 [Drosophila yakuba] gi|194180756|gb|EDW94367.1| GE21941 [Drosophila yakuba] Length = 274 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 9/125 (7%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 I I A P L +L ++ K+ HY L + + + +F T +A L R Sbjct: 91 IFDIRALGSIFPELAKILEADQPRKVVHYSHRIADHLLHRQRISLSGIFDTFVALCLERN 150 Query: 113 YTNQHGLKDNLKELLGINISKA---------QQSSDWSADDLSDEQLQYAASDVVHLHAL 163 L + + + GI + + + +++A L+ Q++Y A V H + Sbjct: 151 ERLPISLSEAISFVFGIPMDEILCEEVTGAYESRRNFTARPLTHNQIRYMARMVQLQHLM 210 Query: 164 RLQFT 168 + Sbjct: 211 HHRLN 215 >gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT] gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT] Length = 878 Score = 53.8 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 65/148 (43%), Gaps = 18/148 (12%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRT 112 I+ G K L + +EK +K+ H + + V+ + + + F TKIA+ L + Sbjct: 366 IKDKDGAKYFEILKNLFENEKIKKVCHDSKK-VYVVLKKHNIAAKNIAFDTKIAAYLLQP 424 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + + LKD ++E+L +++ K D+ ++ ++ ++ + + + ++ Sbjct: 425 SKSDYMLKDLIEEMLLLSL-KD------------DDNIK--INETYYIKDVYEKLEKDIK 469 Query: 173 RLGRSD-LATSCCNFLMDRAELDLLGWE 199 + + L T + A ++ G+ Sbjct: 470 KSNMEELLYTVELPLIEVLASMECEGFR 497 >gi|156379680|ref|XP_001631584.1| predicted protein [Nematostella vectensis] gi|156218627|gb|EDO39521.1| predicted protein [Nematostella vectensis] Length = 855 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 49/173 (28%), Gaps = 49/173 (28%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFH 80 I V E + L ++C + + + + G L +L + K+ Sbjct: 246 VIGVSCEGVNLSRY-GKICWLLIGTREFVYLFDVLKLGASCFDEGLQEILENGNILKVA- 303 Query: 81 YGRFDI-------------------AVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 DI A L+ + + + NQ L + Sbjct: 304 ----DIIIYKRERQGELPQLVNGLVACLYEYLNMPPENM-------SFQKYRVNQMQLDE 352 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + W+ L + L AA VV+L LRL E+L Sbjct: 353 AI----------------WTRRPLPERMLDAAAKRVVYLRELRLAQMERLMAE 389 >gi|242058237|ref|XP_002458264.1| hypothetical protein SORBIDRAFT_03g030190 [Sorghum bicolor] gi|241930239|gb|EES03384.1| hypothetical protein SORBIDRAFT_03g030190 [Sorghum bicolor] Length = 202 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 18/156 (11%) Query: 23 IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 + +D E ++ + +QL G + I ++ L L D Sbjct: 49 VGLDVEWRPSYRSYQNPVATLQLCVG-RSCLIFQLLHADYVPGALAEFLGDRGI------ 101 Query: 82 GRF------DIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISK 133 F D L G++V + A + R Q GL+ ++ ++G++++K Sbjct: 102 CFFGVGVAADAERLSDDHGLQVANAVDLRGRAAECMNRPDLRQAGLRALVQAVMGVDLAK 161 Query: 134 AQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 Q+ S W A LS EQ++YA D + + Sbjct: 162 PQRVTMSRWDAYCLSHEQIRYACVDAFVSFEIARRL 197 >gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] Length = 873 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 22/197 (11%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIF 79 + ++ DTET L ++ + + + I + + + EKI Sbjct: 321 NIVSFDTETTSLE--NPKIVGFSFAFEENKAYYVPINHFYLGVSKQIDEKIALKAIEKIL 378 Query: 80 ------HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130 H +FD +L P T I + + GL K L Sbjct: 379 EKKVIGHNLKFDFKMLKDYKIKTPTPFADTMILGWIIDPDSP-VGLDSLAKRYLNHQNIK 437 Query: 131 ----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 + K Q S+ + +YA+ D + L EK + D+ Sbjct: 438 YKEIVGKNQNFSEIDIK--TAA--KYASEDAIITLKLYEVLKEKTWEEVKWDIENIEMPL 493 Query: 187 LMDRAELDLLGWENVDI 203 + +++ G + VDI Sbjct: 494 INILIDMEKEGIK-VDI 509 >gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] Length = 936 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 62/181 (34%), Gaps = 25/181 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D +A+DTET L R ++ + LS G I + +AP L Sbjct: 356 LQQADLVALDTETDSLDEMRAQIVGISLSVQPGAAAYIPLQHSGPDAPAQLPIGQVLARL 415 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKE 125 L D +R K+ + ++D V G+ V+ V T + S + + H L + Sbjct: 416 KPWLEDGRRHKLGQHIKYDRHVFANH-GIEVQGYVHDTMLQSYVLEVHKP-HNLGSLAER 473 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGR 176 G K D A L Q+ Y+ D + +LQ R Sbjct: 474 HTGR---KGISYEDLCGKGAHQLPFAQVPVDKAAAYSCEDADLTLNVHQTLWPQLQAHDR 530 Query: 177 S 177 Sbjct: 531 L 531 >gi|118394980|ref|XP_001029847.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89284120|gb|EAR82184.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 1070 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 64/202 (31%), Gaps = 45/202 (22%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-----VDIIRIAAGQKNAPNL- 66 A + + VD E G + + + ++Q+S D + + +K Sbjct: 838 ALRILQQQSYLGVDLE--GSLSKHGHIELIQISYHDFIQNHSFIYVFDFVEMEKQQEVFI 895 Query: 67 ------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS------------- 107 ++ D+ KI + D L++ F ++ T++A Sbjct: 896 LAKKAIKQIMEDKSIIKILQGCQKDALALYHLFSTQIINGLDTQVAHNFIIQLKALSDLK 955 Query: 108 ------------------RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 ++ + Y +GL + I + Q + +++E Sbjct: 956 QNNKKKIKDLQYFNCGLNQILQIYNAPNGLNPLKAKFQSIFVDPVQSAHYMKQRPINEEF 1015 Query: 150 LQYAASDVVHLHALRLQFTEKL 171 L Y++ DV L + + L Sbjct: 1016 LIYSSKDVEDLIPVFFNILKSL 1037 >gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] Length = 900 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 29/186 (15%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK--REK- 77 +A DTET L + ++ + + I IA AP V + D K K Sbjct: 332 SIVAFDTETTSLDTKIAKIVGFSFCFNENSAYYIPIAHSYLGAPEQVSI-EDAKSAINKL 390 Query: 78 -----IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI- 131 I ++D ++ + F + + T I + L + +++ GL K + Sbjct: 391 NNFKLIVQNFKYDFDIIKFNFDIELNLFADTIILAWLLDS-SSKVGLDALAKNYFDHTMI 449 Query: 132 ------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185 K D+S D+S+ YAA D + + + + E+ ++ C Sbjct: 450 AFKDVVKKGD---DFSTVDISNA-CNYAAEDALMTYKIYFKLLEEFKKQN--------CE 497 Query: 186 FLMDRA 191 L+ A Sbjct: 498 HLLKIA 503 >gi|118394996|ref|XP_001029855.1| 3'-5' exonuclease family protein [Tetrahymena thermophila] gi|89284128|gb|EAR82192.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210] Length = 1146 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 66/210 (31%), Gaps = 62/210 (29%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPN----------LVG 68 + VD E + +VQ+S P + I I + Q + + Sbjct: 448 VGVDLEGALRKEGYVQ--LVQISIQLKPDFSQIFIFDIYSIQNIKEDKILEKNMINCIQN 505 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS--------------------- 107 ++ D KIFH R D L + VF T A+ Sbjct: 506 IMQDVNIIKIFHDCRRDSLALHLFMKACPKNVFDT--AAIHAFKLHVEKYIDFTKNKFKG 563 Query: 108 ----------RLTRTYTN--QHGLKDNLKEL---LGINISKA--QQ------SSDWSADD 144 +L ++ Q GL D L+ GIN+ K Q S + Sbjct: 564 LNTKEDKNILQLLKSLEELKQPGLNDILQIYNTSHGINLLKDSMHQKFQEMPSLYFLQRP 623 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + E L+Y+A DV L + +++ Sbjct: 624 IDPEFLEYSARDVEDLIEAYHFMIDTVKQT 653 >gi|194900214|ref|XP_001979652.1| GG16480 [Drosophila erecta] gi|308191615|sp|B3NZ68|WRNXO_DROER RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5' exonuclease gi|190651355|gb|EDV48610.1| GG16480 [Drosophila erecta] Length = 354 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 18/173 (10%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + I ++ +K LV ++ K Sbjct: 159 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNLKKLPAVLVALINHSKVR--L 215 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 216 HGVNIKNDFRKLARDFPEVSAEPLIEKCVDLGVWCNEVCETGGRWSLERLTNFIAKKAMD 275 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 K++ + S W L + QL YAA DV + +L+R ++ + Sbjct: 276 KSKKVRMSKWHVIPLDENQLMYAAIDVY----IGQVIYRELERREKAKIINEE 324 >gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] Length = 903 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 57/153 (37%), Gaps = 29/153 (18%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122 L +L DEK K H ++ + L + G V+ + F T IA+ L +KD Sbjct: 385 SGLAALLGDEKISKTAHNAKY-LMNLLLSAGQAVKGLDFDTMIAAHLLGE--KNLAIKDL 441 Query: 123 LKELLGINIS----------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKL 171 + E GI I+ K S LS+ QL A+D + L+ F +L Sbjct: 442 VFEHFGIEIADIENILTRNGKKASFS---EVQLSEAAQL---AAD--YTFRLKGIFAAQL 493 Query: 172 QRLGRSDL-ATSCCNFLMDRAELDLLGWENVDI 203 DL A L LLG E I Sbjct: 494 AETRLMDLFARVEMPLLPI-----LLGMERTGI 521 >gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Length = 605 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 18/142 (12%) Query: 49 GTVDIIRIAAGQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 G I +A +AP+ L +L DEK K+ ++D +L G+ +R Sbjct: 55 GVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELR 113 Query: 99 PV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------Q 151 + F T + S + + +H + + L ++ + + L+ Q+ + Sbjct: 114 GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGR 173 Query: 152 YAASDVVHLHALRLQFTEKLQR 173 YAA D L L+ LQ+ Sbjct: 174 YAAEDADVTLQLHLKMWPDLQK 195 >gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1] gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1] Length = 941 Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 20/168 (11%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKRE 76 D + DTET + L + + G I A + L + +EK Sbjct: 368 DQLCFDTETTSVNAMEAELVGISFAYLSGEAYYIPCPADRAETDQILEQLKPVFQNEKIL 427 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS---- 132 KI ++D+ +L ++ T +A L +H + ++ L Sbjct: 428 KIGQNIKYDLLILKNYDVEVKGKLYDTMLAHYLIEPEG-KHSMDWLAEQYLNYQPVSITE 486 Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173 K Q + D+ +Q+ +YA+ D L+ + L+ Sbjct: 487 LIGKKGKNQG----NMRDVDVDQVTEYASEDADITLQLKEKLDPFLKE 530 >gi|317139033|ref|XP_003189119.1| 3-5 exonuclease [Aspergillus oryzae RIB40] Length = 340 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 17/134 (12%) Query: 39 LCIVQLSPGDGTVD----IIRIAAGQKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYT 92 + ++QL+ + R A G ++ P L +L K + D L Sbjct: 142 VSLIQLASSRRIALFHIAMFRPARGAEDLVPPTLKRILESPDVIKAGVSIKADCTRLRKY 201 Query: 93 FGVRVRPVFCTKIASRLTRTYTNQHG--------LKDNLKELLGINISKA--QQSSDWSA 142 G+ R +F +L + + G L ++E GI ++K + SDW++ Sbjct: 202 LGIETRGIFELSHLYKLVKYSQSNPGLVNKRTVNLSAQVEEHFGIPLAKDVEVRCSDWAS 261 Query: 143 DDLSDEQLQYAASD 156 L Q+ YAA+D Sbjct: 262 A-LDYSQVHYAAAD 274 >gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] Length = 882 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 4 IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61 + ++ D A +A+ E R D + + ++ + + ++ + Sbjct: 317 VTTNQDDFDELLVNATRAGKVALYLE----GTRHDGISRIFVAVPEQDIYLLPLQDTDPY 372 Query: 62 -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119 L + + + +K FH + + + + G+ ++ + F T +A+ L + + L Sbjct: 373 PALTVLQALCENSEIKKYFHDAKSAL-WMLHHHGIELKSLAFDTMVAAYLLNPTASGYDL 431 Query: 120 KDNLKELLGINI 131 D E LGI + Sbjct: 432 IDLALEHLGIVL 443 >gi|242054351|ref|XP_002456321.1| hypothetical protein SORBIDRAFT_03g033960 [Sorghum bicolor] gi|241928296|gb|EES01441.1| hypothetical protein SORBIDRAFT_03g033960 [Sorghum bicolor] Length = 210 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 + ++Q+ D + +I L L D + + R D A L +G+ V Sbjct: 71 VAVLQICV-DRRCLVFQILRADYVPDALSDFLADRRFTFVGVGIRDDAAKLRDGYGLEVP 129 Query: 99 PVFCTK-IASRLTRTY-TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAA 154 + +A+R + GL+ + E+LG+ + K + S W LS Q +YA Sbjct: 130 RTVDLRRLAARTLGKPDLRRAGLQRLVWEVLGVQMEKPHHVRVSAWDKRKLSKAQFKYAC 189 Query: 155 SD 156 +D Sbjct: 190 AD 191 >gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153] Length = 930 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFSALLDKLSQADTIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIEQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDAK 520 >gi|296416175|ref|XP_002837756.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633639|emb|CAZ81947.1| unnamed protein product [Tuber melanosporum] Length = 253 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 43/206 (20%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAG------- 59 D+P + + +D E L + I+Q+ P + T + G Sbjct: 23 SDLPN-----HPPPLYLDLEGERLGRH-GTIAIIQIHVLPQNHTYLLDITTLGREAFTFR 76 Query: 60 -QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASRLTRTYTN 115 A NL +L K R D LF + + +R V ++ A+R R Sbjct: 77 ENLQAKNLKTILESPSITKCLFDVRNDADALFNLYDISLRGVQDIQVMNYAAREVRNGVR 136 Query: 116 Q-----HGLKDNLKELLGI--------NISKAQ-----------QSSDWSADDLSDEQLQ 151 GL ++ G+ K + + ++ L + L+ Sbjct: 137 GRGPRVMGLAKSIAADCGLNRAALAEFERKKEEGGMIFNPQFGGSYAVFAERPLRQDVLE 196 Query: 152 YAASDVVHLHALRLQFTEKLQRLGRS 177 Y DVVHL L ++ + L G Sbjct: 197 YCVGDVVHLPTLWRKYHDILGGRGWL 222 >gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381] gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 31/208 (14%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 V IA DTET + ++ + + + +A AP+ ++D+ Sbjct: 308 DLENVKEIAFDTETTSVDSHNAKIVGFSFCWDEKSSFYVPLAHSYLGAPD----MLDKNI 363 Query: 76 EK-----------IFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNL 123 K I ++D ++ FG+ + T I + L N G+ + Sbjct: 364 AKRLIEAIYTKFIIGQNLKYDFRIVRNNFGLNPPAKYADTMILAWLMDP-DNSVGMDNLA 422 Query: 124 KELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 K + + K + S S D + YA+ D +F L Sbjct: 423 KRYFDYDTIKFENVVKKGENFS--SVDVKNAA--NYASEDAWITLKFYKKFCGILSTE-L 477 Query: 177 SDLATS-CCNFLMDRAELDLLGWENVDI 203 DLA + F+ ++ G + +DI Sbjct: 478 LDLAKNLEFPFIKVLLNMEENGIK-MDI 504 >gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT] gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT] Length = 910 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 13/127 (10%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP---------- 64 + +A+DTET L P + +L + S G + +A AP Sbjct: 327 LLLKSAPLVALDTETTSLDPMQAKLVGMSFSVEAGKAAYVPLAHDYTGAPQQLDFTAALR 386 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNL 123 L ML D K+ ++D VL G+ + + T + S + ++ HG+ D Sbjct: 387 QLRPMLEDASIPKLGQNLKYDKHVLANH-GIALNGITHDTLLQSYVLESHRT-HGMDDLA 444 Query: 124 KELLGIN 130 LG+ Sbjct: 445 MRHLGVQ 451 >gi|290991532|ref|XP_002678389.1| predicted protein [Naegleria gruberi] gi|284092001|gb|EFC45645.1| predicted protein [Naegleria gruberi] Length = 839 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%) Query: 20 VDAIAVDTETL-GLMPRRDRLCIVQLS------PGDGTVDIIRIAAG----QKNAPNLVG 68 I +D E L+ + LCI+Q+S P + II + N NL Sbjct: 65 TPCIGLDCEGSPDLVKQSGTLCIIQISLINKLHPEILDIYIIDVFKIGGQELSNKTNLRK 124 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIA 106 +L + K+ H GR D VLFY G ++ F T+IA Sbjct: 125 LLESKTVLKVIHDGRRDSDVLFYQMNGTKLNFTFDTQIA 163 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 10/67 (14%) Query: 118 GLKDNLKELLGINIS--KAQQS------SDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 GL L + I+ S K Q + W LS +QL+ AA DV +L L T+ Sbjct: 531 GLVRLLHDFCMIDYSSKKTIQEQVISEETYWKTRPLSSDQLEGAALDVKYLLFLYE--TQ 588 Query: 170 KLQRLGR 176 +L + + Sbjct: 589 RLHLMNK 595 >gi|226533262|ref|NP_001141102.1| hypothetical protein LOC100273185 [Zea mays] gi|194702630|gb|ACF85399.1| unknown [Zea mays] Length = 202 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 6/150 (4%) Query: 23 IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 + +D E P ++ + +QL G + I ++ L L D + Sbjct: 49 VGLDVEWRPSFGPHQNPVATLQLCVG-HSCLIFQLLYADYVPGALAEFLGDRGIRFVGVG 107 Query: 82 GRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--S 137 D L G+ V + A R+ R Q GL+ ++ ++G+N+ K Q+ Sbjct: 108 VEADAERLSDDHGLVVANAEDLRGRAAERMNRPDLRQAGLRALVQVVMGVNLVKPQRVTM 167 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQF 167 S W A LS EQ++YA D + + Sbjct: 168 SRWDASCLSYEQIKYACIDAFVSFEVARRL 197 >gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium] Length = 898 Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 13/181 (7%) Query: 30 LGLMPRRDRLCIVQLSPGDGTVDIIR--IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA 87 RL + L GD I A L + +E KI H + I Sbjct: 338 DREDSYSSRLSGLALCTGDEVFYIETGTALPENLIATELKELWQNENIHKIGHNIKEFIT 397 Query: 88 VLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS-------KAQQSSD 139 L V + + F T IA L + N + + + L ++ K + + Sbjct: 398 WLLKH-DVELNGLYFDTMIAEYLIDSIRNGYPIASLSHKYLNRSVPSLDELLGKGKGAKK 456 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGW 198 +S + Y+A +V + + + LQ + +L + A ++ G+ Sbjct: 457 YSEIP-PERLKDYSAYNVKAIFDIWPMQKKVLQENRQEELFNDIELPLITVLASMEYHGF 515 Query: 199 E 199 + Sbjct: 516 K 516 >gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] Length = 891 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 73/215 (33%), Gaps = 35/215 (16%) Query: 9 GDIPAECAA-RYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRI-------- 56 ++ A AA R + I+VDTET L P + C + G + + Sbjct: 303 AELDAMVAALRQAEVISVDTETTSLNPLLAEVVGFC---FAVEPGHGWYVPVGHCGGGAE 359 Query: 57 --AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 + + +L D K+ ++D VL G+ +R V T + S L Sbjct: 360 EQLPRDEVVAQVQPLLEDATLAKVGQNLKYDALVLRRA-GIALRGVVADTMLQSYLLYPA 418 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHA 162 HGL + LG K S+ + +Q+ +YAA D Sbjct: 419 ARSHGLDALAADHLGY---KMISYSEVAGT--GKKQIGFDEVALDVATRYAAEDADITLQ 473 Query: 163 LRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 L +F +L R T L +++ G Sbjct: 474 LYQRFDAELDGTLRELFETVEMPLLQVLIDMEWWG 508 >gi|303277603|ref|XP_003058095.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460752|gb|EEH58046.1| predicted protein [Micromonas pusilla CCMP1545] Length = 891 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 118 GLKDNLKELLGI---------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 GL++ +++ + + K +Q S+W L Q+ YAA D L L Sbjct: 833 GLRELVRDSARLRAGGGGEATTLDKREQRSNWDRRPLRGSQIAYAALDAEVLLRL 887 >gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419] gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419] Length = 1004 Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 13/142 (9%) Query: 46 PGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 GD G I ++ L +L D K+ ++ V+ GV ++ T Sbjct: 456 TGDLLGGGHIDNQIPAREALSRLKELLEDPSILKVAQNLKYGYLVMKRH-GVTMQGFDDT 514 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGIN--ISKAQQSSDWSADDLS------DEQLQYAAS 155 + S + HG++ + LG SK S L+ D+ Y+A Sbjct: 515 MLISYVLDAGNGAHGMESLAERWLGHTPIASKGITGS--GRSSLTIDFVDIDKAAAYSAE 572 Query: 156 DVVHLHALRLQFTEKLQRLGRS 177 D L +L G + Sbjct: 573 DADIALRLWHVLKPRLTARGLT 594 >gi|118790166|ref|XP_318059.3| AGAP004757-PA [Anopheles gambiae str. PEST] gi|116122387|gb|EAA13165.3| AGAP004757-PA [Anopheles gambiae str. PEST] Length = 342 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 9/137 (6%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++ ++ D ++ I I K + +L +++ ++ H GR VL + FGV + Sbjct: 147 LLSIATHD-SIYIFDI-KWMKITDEMRDLLSNDRYRRVLHNGRLVKDVLQHKFGVELGKC 204 Query: 101 FCTKIAS-RLTRTYT----NQHGLKDNLKELLGINISKAQQ-SSDWSADDLSDEQLQYAA 154 F +A + +T L+ ++ L + K ++++ +SD + AA Sbjct: 205 FDVMVAHIAIGKTEGKIVEEGVSLQACVQSYLKLP-DKFFDMNANFDERPVSDTMKREAA 263 Query: 155 SDVVHLHALRLQFTEKL 171 VV L L+ F ++ Sbjct: 264 KHVVFLLPLQDLFIHEI 280 >gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424] gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424] Length = 966 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 60/179 (33%), Gaps = 33/179 (18%) Query: 19 YVDAIAVDTETLGLMPRRDRL----CIVQLSPGDG--TVDIIRI-------AAGQKNAPN 65 +A DTET L P+ L C G+ V I + ++ Sbjct: 374 PAQPVAWDTETTSLEPKDTTLVGIGC----CWGEQPTEVAYIPLNHTEGEQLPQEEVLSA 429 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L E K+F +FD VL VF T +AS + R H L D + Sbjct: 430 LSVILESENYPKVFQNTKFDRIVLLNKGIKLAGVVFDTMLASYVLRPEL-SHKLSDLCER 488 Query: 126 LL---------GINISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL 174 L + I K Q LS E++ Y D L + +L++ Sbjct: 489 YLENIKALNYRDLEIPKTQT-----IAHLSLEKVAHYCGMDAYATFMLVPKLIAELKQA 542 >gi|189236369|ref|XP_001811750.1| PREDICTED: similar to exonuclease 3-5 domain-like 1 [Tribolium castaneum] gi|270005886|gb|EFA02334.1| hypothetical protein TcasGA2_TC008002 [Tribolium castaneum] Length = 313 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 36/132 (27%) Query: 66 LVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRPVFCTK-IASRLT---------RTY 113 L +L K+ H G FD L++ +GV ++ +F T+ + S L+ R Sbjct: 169 LREVLESGYICKVVHDGGALFD--CLYHKYGVEMKNIFDTQAVDSMLSKENDDVEIKRNI 226 Query: 114 TNQHGL-----KDNLKELLGINISKAQQSSDWSADDLSD------EQLQYAASDVVHLHA 162 + L +L K W L+ QL V +L + Sbjct: 227 SECLTYHFNFPAALLSAVLETMNDKT-----WFIRPLTKSDKIKSAQL------VAYLLS 275 Query: 163 LRLQFTEKLQRL 174 LR Q +++ + Sbjct: 276 LRDQLMKQILKK 287 >gi|157167399|ref|XP_001653906.1| hypothetical protein AaeL_AAEL009650 [Aedes aegypti] gi|108874230|gb|EAT38455.1| conserved hypothetical protein [Aedes aegypti] Length = 280 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 26/153 (16%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 IA D E R ++QL + +++ +K ++ +L + + Sbjct: 130 PIAFDLEWPF-SFQTGPGRTALMQLCVETNVCYLFQLSCLKKLPAAVLQLLTHPRVQ--L 186 Query: 80 H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHG------LKDNLKEL 126 H + D L F + + L Y HG ++ + ++ Sbjct: 187 HGINVKNDFRKLARDFPEANADLLIERCVD------LGGWYNRIHGSCGVWSMERLVLQV 240 Query: 127 LGINISK--AQQSSDWSADDLSDEQLQYAASDV 157 + K + S W LSD+Q YAA DV Sbjct: 241 CRQRVDKNKKVRMSKWHVLPLSDDQKLYAAVDV 273 >gi|282879021|ref|ZP_06287783.1| 3'-5' exonuclease [Prevotella buccalis ATCC 35310] gi|281298856|gb|EFA91263.1| 3'-5' exonuclease [Prevotella buccalis ATCC 35310] Length = 222 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 19/163 (11%) Query: 21 DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 D + VDTE ++ ++Q++ + G P + +L + + + Sbjct: 46 DILGVDTETRPVFRKGQSY--QVSLLQVATKEVCFLFRLNMLGIT--PAIKLLLENTQTK 101 Query: 77 KI---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINIS 132 I +H D+ +L + + I L L+ + IS Sbjct: 102 MIGLSWHD---DLLMLHRRSEFKKGYFIDLQDIVGEL---GIKDLSLQKLYANIFHQKIS 155 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 K Q+ ++W + L+D+Q YAA+D L + +L+ G Sbjct: 156 KRQRLTNWDQESLTDKQKLYAATDAWACIMLHEEIL-RLKETG 197 >gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L] gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L] Length = 996 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 59/174 (33%), Gaps = 31/174 (17%) Query: 21 DAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNL---------V 67 + +A DTET L PR +L C G D+ I G K+ NL Sbjct: 407 NPVAWDTETSDLEPRDAQLVGIGC----CWGKEFTDVAYIPIGHKDGTNLDKDIVLESLR 462 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L K+ +FD VL VF T +AS + T H L D L Sbjct: 463 PILESSDYPKVLQNSKFDRLVLRCNGIQLAGVVFDTMLASYVLNPET-SHKLSDLGLHYL 521 Query: 128 GIN-------ISKAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQR 173 GI + K + DL Y D + + E+L++ Sbjct: 522 GIEAQSYNDLVPKGKT-----IRDLDIPTVADYCGMDAYTTFGIVFKLREELEQ 570 >gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601] gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601] Length = 921 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 22/194 (11%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I + + A R A+DTET L R + + S G I +A Sbjct: 326 DIILTWAQLDDWLARVRAAPLAAIDTETTSLDELRAEIVGISFSVEPGAAAYIPLAHDGP 385 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110 + P L L D K K+ + ++D V G+ VR V T + S + Sbjct: 386 DTPAQLPLAEVLARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGYVHDTMLQSYVL 444 Query: 111 RTYTNQHGLKDNLKELLGIN-IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + HGL + G IS K + +S + Y+ D + Sbjct: 445 EVHKP-HGLASLAERHTGRTGISYEDLCGKGAKQIPFSQVPVDKA-AAYSCEDSDQTLDV 502 Query: 164 RLQFTEKLQRLGRS 177 +L+ + Sbjct: 503 HRVLWPQLEADEKL 516 >gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 939 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 72/222 (32%), Gaps = 40/222 (18%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A + I +DTET L L + ++ G I + AP Sbjct: 337 TTEAQFAALLDKLSQAEKIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 396 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 397 EQLDLQYVLDRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIVGDAMLASYIIESH 455 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + LG+ +K +D + ++ YAA D L Sbjct: 456 L-GHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATE----YAAQDADFALRL 510 Query: 164 RLQF-----TEKLQRLGRSDL----ATSCCNFL---MDRAEL 193 ++L+ + +L + +DRAEL Sbjct: 511 EAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAEL 552 >gi|73963365|ref|XP_867009.1| PREDICTED: similar to Protein C14orf114 isoform 2 [Canis familiaris] Length = 522 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 22/122 (18%) Query: 44 LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G ++R+ G+ L+ +L D K+ D + L +G+ V+ Sbjct: 1 MASPSGFCVLVRLPKLICGGKTLPKTLLDILADGTILKVGVGCSEDASKLLQDYGLVVKG 60 Query: 100 VFCTKIASRLTRTYT---------NQHGLKDNLKELLGINISKA--QQSSDWSADDLSDE 148 R N LK + +L + K+ + S+W A++L+++ Sbjct: 61 CLD-------LRYLAVRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAENLTED 113 Query: 149 QL 150 Q+ Sbjct: 114 QV 115 >gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae] Length = 920 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 12/186 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----AGQKNAPNLV-GMLVDEKREK 77 + +D ET GL +D + + + + ++ G+ NLV L E + Sbjct: 352 VCIDFETTGLDTFKDTIIGISFAIKSNEAFYLDLSGRTKIGKDKCMNLVFDTLEKEDIKV 411 Query: 78 IFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H +++ ++ G + + F T +A+ L ++ + D L N K Sbjct: 412 IGHNLKYEYKMM-KAIGKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSD 470 Query: 137 SSDWSADDLSDEQL----QYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRA 191 +D + L D L +YA D F L+ +L + A Sbjct: 471 LTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLEELFFNIEMPLVSVLA 530 Query: 192 ELDLLG 197 +++ G Sbjct: 531 DMEFDG 536 >gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] Length = 984 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 19/181 (10%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------- 57 + A + I +DTET L P + +L + ++ G G I +A Sbjct: 393 TTREQLAALTERLAHSSVIGLDTETTSLEPMKAQLVGISIAFGAGDAAYIPVAHTFAEQL 452 Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116 +L L + + KI ++D V G+ ++ + +AS + ++ Sbjct: 453 DWTDIKSSLQPFLENPQLGKIGQNMKYDQHVFANH-GIALQGISGDAMLASYIVESHL-G 510 Query: 117 HGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 HGL + + L + K + ++ L +YA D + Sbjct: 511 HGLDELSERWLQLPTITYESLCGKGAKQIPFADVPLDKA-AEYACQDADFALRIEQHLRT 569 Query: 170 K 170 + Sbjct: 570 Q 570 >gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC] gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC] Length = 921 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 22/194 (11%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 I + + A R A+DTET L R + + S G I +A Sbjct: 326 DIILTWAQLDDWLARVRAAPLAAIDTETTSLDELRAEIVGISFSVEPGAAAYIPLAHDGP 385 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110 + P L L D K K+ + ++D V G+ VR V T + S + Sbjct: 386 DTPAQLPLAEVLARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGYVHDTMLQSYVL 444 Query: 111 RTYTNQHGLKDNLKELLGIN-IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + HGL + G IS K + +S + Y+ D + Sbjct: 445 EVHKP-HGLASLAERHTGRTGISYEDLCGKGAKQIPFSQVPVDKA-AAYSCEDSDQTLDV 502 Query: 164 RLQFTEKLQRLGRS 177 +L+ + Sbjct: 503 HRVLWPQLEADEKL 516 >gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno] gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno] Length = 928 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 19/167 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----MLVDEKREKI 78 + DTET + L + + ++ A L+ +E+ K+ Sbjct: 358 VCFDTETTNVDALEAELVGISFCWAAHKGHYLPFPKEKEAATKLIEQFRPFFENEQIAKV 417 Query: 79 FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130 ++D+ VL GV V+ +F T IA L +H + + L Sbjct: 418 GQNLKYDLKVLQNY-GVEVQGALFDTMIAHYLLNP-DMRHNMDILSETYLNYTPIAIESL 475 Query: 131 ISKA-QQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLG 175 I K Q S + DE +YA D L+ F ++ ++ Sbjct: 476 IGKGKAQRS---MRTVPIDEVKEYAVEDADVTWQLKNVFQSQMPQVN 519 >gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath] gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath] Length = 906 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L R + + + G + +A AP L Sbjct: 324 LEAAELFAFDTETSSLDYMRAEVIGLSFAVEPGAAAYVPLAHDYPGAPPQLDRAMVLERL 383 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + K+ + ++D VL G+ +R + T + S + + +H + + Sbjct: 384 RPLLEDPGKAKLGQHLKYDANVLLNH-GIMLRGIRHDTMLESYVLNSTATRHDMDSLAER 442 Query: 126 LLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L K + ++ + D +YAA D L +L+ Sbjct: 443 YLDRKTLHYEDVAGKGAKQIPFARVSVEDA-CRYAAEDADVTLCLHRALWPRLE 495 >gi|299533476|ref|ZP_07046856.1| 3'-5' exonuclease [Comamonas testosteroni S44] gi|298718533|gb|EFI59510.1| 3'-5' exonuclease [Comamonas testosteroni S44] Length = 211 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 7/130 (5%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 +VQL+ V ++++ +L E K+ D L G + + Sbjct: 66 LVQLATAS-QVWLLQLHRPMA-LEVSRMVLAAEHICKVGFGLDNDKHSLPRRLGAPLINI 123 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAASDV 157 + SR R Y G++ +L + SK +S+W+A +LS Q +YAA+D Sbjct: 124 QD--LDSRFKRLGYGPSVGVRAAAALVLQQSFRKSKRTTTSNWAATELSPAQRRYAANDA 181 Query: 158 VHLHALRLQF 167 + + Sbjct: 182 HAPVVIYARL 191 >gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256] gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256] Length = 952 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 357 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 416 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 417 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 475 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + + ++ YAA D L Sbjct: 476 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIEQATE----YAAQDADFALRL 530 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 531 EAHLRAQMDAK 541 >gi|226509292|ref|NP_001146735.1| hypothetical protein LOC100280337 [Zea mays] gi|195625788|gb|ACG34724.1| 3-5 exonuclease family protein [Zea mays] gi|219888535|gb|ACL54642.1| unknown [Zea mays] Length = 217 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 20/134 (14%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI-------AVLFYTF 93 ++QL G + +I A L L + H RF L Sbjct: 66 VLQLCVG-HRCLVFQIVAADYVPAALKAFLASPQ-----H--RFVGVVVDVDVERLRCDC 117 Query: 94 GVRVRPVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQ 149 + V + A+ L R + GLK +E++G+ I K S+W LS Q Sbjct: 118 NIVVNNTVDLRYAAADVLGRPHLRTAGLKILAREVMGVEIEKPKHLTCSEWD-RPLSQAQ 176 Query: 150 LQYAASDVVHLHAL 163 ++YAA D + + Sbjct: 177 VRYAAIDAFVSYEV 190 >gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] Length = 975 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 381 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 440 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 441 EQLDLQDVLGHLKPYLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 499 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 500 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 554 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 555 EAHLRAQMDEK 565 >gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180] gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180] Length = 911 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 68/202 (33%), Gaps = 25/202 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + D A DTET L + L V + G + +A AP+ L Sbjct: 329 LQTADLFAFDTETTALDAMQAELVGVSFALEPGRAAYVPLAHVYPGAPDQLDRDRVLARL 388 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D R K+ ++D++VL + +R + T + S + + T +H L K Sbjct: 389 KPLLEDPGRPKVGQNLKYDMSVLARY-DIALRGIAHDTLLESYVLDS-TARHDLDSLAKR 446 Query: 126 LLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLG 175 L + K + + L YAA D L F +L L Sbjct: 447 FLDHDTIRFEDVAGKGAKQIGFDQVPLEQA-GPYAAEDAEVTLRLHRVFQPRLAAVPALE 505 Query: 176 RSDLATSCCNFLMDRAELDLLG 197 R + + L+ G Sbjct: 506 RL-YREIEMPLVPVLSRLERAG 526 >gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116] gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116] gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1] gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni 327] Length = 879 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 22/197 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75 IA DTET GL + ++ + + + + + +K Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQSAKKAI 372 Query: 76 EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E IF H ++D ++ FG+ + T I + L + + + + D L Sbjct: 373 EVIFNHFVIGHNLKYDFKIIQNNFGLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431 Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + K + ++++ +L +YAA D L F + L+ +LA Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLE-TPLLELAK 486 Query: 182 SC-CNFLMDRAELDLLG 197 +C +F+ ++ G Sbjct: 487 NCEFDFIKIIMMMEENG 503 >gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568] Length = 937 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 335 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 394 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 395 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 453 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + + ++ YAA D L Sbjct: 454 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIEQATE----YAAQDADFALRL 508 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 509 EAHLRAQMDAK 519 >gi|323454533|gb|EGB10403.1| hypothetical protein AURANDRAFT_62671 [Aureococcus anophagefferens] Length = 3786 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 18/149 (12%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKRE 76 R V +AVD E P + + ++Q+ G D++ + + + P L +L +E E Sbjct: 2922 RDVRRVAVDME-WRAQPLSN-IRVIQI----GVKDVVYLWRVKDSVPAGLAAILRNEGIE 2975 Query: 77 KIFHYGRFDIAVLFYTF-GVRVRP----VFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 KI + DI L + GV V+ + +A+ ++ + L D + ELL + Sbjct: 2976 KIGVNFQGDITRLTKQYEGVEVKGEIIELSD--LANDTLKSQKRRWSLADLVMELLNRTL 3033 Query: 132 SKAQ----QSSDWSADDLSDEQLQYAASD 156 K + W L + QYAA+D Sbjct: 3034 DKELGGGGRYGRWDEWPLDQDAQQYAAND 3062 >gi|264677843|ref|YP_003277749.1| 3'-5' exonuclease [Comamonas testosteroni CNB-2] gi|262208355|gb|ACY32453.1| 3'-5' exonuclease [Comamonas testosteroni CNB-2] Length = 214 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 7/130 (5%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 +VQL+ V ++++ +L E K+ D L G + + Sbjct: 69 LVQLATAS-QVWLLQLHRPMA-LEVSRMVLAAEHICKVGFGLDNDKHSLPRRLGAPLINI 126 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAASDV 157 + SR R Y G++ +L + SK +S+W+A +LS Q +YAA+D Sbjct: 127 QD--LDSRFKRLGYGPSVGVRAAAALVLQQSFRKSKRTTTSNWAATELSPAQRRYAANDA 184 Query: 158 VHLHALRLQF 167 + + Sbjct: 185 HAPVVIYARL 194 >gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse] gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse] Length = 968 Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 60/190 (31%), Gaps = 27/190 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---------------- 60 A+ A DTET L P + +L L+ G + + + Sbjct: 375 AKEQGFFAFDTETTSLDPLQAKLVGFSLALQPGKAAYVPLEHFEGGGDLLGGGRIVGQIE 434 Query: 61 --KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 K L +L D+ KI ++D V+ G+ +R T + S H Sbjct: 435 TRKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIRCFDDTMLLSYALDAGALTHN 493 Query: 119 LKDNLKELLGINIS--KAQQS-----SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + LG K + ++ DL L YAA D L +L Sbjct: 494 MDALSERWLGHKPIAYKDLTHNGKKITSFAQVDLKQATL-YAAEDADITLRLWQVLKPQL 552 Query: 172 QRLGRSDLAT 181 G + + Sbjct: 553 VARGMTKVYE 562 >gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145] gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145] Length = 931 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 17/177 (9%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEK 74 +++DTET GL L + + I + + L +L +E Sbjct: 356 QQKEVSMDTETTGLDANDAELVGLSFAYKAREAYYIAVPKHEKGILEFLEVLRPLLENEN 415 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130 KI ++D ++ +G+ ++ F T +A L T +H + + LG Sbjct: 416 IRKIGQNLKYD-YIILKWYGIELKGEFFDTMLAHYLLDPDT-RHNMDVLSENYLGYTPIS 473 Query: 131 ----ISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 I K + + D+ ++ YAA D L+ F L LA Sbjct: 474 ITELIGKGKNQLN--MRDIDVAKVTDYAAEDADVTLQLQQVFEPMLIEAQAEKLAKE 528 >gi|159486093|ref|XP_001701078.1| hypothetical protein CHLREDRAFT_153314 [Chlamydomonas reinhardtii] gi|158271972|gb|EDO97780.1| predicted protein [Chlamydomonas reinhardtii] Length = 1156 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 44/177 (24%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------------------- 57 + DTE + D+L +VQL G V ++++ Sbjct: 221 KVLGFDTEFVR-----DQLAVVQLCAGPH-VLLVQVPSCRQPASEQQQQQTKEKAQGGKE 274 Query: 58 -----AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA----SR 108 A P L +L + K D +++ FGV++R +A Sbjct: 275 QPPWRAPFTLLPELKALLCNPCIPKAAAEAWQDALMVYMGFGVKLRGGLDLTVAVPPDHV 334 Query: 109 LTRTYTNQHGLKDNLKELL----GINISKAQQSSDWSADDLSDEQLQYAASD--VVH 159 + ++ GL D + + K + W + L D+Q +YAA D V + Sbjct: 335 DLKRGRDKLGLFDIFRTFFAAADHVQKDKTINHTKWLSSRLDDKQKRYAALDAFVSY 391 >gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 478 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 15/134 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DEK K+ ++D VL G+ +R + F T + S + + +H + Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464 Query: 126 LLGINISKAQQSSD 139 L K D Sbjct: 465 WLKH---KTITFED 475 >gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50] gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50] Length = 904 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 11/119 (9%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 +A+DTET L + RL + ++ G I +A A + L G Sbjct: 328 APLVALDTETTSLDEMQARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEVIARLRGW 387 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D R K+ H+ ++D V T + + + ++ GL D + LG Sbjct: 388 LEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESH-RGVGLNDLAQRFLG 445 >gi|115625013|ref|XP_001204139.1| PREDICTED: similar to conserved hypothetical protein, partial [Strongylocentrotus purpuratus] gi|115634330|ref|XP_001186051.1| PREDICTED: similar to conserved hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 94 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 23/88 (26%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNA---PNLVGMLVDEKREKI----------------- 78 L +VQ+S DG + + + +L +L +K+ Sbjct: 6 LTLVQISTWDGKAFLFDVFKNPQLLKGNSSLKQILERNSIKKVCRHPTSNLILSLYKNPD 65 Query: 79 ---FHYGRFDIAVLFYTFGVRVRPVFCT 103 H + D L FGV ++ VF T Sbjct: 66 LPVIHDCKCDTHALHNEFGVILKNVFDT 93 >gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822] gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis] Length = 904 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 11/119 (9%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 +A+DTET L + RL + ++ G I +A A + L G Sbjct: 328 APLVALDTETTSLDEMQARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEVIARLRGW 387 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D R K+ H+ ++D V T + + + ++ GL D + LG Sbjct: 388 LEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESH-RGVGLNDLAQRFLG 445 >gi|169622866|ref|XP_001804841.1| hypothetical protein SNOG_14657 [Phaeosphaeria nodorum SN15] gi|111056729|gb|EAT77849.1| hypothetical protein SNOG_14657 [Phaeosphaeria nodorum SN15] Length = 279 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 24/166 (14%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 R+ ++ + T+ + L +L D + K+F R D L+ +GV Sbjct: 62 ARIFLIDM----HTLGALAFTTPSSQGKTLKHVLEDSQITKVFFDVRNDSDALYAHYGVA 117 Query: 97 VRPVFCTKIASRLTRT----YTNQHGLKDNLKELL------------GINISKAQ---QS 137 ++ V ++ R GL +++ G + K + Sbjct: 118 LQCVEDVQLMESAAREKTALRRTVIGLARCVEKNCSATSTWQAAKSRGEKLFKPELGGSY 177 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 ++ + + + Y A DV L LR F + + R DL Sbjct: 178 EVFNQRPIPADIVAYCAGDVGCLVQLREVFCQGKGQEWR-DLVRDE 222 >gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS] Length = 904 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 11/119 (9%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 +A+DTET L + RL + ++ G I +A A + L G Sbjct: 328 APLVALDTETTSLDEMQARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEVIARLRGW 387 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D R K+ H+ ++D V T + + + ++ GL D + LG Sbjct: 388 LEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESH-RGVGLNDLAQRFLG 445 >gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Fulvimarina pelagi HTCC2506] gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Fulvimarina pelagi HTCC2506] Length = 466 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 63/196 (32%), Gaps = 51/196 (26%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----------GDGTVDIIRIAAGQKNA 63 +C R + DTET GL+P RD + VQ+ G+ ++ A Sbjct: 266 DCPLRDLVYCVFDTETTGLIPHRDEI--VQIGAIRIVDGKLVEGETFDTLVDPGGPIPRA 323 Query: 64 PNLVGMLVDEKR--------------------EKIFHYGRFDIAVLFYT---FGVRV-RP 99 + + + D+ + H FD++ L GV P Sbjct: 324 SSKIHGITDKMVMGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAFDHP 383 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 + T + S + T +H L D + E LGI I K + + A D Sbjct: 384 IVDTVLVSAIIFGTTERHML-DVVCERLGIRIEKKDRHT--------------ALGDARV 428 Query: 160 LHALRLQFTEKLQRLG 175 + L+ G Sbjct: 429 TAEAMKRMLPLLEARG 444 >gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of Bemisia tabaci] Length = 939 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 5/111 (4%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKIF 79 A D T G+ P L + + GT I + Q L + K+ Sbjct: 366 AFDIATTGMDPHLADLLGIAFAYQPGTAYYIALPPNKAAAQPFLALLQPLFQRTDVLKVG 425 Query: 80 HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 H + + V+ P+F T IA L + H L ++ L Sbjct: 426 HNLKNALIVMQRHGLSIAPPLFDTMIAHGLVAADMDHH-LTTLSEQYLNHR 475 >gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1] gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1] Length = 968 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 27/190 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------A 58 A+ A DTET L P + +L L+ + + Sbjct: 375 AQEQGFFAFDTETTSLDPIQAKLVGFSLALQPEKAAYVPLEHVEGENDLLKGGRIVSQIE 434 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 QK L +L D+ KI ++D V+ G+ + T + S T H Sbjct: 435 TQKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIHCFDDTMLLSYALEAGTLTHN 493 Query: 119 LKDNLKELLGINIS--KAQQS-----SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + + LG K + ++ DL L YAA D L +L Sbjct: 494 MNALSERWLGHKPIAYKDLTHNGKKITSFAEVDLKQATL-YAAEDADITLRLWQVLKPQL 552 Query: 172 QRLGRSDLAT 181 G + + Sbjct: 553 VAQGMTRIYE 562 >gi|160900262|ref|YP_001565844.1| 3'-5' exonuclease [Delftia acidovorans SPH-1] gi|160365846|gb|ABX37459.1| 3'-5' exonuclease [Delftia acidovorans SPH-1] Length = 294 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 20/149 (13%) Query: 21 DAIAVDTETLGLMP-RRDRLC--IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + DTE+ L + +VQL+ D ++++ Q A +L E K Sbjct: 46 PVLGFDTESKPLFHAHQTDTGPHVVQLATCD-QAWLLQLHHAQARALA-ADVLASESICK 103 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI------ 131 D + L GV + V +HG ++ + + Sbjct: 104 AGFGLDHDRSALPGRLGVALHNVID-------LDRVFKRHGYASSVGVRAAVALVLGQNF 156 Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVV 158 SK +S+W+A LS Q YAA+D Sbjct: 157 HKSKKISTSNWAAPQLSLAQRHYAANDAH 185 >gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802] gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802] Length = 972 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 20/120 (16%) Query: 22 AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLVG 68 +A DTET L PR L C G+ + DI I G L Sbjct: 383 PVAWDTETTSLEPRNAELVGIGC----CWGEKSTDIAYIPTGHNKGNQLKKEAVLQALKP 438 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L ++ K+F +FD + ++ G+ ++ VF T +AS + H L D L Sbjct: 439 ILESDRYPKVFQNTKFDRLIFYHQ-GINLKGVVFDTLLASYVLHPEM-SHNLSDLCYRYL 496 >gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy] gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy] Length = 948 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 32/205 (15%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-----SPGDGTVDIIRIAAGQKNA----- 63 E A + +A D ET GL + Q+ +G + + K Sbjct: 372 EQAIKAGGVMAFDLETTGLDEM-----LAQVIGFSFCWEEGKSYYVPLVHETKELVDREQ 426 Query: 64 --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120 L L + + ++D VL +G+ + + F T +A+ L + T+ + Sbjct: 427 VRSLLEEYLGSGRLSLVGQNIKYDYKVL-RQWGIMPKNIYFDTMVAAWLLDS-TSVFNMD 484 Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 ++ L + K + SD L + Y A D L F+E L Sbjct: 485 YLAEKYLDYKTVHYTDIVPKDKLLSD---IPLEQA-VFYGAEDADVTFRLYKLFSELLGA 540 Query: 174 LGRSDLATS-CCNFLMDRAELDLLG 197 L L+ A ++L G Sbjct: 541 RNLRSLLDEVEMPLLVIIANMELAG 565 >gi|299755113|ref|XP_001828437.2| hypothetical protein CC1G_04408 [Coprinopsis cinerea okayama7#130] gi|298411075|gb|EAU93429.2| hypothetical protein CC1G_04408 [Coprinopsis cinerea okayama7#130] Length = 622 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 9/140 (6%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 R+ +VQL+ D + +I+++A L +L D K + D F + V Sbjct: 168 RVALVQLAN-DEMILLIQVSAMHALPYKLTEILEDPSYIKAGVGIQGDALKFFNDWMANV 226 Query: 98 RPVFCTKIASRLT------RTYTNQHGLKDNLKELLGINISKAQ-QSSDWSADDLSDEQL 150 R V + +R Y + GL ++ + K + + ++W L+ E+ Sbjct: 227 RSVVDLSLLARSVDNARWKGKYNHPIGLARLVEVYHYRLLEKGKIRRTNWEK-ILNLEEQ 285 Query: 151 QYAASDVVHLHALRLQFTEK 170 YAA+D + L Sbjct: 286 SYAANDAHAGYTLYRHLMGM 305 >gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S] gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S] Length = 908 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 17/123 (13%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----------GQKNAPN 65 + + I++DTET L RL + +S + I I A + N Sbjct: 336 SLKKAKYISIDTETSSLDIYTARLIGISISFKEFEGYYIPIEARGKIYIEKHYIIQKFNN 395 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + K I +FD +L F P F T IA+ L T + + L + Sbjct: 396 FFE--SNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAE 449 Query: 125 ELL 127 + L Sbjct: 450 KYL 452 >gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331] Length = 903 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 19/137 (13%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 + + + L L D + K+ H + + VL T +A+ L + Sbjct: 372 LDPAELAEADEQALAAWLADPGQPKVLHNAKNALRVLPEQGWRLEGISMDTALAAYLVKP 431 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLHA 162 L E LG + + SD QL + A D + Sbjct: 432 GRRSFALDALAVEYLGREL---------APAPASDGQLAFGADDRAEADALMAQARAVLD 482 Query: 163 LRLQFTEKLQRLGRSDL 179 L FT +L+ +G ++L Sbjct: 483 LGDAFTTRLKEVGATEL 499 >gi|308191626|sp|B4G5C9|WRNXO_DROPE RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5' exonuclease Length = 355 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + + ++ +K LV ++ K Sbjct: 160 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYVYQLTNLKKLPAALVALINHPKVR--L 216 Query: 80 H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F + + + L+ + + Sbjct: 217 HGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMD 276 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + ++ Sbjct: 277 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDLEQR 316 >gi|198451895|ref|XP_001358549.2| GA20513 [Drosophila pseudoobscura pseudoobscura] gi|308191627|sp|Q299L3|WRNXO_DROPS RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5' exonuclease gi|198131692|gb|EAL27690.2| GA20513 [Drosophila pseudoobscura pseudoobscura] Length = 356 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + + ++ +K LV ++ K Sbjct: 161 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYVYQLTNLKKLPAALVALINHPKVR--L 217 Query: 80 H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F + + + L+ + + Sbjct: 218 HGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMD 277 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + ++ Sbjct: 278 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDLEQR 317 >gi|195145659|ref|XP_002013809.1| GL23198 [Drosophila persimilis] gi|194102752|gb|EDW24795.1| GL23198 [Drosophila persimilis] Length = 348 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + + ++ +K LV ++ K Sbjct: 153 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYVYQLTNLKKLPAALVALINHPKVR--L 209 Query: 80 H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F + + + L+ + + Sbjct: 210 HGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMD 269 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + ++ Sbjct: 270 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDLEQR 309 >gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97] gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97] Length = 879 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 22/197 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75 IA DTET GL + ++ + + + + + +K Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVSKQISLESAKKAI 372 Query: 76 EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E IF H ++D ++ FG+ + T I + L + + + + D L Sbjct: 373 ELIFNHFVIGHNLKYDFKIIQNNFGLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431 Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + K + ++++ +L +YAA D L F + L+ + +LA Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLE-IPLLELAK 486 Query: 182 SC-CNFLMDRAELDLLG 197 +C +F+ ++ G Sbjct: 487 NCEFDFIKIIMMMEENG 503 >gi|4455316|emb|CAB36851.1| putative protein [Arabidopsis thaliana] gi|7268091|emb|CAB78429.1| putative protein [Arabidopsis thaliana] Length = 313 Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 19/174 (10%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRR-----DRLCIVQLSPGDGTVDIIR 55 M I+V + + + + +D E R ++ VQ+ D++ Sbjct: 112 MQLIKV----LDTKRDESGIAFVGLDIE--WRPSFRKGVLPGKVATVQICVDSNYCDVMH 165 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYT 114 I L ++ D K+ D LF+ +GV ++ V + +A++ Sbjct: 166 IFHSGIPQS-LQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGG-D 223 Query: 115 NQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDV---VHLHAL 163 + GL + L+ + K + +W LS +QLQYAA+D HL+ + Sbjct: 224 KKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYKV 277 >gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491] gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491] Length = 938 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDAK 520 >gi|219116192|ref|XP_002178891.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409658|gb|EEC49589.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 655 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 52/201 (25%) Query: 22 AIAVDTETLGLMPRRDRLCI--VQLS--------PGDGTVD--IIRIAAGQKNAP----- 64 +A+DTE P C+ +Q++ P D + ++ + + A Sbjct: 464 VVAIDTEWY-TNPVDGSTCLATIQVAIRRTNAGDPNDSQILSWVVDLIGTRYEAETRERY 522 Query: 65 -----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP---VFCTK--IASRLTRTYT 114 +LV L+ E + D+ +L R V + A++ Sbjct: 523 VEGCRDLVEELL-ENYVVLGFAVGHDLHILAEWV-ARPFNTNRVLDLQRLWAAK------ 574 Query: 115 NQHGLKDNLKELLGIN-------------ISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 GL ++ I +SK +Q S+W+ L+ Q++YA D L Sbjct: 575 AMPGLAACVERYAVIESNCENECDIKRYCLSKDEQCSEWNRRPLTSSQIEYAGLDAAILM 634 Query: 162 ALRLQFTEKLQRLGRSDLATS 182 L E+ + + Sbjct: 635 TL---LAERYREEQQWGKVDE 652 >gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B] gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B] Length = 928 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 345 LQTAELFAFDTETDNLDYMLANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + K+ ++D +VL + ++ + T + S + + +H + Sbjct: 405 KPILEDAAKAKVGQNLKYDASVLARY-DIELKGIKHDTMLESYIYNSVGGKHDMDSLALR 463 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q++ YAA D L + +++ Sbjct: 464 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDESLKT 523 Query: 180 ATSCCNF 186 Sbjct: 524 VYEEIEM 530 >gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] Length = 926 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 26/177 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------AGQKNAPNLVGM 69 + I +DTET L P +L + ++ G I +A Q+ + +L Sbjct: 348 LQSCRQIGLDTETNSLDPMTAKLVGISMAFAAGDAVYIPVAHTLAEQLDWQEISGSLKPF 407 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLG 128 L D+ KI ++D + G+ ++ + +AS + ++ H L D LG Sbjct: 408 LEDKNLAKIGQNLKYDQHIFKNH-GIDLQGIAGDAMLASYIVESHL-SHNLDDLAMRWLG 465 Query: 129 INI----------SKAQQSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRL 174 + +K +D ++ Q +YA D + ++ Sbjct: 466 LETISYESLCGKGAKQISFAD-----VNVAQATEYACQDADFALRIEQHLRTQMDAQ 517 >gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6] gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6] Length = 934 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 15/138 (10%) Query: 3 TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 TI E + A A + +A+DTET L P R R+ + + + + Sbjct: 339 TIFTTE-QLDAWIARLQAAPLVAIDTETDSLDPMRARIIGISFAVQPLEAAYVPVGHDYP 397 Query: 62 NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110 AP+ L L D K+ ++D V GV VR T + S + Sbjct: 398 GAPDQLPLDEVLARLRPWLEDAGTRKVGQNIKYDSHVFANH-GVTVRGYAHDTMLESYVL 456 Query: 111 RTYTNQHGLKDNLKELLG 128 + HGL LG Sbjct: 457 EAHKP-HGLASLADRHLG 473 >gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] Length = 879 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 22/197 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75 IA DTET GL + ++ + + + + + +K Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQSAKKAI 372 Query: 76 EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E IF H ++D ++ FG+ + T I + L + + + + D L Sbjct: 373 EVIFNHFVIGHNLKYDFKIIQNNFGLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431 Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + K + ++++ +L +YAA D L F + L+ +LA Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYISLRFYLYFLKNLE-TPLLELAK 486 Query: 182 SC-CNFLMDRAELDLLG 197 +C +F+ ++ G Sbjct: 487 NCEFDFIKIIMMMEENG 503 >gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275] Length = 931 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDAK 520 >gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309] gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309] Length = 908 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 62/177 (35%), Gaps = 19/177 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +AV E R D +V L+ + I + K L +L Sbjct: 333 ARAHSTLAVLVEGDMRPTRGDVTRLV-LASDKEALVIDPVELSPKQEEALGEVLATASSL 391 Query: 77 KIFHYGRFDIAVL----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 I H + L + GV F T +A+ L H L+D L +LG+ I Sbjct: 392 -IVHDAKGARHALSSRGWTLGGVE----FDTMLAAYLAHPDQRSHKLEDVLSRVLGVVIE 446 Query: 133 KAQQSS-------DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + S D A S Q++ A +LH L +L+ + L T Sbjct: 447 EGEGDSEALFDLGDMGAGP-SAAQVR-AGKLAAYLHPLASTLRSRLEESSEAALLTD 501 >gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25] gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25] gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25] gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25] Length = 928 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 18/187 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 345 LQTAELFAFDTETDNLDYMLANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 404 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + K+ ++D +VL + ++ + T + S + + +H + Sbjct: 405 KPILEDAAKAKVGQNLKYDASVLARY-DIELKGIKHDTMLESYIYNSVGGKHDMDSLALR 463 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + +Q + + L+ Q++ YAA D L + +++ Sbjct: 464 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDESLKT 523 Query: 180 ATSCCNF 186 Sbjct: 524 VYEEIEM 530 >gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] Length = 915 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 25/177 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + +A+DTET L P + R+ + + G + +A +AP L Sbjct: 334 LQAAELVAIDTETDSLEPMKARIVGISFAVEPGRGAYVPLAHAGPDAPEQLPLDAVLARL 393 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 L D R K+ ++D V G+ + V T + S + + H L+ + Sbjct: 394 KPWLEDASRAKLGQNLKYDRHVFANA-GIALAGVRHDTMLESYVLEAHKP-HSLESLAER 451 Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 LG K D + + Q+ +Y+A D + +++ Sbjct: 452 HLGR---KGLSYEDLCGKGVNQIPFAQVDVARATEYSAEDSEMALHVHQVLWPEIEA 505 >gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] Length = 932 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 30/192 (15%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A + I +DTET L +L + ++ G I + AP Sbjct: 337 TTETQFAALLDKLSKAERIGIDTETTSLDAMNAQLVGISIAFEAGEAAYIPLGHSMTAAP 396 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ +R + +AS + ++ Sbjct: 397 QQLDLQDTLGRLKPHLENGSLKKIGQNLKYDQHVFANY-GIALRGIAGDAMLASYIVESH 455 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQ-LQYAASDVVHLHA 162 HGL + + LG+ +K +D ++ EQ +YAA D Sbjct: 456 L-GHGLDELSERWLGLPTITYESLCGKGAKQISFAD-----VAVEQAAEYAAQDADFALR 509 Query: 163 LRLQFTEKLQRL 174 L ++ Sbjct: 510 LEAHLRAQMDEK 521 >gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae bacterium] Length = 894 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 69/203 (33%), Gaps = 28/203 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A+D ET L P + + + LS G I +A P L Sbjct: 315 LKKSEIFALDLETTSLNPVQAHVVGISLSCEAGVACYIPLAHRYFGVPEQLDLDLVLKKL 374 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D K +K+ ++D+ VL V F T +AS + +H + D ++ Sbjct: 375 KPLLEDPKLKKVGQNIKYDLIVLKSEGVNLVGVAFDTMLASYILNPSGRRHNMNDMARDY 434 Query: 127 LGINISK------------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 LG +K D + +YAA D L + LQ Sbjct: 435 LGYTTTKYKEVVGTASKEIGFDKVD------IELATEYAAEDADITWRLYENLSPLLQGD 488 Query: 175 GRSDLATSCCNFLMDRAELDLLG 197 L + AE++L G Sbjct: 489 DFKLLQELELPLIEVLAEMELHG 511 >gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] Length = 976 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 77/208 (37%), Gaps = 37/208 (17%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---KNAPN----------LVGM 69 +++DTET L P L + L G+ D+ I G K PN L Sbjct: 383 VSLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLSIEYVFSKLRNW 442 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K+EK +FD + F G+ ++ V F T +A L +HGL + L G Sbjct: 443 IEDPKKEKALQNSKFDRQIFFNH-GLILKGVTFDTLLADYLLNNQ-EKHGLSEISFRLFG 500 Query: 129 ---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + +K D + + + Y DV + F E+ + + +L Sbjct: 501 FKPPSFKETVGKNKDFSFVD-----IDEASI-YCGYDVFLTFKIVKIFKERFSKE-KDEL 553 Query: 180 A----TSCCNFLMDRAELDLLGWENVDI 203 +++++ G +DI Sbjct: 554 IKLFEEIELPLEPVLSQMEMNGIT-IDI 580 >gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901] gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901] Length = 908 Score = 51.9 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 24/178 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L + V + G + +A AP L Sbjct: 326 LQAAALFAFDTETTSLNYMDAEIVGVSFAVEPGKAAYVPVAHDYLGAPEQLSREHVLARL 385 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L ++ +K+ ++D VL + ++ + + T + S + + ++H + + Sbjct: 386 KPLLENDGLKKVGQNLKYDANVLANY-DIALKGIAYDTMLESYVHNSTGSRHDMDTLAEL 444 Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 LG K D A L+ Q++ YAA D L K+ Sbjct: 445 HLGH---KTIHFEDIAGKGAKQLTFNQIKLEEAGPYAAEDADITLRLHQALWPKVAEA 499 >gi|299768503|ref|YP_003730529.1| 3'-5' exonuclease [Acinetobacter sp. DR1] gi|298698591|gb|ADI89156.1| 3'-5' exonuclease [Acinetobacter sp. DR1] Length = 213 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ L +L ++K+ K+ + D +F+ G+ + Sbjct: 70 LIQLATAKKAYL---FHVNSSTLKFLQPILSNQKQIKVGFGLKND-KHIFHKKGIELESC 125 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 +A + +T Q G++ + L G ++K++ +S+W+ L+ +Q+ Sbjct: 126 VD--LAKSFSHFGFTQQMGVQKAIALLFGQYLAKSKKVGTSNWARKPLTSQQIS 177 >gi|297800892|ref|XP_002868330.1| hypothetical protein ARALYDRAFT_493524 [Arabidopsis lyrata subsp. lyrata] gi|297314166|gb|EFH44589.1| hypothetical protein ARALYDRAFT_493524 [Arabidopsis lyrata subsp. lyrata] Length = 286 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 8/136 (5%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 ++ VQ+ + D++ I L ++ D K+ D LF+ +GV + Sbjct: 146 KVATVQICVDNNYCDVMHIVHSGIPQ-RLQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSI 204 Query: 98 RPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAA 154 + V + +A++ + GL + L+ + K + +W LS +QLQYAA Sbjct: 205 KDVEDLSDLANQKIGGE-KKWGLASLTETLVCKELLKPNRIRLGNWEVYPLSKQQLQYAA 263 Query: 155 SDV---VHLHALRLQF 167 +D HL+ + Sbjct: 264 TDAYASWHLYQVLKDL 279 >gi|195644322|gb|ACG41629.1| hypothetical protein [Zea mays] Length = 202 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 6/150 (4%) Query: 23 IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 + +D E P ++ + +QL G + I ++ L L D + Sbjct: 49 VGLDVEWRPSFGPHQNPVATLQLCVG-HSCLIFQLLYADYVPGALAEFLGDRGIRFVGVG 107 Query: 82 GRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--S 137 D L G+ V + A R+ R Q GL+ ++ ++G+N+ K Q+ Sbjct: 108 VEADAERLSDDHGLVVANAEDLRXRXAERMXRPDLRQAGLRAXVQVVMGVNLVKPQRVTM 167 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQF 167 S W A LS EQ++YA D + + Sbjct: 168 SRWDASCLSYEQIKYACIDAFVSFEVARRL 197 >gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] Length = 920 Score = 51.9 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 12/186 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----AGQKNAPNLV-GMLVDEKREK 77 + +D ET GL +D + + + + ++ + NLV L E + Sbjct: 352 VCIDFETTGLDTFKDTIIGISFAIKSNEAFYLDLSGRTKIDKDKCMNLVFDTLEKEDIKV 411 Query: 78 IFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H +++ ++ G + + F T +A+ L ++ + D L N K Sbjct: 412 IGHNLKYEYKMM-RAIGKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYAD 470 Query: 137 SSDWSADDLSDEQL----QYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRA 191 +D + L D L +YA D F L+ DL + A Sbjct: 471 LTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLEDLFFNIEMPLVSVLA 530 Query: 192 ELDLLG 197 +++ G Sbjct: 531 DMEFDG 536 >gi|195625840|gb|ACG34750.1| hypothetical protein [Zea mays] Length = 202 Score = 51.5 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 6/150 (4%) Query: 23 IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 + +D E P + + +QL G + I ++ L L D + Sbjct: 49 VGLDVEWRPSFGPHXNPVATLQLCVG-HSCLIFQLLYADYVPGALAEFLGDRGIRFVGVG 107 Query: 82 GRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--S 137 D L G+ V + A R+ R Q GL+ ++ ++G+N+ K Q+ Sbjct: 108 VEADAERLSDDHGLVVANAEDLRGRAAERMNRPDLRQAGLRALVQVVMGVNLVKPQRVTM 167 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQF 167 S W A LS EQ++YA D + + Sbjct: 168 SRWDASCLSYEQIKYACIDAFVSFEVARRL 197 >gi|42572893|ref|NP_974543.1| WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3'-5' exonuclease/ nucleic acid binding / protein binding [Arabidopsis thaliana] gi|75327902|sp|Q84LH3|WEX_ARATH RecName: Full=Werner Syndrome-like exonuclease gi|28195109|gb|AAO33765.1| Werner Syndrome-like exonuclease [Arabidopsis thaliana] gi|38603882|gb|AAR24686.1| At4g13870 [Arabidopsis thaliana] gi|332657939|gb|AEE83339.1| Werner Syndrome-like exonuclease [Arabidopsis thaliana] Length = 288 Score = 51.5 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 19/178 (10%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRR-----DRLCIVQLSPGDGTVDIIR 55 M I+V + + + + +D E R ++ VQ+ D++ Sbjct: 112 MQLIKV----LDTKRDESGIAFVGLDIE--WRPSFRKGVLPGKVATVQICVDSNYCDVMH 165 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYT 114 I L ++ D K+ D LF+ +GV ++ V + +A++ Sbjct: 166 IFHSGIPQS-LQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGG-D 223 Query: 115 NQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDV---VHLHALRLQF 167 + GL + L+ + K + +W LS +QLQYAA+D HL+ + Sbjct: 224 KKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYKVLKDL 281 >gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594] Length = 938 Score = 51.5 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDEK 520 >gi|159487409|ref|XP_001701715.1| predicted protein [Chlamydomonas reinhardtii] gi|158280934|gb|EDP06690.1| predicted protein [Chlamydomonas reinhardtii] Length = 795 Score = 51.5 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 17/34 (50%) Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 SDW A LS Q+ YAA D L L + +L Sbjct: 316 SDWEARPLSARQMTYAAQDAHVLVRLYGELRNRL 349 >gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12] Length = 485 Score = 51.5 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 54/198 (27%) Query: 14 ECAARYVDAIAVDTETLGLMPRR-DRLCIVQLSP-------------GDGTVDI---IRI 56 +C + + DTET GL+P R D +C Q++ D V+ I + Sbjct: 283 DCKLGDLKYVIFDTETTGLLPERGDEVC--QIAACRVVNGKMVKTEMFDTLVNPGRPIPL 340 Query: 57 AAGQK---------NAPNLVGM------LVDEKREKIFHYGRFDIAVLFY---TFGVRV- 97 +A +AP+ + D I H FD+A + G R Sbjct: 341 SATNIHGITDAMVADAPDFLTAGRAFHGFADGAVL-IAHNAPFDMAFFYRKQAEIGARFD 399 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 PV T + S + T QH L + L + I + + + A D Sbjct: 400 HPVLDTVLLSAVIYGQTEQHSLDALAER-LNVTIPEEARHT--------------ALGDA 444 Query: 158 VHLHALRLQFTEKLQRLG 175 + + L+ LQ G Sbjct: 445 LATTEVFLKLLPMLQAKG 462 >gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] Length = 929 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 334 TTEAQFAALLDKLAQADKIGIDTETTSLDAMNAALVGISIAFQAGKAVYIPVGHSLTAAP 393 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 394 EQLDLQYVLGYLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 452 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 453 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 507 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 508 EAHLRAQMDAK 518 >gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797] gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797] Length = 900 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 66/205 (32%), Gaps = 29/205 (14%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--------AAGQKNAPNL 66 + D VD ET GL P + +S I + Q +L Sbjct: 312 ALLKEQDEFCVDLETTGLKPAEAEIVGWAISWEKHRGFYIPVEGPSGQLALDPQYVLEHL 371 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + ++D+ VL GV ++ V +AS L H L + Sbjct: 372 KPILEDPEILITNQNIKYDMVVLMR-VGVFLQGVSIDPMVASYLISAGERGHSLDKLSER 430 Query: 126 LLGINI---------SKAQQS---SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L + K Q+ D D+ +YA D L ++L+ Sbjct: 431 YLNHTMIPISELIGSGKQQKKMFEVD------VDKVAEYAVEDAEIAWQLSRILQDELKH 484 Query: 174 LGRSDLATSCCNFLMDR-AELDLLG 197 G +L L+ AE++ G Sbjct: 485 AGLWELYWELERPLISILAEMEFTG 509 >gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9] gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9] Length = 932 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 19/164 (11%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75 DTET L P + R+ V + G + +A L L + Sbjct: 360 DTETDSLDPMQARIVGVSFAVTPGEAAYVPLAHVAPGVEPQLDRDRVLAQLKPWLENPAA 419 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+ +D VL G+R+ V T + + ++ +H + + LG+ K Sbjct: 420 AKVLQNANYDRHVLANH-GIRLAGVADDTMLMDYVLASH-ERHNMDAMAERELGLATIKY 477 Query: 135 QQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172 + A + ++ YAA D LR KL Sbjct: 478 EDICGKGARQIGFAEVDLDTATRYAAEDADVTLRLRDVLAGKLD 521 >gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 958 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 363 TTEAQFAALLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 422 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 423 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 481 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 482 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 536 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 537 EAHLRAQMDAK 547 >gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996] gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996] Length = 933 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 338 TTEAQFAALLDRLSQADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 397 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 398 EQLDLQDVLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 456 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + + ++ YAA D L Sbjct: 457 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIEQATE----YAAQDADFALRL 511 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 512 EAHLRAQMDAK 522 >gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] Length = 1021 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 43/133 (32%), Gaps = 18/133 (13%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 +IAA + L +L KI +F AVL G+ ++ ++ S Sbjct: 483 PDQIAA-RDALEALRPILESPGVLKIGFNIKF-TAVLLAQHGITLQNADDVQLMSYALDA 540 Query: 113 YTNQHGLKDNLKELLGINISKAQQS-----SDWSADDLSDEQLQ------YAASDVVHLH 161 + HGL + LG K S LS +Q+ YAA D Sbjct: 541 GRHAHGLDALAETWLGH---KTLSYGEVIGS--GKAKLSFDQVAIDRATCYAAEDADVAL 595 Query: 162 ALRLQFTEKLQRL 174 L +L Sbjct: 596 RLWRVLKPRLVAE 608 >gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101] gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101] Length = 1045 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 72/214 (33%), Gaps = 42/214 (19%) Query: 22 AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLVG 68 +A DTET L PR L C G D+ I G K +L Sbjct: 382 PVAWDTETTSLEPRDAELVGIGC----CWGKNMEDVAYIPTGHKTDKNLDKVTVLESLKP 437 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL- 127 +L + K+F +FD V F T +AS + +H L++ L Sbjct: 438 VLESSEYPKVFQNSKFDRLVFRCQGIKLTGVFFDTMLASYVLNPEA-KHSLEEIYIRYLR 496 Query: 128 --GINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 GIN+ SK Q +D D L Y + V L + +L++ ++ Sbjct: 497 NVGINLQSYQDVVSKNQTIAD--LDILKVA--DYCGTQVWVTFQLVEKLRTELEKADKNK 552 Query: 179 ---------LATSCCNFLMDRAELDLLGWENVDI 203 L AE++ G +DI Sbjct: 553 STEKSLYRLLVDVEQPLEPVLAEMEFQGI-RIDI 585 >gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 957 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 43/197 (21%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------------- 62 V +AVDTET L L + +G I + ++ Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGISFGLANGDACYIPLTHKEQVTLEPQQSDLFAEQAEA 413 Query: 63 ------------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103 L +L + +KI ++D+ + GV+V V F T Sbjct: 414 ETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAFDT 472 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157 + S + T +H + + LG + ++ + + L+ +++ QYAA D Sbjct: 473 MLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDIASQYAAEDA 531 Query: 158 VHLHALRLQFTEKLQRL 174 L + +L++ Sbjct: 532 DVTMKLHQVLSPELEKA 548 >gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399] Length = 931 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDSMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSGRWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDAK 520 >gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013] Length = 930 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDSMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDEK 520 >gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S] gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S] Length = 928 Score = 51.5 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 66/191 (34%), Gaps = 39/191 (20%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCI------VQLSPGDGTVDIIRIAAGQKN------ 62 A +AVDTET L C+ V L+ G I + G K+ Sbjct: 338 AAVHAEGLVAVDTETDMLD------CVSCALVGVSLAVGPNAACYIPVGHGGKDMFAEKP 391 Query: 63 --------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 L +L D+ KI ++DI VL G+ + P T + S Sbjct: 392 DQLPLPLVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAPYDDTIVMSFDLDAGQ 450 Query: 115 N--QHGLKDNLKELLG-INIS-KA------QQSSDWSADDLSDEQLQYAASDVVHLHALR 164 + HG+ + + L + IS K Q S ++ L +YAA D L Sbjct: 451 SLAGHGMDEAARVHLNHVCISFKDVCGTGRSQIS-FAEVPLDKA-TEYAAEDADVTLRLW 508 Query: 165 LQFTEKLQRLG 175 F ++ G Sbjct: 509 RLFKSRIANEG 519 >gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 957 Score = 51.5 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 49/200 (24%) Query: 19 YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64 V +AVDTET L L + + GD + P Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLTHKEQVTLEPQQSDLFAEQ 410 Query: 65 -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100 L +L + +KI ++D+ + GV+V V Sbjct: 411 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVA 469 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154 F T + S + T +H + + LG + ++ + + L+ +++ QYAA Sbjct: 470 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASQYAA 528 Query: 155 SDVVHLHALRLQFTEKLQRL 174 D L +L++ Sbjct: 529 EDADVTMKLHQVLAPELEKA 548 >gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 957 Score = 51.5 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 49/200 (24%) Query: 19 YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64 V +AVDTET L L + + GD + P Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLMHKEQVTLEPQQSDLFAEQ 410 Query: 65 -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100 L +L + +KI ++D+ + GV+V V Sbjct: 411 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVA 469 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154 F T + S + T +H + + LG + ++ + + L+ +++ QYAA Sbjct: 470 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASQYAA 528 Query: 155 SDVVHLHALRLQFTEKLQRL 174 D L +L++ Sbjct: 529 EDADVTMKLHQVLAPELEKA 548 >gi|147902392|ref|NP_001084849.1| exonuclease 3'-5' domain-containing protein 1 [Xenopus laevis] gi|82237110|sp|Q6NRD5|EXD1_XENLA RecName: Full=Exonuclease 3'-5' domain-containing protein 1; AltName: Full=Exonuclease 3'-5' domain-like-containing protein 1 gi|47124003|gb|AAH70821.1| Exdl1 protein [Xenopus laevis] Length = 444 Score = 51.5 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 21/150 (14%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 +L +Q + + G K N L +L D+ K+ H R+ +L + +G+ Sbjct: 137 KLSWLQFATRSRVYLFDVLVLGSKVFKNGLQMVLEDKGILKVIHDCRWLGDILSHQYGII 196 Query: 97 VRPVFCTKIA-----SRLTRTYTNQHGLKDN---LKELLGINISK----AQQSS------ 138 + VF T++ S T + HG + L L + SK A + + Sbjct: 197 LNNVFDTQVGDVYLFSMETGGFLP-HGTRTLEECLIHHLSMLPSKVSFLAHRQTLTKEYH 255 Query: 139 D-WSADDLSDEQLQYAASDVVHLHALRLQF 167 D W + L+ + +V +L LR Sbjct: 256 DIWFDRPMDPTLLKLLSLEVTYLMPLRSAM 285 >gi|148227808|ref|NP_001081838.1| Werner syndrome ATP-dependent helicase homolog [Xenopus laevis] gi|29428101|sp|O93530|WRN_XENLA RecName: Full=Werner syndrome ATP-dependent helicase homolog; AltName: Full=Exonuclease WRN; AltName: Full=Focus-forming activity 1; Short=FFA-1 gi|3420291|gb|AAC63512.1| focus forming activity 1 [Xenopus laevis] Length = 1436 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 16/142 (11%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY--GRF-----DIAVLF 90 ++ ++Q+ + + I+ L +L DE K+ G D + Sbjct: 90 KVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYELKL 149 Query: 91 YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148 F +++A++ R + +K L + K+ + S+W L+++ Sbjct: 150 KGFIEL------SEMANQKLRC-KEKWTFNGLIKHLFKEQLYKRKSYRCSNWDIFLLTED 202 Query: 149 QLQYAASDVVHLHALRLQFTEK 170 Q YAA+D + + Sbjct: 203 QKLYAATDAYAGLLIYKKLEGM 224 >gi|262373686|ref|ZP_06066964.1| 3'-5' exonuclease [Acinetobacter junii SH205] gi|262311439|gb|EEY92525.1| 3'-5' exonuclease [Acinetobacter junii SH205] Length = 204 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 16/156 (10%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58 I+ + + E + V DTE+ +G ++QLS + + ++ Sbjct: 30 IQTLDQCLQIEAELKSVQVFGFDTESKPTFKVGEKSTGPH--LIQLSSLE-NAYLFQVNP 86 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR-TYTNQH 117 L +L +E++ K+ + D + G+ + +A + Y Q Sbjct: 87 EI--LAFLKPILENEQQLKVGFGLKNDASGFRRK-GIHPNGLID--LAKCFSNFGYNTQV 141 Query: 118 GLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 G++ + L K++ +S+WS LS +Q+ Sbjct: 142 GVQTAIALLFQRYFPKSKKISTSNWSVKQLSLQQIN 177 >gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] Length = 879 Score = 51.2 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 22/187 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75 IA DTET GL + ++ + + + + + +K Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQSAKKAI 372 Query: 76 EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E IF H ++D ++ FG+ + T I + L + + + + D L Sbjct: 373 ELIFNHFVIGHNLKYDFKIIQNNFGLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431 Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + K + ++++ +L +YAA D L F + L+ +LA Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLEAP-LLELAK 486 Query: 182 SC-CNFL 187 +C +F+ Sbjct: 487 NCEFDFI 493 >gi|70987206|ref|XP_749082.1| 3'-5' exonuclease/helicase (Wrn) [Aspergillus fumigatus Af293] gi|66846712|gb|EAL87044.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus fumigatus Af293] gi|159123147|gb|EDP48267.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus fumigatus A1163] Length = 419 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 26/183 (14%) Query: 39 LCIVQLSPGDGTVD----IIRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDIAVLFYT 92 + ++Q++ + + + A ++ +P+L +L + K + D L Sbjct: 211 VSLIQIANAERIALFQIALFKPARRPEDFISPSLRKILESSEITKAGVAIKADCTRLKNF 270 Query: 93 FGVRVRPVFCTKIASRLTRT--------YTNQHGLKDNLKELLGINISKAQ--QSSDWSA 142 G+ VR +F +L + L + ++E G+ ++K + DW+ Sbjct: 271 LGINVRGIFELSHLYKLVKYCQSDPALINRRSVNLSEQVEEHFGLPLAKDDDVRCGDWTT 330 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD--LLGWEN 200 L+ Q+QYAA+D L K + L + L AELD + E+ Sbjct: 331 A-LNYRQVQYAATDSYACLCLFNTMDAKRRALTPTPP-------LPAHAELDQPIRLVED 382 Query: 201 VDI 203 +D+ Sbjct: 383 LDV 385 >gi|302838751|ref|XP_002950933.1| hypothetical protein VOLCADRAFT_91414 [Volvox carteri f. nagariensis] gi|300263628|gb|EFJ47827.1| hypothetical protein VOLCADRAFT_91414 [Volvox carteri f. nagariensis] Length = 484 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 WS L+ E +YAA DV +LH L + ++ R Sbjct: 23 WSVRPLTRELCEYAAVDVRYLHLLAEALSPRMNRE 57 >gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703] gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703] Length = 938 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 35/218 (16%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLAQADKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V + + + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-DIALNGIAGDSMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIVQATE----YAAQDADFALRL 509 Query: 164 RLQF-----TEKLQRLGRSDL--ATSCCNFLMDRAELD 194 ++L+ + +L A + ++D Sbjct: 510 EAHLRAQMDDKQLEMYEKMELPVAQVLFEMERNGVQID 547 >gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 976 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 37/208 (17%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------QKNAPNLVGM 69 +++DTET L P L + L G+ D+ I G + L Sbjct: 383 VSLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLSIEDVFSKLRNW 442 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D ++EK +FD + F G+ ++ V F T +A L +HGL + L G Sbjct: 443 IEDPRKEKALQNSKFDRQIFFNH-GLDLKGVTFDTLLADYLLNNQ-EKHGLSEISFRLFG 500 Query: 129 ---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + +K D + Y DV + F E+ + + +L Sbjct: 501 FKPPSFKETVGKNKDFSFVDIGEASI------YCGYDVFLTFKIVKIFKERFSKE-KDEL 553 Query: 180 A----TSCCNFLMDRAELDLLGWENVDI 203 +++++ G +DI Sbjct: 554 IKLFEEIELPLEPVLSQMEMNGIT-IDI 580 >gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 957 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 49/200 (24%) Query: 19 YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64 V +AVDTET L L + + GD + P Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLTHKEQVTLEPQQSDLFAEQ 410 Query: 65 -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100 L +L + +KI ++D+ + GV+V V Sbjct: 411 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVA 469 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154 F T + S + T +H + + LG + ++ + + L+ +++ QYAA Sbjct: 470 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASQYAA 528 Query: 155 SDVVHLHALRLQFTEKLQRL 174 D L +L++ Sbjct: 529 EDADVTMKLHQVLAPELEKA 548 >gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] Length = 928 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A I +DTET L L + ++ G I + AP Sbjct: 333 TTEAQFAALLDKLSQAGKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 392 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 393 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 451 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + + ++ YAA D L Sbjct: 452 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIEQATE----YAAQDADFALRL 506 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 507 DAHLRAQMDAK 517 >gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 919 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 49/200 (24%) Query: 19 YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64 V +AVDTET L L + + GD + P Sbjct: 316 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLTHKEQVTLEPQQSDLFAEQ 372 Query: 65 -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100 L +L + +KI ++D+ + GV+V V Sbjct: 373 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVEGVA 431 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154 F T + S + T +H + + LG + ++ + + L+ +++ QYAA Sbjct: 432 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTLDKIAIDVASQYAA 490 Query: 155 SDVVHLHALRLQFTEKLQRL 174 D L +L++ Sbjct: 491 EDADVTMKLHQVLAPELEKA 510 >gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5] Length = 829 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 22/180 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKI 78 + +A D+ET L R L V +S + I + A L +L E + Sbjct: 132 IGPVAFDSETSALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILDSENHTIV 191 Query: 79 FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127 FH +FD+ Y G+ R + T + + HGLK + Sbjct: 192 FHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 251 Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + K + D++ D + D YAA D L F K+++ + Sbjct: 252 DFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKL 311 >gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35] gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35] Length = 855 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 22/180 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKI 78 + +A D+ET L R L V +S + I + A L +L E + Sbjct: 158 IGPVAFDSETSALYCRDGYLLGVSMSHQEYQGVYIDSDCLTEVAVYYLQKILDSENHTIV 217 Query: 79 FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127 FH +FD+ Y G+ R + T + + HGLK + Sbjct: 218 FHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 277 Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + K + D++ D + D YAA D L F K+++ + Sbjct: 278 DFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATLRLHNFFLPKIEKNEKL 337 >gi|224000055|ref|XP_002289700.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220974908|gb|EED93237.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 2068 Score = 51.2 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 30/158 (18%) Query: 22 AIAVDTETLGLMPRRD-RLCI------VQLSPGDGTVDIIRIAAGQKNAPN----LVGML 70 + DTE++ P R + VQ S + + G A + L +L Sbjct: 1814 VLGFDTESISKPPWCPERSSLPDGPATVQFSTPTTAIVFQLLHCGDGTASHAPACLRDVL 1873 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPV--------------FCTKIASRLTRTYTNQ 116 + K D L+ + F R+ + Sbjct: 1874 NNPLVIKTGVAIEDDAKELYQWSKESLENATQNPQHTLIDMRSRFD---LGRILPGTKHV 1930 Query: 117 HGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQY 152 GLK E+LG++ISK++ S+W +LS++Q+ Y Sbjct: 1931 SGLKTIALEILGVHISKSKKLSMSNWGKRNLSEKQIAY 1968 >gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196] Length = 938 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDSMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDEK 520 >gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1] Length = 962 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 20/167 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKI 78 I+ DTET GL P L + G + A + N + + + Sbjct: 389 ISFDTETTGLDPNEAELVGLSFCITKGEAYYVPCPADRNECIQLLNNFQPLFNNASITWV 448 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDN-LKELLG 128 ++D+ +L + +F T +A + G + + EL+G Sbjct: 449 GQNIKYDLLMLKWYGFELQGNIFDTMLAHYVIEPDGKSSMDLLSAKFLGYQPVSITELIG 508 Query: 129 INISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL 174 K Q + D+ E++ +YAA D L+ F +++ Sbjct: 509 KK-GKGQG----NMRDIEIEKIKEYAAEDADITLQLKNVFLPLIKKE 550 >gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826] Length = 878 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 22/191 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM----LVDEKREK- 77 +A DTET G+ + ++ S D + +A AP + + + K Sbjct: 318 VAFDTETTGVDSKSAKIVGFSFSFNDEDAYYVPVAHNYLGAPKQIDLKFATWAVGQIYKG 377 Query: 78 --IFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130 I ++D ++ G+ T I + L+ + G+ K L + Sbjct: 378 CVIGQNLKYDFEIVKNNLGLNPPANFKDTMILAWLSDPNS-SVGMDALAKRLYDYDTIKF 436 Query: 131 ---ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA-TSCCNF 186 + K Q D L + +YAA D F L LA F Sbjct: 437 EDVVKKGQTFGD---VPLENA-AKYAAEDAWITLKFYKTFQNTLDP-NLLALADMHEFPF 491 Query: 187 LMDRAELDLLG 197 ++ +++ G Sbjct: 492 ILTLFDMEQNG 502 >gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24] gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24] gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24] Length = 907 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 5/120 (4%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLV 71 AE A+ + VDT LG + V L+ DG + + L Sbjct: 339 AEHGAQPLGVATVDTWALGTGSVTE----VALAASDGKAAWFDPTELDEADETAFRSWLS 394 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 D R K+FH + + VL T +A+ L + L E L + Sbjct: 395 DPDRPKVFHNAKGAMRVLAEHGWSVAGVGMDTALAAYLVKPGRRSFDLDALSLEYLHREL 454 >gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102] gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102] Length = 930 Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 27/177 (15%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVG 68 D I +DTET L L + ++ G I + AP L Sbjct: 350 QADTIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGRLKP 409 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELL 127 L + +KI ++D V + + + + +AS + ++ HGL + + L Sbjct: 410 HLENPALKKIGQNLKYDQHVFANY-DIALNGIAGDSMLASYIIESHL-GHGLDELSERWL 467 Query: 128 GINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 G+ +K +D + ++ YAA D L ++ Sbjct: 468 GLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRLEAHLRAQMDAK 520 >gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916] gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916] Length = 1007 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 38/204 (18%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI--IRIAAGQKNAPN-------------- 65 +AVDTET L P + +L V + G D+ I + AP+ Sbjct: 400 PVAVDTETSDLNPFKAQLVGVGVCWGADLKDLAYIPVGHMAPAAPDGEDAAGEPEQLALD 459 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L L K ++D +L V T +A R +HGL Sbjct: 460 AVLQALAPWLASSDHPKALQNAKYDRLILLRHGLTLGGVVMDTLLA-DYLRDAAAKHGLD 518 Query: 121 DNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + GI +K ++S ++A + L Y A DV L L ++L Sbjct: 519 LMAQRDYGITPTLFTDLVGKAKDGKASSFAAVPVDQAAL-YCAMDVHLTRRLALDLRQQL 577 Query: 172 QRLGRSDLATSCCNFLMDRAELDL 195 +G L+++ EL L Sbjct: 578 TSMG------EQLPALLEQVELPL 595 >gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5] Length = 825 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 22/180 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKI 78 + +A D+ET L R L V +S + I + A L +L E + Sbjct: 128 IGPVAFDSETSALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILDSENHTIV 187 Query: 79 FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127 FH +FD+ Y G+ R + T + + HGLK + Sbjct: 188 FHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 247 Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + K + D++ D + D YAA D L F K+++ + Sbjct: 248 DFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKL 307 >gi|308191624|sp|B4M401|WRNXO_DROVI RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5' exonuclease Length = 330 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + + +++ ++ LV +L K Sbjct: 135 PLAFDMEWPF-SFQTGPGKSSVIQICVEERCCYVYQLSKLKRIPAALVALLNHSKVR--L 191 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 192 HGVNIKADFRKLERDFPEVAAEPLIEKCIDLGVWCNEVCETGGRWSLERLANFIAKKAMD 251 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + ++ Sbjct: 252 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDIEQR 291 >gi|195395252|ref|XP_002056250.1| GJ10837 [Drosophila virilis] gi|194142959|gb|EDW59362.1| GJ10837 [Drosophila virilis] Length = 323 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + + +++ ++ LV +L K Sbjct: 128 PLAFDMEWPF-SFQTGPGKSSVIQICVEERCCYVYQLSKLKRIPAALVALLNHSKVR--L 184 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 185 HGVNIKADFRKLERDFPEVAAEPLIEKCIDLGVWCNEVCETGGRWSLERLANFIAKKAMD 244 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + ++ Sbjct: 245 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDIEQR 284 >gi|316974026|gb|EFV57565.1| putative exonuclease mut-7-like protein [Trichinella spiralis] Length = 576 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 L D+ LG +SK+++ S+W L + Q+QYAA D + ++ + + Sbjct: 508 SLNDHCFVYLGYWLSKSERMSNWQRRPLREMQMQYAALDAYSVISICDRLED 559 >gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5] Length = 855 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 22/180 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKI 78 + +A D+ET L R L V +S + I + A L +L E + Sbjct: 158 IGPVAFDSETSALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILDSENHTIV 217 Query: 79 FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127 FH +FD+ Y G+ R + T + + HGLK + Sbjct: 218 FHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 277 Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + K + D++ D + D YAA D L F K+++ + Sbjct: 278 DFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKL 337 >gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5] gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5] Length = 855 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 22/180 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKI 78 + +A D+ET L R L V +S + I + A L +L E + Sbjct: 158 IGPVAFDSETSALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILDSENHTIV 217 Query: 79 FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127 FH +FD+ Y G+ R + T + + HGLK + Sbjct: 218 FHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 277 Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + K + D++ D + D YAA D L F K+++ + Sbjct: 278 DFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKL 337 >gi|260223224|emb|CBA33572.1| hypothetical protein Csp_B19730 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 205 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 24/170 (14%) Query: 11 IPAECAARYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 + A R A DTE+ +G + ++QLS + ++ + A Sbjct: 45 LAALDQLRSARAWGFDTESKPTFKVGELSDGPH--VLQLSTP-QRAWVFQLHDPECRA-V 100 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGL 119 ++ K D + + GV VF + Y G+ Sbjct: 101 AAQLMALPGVVKAGFGLGDDRKRILHKLGVEPVGVLELNHVFREQ-------GYRKDMGV 153 Query: 120 KDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 K + L SK +S+W+A L++ QL YAA+D + Sbjct: 154 KGAVAVLFHQRFIKSKKAATSNWAAPRLTEAQLVYAANDAYAAIRVYDAL 203 >gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 900 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 73/207 (35%), Gaps = 32/207 (15%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65 +AR +A+D P +C V L+ G + + AP Sbjct: 321 SARAAGRLALDVLATSREPMSAHVCGVALACEPGQAVYVPLGHRYLGAPAQLSMSDIDAV 380 Query: 66 LVGMLVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 + +L D + K+ H +F ++ +L + G+ F T +AS L L + + Sbjct: 381 MGPLLADPELPKVGHDVKFCEVILLRHRIGLVGVS-FDTMLASYLLDPEGKNQ-LHELAE 438 Query: 125 ELLGINI-------SKAQQSSDWSADDLSDEQL----QY--AASDVVHLHALRLQFTEKL 171 LG + K + + L + +L Y A +DV +L + +L Sbjct: 439 RELGAKMQTLDEVAPKRRGQA---QRALDEIELGEASSYGAAFADVA--LSLTDRLRPRL 493 Query: 172 QRLGRSD-LATSCCNFLMDRAELDLLG 197 + D L AE++L G Sbjct: 494 RAEKLEDLLVQIELPLSAVLAEMELTG 520 >gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013] Length = 983 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 27/179 (15%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + I +DTET L L + ++ G I + AP L Sbjct: 393 LSQAEKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGHL 452 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 L + +KI ++D V G+ + + +AS + ++ HGL + + Sbjct: 453 KPYLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESHL-GHGLDELSER 510 Query: 126 LLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 LG+ +K +D + ++ YAA D L ++ Sbjct: 511 WLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRLEAHLRAQMDEK 565 >gi|322712295|gb|EFZ03868.1| 3'-5' exonuclease [Metarhizium anisopliae ARSEF 23] Length = 281 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 71/212 (33%), Gaps = 40/212 (18%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAA 58 M I D+P E ++ D E L + I+QL P + T I Sbjct: 44 MNNI----EDLPKE-----PPSLYFDIEGDNLSRH-GTIAILQLYVMPINATYLIDVYTL 93 Query: 59 GQK-------NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111 G K N L +L K+F R D L F +++ + ++ TR Sbjct: 94 GDKCFSTPGGNGRTLKDILEFSSIPKVFFDVRNDSDALHGHFKIKLAGIQDLQLMELATR 153 Query: 112 TYTNQH--GLKDNLKELLGINIS----------KAQ--------QSSD-WSADDLSDEQL 150 +++ + GL ++ I K S D + L + + Sbjct: 154 SFSKRCVNGLSKCIERDGSFTIDEKLVWMETKKKGLLLFAPEEGGSYDIFKQRPLPKDIV 213 Query: 151 QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 Y A DV L L + KL + R+ + + Sbjct: 214 LYCAQDVQILPRLWSYYNRKLSKKWRTKMLDA 245 >gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76] gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385] Length = 983 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 381 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 440 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 441 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 499 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 500 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 554 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 555 EAHLRAQMDEK 565 >gi|195108811|ref|XP_001998986.1| GI24264 [Drosophila mojavensis] gi|308191614|sp|B4K934|WRNXO_DROMO RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5' exonuclease gi|193915580|gb|EDW14447.1| GI24264 [Drosophila mojavensis] Length = 329 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + + +++ +K LV ++ K Sbjct: 134 PMAFDMEWPF-SFQTGPGKSSVIQICVDERCCYVYQLSNLKKIPAALVALINHPKVR--L 190 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F V P+ + + L+ + + Sbjct: 191 HGVNIKADFRKLARDFPEVAAEPLIEKCVDLGVWCNEVCETGGRWSLERLANFIAKKAMD 250 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + + ++ Sbjct: 251 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREIEQR 290 >gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14] gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14] Length = 937 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDAK 520 >gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7] gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7] Length = 855 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 22/180 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-VDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + IA D+ET L R L V +S + V I + + L +L + + + Sbjct: 158 IGPIAFDSETSALYARDGYLLGVSMSHQEYQGVYIDSDSITEVAVHYLQKILDSKNHQIV 217 Query: 79 FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127 FH +FD+ Y G+ R + T + + HGLK + Sbjct: 218 FHNLKFDMHFYSYHLGLSFEKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 277 Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + K + D+S D + D YAA D L F K+++ + Sbjct: 278 DFELDKFKEDYCKAHKIKKEDFSYDLIPFDIMWPYAAKDTDATLRLHNFFLPKIEKNEKL 337 >gi|148747811|ref|YP_001285777.1| DNA polymerase [Phormidium phage Pf-WMP3] gi|146230044|gb|ABQ12452.1| DNA polymerase [Phormidium phage Pf-WMP3] Length = 363 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 11/118 (9%) Query: 22 AIAVDTETLGLMPRRD---RLCIV--Q-LSPGDGTVDIIRIAAGQKNAPNL-VGMLVDEK 74 + +D E+ L + D R+ ++ Q L+ + + +L V + D Sbjct: 9 PVVLDIESDDLSAQYDVDTRVYLIGVQFLADYGLYAAGDYVYGSLEEMRDLCVSLANDTD 68 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L G+ ++ FCT++A+ T+ + +++L L G+ + Sbjct: 69 VTFVIHNASFDVPAL-RLRGIPIKRYFCTQVAA---HTWHPKSSEENSLDSLTGMKLD 122 >gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902] gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 879 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 22/197 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75 IA DTET GL + ++ + + + + + +K Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAI 372 Query: 76 EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E IF H ++D ++ F + + T I + L + + + + D L Sbjct: 373 EVIFNHFVIGHNLKYDFKIIQNNFDLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431 Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + K + ++++ +L +YAA D L F + L+ +LA Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLE-TPLLELAK 486 Query: 182 SC-CNFLMDRAELDLLG 197 +C +F+ ++ G Sbjct: 487 NCEFDFIKIIMMMEENG 503 >gi|307565057|ref|ZP_07627570.1| 3'-5' exonuclease domain protein [Prevotella amnii CRIS 21A-A] gi|307346226|gb|EFN91550.1| 3'-5' exonuclease domain protein [Prevotella amnii CRIS 21A-A] Length = 153 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 11/145 (7%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGVRVR 98 +Q+S G N+ ++ +L D K+ H D +L Sbjct: 2 LQVSTHKECFLFRLNIIGMTNS--IISLLEDITIPKVGISLHD---DFHMLHKRISFNPG 56 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 + + N L+ + G I K +Q ++W +L+D+Q QYA+ D Sbjct: 57 YFIDLQ--DCVKDIGINDLSLQKIYANIFGKKIVKREQLTNWENIELTDKQKQYASIDAW 114 Query: 159 HLHALRLQFTEKLQRLGRSDLATSC 183 L + ++L++ G +L + Sbjct: 115 ACINLYERI-KELKQTGDYNLIKND 138 >gi|30682626|ref|NP_193123.2| WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3'-5' exonuclease/ nucleic acid binding / protein binding [Arabidopsis thaliana] gi|11121455|emb|CAC14871.1| exonuclease [Arabidopsis thaliana] gi|332657938|gb|AEE83338.1| Werner Syndrome-like exonuclease [Arabidopsis thaliana] Length = 285 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 19/173 (10%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRR-----DRLCIVQLSPGDGTVDIIR 55 M I+V + + + + +D E R ++ VQ+ D++ Sbjct: 112 MQLIKV----LDTKRDESGIAFVGLDIE--WRPSFRKGVLPGKVATVQICVDSNYCDVMH 165 Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYT 114 I L ++ D K+ D LF+ +GV ++ V + +A++ Sbjct: 166 IFHSGIPQS-LQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGG-D 223 Query: 115 NQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDV---VHLHA 162 + GL + L+ + K + +W LS +QLQYAA+D HL+ Sbjct: 224 KKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYK 276 >gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701] gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701] Length = 997 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 68/221 (30%), Gaps = 51/221 (23%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------- 65 A IA+DTET L P + L V L G+G+ D+ I G + Sbjct: 376 AATDPDQPIALDTETTSLNPFQAELVGVGLCWGEGSSDLAYIPIGHQPPSPAPSADLLTP 435 Query: 66 ------------------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 L L + K ++D +L V Sbjct: 436 ASAEPPADSAVLSQQLPLDQVLTALAPWLESARHPKTLQNAKYDRLILLRHGLSLEGVVM 495 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAA 154 T +A R +HGL+ + G ++K + A +Y A Sbjct: 496 DTLLA-DYLRDANAKHGLEVLAERNFGFTPTSFSELVAKGETF----AAVPIAAAARYCA 550 Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 DV L +LQ+LG L+D+ EL L Sbjct: 551 MDVHVTWRLTPLLRGQLQQLG------EALPKLLDQVELPL 585 >gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498] Length = 968 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 29/193 (15%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRL---CI-VQ-----------LSPGDGTVD---IIRI 56 A+ + DT+T+ L P + +L + +Q ++ + + I+ Sbjct: 373 LEAQEQGYFSFDTKTISLDPMQAKLVGFSLALQPGKAAYVPLEHVAEEENLLGGGRIVPQ 432 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 QK L +L ++ KI ++D V+ + + T + S + Sbjct: 433 IETQKALALLKPILENQAVLKIGQNIKYDWLVMKQY-NIVMCSFDDTMLLSYALEAGIST 491 Query: 117 HGLKDNLKELLGIN-IS-KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFT 168 HG+ K LG IS K S +S Q+ YAA D L Sbjct: 492 HGMDVLSKRWLGHKPISYKDLTHS--GRKIVSFAQVDLKQATLYAAEDADITLRLWQVLK 549 Query: 169 EKLQRLGRSDLAT 181 +L + + Sbjct: 550 PQLVAQKMTKIYE 562 >gi|240278412|gb|EER41918.1| 3'-5' exonuclease/helicase [Ajellomyces capsulatus H143] Length = 947 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 26/152 (17%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQK-------NAPNLVGMLVDEKREKIFHYGRFDIAVL 89 D + ++QL+ + I +A +P L +L K+ R D L Sbjct: 746 DNVSVIQLAS-KERIAIFHLALFNPANSLQHLLSPTLKRILESPDIVKVGVAIRADCTRL 804 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKELLGINISKA--QQSSDW 140 + G+R + ++ + + N L ++E LG+ + K + W Sbjct: 805 YKFLGIRTNNICEVSRLHKVVKHHLNPKLIDKRLVNLAQQVEEHLGLPLDKDPEIRCGGW 864 Query: 141 SADDLSDEQLQ--YAASDVVHLHALRLQFTEK 170 S L+ Q+Q YAA L K Sbjct: 865 SKK-LNYRQVQYPYAA------LQLFHVLEAK 889 >gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001] gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001] Length = 965 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 23/202 (11%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQK 61 T+R E A+ AVDTET GL P + ++ G + + G Sbjct: 364 TVRTAEALQKWISTAQEAGICAVDTETDGLDPLAANIVGFSIATAPGKACYVPLKHEGTL 423 Query: 62 NAPNLVGMLVD------------EKREKIFHYGRFDIAVLFYTFGVRVRPVF---CTKIA 106 AP + VD + KIFH +FD+ +L + G+ + + T + Sbjct: 424 EAPTGEQLAVDAALKLLAPLLQDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLI 482 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHL 160 S + G+ + L + + + Q+ +YAA D Sbjct: 483 SYSQSAGLHGQGMDELSNLHLNHTPITYDSVTGTGRNRVPFAQVPVETATKYAAEDADVT 542 Query: 161 HALRLQFTEKLQRLGRSDLATS 182 L L+ L Sbjct: 543 LRLWYVLHPTLRTNKALALYEQ 564 >gi|219128242|ref|XP_002184326.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404127|gb|EEC44075.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 311 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 46/185 (24%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGD-----GTVDIIRIAAGQKNA-------PNLV 67 + +D E TL L R D ++QL+ D G + ++ K+ L+ Sbjct: 102 VLGMDVEYATLELDIRGDLPAMLQLASPDPTGPVGLFWLDKLPNHGKSILHDGEAYKPLL 161 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVR----PVF-------------CTKIASRLT 110 +L EK+ D+ L +GV P F T++A R Sbjct: 162 SILASSDIEKVGVGLTSDVRHLLDWWGVSGAATYSPYFIANTVDISEVYSSDTRVADR-- 219 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQ------SSDWSADDLSDEQLQYAASDVVHLHALR 164 L++ + +L + + K + S W A+ L+ + +YAA+D + Sbjct: 220 -------SLQEMCESVLQLRLRKRKSISRNKKRSHWRAEVLTKQMKEYAANDAACAVEVY 272 Query: 165 LQFTE 169 L Sbjct: 273 LSLCA 277 >gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC3046] Length = 976 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 25/140 (17%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------QKNAPNLVGM 69 +++DTET L P L + L G+ D+ I G + L Sbjct: 383 VSLDTETNSLNPINAELVGIGLCLGEENDDLFYIPLGHQTKKGTSNQLSIEDVFSKLRNW 442 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K+EK +FD + F G+ ++ V F T +A L +HGL + L G Sbjct: 443 IEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTFDTLLADYLLNNQ-EKHGLSEISFRLFG 500 Query: 129 ---------INISKAQQSSD 139 + +K D Sbjct: 501 FKPPLFKETVGKNKDFSFVD 520 >gi|221067820|ref|ZP_03543925.1| 3'-5' exonuclease [Comamonas testosteroni KF-1] gi|220712843|gb|EED68211.1| 3'-5' exonuclease [Comamonas testosteroni KF-1] Length = 214 Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 14/164 (8%) Query: 12 PAECAARYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66 A A + DTE+ +G +VQL+ V ++++ Sbjct: 37 AAFQAMNAEPVLGFDTESKPIFNIGQQDNGPH--LVQLATAS-QVWLLQLHRPMA-LEVS 92 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR-TYTNQHGLKDNLKE 125 +L E K+ D L G + + + SR R Y G++ Sbjct: 93 RMVLAAEHICKVGFGLDNDKHSLPRRLGAPLINIQD--LDSRFKRLGYGPSVGVRAAAAL 150 Query: 126 LLGINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 +L + SK +S+W+A +LS Q +YAA+D + Sbjct: 151 VLQQSFRKSKRTTTSNWAAAELSSAQRRYAANDAHAPAVIYAHL 194 >gi|261190752|ref|XP_002621785.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis SLH14081] gi|239591208|gb|EEQ73789.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis SLH14081] Length = 1112 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 25/191 (13%) Query: 3 TIRVHEGDIPAECAARYV---DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIR 55 T+ +E A++ + +D E D + ++QL+ + + Sbjct: 820 TVHYCTSLQTSERVAQHFLSETVVGLDLEWKAQASTRDALVDNVSMIQLAS-KERIAVFH 878 Query: 56 IA-------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 +A +P L +L + K+ R D L+ G++ + + Sbjct: 879 LALFNPANSPQHLVSPTLKRLLESPELVKVGVAIRADCTRLYKFLGLQTTNLCEVSRLHK 938 Query: 109 LTRTYTNQ-------HGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAASDVVH 159 + + + N L + ++E LG+ + K + WS L+ Q+QY A+D Sbjct: 939 VVKHHLNPKLINKRLVNLAEQVEEHLGLPLDKDPEIRCGGWSKK-LNYRQVQYVATDPYA 997 Query: 160 LHALRLQFTEK 170 L K Sbjct: 998 ALQLFHVLEAK 1008 >gi|125525535|gb|EAY73649.1| hypothetical protein OsI_01538 [Oryza sativa Indica Group] Length = 288 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 9/127 (7%) Query: 37 DRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLV-GMLVDEKREKIFHYGRFDIAVLFYTF 93 + I+QL GD + I+++ AG + P LV +L D + + A L + Sbjct: 139 PTVAILQLCAGD-SCLILQLLHVAGARRVPPLVGDLLADPSVRLVGIGIGENAAKLADGY 197 Query: 94 GVRVRPVFCTKIAS--RLTRTYT-NQHGLKDNLKELLGINISK--AQQSSDWSADDLSDE 148 GVR + RL R + GLK ++E+LG+ + K SDW L Sbjct: 198 GVRCAAPVDLEDVCDRRLGRLPGARRLGLKGYVREVLGLTMEKPMDVTRSDWERRHLDAA 257 Query: 149 QLQYAAS 155 Q++YA S Sbjct: 258 QVRYACS 264 >gi|239614893|gb|EEQ91880.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis ER-3] Length = 1112 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 25/191 (13%) Query: 3 TIRVHEGDIPAECAARYV---DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIR 55 T+ +E A++ + +D E D + ++QL+ + + Sbjct: 820 TVHYCTSLQTSERVAQHFLSETVVGLDLEWKAQASTRDALVDNVSMIQLAS-KERIAVFH 878 Query: 56 IA-------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 +A +P L +L + K+ R D L+ G++ + + Sbjct: 879 LALFNPANSPQHLVSPTLKRLLESPELVKVGVAIRADCTRLYKFLGLQTTNLCEVSRLHK 938 Query: 109 LTRTYTNQ-------HGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAASDVVH 159 + + + N L + ++E LG+ + K + WS L+ Q+QY A+D Sbjct: 939 VVKHHLNPKLINKRLVNLAEQVEEHLGLPLDKDPEIRCGGWSKK-LNYRQVQYVATDPYA 997 Query: 160 LHALRLQFTEK 170 L K Sbjct: 998 ALQLFHVLEAK 1008 >gi|262280380|ref|ZP_06058164.1| 3'-5' exonuclease [Acinetobacter calcoaceticus RUH2202] gi|262258158|gb|EEY76892.1| 3'-5' exonuclease [Acinetobacter calcoaceticus RUH2202] Length = 213 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 46/114 (40%), Gaps = 9/114 (7%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ L +L + K+ K+ + D +F+ G+ + Sbjct: 70 LIQLATEQKAYL---FHVNSSTLKFLQPILSNPKQIKVGFGLKND-KHIFHKKGIELEGC 125 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 +A + + Q G++ + L ++K++ +S+W+ LS +Q+ Sbjct: 126 VD--LAKGFSHFGFKQQLGVQKAVALLFEQYLAKSKKVGTSNWARKPLSSQQIS 177 >gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666] gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666] Length = 944 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 15/137 (10%) Query: 5 RVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + ++ A+ + +AVDTET L ++ + S G I + + Sbjct: 350 TIFTWELLDSWLAKIEAAELVAVDTETTSLDEMLAQIVGISFSVTPGEAAYIPLTHDYPD 409 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTR 111 AP L L + K+ + ++D V G+ V+ T + S + Sbjct: 410 APAQLPRDEVLARLKPWLENPAIAKLGQHVKYDRHVFANH-GIEVQGYAHDTMLQSYVLE 468 Query: 112 TYTNQHGLKDNLKELLG 128 + HGL + +G Sbjct: 469 VHKP-HGLASLAERHVG 484 >gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12] gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12] Length = 934 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 13/118 (11%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A+DTET L P R RL + LS G + +A AP L L + Sbjct: 361 AIDTETDSLDPMRARLVGISLSVAPGEAAYLPLAHAYPGAPEQLPMAEVLERLRPWLENA 420 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + K+ ++D V GV +R T + S + + H L + LG + Sbjct: 421 DKPKLGQNAKYDRHVFANA-GVTIRGYAHDTLLESYVIEAHKP-HSLDSLVSRHLGRD 476 >gi|260550793|ref|ZP_05825000.1| 3'-5' exonuclease [Acinetobacter sp. RUH2624] gi|260406103|gb|EEW99588.1| 3'-5' exonuclease [Acinetobacter sp. RUH2624] Length = 213 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 50/114 (43%), Gaps = 9/114 (7%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ L +L ++K+ K+ + D +F+ G+++ Sbjct: 70 LIQLATEHKAYL---FHVNSSTLKFLQPILSNQKQLKVGFGLKND-KHIFHKKGIKLESC 125 Query: 101 FC-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 TK S + +Q G++ + L G ++K++ +S+W+ L+ +Q+ Sbjct: 126 VDLTKSFSHF--GFKHQMGVQKAVALLFGQYLAKSKKVGTSNWAQKPLTSQQIS 177 >gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76] Length = 916 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 314 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 373 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 374 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 432 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 433 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 487 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 488 EAHLRAQMDEK 498 >gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58] gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58] Length = 938 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDEK 520 >gi|149450029|ref|XP_001520465.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 479 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFGV 95 LC +Q++ G + N L +L D K+ H R D L + +G+ Sbjct: 234 LCWLQVATTARVYLFDIHLLGHRAFENGLRLVLEDRGVLKVTHDCRWLSD--CLAHQYGI 291 Query: 96 RVRPVFCTKI 105 + VF T++ Sbjct: 292 VLANVFDTQV 301 >gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136] Length = 930 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDEK 520 >gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] Length = 990 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 59/189 (31%), Gaps = 34/189 (17%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG---------------- 59 +A+DTET L P + L + ++ G+G ++ I G Sbjct: 381 CTDPAAPVALDTETTALNPFQAELVGLGVAWGEGLTELAYIPIGHQPPVADDLLSETPTP 440 Query: 60 ------QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 + L L + K ++D +L V T +A R Sbjct: 441 PRQLPLDEVLTALAPWLASAEHPKALQNAKYDRLILLRHGLPLGGVVMDTLLA-DYLRDA 499 Query: 114 TNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 +HGL+ + LG + K + A + L Y DV L Sbjct: 500 NAKHGLEVLAQRNLGFTPTSYGELVPKGASFA---AVPVEAAAL-YCGMDVHVTRRLSPL 555 Query: 167 FTEKLQRLG 175 +L+ LG Sbjct: 556 LRRQLEELG 564 >gi|327352334|gb|EGE81191.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis ATCC 18188] Length = 1064 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 18/145 (12%) Query: 42 VQLSPGDGTVDIIRIA-------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94 +QL+ + + +A +P L +L + K+ R D L+ G Sbjct: 866 IQLAS-KERIAVFHLALFNPANSPQHLVSPTLKRLLESPELVKVGVAIRADCTRLYKFLG 924 Query: 95 VRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKELLGINISKAQ--QSSDWSADDL 145 ++ + ++ + + N L + ++E LG+ + K + WS L Sbjct: 925 LQTTNLCEVSRLHKVVKHHLNPKLINKRLVNLAEQVEEHLGLPLDKDPEIRCGGWSKK-L 983 Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170 + Q+QY A+D L K Sbjct: 984 NYRQVQYVATDPYAALQLFHVLEAK 1008 >gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH] gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH] Length = 905 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 21/196 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------PNLVGM 69 + +++DTET ++ + +S + I I +K + Sbjct: 333 LKKTSYVSIDTETTSTNVYEAQILGISVSFKEFESYYIPIETKEKKSIEREYITQKFNEF 392 Query: 70 LVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + + I +FD + + F P F T IA+ + T + L ++ L Sbjct: 393 FKTKPKL-IGQNYKFDYKIFTRHGFNAIP-PYFDTMIAAYVIDPNT-KVSLDFLSEKYL- 448 Query: 129 INISK--AQQSSDWSADDLSDEQLQ----YAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + K Q L D L+ YAA D L F +KL+ L Sbjct: 449 --MHKNIKYQEIVSQNGTLKDIPLETVSNYAAEDADITFRLFKIFAKKLKEDNLESLMID 506 Query: 183 -CCNFLMDRAELDLLG 197 F E++ G Sbjct: 507 VEMPFSNVITEMEENG 522 >gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42] gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42] Length = 922 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 65/199 (32%), Gaps = 27/199 (13%) Query: 13 AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65 AR A+DTET L R + V S G I +A +AP Sbjct: 336 DGWLARLKAAPLAALDTETTSLDELRAEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLA 395 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGL 119 L L D K+ + ++D V G++VR T + S + + HGL Sbjct: 396 EVLERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYAHDTMLQSYVLEVHKP-HGL 453 Query: 120 KDNLKELLGIN-IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + G IS K + ++ + Y+ D + +LQ Sbjct: 454 ASLAERHTGRTGISYEDLCGKGAKQIPFAQVPVDKA-AAYSCEDSDQTLDVHRVLWPQLQ 512 Query: 173 R----LGRSDLATSCCNFL 187 G +L +C L Sbjct: 513 ADDKLRGIYELEMACSETL 531 >gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945] Length = 930 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDEK 520 >gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218] Length = 932 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 18/158 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R + A DTET L L V + +G + +A +AP L Sbjct: 349 LRSAEVFAFDTETDSLDYMVANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWALAQL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D ++ K+ ++D ++L + ++ + T +AS + + +H + Sbjct: 409 KPILEDAQQAKVGQNLKYDASILARY-DINMQGIAHDTMLASYVYNSVGGKHDMDSLALR 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDV 157 + + +Q + + L+ Q+ YAA D Sbjct: 468 FMQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDA 505 >gi|195037591|ref|XP_001990244.1| GH19231 [Drosophila grimshawi] gi|308191616|sp|B4JF25|WRNXO_DROGR RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5' exonuclease gi|193894440|gb|EDV93306.1| GH19231 [Drosophila grimshawi] Length = 331 Score = 50.4 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 14/160 (8%) Query: 22 AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D E + ++Q+ + + +++ K L ++ K Sbjct: 136 PMAFDMEWPF-SFQTGPGKSSVIQICVDERCCYVYQLSKLNKIPAALAALINHPKVR--L 192 Query: 80 H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H + D L F + P+ + + L+ + + Sbjct: 193 HGVNIKADFRKLERDFPEMSAEPLIEKCVDLGVWCNQVCETGGRWSLERLANFIAKKAMD 252 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K++ + S W L + QL YAA DV + + ++ Sbjct: 253 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREIEQR 292 >gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z] gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z] Length = 956 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 38/149 (25%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------------ 65 + + IAVDTET L L + +G I +A + A Sbjct: 352 QQANLIAVDTETDSLDAMTAELVGISFGLENGEACYIPLAHVHEVAEAEEQAQADLFAEP 411 Query: 66 -----------------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-F 101 L +L + KI ++D+ + G++V+ V F Sbjct: 412 KATGKTSWHRLPDQLNREDCLARLKPVLENADIRKIGQNLKYDLTIFANH-GIQVQGVAF 470 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGIN 130 T + S + + T +H + D + LG Sbjct: 471 DTMLESYVLNS-TGRHNMDDLAERYLGHQ 498 >gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972] gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972] Length = 932 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 18/158 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 R + A DTET L L V + +G + +A +AP L Sbjct: 349 LRSAEVFAFDTETDSLDYMVANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWVLAQL 408 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D ++ K+ ++D ++L + ++ + T +AS + + +H + Sbjct: 409 KPILEDAQQAKVGQNLKYDASILARY-DINMQGIAHDTMLASYVYNSVGGKHDMDSLALR 467 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDV 157 + + +Q + + L+ Q+ YAA D Sbjct: 468 FMQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDA 505 >gi|118091603|ref|XP_001234592.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 359 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 19/145 (13%) Query: 44 LSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102 ++ G + N L +L D+ K+ H R+ LF+ + V + VF Sbjct: 132 IATKSHVFLFDIFLLGPQAFRNGLQAVLEDKNILKVMHDCRWISDCLFHQYSVLLDNVFD 191 Query: 103 TKIA-----SRLTRTYTNQ--HGLKDNLKELLGI-----NISKAQQ-----SSD-WSADD 144 T++A S T + L++ L + L I + K +Q + D W Sbjct: 192 TQVADVLQFSVATGGFFPHRTCTLQECLMQHLRIPSKWKTLMKCKQQMALENPDTWFLRP 251 Query: 145 LSDEQLQYAASDVVHLHALRLQFTE 169 L LQ A + L L + Sbjct: 252 LPASLLQVLALKAMCLLLLHSSLMD 276 >gi|294951230|ref|XP_002786896.1| hypothetical protein Pmar_PMAR011449 [Perkinsus marinus ATCC 50983] gi|239901447|gb|EER18692.1| hypothetical protein Pmar_PMAR011449 [Perkinsus marinus ATCC 50983] Length = 94 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 L+ L + KA++ S+W LS QL+YAA+D + Sbjct: 36 SLQGLCALFLHKRLLKAERISNWEQVPLSPSQLEYAATDAWVSRQVLEAMRA 87 >gi|154336351|ref|XP_001564411.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061446|emb|CAM38473.1| hypothetical protein, unknown function [Leishmania braziliensis MHOM/BR/75/M2904] Length = 527 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 19/153 (12%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKREK 77 Y+ + +D+E P + +VQ + + I + + L D K Sbjct: 11 YLRIMGIDSEWFRSSP----VAVVQFATSSHCFVLHISFFDDRALPAAVKEALCDPAIIK 66 Query: 78 --IFHYGRFDIAVLFYTFGVRVRPVFCTKIA---SRLTRTYTNQHGLKDNLKELLGINIS 132 + G D++ L + ++ V +A + + + LK + + ++I Sbjct: 67 CGVGING--DVSRLRKEQDITIQSVLD--VAHYSAFFGLHHGARSNLKALAESVANLSIV 122 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVV--HLH 161 K S+W L D + YAA D + +L Sbjct: 123 KDNKITRSNWEL-PLPDSSVNYAAEDALASYLI 154 >gi|308472106|ref|XP_003098282.1| hypothetical protein CRE_08446 [Caenorhabditis remanei] gi|308269268|gb|EFP13221.1| hypothetical protein CRE_08446 [Caenorhabditis remanei] Length = 231 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%) Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 L + + G+ I K + SDW+ L +QL YAA D + LH + Sbjct: 62 QGTGMSLLKMVDDWAGVKIFKTETMSDWTVQTLRHDQLHYAAMDAIALHYI 112 >gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271] gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271] Length = 315 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 69/232 (29%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA---------- 154 ++ + H L+ K +LGI +S D+ + AA Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLSSHNAF---------DDCITCAAVYQKCASIEE 173 Query: 155 -----SDVVHLHA--LRLQFTEKLQRLGRS-DLATSCCNFLMDRAELDLLGW 198 SD L + + L R R + + + LD+ + Sbjct: 174 ETNRKSDTKVLDETAVYEAVKKMLVRNKRDIEWV----RCMNVGSYLDIKAF 221 >gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] Length = 941 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 13/122 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + +AVDTET L R ++ V S G I + +AP L Sbjct: 362 EAAELVAVDTETTSLDEMRAQIVGVSFSVTPGEAAYIPLTHDYPSAPEQLPLDEVLARLK 421 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 L + R K+ ++D V G+ V+ T + S + T HGL + Sbjct: 422 PWLENPARPKLGQNIKYDRHVFANH-GIEVQGYAHDTMLQSYVLEV-TKPHGLASLAERH 479 Query: 127 LG 128 +G Sbjct: 480 VG 481 >gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221] gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221] gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3] Length = 879 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 22/197 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75 IA DTET GL + ++ + + + + + +K Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAI 372 Query: 76 EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E IF H ++D ++ F + + T I + L + + + + D L Sbjct: 373 EVIFNHFVIGHNLKYDFKIIQNNFDLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431 Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + K + ++++ +L +YAA D L F + L+ +LA Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLE-TPLLELAK 486 Query: 182 SC-CNFLMDRAELDLLG 197 +C +F+ ++ G Sbjct: 487 NCEFDFIKIIMMMEENG 503 >gi|268533708|ref|XP_002631983.1| Hypothetical protein CBG10261 [Caenorhabditis briggsae] gi|187031193|emb|CAP29729.1| hypothetical protein CBG_10261 [Caenorhabditis briggsae AF16] Length = 413 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 22/138 (15%) Query: 19 YVDAIAVDTE-TLGLMPRRDRLCIVQLSPGD-GTVDIIRI-AAGQKNAPNLVGMLVD-EK 74 + I VDTE ++P + +V D TV + RI +K N+ ++++ K Sbjct: 241 FTKPIYVDTENAYKVIPHGSKTALVTFCDADMKTVLLWRIHKHTRKEVENMKKLMIELSK 300 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K +G+ P+ T LK GI ISK Sbjct: 301 IRKFAAFGKE--EFF------DPIPLAD------FASGGT---SLKSLAMSH-GIEISKT 342 Query: 135 QQSSDWSADDLSDEQLQY 152 + SDW+A++L D+Q+QY Sbjct: 343 ETMSDWTAEELRDDQMQY 360 >gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970] gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970] Length = 939 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 72/222 (32%), Gaps = 40/222 (18%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A + I +DTET L L + ++ G I + AP Sbjct: 337 TTEAQFAALLDKLSQAEKIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 396 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 397 EQLDLQYVLDRLKPHLENSALKKIGQNLKYDQHVFANY-GIALNGIVGDAMLASYIIESH 455 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + LG+ +K +D + ++ YAA D L Sbjct: 456 L-GHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATE----YAAQDADFALRL 510 Query: 164 RLQF-----TEKLQRLGRSDL----ATSCCNFL---MDRAEL 193 ++L+ + +L + +DRAEL Sbjct: 511 EAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAEL 552 >gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6] gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6] Length = 628 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 36/168 (21%) Query: 50 TVDI-IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG--VRVRPVFCTKIA 106 TVDI R + +L G+L + + +K H +F ++ + G + +F +A Sbjct: 69 TVDIADRPELKESIIGDLAGLLENGRIKKTLHDSKFVLSFIRARAGRKLNFCSIFDVMLA 128 Query: 107 SRLTRTYTNQ-----------------HGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 S++ + H L + LGI + + Q Sbjct: 129 SQICWSGYYYLTPSGNPKNPWTKRLVDHSLASLAERHLGIILD-EEGC---------PAQ 178 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 AA+ L L + L + +A + E+++ G Sbjct: 179 G--AAA----LLPLHDILADLLAKNDLQRVADLEFRAAIALVEMEISG 220 >gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 997 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 12/119 (10%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLK 124 L +L D KI ++D+ ++ GV V P T + S + T HG+ + Sbjct: 470 LKPLLEDRSVLKIAQNLKYDLVIMSRY-GVDVAPFDDTMLISYVLDAGTPHGHGMDALAE 528 Query: 125 ELLGINI--SKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG 175 + LG K S + +Q+ +AA D L L +L G Sbjct: 529 KWLGHTPLQLKDVTGS--GKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKG 585 >gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1] gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1] Length = 923 Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 61/205 (29%), Gaps = 26/205 (12%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI E R A+DTET L P + L + + G + Sbjct: 325 TIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPG 384 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 AP L +L D K+ +G++D+ VL V T + S + + Sbjct: 385 APVQLDRGQALALLQPLLEDPAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTS 444 Query: 113 YTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS----DEQLQYAASDVVHLH 161 +H + + LG + K + S E QYAA D Sbjct: 445 GHARHDMDTLARRHLGYETMKYVDLVGKGAKQI-----PFSHVGVQEATQYAAEDADITL 499 Query: 162 ALRLQFTEKLQRLGRSDLATSCCNF 186 L KL R + Sbjct: 500 RLHCVLAPKLLAEPRLERVYREIEM 524 >gi|298707097|emb|CBJ29889.1| WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3\'-5\' exonuclease/ nucleic acid binding [Ectocarpus siliculosus] Length = 248 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 111 RTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 R L D E+L + + K + ++ W LS +QL YAA+D L Sbjct: 49 RRRRGMWSLADLCAEVLELELKKPASLRTGSWEKRPLSVDQLFYAAADAYAGLRLWQTMH 108 Query: 169 EK 170 E Sbjct: 109 EM 110 >gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] Length = 920 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 56/176 (31%), Gaps = 37/176 (21%) Query: 22 AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAG---------QKNAPNLVG 68 +A DTET + P L C G+G + I G + L Sbjct: 331 PVAWDTETNSIDPLEADLVGIGC----CWGEGPTALAYIPVGHTAGEQLSMETVLSALKP 386 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 +L D++ K+F ++D VL VF +AS + N H L D L Sbjct: 387 ILEDQQYPKVFQNAKYDRLVLRRAGVSLTGVVFDPMLASYVLNPE-NSHNLSDLALRYLE 445 Query: 129 INISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR 173 + +D L + QY SDV + L LQ Sbjct: 446 LT---TVSYTD-----LVPKGKTIGEVAIAEVAQYCGSDVHTTYRLVPLLKADLQE 493 >gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium] Length = 942 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 18/181 (9%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLV 71 D+ET L + + + + + A ++ A + Sbjct: 364 LLNQQSEFCFDSETTSLNTLEAEIVGLSFAVKSFSAYYVPFPANREEAQAKINAFRSLFE 423 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG-- 128 D+ + I ++D VL G+ ++ +F T +A +H + + L Sbjct: 424 DDTKTLIGQNIKYDFQVLKNY-GIEIKNKLFDTMVA-HFLIMPEMRHNMDILAQTYLNYS 481 Query: 129 -INIS-----KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 ++I K ++ + S D+ E++ +YAA D L+ F KL L T Sbjct: 482 PVSIETLIGKKGKEQT--SMRDVEIEKIKEYAAEDADVTFQLKTAFAPKLIENEVEKLFT 539 Query: 182 S 182 Sbjct: 540 E 540 >gi|115436114|ref|NP_001042815.1| Os01g0299700 [Oryza sativa Japonica Group] gi|113532346|dbj|BAF04729.1| Os01g0299700 [Oryza sativa Japonica Group] Length = 237 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 9/127 (7%) Query: 37 DRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLV-GMLVDEKREKIFHYGRFDIAVLFYTF 93 + I+QL GD + I+++ AG + P LV +L D + + A L + Sbjct: 88 PTVAILQLCAGD-SCLILQLLHVAGARRVPPLVGDLLADPSVRLVGIGIGENAAKLADGY 146 Query: 94 GVRVRPVFCTKIAS--RLTRTYT-NQHGLKDNLKELLGINISK--AQQSSDWSADDLSDE 148 GVR + RL R + GLK ++E+LG+ + K SDW L Sbjct: 147 GVRCAAPVDLEDVCDRRLGRLPGARRLGLKGYVREVLGLTMEKPMDVTRSDWERRHLDAA 206 Query: 149 QLQYAAS 155 Q++YA S Sbjct: 207 QVRYACS 213 >gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] Length = 874 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 20/157 (12%) Query: 46 PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTK 104 GD V I + +L DE K+ + + D+ G +R + F + Sbjct: 349 AGDEAVYI---PHNVNGWELVWDLLADETIPKVTYNAK-DVCNACKAKGTELRGLCFDIQ 404 Query: 105 IASRLTRTYTNQHGLKDNLKELLGI---NISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 +A+ L ++ L + + LG+ ++ K YA + Sbjct: 405 LAAYLLEPTAAKYPLTELACQHLGLAVGDMDKEH-----LGTP------DYAGWAAEVVQ 453 Query: 162 ALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L EKL G ++L + +E+++ G Sbjct: 454 RLYPVLKEKLVAAGLAELYEEIELPLVPVLSEMEIAG 490 >gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] Length = 986 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 30/183 (16%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG---------------QKN 62 + +A+DTET L P L + + G+G D+ I G Sbjct: 383 DRLKPVAIDTETTALNPFCAELVGLGVCWGEGLQDLAYIPIGHHPPAALLDADAACQLPL 442 Query: 63 APNLVGM---LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 L + L K ++D +L V T +A R +HGL Sbjct: 443 EAVLKAIAPWLASNDHPKALQNAKYDRLILLRHGLALEGVVMDTLLA-DYLRDAAAKHGL 501 Query: 120 KDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + + I + K Q +D + S Y DV L ++ +L+ Sbjct: 502 EVMAEREFKITPTGFSELVGKGQTFADVAIPTAS----LYCGMDVHLTRRLAIRLRAQLE 557 Query: 173 RLG 175 +G Sbjct: 558 NMG 560 >gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190] Length = 975 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A + I +DTET L L + ++ G I + AP Sbjct: 381 TTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 440 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 441 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 499 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 500 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 554 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 555 EAHLRAQMDEK 565 >gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 537 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 33/220 (15%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + ++ A +AR +A+D P +C V L+ G + + Sbjct: 48 VLTTREELEAFARSARAAGRLALDVLATSREPMSAHVCGVALACEPGQAVYVPLGHRYLG 107 Query: 63 APN----------LVGMLVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTR 111 AP + +L D + K+ H +F ++ +L + G+ F T +AS L Sbjct: 108 APAQLSMSDIDAVMGPLLADPELPKVGHDVKFCEVILLRHRIGLVGVS-FDTMLASYLLD 166 Query: 112 TYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQL----QY--AASDVV 158 L + + LG + K + + L + +L Y A +DV Sbjct: 167 PEGKNQ-LHELAERELGAKMQTLDEVAPKRRGQA---QRALDEIELGEASSYGAAFADVA 222 Query: 159 HLHALRLQFTEKLQRLGRSD-LATSCCNFLMDRAELDLLG 197 +L + +L+ D L AE++L G Sbjct: 223 --LSLTDRLRPRLRVEKLEDLLVQIELPLSAVLAEMELTG 260 >gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118] gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118] Length = 957 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 13/122 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D +A+DTET L R ++ + S G I +A +AP L Sbjct: 378 QAADLVALDTETTSLDEMRAQIVGISFSVTPGEAAYIPLAHAYPDAPAQLPLADVLAKLK 437 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 L D +K+ + ++D V G+ V+ T + S + T HGL + Sbjct: 438 PWLQDASHKKLGQHVKYDRHVFANH-GIEVQGYAHDTMLQSYVLEV-TKPHGLASLAERH 495 Query: 127 LG 128 LG Sbjct: 496 LG 497 >gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099] gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099] Length = 1003 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 12/119 (10%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLK 124 L +L D KI ++D+ ++ G+ V P T + S + T HG+ + Sbjct: 476 LKPLLEDRSVLKIAQNLKYDLVIMSRY-GIDVAPFDDTMLISYVLDAGTPHGHGMDQLAE 534 Query: 125 ELLGINI--SKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG 175 + LG K S + +Q+ +AA D L L +L G Sbjct: 535 KWLGHTPLQLKDVTGS--GKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKG 591 >gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581] gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae] Length = 1455 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 45/212 (21%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRL-----CIVQ--LSPGDGTVDI---IRIAAGQKNA 63 + + D ET GL P + + ++Q + + I Sbjct: 393 NFDLKSARYVVFDLETTGLSPVYNEIIEFGAVVIQDGIQTESHQFFVKAKEPIPTEITKI 452 Query: 64 PNLVGMLVDE-------------KREK----IFHYGRFDIAVLFYTFGVRV-----RPVF 101 N+ +VDE K K + H +FD L F +P+ Sbjct: 453 TNITQEMVDEQGIEATEAFYRISKIIKDSILVAHNAKFDFNFLAELFKKEASMTIDQPII 512 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKA-QQSSDWSADDLSDEQLQYAASDVVHL 160 T SR H LK+ + +L+G+ + +D+ A+ LS L + Sbjct: 513 DTLQVSRFLNPSQKSHSLKN-VSKLIGLYYDETVAHRADYDAEILSKVWLNF-------- 563 Query: 161 HALRLQFTEKLQRLGRSDL-ATSCCNFLMDRA 191 L + + L + + + S + ++ Sbjct: 564 --LTQILDQDITDLKKLEYTSQSIFDLKPEKV 593 >gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 957 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 49/200 (24%) Query: 19 YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64 V +AVDTET L L + + GD + P Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLTHKEQVTLEPQQSDLFAEQ 410 Query: 65 -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100 L +L + +KI ++D+ + GV+V V Sbjct: 411 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVA 469 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154 F T + S + T +H + + LG + ++ + + L+ +++ +YAA Sbjct: 470 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASKYAA 528 Query: 155 SDVVHLHALRLQFTEKLQRL 174 D L T +L + Sbjct: 529 EDADVTMKLHQVLTPELDKT 548 >gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13] gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13] Length = 914 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 29/172 (16%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------AGQKNAPNLVGMLVDE 73 A+DTET L +L + LS G I +A Q L L + Sbjct: 340 AIDTETTSLDVMNAKLVGISLSIEPGHAAYIPLAHHSMEQSEQLPLQSVLDKLKPWLENP 399 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 K+ K+ ++D VL G+R++ + T + S + ++ +H + + L Sbjct: 400 KKHKVGQNLKYDSHVLANY-GIRLQGIVHDTLLESYVLESH-RRHDMDSLSERFLDY--- 454 Query: 133 KAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR 173 K +D Q+ YAA D L +L+ Sbjct: 455 KPVSYTDICGK--GASQIGFDEIAIDVATHYAAEDADVTLQLHQSMWPRLKE 504 >gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] Length = 976 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 25/140 (17%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------QKNAPNLVGM 69 +++DTET L P L + L G+ D+ I G + L Sbjct: 383 VSLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGHQTKKETPDQLSIEDVFSKLRNW 442 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 + D K+EK +FD + F G+ ++ V F T +A L +HGL + L G Sbjct: 443 IEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTFDTLLADYLLNNQ-EKHGLSEISFRLFG 500 Query: 129 ---------INISKAQQSSD 139 + +K D Sbjct: 501 FKPPSFKETVGKNKDFSFVD 520 >gi|295666185|ref|XP_002793643.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226277937|gb|EEH33503.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 270 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 72/205 (35%), Gaps = 36/205 (17%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNA--------P 64 + ++ +D E + L R R+ I+QL + ++ I A Sbjct: 24 DTLPTSPPSLYIDLEGISL-SREGRISILQLFNHPKNHLYLVDIHVLGHEAFTTAAANGK 82 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR--LTRTYTNQHGL 119 +L +L K+F R D F+ F +R++ V ++ ASR GL Sbjct: 83 SLRTILESPDVPKVFFDVRNDSNAFFFHFDIRLQGVEDIQLMENASRPGFLSRKRFVSGL 142 Query: 120 KDNLKELLGINIS-----KAQQ-------SSDWS-------ADDLSDEQLQYAASDVVHL 160 ++ I++S K + + D A L L Y D+ L Sbjct: 143 ARCVEHDAPISLSEKRLWKEHKERRVRLFNPDCGGSYETLNARPLPQAILDYGVCDLTFL 202 Query: 161 HALRLQFTEKLQRLGRS--DLATSC 183 LR + KL ++ D+AT Sbjct: 203 PLLRTVYWSKLSPEWKALVDVATKE 227 >gi|125547066|gb|EAY92888.1| hypothetical protein OsI_14692 [Oryza sativa Indica Group] Length = 256 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 85 DIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWS 141 D +F + V V+P+ + +A+ + L + + + K + +W Sbjct: 153 DARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCRELPKPSNIRMGNWE 212 Query: 142 ADDLSDEQLQYAASDV---VHLHALRLQF 167 A LS +QLQYAA+D HL+ + Sbjct: 213 AYVLSKQQLQYAATDAYISWHLYEVLQSL 241 >gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937] gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937] Length = 944 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 59/180 (32%), Gaps = 34/180 (18%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------------------- 59 DTET GL L V L+ G + + Sbjct: 355 DTETDGLDTLTANLVGVSLAIKPGEAAYLPLGHITSRVYSSNIYSSTVSPATRMSTQLDR 414 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHG 118 + L +L D+ KI +FD V+ G+ +R + F T + S + + +H Sbjct: 415 DRVLALLKPLLEDDGIRKIGQNLKFDKGVMARY-GIDLRGIAFDTMLESYVLDSVAGRHD 473 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172 + + L ++ + + L+ +Q+ YAA D L KL+ Sbjct: 474 MDSLSERYLQHKTITFEEIAGKGKNQLTFDQIPLAQASVYAAEDADVTLRLHETLWAKLE 533 >gi|126330751|ref|XP_001372295.1| PREDICTED: similar to Werner syndrome, [Monodelphis domestica] Length = 1293 Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 53/158 (33%), Gaps = 19/158 (12%) Query: 22 AIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 I D E P R+ ++QL + + IA+ L +L E K Sbjct: 80 VIGFDMEWPPPFWKGRP--GRVALIQLCVSESKCYLFHIASMSVFPRGLKMLLESETIRK 137 Query: 78 IFHYG--RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT---NQHGLKDNLKELLGINIS 132 G D L F V +R ++AS L L +K L + Sbjct: 138 ---AGLGTGDQWKLLRDFDVHLRSF--VELAS-LANEKLRCKENWSLDGLVKHLFRKCLL 191 Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 K Q + W L+++Q QYAA D + Q Sbjct: 192 KEQSIRCGRWEDFPLTEDQKQYAAIDAYASFIIHQQLE 229 >gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon] gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon] Length = 609 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 15/141 (10%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58 + HE D+ + + +DTET L + + ++Q ++ + Sbjct: 16 NVVEHEDDLDGFESFIRSNLRILGLDTETTDLGIYKPDFGIRLIQFGNP-WESWVLPVER 74 Query: 59 GQKNAPNLVGMLVDEKREK-IFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--R 111 G V L +K EK + H FD+ V+ T GV + ++ TKI S L R Sbjct: 75 GGVFVGAAVTAL--QKVEKFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPR 132 Query: 112 TYTNQHGLKDNLKELLGINIS 132 Y G L+EL I Sbjct: 133 AYKEG-GTGHKLEELTKFYID 152 >gi|123449410|ref|XP_001313424.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] gi|121895307|gb|EAY00495.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] Length = 605 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 53/167 (31%), Gaps = 24/167 (14%) Query: 3 TIRVHEGDIPAECAARYVD--AIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIR--I 56 T+ E D +EC ++ D I +D E + + Q G V I+ + Sbjct: 41 TVISSESDKLSECFNQFDDGNVICIDLEWKPNRNDQAHP-ISLFQFCSSKG-VLIVPNSL 98 Query: 57 AAGQKNAPNLVGM--LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 G + N + + D L F + I Sbjct: 99 EDGTDSLHNFLQAHTFYAKGI-------SQDKKKLRQMFDETFD-IID--IEKYYLTPNN 148 Query: 115 NQHGLKDNLKELLGINI----SKAQQSSDWSADDLSDEQLQYAASDV 157 + + L+G K +SDW+ LS +Q+ YAA DV Sbjct: 149 LPLNFEQMITTLVGEPSAQFKDKKMTTSDWTKRPLSVKQILYAAFDV 195 >gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As] Length = 922 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 13/118 (11%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A+DTET L P R RL + LS G + +A AP L L + Sbjct: 349 AIDTETDSLDPMRARLIGISLSVTPGEAAYLPLAHAYPGAPEQLPMAEVLERLRPWLENA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + K+ ++D V GV +R T + S + + H L + LG + Sbjct: 409 DKPKLGQNAKYDRHVFANA-GVTIRGYAHDTLLESYVIEAHKP-HSLDSLVSRHLGRD 464 >gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 686 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 43/197 (21%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---------------------- 56 V +AVDTET L L + +G I + Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGISFGLANGEACYIPLTHKEQVTLEPQQSDLFAEPAEV 413 Query: 57 --------AAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103 A Q N L +L +KI ++D+ + GV+V V F T Sbjct: 414 ETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQVEGVAFDT 472 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157 + S + T +H + + LG + ++ + + L+ +++ QYAA D Sbjct: 473 MLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASQYAAEDA 531 Query: 158 VHLHALRLQFTEKLQRL 174 L +L++ Sbjct: 532 DVTMKLHQVLAPELEKA 548 >gi|294901270|ref|XP_002777314.1| hypothetical protein Pmar_PMAR024154 [Perkinsus marinus ATCC 50983] gi|239884856|gb|EER09130.1| hypothetical protein Pmar_PMAR024154 [Perkinsus marinus ATCC 50983] Length = 326 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 18/116 (15%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-------PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 +++D+E P+ + ++Q+S D +D+ + L + V Sbjct: 216 VSIDSER---EPKTQAISLIQVSLYGPHRLRRDFIIDVQLFDDKEYLGRELAELFVSFNS 272 Query: 76 EKIFHYGRFDIAVLFYTFGV------RVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 KI H D+ F RV + T+I +R + GL +E Sbjct: 273 LKILHSATNDLRHFEKNFEACECIRERVNNLLDTQILG--SRLGQTKLGLAKLAEE 326 >gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521] gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521] gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] Length = 956 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 L ++ ++K +K+ H G+ + + V+ F T IA+ L + +++ L + ++ Sbjct: 455 LKNVMENDKVKKVIHDGKN-LVTFLNKNNITVKEFDFDTAIAAYLLDSAQSKYNLTELIE 513 Query: 125 ELLGINISKAQQ 136 + L I + Sbjct: 514 KYLNKEIDGIES 525 >gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium] Length = 944 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKIFHY 81 DTET L+ L + LS G + A Q G+L E +KI Sbjct: 374 DTETTSLVAIEAELVGLALSYYAGEAYYVPFPADKAQTQAILEEFRGVLESENIKKIGQN 433 Query: 82 GRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 ++DI VL + ++ F T +AS L N+H + ++ L + K Sbjct: 434 LKYDITVLKKY-NIEIKGECFDTMLASYLLDP-DNRHSMDAMAEKYLNYSPVK 484 >gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200] gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200] Length = 318 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRILGIRLS 153 >gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 957 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 43/197 (21%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---------------------- 56 V +AVDTET L L + +G I + Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGISFGLANGEACYIPLTHKEQVTLEPQQSDLFAEPAEV 413 Query: 57 --------AAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103 A Q N L +L +KI ++D+ + GV+V V F T Sbjct: 414 ETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQVEGVAFDT 472 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157 + S + T +H + + LG + ++ + + L+ +++ QYAA D Sbjct: 473 MLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDIASQYAAEDA 531 Query: 158 VHLHALRLQFTEKLQRL 174 L + +L++ Sbjct: 532 DVTMKLHQVLSPELEKA 548 >gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20] gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 957 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 49/200 (24%) Query: 19 YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64 V +AVDTET L L + + GD + P Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLTHKEQVTLEPQQSDLFAEQ 410 Query: 65 -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100 L +L + +KI ++D+ + GV+V V Sbjct: 411 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVA 469 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154 F T + S + T +H + + LG + ++ + + L+ +++ +YAA Sbjct: 470 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASKYAA 528 Query: 155 SDVVHLHALRLQFTEKLQRL 174 D L +L + Sbjct: 529 EDADVTMKLHQVLVPELDKT 548 >gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18] gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18] Length = 892 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 71/209 (33%), Gaps = 35/209 (16%) Query: 17 ARYVDAIAVDTETLGLMPR------RDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65 + A A+D ET L P C+ I I AP Sbjct: 310 LKKAPAFAIDLETTSLNPLDASIVGYAVSCL------AHEAYYIPIGHRYLGAPEQLPEA 363 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119 L +L D R+KI ++D VL + GV + ++ T +A+ L N GL Sbjct: 364 LVLELLGPLLTDPDRKKIGQNLKYDYQVLQQS-GVELAGIWCDTMLAAYLVNPSRNSQGL 422 Query: 120 KDNLKELLGINISKAQQSSDWSADDL--SDEQLQYAA------SDVVHLHALRLQFTEKL 171 E L + + + +L S+ L A +D +L L K+ Sbjct: 423 DALALEYLDHRMISYAEVAGTGKCELNFSEVDLDRAGPYSCEDADATYL--LHEILLPKV 480 Query: 172 QRLGRSD-LATSCCNFLMDRAELDLLGWE 199 + G L + A+++L G + Sbjct: 481 REQGMEGLLFDVEMPLMKILADMELCGVK 509 >gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment'] Length = 873 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 42/210 (20%) Query: 9 GDIPAECAARYVDAIAV--------DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 G+ A AIAV D E GL C + D + A Sbjct: 303 GEAARGLLASDSVAIAVALRGDGTADGEFFGLA-----FC----AEPDVALCCFPDAMTD 353 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQ 116 + +L E+ KI H D+ + G + + F T +AS L + Sbjct: 354 SYLERVRPVLAGERPGKIGH----DLKRIMTAIGKKGVALRGLSFDTMVASYLLNPNRSD 409 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLS-------DEQLQYAASDVVHLHALRLQFTE 169 H L + ELLG+ W + + ++ AA + + L+ Sbjct: 410 HSLATLVFELLGVK---------WEQGPGARGGNDGRETAMRGAAEEAHLVWQLKEALLP 460 Query: 170 KLQRLGRSDLATS-CCNFLMDRAELDLLGW 198 +L + G L T+ + A ++ +G+ Sbjct: 461 QLGQAGLLPLFTTIEMPLIEVLASMEEVGF 490 >gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E] gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E] Length = 965 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 38/149 (25%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------------------- 57 R V +AVDTET L P L + + +G I +A Sbjct: 361 RQVKLVAVDTETNALDPMLAELVGISFALENGEACYIPLAHVHQVAAQAENAQGDLFAES 420 Query: 58 -----------AGQKN----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-F 101 GQ N L +L + + +KI ++D+ + G+ ++ V F Sbjct: 421 EQSSESRWEPVVGQLNKAECLSQLKPLLENPEIKKIGQNIKYDLTIFANN-GINMQGVTF 479 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGIN 130 T + S + + T +H + D + LG + Sbjct: 480 DTMLESYVLNS-TGRHNMDDLAERYLGHH 507 >gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640] gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06] Length = 932 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 71/222 (31%), Gaps = 40/222 (18%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A + I +DTET L + ++ G I + AP Sbjct: 337 TTEAQFAALLDKLSQAEKIGIDTETTSLDAMNAAPVGISIAFQAGEAVYIPVGHSLTAAP 396 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 397 EQLDLQYVLDRLKPHLENPALKKIGQNLKYDQHVFAN-CGIALNGIVGDAMLASYIIESH 455 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + LG+ +K +D + ++ YAA D L Sbjct: 456 L-GHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATE----YAAQDADFALRL 510 Query: 164 RLQF-----TEKLQRLGRSDL----ATSCCNFL---MDRAEL 193 ++L+ + +L + +DRAEL Sbjct: 511 EAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAEL 552 >gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP] gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP] Length = 962 Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 48/200 (24%) Query: 18 RYVDAIAVDTETLGLMPRRDRL------------CIV------QLS-----------PGD 48 +AVDTET + L C + Q+S + Sbjct: 359 EQAKLVAVDTETDNVDAMSAHLVGISFSLSNGEACYIPLAHTQQISVQPQQEDLFAETDN 418 Query: 49 GTVDIIRIAAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103 + ++A+ Q N L +L + + +K+ ++D+ V G+ ++ V F T Sbjct: 419 DAITQFQLASNQLNLTACLAQLKPLLENVEIKKVGQNIKYDLTVFANH-GIELQGVAFDT 477 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAA 154 + S + T +H + + + L K D + L+ +++ +YAA Sbjct: 478 MLESYTLNS-TGRHNMDELAERYLDH---KTIAFEDIAGKGKNQLTFDKIAIETATEYAA 533 Query: 155 SDVVHLHALRLQFTEKLQRL 174 D L Q L + Sbjct: 534 EDADITMKLHQQLITSLAKT 553 >gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355] Length = 908 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A + I +DTET L L + ++ G I + AP Sbjct: 314 TTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 373 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 374 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 432 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 433 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 487 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 488 EAHLRAQMDEK 498 >gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22] gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22] Length = 908 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 2/79 (2%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRT 112 A + + L D R K+FH + + V G V V T +A+ L + Sbjct: 378 DPTALDEADETAWAAWLADPARPKVFHNAKSAMRVFAEH-GWTVEGVGMDTALAAYLVKP 436 Query: 113 YTNQHGLKDNLKELLGINI 131 L E LG + Sbjct: 437 GRRSFDLDALTLEYLGREL 455 >gi|308455884|ref|XP_003090432.1| hypothetical protein CRE_12365 [Caenorhabditis remanei] gi|308263351|gb|EFP07304.1| hypothetical protein CRE_12365 [Caenorhabditis remanei] Length = 308 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 25/48 (52%) Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 LK + + G+ I K + S W+ DL +QL YAA D + LH + Sbjct: 228 GMSLKKMVDDWAGVKIVKTETMSCWTVPDLRHDQLHYAAMDAIALHYI 275 >gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894] Length = 625 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 51 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 110 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 111 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 168 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 169 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 216 >gi|312076359|ref|XP_003140825.1| 3'-5' exonuclease [Loa loa] gi|307764011|gb|EFO23245.1| 3'-5' exonuclease [Loa loa] Length = 596 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 47/126 (37%), Gaps = 16/126 (12%) Query: 39 LCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 L ++ L+ V + + + +L EK K+ H + +L + + + + Sbjct: 362 LSLIVLATTTQIVVFDVVHSDTILLESGVKEILESEKIIKVIHDAKRVATLLAHRYAINL 421 Query: 98 RPVFCTKIASRLT------RTYTNQH--GLKDNLKELLGINI-------SKAQQSSDWSA 142 R +F T++A + + T+ H ++ + +I K S W Sbjct: 422 RKIFDTQVAHAILQHEKFGKALTDMHTVSFRNLQRIYYPQSIMMSDTTPRKLSHSPSWGL 481 Query: 143 DDLSDE 148 ++++ Sbjct: 482 RPITED 487 >gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210] Length = 622 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 48 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAKLTPWLEDA 107 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 108 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 165 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 166 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 213 >gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1] gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1] Length = 765 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 15/120 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNLVG-MLVD 72 +DTET GL D++ V L + + Q + ++ Sbjct: 80 GLDTETTGLNVVDDKIAGVNLYTPGEKGIYVPLNHVSYMTGAKLKDQLPLDVVKKYIMQL 139 Query: 73 EKREKI-FHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 E K+ F FD+ VL++ G+ ++ + T++A+ L HGLK ++ + Sbjct: 140 EN-TKLDFSNAHFDLQVLYWQMGINNIKAYWDTQLAANLLN-ENEPHGLKYLYEKYVKKE 197 >gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902] Length = 930 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A + I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDEK 520 >gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a] gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a] Length = 923 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAKLTPWLEDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] Length = 948 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 24/173 (13%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ------------KNAPNLVGMLVD 72 +DTET + + L + + + +A L +L + Sbjct: 362 IDTETTDVNWQHAELVGLSFALQSHEAYYVPVAHVDEMGNRIEQLTREDVLAQLKPILQN 421 Query: 73 EKREKIFHYGRFDIAVLFYT---FGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 + KI + ++D +L T +AS + +HG+ D + L Sbjct: 422 PQIGKIGQHLKYDAHILANYHINLINEPSNWAMDTMLASYVINAVATRHGMDDLARHYLH 481 Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K + + L+ YA D + L F+EKL+ Sbjct: 482 TQTITFEDVAGKGAKQITFDKVPLTVA-SDYACEDADITYQLFELFSEKLKAE 533 >gi|297597576|ref|NP_001044181.2| Os01g0737600 [Oryza sativa Japonica Group] gi|57900569|dbj|BAD87021.1| hypothetical protein [Oryza sativa Japonica Group] gi|125571949|gb|EAZ13464.1| hypothetical protein OsJ_03381 [Oryza sativa Japonica Group] gi|255673665|dbj|BAF06095.2| Os01g0737600 [Oryza sativa Japonica Group] Length = 208 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 15/145 (10%) Query: 22 AIAVDTETLGLMPRR---DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +D E + ++Q+ G I +I +L L D + + Sbjct: 53 VVGLDVE-WRPATYYHGPGPVAVLQICVG-RRCLIFQILHADYVPDSLFDFLADGRFTFV 110 Query: 79 ---FHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISK 133 H D+A L G+ V V +A++ GL+ ++E++G+ K Sbjct: 111 GVGIHD---DVAKLRSHHGLEVENVVDLRYLAAQTIGKPALRSAGLQGLVREVMGVWAPK 167 Query: 134 AQ--QSSDWSADDLSDEQLQYAASD 156 + S W + +L+ EQ+ YA +D Sbjct: 168 PYHVRVSAWDSWNLTPEQVMYACAD 192 >gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13] gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13] Length = 923 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112] Length = 618 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 44 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 103 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 104 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 161 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 162 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 209 >gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177] gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] Length = 923 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e] gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e] Length = 923 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b] gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b] Length = 923 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAKLTPWLEDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668] gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668] Length = 923 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14] Length = 619 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 45 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 104 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 105 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 162 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 163 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 210 >gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9] Length = 923 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 957 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 43/197 (21%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---------------------- 56 V +AVDTET L L V +G I + Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSDLFAEPAEA 413 Query: 57 --------AAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103 A Q N L +L +KI ++D+ + GV+V V F T Sbjct: 414 ETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQVEGVAFDT 472 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157 + S + T +H + + LG + ++ + + L+ +++ QYAA D Sbjct: 473 MLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDIASQYAAEDA 531 Query: 158 VHLHALRLQFTEKLQRL 174 L +L++ Sbjct: 532 DVTMKLHQVLAPELEKA 548 >gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pakistani str. T13001] Length = 318 Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] Length = 905 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 14/131 (10%) Query: 10 DIPAE-----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 D+PA A+R + VD P + + L+ G V + Sbjct: 325 DLPAGGLGDWLASRAGRTVGVDV-AGRGTPAQGDAWGIALAAGGQGVAYDLADITPDDEQ 383 Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQHGLK 120 L L D K+ H ++ R + F T++A+ L + L Sbjct: 384 ALATWLADPTAPKVLHGA----KTAWHALAARGIGLDGVVFDTELAAYLCYPDQRGYDLG 439 Query: 121 DNLKELLGINI 131 D + LG + Sbjct: 440 DLVARHLGREL 450 >gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106] gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106] Length = 927 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 70/217 (32%), Gaps = 43/217 (19%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRI-------AAGQKN 62 E + +A DTET L PR + +V + + I + + Sbjct: 325 ETFTDKNNPVAWDTETTALEPRDAK--LVGIGCCWGSEKTEIAYIPLEHKTGNQLKKETV 382 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L K K +FD + VF T +AS + + H L + Sbjct: 383 LEALRPILESNKYPKALQNAKFDRLIFKVQGINLAGVVFDTMLASYVLNP-DDSHNLTEL 441 Query: 123 LKELLGIN-ISKAQ-QSSDWSADDLSDEQL----------QYAASDV--VHLH--ALRLQ 166 ++ L ++K+ Q S LS +Q +Y DV +L LR + Sbjct: 442 SRKYLDSGILAKSYKQLS------LSKKQTIADLDIPTAAEYCGLDVYATYLIVPKLRKE 495 Query: 167 FTE-------KLQRLGRSDLATSCCNFLMDRAELDLL 196 + L + + + R +D L Sbjct: 496 LQDFPELHKLLLDIEQPLEPVLAEMEYQGIRINVDYL 532 >gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium] Length = 557 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 30/174 (17%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQK--NA 63 + AE A+ D I+ DTET G + +V LS G+G +A + Sbjct: 362 QLVAELMAQ--DEISFDTETTG--TYAHDVELVGLSFCYKTGEGYYIPCPPSANETQALL 417 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 + + D ++ I ++D+ VL + + F T +A L + G+ Sbjct: 418 QHFKPLFDDASKKWIGQNVKYDLIVLKWYGVLLAGQFFDTMLAHYLIEPEGRR-GMDYLS 476 Query: 124 KELLGIN-------ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALR 164 + L I K + L+ ++ +YAA D L+ Sbjct: 477 AQYLQYEPVHIEELIGKK------GKNQLTMKDVELEKIKEYAAEDADITLQLK 524 >gi|303282409|ref|XP_003060496.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457967|gb|EEH55265.1| predicted protein [Micromonas pusilla CCMP1545] Length = 661 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%) Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVV----HLHALRLQ 166 SK Q SDWS LSD Q+ YAA D + L L + Sbjct: 357 SKTTQMSDWSRAPLSDAQIAYAAQDAIQSEVVLRGLHER 395 >gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] Length = 930 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 335 TTEAQFAALLDKLSQADTIGIDTETTSLDAMDASLVGISIAFQAGEAVYIPVGHSLTAAP 394 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V G+ + + +AS + ++ Sbjct: 395 EQLDLQDVLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 453 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 454 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 508 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 509 EAHLRAQMDAK 519 >gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222] gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222] Length = 318 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624] gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624] Length = 924 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 27/181 (14%) Query: 15 CAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------- 65 AR + +A+DTET L + + S G I + +AP Sbjct: 336 WLARIDAAELVALDTETTSLDEMVAEIVGISFSVTPGEAAYIPLMHDYPDAPAQLPRDEV 395 Query: 66 ---LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKD 121 L G L + ++K+ + ++D V G+ V+ V T + S + + HGL Sbjct: 396 LAKLKGWLENPAKKKLGQHVKYDRHVFANH-GIEVQGYVHDTMLQSYVLEVHKP-HGLAS 453 Query: 122 NLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172 + LG K D A + Q+ +Y+ D + +L+ Sbjct: 454 LAERHLGR---KGINYEDLCGKGAKQIPFSQVSIDKAAEYSCEDSDQTLDVHRTLWPRLE 510 Query: 173 R 173 + Sbjct: 511 K 511 >gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305] gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305] Length = 950 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 34/140 (24%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--------AGQKNAPN--------- 65 IA+DTET L R L + L+ G I +A AGQ + + Sbjct: 354 IALDTETDSLDSMRANLVGISLALASGEACYIPLAHKTLVTTSAGQGDLFSSEMETVGYE 413 Query: 66 --------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 L +L + + +KI ++D+ V G+ V+ V F T + S Sbjct: 414 LAKNQLNLTACLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQGVAFDTMLESYTL 472 Query: 111 RTYTNQHGLKDNLKELLGIN 130 + T +H + D LG Sbjct: 473 NS-TGRHNMDDLSDRYLGHK 491 >gi|170120055|ref|XP_001891097.1| predicted protein [Laccaria bicolor S238N-H82] gi|164633705|gb|EDQ98252.1| predicted protein [Laccaria bicolor S238N-H82] Length = 957 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 34/161 (21%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78 + +DTE D ++ G+ V I +++ N + L + + K+ Sbjct: 735 VVGLDTE-------WD------IAYGNE-VWIFQLSEHIANGSFPAQLSTFLANSQILKV 780 Query: 79 FHYGRFDIAVLFYT--------FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D+ L G+ + + A + L D + L Sbjct: 781 RRNVLLDLKNLQEDSESSTPFVGGIDLGRL-----AKEKNVVSDARASLGDLCIKTLSCI 835 Query: 131 ISKAQQ---SSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + K S DWS L+DEQ+QYAA D + + T Sbjct: 836 LPKDLNIRISPDWSG-PLTDEQIQYAALDAWASLKIYEKLT 875 >gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] Length = 889 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 63/177 (35%), Gaps = 19/177 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 AR +AV E R D +V L+ + + I + + L +L Sbjct: 314 ARAHSTLAVLVEGDLRPTRGDVTRLV-LASDNEALVIDPVELSPQQEEALGEVLA-TALS 371 Query: 77 KIFHYGRFDIAVL----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 I H + L + GV F T +A+ L H L+D L +LG+ I Sbjct: 372 LIVHDAKGARHALSSRGWTLGGVE----FDTMLAAYLAHPDQRSHKLEDVLSRVLGVVIE 427 Query: 133 KAQQSS-------DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + S D A S Q++ A HLH L +L+ + L T Sbjct: 428 EEEGDSEALFDLGDMGAGP-SAAQVR-AGKLAAHLHPLASTLRSRLEESSEAALLTD 482 >gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176] gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] Length = 879 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 22/197 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75 IA DTET GL + ++ + + + + + +K Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAI 372 Query: 76 EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E IF H ++D ++ F + + T I + L + + + + D L Sbjct: 373 EAIFNHFVIGHNLKYDFKIIQNNFDLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431 Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + K + ++++ +L +YAA D L F + L+ +LA Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLE-TPLLELAK 486 Query: 182 SC-CNFLMDRAELDLLG 197 +C +F+ ++ G Sbjct: 487 NCEFDFIKIIMMMEENG 503 >gi|115534501|ref|NP_502882.2| hypothetical protein Y105C5A.14 [Caenorhabditis elegans] Length = 318 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 E+ GI ++K + SDW+ + L +Q+ YA D + LH + E ++ SD Sbjct: 212 EVTGIVLNKEETLSDWAREVLRIDQIHYACMDAIILHHIYD---ENIEGETMSDW 263 >gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] Length = 876 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 302 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 361 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 362 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 419 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 420 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 467 >gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG] gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG] Length = 608 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 13/140 (9%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58 + HE D+ + + +DTET GL +D + ++Q ++ + Sbjct: 16 NVVEHEDDLDGFESFIRSNLRILGLDTETTGLNIYQDAFGIRLIQFGNP-WESWVLPVER 74 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112 G V L +R + H FD+ V+ GV + ++ TKI S L R Sbjct: 75 GGVFVGAAVTALQKVQRF-VIHNAAFDLQVIERMLGVPMEQMWPKVEDTKIYSHLVDPRA 133 Query: 113 YTNQHGLKDNLKELLGINIS 132 Y G L+EL I Sbjct: 134 YKEG-GTGHKLEELTKFYID 152 >gi|195327281|ref|XP_002030350.1| GM25386 [Drosophila sechellia] gi|194119293|gb|EDW41336.1| GM25386 [Drosophila sechellia] Length = 267 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 5/129 (3%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 ++ G+GT I I A L +L ++ K+ HY L + + + +F T Sbjct: 83 VATGNGT-YIFDIKALGLIFLELAKILEADQPRKVIHYSHRIADHLLHRHRISLGGIFDT 141 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKA----QQSSDWSADDLSDEQLQYAASDVVH 159 +A L + L + + + G+ + K + +++A L+ Q++Y A V Sbjct: 142 FVALCLISETRIPYTLPEAISLVFGLPMEKVTKACESQRNFTARPLTHSQMRYLAKMVQL 201 Query: 160 LHALRLQFT 168 H + + Sbjct: 202 QHIMHDRLN 210 >gi|301620462|ref|XP_002939597.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 3'-5' domain-containing protein 1-like [Xenopus (Silurana) tropicalis] Length = 490 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 28/159 (17%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRF--DIAVLFYTFG 94 +L +Q + + G K N L +L D K+ H R+ DI L Y +G Sbjct: 176 KLSWLQFATKSRVYLFDVLVLGSKVFKNGLQMVLEDTGILKVIHDCRWLGDI--LSYQYG 233 Query: 95 VRVRPVFCTKIA-----SRLTRTYTNQHGLKDNLKELLGINIS-----------KA---Q 135 + + VF T++ S T + H ++ +E L ++S K + Sbjct: 234 IILNNVFDTQVGDVYLFSMETGGFLP-HRIRTL-EECLIHHLSMLPSRVSFLAHKQPLTE 291 Query: 136 QSSD-WSADDLSDEQLQYAASDVVHLHALRLQ-FTEKLQ 172 + D W + L+ + +V+HL LR L Sbjct: 292 EYDDIWFDRPMDPTLLKLLSLEVIHLLPLRSAMLDAMLA 330 >gi|170940093|emb|CAP65319.1| unnamed protein product [Podospora anserina S mat+] Length = 274 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 42/207 (20%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPN---------LVGML 70 ++ +D E + L + I+Q+ +I + + A + +L Sbjct: 53 PSLYIDLEGVYLSRH-GTISILQIYVLPRRRAYLIDVHILGEKAFSTLSSTTGRTFKDIL 111 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--GLKDNLKELLG 128 E K+F R D LF F +R+ V ++ TRTY+ + GL ++ Sbjct: 112 ESETIPKVFFDVRNDSDALFSHFQIRLAGVQDLQLMELATRTYSRRVVCGLARCIER--D 169 Query: 129 INISKAQQSSDW----------------------SADDLSDEQLQYAASDVVHLHALRLQ 166 ++S + +SS W + L++E +Y DV L L Sbjct: 170 ASLSTSVRSS-WMTTKERGTRLFAPERGGSYQVFNERPLNEEIRRYCVQDVHLLPRLWAH 228 Query: 167 FTEKLQRLGRSDLATSCCNFLMDRAEL 193 + KL + D DR L Sbjct: 229 YYGKLTK----DWERRVLEASRDRVAL 251 >gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] Length = 903 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 23/150 (15%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122 L +L D+K K H ++ + L + G V+ + F T IA+ L +KD Sbjct: 385 SGLAALLGDKKMSKTAHNAKY-LMNLLLSAGQEVKGLDFDTMIAAHLLGE--KNLAIKDL 441 Query: 123 LKELLGINISKAQ-------QSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKLQRL 174 + E GI I+ + + + ++ LS+ QL A+D + L+ F +L Sbjct: 442 VFEHFGIEIADIENILTRNGKKTIFNEVQLSEAAQL---AAD--YTFRLKGIFAAQLAET 496 Query: 175 GRSDL-ATSCCNFLMDRAELDLLGWENVDI 203 DL A L LLG E + I Sbjct: 497 RLMDLFARVEMPLLPI-----LLGMERIGI 521 >gi|289762852|ref|ZP_06522230.1| conserved alanine rich protein [Mycobacterium tuberculosis GM 1503] gi|289710358|gb|EFD74374.1| conserved alanine rich protein [Mycobacterium tuberculosis GM 1503] Length = 259 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 17/38 (44%) Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 + YAA DV L LR + L G++D A L Sbjct: 1 MNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHL 38 >gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus G9842] gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus G9842] Length = 315 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676] gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676] Length = 318 Score = 49.2 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15] gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15] Length = 318 Score = 49.2 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper] gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper] Length = 609 Score = 49.2 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 13/140 (9%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58 + HE D+ + + +DTET GL +D + ++Q ++ + Sbjct: 16 NVVEHEDDLDGFESFIRSNLRILGLDTETTGLNIYQDDFGIRLIQFGNP-WESWVLPVER 74 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112 G L +R + H FD+ V+ T GV + ++ TKI S L R Sbjct: 75 GGVFVGAAATALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133 Query: 113 YTNQHGLKDNLKELLGINIS 132 Y G L+EL I Sbjct: 134 YKEG-GTGHKLEELTKFYID 152 >gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 315 Score = 49.2 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2] gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876] gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876] gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2] Length = 318 Score = 49.2 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264] gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24] gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis BMB171] gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus B4264] gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24] gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis BMB171] Length = 315 Score = 49.2 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] Length = 901 Score = 49.2 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 1/91 (1%) Query: 42 VQLSPGDGTVDIIRIAAG-QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 V L+ +G + + + + L L DE K+ H + + L V Sbjct: 355 VALAAPNGEGAYLDVTTLTEDDERALGEWLADENIHKVGHSLKKALHGLRSRGWRLAGLV 414 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T++A+ L R L D + LG + Sbjct: 415 MDTELAAYLVRPGQRSFKLDDLVLRYLGKEL 445 >gi|159486097|ref|XP_001701080.1| hypothetical protein CHLREDRAFT_153315 [Chlamydomonas reinhardtii] gi|158271974|gb|EDO97782.1| predicted protein [Chlamydomonas reinhardtii] Length = 537 Score = 49.2 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 43/176 (24%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------------------- 57 + DTE +G D+L +VQL G V ++++ Sbjct: 213 KVLGFDTEFVG-----DQLAVVQLCAGPH-VLLVQVPSCRQPASEQQQQQTKKKAQGGKE 266 Query: 58 ----AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT- 112 A P L +L D K D +++ FGV++R +A R Sbjct: 267 QPWRAPFTLLPELKALLCDPGIPKAAAEAWQDALMVYMGFGVKLRGGLDLTVAVPPNRAD 326 Query: 113 ---YTNQHGLKDNLKELLGI--NISKAQQ--SSDWSADDLSDEQLQYAASD--VVH 159 N+ GL D + +++K + S W + L D+Q++YAA D V + Sbjct: 327 RQRGRNKLGLFDIFRTFFSAADHVAKDETIDHSKWRSSCLDDQQMRYAALDAFVSY 382 >gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei] Length = 615 Score = 49.2 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 41 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 100 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 101 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 158 Query: 133 K-------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 159 KYEDVAGQGAQQIGFDEVPLAQA-FEYAAEDADITLQLHHALYPQIARE 206 >gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al Hakam] gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus NVH0597-99] gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB108] gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB102] gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42] gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1] gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al Hakam] gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB108] gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus NVH0597-99] gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus 03BB102] gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1] gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42] Length = 315 Score = 49.2 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 + ++ + H L+ K +LGI +S Sbjct: 124 LLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1] Length = 912 Score = 49.2 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 1/92 (1%) Query: 42 VQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 + L+ G A + + + D +R K+ H + + V Sbjct: 368 IALAAASGPAVCFDPSAVDEPDERAFADWIADPERPKVMHDAKRVMRVFDEQGWAVAGAA 427 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 T +A+ L + L E LG +S Sbjct: 428 MDTALAAYLVKPGRRSFALDALSVEYLGRELS 459 >gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29] gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29] Length = 318 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAGQK--------- 61 +D + +D ET G P D++ +Q++ D V + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGI 67 Query: 62 ------NAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR--VRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|170085027|ref|XP_001873737.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651289|gb|EDR15529.1| predicted protein [Laccaria bicolor S238N-H82] Length = 908 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 34/161 (21%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78 + +DTE D ++ G+ V I +++ N + L + + K+ Sbjct: 553 VVGLDTE-------WD------IAYGNE-VWIFQLSEHIANGSFPAQLSTFLANSQILKV 598 Query: 79 FHYGRFDIAVLFYT--------FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D+ L G+ + + A + L D + L Sbjct: 599 RRNVLLDLKNLQEDSESSTPFVGGIDLGRL-----AKEKNVVSDARASLGDLCIKTLSCI 653 Query: 131 ISKAQQ---SSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + K S DWS L+DEQ+QYAA D + + T Sbjct: 654 LPKDLNIRISPDWSG-PLTDEQIQYAALDAWASLKIYEKLT 693 >gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18] gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18] Length = 318 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAGQK--------- 61 +D + +D ET G P D++ +Q++ D V + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGI 67 Query: 62 ------NAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR--VRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3] gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3] Length = 315 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAGQK--------- 61 +D + +D ET G P D++ +Q++ D V + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGI 64 Query: 62 ------NAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR--VRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28] gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28] Length = 315 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAGQK--------- 61 +D + +D ET G P D++ +Q++ D V + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGI 64 Query: 62 ------NAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR--VRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|330952602|gb|EGH52862.1| ribonuclease D [Pseudomonas syringae Cit 7] Length = 59 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%) Query: 8 EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR 55 + + CA + + +A+DTE + + ++Q+ G I Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDP 59 >gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202] gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202] Length = 950 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 34/140 (24%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------------- 56 IA+DTET L L V L+ +G I + Sbjct: 354 IALDTETDSLDSMSANLVGVSLALANGEACYIPLVHKTLVTTSAEQGDLFANEMETVGYE 413 Query: 57 -AAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110 A Q N L +L + + +KI ++D+ V G+ V+ V F T + S Sbjct: 414 LAKNQLNLTVCLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQGVAFDTMLESYTL 472 Query: 111 RTYTNQHGLKDNLKELLGIN 130 + T +H + D + LG Sbjct: 473 NS-TGRHNMDDLAERYLGHK 491 >gi|195589974|ref|XP_002084724.1| GD14419 [Drosophila simulans] gi|194196733|gb|EDX10309.1| GD14419 [Drosophila simulans] Length = 267 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 5/129 (3%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 ++ G+GT I I A L +L ++ K+ HY L + + + +F T Sbjct: 83 VATGNGT-YIFDIKALGSIFLELAKILEADQPRKVIHYSHRIADHLLHRHRISLGGIFDT 141 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKA----QQSSDWSADDLSDEQLQYAASDVVH 159 +A L + L + + + G+ + K + +++A L+ Q++Y A V Sbjct: 142 FVALCLISETRIPYTLPEAISLVFGLPMEKVTEACESQRNFTARPLTHSQMRYLAKMVQL 201 Query: 160 LHALRLQFT 168 H + + Sbjct: 202 QHIMHDRLN 210 >gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley] gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley] Length = 608 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 13/140 (9%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58 + HE D+ + + +DTET GL +D + ++Q ++ + Sbjct: 16 NVVEHEDDLDGFESFIRSNLRILGLDTETTGLNIYQDDFGIRLIQFGNP-WESWVLPVER 74 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112 G V L +R + H FD+ V+ T GV + ++ TKI S L R Sbjct: 75 GGAFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133 Query: 113 YTNQHGLKDNLKELLGINIS 132 Y G L+EL I Sbjct: 134 YKEG-GTGHKLEELTKFYID 152 >gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442] gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442] Length = 930 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V + + + +AS + ++ Sbjct: 396 EQLDLQDVLGRLKPHLENPTLKKIGQNLKYDQHVFANY-DIALNGIAGDAMLASYIIESH 454 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ YAA D L Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 510 EAHLRAQMDEK 520 >gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5] gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5] Length = 608 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 13/140 (9%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58 + HE D+ + + +DTET GL +D + ++Q ++ + Sbjct: 16 NVVEHEDDLDGFESFIRSNLRILGLDTETTGLNIYQDDFGIRLIQFGNP-WESWVLPVER 74 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112 G V L +R + H FD+ V+ T GV + ++ TKI S L R Sbjct: 75 GGAFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133 Query: 113 YTNQHGLKDNLKELLGINIS 132 Y G L+EL I Sbjct: 134 YKEG-GTGHKLEELTKFYID 152 >gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH1134] gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185] gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH1134] gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185] Length = 315 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|156059756|ref|XP_001595801.1| hypothetical protein SS1G_03891 [Sclerotinia sclerotiorum 1980] gi|154701677|gb|EDO01416.1| hypothetical protein SS1G_03891 [Sclerotinia sclerotiorum 1980 UF-70] Length = 268 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 21/139 (15%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--HGLK--- 120 L +L + K+ R D L+ FG+++ V ++ TR Y+ GL Sbjct: 101 LKSILESQLIPKVIFDVRNDSDALYSHFGIKLGGVIDLQLMELATRFYSRDFLCGLGKCM 160 Query: 121 --DNLK--ELLGIN------------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 D ++ E L + K ++ L + Y DV L L Sbjct: 161 ENDLVQTPEELKVRGAIKQRGIEIFAPEKGGSYEVFNDRPLDPAIVDYCIQDVQLLPELW 220 Query: 165 LQFTEKLQRLGRSDLATSC 183 + KL +L + A Sbjct: 221 EVYNAKLSKLHKRWAAKIE 239 >gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15] Length = 959 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 26/183 (14%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---------------V 67 + +DTET + P + +L + LS G I +A + L Sbjct: 371 VCLDTETTSIDPMQAQLVGLSLSVEPGQACYIPVAHRGPDVSGLEAAGQLAREAVLARMK 430 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 L D R+K+ + ++D V G+ +R + T + S + ++ N HG+ + + Sbjct: 431 PWLEDASRKKVGQHLKYDAHVFANH-GIALRGIAHDTMLQSYVLASHRN-HGMDALAERV 488 Query: 127 LGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L + K + L +YAA D L K+ + Sbjct: 489 LHLKTITYEEVCGKGASQIGFDEVPLDRA-TEYAAEDADITLRLHRAMYPKVAEDDKLRY 547 Query: 180 ATS 182 Sbjct: 548 VYE 550 >gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603] gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603] Length = 318 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNNVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 315 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196] gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196] Length = 318 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNNVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM 12442] gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM 12442] Length = 315 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 40/147 (27%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDII------------------ 54 D + +D ET G P DR+ +Q++ D V + Sbjct: 9 DYVVIDFETTGFNPYNDRI--IQVAAVRYRNHELADQFVSFVNPERFIPNRITSLTGITN 66 Query: 55 ----RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRPV-FCTKI 105 Q+ P + L ++ + H FD+ L + + + T Sbjct: 67 YRVSDAPTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNAKMLRLPEPKNIVIDTVF 124 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 125 LAKRYMKHARNHKLETL-KRMLGIRLS 150 >gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621] gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621] Length = 318 Score = 48.8 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNNVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] Length = 976 Score = 48.8 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 35/214 (16%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------QKN 62 + + +++DTET L P L + L G+ T D+ I G ++ Sbjct: 376 LEKTNEIVSLDTETNSLNPIDAELVGIGLCLGEETDDLFYIPLGHQTKKETTNQLSIEEV 435 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121 + + D K+EK +FD + F G+ ++ V F T +A L +HGL + Sbjct: 436 FSKIRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTFDTLLADYLLNNQ-EKHGLSE 493 Query: 122 NLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK-- 170 L G + +K D DE Y DV + F E+ Sbjct: 494 ISFRLFGFKPPSFKETVGKNKDFSFVD------IDEASVYCGYDVFLTFKIVKIFKERFS 547 Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLGWENVDI 203 +++ L +++++ G +DI Sbjct: 548 MEKDELIKLFEEIELPLEPVLSQMEMNGIT-IDI 580 >gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 318 Score = 48.8 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|156100329|ref|XP_001615892.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax SaI-1] gi|148804766|gb|EDL46165.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax] Length = 1114 Score = 48.8 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 50/154 (32%), Gaps = 13/154 (8%) Query: 34 PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 R ++ + + + + + L + D KI + + I V+ F Sbjct: 495 TYRGFTSLILVGTEECDYILDALHIFE-QMHALNEVTTDPNILKIVYKSKSIIPVMQRDF 553 Query: 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 + + + S ++ L + ++++ A Q + LS + +Q Sbjct: 554 SIYFVNIIDISVCSDFLNV---RNSLAFLVHNYFHVSVNSAGQGFNALTRPLSTDAVQNL 610 Query: 154 ASDVVHLHALRLQFTEKL---------QRLGRSD 178 +L+ L L +R G+++ Sbjct: 611 RMPFHYLYYLFEYVKTDLYFNYIFAHYRREGQTE 644 >gi|327198385|ref|YP_004306959.1| DNA polymerase I [Streptococcus phage Dp-1] gi|314912687|gb|ADT64078.1| DNA polymerase I [Streptococcus phage Dp-1] Length = 779 Score = 48.8 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 19/127 (14%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------AGQKNAPNLVGML---V 71 +D ET GL D L V L + Q + + ML V Sbjct: 88 IDVETDGLDTIHDELAGVCLYSPSQKGIYAPVNHVSNMTKMRIKNQISPEFMKKMLQRIV 147 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN----LKEL 126 D I+H +FD+ +++ GV++ P + T +A+ L H LK ++ Sbjct: 148 DSGIPVIYHNSKFDMKSIYWRLGVKMNEPAWDTYLAAMLLN-ENESHSLKSLHSKYVRNE 206 Query: 127 LGINISK 133 ++K Sbjct: 207 ENAEVAK 213 >gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708] gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708] Length = 982 Score = 48.8 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 41/122 (33%), Gaps = 14/122 (11%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRI-------AAGQKNAPNLVGM 69 +A DTET L PR +V + G I + L + Sbjct: 385 KPVAWDTETTALEPRDA--ALVGIGCCWGTGSDEAAYIPVGHKIGHNLQLDLVVSALRPI 442 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L + K F +FD + V VF T +AS L T H L D LG+ Sbjct: 443 LENANYPKTFQNAKFDRLIFKCQGINLVGVVFDTMLASYLINPDTT-HNLSDLSLRNLGL 501 Query: 130 NI 131 + Sbjct: 502 QL 503 >gi|226502476|ref|NP_001149685.1| Werner syndrome ATP-dependent helicase [Zea mays] gi|195629436|gb|ACG36359.1| Werner syndrome ATP-dependent helicase [Zea mays] Length = 204 Score = 48.8 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 5/135 (3%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 + ++Q+ D + +I L L D + + D+A L + + V Sbjct: 68 VAVLQICV-DHRCLVFQILQADYIPDALSRFLADRRFTFVGVGISGDVAKLRAGYRLGVA 126 Query: 99 PVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAA 154 ++ + L + GL+ + E++G+ + K + S W LS++QL+YA Sbjct: 127 SAVDLRVLAADTLEVPELLRAGLQTLVWEVMGVQMVKPHHVRVSAWDTPTLSEDQLKYAC 186 Query: 155 SDVVHLHALRLQFTE 169 +D + + E Sbjct: 187 ADAFASFEVGRRLYE 201 >gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273] gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272] gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272] gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273] Length = 315 Score = 48.8 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAGQK--------- 61 +D + +D ET G P D++ +Q++ D V + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPERPIPNRITSLTGI 64 Query: 62 ------NAPNLVGML------VDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP + +L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPFFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY] gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY] Length = 922 Score = 48.8 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 65/199 (32%), Gaps = 27/199 (13%) Query: 13 AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65 AR A+DTET L R + V S G I +A +AP Sbjct: 336 DGWLARLKAAPLAALDTETTSLDELRAEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLA 395 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGL 119 L L D K+ + ++D V G++VR T + S + + HGL Sbjct: 396 EVLERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYAHDTMLQSYVLEVHKP-HGL 453 Query: 120 KDNLKELLGIN-IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + G IS K + ++ + Y+ D + +LQ Sbjct: 454 TSLAERHTGRTGISYEDLCGKGAKQIPFAQVPVDKA-AAYSCEDSDQTLDVHRVLWPQLQ 512 Query: 173 R----LGRSDLATSCCNFL 187 G +L +C L Sbjct: 513 ADDKLRGIYELEMACSETL 531 >gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407] gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407] gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 324 Score = 48.8 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 16 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 73 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 74 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPTNKVIDTV 132 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 133 FLAKKYMKHAPNHKLETL-KRMLGIRLS 159 >gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048] gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048] Length = 318 Score = 48.8 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPELSIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNNVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803] gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803] Length = 315 Score = 48.8 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRP-VFCTK 104 +AP L + + H FD+ L + + V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLLEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar chinensis CT-43] Length = 315 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPTNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] Length = 997 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 38/132 (28%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLK 124 L +L D+ KI ++D+ ++ G+ V P T + S + T HG+ Sbjct: 470 LKPLLEDKSVLKIAQNLKYDLVIMSRY-GIDVAPFDDTMLISYVLDAGTPHGHGMDALAD 528 Query: 125 ELLG---------------------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + LG ++I KA +AA D L Sbjct: 529 KWLGHTPLQLKDVIGSGKNSVGFDQVDIDKAT---------------AHAAEDADVTLRL 573 Query: 164 RLQFTEKLQRLG 175 L +L G Sbjct: 574 WLVLKPRLAATG 585 >gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925] gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925] Length = 881 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 23/142 (16%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRVRPV-FCTKIASRLTRTYTNQHG 118 + + DE +KI H DI V+ + + + F TKIA+ L + + + Sbjct: 377 LELIKKLFEDENIKKISH----DIKNIYVILRKYDIDAKNFSFDTKIAAYLLQPSKSDYI 432 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 L+D + E L INI ++ + S + + + + ++++ + Sbjct: 433 LRDIILEKLSINIHESDEESK--------------IKETYCIKEIYEKLQKEIKSANMEE 478 Query: 179 L-ATSCCNFLMDRAELDLLGWE 199 L + A ++ G++ Sbjct: 479 LFYNVELPLVKVLASMECEGFK 500 >gi|320592146|gb|EFX04585.1| 3'-5' exonuclease [Grosmannia clavigera kw1407] Length = 340 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 48/210 (22%) Query: 10 DIPAECAA---------RYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAG 59 D PA AA ++ +D E + L R + I+Q+ ++ + Sbjct: 117 DTPAAVAAFVDMLYALPTTPPSLYIDVEGVNL-SRVGTVSIIQVFVLPKSRAYLLDVHTL 175 Query: 60 QKNAPN--------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111 + A + +L K+ R D LF F +R+ + ++ TR Sbjct: 176 KDKAFSTPGTRGRTFQDLLESAAIPKVIFDVRNDSDALFGRFRIRLAGIQDLQLMELATR 235 Query: 112 TY--TNQHGLKDNLKELLGIN-ISKAQQSSDWSA----------------------DDLS 146 +Y GL +++ ++ K +DW A LS Sbjct: 236 SYDKGRVKGLAKCIEKDAQLSPADK----ADWKATKEKGVRLFLPGQGRRRHAFNERPLS 291 Query: 147 DEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 ++ +Y DV L L + +L R R Sbjct: 292 EDVRRYCIQDVQFLPQLWEYYNSRLTRAWR 321 >gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 315 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4] gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4] Length = 318 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHATNHKLETL-KRMLGIRLS 153 >gi|171692849|ref|XP_001911349.1| hypothetical protein [Podospora anserina S mat+] gi|170946373|emb|CAP73174.1| unnamed protein product [Podospora anserina S mat+] Length = 575 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 24/153 (15%) Query: 39 LCIVQLSPGDGTVD---IIRIAAGQKNAPNLVGMLVDEKREK----IFHYGRFDIAVLFY 91 + ++Q++ + + P L +L D K K + + Sbjct: 225 VSLIQIASPTRIALFHVALYPKSKPLATPLLKKILEDPKITKVGVWVMGDASK----VQR 280 Query: 92 TFGVRVRPVFCTKIASRLTRT-YTNQHGL--KDNL------KELLGINISKAQ--QSSDW 140 + R +F +L + + +H L K + +E+L + + K ++S+W Sbjct: 281 YLKITPRGLFELSHLYKLVKYCESGEHSLINKKLVSLGKQAEEVLKLPLYKELDVRTSNW 340 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFT-EKLQ 172 L +Q+ Y+ASD + ++LQ Sbjct: 341 LQ-SLRLDQIIYSASDAYAGVQIYSMLNHQRLQ 372 >gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 985 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 64/186 (34%), Gaps = 33/186 (17%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------------- 68 +A+DTET L P + L + G+ DI I G + L Sbjct: 386 PVAIDTETTSLNPFKAELVGLGFCWGENLDDIAYIPLGHNSQGELKDQSIRQQLPIQNVI 445 Query: 69 -----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDN 122 L K+ ++D + + G+ + V T +A L+ + TN+H L + Sbjct: 446 QSLTPWLSSSYHPKVLQNAKYDRLIFLHN-GIPLEGVVMDTLLADYLSNS-TNKHSLDEI 503 Query: 123 LKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 K G + K + D D S Y DV L + +LQ G Sbjct: 504 AKREYGFTPINFKELVGKGETFKDVDIDTAS----IYCGMDVYLTRKLSFRIRSQLQTKG 559 Query: 176 RSDLAT 181 S+L Sbjct: 560 -SELIQ 564 >gi|223986450|ref|ZP_03636454.1| hypothetical protein HOLDEFILI_03766 [Holdemania filiformis DSM 12042] gi|223961602|gb|EEF66110.1| hypothetical protein HOLDEFILI_03766 [Holdemania filiformis DSM 12042] Length = 171 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 24/145 (16%) Query: 10 DIPA-ECAARYVDAIAVDTETLGLMPRR--DRLCI---------VQLSPGDGTVDIIRIA 57 D+P+ + + V +A D ET R + + V S +G + + Sbjct: 9 DLPSIKRYLQGVTPVAFDFETTSDAAYRTEPKAALDAHKLHIVSVSFSTTEGDASNVPLL 68 Query: 58 --------AGQKNAPNLV-GMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIAS 107 + L + + KI H F+ A+ Y + V+ P + T AS Sbjct: 69 HRIGENCEKQDELWTFLKTEVFENPNIVKIAHNLSFE-AMFLYAKNIIVQMPCYDTIAAS 127 Query: 108 RL-TRTYTNQHGLKDNLKELLGINI 131 +L ++ GL + +LL + Sbjct: 128 QLPLKSKCEFRGLHASCLKLLATTM 152 >gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 937 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 62/178 (34%), Gaps = 21/178 (11%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 D +A+DTET L R R+ + S I +A AP+ L Sbjct: 357 EAADLVALDTETDSLDGMRARIVGLSFSVQPYEACYIPLAHTYPGAPDQLPLDEVLAALK 416 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 L D R K+ ++D V G+ VR V T + S + + H L+ Sbjct: 417 SWLEDGSRAKLGQNVKYDTHVFANH-GIAVRGYVHDTLLQSYVLEAHKP-HSLESLASRH 474 Query: 127 LG-INIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L +S K Q ++ +L+ +Y+ D + +L+ R Sbjct: 475 LDRKGLSYEDVAGKGAQQIPFAQVELTRA-TEYSGEDSDMTLDVHRVLWPQLEAAPRL 531 >gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W] gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W] Length = 315 Score = 48.5 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRP-VFCTK 104 +AP L + + H FD+ L + + V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLLEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 315 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822] gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822] Length = 966 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 33/178 (18%) Query: 20 VDAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNL 66 + DTET L P L C G + D+ I L Sbjct: 375 HQPVTWDTETTSLDPIEATLVGIGC----CWGHQSTDVAYIPLNHTEGEQLPQTEVLAAL 430 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L ++ K F +FD VL + VF T +AS + R + H L D Sbjct: 431 RSILESDQYPKAFQNTKFDRIVLLHQGIQLAGVVFDTMLASYVLRPE-DSHKLSDLCHRY 489 Query: 127 L---------GINISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL 174 L + I K Q ++ L ++ Y D L + +L++ Sbjct: 490 LENIKSLNYKDLEIPKTQTIAN-----LDISRVAHYCGMDAYATFKLVPKLLAELEKA 542 >gi|42766600|gb|AAS45430.1| At4g13870 [Arabidopsis thaliana] Length = 141 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 8/131 (6%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 ++ VQ+ D++ I L ++ D K+ D LF+ +GV + Sbjct: 5 KVATVQICVDSNYCDVMHIFHSGIPQS-LQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSI 63 Query: 98 RPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAA 154 + V + +A++ + GL + L+ + K + +W LS +QLQYAA Sbjct: 64 KDVEDLSDLANQKIGG-DKKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYAA 122 Query: 155 SDV---VHLHA 162 +D HL+ Sbjct: 123 TDAYASWHLYK 133 >gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] Length = 920 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 1/92 (1%) Query: 42 VQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 + L+ G G + + + + D R K+ H + + V Sbjct: 376 IALATGSGPAAFFDPSQLDEADERTFAEWIADPDRPKVLHNAKGIMRVFAEHGWSVAGVT 435 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 T +A+ L + L E LG +S Sbjct: 436 MDTALAAYLVKPGRRSFELDALSVEYLGRELS 467 >gi|189193621|ref|XP_001933149.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978713|gb|EDU45339.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 763 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 40/145 (27%) Query: 39 LCIVQLSPGDGTVD----IIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTF 93 + +VQL+ + + +K P L +L K+ + D L Sbjct: 229 VSLVQLACENRIALFHLALFPGKKVEKLMPPSLKAVLESPNIYKVGVAVKGDFTRLEKYL 288 Query: 94 GVRVRPVF--------------C-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS- 137 G++ + VF +KI+ +L GL + + L + + K +Q Sbjct: 289 GIQPQGVFELSRLHNLVEWHDVDPSKISKKL-------VGLAAQVHQHLQLPLYKGEQLD 341 Query: 138 -----------SDWSADDLSDEQLQ 151 SDWS LS EQ+ Sbjct: 342 DDPEGTASVRESDWSL-PLSLEQIH 365 >gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579] gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] Length = 315 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHATNHKLETL-KRMLGIRLS 150 >gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 952 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 35/141 (24%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------------ 64 IAVDTET L L + + +G I + QK P Sbjct: 355 IAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQKAQPQQADMFGDEERSESPSSD 414 Query: 65 --------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 L +L++ + +KI ++D+ + G+ ++ V F T I S Sbjct: 415 ELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAFDTMIES-Y 472 Query: 110 TRTYTNQHGLKDNLKELLGIN 130 T+ T +H + D LG Sbjct: 473 TQNSTGRHNMDDLAARYLGHK 493 >gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 952 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 35/141 (24%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------------ 64 IAVDTET L L + + +G I + QK P Sbjct: 355 IAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQKAQPQQADMFGDEERSESPSSD 414 Query: 65 --------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 L +L++ + +KI ++D+ + G+ ++ V F T I S Sbjct: 415 ELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAFDTMIES-Y 472 Query: 110 TRTYTNQHGLKDNLKELLGIN 130 T+ T +H + D LG Sbjct: 473 TQNSTGRHNMDDLAARYLGHK 493 >gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215] Length = 923 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R ++ + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLGDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] Length = 952 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 35/141 (24%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------------ 64 IAVDTET L L + + +G I + QK P Sbjct: 355 IAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQKAQPQQADMFGDEERSESPSSD 414 Query: 65 --------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 L +L++ + +KI ++D+ + G+ ++ V F T I S Sbjct: 415 ELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAFDTMIES-Y 472 Query: 110 TRTYTNQHGLKDNLKELLGIN 130 T+ T +H + D LG Sbjct: 473 TQNSTGRHNMDDLAARYLGHK 493 >gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121] gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121] Length = 925 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 18/174 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + A DTET L L +S G I +A + AP + Sbjct: 345 QQAPLFAFDTETTSLNYMAAELVGFSVSVEAGKAAYIPVAHDYEGAPEQLDRDWVLEQIK 404 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +L D + K+ + ++D VL + ++ + F T + S + + N+H + K+ Sbjct: 405 PVLEDASQLKVGQHLKYDANVLANY-DIELKGIEFDTMLESYIFNSTANRHDMDSLAKKF 463 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 L ++ + A + Q++ YAA D L KL++ Sbjct: 464 LSHKSVSFEEIAGKGAKQKTFNQIELEQAAFYAAEDADITFRLHQAIWAKLEKT 517 >gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201] gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201] gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 315 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|56693107|ref|YP_164694.1| hypothetical protein LP65_gp059 [Lactobacillus phage LP65] gi|54633608|gb|AAV35879.1| orf59 [Lactobacillus phage LP65] Length = 988 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 30/154 (19%) Query: 15 CAARYVDAIAVDTETLGLMPRR--DRLCIVQLSPGDGTVDIIRIAAG----------QKN 62 A I +D ET L R R+ ++ +S D +I I Q Sbjct: 192 LKAPLYKIIGIDFETNTLESWRTNARMTMMSISWKDHQGVVIPIDKTGFQPFSEEEKQDI 251 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-RVRPVFCTKIA--------------- 106 N+ + +K K+ H G+FDI +L G+ R T++ Sbjct: 252 KHNVNQIFKSDKIWKVLHNGKFDITMLKDVNGLDRSIKCIDTEVMYYVGFSQAKKVKKGL 311 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 ++ R +T+ G + L+E + K + +W Sbjct: 312 KQIARAFTDMGGYEQPLEEFKNEYLEKHYK--NW 343 >gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229] gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247] gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH] gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU] gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247] gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH] gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU] gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229] Length = 926 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R + + S G + +A + P L L D Sbjct: 352 AFDTETTSLDPMRAEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 412 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 469 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 470 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 517 >gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91] Length = 622 Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R + + S G + +A + P L L D Sbjct: 48 AFDTETTSLDPMRAEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 107 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 108 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 165 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 166 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 213 >gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar finitimus YBT-020] Length = 315 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N] gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N] Length = 695 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 51/197 (25%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDII-----RIAA 58 AE + + DTET GLMP +D + VQ++ +D + I Sbjct: 487 AEARLEDLTYVVFDTETTGLMPSQDEI--VQIAAVRIVNGRRVEAEVLDTLVNPHRPIPP 544 Query: 59 GQKNAPNLVGML--VDEKR--------------EKIFHYGRFDIAVLFYT---FGVRV-R 98 + + + H FD+ L G R Sbjct: 545 SSTEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGRRFDN 604 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 P+ T + S + ++ H L LGI I + + + A D V Sbjct: 605 PILDTVLLSAVLFGQSDVHSLDALTHR-LGITIPEEARHT--------------AIGDTV 649 Query: 159 HLHALRLQFTEKLQRLG 175 L+ LQ G Sbjct: 650 ATADAFLKLLPMLQGRG 666 >gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] Length = 923 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R + + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMRAEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98] Length = 620 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R + + S G + +A + P L L D Sbjct: 46 AFDTETTSLDPMRAEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 105 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 106 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 163 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 164 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 211 >gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305] gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305] Length = 923 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P R + + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMRAEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L+ +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1] gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1] Length = 695 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 51/197 (25%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDII-----RIAA 58 AE + + DTET GLMP +D + VQ++ +D + I Sbjct: 487 AEARLEDLTYVVFDTETTGLMPSQDEI--VQIAAVRIVNGRRVEAEVLDTLVNPHRPIPP 544 Query: 59 GQKNAPNLVGML--VDEKR--------------EKIFHYGRFDIAVLFYT---FGVRV-R 98 + + + H FD+ L G R Sbjct: 545 SSTEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGRRFDN 604 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 P+ T + S + ++ H L LGI I + + + A D V Sbjct: 605 PILDTVLLSAVLFGQSDVHSLDALTHR-LGITIPEEARHT--------------AIGDTV 649 Query: 159 HLHALRLQFTEKLQRLG 175 L+ LQ G Sbjct: 650 ATADAFLKLLPMLQGRG 666 >gi|21805698|gb|AAM76756.1| hypothetical protein [Arabidopsis thaliana] Length = 239 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 12/128 (9%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD---IAVLFYTFGVRVR 98 +QL G+ II+++ ++ L L DE + + D + + + Sbjct: 76 LQLCVGN-RCLIIQLSHCKRIPEVLRSFLEDETITFVGVWNSQDQGKLERFRHQLEIW-- 132 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAAS 155 + T + ++E LG + K S+W A LS +Q+ A+ Sbjct: 133 RLLDI---RHYLPTRLLNSSFEKIVEECLGYKGVRKDKEICXSNWGARSLSHDQIVQASD 189 Query: 156 DVVHLHAL 163 DV L Sbjct: 190 DVYVCCKL 197 >gi|302421258|ref|XP_003008459.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261351605|gb|EEY14033.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 586 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 25/150 (16%) Query: 39 LCIVQLSPGDGTVD----IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94 + ++QL+ + A AP ++ D K + D L F Sbjct: 207 VSLIQLASPSRIALFHVALFPGADDDLMAPTFRQIMEDPDVTKAGVNIKGDCTRLRNWFD 266 Query: 95 VRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKAQ--QSSDWSAD 143 V R F +L + T+ L +++ LG+ + K +SSDWS Sbjct: 267 VGTRGTFELSNLYKLVKHSTSGRVDLVNKRLVSLATQVQDCLGLPMFKGPDVRSSDWSQA 326 Query: 144 DLSDEQL---QYAASDVVHLHALRLQFTEK 170 L+ +Q+ YA L E+ Sbjct: 327 -LNMQQITCDAYAG------LQLYHVLDEQ 349 >gi|226503994|ref|NP_001150086.1| LOC100283715 [Zea mays] gi|195636594|gb|ACG37765.1| 3-5 exonuclease/ nucleic acid binding protein [Zea mays] Length = 200 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 6/151 (3%) Query: 22 AIAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + +D E + I+QL G I ++ L L D + Sbjct: 46 VVGLDVEWRPSFSRAYSKTAILQLCVG-RRCLIFQLLHADYVPNTLDEFLSDPDYTFVGV 104 Query: 81 YGRFDIAVLFYTFGVRVRPVFC-TKIASR-LTRTYTNQHGLKDNLKELLGINISKAQ--Q 136 D+ L + + V ++A++ + GL+ + ++ ++ K Q + Sbjct: 105 GVAADVERLENDYDLEVANAEDLAELAAKEMGHPDLRNAGLQGIARVVMDAHVEKPQWVR 164 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + W A LSDEQ++YA D + Sbjct: 165 TGPWDASSLSDEQIEYATIDAFVSFEVGRML 195 >gi|121711303|ref|XP_001273267.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus clavatus NRRL 1] gi|119401418|gb|EAW11841.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus clavatus NRRL 1] Length = 391 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 30/176 (17%) Query: 39 LCIVQLSPGDGTVD----IIRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDIAVLFYT 92 + ++Q++ + + + A ++ A +L +L + K+ + D L Sbjct: 167 VSLIQIANSERIALFQIALFKPAKKAEDFVAASLRKILESPEIMKVGVTIKADCTRLRKY 226 Query: 93 FGVRVRPVFCTKIASRL--TRTYTNQ---------HGLKDNLKELLGINISKA--QQSSD 139 G+ R T S L Y+ L D ++E G+ + K + S+ Sbjct: 227 LGIDTRG---TLELSHLYKLVKYSESNPKLINKRPVSLSDQVEEHFGMPLEKDGNVRCSN 283 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 W+ L+ Q+QYAA+D L K + A L + AELDL Sbjct: 284 WATA-LNYRQVQYAATDPYACFRLFDTMNTKRK-------ALDPMPPLPEYAELDL 331 >gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114] gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114] Length = 935 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 31/195 (15%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A D I +DTET L L + ++ G I + AP Sbjct: 335 TTEAQFAALLDKLSQADKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 394 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVF-CTKIASRL 109 L L + +KI ++D V G+ + + +AS + Sbjct: 395 EQIDLQDVLGRLKPHLENSALKKIGQNLKYDQHVFANYGIALNGIALNGIAGDAMLASYI 454 Query: 110 TRTYTNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVH 159 ++ HGL + + LG+ +K +D + ++ YAA D Sbjct: 455 IESHL-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADF 509 Query: 160 LHALRLQFTEKLQRL 174 L ++ Sbjct: 510 ALRLEAHLRAQMDAK 524 >gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7] gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7] Length = 880 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 8/77 (10%) Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYT 114 + L + ++K EK+ H I V + F F T+IA+ L + Sbjct: 372 NEDTLKCLKDIFENDKIEKVSHN----IKVPYTVFKKMGINFTSVKFDTEIAAYLIDSSR 427 Query: 115 NQHGLKDNLKELLGINI 131 ++GL +++ L I + Sbjct: 428 GEYGLNSIIQDYLKIML 444 >gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000] gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000] Length = 946 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 26/190 (13%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL--------- 66 + + +DTET + P +L + LS G I +A + L Sbjct: 351 LLDASELVCIDTETTSIDPMLAQLVGLSLSVEPGQACYIPVAHRGPDVSGLDAAGQLSRE 410 Query: 67 ------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119 L D R+K+ + ++D V G+ +R + T + S + ++ N HG+ Sbjct: 411 AVLARMKPWLEDAARKKVGQHLKYDAHVFANH-GIALRGIAHDTMLQSYVLASHRN-HGM 468 Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + +L + K + L +YAA D L K+ Sbjct: 469 DALAERVLHLKTITYEEVCGKGASQIGFDEVPLDRA-TEYAAEDADITLRLHRALYPKVA 527 Query: 173 RLGRSDLATS 182 + Sbjct: 528 EDDKLRYVYE 537 >gi|48429404|gb|AAT42470.1| PolA [Escherichia coli B] Length = 179 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 8/118 (6%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121 L +L DEK K+ ++D +L G+ +R + F T + S + + +H + Sbjct: 9 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDS 67 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 + L ++ + + L+ Q+ +YAA D L L+ LQ+ Sbjct: 68 LAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 125 >gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266] Length = 931 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K+ H + + L T++A Sbjct: 395 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 454 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 455 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 487 >gi|15227581|ref|NP_181155.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] gi|4678223|gb|AAD26968.1| hypothetical protein [Arabidopsis thaliana] gi|50058835|gb|AAT69162.1| hypothetical protein At2g36110 [Arabidopsis thaliana] gi|330254113|gb|AEC09207.1| polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana] Length = 239 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 12/128 (9%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD---IAVLFYTFGVRVR 98 +QL G+ II+++ ++ L L DE + + D + + + Sbjct: 76 LQLCVGN-RCLIIQLSHCKRIPEVLRSFLEDETITFVGVWNSQDQGKLERFRHQLEIW-- 132 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAAS 155 + T + ++E LG + K S+W A LS +Q+ A+ Sbjct: 133 RLLDI---RHYLPTRLLNSSFEKIVEECLGYKGVRKDKEICMSNWGARSLSHDQIVQASD 189 Query: 156 DVVHLHAL 163 DV L Sbjct: 190 DVYVCCKL 197 >gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] Length = 915 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K+ H + + L T++A Sbjct: 379 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 438 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 439 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 471 >gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293] gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293] Length = 315 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W] gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W] gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 315 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987] gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC 10987] Length = 315 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 659 Score = 48.1 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 57/196 (29%), Gaps = 52/196 (26%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS---------PGDGTVDIIRIAAGQK------------ 61 + DTET GL P DR+ VQ++ G+ ++ Sbjct: 454 VVFDTETTGLDPVADRI--VQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDA 511 Query: 62 ---NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYT---FGVRVRP-VFCTKIASRL 109 AP++ L E + H FD+ L G V T + S + Sbjct: 512 MVAGAPDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHFDNQVLDTVLLSAM 571 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + H L + LGI I + + A D L+ Sbjct: 572 LWGQSAPHSLDALTER-LGIVIPPEARHT--------------AMGDARATAEAYLRLIA 616 Query: 170 KLQRLG--RSDLATSC 183 L+ G R + + Sbjct: 617 ALEAKGLDRFEDVLAE 632 >gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] Length = 910 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K+ H + + L T++A Sbjct: 374 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 433 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 434 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 466 >gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter sp. Re1] gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter sp. Re1] Length = 864 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 ++ + L +L D KI H G+F + G+ R F T +A+ L + Sbjct: 355 KLLKENSSISFLKQILEDTAIYKITHDGKF-TRNVLRQLGIDFRCQFDTMLAAYLLESSK 413 Query: 115 NQHGLKDNLKELLGINIS 132 ++ + + E LG +S Sbjct: 414 PRYDIPILVMEYLGKTMS 431 >gi|322705302|gb|EFY96889.1| 3'-5' exonuclease [Metarhizium anisopliae ARSEF 23] Length = 281 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 31/153 (20%) Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA---------SRLTRTYTN 115 +L +L E K+F R D LF +G+RV + ++ +R N Sbjct: 86 SLKNILESENIPKVFFDIRNDSNALFSHYGIRVGGIRDLQVMEFATRRGPPARFITGLAN 145 Query: 116 QHGL---------------KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 KD L + +K ++ L E +Y+A DV L Sbjct: 146 CIKYDCPMTESQKQSWLQMKDRAGRL--YDPNKGGGYEVFNERPLRREICEYSAQDVALL 203 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 L ++ KL ++ ++D A L Sbjct: 204 PKLWEAYSTKLSHSNKAFW-----QMMVDDATL 231 >gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacteraceae bacterium KLH11] gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacteraceae bacterium KLH11] Length = 470 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 59/201 (29%), Gaps = 51/201 (25%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----------GDGTVDIIRIAA 58 D+ + R + + DTET GL+P +D + VQ+ G+ ++ Sbjct: 265 DDVFEDRPLRDLCFVVFDTETTGLLPHKDEI--VQIGAVRVIKGRIVEGEQLDMLVDPGI 322 Query: 59 GQKNAP------NLVGMLVDEKREK--------------IFHYGRFDIAVLFYTFGVR-- 96 A N +L K + H FD+A L Sbjct: 323 PIPAASTRVHKINDAMVLGAPDIAKAGLIFHQFSRDAVIVAHNAPFDMAFLHRHAKRMGV 382 Query: 97 --VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 PV T + S + + H L LG+ I + + A Sbjct: 383 EWTHPVLDTVLLSAVLFGASETHTLDAVCAR-LGVTIPATLRHT--------------AL 427 Query: 155 SDVVHLHALRLQFTEKLQRLG 175 D V + ++ L G Sbjct: 428 GDAVATAEVLVRMLPMLTARG 448 >gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1] Length = 892 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K+ H + + L T++A Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448 >gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2] Length = 892 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K+ H + + L T++A Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448 >gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1] gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2] gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1] gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1] gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2] gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1] gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1] Length = 892 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K+ H + + L T++A Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448 >gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1] gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1] gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2] gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1] gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2] gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1] gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2] gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1] gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1] gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1] gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4] gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1] gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3] gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3] gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1] gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1] gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1] gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2] gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1] gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1] gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2] gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1] gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2] gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3] gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2] gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3] gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1] gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1] gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1] gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2] gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3] gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2] gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2] gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1] gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3] gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2] gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1] gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1] gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2] gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1] Length = 892 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K+ H + + L T++A Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448 >gi|308484203|ref|XP_003104302.1| hypothetical protein CRE_24938 [Caenorhabditis remanei] gi|308258271|gb|EFP02224.1| hypothetical protein CRE_24938 [Caenorhabditis remanei] Length = 179 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 LKD + E+ G+ + K + S+W +L +Q+ YAA D V LH L Sbjct: 103 SPSLKDYVHEVTGLEVLKTETMSNWRVLNLRKDQIWYAAMDTVSLHYL 150 >gi|115438991|ref|NP_001043775.1| Os01g0660800 [Oryza sativa Japonica Group] gi|55773822|dbj|BAD72360.1| hypothetical protein [Oryza sativa Japonica Group] gi|55773961|dbj|BAD72488.1| hypothetical protein [Oryza sativa Japonica Group] gi|113533306|dbj|BAF05689.1| Os01g0660800 [Oryza sativa Japonica Group] gi|125527143|gb|EAY75257.1| hypothetical protein OsI_03144 [Oryza sativa Indica Group] Length = 199 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 6/152 (3%) Query: 23 IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 + +D E P ++ + ++QL D I ++ +L L + Sbjct: 48 VGLDVEWRPSYGPAQNPVALLQLCV-DRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVG 106 Query: 82 GRFDIAVLFYTFGVRVRPVFCTK-IAS-RLTRTYTNQHGLKDNLKELLGINISKAQQ--S 137 D L G+ V + +A+ RL R +Q GL+ ++ ++G ++ K Q+ Sbjct: 107 VDKDAERLSDDHGLTVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTM 166 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 S W A LS+EQ++YA D + + Sbjct: 167 SRWDASCLSNEQIRYACIDAYVSFEVGRRLLR 198 >gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 315 Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550] gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550] Length = 318 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHANVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ H L+ K +LGI +S Sbjct: 127 FLAKKYMKQAPNHKLETL-KRMLGIRLS 153 >gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar konkukian str. 97-27] gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI] gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar anthracis str. CI] Length = 315 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23] gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23] gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514] Length = 923 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 61/205 (29%), Gaps = 26/205 (12%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI E R A+DTET L P + L + + G + Sbjct: 325 TIFTIEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPG 384 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 AP L +L D K+ +G++D+ VL V T + S + + Sbjct: 385 APVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTS 444 Query: 113 YTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS----DEQLQYAASDVVHLH 161 +H + + LG + K + S E QYAA D Sbjct: 445 GHARHDMDTLARRHLGYETMKYVDLVGKGAKQI-----PFSHVGVQEATQYAAEDADITL 499 Query: 162 ALRLQFTEKLQRLGRSDLATSCCNF 186 L KL R + Sbjct: 500 RLHCVLAPKLLAEPRLERVYREIEM 524 >gi|310794900|gb|EFQ30361.1| 3'-5' exonuclease [Glomerella graminicola M1.001] Length = 199 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 23/142 (16%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASRLTRTY 113 G K+ L +L K K+F R D LF FG+++ V ++ ASR R Sbjct: 24 TPGYKSNQALQSVLESPKITKVFFDVRNDSDALFAHFGIKLDGVQDLQLMEFASRGLRKG 83 Query: 114 T--------NQHGLKDNLKELLGINISKAQQS-----------SDWSADDLSDEQLQYAA 154 ++H + I + K + + L E L Y Sbjct: 84 FLCGLVKCIDKHSPLSPAERREWIKV-KDSGRKLFDPSSGGSYAVFDKRPLPTEILLYCI 142 Query: 155 SDVVHLHALRLQFTEKLQRLGR 176 DV +L L L + +KL R Sbjct: 143 QDVQYLPQLLLVYNQKLSPDWR 164 >gi|289613453|emb|CBI59597.1| unnamed protein product [Sordaria macrospora] Length = 295 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 24/147 (16%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASRLTRT 112 + L +L D + K F R D L+ VR+ V ++ ASR Sbjct: 67 FTTPGTDGKTLKAILEDPQTSKCFWDVRNDADALWAHHKVRLAGVTDIQLLENASR-VGD 125 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSA-----------------DDLSDEQLQYAAS 155 T HGL +++ L + ++ ++ W L + +QY + Sbjct: 126 KTYLHGLDKSVQSDLVLKWTEKER---WIRTKREVRALMTNNDVFACRPLDTKTMQYCVN 182 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS 182 DV+ L AL + ++ + + Sbjct: 183 DVLCLPALHNIYAKRTSKEWLAKAMDE 209 >gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1] Length = 892 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAA-GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A ++ L D+ R K+ H + + L T++A Sbjct: 356 DGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448 >gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2] gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2] Length = 892 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAA-GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A ++ L D+ R K+ H + + L T++A Sbjct: 356 DGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448 >gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis KBAB4] gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis KBAB4] Length = 315 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + K + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTKVI-VAHNASFDMRFLKSNVNMLGLPEPKNNVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus H3081.97] gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187] gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1] gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26] gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus H3081.97] gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH187] gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26] Length = 315 Score = 47.7 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] Length = 931 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 10/185 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAPNLVGM----LVDEKREK 77 + +D ET GL D + + + + ++ + + L E + Sbjct: 362 VCIDFETTGLDTLTDEIIGISFAIKSKEAFYLDLSGRTNIDKEACKKLVFDTLAKEDIKI 421 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 I H +++ ++ F T +A+ L ++ + D L N K Sbjct: 422 IGHNLKYEYKMMRAIDKKMGNMYFDTMVAAYLINPSRGRYNMDDLALSYLSYNTIKYSDI 481 Query: 138 SDWSADDLSDEQL----QYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRAE 192 +D + L D +L +YA D F L DL + A+ Sbjct: 482 TDNAKKTLLDVELKDVVEYACEDADITFRFYEYFAPLLNTYNLEDLFFNVEMPLISVLAD 541 Query: 193 LDLLG 197 ++ G Sbjct: 542 MEFDG 546 >gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] Length = 917 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 24/180 (13%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--------------AAGQKNAPN 65 + IA+DTET L L + + G I + Q Sbjct: 333 AELIALDTETTSLQAHDAELVGLSFATRAGEAWYIPVGHRSTDLLVPAPQQLPLQHVLAA 392 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 L +L D + K H ++D VL G+ + + + + + L + Sbjct: 393 LKPLLEDAAKRKCGHNLKYDAQVLRRA-GIELAGIAADSMLLAYCLYPAKYPPSLDSVAE 451 Query: 125 ELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + L + K + + +S YA D L + +L GR Sbjct: 452 DYLNYHCTPYSEVAGKGAKQVCFDEVPVSIA-TPYACEDADIALRLTGLLSAQLLTEGRL 510 >gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942] gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942] Length = 953 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 12/132 (9%) Query: 10 DIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRI-------AA 58 D+ R +A DTET L PR +L + + G+ + I + Sbjct: 353 DLVTLLEQRDSPEAIVAWDTETTDLDPRLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLP 412 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 Q L +L ++ K +FD +L + VF T +AS L + H Sbjct: 413 LQTVLTALRPILESDRHPKALQNAKFDRLILRHQGIELAGVVFDTMLASYLLNP-SLGHS 471 Query: 119 LKDNLKELLGIN 130 L L + Sbjct: 472 LDALADRWLKLQ 483 >gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301] gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301] Length = 964 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 12/132 (9%) Query: 10 DIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRI-------AA 58 D+ R +A DTET L PR +L + + G+ + I + Sbjct: 364 DLVTLLEQRDSPEAIVAWDTETTDLDPRLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLP 423 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 Q L +L ++ K +FD +L + VF T +AS L + H Sbjct: 424 LQTVLTALRPILESDRHPKALQNAKFDRLILRHQGIELAGVVFDTMLASYLLNP-SLGHS 482 Query: 119 LKDNLKELLGIN 130 L L + Sbjct: 483 LDALADRWLKLQ 494 >gi|331231583|ref|XP_003328455.1| hypothetical protein PGTG_09749 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307445|gb|EFP84036.1| hypothetical protein PGTG_09749 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 327 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 31/172 (18%) Query: 23 IAVDTETLGLMPRR-DR-LCIVQLSPGDGTVDIIRIAAGQK-------NAPNLVGMLVDE 73 ++ D E + R R ++Q+ G +I++ Q+ + L D Sbjct: 138 VSFDMEWVTDHRARKPRPTSLIQIC-GQTITLVIQLVHIQRPKWFLHVLPTPIAEFLRDP 196 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRP----------VFCTKIASRLTRT------YTNQH 117 K D L + ++L T Sbjct: 197 FIVKFGVGISGDADKLARDQFTDPTGSKVYLNAFLELIDV---AKLIDPTARDDIPTEAF 253 Query: 118 GLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L+ + L + K + +S+W + LS QL YAASDV+ + L+ Sbjct: 254 SLQRFVARYLEQFLPKTKSVVTSNWESFYLSPTQLNYAASDVISAMRVYLKL 305 >gi|323452751|gb|EGB08624.1| hypothetical protein AURANDRAFT_64013 [Aureococcus anophagefferens] Length = 217 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 45/147 (30%) Query: 21 DAIAVDTETLGLMPRRDRLC--IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 IAVD E +G +L +VQ++ G + + +A + L +L DE K+ Sbjct: 60 KVIAVDCEWIGEQ----KLGADVVQIAASTGPLYVFHVARMRHFPRGLKQLLADEAFAKV 115 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA-QQS 137 L + + +L + K Q+ Sbjct: 116 -------------------------------------GCCLWELARVVLRRRLPKGPAQT 138 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALR 164 S+W L +QL YAA DV A+ Sbjct: 139 SNWKQA-LDADQLAYAALDVEVTVAIH 164 >gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786] Length = 923 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P ++ + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVLAKLKPWLEDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 R+K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 SRKKLGQHLKYDAQVLVNH-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLDKA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17] gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17] Length = 315 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 40/147 (27%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDII------------------ 54 D + +D ET G P DR+ +Q++ D V + Sbjct: 9 DYVVIDFETTGFNPYNDRI--IQVAAVRYRNHELADQFVSFVNPERFIPNRITSLTGITN 66 Query: 55 ----RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRPV-FCTKI 105 Q+ P + L ++ + H FD+ L + + + T Sbjct: 67 YRVSDAPTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNANMLRLPEPKNIVIDTVF 124 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 125 LAKRYMKHAPNHKLETL-KRMLGICLS 150 >gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147] Length = 923 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P ++ + S G + +A + P L L D Sbjct: 349 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVLAKLKPWLEDA 408 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 R+K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 409 SRKKLGQHLKYDAQVLVNH-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L +YAA D L ++ R Sbjct: 467 KYEDVAGKGAQQIGFDEVPLDKA-SEYAAEDADITLQLHHALYPQIARE 514 >gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] Length = 1012 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 48/144 (33%), Gaps = 16/144 (11%) Query: 43 QLSPGDGTVD--IIRIAAGQKNA-PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 Q GDG + G ++A L +L KI +F AVL G+ ++ Sbjct: 460 QSGDGDGLFAAGLAPDQIGTRDALEALRPLLESPGVLKIGFNIKF-TAVLLAQHGLTLQN 518 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGIN-ISKAQ--QSSDWSADDLSDEQLQ----- 151 ++ S + HGL + LG +S + S L +Q+ Sbjct: 519 HDDVQLMSYALDAGRHAHGLDALAENWLGHKALSYGEVIGS---GKAKLGFDQVAIDRAT 575 Query: 152 -YAASDVVHLHALRLQFTEKLQRL 174 YAA D L +L Sbjct: 576 CYAAEDADVALRLWRILKPRLTAE 599 >gi|218198982|gb|EEC81409.1| hypothetical protein OsI_24649 [Oryza sativa Indica Group] Length = 159 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 20/136 (14%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG------RFDIAVLF 90 R +QL G + ++A G L L D R D L Sbjct: 18 PRPGTLQLCVGS-RCLVFQVAQGNAFPAALRRFLADGGV-----AAFVGYGIRSDCRKLA 71 Query: 91 YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI-NISK--AQQSSDWSADDLSD 147 G+ V CT+ +T ++ +ELLG+ I K A S W A LS Sbjct: 72 AHHGLHVA---CTRELRAVTGMGSSSM--ARMAEELLGLAGIKKPAAVGRSRWDAPKLSK 126 Query: 148 EQLQYAASDVVHLHAL 163 +Q++YA D H L Sbjct: 127 KQVKYACVDAFLSHRL 142 >gi|125598889|gb|EAZ38465.1| hypothetical protein OsJ_22850 [Oryza sativa Japonica Group] Length = 247 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 20/136 (14%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG------RFDIAVLF 90 R +QL G + ++A G L L D R D L Sbjct: 106 PRPGTLQLCVGS-RCLVFQVAQGNAFPAALRRFLADGGV-----AAFVGYGIRSDCRKLA 159 Query: 91 YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI-NISK--AQQSSDWSADDLSD 147 G+ V CT+ +T ++ +ELLG+ I K A S W A LS Sbjct: 160 AHHGLHVA---CTRELRAVTGMGSSSM--ARMAEELLGLAGIKKPAAVGRSRWDAPKLSK 214 Query: 148 EQLQYAASDVVHLHAL 163 +Q++YA D H L Sbjct: 215 KQVKYACVDAFLSHRL 230 >gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames] gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames Ancestor'] gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne] gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Bacillus anthracis str. A2012] gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0488] gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0442] gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0193] gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0465] gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0389] gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0174] gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis Tsiankovskii-I] gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0248] gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. CNEVA-9066] gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055] gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western North America USA6153] gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger B] gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum] gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Australia 94] gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. Ames] gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis str. Sterne] gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0488] gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0193] gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0442] gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0389] gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0465] gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0174] gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis Tsiankovskii-I] gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. A0248] Length = 315 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17025] Length = 695 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 60/201 (29%), Gaps = 59/201 (29%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDII-----RIAA 58 AE + + DTET GLMP +D + VQ++ D + I Sbjct: 487 AEARLEDLTYVVFDTETTGLMPSQDEI--VQIAAVRIVNGRRVEAEVFDTLVNPRRPIPP 544 Query: 59 GQK-----------NAPNLVGM------LVDEKREKIFHYGRFDIAVLFYT-------FG 94 +AP++ + + + H FD+ L F Sbjct: 545 SSTEVHGITDAMVADAPDMTEVGRQFHKFAEGAVL-VAHNAPFDMEFLRRAELLIDRRFD 603 Query: 95 VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 P+ T + S + T H L LGI I + + + A Sbjct: 604 ---NPILDTVLLSAVLFGQTEVHSLDALAHR-LGITIPEEARHT--------------AI 645 Query: 155 SDVVHLHALRLQFTEKLQRLG 175 D V L+ LQ G Sbjct: 646 GDTVATADAFLKLLPMLQGRG 666 >gi|307106638|gb|EFN54883.1| hypothetical protein CHLNCDRAFT_134987 [Chlorella variabilis] Length = 561 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Query: 114 TNQHGLKDNLKELLGINISKAQ--QSSDWSADD-LSDEQLQYAASDVVHLHALRLQFTE 169 + L + LL + + K+Q + S+W LS EQ +YAA+D + ++ Sbjct: 307 PQRWSLAGLVSLLLRLRLDKSQAIRCSNWEVRPPLSSEQQRYAATDAWCSLRVYEVLSK 365 >gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. CDC 684] gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis str. CDC 684] Length = 315 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] Length = 894 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 28/215 (13%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGT-VDIIRI--- 56 VH ++ A + +A+DTET L P +V S GD T + + Sbjct: 299 VHREELARLLATLEQTERVAIDTETSSLDPHAAE--LVGFSLAWFEGDRTRAVYVPLGHR 356 Query: 57 ----AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111 L L D + K+ +FD + + G+R R + T + S + Sbjct: 357 EGKQIPRDVALALLGPWLEDGSKAKLAQNAKFDWQIFWAQ-GLRPRGLARDTLLESYVLD 415 Query: 112 TYTNQHGLKDNLKELLGI-NIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 + T H L + L NIS K +Q+ ++A D++ YAA D + Sbjct: 416 S-TAAHDLDSLAERYLQHRNISYAELTGKGRQARSFAAVDIASA-TAYAAEDAEVCLRVD 473 Query: 165 LQFTEKLQR-LGRSDLATS-CCNFLMDRAELDLLG 197 Q +++R G + + + A ++ G Sbjct: 474 AQMWPQIRRHEGLARVFRDIEMPLVEVLARMEWAG 508 >gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8] gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8] Length = 942 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 13/123 (10%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVG 68 + I DTET L P ++ + S GT + + +AP+ Sbjct: 363 QAELICFDTETTSLDPLTAQIVGMSFSVAAGTGAYLPLTHDYFDAPSQLPLAEVLAKFKP 422 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 +L + +K+ ++D VL G+ + + T + S + ++ HG+ + L Sbjct: 423 LLENPTIKKVGQNLKYDKHVLANH-GIALNGIAHDTLLQSYVLESH-RGHGMDELSARHL 480 Query: 128 GIN 130 GI Sbjct: 481 GIE 483 >gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91] gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91] Length = 906 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 21/166 (12%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 + +++DTET L P L + L G I +A + P+ L Sbjct: 328 AELVSIDTETTSLNPMEAELVGLSLCTEPGHAAYIPLAHHYQGVPSQLNREQVLQRLKPW 387 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128 L + K+ ++D V GV + + T + S + ++ H L + L Sbjct: 388 LENSDIPKVGQNLKYDRHVFANH-GVMLNGIAHDTLLQSYVLESHL-SHDLDSLARRHLD 445 Query: 129 IN-IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 I IS K + + ++ + YAA D L Sbjct: 446 IQTISYDDVTGKGAKRIGFEQVEIQQAGI-YAAEDADIPLRLHHFL 490 >gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873] gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873] Length = 881 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 22/114 (19%) Query: 70 LVDEKREKIFHYGRFDIA---VLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKE 125 D+ +KI H DI V+ + + + +F TKIAS L + + L++ + E Sbjct: 384 FEDKNIKKISH----DIKNVYVVLRKYDIDAKNFIFDTKIASYLLEPSKSDYILREIILE 439 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 L INI D SDE+ + + + + + ++++ +L Sbjct: 440 KLSINID------D------SDEECK--IKETYCIKEIYEKLQKEIKEANMEEL 479 >gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1] gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1] Length = 911 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 25/179 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------- 65 + + AVDTET L P L + ++ I + AP Sbjct: 328 LKGLPRFAVDTETTDLHPHSAELVGISIAWQPMVAYYIPVGHALDAAPEGQLPRADVLAA 387 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLK 124 L +L + K ++D + + ++ + + + S L H L Sbjct: 388 LKPLLESPEIGKTGQNIKYDYQIFKRYH-ITMQGIERDSMLYSYLLYGANRAHNLDAIAT 446 Query: 125 ELLGIN-------ISKAQQSSDWSADDLSDEQLQ--YAASDVVHLHALRLQFTEKLQRL 174 E LG K ++ + L L YA D L R Sbjct: 447 EELGRTTIKFEDVAGKGRKRIRFDQVPL---HLAAPYACEDAEVTWQAAASMAPNLDRE 502 >gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002] gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002] Length = 887 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 46/202 (22%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + A A +++DTET L RL + S +G + +A P Sbjct: 294 LTAAQLDAWLAKLEAAPVVSLDTETTSLDQMEARLVGISFSVTEGEAAYLPLAHHYAGVP 353 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + R+K+ ++D VL G+ + V T +AS + ++ Sbjct: 354 EQLDLAATLARLKPWLENPARKKLGQNLKYDRHVLANH-GIALAGVADDTLLASYVIESH 412 Query: 114 TNQHGLKDNLKELLGINIS-------KAQQSSDWSADDLSDEQL-----------QYAAS 155 H + D + LG + K +Q+ YAA Sbjct: 413 LT-HNMDDLARRHLGESTVSYEEICGKG------------AKQIGFAEVDIAVASNYAAE 459 Query: 156 DVVHLHALRLQFTEKLQRLGRS 177 D L KL GR Sbjct: 460 DADITLRLNRALAGKL--EGRL 479 >gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425] gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425] Length = 982 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 67/198 (33%), Gaps = 44/198 (22%) Query: 10 DIPAECAA---------RYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRI 56 D P + AA +A DTET L PR + +V + P + + + Sbjct: 370 DTPEKLAALVETLQTCTDPGTPVAWDTETTALSPRDAQ--LVGIGCCWGPAPDQIAYLPL 427 Query: 57 AAGQ-------KNAPNLVGMLVDEKREKIFHYGRFDIAVLF----YTFGVRVRPVFCTKI 105 Q L +L D + K F ++D VL + GV VF T + Sbjct: 428 GHSQGGNLDLTLALEQLRPLLEDARYPKAFQNTKYDRLVLKFQGVHLQGV----VFDTML 483 Query: 106 ASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQL-QYAASDV 157 AS + H L D ++ L I + K Q +D LS E + Y DV Sbjct: 484 ASYVLNPEG-SHNLTDLSRKYLDITAQSYTDLVEKGQNLAD-----LSVEAIANYCGLDV 537 Query: 158 VHLHALRLQFTEKLQRLG 175 L + L Sbjct: 538 YATFQLVPKLRADLLDAN 555 >gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] Length = 957 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 36/203 (17%) Query: 23 IAVDTETLGLMPRRDRLCIV-----------QLSPGDGTVDIIRIAAGQKNAP------N 65 I +D ET GL P RD + V Q PG + G Sbjct: 377 ICIDLETTGLDPLRDEI--VGWAIAWAAQHGQ--PGRAVYLPVLGPPGSVLLDGTAVVQT 432 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 L +L + + + I +FD+ + G+R + T + L H L+ + Sbjct: 433 LKPILENPQCQLINQNVKFDLLAM-RKVGIRPATIGLDTMVGDYLLDAGARSHNLEVLGQ 491 Query: 125 ELLG---INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLG 175 + L I IS S + + Q+ +YA D + + +LQ G Sbjct: 492 KYLSAATIPISDLLGS---GKNQKTMNQIEIERVAEYATEDAELVVRMAPIIESQLQEAG 548 Query: 176 RSDLATS-CCNFLMDRAELDLLG 197 L + A+++ G Sbjct: 549 LWKLYDEVEKPLIPVLADMEFKG 571 >gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 656 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 36/185 (19%) Query: 17 ARYVDAIAVDTETLGLMPRR--DRLCI---------VQLSPGDGTVDIIRIA-------- 57 V +A D ET R + + V S +G + +A Sbjct: 17 LAGVSPVAFDFETAPDNEYRKEPKAALDAHKAHITGVSFSVTEGDAIYVPLAHRVGVNCE 76 Query: 58 AGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT------ 110 L + I H F+ L+ V P + T A++LT Sbjct: 77 DPDALWAFLKESIFESHDVICIAHNLSFEAMFLYKQGIVVQEPCYDTIAAAQLTMKSKWE 136 Query: 111 -RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSD------EQLQYAASDVVHLHAL 163 R + GLK L G ++ +D + E ++YA +D + L Sbjct: 137 FRGLHDS-GLKLLATSLFGADMPSFSSVTD--GRHFDEMNPQEYETVRYACADSDYTLCL 193 Query: 164 RLQFT 168 +F Sbjct: 194 YYKFN 198 >gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3] gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3] Length = 318 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + I H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHTNVI-IAHNASFDMRFLKSNVSMLGLPEPQNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|224011024|ref|XP_002294469.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969964|gb|EED88303.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 771 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 42/173 (24%) Query: 18 RYVDAIAVDTE--TLGLMPRRDRLCIVQLS---PGDGTVDIIRIAAGQKN---------- 62 + +A D+E T + L +Q S G ++ + G+ + Sbjct: 587 QLEKMVAFDSEWCTHDGVT---ELATIQFSVFEDGVPNAWVVDLLGGRVDDGSIHDPSYS 643 Query: 63 ---APNLVGML--VDEKREKIFHYGRFDIAVLFYTFG----VRVRPVFCTK-IAS-RLTR 111 L + D H R D+ +L G V + + IA+ R+T Sbjct: 644 NVACDVLRWLFLESDAHIVGFAH--RHDLHMLSTYIGEEISVSCPRYWDLQLIAANRMTE 701 Query: 112 TYTNQH----GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYA 153 + GLK +SK +Q S+W+ L QL+YA Sbjct: 702 DTGQEVSSLPGLKSCCSFFFNNQKDSNSWSLSKEEQCSNWNERPLRPSQLEYA 754 >gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1] gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1] Length = 925 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 29/131 (22%) Query: 21 DAIAVDTETLGLMPR------------------RDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + +D ET+ P + ++ + LS G I + + Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266 Query: 63 AP---------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRT 112 P L +L E E I H G+FDI L + + + ++ T + L T Sbjct: 267 MPGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDTLIWDTMLIHYLCIT 326 Query: 113 YTNQ-HGLKDN 122 HGLKD Sbjct: 327 EEKGTHGLKDL 337 >gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198] gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198] Length = 904 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 89/254 (35%), Gaps = 65/254 (25%) Query: 4 IRVHEGDIPAECAARYVDA-IAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIA 57 + E ++ A + DA IA D ET GL + RL C G + I+ Sbjct: 321 LITEERELFALLDSIPSDALIAYDCETNGLDALQARLVGFSFC----FDG-IHGYYVPIS 375 Query: 58 AG------QKNAPNLVGMLVDEKREKIF------HYGRFDIAVLFYTFGVRVRP-VFCTK 104 Q + + EKIF H +FD+ + F + + + + Sbjct: 376 HDYLGVGKQVDTKDAKR-----AIEKIFSHPIVGHNLKFDLMIAKANFNLTPKREIQDSM 430 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDV 157 + + L + + GL +++ G + K + D DL +YA+ D Sbjct: 431 LLAYLLDS-ASMMGLDILMEKFFGKKMIAYDEVVKKGKTFGD---VDLERA-SEYASEDA 485 Query: 158 VHLHALRLQFTEKLQR---LGRSDLATS-CCNFLMDRAELDLLG------W--------- 198 V L+ + E+LQ +LA F+ A+++ G W Sbjct: 486 VACFCLQERLKEELQAKRCAHLLELAKDLEYPFIEVLADMEYQGIKIDVEWFEALKESLS 545 Query: 199 -----ENVDIFSHS 207 + +IF+H+ Sbjct: 546 EALSQKEEEIFAHA 559 >gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L] gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L] Length = 315 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 ++ + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLNYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64 Query: 61 -----KNAPNLVGML------VDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP + +L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPVFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus coleocola ACS-139-V-Col8] gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus coleocola ACS-139-V-Col8] Length = 1435 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAGQ-------- 60 P E A + + D ET GL D++ ++L+ +G V I A Sbjct: 410 PKEIALKEATYVVFDVETTGLSSVYDKI--IELAAVKMKEGQV-IDTFEAFINPNQPLSS 466 Query: 61 -------------KNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---FYTFGVR--V 97 ++AP +L D + + H FDI L + G+ Sbjct: 467 FTTELTGITNAMVEDAPQEDVVLKDFYDFSQNTILVAHNASFDIGFLNKGYERIGIENTP 526 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T SR+ + H L K G+N+ + ++ Sbjct: 527 LPVIDTLELSRMVNPHLKSHRLNTLAKRY-GVNLEQHHRA 565 >gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC 17029] Length = 695 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 58/197 (29%), Gaps = 51/197 (25%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDII-----RIAA 58 AE + + DTET GLMP +D + VQ++ +D + I Sbjct: 487 AEARLEDLTYVVFDTETTGLMPSQDEI--VQIAAVRIVNGRRVEAEVLDTLVNPHRPIPP 544 Query: 59 GQKNAPNLVGML--VDEKR--------------EKIFHYGRFDIAVLFYT---FGVRV-R 98 + + + H FD+ L G R Sbjct: 545 SSTEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGRRFDN 604 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 P+ T + S + ++ H L + GI I + + + A D V Sbjct: 605 PILDTVLLSAVLFGQSDVHSLDALTHRI-GITIPEEARHT--------------AIGDTV 649 Query: 159 HLHALRLQFTEKLQRLG 175 L+ LQ G Sbjct: 650 ATADAFLKLLPMLQGRG 666 >gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 711 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 8/90 (8%) Query: 52 DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIAS 107 I + AG P + D + H FD+ L GVR PV T I S Sbjct: 580 VIDKPPAGVV-LPQFRSYVADA--VLVAHNAAFDLKFLRMREKEMGVRFDSPVLDTMILS 636 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQS 137 H L D + GI I+ + Sbjct: 637 NFLDGPEAGHSLDDICERY-GIEITDRHTA 665 >gi|171689072|ref|XP_001909476.1| hypothetical protein [Podospora anserina S mat+] gi|170944498|emb|CAP70609.1| unnamed protein product [Podospora anserina S mat+] Length = 328 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 62/181 (34%), Gaps = 30/181 (16%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQ-LSPGDGTVDIIRI----------AAGQKNAPNLV 67 +I VD E L L ++ L P D V II + + + + L Sbjct: 30 PSSSIYVDLEGTNLGRG-GTLDLITVLVPPDRKVRIIDVKAMGNQAFTTPSKKDDNVTLK 88 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--GLKDNLK- 124 +L D K R D L + V + V ++ LTR + + GL ++ Sbjct: 89 SILEDPSIRKYLWDVRNDADALKSLYHVAISGVIDLQLLENLTRQGNSFYVTGLDKAVEN 148 Query: 125 ------------ELLGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + +I K S D +S + L+Y A DV L LR + Sbjct: 149 DLRLDQQEQIEWKKTKEDIRKRMASGDSGIFSTRPFTTPVLRYCAGDVQFLPLLRKAYEA 208 Query: 170 K 170 + Sbjct: 209 R 209 >gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134] gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134] Length = 941 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 26/167 (15%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------------APNLVG 68 A+DTET L P +L + LS G I + + + Sbjct: 362 AIDTETTSLDPMLAQLVGISLSVEPGEACYIPVGHRGPDVAGMENNGQLSRDTVLARMRA 421 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELL 127 L D+ + K+ ++DI V GV + V T + S + ++ N HG+ + LL Sbjct: 422 WLEDDSKPKLGQNIKYDIHVFANH-GVTLCGVAQDTMLESYVLASHRN-HGMDSLAERLL 479 Query: 128 GINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + K + DL+ +YAA D L + Sbjct: 480 NLKTITYEEVCGKGASQIGFDQIDLARA-TEYAAEDADVTLRLHRKM 525 >gi|435164|emb|CAA53760.1| DNA polymerase I [Rhizobium leguminosarum] Length = 158 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 13/146 (8%) Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 P L +L DE K+ ++D +L +G+ R T + S + +HG+ Sbjct: 10 DALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETRSFDDTMLISYVLEPAPARHGMD 68 Query: 121 DNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQ 172 ++ LG K S +++ D YAA D L L Sbjct: 69 PLSEKFLGHTPIPYKDVAGS--GKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPGCA 126 Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197 R G + + L A ++ G Sbjct: 127 R-GLTSVYERLERPLLPVLARMEARG 151 >gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] Length = 303 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 ++ + +D ET G P D++ +Q++ VD RI + Sbjct: 10 PLNYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + + H FD+ L + P V T Sbjct: 68 TNYRVSDAPTIEEVLPLFLAFLHKNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153 >gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342] gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342] Length = 315 Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRI------ 56 +D + +D ET G P D++ +Q++ VD RI Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 64 Query: 57 -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 A + L + + H FD+ L + P V T Sbjct: 65 TNYRVSDARTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLSLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + H L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150 >gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 917 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 23/163 (14%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A+DTET L P + +L + L G I +A ++ P L L D+ Sbjct: 343 AIDTETTSLEPMQAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVLEKLRSWLEDD 402 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + K+ ++D + V T + S + ++ H + L K Sbjct: 403 SKPKVGQNLKYDSHIFANHGVTLRGIVHDTLLQSYVFESH-RSHDMDSLALRHLNR---K 458 Query: 134 AQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQF 167 D A L +Q+ +YAA D L + Sbjct: 459 TMTFQDVCGKGASQLCFDQVDIARATEYAAEDADITLQLHQRM 501 >gi|159470993|ref|XP_001693641.1| predicted protein [Chlamydomonas reinhardtii] gi|158283144|gb|EDP08895.1| predicted protein [Chlamydomonas reinhardtii] Length = 277 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 26/177 (14%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70 + + AA + +D E P Q G V ++ P L +L Sbjct: 113 LVGQLAAAAPAVVGLDME---WKP--------QYVAGRHCVCLLLHVLHSGIPPRLRHLL 161 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--CTKIAS-RLTR---------TYTNQHG 118 E+ K+ D + L GV +R + ++A+ R+ + Y ++ Sbjct: 162 EAEQPVKVGVNISGDASKLRRDCGVEMRGLLELD-EVANDRVLQVIENITVNTEYRSRWS 220 Query: 119 LKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L ++ L ++ K + +W L Q +YAA D A+ + +R Sbjct: 221 LSALVETALRCHLPKPNNIRCGNWERKPLDGAQRRYAALDAYAGLAVWAALLLRSRR 277 >gi|330914249|ref|XP_003296559.1| hypothetical protein PTT_06691 [Pyrenophora teres f. teres 0-1] gi|311331249|gb|EFQ95359.1| hypothetical protein PTT_06691 [Pyrenophora teres f. teres 0-1] Length = 544 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 63/154 (40%), Gaps = 24/154 (15%) Query: 36 RDRLCIVQLSPGD--GTVDI-IRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDI---- 86 + + ++Q++ D G I I ++ AP+L ++ D + EK+ DI Sbjct: 85 QQKAGLIQIATQDKVGLFHIGIHPGKTSEDIIAPSLKRLIEDPRIEKV----GVDIWNGN 140 Query: 87 -AVLFYTFGVRVR-PVFCTKIASRLTRTYTNQ--------HGLKDNLKELLGINISKAQQ 136 + L FG+ + + C+ + RL + ++ L D +++ + + + Sbjct: 141 FSRLSRWFGLNPKGAIECSHL-YRLVKFGRSKPELVTTRLVSLADQVQDQFRLVLDEEIS 199 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + + L ++ +AA + + + + +K Sbjct: 200 QASFLGRTLKRKEKNHAARNAYAVSQVYRRLLKK 233 >gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 719 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 51/197 (25%) Query: 13 AECAARYVDAIAVDTETLGLMPRRD---------RL---CIVQ-------------LSPG 47 AE A + + DTET GL P R RL ++Q + Sbjct: 515 AERALDQLSCVVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKPCRAIPDS 574 Query: 48 DGTVDII---RIAAGQKNAPNLVGM--LVDEKREKIFHYGRFDIAVLFYT---FGV-RVR 98 I +A + P L + E+ + H FD+ L G+ + Sbjct: 575 ATRFHGISNEDVARAPEIGPVLRAFSRFIGEESVLVAHNAAFDMGFLRRAQARAGLAFPQ 634 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 PV T + S ++ H L+ + E LG+ + K A +D Sbjct: 635 PVLDTLLLSVYLHDHSPDHTLEG-VAERLGVEVQKRHS----------------ALADAR 677 Query: 159 HLHALRLQFTEKLQRLG 175 + + L+ G Sbjct: 678 VTADVFARMIPLLRERG 694 >gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 727 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 11/127 (8%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L + +E KI H ++D VL G+ +R + S + + H + + Sbjct: 198 LSYLKKIFENEHLLKIGHNIKYDKLVLQRY-GIIIRGFEDIMLMSYVLDSGRYSHDIANI 256 Query: 123 LKELLGINI--SKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174 K+ L ++ K + +S +Q+ +Y + L L KL Sbjct: 257 AKKWLFYDLITRKEMLKT--GKRSISIDQISNSRIQEYVVEKSNVILQLWLLLRAKLIAE 314 Query: 175 GRSDLAT 181 + Sbjct: 315 KLLHVYE 321 >gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] Length = 907 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 14/129 (10%) Query: 13 AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65 E AR A DTET L + + + G + +A P Sbjct: 319 DEWLARLSAAPLFAFDTETTSLNYMEAEIVGLSFAVERGEAAYVPLAHSYPGTPAQLDRD 378 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119 L +L D + K+ ++D +VL + ++ + F T + S + + +H + Sbjct: 379 AVLAALKPLLEDPDKAKLGQNLKYDASVLARY-DIAMQGIAFDTMLESYVLDSTGTRHDM 437 Query: 120 KDNLKELLG 128 + LG Sbjct: 438 DSLALKYLG 446 >gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855] gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855] Length = 926 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 16/187 (8%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-----APNLVGMLVDEKREKI 78 A D E P L + S + L +L EK+ Sbjct: 358 AFDAEATSRDPMTADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGPVLA-RDTEKL 416 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI------NIS 132 H ++D+ +L +F T +A L H L D + +L ++ Sbjct: 417 GHNLKYDLLLLKQHGVEVGGTLFDTMVAHYLVAPE-ENHNLDDVARSVLNYKMVPIADLI 475 Query: 133 KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDR 190 + D S ++ E YA D + L + +L+ D+A + Sbjct: 476 GDETDRD-SMREVEVETAAPYACEDADISYRLADELEAQLEDGNVLDVAHDIEFPLVHVL 534 Query: 191 AELDLLG 197 A ++ G Sbjct: 535 ATMEHTG 541 >gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4] gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4] Length = 912 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 16/142 (11%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPV- 100 + G+G + A + + L L D + KI H D+ V + G + Sbjct: 368 ADGEG-AYVDVTAMDEADDRALSAWLADPEIRKIGH----DLKVPLHAVRARGWTFGGLN 422 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYA 153 T +A+ L R GL D L + D AD+L +++ Sbjct: 423 MDTALAAYLARPGQRTFGLDDLALRYLHRELRSEAGDGDGQLSLLDGGADELEQKEISAE 482 Query: 154 ASDVVHLHALRLQFTEKLQRLG 175 + L +L+ LG Sbjct: 483 LVKARAIFELAGALAAELEELG 504 >gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5] gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5] Length = 988 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 59/187 (31%), Gaps = 33/187 (17%) Query: 16 AARYVDAIAVDTETLGLMPRRDRL-CI---VQLSPG---------DGTVDIIRIAAGQKN 62 +DTET + R+ L + VQ +G I + Sbjct: 387 LLASAPHFVIDTETTSVYWRQAELVGLSFAVQAHEAYYIPLTHALEGDELIAKQLDRDTV 446 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVR------VRPV-FCTKIASRLTRTYT 114 L +L + KI + ++D +L Y + T +AS + Sbjct: 447 LARLKPILENPNIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAAI 506 Query: 115 NQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRL 165 +HG+ D + L D A +S +Q+ YA D + L Sbjct: 507 TRHGMDDLARHYLQTQ---TISFEDVAGKGAKQVSFDQVAIDIASDYACEDADITYQLFD 563 Query: 166 QFTEKLQ 172 F++KL Sbjct: 564 LFSKKLA 570 >gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] Length = 921 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 42/218 (19%) Query: 7 HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 +E +I CA + +A+DTET + +L + S G I ++ Sbjct: 334 NEDEIRDFCAQLLTFEKVALDTETTDKEAIKAKLVGMSFSTAPGRAWYIPVSRETDTVKA 393 Query: 66 LVGML----VDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLK 120 + +L + ++D+ VL ++GV+ + +F T + Y Q L Sbjct: 394 RLELLRPFWEKADVLIVGQNLKYDLTVL-ASYGVKPKGRLFDT-----MLSHYVVQPELA 447 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQL--------------------QYAASDVVHL 160 N+ L + ++ + EQL +YA D Sbjct: 448 HNMDYLASVYLN---------YRPIPIEQLIGPKGRGQRNMGDLDPKDVFEYACEDADVT 498 Query: 161 HALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L + ++ G + + A ++ G Sbjct: 499 LRLMAPLEKAMRENGVEQIFYDIEMPLMPVLARMERNG 536 >gi|159475214|ref|XP_001695718.1| hypothetical protein CHLREDRAFT_175235 [Chlamydomonas reinhardtii] gi|158275729|gb|EDP01505.1| predicted protein [Chlamydomonas reinhardtii] Length = 299 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 K+ H G D+ L F + + VF T+ A+ + + L LK Sbjct: 102 KVLHGGGNDVTWLQRDFRLYLVNVFDTEKAAAVLAY--DSRALAALLKRH 149 >gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 911 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 23/163 (14%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A+DTET L P + +L + L G I +A ++ P L L D+ Sbjct: 337 AIDTETTSLEPMQAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVLEKLRSWLEDD 396 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + K+ ++D + V T + S + ++ H + L K Sbjct: 397 SKPKVGQNLKYDSHIFANHGVTLRGIVHDTLLQSYVFESH-RSHDMDSLALRHLNR---K 452 Query: 134 AQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQF 167 D A L +Q+ +YAA D L + Sbjct: 453 TMTFQDVCGKGASQLCFDQVDIARATEYAAEDADITLQLHQRM 495 >gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] Length = 879 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 41/222 (18%) Query: 2 TTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIR 55 T+ + E + + + IA DTET GL R ++ C+ + + Sbjct: 297 ATLILDENTLFDKLESLESESIIAFDTETTGLNAREAKIVGFSFCV-----SENEAFYVP 351 Query: 56 IAAGQKNAPNLVGMLVDEKRE-------KIFHYGRFDIAVLFYTFGVRVRPVF-CTKIAS 107 + P+ + M ++ I H ++D A++ F + + T I + Sbjct: 352 LNHTYLAVPSQISMQAAKRALGQIYSHFIIGHNLKYDFAIIENNFKLTPPKKYADTMILA 411 Query: 108 RLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDV--- 157 L + + + D L + K + ++++ +L YAA D Sbjct: 412 WL-YNPSLRVNMDDLALRLFDYKTLHFESVVKKGE---NFASVELEKA-CNYAAEDAYIT 466 Query: 158 --VHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 +L+ L+ L +LG S NF+ +++ G Sbjct: 467 LRFYLYFLKN-LEPNLLKLG----FESEFNFIEVLRKMEQNG 503 >gi|308462810|ref|XP_003093685.1| hypothetical protein CRE_23111 [Caenorhabditis remanei] gi|308249485|gb|EFO93437.1| hypothetical protein CRE_23111 [Caenorhabditis remanei] Length = 324 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + L+ ++ + ISK++ S+W L D+Q+QYAA D + LH + Sbjct: 225 PRLSLQAAADQI-RVPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNI 272 >gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301] gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301] Length = 928 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 19/179 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + DTET L P ++ + S G+ + + +AP + Sbjct: 347 LQTAKLMCFDTETTSLDPMTAKIVGMSFSVEAGSAAYLPLKHDYFDAPEQLDFVETLAKI 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L + +K+ ++D VL G+ + + T + S + ++ HG+ + Sbjct: 407 KPILENAAIKKVGQNFKYDQHVLANH-GIALNGIAHDTMLESYVFESH-KTHGMDALAER 464 Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178 LGI ++ + A ++ Q+ +YAA D L ++ + D Sbjct: 465 HLGIQTISFEEVAGKGAKQVTFNQVTVEVASEYAAEDADITLQLHQAMYPQISTDAKLD 523 >gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 906 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 23/78 (29%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 +++ L D R K+ H + + V T +A+ L + Sbjct: 376 DPTEVDEEDERAFAAWLADPARPKVLHNAKGAMRVFAEHGWTIEGVTMDTALAAYLVKPG 435 Query: 114 TNQHGLKDNLKELLGINI 131 L E LG + Sbjct: 436 RRSFDLDALTLEYLGREL 453 >gi|302683492|ref|XP_003031427.1| hypothetical protein SCHCODRAFT_109934 [Schizophyllum commune H4-8] gi|300105119|gb|EFI96524.1| hypothetical protein SCHCODRAFT_109934 [Schizophyllum commune H4-8] Length = 319 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 40/194 (20%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 R A+D E L +L ++ D T + +A +L+ +L D Sbjct: 16 LRRSGIFALDMEGRDLGAANGKLSVISFRTLDDVTYLVDALAFTADQLQSLLSLLADSSV 75 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA---------------SRLTRTY------- 113 K+ GR D + L + +GV++R +IA RL+R Y Sbjct: 76 TKLVWDGRMDASELLHGYGVQLRGAVDLQIADIMARRKRESFFDQKRRLSRGYRGIPASL 135 Query: 114 ------TNQH---GLKDNLKEL------LGINISKAQQS--SDWSADDLSDEQLQYAASD 156 + H GL+ ++ +G+ + + S W L+ EQ+ YA D Sbjct: 136 ITEAEFADVHRLNGLRGAAEDYGVIQRPMGLRGPQGPKFDHSKWLQRPLTAEQVVYATED 195 Query: 157 VVHLHALRLQFTEK 170 V + AL F + Sbjct: 196 VDMILALYRIFKGR 209 >gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sp. oral taxon 014 str. F0314] gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sp. oral taxon 014 str. F0314] Length = 463 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 63/211 (29%), Gaps = 51/211 (24%) Query: 13 AECAARYVDAIAV-DTETLGLMPRRDRLC-----------------IV--QLSPGDGTVD 52 A A + +AV D E+ G RDR+ +V Q D Sbjct: 11 AAAFAGFGRPVAVVDLESTGGNFYRDRITEVAVLRFERGAAKRYEWLVNPQQPIPKFVAD 70 Query: 53 IIRIAAGQKN-APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF---GV-RVRPVFC 102 + I + AP + D + H RFD L + F G+ P C Sbjct: 71 LTGITDEAVSGAPVFSDIAADLLPLLHGAVVVAHNSRFDYTFLRHEFRRAGMDFAAPALC 130 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T SR +H L ++ GI + + A +DV A Sbjct: 131 TVQLSRRLYPQFYRHNLDSIIERF-GIAVESRHR----------------AMADV---AA 170 Query: 163 LRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 L L G + C LM+ L Sbjct: 171 LSDFLERSLVEKGAEEW-ERHCRSLMNPKML 200 >gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] Length = 901 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 9/108 (8%) Query: 44 LSPGDGTVDIIRIAA-GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-- 100 ++ G G+ + + + L L D R K+ H G +++ R + Sbjct: 358 IADGPGSAVALDLTDLSAADDTALSDWLSDPTRAKVVHGG----KSVWHELASRGYSLEG 413 Query: 101 --FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLS 146 F T++A+ L + L D + L ++ SSD A DLS Sbjct: 414 VVFDTELAAYLCFPDQRSYDLGDLAERHLHRELTPVDTSSDQGALDLS 461 >gi|224117124|ref|XP_002317483.1| predicted protein [Populus trichocarpa] gi|222860548|gb|EEE98095.1| predicted protein [Populus trichocarpa] Length = 199 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 8/154 (5%) Query: 23 IAVDTE-TLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 I +DTE L P ++ I+QL G I ++ +L+ L +EK + Sbjct: 46 IGLDTEWFLPAYPGDYQKIAILQLCVG-RRCLIFQLCHADYFPRSLIDFLGNEKYTFVGK 104 Query: 81 YGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTN--QHGLKDNLKELLGINISK--AQ 135 R D L +G+ V A+ + + GLK + L + K Sbjct: 105 EVRNDAHKLMNDYGLNVGHCRDVAYWAASKHGGDEDFRKFGLKRLVLRFLKKELEKPLKI 164 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 S W L +Q++YA D L ++ Sbjct: 165 TLSRWDRKKLDYQQIKYACLDAFVSFKLGELLSK 198 >gi|222618988|gb|EEE55120.1| hypothetical protein OsJ_02898 [Oryza sativa Japonica Group] Length = 174 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%) Query: 30 LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL 89 L P + ++QL D I ++ +L L + D L Sbjct: 35 LRENP----VGLLQLCV-DRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERL 89 Query: 90 FYTFGVRVRPVFCTK-IAS-RLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDL 145 G+ V + +A+ RL R +Q GL+ ++ ++G ++ K Q+ S W A L Sbjct: 90 SDDHGLTVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCL 149 Query: 146 SDEQLQYAASDVVHLHALRLQFTE 169 S+EQ++YA D + + Sbjct: 150 SNEQIRYACIDAYVSFEVGRRLLR 173 >gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803] gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803] Length = 986 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 29/173 (16%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRIAAGQKNA-------PNLVGMLVD 72 +A DTET L P L + + G V I + Q L +L + Sbjct: 397 PVAWDTETDSLDPLVANLVGIGCAWGQEPNQVAYIPLKHHQGEQLSLGIIKDLLGEILGN 456 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL-LG--- 128 K+ +FD VL + V T +AS + + H L D + LG Sbjct: 457 AIYPKVLQNAKFDRRVLAHHGIELGGVVLDTMLASYVLQPE-ETHNLTDLCRRYNLGLVA 515 Query: 129 -----INISKAQQSSDWSADDL-SDEQLQYAASD--VVHLHALRLQFTEKLQR 173 + + K Q +D L + Q Y D +L L + ++L + Sbjct: 516 LSYKDLGLKKDQTIAD---LPLETAGQ--YCGLDCYATYL--LASKLQKELDQ 561 >gi|224089887|ref|XP_002308852.1| predicted protein [Populus trichocarpa] gi|222854828|gb|EEE92375.1| predicted protein [Populus trichocarpa] Length = 215 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 18/175 (10%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAG 59 ++H+ + PA+ + +D E P R R + +QLS G I ++ Sbjct: 48 KLHQNNNPADHPL----LVGLDIE---WRPNRTRQIENPVATLQLSTGKD-CLIFQLLHC 99 Query: 60 QKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI--ASRLTRTYTNQ 116 P +L L ++ + D+ L + V + ++ A +L Sbjct: 100 PTGIPQSLYDFLSNKNYTFVGVGIEGDVEKLVEGYDVSMGNAVDLRVLAAEKLGAEQWKN 159 Query: 117 HGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 G+K +KE+LG I K S W + L+ +Q+QYA D + + Sbjct: 160 SGIKSLVKEILGKQIEKPKRVTMSRWDNEWLTGDQVQYACLDAFLCYKIGENLYA 214 >gi|170588753|ref|XP_001899138.1| 3'-5' exonuclease family protein [Brugia malayi] gi|158593351|gb|EDP31946.1| 3'-5' exonuclease family protein [Brugia malayi] Length = 573 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 17/166 (10%) Query: 39 LCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 L +V L+ V + + + +L EK K+ H + +L + + + + Sbjct: 340 LSLVVLATTMQIVVFDVVHSDTILLESGVKEILESEKIIKVIHDAKRVATLLAHRYAINL 399 Query: 98 RPVFCTKIASRLTRTY--------TNQHGLKDNLKELL-------GINISKAQQSSDWSA 142 R +F T++A + + + + + K W Sbjct: 400 RKIFDTQVAHAILQYEKFGKAVSDMRTMSFVNLRRVYYPQSIMMSDVTPRKLTHLPSWGL 459 Query: 143 DDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDLATSCCNFL 187 ++++ L + L L + L + + C L Sbjct: 460 RPITEDFLVTVVEEAHCLVTVLYRMISAMLPKHLLALFEEKCLKAL 505 >gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii] gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii] Length = 881 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 30/168 (17%) Query: 48 DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGV-RVRPVFCT 103 DG+ ++ + LV L D + K D+ L + G+ P F T Sbjct: 341 DGSAAFVQ-GEARDWPQPLVECLRDGSKLK----AVQDLKPLLLALHRQGIDMPGPYFDT 395 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV------ 157 +A L H L+ +LL + + D S S DV Sbjct: 396 MVADYLLNPNRRAHTLEAIAMDLLSYQLGAGE-REDTSKGPQS-------LFDVDEALVR 447 Query: 158 ------VHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGW 198 + E+L+ G L + AE++ G+ Sbjct: 448 RTGEAAAVTAKVAPMLRERLKEQGSLSLFQDVEMPLVPVLAEIERNGF 495 >gi|308474798|ref|XP_003099619.1| hypothetical protein CRE_22979 [Caenorhabditis remanei] gi|308266474|gb|EFP10427.1| hypothetical protein CRE_22979 [Caenorhabditis remanei] Length = 398 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 L LK ++G ISK++ S W+ +L +Q+ YAA D + LH + Sbjct: 226 SLVKMLKRVVGKEISKSETMSCWTVPELRHDQIHYAAMDAIALHYI 271 >gi|290987710|ref|XP_002676565.1| predicted protein [Naegleria gruberi] gi|284090168|gb|EFC43821.1| predicted protein [Naegleria gruberi] Length = 740 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 16/149 (10%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA----VLFYTFGVR 96 ++QLS G + K + V ++ D++ K + D+ + + + Sbjct: 586 LIQLSTGKSCLLYGTSEGKAKPSNLFVELMYDKRVIKTWCSMHEDVKLISLWIKHYNMIL 645 Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAA 154 F L +Q G ++LL + ++K Q S WS LS Q +Y+A Sbjct: 646 ENREF-----EGLIELDPSQLGASTLCEQLLSLKMAKERTVQVSRWSRFGLSKIQTKYSA 700 Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSC 183 D +L + + DL Sbjct: 701 QD-SYL----NYLLYNIVSENKEDLTQVE 724 >gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1] gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1] Length = 916 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 24/201 (11%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + + +A DTET L L + S G + +A + AP L Sbjct: 336 QAAELVAFDTETTSLNYMAAELVGLSFSVEAGEAAYVPVAHDYEGAPEQLDRDWVLEQLK 395 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 L D+ + K+ + ++D VL + + +R + + T + S + + +++H + + Sbjct: 396 PWLEDDSKAKVGQHLKYDANVL-NNYQITLRGIAYDTMLESYVYNSVSSRHDMNTLASKF 454 Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDLA 180 LG + + A + Q+ YAA D L K++ +L Sbjct: 455 LGHTCVSFEDIAGKGAKQKTFNQIDLEVAAFYAAEDADITLRLHQAIWPKIETT--PELV 512 Query: 181 ----TSCCNFLMDRAELDLLG 197 C + A+++ G Sbjct: 513 SIFKDIECPLIPVLAKMEQTG 533 >gi|308460450|ref|XP_003092529.1| hypothetical protein CRE_25898 [Caenorhabditis remanei] gi|308253105|gb|EFO97057.1| hypothetical protein CRE_25898 [Caenorhabditis remanei] Length = 418 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 39/168 (23%) Query: 22 AIAVDTETL-GLMPRRDRLCIVQLSPGDG-TVDIIRIAAGQKNAPNLVGMLVDEKREKI- 78 + +DTE + +L ++ L D TV + R+ + + ++ KI Sbjct: 145 PLYLDTEGSYSELLNGSKLALITLFDVDSRTVYLFRVHRMSYD-----QLQTIQRELKIV 199 Query: 79 --------FHYGRFD-IAVLFYTFGVRVRPVFCTKIASRLTRTYTN-------------- 115 H +D + + + R+ Sbjct: 200 AYITQELSLHRMSYDQLQTIQRELKIVANN-------RRIVSFGPETTIKCPTSNIQRHP 252 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + L+ ++ + ISK++ S+W L D+Q+QYAA D + LH + Sbjct: 253 RLSLQAAADQI-RVPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNI 299 >gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8] gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8] Length = 949 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 16/187 (8%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-----APNLVGMLVDEKREKI 78 A D E P L + S + L +L EK+ Sbjct: 381 AFDAEATSRDPMTADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGPVLA-RDTEKL 439 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI------NIS 132 H ++D+ +L +F T +A L H L D + +L ++ Sbjct: 440 GHNLKYDLLLLKQHGVEVGGTLFDTMVAHYLVAPE-ENHNLDDVARSVLNYKMVPIADLI 498 Query: 133 KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDR 190 + D S ++ E YA D + L + +L+ D+A + Sbjct: 499 GDETDRD-SMREVDVETAAPYACEDADISYRLADELEAQLEDGNVLDVAHDIEFPLVHVL 557 Query: 191 AELDLLG 197 A ++ G Sbjct: 558 ATMEHTG 564 >gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131] gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter sphaeroides KD131] Length = 695 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 53/198 (26%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-------------GDGTVDI---IRI 56 AE + + DTET GLMP +D + VQ++ D V+ I Sbjct: 487 AEARLEDLTYVVFDTETTGLMPSQDEI--VQIAAVRIVNGRRVEAEVLDTLVNPHRSIPP 544 Query: 57 AAGQ---------KNAPNLVGM------LVDEKREKIFHYGRFDIAVLFYT---FGVRV- 97 ++ + AP++V + + + H FD+ L G R Sbjct: 545 SSTEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVL-VAHNAPFDMEFLRRAEPLIGRRFD 603 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 P+ T + S + ++ H L LGI I + + + A D Sbjct: 604 NPILDTVLLSAVLFGQSDVHSLDALTHR-LGITIPEEARHT--------------AIGDT 648 Query: 158 VHLHALRLQFTEKLQRLG 175 V L+ LQ G Sbjct: 649 VATADAFLKLLPMLQGRG 666 >gi|308486518|ref|XP_003105456.1| hypothetical protein CRE_21803 [Caenorhabditis remanei] gi|308256561|gb|EFP00514.1| hypothetical protein CRE_21803 [Caenorhabditis remanei] Length = 371 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + L+ + L ISK + S+W L D+Q+QYAA D + LH L Sbjct: 206 PRLSLQAAVDRL--RPISKTETMSNWCGPQLRDDQIQYAAMDAIVLHNL 252 >gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4] gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum] gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4] Length = 1369 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 9/94 (9%) Query: 43 QLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 Q+ DG VD++ G + DE K++H FD + + G+ V+ Sbjct: 688 QVKFHDGNSRVWVDVMDDIEGDEILQVFKEYFEDESILKVWHNYAFDRHIFYNH-GINVK 746 Query: 99 PV-FCTKIASRL---TRTYTNQHGLKDNLKELLG 128 T +RL +R + + L+ KELL Sbjct: 747 GFGGDTLHMARLWNASRMNSGGYSLEALSKELLN 780 >gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] Length = 977 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 21/184 (11%) Query: 13 AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQ 60 AR D +A+DTET P RL + L+ I + Sbjct: 390 DAWLARVQAADRVAIDTETTSKDPHAARLVGISLAVTPWQGCYIPVGHNYAGVPEQLPLD 449 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119 + L L + ++K+ ++D+ VL G+ +R V T + S + + HG+ Sbjct: 450 EVLAVLKPWLESDAQQKVGQNIKYDMHVLANH-GITLRGVVDDTMLESYVLEAHRT-HGM 507 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 L ++ + A + +Q+ YAA D L ++ Sbjct: 508 DALAGRHLNRTTITYEEVAGKGAKAIGFDQVALDVATPYAAEDADVTLQLHRTLWPAIEA 567 Query: 174 LGRS 177 R Sbjct: 568 SERL 571 >gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328] gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328] Length = 945 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 20/121 (16%) Query: 21 DAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLV 67 +A DTET L PR L C G D+ I P L Sbjct: 368 KPVAWDTETTSLEPRDANLVGIGC----CWGSELSDLAYIPLNHTQGEMLNIEEVLPALR 423 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L E K +FD ++ + G+ ++ VF T +AS + + H L D Sbjct: 424 PILESENYPKTLQNAKFD-RLILRSQGITLKGVVFDTMLASYVINPES-SHNLTDLSLRY 481 Query: 127 L 127 L Sbjct: 482 L 482 >gi|195128479|ref|XP_002008690.1| GI11678 [Drosophila mojavensis] gi|193920299|gb|EDW19166.1| GI11678 [Drosophila mojavensis] Length = 279 Score = 46.9 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 17/148 (11%) Query: 34 PRRDRLC---IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR--FDIAV 88 R C ++ ++ + T + + A P L +L E KI HY D+ Sbjct: 80 SFYGRHCKTSVIVIATANNT-YVFDLKALGVIFPELCVLLEAEYPRKILHYSHRICDL-- 136 Query: 89 LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK--------ELLGINI-SKAQQSSD 139 LF+ + + V T +A + R + L+D + EL I S + + Sbjct: 137 LFHQHKLIINGVSDTFVALCVARQDRSHCTLQDAITIVLEISPTELTCHEITSANESVRN 196 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQF 167 ++A LS QL+Y A + H L Sbjct: 197 FTARPLSKSQLRYLAKLAILQHKLHDTL 224 >gi|308473681|ref|XP_003099064.1| hypothetical protein CRE_27780 [Caenorhabditis remanei] gi|308267718|gb|EFP11671.1| hypothetical protein CRE_27780 [Caenorhabditis remanei] Length = 208 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + L+ + + ISK++ S+W L D+Q+QYAA D + LH + Sbjct: 42 PRLSLQAAADRI-RVPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNI 89 >gi|302838257|ref|XP_002950687.1| hypothetical protein VOLCADRAFT_91127 [Volvox carteri f. nagariensis] gi|300264236|gb|EFJ48433.1| hypothetical protein VOLCADRAFT_91127 [Volvox carteri f. nagariensis] Length = 1036 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%) Query: 37 DRLCIVQLSPGDG--TVDIIRIAAGQKNAP--NLVGMLVDEKREKIFHY-GRFDIAVLFY 91 +L ++QL+ + I R+ + AP + +L D + D ++ Sbjct: 644 PQLAMLQLATSSRVLLLHIARMRRKEVIAPGGPIHVLLSDPSLTWVGSGWSNSDRTIVKG 703 Query: 92 TFG--VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI-NISKAQQSS--DWSADDLS 146 FG V ++A+R + GL + +LLG+ K ++ S +W+A LS Sbjct: 704 AFGGATLPPAVVDVQVAAR--AAGWGRVGLLALVNDLLGMREFQKPRKLSMCNWAAASLS 761 Query: 147 DEQ 149 + Q Sbjct: 762 ERQ 764 >gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1] Length = 927 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 56/176 (31%), Gaps = 21/176 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----------APNL 66 R +A+DTET L RL + S G + +A L Sbjct: 347 LRSAPLVALDTETTSLDEMAARLVGISFSVAPGEAAYLPLAHEDPGTAGQLPLDEVLARL 406 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKE 125 L D K + ++D VL G+ V+ V T + S + + H L+ + Sbjct: 407 RPWLEDPAAAKCGQHIKYDQHVLANH-GILVQGYVHDTMLQSYVLEVHRP-HNLESLAER 464 Query: 126 LLGINIS-------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 LG + K ++ + YA D A+ +LQ Sbjct: 465 HLGRSAMRYEDLCGKGAAQIPFARVPIERA-APYACEDAEQCLAVHQVLWPQLQAQ 519 >gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH] Length = 926 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P ++ + S G + +A + P L L D Sbjct: 352 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 412 SKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVRTI 469 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L +YAA D L ++ R Sbjct: 470 KYEDVAGKGAQQIGFDEVPLEQA-SEYAAEDADITLQLHHALYPQIARE 517 >gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] Length = 927 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 13/122 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + + +A+DTET L R + + S G I +A +AP L Sbjct: 348 QGAELVALDTETTSLDELRAEIVGLSFSVEPGAAAYIPLAHSGPDAPEQLPLDAVLERLK 407 Query: 68 GMLVDEKREKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 L D R K+ + ++D V + GVR V T + S + + H L + Sbjct: 408 PWLEDGSRAKLGQHVKYDRHVFANHDIGVRGY-VHDTMLQSYVLEVHKP-HNLASLAERH 465 Query: 127 LG 128 G Sbjct: 466 TG 467 >gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264] gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264] gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264] Length = 926 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P ++ + S G + +A + P L L D Sbjct: 352 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 412 SKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVRTI 469 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L +YAA D L ++ R Sbjct: 470 KYEDVAGKGAQQIGFDEVPLEQA-SEYAAEDADITLQLHHALYPQIARE 517 >gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH 391-98] Length = 299 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 40/149 (26%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDII---------------- 54 + + +D ET G P DR+ +Q++ D V + Sbjct: 7 PANYVVIDFETTGFHPYNDRI--IQVAAVRYRNHELADQFVSFVNPERSIPSRITSLTGI 64 Query: 55 ------RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT-----FGVRVRPVFCT 103 Q+ P + L ++ + H FD+ L G V T Sbjct: 65 TNYRVSDAPTVQEVLPLFLAFLGNDTI--VAHNASFDMRFLKSNMSRFQLGEPNNKVIDT 122 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINIS 132 + ++ + L+ K +LGI +S Sbjct: 123 VLLAKKYMKHAPNFKLETL-KRMLGIRLS 150 >gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4] Length = 926 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P ++ + S G + +A + P L L D Sbjct: 352 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 ++K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 412 SKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVRTI 469 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L +YAA D L ++ R Sbjct: 470 KYEDVAGKGAQQIGFDEVPLEQA-SEYAAEDADITLQLHHALYPQIARE 517 >gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB] gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB] Length = 906 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 19/168 (11%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAP------NLVGMLVDE 73 A+DTET L R+ + LS G I +A P L L Sbjct: 332 ALDTETTSLDSFAARIVGISLSVTPGEACYIPLAHTAPGVADQLPREEVLARLKSWLESA 391 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +K+ ++D V G+ + + T + S + + H L LG+ Sbjct: 392 AHKKVLQNAKYDQHVFANH-GIALSGIAHDTMLQSYVIES-DKGHDLGQLCTRHLGLATI 449 Query: 133 KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 + A ++ +Q+ YAA D + + Sbjct: 450 AYEDLCGKGAKQITFDQVDIERAATYAAEDSDVTLRVHNVLHPQFASE 497 >gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1] gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens MI-1] Length = 930 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 32/149 (21%) Query: 20 VDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT-----------VDIIRI-------AA 58 ++ +A+D ET GL +D + +V++ G + ++I Sbjct: 2 LNFVALDLETSGLDCLQDEIIEIGLVKMVDGKEIDSFSTLIRPKGILPVKIKRLTGIKDH 61 Query: 59 GQKNAPNLVGMLVDEKREK-------IFHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLT 110 ++AP L +L + + H +FD L P++ T S+ Sbjct: 62 ELQDAPKLQEVL--PVILQFIADLPLVGHNVKFDYDFLSTAVQSPLANPLYDTLELSKYL 119 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 + H L LGI+I ++ D Sbjct: 120 MPGASNHRLGYLCS-YLGIDIPNQHRALD 147 >gi|123496823|ref|XP_001327045.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] gi|121909969|gb|EAY14822.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] Length = 478 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 14/155 (9%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 IA+D E R++ + + QL G + I R +GQKN + + K Sbjct: 76 KPIALDLE-WNPFTRQNGVNLFQLCTSRGCLLIHR-RSGQKNDEFFEFLKTHQFFMK--- 130 Query: 81 YGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKEL-----LGINISKA 134 D +L TFG V +A+++ R + + + G +K Sbjct: 131 DISNDYPMLQTTFGKNFPFQVCD--VAAQILRPEKKSEKFEKMVVQFSHLKPTGKFKNKK 188 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 S W +L+ Q+ YAA D V L+A +F + Sbjct: 189 ISRSKWD-RNLNPRQILYAAFDAVGLYACLEEFQK 222 >gi|308471995|ref|XP_003098227.1| hypothetical protein CRE_12172 [Caenorhabditis remanei] gi|308269378|gb|EFP13331.1| hypothetical protein CRE_12172 [Caenorhabditis remanei] Length = 391 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + L+ ++ + ISK++ S+W L D+Q+QYAA D + LH + Sbjct: 225 PRLSLQAAADQI-RVPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNI 272 >gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE] gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE] Length = 903 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 19/133 (14%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 + + + L + D +R K+ H + + V T +A+ L + Sbjct: 372 LDPAELDEADEQALAAWIADPRRPKVMHNAKNALRVFPEQGWRLEGVSMDTALAAYLVKP 431 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLHA 162 L E LG + + +D QL + A D + Sbjct: 432 GRRSFALDALAVEYLGREL---------APAPSADGQLAFGADDRAEADALMAQARAVLD 482 Query: 163 LRLQFTEKLQRLG 175 L F +L+ +G Sbjct: 483 LGEAFAVRLEEVG 495 >gi|17509559|ref|NP_493422.1| hypothetical protein W04A8.4 [Caenorhabditis elegans] gi|3880478|emb|CAB04908.1| C. elegans protein W04A8.4, confirmed by transcript evidence [Caenorhabditis elegans] Length = 129 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 107 SRLTRTYTNQ--HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD--VVHLHA 162 S+ RT + LK G+++ K + SDW+ L +QL+YA D V+HL Sbjct: 41 SKFVRTNGTRSLLSLKAEATYWTGLDLHKGETMSDWTNTHLRGDQLRYAIMDTIVMHLI- 99 Query: 163 LRLQFT 168 ++ + Sbjct: 100 IKQRLR 105 >gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 326 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 69/235 (29%), Gaps = 71/235 (30%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---------------------Q-- 43 + + R+ +AV D E+ G DR+ +V Q Sbjct: 9 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPKKPIPQFV 68 Query: 44 -----LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GV 95 +S G ++ + A L +L + I H RFD L + F G+ Sbjct: 69 AELTGISDG----MVVDAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGI 122 Query: 96 -RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 P C+ SR +H L ++ LGI + + A Sbjct: 123 GFSSPALCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AM 165 Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 +DV AL L G + C L +R L G + Sbjct: 166 ADVS---ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217 >gi|289621755|emb|CBI51666.1| unnamed protein product [Sordaria macrospora] Length = 645 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 34/184 (18%) Query: 21 DAIAVDTE--TLGLMPRRDR--LCIVQLSPGD--GTVDI-IRIAAGQKNAPNLVGMLVDE 73 + +D E R + ++Q++ G I + + +P L ++ D Sbjct: 179 KILGLDLEWEANAKPTHGPRQNVSVIQIASEKRIGIFHISLYPKKDELGSPLLKQIIEDP 238 Query: 74 KREK----IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL----------TRTYTNQHG- 118 K I L G++ R + + S L N+ G Sbjct: 239 DVIKTGVWILGDCTR----LEKFLGIKGRGI---QELSHLYKLVKYSASGEHKLVNRMGV 291 Query: 119 -LKDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK--LQRL 174 L + E+L + + K ++S WS L+ +Q+ Y+ASD L ++ ++ Sbjct: 292 PLARMVNEILQLPMFKGSVRTSAWSK-PLNMDQILYSASDAYAGLKLPIRLAADVIVEEA 350 Query: 175 GRSD 178 G D Sbjct: 351 GLLD 354 >gi|3298537|gb|AAC25931.1| hypothetical protein [Arabidopsis thaliana] Length = 217 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 26/143 (18%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD---IAVLFYTFGVRVR 98 +QL G II+++ + L L D+ + + D + + + Sbjct: 85 LQLCVG-TRCLIIQLSHCKYVPDVLRSFLEDQTITFVGVWNSQDKDKLERFHHQLDIW-- 141 Query: 99 PVFCTKIASRLTRTYTNQH------GLKDNLKELLG---INISKAQQSSDWSADDLSDEQ 149 RL H + +K LG + K S+W A LS +Q Sbjct: 142 ---------RLVHIRHYLHPLLLSSSFETIVKVYLGHEGVTKDKELCMSNWGARSLSHDQ 192 Query: 150 LQYAASDVVHLHAL--RLQFTEK 170 + A+ DV L + + + Sbjct: 193 IVQASHDVYVCCKLGVKERLWKM 215 >gi|297606613|ref|NP_001058743.2| Os07g0112400 [Oryza sativa Japonica Group] gi|255677453|dbj|BAF20657.2| Os07g0112400 [Oryza sativa Japonica Group] Length = 768 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 10/131 (7%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG-RFDIAVLFYTFGV 95 R +QL G + ++A G L L D YG R D L G+ Sbjct: 627 PRPGTLQLCVGS-RCLVFQVAQGNAFPAALRRFLADGGVAAFVGYGIRSDCRKLAAHHGL 685 Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI-NISK--AQQSSDWSADDLSDEQLQY 152 V CT+ +T ++ +ELLG+ I K A S W A LS +Q++Y Sbjct: 686 HVA---CTRELRAVTGMGSSSM--ARMAEELLGLAGIKKPAAVGRSRWDAPKLSKKQVKY 740 Query: 153 AASDVVHLHAL 163 A D H L Sbjct: 741 ACVDAFLSHRL 751 >gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92] gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92] Length = 879 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 24/192 (12%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP-----NLVGMLVDEKREK 77 IA DTET + + +L D + +A AP + V + K Sbjct: 319 IAFDTETTDIDTQSAKLVGFSFCFNDENAYYVPVAHSYLGAPKQVGTDFAAWAV-GQIYK 377 Query: 78 ---IFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + ++D V+ G+ F T + + L + G+ K L + K Sbjct: 378 GCVVGQNLKYDFKVVKRNLGLEPPVKFKDTMVLAWLADP-SQAVGMDALAKRLYNYDTIK 436 Query: 134 AQQSSDWSAD-------DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCN 185 D L + +YAA D F L +LA + Sbjct: 437 ---FEDVVRRGETFASVPLENA-AKYAAEDAWITLKFYKSFLNLLDPA-LIELANAHEFP 491 Query: 186 FLMDRAELDLLG 197 F++ +++ +G Sbjct: 492 FILTLFDMESVG 503 >gi|85106391|ref|XP_962175.1| hypothetical protein NCU07036 [Neurospora crassa OR74A] gi|28923773|gb|EAA32939.1| predicted protein [Neurospora crassa OR74A] Length = 232 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 20/156 (12%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 + L +L D K R D L+ +R+ V ++ +R Sbjct: 67 FTTPGPDGKTLKTILEDPHTSKCLWDVRNDADALWAHHKIRLAGVTDIQLLENGSRPGGK 126 Query: 116 QH--GLKDNLKELLGINIS--------KAQQS-------SD-WSADDLSDEQLQYAASDV 157 + GL +++ L + K + SD +S L + LQY +DV Sbjct: 127 TYLFGLDRCIEKDLSLRWEEKQPWARTKQEVRALMNMPNSDIFSRRPLDAKTLQYCVNDV 186 Query: 158 VHLHALRLQFTEKLQR--LGRSDLATSCCNFLMDRA 191 V+L AL +T+++ + G + A + A Sbjct: 187 VYLPALHNLYTKRINKYGSGWLEKAMVESARRVTEA 222 >gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1438 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 64/198 (32%), Gaps = 54/198 (27%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 P +C + + D ET GL + D+ L V++ G+ I + L Sbjct: 412 PKDCDLKTATYVVFDVETTGLSNQYDKIIELAAVKVKDGE---IIDKFERFSNPHERLSE 468 Query: 69 -----------MLVD-EKREKIF--------------HYGRFDIAVL-----FYTFGVRV 97 MLVD + E++ H FD+ + G Sbjct: 469 TIKNLTHISDDMLVDAPEIEEVLTEFKSWVGDAIFVAHNASFDMGFIDTGYEHVGIGAST 528 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 V T SR T +HGL K+ G+ +++ + A D Sbjct: 529 NGVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDT 571 Query: 158 VHLHALRLQFTEKLQRLG 175 + ++ ++L+ LG Sbjct: 572 EATAYMFIKMLKQLEALG 589 >gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] Length = 879 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 41/222 (18%) Query: 2 TTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIR 55 T+ + E + + + IA DTET GL R ++ C+ + + Sbjct: 297 ATLILDENTLFDKLESLESESIIAFDTETTGLNAREAKIVGFSFCV-----SENEAFYVP 351 Query: 56 IAAGQKNAPNLVGMLVDEKRE-------KIFHYGRFDIAVLFYTFGVRVRPVF-CTKIAS 107 + P+ + M ++ I H ++D A++ F + + T I + Sbjct: 352 LNHTYLAVPSQISMQTAKRALGQIYSHFIIGHNLKYDFAIIENNFKLTPPKKYADTMILA 411 Query: 108 RLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDV--- 157 L + + + D L + K + ++++ +L YAA D Sbjct: 412 WL-YNPSLRVNMDDLALRLFDYKTLHFESVVKKGE---NFASVELEKA-CNYAAEDAYIT 466 Query: 158 --VHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 +L+ L+ L +LG S NF+ +++ G Sbjct: 467 LRFYLYFLKN-LEPNLLKLG----FESEFNFIEVLRKMEQSG 503 >gi|22831296|dbj|BAC16150.1| hypothetical protein [Oryza sativa Japonica Group] gi|24414042|dbj|BAC22291.1| hypothetical protein [Oryza sativa Japonica Group] Length = 752 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 10/131 (7%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG-RFDIAVLFYTFGV 95 R +QL G + ++A G L L D YG R D L G+ Sbjct: 611 PRPGTLQLCVGS-RCLVFQVAQGNAFPAALRRFLADGGVAAFVGYGIRSDCRKLAAHHGL 669 Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI-NISK--AQQSSDWSADDLSDEQLQY 152 V CT+ +T ++ +ELLG+ I K A S W A LS +Q++Y Sbjct: 670 HVA---CTRELRAVTGMGSSSM--ARMAEELLGLAGIKKPAAVGRSRWDAPKLSKKQVKY 724 Query: 153 AASDVVHLHAL 163 A D H L Sbjct: 725 ACVDAFLSHRL 735 >gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110] gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110] Length = 940 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 13/115 (11%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEK 74 +DTET L R+ V S G + +A +AP L L + Sbjct: 368 IDTETTSLDEMVARIVGVSFSIEPGAAAYVPLAHNYPDAPAQLPFDEVLARLKPWLENPA 427 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++K+ + ++D V G+ V+ T + S + + HGL + LG Sbjct: 428 KKKLGQHIKYDRHVFANH-GIEVQGYAHDTMLQSYVLEAHRP-HGLASLAERHLG 480 >gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum] gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum] Length = 1334 Score = 46.5 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 VD++ G+ DE K++H FD + + + V+ T +RL Sbjct: 670 VDVMDDINGEAVLQEFKEYFEDESILKVWHNYAFDRHIFYNH-NINVKGFGGDTLHMARL 728 Query: 110 ---TRTYTNQHGLKDNLKELLGIN 130 R + + L+ +ELL Sbjct: 729 WNAARQNSGGYSLEALCRELLNKT 752 >gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 870 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 L ++ +E+ KI H G+ + + + ++ F T IA+ L + + + L + Sbjct: 369 LKAIMENEELTKIIHDGKS-LVTVLNKLDISIKTFEFDTAIAAYLIDSARSSYDLLTLIN 427 Query: 125 ELLGINI 131 E LG +I Sbjct: 428 EYLGEDI 434 >gi|302836520|ref|XP_002949820.1| hypothetical protein VOLCADRAFT_90238 [Volvox carteri f. nagariensis] gi|300264729|gb|EFJ48923.1| hypothetical protein VOLCADRAFT_90238 [Volvox carteri f. nagariensis] Length = 625 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 113 YTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 Y ++ L + +L ++ K + + +W L Q +Y A D A+ + Sbjct: 504 YRSRWSLAALVATVLKRHLPKPNSLRCGNWERRPLDAAQKRYGALDAYAGLAVWAALSR 562 >gi|326498999|dbj|BAK05990.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 212 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 12/153 (7%) Query: 23 IAVDTETLGLMPRRDR----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +D E P R + ++QL G I ++ L L D + Sbjct: 48 VGLDVE---WRPSFGRAQNPVALLQLCVG-RRCLIFQLLHADFIPLALRRFLADPDFRFV 103 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 + D+ L G+ V V + A + R + Q GLKD ++G N+ K ++ Sbjct: 104 GVGVQNDVDRLNDDHGLEVANVVDLRSLAADEMRRPWLRQAGLKDVAGVVMGANLHKPRR 163 Query: 137 SS--DWSADDLSDEQLQYAASDVVHLHALRLQF 167 + W A LS EQ+QYA D + + Sbjct: 164 VTMGPWDACRLSQEQIQYACIDAFVSFEVGRKL 196 >gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] Length = 879 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 22/187 (11%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75 IA DTET GL + ++ + + + + + +K Sbjct: 313 LDKESIIAFDTETTGLDAKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAI 372 Query: 76 EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E IF H ++D ++ F + + T I + L + + + + D L Sbjct: 373 ELIFNHFVIGHNLKYDFKIIQNNFNLTLPQEYADTMILAWL-KNPSLRVNMDDLALRLFN 431 Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + K + + + +L +YAA D L F + L+ +LA Sbjct: 432 YETLHFESLVKKGENFT---SVELEKA-CKYAAEDAYITLRFYLYFLKNLE-TPLLELAK 486 Query: 182 SC-CNFL 187 +C +F+ Sbjct: 487 TCEFDFI 493 >gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05] Length = 970 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 29/141 (20%) Query: 22 AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDI--IRIAAGQ-------KNAPNLVG 68 +A DTET L PR L C G+ DI I IA Q + L Sbjct: 381 PVAWDTETTALNPREAELVGIGC----CWGNKPTDIAYIPIAHKQGKQLRKEQVLDRLQS 436 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELL 127 +L K+F +FD + + G+ + V T +AS + H L + ++ L Sbjct: 437 ILESNNYPKVFQNTKFDRLIFKHQ-GINLDGVVLDTMLASYVLHPE-KSHKLSELCEQYL 494 Query: 128 ---------GINISKAQQSSD 139 + I K Q +D Sbjct: 495 EGITSLDYKDLGIGKKQTIAD 515 >gi|153840366|ref|ZP_01993033.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149745971|gb|EDM57101.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 166 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 12/122 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 29 LKAAELFAFDTETDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 88 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D+ + K+ ++D +VL G+ ++ + + T +AS + + +H + Sbjct: 89 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALR 147 Query: 126 LL 127 L Sbjct: 148 FL 149 >gi|325090671|gb|EGC43981.1| 3'-5' exonuclease/helicase [Ajellomyces capsulatus H88] Length = 935 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 15/110 (13%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQK-------NAPNLVGMLVDEKREKIFHYGRFDIAVLFY 91 + ++QL+ + I +A +P L +L K+ R D L+ Sbjct: 787 VSVIQLAS-KERIAIFHLALFNPANSLQHLLSPTLKRILESPDIVKVGVAIRADCTRLYK 845 Query: 92 TFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKELLGINISKA 134 G+R + ++ + + N L ++E LG+ + K Sbjct: 846 FLGIRTNNICEVSRLHKVVKHHLNPKLIDKRLVNLAQQVEEHLGLPLDKD 895 >gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114] gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114] Length = 463 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 61/212 (28%), Gaps = 50/212 (23%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRL---CIV-----------QL-----SPGDGTV 51 + + + VD ET G +DR+ +V QL S + Sbjct: 10 LSEAFSRLGRPVVVVDLETTGGNSYQDRITEVALVRFEQGRTTHYEQLVNPCRSIPEFVA 69 Query: 52 DIIRI-AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPVF 101 + I KNAP + D + + H RFD L + F P Sbjct: 70 RLTEIHDETVKNAPVFADIAGDLLPLLQGAVVVAHNSRFDYTFLRHEFARIHTDFAAPSL 129 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 CT SR +H L ++ GI + + A +DVV Sbjct: 130 CTVQLSRRLYPEFYKHSLDSIIER-TGIQTANRHR----------------AMTDVV--- 169 Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 AL L LM+ L Sbjct: 170 ALCDYLELSLAEKNHQQW-DEHVRVLMNPKML 200 >gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] Length = 911 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 12/122 (9%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 D +A DTET L R + + + GT + +A +A L Sbjct: 330 DKADRVAFDTETTSLDAMRAEIVGMSFAFEPGTAWYLPLAHTGPDADPQLPRAETLERLK 389 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKEL 126 L E+ K+ H+ ++D VL G+ +R + T + S N+H L + Sbjct: 390 PWLESERHGKLGHHLKYDRNVLGNH-GITLRGIVDDTLLESFCLDAGANRHDLDSLAERH 448 Query: 127 LG 128 L Sbjct: 449 LD 450 >gi|121635139|ref|YP_975384.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18] gi|120866845|emb|CAM10604.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18] gi|325132197|gb|EGC54893.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190] gi|325138130|gb|EGC60703.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis ES14902] gi|325198587|gb|ADY94043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136] Length = 470 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 69/229 (30%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 18 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 V + I+ G +AP + + K + H RFD L + F G+ PV Sbjct: 78 VGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPV 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|12718307|emb|CAC28658.1| related to WERNER SYNDROME HELICASE [Neurospora crassa] Length = 699 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 24/161 (14%) Query: 34 PRRDR--LCIVQLSPGD--GTVDI-IRIAAGQKNAPNLVGMLVDEKREK----IFHYGRF 84 R + ++Q++ G I + + +P L ++ D K I Sbjct: 199 SHGPRQNVSVIQIASEKRIGIFHISLYPRKDELASPLLKQIIEDADVVKAGVWIMGDCTR 258 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKAQ 135 L G+ + ++ +L + + L +KE+L + + K Sbjct: 259 ----LKTFLGIEAKGIYELSHLYKLVKYSASGEHKLVNRRLVPLATLVKEVLQLPMFKGA 314 Query: 136 -QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 ++S+WS L+ +Q+ Y+ SD L + ++L Sbjct: 315 VRTSEWSK-PLNMDQILYSGSDAYAGVQLFAMMDHQRKQLN 354 >gi|85101232|ref|XP_961112.1| hypothetical protein NCU03765 [Neurospora crassa OR74A] gi|28922651|gb|EAA31876.1| hypothetical protein NCU03765 [Neurospora crassa OR74A] Length = 699 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 24/161 (14%) Query: 34 PRRDR--LCIVQLSPGD--GTVDI-IRIAAGQKNAPNLVGMLVDEKREK----IFHYGRF 84 R + ++Q++ G I + + +P L ++ D K I Sbjct: 199 SHGPRQNVSVIQIASEKRIGIFHISLYPRKDELASPLLKQIIEDADVVKAGVWIMGDCTR 258 Query: 85 DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKAQ 135 L G+ + ++ +L + + L +KE+L + + K Sbjct: 259 ----LKTFLGIEAKGIYELSHLYKLVKYSASGEHKLVNRRLVPLATLVKEVLQLPMFKGA 314 Query: 136 -QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 ++S+WS L+ +Q+ Y+ SD L + ++L Sbjct: 315 VRTSEWSK-PLNMDQILYSGSDAYAGVQLFAMMDHQRKQLN 354 >gi|298710210|emb|CBJ26285.1| Chain A, Structure Of Mouse Wrn Exonuclease Domain pdb|2E6M|A Chain A, Structure Of Mouse Werner Exonuclease Domain [Ectocarpus siliculosus] Length = 249 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 1/106 (0%) Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 L +L D K D + GV++ ++ + T+ L Sbjct: 51 PLKALLEDPSIIKAGVAINTDATHMLNDNGVKMASTVDLRVLAVSKLVVTSSRTLAGLTA 110 Query: 125 ELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 LLG + K + S W + LSDEQ YA D V L + Sbjct: 111 CLLGRQLLKDTVRCSRWGSPRLSDEQRDYAIRDAVASALLYEAIHK 156 >gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH820] gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus AH820] Length = 315 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 38/148 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60 +D + +D ET G P D++ +Q++ VD RI + Sbjct: 7 PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGI 64 Query: 61 -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104 +AP L + + H FD+ L + P V T Sbjct: 65 TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ + + L+ K +LGI +S Sbjct: 124 FLAKKYMKHAPNYKLETL-KRMLGIRLS 150 >gi|221059461|ref|XP_002260376.1| 3'-5' exonuclease [Plasmodium knowlesi strain H] gi|193810449|emb|CAQ41643.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H] Length = 1124 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 4/139 (2%) Query: 33 MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT 92 R ++ + + I + +K L + D KI + + I V+ Sbjct: 513 NTYRGFTSLILVGTEECDYIIDTLYMFEKIH-ELNDITTDPNILKILYKSKNIIPVMQKD 571 Query: 93 FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 F + + + S + ++ L + +N++ A + LS + + Sbjct: 572 FSIYFVNMIDISVCSDFL---SVRNSLHYLVHNYFHVNVNSAGNGLNALTRPLSPDLVSN 628 Query: 153 AASDVVHLHALRLQFTEKL 171 +L+ L L Sbjct: 629 LRMPFHYLYYLFEYVKTDL 647 >gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1] gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1] Length = 927 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 13/122 (10%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67 + D +A+DTET L R ++ + S G I +A AP L Sbjct: 348 QAADLVALDTETNSLDELRAQIVGLSFSVEPGAAAYIPLAHSGPEAPEQLPLDTVLERLK 407 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 L D R K+ + ++D V G+ VR T + S + + H L + Sbjct: 408 PWLEDASRPKLGQHVKYDRHVFANH-GIDVRGYAHDTMLQSYVLEVHRP-HNLASLAERH 465 Query: 127 LG 128 G Sbjct: 466 TG 467 >gi|238482067|ref|XP_002372272.1| 3-5 exonuclease, putative [Aspergillus flavus NRRL3357] gi|220700322|gb|EED56660.1| 3-5 exonuclease, putative [Aspergillus flavus NRRL3357] Length = 382 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 24/151 (15%) Query: 39 LCIVQLSPGDGTVD----IIRIAAGQKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYT 92 + ++QL+ + R A G ++ P L +L K + D L Sbjct: 237 VSLIQLASSRRIALFHIAMFRPARGAEDLVPPTLKRILESPDVIKAGVSIKADCTRLRKY 296 Query: 93 FGVRVRPVFCTKIASRLTRTYTNQHG--------LKDNLKELLGINISKA--QQSSDWSA 142 G+ R +F +L + + G L ++E GI ++K + SDW++ Sbjct: 297 LGIETRGIFELSHLYKLVKYSQSNPGLVNKRTVNLSAQVEEHFGIPLAKDVEVRCSDWAS 356 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 L Y S V L +L R Sbjct: 357 A------LDY--SQVHCQLYLFPNVKNRLTR 379 >gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685] gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685] Length = 930 Score = 46.1 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 28/191 (14%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 E A I +DTET L L + ++ G I + AP Sbjct: 335 TTEAQFAALLDKLSRAGKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 394 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L + +KI ++D V + + + + +AS + ++ Sbjct: 395 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-DIALNGIAGDSMLASYIIESH 453 Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 HGL + + LG+ +K +D + ++ Y A D L Sbjct: 454 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YTAQDADFALRL 508 Query: 164 RLQFTEKLQRL 174 ++ Sbjct: 509 EAHLRAQMDAK 519 >gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] Length = 881 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 27/190 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-------KNAPNLVGM 69 + D A+DTET L R L + ++P G + +A + L + Sbjct: 277 LQNSDGYAIDTETDSLDYMRANLVGISVAPAPGEAYYLPLAHQLSANLPYAETLTRLKPL 336 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLG 128 L K + ++D + G+ +R + T + S + +H L D L Sbjct: 337 LEASAPPKSGQHHKYDRHIFARA-GIELRGIKDDTMLMSYTIDSTATRHNLDDLADYYLN 395 Query: 129 INISKAQQSSDW------SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGR 176 Q++ + A L+ +Q+ YA D L+ KL + + Sbjct: 396 ------HQTTTFEDIAGKGAKQLTFDQIPLETATAYACEDADITLRLKNHLAPKLAAVPQ 449 Query: 177 SDLATSCCNF 186 D Sbjct: 450 LDALYRELEM 459 >gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43] Length = 926 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 21/169 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P ++ + S G + +A + P L L D Sbjct: 352 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPLAHRGPDLPAQLPRDEVLAKLTPWLEDA 411 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 R+K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 412 SRKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 469 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 K Q + L +YAA D L ++ R Sbjct: 470 KYEDVAGKGAQQIGFDEVPLDKA-SEYAAEDADITLQLHRALYPQVARE 517 >gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314] Length = 904 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 28/149 (18%) Query: 7 HEGDIPAECAARYVDAIAVDT----ETLGLMPRRDRLCI---------------VQLSPG 47 +G+IP E A D + VDT E L R L + + + Sbjct: 310 TDGEIPVE-AVENRDEVGVDTLPLDEWLSTRRGRP-LAVAVTGVGTPATGDAHSIAIVDT 367 Query: 48 DGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFG--VRVRPV-FCT 103 D + +A A L G L DE K+ H + AV G +R + T Sbjct: 368 DRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELRGIEHDT 424 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINIS 132 IA+ L R + L D + L ++ Sbjct: 425 AIAAYLLRPGQRTYELADVYQRHLQRQLN 453 >gi|148227398|ref|NP_001083214.1| exonuclease 3'-5' domain containing 2 [Xenopus laevis] gi|37748547|gb|AAH59966.1| MGC68561 protein [Xenopus laevis] Length = 511 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 44 LSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ G ++R+ + L+ +L + K+ D + L +G+ V+ Sbjct: 1 MASFSGFCVLVRLPQLTSSGCTIPKTLLELLANSSVLKVGVGCWEDSSKLLNDYGLSVKG 60 Query: 100 VFCT-KIASRLTRTYT-NQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQ 149 +A R R N LK + +L + K+ Q S+W ++L+ +Q Sbjct: 61 CVDIRYLAMRHRRDILQNTLSLKSLSETILSFPLDKSFQLRCSNWDVEELTQDQ 114 >gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314] Length = 945 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 28/149 (18%) Query: 7 HEGDIPAECAARYVDAIAVDT----ETLGLMPRRDRLCI---------------VQLSPG 47 +G+IP E A D + VDT E L R L + + + Sbjct: 351 TDGEIPVE-AVENRDEVGVDTLPLDEWLSTRRGRP-LAVAVTGVGTPATGDAHSIAIVDT 408 Query: 48 DGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFG--VRVRPV-FCT 103 D + +A A L G L DE K+ H + AV G +R + T Sbjct: 409 DRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELRGIEHDT 465 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINIS 132 IA+ L R + L D + L ++ Sbjct: 466 AIAAYLLRPGQRTYELADVYQRHLQRQLN 494 >gi|82793920|ref|XP_728231.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23484482|gb|EAA19796.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 1841 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 21/44 (47%) Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +++K Q +W+ LS + L+YA DV+ L KL Sbjct: 1790 DKDVNKEYQIINWNFRPLSFKSLEYAILDVLILKKFYNLIQSKL 1833 >gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1] gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1] Length = 947 Score = 45.8 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 21/168 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A+DTET L R + + LS G I + +AP L L D Sbjct: 374 ALDTETTSLDEMRAEIVGISLSVEPGAAAYIPLRHAGPDAPEQLPADEVLQRLKPWLEDA 433 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGIN-I 131 R K+ + ++D V G+ V V T + S + + HGL I Sbjct: 434 ARPKLGQHVKYDRHVFANA-GIEVHGYVHDTMLQSYVLEVHRP-HGLASLALRHTNRTGI 491 Query: 132 S------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 S K ++ + YA D + +LQ Sbjct: 492 SYEDLCGKGAHQIPFAQVPVDKA-AAYACEDADQTLDVHRVLWPQLQA 538 >gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX] gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX] Length = 929 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 5/122 (4%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGM 69 + AE AA +A+ E G D + + L+ G + + L Sbjct: 354 LAAEIAAGARTGVAL--EWSGERDG-DIIRL-ALAVPSGRAVCLDPTQLDPADEAALTAW 409 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 L D K+ H ++ + L+ T IA+ L L LG Sbjct: 410 LADPAYPKVLHGVKWALRALWARGWTLDGVESDTAIAAYLLEPGRRNFELATLCLRYLGR 469 Query: 130 NI 131 + Sbjct: 470 EL 471 >gi|226954027|ref|ZP_03824491.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244] gi|226835238|gb|EEH67621.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244] Length = 84 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 5/87 (5%) Query: 1 MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 M + D+ + A+DTE + + +L + Q+ DG V ++ Sbjct: 1 MFQFIQQQEDLAVLLHKMEHCSTYALDTEFIKVDTLYPKLGVCQI-NLDGQVALLD--GT 57 Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDI 86 + + + + + + IFH DI Sbjct: 58 VLDLTHFWDKVFNAQ-QNIFHACSEDI 83 >gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia] Length = 858 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111 I A DEK KI+H FD + G+ VR F T +RL Sbjct: 118 IDNFAQNSDLIMLFKEYFEDEKILKIWHNYGFDKHIFGNN-GINVRGFFGDTMHMARLLD 176 Query: 112 T--YTNQHGLKDN-LKELLGINISKAQQ 136 ++ L L I + K ++ Sbjct: 177 PSKQPQEYSLAKLSLAYEEEIKLVKTKR 204 >gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis 108] gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor hydrothermalis 108] Length = 1402 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 51/205 (24%) Query: 22 AIAVDTETLGLMPRRDRLCIV--------QLS-------PGDGTV------------DII 54 + VD ET G +RDR+ + Q++ +G + D++ Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITEKFSTFVDPEGKIPVRISELTGIYQDMV 449 Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRLT 110 A +A + H +FDI L + G+ T SR Sbjct: 450 DKAPKLSDAILEFEKFASGSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELSRRL 508 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 T + H L + E L + + K +D SD + + E+ Sbjct: 509 LTDLSSHKLNK-VAEFLNVEL-KHHHRAD---------------SDAETTAGIFISLVER 551 Query: 171 LQRLGRSDLATSCCNFLMDRAELDL 195 L+ G N + A+ DL Sbjct: 552 LKARG-YKWLK-ELNSIESNAKADL 574 >gi|189194097|ref|XP_001933387.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978951|gb|EDU45577.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 477 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 22/110 (20%) Query: 62 NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----------- 110 AP+L ++ + K + D+A L FG++ R A L+ Sbjct: 115 LAPSLRKIIENRDIVKTGYSIIGDLARLRKHFGLQPRG------AMELSYLNVLINEERM 168 Query: 111 --RTYTNQHGLKDNL-KELLGINISKAQ-QSSDWSADDLSDEQLQYAASD 156 +TY + G+ + + G + K Q DW + ++ YAA+D Sbjct: 169 NFKTYYTKGGMGGLVNEHFHGYTLIKDSGQRKDWLS-PMTANMKSYAAAD 217 >gi|154315768|ref|XP_001557206.1| hypothetical protein BC1G_04456 [Botryotinia fuckeliana B05.10] gi|150846852|gb|EDN22045.1| hypothetical protein BC1G_04456 [Botryotinia fuckeliana B05.10] Length = 307 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 70/193 (36%), Gaps = 31/193 (16%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDII-------RIAAGQKNAPNLVGMLV 71 ++ +D E + + + + I+Q+ P T + + + L +L Sbjct: 87 PSVYIDLEGVDIGR-KGSIAILQVYILPTKRTFLVDVHNLRGQAFSTPNSSGLTLKAILE 145 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--GL-----KDNLK 124 K+ R D L+ FG++++ V ++ TR+++ + GL +D ++ Sbjct: 146 SIFIPKVIFDVRNDSDALYSHFGIKLQGVIDLQLMELATRSHSQKFLSGLGRCMDQDLVQ 205 Query: 125 --ELL---------GINI---SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 E L G+ + K + ++ L + Y DV + L + K Sbjct: 206 TPEELEVRSSIKKRGVQLFAPEKGGRYEVFNDRPLDPAIVDYCVQDVQLMPQLWDIYNAK 265 Query: 171 LQRLGRSDLATSC 183 L + + A Sbjct: 266 LSLMDKRWAAKIE 278 >gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] Length = 908 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 10/129 (7%) Query: 9 GDIPAECAAR-YVDAIAVDT--ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65 G + A +AR I V E RL + L+ + A + + Sbjct: 330 GQLAAWLSARAGTGRIGVAATGEF---KHGAGRLSGLALASDGHHAWLDPSALDEADENA 386 Query: 66 LVGMLVDEKREKIFHYG-RFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNL 123 L L D K H RF +A + G + V T +A+ L R L+ Sbjct: 387 LAAWLADPTATKAVHDAKRFGLAC--RSHGWNLDGVTSDTALAAYLVRPDLKSDSLEALA 444 Query: 124 KELLGINIS 132 LG ++ Sbjct: 445 TRYLGRELN 453 >gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella vestfoldensis SKA53] gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella vestfoldensis SKA53] Length = 469 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 74/210 (35%), Gaps = 51/210 (24%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDR------LCIV--QLSPGDGTVD 52 MTT R DI + R + + DTET G +P +D L +V Q +PG+ Sbjct: 257 MTT-RTETRDI-QDVPLRDLTYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDL 314 Query: 53 IIRI---------------AAGQKNAPNLVGM------LVDEKREKIFHYGRFDIAVLFY 91 ++ A K+AP++V + + H FD++ Sbjct: 315 LVNPGRAIPASSTAVHRITDAMVKDAPDMVHAGRKFHSFARDAVL-VAHNAPFDLSFFHR 373 Query: 92 TF---GVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSD 147 G++ PV T + S + T H L + K LGI + + + Sbjct: 374 YAPKIGMKFDHPVLDTVLLSAVLFGITEGHTLDELAKR-LGIELLDKHRHT--------- 423 Query: 148 EQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 A D + + L+ L+ G + Sbjct: 424 -----AIGDAIATRDIFLRMIPMLEARGLT 448 >gi|91788599|ref|YP_549551.1| 3'-5' exonuclease [Polaromonas sp. JS666] gi|91697824|gb|ABE44653.1| 3'-5' exonuclease [Polaromonas sp. JS666] Length = 198 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 57/168 (33%), Gaps = 24/168 (14%) Query: 17 ARYVDAIAVDTETLGLMPR-----RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71 A+ DTE D IVQLS + I ++ + ++ Sbjct: 43 LAGTAALGFDTE--SRPTFAKNEASDGPHIVQLSTLE-KAYIFQL-QDADCRRAVAMLME 98 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-----RTYTNQHGLKDNLKEL 126 K D L FGV + V L + Y G++ + + Sbjct: 99 SPAIIKAGFGLGDDRRRLISKFGVDPQGVLD------LNTVFRKKGYRKDMGVRGAVAVV 152 Query: 127 LGINISKA--QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 K+ +S+W+ LSD Q+ YAA+D ALR+ +L Sbjct: 153 FNKRFIKSRKATTSNWANSKLSDAQIIYAANDAY--AALRVFMALELD 198 >gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] Length = 988 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 18/129 (13%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVDIIRI-----------AAGQKN 62 + +A DTET L PR +V + G+ V I + Sbjct: 384 DPQNPVAWDTETTDLDPRNAN--LVGIGCCWGMGENDVAYIPLGHNITTNLEKNLQLNTV 441 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +L K F +FD + Y +F +AS L + H L D Sbjct: 442 LSTLDKILASRDYPKTFQNAKFDRLIFKYQGVTLDGVIFDPMLASYLLNP-DHTHNLTDL 500 Query: 123 LKELLGINI 131 LG+ + Sbjct: 501 ALRYLGLQL 509 >gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23] Length = 283 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 73/207 (35%), Gaps = 53/207 (25%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP----GDGTVDIIRIAAGQ 60 H D A+ ++VDTET GL P D++ +QLS D VD Sbjct: 2 THSTDQTAKF---PTSYVSVDTETTGLYPMYGDKI--IQLSAIKYIDDKLVDTFDTLINP 56 Query: 61 K------------------NAPNLVGMLVD-----EKREKIFHYGRFDIAVLF-YTFGVR 96 N P ++ D E + H FD + L + Sbjct: 57 DGSNNNAKSVNNISESSLKNQPTFDEVIGDFVNFVEDLPWVGHNLSFDFSFLKSEELKIA 116 Query: 97 V--RPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINIS-KAQQSSDWSADDLSDEQLQY 152 + T +IA + N+ L+ K+ NI K +S L D Q+ Sbjct: 117 SFKKNSVDTLQIARSIYGNKGNK--LQQLAKKF---NIDYKNLHNS------LYDAQI-- 163 Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDL 179 AAS HL ++ T K +++ + D+ Sbjct: 164 AASLYQHLRSVFQ--TNKCKKINKKDI 188 >gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis OB47] Length = 1402 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 51/205 (24%) Query: 22 AIAVDTETLGLMPRRDRLCIV--------QLS-------PGDGTV------------DII 54 + VD ET G +RDR+ + Q++ +G + D++ Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITERFSTFVDPEGKIPVRISELTGIYQDMV 449 Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRLT 110 A +A + H +FDI L + G+ T SR Sbjct: 450 DKAPKLSDAILEFERFASGSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELSRRL 508 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 T + H L + E L + + K +D SD + + E+ Sbjct: 509 LTDLSSHKLNK-VAEFLNVEL-KHHHRAD---------------SDAETTANIFISLVER 551 Query: 171 LQRLGRSDLATSCCNFLMDRAELDL 195 L+ G N + A+ DL Sbjct: 552 LKARG-YKWLK-ELNSIESNAKADL 574 >gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817] Length = 1450 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 36/161 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVDII--------RIAAG 59 P + + I D ET+GL + +++ G+ VD I Sbjct: 414 PKDVPLLEENFIVFDLETMGLNSHEHEI--IEIGAVKLRGNRIVDRFSQLVNPQKPIPKK 471 Query: 60 QKNAPNLVGMLVD--EKREKIF--------------HYGRFDIAVLFYT----FGVRVRP 99 + N+ +VD E++ H FD+ + G P Sbjct: 472 IQELTNITQEMVDNMPTIEEVLPKFMEFVGDATMVAHNAAFDMGFIRRDVKRLLGYDYTP 531 Query: 100 -VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 + T +R +GLK+ ++LG+++ ++ D Sbjct: 532 AIIDTLQMARDLYPDLKGYGLKNL-NKVLGLSLESHHRAVD 571 >gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501] gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501] Length = 970 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 49/141 (34%), Gaps = 29/141 (20%) Query: 22 AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNLVG--------- 68 +A DTET L PR L C G+ DI I K L Sbjct: 381 PVAWDTETTALNPREAELVGIGC----CWGNKPTDIAYIPIAHKQGKQLRKEQVFDRLQS 436 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELL 127 +L K+F +FD + + G+ + V T +AS + H L + ++ L Sbjct: 437 ILESNNYPKVFQNTKFDRLIFKHQ-GINLDGVVLDTMLASYVLHPE-KSHKLSELCEQYL 494 Query: 128 ---------GINISKAQQSSD 139 + I K Q +D Sbjct: 495 EGITSLDYKDLGIGKKQTIAD 515 >gi|254672325|emb|CBA05474.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria meningitidis alpha275] Length = 312 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 9 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 69 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + C L +R L G + Sbjct: 170 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217 >gi|161870321|ref|YP_001599491.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442] gi|161595874|gb|ABX73534.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442] Length = 461 Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 9 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 69 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + C L +R L G + Sbjct: 170 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217 >gi|225450559|ref|XP_002277541.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 208 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 16/161 (9%) Query: 17 ARYVDAIAVDTE-------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 A + +D E ++ +LCI + I+++ + +L G Sbjct: 49 AGKPMVVGLDIEWRPNRIPSMSNKSATLQLCI------NNKCLILQLFYMDEIPQSLKGF 102 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLG 128 L+D + DI L +G+ +I A + + GLKD E++ Sbjct: 103 LLDSNFTFVGVEVGADIDKLKNEYGLECSCSADVRILAMQRWPGRFRRPGLKDLAWEVVN 162 Query: 129 INISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + + K + S+W A L++ Q++YA D + + + Sbjct: 163 LRMKKPKHVCMSNWEARVLNENQVEYACIDAYASYRIGHKL 203 >gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1] gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1] Length = 1022 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 41/152 (26%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------ 64 + AVDTET + R ++ + S + +A N P Sbjct: 402 LQAAPYFAVDTETTSINWREAQIVGLSFSVQAHEAYYLPLAHVDYNEPQKKAKNKKEEAE 461 Query: 65 -------------------------NLVGMLVDEKREKIFHYGRFDIAVLFYT---FGVR 96 L +L + KI + ++D VL + Sbjct: 462 QAKLLANATVDPLIAKQLDRDTVLAKLKPILENPNIGKIGQHLKYDAHVLSKYGIELNMS 521 Query: 97 VRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127 + T +AS + +H + D + L Sbjct: 522 PKNWEMDTMLASYVLNAAATRHSMDDLARHYL 553 >gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271] gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271] Length = 1435 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 49/157 (31%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGT--------------VDII 54 P + D ET GL DR L V++ G+ I Sbjct: 410 PQAIDLDLATYVVFDVETTGLSSVYDRIIELAAVKMRNGEVIDTFEAFINPGYHLSAMIT 469 Query: 55 RIAAGQK----NAPNLVGMLV-----DEKREKIFHYGRFDIAVL---FYTFGVRV--RPV 100 + +AP ++ + + H FD+ L + G+ V +PV Sbjct: 470 ELTGITDAMLADAPPEAEVMARFAEFSKDTILVAHNASFDMGFLNKTYARLGMPVPDQPV 529 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T SRL H L K G+ + + ++ Sbjct: 530 IDTLELSRLVNPDMRSHRLNVLAKHY-GVTLEQHHRA 565 >gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism HF4000_APKG10H12] Length = 891 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 21/173 (12%) Query: 44 LSPGDGTVDIIRIAAGQKNAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 S + + +A + L ML D + KI H + D+ L Sbjct: 338 FSTAARSASYVPLAQDGLDLTGSLDGGTVFGTLGPMLEDPQVRKIGHDLKRDMLWLAAH- 396 Query: 94 GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDL 145 +R+R + T IAS L ++ E G K ++ D+ Sbjct: 397 EIRLRGLELDTMIASYLLDATRTTPTVETVALEHAGYQALTADTVRGKGAKAPDFDRLP- 455 Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 D L YA +L + ++L + A+++ G Sbjct: 456 PDGVLAYACERADLPLQAAEPLRARLDQERLAELYRELEQPLIPVLADIETAG 508 >gi|159469486|ref|XP_001692894.1| predicted protein [Chlamydomonas reinhardtii] gi|158277696|gb|EDP03463.1| predicted protein [Chlamydomonas reinhardtii] Length = 112 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 KE +G +Q D L+ +Q+ YA+ DVVHL+ L + R Sbjct: 42 KEAVGAAFKADEQYRD--RRPLTSDQIDYASGDVVHLYGLYDALHLVSRDTWR 92 >gi|326573170|gb|EGE23139.1| DNA polymerase I [Moraxella catarrhalis CO72] Length = 835 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 57/191 (29%), Gaps = 48/191 (25%) Query: 2 TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 T + +I + A+A D ET GL L + + ++ Sbjct: 159 TALYPTNDEIDDVLIRLKQYPALACDIETTGLE-LGSELYSIAFAWSQHEGCAFKV---- 213 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIA-VLFYTF--------------GVRVRPVFCTKI 105 + L IFH FDI ++++ F R + TKI Sbjct: 214 TDKVQLKRFFESYSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKI 273 Query: 106 ASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL--H 161 + L T N GLK+ E +G YA DV H+ H Sbjct: 274 IAYLATNNTQGNILGLKELSHEFVG----------------------NYAI-DVKHVLNH 310 Query: 162 ALRLQFTEKLQ 172 L L+ Sbjct: 311 PLATVLEYNLK 321 >gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] Length = 929 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 70/207 (33%), Gaps = 25/207 (12%) Query: 6 VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + + + A +++DTET GL +L + S + +A AP Sbjct: 338 LTDAQLDAWLHKLMAAPLVSLDTETTGLDGMTAQLVGISFSIEAHQAAYLPLAHHYPGAP 397 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 + L L +K+ ++D + G+ + T + S + ++ Sbjct: 398 DQLGREHALQKLKHWLESPAHKKLGQNLKYDQHIFANH-GIAFAGIAEDTLLQSYVLESH 456 Query: 114 TNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 H + + LG++ + K + + DL +YAA D L Sbjct: 457 KP-HEMGNLALRHLGLSTVSYADVVGKGAKQIGFDQVDLETA-TRYAAEDADITLQLHQT 514 Query: 167 FTEKLQRLGRSDLATSCCNFLMDRAEL 193 + +LQ GR D L R L Sbjct: 515 LSPQLQ--GRLDAVYRQIE-LPVREVL 538 >gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 928 Score = 45.4 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 30/144 (20%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 + + K+ ++DI VL P+F IA L H L K Sbjct: 405 FKEIFESDTILKVGQNLKYDINVLKKYGIRMNYPIFDILIAHYLINPE-YLHNLDFLAKT 463 Query: 126 LLGINI--------SKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171 L I SK + LS Q+ YA + + L+ F + Sbjct: 464 YLNYRIINTEELIGSKKESQ-------LSVRQVPLSLLADYACENADIVLKLKNIFEPII 516 Query: 172 QRLGRSDLATSCCNFLMDRAELDL 195 ++ + L R EL L Sbjct: 517 RKSN--------FSNLFYRIELPL 532 >gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia] Length = 858 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111 I A DEK KI+H FD + G+ VR F T +RL Sbjct: 118 IDNFAQNSDLIMLFKDYFEDEKILKIWHNYGFDKHIFGNN-GINVRGFFGDTMHMARLLD 176 Query: 112 T--YTNQHGLKDN-LKELLGINISKAQQ 136 ++ L L I + K ++ Sbjct: 177 PSKQPQEYSLAKLSLAYEEEIKLVKTKR 204 >gi|147818277|emb|CAN64722.1| hypothetical protein VITISV_026723 [Vitis vinifera] Length = 219 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 16/161 (9%) Query: 17 ARYVDAIAVDTE-------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69 A + +D E ++ +LCI + I+++ + +L G Sbjct: 60 AGKPMVVGLDIEWRPNRIPSMSNKSATLQLCI------NNKCLILQLFYMDEIPQSLKGF 113 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLG 128 L+D + DI L +G+ +I A + + GLKD E++ Sbjct: 114 LLDSNFTFVGVEVGADIDKLKNEYGLECSCSADVRILAMQRWPGRFRRPGLKDLAWEVVN 173 Query: 129 INISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + + K + S+W A L++ Q+ YA D + + + Sbjct: 174 LRMKKPKHVCMSNWEARVLNENQVDYACIDAYASYRIGHKL 214 >gi|320591752|gb|EFX04191.1| 3 -5 exonuclease helicase [Grosmannia clavigera kw1407] Length = 525 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 38/183 (20%) Query: 21 DAIAVDTETL--GLMPRRDR--LCIVQLSPGD--GTVDI------------IRIAAGQKN 62 + D E + + R +C+VQL+ G + + Sbjct: 120 PLLGFDLEWMMNAMRWHGPRRNVCLVQLASPSRIGLFHLSLYPVRERGGEFLDNDINSLV 179 Query: 63 APNLVGMLVDEKREK----IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-- 116 AP L +L D K K I + D L + R + +L R Sbjct: 180 APTLRRILEDAKTIKTGVCI----KGDATRLRNHLNIDTRGMIELSHLHKLVRYSRTGDV 235 Query: 117 -------HGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L ++E L + + K +S DWS L+ EQ+ Y+ASD + Sbjct: 236 QLVNRRLVPLAVQVQEHLRLPMFKGADVRSGDWSK-PLNTEQIIYSASDAYAAVQIFSVL 294 Query: 168 TEK 170 + Sbjct: 295 ERE 297 >gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus harei ACS-146-V-Sch2b] Length = 1012 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 54/191 (28%) Query: 26 DTETLGLMPRRDRLCIV---------------QLSPGDGTV--DIIRIAAGQ----KNAP 64 D ET GL R D++ + QL + + ++ + +N P Sbjct: 4 DIETTGLSSRNDKITEIGAVKIKNGMIVDRFSQLINPEKEIPQVVVDLTGISNAMVENEP 63 Query: 65 NLVGM---LVD--EKREKIFHYGRFDIAVLFYTFG----VRVRPVFCTKIASRLTRTYTN 115 + + D + + H +FDI+ + + V P+ T + +R T + Sbjct: 64 TIEEVILKFYDFAKDAVLVAHNAKFDISFIRREYANNNLVFNHPILDTLVLARATMSDMK 123 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + L K LG+++ A + A +D + ++ EK++R Sbjct: 124 RFNLGTLCKN-LGVSLVGAHR----------------AVNDAEATAEVFIKLIEKIKRE- 165 Query: 176 RSDLATSCCNF 186 NF Sbjct: 166 ------EEFNF 170 >gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] Length = 903 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 21/138 (15%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111 + + + + D R K+ H + + V G R+ V T +A+ L + Sbjct: 372 LDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTMDTALAAYLVK 430 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLH 161 L E LG ++ A SD QL + A D + Sbjct: 431 PGRRSFALDALAVEYLGRELAPAAA---------SDGQLAFGADDRAEQDALMAQARAVL 481 Query: 162 ALRLQFTEKLQRLGRSDL 179 L FT +L+ +G ++L Sbjct: 482 DLGDAFTTRLKEVGAAEL 499 >gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] Length = 903 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 21/138 (15%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111 + + + + D R K+ H + + V G R+ V T +A+ L + Sbjct: 372 LDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTMDTALAAYLVK 430 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLH 161 L E LG ++ A SD QL + A D + Sbjct: 431 PGRRSFALDALAVEYLGRELAPAAA---------SDGQLAFGADDRAEQDALMAQARAVL 481 Query: 162 ALRLQFTEKLQRLGRSDL 179 L FT +L+ +G ++L Sbjct: 482 DLGDAFTTRLKEVGAAEL 499 >gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] Length = 953 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 15/118 (12%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L + D ++ + H G+FD++ L F T IA+ L + LKD Sbjct: 408 LQPLFSDPQKAVVAHNGKFDMSALSLIGLDVPHLSFDTAIAAALL---GKRQSLKDLAFA 464 Query: 126 LLG------INISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171 L I +++ + ++ +Q+ YA++DV L F +L Sbjct: 465 ELRDADDRPIEMTRIETLIGTGKKQITMDQVAIEQVTPYASADVDMTARLLALFMPQL 522 >gi|242057157|ref|XP_002457724.1| hypothetical protein SORBIDRAFT_03g012385 [Sorghum bicolor] gi|241929699|gb|EES02844.1| hypothetical protein SORBIDRAFT_03g012385 [Sorghum bicolor] Length = 183 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 19/143 (13%) Query: 23 IAVDTETLGLMPRR-----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + +D E P ++ I+QL G ++++ + ++ L D Sbjct: 32 VGLDCE---WKPNYRSWTTSKVAILQLCAG-TRCLVLQLLYVDRVPASVRSFLADPDVLF 87 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN------QHGLKDNLKELLGINI 131 + D+A L +G+ + SR + GLK +E+LG+ + Sbjct: 88 VGIGVGEDVAKLDADYGLTCAAHVD--LESRCNDYLGRYTGVGRRLGLKGYAEEVLGLFM 145 Query: 132 SK--AQQSSDWSADDLSDEQLQY 152 K S+W DL + Q++Y Sbjct: 146 EKPRGVTMSNWEKHDLEEAQIRY 168 >gi|70951584|ref|XP_745021.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56525206|emb|CAH81778.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 260 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 21/44 (47%) Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++K Q +W+ LS + L+YA DV+ L + KL Sbjct: 209 DKEVNKEYQIINWNFRPLSFKSLEYAILDVLILKQFYILIQSKL 252 >gi|189207443|ref|XP_001940055.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187976148|gb|EDU42774.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 216 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 56/208 (26%) Query: 9 GDIPAECAARYVDAI------AVDTETLGLMPRRDRLC----------IVQLSPGDGTVD 52 GD+ E A + I +D E + LC ++ G V Sbjct: 16 GDLVDELVACHAPPIPFSPTMYIDLEGVN-------LCREGSVLIFTLLIDTVMPPGRVY 68 Query: 53 IIRIAAGQKNAPN--------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104 +I + A N L+ +L DEK K+F R D LF F V ++ V + Sbjct: 69 LIDVHTLGAQAFNTAGAKQKTLIDILQDEKIPKVFFDVRNDSDALFAHFDVALQGVGDVQ 128 Query: 105 IAS----RLTRTYTNQHGLKDNLKELLGINI------------SKAQQ--------SSD- 139 + + T + GL ++ I+ K ++ S D Sbjct: 129 LMESATWKTTVSLKFLSGLAKCVETYQPISYGSGGLANWKRAKEKGERLFKAGHGGSYDV 188 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQF 167 ++ + ++ + Y DV +L L +F Sbjct: 189 FNQRQIPEDIISYCVGDVQYLPELLNRF 216 >gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens] Length = 808 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 4/77 (5%) Query: 47 GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105 G + + + G D +K++H FD +L G+ + + T Sbjct: 78 GKNRLWVDVLDGGDDVLRVFKRYFEDPSIQKVWHNYSFDKHILSRH-GIHPQGFYADTMH 136 Query: 106 ASRL--TRTYTNQHGLK 120 +RL + ++ G Sbjct: 137 LARLNDSARRGSKGGYA 153 >gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM 7454] gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM 7454] Length = 681 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRVR-PVFCTKIASRLTRTY 113 QK N DE K+ FDI VLF G+ + P T + L Sbjct: 352 PDQKFVENFKKYFEDENINKV----SFDIKEDIVLFNKLGIEINFPYDDTMLMHYLIDPS 407 Query: 114 TNQHGLKDNLKELLGINI-----------SKAQQSSDWSADDLSDEQL-QY------AAS 155 + + LK + L + +K S DLS+++L +Y A Sbjct: 408 RSSYDLKTFSQAFLKYEVLNEEDLLGKGRNKK------SYKDLSEKELGKYLSSIINAIE 461 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATSC-CNFLMDRAELDLLGW 198 D + T+KL+ L +L C AE+++ G+ Sbjct: 462 DSL------DILTDKLKELSMYELYKDCEIKLSKVLAEMEITGF 499 >gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom phytoplasma] Length = 1492 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 65/219 (29%), Gaps = 58/219 (26%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA--PNLVG 68 + + + + +D ET G RDR+ V++ G + K+ NL+ Sbjct: 397 DFGLKNHNYVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEYFDELINPGKDIKISNLIQ 456 Query: 69 MLVD--------------------------EKREKIFHYGRFDIAVLFYTFG-----VRV 97 L + + H FDI L TF + Sbjct: 457 RLTNISDEILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPL 516 Query: 98 RPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 PV T +A + L+ +K I + S+ Q A D Sbjct: 517 LPVIDTLTLAQKYFNKILKYFSLEKIVKSF-KIKLD-------------SEGQYHNALFD 562 Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 + L+ E+L+ A NF + LD+ Sbjct: 563 ARATALIFLEMLEQLE-------AQKIFNFYDLQGSLDI 594 >gi|254670274|emb|CBA05558.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria meningitidis alpha153] Length = 461 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 9 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 69 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + C L +R L G + Sbjct: 170 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217 >gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole] Length = 609 Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 13/140 (9%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58 + HE D+ + + +DTET L + + ++Q ++ + Sbjct: 16 NVVEHEDDLDGFESFIRSNLRILGLDTETTDLGIYKPDFGIRLIQFGNP-WESWVLPVER 74 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112 G V L +R + H FD+ V+ T GV + ++ TKI S L R Sbjct: 75 GGVFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133 Query: 113 YTNQHGLKDNLKELLGINIS 132 Y G L+EL I Sbjct: 134 YKEG-GTGHKLEELTKFYID 152 >gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM 6725] gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM 6725] Length = 1402 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 64/205 (31%), Gaps = 51/205 (24%) Query: 22 AIAVDTETLGLMPRRDRLCIV--------QLS-------PGDGTV------------DII 54 + VD ET G +RDR+ + Q++ +G + D++ Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITERFSTFVDPEGKIPVRISELTGIYQDMV 449 Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRLT 110 A +A + H +FDI L + G+ T SR Sbjct: 450 DKAPKLSDAILEFEKFASGSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELSRRL 508 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 T + H L + E L I + K +D SD + + E+ Sbjct: 509 LTDLSSHKLNK-VAEFLNIEL-KHHHRAD---------------SDAETTAGIFISLVER 551 Query: 171 LQRLGRSDLATSCCNFLMDRAELDL 195 L+ G N + A+ DL Sbjct: 552 LKARG-YKWLK-ELNSIESNAKADL 574 >gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 871 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 21/140 (15%) Query: 47 GDGTVDIIRIAAG-----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100 +G +I +K L + DE +K+ H + + + + ++ Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKN-LITFLNKYDIDIQGFD 404 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 F T IA+ L + + + D + L +I SD S++ +S +L Sbjct: 405 FDTAIAAYLIDSSKANYEVFDLINRFLEKDI-----KSD------SNDLKAICSS---YL 450 Query: 161 HALRLQFTEKLQRLGRSDLA 180 L + E L + +L Sbjct: 451 KKLYEKLKEMLHKEDMDELY 470 >gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917] gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917] Length = 996 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 31/190 (16%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG--------------- 59 +A+DTET L P + +L V + G D+ I G Sbjct: 383 LCRDPAQPVALDTETSDLNPFKAQLVGVGVCWGPELDDLAYIPVGHRPSAEPSLEDSSAI 442 Query: 60 -----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 L L + K ++D +L V T +A R Sbjct: 443 QQLPLDTVLAQLAPWLASAEHPKALQNAKYDRLILLRHGLPLGGVVMDTLLA-DYLRDAA 501 Query: 115 NQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 +HGL + GI +K ++S ++ +++ L Y DV L L Sbjct: 502 AKHGLDAMAERDYGIQPTLFSDLVGKAKDGKASCFAEVEINQAAL-YCGMDVHLTRRLAL 560 Query: 166 QFTEKLQRLG 175 ++L +G Sbjct: 561 DLRQQLAAMG 570 >gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] Length = 871 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 21/140 (15%) Query: 47 GDGTVDIIRIAAG-----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100 +G +I +K L + DE +K+ H + + + + ++ Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKN-LITFLNKYDIDIQGFD 404 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 F T IA+ L + + + D + L +I SD S++ +S +L Sbjct: 405 FDTAIAAYLIDSSKANYEVFDLINRFLEKDI-----KSD------SNDLKAICSS---YL 450 Query: 161 HALRLQFTEKLQRLGRSDLA 180 L + E L + +L Sbjct: 451 KKLYEKLKEMLHKEDMDELY 470 >gi|115304357|ref|YP_762649.1| DNA polymerase [Cyanophage Pf-WMP4] gi|110559071|gb|ABG75891.1| DNA polymerase [Phormidium phage P4] gi|113201851|gb|ABI33163.1| PfWMP4_19 [Phormidium phage Pf-WMP4] Length = 630 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 53/179 (29%), Gaps = 35/179 (19%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAA---------GQKNAPNLVGMLV 71 IA+D ET Q++ G + + +A+ G A L +L Sbjct: 4 YIALDLETE------------QVARMPHGKIHALFLASNNGAEFYPWGLAAAAVLEKLLT 51 Query: 72 DEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D + +D+ VL + + T + + + L+ + + Sbjct: 52 DPDVIFVIQNAAYDVWVLRHHGVDIPPGRYVDTMVLAHCVNPQQGDYSLESYGRSVDDEK 111 Query: 131 IS---KAQQSSDW--SAD-------DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + + ++ W + + +Y DV + L+R R Sbjct: 112 VDYRTEMVRAGLWEGGKEDPSVYDVPFNPIMERYGLQDVRLTLKWWGELLPHLERDARL 170 >gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246] Length = 824 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 40/124 (32%), Gaps = 12/124 (9%) Query: 17 ARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRI--------AAGQKNAPNLV 67 A D ET GL P + S GT + + L Sbjct: 399 LAQQPAFVFDLETAGLDPVHDPIVG-YSFSWQKGTAYYLPVRAPAGEPVLNPDTVLAALK 457 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKEL 126 + + EK H +FD+ VL + GV + V + +A L HGL D + Sbjct: 458 PVFENPAIEKRNHNIKFDLIVLAAS-GVELAGVAGDSMVAHYLLDPGARAHGLDDLTLDE 516 Query: 127 LGIN 130 L Sbjct: 517 LRHT 520 >gi|297823019|ref|XP_002879392.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325231|gb|EFH55651.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 133 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 26/124 (20%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKI--------FHYGRFDIAVLFYTFGVRVRPVFC 102 II+++ L L D + FH + + + +R Sbjct: 14 CLIIQLSHCNYIPDILRSFLEDRTITVVGVWNNQERFH---QRLEI-WRLVDIR------ 63 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAASDVVH 159 T+ + + ++E LG + K S+W A +LSD+Q+ A+ DV Sbjct: 64 -----DYLPTWLWKCSFEMIVEECLGYQGVRKDKEICRSNWGARNLSDDQIVQASHDVYV 118 Query: 160 LHAL 163 L Sbjct: 119 CCKL 122 >gi|262375191|ref|ZP_06068425.1| 3'-5' exonuclease [Acinetobacter lwoffii SH145] gi|262310204|gb|EEY91333.1| 3'-5' exonuclease [Acinetobacter lwoffii SH145] Length = 219 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 11/115 (9%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ D L + V+ + K+ + D A LF G+ + V Sbjct: 71 LIQLATLDKAYL---FQMNDSIWDFLKPIFVNRDQIKVGFGLKND-AHLFRKKGIELNSV 126 Query: 101 FCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQ 151 S+ + + N GLK+ + L +N K+++ +S+W++ LS Q+ Sbjct: 127 IE---LSKCFKAFGLNNPVGLKNAMALLFQVNFPKSKRISTSNWASKKLSPAQID 178 >gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1] gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1] Length = 608 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 13/140 (9%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58 + HE D+ + + +DTET L + + ++Q ++ + Sbjct: 16 NVVEHEDDLDGFESFIRSNLRILGLDTETTDLGIYKPDFGIRLIQFGNP-WESWVLPVER 74 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112 G V L +R + H FD+ V+ T GV + ++ TKI S L R Sbjct: 75 GGVFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133 Query: 113 YTNQHGLKDNLKELLGINIS 132 Y G L+EL I Sbjct: 134 YKEG-GTGHKLEELTKFYID 152 >gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054] Length = 895 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 28/90 (31%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 + L+ G A + + L D KR K H + + Sbjct: 348 IALATGTAAAWFDPAALAEADDRAFTAWLADPKRPKALHIAKQVMRAFAERGWSFAGVTA 407 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +A+ L + L +E LG ++ Sbjct: 408 DTALAAYLEKPGRRAFTLDVLAEEYLGRSL 437 >gi|167465490|ref|ZP_02330579.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae subsp. larvae BRL-230010] Length = 190 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 ++ A L+ + + H+ FD++ L V CT++ S+L Sbjct: 56 IPEELAIPLLACFMSGSIV-VAHHAPFDLSFLARYL-VEPSSFVCTRVLSKLVEP-GESA 112 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L + E GI ++ + A +DV + Q + LG Sbjct: 113 SLAA-VAERRGIELTGHHR----------------AMADVEATVKIFQQLKAEADALG 153 >gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] Length = 914 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 14/135 (10%) Query: 6 VHEGDIPAECAARYVDAIA-VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E D+ A A+ +DTET L+P + +L + L G I +A +AP Sbjct: 321 LTEADLDRWLAIIDAAALTSIDTETTSLVPLQAQLVGISLCCEPGVAAYIPVAHRYADAP 380 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 + L D + K+ ++D + G+ +R + T + S + ++ Sbjct: 381 VQLSRELVLGKMQAWLEDPAKAKVGQNLKYDSHIFANH-GITLRGIAHDTMLESYVFESH 439 Query: 114 TNQHGLKDNLKELLG 128 H + LG Sbjct: 440 -RSHDMDSLALRHLG 453 >gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 204 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 20/118 (16%) Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 ++ A L+ + + H+ FD++ L V CT++ S+L Sbjct: 70 IPEELAIPLLACFMSGSIV-VAHHAPFDLSFLARYL-VEPSSFVCTRVLSKLVEP-GESA 126 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L + E GI ++ + A +DV + Q + LG Sbjct: 127 SLAA-VAERRGIELTGHHR----------------AMADVEATVKIFQQLKAEADALG 167 >gi|24663607|ref|NP_648618.1| CG11263, isoform A [Drosophila melanogaster] gi|281366175|ref|NP_001163435.1| CG11263, isoform B [Drosophila melanogaster] gi|7294518|gb|AAF49860.1| CG11263, isoform A [Drosophila melanogaster] gi|21430260|gb|AAM50808.1| LD32220p [Drosophila melanogaster] gi|220950120|gb|ACL87603.1| CG11263-PA [synthetic construct] gi|220959182|gb|ACL92134.1| CG11263-PA [synthetic construct] gi|272455186|gb|ACZ94706.1| CG11263, isoform B [Drosophila melanogaster] Length = 265 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 4/120 (3%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 I I A L +L ++ K+ HY L + + + +F T +A L+ Sbjct: 89 IFDIKALGLIFLELAKILEADQPRKVIHYSHRIADHLLHRQRISLGGIFDTFVAVCLSSN 148 Query: 113 YTNQHGLKDNLKELLGINISKA----QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + L + + + G+ + K + +++A L+ Q++Y A V H + Sbjct: 149 TRIPYTLPEAISLVFGLPMEKVTGGCESQRNFTARPLTHSQMRYLAKLVQLQHIMHDHLN 208 >gi|326567456|gb|EGE17571.1| DNA polymerase I [Moraxella catarrhalis BC1] Length = 835 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 57/191 (29%), Gaps = 48/191 (25%) Query: 2 TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 T + +I + A+A D ET GL L + + ++ Sbjct: 159 TALYPTNDEIDDVLIRLKQYPALACDIETTGLE-LGSELYSIAFAWSQHKGCAFKV---- 213 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIA-VLFYTF--------------GVRVRPVFCTKI 105 + L IFH FDI ++++ F R + TKI Sbjct: 214 TDKVQLKRFFESYSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKI 273 Query: 106 ASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL--H 161 + L T N GLK+ E +G YA DV H+ H Sbjct: 274 IAYLATNNTQGNILGLKELSHEFVG----------------------NYAI-DVKHVLNH 310 Query: 162 ALRLQFTEKLQ 172 L L+ Sbjct: 311 PLATVLEYNLK 321 >gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J] gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J] gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] Length = 937 Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 26/189 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-------- 68 VD + +DTET + P +L + LS G I +A + Sbjct: 351 LDEVDLVCIDTETTSIDPMLAQLVGISLSVKPGEACYIPVAHRGPDVAGFDAAAQLSRDT 410 Query: 69 -------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120 L DE R+K+ + ++D V + +R + T + S + ++ N HG+ Sbjct: 411 VLARMKLWLEDESRKKVGQHLKYDAHVFANH-DIALRGIEHDTMLESYVLESHRN-HGMD 468 Query: 121 DNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + +L + K + L +YAA D L K+ Sbjct: 469 ALAERVLHLKTITYEAVCGKGASQIGFDEVPLDRA-TEYAAEDADVTLRLHRTLFPKVAE 527 Query: 174 LGRSDLATS 182 + Sbjct: 528 DDKLRYVYE 536 >gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] Length = 888 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 19/139 (13%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 + + L L D +R K+FH + + V T +A+ L + Sbjct: 358 DPSELDEADERALTAWLADPERPKVFHNAKGAMRVFAEHGWTIEGVTMDTALAAYLVKPG 417 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLHAL 163 L E L ++ A D QL + A D + L Sbjct: 418 RRSFDLDALSLEYLHRELAPAAA---------PDGQLAFGADDGAEAEALMVQARAILDL 468 Query: 164 RLQFTEKLQRLGRSDLATS 182 F +L +G +DL Sbjct: 469 GEAFEGRLAEVGAADLLRD 487 >gi|86608996|ref|YP_477758.1| exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557538|gb|ABD02495.1| exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 783 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 21/122 (17%) Query: 65 NLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYT 114 L ++ D + + +FH+ D+ +L F P+FCT A++ Sbjct: 44 PLAQIVADLRRLAQGKTLVFHHADHDLKILKQAFDQVNQDWLPNPIFCTWSAAKQCFPNL 103 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT-EKLQR 173 + L+ + LGI + +S L+ + A+ D + + L T +L+ Sbjct: 104 AGYSLEYL-SKHLGIQLESGYFNS-----KLAHD----ASYDALFTYHLYRHLTHAQLKA 153 Query: 174 LG 175 Sbjct: 154 QN 155 >gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 892 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 8/90 (8%) Query: 46 PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY----TFGVRVRPVF 101 D + + L L D + K H + + L+ G+ Sbjct: 352 TSDDAACVDVPELTPDDEKALAAWLTDPQATKAMHGAKGPLLALWARQLDLAGLDS---- 407 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T++A+ L R + L D LG + Sbjct: 408 DTQLAAYLLRPDQRSYDLDDLALRHLGREL 437 >gi|325204438|gb|ADY99891.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240355] Length = 470 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 18 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 78 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + C L +R L G + Sbjct: 179 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|325134568|gb|EGC57212.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399] gi|325144729|gb|EGC67024.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240013] gi|325205795|gb|ADZ01248.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M04-240196] Length = 470 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 18 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 78 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + C L +R L G + Sbjct: 179 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW] gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW] Length = 699 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 37/117 (31%), Gaps = 23/117 (19%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRLTRTYTNQHG 118 P + D + H FD+ L GVR PV T I SR + +H Sbjct: 578 LPPFRAFVGDA--VLVAHNAAFDLKFLRLKQRAAGVRFDGPVLDTMILSRQIQGDHGEHS 635 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L LGI + A D + A+ L+ + L+ G Sbjct: 636 LDGLAAR-LGIGLVDRHS----------------AMGDSLMTAAIFLRLMDMLETQG 675 >gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] Length = 879 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 31/164 (18%) Query: 20 VDAIAVDT--ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 +A+AVD ETLGL LS + + + A K+ L L D K Sbjct: 340 AEALAVDIDGETLGL-----------LSAENKGLKLDLAALDAKDEQVLRTWLADRGAPK 388 Query: 78 IFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 FH + L G + V T +A+ L R L D L+ G ++ + Sbjct: 389 WFHDSKQSFHALRQQ-GFALDGVEHDTSVAAYLVRPDLRSWSLGDVLQRHAGRDLPENSG 447 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 S L Q A L ++L G+++L Sbjct: 448 S-------LERAQ---AV------RELVGIMNQELTDAGQAELY 475 >gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 362 Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101 + GD V + + AG+ L + D FH FD VL + PV Sbjct: 37 AIGDEPVSVWDLTAGEPIPSRLRKAIADPDTLLYFHNSHFDRTVLRHAMPELAPPVERWR 96 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 T + + ++ L E+LG+ K Sbjct: 97 DTMVQA---LAHSLPGALAALC-EVLGVPQDK 124 >gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11] gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11] Length = 471 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 47/149 (31%), Gaps = 36/149 (24%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVD-------IIRI 56 C+ + DTET GLMP +D + VQ+ +D I Sbjct: 270 ENCSLSELSFTVFDTETTGLMPNKDDI--VQIGAVRVVNGRMVPGERIDQLVNPGRPIPP 327 Query: 57 AAG---------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGV----RVR 98 A+ +AP + + D + + H FD+A L V Sbjct: 328 ASSKVHGISDTMVADAPQPLEAVADFHEFARESVIVAHNAPFDLAFLQKYGKVAGLEWPH 387 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELL 127 P+ T + S + H L + L Sbjct: 388 PILDTVLLSAVVFGSNEVHTLDALCERLC 416 >gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] Length = 986 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 46/138 (33%), Gaps = 23/138 (16%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------------- 65 IA+DTET L P + L + G+ DI+ I G KN + Sbjct: 385 KPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHKNKEDDLIEINQINQLKIEE 444 Query: 66 ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121 L + K ++D +L + V T +A + T +H L + Sbjct: 445 VIFALQDWFSSNENPKTLQNAKYDRLILLRHGIILNGVVMDTLLADYICDA-TLKHSLDE 503 Query: 122 NLKELLGINISKAQQSSD 139 G K + SD Sbjct: 504 IAYREFGF---KPKSFSD 518 >gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9] gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9] Length = 988 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 18/126 (14%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRI-----------AAGQKNAPN 65 + +A DTET L PR +V + G+ V I + Sbjct: 387 NPVAWDTETTDLDPRNAN--LVGIGCCWGTGENDVAYIPLGHNITSNLEKNLPLNTVLST 444 Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +LV K F +FD + Y VF +AS + H L D Sbjct: 445 LEKILVSGDYPKTFQNAKFDRLIFKYQGITLDGVVFDPMLASYVLNP-DRTHNLTDLALR 503 Query: 126 LLGINI 131 LG+ + Sbjct: 504 YLGLQL 509 >gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277] gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277] Length = 863 Score = 44.6 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 22/191 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP-----NLVGMLVDEKREK 77 +A DTET + + RL D + ++ AP + + K Sbjct: 303 VAFDTETTDVDTQNARLVGFSFCFNDEEAYYVPVSHEYLGAPKQASEKFAAWAIS-QIYK 361 Query: 78 ---IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 I ++D V+ G+ T I + L + G+ K L + K Sbjct: 362 GCVIGQNLKYDFKVVKRNLGLEPPVNFKDTMILAWLMDP-GSSVGMDALAKRLYDYDTIK 420 Query: 134 AQQSSDWSAD-------DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 D L + +YAA D F L + T F Sbjct: 421 ---FEDVVKRGETFASVALENA-AKYAAEDAWITLKFYKSFLNLLDPELLALADTHEFAF 476 Query: 187 LMDRAELDLLG 197 ++ +++ G Sbjct: 477 ILTLFDMEREG 487 >gi|332642872|gb|AEE76393.1| polymerase gamma 1 [Arabidopsis thaliana] Length = 1049 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 50/176 (28%) Query: 44 LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 G + + + G+ D +K++H FD ++ G+++ Sbjct: 319 FGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNY-GIKLSGFHG 377 Query: 102 CTKIASRL---TRTYTNQHGLKDNL--------------KELLG---------------- 128 T +RL +R + + L+ EL G Sbjct: 378 DTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKD 437 Query: 129 --------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 I K Q D + + Y+A D + L ++LQ Sbjct: 438 GSEGKLVIIPPVKELQMED------REAWISYSALDSISTLKLYESMKKQLQAKKW 487 >gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata] gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata] Length = 1044 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 50/176 (28%) Query: 44 LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 G + + + G+ D +K++H FD ++ G+++ Sbjct: 314 FGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNY-GIKLSGFHG 372 Query: 102 CTKIASRL---TRTYTNQHGLKDNL--------------KELLG---------------- 128 T +RL +R + + L+ EL G Sbjct: 373 DTMHMARLWDSSRRISGGYSLEALTSDPRVLGGTETKEEAELFGKISMKKIFGKGKLKKD 432 Query: 129 --------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 I K Q D + + Y+A D + L ++LQ Sbjct: 433 GSEGKLVIIPPVKELQMED------REAWISYSALDSISTLKLYESMKKQLQAKKW 482 >gi|147777289|emb|CAN60287.1| hypothetical protein VITISV_011782 [Vitis vinifera] Length = 208 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 21/157 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 ARY + +A+ +QL G I ++ + +L+ L D Sbjct: 66 ARYTNPVAI----------------LQLCVG-RRCLIFQLLYAPEIPTSLIDFLGDTDYT 108 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTY-TNQHGLKDNLKELLGINISK- 133 + + D L +RV V + A+R+ T G+K +E+LG + K Sbjct: 109 FVGVGIQADSQKLLNDHNLRVGNVVDLAVLAARVLNTRELRNAGIKRLAREVLGREVEKP 168 Query: 134 -AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 S W D LSD Q+ YA D + Sbjct: 169 KHVARSRWDTDWLSDAQVHYACVDAFVSFEVGRSLNA 205 >gi|42565057|ref|NP_188690.3| POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding / DNA-directed DNA polymerase/ nucleic acid binding [Arabidopsis thaliana] gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana] gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana] gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana] gi|332642871|gb|AEE76392.1| polymerase gamma 1 [Arabidopsis thaliana] Length = 1034 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 50/176 (28%) Query: 44 LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 G + + + G+ D +K++H FD ++ G+++ Sbjct: 304 FGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNY-GIKLSGFHG 362 Query: 102 CTKIASRL---TRTYTNQHGLKDNL--------------KELLG---------------- 128 T +RL +R + + L+ EL G Sbjct: 363 DTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKD 422 Query: 129 --------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 I K Q D + + Y+A D + L ++LQ Sbjct: 423 GSEGKLVIIPPVKELQMED------REAWISYSALDSISTLKLYESMKKQLQAKKW 472 >gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana] Length = 1088 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 50/176 (28%) Query: 44 LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 G + + + G+ D +K++H FD ++ G+++ Sbjct: 269 FGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNY-GIKLSGFHG 327 Query: 102 CTKIASRL---TRTYTNQHGLKDNL--------------KELLG---------------- 128 T +RL +R + + L+ EL G Sbjct: 328 DTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKD 387 Query: 129 --------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 I K Q D + + Y+A D + L ++LQ Sbjct: 388 GSEGKLVIIPPVKELQMED------REAWISYSALDSISTLKLYESMKKQLQAKKW 437 >gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem] gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem] Length = 608 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 13/140 (9%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58 + HE D+ + + +DTET L + + ++Q ++ + Sbjct: 16 NVVEHEDDLDGFESFIRSNLRILGLDTETTDLGIYKPDFGIRLIQFGNP-WESWVLPVER 74 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112 G V L +R + H FD+ V+ T GV + ++ TKI S L R Sbjct: 75 GGAFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133 Query: 113 YTNQHGLKDNLKELLGINIS 132 Y G L+EL I Sbjct: 134 YKEG-GTGHKLEELTKFYID 152 >gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c] gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c] Length = 923 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 59/193 (30%), Gaps = 26/193 (13%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI E R A+DTET L P + L + + G + Sbjct: 325 TIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFAAEVGCAAYLPFGHDYPG 384 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 AP L +L D K+ +G++D+ VL V T + S + + Sbjct: 385 APVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTS 444 Query: 113 YTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS----DEQLQYAASDVVHLH 161 +H + + LG + K + S E +YAA D Sbjct: 445 GHARHDMDTLARRHLGYETMKYVDLVGKGAKQI-----PFSHVGVQEATRYAAEDADITL 499 Query: 162 ALRLQFTEKLQRL 174 L KL Sbjct: 500 RLHCVLAPKLLAE 512 >gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR] gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR] Length = 886 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 24/127 (18%) Query: 79 FHYG-RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 FH R DI +L VR F T +A+ L + L + LG +S + Sbjct: 392 FHDAKRTDI-LLRRLGNKPVRAGFDTMLAAYLLDPSVSNLDLAALSIKYLGQELSPGE-- 448 Query: 138 SDWSADDLSDEQLQY----AASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAE 192 Y A +D++ L EKL L DL L A+ Sbjct: 449 -------------DYRSFCAQADII--LRLVPVLHEKLAELNMLDLYFDVEMPLLHILAD 493 Query: 193 LDLLGWE 199 ++ G + Sbjct: 494 MEFSGVK 500 >gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39] Length = 959 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 64/182 (35%), Gaps = 34/182 (18%) Query: 21 DAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLV 67 +A DTET L PR L C G D+ I L Sbjct: 382 KPVAWDTETTSLEPRDANLVGIGC----CWGSELSDLAYIPLNHTQGEMLNIEQVLEALR 437 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L E+ K +FD ++ + G+ ++ VF T +AS + + H L D Sbjct: 438 PILESEEYPKTLQNAKFD-RLILRSQGITLKGVVFDTMLASYIINPES-SHNLTDLSLRY 495 Query: 127 ---LGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 LGI + K + +D + ++ Y DV + + + L+ L R Sbjct: 496 LPDLGIVAQSYSQLVPKGKTIADLDINTVA----NYCGLDVFTTFQITQKMQDILKDLPR 551 Query: 177 SD 178 + Sbjct: 552 LN 553 >gi|68058814|ref|XP_671377.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56487494|emb|CAH93756.1| hypothetical protein PB000180.00.0 [Plasmodium berghei] Length = 127 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 20/44 (45%) Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++K Q +W+ LS + L+YA DV+ L KL Sbjct: 76 DKEVNKEYQIINWNFRPLSFKSLEYAILDVLILKNFYNLIQSKL 119 >gi|212545983|ref|XP_002153145.1| hypothetical protein PMAA_010410 [Penicillium marneffei ATCC 18224] gi|210064665|gb|EEA18760.1| hypothetical protein PMAA_010410 [Penicillium marneffei ATCC 18224] Length = 285 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 46/215 (21%) Query: 1 MTTIRVHEGDIP--------AECAARYVDA-IAVDTETLGLMPR----------RD--RL 39 M +I V + D C + V + D E + L + ++ Sbjct: 1 MASITVVDTDSALQEFLTGIENCKVKDVPPSLYFDLEGVRLGRNGTISIISVFIQPLNQV 60 Query: 40 CIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++ + +I +L +L K+F R D + G+R++ Sbjct: 61 YLIDVFTLSEKAFLI----TNDKQTSLKTILEAPSIPKVFFDVRNDSDAMCSHHGIRLQC 116 Query: 100 VFCTKIASRLTRTYTNQH--GLKDNLKELLG---INISKAQQ--SSD---W--------- 140 V ++ R + ++ GL ++ I + K +Q +S W Sbjct: 117 VKDLQVMELAVRFGSQKYVAGLAKCIENHANLPPIELQKWKQIKASVGQLWDPRRGGSYQ 176 Query: 141 --SADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + + + +QY A DV L +L + +KL++ Sbjct: 177 VFNQRPIRTDIIQYCAQDVTILPSLWNVYHQKLRQ 211 >gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group] gi|113623082|dbj|BAF23027.1| Os08g0175600 [Oryza sativa Japonica Group] Length = 570 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 48/173 (27%), Gaps = 47/173 (27%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G+ D +K++H FD V+ G++V Sbjct: 317 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDSHVIEN-CGIKVAGFHAD 375 Query: 103 TKIASRL---TRTYTNQHGLKDNL---------------------KELLG---------- 128 T +RL +R + L+ K + G Sbjct: 376 TMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSE 435 Query: 129 -----INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 I K Q D +L + Y++ D + L KL+ Sbjct: 436 GKTISIEPVKKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAKEW 482 >gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] Length = 1035 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 48/173 (27%), Gaps = 47/173 (27%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G+ D +K++H FD V+ G++V Sbjct: 317 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDSHVIEN-CGIKVAGFHAD 375 Query: 103 TKIASRL---TRTYTNQHGLKDNL---------------------KELLG---------- 128 T +RL +R + L+ K + G Sbjct: 376 TMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSE 435 Query: 129 -----INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 I K Q D +L + Y++ D + L KL+ Sbjct: 436 GKTISIEPVKKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAKEW 482 >gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] Length = 897 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 +D+ + + + +L DE+ KI H + +I + + ++ V F T I L Sbjct: 361 IDVRDFSDKEALLIQIKEVLEDEEIHKIGHDIKHEIRHFYVH-DIEMKNVTFDTMIGEYL 419 Query: 110 TRTYTNQHGLKDNLKELLGINI 131 + + LKD + +G + Sbjct: 420 IDPAKSSYALKDLAAQYIGQEV 441 >gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group] Length = 982 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 48/173 (27%), Gaps = 47/173 (27%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G+ D +K++H FD V+ G++V Sbjct: 264 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDSHVIEN-CGIKVAGFHAD 322 Query: 103 TKIASRL---TRTYTNQHGLKDNL---------------------KELLG---------- 128 T +RL +R + L+ K + G Sbjct: 323 TMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSE 382 Query: 129 -----INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 I K Q D +L + Y++ D + L KL+ Sbjct: 383 GKTISIEPVKKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAKEW 429 >gi|212539151|ref|XP_002149731.1| exonuclease, putative [Penicillium marneffei ATCC 18224] gi|210069473|gb|EEA23564.1| exonuclease, putative [Penicillium marneffei ATCC 18224] Length = 721 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 39/149 (26%) Query: 21 DAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ----------------- 60 + +A+D E T G R+ +V DG V + ++ Sbjct: 337 EVLALDCEMCITEGGKSELTRISLV---NWDGEVVLDKLVKPDLPIINYLTQFSGITKEM 393 Query: 61 ---------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110 L+ +L + + H D+A L P + T I Sbjct: 394 LDPVTTTLADIQRELLELLT-PRTVLVGHSLNSDLAALK-----LTHPFIIDTAIIYPHP 447 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 R + LK ++ LG I K Q D Sbjct: 448 RGPPLKSSLKWLCQKYLGKEIQKGQTGHD 476 >gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] Length = 928 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 14/137 (10%) Query: 6 VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64 + E + A A ++ DTET L P + R+ V S G + + AP Sbjct: 335 LTEAQLDAWLARLMAAKVVSFDTETTSLDPMQARIVGVSFSVEAGHAAYLPLEHHYAGAP 394 Query: 65 ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113 L L D ++K ++D VL G+ + + + +AS + ++ Sbjct: 395 QQLPLEAALAKLKPWLEDASKKKCGQNLKYDCHVLANH-GIALAGIADDSMLASYVLESH 453 Query: 114 TNQHGLKDNLKELLGIN 130 +H + D + LG N Sbjct: 454 -QRHNMDDLARRHLGEN 469 >gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] Length = 879 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 22/198 (11%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK- 74 + IA DTET + + ++ + + + V + +K Sbjct: 312 SLEQESIIAFDTETTSIDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQSAKKA 371 Query: 75 REKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E IF H ++D ++ F + + T I + L + + + + D L Sbjct: 372 IELIFKHFIIGHNLKYDFKIIENNFKLSLPQKYADTMILAWL-KNPSLRVNMDDLALRLF 430 Query: 128 GIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + K + ++++ +L +YAA D L F + L+ DLA Sbjct: 431 NYETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLEPH-LLDLA 485 Query: 181 TS-CCNFLMDRAELDLLG 197 + +F+ ++ G Sbjct: 486 KNYEFDFIKIIMMMEENG 503 >gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] Length = 912 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 12/138 (8%) Query: 4 IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + + + A + +++DTET L P +L + G I +A Sbjct: 317 IILTDAQLGDWLAQCESAELVSIDTETTSLNPMEAKLVGLSFCMELGQAAYIPLAHHYPG 376 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 P+ L L +++ KI ++D V + V T + S + + Sbjct: 377 VPSQLNREQVLQRLKPWLESDEKLKIGQNLKYDRHVFANHGVMLNGIVHDTLLQSYVLES 436 Query: 113 YTNQHGLKDNLKELLGIN 130 + H L LGI Sbjct: 437 HL-SHDLDSLASRHLGIQ 453 >gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12] gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 923 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 59/193 (30%), Gaps = 26/193 (13%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI E R A+DTET L P + L + + G + Sbjct: 325 TIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPG 384 Query: 63 AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 AP L +L D K+ +G++D+ VL V T + S + + Sbjct: 385 APVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTS 444 Query: 113 YTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS----DEQLQYAASDVVHLH 161 +H + + LG + K + S E QYAA D Sbjct: 445 GHARHDMDTLARRHLGYETMKYVDLVGKGAKQI-----PFSHVGVQEATQYAAEDADITL 499 Query: 162 ALRLQFTEKLQRL 174 L KL Sbjct: 500 RLHCVLAPKLLAE 512 >gi|9964623|ref|NP_064753.1| RP DNA pol [Roseobacter phage SIO1] gi|9944314|gb|AAG02598.1|AF189021_17 RP DNA pol [Roseobacter phage SIO1] Length = 580 Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 14/125 (11%) Query: 62 NAPNLVGMLVDEKREKIFHYG-RFDIAVLFYTFG--VRVRPVFCTKIASRLT-RTYTNQH 117 +A L + I H FDI + +G + ++ V T + SRL T H Sbjct: 35 DAETFKR-LAKQVTLWIGHNVIGFDIPQIKKLWGYGIPLKDVADTLVMSRLLDPTRKGGH 93 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L I D+S + E L Y DV + LQ E+L G++ Sbjct: 94 SLDALSG---NEKID----FHDFST--YTPEMLAYCKQDVAINEKVYLQLKEELSNFGKA 144 Query: 178 DLATS 182 + Sbjct: 145 SIQLE 149 >gi|325142622|gb|EGC65013.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 961-5945] Length = 405 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 47/157 (29%), Gaps = 38/157 (24%) Query: 62 NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPVFCTKIASRLTRT 112 +AP + + K + H RFD L + F G+ PV C+ SR Sbjct: 25 DAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPVLCSVQLSRCLYP 84 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 +H L ++ LGI + + A +DV AL L Sbjct: 85 QFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS---ALCDYLEYSLS 124 Query: 173 RLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 G C L +R L G + Sbjct: 125 EHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 161 >gi|307136028|gb|ADN33882.1| 3'-5' exonuclease [Cucumis melo subsp. melo] Length = 209 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 10/155 (6%) Query: 23 IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81 + +D E + + +QL G I+++ + +L L +E + Sbjct: 56 VGLDIEWRPNNRSYDNPVATLQLCIG-RRCLILQLLHIPEIPKSLFEFLENESFTFVGVG 114 Query: 82 GRFDIAVLFYTFGVRVRP---VFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK--AQ 135 D L +G++V + +A +T R GLK KE+LG I K + Sbjct: 115 IDEDAEKLNCDYGLKVGKRMDLRD--LAESVTGRGELKNAGLKRLGKEVLGKEIHKPKSV 172 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 S W + L+ Q++YA D + + Sbjct: 173 TMSRWDQEWLTLNQVKYACIDAFFSFEIGRFLQSE 207 >gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D] gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D] Length = 937 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 62/189 (32%), Gaps = 26/189 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-------- 68 VD + +DTET + P +L + LS G I +A + L Sbjct: 351 LDEVDLVCIDTETTSIDPMLAQLVGISLSVKPGEACYIPVAHRGPDVAGLDAAAQLSRDT 410 Query: 69 -------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120 L DE R+K+ + ++D V + +R + T + S + ++ N HG+ Sbjct: 411 VLARMKLWLEDESRKKVGQHLKYDAHVFANH-DIALRGIEHDTMLESYVLESHRN-HGMD 468 Query: 121 DNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + +L + K + L YAA D L K+ Sbjct: 469 ALAERVLHLKTITYEAVCGKGASQIGFDEVPLDRA-TAYAAEDADVTLRLHRTLFPKVAE 527 Query: 174 LGRSDLATS 182 + Sbjct: 528 DDKLRYVYE 536 >gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911] Length = 1440 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 32/147 (21%) Query: 22 AIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDIIRIAAGQKN-- 62 I D ET GL D L V++ G+ I + + Sbjct: 425 YIVFDVETTGLSAVYDTIIELAAVKIHDGEIIDRFESFANPHHPLSATTIDLTGITDDDV 484 Query: 63 --APNLVGMLV-----DEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLT 110 AP + +L + + H FD+ L Y G PV T +R Sbjct: 485 RNAPEVEEVLRRFKEWSQNDILVAHNASFDMGFLNTGYKRYGLGKAANPVIDTLELARFL 544 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQS 137 H L K+ + +++ ++ Sbjct: 545 LPEMKNHRLNTLAKKF-DVELTQHHRA 570 >gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413] gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413] Length = 977 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 53/171 (30%), Gaps = 25/171 (14%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAG-------QKNAPNLVGML 70 +A DTET GL PR +V + I +A L +L Sbjct: 387 PVAWDTETSGLEPRDA--ALVGIGCCWGTEADASAYIPLAHTKGENLSQDIVLTALRPIL 444 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 K F +FD V VF +AS + T H L D + LG+ Sbjct: 445 ESADYPKTFQNAKFDRLVFLVQGINLTGVVFDPMLASYVLNPDT-SHNLTDLTQRYLGLT 503 Query: 131 I-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 I K + +D + Y V L + E+L + Sbjct: 504 IQNYVDLVPKGKTIADINI----SAVANYCCLQVYATFQLVAKLREELAKT 550 >gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] Length = 909 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 13/134 (9%) Query: 9 GDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-- 65 + AA A DTET L + + V L+ I +A AP Sbjct: 318 SQLDEWLAAIEEAPLFAFDTETTSLDYMQAEIVGVALAVATDRAAYIPLAHDYPGAPEQL 377 Query: 66 --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116 L +L D +R K+ ++D VL G+ +R + + + S + ++ Sbjct: 378 DRDLVLTRLRPLLEDSQRAKVGQNLKYDANVLANY-GIALRGIAHDSMLESYVLDATGSR 436 Query: 117 HGLKDNLKELLGIN 130 H + + LG Sbjct: 437 HDMDTLALKYLGEK 450 >gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] Length = 933 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 9/93 (9%) Query: 44 LSPGDGTVD-IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA----VLFYTFGVRVR 98 L+ DG I + + L L D R K+ H D+ L Sbjct: 372 LAGADGVAAWIDPLTLEPADEQALAAWLADPDRPKVAH----DVKGPSHALLARGWTLAG 427 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 V T +A+ L R + L D L + Sbjct: 428 VVLDTALAAYLCRPDQRSYDLADLAVRHLKREL 460 >gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2] gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2] Length = 608 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 13/140 (9%) Query: 3 TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58 + HE D+ + + +DTET L + + ++Q ++ + Sbjct: 16 NVVEHEDDLDGFESFIRSSLRILGLDTETTDLGIYKPDFGIRLIQFGNP-WESWVLPVER 74 Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112 G V L +R + H FD+ V+ T GV + ++ TKI S L R Sbjct: 75 GGVFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133 Query: 113 YTNQHGLKDNLKELLGINIS 132 Y G L+EL I Sbjct: 134 YKEG-GTGHKLEELTKFYID 152 >gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421] gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421] Length = 938 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 56/182 (30%), Gaps = 27/182 (14%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---KNAPNLVGML 70 + +A DTET L PR RL + + G + +A Q +V L Sbjct: 363 DALLAQDGLVAWDTETNNLDPRHARLVGIGCAWEPGVAYYLPLAHQQGSNLETDAVVAAL 422 Query: 71 V----DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 D +R K+ ++D VL F +AS + +H L + Sbjct: 423 TPYWQDRERPKVLQNAKYDWLVLRNYGVALAGIAFDPMLASYVLDPEG-KHNLMTLAQNH 481 Query: 127 LGINI-------SKAQQSSDWSADDLSDEQL----QYAASDVVHLHALRLQFTEKLQRLG 175 L I + K Q + ++ +Y D L KL Sbjct: 482 LQITMGSYEALVPKGQT--------IDAVEIAAVSRYCGEDAAVTLRLVPVLQAKLDEDP 533 Query: 176 RS 177 R Sbjct: 534 RL 535 >gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102] gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102] Length = 463 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 61/212 (28%), Gaps = 50/212 (23%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRL---CIV-----------QL-----SPGDGTV 51 + + + VD ET G +DR+ +V QL S + Sbjct: 10 LSEAFSRLGRPVVVVDLETTGGNFYQDRITEVALVRFEQGRATHYEQLVNPCRSIPEFVA 69 Query: 52 DIIRI-AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPVF 101 + I KNAP + D + + H RFD L + F P Sbjct: 70 RLTGIHDETVKNAPVFADIAADLLPLLQGAVVVAHNSRFDYTFLRHEFARIHTDFAAPSL 129 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 CT SR +H L ++ GI + + A +DVV Sbjct: 130 CTVQLSRRLYPEFYKHSLDSIIER-TGIQTANRHR----------------AMTDVV--- 169 Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 AL L LM+ L Sbjct: 170 ALCDYLELSLTEKNHQQW-DEHVRVLMNPKML 200 >gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228] gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228] Length = 847 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 22/198 (11%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK- 74 + IA DTET + + ++ + + + V + +K Sbjct: 280 SLEQESIIAFDTETTSIDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQSAKKA 339 Query: 75 REKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E IF H ++D ++ F + + T I + L + + + + D L Sbjct: 340 IELIFKHFIIGHNLKYDFKIIENNFKLSLPQKYADTMILAWL-KNPSLRVNMDDLALRLF 398 Query: 128 GIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + K + ++++ +L +YAA D L F + L+ DLA Sbjct: 399 NYETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLEPH-LLDLA 453 Query: 181 TS-CCNFLMDRAELDLLG 197 + +F+ ++ G Sbjct: 454 KNYEFDFIKIIMMMEENG 471 >gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas acidaminovorans] gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas acidaminovorans] Length = 960 Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 38/155 (24%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGT----VDIIRI------------ 56 ++ +A+D ET GL D + +Q++ G+ V +++ Sbjct: 19 LEQLEFVAIDIETTGLNSEWDEI--IQIAGMRFKGEEVVNQFVSLVKPKGKVPKFIEHLT 76 Query: 57 ---AAGQKNAPNLVGMLVD------EKREKIFHYGRFDIAVLFY----TFGVRVRPV-FC 102 K AP + +L D + + H FD L G + + + Sbjct: 77 HISPQELKTAPPIKEVLKDFCNFIGDSIL-VGHNIGFDFNFLNQFIVDNGGFPISNMHWD 135 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T R+ +T H L + GI + A Q+ Sbjct: 136 TAEIGRIYLPFTTDHKLSTLVS-FFGIELMNAHQA 169 >gi|323452315|gb|EGB08189.1| hypothetical protein AURANDRAFT_71632 [Aureococcus anophagefferens] Length = 1677 Score = 44.2 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 25/149 (16%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD-------E 73 +AVD E G + ++QL+ V P + +L D Sbjct: 39 GQVAVDCE-WGANAAHEGASLLQLATRGLVVL--VDLLALPTTPAVHKLLADVADLAFAS 95 Query: 74 KREKIFHYGRF--DIAVLFYT-------FGVRVRPVFCTKIASRLTRTY------TNQHG 118 + + + D+ L F RV ++A + +G Sbjct: 96 RHVVVLGFDGEANDLPHLRAAWRRRGLVFPARVTRYVDVRVACARAGGWEADYDELRGYG 155 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSD 147 L + + LG + K+ + DW L++ Sbjct: 156 LAECAAKFLGRRLDKSPRDLDWRRRPLTE 184 >gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12] Length = 1450 Score = 44.2 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 49/160 (30%), Gaps = 32/160 (20%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRL-----------CIV----QL-----SPGDGT 50 + + + D ETLG ++ IV QL S Sbjct: 413 LQEDQELEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDRFSQLINPGQSIPQNI 472 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPV 100 VD+ I +N P L +L + + H FDI L P Sbjct: 473 VDVTNITDSMVQNEPKLEEVLPNFLEFIRGSILVAHNADFDIGYLKQQCKKYGYSDFNPA 532 Query: 101 F-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 F T ++ Q GL K+ LG+ + ++ D Sbjct: 533 FIDTLQMAKDLYPELKQFGLGPLNKK-LGLYLENHHRAVD 571 >gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202] gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202] Length = 931 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K H + + L T++A Sbjct: 395 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 454 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 455 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 487 >gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45] Length = 468 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 40/173 (23%) Query: 3 TIRVHEGDIPAECAARYVDAIA---VDTETLGLMPRRDRLCIVQLS----------PGDG 49 + D PA + A++ DTET GL+P +D +VQ+ PG+ Sbjct: 254 DFDLLTHDAPAAVEDTPLSALSYTVFDTETTGLLPHKDE--VVQIGAVRVLNGRIVPGEV 311 Query: 50 TVDIIRIAAGQKNAPNLVGMLVD------EKR--------------EKIFHYGRFDIAVL 89 ++ + + V + D + H FD+A L Sbjct: 312 LDLLVDPGIPIPASSSRVHKVTDAMVAGKPDIGEAGRRFHRFAKGSVIVAHNAPFDMAFL 371 Query: 90 FYTFGVRV----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 P+ T + S + + H L + LG+ I +A + + Sbjct: 372 RRHRDRMGVEWDHPILDTVLLSAVLFGASETHTLDALCQR-LGVEIPQALRHT 423 >gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca] Length = 750 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 34/182 (18%) Query: 21 DAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLV 67 +A DTET L PR L C G D+ I L Sbjct: 173 KPVAWDTETTSLEPRDANLVGIGC----CWGSELSDLAYIPLNHTQGEMLNIEQVLEALR 228 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 +L E+ K +FD ++ + G+ ++ VF T +AS + + H L D Sbjct: 229 PILESEEYPKTLQNAKFD-RLILRSQGITLKGVVFDTMLASYIINPES-SHNLTDLSLRY 286 Query: 127 L----------GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L + K + +D + ++ Y DV + + + L+ L R Sbjct: 287 LPDLGIVAQSYSQLVPKGKTIADLDINTVA----NYCGLDVFTTFQITQKMQDILKDLPR 342 Query: 177 SD 178 + Sbjct: 343 LN 344 >gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484] gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484] Length = 915 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 10/128 (7%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLV 67 GD+ AAR + VD G D + L+ G ++ + L Sbjct: 331 GDLGPWLAARAGRPLGVDVRGSGAPAGGDAWG-IALADASGQAAAFDLSQVDPADENALA 389 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQHGLKDNL 123 L D + K+ H + ++ R P+ F T++A+ L + + L D Sbjct: 390 AWLADPAQPKVVHASKE----AWHALAGRGMPLAGVTFDTELAAYLCQPDRRAYDLGDLA 445 Query: 124 KELLGINI 131 L + Sbjct: 446 IGYLRREL 453 >gi|298705893|emb|CBJ34189.1| expressed unknown protein [Ectocarpus siliculosus] Length = 333 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 14/26 (53%) Query: 139 DWSADDLSDEQLQYAASDVVHLHALR 164 DW LS+E+L YA D +L L Sbjct: 54 DWRERPLSEEKLVYARCDSHYLIPLW 79 >gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B] Length = 862 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 23/136 (16%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLK 124 L + + EKI H + + + + + VF T+IA+ L + ++ LK + Sbjct: 367 LKKLFENTS-EKIIHNAKN-LFTVLSKLDIDINNFVFDTEIAAYLIESSDKEYTLKTLFE 424 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD-LATSC 183 L + D +S E + +L L + EK++ L D L Sbjct: 425 TYL------HETYQD-----ISQE--------ISNLSNLYQRLKEKIKELQMEDLLYKIE 465 Query: 184 CNFLMDRAELDLLGWE 199 + A+++ +G++ Sbjct: 466 LPLVKVLADMEKVGFK 481 >gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680] gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680] Length = 907 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 19/139 (13%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 + + L D + K+ H + + V T +A+ L + Sbjct: 377 DPSQLDEADENAFATWLADPAKPKVLHNAKGVMRVFAEHGWTVEGVSMDTALAAYLVKPG 436 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY-----AASDVVH-----LHAL 163 L E LG + A + D QL + A +D + + L Sbjct: 437 RRSFALDALSLEYLGRELEPAATA---------DGQLAFGADEGAEADALMVQARAILDL 487 Query: 164 RLQFTEKLQRLGRSDLATS 182 F E+L+ +G +DL Sbjct: 488 GEAFGERLKEVGSADLLRD 506 >gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1] Length = 892 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K H + + L T++A Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 415 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448 >gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia goodfellowii F0264] gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia goodfellowii F0264] Length = 1438 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 39/162 (24%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD---------IIRIAA 58 PA+ + D ET GL P +D++ +++ G +D I Sbjct: 402 PADRLIEDEIYVVFDIETTGLDPYKDKI--IEIGAIKLKGKEIIDEFSVFINPEIDIPEE 459 Query: 59 G-----------------QKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR 98 + P + D + H +FD+ + G+ Sbjct: 460 ITALTNITNDMVKDAEKVETVLPKFLEFCKDTTV--VAHNAKFDVGFINQKAKNLGLEYS 517 Query: 99 P-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 P V T +R+ + GLK + + + ++ D Sbjct: 518 PSVIDTLHWARILLPEQKRFGLKY-IANYFNVVLDNHHRAVD 558 >gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] Length = 890 Score = 44.2 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K H + + L T++A Sbjct: 354 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 413 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + +A+++SD Sbjct: 414 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 446 >gi|313668201|ref|YP_004048485.1| DNA polymerase III subunit [Neisseria lactamica ST-640] gi|313005663|emb|CBN87106.1| putative DNA polymerase III subunit [Neisseria lactamica 020-06] Length = 470 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 65/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRD---RLCIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G D + +V Q + K Sbjct: 18 LLEKVFLRFGMPVAVVDLESTGGNLYEDMVTEVALVKFEQGRAERYEWLVNPQKPIPKFV 77 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + + K + H RFD L + F G+ P Sbjct: 78 AELTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + C L +R L G + Sbjct: 179 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268] gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268] Length = 938 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 26/183 (14%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR------- 75 ++ DTET + + ++ + + + +A AP + D + Sbjct: 377 VSFDTETTSIDSKSAKIVGFSFAFNEERAYYVPLAHSYLGAP--AQISSDAAKAAIDSLF 434 Query: 76 --EKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130 + ++D ++ F + F T + + L N G+ LG Sbjct: 435 RGYVVGQNLKYDFEIVKNNFNIEPPARFADTMVLAWLLDP-ANAVGMDSISPRYLGYETV 493 Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 + K + + + +L + YA+ D L + L+ LA Sbjct: 494 HFGDVVKKGETFA---SVELDAATI-YASEDAWVTLRLYFKLKGLLEPA-LFKLAQELEF 548 Query: 185 NFL 187 F+ Sbjct: 549 PFV 551 >gi|299741943|ref|XP_001832139.2| hypothetical protein CC1G_10721 [Coprinopsis cinerea okayama7#130] gi|298404955|gb|EAU89694.2| hypothetical protein CC1G_10721 [Coprinopsis cinerea okayama7#130] Length = 276 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 61/194 (31%), Gaps = 47/194 (24%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63 H IP + +V IAVD E + L R+CIVQ+ TV ++ + A Sbjct: 72 TTHPAPIP-NASTTHVPTIAVDLEGVKLNRY-GRVCIVQMKLDVSNTVWLLDVTTLGSIA 129 Query: 64 PN--------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 + + +L +KI + + R N Sbjct: 130 FDHADGEGRSVRWILQHPGIKKI-------LELAVRHSNKRPT---------------RN 167 Query: 116 QHGLKDNLKELL------------GINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 +GL +++ L GI + + L + + Y A DV L Sbjct: 168 LNGLARSIESYLSPSPQWKQVKDAGIKLFSPPHGSYEVFEQRPLDERIMVYCAQDVTLLG 227 Query: 162 ALRLQFTEKLQRLG 175 L + L R G Sbjct: 228 VLEVVLRRWLGRFG 241 >gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens NRL30031/H210] gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens NRL30031/H210] Length = 463 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 60/212 (28%), Gaps = 50/212 (23%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRL---CIV-----------QL-----SPGDGTV 51 + + + VD ET G +DR+ +V QL S + Sbjct: 10 LSEAFSRLGRPVVVVDLETTGGNFYQDRITEVALVRFEQGRATHYEQLVNPCRSIPEFVA 69 Query: 52 DIIRI-AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPVF 101 + I KNAP + D + + H RFD L + F P Sbjct: 70 RLTGIHDETVKNAPVFADIAADLLPLLQGAVVVAHNSRFDYTFLRHEFARIHTDFAAPSL 129 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 CT SR +H L ++ GI + + A +DV Sbjct: 130 CTVQLSRRLYPEFYKHSLDSIIER-TGIQTANRHR----------------AMTDV---A 169 Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 AL L LM+ L Sbjct: 170 ALCDYLELSLAEKNHQQW-DEHVRVLMNPKML 200 >gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] Length = 640 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 24/149 (16%) Query: 42 VQLSPGDGTVDIIRIA-AGQKNAPN-------LVGMLVDEKREKIFHYGRFDIAVLFYTF 93 + S +GT + + +NA N L + + K+ H F+ L+ Sbjct: 52 ISFSVSEGTAIYVPLKHRSGRNAENQAAIWDYLKLLFESKDVIKVAHNLAFESMFLYARG 111 Query: 94 GVRVRPVFCTKIASRLT-------RTYTNQHGLKDNLKELLGINISKAQQSSDWSAD--- 143 V +P + T AS+LT R+ + GLK L +++ + Sbjct: 112 IVLQKPCYDTIAASQLTLKSKWEFRSLADS-GLKTLAPALCKAEMTEFSTVT--EGRFFD 168 Query: 144 ---DLSDEQLQYAASDVVHLHALRLQFTE 169 ++ ++YA +D + L F + Sbjct: 169 ELNPQDEKTVRYACADSDYTLRLYHVFNQ 197 >gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens] gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens] Length = 289 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 30/104 (28%), Gaps = 21/104 (20%) Query: 78 IFHYGRFDIAVLFYTFGVR------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 I H G FDI + F V T + +R L NI Sbjct: 99 IIHNGHFDIKFINNEFQKLNIPEISFERVIDTMLMARKL-YPRQPASLDSLCDRF---NI 154 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 K S+ L A +DV L + + + LG Sbjct: 155 DK-------SSRSLGHG----ALTDVKLLQLVYAKLLKDQDALG 187 >gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] Length = 1033 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 35/210 (16%) Query: 2 TTIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 TIR + AR DA +AVD + P + LC + L+ I + Sbjct: 423 KTIRTLDE--LHGWIARIHDAGFVAVDAIATSIDPMQAELCGIALALAPNDAAYIPLGHR 480 Query: 60 QK----------NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 Q AP+ L +L KI +F AVL G+ +R Sbjct: 481 QTGDGSGLFAAGLAPDQLGAREALDALKPLLESAGLAKIGFNIKF-TAVLLAQHGITLRN 539 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYA 153 + ++ S HGL + LG + + + + +Q+ +YA Sbjct: 540 IDDLQLMSYALDAGRGSHGLDALSESNLGHTLHALGELTGSGKAKIGFDQVPIERATEYA 599 Query: 154 --ASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +DV L +L + Sbjct: 600 GERADVA--LRLWRVLKPRLVAERMMAVYE 627 >gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641] gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641] Length = 1463 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 42/164 (25%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDII-- 54 I +E D+ + D ET GL D ++Q++ G+ + Sbjct: 410 PITYNEVDLD----LHEATYVVFDVETTGLSAIYND---LIQVAASKMHKGNIIAEFDEF 462 Query: 55 -----RIAAGQKN-----------APNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89 I+A + A L +L + + + H FD+ + Sbjct: 463 INPGHPISAFTTDLTGITDDHVRNAKPLKQVLEEFQEFCQDAVLVAHNATFDVGFMNANY 522 Query: 90 -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + +PV T +R +HGL K G+ + Sbjct: 523 ERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|325136504|gb|EGC59108.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579] Length = 469 Score = 44.2 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 17 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 76 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 77 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 136 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 137 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 177 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 178 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 225 >gi|123975110|ref|XP_001330198.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] gi|121896186|gb|EAY01345.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] Length = 342 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 13/132 (9%) Query: 35 RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-REKIFHYGRFDIAVLFYTF 93 ++ + + Q + D +IR Q + L L K D+ L F Sbjct: 78 FQNHISLFQFAT-DNCALLIRHLPPQPS-EILKEFLETHSFIGK---STGNDMRKLKDLF 132 Query: 94 GVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI----SKAQQSSDWSADDLSDE 148 G + + IAS + D + +G + K S+W L+ Sbjct: 133 GTDINVKIED--IASNRLCPHGFSRNFHDMVATFVGPPLFSIKDKTVTLSNWERPKLAII 190 Query: 149 QLQYAASDVVHL 160 Q+ YAA DV+ L Sbjct: 191 QVLYAAFDVIAL 202 >gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402] gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402] Length = 1434 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 36/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS------------------PGDGTVDI 53 P + + + + D ET GL + D++ ++L+ PG+ + Sbjct: 408 PQDRSLKDATYVVFDVETTGLSSQYDKI--IELAAVKVKDGEIIDKFERFSNPGERLNET 465 Query: 54 IRIAAGQK-----NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRVR 98 I+ G +AP + +L D + H FD+ + F G Sbjct: 466 IKNLTGITDDMLIDAPPIESVLNDFKDFVGDAIYVAHNASFDMGFIDTGFDRLGYGPTEN 525 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T SR T +HGL K+ G+ +++ ++ Sbjct: 526 GVIDTLELSRTINTEMGKHGLNFLAKKY-GVELTQHHRA 563 >gi|145520595|ref|XP_001446153.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124413630|emb|CAK78756.1| unnamed protein product [Paramecium tetraurelia] Length = 1331 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 61/209 (29%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRIAAGQKNAPNLV--------- 67 V+ I +D E R+ + +VQ+ + I + + +LV Sbjct: 842 VNYIGIDLE---GQLRKGDIWLVQMGVMVENLRIIFIFDLMKAKYLEADLVFHEQMLSVI 898 Query: 68 -GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT----------------------- 103 +L DE K+FH + D L + + R + T Sbjct: 899 RSILEDEGICKVFHDCKRDSQAL-HINQICPRNIADTSSTYIFLESLKLNDQEQKKVKKN 957 Query: 104 ---------KIAS----RLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDE 148 ++A+ + Y HG + +E+ +K ++ D+ A + Sbjct: 958 PVQISKEVLQVATPPINSVLTKYGAMHGGNELKEEM----HAKFNNCKADDFFARP-NPA 1012 Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLGRS 177 + Y+A DV L + LQ E L R Sbjct: 1013 FMYYSARDVEDLVQVYLQM-EMLALEYRY 1040 >gi|261392288|emb|CAX49811.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013] Length = 470 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 18 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 78 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|325130506|gb|EGC53261.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis OX99.30304] Length = 470 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 18 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 78 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|225437612|ref|XP_002271430.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 196 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 23/162 (14%) Query: 23 IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +D E L +R+ +QL D I+++ + L + + Sbjct: 43 VGLDCEWSPTFLSGTS--NRIATLQLCV-DTKCLILQLFYTDYIPQSFKNFLSNPAVTFV 99 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTK-------IASRL-TRTYTNQHGLKDNLKELLGIN 130 + V +R + +A + + GLKD +++G+ Sbjct: 100 G------VEVESDAMKLRDEYELDCQETSNIRALACSFWPNRWYRRPGLKDLAFQIVGLL 153 Query: 131 ISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + K SS+W A LS+EQ++YA+ D + + + ++ Sbjct: 154 MQKPIHVCSSNWEARILSNEQVEYASIDAYASYRIGHRLLKE 195 >gi|125527632|gb|EAY75746.1| hypothetical protein OsI_03659 [Oryza sativa Indica Group] Length = 208 Score = 44.2 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 15/145 (10%) Query: 22 AIAVDTETLGLMPRR---DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +D E + ++Q+ G I +I +L L D + + Sbjct: 53 VVGLDVE-WRPATYYHGPGPVAVLQICVG-RRCLIFQILHADYVPDSLFDFLADGRFTFV 110 Query: 79 ---FHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISK 133 H D+A L + V +A++ GL+ ++E++G+ K Sbjct: 111 GVGIHD---DVAKLRSHHELEVENAVDLRYLAAQTIGKPALRSAGLQGLVREVMGVWAPK 167 Query: 134 AQ--QSSDWSADDLSDEQLQYAASD 156 + S W + +L+ EQ+ YA +D Sbjct: 168 PYHVRVSAWDSWNLTPEQVMYACAD 192 >gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379] gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] Length = 903 Score = 43.8 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 19/137 (13%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 + + + + D R K+ H + + VL T +A+ L + Sbjct: 372 LDPTQLEEADEQAFAAWVSDPARPKVLHNAKNVMRVLPEHGWQLEGVTMDTALAAYLVKP 431 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLHA 162 L E LG ++ A + D QL + A D + Sbjct: 432 GRRSFALDALAVEYLGRELAPAAAA---------DGQLAFGADDRAEQDALMAQARAVLD 482 Query: 163 LRLQFTEKLQRLGRSDL 179 L FT +L+ +G ++L Sbjct: 483 LGDAFTTRLKEVGAAEL 499 >gi|308389143|gb|ADO31463.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis alpha710] Length = 461 Score = 43.8 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 9 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 69 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 170 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217 >gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08] Length = 920 Score = 43.8 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 3/94 (3%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105 DG A + + L D + K H + + L G V + T++ Sbjct: 384 DGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEAL-AGRGWEVAGLTCDTEL 442 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 AS L H D ++ L + + + +++SD Sbjct: 443 ASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSD 476 >gi|195571747|ref|XP_002103864.1| GD20659 [Drosophila simulans] gi|194199791|gb|EDX13367.1| GD20659 [Drosophila simulans] Length = 541 Score = 43.8 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 46/157 (29%) Query: 18 RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75 + + D E T+G RR + ++QLS G + R+ ++ +L +L D+ Sbjct: 75 QTFKVLGFDCEWITVGG-SRRP-VALLQLSSHRGLCALFRLCHMKQIPKDLRELLEDDDV 132 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ + D L + +GV V L+ Sbjct: 133 IKVGVAPQEDAMKLSHDYGVGVASTLD----------------LRFLC------------ 164 Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L YAA+D + A+ + LQ Sbjct: 165 --------------LDYAANDALMAVAIYQKLCRDLQ 187 >gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] Length = 643 Score = 43.8 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102 S DG V +I +A G+ ++ L DE EK F+ L G R++P +C Sbjct: 38 SINDGEVKVIDLANGEIIPEEILSALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYC 97 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 T I S L+ + E+L + K Sbjct: 98 TMIWSAYLGLPL---SLEK-VGEVL--KLDKQ 123 >gi|225440185|ref|XP_002278268.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297741701|emb|CBI32833.3| unnamed protein product [Vitis vinifera] Length = 208 Score = 43.8 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 21/157 (13%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 ARY + +A+ +QL G I ++ + +L+ L D Sbjct: 66 ARYTNPVAI----------------LQLCVG-RRCLIFQLLYAPEIPTSLIDFLGDTDYT 108 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTY-TNQHGLKDNLKELLGINISK- 133 + + D L +RV V + A+R+ T G+K +E+LG + K Sbjct: 109 FVGVGIQADSQKLLNDHNLRVGNVVDLAVLAARVLNTRELRNAGIKRLAREVLGREVEKP 168 Query: 134 -AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 S W D LSD Q+ YA D + Sbjct: 169 KHVARSRWDTDWLSDAQVHYACVDAFVSFEVGRCLNA 205 >gi|123417028|ref|XP_001305017.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] gi|121886508|gb|EAX92087.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3] Length = 382 Score = 43.8 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 25/165 (15%) Query: 14 ECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG- 68 E D IA+D E + Q++ + ++R A L Sbjct: 56 EWLDDGTDRIAIDLEWKPNFDKTRGEYP-ASVFQMATP-HKIVVLRHPADLPGNEILKKF 113 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKD-----N 122 ++ + K + D + FG + R Y +G Sbjct: 114 LMTHKFIAK---GCKTDRTKMQQKFGPDFSIDLLD------FERLYLIPNGFSSNFDAMV 164 Query: 123 LKELLGINI---SKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 ++ +I K S+W AD L+ +Q+ YA D L Sbjct: 165 VEFYKNSSIEFKDKNVTCSNWQADVLTTQQVLYAGFDATALMKSY 209 >gi|304387160|ref|ZP_07369404.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC 13091] gi|304338764|gb|EFM04874.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC 13091] gi|325201850|gb|ADY97304.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis M01-240149] Length = 470 Score = 43.8 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 18 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 78 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435] gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus haemolyticus JCSC1435] Length = 1438 Score = 43.8 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PTDRDLKEATYVVFDVETTGLSNQYDQIIELAAVKVKDGE-IIDKFERFSNPHEKLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 STAYIFIKMVQQMKELG 589 >gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium ATCC 27725] Length = 1446 Score = 43.8 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 42/164 (25%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRL-----------CIV----QLSPGDGTV--- 51 DIP E + + D ET+GL + IV QL T+ Sbjct: 412 DIPIE----EENFVVFDLETMGLNSHEHEIIEIGAVKLQGTRIVERYSQLVNPKKTIPKK 467 Query: 52 ----------DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----- 96 + + ++ P + + D + H FD+ + Sbjct: 468 IQELTNISQDMVDNMPTIEEVLPKFMEFVGDS--TMVAHNAPFDMGFIRRDVKKIMGYDY 525 Query: 97 -VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 V T +R +GLK+ ++LG+++ ++ D Sbjct: 526 KPA-VIDTLQMARDLYPELKAYGLKNL-NKVLGLSLDNHHRAVD 567 >gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN] gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN] Length = 926 Score = 43.8 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 13/120 (10%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69 + +A+DTET L R + + S G I +A +AP L Sbjct: 349 AELVALDTETTSLDEMRAEIVGISFSVQPGEAAYIPLAHTGPDAPEQLPLGEVLARLKPW 408 Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG 128 L D + K+ + ++D V + VR V T + S + + HGL + G Sbjct: 409 LEDARYPKLGQHVKYDRHVFANH-DIDVRGYVHDTMLQSYVLEVHKP-HGLASLAERHTG 466 >gi|218768453|ref|YP_002342965.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491] gi|121052461|emb|CAM08798.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491] Length = 470 Score = 43.8 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 18 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 78 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacterales bacterium Y4I] gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family [Rhodobacterales bacterium Y4I] Length = 469 Score = 43.8 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 56/200 (28%), Gaps = 54/200 (27%) Query: 13 AECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSP----------GDGTVDIIRIAAG 59 AE +R + + DTET GL+P +D + VQ+ G+ ++ Sbjct: 265 AELDSRKLSNLSYVVFDTETTGLLPHKDEI--VQIGALRVVRNRIVAGEQFGTLVDPGTP 322 Query: 60 QKNAPNLVGMLVD------EKR--------------EKIFHYGRFDIAVLFYTFGVRV-- 97 A V + D + H FD+A L Sbjct: 323 IPAASTKVHGISDAMVQGAPDIGQAARAFHRFASDAVIVAHNAPFDMAFLRRHAKRAGVS 382 Query: 98 --RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155 +PV T + S + + H L + L + I A Sbjct: 383 WDQPVLDTVLLSAVLFGASQSHTLDALCER-LEVTI--------------PPALRHTAMG 427 Query: 156 DVVHLHALRLQFTEKLQRLG 175 D + + L+ G Sbjct: 428 DAQATAEVFCKMLPMLEARG 447 >gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942] gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942] Length = 787 Score = 43.8 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 38/203 (18%) Query: 3 TIRVHEG-----DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---I 54 T+ HEG + + A + +A+DTET G+ DR V LS D+ Sbjct: 125 TVNTHEGMEWVLSLFEDSYALGAE-VALDTETTGVEW-WDRT--VGLSLTFEFGDVEENF 180 Query: 55 RIAAGQKN----------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102 I G + L L + + + H +FD +L G+ +R F Sbjct: 181 YIPYGHTSDHEQLTRGYVMKKLKPHLEKKGTKLVLHNSKFDSHMLLKD-GITIRNNIYFD 239 Query: 103 TKIASRLTRTYTNQHGLKDNLKEL---LGINISKAQQSSD-WSADD---LSDEQLQ---- 151 T IA + + GLK + G K+ + +S S+E ++ Sbjct: 240 TMIAHSVLNENDEK-GLKAIATKYGRFFGFE-DKSMSFGELFSNKPEAFYSNESMELCTF 297 Query: 152 YAASDVVHLHALRLQFTEKLQRL 174 YA D L +++ Sbjct: 298 YACKDTHLCLKLYKWQLSMMKKQ 320 >gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590] gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590] Length = 1438 Score = 43.8 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PTNRDLKDATYVVFDVETTGLSNQYDQIIELAAVKVYDGE-IIDKFERFSNPHQKLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLTDAPEIDEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERIGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMLQQMKELG 589 >gi|303281024|ref|XP_003059804.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458459|gb|EEH55756.1| predicted protein [Micromonas pusilla CCMP1545] Length = 306 Score = 43.8 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 59/192 (30%), Gaps = 40/192 (20%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAGQKNAPNLVGM 69 A +AVD E P +VQ+ D + + + + NL + Sbjct: 121 DALWACAPSVVAVDVEGNQRTP----PVLVQVCARVGADTLCVLETPSVAEGLSENLRRL 176 Query: 70 LVDEKREKIFHYGRF--DIAVLFYTFGVR-VRPVFCTK-IASRLTRTYTNQHGLKDNLK- 124 L D+ K+F G D + GVR V + +A+ L Q GL L Sbjct: 177 LDDDAIVKVFCDGTSGAD----KRSLGVRSTCNVLDLEHVATELAGATGVQRGLARILNL 232 Query: 125 -------ELLGINISKA--------QQSSDWSADDLS------DEQLQYAASDVVHLHAL 163 + K+ ++ + LS + ++YAA D Sbjct: 233 AWPDATVRVTKDAAEKSSVKFFAAIERGT---RPPLSGLHDIPPDVVRYAAMDAWCTLLA 289 Query: 164 RLQFTEKLQRLG 175 +R G Sbjct: 290 HQGLQLLARREG 301 >gi|319410698|emb|CBY91078.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594] Length = 461 Score = 43.8 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 9 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 69 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 170 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217 >gi|325208398|gb|ADZ03850.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis NZ-05/33] Length = 469 Score = 43.8 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 17 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 76 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 77 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 136 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 137 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 177 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 178 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 225 >gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1] Length = 892 Score = 43.8 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 3/94 (3%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105 DG A + + L D + K H + + L G V + T++ Sbjct: 356 DGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEAL-AGRGWEVAGLTCDTEL 414 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 AS L H D ++ L + + + +++SD Sbjct: 415 ASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSD 448 >gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2] gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3] Length = 883 Score = 43.8 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 3/94 (3%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105 DG A + + L D + K H + + L G V + T++ Sbjct: 347 DGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEAL-AGRGWEVAGLTCDTEL 405 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 AS L H D ++ L + + + +++SD Sbjct: 406 ASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSD 439 >gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana] gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana] gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana] Length = 1049 Score = 43.8 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 50/176 (28%), Gaps = 41/176 (23%) Query: 44 LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 G + + + G++ D K++H FD ++ G+ + Sbjct: 325 FGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFHA 383 Query: 102 CTKIASRL---TRTYTNQHGLKDNLK--ELLGIN--------ISKAQQSSDWSADDLS-- 146 T +RL R + L+ ++LG + K + + L Sbjct: 384 DTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKD 443 Query: 147 --------------------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + Y+A D + L T+KLQ D Sbjct: 444 GSEGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQ---LMDWHLD 496 >gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana] Length = 1067 Score = 43.8 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 50/176 (28%), Gaps = 41/176 (23%) Query: 44 LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 G + + + G++ D K++H FD ++ G+ + Sbjct: 324 FGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFHA 382 Query: 102 CTKIASRL---TRTYTNQHGLKDNLK--ELLGIN--------ISKAQQSSDWSADDLS-- 146 T +RL R + L+ ++LG + K + + L Sbjct: 383 DTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKD 442 Query: 147 --------------------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + Y+A D + L T+KLQ D Sbjct: 443 GSEGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQ---LMDWHLD 495 >gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana] Length = 1050 Score = 43.8 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 50/176 (28%), Gaps = 41/176 (23%) Query: 44 LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 G + + + G++ D K++H FD ++ G+ + Sbjct: 326 FGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFHA 384 Query: 102 CTKIASRL---TRTYTNQHGLKDNLK--ELLGIN--------ISKAQQSSDWSADDLS-- 146 T +RL R + L+ ++LG + K + + L Sbjct: 385 DTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKD 444 Query: 147 --------------------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 + + Y+A D + L T+KLQ D Sbjct: 445 GSEGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQ---LMDWHLD 497 >gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis] Length = 931 Score = 43.8 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 57/191 (29%), Gaps = 49/191 (25%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVG 68 D +A+DTET L R ++ + S G I + +AP L Sbjct: 353 QADLVALDTETSALDAMRAQIVGLSFSVQPGEAAYIPLRHEGPDAPVQLPLEQVLARLKP 412 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELL 127 L D + K+ + ++D V G+ VR V T + S + + H L + Sbjct: 413 WLEDARHAKLGQHIKYDRHVFANH-GIEVRGYVHDTMLQSYVLEVHKP-HNLASLAERHT 470 Query: 128 G---------------------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 G +++ KA YA D + Sbjct: 471 GRTGLNYEDLCGKGVHQIPFAQVSVDKAAT---------------YACEDSDQTLEVHQT 515 Query: 167 FTEKLQRLGRS 177 LQ R Sbjct: 516 LWPLLQANERL 526 >gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group] Length = 1032 Score = 43.8 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 35/168 (20%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G+ D K++H FD V+ G++V Sbjct: 322 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENY-GIKVAGFHAD 380 Query: 103 TKIASRL---TRTYTNQHGLKDNL--KELLGI---NISKAQQSS-----DW--------- 140 T +RL +R + L+ ++G+ + K + S W Sbjct: 381 TMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSA 440 Query: 141 -----------SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 D + + Y++ D + L KL++ + Sbjct: 441 GKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYESLKSKLEKKHWT 488 >gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1] Length = 412 Score = 43.8 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 7/89 (7%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRVR-PVFCTKIASR 108 ++ P + D + H FD+ L G+R PV T I S Sbjct: 281 VVDKPPAGVVLPQFRSYVADA--VLVAHNAAFDLKFLRMREKDMGIRFDIPVLDTMILSN 338 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQS 137 H L D GI I+ + Sbjct: 339 FLDGPDAGHSLDDICDRY-GIEITDRHTA 366 >gi|325128513|gb|EGC51390.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568] Length = 470 Score = 43.8 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 18 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVIEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 78 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS] gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS] Length = 937 Score = 43.8 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 13/115 (11%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEK 74 +DTET L ++ V S G I + +AP L L + + Sbjct: 365 IDTETTSLDEMVAQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPIDEVLAKLKPWLENPE 424 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG 128 ++K+ + ++D V G+ V T + S + + HGL + LG Sbjct: 425 KKKLGQHIKYDRHVFANH-GIEVEGYAHDTMLQSYVLEVHKP-HGLASLAERHLG 477 >gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group] Length = 1000 Score = 43.8 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 35/168 (20%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G+ D K++H FD V+ G++V Sbjct: 322 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENY-GIKVAGFHAD 380 Query: 103 TKIASRL---TRTYTNQHGLKDNL--KELLGI---NISKAQQSS-----DW--------- 140 T +RL +R + L+ ++G+ + K + S W Sbjct: 381 TMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSA 440 Query: 141 -----------SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 D + + Y++ D + L KL++ + Sbjct: 441 GKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYESLKSKLEKKHWT 488 >gi|70916832|ref|XP_732646.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56503713|emb|CAH85281.1| hypothetical protein PC301478.00.0 [Plasmodium chabaudi chabaudi] Length = 179 Score = 43.8 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKRE 76 + +D ET GL +++ ++Q++ + V I + N L +L DE Sbjct: 120 GIKYCGLDMETTGLEVFGEKIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIV 179 >gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group] gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group] gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group] Length = 1033 Score = 43.4 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 50/181 (27%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G+ D +K++H FDI V+ G++V Sbjct: 321 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPFIKKVWHNYSFDIHVIEN-CGIKVAGFHAD 379 Query: 103 TKIASRL---TRTYTNQHGLKDNLKEL--------------------------------- 126 T +RL +R + L+ + Sbjct: 380 TMHLARLWDSSRRTDGGYSLEGLTNDYRVMDAVLKDIPKTGKVSMKTIFGRKKVRKDGSE 439 Query: 127 ---LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + I + Q D +L + Y++ D + L KL+ + Sbjct: 440 GKTISIEPVEKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAK---EWIFDD 490 Query: 184 C 184 C Sbjct: 491 C 491 >gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa] Length = 976 Score = 43.4 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 50/181 (27%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G+ D +K++H FDI V+ G++V Sbjct: 264 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPFIKKVWHNYSFDIHVIEN-CGIKVAGFHAD 322 Query: 103 TKIASRL---TRTYTNQHGLKDNLKEL--------------------------------- 126 T +RL +R + L+ + Sbjct: 323 TMHLARLWDSSRRTDGGYSLEGLTNDYRVMDAVLKDIPKTGKVSMKTIFGRKKVRKDGSE 382 Query: 127 ---LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + I + Q D +L + Y++ D + L KL+ + Sbjct: 383 GKTISIEPVEKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAK---EWIFDD 433 Query: 184 C 184 C Sbjct: 434 C 434 >gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1437 Score = 43.4 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 29/145 (20%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTR 111 + P V + D + H RFD+ + P T +RL Sbjct: 486 PDIAEELPKFVEFVGDA--VLVAHNARFDMGFIQANLKNIGMPELPNPSLDTLELARLLF 543 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 H L + +++ + A D V L + ++ Sbjct: 544 PSLKNHRLNTLADKF-KVSLENHHR----------------AIDDTVALMHILNHLLQEA 586 Query: 172 QRLGRSDLATSCCNFLMDRAELDLL 196 + + L N L D DL Sbjct: 587 EEQNLTQL-----NRLNDHVGKDLR 606 >gi|268686367|ref|ZP_06153229.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] gi|268626651|gb|EEZ59051.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] Length = 264 Score = 43.4 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 18 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 78 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLREQLYGLPD 226 >gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 1450 Score = 43.4 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 32/160 (20%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRL-----------CIV----QL-----SPGDGT 50 + + + D ETLG ++ IV QL S Sbjct: 413 LKEDQDLEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDRFSQLVNPGQSIPQNI 472 Query: 51 VDIIRIAAGQ-KNAPNLVGML---VD--EKREKIFHYGRFDIAVLFYTFGVR----VRPV 100 VD+ I +N PN+ +L +D E + H FDI L + P Sbjct: 473 VDVTNITDSMVQNEPNIEEVLPKFLDFIEGSILVAHNADFDIGYLKQQCKQQGYSDFNPS 532 Query: 101 F-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 F T ++ Q GL K+ LG+++ ++ D Sbjct: 533 FIDTLQMAKDLYPELKQFGLGPLNKK-LGLSLENHHRAVD 571 >gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R] Length = 1450 Score = 43.4 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 32/160 (20%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRL-----------CIV----QL-----SPGDGT 50 + + + D ETLG ++ IV QL S Sbjct: 413 LKEDQDLEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDRFSQLVNPGQSIPQNI 472 Query: 51 VDIIRIAAGQ-KNAPNLVGML---VD--EKREKIFHYGRFDIAVLFYTFGVR----VRPV 100 VD+ I +N PN+ +L +D E + H FDI L + P Sbjct: 473 VDVTNITDSMVQNEPNIEEVLPKFLDFIEGSILVAHNADFDIGYLKQQCKQQGYSDFNPS 532 Query: 101 F-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 F T ++ Q GL K+ LG+++ ++ D Sbjct: 533 FIDTLQMAKDLYPELKQFGLGPLNKK-LGLSLENHHRAVD 571 >gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU121] Length = 1438 Score = 43.4 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 50/196 (25%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PTDRDLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHEKLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 I + + AP + +L D + H FD+ + FG Sbjct: 471 INLTHITDDMLTDAPEIEDVLTDFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTNG 530 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159 V T SR T +HGL K+ G+++++ + A D Sbjct: 531 VIDTLELSRTINTEYGKHGLNFLAKKY-GVDLTQHHR----------------AIYDTEA 573 Query: 160 LHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 574 TAYIFIKMVQQMKELG 589 >gi|298205234|emb|CBI17293.3| unnamed protein product [Vitis vinifera] Length = 301 Score = 43.4 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 26/120 (21%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 D I G A + V + D K D+ L Y +A++ Sbjct: 174 AADPTSIKVGVGIANDAVKVFKDHSVSVK-------DLEDLSY-------------LANQ 213 Query: 109 LTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDV---VHLHAL 163 + GL + L+ + K + +W AD LS QL+YAA+D +L+ + Sbjct: 214 KLGGDAKKWGLGSLTEMLISKQLLKPNKIRLGNWEADVLSKAQLEYAATDAFASWYLYEV 273 >gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1 BON] gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1 BON] Length = 288 Score = 43.4 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 34/115 (29%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD----------------IIRIAAGQK 61 + +A+D ET GL P D++ ++++ DG + I RI Sbjct: 114 EFVAIDLETTGLNPINDKI--IEVAAVKFKDGQIIDRFTTLINPEIHIPSGITRINHITD 171 Query: 62 ----NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYT---FGVRVRPVF-CT 103 +AP L ++ E + H FD+ L + FG + + T Sbjct: 172 EMVKDAPVLAEVMPCLVNFIEDSILVMHNASFDLKFLKHHAMNFGHDINNSYIDT 226 >gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis 2002] gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 1402 Score = 43.4 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 54/194 (27%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLS-----------------PGDGTV------------D 52 + VD ET G +RD++ +++ +G + D Sbjct: 390 FVVVDIETTGFDSQRDKI--IEIGAVKIENGQIIERFSTFVDPEGKIPVRISELTGIYQD 447 Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASR 108 ++ A +A + H +FDI L ++ G+ T SR Sbjct: 448 MVDKAPKLNDAILEFEKFASGSIL-VAHNAQFDIGFLKKAYHECGIIFDYTYIDTLELSR 506 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 T + H L + E L + + K +D SD + Sbjct: 507 RLLTDLSSHKLNK-VAEFLNVEL-KHHHRAD---------------SDAETTAGIFTSLL 549 Query: 169 EKLQRLGRSDLATS 182 EKL+ G Sbjct: 550 EKLKLRG-YKWLKE 562 >gi|269214643|ref|ZP_05986966.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria lactamica ATCC 23970] gi|269209302|gb|EEZ75757.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria lactamica ATCC 23970] Length = 470 Score = 43.4 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 68/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 18 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 ++ I+ G +AP + + K I H RFD L + F G+ P Sbjct: 78 AELTGISDGMVADAPVFAEIAGELFSVLKGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp. lyrata] gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp. lyrata] Length = 1047 Score = 43.4 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 56/186 (30%), Gaps = 42/186 (22%) Query: 47 GDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTK 104 G + + + G++ D K++H FD ++ G+ + T Sbjct: 324 GKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFHADTM 382 Query: 105 IASRL---TRTYTNQHGLKDNLK--ELLGIN--------ISKAQQSSDWSADDLS----- 146 +RL R + L+ ++LG + K + + L Sbjct: 383 HMARLWDSARRIEGGYSLEALTSDPKVLGGTQTKEEADFLGKISMKTIFGKRKLKKDGSE 442 Query: 147 -----------------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189 + + Y+A D + L T+KLQ D +++ Sbjct: 443 GKMVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQ---MMDW-RLDGKPVLE 498 Query: 190 RAELDL 195 R LD Sbjct: 499 RTMLDF 504 >gi|124513960|ref|XP_001350336.1| exonuclease, putative [Plasmodium falciparum 3D7] gi|23615753|emb|CAD52745.1| exonuclease, putative [Plasmodium falciparum 3D7] Length = 713 Score = 43.4 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 17/35 (48%) Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 Q ++W+ L+ EQ+ YA D L + EK Sbjct: 650 QLANWNIRPLNQEQIIYACIDSYVLIKIEEMLIEK 684 >gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254] gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254] Length = 1151 Score = 43.4 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 39/152 (25%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDI---IRIAA----------- 58 + D ET G P D++ +++ G+ + + I I Sbjct: 117 YVVFDIETTGFDPFNDKI--IEIGAVKMRGREIIGEFSEFVNPEIPIPPKITELTTITDE 174 Query: 59 -------GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIAS 107 + P + D + H +FD+ + G+ P V T + Sbjct: 175 MVANAEKIETVLPRFLEFCTDTTV--VAHNAKFDVGFIKQKTIEQGLEYSPSVIDTLPLA 232 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 R + +GL + +K GI + ++ D Sbjct: 233 RTLLPDSRGYGLANLVK-YFGITLETHHRAVD 263 >gi|242048942|ref|XP_002462215.1| hypothetical protein SORBIDRAFT_02g021856 [Sorghum bicolor] gi|241925592|gb|EER98736.1| hypothetical protein SORBIDRAFT_02g021856 [Sorghum bicolor] Length = 335 Score = 43.4 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 8/154 (5%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHY 81 + +DTE + ++ ++Q+ + + ++ AG ++ V E + Sbjct: 135 VGLDTEHA-EYEGKKKIALIQICV-NTRCLLFQVGVAGGCIPDDIKSFFVRENHVFVGVA 192 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLT--RTYTNQHGLKDNLKELLGINISK---AQQ 136 D+ +L + + + + N L ELLG+ K + Sbjct: 193 IANDMDLLRQHHNIELSKKVELQAMVPFVIQGKWCNVPSLASIGLELLGVVAGKNNPKLR 252 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 DW L+DEQ++YA +D + + + Sbjct: 253 YKDWHKKSLADEQIKYACTDAFVSYKVGEMLQSQ 286 >gi|268603417|ref|ZP_06137584.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1] gi|268587548|gb|EEZ52224.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1] Length = 264 Score = 43.4 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 18 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 78 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLREQLYGLPD 226 >gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563] gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563] Length = 926 Score = 43.4 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 12/186 (6%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-----AGQKNAPNLVGMLVDEKREK 77 + VD ET GL +D + + + + ++ K + L E + Sbjct: 358 VCVDFETTGLDVFKDTIIGISFAIRSNEAFYLDVSGRTNIDKDKCIDMVFETLAKEDIKV 417 Query: 78 IFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I H +++ ++ + F T +A+ L ++ + D L N K Sbjct: 418 IGHNLKYEYKMM-RAINKSFGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSD 476 Query: 137 SSDWSADDLSD----EQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRA 191 +D + L D + ++YA D F L+ +L + A Sbjct: 477 ITDNAKKTLLDVPLKDVVEYACEDADITFRFYECFAPLLKTHNLEELFFNIEMPLVSVLA 536 Query: 192 ELDLLG 197 +++ G Sbjct: 537 DMEFDG 542 >gi|240117716|ref|ZP_04731778.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID1] Length = 255 Score = 43.4 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 9 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 69 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLREQLYGLPD 217 >gi|240127974|ref|ZP_04740635.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035] Length = 255 Score = 43.4 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 9 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 69 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLREQLYGLPD 217 >gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386] gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386] Length = 1421 Score = 43.4 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 41/163 (25%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD--------------- 52 P + + I D ET G P +D++ +++ G +D Sbjct: 389 PKDAMIEQEEYIIFDIETTGFDPYKDKI--IEIGAVKLKGRNIIDRFSAFVNPEVPIPEE 446 Query: 53 IIRIAAGQKN-----------APNLVGMLVDEKREKIFHYGRFDIAVL-----FYTFGVR 96 II++ + P + D + H +FD+ L Sbjct: 447 IIKLTNITDDMVKDAELIDTVLPRFLEFCGD--CTMVAHNAKFDVGFLTQKARQLELEFL 504 Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 V T +R+ T + LK I++ ++ D Sbjct: 505 PS-VIDTLYWARVLITDLKRFNLKAL-ANYFNISLDNHHRAVD 545 >gi|322818895|gb|EFZ26176.1| hypothetical protein TCSYLVIO_7655 [Trypanosoma cruzi] Length = 202 Score = 43.4 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 15/31 (48%) Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 W L D L+YAA DV H+ L EK Sbjct: 32 WDIRPLPDHFLEYAADDVRHILLLANHLVEK 62 >gi|254805232|ref|YP_003083453.1| putative DNA polymerase III subunit [Neisseria meningitidis alpha14] gi|254668774|emb|CBA06684.1| putative DNA polymerase III subunit [Neisseria meningitidis alpha14] Length = 461 Score = 43.4 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 9 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 69 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 170 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217 >gi|168211075|ref|ZP_02636700.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC 3626] gi|170710890|gb|EDT23072.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC 3626] Length = 642 Score = 43.4 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 28/115 (24%) Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLT-------RTYTNQHGLK 120 + +E K+ H F+ + +G+ ++ PVF T + S LT RT + GLK Sbjct: 93 VFHNESLIKVAHNISFE-SSFLCEYGIVIKEPVFDTMLGSMLTFKSFGEFRTLRDS-GLK 150 Query: 121 DNLKELLGINISKAQQSS--------DWSADDLSDEQLQ---YAASDVVHLHALR 164 KE+ ++ S D +L E + YA +D + L Sbjct: 151 LLAKEIFNEDLP---SFSHVVNGTHFD----NLHSEHKETVRYACADSDYALRLY 198 >gi|297823419|ref|XP_002879592.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325431|gb|EFH55851.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 153 Score = 43.4 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD---IAVLFYTFGVRVR 98 +QL G II+++ ++ L L DE + + D + + + Sbjct: 12 LQLCVG-TRCLIIQLSHCKRMPDVLRSFLEDETITFVGVWNSQDKDNLERFRHQLEIW-- 68 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAAS 155 + T+ + E LG + K S+W A LS +Q+ A+ Sbjct: 69 RLLDI---RHYLATWLRNSSFEQGRSECLGHEGVRKDKEICRSNWGARSLSHDQIVQASH 125 Query: 156 DVVHLHAL--RLQFTEK 170 DV L + + ++ Sbjct: 126 DVYVFCKLGVKERLWKE 142 >gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b] gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b] Length = 1459 Score = 43.4 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 35/150 (23%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDI---IRIAAGQKNAPNLVGM 69 + D ET G P D++ +++ G+ + + I I + Sbjct: 425 YVVFDIETTGFDPFNDKI--IEIGAVKMRGREVIGEFSEFVNPEIPIPQKITELTTITDE 482 Query: 70 LVD--EKREKIF--------------HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRL 109 +V EK E + H +FD+ + G+ P V T +R Sbjct: 483 MVANAEKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYSPSVIDTLPLART 542 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139 +GL + +K GI + ++ D Sbjct: 543 LLPELRGYGLANLVK-YFGITLETHHRAVD 571 >gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185] Length = 1446 Score = 43.4 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 36/159 (22%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVDII--------RIAAGQK 61 + + D ET+GL + +++ G V+ I + Sbjct: 412 DALIEEESFVVFDLETMGLNSHEHEI--IEIGAVKLQGTRIVERYSQLVNPKKPIPKKIQ 469 Query: 62 NAPNLVGMLVD--EKREKIF--------------HYGRFDIAVLFYT----FGVRVRP-V 100 N+ +VD E++ H FD+ + G +P V Sbjct: 470 ELTNISQDMVDNMPTIEEVLPKFMEFVGDSTMVAHNAPFDMGFIRRDVKKFMGYDYKPAV 529 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 T +R +GLK+ ++LG+++ ++ D Sbjct: 530 IDTLQMARDLYPELKAYGLKNL-NKVLGLSLDNHHRAVD 567 >gi|330881726|gb|EGH15875.1| ribonuclease D [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 38 Score = 43.4 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 11/32 (34%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV 88 N L +L + K+ H D+ V Sbjct: 1 PLLINNWAPLSALLENPDVIKVVHACSEDLEV 32 >gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1] gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1] Length = 1443 Score = 43.4 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 34/158 (21%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 P + D ET GL D L V++ G I Sbjct: 418 PEHRLLADTTYVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDKYESFANPHHPLSATTI 477 Query: 55 RIAAGQKN----APNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVR--VRP 99 + + AP + + + + + H FDI L + FG+ V P Sbjct: 478 ELTGITDDMVRNAPEVEQVIKEFHAFIGDAIV-VAHNASFDIGFLYTGYKKFGLEDTVHP 536 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T +RL H L K+ I +++ ++ Sbjct: 537 VIDTLELARLLYPTMKNHRLNTLCKKF-NIELTQHHRA 573 >gi|325140605|gb|EGC63125.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385] Length = 469 Score = 43.1 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 17 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 76 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 77 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 136 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 137 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 177 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 178 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 225 >gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80] gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80] Length = 525 Score = 43.1 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 10/141 (7%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 L +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 1 LKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLAL 59 Query: 125 ELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178 L + +Q + + L+ Q+ QYAA D L + +++ + + Sbjct: 60 RFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLE 119 Query: 179 LA--TSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 120 QVYREIEMPLVPVLSRIERTG 140 >gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14] gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14] Length = 889 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 44/143 (30%), Gaps = 33/143 (23%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRT 112 + + L D R K+FH + + VL G V V T +A+ L + Sbjct: 359 DPAQLDETDETAFAAWLADADRPKVFHDAKGAMRVLAEH-GWSVDGVRMDTALAAYLVKP 417 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L E L +L+ AA+D +L Sbjct: 418 GRRSFALDALSLEYL--------------HRELAPA----AAAD------------GQL- 446 Query: 173 RLGRSDLATSCCNFLMDRAELDL 195 G + A + + R+ LDL Sbjct: 447 AFGADEAAEAEMLMIQARSILDL 469 >gi|269213464|ref|ZP_05982022.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria cinerea ATCC 14685] gi|269146173|gb|EEZ72591.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria cinerea ATCC 14685] Length = 470 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 67/233 (28%), Gaps = 67/233 (28%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---------------------QLS 45 + + R+ +AV D E+ G DR+ +V Q Sbjct: 18 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77 Query: 46 PG-----DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GV-R 96 G DG V + A L +L + I H RFD L + F G+ Sbjct: 78 SGLTGISDGMVA--DAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGF 133 Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 P C+ SR +H L ++ LGI + + A +D Sbjct: 134 SSPALCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMAD 176 Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 V AL L G C L +R L G + Sbjct: 177 VS---ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|29366786|ref|NP_813726.1| gp11 [Streptomyces phage phiBT1] gi|29243106|emb|CAD80134.1| gp11 [Streptomyces phage phiBT1] Length = 624 Score = 43.1 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 66/206 (32%), Gaps = 40/206 (19%) Query: 3 TIRV--HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA 57 TIRV + D+ AR +A+DTET GL + VQ I Sbjct: 14 TIRVPETDADLREFMHWARNKPELALDTETTGLDIYAPGYGLRTVQFGTTHEAWVIHYEL 73 Query: 58 AGQKNAPNLVGMLVDEKREK-----IFHYGRFDIAVLFYTFGVRVRPV----FCTKIASR 108 G + K + H FD VL V + + TKI + Sbjct: 74 RG-----RFKE--AADYVLKHCPRFLIHNAMFDWLVLDAHADVSLESLAPRTIDTKIKAT 126 Query: 109 LTRTYTNQ-----HGLKDNLKELLGINISKAQQ--SSDWSADDLSDE------QLQ---- 151 L Q GLK + + Q ++ + + L+ L+ Sbjct: 127 LIDPRQPQEGGIGTGLKPLSAFYVDPSAPDTQGDLTAVFRSLGLTKATGFAGIDLRHPTY 186 Query: 152 --YAASDVVHLHALRLQFTEKLQRLG 175 YA DV++ L + +RLG Sbjct: 187 NLYAGLDVIYTARLNPCLDVEHERLG 212 >gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905] gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905] Length = 1443 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 48/158 (30%), Gaps = 34/158 (21%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 P + D ET GL D L V++ G I Sbjct: 418 PEHRLLEEATYVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDKYESFANPHHPLSATTI 477 Query: 55 RIAAGQKN----APNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVR--VRP 99 + + AP + + + + + H FDI L + FG+ P Sbjct: 478 ELTGITDDMVRHAPEVEQVIKEFHAFIGDGIV-VAHNASFDIGFLYTGYKKFGLEGTTHP 536 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T +RL H L K+ I +++ ++ Sbjct: 537 VIDTLELARLLYPTMKNHRLNTLCKKF-NIELTQHHRA 573 >gi|268684113|ref|ZP_06150975.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] gi|268624397|gb|EEZ56797.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] Length = 264 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 18 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 78 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLREQLYGLPD 226 >gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] Length = 859 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 6/98 (6%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 ++L ++ D + +A + L L + + K H + L G+ Sbjct: 330 EQLTLL---DRDNVAIVQDLADVDPKDEKVLAEWLANPQATKWLHDSKQTYHTLQ-DQGL 385 Query: 96 RVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 ++ V T +A+ L R GL D ++ +G +S Sbjct: 386 KLDGVEHDTSLAAYLLRPDVRTLGLADVVQRHVGHELS 423 >gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae BRL-230010] Length = 686 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 29/145 (20%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTR 111 + P V + D + H RFD+ + P T +RL Sbjct: 484 PDIAEELPKFVEFVGDA--VLVAHNARFDMGFIQANLKNIGMPELPNPSLDTLELARLLF 541 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 H L + +++ + A D V L + ++ Sbjct: 542 PSLKNHRLNTLADKF-KVSLENHHR----------------AIDDTVALMHILNHLLQEA 584 Query: 172 QRLGRSDLATSCCNFLMDRAELDLL 196 + + L N L D DL Sbjct: 585 EEQNLTQL-----NRLNDHVGKDLR 604 >gi|15677307|ref|NP_274462.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|7226692|gb|AAF41810.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58] gi|316984587|gb|EFV63552.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Neisseria meningitidis H44/76] gi|325199934|gb|ADY95389.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76] Length = 470 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50 + + R+ +AV D E+ G DR+ +V Q Sbjct: 18 LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77 Query: 51 VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 + I+ G +AP + + K + H RFD L + F G+ P Sbjct: 78 AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G C L +R L G + Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226 >gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C427] gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C427] Length = 1438 Score = 43.1 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] Length = 944 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 26/190 (13%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------- 68 + + +DTET + P +L + LS G I +A + L Sbjct: 349 LLDASELVCIDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSRE 408 Query: 69 --------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119 L DE R K+ + ++D V G+ +R + T + S + ++ N HG+ Sbjct: 409 AVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGITHDTMLQSYVLASHRN-HGM 466 Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + +L + K + L +YAA D L K+ Sbjct: 467 DALAERVLHLKTITYEEVCGKGAAQIGFDEVALDRA-TEYAAEDADITLRLHRALYPKVA 525 Query: 173 RLGRSDLATS 182 + Sbjct: 526 EDDKLRYVYE 535 >gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 1447 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 39/157 (24%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD------I 53 + +E +P + + D ET GL DR+ +Q+S DG V I Sbjct: 412 PLVYNENHLP----LKGQPYVIFDIETTGLSAIYDRI--IQVSAVKMQDGEVLDHFDQFI 465 Query: 54 IRIAAGQKNAPNLVGMLVD--------EKREKIF-----------HYGRFDIAVL----- 89 + L + D E+ K+F H FD+ + Sbjct: 466 DPGFHLSEQTTALTSITDDMVQGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYE 525 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + G +PV T +R + L K Sbjct: 526 RHGMGQIKQPVIDTLPLARFLHPDFRGYRLNTLSKRF 562 >gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] Length = 1436 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 571 ATAYIFIKMVQQMKELG 587 >gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956] gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus fermentum IFO 3956] Length = 1447 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 39/157 (24%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD------I 53 + +E +P + + D ET GL DR+ +Q+S DG V I Sbjct: 412 PLVYNENHLP----LKGQPYVIFDIETTGLSAIYDRI--IQVSAVKMQDGEVLDHFDQFI 465 Query: 54 IRIAAGQKNAPNLVGMLVD--------EKREKIF-----------HYGRFDIAVL----- 89 + L + D E+ K+F H FD+ + Sbjct: 466 DPGFHLSEQTTALTSITDDMVQGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYE 525 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + G +PV T +R + L K Sbjct: 526 RHGMGQIKQPVIDTLPLARFLHPDFRGYRLNTLSKRF 562 >gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group] Length = 1033 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 50/181 (27%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G+ D +K++H FD V+ G++V Sbjct: 321 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDSHVIEN-CGIKVAGFHAD 379 Query: 103 TKIASRL---TRTYTNQHGLKDN-----LKELLGINISKA-------------------- 134 T +RL +R + L+ + + + +I K Sbjct: 380 TMHLARLWDSSRRTDGGYSLEGLTNDHRVMDAVVKDIPKTGKVSMKTIFGRKKVRKDGSE 439 Query: 135 -----------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 Q D +L + Y++ D + L KL+ + Sbjct: 440 GKTISIEPVEKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAK---EWIFDD 490 Query: 184 C 184 C Sbjct: 491 C 491 >gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus fermentum 28-3-CHN] gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus fermentum 28-3-CHN] Length = 1447 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 39/157 (24%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD------I 53 + +E +P + + D ET GL DR+ +Q+S DG V I Sbjct: 412 PLVYNENHLP----LKGQPYVIFDIETTGLSAIYDRI--IQVSAVKMQDGEVLDHFDQFI 465 Query: 54 IRIAAGQKNAPNLVGMLVD--------EKREKIF-----------HYGRFDIAVL----- 89 + L + D E+ K+F H FD+ + Sbjct: 466 DPGFHLSEQTTALTSITDDMVQGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYE 525 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + G +PV T +R + L K Sbjct: 526 RHGMGQIKQPVIDTLPLARFLHPDFRGYRLNTLSKRF 562 >gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MRSA252] gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C160] gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus Btn1260] gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus A017934/97] gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8] gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus MRSA252] gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus Btn1260] gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C160] gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus A017934/97] gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8] gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00] Length = 1438 Score = 43.1 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 952 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102 S DG V +I ++ G+ ++ L D+ EK F+ L G R++P +C Sbjct: 38 SIDDGGVKVIDLSNGEIIPEEILSALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYC 97 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 T I S L+ + E+L + K Sbjct: 98 TMIWSAYLGLPL---SLEK-VGEVL--KLDKQ 123 >gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 908 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 1/91 (1%) Query: 42 VQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 V L+ G A + + L D R K+FH + + V Sbjct: 365 VALATSAGPAAWFDPAELDEADERAFAAWLADAGRPKVFHDAKSAMRVFAEHGWSIEGVT 424 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +A+ L + L E L + Sbjct: 425 MDTALAAYLVKPGRRSFDLDALSLEYLHREL 455 >gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551] gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551] Length = 946 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 26/190 (13%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------- 68 + + +DTET + P +L + LS G I +A + L Sbjct: 351 LLDASELVCIDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSRE 410 Query: 69 --------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119 L DE R K+ + ++D V G+ +R + T + S + ++ N HG+ Sbjct: 411 AVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGITHDTMLQSYVLASHRN-HGM 468 Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + +L + K + L +YAA D L K+ Sbjct: 469 DALAERVLHLKTITYEEVCGKGAAQIGFDEVALDRA-TEYAAEDADITLRLHRALYPKVA 527 Query: 173 RLGRSDLATS 182 + Sbjct: 528 EDDKLRYVYE 537 >gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46] Length = 1436 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ +++Q LG Sbjct: 571 ATAYIFIKMVQQMQELG 587 >gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414] gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414] Length = 970 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 59/170 (34%), Gaps = 25/170 (14%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLS------PGDGTVDIIRIAAGQKNAPN-----LVGML 70 +A DTET L PR +V + P + I G+ + + L +L Sbjct: 380 PVAWDTETSDLEPRDA--TLVGIGCCWGTQPDESAYIPIAHKFGENLSQDVVFAELSPIL 437 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 K F G+FD V VF T +AS + T H L D LG+ Sbjct: 438 TSADYPKTFQNGKFDRLVFRCQGIKLAGIVFDTMLASYVLNPDTP-HNLNDISLRYLGLI 496 Query: 131 I-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + K Q +D S + Y V L + E+L++ Sbjct: 497 LKSYEDLVPKGQTIADISIASVG----YYCCLQVHATFQLVQKLREELEK 542 >gi|240125521|ref|ZP_04738407.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679] Length = 255 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 9 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 69 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLREQLYGLPD 217 >gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group] Length = 885 Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 35/168 (20%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G+ D K++H FD V+ G++V Sbjct: 175 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENY-GIKVAGFHAD 233 Query: 103 TKIASRL---TRTYTNQHGLKDNL--KELLGI---NISKAQQSS-----DW--------- 140 T +RL +R + L+ ++G+ + K + S W Sbjct: 234 TMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSA 293 Query: 141 -----------SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 D + + Y++ D + L KL++ + Sbjct: 294 GKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYESLKSKLEKKHWT 341 >gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11] Length = 1436 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 571 ATAYIFIKMVQQMKELG 587 >gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 55/2053] gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 65-1322] gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus 68-397] gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus E1410] gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M876] gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WBG10049] gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M899] gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C101] gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M809] gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M1015] gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 55/2053] gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 65-1322] gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus 68-397] gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus E1410] gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M876] gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus C101] gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M899] gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus WBG10049] gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus aureus subsp. aureus M1015] gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus M809] gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60] Length = 1438 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780] gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780] Length = 1463 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNIIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLKQVLQEFQEFCQDTVLVAHNATFDVGFMNANYERHGLPKITQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 565 >gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA131] Length = 1436 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 571 ATAYIFIKMVQQMKELG 587 >gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98] gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819] gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796] gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98] gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819] gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796] Length = 1436 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 571 ATAYIFIKMVQQMKELG 587 >gi|194747874|ref|XP_001956374.1| GF24627 [Drosophila ananassae] gi|190623656|gb|EDV39180.1| GF24627 [Drosophila ananassae] Length = 293 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 13/143 (9%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 + +V ++ + T A G P +L ++ K+ HY + G+R+ Sbjct: 82 KTSVVVVATANETYVFDVQALGGTIHPEFRFILEAKRPRKVVHYSHRIGDHFNHRHGIRL 141 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK---------AQQSSDWSADDLSDE 148 + + A L R L + + + G+ + K + ++ A L+ Sbjct: 142 GGICDSFTALCLARRERTPRTLPEAVSLVFGLPLEKLLCKEVSGSRESLRNFIARPLTHS 201 Query: 149 QLQYAASDVVHLHALRLQFTEKL 171 QL+Y A L L+L+ ++L Sbjct: 202 QLRYLAR----LAILQLKMHDRL 220 >gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus TW20] Length = 1438 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] Length = 944 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 26/190 (13%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------- 68 + + +DTET + P +L + LS G I +A + L Sbjct: 349 LLDASELVCIDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSRE 408 Query: 69 --------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119 L DE R K+ + ++D V G+ +R + T + S + ++ N HG+ Sbjct: 409 AVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGITHDTMLQSYVLASHRN-HGM 466 Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + +L + K + L +YAA D L K+ Sbjct: 467 DALAERVLHLKTITYEEVCGKGAAQIGFDEVALDRA-TEYAAEDADITLRLHRALYPKVA 525 Query: 173 RLGRSDLATS 182 + Sbjct: 526 EDDKLRYVYE 535 >gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50] gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315] gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9] gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1] gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3] gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781] gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus A9719] gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A9299] gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A8115] gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6300] gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6224] gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5937] gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A8117] gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A10102] gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1] gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus subsp. aureus N315] gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu50] gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus aureus subsp. aureus JH9] gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus JH1] gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus Mu3] gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781] gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763] gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus A9719] gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A9299] gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A8115] gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6300] gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A6224] gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5937] gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A10102] gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A8117] gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981] gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03] gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21172] Length = 1438 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21193] Length = 1438 Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|321452322|gb|EFX63735.1| hypothetical protein DAPPUDRAFT_118908 [Daphnia pulex] Length = 341 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 52/172 (30%), Gaps = 50/172 (29%) Query: 22 AIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLV-------G 68 + VD E + ++Q++ D + + + + +++ Sbjct: 164 VVGVDIE-------WPPFGTLAKATVLQIATHDKIFLLDIFSLREDKSCSVINSQQLIGD 216 Query: 69 MLVDEKREKIFHYGRFDIAVLFYTF------------GVRVRPVF---CTKIASRLTRTY 113 + + K+ + + D+ VL + + ++ ++ TK S L Sbjct: 217 LFGNRHILKLGYGLKEDLHVLSRSLPGIGDVSKSIVNWIDIKNLWSNIETKYPSFLPPAV 276 Query: 114 TNQHGLKDNLKELLGINI------------SKAQQSSDWSADDLSDEQLQYA 153 N D + + K +Q SDW L Q YA Sbjct: 277 LND---GDTCSQETHKGLSGLVKLLLGLPLDKKEQFSDWQKRPLRTSQFIYA 325 >gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus ST398] Length = 1438 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130] gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130] Length = 1438 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 1442 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 416 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 474 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 475 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 577 ATAYIFIKMVQQMKELG 593 >gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2] gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MSSA476] gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. Newman] gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5948] gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30] gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus 930918-3] gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9765] gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132] gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70] gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus MW2] gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus MSSA476] gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus subsp. aureus str. Newman] gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus A5948] gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus 930918-3] gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30] gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9765] gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70] gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01] gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131] gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus 21189] Length = 1438 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL] gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754] gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus] gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus COL] gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754] Length = 1436 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 571 ATAYIFIKMVQQMKELG 587 >gi|327356611|gb|EGE85468.1| 3'-5' exonuclease [Ajellomyces dermatitidis ATCC 18188] Length = 270 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 34/193 (17%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRI--------AAGQKNAPNLVGMLV 71 ++ +D E + L R + I+Q+ V ++ I N +L +L Sbjct: 28 PSLYIDLEGINL-CREGSISILQIFNHPKEHVYLVDIHHLGEAAFTTTGTNGKSLKSILE 86 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-----HGLKD----- 121 K+F R D LF+ FG+R++ + ++ +R GL Sbjct: 87 CPVTPKVFFDVRNDSNALFFHFGIRLQGIEDIQLMENGSRPGPLSRKKFVSGLARCIEMD 146 Query: 122 -----NLKELLGINISKAQQ---------SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 K L N K Q ++ + + Y DV + LR + Sbjct: 147 TPVSPAAKRLWKENKDKGTQLFAPERGGSHEVFNVRPIPQAIIDYCVQDVSFMPLLRTLY 206 Query: 168 TEKLQRLGRSDLA 180 KL +S++ Sbjct: 207 WSKLTPHWKSEVV 219 >gi|261196313|ref|XP_002624560.1| 3'-5' exonuclease [Ajellomyces dermatitidis SLH14081] gi|239587693|gb|EEQ70336.1| 3'-5' exonuclease [Ajellomyces dermatitidis SLH14081] gi|239614653|gb|EEQ91640.1| 3'-5' exonuclease [Ajellomyces dermatitidis ER-3] Length = 305 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 34/193 (17%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRI--------AAGQKNAPNLVGMLV 71 ++ +D E + L R + I+Q+ V ++ I N +L +L Sbjct: 28 PSLYIDLEGINL-CREGSISILQIFNHPKEHVYLVDIHHLGEAAFTTTGTNGKSLKSILE 86 Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-----HGLKD----- 121 K+F R D LF+ FG+R++ + ++ +R GL Sbjct: 87 CPVTPKVFFDVRNDSNALFFHFGIRLQGIEDIQLMENGSRPGPLSRKKFVSGLARCIEMD 146 Query: 122 -----NLKELLGINISKAQQ---------SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 K L N K Q ++ + + Y DV + LR + Sbjct: 147 TPVSPAAKRLWKENKDKGTQLFAPERGGSHEVFNVRPIPQAIIDYCVQDVSFMPLLRTLY 206 Query: 168 TEKLQRLGRSDLA 180 KL +S++ Sbjct: 207 WSKLTPHWKSEVV 219 >gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus ED133] Length = 1436 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 571 ATAYIFIKMVQQMKELG 587 >gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9635] gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus A9635] Length = 1438 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] Length = 908 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 21/108 (19%) Query: 42 VQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRF----------DIAVLF 90 V ++ G G + A + L L D +R K H + D+ Sbjct: 356 VAVADGAGQAVAYDLTAIDPADETALAAWLADPQRPKALHAAKEASHALAGRGLDLE--- 412 Query: 91 YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 GV F T++A+ L + + L D L + SS Sbjct: 413 ---GVT----FDTELAAYLCQPDRRAYDLPDLAIGYLRRELGGDDGSS 453 >gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus aureus subsp. aureus JKD6159] Length = 1438 Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus D139] gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus H19] gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp. aureus D139] gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus H19] Length = 1438 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus] Length = 1435 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 571 ATAYIFIKMVQQMKELG 587 >gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516] gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516] Length = 933 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 17/133 (12%) Query: 55 RIAAGQKN----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110 +A GQ + L ML D+ K+ + + +L G+ + PV T + S Sbjct: 396 DLAEGQMDFDAALALLRPMLEDDSIMKVAQDAKAAMKLLGRH-GIALAPVDDTHLLSYAL 454 Query: 111 RTYTNQHGLKDNLKELLG---INIS------KAQQSSDWSADDLSDEQLQYAASDVVHLH 161 + + H L LLG I + K+ ++ D + YAA + + Sbjct: 455 NSGLHGHTLDTLSDRLLGHRPIELKSVVGTGKSARTFD---RVPVEAVTPYAAEEADIVL 511 Query: 162 ALRLQFTEKLQRL 174 L ++L R Sbjct: 512 RLWQALKQQLFRK 524 >gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum] Length = 1855 Score = 42.7 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 47/167 (28%) Query: 47 GDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT------FGVRVR 98 G G+ + I G + DE K++H FD V + FG Sbjct: 1177 GTGSRIWVDILGSNGDEILQIFKEYFEDESIFKVWHNYAFDRHVFYNHNIDVVGFG---- 1232 Query: 99 PVFCTKIASRL---TRTYTNQHGLKDNLKELLGINISKAQQSSD--WSADDL-SD----- 147 T + +RL +R + L+ K+L + K + + D + L SD Sbjct: 1233 --GDTMLMARLWDASRMMRGGYSLEGLTKDL----LDKHKTNMDDLFGQPKLKSDGTPGK 1286 Query: 148 ------------------EQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + ++Y++ D LR +KL + Sbjct: 1287 GIILPPLEHLQRSSKHLTKWIEYSSRDAEVTWMLRENLHKKLMTMEW 1333 >gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358] Length = 653 Score = 42.7 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 8/99 (8%) Query: 42 VQLSP---GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG---V 95 +QL GD V + + G ++ L D KR K+ H +F+ + Y + Sbjct: 33 IQLFSYRFGDEPVTRLDLQQGDVIPSKVLRALRDPKRIKVAHNAQFERVCIGYELDGRPL 92 Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 CT + + G+ L L + K Sbjct: 93 DPTNWRCTMVWGSCLGLPQSLDGMGKALG--LDVQKDKE 129 >gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] Length = 896 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 25/191 (13%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM-LVDEKREKIF----- 79 DTET L R+ ++ S I IA + V + E E+IF Sbjct: 336 DTETTSLDVRKAKIVGFSFSVNGVDCYYIPIAHNYLGVESQVSLECARECIEQIFQSQYV 395 Query: 80 --HYGRFDIAVLFYTFGVR---VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--- 131 H ++D+ +L F V + + + L ++ T L +K+ + Sbjct: 396 IGHNLKYDLEILKTNFDFVLEDFSKVRDSMLLAWLLQSDT-LCNLDFLMKKYFNHEMIHY 454 Query: 132 ----SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186 K + S+ L +YA+ D + L + L ++A F Sbjct: 455 KDIVGKNENFSN----ILIQHACEYASEDAAACYQLYFKLRG-LMDESLLEIAQKVEFPF 509 Query: 187 LMDRAELDLLG 197 + ++L G Sbjct: 510 IQSLMNMELSG 520 >gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus] Length = 1415 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 571 ATAYIFIKMVQQMKELG 587 >gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52] gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52] Length = 481 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 12/122 (9%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A DTET L L + + +G + +A +AP L Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 410 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L DE + K+ ++D +V+ GV +R + T + S + + +H + Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469 Query: 126 LL 127 L Sbjct: 470 FL 471 >gi|308484057|ref|XP_003104229.1| hypothetical protein CRE_24937 [Caenorhabditis remanei] gi|308258198|gb|EFP02151.1| hypothetical protein CRE_24937 [Caenorhabditis remanei] Length = 228 Score = 42.7 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 Q L+D + G ISK++ S+W+A L ++Q++YA D + LH + Sbjct: 127 PQMSLQDTAARI-GAPISKSKTMSNWTAWRLREDQIRYAMMDAIVLHYI 174 >gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] Length = 684 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 57/173 (32%), Gaps = 41/173 (23%) Query: 15 CAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGD------GTVDI---IRI------ 56 A V+ + VDTET GL P DR + V++ G+ V I Sbjct: 94 LALEEVEFVVVDTETTGLRPGPDRVIEVAGVRMRNGEILDTFQSLVHPERRIPPFIVRFT 153 Query: 57 ---AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGV--RVRPV--FCTK 104 +AP ++ D E + H FD+ L + + PV T Sbjct: 154 GISPEMLADAPKARDIMPDFLRFIEGATLVGHNLSFDVNFLTHEAQLLGLPFPVEGLDTI 213 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 + SR + L D + + L I L D Q+ +DV Sbjct: 214 LLSRRLLPGLKRFKL-DMVAQYLQIQTHNRH-------RALGDAQVT---ADV 255 >gi|157265423|ref|YP_001467981.1| DNA polymerase I [Thermus phage P74-26] gi|156905318|gb|ABU96961.1| DNA polymerase I [Thermus phage P74-26] Length = 728 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 51/151 (33%), Gaps = 24/151 (15%) Query: 1 MTTIRVHEGDI--PAECAARYVDAIAVDTETLGLMPRRDRLCI-------VQLSPGDGTV 51 M + V D A A +A+DTET G P L + V ++ Sbjct: 1 MRSYHVVTNDTFPLALDAIAQAPRVALDTETYGSNPFN--LYLPDFRLVGVAIATSPTEA 58 Query: 52 DIIRIAAGQKNAP----NL------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 + NL +L KR ++H +D VL T + + + Sbjct: 59 WYFPVDHQDFLLRYQPANLPREAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTY 118 Query: 102 --CTKIASRLTRTYTNQHGLKDNLKELLGIN 130 T +A L GLK+ K LLG+ Sbjct: 119 GDDTMVALHLVDENHP-LGLKEWAKTLLGLE 148 >gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM 13941] gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM 13941] Length = 944 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 41/127 (32%), Gaps = 27/127 (21%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 AP L + + H RFDI +L +P F T + L T + L Sbjct: 74 APRFAAFLKNYPL--VGHNVRFDINMLQAQGMRLPQPAFDTFELATLLMPRTPAYRLSAL 131 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV---HLHALRLQ-------FTEKLQ 172 + LGI +A LSD DV LH LR E ++ Sbjct: 132 AET-LGIVHDEAH-------RALSDA-------DVTRQVFLHLLRRIDALSLNDLNEIVR 176 Query: 173 RLGRSDL 179 R D Sbjct: 177 LTSRVDW 183 >gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] Length = 944 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 26/190 (13%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL--------- 66 V+ + +DTET + P +L + LS G I +A + L Sbjct: 349 LLDTVELVCIDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDNAAQLSRE 408 Query: 67 ------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119 L DE R+K+ + ++D V G+ +R + T + S + ++ N HG+ Sbjct: 409 AVLARMKLWLEDETRKKVGQHLKYDAHVFANH-GIALRGIAHDTMLQSYVLASHRN-HGM 466 Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + +L + K + L +YAA D L K+ Sbjct: 467 DALAERVLHLKTITYEEVCGKGAAQIGFDEVALDRA-TEYAAEDADITLRLHRALYPKVT 525 Query: 173 RLGRSDLATS 182 + Sbjct: 526 EDDKLRYVYE 535 >gi|268601098|ref|ZP_06135265.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18] gi|268585229|gb|EEZ49905.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18] Length = 264 Score = 42.7 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIR-------- 55 + + R+ +AV D E+ G DR+ +V Q + Sbjct: 18 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPQFV 77 Query: 56 -----IAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 I+ G +AP + K + H RFD L + F G+ P Sbjct: 78 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLREQLYGLPD 226 >gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330] Length = 925 Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 64/196 (32%), Gaps = 35/196 (17%) Query: 6 VHEGDIPAECAARYV------DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59 V + A+ AR I +DTET P + +L + ++ G I +A Sbjct: 327 VTTAEQLADLVARLHVCMQNGSPIGLDTETTSREPMQAQLVGISVALAAGEAFYIPVAHR 386 Query: 60 QKNA--------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLT 110 +A +L L E KI ++D + + ++ + +AS + Sbjct: 387 FADAQLDWATVKSSLQPFLESESLGKIGQNLKYDQHIFKNQ-DIDLKGIVGDAMLASYIV 445 Query: 111 RTYTNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQ--LQYAASDVV 158 ++ H L D LG+ +K +D D Q QYA D Sbjct: 446 ESHLT-HNLDDLAARWLGLETISYESLCGKGAKEISFAD------VDVQAATQYACQDAD 498 Query: 159 HLHALRLQFTEKLQRL 174 + ++ Sbjct: 499 FALRIEQHLRTQMDAA 514 >gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712] Length = 916 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 44/150 (29%), Gaps = 23/150 (15%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 A + + + D R K+ H + + V T +A+ L + Sbjct: 387 PSALDEADERAWAAWIADPDRPKVLHNAKGAMRVFPEHGWSIAGVTMDTALAAYLVKPGR 446 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV----------VHLHALR 164 L E L ++ A + D QL + A D + L Sbjct: 447 RSFALDALSVEYLHRELAPAAAA---------DGQLAFGADDTAEAEALMTQARAVLDLG 497 Query: 165 LQFTEKLQRLG-RSDLATSCCNFLMDRAEL 193 F EKL +G R L L A L Sbjct: 498 DAFAEKLDEVGARELLHQVE---LPTSALL 524 >gi|330934256|ref|XP_003304476.1| hypothetical protein PTT_17080 [Pyrenophora teres f. teres 0-1] gi|311318879|gb|EFQ87427.1| hypothetical protein PTT_17080 [Pyrenophora teres f. teres 0-1] Length = 741 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 46/177 (25%) Query: 13 AECAARYV---DAIAVDTETL-GLMPRRDR--LCIVQLSPGDGTVD----IIRIAAGQKN 62 AE A+Y + D E P + +VQL+ + + +K Sbjct: 197 AERVAQYFLREKVVGFDIEWKPRGNPHSIKQNASLVQLACENRIALFHLALFPGRKVEKL 256 Query: 63 APN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--------------C-TKIA 106 P L +L K+ + D L G++ + VF +KI+ Sbjct: 257 MPPSLRAVLESLDIYKVGVAIKGDFTRLEKYLGIQPQGVFELSRLHNLVEWHDVDPSKIS 316 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS------------SDWSADDLSDEQLQ 151 +L GL + + L + + K +Q SDWS LS EQ+ Sbjct: 317 KKL-------VGLAAQVHQHLQLPLYKGEQLDDDPEETASVRESDWSL-PLSLEQIH 365 >gi|254493534|ref|ZP_05106705.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291] gi|268681897|ref|ZP_06148759.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|226512574|gb|EEH61919.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291] gi|268622181|gb|EEZ54581.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|317164039|gb|ADV07580.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae TCDC-NG08107] Length = 264 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 18 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 78 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLRERLYGLPD 226 >gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens] Length = 792 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 2/67 (2%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G D +K++H FD +L G+ + + Sbjct: 60 FGNGKNRLWVDVLDGGDGILEVFRRYFEDPSIKKVWHNYSFDKHILSRH-GIHPQGFYAD 118 Query: 103 TKIASRL 109 T +RL Sbjct: 119 TMHLARL 125 >gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16] gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16] Length = 528 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 63/203 (31%), Gaps = 52/203 (25%) Query: 21 DAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD----- 72 + VD ET G +RDR+ +V++ P DG ++ + + P + + Sbjct: 29 PIVFVDLETTGADAQRDRITEIGVVEVGP-DGIIEWDTLLDPGMSIPPFIQRMTGITEEM 87 Query: 73 ------------------EKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLT 110 + R + H RFD L F GV R V CT SR Sbjct: 88 VRGQPSFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFRADVLCTVRLSRSL 147 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +HGL + L+ + A +D L + Sbjct: 148 FPSVERHGLDALIARFG-----------------LTPKGRHRALADAELLWQFWQKIHAT 190 Query: 171 LQRLGRSDLATSCCNFLMDRAEL 193 DL S L+ RA L Sbjct: 191 YS----VDLVESAVRTLVRRASL 209 >gi|91224626|ref|ZP_01259887.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|91190514|gb|EAS76782.1| DNA polymerase I [Vibrio alginolyticus 12G01] Length = 680 Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 34/168 (20%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA--SRLTRTYTN------ 115 P L+ L+D I H+ + ++ L+ R ++ T IA +R + Sbjct: 119 PKLLQPLLDLPTTYIAHHAKAELHCLWQLGLTEPRTIWDTCIAERARYLGLHVFDNDRVF 178 Query: 116 -------------------QHGLKDNLKEL---LGINISK---AQQSSDWSADDLSDEQL 150 ++ L N+ K D+ + + + EQ+ Sbjct: 179 DSENAEICARAEHAENNRIRYALNTVASRYDIHHRFNLVKSDLQHSFIDYDSGEFTREQI 238 Query: 151 QYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFLMDRAELDLLG 197 YAA D + L L ++L G L T ++ A ++ G Sbjct: 239 HYAAEDAIVAAKLYLPQMQQLTLQGCYHHLITVEMPWVTTNAAMEWHG 286 >gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] Length = 871 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 31/145 (21%) Query: 47 GDGTVDIIRIAAG-----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100 +G +I +K L + D+ +K+ H + + + + ++ Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKN-LITFLNKYDIDIQGFD 404 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD---- 156 F T IA+ L + + + D + L +I SD D Sbjct: 405 FDTAIAAYLIDSSKANYEVFDLINRFLEKDI-----KSD--------------CDDLKAI 445 Query: 157 -VVHLHALRLQFTEKLQRLGRSDLA 180 +L L + E+L + +L Sbjct: 446 CSSYLTKLYEKLKERLHKEDMDELY 470 >gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110] gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110] Length = 583 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHG 118 QK +L +L + K+F +FD + + G+ + VF T +AS + H Sbjct: 41 QKVLDSLRTILESKNYPKVFQNTKFDRLIFKHQ-GINLDGVVFDTMLASYVLHPE-KSHK 98 Query: 119 LKDNLKELL 127 L + ++ L Sbjct: 99 LSELCEQYL 107 >gi|308490719|ref|XP_003107551.1| hypothetical protein CRE_13400 [Caenorhabditis remanei] gi|308250420|gb|EFO94372.1| hypothetical protein CRE_13400 [Caenorhabditis remanei] Length = 168 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 30/45 (66%) Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 LKD++K + +++ K + SDW+A L D+Q+ YAA D V L+ L Sbjct: 58 LKDHVKIVTEMDLLKNETMSDWNAPRLRDDQVWYAAMDAVCLYYL 102 >gi|240115419|ref|ZP_04729481.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID18] Length = 255 Score = 42.7 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIR-------- 55 + + R+ +AV D E+ G DR+ +V Q + Sbjct: 9 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPQFV 68 Query: 56 -----IAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 I+ G +AP + K + H RFD L + F G+ P Sbjct: 69 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLREQLYGLPD 217 >gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999] Length = 931 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 18/147 (12%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFY 91 + L G I + +AP L +L + K +K+ H +FD VL Sbjct: 373 ISLCVAAGDACYIPLLHDYPDAPEQLNSQWALEQLTPLLKNSKNQKVGHNLKFDKNVLAN 432 Query: 92 TFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL 150 G+ + V + T + S + + +H ++ LG + + + A L+ Q+ Sbjct: 433 H-GITLNGVAYDTMLESYVLNSVVTKHHIEALSLHYLGHSPITLESIAGKGAKQLTFNQI 491 Query: 151 Q------YAASDVVHLHALRLQFTEKL 171 +AA + + L +L Sbjct: 492 GLAEAAPFAAENADIILRLHQLLWPQL 518 >gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] Length = 1032 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 21/132 (15%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ------------------- 60 A AVD + P + LC + LS G I + Q Sbjct: 440 AGAFAVDAIATSIDPMQAELCGIALSLGPNDACYIPLGHRQTGDGSGLFAAGLAPDQLGA 499 Query: 61 -KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 L +L KI +F AVL GV +R + ++ S + HGL Sbjct: 500 RDVLDALRPLLDSAGLAKIGFNIKF-TAVLLAQHGVTLRNIDDVQLISYVLDAGRGSHGL 558 Query: 120 KDNLKELLGINI 131 + LG + Sbjct: 559 DALSESNLGHTL 570 >gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4] gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4] Length = 901 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 24/191 (12%) Query: 7 HEGDIPAECAARYVDAI------AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 +E + E R+V + A D ET L + + + + +A Sbjct: 303 YETVLSEESFERWVKRLETAELFAFDLETNSLDYIEAEIVGLSFAIKPKEAAYVPLAHDY 362 Query: 61 KNAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 AP L +L D R K+ +FD VL G+ + + + + S + Sbjct: 363 DAAPLQLAREGVLARLQPLLQDSNRGKVGQNLKFDRNVLANY-GIELEGIRHDSMLESYV 421 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHAL 163 + ++H + + L + ++ + A L Q+ +YAA D L Sbjct: 422 LHSTASRHNMDSLALKYLQRSTISYEEVAGKGAKQLPFNQVPIDKATRYAAEDADICLQL 481 Query: 164 RLQFTEKLQRL 174 F +LQ+ Sbjct: 482 HHYFWPRLQQE 492 >gi|239998744|ref|ZP_04718668.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae 35/02] gi|240014337|ref|ZP_04721250.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI18] gi|240080968|ref|ZP_04725511.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA19] gi|240121900|ref|ZP_04734862.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID24-1] gi|240123269|ref|ZP_04736225.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID332] gi|268594593|ref|ZP_06128760.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268597081|ref|ZP_06131248.1| DNA polymerase III [Neisseria gonorrhoeae FA19] gi|268547982|gb|EEZ43400.1| DNA polymerase III [Neisseria gonorrhoeae 35/02] gi|268550869|gb|EEZ45888.1| DNA polymerase III [Neisseria gonorrhoeae FA19] Length = 255 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 9 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 69 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLRERLYGLPD 217 >gi|194098334|ref|YP_002001392.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae NCCP11945] gi|268598740|ref|ZP_06132907.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11] gi|193933624|gb|ACF29448.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae NCCP11945] gi|268582871|gb|EEZ47547.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11] Length = 264 Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 18 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 78 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 226 >gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum sp. B510] gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum sp. B510] Length = 702 Score = 42.3 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 58/202 (28%), Gaps = 70/202 (34%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI--IRIAAGQKNAPNLVGMLVDEK 74 + + DTET GL P S GD V I +RI G+ MLVD K Sbjct: 504 LDRLHYVVFDTETTGLSP----------SAGDEIVQIAAVRIVGGRILTGETFNMLVDPK 553 Query: 75 R-------------------------------------EKIFHYGRFDIAVLF---YTFG 94 R + H FD+ L G Sbjct: 554 RPIPPESIPFHGITDAMVAGKPTIDTVLPQFRSFVSGAVLVAHNAAFDLKFLKMKERAAG 613 Query: 95 VRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153 V PV T + SR+ H L + LGI + A Sbjct: 614 VTFDCPVLDTMLLSRMLLGNDGDHTLDGIAQR-LGIAVVDRHT----------------A 656 Query: 154 ASDVVHLHALRLQFTEKLQRLG 175 D + A+ L+ E L+ G Sbjct: 657 LGDSLVTAAVFLRMIEMLRDQG 678 >gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437] Length = 1099 Score = 42.3 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 11/86 (12%) Query: 62 NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF---GVRV--RPVFCTKIASRLTR 111 +AP L +L E + H RFD+ L G + PV T R Sbjct: 477 DAPELSEVLPRYLEFIEGTVLVAHNARFDMGFLQAACKKTGCQPVDHPVLDTLELGRFLY 536 Query: 112 TYTNQHGLKDNLKELLGINISKAQQS 137 H L K+ I +++ ++ Sbjct: 537 PRLKNHRLNTLCKQF-DIELTQHHRA 561 >gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 882 Score = 42.3 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 17/126 (13%) Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116 K L + D +K H G+ I +L G+ +R + F T IA+ L ++ Sbjct: 371 PPDKILEILKTICEDGNIKKYCHNGKETIRLLHRN-GITLRQLAFDTMIAAYLLNPASSN 429 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 L+D E L + L Q + L KL+ G+ Sbjct: 430 QDLEDISLEHLNAVLPGED-------RKL-PAQ-------AHCIMELAQLLDNKLKLYGQ 474 Query: 177 SDLATS 182 L Sbjct: 475 DRLFYE 480 >gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4] gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4] Length = 956 Score = 42.3 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 56/187 (29%), Gaps = 33/187 (17%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------QKN 62 +DTET + R+ L + + I + Sbjct: 355 LLASAPHFVIDTETTSVYWRQAELVGLSFAVQAHEAYYIPLTHSLEGDELTEKQLDRDTV 414 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVR------VRPV-FCTKIASRLTRTYT 114 L +L + KI + ++D +L Y + T +AS + Sbjct: 415 LVRLKSILENSSIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAAV 474 Query: 115 NQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRL 165 +HG+ D + L D A +S +Q+ YA D + L Sbjct: 475 TRHGMDDLARHYLQTQ---TISFEDVAGKGAKQVSFDQVAIDIASDYACEDADITYQLFE 531 Query: 166 QFTEKLQ 172 F++KL Sbjct: 532 LFSQKLA 538 >gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1] gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1] Length = 1442 Score = 42.3 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 416 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHDGE-IIDKFERFSNPHERLSETI 474 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 475 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 577 ATAYIFIKMVQQMKELG 593 >gi|153799363|gb|ABS50441.1| DNA polymerase I [Enterococcus phage F4] Length = 299 Score = 42.3 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 2/89 (2%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCT 103 DG+ + IA + + + +K ++H FD+ + + G+ PV T Sbjct: 64 REEDGSPSHLNIANVKWAEEGIKRVFESDKAT-VWHNATFDMGLAKASLGIAPRTPVHDT 122 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINIS 132 I L + LK L I Sbjct: 123 LILMHLLDEDLPSYQLKVLATRFLNIPSD 151 >gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] Length = 910 Score = 42.3 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 3/94 (3%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105 DG A + L D+ R K H + + L G V + T++ Sbjct: 374 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAGLTCDTEL 432 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 AS L H D ++ L + + + + +SD Sbjct: 433 ASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSD 466 >gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2] Length = 892 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K H + + L T++A Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 415 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + + + +SD Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSD 448 >gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1] gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2] gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1] gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1] Length = 892 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K H + + L T++A Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 415 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + + + +SD Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSD 448 >gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular protein) [Cupriavidus taiwanensis LMG 19424] Length = 532 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 68/213 (31%), Gaps = 50/213 (23%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSP-----GDGTVDI-------- 53 D + AA + VD ET G +RDR+ +V++ P + +D Sbjct: 21 DAQSLAAALSRPIVFVDLETTGADAQRDRITEIGVVEVGPDGIVEWETLLDPGMSIPPFI 80 Query: 54 -------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVLFYTF---GVRVRP-V 100 + GQ +L L + + R + H RFD L F GV R V Sbjct: 81 QRMTGISDDMVRGQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFRADV 140 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 CT SR +HGL + L+ + A +D L Sbjct: 141 LCTVRLSRSLFPSVERHGLDALIARFG-----------------LTPKGRHRALADAELL 183 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193 + +L + L+ RA L Sbjct: 184 WQFWQKIHATYS----VELVEAAVRTLVRRASL 212 >gi|167945573|ref|ZP_02532647.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 161 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 72 DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 D +++K+ ++D++VL G+ +R + F T + S + + ++H + K+ L + Sbjct: 1 DPEQKKVGQNLKYDMSVLARY-GIELRGIAFDTMLESYVLDSTASRHDMDSLAKKYLHYD 59 Query: 131 ISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174 + + L+ +Q+ YAA D L +LQ Sbjct: 60 TIHFEDVAGKGKKQLTFDQIPLESAAPYAAEDADITLRLHQTLWPRLQAE 109 >gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3] gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4] Length = 892 Score = 42.3 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 1/93 (1%) Query: 48 DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 DG A + L D+ R K H + + L T++A Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 415 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 S L H D ++ L + + + + +SD Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSD 448 >gi|308481970|ref|XP_003103189.1| hypothetical protein CRE_26689 [Caenorhabditis remanei] gi|308260294|gb|EFP04247.1| hypothetical protein CRE_26689 [Caenorhabditis remanei] Length = 89 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Query: 115 NQHGLKDN--LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 +H L + + + ISK + S+W L D+++QYAA D V LH + Sbjct: 34 QRHPLLSLQAAADRIRVPISKTETMSNWCGPQLRDDKIQYAAMDAVVLHNI 84 >gi|240016771|ref|ZP_04723311.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA6140] gi|240112673|ref|ZP_04727163.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae MS11] Length = 255 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 9 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 69 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 217 >gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus TM300] gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 1437 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 54/198 (27%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------- 52 P + + + D ET GL + D+ L V++ G+ +D Sbjct: 412 PTDRILKDATYVVFDVETTGLSNQYDKIIELAAVKVHDGE-IIDKFERFSNPHERLSDTI 470 Query: 53 ----------IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL-----FYTFGVRV 97 ++ + D + H FD+ + G Sbjct: 471 KNLTHISDDMLVDAPEIDDVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERAGLGNYT 528 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 V T SR T +HGL K+ G+ +++ + A D Sbjct: 529 NGVIDTLELSRTINTEFGKHGLNFLAKKY-GVELTQHHR----------------AIYDT 571 Query: 158 VHLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 572 EATAYIFIKMLKQVEELG 589 >gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 942 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 15/164 (9%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--------AGQKNAPNLVGMLVDEKR 75 AVDTET L L + LS G I +A + L Sbjct: 370 AVDTETTSLDAFAAELVGISLSVKPGEACYIPVAHRNGEAQLDRDLVLARMKSWLESATH 429 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 K+ ++D + VF T + S + ++ H + + LG+ + + Sbjct: 430 LKVGQNLKYDSHIFANYGITLKGVVFDTLLESYVLESHLP-HNMDSLAERHLGMKTIRYE 488 Query: 136 QSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 + + +Q+ YAA D L L+ ++Q Sbjct: 489 EVCGKGVHQIGFDQVDLKIATDYAAEDADITLRLHLELWPQIQE 532 >gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum gryphiswaldense MSR-1] Length = 619 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 63/225 (28%), Gaps = 70/225 (31%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 +H G + E + +A D ET GL P + DR ++Q+ +RI G+ + Sbjct: 414 HLHAGGLTNEKLSDLT-FVAFDCETTGLRPDQGDR--LIQVGA-------VRIGQGRVLS 463 Query: 64 PNLVGMLVDEKR----------------EK-------IF--------------HYGRFDI 86 L+D K + H FD+ Sbjct: 464 GESFERLIDPGIPIPAQSMAYHGISNDMVKGKPPLAVVLPQFAAFAGASALAGHNVAFDL 523 Query: 87 AVLFYTFG----VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 L G +PV T I + L + L+ L Sbjct: 524 KFLHAAQGETGIALRQPVLDTMILAALLDPGYD-LSLEAVAGRL--------------GV 568 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 L A SD + + + L+ G L +C L Sbjct: 569 PPLPHRS---ALSDALVTAEILARLIAPLEARGIRTLGQACQASL 610 >gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] Length = 984 Score = 42.3 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 54/176 (30%), Gaps = 35/176 (19%) Query: 22 AIAVDTETLGLMPRRDRL-------CIVQLSPGDGTVDIIRIAAGQ-------KNAPNLV 67 +A DTET L PR L + I IA Q L Sbjct: 394 PVAWDTETSDLKPRNAELVGIGCCWGL-----EATDTAYIPIAHNQGQNLDQQTVLEALR 448 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 +L ++ K+ +FD VL V T +AS + N H L + Sbjct: 449 PILERDRYPKVLQNVKFDRLVLRTQGIKLAGVVMDTMLASYVLNP-DNSHNLNSLTERYF 507 Query: 128 ---------GINISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173 + I K + +LS + + Y V L + EKL+ Sbjct: 508 PQIQLKSYKDLKIPKGKT-----IAELSSKTVANYCGMQVYATFKLVPKLREKLEA 558 >gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41] gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41] Length = 1468 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 48/158 (30%), Gaps = 34/158 (21%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 P + D ET GL D L V++ G I Sbjct: 443 PEHRLLADATYVVFDVETTGLSTAYDTIIELAAVKIKDGHVIDKYESFANPHHPLSATTI 502 Query: 55 RIAAGQKN----APNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVR--VRP 99 + + AP + + + + + H FDI L + FG+ P Sbjct: 503 ELTGITDDMVRHAPEVEQVIKEFHAFIGDGIV-VAHNASFDIGFLYTGYKKFGLEGTTHP 561 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T +RL H L K+ I +++ ++ Sbjct: 562 VIDTLELARLLYPTMKNHRLNTLCKKF-NIELTQHHRA 598 >gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] Length = 877 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 14/91 (15%) Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS----------KAQQSSDWSADDLSDEQ 149 +F IA+ L N + D +E LG+N+ K + SD ++ + Sbjct: 391 IFDISIAAYLLNPLQNTYDYDDIAREYLGMNVPAFDEIFPKTKKNETPSD----EIPENI 446 Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 L+YA + + + TEKL+ D+ Sbjct: 447 LKYACYNAYVAYKAKDALTEKLKETEMLDIY 477 >gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] Length = 867 Score = 42.3 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 16/118 (13%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 L ++ D+ +K+ H G+ + ++ F T IA+ L + +++ + + + Sbjct: 366 LKNLMEDDNVKKVIHDGKN-FVTFLNKNQIEIKGFDFDTAIAAYLIDSSKSKYEILELVN 424 Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 +G N S+ A +L + + E L + L Sbjct: 425 HYIGDN-------------PNSEGSNIKAIL-CSYLPMVYEKLKENLHKENMDQLYYE 468 >gi|291044082|ref|ZP_06569798.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] gi|291012545|gb|EFE04534.1| DNA polymerase III [Neisseria gonorrhoeae DGI2] Length = 264 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 18 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 78 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 226 >gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2] gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2] Length = 1437 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 34/158 (21%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGT--------------VDIIRI 56 E A + I D ET GL ++ L V++ G I ++ Sbjct: 413 EAALATAEYIVFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYHIQQL 472 Query: 57 AAGQK----NAPNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGV-----RVRPVF 101 +AP L L + + + H RFDI + PV Sbjct: 473 TNINDEMVKDAPELEPKLREFIDFIGDSIL-VAHNARFDIGFIQANLKSIGMPDVTNPVL 531 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 T +R H L + +++ ++ D Sbjct: 532 DTLELARFLHPTMKNHRLNTLSAKY-KVSLDNHHRAVD 568 >gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis SK119] gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis SK119] Length = 1438 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDQIIELAAVKVKDGE-IIDKFERFSNPNEKLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4] gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4] Length = 1054 Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 37/159 (23%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 V + + + + L + K++H FD VLF G+ V+ + T +RL Sbjct: 381 VWVDNLDSAEGTLQLFKEFLESKNYLKVWHNYSFDRHVLFNH-GINVQGLGGDTMHMARL 439 Query: 110 ---TRTYTNQHGLKDNL-----------KELLGI-NISKA---------------QQSSD 139 R + L+ KEL GI + K Q+ + Sbjct: 440 WNTARFQNGGYSLESLTADLLLQRKKPMKELFGIPKLKKDGSKGKERIMPTVEELQRFPE 499 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + ++Y+ D L +KL + + Sbjct: 500 FRKR-----WIRYSVYDAESTWFLHRVLQDKLDQTFWFE 533 >gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi] gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi] Length = 1085 Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 49 GTVDIIRIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104 G V+ + K +P L ++ + KI H ++ I +L GV V+ Sbjct: 496 GKVEFLDSVNILKESPILSKVRTEIMENPNILKIGHNIKYHIKMLANY-GVTVKNFDDIM 554 Query: 105 IASRLTRTYTNQHGLKDNLKELL 127 + S + + H + + ++ +L Sbjct: 555 VMSYVLNCGKHGHEMDEIVENVL 577 >gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70] gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70] Length = 1435 Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 8/77 (10%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLK 120 + D + H FDI L F G PV T +R H L Sbjct: 492 FYDWMGD-SIL-VAHNASFDIGFLNVGFTKLGLGKVTNPVIDTLELARFLYPELKNHRLN 549 Query: 121 DNLKELLGINISKAQQS 137 K+ I +++ ++ Sbjct: 550 TLCKKF-DIELTQHHRA 565 >gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] Length = 903 Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 22/206 (10%) Query: 13 AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65 AR A A D ET L + + + I + AP Sbjct: 315 ENWVARLEKAELFAFDLETNNLDYIEAEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPRE 374 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119 L +L D + K+ +FD VL G+ ++ + + + S + + +H + Sbjct: 375 QVLARLKPLLEDPRHGKVGQNLKFDCNVLANY-GIELQGIRHDSMLESYVLDSTATRHNM 433 Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173 + L + + A L Q+ YAA D L F +LQ+ Sbjct: 434 DSLALKYLQRTTITYEMVAGKGAKQLPFNQVTIEKAAPYAAEDADISLQLHHCFWPRLQQ 493 Query: 174 -LGRSDLATS-CCNFLMDRAELDLLG 197 G L + + ++ G Sbjct: 494 EEGLRQLYQELEIPLIPVLSRMERNG 519 >gi|242761340|ref|XP_002340161.1| exonuclease, putative [Talaromyces stipitatus ATCC 10500] gi|218723357|gb|EED22774.1| exonuclease, putative [Talaromyces stipitatus ATCC 10500] Length = 709 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 43/149 (28%), Gaps = 39/149 (26%) Query: 21 DAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ----------------- 60 + +A+D E T G R+ +V DG V + ++ Sbjct: 329 EVLALDCEMCITEGGKSELTRISLV---NWDGEVILDKLVKPDLPIINYLTQFSGITKEM 385 Query: 61 ---------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110 L+ +L + H D+ L P + T I Sbjct: 386 LDPVTTTLADIQKELLELLTPRTIL-VGHSLNSDLTALK-----LTHPFIIDTAIIYPHP 439 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 R + LK ++ LG I K Q D Sbjct: 440 RGPPLKSSLKWLCQKYLGKEIQKGQTGHD 468 >gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 943 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 23/168 (13%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--------NLVGMLVDEKR 75 AVDTET L L + LS G I +A A + L Sbjct: 371 AVDTETTSLDALAAELVGISLSVKPGEACYIPVAHRNGEAQLSRELVLKRMKSWLESSSH 430 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI--- 131 K+ ++DI + + + + F T + S + ++ H + + LG+ Sbjct: 431 LKVGQNLKYDIHIFANY-DIHLEGIAFDTLLESYVLESHLP-HNMDSLAERHLGLKTIRY 488 Query: 132 ----SKAQQSSDWSADDLSDEQL--QYAASDVVHLHALRLQFTEKLQR 173 K + DL Q+ YAA D L L+ ++Q Sbjct: 489 EEVCGKGVHQIGFDQVDL---QIATNYAAEDADITLRLHLELWPQIQA 533 >gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] Length = 649 Score = 42.3 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 6/85 (7%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVR 98 S V II +A G+K P ++ L D+K K H F+ G + Sbjct: 41 STDGSEVKIIDLARGEKIPPLILSALEDDKVIKYAHNASFERICFSRFLGYPVGKYISPE 100 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNL 123 CT + + G+ L Sbjct: 101 SWRCTMTWAAYMGLPLSLVGVGAVL 125 >gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424] gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424] Length = 1446 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 53/198 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----------------GDGTV--D 52 P + R + D ET GL RDR +++++ + + Sbjct: 416 PKKLKLREATYVVFDVETTGLSAERDR--LIEIAAVKVKNGAEIDSFESYINPERPISEL 473 Query: 53 IIRIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTF---GVRVRP 99 I R+ + + AP ++ D E + H +FD+ + +F G+ + Sbjct: 474 ITRLTSITDDDVRDAPVEKEVMTDFYNWLDEDDILVAHNAKFDLGFIDKSFERLGLENKN 533 Query: 100 --VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 T SR +HGL + K + + + + A D Sbjct: 534 NASIDTLFISRAENKEAKRHGLSNLAKMY-KVRLVQHHR----------------AIYDT 576 Query: 158 VHLHALRLQFTEKLQRLG 175 + ++ +L LG Sbjct: 577 KATAEIFIKMLNQLYALG 594 >gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis subsp. hominis C80] gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus hominis subsp. hominis C80] Length = 1438 Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDQIIELAAVKVKDGE-IIDKFERFSNPHEKLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|326431819|gb|EGD77389.1| hypothetical protein PTSG_08484 [Salpingoeca sp. ATCC 50818] Length = 656 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 21/132 (15%) Query: 31 GLMP--RRDR--LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI 86 L LC+ S G T I K +L +L + K+ + R D+ Sbjct: 52 RLRTSEYSPIASLCL---SSGSNTF-IFTCVESGKMPASLQLLLTHQDYTKVGYNVREDL 107 Query: 87 AV-LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ------QSSD 139 V ++ FG+ + PV L + G K+ + + SD Sbjct: 108 IVKMYVDFGIELGPVHD------LHDILEQETGCKNLFAAFRREFPGSSYYYEPSLRFSD 161 Query: 140 WSADDLSDEQLQ 151 W + L+++Q+ Sbjct: 162 WWQEQLTEDQVA 173 >gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779] gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779] Length = 1464 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 418 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNIIAEFDEFINPGHPLSAFT 474 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA LV +L + + + H FD+ + + +P Sbjct: 475 TELTGITDDHVKNAKPLVQVLKEFQEFCKDTVLVAHNASFDVGFMNANYERHGLPKITQP 534 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 535 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 566 >gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor] gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor] Length = 1178 Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 50/174 (28%) Query: 42 VQLSP---GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 VQ + G + + + G+ D +K++H FD V+ G++V Sbjct: 465 VQAADFGNGKTCIWVDVLDGGRGVLMEFAPFFEDPSIKKVWHNYSFDNHVIENY-GIKVA 523 Query: 99 PV-FCTKIASRL---TRTYTNQHGLKDNL---------------------KELLG----- 128 T +RL +R + L+ K + G Sbjct: 524 GFRADTMHLARLWDSSRKIDGGYSLEGLTNDRRVMDTVPEDLPKPGKISMKTIFGRKKVR 583 Query: 129 --------INIS--KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 ++I K Q D +L + Y++ D + L KL+ Sbjct: 584 KDGSEGKVVSIDPVKELQRED---REL---WICYSSLDSMSTLRLYESLKRKLE 631 >gi|260440770|ref|ZP_05794586.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI2] Length = 255 Score = 41.9 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%) Query: 11 IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61 + + R+ +AV D E+ G DR+ +V Q + K Sbjct: 9 LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68 Query: 62 ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100 +AP + K + H RFD L + F G+ P Sbjct: 69 AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR +H L ++ LGI + + A +DV Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169 Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 AL L G + + C L +R L G + Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 217 >gi|332969120|gb|EGK08156.1| DNA-directed DNA polymerase I [Psychrobacter sp. 1501(2011)] Length = 1018 Score = 41.9 bits (98), Expect = 0.048, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 50 TVDIIRIAAGQKN----APNLVGMLVDEKREKIFHYGRFDIAVLFYT---FGVRVRPV-F 101 ++ + A Q + L +L + + KI + ++D VL + Sbjct: 464 NAEVDPLIAKQLDRDMVLTKLKPILENPEIGKIGQHLKYDAHVLRKYGIELNTSPKNWEM 523 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELL 127 T +AS + +H + D + L Sbjct: 524 DTMLASYVLNAAATRHSMDDLARHYL 549 >gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912] gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912] Length = 1464 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 42/164 (25%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP---------GDGTVD 52 I +E D+ + D ET GL D ++Q++ + Sbjct: 411 PITYNEVDLD----LNEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIEEFDEF 463 Query: 53 IIR--------------IAAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89 I + A LV +L + E + H FD+ + Sbjct: 464 IDPGHPLSAFTTQLTGITNEHVRGAKPLVQVLKEFQAFCEGTVLVAHNATFDVGFMNANY 523 Query: 90 -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + +PV T +R +HGL K G+ + Sbjct: 524 ERHGLPKITQPVIDTLEFARNLYPDFKRHGLGPLTKRF-GVGLE 566 >gi|255573515|ref|XP_002527682.1| 3-5 exonuclease, putative [Ricinus communis] gi|223532913|gb|EEF34681.1| 3-5 exonuclease, putative [Ricinus communis] Length = 211 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 19/139 (13%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR----FDIAVLFYTFGVRV 97 +QL G I ++ + +L L + + D+ L +G+ V Sbjct: 78 LQLCIGS-RCLIYQLIHSPRIPQSLFDFLKNSSYV----FAGVGIESDVEKLVEDYGLSV 132 Query: 98 RPVFCTK----IAS-RLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150 V +A+ L GLK+ +K++LG I K S W + LS +Q+ Sbjct: 133 GNV---MELRRVAAESLGVKELKNAGLKELVKQVLGKEIQKPKRVTMSRWDSMWLSHDQV 189 Query: 151 QYAASDVVHLHALRLQFTE 169 QYA D + T+ Sbjct: 190 QYACLDAFVCSEIGRILTQ 208 >gi|159470079|ref|XP_001693187.1| predicted protein [Chlamydomonas reinhardtii] gi|158277445|gb|EDP03213.1| predicted protein [Chlamydomonas reinhardtii] Length = 931 Score = 41.9 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 21/89 (23%) Query: 85 DIAVLFYTFGVRVRPVFCTKI------ASRLTRTYT------NQHGLKDNLKELLGINIS 132 D+++L +G+ + P+ T++ A+ L YT + GL L + G+ + Sbjct: 807 DVSLLHTQYGILLGPLVDTQLVYGTAQATWLGLPYTCRKLLAPRAGLGAMLGGV-GLRLP 865 Query: 133 -----KAQQSSD---WSADDLSDEQLQYA 153 K+ D W L+ ++YA Sbjct: 866 YKADVKSLYRKDRNFWKQRPLTPAMIEYA 894 Score = 34.6 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 16/48 (33%) Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187 WS L+ E ++YA + L L R + C L Sbjct: 548 WSQRPLTREMIKYAVQGAAAAEEAQDHVDLWLPVLDRRHAYAAECQAL 595 >gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parasanguinis F0405] gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parasanguinis F0405] Length = 1464 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 42/164 (25%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP---------GDGTVD 52 I +E D+ + D ET GL D ++Q++ + Sbjct: 411 PITYNEVDLD----LNEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIEEFDEF 463 Query: 53 IIR--------------IAAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89 I + A LV +L + E + H FD+ + Sbjct: 464 IDPGHPLSAFTTQLTGITNEHVRGAKPLVQVLKEFQAFCEGTVLVAHNATFDVGFMNANY 523 Query: 90 -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + +PV T +R +HGL K G+ + Sbjct: 524 ERHGLPKITQPVIDTLEFARNLYPDFKRHGLGPLTKRF-GVGLE 566 >gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2] gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2] Length = 1458 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 49/181 (27%) Query: 22 AIAVDTETLGLMPRRDRL----------CI----VQLS--PGDGTVDII---------RI 56 + D ET GL P D++ + +Q+ P + D I + Sbjct: 421 YVIFDIETTGLSPYYDKIIEFGAIKYHKGVQVESIQMFINPEEKISDKIFAITKISNEDV 480 Query: 57 AAGQKNAPNLVGM--LVDEKREKIFHYG-RFDIAVL-----FYTFGVRVRPVFCTKIASR 108 K LV + + + I H G +FD+ L + P+ T SR Sbjct: 481 KDALKIKEALVKIKDFIGDSVL-IAHNGIKFDLPFLNCKLEENKMDIIKNPLIDTLQISR 539 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + H L ++ I + Q A D +L + + Sbjct: 540 AINEQIHGHSLGVIARKY---KIDYDET------------QAHRADKDAEYLLNIWKRML 584 Query: 169 E 169 E Sbjct: 585 E 585 >gi|159475607|ref|XP_001695910.1| hypothetical protein CHLREDRAFT_174455 [Chlamydomonas reinhardtii] gi|158275470|gb|EDP01247.1| predicted protein [Chlamydomonas reinhardtii] Length = 432 Score = 41.9 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 18/47 (38%) Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105 G +L +L + K+ H I + G V P+ TK+ Sbjct: 309 GLDLMGSLRAVLEEPGVAKVVHGCEQVIPWVESAAGCFVSPLLDTKL 355 >gi|157265305|ref|YP_001467864.1| DNA polymerase I [Thermus phage P23-45] gi|156905200|gb|ABU96844.1| DNA polymerase I [Thermus phage P23-45] Length = 728 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 51/151 (33%), Gaps = 24/151 (15%) Query: 1 MTTIRVHEGDI--PAECAARYVDAIAVDTETLGLMPRRDRLCI-------VQLSPGDGTV 51 M + V D A A +A+DTET G P L + V ++ Sbjct: 1 MRSYHVVTNDTFPLALDAIAQAPRVALDTETYGSDPFN--LYLPDFRLVGVAIATSPTEA 58 Query: 52 DIIRIAAGQKNAP----NL------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 + NL +L KR ++H +D VL T + + + Sbjct: 59 WYFPVDHQDFLLRYQPANLPREAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTY 118 Query: 102 --CTKIASRLTRTYTNQHGLKDNLKELLGIN 130 T +A L GLK+ K LLG+ Sbjct: 119 GDDTMVALHLVDENHP-LGLKEWAKTLLGLE 148 >gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903] gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903] Length = 1464 Score = 41.9 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 42/164 (25%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP---------GDGTVD 52 I +E D+ + D ET GL D ++Q++ + Sbjct: 411 PITYNEVDLD----LNEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIEEFDEF 463 Query: 53 IIR--------------IAAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89 I + A LV +L + E + H FD+ + Sbjct: 464 IDPGHPLSAFTTQLTGITNEHVRGAKPLVQVLKEFQAFCEGTVLVAHNATFDVGFMNANY 523 Query: 90 -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + +PV T +R +HGL K G+ + Sbjct: 524 ERHGLPKITQPVIDTLEFARNLYPDFKRHGLGPLTKRF-GVGLE 566 >gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1] gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type) [Anoxybacillus flavithermus WK1] Length = 1430 Score = 41.9 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 27/126 (21%) Query: 60 QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRL 109 K+AP++ +L + + H FDI L F G PV T +R Sbjct: 474 LKDAPDVEEVLEKFYHWIDDCVLVAHNATFDIGFLNAGFKKINRGKVTNPVIDTLELARY 533 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 H L K+ I +++ ++ Y A +L + + Sbjct: 534 LYPELKNHRLNTLCKKF-NIELTQHHRAI-------------YDAEATGYLL---IHLLK 576 Query: 170 KLQRLG 175 +L G Sbjct: 577 ELDEKG 582 >gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus caprae C87] gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus caprae C87] Length = 1442 Score = 41.9 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 416 PTDRVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 474 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 475 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 577 ATAYIFIKMIQQMKELG 593 >gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sicca ATCC 29256] gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria sicca ATCC 29256] Length = 449 Score = 41.9 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 63/201 (31%), Gaps = 56/201 (27%) Query: 25 VDTETLGLMPRRDRL----------------------------CIVQLSPGDGTVDIIRI 56 VD E+ G +DR+ +VQL G + + Sbjct: 3 VDLESTGGNLYQDRVTEIAFLRFENGRVEHYEQLINPGKPIPEFVVQL-TGITNEMVAQA 61 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GV-RVRPVFCTKIASRLTRT 112 A + AP+++ +L + H RFD L + F G+ P CT SR Sbjct: 62 PAFDQIAPDILPLLRGSLI--VAHNSRFDYTFLRHEFYRAGIDFAAPALCTVQLSRRLYP 119 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 +H L + + GI + A +DV AL L+ Sbjct: 120 QFYKHNLDSIISRM-GIQTDDRHR----------------ALADV---LALADYLEHSLK 159 Query: 173 RLGRSDLATSCCNFLMDRAEL 193 + + C LM+ L Sbjct: 160 EKTSDEW-DNHCRTLMNPKIL 179 >gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] Length = 878 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 29/144 (20%) Query: 56 IAAGQKNAPNL---VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 + G + L + D K H + L + + + F + +A+ L Sbjct: 352 LPLGAADLEILAGVRRLFADAAVAKHMHNAK---DFLRWAPDFDLANICFDSMVAAYLVN 408 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L+D + + L + + D A + A+D + L +L Sbjct: 409 PLAANQQLEDVVHQYLNLVLV-----PDGPAAPAT-------AAD--CIRRLYPVLRAEL 454 Query: 172 QRLGRSDLATSCCNFLMDRAELDL 195 + ++L DR EL L Sbjct: 455 R--------GYELDYLFDRVELPL 470 >gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994] gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994] Length = 909 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 27/199 (13%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----------QKNAPNLVGMLVD 72 IA DTET GL P +D L S T + + + A + + Sbjct: 341 IAFDTETTGLDPSKDHLVGFSFSTDGKTGYYVPMMHSYLGVGDQVSTEAAAKAIRLIFEH 400 Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 I H +FD+ + GV ++ T + + LT + + + + + LL + Sbjct: 401 R---VIGHNIKFDLHFVTRFLGVDRLSIYADTMVLAWLTDS-SRSLAMDNLSQSLLHHEM 456 Query: 132 -------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184 K + + + ++ +YA D + L E+L G + Sbjct: 457 IHFKDTVKKGENFASVAI----EDACKYAGEDAYITYRLYEVLKEQLLLKGGQEALDEAF 512 Query: 185 NFLMDRAELDLLGWENVDI 203 + L LLG E I Sbjct: 513 DV-EFPFTLTLLGMEKEGI 530 >gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] Length = 882 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 54/150 (36%), Gaps = 32/150 (21%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF---DIA----VLFYTFGVR 96 +S G + I A + L+ LV K H GRF D+ L G Sbjct: 355 ISFGKEKIYCIP-AGNGYSMEELLEALVH--VAK--HAGRFVVFDLKSSLPYLKGLEGAA 409 Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS-KAQQSSDWSADDLSDEQL---QY 152 F + +A+ L N +G +D +E LG+ I K + L ++ + Y Sbjct: 410 EEKCFDSIVAAYLLNPLKNDYGFEDVAQEHLGLMIDPKTE---------L-EKMVCYEAY 459 Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATS 182 AA A EKL++ L T Sbjct: 460 AA------FASSEVLEEKLKKEEMWKLFTE 483 >gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. AzwK-3b] gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. AzwK-3b] Length = 481 Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 45/139 (32%), Gaps = 36/139 (25%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVD-------IIRIAAGQKN--- 62 +A DTET GL + D +VQL T+D I A+ + + Sbjct: 277 FVAFDTETTGLSAQTDD--VVQLGAVRVLNGRVVPGETLDTYVNPGRPIPPASTEIHRVT 334 Query: 63 ------APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPVFCTKIAS 107 A + V + + + H FD+A L PV T + S Sbjct: 335 DGHVRGASDFVTVGRNFHHFARDAVLVAHNAPFDLAFLHRFADRMGVEWTHPVLDTVLLS 394 Query: 108 RLTRTYTNQHGLKDNLKEL 126 + T QH L L Sbjct: 395 AVVFGTTEQHSLDALCDRL 413 >gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii] gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii] Length = 788 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 43/168 (25%) Query: 47 GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105 G V + + G + + +KI+H FD +L G++ + T Sbjct: 66 GKSRVWVDLLNGGPGILDVFRPYFENAEIKKIWHNYSFDKHILGNY-GIKAAGFYADTMH 124 Query: 106 ASRLTRTYTNQHGL--------------------KDNLKELLGINISKA----------- 134 +RL + G K ++K+L I K Sbjct: 125 LARLWDSARGGLGYSLEALTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIP 184 Query: 135 -----QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 Q S D D+ + Y+A D V L +KLQ+ Sbjct: 185 PVEELQTSKD--TR---DKWIYYSAHDSVCTWHLWSSLKKKLQKASWY 227 >gi|238575785|ref|XP_002387790.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553] gi|215448580|gb|EEB88720.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553] Length = 361 Score = 41.9 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 41/193 (21%) Query: 20 VDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76 + +D E D+ + ++QL+ G T I +A + +L Sbjct: 24 HGHVGLDIE-WKPNRHGDQHNEVAMLQLATGTETFLI-HVAKIGHLPTIVTNLLESPLIW 81 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFC----------------TKIASRLTRTYTN----- 115 K + D+ L F V + T I S + R N Sbjct: 82 KAGVGIQEDVKKLHRDFHVSITSCVDLSMLALSIDCLQFEERTGIYSAIPRGIENTAEKH 141 Query: 116 ---------QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 L K G+ ++K +DW DL+ E+ + ++D HA Sbjct: 142 RTYKGHIKRAIALSKLAKSYAGMELTKNNAMTDWEKKDLTQEEKE--SNDA---HAGFAI 196 Query: 167 FTEKLQRLGRSDL 179 LQ + R +L Sbjct: 197 LKGLLQTM-RYEL 208 >gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus capitis SK14] gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus capitis SK14] Length = 1438 Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 36/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PTDRVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T SR T +HGL K+ G+ +++ ++ Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHRA 567 >gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656] Length = 1510 Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 21/106 (19%) Query: 78 IFHYGRFDIAVLFYT---FGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H FD++ + G+ P + T +R+ N+ L + + L I++ Sbjct: 562 VAHNADFDMSFIKRNCALLGMECNPTIVDTVALARVLLPQLNRFKLDT-VAKALNISLDH 620 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 + A D + ++F EKL+ G S L Sbjct: 621 HHR----------------AVDDAACTAEIFVKFIEKLKDRGISSL 650 >gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM 15981] gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM 15981] Length = 1561 Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 7/95 (7%) Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTK 104 ++ P + + D + H FD+ + + G+ P V T Sbjct: 593 NDAMVLPYPKIDVILPQFLEFVGDAAL--VAHNASFDVGFIGHYAEKQGLAFNPTVLDTV 650 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 +RL N+ L + + L I+++ ++ D Sbjct: 651 TMARLLLPNLNRFKLDT-VAKALNISLANHHRAVD 684 >gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926] gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926] Length = 1442 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 47/166 (28%), Gaps = 45/166 (27%) Query: 12 PAECAARYVDAIAVDTETLGLMPR--------------------RDRLCIVQLSPGDGTV 51 P + + + D ET+GL +L ++PG Sbjct: 405 PKDVLIQDETYVVYDLETMGLNSHENEIIEIGAIKLKGTRIVDKYSQL----INPGKSIP 460 Query: 52 DIIRIAAGQKN------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR- 98 I+ G + P + D + H RFDI L Sbjct: 461 SKIQELTGITDDMVKDEPSIEEVLPGFLEFAGDATL--VAHNARFDIGFLTRDVKKYTNI 518 Query: 99 -----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 V T +R +GLK K+ LG+ + ++ D Sbjct: 519 KDYKPSVIDTLQWARDLLPDLRGYGLKSVTKK-LGVALENHHRAVD 563 >gi|255930624|ref|XP_002556870.1| Pc09g00030 [Penicillium chrysogenum Wisconsin 54-1255] gi|211581486|emb|CAP79250.1| Pc09g00030 [Penicillium chrysogenum Wisconsin 54-1255] Length = 534 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 20/101 (19%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR--------LTRTYTNQH 117 L + D + H ++D+ VL G+ V + I + T+ T Sbjct: 363 LWEFMDDSTVL-VGHSLQYDLEVL----GISHAKVVDSAILTAETVYSSIPSTKPLTRNW 417 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 GLK K+ G+NI Q+SD + L D YAA DVV Sbjct: 418 GLKTLAKDFXGLNI----QTSDRGHNALEDA---YAARDVV 451 >gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20] gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20] Length = 894 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 11/105 (10%) Query: 34 PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---VGMLVDEKREKIFHYGRFDIAVLF 90 +L + +SP + + +L D +K H D+ Sbjct: 337 SFSQKLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGH----DLKNFI 392 Query: 91 YTF---GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 G+ + F T I + + + + + +E L +++ Sbjct: 393 VYLNNRGIDFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSV 437 >gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum NCTC 2916] gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum NCTC 2916] Length = 1432 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 7/91 (7%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108 + K P + + D + H FD++ + + V T SR Sbjct: 477 VDDKETIDKILPRFIDFIGDS--VVVAHNASFDVSFINKNCKDLKIEFENSVMDTVTLSR 534 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 +H L + + + LGI++ ++ D Sbjct: 535 FLFPELKRHKL-NVIAKHLGISLENHHRAVD 564 >gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313] Length = 894 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 11/105 (10%) Query: 34 PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---VGMLVDEKREKIFHYGRFDIAVLF 90 +L + +SP + + +L D +K H D+ Sbjct: 337 SFSQKLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGH----DLKNFI 392 Query: 91 YTF---GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 G+ + F T I + + + + + +E L +++ Sbjct: 393 VYLNNRGIDFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSV 437 >gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] Length = 896 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 27/156 (17%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTN 115 Q+ L + + EK H D+ L+ G+ + +F T IA+ + + Sbjct: 371 QEALNELREIFESKDIEKYGH----DLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRS 426 Query: 116 QHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQ----LQYAASDVVHLHALR 164 + + + ++ L +I K L EQ + A+ V ++ L Sbjct: 427 TYTISELYEDKLKQSITPVEILYDKH------GKR-LQQEQDISSSEVCAAAVNAIYVLI 479 Query: 165 LQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWE 199 + ++ G+ +L + A+++L G++ Sbjct: 480 QKLRPIIRDNGQDELYYEIELPLVEVLADMELRGFK 515 >gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A] gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A] Length = 986 Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 45/139 (32%), Gaps = 23/139 (16%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--------------- 64 IA+DTET L P + L + G+ DI+ I G +N Sbjct: 384 TKPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHQNKEGDLIKINQINQLKIE 443 Query: 65 ----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L + K ++D +L + V T +A + T +H L Sbjct: 444 EVIFALQDWFSSNENHKTLQNAKYDRLILLRHGIILNGVVIDTLLADYIFDA-TLKHSLD 502 Query: 121 DNLKELLGINISKAQQSSD 139 + G K + SD Sbjct: 503 EIAYREFGF---KPKSFSD 518 >gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata] gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata] Length = 608 Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 14/131 (10%) Query: 12 PAECAAR--YVDAIAVDTET-----LGLMPRRDR--LCIVQLSPGDGTVDIIRIAAGQKN 62 PA AA + +D ET G L +VQL + + Q+ Sbjct: 27 PAAMAADLDGEPILGLDVETRALPDTGPRHFGPDAGLRLVQLGTATVAWVLDPLDPAQRA 86 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRT-YTNQHGLK 120 A + +L D R + H FD ++ + + V T + S+L HGLK Sbjct: 87 A--IAAVLGDPGRRFVTHT-SFDTLAVWSALAIGLGQRVADTHLISKLVDPDERAGHGLK 143 Query: 121 DNLKELLGINI 131 L + Sbjct: 144 TLTARHLDDGL 154 >gi|169346903|ref|ZP_02865851.1| DNA-directed DNA polymerase [Clostridium perfringens C str. JGS1495] gi|169296962|gb|EDS79086.1| DNA-directed DNA polymerase [Clostridium perfringens C str. JGS1495] Length = 642 Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 24/113 (21%) Query: 69 MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTN-----QHGLKDN 122 + +E K+ H F+ + L+ V PVF T + S LT +++ + GLK Sbjct: 93 VFHNESLIKVAHNIAFESSFLYEYGIVIKEPVFDTMLGSMLTFKSFGEFRTLRECGLKLL 152 Query: 123 LKELLGINISKAQQSS--------DWSADDLSDEQLQ---YAASDVVHLHALR 164 KE+ ++ S D +L E + YA +D + L Sbjct: 153 AKEIFNEDLP---SFSHVVNGTHFD----NLHSEHKETVRYACADSDYALRLY 198 >gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] Length = 876 Score = 41.5 bits (97), Expect = 0.062, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Query: 66 LVGMLVDEKREKIFHYGRFDIAV---LFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121 + +E K+ +D+ V + Y G+R + F KIA+ L + + + LKD Sbjct: 375 FKLLFENEGISKV----GYDVKVPCSILYKMGIRFLKLEFDIKIAAYLIDSSRSDYELKD 430 Query: 122 NLKELLGINISKA 134 +++ G+ IS+ Sbjct: 431 IIRQYTGVEISED 443 >gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella haemolysans ATCC 10379] gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella haemolysans ATCC 10379] Length = 1449 Score = 41.5 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 53/198 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIA------------ 57 P E + + D ET GL RDR +++++ +I Sbjct: 419 PKELKLKDATYVVFDVETTGLSAERDR--LIEIAAVKVKNGAEIDSFESYINPQRPISEL 476 Query: 58 ---------AGQKNAPNLVGMLV------DEKREKIFHYGRFDIAVL---FYTFGVRVRP 99 K+AP ++ D+ + H +FD+ L F G+ + Sbjct: 477 ITRLTSITNDDVKDAPLEKEVMTNFYNWLDKDDILVAHNAKFDLGFLDTCFERLGLENKN 536 Query: 100 --VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 T SR +HGL + +L + + + + A D Sbjct: 537 NASIDTLFVSRAENKEAKRHGLSNL-AKLYKVRLVQHHR----------------AIYDT 579 Query: 158 VHLHALRLQFTEKLQRLG 175 + ++ ++L LG Sbjct: 580 KATAEIFVKMLDQLYELG 597 >gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032] gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032] Length = 899 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 25/78 (32%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 + + L G L DE R K+ H + + T+IA+ L R Sbjct: 365 DPSRLDESDEAALAGWLADETRPKVLHDSKPAVLAFAAHGWTLAGIARDTQIAAYLARPD 424 Query: 114 TNQHGLKDNLKELLGINI 131 + L D L + Sbjct: 425 QRSYDLTDLALRYLHREL 442 >gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 591 Score = 41.5 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 7/92 (7%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101 + GD V + + AG+ L + D FH FD VL + V Sbjct: 36 AIGDEPVSVWDLTAGEPIPGRLQKAIADPDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWR 95 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 T + + L G L E+LG+ K Sbjct: 96 DTMVQA-LAHGLPGALG---ALCEVLGVPQDK 123 >gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] Length = 986 Score = 41.5 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 26/147 (17%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG--------- 68 + +A+DTET L P L + + G+G D+ I G L+ Sbjct: 383 DRLKPVALDTETTALNPFCAELVGLGVCWGEGLQDLAYIPIGHHPPAELLEAEAACQLPL 442 Query: 69 ---------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 L K ++D +L V T +A R +HGL Sbjct: 443 EAVLKAIAPWLASNDHPKALQNAKYDRLILLRHGLALEGVVMDTLLA-DYLRDAAAKHGL 501 Query: 120 KDNLKELLGIN-------ISKAQQSSD 139 + + I + K Q +D Sbjct: 502 EVMAEREFKITPTGFSELVGKGQTFAD 528 >gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9] gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus thermophilus LMD-9] gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03] Length = 1464 Score = 41.5 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 38/155 (24%) Query: 12 PAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDI-IRIAA 58 + + D ET GL D ++Q++ D +D ++A Sbjct: 416 SENLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIVEQFDEFIDPGYPLSA 472 Query: 59 GQKN-----------APNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRV 97 A LV +L + + + H FD+ + + Sbjct: 473 FTTELTGITDNHVKGAKPLVQVLQEFQEFCKGAVLVAHNATFDVGFMNANYERHQLPTIS 532 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +PV T +R +HGL K G+ + Sbjct: 533 QPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566 >gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311] gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG 18311] Length = 1464 Score = 41.5 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 38/155 (24%) Query: 12 PAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDI-IRIAA 58 + + D ET GL D ++Q++ D +D ++A Sbjct: 416 SENLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIVEQFDEFIDPGYPLSA 472 Query: 59 GQKN-----------APNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRV 97 A LV +L + + + H FD+ + + Sbjct: 473 FTTELTGITDNHVKGAKPLVQVLQEFQEFCKGAVLVAHNATFDVGFMNANYERHQLPTIS 532 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +PV T +R +HGL K G+ + Sbjct: 533 QPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566 >gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066] gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus CNRZ1066] Length = 1464 Score = 41.5 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 38/155 (24%) Query: 12 PAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDI-IRIAA 58 + + D ET GL D ++Q++ D +D ++A Sbjct: 416 SENLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIVEQFDEFIDPGYPLSA 472 Query: 59 GQKN-----------APNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRV 97 A LV +L + + + H FD+ + + Sbjct: 473 FTTELTGITDNHVKGAKPLVQVLQEFQEFCKGAVLVAHNATFDVGFMNANYERHQLPTIS 532 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +PV T +R +HGL K G+ + Sbjct: 533 QPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566 >gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 958 Score = 41.5 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 47/151 (31%), Gaps = 35/151 (23%) Query: 21 DAIAVDTETLGLMPRRDRL------------------CIV----------QLSPGDGTVD 52 +A+D ET G P DRL ++ Q G Sbjct: 5 SFVAIDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRLIDPGCPVPQRIQHLTGIHPAM 64 Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASR 108 + ++ P+L L D + H FD+A L F + T +R Sbjct: 65 LAGKPRIEEVVPDLASFLGD--LPLVAHNAPFDVAFLQAAFARAGRSLPNWSYDTAELAR 122 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 + H L ELLG+ + ++ D Sbjct: 123 VALPLARNHRLATL-AELLGLPLEHHHRAED 152 >gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C150] gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C150] Length = 1464 Score = 41.5 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 38/155 (24%) Query: 12 PAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDI-IRIAA 58 E + + D ET GL D ++Q++ D +D ++A Sbjct: 416 SEELELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIIEQFDEFIDPGYPLSA 472 Query: 59 GQKN-----------APNLVGMLVDEKR-----EKIFHYGRFDIAVL-----FYTFGVRV 97 A L+ +L + + + H FD+ + Sbjct: 473 FTTELTGITDNHVKGAKPLLQVLQEFQVFCQGTVLVAHNATFDVGFMNANYERNQLPTIS 532 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +PV T +R +HGL K G+ + Sbjct: 533 QPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566 >gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] Length = 905 Score = 41.5 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 44 LSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 ++ G + + + L L D + K H + + L G+ + + Sbjct: 360 IADESGRAAYVDLTTLAPEDEQALAEWLADVTKAKALHDAKGPMHALAAR-GLTLAGLTN 418 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 T IA+ L R +G +D L I + + + + Sbjct: 419 DTAIAAYLVRPDQRSYGFEDLLLRYCHIELPETSKQA 455 >gi|71404664|ref|XP_805020.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70868260|gb|EAN83169.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 447 Score = 41.5 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 26/163 (15%) Query: 16 AARYVDAIAVDTETLGLMPRRD----RLC-IVQLSPGDGTVDIIRIAAGQKNA----PNL 66 A V+ +AV + L RLC IV ++ + +D+ +AA NL Sbjct: 168 CAHSVEPVAV----VQLSTFSVTFVIRLCDIVCMTRPENCIDVSEVAAVSSTLGVVLDNL 223 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIA--SR-LTRTYTNQHGLKDN 122 + +L +++ K+ D L + + R+ P C ++A +R L T + GL+ Sbjct: 224 ISLLANKRVAKVGVGIIGDQEKLQHDYTAFRLCP--CVELAVLARHLFPTAEDVMGLRSL 281 Query: 123 ---LKELLGINISKAQ--QSSDWSAD--DLSDEQLQYAASDVV 158 + K SDW + LS QL+YAA+D Sbjct: 282 KDFAARFASRKLKKDILVTCSDWGSSLGALSPLQLEYAAADAE 324 >gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri] gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri] Length = 968 Score = 41.5 bits (97), Expect = 0.072, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 46/164 (28%), Gaps = 47/164 (28%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL-- 109 + + G+ + +K++H FD V+ G+++ T +RL Sbjct: 247 VDTLRGGEGVWEVFKEYFENPNVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARLWN 306 Query: 110 -TRTYTNQHGLKDN---------LKELLGI------------------NISKAQQ----- 136 R + L+ E+LG + K Sbjct: 307 SNRGLDGGYSLEALSSSAEVMSDCAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTI 366 Query: 137 --------SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 D D+ ++Y+A D LR KL+ Sbjct: 367 ILPPVEEIQEDVEQR---DKWIEYSALDAQATWFLRESLEAKLR 407 >gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus pseudintermedius ED99] Length = 1435 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 62/197 (31%), Gaps = 54/197 (27%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 P++ + + D ET GL + D+ L V++ G+ I + L Sbjct: 410 PSDIMLQDATYVVFDVETTGLSNQYDKIIELAAVKVKNGE---IIDKFERFSNPHEKLTE 466 Query: 69 -----------MLVD-EKREKIF--------------HYGRFDIAVL-----FYTFGVRV 97 ML D + E++ H FD+ + FG Sbjct: 467 TIKNLTHITDDMLKDAPEIEEVLTEFKAWVGDAIFVAHNASFDMGFIDTGYERLGFGPSA 526 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 V T SR T +HGL K+ G+ +++ + A D Sbjct: 527 NAVIDTLELSRTINTSYGKHGLNFLAKKY-GVELTQHHR----------------AIYDT 569 Query: 158 VHLHALRLQFTEKLQRL 174 + ++ +L+ L Sbjct: 570 EATAYIFVKMLAQLKAL 586 >gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563] gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563] Length = 1439 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 P + + D ET GL D L V++ G+ I L Sbjct: 413 PDHIELKEATYVVFDVETTGLSAIYDNIIELAAVKMQNGN---VIDTFEEFINPGRPLSA 469 Query: 69 -----------MLVDEKREK---------------IFHYGRFDIAVL-----FYTFGVRV 97 ML + + EK + H FD+ + + F Sbjct: 470 TIIDLTGITDAMLANTRTEKEVISDFREWVGDAIFVAHNASFDMGFIDTAYNRHGFEKSH 529 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T SR H L K + + + ++ Sbjct: 530 NAVIDTLEMSRFLHPNLKSHRLNTLAKRY-NVALEQHHRA 568 >gi|89901599|ref|YP_524070.1| 3'-5' exonuclease [Rhodoferax ferrireducens T118] gi|89346336|gb|ABD70539.1| 3'-5' exonuclease [Rhodoferax ferrireducens T118] Length = 198 Score = 41.5 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 111 RTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 R Y G+K + L SK +S+W+ LS QL YAA+D + Sbjct: 137 RGYRKDMGVKGAVAVLFNQRFIKSKKATTSNWALPSLSQAQLVYAANDAYAAVRVFHAL 195 >gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78] gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78] Length = 919 Score = 41.5 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 11/103 (10%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 + + + L D +R K+ H + + V G+ V V T + + L + Sbjct: 484 PSSLDEDDERAFADWLGDPERPKVMHDAKGLMRVFGEH-GMTVAGVAMDTALGAYLVKPG 542 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 L E LG + AQ+ SD QL + A D Sbjct: 543 RRTFALDALSLEYLGRELVPAQE---------SDGQLAFGADD 576 >gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] Length = 874 Score = 41.5 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 22/133 (16%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTF---GVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L+D + H D+ L+ G+ P F T +A+ L + + L D ++ Sbjct: 368 LLDSGARLVGH----DLKPLYNWLYSQGIEPPAPAFDTALAAYLLDPSRSSYDLADLCRQ 423 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184 + W+ L L + +L G L Sbjct: 424 HGLGELPPGDTPDLWATR-------------ASVLPELHRRMEAELAAQGVDRLYREVEL 470 Query: 185 NFLMDRAELDLLG 197 + AE++ +G Sbjct: 471 PLMPILAEMEAVG 483 >gi|330939771|ref|XP_003305888.1| hypothetical protein PTT_18843 [Pyrenophora teres f. teres 0-1] gi|311316927|gb|EFQ86028.1| hypothetical protein PTT_18843 [Pyrenophora teres f. teres 0-1] Length = 348 Score = 41.1 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 25/143 (17%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASRLTRTYTNQ---HGL 119 L +L K+F R D LF + + + + ++ A+R T ++ L Sbjct: 141 LKTILESPTIPKVFFDVRNDSDALFAHYKIALSCIHDLQVMELATRTVTTGNSRDFLCSL 200 Query: 120 KDNLKE---LLGINIS----------------KAQQSSDWSADDLSDEQLQYAASDVVHL 160 +++ L +++ K + + L + +Y DVV++ Sbjct: 201 STCIRDNAALSPVDLDAWKAIKEAGNALFNPHKGGSYAVFETRPLEKDVQEYCVQDVVYM 260 Query: 161 HALRLQFTEKLQRLGRSDLATSC 183 L F +++Q+ + + Sbjct: 261 PLLWSVFEKRIQKDRLYEAEMAE 283 >gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074] gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074] Length = 908 Score = 41.1 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 2/79 (2%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRT 112 + + L R KI H + + V G RV V T +A+ L + Sbjct: 379 DPARLDEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTMDTALAAYLVKP 437 Query: 113 YTNQHGLKDNLKELLGINI 131 L E LG + Sbjct: 438 GRRSFALDALSLEYLGREL 456 >gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 240 Score = 41.1 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 27/114 (23%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113 A + + + D K I H FDI L + + + T + +R + Sbjct: 88 ADDFLEFIADSKL--IIHNAPFDIKFLNHELSLLKRAEIKLLELANTIDTLVMAR-SMFP 144 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 +++ L K + + + QL A D L + ++ Sbjct: 145 GSKYNLDALCKRF---KVDNSSR------------QLHGALKDAALLAEVYVEL 183 >gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34] gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans CH34] Length = 530 Score = 41.1 bits (96), Expect = 0.080, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 57/179 (31%), Gaps = 48/179 (26%) Query: 21 DAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML---VDEK 74 + VD ET G +RDR + +V++ P DG + + + P V L DE Sbjct: 34 PIVFVDLETTGADAQRDRITEIGVVEVGP-DGIQEWDTLVDPLTSIPPFVQGLTGITDEM 92 Query: 75 R--------------EK------IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLT 110 EK + H RFD L F GV R V CT SR Sbjct: 93 VRGQPTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTFRADVLCTLRLSRSL 152 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 +HGL + L+ + A +D L + E Sbjct: 153 FPSVERHGLDALIARFG-----------------LTPKGRHRALADAELLWQFWQKIHE 194 >gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 470 Score = 41.1 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 51/194 (26%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSP----------GDGTVDIIRIAAGQKNAPN 65 A + + DTET GL+P +D + VQ+ G+ ++ A Sbjct: 272 ALSQLCFVVFDTETTGLLPHKDEI--VQIGAVRVVKGRIVEGEQFDTLVNPGIPIPPAST 329 Query: 66 LVGMLVDEKR--------------------EKIFHYGRFDIAVLFYTFGVRV----RPVF 101 V + D + H FD+A L P+ Sbjct: 330 RVHKVSDRMVQDAPDIITAGRQFHHFARDAVIVAHNAPFDMAFLRRHAKRMEVEWDHPIL 389 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 T + S + + H L LGI I + + + A D V Sbjct: 390 DTVLLSAVLFGASETHTLDALCDR-LGIEIPETLRHT--------------ALGDAVATA 434 Query: 162 ALRLQFTEKLQRLG 175 ++ LQ G Sbjct: 435 EALVRMLPMLQARG 448 >gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] Length = 912 Score = 41.1 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 2/92 (2%) Query: 42 VQLSPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 + L+ GD + + G + L L D +K+ H + + ++ Sbjct: 361 IALAGGDDHATFVDLGPGLDAVDEQALADWLADPDAQKVVHEVKGPLLAVWARGWDLAGV 420 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 V T +A+ L L D L + Sbjct: 421 VSDTALAAYLALPGQRSFDLADLAVRYLRREL 452 >gi|326517671|dbj|BAK03754.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 263 Score = 41.1 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 6/115 (5%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 ++ ++QL ++ I P L +L D K+ D +F + VRV Sbjct: 149 KVALMQLCMDKTHCYVMHIIHSGV-PPILKSLLEDSSSVKVGVCIDNDARKMFNDYDVRV 207 Query: 98 RPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDE 148 +P+ T +A+ + L + + + K + +W A LS + Sbjct: 208 QPLMDLST-VANLKLAGPYKRWSLAALTEMITCKELPKPGNIRMGNWEAFVLSKK 261 >gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957] gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957] Length = 960 Score = 41.1 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 26/190 (13%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------- 68 + + +DTET + P +L + LS G I +A + L Sbjct: 365 LLDASELVCIDTETTSIDPMLAQLVGISLSVQPGRACYIPVAHRGPDVSGLDAAAQLSRE 424 Query: 69 --------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119 L DE R K+ + ++D V G+ +R + T + S + ++ N HG+ Sbjct: 425 AVLARMRLWLEDEIRSKVGQHLKYDAHVFANH-GIALRGIAHDTMLQSYVLASHRN-HGM 482 Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + +L + K + L +YAA D L K+ Sbjct: 483 DALAERVLHLKTITYEEVCGKGAAQIGFDEVALDRA-TEYAAEDADITLRLHRALYPKVA 541 Query: 173 RLGRSDLATS 182 + Sbjct: 542 EDDKLRYVYE 551 >gi|189200661|ref|XP_001936667.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983766|gb|EDU49254.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 298 Score = 41.1 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 26/141 (18%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125 L +L K+F R D LF + V + + ++ TR T + + Sbjct: 87 LKTILESPTIPKVFFDVRNDSDALFAHYKVALSCIHDLQVMELATRPMTTGNSRQFLCSL 146 Query: 126 LLGINISKAQQSSD---WSA----------------------DDLSDEQLQYAASDVVHL 160 I + S+D W+A L E Y DVV++ Sbjct: 147 STCIRDNAPLSSTDLAAWTAIKEAGNALFDPKKGGSYSVFETRPLRTEVQDYCVQDVVYM 206 Query: 161 HALRLQFTEKLQRLGRSDLAT 181 L F ++Q+ R D A Sbjct: 207 PLLWDIFEHRIQK-DRMDEAE 226 >gi|170110060|ref|XP_001886236.1| predicted protein [Laccaria bicolor S238N-H82] gi|164638820|gb|EDR03095.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1587 Score = 41.1 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 20/145 (13%) Query: 42 VQLSPGDGTVDIIRIAAGQKNA---PNLVGMLVDEKREKIFHYGRF------------DI 86 +QL+ V + ++ Q+ A PNL+ +L K+ + + D+ Sbjct: 609 IQLAVHKE-VYVFQVTELQEKASAPPNLLSLLSSTHIIKVGYSIQETLLCLANLWSIDDL 667 Query: 87 AVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLKELLGINISKAQQS--SDWSAD 143 + + + ++ ++ + +LG +I+++ SDWSA Sbjct: 668 KSQLKAGSKTPQ-ILDLGVLAKAKGVVSDAKASFITLTGLILGQSINQSNSLALSDWSAI 726 Query: 144 DLSDEQLQYAASDVVHLHALRLQFT 168 LS EQ+ +A D ++ ++ + Sbjct: 727 TLSKEQIDSSALDAFNVFSMWQKLA 751 >gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis HTE831] gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis HTE831] Length = 1428 Score = 41.1 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 13/87 (14%) Query: 62 NAPNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLT 110 +AP + +L D + H FD+ L F PV T +R Sbjct: 475 DAPEVADVLKDFHTWMGNDIL-VAHNASFDMGFLNQGFQRIDYEKASNPVVDTLELARFL 533 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQS 137 H L K L I +++ ++ Sbjct: 534 LPELRNHRLNTLCKH-LDIELTQHHRA 559 >gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144] gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144] Length = 1442 Score = 41.1 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 416 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 474 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 475 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 577 ATAYIFIKMVQQMKELG 593 >gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B'] Length = 865 Score = 41.1 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 10/99 (10%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFC 102 ++ G I A + + + + KI H + D+ + Y + + + +F Sbjct: 329 VADGSNCYFIAANLAQEYDIIAVKNFFEAKNISKILHNSK-DLRHILYRYQINIHGNIFD 387 Query: 103 TKIASRLTRTYTNQH-------GLK-DNLKELLGINISK 133 T IAS L + + G ++ +LLG +K Sbjct: 388 TAIASYLINPLQSDYELSVAATGYDIKHVDQLLGTGKNK 426 >gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046] Length = 1443 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 59/200 (29%), Gaps = 47/200 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG--------------DGTVDII 54 P + I D ET G D L V++ G T II Sbjct: 419 PIDVDLEDATYIVFDVETTGFSNVYDTIIELAAVKIKNGQVIDTFERFSNPHRKLTAKII 478 Query: 55 RIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLF---YTFGVRV-RPVF 101 + + AP L ++ + + H FD+ L+ G+ V P Sbjct: 479 ELTHITDDMLVNAPELSDVIREFHDFIGDGVVVAHNAAFDLGFLYVAYKNAGIEVRHPGI 538 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 T SRL H LK K+ I +++ + A D Sbjct: 539 DTVELSRLVNPGQKSHNLKTLTKKY-NIELTQHHR----------------AIYDTEATG 581 Query: 162 ALRLQFTEKLQRLGRSDLAT 181 L L ++ LG +L Sbjct: 582 ELFLHLLKQAADLGIKNLIE 601 >gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] Length = 875 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 9/126 (7%) Query: 78 IFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 I ++D ++ FG+ + T I + L ++ G+ + K+L K + Sbjct: 377 IGQNLKYDFRIVANNFGIEPPKNYSDTMILAWL-DDPSSSVGMDNLAKKLYNYETIKFES 435 Query: 137 SS----DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRA 191 D+S+ DL +YA+ D FT KL+ ++A + F++ Sbjct: 436 VVKKGEDFSSVDLQSA-SKYASEDAWITLKFYKTFTNKLE-ESMLNIAKNVEFPFILTLF 493 Query: 192 ELDLLG 197 +++ G Sbjct: 494 DMESNG 499 >gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 1454 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 509 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 567 Query: 133 KAQQSSD 139 K ++ D Sbjct: 568 KHHRAVD 574 >gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912] Length = 1428 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 36/153 (23%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD----IIRIAAGQ-------- 60 + + DTET GL R +++++ G VD +I Sbjct: 411 LEDAEFVVFDTETTGLNAREH--TLIEIAAVKVRGGELVDHYTSLIDPGVPISPKIQELT 468 Query: 61 -------KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLF---YTFGVRV--RPVFCT 103 K P L +L + H FD+ L G PV T Sbjct: 469 GITSDMVKGQPGLSEVLEAFRKFAAGAVLVAHNAEFDMGFLQSAARKLGQPPWDHPVLDT 528 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 +R+ H LK ++ + + + Sbjct: 529 LALARVLYPRERNHRLKTLTQKF-NVELVNHHR 560 >gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_27] gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_27] Length = 1449 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562 Query: 133 KAQQSSD 139 K ++ D Sbjct: 563 KHHRAVD 569 >gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_33] gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_33] Length = 1449 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562 Query: 133 KAQQSSD 139 K ++ D Sbjct: 563 KHHRAVD 569 >gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_36A2] gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 3_1_36A2] Length = 1449 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562 Query: 133 KAQQSSD 139 K ++ D Sbjct: 563 KHHRAVD 569 >gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11] Length = 1449 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYKCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562 Query: 133 KAQQSSD 139 K ++ D Sbjct: 563 KHHRAVD 569 >gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074] Length = 897 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 2/79 (2%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRT 112 + + L R KI H + + V G RV V T +A+ L + Sbjct: 368 DPARLDEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTMDTALAAYLVKP 426 Query: 113 YTNQHGLKDNLKELLGINI 131 L E LG + Sbjct: 427 GRRSFALDALSLEYLGREL 445 >gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1] Length = 1449 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562 Query: 133 KAQQSSD 139 K ++ D Sbjct: 563 KHHRAVD 569 >gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13] Length = 1449 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562 Query: 133 KAQQSSD 139 K ++ D Sbjct: 563 KHHRAVD 569 >gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 1454 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 509 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 567 Query: 133 KAQQSSD 139 K ++ D Sbjct: 568 KHHRAVD 574 >gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 1216 Score = 41.1 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562 Query: 133 KAQQSSD 139 K ++ D Sbjct: 563 KHHRAVD 569 >gi|296314226|ref|ZP_06864167.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria polysaccharea ATCC 43768] gi|296839130|gb|EFH23068.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria polysaccharea ATCC 43768] Length = 408 Score = 41.1 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 46/157 (29%), Gaps = 38/157 (24%) Query: 62 NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPVFCTKIASRLTRT 112 +AP + + K I H RFD L + F G+ P C+ SR Sbjct: 28 DAPIFAEIAGELFSVLKGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPALCSVQLSRCLYP 87 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 +H L ++ LGI + + A +DV AL L Sbjct: 88 QFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS---ALCDYLEYSLS 127 Query: 173 RLGRSDLATSCCNF---------LMDRAELDLLGWEN 200 G C L +R L G + Sbjct: 128 EHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 164 >gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302] gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302] Length = 681 Score = 41.1 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 418 EVDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNIIAEFDEFINPGHHLSAFT 474 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA LV +L + + + H FD+ + + +P Sbjct: 475 TELTGITDDHVKNAKPLVQVLKEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKITQP 534 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 535 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 566 >gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476] gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476] Length = 968 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 58/190 (30%), Gaps = 27/190 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-------- 68 A+ A DTET L P + +L L+ G I + + L G Sbjct: 375 AQEQGFFAFDTETTSLDPMQAKLVGFSLALQPGKAAYIPLEHFEGKEDLLKGGRIASQIE 434 Query: 69 ----------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118 +L D KI ++D V+ + +R T + S H Sbjct: 435 TRKALALLKPLLEDSAVLKIGQNIKYDWLVVKQY-DIVIRSFDDTMLLSYALDAGALTHN 493 Query: 119 LKDNLKELLGINIS--KAQQS-----SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + D + L K + ++ DL L YAA D L +L Sbjct: 494 MDDLSERWLEHKPIAYKDLTHNGKKITSFAQVDLKQATL-YAAEDADITLRLWQVLKPQL 552 Query: 172 QRLGRSDLAT 181 G + + Sbjct: 553 VARGMTKIYE 562 >gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related 3'-5'exonuclease [Parvularcula bermudensis HTCC2503] gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Parvularcula bermudensis HTCC2503] Length = 245 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 33/122 (27%), Gaps = 35/122 (28%) Query: 67 VGMLVDEKR-----------EKIFHYGRFDIAVLFYTFGVR--------VRPVFCT-KIA 106 + D + H FD + + + T +IA Sbjct: 67 KPIFKDPAIGQAFYQFCEGAVLVAHNASFDCKFMQHHLDEIGLPWAWGEPGDIVDTLQIA 126 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 + R + L + GI++++ + Q A D L + ++ Sbjct: 127 RK--RFPGSPSSLDALCQRF-GIDLTER------------EAQGHGALLDSRLLAEVYIE 171 Query: 167 FT 168 T Sbjct: 172 LT 173 >gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis FRI909] Length = 1438 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis SK135] gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis SK135] Length = 1438 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11] gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11] Length = 1439 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 550 GVNLEQHHRA 559 >gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188] gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188] Length = 1439 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 550 GVNLEQHHRA 559 >gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6] gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6] Length = 1439 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 550 GVNLEQHHRA 559 >gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96] gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96] Length = 1439 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 550 GVNLEQHHRA 559 >gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5] gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5] Length = 1439 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 550 GVNLEQHHRA 559 >gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3] gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704] gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3] gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704] Length = 1439 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 550 GVNLEQHHRA 559 >gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis] Length = 1439 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 550 GVNLEQHHRA 559 >gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A] gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)] gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis RP62A] gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)] Length = 1436 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 410 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 469 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 571 ATAYIFIKMVQQMKELG 587 >gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU028] gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU045] Length = 1438 Score = 41.1 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus epidermidis VCU144] Length = 1438 Score = 41.1 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012] Length = 1451 Score = 41.1 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2] gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2] Length = 1439 Score = 41.1 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 550 GVNLEQHHRA 559 >gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1] gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1] gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG] gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1] gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1] gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol] gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1] gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG] Length = 1439 Score = 41.1 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 550 GVNLEQHHRA 559 >gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060] gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060] Length = 1442 Score = 41.1 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 416 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 474 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 475 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 577 ATAYIFIKMVQQMKELG 593 >gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109] gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109] gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017] Length = 1451 Score = 41.1 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200] Length = 1440 Score = 41.1 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 492 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 550 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 551 GVNLEQHHRA 560 >gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] Length = 909 Score = 41.1 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 21/78 (26%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 + + + D R K+ H + + V T +A+ L + Sbjct: 380 DTTQLDESDERAFAAWISDPSRPKVMHNAKDALRVFPEHGWEIAGVTMDTALAAYLVKPG 439 Query: 114 TNQHGLKDNLKELLGINI 131 L E L + Sbjct: 440 RRSFALDALSIEYLHREL 457 >gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302] Length = 1451 Score = 41.1 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470] gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470] Length = 1451 Score = 41.1 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|307106303|gb|EFN54549.1| hypothetical protein CHLNCDRAFT_135337 [Chlorella variabilis] Length = 508 Score = 41.1 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 18/98 (18%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFG-------VRVRPVFCTKIASRLTRTYTNQ-- 116 L + K+ D+ + G V P R R + Sbjct: 72 LQALFRSRGCLKLGWGLVHDLRAIAAALGGEGGSCIAVVDPACDLGSMHRFLRHRGARGA 131 Query: 117 --HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 GL ++ LG + K Q LS EQ +Y Sbjct: 132 VDLGLSGLVEAQLGRPLDKQLQ-------PLSAEQRRY 162 >gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512] gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis DAPTO 516] gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712] gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613] gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512] gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis DAPTO 516] Length = 1451 Score = 41.1 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228] gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis ATCC 12228] Length = 1442 Score = 41.1 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 416 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 474 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 475 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 577 ATAYIFIKMVQQMKELG 593 >gi|71417200|ref|XP_810502.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70875040|gb|EAN88651.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 842 Score = 41.1 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 13/107 (12%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIA--SR-LTRTYTNQHG 118 NL +L +++ K+ D L + R+ P C ++A +R L T + G Sbjct: 220 LDNLTSLLANKRVAKVGVGIIGDQEKLQRDYTAFRLCP--CVELAVLARHLFPTAEDLMG 277 Query: 119 LKDN---LKELLGINISKAQ--QSSDWSAD--DLSDEQLQYAASDVV 158 L+ G + K SDW + LS QL+YAA+D Sbjct: 278 LRSLKDFAARFAGRKLKKDILVTCSDWGSSLGALSPLQLEYAAADAE 324 >gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855] gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855] Length = 1451 Score = 41.1 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] Length = 889 Score = 41.1 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 65/206 (31%), Gaps = 45/206 (21%) Query: 21 DAIAVDTETL-----------------GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63 ++ DTET G+ +P + + ++ A Sbjct: 323 SIVSFDTETTNLDVLCAKIVGFSFSLDGINAYY--------APIAHSYLGVPEQISKELA 374 Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR---PVFCTKIASRLTRTYTNQ-HGL 119 + L + K I H ++D+ +L F + + + + + L ++ L Sbjct: 375 LEFINSLFNAKVV-IGHNLKYDLEILHTNFNFTPKSYHNIKDSMLLAWL--YQSDMPCNL 431 Query: 120 KDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 D + I K + ++S + + YA D + L + L Sbjct: 432 DDLMARYFKHTMIAFKDIIKKGE---NFSQLPIENA-FTYACEDAAACYQLFFKINSLLP 487 Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197 + ++A + F+ ++L G Sbjct: 488 KS-LQEVANNVEFPFIQCLVNMELSG 512 >gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322] gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis TUSoD Ef11] gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322] gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis TUSoD Ef11] gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027] Length = 1451 Score = 41.1 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342] Length = 1451 Score = 41.1 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635] gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635] gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630] Length = 1451 Score = 41.1 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8] gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98] gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis PC1.1] gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248] gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134] gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411] gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102] gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200] gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8] gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98] gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis PC1.1] gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411] gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134] gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248] gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102] gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000] gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141] gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244] gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031] gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043] gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312] gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645] gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341] gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346] gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis 62] gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF] gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467] Length = 1451 Score = 41.1 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583] gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22] gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecalis V583] gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22] gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B] gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A] Length = 1451 Score = 41.1 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137] Length = 1451 Score = 41.1 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 244 Score = 41.1 bits (96), Expect = 0.094, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 24/111 (21%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR------VRPVFCT-KIASRLTRTYTNQ 116 P D+ E I H +FD+ + + T IA R + +++ Sbjct: 80 PEFWDFFNDKNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIVDTLSIARR--KHPSSR 137 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + L K GI I + +S A D L + +Q Sbjct: 138 NDLNSLCKRY-GITI--SHRS------------KHGALLDSHLLADVYVQM 173 >gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860] gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860] Length = 1451 Score = 41.1 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127 E + H FD+ L ++G PV T SR + H L K+ Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561 Query: 128 GINISKAQQS 137 G+N+ + ++ Sbjct: 562 GVNLEQHHRA 571 >gi|124512086|ref|XP_001349176.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7] gi|23498944|emb|CAD51022.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7] Length = 1923 Score = 41.1 bits (96), Expect = 0.095, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 19/42 (45%) Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++K Q +W+ LS ++YA DV+ L KL Sbjct: 1874 QVNKECQIINWNFRPLSSSSVEYAILDVLILKKFFYLIQTKL 1915 >gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor] gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor] Length = 992 Score = 41.1 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 47/174 (27%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G D K++H FD V+ G++V Sbjct: 317 FGNGKTCIWVDVLDGGPDVLMEFAPFFEDSSIRKVWHNYSFDSHVIENY-GIKVAGFHAD 375 Query: 103 TKIASRL---TRTYTNQHGLKDNL--KELLGI--------------------NISKA--- 134 T +RL +R + L+ ++G+ I K Sbjct: 376 TMHLARLWDSSRRTDGGYSLEGLTNDHRVMGVVSKELRKIGKRSMKTIFGRKKIKKDGSE 435 Query: 135 -----------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 Q D +L + Y++ D + L KL+R + Sbjct: 436 GKITAIEPVEILQRED---REL---WICYSSLDSMSTLKLYESLKSKLERKPWT 483 >gi|294879932|ref|XP_002768830.1| hypothetical protein Pmar_PMAR000238 [Perkinsus marinus ATCC 50983] gi|239871768|gb|EER01548.1| hypothetical protein Pmar_PMAR000238 [Perkinsus marinus ATCC 50983] Length = 1520 Score = 41.1 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 30/110 (27%) Query: 66 LVGMLVDEKREKIFH------YGRFDIAVLFYTF------------GVRVRPVFCTKIAS 107 L +L K+ + Y +F VL + GV ++P+F Sbjct: 1284 LTSVLCHPNILKVVYGINAANYAKF--VVLQHVLVEDKFSDDVREDGVVIQPLFD----- 1336 Query: 108 RLTRTYTNQHGLKDNLKE-LLGINISKAQQSSDWSADD-LSDEQLQYAAS 155 ++ Y N L ++E L GI + A++ S+W L QL YAAS Sbjct: 1337 -VSAGYPNP--LHVEVRENLAGIRLCVAEEMSNWDRRPFLRYSQLHYAAS 1383 >gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 1454 Score = 41.1 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 509 VAHNAPFDMGFIKRDVKKYLNIDLQSSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 567 Query: 133 KAQQSSD 139 K ++ D Sbjct: 568 KHHRAVD 574 >gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1402 Score = 41.1 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 53/206 (25%) Query: 22 AIAVDTETLGLMPRRDRLCIV--------QLS-------PGDGTVDIIRIAAGQ------ 60 + VD ET G +RDR+ + Q++ +G + +RI+ Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDRFSTFVDPEGKI-PVRISELTGIYQDM 448 Query: 61 -KNAPNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRL 109 AP L+ + H +FDI L + G+ T SR Sbjct: 449 VDKAPKLIDAILEFERFASSSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELSRR 507 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 T + + L + E L + + + A SD + + E Sbjct: 508 LLTDLSSYKLNK-VAEFLNVELRHHHR----------------ADSDAETTAGIFISLLE 550 Query: 170 KLQRLGRSDLATSCCNFLMDRAELDL 195 +L+ G N + A+ DL Sbjct: 551 RLKARG-YKWLK-ELNSIESNAKADL 574 >gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14] Length = 855 Score = 41.1 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 37/159 (23%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL 109 + + + + L D +K++H FD VLF G+ V+ + T +RL Sbjct: 181 IWVDNLDNAEGTLEYFRAFLEDSSLKKVWHNYSFDRHVLFNH-GINVQGLHGDTMHMARL 239 Query: 110 ---TRTYTNQHGLKDNLKELLGI---------------------------NISKAQQSSD 139 R + L+ +LL N++ Q+ +D Sbjct: 240 WNTARFKRGGYSLQALTSDLLHQRKKNMKELFGTPKPRKDGSPGKEKTIPNVADLQRCAD 299 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + + ++Y+ D L KL+ + Sbjct: 300 FRSR-----WIRYSVFDAESTWFLHRVLQHKLELTHWIE 333 >gi|156050591|ref|XP_001591257.1| hypothetical protein SS1G_07883 [Sclerotinia sclerotiorum 1980] gi|154692283|gb|EDN92021.1| hypothetical protein SS1G_07883 [Sclerotinia sclerotiorum 1980 UF-70] Length = 772 Score = 41.1 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHG 118 Q LV + I H D+ L P + T + R + Sbjct: 391 QDIQKRLVKLFHSRSIL-IGHSLDSDLKALK-----LTHPYIIDTAVIYPHPRGPPLKSS 444 Query: 119 LKDNLKELLGINISKAQQSS 138 LK ++ LG I K ++ Sbjct: 445 LKWLAQKYLGKEIQKGHGAT 464 >gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus warneri L37603] gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus warneri L37603] Length = 1438 Score = 41.1 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 69/197 (35%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + D+ L V++ G+ +D I Sbjct: 412 PTDRDLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHEKLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLTDAPEIEDVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+++++ + A D Sbjct: 530 GVIDTLELSRTINTDYGKHGLNFLAKKY-GVDLTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|218512494|ref|ZP_03509334.1| hypothetical protein Retl8_01789 [Rhizobium etli 8C-3] Length = 35 Score = 41.1 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 14/20 (70%), Positives = 16/20 (80%) Query: 188 MDRAELDLLGWENVDIFSHS 207 RA+LDLLGWE DIF+HS Sbjct: 16 PTRAKLDLLGWEEADIFAHS 35 >gi|119481859|ref|XP_001260958.1| exonuclease, putative [Neosartorya fischeri NRRL 181] gi|119409112|gb|EAW19061.1| exonuclease, putative [Neosartorya fischeri NRRL 181] Length = 750 Score = 41.1 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 39/165 (23%) Query: 5 RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60 +V E +I D +A+D E T G R+ +V DG V + + Q Sbjct: 346 QVPEHEIQQGSVTAGRDVLALDCEMCITEGGKSELTRISLV---RWDGEVVLDELVKPQL 402 Query: 61 -------------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 L+ +L + + H D+ L Sbjct: 403 PIIDYLTRFSGITKEKLDSVTTTLADIQQKLLNILT-PRTVLVGHSLNSDLNALK----- 456 Query: 96 RVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 P + T I R + LK ++ LG I K Q D Sbjct: 457 LTHPFIVDTAIIYPHPRGPPLKCSLKWLTQKYLGKEIQKGQTGHD 501 >gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] Length = 910 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 13/101 (12%) Query: 44 LSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP 99 ++ DG I +A + L L D + K H D ++ G+ VR Sbjct: 368 IADADGAALGIDLAEIDPADEKVLAQWLADPEAPKAVH----DAKPAWHALTGRGLEVRG 423 Query: 100 VF-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 V T +A+ L + L D + L + +D Sbjct: 424 VVMDTALAAYLCHPDQRSYDLADLVVRYLHRELP----RTD 460 >gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 193 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 46/140 (32%), Gaps = 34/140 (24%) Query: 20 VDAIAVDTETLGLMPRRDRL---CIVQLSPGDGT-----------------VDI------ 53 +A+D ET GL R DR+ ++ +PG T V I Sbjct: 8 SGFVAIDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPSEAVAIHGITDE 67 Query: 54 -IRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYT-----FGVRVRPVFCTKIA 106 + A G A L L DE+ +FH FD+ L V PVF T Sbjct: 68 MVEGAPGLSEASIALASFLKDEEPM-VFHNPSFDLGFLDANMRAIKGSWNVMPVFDTCGL 126 Query: 107 SRLTRTYTNQHGLKDNLKEL 126 +R + L + Sbjct: 127 ARKAFPGIKGYSLVALARHF 146 >gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 493 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 57/189 (30%), Gaps = 47/189 (24%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQK------ 61 + A +A + +D E G P DR+ + G+G ++ Q+ Sbjct: 9 QLAAAFSAFRRPVVIIDLEATGGNPYTDRITEIAFLRFDGNGVSSYRQLVNPQRNIPEFV 68 Query: 62 ------------NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGV----RVRPV 100 +AP + D + H +FD L + F P Sbjct: 69 SNLTGIDDEMVADAPPFADLSDDLLHRLRGTLLLAHNSKFDYTFLRHEFSRCRLSYAAPT 128 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 CT SR +H L ++ I +S + A +DV+ L Sbjct: 129 LCTVQLSRRLYPQFFKHNLDSIIERH-QIAVSSRHR----------------AMNDVLAL 171 Query: 161 HALRLQFTE 169 L+ T Sbjct: 172 AD-YLELTA 179 >gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC 700633] Length = 1441 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L +PV T SRL + H L K + + Sbjct: 508 VAHNASFDMGFLNTGYEKEGLEKTTQPVIDTLELSRLLHPHLKSHRLNTLAKRY-NVALE 566 Query: 133 KAQQS 137 + ++ Sbjct: 567 QHHRA 571 >gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1] gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1] Length = 1436 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 11/88 (12%) Query: 60 QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRL 109 K+AP++ +L + H FDI L F G PV T +R Sbjct: 480 LKDAPDVEEVLRQFYDWIGDSVLVAHNASFDIGFLNVGFAKIGLGKVTNPVIDTLELARF 539 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQS 137 H L K+ I +++ ++ Sbjct: 540 LYPDLKNHRLNTLCKKF-DIELTQHHRA 566 >gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium sp. AT7] gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium sp. AT7] Length = 1395 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 7/77 (9%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L + + H FD+ L + PV T SR H L Sbjct: 497 LFKEFAGDSIL-VAHNASFDMGFLNTSNAKHNIPDAENPVIDTLELSRFLHPQFKSHRLN 555 Query: 121 DNLKELLGINISKAQQS 137 K+ G+N+ + ++ Sbjct: 556 TLAKKY-GVNLEQHHRA 571 >gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 677 Score = 40.8 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 40/157 (25%) Query: 17 ARYVDAIAVDTETLGLMPRR-DRLCIVQLSPG---DGTVD-------------IIRIAAG 59 R + I DTET GL P + D++ VQ+ +G + +I + Sbjct: 479 LRSLTFIVFDTETTGLQPSQGDQI--VQIGAVRIVNGRILSGESFNRIVNPGRVIPPESI 536 Query: 60 ---------QKNAPNL------VGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPV 100 K+ P L + + H FD+ L FG++ PV Sbjct: 537 KFHGITDDMVKDKPPLGVVLPQFKAFAADAVL-VAHNAAFDLKFLRMNERQFGLKFDNPV 595 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T + S H L LGI+I+ + Sbjct: 596 LDTMMLSNYLDGPETGHSLDAICDR-LGISITDRHTA 631 >gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 913 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 2/79 (2%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRT 112 + + + D R K+ H + + V G RV + T +A+ L + Sbjct: 384 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITMDTALAAYLVKP 442 Query: 113 YTNQHGLKDNLKELLGINI 131 L E L + Sbjct: 443 GRRSFALDALSVEYLHREL 461 >gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122] gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122] Length = 1438 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53 P + + + D ET GL + ++ L V++ G+ +D I Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYNKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470 Query: 54 IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98 I + + AP + +L E +E + H FD+ + FG Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158 V T SR T +HGL K+ G+ +++ + A D Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572 Query: 159 HLHALRLQFTEKLQRLG 175 + ++ ++++ LG Sbjct: 573 ATAYIFIKMVQQMKELG 589 >gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG] gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF] Length = 914 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 9/102 (8%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 + + + L D +R K+ H + + V T + + L + Sbjct: 385 PSSLDEDDERAFADWLGDPERPKVMHDAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGR 444 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 L E LG + AQ+ SD QL + A D Sbjct: 445 RTFALDALSLEYLGRELVPAQE---------SDGQLAFGADD 477 >gi|241727922|ref|XP_002413785.1| conserved hypothetical protein [Ixodes scapularis] gi|215507601|gb|EEC17093.1| conserved hypothetical protein [Ixodes scapularis] Length = 256 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--NLVGMLVDEKREK 77 + +D E L R R+ +V L+ V I + + NL +L K K Sbjct: 36 SKMLGLDAEGLAARS-RGRISMVTLATLWRHVYIFDVKESEALFEEGNLKILLESAKMLK 94 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 + H R + TFGV+VR VF T A Sbjct: 95 VVHDFRNIAETFYNTFGVKVRKVFDTHSA 123 >gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 884 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 2/79 (2%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRT 112 + + + D R K+ H + + V G RV + T +A+ L + Sbjct: 355 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITMDTALAAYLVKP 413 Query: 113 YTNQHGLKDNLKELLGINI 131 L E L + Sbjct: 414 GRRSFALDALSVEYLHREL 432 >gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella adiacens ATCC 49175] gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella adiacens ATCC 49175] Length = 1444 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 46/160 (28%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 P + D ET GL D L V++ G V I + L Sbjct: 417 PQHILLEDATYVVFDVETTGLSAIYDSIIELAAVKMKNG---VVIDKFEEFIDPGHPLSA 473 Query: 69 -------MLVD--------EKREK-----------IFHYGRFDIAVL---FYTFGVR--V 97 + D E+ K + H FD+ L + G+ Sbjct: 474 TTIQLTGITDDMVRGSKSVEQVLKEFHEFSKDCILVAHNASFDMGFLNTGYENVGIERTE 533 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SR+ H L K + + + ++ Sbjct: 534 QPVIDTLELSRMLHPQLKSHRLNTLAKRY-NVALEQHHRA 572 >gi|150020376|ref|YP_001305730.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis BI429] gi|149792897|gb|ABR30345.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis BI429] Length = 184 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 58/195 (29%), Gaps = 73/195 (37%) Query: 25 VDTETLGLMPRR-DRLCIVQLSPGDGTVDIIRIAAG------------------------ 59 +DTET GL P DR+ V I+ I G Sbjct: 10 LDTETTGLNPYFGDRI---------IEVAIVPIYKGKIIESWIYHSLVNPHIKISALSEK 60 Query: 60 --------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLF---YTFGVRVRPV--F 101 ++AP L +L + + + H R D++ L G V Sbjct: 61 IHGISNSEIESAPGLEKILDNIRAYAKDTIFVMHNARMDLSFLDIATKEVGQFPINVRYI 120 Query: 102 CTKIASRLTRTYTNQHGLKDNLKEL-LGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 T S + Y + L+ ++E G + + A D + Sbjct: 121 DTLEISLIL--YGKKRSLESLVREFKFGEKVP--HR----------------ALGDAILT 160 Query: 161 HALRLQFTEKLQRLG 175 + L+ +EK+ L Sbjct: 161 AKVFLKLSEKIANLN 175 >gi|57900570|dbj|BAD87022.1| hypothetical protein [Oryza sativa Japonica Group] Length = 327 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGV 95 + ++Q+ G + +I L L D + + H D+ L + + Sbjct: 191 VAVLQICVG-RRCLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHD---DVDKLREHYDL 246 Query: 96 RVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 V +A++ GL+ + E++ + + K + S W + L+ +Q+ Sbjct: 247 EVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVM 306 Query: 152 YAASD 156 YA +D Sbjct: 307 YACAD 311 >gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] Length = 687 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101 + DG V++ I AG L + D + FH FD VL Y PV Sbjct: 36 AINDGPVNVWDITAGVGIPHGLYEAIADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK---------------------AQQSSDW 140 T + + L G L E+LG+ K + + Sbjct: 96 DTMVQA-LAHGLPGSLG---ELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA-- 149 Query: 141 SADDLSDEQ---LQYAASDVVHLHALRLQFTE------KLQRLGRSDLATS---CCNFLM 188 ++ +E + YA D+ + + + + +L R C + + Sbjct: 150 TSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVEL 209 Query: 189 DRAELD 194 RA +D Sbjct: 210 ARAAID 215 >gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10] gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10] Length = 896 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 27/151 (17%) Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLK 120 L + + EK H D+ L+ G+ + +F T IA+ + + + + Sbjct: 376 ELREIFESKDIEKYGH----DLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRSTYTIS 431 Query: 121 DNLKELLGINI-------SKA----QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 + ++ L +I K +Q D +S ++ AA + ++ L + Sbjct: 432 ELSEDKLKQSITPVEILYDKHGKRLEQGQD-----VSSSEVCAAAVNAIY--GLTQKLRP 484 Query: 170 KLQRLGRSDL-ATSCCNFLMDRAELDLLGWE 199 ++ G+ +L + A ++L G++ Sbjct: 485 IIRDNGQDELYYKIELPLVEVLANMELRGFK 515 >gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4] gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4] Length = 1446 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 7/77 (9%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 L + + H FD+ L + PV T SR H L Sbjct: 497 LFKEFAGDHIL-VAHNASFDMGFLNTSNAKHNIPDATNPVIDTLELSRFLHPQYKSHRLN 555 Query: 121 DNLKELLGINISKAQQS 137 K+ GIN+ + ++ Sbjct: 556 TLAKKY-GINLEQHHRA 571 >gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 905 Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 2/79 (2%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRT 112 + + + D R K+ H + + V G RV + T +A+ L + Sbjct: 376 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITMDTALAAYLVKP 434 Query: 113 YTNQHGLKDNLKELLGINI 131 L E L + Sbjct: 435 GRRSFALDALSVEYLHREL 453 >gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171] gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171] Length = 687 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101 + DG V++ I AG L + D + FH FD VL Y PV Sbjct: 36 AINDGPVNVWDITAGGGIPHGLYEAIADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK---------------------AQQSSDW 140 T + + L G L E+LG+ K + + Sbjct: 96 DTMVQA-LAHGLPGSLG---ELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA-- 149 Query: 141 SADDLSDEQ---LQYAASDVVHLHALRLQFTE------KLQRLGRSDLATS---CCNFLM 188 ++ +E + YA D+ + + + + +L R C + + Sbjct: 150 TSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVEL 209 Query: 189 DRAELD 194 RA +D Sbjct: 210 ARAAID 215 >gi|313895591|ref|ZP_07829147.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975717|gb|EFR41176.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 642 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 20/118 (16%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTR------TYTNQHG 118 L +L + K+ H F+ + + Y G+ ++ PV+ T A+++T N+ G Sbjct: 86 LADLLANPHITKVAHNIAFE-SSMAYARGIVIQPPVYDTIAAAQMTSRSAYEFRRLNESG 144 Query: 119 LKDNLKELLGINISKAQQSS-----DWSADDLS---DEQLQYAASDVVHLHALRLQFT 168 LK ELL ++ +++ D +L E ++Y A+D L F Sbjct: 145 LKHLAGELLEESLPTFAETTGGKHFD----ELPAQDKETVRYGAADADFSLRLYHTFN 198 >gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1] gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1] Length = 956 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 19/117 (16%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 AP L + + H FD+ +L +P F T + L T + L Sbjct: 74 APRFAAFLKNYPL--VGHNVEFDLRMLRAQGMRLPQPAFDTFELATLLMPRTPAYRLSAL 131 Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179 LGI+ +A LSD DV + L +++ L DL Sbjct: 132 AAT-LGIHHDEAH-------RALSDA-------DVT--RQIFLYLLRRIEALPLDDL 171 >gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1] gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1] Length = 618 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 55/190 (28%), Gaps = 37/190 (19%) Query: 17 ARYVDAIAVDTETLGLMPRR---DRLCIVQLSPGDGTVDIIRIAAG-QKNAPNLVGMLVD 72 A +AVDTET GL L + Q + + I G + + V Sbjct: 35 AETRTPVAVDTETCGLKIYAWGPGFLRLAQFGN-ETEAWALPIEHGPEYVEAAAWALRVL 93 Query: 73 EKREKIFHY-GRFDI----AVLFYTFGVRVRPVFCTKIASRLTRT-----YTNQHGLKDN 122 H FD L V V T+I ++L GLK N Sbjct: 94 PDLT--GHNWSGFDALVSDEHLGVPLEVTCAKVTDTQILAKLVDPRQQMEGGIGSGLKAN 151 Query: 123 LKELLG----------------INISKAQQSSDWSADDLS-DEQLQYAASDVVHLHALRL 165 + + + + + L L+Y DV+ LR Sbjct: 152 SARYIDPTAPDTQDGLKAVFKSLKLKITEGFA---KIPLDHPTYLEYGLLDVILTSRLRP 208 Query: 166 QFTEKLQRLG 175 + L +LG Sbjct: 209 RLEATLAKLG 218 >gi|195021841|ref|XP_001985471.1| GH17078 [Drosophila grimshawi] gi|193898953|gb|EDV97819.1| GH17078 [Drosophila grimshawi] Length = 276 Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 35 RRDRLC---IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR--FDIAVL 89 R C ++ ++ + T + + A L +L E KI HY D+ L Sbjct: 78 FYGRHCNASVIVIATANNT-YVFDLKAMGAIFSELSKLLEAECPRKIMHYSHRICDL--L 134 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS-------KAQQSS--DW 140 + +R+ + T +A + R + L++ + ++ S K+ S ++ Sbjct: 135 LHQHKLRINGISDTFVAWCVARQDRSHCTLQEAISLTFDLHPSELTCDEIKSVTESVRNF 194 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQF 167 +A LS QLQY + H L Sbjct: 195 TARPLSRGQLQYLGKIAILQHKLHDTL 221 >gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] Length = 894 Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122 L +L DE I H + +I + + + + + F T + L + + LKD Sbjct: 371 SPLKDILEDEHIRIIGHDLKKEIIHFY-PYEIHIANLYFDTMVGEYLLNPAKSSYLLKDL 429 Query: 123 LKELLGINI 131 E LG I Sbjct: 430 ALEYLGEEI 438 >gi|294929618|ref|XP_002779292.1| hypothetical protein Pmar_PMAR020066 [Perkinsus marinus ATCC 50983] gi|239888355|gb|EER11087.1| hypothetical protein Pmar_PMAR020066 [Perkinsus marinus ATCC 50983] Length = 1623 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 26/108 (24%) Query: 66 LVGMLVDEKREKIFH---YGRF-DIAVLFYTF------------GVRVRPVFCTKIASRL 109 L +L K+ + + + VL + GV ++P+F + Sbjct: 1308 LTSVLCHPNILKVVYGINAANYAKLVVLQHVLVEEKFSDDVREDGVVIQPLFD------V 1361 Query: 110 TRTYTNQHGLKDNLKE-LLGINISKAQQSSDWSADD-LSDEQLQYAAS 155 + Y N L ++E L GI + A++ S+W L QL YAAS Sbjct: 1362 SAGYPNP--LHVEVRENLAGIRLCVAEEMSNWDRRPFLRYSQLHYAAS 1407 >gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010] gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010] Length = 488 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 53/190 (27%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVD---------IIRIAAGQK 61 + +A + +D ET G RDRL ++++ DG V + I Sbjct: 3 DLSAFPPSMVILDCETTGGRASRDRLTEIALIEV--EDGHVVKRWQTLLNPLRPIPPWIT 60 Query: 62 -----------NAPNLVGMLVDE------KREKIFHYGRFDIAVLFYTFG----VRVRPV 100 +AP + DE + + H RFD + L +F Sbjct: 61 RLTGITDATVADAPTFDEI-ADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNKT 119 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 C+ SR HGL ++ LG+ I + A +D L Sbjct: 120 LCSVKLSRQLFPEHRSHGLDRIIER-LGLTIDNRHR----------------AMADTEVL 162 Query: 161 HALRLQFTEK 170 A + + Sbjct: 163 LAFFEHISAQ 172 >gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1] gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1] gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ST-III] gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Lactobacillus plantarum WCFS1] gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1] gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1437 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 36/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIRIAAGQKN 62 A + + DTET GL DR +++LS I + Sbjct: 412 DAHVDLKESTYVIFDTETTGLSAIYDR--VIELSAVKMVKGNVVDQFEEFIDPGFHLSET 469 Query: 63 APNLVGMLVD--------EKREKIF-----------HYGRFDIAVL-----FYTFGVRVR 98 NL + D E+ K+F H FDI + + G Sbjct: 470 TTNLTSITDDMVRGSKSEEEVFKLFREFYGDAIVVGHNVTFDIGFMNTGYARHHMGPITN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 P+ T +R + L K+ +N+ ++ Sbjct: 530 PIIDTLTLARWLYPNLRGYRLNTLAKKF-NVNLEHHHRA 567 >gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120] gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120] Length = 977 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 52/171 (30%), Gaps = 25/171 (14%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAG-------QKNAPNLVGML 70 +A DTET L PR +V + I +A L +L Sbjct: 387 PVAWDTETSALEPRDA--ALVGIGCCWGTETDASAYIPLAHTKGENLNQDIVLAALRPIL 444 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 K F +FD V VF +AS + T H L D + LG+ Sbjct: 445 ESADYPKTFQNAKFDRLVFLVQGINLTGVVFDPMLASYVLNPDT-SHNLTDLTQRYLGLT 503 Query: 131 I-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 I K + +D + Y V L + E+L + Sbjct: 504 IQNYVDLVPKGKTIADINI----SAVANYCCLQVYATFQLVAKLREELAKT 550 >gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010] Length = 687 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101 + DG V++ I AG L + D + FH FD VL Y PV Sbjct: 36 AINDGPVNVWDITAGGGIPHGLYEAIADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK---------------------AQQSSDW 140 T + + L G L E+LG+ K + + Sbjct: 96 DTMVQA-LAHGLPGSLG---ELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA-- 149 Query: 141 SADDLSDEQ---LQYAASDVVHLHALRLQFTE------KLQRLGRSDLATS---CCNFLM 188 ++ +E + YA D+ + + + + +L R C + + Sbjct: 150 TSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVEL 209 Query: 189 DRAELD 194 RA +D Sbjct: 210 ARAAID 215 >gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083] Length = 694 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 24/78 (30%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 + + V L D +R K+ H + + V T +A+ L + Sbjct: 164 DPSELDEADERAWVAWLADAERPKVLHNAKGAMRVFAEHDWSVAGVSMDTALAAYLVKPG 223 Query: 114 TNQHGLKDNLKELLGINI 131 L E LG + Sbjct: 224 RRSFDLDALSLEYLGREL 241 >gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] Length = 1027 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 14/140 (10%) Query: 43 QLSPGDGTVD--IIRIAAGQKNA-PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 Q GDG + G ++A L +L K+ +F AVL G+ +R Sbjct: 475 QAGDGDGLFAAGLAPDQLGTRDALDALKPVLESAGIAKVGFAIKF-AAVLLAQHGLTLRN 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYA 153 + ++ S HGL + LG + + + + + +Q+ YA Sbjct: 534 IDDPQLMSYALDAGRGSHGLDALSESNLGHTLHTLTELTGTGKNKIGLDQVGIDRATAYA 593 Query: 154 A--SDVVHLHALRLQFTEKL 171 A +DV L +L Sbjct: 594 AERADVS--LRLARVLKPRL 611 >gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M] gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M] Length = 1571 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 59/200 (29%), Gaps = 55/200 (27%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIR--- 55 E ++ + + + D ET GL RD++ ++++ G+ I Sbjct: 467 EDNLEKDFVLKEATYVVFDLETTGLSNVRDKI--IEIAGVKIKKGNKIGEFQKFIDPQQK 524 Query: 56 IAAGQKNAPNLVGMLV----------------DEKREKIFHYGRFDIAVLFYTFG----- 94 + + N+ ++ + + H FDI L Sbjct: 525 LTKTITDITNITDEMLQGQQTIDQVLPQFLAFAKDCVLVAHNASFDINFLKEKAKELKIS 584 Query: 95 VRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDLSDEQLQY 152 + +P+ T S+ R ++N L + + + Sbjct: 585 LEPQPIIDTMALSQ--RYFSNLLKYFSLKRLATFFKVKLEDHHR---------------- 626 Query: 153 AASDVVHLHALRLQFTEKLQ 172 A +D + ++ ++L Sbjct: 627 ALADATATAEIFIKMIDQLA 646 >gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma australiense] gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma australiense] Length = 1530 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 34/165 (20%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRL------------------CIV--QLSPG 47 E ++ + + + D ET G +D++ ++ Q Sbjct: 436 EDNLTQDFNLKEATYVVFDLETTGFSSTKDKIIEIAGVKIKHGKKIQEFQALINPQEKLS 495 Query: 48 DGTVDIIRIAAGQKNAPN-LVGMLVD-----EKREKIFHYGRFDIAVLF---YTFGV--R 96 ++I I N + +L D E + H FDI L G+ + Sbjct: 496 QTIINITNITDDMLEGKNTIDQVLPDFLNFIENCILVAHNATFDITFLKEKIKELGIAYK 555 Query: 97 VRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISKAQQS-SD 139 +PV T ++ R + LK + + + + ++ SD Sbjct: 556 PQPVIDTMTLSQRFFSEFLKYFSLKRL-ATVFKVKMEEHHRALSD 599 >gi|333027886|ref|ZP_08455950.1| putative DNA polymerase I [Streptomyces sp. Tu6071] gi|332747738|gb|EGJ78179.1| putative DNA polymerase I [Streptomyces sp. Tu6071] Length = 914 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 9/102 (8%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 + + + L D +R K+ H + + V T +++ L + Sbjct: 385 PSSLDEDDERAFADWLGDPERPKVMHDAKGLMRVFGEHGMTVAGVAMDTALSAYLVKPGR 444 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 L E LG + AQ+ SD QL + A D Sbjct: 445 RTFALDALSLEYLGRELVPAQE---------SDGQLAFGADD 477 >gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605] gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605] Length = 687 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 7/92 (7%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101 + DG V++ I AG L + D + FH FD VL Y PV Sbjct: 36 AINDGPVNVWDITAGGGIPHGLYEAIADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 T + + L G L E+LG+ K Sbjct: 96 DTMVQA-LAHGLPGSLG---ELCEILGVPQDK 123 >gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] Length = 913 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 41/208 (19%) Query: 23 IAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRI----------AAGQKNAPNLV 67 + D E+ GL + +L C G + + Q+ + Sbjct: 347 VGFDCESDGLDLQEAQLVGFSFC----FDGK-NAYYVPVGHRYLGVGNQLNLQEAKSAIS 401 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H +FD ++++ T G+ + ++ + I S L + GL + + Sbjct: 402 RIFTHPLI---GHNLKFDFSLIYRTLGLEHIGKIYDSMILSWLYDSIAP-VGLDKQMLKW 457 Query: 127 LGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR--- 176 + K + S + ++ Q YAA D L + ++ + Sbjct: 458 FNHTMISFDSVVPKGENFS--QVNIITATQ--YAAEDAAATFKLYHRLEDEFHKREWGGI 513 Query: 177 SDLATS-CCNFLMDRAELDLLGWENVDI 203 +LA + F+ +++L G VDI Sbjct: 514 LELAQNLEYPFIKVLMDMELEGI-RVDI 540 >gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824] gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824] gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018] Length = 871 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 35/183 (19%) Query: 23 IAVDTETLG--LMPRRDRLCIVQLSPGDGTVDIIRIAAG--QKNAPNLVGMLVDEKREKI 78 I +DT + VD+ +I + +L ++K KI Sbjct: 337 IYIDTIFMKVEEKTY--------------IVDLKKIIEQNREDVLKDLKEFFENKKIAKI 382 Query: 79 FHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 H + VL G+++ + F T IA L ++ LKD +E+L ++++ Sbjct: 383 IHDSKNMYTVLMKN-GIKIENLAFDTAIAEYLINPSKKEYNLKDAAEEMLLLDLTGE--- 438 Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRAELDLL 196 D ++ +V + + + +K++ +L + + ++ Sbjct: 439 ---------DNDIK--IKEVYVMDKIYNKLKDKIKEYDMDELYYKVELPLIEVLSSMESE 487 Query: 197 GWE 199 G++ Sbjct: 488 GFK 490 >gi|71002294|ref|XP_755828.1| exonuclease [Aspergillus fumigatus Af293] gi|66853466|gb|EAL93790.1| exonuclease, putative [Aspergillus fumigatus Af293] gi|159129885|gb|EDP54999.1| exonuclease, putative [Aspergillus fumigatus A1163] Length = 750 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 39/165 (23%) Query: 5 RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60 +V E +I D +A+D E T G R+ +V DG V + + Q Sbjct: 346 QVPEHEIQQGSVTAGRDILALDCEMCITEGGKSELTRISLV---RWDGEVVLDELVKPQL 402 Query: 61 -------------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 L+ +L + + H D+ L Sbjct: 403 PIIDYLTRFSGITKEKLDSVTTTLADIQQKLLNILT-PRTVLVGHSLNSDLNALK----- 456 Query: 96 RVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 P + T I R + LK ++ LG I K Q D Sbjct: 457 LTHPFIVDTAIIYPHPRGPPLKCSLKWLTQKYLGKEIQKGQTGHD 501 >gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM 2782] Length = 1433 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 35/151 (23%) Query: 21 DAIAVDTETLGLMPRRDRLCIV--------QLSPGDGTVD---------IIRIAAGQKN- 62 D + D ET GL P +D++ + Q+ I+++ + Sbjct: 421 DFVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITDDM 480 Query: 63 ---APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRV----RPVFCTKIASRLT 110 AP + +L + + + H FD+ + + P T L Sbjct: 481 VKDAPPVEQVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMGEKVKNPYIDTL---ELC 537 Query: 111 RTYTNQHG-LK-DNLKELLGINISKAQQSSD 139 R + G K + + + L I + ++ D Sbjct: 538 RKMFPELGRYKLNIVAKHLKIELENHHRAVD 568 >gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] Length = 687 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 7/92 (7%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101 + DG V++ I AG L + D + FH FD VL Y PV Sbjct: 36 AINDGPVNVWDITAGGGIPHGLYEAIADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 T + + L G L E+LG+ K Sbjct: 96 DTMVQA-LAHGLPGSLG---ELCEILGVPQDK 123 >gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 778 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 57/164 (34%), Gaps = 39/164 (23%) Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRVR-PVFCTKIASRLTRTY 113 QK N DE K+ FDI VLF G+ + P + L Sbjct: 250 PDQKFVDNFKKYFEDENINKV----SFDIKEDIVLFNKLGIEINFPYDDIMLMHYLIDPS 305 Query: 114 TNQHGLKDNLKELLGINI-----------SKAQQSSDWSADDLSDEQL-QY------AAS 155 + + LK + L + +K S DLS+++L +Y A Sbjct: 306 RSSYDLKTFSQAFLKYEVLNEEDLLGKGRNKK------SYKDLSEKELGKYLSSIINAIE 359 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATSC-CNFLMDRAELDLLGW 198 D + T+KL+ L +L C A++++ G+ Sbjct: 360 DSL------DILTDKLKELSMYELYKDCEIKLSKVLADMEITGF 397 >gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301] gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301] Length = 214 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 35/120 (29%), Gaps = 34/120 (28%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIV------------Q----LSPGDGTVDIIRIAAGQK 61 R I VDTET GL+P DR+ + Q + A Sbjct: 12 RKKRVIVVDTETTGLLPY-DRIVTIGAVKIEGDDFLHQSLHLIFDPRKDSHPQAEAVHGY 70 Query: 62 N--APNLVGMLVD--EKREKIF--------HYGRFDIAVLFYTF-----GVRVRPVFCTK 104 + + D K F H FD+ + F + PVFCT Sbjct: 71 DNWMTRYQDLFSDLAAPIRKWFDWADEIVAHNADFDMRYVQREFRKAEVDMLPHPVFCTM 130 >gi|167462371|ref|ZP_02327460.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase domains [Paenibacillus larvae subsp. larvae BRL-230010] Length = 573 Score = 40.4 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 13/115 (11%) Query: 70 LVDEKREKIFH--YGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 L K FH R+D+ V G +R V+ T A L + ++GLK +++ Sbjct: 205 LAQPTHGKTFHMGSARYDLHVARND-GYEIRGCVWDTLDAMHLLNEHEEKYGLKKIVEKY 263 Query: 127 LGINIS---KAQQSSD-WSAD---DLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173 G D + S E + YA DV++ L E +++ Sbjct: 264 -GKYFDIPGPIYTFEDMFGNRSPAPFSVELVGIYAIKDVLYGWKLFEWQVEMMRK 317 >gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 928 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 30/88 (34%) Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 V + A + L L D +R K H + + L V T +A+ Sbjct: 389 DAVFVDPTALDPADTEALADFLADPRRPKAVHEYKGALLALGAHGWELGGVVSDTALAAY 448 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQ 136 L + + L D ++ LG + + Sbjct: 449 LVQPGQRRFDLADLCRKYLGRELEEDSS 476 >gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603] gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603] Length = 893 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 31/87 (35%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104 + + V + ++ L L+D KI H + L G + T+ Sbjct: 352 ATPESAVVVTLDELSDADSVALRQWLMDPHYPKIVHSAKEAWHALHSFSGGVKGVIADTE 411 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINI 131 +A+ L +GL+D + +I Sbjct: 412 LAAYLAFPDQRSYGLEDLSIRYVSRDI 438 >gi|289724909|gb|ADD18385.1| putative 3'-5' exonuclease [Glossina morsitans morsitans] Length = 224 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 + ++ ++ V I I K P+ +L + K+ H + L + V + Sbjct: 67 KTSVIAIATA-TNVYIFDILYLDKVYPDFGRILEAKYPRKVVHNSHKIVDHLQHRQNVNL 125 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI---SKAQQSSD-WS--ADDLSDEQLQ 151 +F T +A L L++ +++ L + + + ++ ++ L + L Sbjct: 126 SGIFDTFVAYCLVSDDKTHRSLEETIQDTLNMPLTYFETEETRTNPFTPYKRPLMNAWLS 185 Query: 152 YAASDVVHLHALRLQFTEKLQR 173 L A + KL Sbjct: 186 --------LIAKKALLQLKLAE 199 >gi|302848759|ref|XP_002955911.1| hypothetical protein VOLCADRAFT_96821 [Volvox carteri f. nagariensis] gi|300258879|gb|EFJ43112.1| hypothetical protein VOLCADRAFT_96821 [Volvox carteri f. nagariensis] Length = 1210 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 6/59 (10%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103 GDG A G +L G+L D K+ H + L G + P+ T Sbjct: 987 CTGDG-----PEAIGGVLLTSLRGLLEDPGVAKVVHGCEQ-VRPLELASGAAIAPLLDT 1039 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 14/30 (46%) Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTE 169 W + LSD Q+ AA V HL L E Sbjct: 1136 WLSRPLSDGQVLVAAQSVRHLPELWSALCE 1165 >gi|238608456|ref|XP_002397237.1| hypothetical protein MPER_02373 [Moniliophthora perniciosa FA553] gi|215471291|gb|EEB98167.1| hypothetical protein MPER_02373 [Moniliophthora perniciosa FA553] Length = 183 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 2/96 (2%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGML 70 A + +D E L + L +V + + + I L +L Sbjct: 23 AIADLGASRTLILDCEGRDLGTQGGALSLVSVRVTEPIPKTYVFDILRLHGYLEPLWALL 82 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 + K+ GR D ++Y +GV + ++A Sbjct: 83 SSMYKRKVVFDGRQDFCAMWYDYGVPLPNTIDLQLA 118 >gi|67484502|ref|XP_657471.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|56474725|gb|EAL52082.1| hypothetical protein EHI_148670 [Entamoeba histolytica HM-1:IMSS] Length = 279 Score = 40.4 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 14/168 (8%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80 + + D E + P +QLS ++ + ++ LV +L ++ KI Sbjct: 28 NYVGFDVEYVDKTP-----ATIQLSSP-TEAFVLHVFHYKELPKTLVQLLENDGIIKIGV 81 Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 + D+ + + + + L + G+ ++LLG K + W Sbjct: 82 GVKDDLKKIDDKYKTHCQGGLDIGWTAYLIGAVSEYRGIDYLGEKLLGEK--KLGGFATW 139 Query: 141 SADDLSDEQLQYAASDVVHLHALRLQF------TEKLQRLGRSDLATS 182 L +Q+ YAA D + + T++ +R +D Sbjct: 140 GIGRLEKKQIDYAAKDAWIGVCVAEKIYNESLTTKEKKRCNITDWVKD 187 >gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1 BON] gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1 BON] Length = 296 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 37/143 (25%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIR----------IAAGQK 61 + +A+D ET GL P D++ V+++ T I I Sbjct: 121 EFVAIDLETTGLNPAIDKI--VEIAAVKFKYGEIIDSYTTLINPGIHIPSSASKINHITD 178 Query: 62 N----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVR----VRPVFCTKIAS 107 AP+L +L + + + H FD+ L Y P T Sbjct: 179 ETVHGAPDLSEVLPNLLNFIGDSIL-VMHNASFDLKFLKYHAAKLGYDISNPFIDTLPTC 237 Query: 108 RLTRTYTNQHGLKDNLKELLGIN 130 + T + L + L I+ Sbjct: 238 KKLFTDFENYQLAT-VANYLKIS 259 >gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius HKU10-03] Length = 1435 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 54/197 (27%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 P+ + + D ET GL + D+ L V++ G+ I + L Sbjct: 410 PSNIMLQDATYVVFDVETTGLSNQYDKIIELAAVKVKNGE---IIDKFERFSNPHEKLTE 466 Query: 69 -----------MLVD-EKREKIF--------------HYGRFDIAVL-----FYTFGVRV 97 ML D + E++ H FD+ + FG Sbjct: 467 TIKNLTHITDDMLKDAPEIEEVLTEFKAWVGDAIFVAHNASFDMGFIDTGYERLGFGPST 526 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 V T SR T +HGL K+ G+ +++ + A D Sbjct: 527 NAVIDTLELSRTINTSYGKHGLNFLAKKY-GVELTQHHR----------------AIYDT 569 Query: 158 VHLHALRLQFTEKLQRL 174 + ++ +L+ L Sbjct: 570 EATAYIFVKMLAQLKAL 586 >gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] Length = 895 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 47/131 (35%), Gaps = 17/131 (12%) Query: 78 IFHYGRFDIAVLFYTFGVRVR---PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--- 131 I H ++D+ +L F ++ + + + + L ++ L +K+ + Sbjct: 395 IGHNLKYDLEILKTNFDFVLQDFSKIRDSMLLAWLLQS-DALCNLDFLMKKYFNHEMIHY 453 Query: 132 ----SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186 K + S L +YA+ D + L + L ++A S F Sbjct: 454 KDIVHKKENFS----QILIQYACEYASEDAAACYQLYFKLKG-LVDERLMEIAKSVEFPF 508 Query: 187 LMDRAELDLLG 197 + ++L+G Sbjct: 509 IQSLMNMELIG 519 >gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG] gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG] Length = 256 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 56/201 (27%), Gaps = 61/201 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D VD I Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R + L + LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRSNLDALCER-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFTEKLQRLGRSDLATSC 183 + L T G+++L Sbjct: 172 VYLMMTG-----GQTNLFDEE 187 >gi|242044354|ref|XP_002460048.1| hypothetical protein SORBIDRAFT_02g021840 [Sorghum bicolor] gi|241923425|gb|EER96569.1| hypothetical protein SORBIDRAFT_02g021840 [Sorghum bicolor] Length = 309 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 11/154 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHY 81 + +DTE + ++ ++Q+ + + ++ G +L V E + Sbjct: 112 VGLDTEHA-EYEGKKKIALIQICV-NTRCLLFQVGITGGCIPDDLKSFFVRENHVFVGVA 169 Query: 82 GRFDIAVLFYTFGVRVRPVFCTKIASRLT--RTYTNQHGLKDNLKELLGINISK---AQQ 136 D+ +L + + + + N L ELLG+ K + Sbjct: 170 ITNDMDLLRQHHNIELSKKVELQAMVPFVIQGKWCNVPSLASIGLELLGVVAEKNNPKLR 229 Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 DW L+ EQ++Y D + + + Sbjct: 230 YKDWHKKSLAHEQIKY---DAFVSYKVWEMLQSQ 260 >gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] Length = 885 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 14/131 (10%) Query: 3 TIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 ++ H+ D + AA R V+++ V E +G P + V L+ D + ++ +A Q Sbjct: 303 SVAAHDEDALSALAAGLRSVESVYV--EVIGENPHQSETIAVALATAD-VIFVVPMAELQ 359 Query: 61 KNAPNLV-GMLVDEKREKIFHYGRFDI---AVLFYTFGVRVRPV-FCTKIASRLTRTYTN 115 +A V L D EK FD+ + G+ ++ + F ++A+ L + Sbjct: 360 ASALGFVREWLADADMEK----AGFDLHRTELSLAWHGIALKGISFDIQLAAYLLDPTDS 415 Query: 116 QHGLKDNLKEL 126 + + Sbjct: 416 TQSISGLCGKY 426 >gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus Py2] Length = 719 Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 23/117 (19%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRV-RPVFCTKIASRLTRTYTNQHG 118 P D + H FD+ L GVR +PV T + + + + HG Sbjct: 601 LPAFHAFAADT--VLVGHNVAFDMRFLTLKENASGVRFDQPVLDTLLLAAIVHPGEDSHG 658 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L+ LGI +S A D + + L+ L++ G Sbjct: 659 LEAMAAR-LGIAVSGRHT----------------ALGDALATAEIFLKLLPLLRQRG 698 >gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group] Length = 1028 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 48/173 (27%), Gaps = 47/173 (27%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + + + G+ D +K++H FD V+ G++V Sbjct: 311 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDNHVIEN-CGIKVAGFHAD 369 Query: 103 TKIASRL---TRTYTNQHGLKDNL---------------------KELLG---------- 128 T +RL +R + L+ K + G Sbjct: 370 TMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKKVRKNGSE 429 Query: 129 -----INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 I + Q D +L + Y++ D + L KL+ Sbjct: 430 GKTISIEPVEKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAKEW 476 >gi|39941984|ref|XP_360529.1| hypothetical protein MGG_10841 [Magnaporthe oryzae 70-15] gi|145021652|gb|EDK05781.1| hypothetical protein MGG_10841 [Magnaporthe oryzae 70-15] Length = 720 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 46/161 (28%), Gaps = 35/161 (21%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIAAG---- 59 V E DI + A+D E P L + V + DG V + + Sbjct: 297 VPEADIQQGSITAGREIFAIDCEMCRTGPTNHDLSLTRVTILSWDGEVVMDELVKPSLPI 356 Query: 60 ------------------QKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 P+ L+ +L + H D+ L Sbjct: 357 LDYLTQFSGITKEMLEPVTTTLPDIQKRLLELLTPRSIL-VGHSLDSDMKALQ-----MA 410 Query: 98 RP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 P V T I + +H LK + LG + K + S Sbjct: 411 HPFVVDTSILFPNPSSPNGKHSLKHLASKYLGRQVQKDEGS 451 >gi|301120167|ref|XP_002907811.1| glycoside hydrolase-like protein [Phytophthora infestans T30-4] gi|262106323|gb|EEY64375.1| glycoside hydrolase-like protein [Phytophthora infestans T30-4] Length = 165 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 13/88 (14%) Query: 4 IRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 I + + R + VDTE P R + G+ + G+ Sbjct: 31 IHSEQEEQEHAEYLREQKVVGVDTEA---RPDFRPLKG----ATGNPV-----LQRGKPL 78 Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLF 90 P L + VD K+ H D L Sbjct: 79 PPVLQELFVDPDVLKVGHSLSDDFRQLK 106 >gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C] gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389] gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C] gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389] Length = 229 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 36/153 (23%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113 A + + + D K + H FD+ L + + + T + +R + Sbjct: 77 ADDFLEFIADSKL--VIHNAPFDVKFLNHELSLLKRAEIKLLELEHAIDTLVMAR-SMFP 133 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 +++ L K D S QL A D L + ++ T Sbjct: 134 GSKYSLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVELTG---- 174 Query: 174 LGRSDLATSCCNFLMDRAELDLLGWENVDIFSH 206 GR S L A+++ L + +D +H Sbjct: 175 -GR----QSAFKMLDKAAKINNLSYNRLDSQAH 202 >gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] Length = 896 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 23/193 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA------GQKNAPNLVGMLVDEKRE 76 ++ DTET L + +L + + + I Q + ++ R Sbjct: 330 VSFDTETSDLDVKNAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAKNAIIQLNRY 389 Query: 77 K-IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI---- 131 K + ++D ++ F + +R T I S L T + GL + + + Sbjct: 390 KLVLQNFKYDYEIIKNNFDIELRLYADTMILSWLLNT-NEKVGLDYQIDKYFDHKMISFT 448 Query: 132 ---SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF---TEKLQRLGRSDLA-TSCC 184 K + S+ + +YAA D + L + ++ + +LA Sbjct: 449 DVVKKGENFSNVDI----ERACEYAAEDALMTLRLFKKQLEIFKEKEEEEILNLAFEVEF 504 Query: 185 NFLMDRAELDLLG 197 +F+ A +++ G Sbjct: 505 DFIYVLANMEMNG 517 >gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 1402 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 53/206 (25%) Query: 22 AIAVDTETLGLMPRRDRLCIV--------QLS-------PGDGTVDIIRIAAGQ------ 60 + VD ET G +RDR+ + Q++ +G + +RI+ Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDRFSTFVDPEGKI-PVRISELTGIYQDM 448 Query: 61 -KNAPNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRL 109 AP L+ + H +FDI L + G+ T SR Sbjct: 449 VDKAPKLIDAILEFERFASGSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELSRR 507 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 T + + L + E L + + + A SD + + E Sbjct: 508 LLTDLSSYKLNK-VAEFLNVELRHHHR----------------ADSDAETTAGIFISLLE 550 Query: 170 KLQRLGRSDLATSCCNFLMDRAELDL 195 +L+ G N + A+ DL Sbjct: 551 RLKARG-YKWLK-ELNSIESNAKADL 574 >gi|269861493|ref|XP_002650452.1| E3 ubiquitin ligase [Enterocytozoon bieneusi H348] gi|220066093|gb|EED43599.1| E3 ubiquitin ligase [Enterocytozoon bieneusi H348] Length = 372 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 12/81 (14%) Query: 30 LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL 89 + +C + + GT+ II ++ P L + + +KI H + +L Sbjct: 146 HRYRTYQPFICWITIYVPAGTLYIIDSLKFRQVLPKLNLLKCN--IKKIIH-CEECVKLL 202 Query: 90 FYTFG---------VRVRPVF 101 + FG + +F Sbjct: 203 YEEFGEIGCYVNFNYIPKNIF 223 >gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1042 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 2/67 (2%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102 G + I + G+ +K++H FD VL G+ + Sbjct: 669 FGDGKNRLWIDVLDGGEDVLKVFKRYFESPSIKKVWHNYSFDKHVLGRH-GIHPQGFHAD 727 Query: 103 TKIASRL 109 T +RL Sbjct: 728 TIHLARL 734 >gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford] gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford] Length = 229 Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 27/115 (23%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113 A + + + D K + H FDI L + + + T + +R + Sbjct: 77 ADDFLEFIADSKL--VIHNAPFDIKFLNHELSLLKRAEIKLLELSNAIDTLVMAR-SMFP 133 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 +++ L K D S QL A D L + ++ T Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVELT 173 >gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3] gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3] Length = 1444 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FDI L G PV T +R H L K+ I ++ Sbjct: 511 VAHNASFDIGFLNAGLARMGRGKIANPVIDTLELARFLYPDLKNHRLNTLCKKF-DIELT 569 Query: 133 KAQQS 137 + ++ Sbjct: 570 QHHRA 574 >gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61] gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52] gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61] gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52] Length = 1444 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FDI L G PV T +R H L K+ I ++ Sbjct: 511 VAHNASFDIGFLNAGLARMGRGKIANPVIDTLELARFLYPDLKNHRLNTLCKKF-DIELT 569 Query: 133 KAQQS 137 + ++ Sbjct: 570 QHHRA 574 >gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977] gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus] Length = 902 Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 31/102 (30%), Gaps = 13/102 (12%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL----FYTFGVRVRPV 100 + GDG I + L L D R K H + I L + GV Sbjct: 360 ADGDG-AYIDTTTVTPDDEAALAEWLADAARPKALHEAKQAIHALAGRGWELGGVTS--- 415 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINI----SKAQQSS 138 T +A+ L R L D L + QQ S Sbjct: 416 -DTALAAYLVRPGQRSFALDDLSLRYLRRELRAEDDGEQQLS 456 >gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 86-028NP] gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP] Length = 255 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 61/201 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D VD I Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L + LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYLGKRNNLDALCER-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFTEKLQRLGRSDLATSC 183 + L T G+++L Sbjct: 172 VYLMMTG-----GQTNLFDEE 187 >gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124] gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124] Length = 1424 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDIIRIAAG-- 59 + + D ET GL D ++Q++ D +D + Sbjct: 378 NLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIVEQFDEFIDPGHPLSAFT 434 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 K A LV +L + + + H FD+ + + ++P Sbjct: 435 TELTGITDNHVKGAKPLVQVLQEFQEFCQGTVLVAHNATFDVGFMNANYERHQLPTILQP 494 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 495 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 526 >gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 651 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 6/92 (6%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102 + D V ++ +A G+K ++ ++ + K H F+ L G ++ C Sbjct: 31 AVDDEPVKVVDLACGEKIPSEVLDLIDEPAIIKYAHNAVFERLCLSRYLGTQLDTDQWHC 90 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 + I + + LKD + +LG++ K Sbjct: 91 SMIHAMMLGLPA---SLKD-VGAVLGLSEDKQ 118 >gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI] gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 937 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 30/144 (20%) Query: 21 DAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDII--------RIAAGQKNAPNL--V 67 + + D ET GL P DR+ +V+L VDI + KN L Sbjct: 4 EIVVCDLETTGLDPLSDRIIEIGLVRLKDLK-IVDIYHTMVNPGRPLPLKIKNLTGLDDS 62 Query: 68 GMLVDEK----REKIF----------HYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRT 112 + REK+ H RFD+ L G+ + P + T +RL Sbjct: 63 DLASAPAFSGVREKVLGFIGDAPIAGHNIRFDMGFLAAAGGISFKNPAYDTVELARLAVP 122 Query: 113 YTNQHGLKDNLKELLGINISKAQQ 136 + L+ + L + + + Sbjct: 123 GLPTYRLESLCER-LNVEAAARHR 145 >gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018] gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018] Length = 896 Score = 40.0 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 23/193 (11%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA------GQKNAPNLVGMLVDEKRE 76 ++ DTET L + +L + + + I Q + ++ R Sbjct: 330 VSFDTETSDLDVKNAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAKNAIIQLNRY 389 Query: 77 K-IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI---- 131 K + ++D ++ F + +R T I S L T + GL + + + Sbjct: 390 KLVLQNFKYDYEIIKNNFDIELRLYADTMILSWLLNT-NEKVGLDYQIDKYFDHKMISFT 448 Query: 132 ---SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF---TEKLQRLGRSDLA-TSCC 184 K + S+ + +YAA D + L + ++ + +LA Sbjct: 449 DVVKKGENFSNVDI----ERACEYAAEDALMTLRLFKKQLEIFKEKEEEEILNLAFEVEF 504 Query: 185 NFLMDRAELDLLG 197 +F+ A +++ G Sbjct: 505 DFIYVLANMEMNG 517 >gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC 3502] gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397] gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall] gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC 3502] gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A str. ATCC 19397] gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A str. Hall] Length = 1432 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 7/91 (7%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108 + A K P + + D + H FD++ + + V T SR Sbjct: 477 VDDKEAIDKILPRFIDFIGDS--VVVAHNASFDVSFINKNCKDLKIEFENSVMDTVTLSR 534 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 ++ L + + + LGI++ ++ D Sbjct: 535 FLFPELKRYKL-NVIAKHLGISLENHHRAVD 564 >gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC3059-06] gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC3059-06] gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA41301] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73] gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4] gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae TIGR4] gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae TIGR4] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA47901] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA41317] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54] gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae G54] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae MLV-016] gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200] gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae MLV-016] gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426] gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus kaustophilus HTA426] Length = 1444 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FDI L G PV T +R H L K+ I ++ Sbjct: 511 VAHNASFDIGFLNTGLARMGRGKIANPVIDTLELARFLYPDLKNHRLNTLCKKF-DIELT 569 Query: 133 KAQQS 137 + ++ Sbjct: 570 QHHRA 574 >gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14] gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada MDR_19F] gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae Taiwan19F-14] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP18-BS74] gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP18-BS74] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|32442297|gb|AAP82219.1| DNA polymerase [Podovirus GOM] Length = 397 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 7/72 (9%) Query: 102 CTKIASRLTRT-YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 T + S L+ + H L+ + L SK +DW+ L+ + +Y DV Sbjct: 1 DTLVMSSLSNPNREDGHSLRAWGERL---GFSKGD-HTDWTR--LTPDMEKYCVRDVEVT 54 Query: 161 HALRLQFTEKLQ 172 L ++L Sbjct: 55 EKLYQHLLKELD 66 >gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus pneumoniae 670-6B] gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae 670-6B] gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA17545] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810] Length = 255 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 61/201 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D VD I Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L + LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCER-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFTEKLQRLGRSDLATSC 183 + L T G+++L Sbjct: 172 VYLMMTG-----GQTNLFDEE 187 >gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14] gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455] gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14] gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200] gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75] gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6] gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39] gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6] gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae D39] Length = 1463 Score = 40.0 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 1_1_41FAA] gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium sp. 1_1_41FAA] Length = 1449 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 504 VAHNAPFDMGFIKRDIKEYLNIDLECSVIDTLQMARDLFPDFKKYGLGDL-NKALGLALE 562 Query: 133 KAQQSSD 139 K ++ D Sbjct: 563 KHHRAVD 569 >gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str. Wilmington] gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 229 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 I H FDI L + + + T + +R + ++ L K Sbjct: 90 IIHNAPFDIKFLNHELSLLKRTEIKFLELTNTIDTLVMAR-SMFPGARYSLDALCKRF-- 146 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 D S QL A D L + + T Sbjct: 147 --------KVDNSGR-----QLHGALKDAALLAEVYVALT 173 >gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 643 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102 S DG V +I +A+G+ ++ L DE EK F+ L R++P +C Sbjct: 38 SIDDGEVKVIDLASGEIIPEEILSALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYC 97 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 T I S L+ + E+L + K Sbjct: 98 TMIWSAYLGLPL---SLEK-VGEVL--KLDKQ 123 >gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104] Length = 1463 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1873-00] gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1873-00] Length = 1463 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|229005847|ref|ZP_04163541.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4] gi|228755311|gb|EEM04662.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4] Length = 286 Score = 40.0 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 8/81 (9%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRPV-FCTKIASRLTR 111 Q+ P + L ++ + H FD+ L + + + T ++ Sbjct: 44 PTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNANMLRLPEPKNIVIDTVFLAKRYM 101 Query: 112 TYTNQHGLKDNLKELLGINIS 132 + H L+ K +LGI +S Sbjct: 102 KHAPNHKLETL-KRMLGIRLS 121 >gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454] gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 927 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 29/177 (16%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGMLVDEKR 75 DTET L P R R+ V + G + +A + P L L Sbjct: 355 DTETTSLDPMRARIVGVSFATEPGRAAYVPLAHRGPDHPVQLPRDEVLARLKPWLESPAH 414 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 +K+ + ++D VL G+ + + T + S + ++ H + + LG+ K Sbjct: 415 KKVGQHLKYDAQVLASH-GITLAGIEHDTLLESYVLESHRP-HDMDNLATRHLGVKTIKY 472 Query: 135 QQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180 + + A Q+ +Y+A D L ++Q D Sbjct: 473 EDVAGKGA-----AQIGFDEVSVDVATEYSAEDADITLRLHQVLYPQIQVEKGLDYV 524 >gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46] gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46] Length = 881 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 13/129 (10%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109 V + ++A L L K+ H + + VL+ V + T +A+ L Sbjct: 354 AVSLDLGELSAEDADALREWLA-GDHPKLVHDSKSAMHVLWNYDFELVGVIHDTFLAAYL 412 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH---LHALRLQ 166 R + L + ++ LG + +D L L A D H + L + Sbjct: 413 LRPSQRSYSLDNVVQRHLGQTL----SQAD-GQMTL----LDGPAEDASHVAAVIDLAER 463 Query: 167 FTEKLQRLG 175 +L G Sbjct: 464 LAVELDEAG 472 >gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70] gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70] Length = 910 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium sp. TrichSKD4] gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium sp. TrichSKD4] Length = 470 Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 49/199 (24%) Query: 3 TIRVHEGDIPAECAARYVDAIAV---DTETLGLMPRRDRLCIVQLS----------PGDG 49 + E D R +++++ DTET GLMP +D + VQ+ PG+ Sbjct: 256 DFALQEHDSERALLKRPLESLSFTVFDTETTGLMPNKDEI--VQIGAVRVVNGKIVPGEV 313 Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKR--------------------EKIFHYGRFDIAVL 89 ++ A V + DE + H FD+A L Sbjct: 314 IDQLVDPGRPIPPASTKVHGITDEMVKGAPDAVTSVQQFHTFAKDSVIVAHNAPFDMAFL 373 Query: 90 FYTFG----VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDL 145 P+ T + S + T H L LG+ I + + L Sbjct: 374 HRYGRESGLEWDHPIMDTVLLSAVVYGTTEIHTLDALCDR-LGVTIPVELRHT-----AL 427 Query: 146 SDEQLQYAASDVV-HLHAL 163 D Q A ++V+ HL + Sbjct: 428 GDAQ---ATAEVLCHLLPI 443 >gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2] Length = 888 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 14/159 (8%) Query: 46 PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTK 104 D + AG+ + L L + I H + I + + G+ V V T Sbjct: 352 APDEAWVVDLAEAGEADVSKLSSALRSKTL--ILHSSKTQIKA-WRSLGLDVDDVAGDTA 408 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL-----QYAASDVVH 159 +A+ L + L+ E GI +S A+ S A DL +Q AA+ Sbjct: 409 LAAYLLVPDQRSYELQQIALERAGIELSDAESDSGQLALDLESDQTAQTHGHRAAA---- 464 Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 L + K+ S + + A ++L G Sbjct: 465 LLEVHDILAAKIDEANMSQVYRDIELPLVPVLARMELAG 503 >gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] Length = 950 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105 + I+ + L L E I H + L + G P+F TK+ Sbjct: 406 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 461 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 A L + + LK + L I+ ++ +Q S Sbjct: 462 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494 >gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] Length = 950 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105 + I+ + L L E I H + L + G P+F TK+ Sbjct: 406 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 461 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 A L + + LK + L I+ ++ +Q S Sbjct: 462 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494 >gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9] Length = 1439 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 8/92 (8%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-----RVRPVFCTKIAS 107 ++ + V + D + H RFDI + + PV T + Sbjct: 482 VVDAPELEPKLREFVEFIGDA--VLVAHNARFDIGFIQANCKAIGLPEVMNPVLDTLELA 539 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 R H L IN+ ++ D Sbjct: 540 RFLHPSMKNHRLNTLSARY-KINLENHHRAID 570 >gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334] gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus casei ATCC 334] Length = 1444 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 40/169 (23%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59 T + D P + A+ + + D ET GL D+ +++L+ DG V I + Sbjct: 404 TPVAYRADEPRDLAS--AEYVVFDVETTGLSAVYDK--VIELAAVKMKDGKV-IDQFEEM 458 Query: 60 QKNAPNLVGMLVD---------------EKREKIF-----------HYGRFDIAVL---- 89 L + ++ K+F H FD+ L Sbjct: 459 IDPGFPLSELTINLTHITDDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGY 518 Query: 90 -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + PV T SR+ H L K+ +++ ++ Sbjct: 519 ERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566 >gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1437 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 40/169 (23%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59 T + D P + A+ + + D ET GL D+ +++L+ DG V I + Sbjct: 397 TPVAYRADEPRDLAS--AEYVVFDVETTGLSAVYDK--VIELAAVKMKDGKV-IDQFEEM 451 Query: 60 QKNAPNLVGMLVD---------------EKREKIF-----------HYGRFDIAVL---- 89 L + ++ K+F H FD+ L Sbjct: 452 IDPGFPLSELTINLTHITDDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGY 511 Query: 90 -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + PV T SR+ H L K+ +++ ++ Sbjct: 512 ERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 559 >gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] Length = 950 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105 + I+ + L L E I H + L + G P+F TK+ Sbjct: 406 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 461 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 A L + + LK + L I+ ++ +Q S Sbjct: 462 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494 >gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] Length = 913 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 21/167 (12%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------AGQKNAPNLVGMLVDEK 74 +DTET L RL + LS G I +A L L + Sbjct: 340 LDTETTSLDSMTARLVGISLSVKPGFAAYIPLAHHPIEVAKQLPLDHVLKKLKSWLENPA 399 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI-- 131 ++K+ ++D + + ++ + T + S + ++ +H + + LL Sbjct: 400 KKKVGQNLKYDSHIFANYH-IHLQGIAHDTLLESYVLESH-RRHDMDSLSERLLDYKPIS 457 Query: 132 -----SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 K + +L +YAA D L ++++ Sbjct: 458 YEEICGKGASQIGFDQIELDCA-TRYAAEDADITFQLHENMWPRIEK 503 >gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23] gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23] gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus casei LC2W] gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus casei BD-II] Length = 1444 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 40/169 (23%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59 T + D P + A+ + + D ET GL D+ +++L+ DG V I + Sbjct: 404 TPVAYRADEPRDLAS--AEYVVFDVETTGLSAVYDK--VIELAAVKMKDGKV-IDQFEEM 458 Query: 60 QKNAPNLVGMLVD---------------EKREKIF-----------HYGRFDIAVL---- 89 L + ++ K+F H FD+ L Sbjct: 459 IDPGFPLSELTINLTHITDDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGY 518 Query: 90 -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + PV T SR+ H L K+ +++ ++ Sbjct: 519 ERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566 >gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8] Length = 955 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105 + I+ + L L E I H + L + G P+F TK+ Sbjct: 411 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 466 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 A L + + LK + L I+ ++ +Q S Sbjct: 467 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 499 >gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii] gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii] Length = 788 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 43/168 (25%) Query: 47 GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105 G V + + G + + +KI+H FD +L G++ + T Sbjct: 66 GKSRVWVDLLNGGPGILDVFRPYFENAEIKKIWHNYSFDKHILGNY-GIKAAGFYADTMH 124 Query: 106 ASRLTRTYTNQHGL--------------------KDNLKELLGINISKA----------- 134 +RL + G K ++K+L I K Sbjct: 125 LARLWDSARGGLGYSLEALTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIP 184 Query: 135 -----QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 Q S D D+ + Y+A D V L +KL + Sbjct: 185 PVEELQTSKD--TR---DKWIYYSAHDSVCTWHLWSSLKKKLLKASWY 227 >gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang] gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus casei str. Zhang] Length = 1444 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 40/169 (23%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59 T + D P + A+ + + D ET GL D+ +++L+ DG V I + Sbjct: 404 TPVAYRADEPRDLAS--AEYVVFDVETTGLSAVYDK--VIELAAVKMKDGKV-IDQFEEM 458 Query: 60 QKNAPNLVGMLVD---------------EKREKIF-----------HYGRFDIAVL---- 89 L + ++ K+F H FD+ L Sbjct: 459 IDPGFPLSELTINLTHITDDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGY 518 Query: 90 -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + PV T SR+ H L K+ +++ ++ Sbjct: 519 ERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566 >gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10] gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10] Length = 1433 Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 35/151 (23%) Query: 21 DAIAVDTETLGLMPRRDRLCIV--------QLSPGDGTVD---------IIRIAAGQ--- 60 D + D ET GL P++DR+ + Q+ I+++ Sbjct: 421 DFVVFDIETTGLNPQQDRITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITNDM 480 Query: 61 -KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRV----RPVFCTKIASRLT 110 K+AP + +L + + + H FD+ + + + P T L Sbjct: 481 VKDAPPIEQVLNEFMEFIQGSVLVAHNANFDVGFIKHNAKIIGEKVKNPYLDTL---ELC 537 Query: 111 RTYTNQHG-LK-DNLKELLGINISKAQQSSD 139 R + G K + + + L I + ++ D Sbjct: 538 RKMFPELGRYKLNIVAKHLKIELENHHRAVD 568 >gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5] gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5] Length = 909 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVF-CTKIASRLTR 111 + L G L D +R K+ H + AVL F G ++ + T+IA+ L R Sbjct: 375 DPSRLDADDEAALAGWLADAERPKVLHDSK--PAVLAFAAHGWELQGIARDTQIAAYLAR 432 Query: 112 TYTNQHGLKDNLKELLGINI 131 + L D L + Sbjct: 433 PDQRSYDLTDLALRYLHREL 452 >gi|167538020|ref|XP_001750676.1| hypothetical protein [Monosiga brevicollis MX1] gi|163770810|gb|EDQ84489.1| predicted protein [Monosiga brevicollis MX1] Length = 733 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 24/88 (27%) Query: 83 RFDIAVLFYTFGVRVRPVFC--------TKIASRLTRTYTNQHG----LKDNLKELLGIN 130 R DIA ++ +GV V P+ T AS G + ++K Sbjct: 85 REDIAKIYIDYGVAVEPIHDLRDILAPETGSASVFEAFQREFPGGTFRYQRDVK------ 138 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVV 158 SSDW DL + Q+ AA D Sbjct: 139 ------SSDWWRRDLDEAQISLAAFDAW 160 >gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4] gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4] Length = 899 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 16/99 (16%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR--------FDIAVLFYTFGVR 96 + G + + A G + L G L D+ K H + D+ GV Sbjct: 348 AAGGASAHVDLAAIGPDDEQALQGWLGDDAVHKAVHDAKAATHALMGRDL----RLGGVT 403 Query: 97 VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 +A+ L R +GL + + L + +A+ Sbjct: 404 ----MDVALAAYLVRPGQRSYGLAELFQRHLRRELPEAE 438 >gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31] Length = 1449 Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYT----FGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + + V T +R ++GL D + LG+ + Sbjct: 504 VAHNAPFDMGFIKRDIKEYLNIDLENSVIDTLQMARDLFPDFKKYGLGDL-NKSLGLALE 562 Query: 133 KAQQSSD 139 K ++ D Sbjct: 563 KHHRAVD 569 >gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str. Madrid E] gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii] gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22] Length = 229 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 30/123 (24%) Query: 60 QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKI 105 K+ P + D I H FDI L + + + T + Sbjct: 67 LKDKPLFKTIANDFLKFIADSTLIIHNAPFDIKFLNHELSLLKRTEIKFLELTNTIDTLV 126 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 +R ++ L K D S QL A D L + + Sbjct: 127 MAR-NMFPGARYSLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYV 170 Query: 166 QFT 168 T Sbjct: 171 ALT 173 >gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 595 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 21/122 (17%) Query: 57 AAGQKNAPNLVGML-VDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASR-- 108 ++ P L+ L + + H FD L + PV T +R Sbjct: 89 PPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYPVVDTLRLARAV 148 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 L R T H L G+ ++ ++ L+ A + V LH L + Sbjct: 149 LARGETRNHRLATLAA-YFGVPVAPNHRA------------LEDARATVGVLHGLVERLR 195 Query: 169 EK 170 Sbjct: 196 PM 197 >gi|125571950|gb|EAZ13465.1| hypothetical protein OsJ_03382 [Oryza sativa Japonica Group] Length = 287 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGV 95 + ++Q+ G + +I L L D + + H D+ L + + Sbjct: 151 VAVLQICVG-RRCLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHD---DVDKLREHYDL 206 Query: 96 RVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 V +A++ GL+ + E++ + + K + S W + L+ +Q+ Sbjct: 207 EVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVM 266 Query: 152 YAASD 156 YA +D Sbjct: 267 YACAD 271 >gi|32442301|gb|AAP82221.1| DNA polymerase [Podovirus GOM] Length = 399 Score = 39.6 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 20/108 (18%) Query: 102 CTKIASRLTRTYTNQHGLKDNLK-ELLGINISKAQQSSDWSAD----------------D 144 T + SRL Y N+ + + L + + W Sbjct: 1 DTLVLSRLV--YPNRRERDAIHRWKYLDTKLYGSHSLKAWGQRLDFAKGDYGQTEDAWEK 58 Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 LS+ ++Y DV H L KLQ L + +R E Sbjct: 59 LSEAMVEYCIQDVELTHKLYGILKPKLQSRKALSL-EQELTVICNRQE 105 >gi|119490378|ref|ZP_01622856.1| hypothetical protein L8106_13790 [Lyngbya sp. PCC 8106] gi|119454037|gb|EAW35191.1| hypothetical protein L8106_13790 [Lyngbya sp. PCC 8106] Length = 829 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 17/122 (13%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVF--CTKIASR 108 IR+ + N + ++ ++ +FHY D+ VL+Y+F G+ + CT S+ Sbjct: 44 IRVQMLETVLNNFIKVIQNK--ILVFHYAEHDLKVLYYSFKAAGITPPKLTIRCTWELSK 101 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + L+ + L + I+ + +S + A D + H L Sbjct: 102 FYYPRMQSYSLEAL-SKFLHLKINGKRFNSSLAHR---------AKYDALFTHQLYQHLM 151 Query: 169 EK 170 ++ Sbjct: 152 KQ 153 >gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411] gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411] Length = 859 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 12/105 (11%) Query: 37 DRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-- 93 ++L ++ D V + +A + L L + + K H D ++T Sbjct: 330 EQLTLL---DRDNVVIVQDLADVAPKDEKALAEWLANPQATKWLH----DSKKAYHTLQN 382 Query: 94 -GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 G+ + V T +A+ L R L D ++ +G +S+ Sbjct: 383 QGLTLDGVEHDTSLAAYLLRPDVRTLSLADVVQRHVGHELSEGAT 427 >gi|224139642|ref|XP_002323207.1| predicted protein [Populus trichocarpa] gi|222867837|gb|EEF04968.1| predicted protein [Populus trichocarpa] Length = 215 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 A +L + G+K +E+LG I K S W L+ Q+QYA D + Sbjct: 149 AEKLGDSRWKNSGVKRLAREVLGKEIEKPKRITLSRWDNPWLTPAQVQYACLDAFLSCKI 208 Query: 164 RLQFTE 169 Sbjct: 209 GESLVA 214 >gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72] Length = 1462 Score = 39.6 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 39/147 (26%), Gaps = 37/147 (25%) Query: 14 ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67 + A + D ET GL D ++Q++ G+ + Sbjct: 416 DMALGDATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472 Query: 68 GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99 L E+ K + H FD+ + + +P Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHNLPKITQP 532 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126 V T +R +HGL K Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559 >gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1] gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1] Length = 707 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 21/102 (20%) Query: 78 IFHYGRFDIAVLFYTFGV----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H FD+ + G PV T + S +T +H L+ LG+ IS Sbjct: 599 VAHNAAFDMKFIRLKEGQCGLKFENPVLDTLLLSVFLHDHTPEHTLEAIANR-LGVEISG 657 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 A D + + Q L+ G Sbjct: 658 RHT----------------ALGDTLVTGEIFAQMLPLLEERG 683 >gi|195379354|ref|XP_002048444.1| GJ11350 [Drosophila virilis] gi|194155602|gb|EDW70786.1| GJ11350 [Drosophila virilis] Length = 282 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 17/148 (11%) Query: 34 PRRDRLC---IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR--FDIAV 88 R C ++ ++ + T + + A L +L E KI HY D+ Sbjct: 83 SFYGRHCITSVMVIATANNT-YVFDLKALGVIFRELSVLLEAEYPRKIMHYSHRICDL-- 139 Query: 89 LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK---------AQQSSD 139 LF+ +R+ + T +A + R L+D + + + +S+ ++ + Sbjct: 140 LFHQHKLRINGICDTFVALCVARQDRCNCTLQDAISLIFELPLSELTCDEITSASESLRN 199 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQF 167 ++A LS Q+QY + H L Sbjct: 200 FTARPLSRGQIQYLGKLAILQHKLHDTL 227 >gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus vestibularis F0396] gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus vestibularis F0396] Length = 1464 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDIIRIAAG-- 59 + + D ET GL D ++Q++ D +D + Sbjct: 418 NLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIVEQFDEFIDPGHPLSAFT 474 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 K A LV +L + + + H FD+ + + +P Sbjct: 475 TELTGITDNHVKGAKPLVQVLQEFQEFCQGTVLVAHNATFDVGFMNANYERHQLPTISQP 534 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 535 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566 >gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16] gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16] Length = 900 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 3/69 (4%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 L + +K+ H + + G+ + + F T++A+ L + L+ Sbjct: 378 LQALFA-PDIQKVVHGAKE-LEKELMDQGIEPQGIRFDTELAAYLLSPTDGSYDLEKLGI 435 Query: 125 ELLGINISK 133 +K Sbjct: 436 TYYNQEFAK 444 >gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bifidobacterium longum DJO10A] Length = 682 Score = 39.6 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105 + I+ + L L E I H + L + G P+F TK+ Sbjct: 138 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 193 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 A L + + LK + L I+ ++ +Q S Sbjct: 194 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 226 >gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454] gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454] Length = 281 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 10 DIPAECAARYVDAIA-VDTETLGLMPRRDRL---CIVQL-----SPGDGTVDIIRIAAG- 59 D+ + +A VD ET G P DR+ ++++ VD ++ Sbjct: 32 DLASLIHDADARPLAFVDLETTGGRPGLDRITEVGVIEVDRDGVRRWSTLVDPLQPIPPF 91 Query: 60 -----------QKNAPNLVGM---LVDEKREKIF--HYGRFDIAVLFYTF---GVRVRP- 99 + AP + L K+F H RFD L F G+R P Sbjct: 92 VQQLTGITDAMVRGAPTFDALAAELARRLDGKLFIAHNARFDHGFLKKAFEQIGIRFDPD 151 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126 V CT SR ++HGL + L Sbjct: 152 VLCTVRLSRALFPRESRHGLDALAQRL 178 >gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] Length = 905 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 19/171 (11%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNLVGMLVDEK 74 +DTET GL P R L + S I + L L D Sbjct: 332 LDTETTGLDPMRAELVGISFSVEPHHGAYIPLGHRYTGVPRQLPLDFVLEKLKPWLTDPS 391 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 K+ +FD V G+ ++ + T + S + ++ H + + LGI Sbjct: 392 APKLGQNLKFDRHVFANH-GIGLKGIVHDTLLQSYVFESHRP-HDMDNLALRHLGIKTIT 449 Query: 134 AQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSD 178 + + A + EQ+ YAA D L ++ + + D Sbjct: 450 YDEVTGKGAARIGFEQVDIERAAQYAAEDADVTLQLHQHLYAEVGKDAKLD 500 >gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7] gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7] gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208] gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3] Length = 1437 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 33/158 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 PA + D ET GL D L V++ G+ I Sbjct: 411 PAHRLLEEDTYVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDKFEAFANPHHPLSATTI 470 Query: 55 RIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR------P 99 + + AP++V ++ D + H FD+ L + ++ P Sbjct: 471 ELTGITDDMVRDAPDVVDVVRDFKEWIGDDVLVAHNASFDMGFLNVAYKRLLKTEKAKNP 530 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T +R H L K+ I +++ ++ Sbjct: 531 VIDTLELARFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567 >gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42] gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42] Length = 1437 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 33/158 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 PA + D ET GL D L V++ G+ I Sbjct: 411 PAHRLLEEDTYVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDKFEAFANPHHPLSATTI 470 Query: 55 RIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR------P 99 + + AP++V ++ D + H FD+ L + ++ P Sbjct: 471 ELTGITDDMVRDAPDVVDVVRDFKEWIGDDVLVAHNASFDMGFLNVAYKRLLKTEKAKNP 530 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T +R H L K+ I +++ ++ Sbjct: 531 VIDTLELARFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567 >gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] Length = 899 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVF-CTKIASRLTR 111 + L G L D +R K+ H + AVL F G + + T+IA+ L R Sbjct: 365 DPSRLDADDEAALAGWLADAERPKVLHDSK--PAVLAFAAHGWELHGIARDTQIAAYLAR 422 Query: 112 TYTNQHGLKDNLKELLGINI 131 + L D L + Sbjct: 423 PDQRSYDLTDLALRYLHREL 442 >gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus salivarius SK126] gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus salivarius SK126] Length = 1464 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDIIRIAAG-- 59 + + D ET GL D ++Q++ D +D + Sbjct: 418 NLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIIEQFDEFIDPGHPLSAFT 474 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 K A LV +L + + + H FD+ + + +P Sbjct: 475 TELTGITDNHVKGAKPLVQVLQEFQEFCQGTVLVAHNATFDVGFMNANYERHQLPTISQP 534 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 535 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566 >gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448] gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448] Length = 1469 Score = 39.6 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 37/126 (29%), Gaps = 41/126 (32%) Query: 73 EKREKIF-------HYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLK 120 EK KI H FD + L F + + P+ T SR H LK Sbjct: 482 EKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLK 541 Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS-------DVVHLHALRLQFTEKLQR 173 + K +++YA D L + F +L+ Sbjct: 542 NVAKRY----------------------EIEYAEEIAHRADYDAKILTTIWKNFLAELKS 579 Query: 174 LGRSDL 179 +DL Sbjct: 580 QNINDL 585 >gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM 12168] gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM 12168] Length = 186 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 36/158 (22%) Query: 15 CAARYVDAIAVDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRIAAG----------- 59 A A DTET GL P +R ++++ +G + I Sbjct: 16 LFADGTVFTAFDTETTGLKPEYER--LIEIGAIRFDKNGIIARYDILINPGKPIPPGASA 73 Query: 60 --------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF---GVRV--RPVF 101 +N P + +L D + H FD++ + G Sbjct: 74 INNITDDMVRNCPLIESVLPDFLTFVRDSVLVAHNAGFDLSFVNKELERSGFNPLKNNAA 133 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 T +R H L+ GI++ A ++ D Sbjct: 134 DTVHLARSRFPQLPNHKLQSLAA-YFGIDVRNAHRAED 170 >gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72] Length = 474 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 32/139 (23%) Query: 19 YVDAIAVDTETLGLMPRRDRLC-----------IVQ-----LSPGDGTVDIIRIAAGQKN 62 + VD ET G P RDR+ +VQ ++PG I+ G + Sbjct: 4 PARYVLVDLETTGAHPLRDRITEIAILRIERGQLVQRWESLINPGVPIPPTIQGVTGIDD 63 Query: 63 -----APNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVRV-RPVFCTKIAS 107 AP+ + L+D+ + H RFD L + G PV CT S Sbjct: 64 TMVAGAPDFAAVADTVAALLDDCVF-VAHNARFDYGFLKTAYAALGREFDAPVLCTVKLS 122 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R ++HGL ++ Sbjct: 123 RALYPDHHRHGLDAIIERH 141 >gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV] gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV] Length = 1464 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 42/164 (25%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRI 56 I +E D+ + + D ET GL D ++Q++ G+ + Sbjct: 411 PITYNEVDME----LKEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEF 463 Query: 57 AAG------------------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89 KNA L +L + + + H FD+ + Sbjct: 464 INPGHPLSAFTTDLTGITDEHVKNAKPLEQVLQEFQDFCQDTVLVAHNATFDVGFMNVNY 523 Query: 90 -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + +PV T +R +HGL K +++ Sbjct: 524 ERHGLPRITQPVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 566 >gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 1415 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 35/150 (23%) Query: 22 AIAVDTETLGLMPRRDRLC------------------IV--QLSPGDGTVDIIRI----- 56 + D ET GL P RD++ ++ Q+ + ++ RI Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQMLIPEKVQELTRITNALV 460 Query: 57 ---AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASRL 109 ++ AP + D + H +FD A + F + P+ T +R Sbjct: 461 ENEPTIEEVAPKFYDFIKDS--VLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFARA 518 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139 T T + L K+ G+++ A ++ + Sbjct: 519 TVKDTKKFNLATLCKKF-GVSLVGAHRAVN 547 >gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC 33693] Length = 1449 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + V T +R ++GL D + LG+ + Sbjct: 504 VAHNAPFDMGFIKRDIKEYLNIDLESSVIDTLQMARDLFPDFKKYGLGDL-NKSLGLALE 562 Query: 133 KAQQSSD 139 K ++ D Sbjct: 563 KHHRAVD 569 >gi|322818894|gb|EFZ26175.1| hypothetical protein TCSYLVIO_7654 [Trypanosoma cruzi] Length = 173 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 10/95 (10%) Query: 19 YVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----ML 70 +IA+D E + R+ ++Q V + AP V L Sbjct: 70 KARSIALDIEAF-CTTEQAKQLGRISLLQACSDAKPV-VFLFDVLTLTAPTFVKSVESFL 127 Query: 71 VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105 + K+ R D+ L G++ V ++ Sbjct: 128 RNRGIRKLLFDCRRDVEALSSQLGLKPEGVLDLQV 162 >gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5] gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5] Length = 229 Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 27/114 (23%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113 A + + + D K I H FDI L + + + T + +R + Sbjct: 77 ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRTEIKLLELANTIDTLVMAR-SMFP 133 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 +++ L K D S QL A D L + ++ Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVEL 172 >gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211] gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211] Length = 1456 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 42/164 (25%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRI 56 I +E D+ + + D ET GL D ++Q++ G+ + Sbjct: 403 PITYNEVDME----LKEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEF 455 Query: 57 AAG------------------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89 KNA L +L + + + H FD+ + Sbjct: 456 INPGHPLSAFTTDLTGITDEHVKNAKPLEQVLQEFQDFCQDTVLVAHNATFDVGFMNVNY 515 Query: 90 -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + +PV T +R +HGL K +++ Sbjct: 516 ERHGLPRITQPVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 558 >gi|154308777|ref|XP_001553724.1| hypothetical protein BC1G_07811 [Botryotinia fuckeliana B05.10] gi|150852762|gb|EDN27954.1| hypothetical protein BC1G_07811 [Botryotinia fuckeliana B05.10] Length = 753 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 7/80 (8%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHG 118 Q LV + + I H D+ L P + T + R + Sbjct: 396 QDIQKRLVELF-HPRTILIGHSLDSDLKALK-----LTHPYIIDTAVIYPHPRGRPLKSS 449 Query: 119 LKDNLKELLGINISKAQQSS 138 LK ++ LG I K ++ Sbjct: 450 LKWLAQKYLGKEIQKGHGAT 469 >gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] Length = 898 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 8/88 (9%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI-AVL---FYTFGVRVRPVFCTKIASRLT 110 ++++ +L D KI H + I A L + G+ V T+I + L Sbjct: 361 PALISEEDSAAFSALLSDPNVGKIGHSMKVQIHAWLGEGYTLAGI----VGDTEIDAYLL 416 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSS 138 + D ++ L I++ Q + Sbjct: 417 HPDQRTYDFTDLVQRYLAIDLGGGAQDT 444 >gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus lacrimalis 315-B] gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus lacrimalis 315-B] Length = 1415 Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 35/150 (23%) Query: 22 AIAVDTETLGLMPRRDRLC------------------IV--QLSPGDGTVDIIRI----- 56 + D ET GL P RD++ ++ Q+ + ++ RI Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQMLIPEKVQELTRITNALV 460 Query: 57 ---AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASRL 109 ++ AP + D + H +FD A + F + P+ T +R Sbjct: 461 ENEPTIEEVAPKFYDFIKDS--VLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFARA 518 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139 T T + L K+ G+++ A ++ + Sbjct: 519 TVKDTKKFNLATLCKKF-GVSLVGAHRAVN 547 >gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341] gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341] Length = 1449 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 53/198 (26%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGT--------------VD 52 P + + D ET GL RDR +++++ G Sbjct: 419 PKNLKLKDATYVVFDVETTGLSAERDR--LIEIAAVKVKNGTEIDSFESYINPQRPISEL 476 Query: 53 IIRIA----AGQKNAPNLVGMLV------DEKREKIFHYGRFDIAVL---FYTFGVRVRP 99 I R+ ++AP ++ D+ + H +FD+ L F G+ + Sbjct: 477 ITRLTSITNDDVRDAPLEKEVMTNFYNWLDKDDILVAHNAKFDLGFLDTCFERLGLENKN 536 Query: 100 --VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 T SR +HGL + +L + + + + A D Sbjct: 537 NASIDTLFVSRAENKEAKRHGLSNL-AKLYKVRLVQHHR----------------AIYDT 579 Query: 158 VHLHALRLQFTEKLQRLG 175 + ++ ++L LG Sbjct: 580 KATAEIFVKMLDQLYELG 597 >gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK564] gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK564] Length = 1463 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLSKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2] gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2] Length = 229 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 27/115 (23%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113 A + + + D K I H FDI L + + + T + +R + Sbjct: 77 ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRAEIKLLELSNAIDTLVMAR-SMFP 133 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 +++ L K D S QL A D L + ++ T Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVELT 173 >gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 574 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 30/130 (23%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRV--RPVFCTKIAS 107 ++ + P+ + E + H FD+ + G PV T + + Sbjct: 80 VVAAPKIESVLPSFLEF--AEGTTLVAHNAGFDLGFIKAACAAHGYPPPAHPVVDTVVLA 137 Query: 108 R--LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 R LTR L + SK + L+D Q A DV+H Sbjct: 138 RKLLTRDEAPNCKLSTLARIF-----SKTEPR----HRALADAQ---ATVDVLH------ 179 Query: 166 QFTEKLQRLG 175 L+R G Sbjct: 180 ---ALLERAG 186 >gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4] Length = 1436 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 11/87 (12%) Query: 61 KNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLT 110 K+AP + ++ D E + H FD+ L PV T +R Sbjct: 481 KDAPEVSEVVTDFKKWAEDGILVAHNASFDMGFLNISYQRAGLKKASNPVIDTLELARFL 540 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQS 137 H L K+ L + +++ ++ Sbjct: 541 YPSMKNHRLNTLAKK-LDVELTQHHRA 566 >gi|40807290|ref|NP_047956.2| gp11 [Streptomyces phage phiC31] gi|579076|emb|CAA53907.1| unnamed protein product [Streptomyces phage phiC31] gi|40313247|emb|CAA07135.2| gp11 [Streptomyces phage phiC31] Length = 617 Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 41/122 (33%), Gaps = 9/122 (7%) Query: 4 IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQ 60 I E D+ AR +A+DTET GL +L VQ +I G Sbjct: 17 IPETERDLREFMHWARNKPELALDTETTGLAMYSSGYKLRTVQFGTA-HEAWVIHYELGG 75 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASRLTRTYTNQ 116 + A +L R + H FD VL V TKI + L Q Sbjct: 76 RFAEAADYVLKHCPRF-LIHNAPFDWLVLDAHTPVSMESLAPRTVDTKIKATLIDPRQPQ 134 Query: 117 HG 118 G Sbjct: 135 DG 136 >gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68] gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68] Length = 955 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 8/93 (8%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105 + I+ + L E I H + L + G P+F TK+ Sbjct: 411 SAAIVPLPITDTLRAQFARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 466 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 A L + + LK + L I+ ++ +Q S Sbjct: 467 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 499 >gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1438 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 42/169 (24%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----------------- 45 I ++ IP + + DTET GL DR +++LS Sbjct: 404 PITYNDKHIP----LKDATYVVFDTETTGLSAIYDR--VIELSAVKMKNSNVIDQFEEFI 457 Query: 46 ---------PGDGTVDIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL----- 89 + T + G K+ + + D E + H FDI + Sbjct: 458 DPGFHLSEQTTNLTSITDEMVHGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYV 517 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK-DNLKELLGINISKAQQS 137 + P+ T +R Y N G + + L + +N+ ++ Sbjct: 518 RHGMPEIKNPIIDTLTLARFL--YPNMRGYRLNTLAKKFDVNLEHHHRA 564 >gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290] gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290] Length = 1438 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 42/169 (24%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----------------- 45 I ++ IP + + DTET GL DR +++LS Sbjct: 404 PITYNDKHIP----LKDATYVVFDTETTGLSAIYDR--VIELSAVKMKNSNVIDQFEEFI 457 Query: 46 ---------PGDGTVDIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL----- 89 + T + G K+ + + D E + H FDI + Sbjct: 458 DPGFHLSEQTTNLTSITDEMVHGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYV 517 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK-DNLKELLGINISKAQQS 137 + P+ T +R Y N G + + L + +N+ ++ Sbjct: 518 RHGMPEIKNPIIDTLTLARFL--YPNMRGYRLNTLAKKFDVNLEHHHRA 564 >gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577] gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577] Length = 1438 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 42/169 (24%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----------------- 45 I ++ IP + + DTET GL DR +++LS Sbjct: 404 PITYNDKHIP----LKDATYVVFDTETTGLSAIYDR--VIELSAVKMKNSNVIDQFEEFI 457 Query: 46 ---------PGDGTVDIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL----- 89 + T + G K+ + + D E + H FDI + Sbjct: 458 DPGFHLSEQTTNLTSITDEMVHGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYV 517 Query: 90 FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK-DNLKELLGINISKAQQS 137 + P+ T +R Y N G + + L + +N+ ++ Sbjct: 518 RHGMPEIKNPIIDTLTLARFL--YPNMRGYRLNTLAKKFDVNLEHHHRA 564 >gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191] gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191] Length = 201 Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 31/98 (31%) Query: 25 VDTETLGLMPR-RDRLCIVQLSPGDGTVD-----------------IIRI---------- 56 +DTET GL P RLC + + + +I I Sbjct: 16 LDTETTGLSPYDGARLCEIAVITNGALIAKSEYGTIINPRCVISQEVINIHGITNEMAAQ 75 Query: 57 -AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 + AP L+G+L D + H FDI L F Sbjct: 76 APYFEDIAPLLIGLLTDSVI--VCHNADFDIPFLAAEF 111 >gi|223992595|ref|XP_002285981.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977296|gb|EED95622.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 438 Score = 39.2 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 2/42 (4%) Query: 114 TNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYA 153 + + GL+D + +LG+ ++K ++ S+W+ L+ EQ+ YA Sbjct: 288 SRRSGLRDLAQTILGVEMNKNKRLAMSNWAVRHLTMEQISYA 329 >gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] Length = 882 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 25/153 (16%) Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119 +L + DEK EKI + + D+ +L + ++ + + + I L + + Sbjct: 356 DIVEDLRALFEDEKIEKIGYDAKEDVIILLSK-KIDLKNLTYDSMIVEYLLDSTASSFEF 414 Query: 120 KDNLKEL-----------LGINISKAQQSSDWSADDLSDEQLQYAASDVVHL---HALRL 165 ++ + + LG + K SD D+L +Y + L L+ Sbjct: 415 QNIISKYDLGSYKDEQSLLGKGVKKK-SYSDLEKDEL----FKYFS---FILNGSFKLKE 466 Query: 166 QFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 EKL+ L DL L A ++L G Sbjct: 467 IQMEKLEELEMVDLYREIELPLLEVLAYMELTG 499 >gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J] gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J] Length = 1468 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 12/66 (18%) Query: 73 EKREKIF-------HYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLK 120 EK KI H FD + L F + + P+ T SR H LK Sbjct: 481 EKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLK 540 Query: 121 DNLKEL 126 + K Sbjct: 541 NVAKRY 546 >gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB] Length = 721 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 21/107 (19%) Query: 73 EKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E I H FD+ L +R +PV T + S + H L L+ LG Sbjct: 611 EDTVLIAHNAAFDMRFLQLKEERTNIRFTQPVLDTLLLSAVVHPNQESHKLDVILER-LG 669 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 I I K A D + + L+ + L+ G Sbjct: 670 ITIGKRHN----------------ALEDALATGEVFLKLVKLLEDQG 700 >gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232] gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232] Length = 1469 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 12/66 (18%) Query: 73 EKREKIF-------HYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLK 120 EK KI H FD + L F + + P+ T SR H LK Sbjct: 482 EKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLK 541 Query: 121 DNLKEL 126 + K Sbjct: 542 NVAKRY 547 >gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. MED193] gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Roseobacter sp. MED193] Length = 484 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 41/135 (30%), Gaps = 36/135 (26%) Query: 26 DTETLGLMPRRDRLCIVQLSP----------GDGTVDIIRIAAGQKNA------------ 63 DTET GL+P +D + VQ+ G+ ++ A Sbjct: 281 DTETTGLLPHKDDI--VQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTAMV 338 Query: 64 ---PNLVGM-----LVDEKREKIFHYGRFDIAVLFYTFG----VRVRPVFCTKIASRLTR 111 P++ L + H FD+A L P+ T + S + Sbjct: 339 QGAPDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHPILDTVLLSAVLF 398 Query: 112 TYTNQHGLKDNLKEL 126 + H L + L Sbjct: 399 GASVPHTLDALCERL 413 >gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM 2032] gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM 2032] Length = 218 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 19/111 (17%) Query: 78 IFHYGRFDIAVLFYTFGVR----VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H FD A L + P+ CT +ASR + H L + LGI Sbjct: 89 VAHNAGFDRAFLDAELALIGRHQSNPMACTVLASRRLFPESPNHKLATLVNH-LGIFTDG 147 Query: 134 AQQSSDWSADDLSDEQLQ----YAASDVVH----LHALRLQFTEKLQRLGR 176 L+D ++ A +DV+ L + ++L R+GR Sbjct: 148 TF------HRALADAEMTGHVWIAMTDVLCDRYGLDEIPFTLMQELGRIGR 192 >gi|304654266|gb|EFM47658.1| PsRxL467 [Phytophthora sojae] Length = 471 Score = 39.2 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 37/159 (23%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 V + + + + L + K++H FD VL+ G+ V+ + T +RL Sbjct: 129 VWVDNLDSAEGTLQLFKDFLESREYLKVWHNYSFDRHVLYNH-GINVQGLGGDTMHMARL 187 Query: 110 TRTYTNQHG---LKDNL-----------KELLGI-NISKA---------------QQSSD 139 T QHG L+ KEL GI + K Q+ + Sbjct: 188 WNTARFQHGGYSLEALTADLLLQRKKPMKELFGIPKLRKDGSKGKERIMPTVEELQRFPE 247 Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 + ++Y+ D L KL + + Sbjct: 248 FRKR-----WIRYSVYDAESTWFLHRVLQHKLDQTFWFE 281 >gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C300] gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. C300] Length = 1463 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKNTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|322823959|gb|EFZ29540.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 806 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 26/163 (15%) Query: 16 AARYVDAIAVDTETLGLMPRRD----RLC-IVQLSPGDGTVDIIRIAAGQKNA----PNL 66 A V+ +AV + L RLC IV ++ + +D+ AA NL Sbjct: 132 CAHSVEPVAV----VQLSTFSVTFVIRLCDIVYMARPENCIDVSEAAAVSSTLGVVLNNL 187 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIA--SR-LTRTYTNQHGLKDN 122 +L +++ K+ D L + R+ P C ++A +R L T + GL+ Sbjct: 188 TSLLANKRVAKVGVGIIGDQEKLQREYTTFRLCP--CVELAVLARHLFPTAEDVMGLRSL 245 Query: 123 ---LKELLGINISKAQQ--SSDWSAD--DLSDEQLQYAASDVV 158 G N+ K SDW + LS QL+YAA+D Sbjct: 246 KDFAARFAGRNLKKDILVICSDWGSSLGALSPLQLEYAAADAE 288 >gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168] Length = 1447 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 12/66 (18%) Query: 73 EKREKIF-------HYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLK 120 EK KI H FD + L F + + P+ T SR H LK Sbjct: 460 EKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLK 519 Query: 121 DNLKEL 126 + K Sbjct: 520 NVAKRY 525 >gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 769 Score = 39.2 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 34/123 (27%), Gaps = 23/123 (18%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRT 112 K P D I H FD+ L G+R PV T + S + Sbjct: 645 PTIDKVLPAFHAFAADT--VLIAHNAAFDMRFLQLKEEQTGLRFDHPVIDTLLLSAVVHP 702 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 H L+ + LG+ I A D + + L+ L Sbjct: 703 NQESHRLEAIAER-LGLTIVGRHT----------------ALGDAIVTAEVFLKLIPLLA 745 Query: 173 RLG 175 G Sbjct: 746 EKG 748 >gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] Length = 887 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 27/165 (16%) Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTK 104 T + + + PN + + H D+ L + F + + F T Sbjct: 354 ETALVEALLGALNDLPNADAL----GI--VGH----DLKALTHIFEAQGAQLVKMDFDTY 403 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQ-----QSSDWSADDLSD----EQLQYAAS 155 +A+ L N++ LK + L I + + L++ E+ + Sbjct: 404 VAAYLLEPADNRYDLKSLAAKYLDQTIVGEEELLGKGRT---RRALAEIAAPERAAFIVG 460 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWE 199 + +H L + +L+ + + L + A ++ +G++ Sbjct: 461 ECAAIHGLHAELAHQLEEMEMTALYQKIELPLIPVLASMESIGFK 505 >gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815] gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815] Length = 915 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 49/181 (27%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75 DTET L P ++ + ++ G I +A +AP L L + Sbjct: 343 DTETTSLDPMVAQIVGISIAVEAGKAAYIPVAHHGPDAPVQLPRDEVLAKLKPWLESRDK 402 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG------ 128 +K+ + ++D VL G+ + + T + S + ++ H + + LG Sbjct: 403 KKVGQHLKYDEQVLANY-GITMDGIEHDTLLQSYVLESHRP-HDMDNLALRHLGLKTIKY 460 Query: 129 ---------------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173 + + KA +YAA D L ++ Sbjct: 461 EDVAGKGASQIGFDEVALDKAS---------------EYAAEDADITLRLHQTLYPQIAS 505 Query: 174 L 174 Sbjct: 506 E 506 >gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] Length = 1023 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 29/143 (20%) Query: 17 ARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ----------KNAP 64 AR DA +A++ + P + LC V LS + +A Q AP Sbjct: 426 ARIHDAGHVAIEIRANSIDPMQADLCGVALSLAPNDACYVPLAHKQSGGGAGLFDGGLAP 485 Query: 65 N----------LVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRVRPVFCTKIASRLTR 111 + L +L KI FD+ V+ G+ +R ++ S + Sbjct: 486 DQVKHADAIDALRPVLESSGILKI----GFDVKFTAVMLAQHGITLRNTDDAQLISYVLD 541 Query: 112 TYTNQHGLKDNLKELLGINISKA 134 HGL+ + G + K Sbjct: 542 AGRGSHGLESLAERWFGHAMLKE 564 >gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu] Length = 917 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 13/123 (10%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P RL + S G + +A + P L L Sbjct: 343 AFDTETTSLDPMTARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDEVLARLKPWLESA 402 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 R+K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 403 DRKKVGQHLKYDAQVLANY-GIELSGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 460 Query: 133 KAQ 135 K + Sbjct: 461 KYE 463 >gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205] gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205] Length = 899 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVF-CTKIASRLTR 111 + L G L DE R K+ H + AVL F G + + T+IA+ L R Sbjct: 365 DPGRLEAADESALAGWLADETRPKVLHDSK--PAVLAFAAHGWSIEGITRDTQIAAYLAR 422 Query: 112 TYTNQHGLKDNLKELLGINI 131 + L D L + Sbjct: 423 PDQRSYDLVDLALRYLHREL 442 >gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941] gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM 9941] Length = 560 Score = 39.2 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%) Query: 78 IFHYGRFDIAVLFYTFGVR--VRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD + L G R PV T +RL ++ L + Sbjct: 115 VAHNAGFDCSFLAAARGGRGLPNPVLDTLRLARLLVPGLRRYRLSALVSHF 165 >gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2] Length = 645 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 21/106 (19%) Query: 74 KREKIFHYGRFDIAVLF---YTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + H FD+ L GVR PV T + S++ +H L+ + LG+ Sbjct: 536 DTVLVAHNAAFDLRFLELKERAAGVRFDMPVLDTLLLSQVLHPNQERHSLEAIAER-LGV 594 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + A D + + L+ LQ G Sbjct: 595 PVLGRHT----------------ALGDAIVTAEVFLKMIPLLQVAG 624 >gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] Length = 685 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 14/121 (11%) Query: 23 IAVDTETLGLMP--R----RDRLCIVQLSPGDGTVDIIRIAAGQKNAP---NLVGMLVDE 73 + +D ET P + L +++++ +P L L D Sbjct: 5 LWLDLETFSEKPIKYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQALSDP 64 Query: 74 KREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 H FD +L ++ + V T + + L G L E+LG+ + Sbjct: 65 NTIIYAHNSHFDRTMLNHSGIKIDVSRWRDTMVQA-LAHGLPGALG---ALCEVLGVPLD 120 Query: 133 K 133 K Sbjct: 121 K 121 >gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2] gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans NG80-2] Length = 1442 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 13/88 (14%) Query: 61 KNAPNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRL 109 K+AP++ +L + + H FDI L G + PV T +R Sbjct: 487 KDAPDVEEVLR-RFIDWVGDSTLAAHNASFDIGFLNAGLAKMGLGKVINPVIDTLELARF 545 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQS 137 H L K+ I +++ ++ Sbjct: 546 LYPDLKNHRLNTLCKKF-DIELTQHHRA 572 >gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] Length = 256 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 61/201 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D +VD I Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRSVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKEIAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLDLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFTEKLQRLGRSDLATSC 183 + L T G+++L Sbjct: 172 VYLMMTG-----GQTNLFDEE 187 >gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95] gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95] Length = 896 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 39/177 (22%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP---NLVGMLVDE 73 + I+ D ET L P + + + LS + + + +V +L ++ Sbjct: 332 LEKYEIISFDLETSSLDPYQADIVGIALSCKPFEGYFLYLYKEKDRWEITKEIVDLLNNK 391 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGI--- 129 K I ++DI VL G+ + V F + IA+ L + + + D KE L Sbjct: 392 KV--IGQNLKYDITVLKVN-GIELSKVHFDSMIAAYLLNPDSRRFNMDDLAKEYLDYKTI 448 Query: 130 ----------------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +I K ++YA D + L K Sbjct: 449 KYKEVMGKDIKLLTLGDIDK--------KRV-----VEYAGEDADIAYRLFEVLKPK 492 >gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16] Length = 1434 Score = 39.2 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 13/88 (14%) Query: 61 KNAPNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRL 109 K+AP++ +L + + H FDI L G + PV T +R Sbjct: 479 KDAPDVEEVLR-RFIDWVGDSTLAAHNASFDIGFLNAGLAKMGLGKVINPVIDTLELARF 537 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQS 137 H L K+ I +++ ++ Sbjct: 538 LYPDLKNHRLNTLCKKF-DIELTQHHRA 564 >gi|303275682|ref|XP_003057135.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461487|gb|EEH58780.1| predicted protein [Micromonas pusilla CCMP1545] Length = 297 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 35/165 (21%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---- 93 R+ ++QL G + R+ +++ ++ + + D+ L F Sbjct: 110 RVALLQLHA-RGLSVLTRLVGHATLHADILALMTHPNVILVGVGVKQDVRKLARDFPGGG 168 Query: 94 ------------------GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS--- 132 VRV + +A RL + GLK L ++S Sbjct: 169 GGDAAATTTTTKTTKTTTTVRVAELAD--VARRL--GHEGGCGLKALA---LANDVSTSH 221 Query: 133 --KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 K ++W LS +++Y + D + + R G Sbjct: 222 KTKRLTMTNWEKPTLSPPEVRYGSQDASLGVDVAEKLRRSAARAG 266 >gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127] gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127] Length = 256 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 51/186 (27%), Gaps = 56/186 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D VD I Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R + L + LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRSNLDALCER-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFT 168 + L T Sbjct: 172 VYLMMT 177 >gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Sagittula stellata E-37] gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Sagittula stellata E-37] Length = 468 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 54/205 (26%) Query: 12 PAECAARYVDAIA---VDTETLGLMPRRDRLCIVQLS----------PGDGTVDIIRIAA 58 P A + + +DTET GL+P +D + VQ+ PG+ ++ Sbjct: 263 PGALDAMPLGRLTYTVLDTETTGLLPHKDEI--VQIGAVRIVNGRIVPGERMDQLVNPGR 320 Query: 59 GQKNAPNLVGMLVDEKR--------------------EKIFHYGRFDIAVLFYT---FGV 95 A + V + D + H FD+A L GV Sbjct: 321 PIPPASSKVHGVTDAMVAGAPGIAEAGRRFHTFARDSVIVAHNAPFDMAFLHRHKTRMGV 380 Query: 96 R-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 P+ T + S + + H L L + I + + A Sbjct: 381 EWTHPILDTVLLSAVLFGASQTHTLDALCDR-LAVTIPPNLRHT--------------AL 425 Query: 155 SDVVHLHALRLQFTEKLQRLGRSDL 179 D + + L+ G + L Sbjct: 426 GDAQATAEVFGRMLPMLEARGMTTL 450 >gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus pyogenes M49 591] gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131] gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131] Length = 1465 Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD---GTVD------IIRIAAGQKN 62 P + + D ET GL + ++Q++ G + I Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 63 APNLVGM----LVDEK----REK-----------IFHYGRFDIAVL-----FYTFGVRVR 98 L G+ L D K K + H FD+ + + + Sbjct: 475 TTELTGITDKHLQDAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|328866460|gb|EGG14844.1| hypothetical protein DFA_10717 [Dictyostelium fasciculatum] Length = 1213 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 31/80 (38%), Gaps = 1/80 (1%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTN 115 KN L+ +L +E +K+ + + F Y + ++ KI + + + + Sbjct: 657 PIAIKNTELLIRILENEAIKKVSFNCQESFKIFFAYNTYFSPKNIWDPKILAWMYKPESK 716 Query: 116 QHGLKDNLKELLGINISKAQ 135 + + + E + K + Sbjct: 717 RVDMSTLVVEYQIDSHDKLE 736 >gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72] Length = 1463 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 223 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 39/143 (27%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGR-FDIAVLFYTFGVRV--RPVFCTKIASRLTR 111 + + +L L D + ++H G FD +L + + + V T + + L Sbjct: 51 DVTQDKTMPKDLKAYLDDPEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQA-LAH 109 Query: 112 TYTNQHGLKDNLKELLGINISKA----------------------QQSSDWSADDLS--D 147 G +L ++ +N K Q+++ L+ + Sbjct: 110 GLPGALG---SLCDIFNVNSDKTKDKEGKALIQLFCKPRPKNSKIQRAT-----ALTHFE 161 Query: 148 EQLQ---YAASDVVHLHALRLQF 167 E L+ YA SD++ + + Sbjct: 162 EWLRFKTYAGSDILAMREIYQHL 184 >gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234] gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234] Length = 232 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 52/176 (29%), Gaps = 50/176 (28%) Query: 26 DTETLGLMPRRDRL----CI-------------VQLSPGDGTVDIIRIA------AGQKN 62 DTET GL R DR+ + + ++PGD V +A K+ Sbjct: 7 DTETTGLDSREDRVIEIGGVELENQFPTGRTIHIYINPGDRKVHPDALAVHGITDDFLKD 66 Query: 63 APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRLTR 111 P+ ++ + + H FDI + F V + V T +R Sbjct: 67 KPSFADVVEEIVDFFGDARWVAHNATFDIGFINAEFDRLGLPPVVIDRVTDTLALARRKH 126 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L + I + ++ A D L + ++ Sbjct: 127 PMGPN-SLDALCRRY---GIDNSHRA------------KHGALLDSELLAEVYIEM 166 >gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2] gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2] Length = 461 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 33/152 (21%) Query: 5 RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQ-----------LSPGDGTVDI 53 + + DI E A R + + D+ET GL P++D +VQ ++ + Sbjct: 257 QTPDTDI-NETALRDLTFVVFDSETTGLDPQKDD--VVQLGAVRIVNGRIIASETFEALV 313 Query: 54 -----------------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVLFYTFG 94 + AG + + + H FD+A L + Sbjct: 314 NPGRPIPAQSTKVHGISDDMVAGAPDFTVVRDNFQRYAANAVLVAHNAPFDMAFLNRSDA 373 Query: 95 VRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + PV T S + + +H L L Sbjct: 374 IFQNPVMDTVHLSAIVFGGSAEHTLDALCARL 405 >gi|124809664|ref|XP_001348647.1| Rrp6 homologue, putative [Plasmodium falciparum 3D7] gi|23497545|gb|AAN37086.1| Rrp6 homologue, putative [Plasmodium falciparum 3D7] Length = 1136 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 10/137 (7%) Query: 33 MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT 92 R I+ + + II + ++ + + D KI + I L Sbjct: 574 RTYRGFTSIIMIGTNNMN-YIIDVFNMFEDLYIINDITTDPNILKITYNAPNIINQLQKD 632 Query: 93 FGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLKELLGINI---SKAQQSSDWSADDLSDE 148 F + +F IA + Y N ++ L + + + +K Q+ + + Sbjct: 633 FSIYFVNIFD--IA--ICSNYLNFKNNLNYLIYKYFNTVLYYKNKILQNV-LITRPIEPD 687 Query: 149 QLQYAASDVVHLHALRL 165 + ++ L+ L Sbjct: 688 MVDVIQNEFTFLYDLFD 704 >gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1465 Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW] gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW] Length = 256 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 56/201 (27%), Gaps = 61/201 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D VD I Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFTEKLQRLGRSDLATSC 183 + L T G+++L Sbjct: 172 VYLMMTG-----GQTNLFDEE 187 >gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1087-00] gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC1087-00] Length = 1463 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSVFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 650 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 6/89 (6%) Query: 48 DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF--GVRVRPVFCTKI 105 D V++I A G++ + L++ K F+I L G+ CT + Sbjct: 41 DEPVEVIDFAQGEELPQKVKTALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMV 100 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKA 134 S + + D + ++L K Sbjct: 101 QSLILGLPGS----LDMVGKVLRFEEDKQ 125 >gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002] Length = 707 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 35/123 (28%), Gaps = 23/123 (18%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRT 112 P D + H FD+ L + GVR +PV T + S + Sbjct: 583 PPLDTVLPAFRAYCADT--VLVAHNAAFDMRFLQLKEASTGVRFDQPVLDTLLLSAVLHP 640 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 H L+ + LG+ I A D + + L+ L Sbjct: 641 NQESHRLEAIAER-LGVTIIGRHT----------------AMGDAIVTGEVFLKMIPLLA 683 Query: 173 RLG 175 G Sbjct: 684 EKG 686 >gi|581071|emb|CAA50322.1| rnd [Escherichia coli] Length = 38 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%) Query: 6 VHEGDIPAECAA-RYVDAIAVDTETLGLMPRR 36 + + + C A R AIA+DTE + Sbjct: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYY 38 >gi|21234370|ref|NP_640280.1| DNA polymerase [Vibrio phage VpV262] gi|21064883|gb|AAM28367.1| DNA polymerase [Vibrio phage VpV262] Length = 661 Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 42/137 (30%) Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--CTKIASRLTRTYTN- 115 G + L+ + + + H +FDI L G+ + T +A + Sbjct: 74 GIHDMDELIQDMYEADFV-VAHNAKFDIKWLIRA-GLDPSRILVADTMLAEYVLTGNLKA 131 Query: 116 ----QHGLKDNLKELLGIN----ISKAQQ-----------------SSD-------WSAD 143 L K+ LG+ + K + SD W Sbjct: 132 GKKGALTLGALAKQYLGVTKDPLVDKLMRGGVSPRVIPKSLLERRNKSDIFQTRNLWLK- 190 Query: 144 DLSDEQLQYAASDVVHL 160 L DE ++ DV+HL Sbjct: 191 -LRDEMME---RDVIHL 203 >gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA04375] Length = 1463 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAGQK------ 61 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGYPLSAFT 473 Query: 62 ------------NAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 NA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter capsulatus SB 1003] gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003] gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB 1003] Length = 704 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 19/109 (17%) Query: 73 EKREKIFHYGRFDIAVLFY---TFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E + H FD+ L G PV T + S + H L LG Sbjct: 590 EGAVLVAHNAPFDLEFLRRKELLIGKNFDNPVLDTVLLSAVVFGAAEGHSLDALTHR-LG 648 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 I I + + + A D V L+ L+ G + Sbjct: 649 ITIPEEARHT--------------ALGDTVATAEAFLRLLPALKARGLT 683 >gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141] Length = 1463 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 921 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A LS +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFDARLAA 510 >gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB 1003] Length = 704 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 19/109 (17%) Query: 73 EKREKIFHYGRFDIAVLFY---TFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 E + H FD+ L G PV T + S + H L LG Sbjct: 590 EGAVLVAHNAPFDLEFLRRKELLIGKNFDNPVLDTVLLSAVVFGAAEGHSLDALTHR-LG 648 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 I I + + + A D V L+ L+ G + Sbjct: 649 ITIPEEARHT--------------ALGDTVATAEAFLRLLPALKARGLT 683 >gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394] gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394] Length = 1465 Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A L+ +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFEARLAA 510 >gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M334] gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M334] Length = 1463 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293] gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292] gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397] gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457] gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458] gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292] gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293] gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458] gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457] gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397] Length = 1463 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74] gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74] Length = 918 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 21/132 (15%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113 A + + G L D +R KI H + + V G+ V V T + + L + Sbjct: 389 PSALDEADERAFAGWLGDPERPKIMHDAKGLMRVFGEH-GMSVAGVSMDTALGAYLVKPG 447 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLHAL 163 L E LG + AQ+ SD QL + A D + L Sbjct: 448 RRTFALGALSLEYLGRELVPAQE---------SDGQLAFGADDESQARTLMVEARTILDL 498 Query: 164 RLQFTEKLQRLG 175 T +L +G Sbjct: 499 GTALTARLPEVG 510 >gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270] gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270] Length = 1465 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD---GTVD------IIRIAAGQKN 62 P + + D ET GL + ++Q++ G + I Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 63 APNLVGM----LVDEK----REK-----------IFHYGRFDIAVL-----FYTFGVRVR 98 L G+ L D K K + H FD+ + + + Sbjct: 475 TTELTGITDKHLQDAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM 574] Length = 1421 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 7/95 (7%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTFGVRVRP-VFCTK 104 T+D+++ A + A + + + + H FD++ V V V T Sbjct: 464 TLDMVKDAPDARQALAALREFIGDAVL-VAHNAAFDLSFLKVGFRKYLQVEVTNQVVDTL 522 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 +R+ + H L +KE I ++ ++ D Sbjct: 523 GTARVLLPHLKNHKLDTLVKEF-KIELANHHRAVD 556 >gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585] gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae 70585] Length = 1463 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEAIYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005] gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005] Length = 1465 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180] gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180] Length = 1465 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD---GTVD------IIRIAAGQKN 62 P + + D ET GL + ++Q++ G + I Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 63 APNLVGM----LVDEK----REK-----------IFHYGRFDIAVL-----FYTFGVRVR 98 L G+ L D K K + H FD+ + + + Sbjct: 475 TTELTGITDKHLQDAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS] gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS] Length = 1465 Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis NCTC 12261] gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis NCTC 12261] Length = 1463 Score = 38.8 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU 86-1044] gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU 86-1044] Length = 231 Score = 38.8 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 55/179 (30%), Gaps = 47/179 (26%) Query: 26 DTETLGLMPRRDRLCIVQLSPG------DGTVDI-IRIAAG-----------QKNAPNLV 67 DTET G+ DR+ + + V+ I I K+AP Sbjct: 9 DTETTGIKAEHDRIVEIAAYDPISGCSLEELVNPGIPIPKEASKVHHITDDMVKDAPTFK 68 Query: 68 GM------LVDEKREKIFHYGR-FDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTN 115 + I H FD+ L + F F T +R R Sbjct: 69 EVGQKFIEFCSGDVILIAHNNDNFDVHFLRHEFKRHALEMPEWRFFDTLKWARRYRPDLP 128 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 +H L+ +E+ I + A + A DV+ LH + + ++ L Sbjct: 129 RHALQFL-REIYSIEANNAHR----------------ALDDVIVLHKVFEKMSDDLDIE 170 >gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 38.8 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A L+ +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFEARLAA 510 >gi|121605515|ref|YP_982844.1| 3'-5' exonuclease [Polaromonas naphthalenivorans CJ2] gi|120594484|gb|ABM37923.1| 3'-5' exonuclease [Polaromonas naphthalenivorans CJ2] Length = 198 Score = 38.8 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 26/182 (14%) Query: 4 IRVHEGDIPAE--CAARYVD------AIAVDTET--------LGLMPRRDRLCIVQLSPG 47 + +H+ + A AAR ++ A+ DTE+ P IVQLS Sbjct: 22 LNLHQIQLIANPQQAARALEELDGVTALGFDTESKPTFAKNEASTGPH-----IVQLSTL 76 Query: 48 DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 + I ++ + + +L + K D + + GV + V Sbjct: 77 E-QAYIFQLEDAEC-RRAVAVLLETHRVIKAGFGLGDDRRRIIHKLGVDPQGVLDLNTVF 134 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 R R Y G++ + + K+ +S+W+ L + QL YAA+D + Sbjct: 135 R-ERGYRKDMGVRGAVAVMFNRRFIKSRKATTSNWANVHLQESQLIYAANDAYAALRVYQ 193 Query: 166 QF 167 Sbjct: 194 AL 195 >gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria mucosa ATCC 25996] gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria mucosa ATCC 25996] Length = 479 Score = 38.8 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 63/205 (30%), Gaps = 56/205 (27%) Query: 21 DAIAVDTETLGLMPRRDRL-------------C----IV-----------QLSPGDGTVD 52 + VD ET G +DR+ C +V QL G Sbjct: 32 PVVVVDLETTGGNLYQDRVTEVALLRFDGQSVCRYEWLVNPCKPIPEFVAQL-TGISNKM 90 Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GV-RVRPVFCTKIASR 108 + ++ A L+ +L + + H RFD L + F G+ P CT SR Sbjct: 91 VKTAPLFEEIASQLLPLL--QGAVVVAHNSRFDYTFLRHEFRRAGIDFAAPALCTVQLSR 148 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 +H L ++ I + + A +DV AL Sbjct: 149 RLYPEFYKHNLDSIIERNA-IAVENRHR----------------AMTDV---LALSDYLE 188 Query: 169 EKLQRLGRSDLATSCCNFLMDRAEL 193 L+ D + C LM+ L Sbjct: 189 HSLREKNTEDW-DNYCRSLMNPKML 212 >gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315] gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1] gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS315] gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes SSI-1] Length = 1465 Score = 38.8 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076] gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 921 Score = 38.8 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A L+ +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFEARLAA 510 >gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] Length = 871 Score = 38.8 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 27/141 (19%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121 L L +E+ K+ H G+F I V+ +G++ V T + S + + L + Sbjct: 361 LEKLRAFLENEEIGKLVHNGKF-IEVVLKRYGLKFDGVRGDTLLLSYVLDPGFSGETLSE 419 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----VVHLHALRLQFTEKLQRLGRS 177 +L LG + + D V L L EKL Sbjct: 420 HLFHYLGEVVDEK--------------------MDPGLAVRGLKKLHQVLEEKLGSQDLV 459 Query: 178 DLAT-SCCNFLMDRAELDLLG 197 +L A+++ G Sbjct: 460 NLYKVVELPLSPVLADMEFTG 480 >gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish 7] gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7] Length = 230 Score = 38.8 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 27/114 (23%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113 A + + + D K I H FDI L + + + T + +R + Sbjct: 77 ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMAR-SIFP 133 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 +++ L K D S QL A D L + ++ Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVEL 172 >gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B] Length = 832 Score = 38.8 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 294 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 353 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A LS +Q+ YAA + L Sbjct: 354 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 413 Query: 166 QFTEKLQR 173 F +L Sbjct: 414 VFDARLAA 421 >gi|291280806|ref|YP_003497640.1| hypothetical protein DEFDS_P264 [Deferribacter desulfuricans SSM1] gi|290755508|dbj|BAI81884.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 1576 Score = 38.8 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT 103 L E KIFH G FD++ + + + F T Sbjct: 554 LNSENIIKIFHNGTFDVSYIMNKLNISPNEIKVTRYFDT 592 >gi|17568711|ref|NP_510676.1| hypothetical protein K05G3.1 [Caenorhabditis elegans] gi|1109861|gb|AAB52496.1| Hypothetical protein K05G3.1 [Caenorhabditis elegans] Length = 203 Score = 38.8 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 NQ L+ L + I I+K + SDW+ L Q +YA DV+ L L Sbjct: 152 QVNQKSLEALLLKK-EIVITKWETFSDWTRPVLRPSQERYAVYDVIRLFDL 201 >gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] Length = 921 Score = 38.8 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A L+ +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFEARLAA 510 >gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246] gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5] gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str. Rustic] gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246] gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5] gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str. Rustic] Length = 229 Score = 38.8 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 27/114 (23%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113 A + + + D K I H FDI L + + + T + +R + Sbjct: 77 ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMAR-SIFP 133 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 +++ L K D S QL A D L + ++ Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVEL 172 >gi|189209768|ref|XP_001941216.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187977309|gb|EDU43935.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 340 Score = 38.8 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 31/114 (27%) Query: 8 EGDIPAE-CAARYVDAIAVDT---------ETLGLMPRRDRLCIVQLSPGDGTVDI-IRI 56 + ++ A R + +A D E L + ++ ++Q++ D + I Sbjct: 78 DSELAARHFLTRLLPIVAFDMQWAEDDCSKEAL-----QKKVGLIQIATEDKVALFHLGI 132 Query: 57 AAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVLFYTFGVRVRPV 100 G+ + AP+L ++ D K K+ H R L FG+ + + Sbjct: 133 HPGKTSQDIIAPSLKRLIEDPKIAKVGIDIWNGHSSR-----LNRWFGLNPKGI 181 >gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750] gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750] Length = 1465 Score = 38.8 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782] gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782] Length = 1465 Score = 38.8 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|297597578|ref|NP_001044182.2| Os01g0737700 [Oryza sativa Japonica Group] gi|255673666|dbj|BAF06096.2| Os01g0737700 [Oryza sativa Japonica Group] Length = 233 Score = 38.8 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGV 95 + ++Q+ G + +I L L D + + H D+ L + + Sbjct: 97 VAVLQICVG-RRCLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHD---DVDKLREHYDL 152 Query: 96 RVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 V +A++ GL+ + E++ + + K + S W + L+ +Q+ Sbjct: 153 EVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVM 212 Query: 152 YAASD 156 YA +D Sbjct: 213 YACAD 217 >gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria pomeroyi DSS-3] gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria pomeroyi DSS-3] Length = 470 Score = 38.8 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 45/141 (31%), Gaps = 39/141 (27%) Query: 26 DTETLGLMPRRDRLCIVQLS----------PGDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 DTET GL+P +D + VQ+ PG+ ++ A V + D Sbjct: 282 DTETTGLLPHKDEI--VQIGAVRVVKGRIVPGERIDQLVDPGRPIPPASTRVHGVSDAMV 339 Query: 73 ---EKRE--------------KIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLT 110 + H FDIA L G R P+ T + S + Sbjct: 340 AGAPDIVAAARQFHQFARDAVIVAHNAPFDIAFLRRH-GPRCGLDWDHPILDTVLLSAVL 398 Query: 111 RTYTNQHGLKDNLKELLGINI 131 + H L LG+ I Sbjct: 399 FGASETHTLDALCDR-LGVTI 418 >gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. Iowa] gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa] Length = 229 Score = 38.8 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 27/114 (23%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113 A + + + D K I H FDI L + + + T + +R + Sbjct: 77 ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMAR-SIFP 133 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 +++ L K D S QL A D L + ++ Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVEL 172 >gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] Length = 905 Score = 38.8 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 22/162 (13%) Query: 44 LSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102 + DGT + + L L D R+KI H + L Sbjct: 363 FATADGTAAYVDATQLDPADETALAAWLADPARQKILHDAKGPSLALAARGFTLAGVAAD 422 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINI-----SKAQQ--SSDWSADDLSDEQLQYAAS 155 T + + L ++ L+ +E+LG + + Q +D A+ ++ Q+ AA Sbjct: 423 TALEAYLAQSGRRSFDLEPLAEEVLGRRLSPAGADENQGTLFADEDAE--AERQMA-AAH 479 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197 V L KL G A L+ EL L+G Sbjct: 480 AV---LDLADALRGKLAETG----AEQ----LLTDIELPLVG 510 >gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK597] gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK597] Length = 1463 Score = 38.8 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5] Length = 780 Score = 38.8 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A LS +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFDARLAA 510 >gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1] gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1] Length = 504 Score = 38.8 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 16/97 (16%) Query: 88 VLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS-------KAQQS 137 VL V P+F T IA + + +HG+ + L I+I K Q+ Sbjct: 3 VLQNYGAVVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHIDELIGPKGKNQK- 60 Query: 138 SDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173 + DL + + YA D L+ ++L+ Sbjct: 61 ---NMRDLDPKDVYLYACEDADITLKLKNVLEKELKE 94 >gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis substr. CH1] gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus gordonii str. Challis substr. CH1] Length = 1462 Score = 38.8 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 39/147 (26%), Gaps = 37/147 (25%) Query: 14 ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67 + A + D ET GL D ++Q++ G+ + Sbjct: 416 DMALSDATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472 Query: 68 GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99 L E+ K + H FD+ + + +P Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126 V T +R +HGL K Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559 >gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952] gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952] Length = 1445 Score = 38.8 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 8/91 (8%) Query: 54 IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGVRVR--PVFCTKIA 106 + G K+ ++ + E + H FD+ L + +G+ PV T Sbjct: 481 DEMVRGSKSEEEVLRLFREFSEGAVLVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 540 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +R + GL K+ G+++ + ++ Sbjct: 541 ARYLYPEFKRFGLGVLSKKF-GVSLEQHHRA 570 >gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49] Length = 1462 Score = 38.8 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 39/147 (26%), Gaps = 37/147 (25%) Query: 14 ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67 + A + D ET GL D ++Q++ G+ + Sbjct: 416 DMALSDATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472 Query: 68 GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99 L E+ K + H FD+ + + +P Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126 V T +R +HGL K Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559 >gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1463 Score = 38.8 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA] gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA] Length = 1462 Score = 38.8 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 39/147 (26%), Gaps = 37/147 (25%) Query: 14 ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67 + A + D ET GL D ++Q++ G+ + Sbjct: 416 DMALSDATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472 Query: 68 GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99 L E+ K + H FD+ + + +P Sbjct: 473 TDLTGITDEHVRNAKSLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126 V T +R +HGL K Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559 >gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo] gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo] Length = 1465 Score = 38.8 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish] gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish] Length = 605 Score = 38.8 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 12/130 (9%) Query: 12 PAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVG 68 AE AR IA D ET GL + C V + DG++ + + Sbjct: 25 AAERLARTAGFTIATDIETPGLDRAFEINC-VTFAWRWDDGSIHSVLLDPVGNTLHRQAC 83 Query: 69 M-LVDEKREKIFHYGRFDIAVLFYT--FGVRV----RPVFCTKIASRL-TRTYTNQHGLK 120 + L + I H FDI L + FG V T + +R T L Sbjct: 84 IDLYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFALPDVTVSKSLT 143 Query: 121 DNLKELLGIN 130 LG++ Sbjct: 144 ALSIRYLGLS 153 >gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429] gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096] gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429] gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096] Length = 1465 Score = 38.8 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M143] gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus sp. M143] Length = 1463 Score = 38.8 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans] Length = 903 Score = 38.8 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%) Query: 44 LSPGDG-TVDIIRIAAG-QKNAPNLVGMLVDEKREKIFHYG-RFDIAVLFYTFGVRVRPV 100 ++ DG T I Q + L L D +R K H R ++A+ ++ R Sbjct: 360 VAWWDGHTAYFIPFERLVQSDMRPLADWLADARRPKRTHDSHRAEVALFWHGLAFRGTS- 418 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKEL 126 FCT IA+ L ++H L D + Sbjct: 419 FCTHIAAYLLDPTESRHTLADLSRRY 444 >gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296] gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296] Length = 1463 Score = 38.8 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249] gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249] Length = 1463 Score = 38.8 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium] Length = 916 Score = 38.8 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 14/127 (11%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTN 115 L +L DE K+ ++D VL + + + T + S + + Sbjct: 384 LDFDDALLTLKPILQDESINKVGQNLKYDAHVLANY-QIDLNGISDDTMVKSYVLNSVAT 442 Query: 116 QHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQ 166 +H + D L SD ++ Q+ YA DV+ H L Sbjct: 443 RHNMDDLSMHYLNHQ---TIHFSDVAGKGKKQITFNQVGLEAAFPYACEDVIVTHELNKV 499 Query: 167 FTEKLQR 173 E + + Sbjct: 500 LDEDIVQ 506 >gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus] gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus] Length = 605 Score = 38.8 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 12/130 (9%) Query: 12 PAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVG 68 AE AR IA D ET GL + C V + DG++ + + Sbjct: 25 AAERLARTAGFTIATDIETPGLDRAFEINC-VTFAWRWDDGSIHSVLLDPVGNTLHRQAC 83 Query: 69 M-LVDEKREKIFHYGRFDIAVLFYT--FGVRV----RPVFCTKIASRL-TRTYTNQHGLK 120 + L + I H FDI L + FG V T + +R T L Sbjct: 84 IDLYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143 Query: 121 DNLKELLGIN 130 LG++ Sbjct: 144 ALSIRYLGLS 153 >gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315] Length = 921 Score = 38.8 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A L+ +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFEARLAA 510 >gi|262370710|ref|ZP_06064035.1| 3'-5' exonuclease [Acinetobacter johnsonii SH046] gi|262314510|gb|EEY95552.1| 3'-5' exonuclease [Acinetobacter johnsonii SH046] Length = 221 Score = 38.8 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 9/112 (8%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100 ++QL+ + + ++ N L L + + K+ + D A LF G ++ V Sbjct: 72 LIQLASVEH-AYLFQMNPPIWN--FLTPFLANPDQLKVGFGLKND-AHLFRKKGFELKGV 127 Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQ 149 +++ TN G+K+ + L +N K++ +S+W+ L+ EQ Sbjct: 128 --VELSKCFASFGLTNPVGIKNAIALLFQLNFPKSKKVSTSNWARKILTPEQ 177 >gi|125527633|gb|EAY75747.1| hypothetical protein OsI_03660 [Oryza sativa Indica Group] Length = 208 Score = 38.8 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%) Query: 39 LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGV 95 + ++Q+ G + +I L L D + + H D+ L + + Sbjct: 72 VAVLQICVG-RRCLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHD---DVDKLREHYDL 127 Query: 96 RVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151 V +A++ GL+ + E++ + + K + S W + L+ +Q+ Sbjct: 128 EVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVM 187 Query: 152 YAASD 156 YA +D Sbjct: 188 YACAD 192 >gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020] Length = 921 Score = 38.8 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A L+ +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFEARLAA 510 >gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5] gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5] Length = 1463 Score = 38.8 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITYDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 921 Score = 38.8 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A L+ +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFEARLAA 510 >gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037] gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus oralis ATCC 35037] gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037] gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus oralis ATCC 35037] Length = 1463 Score = 38.8 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] Length = 982 Score = 38.8 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114 R+ G ++A L +L + H + + + +P+F TK+A L + Sbjct: 441 RLDPGMRDA--LNVILAQYAPTLVVHGYKEQLHLFASLGVDLPKPLFDTKLAGYLVQPDF 498 Query: 115 NQHGLKDNLKELLGINI-SKAQQSS 138 + L+ L I++ K ++++ Sbjct: 499 HADTLEQAAARFLDIHVEEKTEEAT 523 >gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13] gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40] gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] Length = 921 Score = 38.8 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117 L +L D + K+ + +F I +L G+ ++ V F T + S + + +H Sbjct: 389 LKPLLEDPNKIKVGQHAKFAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRH 448 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171 + + L Q + A L+ +Q+ YAA + L F +L Sbjct: 449 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 508 Query: 172 QR 173 Sbjct: 509 AA 510 >gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] Length = 723 Score = 38.8 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 21/119 (17%) Query: 25 VDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIA---------AGQKNAPNLVGML-- 70 +D ET GL D L C+ D + GQ ++ Sbjct: 88 LDVETTGLDIYNDILVGICL---YNPDLPSAYVPFNHTDLQNRRVEGQMTEEECKAVMLP 144 Query: 71 --VDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 ++ + I H +FD ++ + +G R+ V + T IAS + +HGLK + Sbjct: 145 YLANKDLKCINHNIKFDDKMITFNWGQRIANVWWDTNIASWVLN-ENEKHGLKPLYNKY 202 >gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 885 Score = 38.8 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 + + + II+I + + DE EK+ H + D+ L F + ++ Sbjct: 341 IAIKVQNEATCIIKIDCKEDIL-KFKDVFEDENIEKLGHNLKEDMITLLN-FDINIKNYT 398 Query: 102 -CTKIASRLT 110 ++IA + Sbjct: 399 HDSEIAEYIL 408 >gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278] gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278] Length = 1034 Score = 38.8 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 22/143 (15%) Query: 10 DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61 ++ A A A + VD + + P + LC + L+ G I +A Q Sbjct: 431 ELKAFLARAHEFGRVTVDVKASSIDPMQANLCGLSLALAPGEACYIPLAHRQAGDGGGLF 490 Query: 62 ---NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 AP+ L +L KI + +F +AVL G+ ++ V + S Sbjct: 491 DAGLAPDQIKESEALAALKPVLESTGLLKIGYNIKF-LAVLLAQHGITLQNVDDILLMSY 549 Query: 109 LTRTYTNQHGLKDNLKELLGINI 131 H L + +L I Sbjct: 550 ALDAGRGSHKLDSLAEHVLAHAI 572 >gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 921 Score = 38.8 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117 L +L D + K+ + +F I +L G+ ++ V F T + S + + +H Sbjct: 389 LKPLLEDPNKIKVGQHAKFAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRH 448 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171 + + L Q + A L+ +Q+ YAA + L F +L Sbjct: 449 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 508 Query: 172 QR 173 Sbjct: 509 AA 510 >gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus downei F0415] gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus downei F0415] Length = 1468 Score = 38.8 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 11/83 (13%) Query: 60 QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRL 109 K+A L+ +L + + + H FD+ + + + +PV T +R Sbjct: 489 LKDAKPLLQVLEEFQEFCQDTVLVAHNATFDVGFMNANYERHDLPLISQPVIDTLEFARN 548 Query: 110 TRTYTNQHGLKDNLKELLGINIS 132 +HGL K + + Sbjct: 549 LYPEYKRHGLGPLTKRF-QVALD 570 >gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer] gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer] Length = 605 Score = 38.8 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 12/130 (9%) Query: 12 PAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVG 68 AE AR IA D ET GL + C V + DG++ + + Sbjct: 25 AAERLARTAGFTIATDIETPGLDRAFEINC-VTFAWRWDDGSIHSVLLDPVGNTLHRQAC 83 Query: 69 M-LVDEKREKIFHYGRFDIAVLFYT--FGVRV----RPVFCTKIASRL-TRTYTNQHGLK 120 + L + I H FDI L + FG V T + +R T L Sbjct: 84 IDLYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143 Query: 121 DNLKELLGIN 130 LG++ Sbjct: 144 ALSIRYLGLS 153 >gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1402 Score = 38.8 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 64/208 (30%), Gaps = 57/208 (27%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLS-----------------PGDGTVDIIRIAAGQ---- 60 + VD ET G ++DR+ +++ +G + IRI+ Sbjct: 390 FVVVDIETTGFDNQKDRI--IEIGAVKIENGEIVDRFSTFVDPEGKI-PIRISELTGIYQ 446 Query: 61 ---KNAPNL------VGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIAS 107 NAP L + H +FDI L + G+ T S Sbjct: 447 NMVDNAPKLSDAILEFEKFCSGAIL-VAHNAQFDIGFLKRSYQECGLIFDYTYIDTLELS 505 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 R T + H L + E L I + K +D SD + + Sbjct: 506 RRVLTDLSSHKLNK-VAEFLNIEL-KHHHRAD---------------SDAETTAKIFISL 548 Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195 EKL+ G N + + DL Sbjct: 549 IEKLKSRGYK--YLKELNTIETNTKADL 574 >gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1] Length = 924 Score = 38.8 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 28/113 (24%) Query: 21 DAIAVDTETLGLMPR------------------RDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + +D ET+ P + ++ + LS G I + + Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266 Query: 63 AP---------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKI 105 L +L E E I H G+FDI L + + + ++ T + Sbjct: 267 MKGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIWDTML 319 >gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom phytoplasma AYWB] gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom phytoplasma AYWB] Length = 1572 Score = 38.8 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 60/200 (30%), Gaps = 55/200 (27%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIR--- 55 E ++ + + + D ET GL RD++ ++++ G+ I Sbjct: 467 EDNLEKDFVLKEATYVVFDLETTGLSNVRDKI--IEIAGIKIKNGNKIGEFQKFIDPQQK 524 Query: 56 IAAGQKNAPNLVGMLV----------------DEKREKIFHYGRFDIAVLFYTFG----- 94 + N N+ ++ + + H FD+ L Sbjct: 525 LTKTITNITNITDEMLQGQQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKIS 584 Query: 95 VRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDLSDEQLQY 152 + +P+ T S+ R ++N L + + + + Sbjct: 585 LEPKPIIDTMALSQ--RYFSNLLKYFSLKRLATVFKVKLEDHHR---------------- 626 Query: 153 AASDVVHLHALRLQFTEKLQ 172 A +D + ++ ++L Sbjct: 627 ALADATATSEIFIKMIDQLA 646 >gi|317051112|ref|YP_004112228.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5] gi|316946196|gb|ADU65672.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5] Length = 169 Score = 38.8 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 51/184 (27%), Gaps = 53/184 (28%) Query: 22 AIAVDTETLGLMPRR------------------DRLC-IVQL----SPGDGTVDII---- 54 +A+D ET GL P R C ++Q+ S V I Sbjct: 4 FVAIDVETTGLSPARGARVIEIAAVKMEQGQVIAEFCSLIQVGVPVSAATTGVHGITTAM 63 Query: 55 ---RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTFGVRVRPVFCTKIAS 107 + A G+ P + + + H FD+ L P CT Sbjct: 64 LAGQPAPGEI-WPQFIWFIEHHPI--VAHNAPFDMRFVHSELQRLGLSMANPSHCTLRLG 120 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDE-QLQYAASDVVHLHALRLQ 166 R H L+ + +LG L E QL A D + + Sbjct: 121 RRKYPRLPNHKLEYLAQHVLGK---------------LPPEIQLHRALGDARLTAMVWEE 165 Query: 167 FTEK 170 + Sbjct: 166 MRRE 169 >gi|331013568|gb|EGH93624.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 443 Score = 38.8 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 117 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 176 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A L+ +Q+ YAA + L Sbjct: 177 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 236 Query: 166 QFTEKLQR 173 F +L Sbjct: 237 VFEARLAA 244 >gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091] Length = 921 Score = 38.8 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117 L +L D + K+ + +F I +L G+ ++ V F T + S + + +H Sbjct: 389 LKPLLEDPNKIKVGQHAKFAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRH 448 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171 + + L Q + A L+ +Q+ YAA + L F +L Sbjct: 449 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 508 Query: 172 QR 173 Sbjct: 509 AA 510 >gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] Length = 925 Score = 38.8 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117 L +L D + K+ + +F I +L G+ ++ V F T + S + + +H Sbjct: 393 LKPLLEDPNKIKVGQHAKFAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRH 452 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171 + + L Q + A L+ +Q+ YAA + L F +L Sbjct: 453 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 512 Query: 172 QR 173 Sbjct: 513 AA 514 >gi|148724470|ref|YP_001285436.1| DNA polymerase [Cyanophage Syn5] gi|145588115|gb|ABP87934.1| DNA polymerase [Synechococcus phage Syn5] Length = 583 Score = 38.8 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 40/147 (27%) Query: 83 RFDIAVLFYTFGVRVRP--VFCTKIASRL-----------------TRTYTNQHGLKDNL 123 +DI + + ++ T I SRL +H L+ Sbjct: 60 GYDIEAIKELYPKWTTKAKLYDTLILSRLFFTDLLDRDFRSKPANMPGNLYGRHSLEAWG 119 Query: 124 KEL------LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177 L G + DWS S E L+Y A DV + F KL++ Sbjct: 120 HRLGVHKSEFGKQLDG-----DWST--YSPEMLEYCAQDVTVSVQVAQMFEPKLEQ---- 168 Query: 178 DLATSCCNFLMDRAELDLLGWENVDIF 204 C + A ++ W+ + F Sbjct: 169 --YADCIDTEHRLAT--IMAWQEREGF 191 >gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7] Length = 921 Score = 38.8 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111 L +L D ++ K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPEKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A LS +Q+ YAA + L Sbjct: 443 STAPRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFDARLAA 510 >gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031] gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae P1031] Length = 1463 Score = 38.8 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 44/159 (27%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAGQK 61 E D+ + D ET GL D ++Q++ G+ + Sbjct: 417 ERDLSE------ATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGY 467 Query: 62 ------------------NAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTF 93 NA L +L + + + H FD+ + + Sbjct: 468 PLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGL 527 Query: 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +PV T +R +HGL K G+ + Sbjct: 528 PKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase Length = 924 Score = 38.8 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 28/113 (24%) Query: 21 DAIAVDTETLGLMPR------------------RDRLCIVQLSPGDGTVDIIRIAAGQKN 62 + +D ET+ P + ++ + LS G I + + Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266 Query: 63 AP---------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKI 105 L +L E E I H G+FDI L + + + ++ T + Sbjct: 267 MKGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIWDTML 319 >gi|307197463|gb|EFN78697.1| Probable exonuclease mut-7-like protein [Harpegnathos saltator] Length = 1058 Score = 38.8 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 38/96 (39%), Gaps = 12/96 (12%) Query: 5 RVHEGDIPAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDG--TVDIIRIAA 58 R+ E + + ++ + +D+E + ++ L ++QL+ + +D+I + Sbjct: 406 RLFEEFLDNGL--KGINMVGIDSEWKPSFV---TKQSELALIQLATNENVYILDVITLNE 460 Query: 59 GQKNAPNL-VGMLVDEKREKIFHYGRFDIAVLFYTF 93 L + + ++ KI D+ V+ Sbjct: 461 LHDLWSELGLTLFGNQDIIKIGFGIAHDMTVIRKNL 496 >gi|156095159|ref|XP_001613615.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148802489|gb|EDL43888.1| hypothetical protein, conserved [Plasmodium vivax] Length = 1943 Score = 38.8 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 19/44 (43%) Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++K Q +W+ LS ++YA DV+ L KL Sbjct: 1892 DKEVNKECQIMNWNFRPLSSISVEYAILDVLILKNFFNLIQSKL 1935 >gi|330872927|gb|EGH07076.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 601 Score = 38.8 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A L+ +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFEARLAA 510 >gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 919 Score = 38.8 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 9/91 (9%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101 + G+G I A + L L D K H + D+A G + V Sbjct: 377 ADGEGR-YIDTSALDPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWTLAGVT 431 Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +A+ L R L D L + Sbjct: 432 SDTALAAYLVRPGQRSFSLDDLALRYLRREL 462 >gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a] gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a] Length = 921 Score = 38.8 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A LS +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFDARLAA 510 >gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 921 Score = 38.8 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117 L +L D + K+ + +F I +L G+ ++ V F T + S + + +H Sbjct: 389 LKPLLEDPNKIKVGQHAKFAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRH 448 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171 + + L Q + A L+ +Q+ YAA + L F +L Sbjct: 449 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 508 Query: 172 QR 173 Sbjct: 509 AA 510 >gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6] gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae Hungary19A-6] Length = 1463 Score = 38.8 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 47/159 (29%), Gaps = 44/159 (27%) Query: 8 EGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-- 59 E D+ + D ET GL D ++Q++ G+ + Sbjct: 417 ERDLSE------ATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGH 467 Query: 60 ----------------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTF 93 KNA L +L + + + H FD+ + + Sbjct: 468 PLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGL 527 Query: 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +PV T +R +HGL K G+ + Sbjct: 528 PKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|323454044|gb|EGB09915.1| hypothetical protein AURANDRAFT_71263 [Aureococcus anophagefferens] Length = 1717 Score = 38.4 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 32/162 (19%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLV 67 D AE A D +A+D E L ++Q+ V ++ G ++ Sbjct: 1203 DAWAEFWADAPDVVAIDAE---GTHFTPPL-LLQICARGPRRRVLLVAPT-GDALGGDVA 1257 Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK---IASRLTRTYTNQHGLKDNLK 124 +L D K+F G + + +A+ T Q GL Sbjct: 1258 RLLGDASITKVFFGPPS-----REHLGAAIANAVDAQAFEVAA--TGYVGKQRGLAAVAG 1310 Query: 125 ELLGINI---SKAQQSSD--WSADD----------LSDEQLQ 151 + L K Q S + + LS EQ Sbjct: 1311 DALRRAPFAKRKDLQRSFGFYRSRPQFGLSHSRHWLSPEQRA 1352 >gi|225440183|ref|XP_002278250.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 213 Score = 38.4 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 11/142 (7%) Query: 23 IAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + +D E ++ +QL G + I ++ +L L + + Sbjct: 59 VGLDVE--WRPSFNPQIENPVATLQLCVG-RSCLIFQLLHAPAIPASLNAFLRNPGYTFV 115 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCT-KIASR-LTRTYTNQHGLKDNLKELLGINISK--A 134 D+ L G+ V +A+ L + GLK E+LG + K Sbjct: 116 GVGIDDDLEKLVGDHGLGVSNAVDLRGLAAHELNKMELRNAGLKRLGLEVLGKEVQKPRR 175 Query: 135 QQSSDWSADDLSDEQLQYAASD 156 S W LS +Q+QYA D Sbjct: 176 VTLSRWDNFYLSTDQVQYACVD 197 >gi|90408651|ref|ZP_01216804.1| hypothetical protein PCNPT3_09539 [Psychromonas sp. CNPT3] gi|90310258|gb|EAS38390.1| hypothetical protein PCNPT3_09539 [Psychromonas sp. CNPT3] Length = 49 Score = 38.4 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 6/25 (24%), Positives = 13/25 (52%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS 45 +++DTE + L ++Q+S Sbjct: 22 SPLSLDTEFVRTRTYVANLGLLQIS 46 >gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM 2522] Length = 1434 Score = 38.4 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 15/100 (15%) Query: 52 DIIRIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRV 97 II + + AP + +L D + H FD+ + F G Sbjct: 467 LIIDLTGITDDMVENAPEVDDVLKDFHEWIGDATLVAHNASFDMGFINAGFQKIGYGHAT 526 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T RL + L K+ I + ++ Sbjct: 527 NPVIDTLELGRLLYPTFKNYRLNTLCKKF-NIELVAHHRA 565 >gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291] Length = 913 Score = 38.4 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 9/91 (9%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101 + G+G I A + L L D K H + D+A G + V Sbjct: 371 ADGEGR-YIDTSALDPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWTLAGVT 425 Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +A+ L R L D L + Sbjct: 426 SDTALAAYLVRPGQRSFSLDDLALRYLRREL 456 >gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104] gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104] Length = 913 Score = 38.4 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 9/91 (9%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101 + G+G I A + L L D K H + D+A G + V Sbjct: 371 ADGEGR-YIDTSALDPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWTLAGVT 425 Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +A+ L R L D L + Sbjct: 426 SDTALAAYLVRPGQRSFSLDDLALRYLRREL 456 >gi|330720339|gb|EGG98679.1| Ribonuclease D [gamma proteobacterium IMCC2047] Length = 219 Score = 38.4 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 13/34 (38%) Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192 +L L Q LQ GR A ++++ Sbjct: 3 YLIELYEQQVAALQDKGRLSWAQEEMQVMLNKQR 36 >gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera] Length = 1118 Score = 38.4 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 51/179 (28%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL 109 VD++ G+ D +K++H FD V+ ++V T +RL Sbjct: 403 VDVLD-GGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY-DLKVSGFHADTMHMARL 460 Query: 110 ---TRTYTNQHGLKDNL--------------KELLG----------INISKA-------- 134 +R + L+ +EL+G + K Sbjct: 461 WDSSRRAVGGYSLEALTRDSKVMSGAHMSNGEELIGKVSMKTIFGKKKLKKDGTEGKIIT 520 Query: 135 ------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK-LQRLGRSDLATSCCNF 186 Q D + Y+A D + L K L + D A C F Sbjct: 521 IAPVEVLQRED--RKP----WISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMF 573 >gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1034 Score = 38.4 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 51/179 (28%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL 109 VD++ G+ D +K++H FD V+ ++V T +RL Sbjct: 319 VDVLD-GGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY-DLKVSGFHADTMHMARL 376 Query: 110 ---TRTYTNQHGLKDNL--------------KELLG----------INISKA-------- 134 +R + L+ +EL+G + K Sbjct: 377 WDSSRRAVGGYSLEALTRDSKVMSGAHMSNGEELIGKVSMKTIFGKKKLKKDGTEGKIIT 436 Query: 135 ------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK-LQRLGRSDLATSCCNF 186 Q D + Y+A D + L K L + D A C F Sbjct: 437 IAPVEVLQRED--RKP----WISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMF 489 >gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg] Length = 1527 Score = 38.4 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 21/108 (19%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H FDI + P+ T +R+ + N L + + L I++ Sbjct: 579 VAHNASFDIGFITKKAEFLNIPLTVTSVDTVGLARVLLNHLNNFKLDT-VAKALSISLEN 637 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 + A D + L+F E L+ G LA Sbjct: 638 HHR----------------AVDDAGCTAEIYLKFLEMLRERGIETLAQ 669 >gi|29566249|ref|NP_817817.1| gp56 [Mycobacterium phage Rosebush] gi|29424974|gb|AAN01898.1| gp56 [Mycobacterium phage Rosebush] Length = 609 Score = 38.4 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 15/106 (14%) Query: 22 AIAVDTETLGLMPRRDRLCI----VQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEKR 75 +A D ET GL + C+ + DGT+ ++ + + + Sbjct: 42 PVAADIETPGLDRNFEINCLTAAWI---GWDGTIESVLLDPIRWPAHRAAARDVFARASK 98 Query: 76 EKIFHYGRFDIAVLFYTFGV---RVRPVFCTKIASRLTRTYTNQHG 118 +FH FD+ L++ + +R + T + +R Y + +G Sbjct: 99 L-VFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFA--YPDSYG 141 >gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB] gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB] Length = 901 Score = 38.4 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 20/148 (13%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123 P L L D+K + H + + VL P+ T +A+ + + L + + Sbjct: 376 PVLFPFLADKKIALVGHDLKTVLIVLSQKGVKVQNPLLDTMVAAYILNPARRGYELSEIV 435 Query: 124 KELLGINIS------------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170 ++ L + K +S E+L +A V + L EK Sbjct: 436 QDYLHRQVEPLRKKLVGGSSPKQSPAS------FPPERLRDFACRRVEAIGELASTLIEK 489 Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLG 197 ++ G +L S + A ++ G Sbjct: 490 MEETGLRELFDSVEMPLVAVLAAMEEKG 517 >gi|213423791|ref|ZP_03356771.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 304 Score = 38.4 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 10/79 (12%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + A DTET L L + + G + +A +AP+ L Sbjct: 225 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 284 Query: 67 VGMLVDEKREKIFHYGRFD 85 +L DEK K+ ++D Sbjct: 285 KPLLEDEKVRKVGQNLKYD 303 >gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c] gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c] Length = 971 Score = 38.4 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 9/103 (8%) Query: 42 VQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRV 97 + L+P G I + L G L D + K H D+ + G + Sbjct: 422 IALAPPKGKAAWIDPTQLTPADEQALAGWLADPAKPKAAH----DVKGPMLALAELGFTL 477 Query: 98 RPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 V T +A+ L L D + L + + SD Sbjct: 478 AGVTSDTALAAYLALPGQRSFDLGDLVLRYLHRELKADEAPSD 520 >gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] Length = 921 Score = 38.4 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCAIGGDQAHGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q + A L+ +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPVNFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFETRLAA 510 >gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1] gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum reducens MI-1] Length = 1426 Score = 38.4 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 8/90 (8%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRL 109 G++ L + E + H FD++ L ++ P T +R+ Sbjct: 475 DAPDGKEALTALSEFMG-EAVL-VAHNASFDLSFLRVGLRKYLKQEVTNPAIDTLGVARV 532 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H L +KE I ++ ++ D Sbjct: 533 LFPNLKNHKLNTLVKEF-KIELTNHHRAVD 561 >gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] Length = 955 Score = 38.4 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 8/93 (8%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105 + I+ + L L E I H + L + G P+F TK+ Sbjct: 411 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 466 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 A LT+ + LK + L ++ ++ +Q S Sbjct: 467 AGYLTQPDFHADSLKQAAEHFLDLHFTETEQPS 499 >gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149] gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149] Length = 902 Score = 38.4 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 23/79 (29%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 + + + L L D R K+ H + T++A+ L R Sbjct: 367 LDPAELAESDERALAAWLADPARPKVLHDSKHARLAFAARGWSLAGVARDTELAAYLARP 426 Query: 113 YTNQHGLKDNLKELLGINI 131 + L D L + Sbjct: 427 DQRSYDLTDLALRYLHREL 445 >gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1465 Score = 38.4 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHNLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1440 Score = 38.4 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 35/140 (25%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPG--------DGTVDIIRIAAGQK---------- 61 + + DTET GL R D +++++ D +I Sbjct: 425 TEYVVFDTETTGLNARED--TLIEIAAVKVKAGQIVDTYATLIDPERSLDPKIVELTGIT 482 Query: 62 -----NAPNLVGMLV-----DEKREKIFHYGRFDIAVLFY---TFGVRV--RPVFCTKIA 106 P L L + H FD+ L G+ +PV T Sbjct: 483 NEMVAGQPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVIDTLAL 542 Query: 107 SRLTRTYTNQHGLKDNLKEL 126 +R+ + LK ++ Sbjct: 543 ARVLYPGEKNYKLKTLTQKF 562 >gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea thermophila UNI-1] gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea thermophila UNI-1] Length = 934 Score = 38.4 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 47/177 (26%) Query: 22 AIAVDTETLGLMPRRDRLCIVQL-----SPGDGTVDIIRIAAGQKNAPNLVGMLV---DE 73 +A+D ET GL P +D CI+++ S + + KN P+ + L ++ Sbjct: 7 YVAIDIETTGLDPEKD--CIIEIGAVRFSNRRVEAEWSSLIKPTKNIPSFITQLTGITND 64 Query: 74 KREK--------------------IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 K + H RFD++ L + V T + + Sbjct: 65 MVRKAPTIQDVIGDLAHFVGNCPIVGHNIRFDLSFLQKQHILWNNHVIDTYELASVLLPT 124 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +++ L + LGI + + A D HAL + EK Sbjct: 125 ASRYNLGVLAQS-LGILLPATHR----------------ALDDARVTHALFIALLEK 164 >gi|294496412|ref|YP_003542905.1| hypothetical protein Mmah_1765 [Methanohalophilus mahii DSM 5219] gi|292667411|gb|ADE37260.1| conserved hypothetical protein [Methanohalophilus mahii DSM 5219] Length = 254 Score = 38.4 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 13/116 (11%) Query: 19 YVDAIA-VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + D++A VD ET GL P ++ ++ + G +R N +V + Sbjct: 83 FSDSVAYVDIETTGLSPSSSKITVIGVYDGKDVKSFVR----GINLEEIVQEMEQYDFLV 138 Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK---DNLKELLGIN 130 F+ RFD+ + F + + GLK N++ LLGIN Sbjct: 139 TFNGARFDLPFIQREFPQITM-----EQMHTDLMYPLRRIGLKGGLKNIEHLLGIN 189 >gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila] gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210] Length = 988 Score = 38.4 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 4/77 (5%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 I A L D + +KI+H FD + + G+ V+ T +RL Sbjct: 137 IDNFAQNTDLIQIFKEYLEDSRYKKIWHNYGFDRHIFYNH-GINVQGFGGDTMHLARLAD 195 Query: 112 T--YTNQHGLKDNLKEL 126 ++ L + K Sbjct: 196 PSRGPKEYSLANVTKHY 212 >gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862] Length = 1440 Score = 38.4 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 36/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIRIAAGQKN 62 P + + D ET GL D+ +++LS + + I + Sbjct: 414 PDHTKLDEAEFVVFDVETTGLSAVYDK--VIELSAVKMVKGNVIAEFSEFIDPGFPLSQT 471 Query: 63 APNLVGMLVD----EKREK---------------IFHYGRFDIAVLF-----YTFGVRVR 98 +L + D K EK + H FD+ + + Sbjct: 472 TVDLTSITDDMVRGSKPEKQVFEEFREFYGDAVLVGHNVTFDMGFMQEGYARHQLAPITN 531 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T I +R + L K GI + + ++ Sbjct: 532 PVIDTLILARFLYPNMRSYRLNTLAKHF-GIVLEQHHRA 569 >gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT] Length = 822 Score = 38.4 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 284 DTVLKALKPLLEDPDKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 343 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A LS +Q+ YAA + L Sbjct: 344 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 403 Query: 166 QFTEKLQR 173 F +L Sbjct: 404 VFDARLAA 411 >gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM 6578] Length = 198 Score = 38.4 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 63/192 (32%), Gaps = 48/192 (25%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRR----DRLCIVQLSPGDGTV---DI 53 M+T D P R +A D ET GL P R + C V+ G+ + Sbjct: 1 MSTSTDPGRD-PVSIDWRKEVVVAFDLETTGLDPVRHSVVEIAC-VKFQGGEPRAFFSLL 58 Query: 54 IRIAAGQK---------------NAPNL---VGMLVD--EKREKIFHYGRFDIAVL---F 90 ++ AP L + ML + H FD++ L + Sbjct: 59 VKPPHPIPAEVTKIHGIGDQDVEEAPPLPSVLPMLESFVGTHLLVAHNAPFDLSFLRIEY 118 Query: 91 YTFGVRVRPVF---CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSD 147 G R P F T++ +R + ++ L + L I + + LSD Sbjct: 119 ARCG-RPYPGFRAIDTRLLARSVLPHLGRYSLASLTRA-LDIPLQQHH-------RALSD 169 Query: 148 EQ----LQYAAS 155 L YA + Sbjct: 170 AWACGDLFYALA 181 >gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1465 Score = 38.4 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHNLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL] gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis OL] Length = 1402 Score = 38.4 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 24/148 (16%) Query: 52 DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIAS 107 D++ A ++A + H +FDI L + G+ T S Sbjct: 447 DMVDKAPKLRDAILEFEKFASGSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 R T + H L + E L + + + A SD + Sbjct: 506 RRLLTGLSSHKLNK-VAEFLNVELRHHHR----------------ADSDAETTAGIFTSL 548 Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195 E+L+ G N + A+ DL Sbjct: 549 MERLKVRG-YKWLK-ELNSIESNAKADL 574 >gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK321] gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus mitis SK321] Length = 1463 Score = 38.4 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPRISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15] gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15] Length = 1431 Score = 38.4 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 47/160 (29%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68 P + + D ET GL ++ L V++ GD I + A L Sbjct: 404 PVDQELEKATFVVFDVETTGLSAMYNKIIELAAVKIYDGD---VIDKFEAFADPKHLLSA 460 Query: 69 MLVD---------------EKREK-----------IFHYGRFDIAVLFYTF-----GVRV 97 +D E+ K + H FDI L T Sbjct: 461 TTIDLTGITDEMVRGKPDPEQVVKEFMDWAGGSILVAHNASFDIGFLNATLRSGNHEEST 520 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T +R+ H L K I +++ ++ Sbjct: 521 LPVIDTLELARVLMPSLKNHRLNTLAKRF-DIELTQHHRA 559 >gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b] gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b] Length = 1430 Score = 38.4 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 34/158 (21%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGT------VDI--------- 53 + A + D ET GL ++ L V++ G+ D Sbjct: 400 ATDVALEDATYVVFDVETTGLSAVYNKIIELAGVKIKDGEIIDRFEAFADPKHALSATTI 459 Query: 54 ------IRIAAGQKNAPNLVGMLVD---EKREKIFHYGRFDIAVL---FYTFGVRVR--P 99 + GQ + + VD + + H FD+ L + G P Sbjct: 460 ELTGITDDMVQGQPDPEVITKRFVDWCGDSIL-VAHNASFDMGFLEATLRSGGHEPDDYP 518 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T +R H L K I +++ ++ Sbjct: 519 VIDTLELARTLMPTLKNHRLNTLAKRF-DIELTQHHRA 555 >gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2] gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2] Length = 625 Score = 38.4 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 9/116 (7%) Query: 23 IAVDTETLGLMPRRDRLCIVQL-SPGDGTVD--IIRIAAGQKNAPNLVGMLVDEKREKIF 79 +A D ET GL+ + D C+ GDG V ++ + + + + I Sbjct: 37 VATDIETPGLLRQFDINCVTAAWRHGDGRVHSVLLDPDRTPHHDEAVREIYDSAEVI-IL 95 Query: 80 HYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQH-GLKDNLKELLGIN 130 G FD+ L ++ + + T + +R+ T + L +K LG+ Sbjct: 96 QNGVFDLPALLHSGLITPEQIREKFLDTLLPARMIDTSSPMARSLTMLVKRHLGVE 151 >gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] Length = 907 Score = 38.4 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 24/151 (15%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------AAGQKNAPNLVGMLV---DE 73 +A DTET GL ++L S D + A Q + + + Sbjct: 339 VAFDTETTGLDYINNKLVGFSFSFNDEEAYYVPFGHFYLGVADQVSKDVAKQAMRRIFNS 398 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINI- 131 K + H +FD+ + + PV+ + I + L + L +LLG + Sbjct: 399 KV--VGHNIKFDLHFVTRFLEEKDLPVYCDSMILAWLINPES-ALSLDKLSDKLLGHEMV 455 Query: 132 ------SKAQQSSDWSADDLSDEQLQYAASD 156 K + ++S +L D YAA D Sbjct: 456 HFKDTVKKGE---NFSTVELDDA-CVYAAED 482 >gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] Length = 855 Score = 38.4 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 24/109 (22%) Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKE 125 ++ E +KI Y + D+ + +++ VF +AS L H L ++E Sbjct: 363 KDIISFENIKKIGAYIQRDL----HFLDCKIKGEVFDVSLASYLLNPERQNHSLDILIRE 418 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L + + + + YAA +L L+ E++++ Sbjct: 419 YLN--------RTSF----IPQK---YAA----YLFPLKTILEERIKKE 448 >gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium cf. saccharolyticum K10] Length = 1037 Score = 38.4 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 7/87 (8%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRT 112 ++ P + D + H FD++ + + G P V T +R Sbjct: 260 PKIEEVLPKFLEFCSDA--VMVAHNASFDMSFIRHNAMIQGKSFEPTVLDTVSMARFLLP 317 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139 N+ L KE L I++ ++ D Sbjct: 318 NLNRFKLDTVAKE-LRISLENHHRAVD 343 >gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1] gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1] Length = 917 Score = 38.4 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 16/136 (11%) Query: 14 ECAARYVDAIAV---DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65 + +DA A+ DTET L P ++ + L G+ + +A +AP Sbjct: 330 DAWLAKIDAAALTSFDTETTSLDPMVAQIVGLSLCTEPGSAAYVPVAHRGPDAPEQLPRD 389 Query: 66 -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119 L L + R+K+ + ++D VL + + V T + S + ++ H + Sbjct: 390 EVLAKLKPWLENPARKKVGQHLKYDAQVLANY-DIALNGVEHDTLLESYVLESHRT-HDM 447 Query: 120 KDNLKELLGINISKAQ 135 LG+ K + Sbjct: 448 DSLALRHLGVKTIKYE 463 >gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233] gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233] Length = 902 Score = 38.4 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 8/76 (10%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQHGLKD 121 L D K+ H D+ R PV T +A+ L L D Sbjct: 377 LAAWFADPTPTKVGH----DLKTAVNALTARGWPVGGVACDTALAAYLALPGQQTFDLGD 432 Query: 122 NLKELLGINISKAQQS 137 ++ L + + Sbjct: 433 LVQRYLHRTLDPEHST 448 >gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82] Length = 975 Score = 38.4 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101 + DG V++ I AG L + + FH FD VL Y PV Sbjct: 37 AINDGPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 96 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 T + + L G L E+LG+ K Sbjct: 97 DTMVQA-LAHGLPGSLG---ELCEILGVPQDK 124 >gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84] gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84] Length = 236 Score = 38.4 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 35/142 (24%) Query: 44 LSPGDGTVDIIRIA------AGQKNAPNLVGMLVDE------KREKIFHYGRFDIAVLFY 91 ++PGD V +A K+ P + DE + I H FD+ + Sbjct: 42 INPGDRKVHPDALAVHGITDESLKDKPPFADV-ADEILAFFEGAKWIAHNATFDMGFVNA 100 Query: 92 TFG------VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDL 145 F + V T +R L + I + ++ Sbjct: 101 EFNRLGRPPILPDMVIDTLAMARRKHPMGPN-SLDALCRRY---GIDNSHRT-------- 148 Query: 146 SDEQLQYAASDVVHLHALRLQF 167 A D L + ++ Sbjct: 149 ----RHGALLDSELLAEVYIEM 166 >gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille] gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille] Length = 912 Score = 38.4 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 27/164 (16%) Query: 25 VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGMLVDEK 74 +DTET L+P + +L + L G I +A ++ P + L D Sbjct: 339 IDTETTSLIPMQAQLVGISLCCEPGVAAYIPVAHHYQDVPQQLSRELVLEKMKPWLEDAS 398 Query: 75 REKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY----TNQHGLKDN------L 123 + K+ ++D + GV +R + T + S + ++ + L+ Sbjct: 399 KAKVGQNLKYDSHIFANH-GVNLRGIVHDTLLESYVFESHRSHDMDSLALRHLNRKTITF 457 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 +E+ G K + ++ +YAA D L + Sbjct: 458 QEVCG----KGASQIGFEQVEIGRA-TEYAAEDADITLQLHQRM 496 >gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69] gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69] Length = 1113 Score = 38.4 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNAAFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium azorense Az-Fu1] Length = 205 Score = 38.4 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 24/131 (18%) Query: 46 PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL----FYTFGVRVR-PV 100 G ++ ++ P + + + H +FD++ L + G ++ PV Sbjct: 64 TGITNALVVDKPTIEEVFPQFLKFSENSII--VAHNAQFDMSFLNSVSYQITGRSIQNPV 121 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 CT+ ++ L + I +K + A D + Sbjct: 122 LCTQNLAKRLFPDLPSKSLVNLAYHF-NIPYNKKHR----------------ALEDALVT 164 Query: 161 HALRLQFTEKL 171 + L + + L Sbjct: 165 YELFKKIIDYL 175 >gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS] gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS] Length = 929 Score = 38.4 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 9/91 (9%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101 + GDG I + + L L D K H + D+A G ++ V Sbjct: 378 ADGDGR-YIDTTSLDPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWKLAGVT 432 Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +A+ L R L D L + Sbjct: 433 SDTALAAYLVRPGQRSFSLDDLSLRYLRREL 463 >gi|167388255|ref|XP_001738490.1| 3-5 exonuclease [Entamoeba dispar SAW760] gi|165898251|gb|EDR25173.1| 3-5 exonuclease, putative [Entamoeba dispar SAW760] Length = 170 Score = 38.4 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 8/140 (5%) Query: 19 YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78 + D E + P +QLS ++ + ++ L+ +L ++ KI Sbjct: 26 KSSYVGFDVEYVDKTP-----ATIQLSSP-TEAFVLHVFHYKELPKTLIQLLENDGIIKI 79 Query: 79 FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 + D+ + + + + L + G+ ++LLG K + Sbjct: 80 GVGVKDDLKKIDDKYKTHCQGGLDIGWTAYLIGAISEYRGIDYLGEKLLGEK--KLGGFA 137 Query: 139 DWSADDLSDEQLQYAASDVV 158 W L +Q+ YAA D Sbjct: 138 TWGIGRLEKKQIDYAAKDAW 157 >gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease [Magnetospirillum magneticum AMB-1] Length = 257 Score = 38.4 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 32/122 (26%), Gaps = 27/122 (22%) Query: 57 AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---FYTFGVRVRPV---FCTKI 105 A + P ++ D + H FD+ + G P+ T + Sbjct: 88 ADFLSDKPLFAEIVADFLEFIGDVPLVIHNAEFDMRFINAELTRLGFPPLPMSRSIDTVM 147 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 +R R Q L + I ++ A D L + L Sbjct: 148 MARK-RFPGAQANLDALCRRF---EIDNTHRT------------KHGALLDSELLAEVYL 191 Query: 166 QF 167 Q Sbjct: 192 QL 193 >gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99] gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99] Length = 240 Score = 38.4 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 25/102 (24%) Query: 76 EKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 E + H FDI+ + + FG+ + + T ++ ++ L K Sbjct: 97 EVVAHNASFDISFMDHEFGLLQPKGPKTADICAILDTLAIAKFLHP-GQKNNLDALCKRY 155 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 GI D S +L A D L + L T Sbjct: 156 -GI---------DNSRREL-----HGALLDAEILADVYLLMT 182 >gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes] Length = 1465 Score = 38.4 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + +PV T +R +HGL K +++ Sbjct: 509 VAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250] gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 921 Score = 38.4 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPGKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q+ + A L+ +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFEARLAA 510 >gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23] gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23] Length = 627 Score = 38.4 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 22/134 (16%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 ++ P L E + H G FD+A L G+ P+ T + + L Sbjct: 508 PKLEEVLPAFRAFL--EGSVLVAHNGAFDMAFL-RKVGIDQPPLVDTLLLAHLLFPDLKD 564 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 H L+ + G+ + A D + + + L+ G Sbjct: 565 HRLERLAERF-GVPVLGRHT----------------ALGDALMTAEVYARMIPLLKERGF 607 Query: 177 SDL--ATSCCNFLM 188 L A C L Sbjct: 608 RTLGQALRACERLP 621 >gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168] gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168] Length = 1397 Score = 38.4 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 7/73 (9%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124 +D + H FD L G PV T SR + H L + Sbjct: 460 FIDGSIL-VAHNADFDYGFLQVALKKTGQGDISYPVLDTLTLSRALLPDLSNHKLNTLAR 518 Query: 125 ELLGINISKAQQS 137 L + + ++ Sbjct: 519 H-LNVRLDNHHRA 530 >gi|221052443|ref|XP_002257797.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193807628|emb|CAQ38133.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 1917 Score = 38.4 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 19/42 (45%) Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 ++K Q +W+ LS ++YA DV+ L KL Sbjct: 1868 EVNKECQIMNWNFRPLSSISVEYAILDVLILKNFFNLIQSKL 1909 >gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232] gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232] Length = 1465 Score = 38.4 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53 P + + D ET GL + ++Q++ D +D Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474 Query: 54 --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + G K ++ D + + H FD+ + + + Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHNLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567 >gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113] gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113] Length = 901 Score = 38.4 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 63/200 (31%), Gaps = 20/200 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66 + + A D ET L + + + I + AP L Sbjct: 319 LKTTELFAFDLETNSLDYMEAEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVLARL 378 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125 +L D + K+ +FD VL G+ ++ + + + S + + +H + + Sbjct: 379 KPLLEDPRHGKVGQNLKFDRNVLANY-GIELQGIHHDSMLESYVLDSTATRHNMDSLALK 437 Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG--RS 177 L + + + L Q+ YAA D L F ++Q+ R Sbjct: 438 YLQRTTITYEMVAGKGSKQLPFNQVTIEKAAPYAAEDADISLQLHRYFWPRIQQEESLRR 497 Query: 178 DLATSCCNFLMDRAELDLLG 197 + + ++ G Sbjct: 498 LYQELEIPLIPVLSRMERNG 517 >gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6] gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6] Length = 1463 Score = 38.4 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EKDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNIVAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2] gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2] Length = 1449 Score = 38.4 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 8/91 (8%) Query: 54 IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGVRVR--PVFCTKIA 106 + G K+ ++ + E + H FD+ L + +G+ PV T Sbjct: 479 DEMVRGSKSEEEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 538 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +R + GL K+ G+++ + ++ Sbjct: 539 ARYLYPEFKRFGLGVLSKKF-GVSLEQHHRA 568 >gi|224044191|ref|XP_002190152.1| PREDICTED: EPH receptor A3 [Taeniopygia guttata] Length = 1106 Score = 38.4 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%) Query: 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 GV VFCT+ A+ + GL+ + I K + Sbjct: 19 GVTPENVFCTQPAAA---GGKDALGLQKLCCQFHRIEEEKTLTT 59 >gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579] gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579] Length = 1442 Score = 38.4 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 7/91 (7%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108 + A K P + + D + H FD++ + + + V T SR Sbjct: 487 VDDKEAIDKILPRFIEFIGDS--VVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLSR 544 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 ++ L + + + LGI++ ++ D Sbjct: 545 FLFPELKRYKL-NVIAKHLGISLENHHRAVD 574 >gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1] gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1] Length = 993 Score = 38.4 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 33/140 (23%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGR-FDIAVLFYTFGV-RV-RPVFCTKIASRLTR 111 + + +L L D + ++H G FD +L + V T + + L Sbjct: 46 DVTQDKTMPADLKAYLDDSEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQA-LAH 104 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DD----------LS--DEQ- 149 GL L ++ +N KA+ L+ +E Sbjct: 105 GLPGALGL---LCDIFNVNSDKAKDKE--GKALISLLCKPRPKNSKIQRATALTHAEEWQ 159 Query: 150 --LQYAASDVVHLHALRLQF 167 YA SD++ + + Sbjct: 160 RFKDYAGSDILAMREIYQHL 179 >gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA] gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA] Length = 255 Score = 38.4 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 56/201 (27%), Gaps = 61/201 (30%) Query: 23 IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G L + CI+++ D VD I Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFTEKLQRLGRSDLATSC 183 + L T G+++L Sbjct: 172 VYLMMTG-----GQTNLFDEE 187 >gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA47368] Length = 1463 Score = 38.4 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNAAFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68] gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP195] gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68] gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae SP195] gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae GA17570] Length = 1463 Score = 38.4 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNAAFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|222480195|ref|YP_002566432.1| hypothetical protein Hlac_1783 [Halorubrum lacusprofundi ATCC 49239] gi|222453097|gb|ACM57362.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC 49239] Length = 254 Score = 38.4 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 26 DTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84 D ET GL RDR+ V G+ T + A A L D F+ RF Sbjct: 92 DIETTGLDEHRDRVTTVSFHRDGETTTLV---AGEDLTAERLREQFADASLLATFNGARF 148 Query: 85 DIAVLFYTFGVRVRPVFCT 103 D+ L F + T Sbjct: 149 DVPFLETAFDIE----IDT 163 >gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974] gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2] Length = 1463 Score = 38.1 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNAAFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057] Length = 1462 Score = 38.1 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGYPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|327197775|ref|YP_004301473.1| gp140 [Brochothrix phage A9] gi|299810375|gb|ADJ53174.1| gp140 [Brochothrix phage A9] Length = 700 Score = 38.1 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 32/142 (22%) Query: 42 VQLSPGDGTVDIIRI--------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 + LS +G I + K +L+G + K+ H G+FD+ + Sbjct: 254 ISLSWEEGRAVTIPVEHPEYPHTPENLKEVKSLIGKFLIANTYKVAHNGQFDMRISKQLI 313 Query: 94 --GVRVRPVFCTKIASRLTRTY--TNQHGLKDNLKEL-----------------LGINIS 132 + V T++ LT + + GLK + + L + Sbjct: 314 DQKLTVANSLDTQVGYYLTVSQKTEDAFGLKTIVYQYTDMGGYEDPLDEYKEWFLKKLLK 373 Query: 133 KAQQSSDWSADDL---SDEQLQ 151 K + D A + + L+ Sbjct: 374 KTARIRDILARPVEKRTPTMLR 395 >gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS] gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS] Length = 920 Score = 38.1 bits (88), Expect = 0.68, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 9/91 (9%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101 + GDG I + + L L D K H + D+A G ++ V Sbjct: 378 ADGDGR-YIDTTSLDPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWKLAGVT 432 Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +A+ L R L D L + Sbjct: 433 SDTALAAYLVRPGQRSFSLDDLSLRYLRREL 463 >gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC0288-04] gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA] gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae CDC0288-04] gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pneumoniae JJA] Length = 1463 Score = 38.1 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNAAFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755] gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755] Length = 1449 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 8/91 (8%) Query: 54 IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGVRVR--PVFCTKIA 106 + G K+ ++ + E + H FD+ L + +G+ PV T Sbjct: 479 DEMVRGSKSEEEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 538 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +R + GL K+ G+++ + ++ Sbjct: 539 ARYLYPEFKRFGLGVLSKKF-GVSLEQHHRA 568 >gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20] gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20] Length = 1449 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 8/91 (8%) Query: 54 IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGVRVR--PVFCTKIA 106 + G K+ ++ + E + H FD+ L + +G+ PV T Sbjct: 479 DEMVRGSKSEEEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 538 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +R + GL K+ G+++ + ++ Sbjct: 539 ARYLYPEFKRFGLGVLSKKF-GVSLEQHHRA 568 >gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius LAA1] Length = 1440 Score = 38.1 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 40/140 (28%), Gaps = 35/140 (25%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPG--------DGTVDIIRIAAGQK---------- 61 + + DTET GL R D +++++ D +I Sbjct: 425 TEYVVFDTETTGLNARED--TLIEIAAVKVKAGQIVDTYATLIDPERALDPKIVELTGIT 482 Query: 62 -----NAPNLVGMLV-----DEKREKIFHYGRFDIAVLFY---TFGVRV--RPVFCTKIA 106 P L L + H FD+ L G+ PV T Sbjct: 483 NEMVAGQPKLKEALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEEPVIDTLAL 542 Query: 107 SRLTRTYTNQHGLKDNLKEL 126 +R+ + LK ++ Sbjct: 543 ARVLYPGEKNYKLKTLTQKF 562 >gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065] Length = 1432 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 19/122 (15%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108 + A K P + + + + H FD++ + + + V T SR Sbjct: 477 VDDKEAIDKILPRFIEFIGNS--VVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLSR 534 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 ++ L + + + LGI++ ++ D D + A +D+ L Sbjct: 535 FLFPELKRYKL-NVIAKHLGISLENHHRAVD-------DAK---ATADI--LLKAFEMLK 581 Query: 169 EK 170 EK Sbjct: 582 EK 583 >gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A2 str. Kyoto] gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum A2 str. Kyoto] Length = 1432 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 19/122 (15%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108 + A K P + + + + H FD++ + + + V T SR Sbjct: 477 VDDKEAIDKILPRFIEFIGNS--VVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLSR 534 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 ++ L + + + LGI++ ++ D D + A +D+ L Sbjct: 535 FLFPELKRYKL-NVIAKHLGISLENHHRAVD-------DAK---ATADI--LLKAFEMLK 581 Query: 169 EK 170 EK Sbjct: 582 EK 583 >gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1] Length = 1538 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 7/87 (8%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRT 112 ++ P + D + H FD++ + + G P V T +R Sbjct: 576 PKIEEVLPKFLEFCSDA--VMVAHNASFDMSFIRHNAMIQGKSFEPTVLDTVSMARFLLP 633 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139 N+ L KE L I++ ++ D Sbjct: 634 NLNRFKLDTVAKE-LRISLENHHRAVD 659 >gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland] gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum F str. Langeland] gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum F str. 230613] Length = 1432 Score = 38.1 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 19/122 (15%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108 + A K P + + + + H FD++ + + + V T SR Sbjct: 477 VDDKEAIDKILPRFIEFIGNS--VVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLSR 534 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 ++ L + + + LGI++ ++ D D + A +D+ L Sbjct: 535 FLFPELKRYKL-NVIAKHLGISLENHHRAVD-------DAK---ATADI--LLKAFEMLK 581 Query: 169 EK 170 EK Sbjct: 582 EK 583 >gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49] Length = 641 Score = 38.1 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 13/123 (10%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P +L + S G + +A + P L L Sbjct: 67 AFDTETTSLDPMVAQLVGLSFSTEPGKAAYLPVAHRGPDLPEQLPLDDVLARLKPWLESA 126 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 +R+K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 127 ERKKVGQHLKYDAQVLANY-GIELNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 184 Query: 133 KAQ 135 K + Sbjct: 185 KYE 187 >gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M] gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M] Length = 920 Score = 38.1 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI+ E + A DTET L P RL + + G + +A + Sbjct: 325 TIQTWEQFDAWFAKLEAAELTAFDTETTALDPMVARLVGLSFAVEPGKAAYLPVAHRGPD 384 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 P L L R+K+ + ++D VL G+ + + T + S + Sbjct: 385 MPEQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIEHDTLLESYVLE 443 Query: 112 TYTNQHGLKDNLKELLGINISKAQ 135 ++ H + LG+ K + Sbjct: 444 SHRT-HDMDSLALRHLGVKTIKYE 466 >gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] Length = 917 Score = 38.1 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI+ E + A DTET L P RL + + G + +A + Sbjct: 322 TIQTWEQFDAWFAKLEAAELTAFDTETTALDPMVARLVGLSFAVEPGKAAYLPVAHRGPD 381 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 P L L R+K+ + ++D VL G+ + + T + S + Sbjct: 382 MPEQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIEHDTLLESYVLE 440 Query: 112 TYTNQHGLKDNLKELLGINISKAQ 135 ++ H + LG+ K + Sbjct: 441 SHRT-HDMDSLALRHLGVKTIKYE 463 >gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30] gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10] gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30] gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10] Length = 1449 Score = 38.1 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 8/91 (8%) Query: 54 IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGVRVR--PVFCTKIA 106 + G K+ ++ + E + H FD+ L + +G+ PV T Sbjct: 479 DEMVRGSKSEEEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 538 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +R + GL K+ G+++ + ++ Sbjct: 539 ARYLYPEFKRFGLGVLSKKF-GVSLEQHHRA 568 >gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] Length = 920 Score = 38.1 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 23/168 (13%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 AVDTET L + L + L G I +A ++AP L L D Sbjct: 346 AVDTETTSLEAMQAELVGISLCCEPGRAAYIPVAHNYQDAPVQLSRQHVLEKLKPWLEDA 405 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY--TNQHGLKDNLKELLGIN 130 + K+ + ++D + GVR+ V T + S + ++ + L + L Sbjct: 406 SKPKLGQHLKYDSHIFANY-GVRLAGVKHDTLLESYVFESHRPHDMDSLAA--RHLERKT 462 Query: 131 IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 I+ K ++ + +YAA D AL +++ Sbjct: 463 ITYAEVCGKGASQIGFNEVAIERA-TEYAAEDAEVTLALHQAMWPQIE 509 >gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] Length = 901 Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 28/194 (14%) Query: 4 IRVHEGDIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-- 56 + H AEC A A D ET L + + + G + + Sbjct: 302 LHYHLIQTIAECNALCEKLAQKSAFVFDVETDSLNYMQAHWVGISFAVEAGEAWYLPLVH 361 Query: 57 -----AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLT 110 + L + + KI + +FD +L G+ + V T + S Sbjct: 362 QNGINLPFAETLAALKNLFENASIRKIGQHLKFDRHILARY-GISLNGVIDDTMLMSYCY 420 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHL 160 + +H + D L + D + DL QYA D Sbjct: 421 NSTATRHNMDDLADFYLNKQ---TIRFEDIAGSGAKQRRFDEIDLETAM-QYACEDADIT 476 Query: 161 HALRLQFTEKLQRL 174 L F +KL Sbjct: 477 LQLYQFFQQKLASE 490 >gi|310830408|ref|YP_003965509.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2] gi|309249875|gb|ADO59441.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2] Length = 311 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 78 IFHYGRFDI-AVLFYTF---GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD L + F G+ CTKI +++ R +GL+D K+ G+ I+ Sbjct: 109 VAHNKSFDWDRYLLHYFEKVGIIADNASICTKILAKMYRPNLPAYGLEDICKD-AGVQIT 167 Query: 133 KAQQSSD 139 ++ D Sbjct: 168 NHHRALD 174 >gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2M] Length = 398 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 33/186 (17%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + + V T T + P + +Q G + + + AP L L + + + Sbjct: 63 IGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRDAPSFAELAPALFERL--DGKLFVA 120 Query: 80 HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 H FD L F G P V CT SR ++HGL + G+ + Sbjct: 121 HNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALFPRESRHGLDALIARH-GLVPAARH 179 Query: 136 QSSDWSADDLSDEQLQYAASDV-------VHLHAL--RLQFTEKLQR-LGRSDLATSCCN 185 + A +D HLH + R + +++ R R LA Sbjct: 180 R----------------ALADADLLWQFWRHLHDVVPRERLRDQIARTTRRFRLAGEVTE 223 Query: 186 FLMDRA 191 L+D A Sbjct: 224 ALLDTA 229 >gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669] gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669] Length = 1463 Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%) Query: 14 ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59 E + D ET GL D ++Q++ G+ + Sbjct: 417 EMDLLEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473 Query: 60 ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 KNA L +L + + + H FD+ + + +P Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565 >gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325] gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325] Length = 1449 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 53/193 (27%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGT--------------VDIIRIA 57 + + D ET GL RDR +++++ G I R+ Sbjct: 424 LKDATYVVFDVETTGLSAERDR--LIEIAAVKVKNGSEIDSFESYINPRRPISELITRLT 481 Query: 58 AGQKN----APNLVGMLV------DEKREKIFHYGRFDIAVLFYTF---GVRVRP--VFC 102 + + AP ++ DE + H +FD+ L +F G++ + Sbjct: 482 SITDDDVKDAPFEEEVMTNFYNWLDEDDILVAHNAKFDLGFLDKSFERLGLKNKNNASID 541 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T SR +HGL + +L + + + + A D Sbjct: 542 TLFISRAENKEAKRHGLSNL-AKLYKVRLVQHHR----------------AIYDTKATAE 584 Query: 163 LRLQFTEKLQRLG 175 + ++ ++L +LG Sbjct: 585 IFVKMLDQLYKLG 597 >gi|242054355|ref|XP_002456323.1| hypothetical protein SORBIDRAFT_03g033980 [Sorghum bicolor] gi|241928298|gb|EES01443.1| hypothetical protein SORBIDRAFT_03g033980 [Sorghum bicolor] Length = 203 Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 5/117 (4%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 +Q+ D + +I L L D + + D+A L +G+ V Sbjct: 74 LQICV-DHRCLVFQILRADYVPDALSRFLADHRFTFVGVGIGDDVAKLGAGYGLWVASAV 132 Query: 102 CT-KIAS-RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156 ++A+ L R + GL + ++G+ + K D A LSD+Q++YA +D Sbjct: 133 DLRELAADTLGRPVLRRAGLPALVWVVMGLQMQKPHHVRD--APALSDDQVKYACAD 187 >gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus sp. HGF5] gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus sp. HGF5] Length = 1438 Score = 38.1 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 11/89 (12%) Query: 61 KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLT 110 K+AP L +L + + H RFD+ + P T +RL Sbjct: 481 KDAPELEPVLKEFVEFVGDGVLVAHNARFDMGFIQAALKNAGMDTLENPYLDTLELARLV 540 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 H L + + + ++ D Sbjct: 541 HPGLKNHRLNTLADKY-KVLLESHHRAID 568 >gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 955 Score = 38.1 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 8/90 (8%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASR 108 I+ + L E I H + L + G P+F TK+A Sbjct: 414 IVPLPITDTLRAQFARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKLAGY 469 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSS 138 LT+ + LK + L I+ ++ +Q S Sbjct: 470 LTQPDFHADSLKQAAEHFLDIHFTETEQPS 499 >gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1] gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1] Length = 920 Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 13/144 (9%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 TI+ E + A DTET L P RL + + G + +A + Sbjct: 325 TIQTWEQFDAWFAKLEAAELTAFDTETTALDPMVARLVGLSFAVEPGKAAYLPVAHRGPD 384 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 P L L R+K+ + ++D VL G+ + + T + S + Sbjct: 385 MPEQLPLDDVLARLKSWLESPDRKKVGQHLKYDAQVLANY-GIELNGIEHDTLLESYVLE 443 Query: 112 TYTNQHGLKDNLKELLGINISKAQ 135 ++ H + LG+ K + Sbjct: 444 SHRT-HDMDSLALRHLGVKTIKYE 466 >gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 950 Score = 38.1 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 8/90 (8%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASR 108 I+ + L E I H + L + G P+F TK+A Sbjct: 409 IVPLPITDTLRAQFARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKLAGY 464 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSS 138 LT+ + LK + L I+ ++ +Q S Sbjct: 465 LTQPDFHADSLKQAAEHFLDIHFTETEQPS 494 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 38.1 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 12/126 (9%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122 L +E KI H ++D ++ + +G+ +R + S + + + H + Sbjct: 450 LSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508 Query: 123 LKELL---GINISKAQQSS---DWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLG 175 ++ L I K+++SS D +SD Q+ ++A + + L L KL Sbjct: 509 AQKWLSYTRKEILKSRKSSIPID----KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 Query: 176 RSDLAT 181 + Sbjct: 565 LLHVYE 570 >gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247] gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247] Length = 949 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 1/97 (1%) Query: 44 LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102 ++ DGT + + A + L L D K H ++ I L Sbjct: 367 IAAADGTSAYVDVTAVDADDEQALADWLADPAMGKALHEVKWGIHALRSRGWTLAGVTSD 426 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 T +A+ + R L D L + S D Sbjct: 427 TSLAAYIVRPGQRTFNLDDLALRYLRRELRADDGSGD 463 >gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10] gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10] Length = 1438 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 11/89 (12%) Query: 61 KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLT 110 K+AP L +L + + H RFD+ + P T +RL Sbjct: 481 KDAPELEPVLKEFVEFVGDGVLVAHNARFDMGFIQAALKNAGMDTLENPYLDTLELARLV 540 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 H L + + + ++ D Sbjct: 541 HPGLKNHRLNTLADKY-KVLLESHHRAID 568 >gi|123472141|ref|XP_001319266.1| hypothetical protein [Trichomonas vaginalis G3] gi|121902045|gb|EAY07043.1| hypothetical protein TVAG_311680 [Trichomonas vaginalis G3] Length = 220 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 36/187 (19%) Query: 2 TTIRVHEGDIPAE----CAARYVDAIAVDTE-------TLGLMPR-RDRLC-IVQLSPGD 48 TT+ + D P I +D E ++ + LC ++Q Sbjct: 50 TTVMLTTSDSPELPKILKVLELGPFITMDLEWYSQSQDSISIYTFCTADLCILIQ----- 104 Query: 49 GTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 G L +L ++ K D+ L FG + + Sbjct: 105 --------QVGDAPRRELKDFILRNKFVVK---DVGNDMKHLKSVFGYDFDFNYD-DVHR 152 Query: 108 RLTRTYTNQHGLKDNLKELLGINI-----SKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 + Y + G ++ +K+ SDW L +Q+ YA D V L Sbjct: 153 TVFMKYHLKAGFDAMIESYANSEPTAAFKNKSIIFSDWDQIPLEPQQILYATFDCVGLSK 212 Query: 163 LRLQFTE 169 E Sbjct: 213 CYPNLPE 219 >gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1] Length = 375 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 33/186 (17%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + + V T T + P + +Q G + + + AP L L + + + Sbjct: 40 IGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRDAPSFAELAPALFERL--DGKLFVA 97 Query: 80 HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 H FD L F G P V CT SR ++HGL + G+ + Sbjct: 98 HNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALFPRESRHGLDALIARH-GLVPAARH 156 Query: 136 QSSDWSADDLSDEQLQYAASDV-------VHLHAL--RLQFTEKLQR-LGRSDLATSCCN 185 + A +D HLH + R + +++ R R LA Sbjct: 157 R----------------ALADADLLWQFWRHLHDVVPRERLRDQIARTTRRFRLAGEVTE 200 Query: 186 FLMDRA 191 L+D A Sbjct: 201 ALLDTA 206 >gi|15230500|ref|NP_187852.1| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] gi|12321946|gb|AAG51003.1|AC069474_2 hypothetical protein; 72371-73099 [Arabidopsis thaliana] gi|15795165|dbj|BAB03153.1| unnamed protein product [Arabidopsis thaliana] gi|332641677|gb|AEE75198.1| DEDDy 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] Length = 242 Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 111 RTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAASDVV--HLHALRL 165 R + L+ ++E LG + + + SDW +LS +Q+ A+ DV A+ Sbjct: 175 RRSMYNYSLEKIVEENLGYPGVRLDREVSMSDWRVYNLSYDQILQASIDVYACCSLAILD 234 Query: 166 QFTEKLQR 173 E+ R Sbjct: 235 HLWEEKNR 242 >gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2] Length = 375 Score = 38.1 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 33/186 (17%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + + V T T + P + +Q G + + + AP L L + + + Sbjct: 40 IGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRDAPSFAELAPALFERL--DGKLFVA 97 Query: 80 HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 H FD L F G P V CT SR ++HGL + G+ + Sbjct: 98 HNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALFPRESRHGLDALIARH-GLVPAARH 156 Query: 136 QSSDWSADDLSDEQLQYAASDV-------VHLHAL--RLQFTEKLQR-LGRSDLATSCCN 185 + A +D HLH + R + +++ R R LA Sbjct: 157 R----------------ALADADLLWQFWRHLHDVVPRERLRDQIARTTRRFRLAGEVTE 200 Query: 186 FLMDRA 191 L+D A Sbjct: 201 ALLDTA 206 >gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833] gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833] Length = 893 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 + ++ G + Q++ L L DE + K H + + L+ G+ +R + Sbjct: 352 IAIATSAGAAYLDPARLTQEDEAALAAWLADETKPKAAHDVKGPLLALWEH-GLDLRGLT 410 Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T IA+ L +++ + L + Sbjct: 411 CDTAIAAYLAMPGQRSFPIEELVLRYLNREL 441 >gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa] gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa] Length = 834 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 58/207 (28%), Gaps = 63/207 (30%) Query: 24 AVDTETLGLMP-------RRDRLCIVQLSPGDGT----------VDIIRIAAGQKNAPNL 66 A DTE + + C+ + G VD++ G+ Sbjct: 71 ACDTEVARIDVKEETPIDHGEITCL-SIYCGPEADFGHGKSCIWVDVLD-GGGRDLLNEF 128 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL---TRTYTNQHGLKDN 122 D +K++H FD V+ G V T +RL +R + L+ Sbjct: 129 ALFFEDPDIKKVWHNYSFDNHVIENY-GFSVSGFHADTMHMARLWDSSRRLKGGYSLEAL 187 Query: 123 L-------------KELLGINISKAQQSSDWSADDLSDE--------------------- 148 KEL+G K + + L + Sbjct: 188 TGDQKVMRGAGSCYKELIG----KVSMKTIFGKKKLKKDGSEGKMTIIAPVEELQREERE 243 Query: 149 -QLQYAASDVVHLHALRLQFTEKLQRL 174 + Y+A D + L +L ++ Sbjct: 244 PWICYSALDAISTLQLYKSMESELSKM 270 >gi|317487299|ref|ZP_07946094.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6] gi|316921489|gb|EFV42780.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6] Length = 626 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 23/123 (18%) Query: 70 LVDEKREKIFHYG-RFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELL 127 L+ + R + H G FDI + + P +F T ASRL T K+ Sbjct: 69 LLCQSRLLVAHNGLCFDIPAIQKLHPSLLLPRLFDTLTASRLIWTNLKDLDFTQLRKKSC 128 Query: 128 GI--NISKAQQSSDWSADDL------------------SDEQLQYAASDVVHLHALRLQF 167 ++ + W L S++ +Y DV L AL Sbjct: 129 RFPPKLAGSHSLDAWGQR-LGVMKGDYGKTTENAWSRWSEDMQRYCEQDVEVLEALYRHI 187 Query: 168 TEK 170 ++ Sbjct: 188 LDQ 190 >gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] Length = 653 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 4/85 (4%) Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 G V I+ +A G+ +V L D K + F+ L F + CT++ Sbjct: 42 GPVQIVDLAQGEYLPQEIVEALADPAVVKHAYNAAFEWYCLNRFFYSPIEQWRCTQV-HG 100 Query: 109 LTRTYTNQHGLKDNLKELLGINISK 133 L YT G + E LGI K Sbjct: 101 LYCGYTAGLG---AVGEALGIPQDK 122 >gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens AM1] Length = 248 Score = 37.7 bits (87), Expect = 0.89, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 11/78 (14%) Query: 60 QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP------VFCTKIASR 108 K+AP + D IFH FD+ FG+ P V + + +R Sbjct: 68 LKDAPVFAAVAADIVEFIADSPAIFHNAPFDLGFFDLEFGLLSLPSLDRSRVTDSLVHAR 127 Query: 109 LTRTYTNQHGLKDNLKEL 126 + GL Sbjct: 128 KLLPAGAKAGLDALCNRY 145 >gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644] gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644] Length = 1448 Score = 37.7 bits (87), Expect = 0.90, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 36/154 (23%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDII---RIAAGQKNAP 64 ++ + DTET GL + ++ +++L+ G+ I ++ N Sbjct: 423 LKHATYVVFDTETTGLSAQYNK--VIELAAVKMKDGEKIGEFEEFIDPGHPLSQTTINLT 480 Query: 65 NLVGML-----VDEKREKIF-----------HYGRFDIAV-----LFYTFGVRVRPVFCT 103 ++ + +E+ K+F H FD+ L + P T Sbjct: 481 HITDAMVRGSKTEEEVFKLFREFCKGCIIVGHNATFDVDFMNTGYLRHGMPEIKEPWVDT 540 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +R+ + + L K L +++ ++ Sbjct: 541 LPLARILYSDMKRFTLDTLAKR-LKVDLEHHHRA 573 >gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718] gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718] Length = 687 Score = 37.7 bits (87), Expect = 0.90, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 42/186 (22%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101 + DG V++ I AG L + + FH FD VL Y PV Sbjct: 36 AINDGPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK---------------------AQQSSDW 140 T + + L G L E+LG+ K + + Sbjct: 96 DTMVQA-LAHGLPGSLG---ELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA-- 149 Query: 141 SADDLSDEQ---LQYAASDVVHLHALRLQFTE------KLQRLGRSDLATS---CCNFLM 188 ++ +E + YA D+ + + + + +L R C + + Sbjct: 150 TSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVEL 209 Query: 189 DRAELD 194 RA +D Sbjct: 210 ARAAID 215 >gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2] Length = 1446 Score = 37.7 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 54/184 (29%), Gaps = 53/184 (28%) Query: 25 VDTETLGLMPRRDRL---CIVQLSPGDGTVDII----------RIAAGQKNAPNLVGMLV 71 +D ET G P +++ I++L G I I A N+ +V Sbjct: 426 LDLETTGFSPLTEKITEVGIMKLKDGK---VIDQFSCFVNPEKPIPARVVEVTNITDYMV 482 Query: 72 --DEKREKIF--------------HYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTR 111 E EK+F H FDI L + V T ++ Sbjct: 483 QDAETIEKVFPKMLEFIEGSVLVAHNAEFDIGFLKHNAKVLGYNFDFTYLDTLSLAKEIF 542 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + L K LGI + A + A DV + EKL Sbjct: 543 PDYKSYKLGRIAKN-LGIKVDVAHR----------------ALDDVDTTVKVFNIMLEKL 585 Query: 172 QRLG 175 + G Sbjct: 586 KEKG 589 >gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812] gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812] Length = 1464 Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 39/149 (26%), Gaps = 37/149 (24%) Query: 12 PAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPN 65 P + + D ET GL D ++Q++ G+ + Sbjct: 416 PVDLELNEATYVVFDVETTGLSAVHND---LIQIAASKMYKGNIVEQFDEFINPGHHLSA 472 Query: 66 L---------------------VGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRV 97 + M D + + H FD+ + + Sbjct: 473 FTTELTGITDNHVRNAKPIEQVLQMFQDFCKDTVLVAHNATFDVGFMNANYKRHGMPTIT 532 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 +PV T +R +HGL K Sbjct: 533 QPVIDTLELARNLYPEYKRHGLGPLTKRF 561 >gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG] gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG] Length = 1444 Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 42/170 (24%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59 T + D P A + + D ET GL D+ +++L+ DG V I + Sbjct: 404 TPVAYRADEPRVLA--DAEYVVFDVETTGLSAVYDK--VIELAAVKMKDGQV-IDQFEEM 458 Query: 60 QKNAPNLVGM---------------------------LVDEKREKIFHYGRFDIAVL--- 89 L + D + H FD+ L Sbjct: 459 IDPGFPLSELTINLTHITDDMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNG 517 Query: 90 --FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + PV T SR+ H L K+ +++ ++ Sbjct: 518 YERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566 >gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] Length = 880 Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 43/179 (24%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRVR-P 99 + D I+ ++ + DEK K FDI VL G+ + P Sbjct: 340 IKTKDSPAYILDPDQAFIDS--FKDVFEDEKILK----NSFDIKEDIVLLNKLGIDLNLP 393 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQY 152 + L + + LK + L + K LS +L Y Sbjct: 394 FDDLMLMHYLIDPSRSSYDLKTLSQAYLDYEVISEVDLLGK-------GKKSLSYGELDY 446 Query: 153 ------------AASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGW 198 A D + + + L DL A ++++G+ Sbjct: 447 DKLSNYLASELNAIEDA------KAKLVDMLNEYKMYDLYEDIEIKLSKVLANMEIVGF 499 >gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2] gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2] gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 993 Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 39/143 (27%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGR-FDIAVLFYTFGV-RV-RPVFCTKIASRLTR 111 + + +L D + ++H G FD +L + V T + + L Sbjct: 46 DVTQDKTMPADLKAYFDDSEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQA-LAH 104 Query: 112 TYTNQHGLKDNLKELLGINISKA----------------------QQSSDWSADDLS--D 147 GL L ++ +N KA Q+++ L+ + Sbjct: 105 GLPGALGL---LCDIFNVNSDKAKDKEGKALISLLCKPRPKNSKIQRAT-----ALTHAE 156 Query: 148 EQ---LQYAASDVVHLHALRLQF 167 E YA SD++ + + Sbjct: 157 EWQRFKDYAGSDILAMREIYQHL 179 >gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134] Length = 463 Score = 37.7 bits (87), Expect = 0.94, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 31/144 (21%) Query: 25 VDTETLGLMPRRDRLCIVQLS--PGDGTVD---------------IIRIAAGQKN----A 63 +D ET GL P D++ + + G+ VD I +I + A Sbjct: 5 IDVETTGLRPTDDKITEIAIYKHDGESVVDSFHSLVNPECYISDRITQITGITNDMVANA 64 Query: 64 PNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPVFCTKIASRLTRTYT 114 P + D E + H FD + F R CT SR Sbjct: 65 PKFYEIAKDILAITEGTVFVAHNAHFDYGFVREEFKALGYKFTRKTLCTVRVSRKVFPGL 124 Query: 115 NQHGLKDNLKELLGINISKAQQSS 138 + L K I ++ ++S Sbjct: 125 PSYSLAKLCKHF-KIQLTNHHRAS 147 >gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus rhamnosus HN001] Length = 1444 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 42/170 (24%) Query: 3 TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59 T + D P A + + D ET GL D+ +++L+ DG V I + Sbjct: 404 TPVAYRADEPRVLA--DAEYVVFDVETTGLSAVYDK--VIELAAVKMKDGQV-IDQFEEM 458 Query: 60 QKNAPNLVGM---------------------------LVDEKREKIFHYGRFDIAVL--- 89 L + D + H FD+ L Sbjct: 459 IDPGFPLSELTINLTHITDDMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNG 517 Query: 90 --FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 + PV T SR+ H L K+ +++ ++ Sbjct: 518 YERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566 >gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 375 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 29/147 (19%) Query: 9 GDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNAPN 65 D+ A + VD ET G P R+ +V++ PG + + GQ P Sbjct: 2 SDLYPSDPASEQPLVFVDLETTGGSPAEHRITEIGVVEIGPGHMSTWTTLVNPGQPIPPF 61 Query: 66 LVGM--LVDEKRE------------------KIF--HYGRFDIAVLFYTF---GVRVRP- 99 + + + D+ K+F H FD L F G+ P Sbjct: 62 IQQLTGISDDMVRDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNPD 121 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126 V CT SR ++HGL ++ Sbjct: 122 VLCTVKLSRALFPRESRHGLDALIERY 148 >gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36] gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis SK36] Length = 1462 Score = 37.7 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 38/139 (27%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + ++PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKIIQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035] gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035] Length = 688 Score = 37.7 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 19/102 (18%) Query: 78 IFHYGRFDIAVLFYTFGVRVR----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H FD+A L V R PV CT + S ++ QH L + GI I Sbjct: 579 VAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLMSAGLFDHSGQHTLDALCERF-GITIPP 637 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + + A D V + ++ LQ G Sbjct: 638 EARHT--------------AMGDTVATAEVFVRMLGLLQAKG 665 >gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE] gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1] gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE] gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1] Length = 256 Score = 37.7 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 51/186 (27%), Gaps = 56/186 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D VD I Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFT 168 + L T Sbjct: 172 VYLMMT 177 >gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705] gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705] Length = 955 Score = 37.7 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105 + I+ + L L E I H + L + G P+F TK+ Sbjct: 411 SAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYKE----LLHLLGAVDLDLDLPMFDTKL 466 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 A L + + LK + L I+ ++ +Q S Sbjct: 467 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 499 >gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 901 Score = 37.7 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 22/166 (13%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111 I + + L L DE R K H + + L+ G+ +R + T +A+ L Sbjct: 369 IDPTTLTEADETALRAWLGDESRPKAVHDAKGPMLALWAQ-GMELRGLTCDTALAAYLAM 427 Query: 112 TYTNQHGLKDNLKELLGINISKAQ----QSS------DWSADDLSDEQLQYAASDVVHLH 161 L+D ++ L + Q+S D +A +L L + Sbjct: 428 PGQRTFLLEDLVRAYLQRELRGEAETGGQASLFDDEDDDTARELGLRALA--------VR 479 Query: 162 ALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGW-ENVDIFS 205 L L+ G + L + AEL+ G + D FS Sbjct: 480 ELADALEAFLEPRGGTHLMREVELPLVTVLAELERAGIAADGDYFS 525 >gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B] Length = 473 Score = 37.7 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 37/151 (24%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSPG-------------DGTVDI---IRIA-------- 57 + DTET GL D IVQ++ D V+ I A Sbjct: 270 FVVFDTETTGLSVETD--AIVQIAAQRVMNGRLVKGEVFDAYVNPGRAIPPASTRIHGVR 327 Query: 58 -AGQKNAPNLVGMLV-----DEKREKIFHYGRFDIAVLF---YTFGVR-VRPVFCTKIAS 107 A +AP++ ++ + + H FDI +L G++ PV T + S Sbjct: 328 DADVADAPSIEQVIPAFHHFSKDAVLVAHNAPFDIGLLRQQERATGIKWDHPVLDTVLLS 387 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 + + +H L + L I I + + Sbjct: 388 AVVFGISQEHSLDALCQR-LAIEIPAQHRHT 417 >gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] Length = 939 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 24/166 (14%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNA--PNLVGMLVDEKRE 76 I+ DTET G + + +V +S G+G + Q A + + + Sbjct: 368 ISFDTETTGTDA--NAVDLVGMSFSIKAGEGWYIPVPADKAQAQAIVDSFLPLFNTTHIT 425 Query: 77 KIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132 I ++D+ V+ +GV PVF T +A L + G+ + L ++I Sbjct: 426 LIGQNIKYDMIVM-KWYGVEFNGPVFDTMLAHYLIEPEGRR-GMDLLSAQYLQYEPVSIE 483 Query: 133 -------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 K Q + D D+ +YA D L+ +F L Sbjct: 484 TLIGKKGKGQGN---MRDVEIDKIKEYAVEDADITLQLKEKFAPLL 526 >gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545] Length = 912 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL-- 109 + + G + +K++H FD V+ G+++ T +RL Sbjct: 190 VDTLKLGDEGWAIFKPYFESPDAKKVWHNYSFDRHVIENHGGIKLAGFAADTMHMARLWN 249 Query: 110 -TRTYTNQHGLKDN 122 R + L+ Sbjct: 250 SNRKLEGGYSLEAL 263 >gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1] gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1] Length = 256 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 61/201 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D VD I Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKEIAQDFLDYINGAELLIHNAPFDVGFMDYEFCKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFTEKLQRLGRSDLATSC 183 + L T G+++L + Sbjct: 172 VYLMMTG-----GQTNLFDAE 187 >gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum nigrificans DSM 574] gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum nigrificans DSM 574] Length = 930 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 30/147 (20%) Query: 21 DAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR--IAAGQKNAPNLVGM--LVDE 73 +A+D ET GL D + +V++ G D + + G + + L D+ Sbjct: 4 SFVALDLETTGLDCWSDDIIEIGMVKVIDGQER-DFFQSLVRPGGPLPVKIKQLTGLKDD 62 Query: 74 K----------REKIF----------HYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRT 112 KI H +FD L G ++ T +R+ + Sbjct: 63 DFQSAPWFQTIIPKILTFIGDLPLVGHNIKFDRDFLAAACGHQLPNDLYDTLELARILQP 122 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139 H L + K + G+ ++ ++ D Sbjct: 123 SAPSHRLGELCK-IAGVEVNVEHRALD 148 >gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100] gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100] Length = 1462 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPQITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 950 Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%) Query: 50 TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105 + I+ + L L E I H + L + G P+F TK+ Sbjct: 406 SAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYKE----LLHLLGAVDLDLDLPMFDTKL 461 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 A L + + LK + L I+ ++ +Q S Sbjct: 462 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494 >gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66] gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66] Length = 1462 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1] Length = 1462 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 38/147 (25%), Gaps = 37/147 (25%) Query: 14 ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67 + + D ET GL D ++Q++ G+ + Sbjct: 416 DMELSNATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472 Query: 68 GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99 L E+ K + H FD+ + + +P Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126 V T +R +HGL K Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559 >gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus caprae C87] gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus caprae C87] Length = 900 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 35/167 (20%) Query: 63 APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTRT 112 AP + D + + H FD+ + F + + V T ++ Sbjct: 68 APYFNEVAEDIYDQIKDCIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTLELFKIAFP 127 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD----------------WSADDL-SDEQLQYAAS 155 + L + + I + KA +D + + L + +QL Y + Sbjct: 128 TDKSYQLSELAQAH-DIPLDKAH-RADEDATTTAKLMIKAFKKFESLPLDTQKQLYYLSK 185 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS---CCNFLMDRAELDLLGWE 199 ++ + L E + R +S ++ R ++DL G + Sbjct: 186 NLKY--DLYNILFEMV-RTNQSKPLDDQFGQFEQIIYRKQVDLKGPQ 229 >gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2] gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2] Length = 1438 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 11/89 (12%) Query: 61 KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLT 110 K+AP++ ++ + + H RFDI + T PV T +RL Sbjct: 481 KDAPDVEPVMKEFVAFAGDAVLVAHNARFDIGFIQATLRKMGLPEMTNPVLDTLELARLL 540 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 H L + + + ++ D Sbjct: 541 FPTMKNHRLNTLTSKY-KVALESHHRAID 568 >gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7] Length = 877 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 17/94 (18%) Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD-DLSDEQ--------- 149 +F IA+ L + + ++ LG+ + +DW L++ Sbjct: 391 IFDAAIAAYLINPLKDSYTYDGIAQDFLGMTVP---SRADWLKKMTLTEASEKEKESFGH 447 Query: 150 -LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L Y+A ++L+ G L Sbjct: 448 YLAYSAM---IPVQAYSTLKKRLEETGMDRLFDE 478 >gi|225554428|gb|EEH02726.1| RNA exonuclease [Ajellomyces capsulatus G186AR] Length = 736 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 46/161 (28%), Gaps = 39/161 (24%) Query: 5 RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60 V E DI + +++D E T G + R+ +V DG V + + Sbjct: 330 TVLENDIQLGSITAGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDDLVKPDE 386 Query: 61 -------------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 L+ + I H D++ L Sbjct: 387 PIIDYLTRFSGITKEMLEPVTTRLPDVQQKLLTLFTPRTIL-IGHSLNSDLSALK----- 440 Query: 96 RVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 P + T I R + LK ++ LG I K Q Sbjct: 441 LTHPFIVDTSIIYPHPRGPPLKSSLKWLSQKYLGKEIQKGQ 481 >gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42] gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42] Length = 240 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 50/177 (28%), Gaps = 52/177 (29%) Query: 26 DTETLGLMPRRDRL----------------CI-VQLSPGDGTVDIIRIA------AGQKN 62 DTET GL R DR+ + + ++PGD V +A K+ Sbjct: 7 DTETTGLDNRADRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLKD 66 Query: 63 APNLVGMLVDE------KREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRLT 110 + DE + I H FD+ + F + V T +R Sbjct: 67 KKPFAAV-ADEILAFFGDGKWIAHNATFDMGFINAEFARIGLPPILPDKVIDTLSMARRK 125 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L + I + ++ A D L + ++ Sbjct: 126 HPMGPN-SLDALCRRY---GIDNSHRT------------KHGALLDSELLAEVYIEM 166 >gi|294949466|ref|XP_002786211.1| hypothetical protein Pmar_PMAR019889 [Perkinsus marinus ATCC 50983] gi|239900368|gb|EER18007.1| hypothetical protein Pmar_PMAR019889 [Perkinsus marinus ATCC 50983] Length = 76 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 13/26 (50%) Query: 140 WSADDLSDEQLQYAASDVVHLHALRL 165 W L + + YAA DV+ L LR Sbjct: 50 WFYRPLQPDMISYAARDVMCLPLLRE 75 >gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405] gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678] gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058] Length = 1462 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 38/147 (25%), Gaps = 37/147 (25%) Query: 14 ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67 + + D ET GL D ++Q++ G+ + Sbjct: 416 DMELSNATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472 Query: 68 GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99 L E+ K + H FD+ + + +P Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126 V T +R +HGL K Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559 >gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus capitis SK14] gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase [Staphylococcus capitis SK14] Length = 900 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 35/167 (20%) Query: 63 APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTRT 112 AP + D + + H FD+ + F + + V T ++ Sbjct: 68 APYFNEVAEDIYDQIKDCIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTLELFKIAFP 127 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD----------------WSADDL-SDEQLQYAAS 155 + L + + I + KA +D + + L + +QL Y + Sbjct: 128 TDKSYQLSELAQAH-DIPLDKAH-RADEDATTTAKLMIKAFKKFESLPLDTQKQLYYLSK 185 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS---CCNFLMDRAELDLLGWE 199 ++ + L E + R +S ++ R ++DL G + Sbjct: 186 NLKY--DLYNILFEMV-RTNQSKPLDDQFGQFEQIIYRKQVDLKGPQ 229 >gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408] Length = 1462 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 38/147 (25%), Gaps = 37/147 (25%) Query: 14 ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67 + + D ET GL D ++Q++ G+ + Sbjct: 416 DMELSNATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472 Query: 68 GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99 L E+ K + H FD+ + + +P Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126 V T +R +HGL K Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559 >gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] Length = 726 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 3/82 (3%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102 G G+V ++ +A G++ ++ L D K F+ + G+ + P C Sbjct: 117 CDG-GSVQLVDLAQGEEIPAKILDALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHC 175 Query: 103 TKIASRLTRTYTNQHGLKDNLK 124 T+I + + + + LK Sbjct: 176 TQIRALMLGLPASLQSCGEVLK 197 >gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. G11MC16] gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. G11MC16] Length = 911 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 26/124 (20%) Query: 78 IFHYGRFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L G P T +R+ + L D K+ LG++ Sbjct: 88 VAHNVDFDLPFLQAELERAGWPPFTGPTIDTVELARIVLPTAESYKLGDLAKQ-LGLHHD 146 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT-SCCNFLMDRA 191 + Q A SD L + L+RLGR L T L+ Sbjct: 147 RPHQ----------------ADSDAEVTAKLFIAL---LERLGRLPLVTLEQLRRLVHHL 187 Query: 192 ELDL 195 + D+ Sbjct: 188 KSDI 191 >gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316] gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316] Length = 1490 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 71/221 (32%), Gaps = 56/221 (25%) Query: 17 ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPG------DGTVDI-IRIAAGQKNAPNL 66 + V A+ D ET GL P D++ V++ G VD I I+ + Sbjct: 454 LKGVPAVVFDIETTGLSPTEDKIIEIGAVKMLDGVVVDKFSEFVDPKIPISPATTKLTTI 513 Query: 67 V------GMLVDEKREK----------IFHYGRFDIAVLF---YTFGVRVR-PVFCTKIA 106 L+D K + H FDI+ + G++ T Sbjct: 514 TDDMVIGAPLIDAVVPKFVEFCGDCVLVGHNVGFDISFIIENCRRLGIKKEFTCIDTMGL 573 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 SR +H L+ K L +N EQ A SD + Sbjct: 574 SRAFYPQQAKHSLEAVCKTLKVVN-----------------EQHHRAISDAECTAEIFKI 616 Query: 167 FTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVDIFSHS 207 F EKL G DL + + ELD+ + + HS Sbjct: 617 FQEKLYEKGIYDL-----DAIKAIEELDIEAVKRL----HS 648 >gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 906 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 51/154 (33%), Gaps = 34/154 (22%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101 + G+G I A + L L D K H + D+A G + V Sbjct: 364 ADGEGR-YIDTSALQPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWTLAGVT 418 Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI----SKAQQSSDWSADDL------SDEQL 150 T +A+ L R L+D L + ++ QQ S L +D+Q Sbjct: 419 SDTALAAYLVRPGQRSFSLEDLSLRYLRRELRAETAEQQQLS------LLDDNDGTDDQ- 471 Query: 151 QYAASDVVHLH-----ALRLQFTEKLQRLGRSDL 179 A + L L E+L R+ + L Sbjct: 472 ---AVQTLILRAVAVLDLADALDEELARINSTSL 502 >gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4] gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4] Length = 1433 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L F + + PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442] gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442] Length = 1433 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L F + + PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella dagmatis ATCC 43325] gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella dagmatis ATCC 43325] Length = 253 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 53/191 (27%), Gaps = 56/191 (29%) Query: 18 RYVDAIAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI 56 + I +DTET G+ + CI+++ D VD I Sbjct: 6 QPTRQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPDRPVDPDAI 65 Query: 57 ------AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR--------V 97 + P + + E + H FDI + Y F + Sbjct: 66 KVHGITDEMLADKPTFNEIAQQFIEYIQGAELLIHNASFDIGFMDYEFSKLNIGLNTSEI 125 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 + T +R ++ L LGI+ SK L A D Sbjct: 126 CLITDTLQMAR-QMYPGKRNSLDALCDR-LGIDNSKRT--------------LHGALLDA 169 Query: 158 VHLHALRLQFT 168 L + L T Sbjct: 170 EILADVYLTMT 180 >gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440] gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440] Length = 899 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVF-CTKIASRLTR 111 + L G L D R K+ H + AVL F G ++ + T+IA+ L R Sbjct: 365 DPGRLDAADEDALAGWLADVSRPKVLHDSK--PAVLAFAARGCAIQGIARDTQIAAYLAR 422 Query: 112 TYTNQHGLKDNLKELLGINI 131 + L D L + Sbjct: 423 PDQRSYDLTDLALRYLHREL 442 >gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20] gi|1169396|sp|P43745|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae Rd KW20] Length = 256 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 56/201 (27%), Gaps = 61/201 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQL---------SPGDGTVDIIRIAAGQK--------- 61 I +DTET G+ + CI+++ G+ I+ Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVHGI 67 Query: 62 ------NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFTEKLQRLGRSDLATSC 183 + L T G+++L Sbjct: 172 VYLMMTG-----GQTNLFDEE 187 >gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355] Length = 1462 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSVFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCKDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642] Length = 921 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 14/128 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111 L +L D + K+ + +F I +L G+ ++ V F T + S + Sbjct: 383 DTVLKALKPLLEDPDKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 442 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165 + +H + + L Q + A LS +Q+ YAA + L Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 502 Query: 166 QFTEKLQR 173 F +L Sbjct: 503 VFDARLAA 510 >gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM 16841] gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM 16841] Length = 1512 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 23/131 (17%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG----VRVRPVFCTKIASR 108 +I ++ P + + + H FD++ + R + T +R Sbjct: 548 VIDAPKIEEILPEFMK-FCEGAIM-VAHNAEFDMSFIKKNCKDQGIEREFTIIDTVALAR 605 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + N+ L + + L +++ + A D + ++F Sbjct: 606 ILLPNLNRFKLDT-VAKALNVSLENHHR----------------AVDDAACTAEIFVKFI 648 Query: 169 EKLQRLGRSDL 179 E L+ G +L Sbjct: 649 EMLKERGMENL 659 >gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 437 Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 14/103 (13%) Query: 81 YGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 ++D VL G+ +R + F T + S + + +H + L K D Sbjct: 1 NLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKH---KTITFED 56 Query: 140 W---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173 + L+ Q+ +YAA D L L+ +LQ+ Sbjct: 57 IAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 99 >gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942] gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942] Length = 1437 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 33/158 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 PA I D ET GL D L V++ G+ I Sbjct: 411 PAHRLLEEDTYIVFDVETTGLSAVYDTIIELAAVKIRGGEIIDKFERFANPHHPLSATTI 470 Query: 55 RIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR------P 99 + + AP+++ ++ D + + H FD+ L + ++ P Sbjct: 471 ELTGITDDMVRDAPDVIDVVRDFREWIDDDILVAHNASFDMGFLNVAYKRLLKVEKAQNP 530 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T R H L K+ I +++ ++ Sbjct: 531 VIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567 >gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1554 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 7/91 (7%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASR 108 ++ P + + D + H FD+ + + G+ P V T +R Sbjct: 590 VLPYPKIDVILPQFLDFVGDA--VLVAHNASFDVGFISHFAEEQGLHFNPTVLDTVTIAR 647 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 L N+ L + + L I+++ ++ D Sbjct: 648 LLLPNLNRFKLDT-VAKALNISLANHHRAVD 677 >gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum] Length = 1152 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 6/84 (7%) Query: 44 LSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 G + + + G KN D K++H FD V+ G +V Sbjct: 422 FGDGKSCIWVDVLDGGGKNLLVEFAPFFQDPSIRKVWHNYSFDNHVIENY-GFKVSGFHA 480 Query: 102 CTKIASRL---TRTYTNQHGLKDN 122 T +RL +R + + L+ Sbjct: 481 DTMHMARLWDSSRRTSGGYSLEAL 504 >gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330] Length = 1462 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115] Length = 1462 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353] Length = 1462 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 922 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 15/120 (12%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A+DTET L P R+ + L+ G + +A P L L Sbjct: 344 ALDTETTSLDPLAARIVGISLAVAPGEAAYLPLAHDYPGVPAQLPCDEVLARLKSWLESP 403 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTN---QHGLKDNLKELLGI 129 KI + ++D VL G+ + V T + S + + + H L LG+ Sbjct: 404 GHAKIGQHLKYDQHVLANH-GIALAGVRHDTLLQSYVLESGKDGVRGHDLGQLATRHLGL 462 >gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17] gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17] Length = 1433 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L F + + PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059] Length = 1462 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160] Length = 1462 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44] gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44] Length = 1433 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L F + + PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087] Length = 1462 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150] Length = 1462 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72] gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72] Length = 734 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 23/117 (19%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRTYTNQHG 118 P+ D + H FD+ L G+R +PV T + S + + H Sbjct: 616 LPSFHAFAADT--VLVAHNAAFDMRFLQLKEDLTGLRFDQPVLDTLLLSAVIHPNQDSHR 673 Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 L+ + LGI + A D + + L+ L G Sbjct: 674 LEAIAER-LGITVVGRHT----------------ALGDAMVTAEVFLKLVPLLAEKG 713 >gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1] gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1] Length = 242 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 54/179 (30%), Gaps = 54/179 (30%) Query: 26 DTETLGLMPRRDR---LCIVQLS--------------PGDGTVDII-RIAAGQKNA---- 63 DTET GL PR DR L V+L+ P +V + G +A Sbjct: 7 DTETTGLDPREDRVIELGCVELANRFPTGRTLHYFINPQGRSVHPDAQAVHGISDADLAG 66 Query: 64 -PNLVGML------VDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTK-IASRL 109 P +L +D + + H FDI + F + V T IA R Sbjct: 67 KPVFAEILDEFLEFIDGAKL-VAHNANFDIGFINAEFQRVGQPYIDPARVIDTLAIARRK 125 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 N L + I + ++ A D L + ++ Sbjct: 126 HPMGPN--SLDALCRRY---GIDNSHRT------------KHGALLDAELLAEVYIELA 167 >gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68] Length = 385 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101 + DG V++ I AG L + + FH FD VL Y PV Sbjct: 37 AINDGPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 96 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 T + + L G L E+LG+ K Sbjct: 97 DTMVQA-LAHGLPGSLG---ELCEILGVPQDK 124 >gi|170102162|ref|XP_001882297.1| predicted protein [Laccaria bicolor S238N-H82] gi|164642669|gb|EDR06924.1| predicted protein [Laccaria bicolor S238N-H82] Length = 900 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 116 QHGLKDNLKELLGINISKAQQ---SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 + L + +LG ++K S++W +LS +Q+ Y A D + + +L+ Sbjct: 310 RVSLTELSALVLGFKLNKDDAIRVSTEWENINLSQDQIMYIAQDAHASKCIYEKLV-QLE 368 Query: 173 RLG 175 + G Sbjct: 369 KYG 371 >gi|258570479|ref|XP_002544043.1| predicted protein [Uncinocarpus reesii 1704] gi|237904313|gb|EEP78714.1| predicted protein [Uncinocarpus reesii 1704] Length = 462 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 9/73 (12%) Query: 70 LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--HGLKDNLKELL 127 ++ + I H D+ VL G+ + ++I ++ T + GLK + L Sbjct: 299 FMNPQTILIGHSLANDLKVL----GMVHTRIVDSEILTKKAVGPTCKRVWGLKTLCETFL 354 Query: 128 GINI---SKAQQS 137 GI I K S Sbjct: 355 GIRIQAGKKGHSS 367 >gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 239 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 51/185 (27%), Gaps = 56/185 (30%) Query: 23 IAVDTETLGLMPRR-DRLCIVQLS---------PGDGTVDIIRIAAGQK----------- 61 I +DTET GL R DR ++++ G I G Sbjct: 4 IVLDTETTGLDWRTGDR--VIEIGCVELVNRSLTGRHFHVYINPDRGIDAEAVAVHGITE 61 Query: 62 ----NAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTK 104 + P G+ D E + H FD+ L G+ RP V T Sbjct: 62 EFLADKPRFAGIVEAFEDFVRDAELVIHNANFDVGFLNCELGLLGRPKLDVLCAGVIDTL 121 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 ++ + + L I ++ L A D L + Sbjct: 122 RMAK-EQNPGKKASLDALCDRY---EIDNGHRT------------LHGALLDAELLAEVY 165 Query: 165 LQFTE 169 L T Sbjct: 166 LAMTR 170 >gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846] Length = 255 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 56/201 (27%), Gaps = 61/201 (30%) Query: 23 IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G L + CI+++ D VD I Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFTEKLQRLGRSDLATSC 183 + L T G+++L Sbjct: 172 VYLMMTG-----GQTNLFDEE 187 >gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152] gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152] Length = 910 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 3/90 (3%) Query: 44 LSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 ++ DG I + + L L D K H + + L G + + Sbjct: 365 IAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAKSAMHAL-RGRGWTLGGLTS 423 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +A+ L R L D L + Sbjct: 424 DTALAAYLVRPGQRSFNLDDLSLRYLHREL 453 >gi|319898105|ref|YP_004136302.1| DNA polymerase iii epsilon subunit [Haemophilus influenzae F3031] gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031] Length = 256 Score = 37.3 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 51/186 (27%), Gaps = 56/186 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D VD I Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFT 168 + L T Sbjct: 172 VYLMMT 177 >gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense SS-5] gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense SS-5] Length = 205 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 24/126 (19%) Query: 52 DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL----FYTFGVRVR-PVFCTKIA 106 +I ++ P+ + + I H +FDI+ L F G ++ PV CT + Sbjct: 70 LVIDKPKIEQVFPHFLEFTKNSII--IAHNAKFDISFLNEASFQLTGKLIQNPVICTLVL 127 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 + L + I + + A +D + L + Sbjct: 128 ANRLFPDLKSKSLTNLAYHF-NIPYHRKHR----------------ALADAEVTYELFKK 170 Query: 167 FTEKLQ 172 F E LQ Sbjct: 171 FVEYLQ 176 >gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3] Length = 229 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 54/178 (30%) Query: 26 DTETLGLMPRRDRL----------------CI-VQLSPGDGTVDIIRIAA-GQKN----- 62 DTET GL R DR+ + + ++PGD V +A G + Sbjct: 7 DTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLKD 66 Query: 63 -------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRL 109 A ++ D K I H FD+ + F + V T +R Sbjct: 67 KKAFAEVAEEILAFFGDAK--WIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARR 124 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L + + + ++ A D L + ++ Sbjct: 125 KHPMGPN-SLDALCRRY---GVDNSHRA------------KHGALLDSELLAEVYIEM 166 >gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis] Length = 1437 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 33/158 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 A + D ET GL D L V++ G+ II Sbjct: 411 AAHRLLEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATII 470 Query: 55 RIAAGQKN----APNLVGMLVDEKR-----EKIFHYGRFDIAVLFYTFGVRV------RP 99 + + AP++V ++ D + + H FD+ L + + P Sbjct: 471 ELTGITDDMLQDAPDVVDVIRDFRVRIGDDILVAHNASFDMGFLNVAYKKLLEVEKAKNP 530 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T R H L K+ I +++ ++ Sbjct: 531 VIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567 >gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] Length = 925 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 8/92 (8%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPV 100 ++ G T I + L L D + H G L + G+ + Sbjct: 361 ITQGKQTAIINMSRTTDDDRDALKEWLQDPDHPIVVHDG----KGLLHMLSSEGLTATNI 416 Query: 101 -FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T++AS L L+ ++ LG ++ Sbjct: 417 EHDTRLASYLIHPDFGSFDLESVVRRRLGRDL 448 >gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 824 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109 + + G + +K++H FD V+ G+++ T +RL Sbjct: 103 VDTLRGGDGVWEVFKEYFENANVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARL 160 >gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16] gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16] Length = 1430 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 15/102 (14%) Query: 50 TVDIIRIAAGQKN----APNLVGMLV-----DEKREKIFHYGRFDIAVL---FYTFGV-- 95 + II + + AP +L + H FDI L + G Sbjct: 461 SATIIELTGITDDMVQGAPEPAEVLKQFREFAGNATLVAHNASFDIGFLNVGYKKLGFSE 520 Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T R H L K+ I + ++ Sbjct: 521 VTNPVIDTLELGRFLYPELKNHRLNTLCKKF-DIELVSHHRA 561 >gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K] gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K] Length = 1072 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 16/128 (12%) Query: 18 RYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65 VD A D ET L P ++ + ++ LS +G I + N N Sbjct: 212 DGVDITAWDLETNSLKPDKEGSKPLVLSLSWRNGQGVTIPLYKSDFNWENGQDDIDEVLE 271 Query: 66 -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYT--NQHGLKD 121 L L ++ K+ H G++DI L T + + TK+ L T L D Sbjct: 272 LLKNWLASKEDIKVAHNGKYDIKFLMSTENFKDFESIQDTKVGWYLAVTQEVKESLRLSD 331 Query: 122 NLKELLGI 129 E+ + Sbjct: 332 LAYEVTDV 339 >gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] Length = 939 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 8/75 (10%) Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVF-CTKIASRLTRTYTNQ 116 + L L D K D+ + + G + + T +A+ L + Sbjct: 411 DDEAALGEWLADPAVPK----ASHDVKAVLHALRGRGWTLAGLTSDTALAAYLAKPGQRS 466 Query: 117 HGLKDNLKELLGINI 131 L D L + Sbjct: 467 FDLADLALRYLRREL 481 >gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98] Length = 1433 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L F + + PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELARFLFPDMKNHRLNTLCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|242079315|ref|XP_002444426.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor] gi|241940776|gb|EES13921.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor] Length = 112 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 14/27 (51%) Query: 148 EQLQYAASDVVHLHALRLQFTEKLQRL 174 +Q+ YA D +L + ++LQR Sbjct: 2 DQVLYAREDTHYLLYIYDLMRQRLQRE 28 >gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family [Pseudovibrio sp. JE062] gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family [Pseudovibrio sp. JE062] Length = 471 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 54/160 (33%), Gaps = 37/160 (23%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----------PGDGTVDIIRIAAGQK- 61 + + + + DTET GLMP +D + VQ+ PG+ ++ Sbjct: 270 EQQLLKDLSFVVFDTETTGLMPNKDEI--VQIGAVRVVNRRIIPGETVDQLVNPGRPIPA 327 Query: 62 --------------NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYT----FGVRVR 98 NAP+ V D + + H FD+A L V Sbjct: 328 ASTGVHRITDDMVVNAPDPVTATSDFHVFAKDAVIVAHNAPFDMAFLQRYGHMSGHVWDH 387 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 P+ T + S + +H L L I I +A + + Sbjct: 388 PILDTVLLSAVVFGAEQEHTLDALCAR-LDIEIPEALRHT 426 >gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus pumilus ATCC 7061] gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus pumilus ATCC 7061] Length = 1437 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 35/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 P + D ET GL D L V++ G+ I Sbjct: 411 PEHRLLEDATYVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDRFEAFANPHHPLSATTI 470 Query: 55 RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRVR------ 98 + + AP++V ++ D + + H FD+ L + ++ Sbjct: 471 ELTGITDDMVKDAPDVVDVVRDFKEWIGQDIL-VAHNASFDMGFLNTAYKRLLKTDKASN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T R H L K+ I +++ ++ Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567 >gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare Y25] gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare Y25] Length = 224 Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 22/96 (22%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVF------CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + H FD+ L G +P+ T + +R R Q+ L + GI+ Sbjct: 82 VIHNAAFDVKFLNAELGWVKKPLIAPARAVDTLLIAR-RRFPGAQNSLDALCRRF-GIDN 139 Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 SK L A D L + L+ Sbjct: 140 SKRT--------------LHGALLDSEILAEVYLEL 161 >gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] Length = 885 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 7/83 (8%) Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108 GT I A P L V+ IFH + + P T +A Sbjct: 367 GTAGIEPAALAGTLEPLLR---VNP----IFHDAKRALVWFSNAGAGVADPGGDTMVAGY 419 Query: 109 LTRTYTNQHGLKDNLKELLGINI 131 L ++H L + E L + + Sbjct: 420 LLNPSASRHDLPELCLEHLNLAL 442 >gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus thermodenitrificans NG80-2] gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] Length = 911 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 25/111 (22%) Query: 78 IFHYGRFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L G P T +R+ + L D K+ LG++ Sbjct: 88 VAHNVDFDLPFLQAELERAGWPPFTGPTIDTVELARIVLPTAESYKLGDLAKQ-LGLHHD 146 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183 + Q A SD L + L+RLGR L T Sbjct: 147 RPHQ----------------ADSDAEVTAKLFIAL---LERLGRLPLVTLE 178 >gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Corynebacterium matruchotii ATCC 14266] Length = 444 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 11/86 (12%) Query: 57 AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV----F-CTKIA 106 +AP+ + + + + H +FD+ PV F C+ A Sbjct: 158 PDMVTDAPDFAAVFPEVVAYVADQVLVAHNAQFDLTAFSRACHATGTPVPHWKFACSLAA 217 Query: 107 SRLTRTYTNQHGLKDNLKELLGINIS 132 SR + H L + + LG+ + Sbjct: 218 SRAAKLGITSHRL-PVVAQHLGVELD 242 >gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180] gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM 180] Length = 240 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 57/186 (30%), Gaps = 58/186 (31%) Query: 23 IAVDTETLGLMPRRD-RL----C--IV-----------------QLSPGDGTVDIIRIAA 58 I +DTET GL PR R+ C +V Q+ V I A Sbjct: 4 IVLDTETTGLEPREGHRIIEIGCVELVDRRPTGRNFHEYLNPERQIDAEAEAVHGISNAF 63 Query: 59 GQKN------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----------VRPVFC 102 A LV L E I H FD+ L + FG+ + V Sbjct: 64 LADKPRFAERAERLVEYLR--GAELIIHNAAFDVGFLDHEFGLWRGAEAPRIADLCTVTD 121 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 + + +R ++GL K I + ++ L A D L Sbjct: 122 SLLMARKLHP-GQRNGLDALCKRYA---IDNSHRT------------LHGALLDAEILAD 165 Query: 163 LRLQFT 168 + L T Sbjct: 166 VYLAMT 171 >gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032] gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus SAFR-032] Length = 1437 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 35/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 P + D ET GL D L V++ G+ I Sbjct: 411 PEHRLLEDATYVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDRFEAFANPHHPLSATTI 470 Query: 55 RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRVR------ 98 + + AP++V ++ D + + H FD+ L + ++ Sbjct: 471 ELTGITDDMVRDAPDVVDVVRDFKEWIGQDIL-VAHNASFDMGFLNTAYKRLLKTDKASN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T R H L K+ I +++ ++ Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567 >gi|125557002|gb|EAZ02538.1| hypothetical protein OsI_24647 [Oryza sativa Indica Group] gi|125598888|gb|EAZ38464.1| hypothetical protein OsJ_22848 [Oryza sativa Japonica Group] Length = 159 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 10/127 (7%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 R +QL G + A L L DE+ + + R D L G+ V Sbjct: 15 RPGTLQLCAGHRCLVFQLAHADAAVPAALRRFLADERVVFVGYGVRSDCRKLEEQHGLEV 74 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLG----INISKAQQSSDWSADDLSDEQLQYA 153 T L + +E LG + +S W A LS EQ+QYA Sbjct: 75 AR---TVELRSLAGMGNTSM--QRMAEEHLGWDGVTTKPRKVGTSRWDARRLSKEQVQYA 129 Query: 154 ASDVVHL 160 D +L Sbjct: 130 CVDA-YL 135 >gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] Length = 623 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 64/213 (30%), Gaps = 55/213 (25%) Query: 1 MTTIRVHEGDIPAE-----CAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGD---G 49 MT ++ D+P A R + VD ET G DR + V++ G+ Sbjct: 33 MTVEQLSFEDLPEADEFTRSALRDTTFVVVDLETTGGSADDDRITEIGAVKIRGGEVLGE 92 Query: 50 TVDIIRI---------------AAGQKNAPNLVGML-----VDEKREKIFHYGRFDIAVL 89 ++ A +AP + +L + H RFD+ L Sbjct: 93 FATLVDPGRAIPPQIVALTGITTAMLYDAPRIEEVLPAFAEFARGTVLVAHNARFDMGFL 152 Query: 90 FYTFG--VRVRPV---FCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142 + P CT + +R L+R L EL +++ + Sbjct: 153 RKSAARMRLPWPFSTSLCTVVMARRILSRQEAPTVKLSAL-AELFQVSVRPTHR------ 205 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 A D + + E++ G Sbjct: 206 ----------ALDDARATVEVFHRLLERVGNQG 228 >gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans PD1222] Length = 706 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 21/106 (19%) Query: 74 KREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 + H FD+ L G+R +PV T + + + + + H L+ LG+ Sbjct: 597 DTVLVGHNVAFDMRFLQLKEAATGLRFDQPVLDTLLLASIAQPHEPSHSLEAIAAR-LGV 655 Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 I Q A SD + + L+ L+ G Sbjct: 656 EI----------------TQRHNALSDALVTAEVFLRLLPLLKARG 685 >gi|294632014|ref|ZP_06710574.1| ribonuclease D [Streptomyces sp. e14] gi|292835347|gb|EFF93696.1| ribonuclease D [Streptomyces sp. e14] Length = 120 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 3/44 (6%) Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGT 50 D A +AVD E R +VQL GDG Sbjct: 53 DRAVAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGDGA 96 >gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4] gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4] Length = 236 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 50/181 (27%), Gaps = 54/181 (29%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-------------------PGDGTVDIIRIA------ 57 I DTET GL + DR ++++ P D + +A Sbjct: 4 IVFDTETTGLESKLDR--VIEIGGIELFNHFPTGRSFHVYINPADRAIHPDALAVHGITP 61 Query: 58 AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR------VRPVFCTKIA 106 K+ P ++ D + + + H FD+ + F V T Sbjct: 62 EFLKDKPVFADIVEDLVAFFDGAKWVAHNATFDMGFINAEFERLGRPLVGPEHVIDTLSL 121 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 +R L + I + ++ A D L + ++ Sbjct: 122 ARRKHPMGPN-SLDALCRRY---GIDNSHRT------------KHGALLDSELLAEVYIE 165 Query: 167 F 167 Sbjct: 166 M 166 >gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24] gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24] Length = 955 Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 11/129 (8%) Query: 9 GDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCI-VQLSPGDGTVDIIRIAAGQKNAPN 65 ++ A AA A+AVD + D + + DG I ++ A N Sbjct: 379 AELSAFLAAGAGQRSAVAVDL--VPGRIGEDAAALAI---VRDGAAVYIDLSGQDAEAEN 433 Query: 66 -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNL 123 L L D + K+ H + + L G+ + V T I+ L + + L + Sbjct: 434 VLAAWLRDPEAPKVMHGFKAALKALSAR-GLELEGVVDDTSISGYLIQPDRRTYELAELA 492 Query: 124 KELLGINIS 132 + L I IS Sbjct: 493 QHHLNIEIS 501 >gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301] gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301] Length = 235 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 56/187 (29%), Gaps = 60/187 (32%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP-------------------------GDGTVDIIRIA 57 I +DTET GL + +++++ G V I + Sbjct: 4 IFLDTETTGLYHAQGH-RVIEVAAVEVINRRLTKQHFHYYLNPDREIDQGAQEVHGISLE 62 Query: 58 AGQKNAPNLVGMLVDEKR------EKIFHYGRFDIAVLFYTFGV--------RVRPVFCT 103 Q + P+ + +E E I H FD+ L FG+ + T Sbjct: 63 FLQ-DKPHFADI-ANELIAFIADSELIMHNAPFDVGFLNREFGLIEQKPVEAITAKITDT 120 Query: 104 -KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 KIA + N L K GI+ SK L A D L Sbjct: 121 LKIAKEMRPGQRN--SLDALCKHY-GIDNSKRT--------------LHGALLDAELLAD 163 Query: 163 LRLQFTE 169 + + T Sbjct: 164 VYMAMTR 170 >gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056] Length = 866 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%) Query: 22 AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72 + D ET GL D ++Q++ G+ + L Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480 Query: 73 ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107 E+ K + H FD+ + + +PV T + Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540 Query: 108 RLTRTYTNQHGLKDNLKEL 126 R +HGL K Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559 >gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408] gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408] Length = 1450 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53 A A + D ET GL D L V++ G D +D Sbjct: 415 DAREALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474 Query: 54 ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100 + G K+ ++ M + + + H FD+ L + +G+ PV Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T +R + GL K+ G+++ + ++ Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570 >gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365] gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365] Length = 930 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 8/63 (12%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLTR 111 A L +L D E + H D+ L P+ T +A+ L Sbjct: 393 PAQWSALPEALRALLADPAVEIVAH----DVKSLARLLRTLDAPLAGVLGDTMLAAYLLG 448 Query: 112 TYT 114 Sbjct: 449 QEG 451 >gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str. McKiel] gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str. McKiel] Length = 229 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 27/115 (23%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113 A + + + D K I H FDI L + + + T + +R + Sbjct: 77 ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRTEIKLLELANTIDTLVMAR-SMFP 133 Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 ++ L K D S Q+ A D L + + T Sbjct: 134 GAKYNLDALCKRF----------KVDNSGR-----QVHSALKDAALLAEVYVALT 173 >gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] Length = 1025 Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%) Query: 43 QLSPGDGTVD----IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 Q GDG +I + L +L K+ +F AVL G+ +R Sbjct: 473 QSGDGDGLFAAGLAPDQIGP-RDALDALKPILESAGVAKVGFAIKF-AAVLLAQHGLTLR 530 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + ++ S H L + LG + Sbjct: 531 NIDDPQLMSYALDAGRGSHALDALSESNLGHTL 563 >gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313] gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313] Length = 1437 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 36/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIRIAAGQKN 62 PA + + D ET GL D+ +++LS + + I + + Sbjct: 411 PAHVELADAEYVVFDVETTGLSAAYDK--VIELSAVKMVKGNVIAEFSEFIDPGFSLSQT 468 Query: 63 APNLVGMLVD----EKREK---------------IFHYGRFDIAVL-----FYTFGVRVR 98 +L + D K EK + H FD+ + + G Sbjct: 469 TVDLTSITDDMVRGSKSEKEVFTAFREFYGDAILVGHNVTFDMGFMNEGYERHGMGSITN 528 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T +R + L K G+ + + ++ Sbjct: 529 PVIDTLTLARFLYPNMRSYRLNTLAKHF-GVLLEQHHRA 566 >gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum] Length = 1152 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 6/84 (7%) Query: 44 LSPGDGTVDIIRIA-AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 G + + + G+ D K++H FD V+ G +V Sbjct: 422 FGDGKSCIWVDVLDGDGKNLLVEFAPFFQDPSIRKVWHNYSFDNHVIENY-GFKVSGFHA 480 Query: 102 CTKIASRL---TRTYTNQHGLKDN 122 T +RL +R + + L+ Sbjct: 481 DTMHMARLWDSSRRTSGGYSLEAL 504 >gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup] gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup] Length = 969 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 28/191 (14%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---------- 66 A+ A +TET L P + +L L+ I + + +L Sbjct: 375 AQEQGFFAFNTETTSLDPMQAKLVGFSLALQPEKAAYIPLEHFDEGEEDLLRGGHIASQI 434 Query: 67 ---------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 +L D KI ++D V+ + + T + S H Sbjct: 435 ETRKALALLKPILEDSSVLKIGQNIKYDWLVMKQY-DIIISSFDDTMLLSYAFDAGILTH 493 Query: 118 GLKDNLKELLGIN-IS-KAQQS-----SDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 + D + L IS K + ++ DL L YAA L + Sbjct: 494 NMDDLSERWLKHKPISYKDLTHNGKKITSFAQVDLKQATL-YAAERADITLRLWQVLKPQ 552 Query: 171 LQRLGRSDLAT 181 L G + + Sbjct: 553 LVARGMTKIYE 563 >gi|22831293|dbj|BAC16147.1| hypothetical protein [Oryza sativa Japonica Group] gi|24414039|dbj|BAC22288.1| hypothetical protein [Oryza sativa Japonica Group] Length = 195 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 10/127 (7%) Query: 38 RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97 R +QL G + A L L DE+ + + R D L G+ V Sbjct: 51 RPGTLQLCAGHRCLVFQLAHADAAVPAALRRFLADERVVFVGYGVRSDCRKLEEQHGLEV 110 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLG----INISKAQQSSDWSADDLSDEQLQYA 153 T L + +E LG + +S W A LS EQ+QYA Sbjct: 111 AR---TVELRSLAGMGNTSM--QRMAEEHLGWDGVTTKPRKVGTSRWDARRLSKEQVQYA 165 Query: 154 ASDVVHL 160 D +L Sbjct: 166 CVDA-YL 171 >gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD] Length = 1457 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 7/64 (10%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLK 120 + + + + H RFD L F +PV T SR +H LK Sbjct: 477 IKQIFQN-SIL-VAHNARFDYGCLVEFFKELELYELEQPVIDTLEVSRFLAPTQKRHNLK 534 Query: 121 DNLK 124 + K Sbjct: 535 ELAK 538 >gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1] gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1] Length = 1457 Score = 36.9 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 7/64 (10%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLK 120 + + + + H RFD L F +PV T SR +H LK Sbjct: 477 IKQIFQN-SIL-VAHNARFDYGCLVEFFKELELYELEQPVIDTLEVSRFLAPTQKRHNLK 534 Query: 121 DNLK 124 + K Sbjct: 535 ELAK 538 >gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp. zooepidemicus] gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus] gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp. zooepidemicus] Length = 1465 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 5/54 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD+ + Y +PV T +R +HGL K Sbjct: 509 VAHNASFDVGFMNANYDRYGLAKISQPVIDTLELARNLYPEYKRHGLGPLTKRF 562 >gi|325087366|gb|EGC40676.1| exonuclease [Ajellomyces capsulatus H88] Length = 782 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 47/161 (29%), Gaps = 39/161 (24%) Query: 5 RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60 V + DI + +++D E T G + R+ +V DG V + + Sbjct: 376 TVLKNDIQLGSITAGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDDLVKPDK 432 Query: 61 -------------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 L+ +L I H D++ L Sbjct: 433 PIIDYLTRFSGITKEMLEPVTTRLPDVQQKLLTLLTPRTIL-IGHSLNSDLSALK----- 486 Query: 96 RVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 P + T I R + LK ++ LG I K Q Sbjct: 487 LTHPFIVDTSIIYPHPRGPPLKSSLKWLSQKYLGKEIQKGQ 527 >gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501] gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501] Length = 1450 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53 A A + D ET GL D L V++ G D +D Sbjct: 415 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474 Query: 54 ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100 + G K+ ++ M + + + H FD+ L + +G+ PV Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T +R + GL K+ G+++ + ++ Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570 >gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636] gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636] Length = 1450 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53 A A + D ET GL D L V++ G D +D Sbjct: 415 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474 Query: 54 ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100 + G K+ ++ M + + + H FD+ L + +G+ PV Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T +R + GL K+ G+++ + ++ Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570 >gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1071] gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1679] gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium U0317] gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933] gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1071] gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1679] gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium U0317] Length = 1450 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53 A A + D ET GL D L V++ G D +D Sbjct: 415 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474 Query: 54 ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100 + G K+ ++ M + + + H FD+ L + +G+ PV Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T +R + GL K+ G+++ + ++ Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570 >gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2] Length = 238 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 33/125 (26%) Query: 60 QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR----------PVFCTK 104 + P + D + + H FD+ + + FG+ + V T Sbjct: 64 LTDKPTFRDVAEDFVNFIRGAQLVIHNAPFDVGFMDHEFGMEPKTRGVITKDICSVLDTL 123 Query: 105 -IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 +A ++ N L K I + + +L A D L + Sbjct: 124 AVARKMHPGQKN--NLDALCKRY---GIDNSHR------------ELHGALLDAEILADV 166 Query: 164 RLQFT 168 L T Sbjct: 167 YLLMT 171 >gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326] Length = 921 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117 L +L D + K+ + +F I +L G+ ++ V F T + S + + +H Sbjct: 389 LKPLLEDPGKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRH 448 Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171 + + L Q + A L+ +Q+ YAA + L F +L Sbjct: 449 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 508 Query: 172 QR 173 Sbjct: 509 AA 510 >gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039] gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039] Length = 1450 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53 A A + D ET GL D L V++ G D +D Sbjct: 415 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474 Query: 54 ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100 + G K+ ++ M + + + H FD+ L + +G+ PV Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T +R + GL K+ G+++ + ++ Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570 >gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 1465 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 5/54 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD+ + Y +PV T +R +HGL K Sbjct: 509 VAHNASFDVGFMNANYDRYGLAKISQPVIDTLELARNLYPEYKRHGLGPLTKRF 562 >gi|167464945|ref|ZP_02330034.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase domains [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384415|ref|ZP_08058101.1| hypothetical protein PL1_0947 [Paenibacillus larvae subsp. larvae B-3650] gi|321150773|gb|EFX44233.1| hypothetical protein PL1_0947 [Paenibacillus larvae subsp. larvae B-3650] Length = 358 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 22/134 (16%) Query: 81 YGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLK---ELLGINISKAQQ 136 R+D+ V G +R V+ T A L + ++GLK ++ + GI Sbjct: 3 SARYDLHVAQND-GYEIRGCVWDTLDAMHLLNEHEEKYGLKILVEKYGKYFGIPGP-IYT 60 Query: 137 SSDW----SADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL-GRSDLATSCCNFLMDR 190 D S S E + YA DV++ L E +++ GR C Sbjct: 61 FEDLFGNGSPAPFSVELVGIYAIKDVLYSWKLCEWQMEMMRKSPGRL---LECY------ 111 Query: 191 AELDLLGWENVDIF 204 AE+D VD+F Sbjct: 112 AEID-SKLPEVDVF 124 >gi|157873497|ref|XP_001685257.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128328|emb|CAJ08493.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 891 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%) Query: 118 GLKDNLKELLGINISKAQQ--SSDWS--ADDLSDEQLQYAASDVV 158 LK+ L G + K SDW L+ Q++YAA D Sbjct: 214 SLKNMCSALTGRELGKDMAVVMSDWGGCHGALTPLQIEYAAQDAE 258 >gi|224541223|ref|ZP_03681762.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM 15897] gi|224525868|gb|EEF94973.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM 15897] Length = 212 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 23/104 (22%) Query: 74 KREKIFHYGRFDIAV----LFYTFGVRVRP-VFCT-KIASRLTRTYTNQHGLKDNLKELL 127 I H RFDI L +GV + T KIA +L ++ LKD Sbjct: 107 NDVIIGHNVRFDIRFIYDALLRDYGVLFQNDYIDTLKIARKLLHEDLKRYRLKDLADHY- 165 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 +I + + A +D H + E + Sbjct: 166 --HIDYSH-----AHR---------AVNDCEITHDVYEMMMEDI 193 >gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] Length = 596 Score = 36.9 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 30/112 (26%), Gaps = 34/112 (30%) Query: 74 KREKIFHYGRFDIAVLFY--TFGVRVRPV-----FCTKIASRLTRTYTNQHGLKDNLKEL 126 I H RFD AV F G+ + + + L L ++L Sbjct: 79 DCVWISHNARFDRAVFFRMKELGIVPAHIMPREWHDS---AALAVYLQAPRNLAGAAEKL 135 Query: 127 LGINISKAQQSSDWSADDLSDEQ--------------LQYAASDVVHLHALR 164 LG +KA + D L YA D L Sbjct: 136 LGEKPNKAIR----------DAMKGIQGGLLCHDKAVLDYALDDARLACELW 177 >gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500] Length = 1411 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 27/147 (18%) Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL---TRTY 113 G + E K++H FD + + + V+ T +RL R Sbjct: 755 QGNEILEVFRPYFESESIYKVWHNYGFDRHIFYNH-NIDVKGFGGDTLHMARLWDAARNG 813 Query: 114 TNQHGLKDNLKELL-----------GINISKAQQSS--DWSADDLS---------DEQLQ 151 + L+ KELL G N KA D L + ++ Sbjct: 814 RGGYSLEGLSKELLDNHKTSIKDLFGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETWIE 873 Query: 152 YAASDVVHLHALRLQFTEKLQRLGRSD 178 Y++ D LR KLQ + + Sbjct: 874 YSSLDAELTWNLRENLQAKLQNMVWMN 900 >gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] Length = 1025 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%) Query: 43 QLSPGDGTVD----IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 Q GDG +I + L +L K+ +F AVL G+ +R Sbjct: 473 QSGDGDGLFAAGLAPDQIGP-RDALDALKPILESAGVAKVGFAIKF-AAVLLAQHGLTLR 530 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + ++ S H L + LG + Sbjct: 531 NIDDPQLMSYALDAGRGSHALDALSESNLGHTL 563 >gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4] Length = 547 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 46/146 (31%), Gaps = 33/146 (22%) Query: 14 ECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGD------GTVDIIRIAAGQKN-- 62 E V + VD ET G P D + V++ G+ V I + G + Sbjct: 30 EPLLSEVTFVVVDLETTGTRPGGDEITEIGAVRIRGGEVQAELSTFVSIDGVLPGHISRL 89 Query: 63 ----------APNLVGMLV-----DEKREKIFHYGRFDIAVLFYTFGVRVR-----PVFC 102 AP+L ++ + H RFD+ L P C Sbjct: 90 TGIAPEDLVGAPSLGEVMATFLEFSRGAVLVAHNARFDLGFLRAAAAATGHRWPDPPSVC 149 Query: 103 TK-IASRLT-RTYTNQHGLKDNLKEL 126 T +A R+ R T H L L Sbjct: 150 TLALARRVLHRGETRGHRLGVLAAHL 175 >gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047] gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047] Length = 1465 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 5/54 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD+ + Y +PV T +R +HGL K Sbjct: 509 VAHNASFDVGFMNANYDRYGLAKISQPVIDTLELARNLYPEYKRHGLGPLTKRF 562 >gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] Length = 908 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 41/150 (27%), Gaps = 35/150 (23%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPV 100 ++ G I + L L D K H + D+ G + V Sbjct: 364 VASGGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAKLAIHDL----QGRGWTLAGV 419 Query: 101 F-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD--- 156 T +A+ L R L D L + +D + EQ Q + D Sbjct: 420 TSDTALAAYLVRPGQRSFALDDLSLRYLKREL-----RAD------NPEQQQLSLLDDSD 468 Query: 157 --------VVHLH-----ALRLQFTEKLQR 173 + L L E+L R Sbjct: 469 GVDDQAVQTLLLRASAVVDLADALDEELAR 498 >gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing bacterium SS3/4] Length = 1376 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 25/120 (20%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYT 114 K P + + D + H FD++ + + G+ V T +R Sbjct: 481 DKVLPRFLEFVGDAAL--VAHNASFDVSFISHNAGLLGLSFDPT-VLDTVTLARALLPNL 537 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 N+ L + + LG+++ + A D + L+F E L++ Sbjct: 538 NRFKLDT-VAKALGVSLENHHR----------------AVDDAEATAGIFLKFVEMLKKQ 580 >gi|109521836|ref|YP_655732.1| gp52 [Mycobacterium phage Qyrzula] gi|91980780|gb|ABE67498.1| gp52 [Mycobacterium phage Qyrzula] Length = 600 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 15/106 (14%) Query: 22 AIAVDTETLGLMPRRDRLCI----VQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEKR 75 +A D ET GL + C+ + DGT+ ++ + + + Sbjct: 33 PVAADIETPGLDRNFEINCLTAAWI---GWDGTIESVLLDPIRWPAHRQAARDVFARACK 89 Query: 76 EKIFHYGRFDIAVLFYTFGV---RVRPVFCTKIASRLTRTYTNQHG 118 +FH FD+ L++ + +R + T + +R Y + +G Sbjct: 90 L-VFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFA--YPDSYG 132 >gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4] Length = 649 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 6/92 (6%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRPVFC 102 + D V+I+ +A+G+K N++ ++D K + F+ L F + C Sbjct: 38 AVDDEEVEIVDLASGEKIPANILKAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRC 97 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 T + + + G D + + L + K Sbjct: 98 TSVHALMLGLP----GYLDGVAKCLKLQGQKM 125 >gi|32442311|gb|AAP82226.1| DNA polymerase [Podovirus SOG] Length = 419 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGW 198 DWS + E L Y D L +++ +D + M A+ + G+ Sbjct: 56 DWST--YTPEMLDYCIQDTQVTLRLYELLQRRMET--YADYIKLEMDMAMLMAQQEASGF 111 Query: 199 E 199 Sbjct: 112 R 112 >gi|218185470|gb|EEC67897.1| hypothetical protein OsI_35576 [Oryza sativa Indica Group] Length = 186 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 12/135 (8%) Query: 41 IVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 ++QL + + ++ P L L D + + L +RV Sbjct: 45 VLQLCV-NRRCLVFQLYQASNEVPRELAEFLADAGVRFVGIGVDGGVRRLANECNLRVA- 102 Query: 100 VFCT----KIASRLTR-TYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQY 152 CT +A+ + + GLK ++G + K S W L+ EQ+ Y Sbjct: 103 --CTVDLSDVAAAVLGWPELARAGLKSLALIVMGTRMEKAKDITMSRWGEPTLTWEQINY 160 Query: 153 AASDVVHLHALRLQF 167 DV + + + Sbjct: 161 TCIDVYMSYEIGRRM 175 >gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] Length = 902 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 77 KIFHYGRFDIA---VLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 KI H D+ ++F G+ +R + F T +A+ L +G+ E LG NI Sbjct: 391 KIGH----DLKTAWIVFKKHGIELRGIAFDTMVAAYLLDPGKQNYGIDRVAAECLGENID 446 >gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group] gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group] gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group] gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group] Length = 313 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 27/118 (22%) Query: 66 LVGMLVDEKREKIFHYGR-FDIAVLFYTFGV----RVRP-VF-CTK-IASRLTRTYTN-- 115 L + D+ + H GR FD+ L Y F +F T IA +L + Sbjct: 189 LSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPIARQLIGSDGEKL 248 Query: 116 -QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L + +E I ++ + A DV+ L + + T +L+ Sbjct: 249 KSVSLDNL-REHYKIPLAGSAHR---------------AMQDVITLCYVLQKLTFELK 290 >gi|322501596|emb|CBZ36676.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 891 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%) Query: 118 GLKDNLKELLGINISKAQQ--SSDWS--ADDLSDEQLQYAASDVV 158 LK+ L G + K SDW L+ Q++YAA D Sbjct: 214 SLKNMCSALTGRELGKDMAVVMSDWGGCHGALTPLQIEYAAQDAE 258 >gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905] Length = 533 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101 + DG V++ I AG L + + FH FD VL Y PV Sbjct: 37 AINDGPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 96 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 T + + L G L E+LG+ K Sbjct: 97 DTMVQA-LAHGLPGSLG---ELCEVLGVPQDK 124 >gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5] gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5] Length = 1437 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 35/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 A + D ET GL D L V++ G+ II Sbjct: 411 AAHRLLEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATII 470 Query: 55 RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRV------R 98 + + AP++V ++ D + + H FD+ L + + Sbjct: 471 ELTGITDDMLQDAPDVVDVIRDFREWIGDDIL-VAHNASFDMGFLNVAYKKLLEVDKAKN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T R H L K+ I +++ ++ Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567 >gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii str. W23] gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. spizizenii str. W23] Length = 1437 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 35/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 A + D ET GL D L V++ G+ II Sbjct: 411 AAHRLLEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATII 470 Query: 55 RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRV------R 98 + + AP++V ++ D + + H FD+ L + + Sbjct: 471 ELTGITDDMLRDAPDVVDVIRDFREWIGDDIL-VAHNASFDMGFLNVAYKKLLEVEKAKN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T R H L K+ I +++ ++ Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567 >gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195] Length = 1437 Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 35/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 A + D ET GL D L V++ G+ II Sbjct: 411 AAHRLLEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATII 470 Query: 55 RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRV------R 98 + + AP++V ++ D + + H FD+ L + + Sbjct: 471 ELTGITDDMLQDAPDVVDVIRDFREWIGDDIL-VAHNASFDMGFLNVAYKKLLEVDKAKN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T R H L K+ I +++ ++ Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567 >gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 24/111 (21%) Query: 64 PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR------VRPVFCT-KIASRLTRTYTNQ 116 ++ E I H +FD+ + + T IA R + +++ Sbjct: 81 SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR--KHPSSR 138 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + L K GI I + +S A D L + ++ Sbjct: 139 NDLNSLCKRY-GITI--SHRS------------KHGALLDSHLLSDVYIKM 174 >gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88] gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88] Length = 1427 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 7/81 (8%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLT 110 ++ P + + D + H FD++ + FG+ P+ T + Sbjct: 474 DAPKIEEVLPKFIDFIED-SIL-VAHNANFDVSFIKKNCKDFGIHFNNPILDTIPLCKFL 531 Query: 111 RTYTNQHGLKDNLKELLGINI 131 ++ L + + + LGI + Sbjct: 532 YPELKRYKL-NVVAKHLGIPL 551 >gi|296805658|ref|XP_002843653.1| RNA exonuclease 1 [Arthroderma otae CBS 113480] gi|238844955|gb|EEQ34617.1| RNA exonuclease 1 [Arthroderma otae CBS 113480] Length = 737 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 41/166 (24%) Query: 5 RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDII----RIA 57 V + +I D A+D E T G R+ ++ DG + + Sbjct: 342 TVPDNEIAEGSVTAGRDVFALDCEMCITEGGKSELTRISLM---SWDGERVLDEFVKPVT 398 Query: 58 AGQKNAPNLVGM-----------LVD--EKREKIF--------HYGRFDIAVLFYTFGVR 96 G+ L D +K KI H D+ L Sbjct: 399 PIIDYLTRFSGVTKEKLDPVTTTLSDIQQKLLKILTPRSILLGHSLNSDLNALK-----L 453 Query: 97 VRP-VFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSD 139 P + T A+ R + LK ++ LG I K + D Sbjct: 454 THPFIVDT--AAIYPHPRGPPLKSSLKWLCQKYLGREIQKGEAGHD 497 >gi|146095489|ref|XP_001467593.1| hypothetical protein [Leishmania infantum JPCM5] gi|134071958|emb|CAM70655.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 891 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%) Query: 118 GLKDNLKELLGINISKAQQ--SSDWS--ADDLSDEQLQYAASDVV 158 LK+ L G + K SDW L+ Q++YAA D Sbjct: 214 SLKNMCSALTGRELGKDMAVVMSDWGGCHGALTPLQIEYAAQDAE 258 >gi|32442307|gb|AAP82224.1| DNA polymerase [Podovirus SOG] Length = 419 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGW 198 DWS + E L Y D L +++ +D + M A+ + G+ Sbjct: 56 DWST--YTPEMLDYCIQDTQVTLRLYELLQRRMET--YADYIKLEMDMAMLMAQQEASGF 111 Query: 199 E 199 Sbjct: 112 R 112 >gi|32442309|gb|AAP82225.1| DNA polymerase [Podovirus SOG] Length = 419 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGW 198 DWS + E L Y D L +++ +D + M A+ + G+ Sbjct: 56 DWST--YTPEMLDYCIQDTQVTLRLYELLQRRMET--YADYIKLEMDMAMLMAQQEASGF 111 Query: 199 E 199 Sbjct: 112 R 112 >gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168] gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168] gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH642] gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis] gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 1437 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 35/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 A + D ET GL D L V++ G+ II Sbjct: 411 AAHRLLEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATII 470 Query: 55 RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRV------R 98 + + AP++V ++ D + + H FD+ L + + Sbjct: 471 ELTGITDDMLQDAPDVVDVIRDFREWIGDDIL-VAHNASFDMGFLNVAYKKLLEVEKAKN 529 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T R H L K+ I +++ ++ Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567 >gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus parainfluenzae ATCC 33392] gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus parainfluenzae ATCC 33392] Length = 253 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 61/201 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D VD I Sbjct: 8 IVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPDRLVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR--------VRPVFC 102 + P+ + D E + H FD+ + Y F + V Sbjct: 68 TDEMLADKPDFKTIAQDFIEYIRGAELLIHNAPFDVGFMDYEFRKLGLDIKTTDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNSLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFTEKLQRLGRSDLATSC 183 + L T G++ L Sbjct: 172 VYLSMTG-----GQTSLFDEE 187 >gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Bacillus coahuilensis m4-4] Length = 194 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 38/144 (26%) Query: 18 RYVDAIAVDTETLGLMPRR-DRLCIVQLSP---GDGTVD-----------IIRIAAGQ-- 60 + + VD ET G P+R DR+ +QLS G + I I + Sbjct: 2 KTHRYVVVDLETTGNSPKRGDRI--IQLSACLIEHGEIVEQFTSFLNPNKTIPIFIEELT 59 Query: 61 -------KNAPNLVGM------LVDEKREKIFHYGRFDIAVLF---YTFGVRV--RPVFC 102 +APN + ++++ + H FD++ L + G + P+ Sbjct: 60 GITQPMVDDAPNFEQIAPKLISMLNDSVF-VAHNVTFDLSFLQWELHAAGYKTFQGPILD 118 Query: 103 TKIASRLTRTYTNQHGLKDNLKEL 126 T +++ +N + L D ++ Sbjct: 119 TVELAKICFPTSNSYKLGDLSEKF 142 >gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae subsp. larvae BRL-230010] Length = 203 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 19/102 (18%) Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H+ FD+A L CT+ S+L + L + E GI ++ Sbjct: 85 GTIVVAHHAPFDLAFLARY-QFEPDSFVCTRALSKLVES-DESASLAS-VAERRGIELTG 141 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + A +DV + Q + LG Sbjct: 142 HHR----------------AMNDVEATVKVFQQMKAEADALG 167 >gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21] gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21] Length = 256 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 51/186 (27%), Gaps = 56/186 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D VD I Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFT 168 + L T Sbjct: 172 VYLMMT 177 >gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parauberis NCFD 2020] gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus parauberis NCFD 2020] Length = 1465 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD---GTVD------IIR------- 55 P + + D ET GL + ++Q++ G + I Sbjct: 417 PVDLDLHESTYVVFDVETTGLSAMNND--LIQIAASKMYKGNILEQFDEFIDPGHPLSAF 474 Query: 56 ---IAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + N A L +LV+ + + H FD+ + + Sbjct: 475 TTELTGITDNHLVGAKPLHQVLVEFQAFCKDTVLVAHNASFDVGFMNANYARENLPKITQ 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K + + Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVALD 567 >gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group] Length = 901 Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 27/118 (22%) Query: 66 LVGMLVDEKREKIFHYGR-FDIAVLFYTFGV----RVRP-VF-CTK-IASRLTRTYTN-- 115 L + D+ + H GR FD+ L Y F +F T IA +L + Sbjct: 777 LSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPIARQLIGSDGEKL 836 Query: 116 -QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 L + +E I ++ + A DV+ L + + T +L+ Sbjct: 837 KSVSLDNL-REHYKIPLAGSAHR---------------AMQDVITLCYVLQKLTFELK 878 >gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 181 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 39/153 (25%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR-FDIAVLFYTFGVRV--RPVF 101 S G V + + + +L L D + ++H G FD +L + + V Sbjct: 36 SYNHGPVKVWDVTQDKTMPTDLKAYLDDPEILTVWHNGGMFDTVILSKVLNIDLPLSRVH 95 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKA----------------------QQSSD 139 T + + L G +L ++ +N KA Q+++ Sbjct: 96 DTLVQA-LAHGLPGALG---SLCDIFNVNSDKAKDKEGKALIQLFCKPRPKNSKIQRAT- 150 Query: 140 WSADDLS--DEQLQ---YAASDVVHLHALRLQF 167 L+ +E L+ YA SD++ + + Sbjct: 151 ----ALTHFEEWLRFKTYAGSDILAMREIYQHL 179 >gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] Length = 687 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 42/186 (22%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101 + DG V++ I AG L + + FH FD VL Y PV Sbjct: 36 AINDGPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK---------------------AQQSSDW 140 T + + L G L E+LG+ K + + Sbjct: 96 DTMVQA-LAHGLPGALG---ELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA-- 149 Query: 141 SADDLSDEQ---LQYAASDVVHLHALRLQFTE------KLQRLGRSDLATS---CCNFLM 188 ++ +E + YA D+ + + + + +L R C + + Sbjct: 150 TSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVEL 209 Query: 189 DRAELD 194 RA +D Sbjct: 210 ARAAID 215 >gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium KLH11] gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium KLH11] Length = 240 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 24/97 (24%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPV------FCTK-IASRLTRTYTNQHGLKDNLKELLGIN 130 + H FD+ L G P+ T IA + R + L + Sbjct: 100 VIHNASFDMKFLNAELGWMGVPLIPMAQAIDTLAIARK--RFPGSPASLDALCRRF---G 154 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 I + + L A D L + L+ Sbjct: 155 IDNSNRV------------LHGALLDSEILAEVYLEL 179 >gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum 5521] gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1450 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 7/89 (7%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRVR-PVFCTKIASRLT 110 + P + D + H FD + G+ + T +R Sbjct: 498 DAETIEILLPKFMEFCADS--VLVAHNAAFDTGFIKKNCRDLGIDFNYSIMDTVPLARFL 555 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 + L + + + LGI++ ++ D Sbjct: 556 CPDLKKVKL-NLVAKHLGISLDNHHRAVD 583 >gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi BJ001] Length = 297 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 38/140 (27%) Query: 21 DAIAVDTETLGLMPRRDRLC------------------IV---QL--SPGDGTVDIIRIA 57 +A+D ET RD C ++ Q+ SPG+ + I + Sbjct: 2 SVVAIDFETANER--RDSACAVGLAWIEGGRVVRRETRLIRPPQMRFSPGNIRIHGI-LP 58 Query: 58 AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT-KIA 106 A ++AP + + + H FD+ VL + PV CT +IA Sbjct: 59 ADVRDAPTFPEVFAEFRPDLTGALLLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIA 118 Query: 107 SRLTRTYTNQHGLKDNLKEL 126 R+ HGL L Sbjct: 119 RRIFPD-PAGHGLAKVAGRL 137 >gi|327305563|ref|XP_003237473.1| exonuclease [Trichophyton rubrum CBS 118892] gi|326460471|gb|EGD85924.1| exonuclease [Trichophyton rubrum CBS 118892] Length = 734 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 47/163 (28%), Gaps = 37/163 (22%) Query: 6 VHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQ----------LSPGDGTVD 52 V + DI D A+D E T G R+ +V + P + +D Sbjct: 340 VPDRDIAEGSVTAGRDIFALDCEMCITEGGKSELTRISLVSWDGERVLDEFVKPENPIID 399 Query: 53 ------------IIRIAAGQKN-APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 + + + L+ +L I H D+ L P Sbjct: 400 YLTRFSGVTKEKLDPVTTNLSDIQQKLLEILTPRSIL-IGHSLNSDLNALK-----LTHP 453 Query: 100 -VFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSD 139 + T AS R + LK + LG I K D Sbjct: 454 FIIDT--ASIYPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHD 494 >gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512] Length = 241 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 54/178 (30%) Query: 26 DTETLGLMPRRDRL----------------CI-VQLSPGDGTVDIIRIAA-GQKN----- 62 DTET GL R DR+ + + ++PGD V +A G + Sbjct: 7 DTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLKD 66 Query: 63 -------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRL 109 A ++ D K I H FD+ + F + V T +R Sbjct: 67 KKAFAEVAEEILAFFGDAK--WIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARR 124 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L + + + ++ A D L + ++ Sbjct: 125 KHPMGPN-SLDALCRRY---GVDNSHRA------------KHGALLDSELLAEVYIEM 166 >gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 1410 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 9/88 (10%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRT 112 + ++ P + + D + H FD+ + G+ V PV T SR Sbjct: 462 PSIEEILPKFLDFIKD-SIL-VAHNANFDVTFIKTKARNLGMEVDNPVLDTLELSR--HM 517 Query: 113 YTNQHGLK-DNLKELLGINISKAQQSSD 139 Y N K D + + LG+++ ++ D Sbjct: 518 YENLKNYKLDTVAQHLGVSLENHHRAVD 545 >gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652] gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652] Length = 241 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 54/178 (30%) Query: 26 DTETLGLMPRRDRL----------------CI-VQLSPGDGTVDIIRIAA-GQKN----- 62 DTET GL R DR+ + + ++PGD V +A G + Sbjct: 7 DTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLKD 66 Query: 63 -------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRL 109 A ++ D K I H FD+ + F + V T +R Sbjct: 67 KKAFAEVAEEILAFFGDAK--WIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARR 124 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L + + + ++ A D L + ++ Sbjct: 125 KHPMGPN-SLDALCRRY---GVDNSHRA------------KHGALLDSELLAEVYIEM 166 >gi|316995410|gb|ADU79191.1| DNA polymerase [Enterobacter phage EcP1] Length = 865 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 23/131 (17%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPN----LVGMLVDEK 74 A++ D E L RL + + +G + ++A L G + K Sbjct: 188 PALSADIEAWSLKFYEARLGTISFAWNQHEGIAFAVDFERNYEDALAIRLLLKGFFTEYK 247 Query: 75 REKIFHYGRFDIAV---------------LFYTFGVRVRPVFCTKIASRLTRTY--TNQH 117 + ++H G +D+ V L V + TKI + L N Sbjct: 248 GKMLWHNGSYDLTVIIYELWMNGLLDQKGLLTGLDVMTKNWHDTKIITYLATNSCAGNHL 307 Query: 118 GLKDNLKELLG 128 GLK E G Sbjct: 308 GLKAQSHEYAG 318 >gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Ba4 str. 657] gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Ba4 str. 657] Length = 1432 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 7/85 (8%) Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASRLTRTYT 114 K P + + D + H FD++ + + V T SR Sbjct: 483 IDKILPRFIDFIGDS--VVVAHNADFDVSFINKNCKDLKIEFENSVMDTVTLSRFLFPEL 540 Query: 115 NQHGLKDNLKELLGINISKAQQSSD 139 ++ L + + + LGI++ ++ D Sbjct: 541 KRYKL-NVIAKHLGISLENHHRAVD 564 >gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis audaxviator MP104C] gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis audaxviator MP104C] Length = 921 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 30/133 (22%) Query: 22 AIAVDTETLGLMPRRDRL---CIVQLSPGDGTVD---IIRIAA----------GQKNA-- 63 + +D ET GL P+ D + +V++ G ++R + G +A Sbjct: 5 FVVLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLDDADL 64 Query: 64 ----------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113 P + L +E + H+ FD+A L G R + T +RL Sbjct: 65 AERPDWSEVRPAVTAFLGNEPV--VGHHVHFDLAFLERHAGYRATQAYDTVDLARLVLPG 122 Query: 114 TNQHGLKDNLKEL 126 + L+ L Sbjct: 123 LPSYRLELLCAHL 135 >gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Bf] gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum Bf] Length = 1432 Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 7/85 (8%) Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASRLTRTYT 114 K P + + D + H FD++ + + V T SR Sbjct: 483 IDKILPRFIDFIGDS--VVVAHNADFDVSFINKNCKDLKIEFENSVMDTVTLSRFLFPEL 540 Query: 115 NQHGLKDNLKELLGINISKAQQSSD 139 ++ L + + + LGI++ ++ D Sbjct: 541 KRYKL-NVIAKHLGISLENHHRAVD 564 >gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599] gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599] Length = 967 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 74/224 (33%), Gaps = 71/224 (31%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR----------IAAGQK----------- 61 + VD ET G PR+ I+Q+ G V I I GQ Sbjct: 5 LVVDFETTGSHPRQGD-SIIQI----GAVAIDDGQITESFSTLIHPGQDIPPFITQLTGI 59 Query: 62 ------NAPNLVGMLVD-----EKREKIFHYGRFDIAVL--------FYTFGVRVRPVFC 102 +AP+L + D + R + H FD+ L +Y F V Sbjct: 60 TNEMVADAPSLEEVFPDFLRLLDGRAFVAHNASFDLQFLQEALLSQGYYAFDGY---VLD 116 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS-SDWSADDLSDEQLQYAASDVVHLH 161 T SR+ N + L + E L I Q+ SD L+ QL +HL Sbjct: 117 TVELSRVLLPMQNSYRLGELASE-LEIEHDNPHQADSD----ALATAQLF------LHLL 165 Query: 162 ALRLQF-------TEKLQRLGRSDLA----TSCCNFLMDRAELD 194 + + + L RSD+ L++ ELD Sbjct: 166 DILKKLPLVTIQRLQMLVSSFRSDIEVLLRQIEMEKLIELPELD 209 >gi|154271314|ref|XP_001536510.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150409180|gb|EDN04630.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 805 Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 46/158 (29%), Gaps = 39/158 (24%) Query: 8 EGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---- 60 E DI + +++D E T G + R+ +V DG V + + Sbjct: 420 ENDIQLGSITAGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDDLVKPDKPII 476 Query: 61 ----------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 L+ +L I H D++ L Sbjct: 477 DYLTRFSGITKEMLEPVTTRLPDVQQKLLTLLTPRTIL-IGHSLNSDLSALK-----LTH 530 Query: 99 P-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 P + T I R + LK ++ LG I K Q Sbjct: 531 PFIVDTSIIYPHPRGPPLKSSLKWLSQKYLGKEIQKGQ 568 >gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] Length = 880 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 16/139 (11%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121 A L +L E EK+F + L G+ V+ + F +A L + L D Sbjct: 366 ADALKEILESETIEKLFINAKESSLALLCA-GIEVKNISFEPLLAYYLLQ---PSSSLPD 421 Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181 +E+ + Q + S +Q+ A + + L LR +KL+ DL Sbjct: 422 L-EEIFSRELDIGMQ-------EFSQDQIL--AVETIKLFKLRDILIKKLKDDSLYDLFK 471 Query: 182 S-CCNFLMDRAELDLLGWE 199 + + A+++ G + Sbjct: 472 NMELPLIKVLAQMEYNGVK 490 >gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025] gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025] Length = 1470 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 5/59 (8%) Query: 73 EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + H FD+ + + +PV T +R +HGL K Sbjct: 507 QDTVLVAHNATFDVGFMNANYERHDLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565 >gi|240273466|gb|EER36986.1| RNA exonuclease [Ajellomyces capsulatus H143] Length = 598 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 47/161 (29%), Gaps = 39/161 (24%) Query: 5 RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60 V + DI + +++D E T G + R+ +V DG V + + Sbjct: 192 TVLKNDIQLGSITAGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDDLVKPDK 248 Query: 61 -------------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95 L+ +L I H D++ L Sbjct: 249 PIIDYLTRFSGITKEMLEPVTTRLPDVQQKLLTLLTPRTIL-IGHSLNSDLSALK----- 302 Query: 96 RVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 P + T I R + LK ++ LG I K Q Sbjct: 303 LTHPFIVDTSIIYPHPRGPPLKSSLKWLSQKYLGKEIQKGQ 343 >gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus porcinus str. Jelinkova 176] gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus porcinus str. Jelinkova 176] Length = 1466 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 6/60 (10%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + + + +PV T +R +HGL K +++ Sbjct: 510 VAHNASFDVGFMNANYERHHLPLIKQPVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 568 >gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] Length = 894 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 7/132 (5%) Query: 3 TIRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60 T+ ++ + A A A+AVD + D + + D V + A Sbjct: 312 TVPTTADELASFLAGGAGQRSALAVDL--VPGRIGEDAAGL-AILRADAAVYLDLTALDA 368 Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119 L L D + K+ H + + L G+ + V T I+ L + + L Sbjct: 369 DTENALATWLRDPESPKVLHGFKAALKALTAR-GLELEGVVDDTSISGYLIQPDRRTYEL 427 Query: 120 KDNLKELLGINI 131 + + L + + Sbjct: 428 AELAQHHLNVGM 439 >gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1] gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum Rt17-B1] Length = 1390 Score = 36.5 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 30/135 (22%) Query: 22 AIAVDTETLGLMPRRDRLCIV-QLSPGDGTVD-----IIRIAAGQKNAPNLVGMLVD--- 72 + +D ET GL PR D + + + DG V +R K + N+ G+ D Sbjct: 383 YVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDEFHTFVRPNKLNKKSLNITGITEDMLK 442 Query: 73 --EKREKIF--------------HYGRFDIAVLFYTF---GVRVR-PVFCTK-IASRLTR 111 ++ H FD+ L G+ P T ++ L R Sbjct: 443 DAPDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNPPYIDTLRLSQALLR 502 Query: 112 TYTNQHGLKDNLKEL 126 L + Sbjct: 503 NKIKSFSLDKLVDHF 517 >gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25] gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit [Campylobacter jejuni subsp. jejuni S3] gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 326 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 6/67 (8%) Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-----CTKIASRLTRTYTNQHGL 119 L + H FDI L+ F + F T S+L H L Sbjct: 104 EFDDFLKSGDIL-VAHNAHFDINFLYDNFMCYLNKPFSFDFVDTMRLSKLINQELAHHRL 162 Query: 120 KDNLKEL 126 KD + Sbjct: 163 KDLCNQY 169 >gi|302852450|ref|XP_002957745.1| hypothetical protein VOLCADRAFT_98869 [Volvox carteri f. nagariensis] gi|300256921|gb|EFJ41177.1| hypothetical protein VOLCADRAFT_98869 [Volvox carteri f. nagariensis] Length = 909 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 5/36 (13%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI 53 I DTE +G D+L +VQL GD + + Sbjct: 161 EPPKVIGFDTEFIG-----DQLALVQLCCGDRALLV 191 >gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159] gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159] Length = 1465 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 5/59 (8%) Query: 73 EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + H FD+ + + +PV T +R +HGL K Sbjct: 502 QDTVLVAHNATFDVGFMNANYERHDLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560 >gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1] gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1] Length = 774 Score = 36.5 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 8/82 (9%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111 I + + + K++H FD V++ G+ V+ + T +RL Sbjct: 73 IDNLDDAAGILQEFKAWFENPRFLKVWHNYGFDRHVMWNE-GIDVQGLGGDTMHMARLQD 131 Query: 112 T------YTNQHGLKDNLKELL 127 T + L+ +LL Sbjct: 132 TCRSKMAKGGGYSLEALTADLL 153 >gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2] Length = 1441 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L G PV T +R H L K+ + ++ Sbjct: 508 VAHNASFDMGFLNVGYKKMGIGKASNPVIDTLELARFLYPDMKNHRLNTLAKKF-DVELT 566 Query: 133 KAQQS 137 + ++ Sbjct: 567 QHHRA 571 >gi|168028955|ref|XP_001766992.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681734|gb|EDQ68158.1| predicted protein [Physcomitrella patens subsp. patens] Length = 325 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%) Query: 18 RYVDAIAVDTETLGLMPRR-----DRLCIVQLSPGDGTVDI---IRIAAGQKN------- 62 R A+A+D E +G R+C+V D V + ++ + Sbjct: 116 RQYGAVALDCEMVGGGSDGSINICARVCLV---DEDENVLLNTYVQPLLPVTDYRYEITG 172 Query: 63 --------APNL-------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 AP+ +L D I H R D+A L + T Sbjct: 173 IKPSDFNGAPSFKRVRYIVKRILED-GPLLIGHDLRHDLACLR--LDHSPELIRDTATYQ 229 Query: 108 RLTRTYTNQHGLKDNLKELLGINI 131 +T H L+ + LG I Sbjct: 230 LFVKTSGVSHKLRFLTEVFLGYKI 253 >gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 895 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 4/89 (4%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FC 102 L+ TV + G + L L R+ FH L G V + F Sbjct: 364 LASATETVY-VPWEDGSHHGAALTEWLASPARKCFFHAKPQ-FKTLLRA-GFAVDGLAFD 420 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINI 131 T+IAS L + + L + + E+LG + Sbjct: 421 TRIASWLVKPGSAPQSLAEQVWEVLGETL 449 >gi|226288322|gb|EEH43834.1| RNA exonuclease [Paracoccidioides brasiliensis Pb18] Length = 734 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 51/167 (30%), Gaps = 37/167 (22%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDII---- 54 + + + E DI + +++D E T G R+ +V DG V + Sbjct: 326 SDVEIPEKDIQKGSITAGREILSLDCEMCITEGGSSELTRVSLV---SWDGEVVLDELVK 382 Query: 55 ---RIAAGQKNAPNLVGMLVDE------------------KREKIFHYGRFDIAVLFYTF 93 I + ++D K I H D++ L Sbjct: 383 PEKPIIDYLTRFSGITQEMLDPVTTRLANVQQKLLLLLTPKTILIGHSLNSDLSALK--- 439 Query: 94 GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 P + T I R + LK ++ LG+ I K Q D Sbjct: 440 --LTHPFIIDTSIIYPHPRGTPLKLSLKWLSQKYLGMEIQKGQTGHD 484 >gi|225683202|gb|EEH21486.1| RNA exonuclease [Paracoccidioides brasiliensis Pb03] Length = 734 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 51/167 (30%), Gaps = 37/167 (22%) Query: 2 TTIRVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDII---- 54 + + + E DI + +++D E T G R+ +V DG V + Sbjct: 326 SDVEIPEKDIQKGSITAGREILSLDCEMCITEGGSSELTRVSLV---SWDGEVVLDELVK 382 Query: 55 ---RIAAGQKNAPNLVGMLVDE------------------KREKIFHYGRFDIAVLFYTF 93 I + ++D K I H D++ L Sbjct: 383 PEKPIIDYLTRFSGITQEMLDPVTTRLANVQQKLLLLLTPKTILIGHSLNSDLSALK--- 439 Query: 94 GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 P + T I R + LK ++ LG+ I K Q D Sbjct: 440 --LTHPFIIDTSIIYPHPRGTPLKLSLKWLSQKYLGMEIQKGQTGHD 484 >gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 729 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 7/68 (10%) Query: 78 IFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H FD+ + GVR PV T + S +T H L+ LG+ ++ Sbjct: 621 VAHNAAFDMKFIRLKERRCGVRFDNPVLDTLLLSVFLHDHTADHTLEAIAAR-LGVEVTA 679 Query: 134 AQQSSDWS 141 + W Sbjct: 680 QHTA--WG 685 >gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1] gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1] Length = 908 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 8/92 (8%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPV 100 ++ G I + L L D K H + D+ G + V Sbjct: 364 VASGGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAKLAIHDL----QGRGWTLAGV 419 Query: 101 F-CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +A+ L R L D L + Sbjct: 420 TSDTALAAYLVRPGQRSFALDDLSLRYLKREL 451 >gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 735 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 41/135 (30%), Gaps = 23/135 (17%) Query: 54 IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVLF----YTFGVRVRPVFCTKIAS 107 + GQ N ++ L D + H FD+ L T +PV T + S Sbjct: 604 DDMVRGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQPVLDTLLLS 663 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + H L + LGI I A D + L+ Sbjct: 664 GVLHPNQESHQLDSIAER-LGIGIEDRHN----------------ALGDACATAEVFLKM 706 Query: 168 TEKLQRLGRSDLATS 182 L ++G + L + Sbjct: 707 LPLLAQMGITTLRQA 721 >gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72] gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72] Length = 918 Score = 36.5 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 13/125 (10%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66 +A DTET L P RL + + G + +A + P L Sbjct: 337 LEATPLVAFDTETTSLDPMSARLVGMSFALAQGEAAYLPLAHRGTDVPQQLPLDEVLARL 396 Query: 67 VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125 L ++ K+ ++D VL G+R+ + T + S + + H + K Sbjct: 397 KPWLESDRHAKLGQNLKYDAHVLLNH-GIRLGGITHDTLLESYVLES-DKPHDMDSLAKR 454 Query: 126 LLGIN 130 LG+ Sbjct: 455 HLGLT 459 >gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2] gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2] Length = 202 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 38/145 (26%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS------------------------------PGDGT 50 + + +D ET GL P D++ +Q+ G Sbjct: 41 NYVVLDFETTGLRPGNDKI--IQIGAVKYVNHEREETMYLMVNPQRSISNTITRITGITN 98 Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP---VFCTKIAS 107 D+ + A +L+ + D I H FD+ L+ + P V T + Sbjct: 99 KDVENAPVIEDIAHDLITFIGDLPI--IAHNAPFDMGFLYALEDITPIPEYTVIDTVKLA 156 Query: 108 RLTRTYTNQHGLKDNLKELLGINIS 132 R T T H L L + Sbjct: 157 RKAITQTPNHKLTTLTA-FLKLEHD 180 >gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J] gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J] Length = 1465 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 5/58 (8%) Query: 74 KREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FDI + +PV T +R +HGL K Sbjct: 505 DTVLVAHNASFDIGFMNANYERNGLPQITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 562 >gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 729 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 23/123 (18%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRT 112 P D + H FD+ L GVR +PV T + S + Sbjct: 605 PTIDTVLPQFQTFCADT--VLVGHNAAFDMRFLQLKEKQTGVRFDQPVLDTLLLSAVLHP 662 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 N H L+ + LG+++ A D + + L+ L Sbjct: 663 NQNSHRLEAIAER-LGVSVFGRHT----------------ALGDAMVTGEVFLKMLPLLA 705 Query: 173 RLG 175 +G Sbjct: 706 EMG 708 >gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] Length = 872 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 29 TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-PNLVGMLVDEKREKIFHYGRFDIA 87 + ++ + ++ + I L D + K+ + ++ Sbjct: 328 FASTKLYQQKVEGLTVASDEEACYIDTSDLDLAELIDKLQPYFEDYELNKLSLNTKENLI 387 Query: 88 VLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLS 146 L GV V+ + F +A L R + L+ L + L + + K + ++ + Sbjct: 388 YLKEQ-GVEVKGISFDPLLADYLLRPSAKEQDLESILTDQLQMELEKTESEAE------T 440 Query: 147 DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 + Q V L L+ + T+KL G +L + A+++L G Sbjct: 441 EVQQ------VRILFKLQDKLTDKLADKGLMELFIDVELPLIPILAQMELNG 486 >gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315] Length = 375 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 26/146 (17%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR 98 +Q G + AP L L + + + H FD L F G+ Sbjct: 62 IQQLTGISDAMVRDAPTFASLAPALFERL--DGKLFVAHNASFDRGFLRAEFERAGLTFN 119 Query: 99 P-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 P V CT SR ++HGL ++ G+ + + A +D Sbjct: 120 PDVLCTVRLSRALFPRESRHGLDALIERH-GLVPAARHR----------------ALADA 162 Query: 158 VHLHALRLQFTEK--LQRLGRSDLAT 181 L Q E L+RL R +A Sbjct: 163 DLLWQFWRQLHEIVPLERL-RDQIAR 187 >gi|349620|gb|AAA17435.1| DNA polymerase III epsilon subunit [Buchnera aphidicola] Length = 179 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 17/80 (21%) Query: 62 NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR---------PVFCT-KIA 106 + P+ + D + E I H FD+ + F + + + T KIA Sbjct: 74 DKPSFKDIAKDFFNYIKNSELIIHNASFDVGFINQEFSMLTKKIQDISNFCNIIDTLKIA 133 Query: 107 SRLTRTYTNQHGLKDNLKEL 126 +L ++ L Sbjct: 134 RKL--FPGKKNTLDALCMRY 151 >gi|21672521|ref|NP_660588.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|21623143|gb|AAM67799.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 234 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 17/80 (21%) Query: 62 NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR---------PVFCT-KIA 106 + P+ + D + E I H FD+ + F + + + T KIA Sbjct: 75 DKPSFKDIAKDFFNYIKNSELIIHNASFDVGFINQEFSMLTKKIQDISNFCNIIDTLKIA 134 Query: 107 SRLTRTYTNQHGLKDNLKEL 126 +L ++ L Sbjct: 135 RKL--FPGKKNTLDALCMRY 152 >gi|2833216|sp|Q08880|DPO3E_BUCAP RecName: Full=DNA polymerase III subunit epsilon gi|1794288|gb|AAC44791.1| DNA polymerase III epsilon chain [Buchnera aphidicola] Length = 233 Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 17/80 (21%) Query: 62 NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR---------PVFCT-KIA 106 + P+ + D + E I H FD+ + F + + + T KIA Sbjct: 74 DKPSFKDIAKDFFNYIKNSELIIHNASFDVGFINQEFSMLTKKIQDISNFCNIIDTLKIA 133 Query: 107 SRLTRTYTNQHGLKDNLKEL 126 +L ++ L Sbjct: 134 RKL--FPGKKNTLDALCMRY 151 >gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] Length = 884 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 6/102 (5%) Query: 28 ETLGLMPRR-DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG-RFD 85 ET G P D + ++ + G + + A + L D +R+K H R D Sbjct: 327 ETHGDNPHHADIVGLIFAATGQQFFMTLDVLQ-SDAATPIRAWLADPERKKRGHDLHRTD 385 Query: 86 IAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126 +A + G+ F ++A L L + Sbjct: 386 LA--LHWHGIEFAGAEFDVQLAGYLLDPTDANQTLSGLAAKY 425 >gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771] Length = 238 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 54/178 (30%) Query: 26 DTETLGLMPRRDRL----------------CI-VQLSPGDGTVDIIRIAA-GQKN----- 62 DTET GL R DR+ + + ++PGD V +A G + Sbjct: 7 DTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLKD 66 Query: 63 -------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRL 109 A ++ D K I H FD+ + F + V T +R Sbjct: 67 KKAFAEVAEEILAFFGDAK--WIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARR 124 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L + + + ++ A D L + ++ Sbjct: 125 KNPMGPN-SLDALCRRY---GVDNSHRA------------KHGALLDSELLAEVYIEM 166 >gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M] Length = 423 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 6/98 (6%) Query: 33 MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89 P++ +Q G + AP L L + + H FD L Sbjct: 92 DPQQPIPSFIQQLTGITNAMVRGAPTFDAIAPELFARL--NGKLFVAHNASFDRGFLRGE 149 Query: 90 FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 F G+ P V CT SR +HGL ++ Sbjct: 150 FRRAGISFDPDVLCTVRLSRALFPSEKRHGLDALVERH 187 >gi|303278438|ref|XP_003058512.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459672|gb|EEH56967.1| predicted protein [Micromonas pusilla CCMP1545] Length = 605 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 9/72 (12%) Query: 65 NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--HGLKDN 122 LV ++ E + H D+ L + PV T A + GL D Sbjct: 235 ELVSIVTAETIL-VGHGLVHDLRALKFHH----APVIDT--AMLFEYENLPRSTPGLADL 287 Query: 123 LKELLGINISKA 134 K LLG+ + K Sbjct: 288 CKRLLGVEMRKG 299 >gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B] gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium botulinum B str. Eklund 17B] Length = 1452 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 7/81 (8%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRVR-PVFCTKIASRLTRTYTNQHG 118 P + D + H FD + +R P+ T R + Sbjct: 508 LPKFMEFCEDTVI--VAHNAAFDTGFIKKNCRDLNIRFDIPILDTVTLCRFLYPELKKVK 565 Query: 119 LKDNLKELLGINISKAQQSSD 139 L + + + LGI++ ++ D Sbjct: 566 L-NIVAKFLGISLENHHRAVD 585 >gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E980] gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E980] Length = 1450 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53 A A + D ET GL D L V++ G D +D Sbjct: 415 DAHEALNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474 Query: 54 ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100 + G K+ ++ M + + + H FD+ L + +G+ PV Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T +R + GL K+ G+++ + ++ Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570 >gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] Length = 666 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 10/91 (10%) Query: 25 VDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKRE 76 VD T GL + + ++ + DG V++I + G Q+ + +L + Sbjct: 16 VDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVGVRRLLESQNYI 75 Query: 77 KIFHYGRFDIAVLFYTFGVRVRP--VFCTKI 105 K H F++ L + +RP CT + Sbjct: 76 KCAHNAHFEMECLKRALHIIIRPSRWECTMV 106 >gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2] gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2] Length = 907 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 21/186 (11%) Query: 5 RVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62 ++ G+ AR D + +DTET GL RL + + + +A Sbjct: 312 KILTGEQLDAWLARLLAADLVCLDTETTGLDVMDARLVGMSFAITPHEAAYLPLAHRYPG 371 Query: 63 APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111 P+ L L E+ +K+ ++D + G+ +R + T + S + Sbjct: 372 VPDQLDLDATLARLRPWLESEQHKKLGQNLKYDKHIFANH-GIALRGISDDTLLESYVLE 430 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165 ++ H + LG+ ++ + A + +Q+ YAA D L Sbjct: 431 SH-KSHDMDSLALRHLGVKTISYEEVAGRGAKQICFDQVDLDIATRYAAEDADITLQLHQ 489 Query: 166 QFTEKL 171 ++ Sbjct: 490 SLAPEI 495 >gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] Length = 909 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 43/149 (28%), Gaps = 36/149 (24%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101 S GDG I ++ L L D K H + D+ G + V Sbjct: 367 SDGDGR-YIDTTRLDPEDEKALASWLADPDAPKALHEAKLAMHDL----QGRGWTLAGVT 421 Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD---- 156 T +A+ L R L D L + +D + EQ Q + D Sbjct: 422 SDTALAAYLVRPGQRSFALDDLSLRYLKREL-----RAD------NPEQQQLSLLDDSDA 470 Query: 157 -------VVHLH-----ALRLQFTEKLQR 173 + L L E+L R Sbjct: 471 VDDQAVQTLLLRAGAVVDLADALDEELAR 499 >gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002] Length = 382 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 29/141 (20%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASRLTRTYTNQHG 118 AP L L + + H FD L F G+ P V CT SR +HG Sbjct: 83 APALFERL--NGKLFVAHNASFDRGFLRSEFRRAGIAFDPDVLCTVRLSRALFPGEKRHG 140 Query: 119 LKDNLKELLGINISKAQQSSD-------WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 L ++ + + + +D W L L ++ Sbjct: 141 LDALVERHALVPSDRHRALADADLIWQFWQRLP--------------TLVPL-DALRAQI 185 Query: 172 QR-LGRSDLATSCCNFLMDRA 191 +R R LA L+D A Sbjct: 186 ERTTRRYRLAGDITEDLLDTA 206 >gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15] Length = 1450 Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53 A A + D ET GL D L V++ G D +D Sbjct: 415 DAHEALNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474 Query: 54 ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100 + G K+ ++ M + + + H FD+ L + +G+ PV Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T +R + GL K+ G+++ + ++ Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570 >gi|322494033|emb|CBZ29329.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 890 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%) Query: 118 GLKDNLKELLGINISKAQQ--SSDWS--ADDLSDEQLQYAASD 156 LK+ L G + K SDW L+ Q++YAA D Sbjct: 214 SLKNMCSALTGRELGKDMAVVMSDWGGCHGALTPLQIEYAAQD 256 >gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM 14863] Length = 1475 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 7/69 (10%) Query: 76 EKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 + H +FD + L Y PV T +R + H L KE L + Sbjct: 534 IVVAHNAQFDYSFLRYHRQKYLGEEFANPVLDTLTLARAVLPHMRSHSLAALTKE-LQVP 592 Query: 131 ISKAQQSSD 139 + +D Sbjct: 593 LV-DHHRAD 600 >gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13] Length = 1437 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 8/86 (9%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTR 111 + D + H FD+ L F G PV T RL Sbjct: 485 PEVGDVLKQFSEWMQD-DIL-VAHNASFDMGFLNIGFQRIGLGKAKNPVIDTLELGRLLF 542 Query: 112 TYTNQHGLKDNLKELLGINISKAQQS 137 H L K+ I +++ ++ Sbjct: 543 PSLKNHRLNTLCKKF-DIELTQHHRA 567 >gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 1437 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 44/156 (28%), Gaps = 40/156 (25%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAGQKNAPNLVGM---- 69 + + D ET GL D+ +++L+ DG V I + L + Sbjct: 409 LADAEYVVFDVETTGLSAVYDK--VIELAAVKMKDGQV-IDQFEEMIDPGFPLSELTINL 465 Query: 70 -----------------------LVDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVF 101 D + H FD+ L + PV Sbjct: 466 THITDDMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADIDNPVI 524 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T SR+ H L K+ +++ ++ Sbjct: 525 DTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 559 >gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] Length = 882 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 16/85 (18%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--------CTKIAS 107 + + +A L L D R K+ H + G +R + T + + Sbjct: 352 VRQWKDDAEALGAFLADPGRPKVLHGAK--------GAGHALRNIGVELDGVRRDTLLQA 403 Query: 108 RLTRTYTNQHGLKDNLKELLGINIS 132 L + L D + LG I Sbjct: 404 YLLHPDQRVYDLDDLVIRYLGREIE 428 >gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183] gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183] Length = 906 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 3/90 (3%) Query: 44 LSPGDGTVDIIRIAA-GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101 ++ G + A G+ + L L D R K H + + L G+ + V Sbjct: 364 VATASGAAVYVEPAELGEADERALAEWLADPHRPKAIHDAKGPMLALAAR-GMTLAGVTS 422 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +A+ L L D + L + Sbjct: 423 DTALAAYLALPGQRTFDLGDLVLRYLHKEL 452 >gi|20089704|ref|NP_615779.1| hypothetical protein MA0820 [Methanosarcina acetivorans C2A] gi|19914634|gb|AAM04259.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 249 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%) Query: 19 YVDAIAV-DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL--VGMLVDEKR 75 + D++A D ET GL P RDR+ +V + G+ + +R +LV Sbjct: 83 FSDSVAFFDIETTGLSPARDRITVVGIYDGNESKMYVRGINLDDIVEEFSKYRLLVS--- 139 Query: 76 EKIFHYGRFDIAVLFYTF 93 F+ RFDI + F Sbjct: 140 ---FNGARFDIPFIKSEF 154 >gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705] gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705] Length = 1444 Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 44/156 (28%), Gaps = 40/156 (25%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAGQKNAPNLVGM---- 69 + + D ET GL D+ +++L+ DG V I + L + Sbjct: 416 LADAEYVVFDVETTGLSAVYDK--VIELAAVKMKDGQV-IDQFEEMIDPGFPLSELTINL 472 Query: 70 -----------------------LVDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVF 101 D + H FD+ L + PV Sbjct: 473 THITDDMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADIDNPVI 531 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T SR+ H L K+ +++ ++ Sbjct: 532 DTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566 >gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 228 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 27/117 (23%) Query: 62 NAPNLVGMLVD-----EKREKIFHYGRFDIAVL---FYTFGVRVRPV---FCTKIASRLT 110 + P ++ D + H FD+ + G + P+ T +A Sbjct: 66 DKPVFAEIVADFMDFIGDAILVIHNAEFDMRFINAELSRLGFQPLPMSRSIDT-VAMARK 124 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + Q L + I +S A D L + LQ Sbjct: 125 KFPGAQANLDALCRRF---EIDNTHRS------------FHGALLDSELLAEVYLQL 166 >gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium DO] gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68] gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1162] gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04] gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C] gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082] gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A] gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B] gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01] gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium DO] gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502] gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410] gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68] gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium E1162] gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01] gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B] gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A] gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C] gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04] gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082] Length = 1452 Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGD-----------------GTV 51 A A + D ET GL D L V++ G+ TV Sbjct: 417 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 476 Query: 52 DIIRIAAGQ-----KNAPNLVGMLV-DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100 D+ I G L L + + H FD+ L + +G+ PV Sbjct: 477 DLTGITDGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 536 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T +R + GL K+ G+++ + ++ Sbjct: 537 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 572 >gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655] gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655] Length = 256 Score = 36.1 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 56/186 (30%) Query: 23 IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G L + CI+++ D VD I Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFT 168 + L T Sbjct: 172 VYLMMT 177 >gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1] gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit family [Aromatoleum aromaticum EbN1] Length = 478 Score = 36.1 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 10/85 (11%) Query: 62 NAPNLVGMLV---DEKREKIF--HYGRFD---IAVLFYTFGVRVRP-VFCTKIASRLTRT 112 +AP + D E++F H RFD I F GV RP V CT SR Sbjct: 78 DAPTFAELAETVFDRLHERVFVAHNARFDHGFIRAAFRRLGVDFRPKVLCTVRLSRRLYP 137 Query: 113 YTNQHGLKDNLKELLGINISKAQQS 137 +H L + G+ + ++ Sbjct: 138 QERRHNLDALIARH-GLEVEAQHRA 161 >gi|158345168|ref|YP_001522875.1| hypothetical protein PPLKA1_gp34 [Enterobacteria phage LKA1] gi|114796464|emb|CAK25002.1| hypothetical protein [Pseudomonas phage LKA1] Length = 343 Score = 36.1 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 17/128 (13%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYG-RFDIAVLFYTFGV------RVRPVFCTKIASR 108 IA K L +L +E + G RFD+ + F + R V T + ++ Sbjct: 147 IADDSKLVAELYELL-NEADLVVAQNGKRFDLPKIQARFVMAGYKPPRPFRVIDTMLMAK 205 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD---W-----SADDLSDEQLQYAASDVVHL 160 +T+ L+ +L K ++ W + +E Y DV+ L Sbjct: 206 QQFGFTSNK-LEWMTDKLCTTKKRKHEKFPGMELWNQCLAGNPEAWEEMRLYNIDDVISL 264 Query: 161 HALRLQFT 168 L L Sbjct: 265 EELYLILR 272 >gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11] gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11] gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1] Length = 687 Score = 36.1 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 7/92 (7%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101 + D V++ I AG L + + FH FD VL Y PV Sbjct: 36 AINDEPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 T + + L G L E+LG+ K Sbjct: 96 DTMVQA-LAHGLPGSLG---ELCEVLGVPQDK 123 >gi|320586750|gb|EFW99413.1| RNA exonuclease 4 [Grosmannia clavigera kw1407] Length = 721 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 7/74 (9%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLK 124 LV +L + + H D+ L P V T IA +H L+ Sbjct: 413 LVDLLDAQSIL-VGHSLDSDMRALQ-----LTHPFVVDTSIAFPHPAGPPKKHALRWLSA 466 Query: 125 ELLGINISKAQQSS 138 + L I K ++ Sbjct: 467 KYLQREIQKGHGTA 480 >gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] Length = 1480 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 23/129 (17%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR----PVFCTKIASRLTRT 112 + P + D + H FD + + + T +RL Sbjct: 519 PFIEDILPKFLDFCEDYII--VAHNAGFDTGFIRENAKKINKEYNPSIIDTVAMARLLLP 576 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 N+ L + + L I++ + A +D + ++F ++L+ Sbjct: 577 ELNRFKLDT-VCKALNISLEGHHR----------------AVNDAEATAQIWVEFIKRLK 619 Query: 173 RLGRSDLAT 181 G S L+ Sbjct: 620 DKGISKLSE 628 >gi|22328601|ref|NP_680682.1| 3'-5' exonuclease-related [Arabidopsis thaliana] gi|332657941|gb|AEE83341.1| 3'-5' exonuclease-related protein [Arabidopsis thaliana] Length = 263 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%) Query: 139 DWSADDLSDEQLQYAASDV---VHLHALRLQF 167 +W LS +QLQYAA+D HLH + Sbjct: 225 NWEVHPLSKQQLQYAATDAYASWHLHQVLKDL 256 >gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae] gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae] Length = 1459 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 6/57 (10%) Query: 78 IFHYGRFDIAVLFYTF--GVRVRP---VFCTKIASRLTRTYTNQHGLKDNLKELLGI 129 I H +FD L F P V T IASR+ +H L+D + LG+ Sbjct: 509 IAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIASRIGFPNYKRHKLED-VASRLGV 564 >gi|266625917|ref|ZP_06118852.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479] gi|288862187|gb|EFC94485.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479] Length = 333 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 21/102 (20%) Query: 78 IFHYGRFDIAVLFYT---FGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H FD++ + G+ P V T +R N+ L + + L I+++ Sbjct: 3 VAHNASFDVSFINRNAEILGLPFEPTVLDTVTLARFLLPNLNRFKLDT-VAKALNISLAN 61 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + A D + ++F + L+ G Sbjct: 62 HHR----------------AVDDAGCTAEIFVKFVQMLRERG 87 >gi|307153762|ref|YP_003889146.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7822] gi|306983990|gb|ADN15871.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7822] Length = 817 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 33/167 (19%) Query: 21 DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-------APNLVGMLVDE 73 + I +DTE RD+L + + +G + + N + LV +L D Sbjct: 6 NFIVIDTE------GRDQLREIAIINAEGELIYEAFSQEDPNYYGRRLKSKPLVDILADF 59 Query: 74 KR---EKIF--HYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNL 123 ++ EK+ H DI VL +F C+ ++ + + L+ Sbjct: 60 QKIASEKVIICHNANHDIQVLKNSFKKVSIDWQNLNFQCSLELAKNSFPNLPSYSLEYLS 119 Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 K+ LG+ ++ + +Q A D + L + +K Sbjct: 120 KQ-LGLKVNHKY---------FNPQQAHAARYDAEFTYQLYRKIMDK 156 >gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021] gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21] Length = 205 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 56/186 (30%) Query: 23 IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G L + CI+++ D VD I Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFT 168 + L T Sbjct: 172 VYLMMT 177 >gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 798 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 65/217 (29%), Gaps = 41/217 (18%) Query: 11 IPAECAARYVDAIAVDTETLGLMPRRDRLCIV--QLSPGDGTV---------------DI 53 + A A +A D E GL+ + ++ Q S G D Sbjct: 276 LEAMLAKNRTPVMAFDAEGTGLVWCKGSTRVILNQFSYRPGESFMAPTHPLYYEKVFNDP 335 Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRT 112 A + + L DE+ K+ H +FD V G+ VR + T++ + Sbjct: 336 NPGAKAEALQGQVKRFLEDERVRKLAHNLKFDHQVSARE-GIEVRGWLHDTQLMAFFADE 394 Query: 113 YTNQHGLKDNLKEL----------LGINISKAQQSSDWSADDLSDE--------QLQYAA 154 L D + + I K+ + D DD+ D YA Sbjct: 395 NMMSKSLDDCTRVWVPEMAGYADNFNMAIDKS-KMMDVPPDDILDADGKVVQYGMRNYAG 453 Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191 D L + + L+ R C + A Sbjct: 454 GDTDACLRLAQRLDKILREDPRQ---YQCYRRIQMPA 487 >gi|326484044|gb|EGE08054.1| exonuclease [Trichophyton equinum CBS 127.97] Length = 732 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 47/165 (28%), Gaps = 41/165 (24%) Query: 6 VHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDII-------- 54 V + DI D A+D E T G R+ +V DG + Sbjct: 340 VPDRDIAEGSVTAGRDIFALDCEMCITEGGKSELTRISLV---SWDGERVLDEFVKPENP 396 Query: 55 --------------RIAAGQKNAPNLVGMLVD---EKREKIFHYGRFDIAVLFYTFGVRV 97 ++ N ++ L++ + I H D+ L Sbjct: 397 IIDYLTRFSGVTKEKLDPVTTNLSDIQQKLLNILTPRSILIGHSLNSDLNALK-----LT 451 Query: 98 RP-VFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSD 139 P + T A+ R + LK + LG I K D Sbjct: 452 HPFIVDT--AAIYPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHD 494 >gi|326476075|gb|EGE00085.1| exonuclease [Trichophyton tonsurans CBS 112818] Length = 734 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 47/165 (28%), Gaps = 41/165 (24%) Query: 6 VHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDII-------- 54 V + DI D A+D E T G R+ +V DG + Sbjct: 340 VPDRDIAEGSVTAGRDIFALDCEMCITEGGKSELTRISLV---SWDGERVLDEFVKPENP 396 Query: 55 --------------RIAAGQKNAPNLVGMLVD---EKREKIFHYGRFDIAVLFYTFGVRV 97 ++ N ++ L++ + I H D+ L Sbjct: 397 IIDYLTRFSGVTKEKLDPVTTNLSDIQQKLLNILTPRSILIGHSLNSDLNALK-----LT 451 Query: 98 RP-VFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSD 139 P + T A+ R + LK + LG I K D Sbjct: 452 HPFIVDT--AAIYPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHD 494 >gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pseudoporcinus SPIN 20026] gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus pseudoporcinus SPIN 20026] Length = 1466 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 36/154 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNL 66 P + + D ET GL + ++Q++ G+ Sbjct: 418 PVDMDLHEATYVVFDVETTGLSAINND--LIQIAASKMYKGNIIEQFDEFINPGHPLSTF 475 Query: 67 VGMLV---------DEKREKIF--------------HYGRFDIAVL-----FYTFGVRVR 98 L + K+ H FD+ + + + + Sbjct: 476 TTELTGITDNHLIGAKPILKVLEAFQDFCQNTILVAHNASFDVGFMNANYERHQLPLINQ 535 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 PV T +R +HGL K +++ Sbjct: 536 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 568 >gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM 6192] gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM 6192] Length = 198 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 19/88 (21%) Query: 78 IFHYGRFDIAVL---FYTFGVRVRPVF---CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + H FD++ L + G R P F T++ +R + ++ L + L I + Sbjct: 103 VAHNAPFDLSFLRMEYARCG-RPYPGFRAIDTRLLARSVLPHLGRYSLASLTRA-LDIPL 160 Query: 132 SKAQQSSDWSADDLSDEQ----LQYAAS 155 LSD L YA + Sbjct: 161 QHHH-------RALSDAWACGDLFYALA 181 >gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W1] gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus epidermidis M23864:W1] Length = 900 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 35/165 (21%) Query: 63 APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTRT 112 AP + D + + H FD+ + F R + V T ++ Sbjct: 68 APYFNEVAEDIYNQIKDCIFVAHNISFDLNFIKNAFDNCNIQFRPKKVMDTLELFKIAFP 127 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD----------------WSADDL-SDEQLQYAAS 155 + L + + I ++ A +D + L + +QL Y + Sbjct: 128 TDKSYQLSELAQSH-NIPLTNAH-RADEDATTTAKLMIKAFEKFENLPLDTQKQLYYLSK 185 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS---CCNFLMDRAELDLLG 197 D+ + L E + R +S ++ R ++DL G Sbjct: 186 DLKY--DLYNILFEMV-RNNQSKPLDEKFGQFEQIIYRKQVDLKG 227 >gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] Length = 1450 Score = 36.1 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53 A A + D ET GL D L V++ G D +D Sbjct: 415 DAHEALNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474 Query: 54 ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100 + G K+ ++ M + + + H FD+ L + +G+ PV Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPV 534 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T +R + GL K+ G+++ + ++ Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570 >gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733] gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium PC4.1] gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733] gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12] gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium PC4.1] Length = 1450 Score = 36.1 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53 A A + D ET GL D L V++ G D +D Sbjct: 415 DAHEALNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474 Query: 54 ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100 + G K+ ++ M + + + H FD+ L + +G+ PV Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPV 534 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T +R + GL K+ G+++ + ++ Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570 >gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T] gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T] Length = 482 Score = 36.1 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 44/133 (33%), Gaps = 32/133 (24%) Query: 25 VDTETLGLMPRRDRLCIVQL-SPGDGTVD-----------IIRIAAGQ---------KNA 63 +D E+ G P RDR+ + + DG V I + A Sbjct: 10 IDVESTGAHPVRDRITEIAILRVEDGEVVARWESLVAPGQPIPPLIEEVTGISDAMVAEA 69 Query: 64 PNLVGMLVD------EKREKIFHYGRFDIAVLFYTF---GVRV-RPVFCTKIASRLTRTY 113 P +L D E + H RFD + F G PV CT SR Sbjct: 70 PAF-EVLADTVAALLEGCVFVAHSARFDYGFIRNAFTRIGREFEAPVLCTVKLSRALYPE 128 Query: 114 TNQHGLKDNLKEL 126 ++HGL ++ Sbjct: 129 HHRHGLDALIERH 141 >gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola ATCC 35405] gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405] gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola F0402] Length = 217 Score = 36.1 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 42/151 (27%), Gaps = 40/151 (26%) Query: 24 AVDTETLGLMPRRDRL-----------CIVQLSPGDGTVDIIRIAAGQKNA--------- 63 A DTET G + +R+ ++ V I A Sbjct: 18 AFDTETTGTEAKAERVVEIGCVKFDIRGVI----ARYNVLIDPEKPMPPEAGKVNQITDE 73 Query: 64 -----PNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASR 108 P +L D + H FDI + VF T +R Sbjct: 74 MLAGQPKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGKTKLTNKVFDTLTFAR 133 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 T + L++ + G+ A ++ D Sbjct: 134 ETLPGLQSYALQNLATQF-GVQAVNAHRAED 163 >gi|12321961|gb|AAG51018.1|AC069474_17 hypothetical protein; 78912-79874 [Arabidopsis thaliana] Length = 308 Score = 36.1 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 38/143 (26%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101 +QL G+ II++ + +L L D + V+ Sbjct: 187 LQLCVGN-QCLIIQLCHCDQVPTSLRSFLTDPNTTFV--------------------GVW 225 Query: 102 CTKIASRLTRTYT----------NQHGLKDNLKELLG-----INISKAQQSSDWSADDLS 146 ++ A +L R+ ++ + E LG + + A SDWS L Sbjct: 226 NSQDAGKLARSKHQLEIGKLLDIRGCSFEEIVDEFLGSPGSGLRLDPAISMSDWSVHVLD 285 Query: 147 DEQLQYAASDVV--HLHALRLQF 167 +Q+ A+ DV HL + + Sbjct: 286 RDQVLQASIDVHVCHLLGVMARL 308 >gi|327349600|gb|EGE78457.1| exonuclease [Ajellomyces dermatitidis ATCC 18188] Length = 727 Score = 36.1 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 48/164 (29%), Gaps = 37/164 (22%) Query: 5 RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRI----A 57 V E DI + +++D E T G + R+ +V DG V + + Sbjct: 331 TVSENDIQQGSITSGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDELVKPEK 387 Query: 58 AGQKNAPNLVGM---------------------LVDEKREKIFHYGRFDIAVLFYTFGVR 96 G+ LV I H D++ L Sbjct: 388 PIIDYLTRFSGITKEMLDPVTTRLPDVQQRLLSLVGPHTILIGHSLNSDLSALK-----L 442 Query: 97 VRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 P + T I R + LK ++ LG I K Q D Sbjct: 443 THPFIIDTSIIYPHPRGSPLKSSLKWLSQKYLGKEIQKGQAGHD 486 >gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49] Length = 374 Score = 36.1 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 6/89 (6%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR 98 +Q G + + AP L L + + + H FD L F G+ Sbjct: 62 IQQLTGISEAMVRDAPSFASLAPALFERL--DGKLFVAHNASFDRGFLRAEFERAGLAFN 119 Query: 99 P-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 P V CT SR ++HGL ++ Sbjct: 120 PDVLCTVRLSRALFPRESRHGLDALIERH 148 >gi|239608400|gb|EEQ85387.1| exonuclease [Ajellomyces dermatitidis ER-3] Length = 767 Score = 36.1 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 48/164 (29%), Gaps = 37/164 (22%) Query: 5 RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRI----A 57 V E DI + +++D E T G + R+ +V DG V + + Sbjct: 371 TVSENDIQQGSITSGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDELVKPEK 427 Query: 58 AGQKNAPNLVGM---------------------LVDEKREKIFHYGRFDIAVLFYTFGVR 96 G+ LV I H D++ L Sbjct: 428 PIIDYLTRFSGITKEMLDPVTTRLPDVQQRLLSLVGPHTILIGHSLNSDLSALK-----L 482 Query: 97 VRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 P + T I R + LK ++ LG I K Q D Sbjct: 483 THPFIIDTSIIYPHPRGSPLKSSLKWLSQKYLGKEIQKGQAGHD 526 >gi|261203129|ref|XP_002628778.1| exonuclease [Ajellomyces dermatitidis SLH14081] gi|239586563|gb|EEQ69206.1| exonuclease [Ajellomyces dermatitidis SLH14081] Length = 727 Score = 36.1 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 48/164 (29%), Gaps = 37/164 (22%) Query: 5 RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRI----A 57 V E DI + +++D E T G + R+ +V DG V + + Sbjct: 331 TVSENDIQQGSITSGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDELVKPEK 387 Query: 58 AGQKNAPNLVGM---------------------LVDEKREKIFHYGRFDIAVLFYTFGVR 96 G+ LV I H D++ L Sbjct: 388 PIIDYLTRFSGITKEMLDPVTTRLPDVQQRLLSLVGPHTILIGHSLNSDLSALK-----L 442 Query: 97 VRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 P + T I R + LK ++ LG I K Q D Sbjct: 443 THPFIIDTSIIYPHPRGSPLKSSLKWLSQKYLGKEIQKGQAGHD 486 >gi|221132377|ref|XP_002166732.1| PREDICTED: similar to YALI0B15400p [Hydra magnipapillata] Length = 943 Score = 36.1 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 8/79 (10%) Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119 Q +L+ ++ I H FD+ L + T + R + L Sbjct: 358 QDVQRDLLKIIQ-PDTILIGHSLDFDLRSLMLHHD----NIIDTSVLYVDNRGPRYKSSL 412 Query: 120 KDNLKELLGINI---SKAQ 135 + +K L +I K Sbjct: 413 RCLVKSYLNRDIQNTDKGH 431 >gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae T3T1] Length = 253 Score = 36.1 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 53/186 (28%), Gaps = 56/186 (30%) Query: 23 IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G+ + CI+++ D VD I Sbjct: 8 IVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPDRLVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR--------VRPVFC 102 + P+ + D E + H FD+ + Y F + V Sbjct: 68 TDEMLADKPDFKTIAQDFIEYIRGAELLIHNAPFDVGFMDYEFRKLGLDIKTTDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNSLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFT 168 + L T Sbjct: 172 VYLSMT 177 >gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217] gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217] Length = 688 Score = 36.1 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 19/102 (18%) Query: 78 IFHYGRFDIAVLFYTFGVRVR----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H FD+A L V R PV CT + S ++ QH L GI I Sbjct: 579 VAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLMSAGLFDHSGQHTLDALCDRF-GITIPP 637 Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + + A D V + ++ LQ G Sbjct: 638 EARHT--------------AMGDTVATAEVFVRMLGLLQAKG 665 >gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613] gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613] Length = 1565 Score = 36.1 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP----VFCTKIA-S 107 ++ P + + D + H FD+ + + P V T +A + Sbjct: 601 VLPYPKIDVILPQFLEFVGDA--VLVAHNASFDVGFIGHFAEKLELPFDPTVLDT-VAIA 657 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 RL N+ L + + L I++ ++ D Sbjct: 658 RLLLPNLNRFKLDT-VAKALNISLQNHHRAVD 688 >gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis] gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis] Length = 963 Score = 36.1 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 43/159 (27%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT----FGVRVRPVFCTKIA 106 VD++ G+ + + +K++H FD V+ G T Sbjct: 251 VDVLD-GGGRDLLVKFKPFFENPEIKKVWHNYSFDKHVIQNYEVPVCGFHA----DTMHM 305 Query: 107 SRL---TRTYTNQHGLKDN---------LKELLGINISKAQQSSDWSADDLSDE------ 148 +RL +R + L+ + I K + + + L + Sbjct: 306 ARLWNSSRRTEGGYSLEALTGDKRVMSGAQSCFEGLIGKVSMKTIFGKNKLKKDGSEGKM 365 Query: 149 ----------------QLQYAASDVVHLHALRLQFTEKL 171 + Y+A D + L KL Sbjct: 366 ITVAPVEELQREEREPWICYSALDAISTWQLYESLKRKL 404 >gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681] gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681] Length = 1438 Score = 36.1 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 11/89 (12%) Query: 61 KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLF---YTFGV--RVRPVFCTKIASRLT 110 K+AP++ ++ + + H RFD+ + G+ PV T +RL Sbjct: 481 KDAPDVEPVMKEFVAFAGDAVLVAHNARFDVGFIQATLRNMGLPEMTNPVLDTLELARLL 540 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 H L + + + ++ D Sbjct: 541 FPTMKNHRLNTLTTKY-KVALESHHRAID 568 >gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68] Length = 1463 Score = 36.1 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 36/153 (23%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDII-------RIAAGQ 60 A+ + D ET GL + ++Q++ G+ + ++ Sbjct: 416 ADVVLSDATYVVFDVETTGLSAVNN--ALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFT 473 Query: 61 KNAP-----------NLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 + L +L + + + H FD+ + + +P Sbjct: 474 TDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVAHNATFDVGFMNVNYERAGLPIISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPDFKRHGLGPLTKRF-GVALE 565 >gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33] gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33] gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84] gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7] gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407] gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus suis 05ZYH33] gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus suis 98HAH33] gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84] gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407] gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7] gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1] gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14] Length = 1463 Score = 36.1 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 36/153 (23%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDII-------RIAAGQ 60 A+ + D ET GL + ++Q++ G+ + ++ Sbjct: 416 ADVVLSDATYVVFDVETTGLSAVNN--ALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFT 473 Query: 61 KNAP-----------NLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 + L +L + + + H FD+ + + +P Sbjct: 474 TDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVAHNATFDVGFMNVNYERAGLPIISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPDFKRHGLGPLTKRF-GVALE 565 >gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591] gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591] Length = 1463 Score = 36.1 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 36/153 (23%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDII-------RIAAGQ 60 A+ + D ET GL + ++Q++ G+ + ++ Sbjct: 416 ADVVLSDATYVVFDVETTGLSAVNN--ALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFT 473 Query: 61 KNAP-----------NLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 + L +L + + + H FD+ + + +P Sbjct: 474 TDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVAHNATFDVGFMNVNYERAGLPIISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPDFKRHGLGPLTKRF-GVALE 565 >gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3] gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3] Length = 1463 Score = 36.1 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 36/153 (23%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDII-------RIAAGQ 60 A+ + D ET GL + ++Q++ G+ + ++ Sbjct: 416 ADVVLSDATYVVFDVETTGLSAVNN--ALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFT 473 Query: 61 KNAP-----------NLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99 + L +L + + + H FD+ + + +P Sbjct: 474 TDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVAHNATFDVGFMNVNYERAGLPIISQP 533 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 V T +R +HGL K G+ + Sbjct: 534 VIDTLEFARNLYPDFKRHGLGPLTKRF-GVALE 565 >gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2] gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2] Length = 1435 Score = 36.1 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 78 IFHYGRFDIAVL---FYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H FD+ L + +G+ V T +R+ H L K+ GI +++ Sbjct: 503 VAHNASFDMGFLYVCYKKYGIDTVHATIDTLELARMLHPELKNHRLNTLAKKF-GIELTQ 561 Query: 134 AQQS 137 ++ Sbjct: 562 HHRA 565 >gi|21228069|ref|NP_633991.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1] gi|20906505|gb|AAM31663.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1] Length = 249 Score = 36.1 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 19 YVDAIAV-DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 + D++A D ET GL P RD++ +V + G+ +R N +LV + Sbjct: 83 FSDSVAFFDIETTGLSPCRDKITVVGIYNGNEVKTYVR----GTNLEDLVEEFSRYRLLV 138 Query: 78 IFHYGRFDIAVLFYTF 93 F+ RFDI + F Sbjct: 139 SFNGARFDIPFIKSEF 154 >gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN] gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923] gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae] gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae] gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923] Length = 911 Score = 36.1 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 12/97 (12%) Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVFCTKI 105 G +D + +A L L D K H + D+A +T G T + Sbjct: 371 GYIDTAMLTPDDDDA--LAAWLADPDNPKALHEAKLAMHDLAGRGWTLGGITS---DTAL 425 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI----SKAQQSS 138 A+ L R L D L + + +Q S Sbjct: 426 AAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQEQFS 462 >gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1] Length = 1442 Score = 36.1 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 36/159 (22%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD---------------- 52 A + D ET GL D + ++++ DG V Sbjct: 417 DAHVHLDEATYVVFDVETTGLSAVYDTI--IEIAAVKIQDGEVVDTFERFANPGRPLSNT 474 Query: 53 IIRIAAGQKN----APNLVGMLV--DEKR---EKIFHYGRFDIAVLFYTFGV--RVR--- 98 II + + AP++ +L +E + H FDI L + Sbjct: 475 IIELTHITDDMLKDAPDISEVLKEYNEWIGDAVLVAHNASFDIGFLNVGLKKAGLPKSNN 534 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T R + L K+ + +++ ++ Sbjct: 535 PVIDTLELGRFLYPDFKNYRLNTLAKKF-NVELTQHHRA 572 >gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603] gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603] Length = 1433 Score = 36.1 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKVGIEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii ATCC 33806] Length = 456 Score = 36.1 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 11/86 (12%) Query: 57 AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV----F-CTKIA 106 +AP+ + + + + H +FD+ PV F C+ A Sbjct: 170 PDMVTDAPDFATVFPEVVAYVADQVLVAHNAQFDLTAFSRACHATGTPVPHWKFACSLAA 229 Query: 107 SRLTRTYTNQHGLKDNLKELLGINIS 132 SR + H L + + LG+ + Sbjct: 230 SRAAKLGITSHRL-PVVAQHLGVELD 254 >gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 2503V10-D] gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 2503V10-D] Length = 1424 Score = 36.1 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552 >gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT] gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336] gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT] gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336] Length = 252 Score = 36.1 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 54/184 (29%), Gaps = 56/184 (30%) Query: 25 VDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDI---------I 54 +DTET G+ + CI+++ D VD Sbjct: 13 LDTETTGMNEFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPDRLVDPEAIKVHGITD 72 Query: 55 RIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTK 104 + A + + + +D + E I H FDI + Y F + T Sbjct: 73 EMLADKPDFSAIAQEFIDFIKGAELIIHNAPFDIGFMDYEFKKHNFNINTADICLITDTL 132 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 +R ++ L L NI ++++ L A D L + Sbjct: 133 QMAR-QMYPGKRNSLDALCDRL---NIDNSKRT------------LHGALLDAEILGDVY 176 Query: 165 LQFT 168 L T Sbjct: 177 LAMT 180 >gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella australiensis 50-1 BON] gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella australiensis 50-1 BON] Length = 1427 Score = 36.1 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 31/150 (20%) Query: 20 VDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDI-------IRIAAGQKNAPNLVGM 69 D + +D ET GL D++ V++ G + + I N + Sbjct: 413 SDMVVLDIETTGLNAGTDKIIEIGAVRIKDGKYKDEFSSFINPHVPIPPSIVNLTGITDD 472 Query: 70 LVDE----------------KREKIFHYGRFDIAVLFYTFGVR----VRPVFCTKIASRL 109 +V + H +FD+ + PV T +R Sbjct: 473 MVSNAPDEGDVLQRFMEFAGDAVLVAHNAQFDMGFIRQHGQKYNLKFANPVLDTLTLARQ 532 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139 + L L I++ ++ D Sbjct: 533 LFKGLKHYKLDTL-AHHLHIDMDNHHRAVD 561 >gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469] gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469] Length = 1010 Score = 36.1 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 53/189 (28%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLS---------PGDGTVDI-----IRIAAGQKN--- 62 D + D ET G+ + D ++++S G+ + + I AA + N Sbjct: 23 ADYVVFDLETTGISSKYDE--VIEISAVKVEAGQVTGEFSTLVNPGRKIPPAASRVNGIT 80 Query: 63 ------APNLVGMLVD-----EKREKIFHY-GRFDIAVLFYTFGVRVRPV-----FCTKI 105 A +L D + H FD+ L+ R V T + Sbjct: 81 DKMVAGALPFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVPDNDYVDTLL 140 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 +R + H L D + GI+ A + A +D + Sbjct: 141 LARAALPELSHHRLVDLAEHY-GISAKGAHR----------------ALNDCHMNQKVYG 183 Query: 166 QFTEKLQRL 174 + E+ + Sbjct: 184 KLAEEAEAA 192 >gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae] Length = 907 Score = 36.1 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 12/97 (12%) Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVFCTKI 105 G +D + +A L L D K H + D+A +T G T + Sbjct: 367 GYIDTAMLTPDDDDA--LAAWLADPDNPKALHEAKLAMHDLAGRGWTLGGITS---DTAL 421 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI----SKAQQSS 138 A+ L R L D L + + +Q S Sbjct: 422 AAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQEQFS 458 >gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950] Length = 908 Score = 36.1 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 9/91 (9%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101 + G+G I ++ L L D K H + D+A G + V Sbjct: 366 ADGEGR-YIDTATLDPEDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWTLAGVT 420 Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +A+ L R L D L + Sbjct: 421 SDTALAAYLVRPGQRSFSLDDLSLRYLRREL 451 >gi|167394004|ref|XP_001740800.1| hypothetical protein [Entamoeba dispar SAW760] gi|165894891|gb|EDR22723.1| hypothetical protein EDI_336220 [Entamoeba dispar SAW760] Length = 536 Score = 36.1 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 12/140 (8%) Query: 35 RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94 R LCI+ ++ + V ++ I +++ + + EK+ + F I L+Y F Sbjct: 182 YRGYLCILFIAFSNF-VYVLDILKLKESFEIISILFESTSIEKVCYKA-FGIRTLYYQFK 239 Query: 95 VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 + VF +A + + D K + I + + +W S + + Sbjct: 240 ITTNNVFLLDVA---CQKMNICYNYSDLFKTMTN-RIP--ETNDEWMIRPYSKYIICWFG 293 Query: 155 SDVVHLH----ALRLQFTEK 170 D + L +R + E+ Sbjct: 294 LDTLQLLNFSIKIRNKLIEQ 313 >gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis M50/1] Length = 911 Score = 35.7 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 23/127 (18%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR-PVFCTKIASR 108 +I + P + + + H FD++ + G+ + T +R Sbjct: 540 VIDAPKIETILPQFME-FCGDAIM-VAHNADFDMSFIIKNCERQGIEKEFTIIDTVALAR 597 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + N+ L + + LG+++ + A D + ++F Sbjct: 598 ILLPQLNRFKLDT-VAKALGVSLENHHR----------------AVDDAGCTAEIFVKFV 640 Query: 169 EKLQRLG 175 + L G Sbjct: 641 KMLHDRG 647 >gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1] gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1] Length = 883 Score = 35.7 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 44 LSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 L+ D + + I ++ L + E +K FH + + + + + ++ Sbjct: 353 LAMEDHDIYRLAIQNKDSDSDPCLTVLKAICECESVKKYFHDAKQAL-WMLHHHSIELKA 411 Query: 100 V-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + T +++ L + + + D E LG+ + Sbjct: 412 LAADTMVSAYLLNPTASNYDINDVALEHLGMVL 444 >gi|302838749|ref|XP_002950932.1| hypothetical protein VOLCADRAFT_91413 [Volvox carteri f. nagariensis] gi|300263627|gb|EFJ47826.1| hypothetical protein VOLCADRAFT_91413 [Volvox carteri f. nagariensis] Length = 254 Score = 35.7 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%) Query: 59 GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 G +L +L D K + R D L +GVR+R V ++A Sbjct: 74 GLDGVTSLKRLLEDPVVIKYLYDVRRDAEALSSEYGVRLRGVVDLQLA 121 >gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 60-B] gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 60-B] Length = 1424 Score = 35.7 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552 >gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] Length = 662 Score = 35.7 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 6/94 (6%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102 + D V +I + A + +V L D K F+ + FG++ P C Sbjct: 46 AYDDDPVQVIDLTAFEDLPDQVVHDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRC 105 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136 T + + L G + + E+L + K + Sbjct: 106 TAVWA-LALGLP---GYLEGVAEVLKLEAQKDTR 135 >gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 3008A-a] gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2062A-h1] gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2062A-h1] gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 3008A-a] Length = 1420 Score = 35.7 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 393 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 449 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 450 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 509 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 510 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 548 >gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH] gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH] Length = 256 Score = 35.7 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 56/186 (30%) Query: 23 IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G L + CI+++ D VD I Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFT 168 + L T Sbjct: 172 VYLMMT 177 >gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 1401G] gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners SPIN 1401G] Length = 1424 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552 >gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 143-D] gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners UPII 143-D] Length = 1416 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 389 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 445 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 446 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 505 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 506 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 544 >gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195] gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195] Length = 1424 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552 >gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2053A-b] gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2053A-b] Length = 1424 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552 >gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359] gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359] Length = 1367 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 29/141 (20%) Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTK-IASRLTR 111 A ++ P + L D + H FD L + +P T +A L R Sbjct: 424 AIEEVLPEFLEFLED-SIL-VAHNANFDYRFLRLWIKKVLGKDWEKPYVDTLALAKSLLR 481 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + L +K+ LG+ + + A D + L+F E + Sbjct: 482 --LKSYSLDSVVKK-LGLGSFRHHR----------------ALDDARVTAQVFLRFIEMM 522 Query: 172 QRLGRSDLATSCCNFLMDRAE 192 +++G + L S L D + Sbjct: 523 KKIGITKL--SEMEKLKDSVD 541 >gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu] Length = 375 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 6/89 (6%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR 98 +Q G + + AP L L + + + H FD L F G+ Sbjct: 62 IQQLTGISDAMVRDAPSFASLAPALFERL--DGKLFVAHNASFDRGFLRAEFERIGLAFN 119 Query: 99 P-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 P V CT SR ++HGL ++ Sbjct: 120 PDVLCTVRLSRALFPRESRHGLDALIERH 148 >gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1] gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1] Length = 1375 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 8/91 (8%) Query: 54 IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIA 106 + G + D + H FD+ L +G PV T Sbjct: 481 DDMVEGAPEVAEALKAFKDWAGDAVLVAHNASFDMGFLNVGYGKAGLDKAENPVIDTLEL 540 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +RL H L K+ + +++ ++ Sbjct: 541 ARLLYPEMKNHRLNTLAKKF-DVELTQHHRA 570 >gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3] Length = 235 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 53/179 (29%), Gaps = 56/179 (31%) Query: 26 DTETLGLMPRRDRLCIVQLS------------------PGDGTVDIIRI----------A 57 DTET GL DR+ +++ G V + Sbjct: 7 DTETTGLNKESDRI--IEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVIAIHGLTNEHL 64 Query: 58 AGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVLFYTFGVRVRPV------FCT-KIASR 108 +KN ++V L+D + + H FDI L G +P+ T IA R Sbjct: 65 KDEKNFEDIVDALLDFIDNATIVAHNANFDIGFLNAELGRVNKPLVSSDNVIDTLSIARR 124 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 R + L K I + + L A D L + ++ Sbjct: 125 --RFPMGPNSLDVLCKRF---GIDNSHRV------------LHGALLDAEILADVYIEL 166 >gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] Length = 904 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 2/93 (2%) Query: 41 IVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 +V ++ DG IR + L G L D K FH ++ L + Sbjct: 356 LVAIAGADGHGAAIRTETMTPEDVRALDGWLADPAVPKAFHEAKWATHALRGGGFAEIAG 415 Query: 100 VF-CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 V T +A+ + R L D L + Sbjct: 416 VTTDTGLAAYIARPGQRSFNLPDLALRYLRRQL 448 >gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2052A-d] gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LEAF 2052A-d] Length = 1420 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 393 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 449 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 450 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 509 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 510 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 548 >gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335] gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners AB-1] gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335] Length = 1420 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 393 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 449 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 450 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 509 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 510 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 548 >gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] Length = 811 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 28/155 (18%) Query: 44 LSPGDGTVDIIR---IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRP 99 ++ G + + + G L + D D+ + G+ Sbjct: 271 IALTKGEIYYVPVEGLLTGDYICAALKEI-ADSTIL-----CSIDVKSMLKHVGLEDADH 324 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGIN--------ISKAQQSSDWSADDLSDEQLQ 151 VF T +A L + + D +E L + K + W SD + Sbjct: 325 VFDTGVAVYLLNPLKSSYTFDDIAREYLDGALLPTRTDLLGKDSLKAAWEKS--SDGLMS 382 Query: 152 YAASDVVHL----HALRLQFTEKLQRLGRSDLATS 182 YA HL +A R L+ ++ Sbjct: 383 YAC----HLAYTAYATREPIENALKETEMWNVYRE 413 >gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 03V1-b] gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 03V1-b] Length = 1424 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQDFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552 >gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1] Length = 205 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 8/97 (8%) Query: 46 PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPV 100 G T +I K P+ + + + + H RFD+A L + P Sbjct: 64 TGITTAMVIDQPTVDKVLPDFLNFIENT--ILVGHNIRFDLAFLNKKAKEILNKTIKNPF 121 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 CT +R + + L + I S+ ++ Sbjct: 122 ICTDHLARKILSDIDSKSLASIAQHF-NIPFSRQHRA 157 >gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001] gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001] Length = 386 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 6/111 (5%) Query: 33 MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89 P++ +Q G + + AP L L + + + H FD L Sbjct: 53 DPQQPIPSFIQQLTGITNAMVRGAPTFEAIAPELFARL--DGKLFVAHNASFDRGFLRGE 110 Query: 90 FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 F G+ P V CT SR +HGL ++ + + + +D Sbjct: 111 FRRVGISFDPDVLCTVRLSRALFPSEKRHGLDALVERHALVPSDRHRALAD 161 >gi|159466864|ref|XP_001691618.1| predicted protein [Chlamydomonas reinhardtii] gi|158278964|gb|EDP04726.1| predicted protein [Chlamydomonas reinhardtii] Length = 2077 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 49/175 (28%), Gaps = 42/175 (24%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG------- 118 L +L + + KI + ++ L G V + + ++ + G Sbjct: 775 LRQLLENPGQHKIVYGAEQAVSCLEVATGATAVAVLDVRGLAHVSALHAALVGTGVWTEA 834 Query: 119 ---LKDNLKEL---LGINISKAQQSSDWS---ADDLSDEQLQYAASDVVHLHALRLQFTE 169 L + L ++ A DW L+D + AA+ HL L + Sbjct: 835 PELLAALVARHATALRDDLWAADGR-DWMWLQQRPLADGVVLLAAAGCRHLPELWTSLID 893 Query: 170 --------------KLQRLGRSD------LAT-----SCCNFLMDRAELDLLGWE 199 +LQ G D A C F A G+ Sbjct: 894 ERRLADVAYQAATLRLQAPGNLDSTATDVWAEPSAPTPDCAFGPLPASHPFAGYP 948 >gi|154293583|ref|XP_001547297.1| predicted protein [Botryotinia fuckeliana B05.10] gi|150845300|gb|EDN20493.1| predicted protein [Botryotinia fuckeliana B05.10] Length = 451 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 32/146 (21%) Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASRLTRTYTNQH 117 + +L +L R +++ R D LF+ FG++V V K+ SR +R +N Sbjct: 204 DDGLSLKQILELNDRIQLWWDVRSDWDTLFHKFGIQVGKVRDVKLKELLSRFSR-QSNIF 262 Query: 118 GLKDNLKELLGINI-------------------SKAQQSSDWS---ADDLSDEQLQYAAS 155 GL ++ G I SK W L+ Y A Sbjct: 263 GLHR-VRRDEGRYIMSPHKLNTWPRKKTAGGAYSKRHG---WRPVTTRPLTRTARNYIAG 318 Query: 156 DVVHLHALRLQFTEKLQRLGRSDLAT 181 D L L + + L D+ Sbjct: 319 DTECLFGLHKRLYDNL--ENWLDMTQ 342 >gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC 39073] gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC 39073] Length = 921 Score = 35.7 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 36/149 (24%) Query: 22 AIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD-----------IIRIAA----GQKNA 63 + +D ET GL P RDR+ ++++ G + I A G +A Sbjct: 6 YVVLDVETTGLDPARDRI--IEIAAVRLEGGNITRQFQTLVNPGRPIPPAIERLTGISDA 63 Query: 64 ------------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLT 110 P L+ + D + H G FD+A L G P+ T SR+ Sbjct: 64 MVREAPPLPEVLPGLLDLFRDA--IPVGHNGTFDLAFLNQALGHGWHSPLLDTLALSRIL 121 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 H L + L + + ++ D Sbjct: 122 FPCLASHRLDYM-SKYLTLEATGHHRALD 149 >gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] Length = 867 Score = 35.7 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 23/180 (12%) Query: 5 RVHEGDIPAECAARYVDAIA-VDT--ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61 +V + ++P A D A +D E +G D L + + + + + + Sbjct: 298 QVPQVELPEVVATSGADLRAWLDAVEEPVGFALEDDTLGL----ASNDSAIWVDLTDLDE 353 Query: 62 NAPNLVGMLVDEKREKIFHYGRFDI-AVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 N+ N + + K+ + H + + A + F + RP+ T++A+ L + L Sbjct: 354 NSFNALDTFISTKKV-VAHDVKPQVHAWVERGF-TQPRPIMDTELAAYLLAPDARGYSLA 411 Query: 121 DNLKELLGINISKAQQSSDWSADDLSD--EQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 D + LG+ + + D L+D EQL + A AL + + L+R D Sbjct: 412 DMASD-LGVVLEED-------RDLLTDVGEQLGHRA---WVTVALYPRLRQDLERNHLQD 460 >gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 885 Score = 35.7 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 28/153 (18%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYT 114 I+ + + L ++ DEK EK+ + + DI +L G+ ++ +IA L + Sbjct: 354 ISYEEIDFDFLKKIMEDEKVEKLGYSLKEDIIILM-DLGIDIKNYSHDVEIAEYLLNSTQ 412 Query: 115 NQH------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 + + G D ++LLG +K + +D DDL +Y A L+ Sbjct: 413 SDYDINKISMAYFKNGYLDL-EDLLGKG-AKKKTYADLDKDDL----FKYFA---FVLNT 463 Query: 163 LRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195 + +L+ L + + L EL L Sbjct: 464 IY-----RLEDLQKEKIDEEEMTSLYQDMELPL 491 >gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. viciae 3841] gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 240 Score = 35.7 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 48/180 (26%), Gaps = 58/180 (32%) Query: 26 DTETLGLMPRRDRLCIVQLS-------------------PGDGTVDIIRIA------AGQ 60 DTET GL R DR+ +++ PGD V +A Sbjct: 7 DTETTGLDNRADRI--IEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGITDEFL 64 Query: 61 KNAPNLVGMLVDEKRE-------KIFHYGRFDIAVLFYTFG------VRVRPVFCTKIAS 107 K+ + E+ I H FD+ + F + V T + Sbjct: 65 KDKQPFAEV--AEQILTFFGDAKWIAHNATFDMGFINAEFARIGLPPILPERVLDTLSMA 122 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 R L + I + ++ A D L + ++ Sbjct: 123 RRKHPMGPN-SLDALCRRY---GIDNSHRT------------KHGALLDSELLAEVYIEM 166 >gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia intestinalis XB6B4] Length = 905 Score = 35.7 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 23/127 (18%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR-PVFCTKIASR 108 +I + P + + + H FD++ + G+ + T +R Sbjct: 534 VIDAPKIETILPQFME-FCGDAIM-VAHNADFDMSFIIKNCERQGIEKEFTIIDTVALAR 591 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + N+ L + + LG+++ + A D + ++F Sbjct: 592 ILLPQLNRFKLDT-VAKALGVSLENHHR----------------AVDDAGCTAEIFVKFV 634 Query: 169 EKLQRLG 175 + L G Sbjct: 635 KMLHDRG 641 >gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4] gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4] Length = 1432 Score = 35.7 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L G PV T R H L K+ I + Sbjct: 500 VAHNASFDMGFLNVGYQKIGLGDATNPVIDTLELGRFLYPELKNHRLNTLCKKF-DIELV 558 Query: 133 KAQQS 137 ++ Sbjct: 559 SHHRA 563 >gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO] Length = 663 Score = 35.7 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVL---FYTFGV--RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L + +G+ PV T +R + GL K+ G+++ Sbjct: 509 VAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYPQFKRFGLGVLSKKF-GVSLE 567 Query: 133 KAQQS 137 + ++ Sbjct: 568 QHHRA 572 >gi|300781564|ref|ZP_07091418.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] gi|300533271|gb|EFK54332.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] Length = 1474 Score = 35.7 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 25/134 (18%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHY-GRFDIAVLFYTFGVRVRPVF------CTKIASR 108 A A L+ +L + + H ++D+ VL +G+ V + T I R Sbjct: 937 PVATTDIAGELIPLLE-QADTIVGHNIVQYDLPVLQRLYGLDVGALIKAGKVRDTLIMVR 995 Query: 109 LTRTYTNQHGLK-DNLKELLGIN-------------ISKAQQSSDWSADDL-SDEQLQYA 153 L D + G++ ++K D + + E ++YA Sbjct: 996 LASGGNRNLEYNLDAVAHRCGVDGKLLAGSESALKALAKQYGGFD--KIPVDNPEYVEYA 1053 Query: 154 ASDVVHLHALRLQF 167 DV A+ + Sbjct: 1054 LQDVRANGAVYEKL 1067 >gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795] gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795] Length = 1432 Score = 35.7 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 23/138 (16%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR 98 VQ G I ++ P + + D + H FDI + + + Sbjct: 466 VQELTGITNDLIKDKPTIEEILPKFMEFVGDS--VLVAHNAEFDIGFINQKCKEMNIEFK 523 Query: 99 P-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 T + +R+ + + L + KE LG+ + + A D Sbjct: 524 NKSVDTLMLARILLPHLKRFKLNNLTKE-LGVPLHNHHR----------------AVDDA 566 Query: 158 VHLHALRLQFTEKLQRLG 175 + ++F + LQ+ G Sbjct: 567 AATAQIFIKFLDMLQKKG 584 >gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01] gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01] Length = 637 Score = 35.7 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 38/134 (28%), Gaps = 22/134 (16%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116 ++ P L D + H G FD+A L G+ P+ T + S L Sbjct: 518 PKLEEVLPGFRLFLEDT--VLLAHNGAFDMAFLRR-VGIDQPPLVDTLLLSYLLFPDLQD 574 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 H L+ + G+ + A D + + L+ G Sbjct: 575 HRLETLAERF-GVPVIGRHT----------------ALGDALMTAEVFAGMVPLLRAKGY 617 Query: 177 SDL--ATSCCNFLM 188 L C L Sbjct: 618 RTLGEVLRACARLP 631 >gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866] Length = 256 Score = 35.7 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 56/186 (30%) Query: 23 IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G L + CI+++ D VD I Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFT 168 + L T Sbjct: 172 VYLMMT 177 >gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 203 Score = 35.7 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 30/121 (24%) Query: 62 NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIAS 107 + P + D E I H FD+ L + + + V T + + Sbjct: 66 DKPRFADLAADFLDYIRGAELIIHNAPFDVGFLNHELQLMGADSPPIGELCAVIDTLVMA 125 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + ++ L K ++ Q+ +L A D L + L Sbjct: 126 KKMHP-GQRNSLDALCKRY---DVDNTQR------------ELHGALLDAEILADVYLAM 169 Query: 168 T 168 T Sbjct: 170 T 170 >gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741] gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741] Length = 1451 Score = 35.7 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 36/154 (23%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTV---------------------- 51 R + DTET GL + D+ +++L+ G V Sbjct: 428 LRDATYVIFDTETTGLSAQYDK--VIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTINLT 485 Query: 52 -DIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCT 103 + G K+ + + + + + H FD+ + + + P T Sbjct: 486 SITDDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDT 545 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +R L K+ L I + ++ Sbjct: 546 LPLARYLYPEMKGFRLNTLAKK-LNIKLEHHHRA 578 >gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC 17616] gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 398 Score = 35.7 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 6/111 (5%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + + V T T + P + +Q G + + + AP L L + + + Sbjct: 63 IGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRDAPSFAELAPALFERL--DGKLFVA 120 Query: 80 HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 H FD L F G P V CT SR ++HGL + Sbjct: 121 HNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALFPRESRHGLDALIARH 171 >gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555] gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016] gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555] gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 880 Score = 35.7 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Query: 69 MLVDEKREKIFHYGRFDIAV---LFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124 + + K+ +D+ V + + G+++ + F KIA+ L + L D +K Sbjct: 382 LFENSSLSKV----SYDVKVPCSILHRMGIKLLGIEFDIKIAAYLMDPARTNYELPDIIK 437 Query: 125 ELLGINIS 132 E L I IS Sbjct: 438 EYLNIEIS 445 >gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia chaffeensis str. Sapulpa] gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia chaffeensis str. Sapulpa] Length = 239 Score = 35.7 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 54/201 (26%), Gaps = 72/201 (35%) Query: 18 RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV------DIIRIAAG------------ 59 + V + +DTET GL P GD + I R+ G Sbjct: 5 KGVREVVLDTETTGLDP----------DGGDRVIEIGCVELIDRVFTGKVFHEYINPERD 54 Query: 60 ---------------QKNAPNLVGM------LVDEKREKIFHYGRFDIAVLFYTFGVRVR 98 K+ P + +D + H FDI + + Sbjct: 55 IPYYATKIHGITIDMLKDKPKFSEIADKFLEFIDNGIL-VIHNAGFDIKFIKMELDRINK 113 Query: 99 P------VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 V T + +R + L + NIS L D + Sbjct: 114 SYNSDFQVVDTLVLARK-KFPGVSSTLDALCRRF---NIS------------LQDRKFHG 157 Query: 153 AASDVVHLHALRLQFTEKLQR 173 A D L + +Q LQR Sbjct: 158 ALLDATLLGKVYVQLMGGLQR 178 >gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 244 Score = 35.7 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVLFYTFGVRVRP---------VFCTKIASRLTRTYTNQHGLKDNLKELLG 128 I H FD+ L + V T + +R R ++ L K L Sbjct: 87 IIHNAAFDLGFLDNELSLLGDNYGRIVERATVVDTLMMAR-ERYPGQRNSLDALCKRL-- 143 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + + + QL A D L + + T Sbjct: 144 -GVDNSHR------------QLHGALLDAQILADVYIALT 170 >gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC 17616] Length = 375 Score = 35.7 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 6/111 (5%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79 + + V T T + P + +Q G + + + AP L L + + + Sbjct: 40 IGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRDAPSFAELAPALFERL--DGKLFVA 97 Query: 80 HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 H FD L F G P V CT SR ++HGL + Sbjct: 98 HNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALFPRESRHGLDALIARH 148 >gi|167856497|ref|ZP_02479211.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755] gi|167852377|gb|EDS23677.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755] Length = 256 Score = 35.7 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 34/123 (27%) Query: 62 NAPNLVGMLVDEKRE--K----IFHYGRFDIAVLFYTFGVRVRP---------VFCT-KI 105 + P + DE E K I H FD+ + + F P V + ++ Sbjct: 76 DKPAFAEI-ADEFIEFIKGAELIIHNAPFDVGFIDHEFSFLPNPPEKVAQMCTVTDSLQL 134 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 A ++ ++ L LGI+ SK L A D L + L Sbjct: 135 ARKM--YPGKRNNLDALCDR-LGIDNSKRV--------------LHGALLDAEILADVFL 177 Query: 166 QFT 168 T Sbjct: 178 MMT 180 >gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp. JS614] Length = 405 Score = 35.7 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 37/123 (30%) Query: 25 VDTETLGLMPR-RDRL---CIVQLSP------------------------GDGTVDIIRI 56 +D ET GL P+ DR+ ++++S G D++ Sbjct: 7 IDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQRDVGPTHIHGITARDVLDA 66 Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVR-VRPVFCT-KIASRL 109 Q+ AP L+G L R + H RFD L Y F G R P CT +++S Sbjct: 67 PTFQEVAPYLIGSLA--GRTLVAHNARFDTQFLDYEFERASVGTRPPTPSLCTMQLSSSY 124 Query: 110 TRT 112 R Sbjct: 125 LRG 127 >gi|318059898|ref|ZP_07978621.1| hypothetical protein SSA3_18276 [Streptomyces sp. SA3_actG] gi|318076751|ref|ZP_07984083.1| hypothetical protein SSA3_08512 [Streptomyces sp. SA3_actF] Length = 190 Score = 35.7 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQ-SSDWSADDL 145 A+RL R +HGL + ++ G ++ +DWSA L Sbjct: 95 AARLHRVRGTRHGLAEAVRLAFGAEPEISESGGADWSARPL 135 >gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758] gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758] Length = 1535 Score = 35.7 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 24/140 (17%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVF---CTKIASR 108 +I + P + + D + H FD+ + ++ F T +R Sbjct: 548 VIDSPDIETILPQFIEFIGDA--VLVAHNASFDVGFIEQNCKRQKIEADFTYVDTVALAR 605 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + N+ L + + L I++ + A D + ++F Sbjct: 606 VLLPALNRFKLDT-VAKALNISLENHHR----------------AVDDAGCTAEIFVKFV 648 Query: 169 EKLQRLGRSDLAT-SCCNFL 187 + L+ + LA + L Sbjct: 649 QMLKERELTTLAKVNEFGDL 668 >gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1444 Score = 35.7 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 36/154 (23%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTV---------------------- 51 R + DTET GL + D+ +++L+ G V Sbjct: 421 LRDATYVIFDTETTGLSAQYDK--VIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTINLT 478 Query: 52 -DIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCT 103 + G K+ + + + + + H FD+ + + + P T Sbjct: 479 SITDDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDT 538 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +R L K+ L I + ++ Sbjct: 539 LPLARYLYPEMKGFRLNTLAKK-LNIKLEHHHRA 571 >gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius CECT 5713] Length = 1444 Score = 35.7 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 36/154 (23%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTV---------------------- 51 R + DTET GL + D+ +++L+ G V Sbjct: 421 LRDATYVIFDTETTGLSAQYDK--VIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTINLT 478 Query: 52 -DIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCT 103 + G K+ + + + + + H FD+ + + + P T Sbjct: 479 SITDDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDT 538 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +R L K+ L I + ++ Sbjct: 539 LPLARYLYPEMKGFRLNTLAKK-LNIKLEHHHRA 571 >gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium D344SRF] gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6] gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus faecium D344SRF] Length = 1452 Score = 35.7 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 32/157 (20%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGD-----------------GTV 51 A A + D ET GL D L V++ G+ TV Sbjct: 417 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 476 Query: 52 DIIRIAAGQ-----KNAPNLVGMLV-DEKREKIFHYGRFDIAVL-----FYTFGVRVRPV 100 D+ I G L L + + H FD+ L + PV Sbjct: 477 DLTGITDGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARHGIPEAANPV 536 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 T +R + GL K+ G+++ + ++ Sbjct: 537 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 572 >gi|294941548|ref|XP_002783131.1| hypothetical protein Pmar_PMAR013604 [Perkinsus marinus ATCC 50983] gi|239895524|gb|EER14927.1| hypothetical protein Pmar_PMAR013604 [Perkinsus marinus ATCC 50983] Length = 55 Score = 35.7 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 9/35 (25%), Positives = 14/35 (40%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV 51 +A+D E + R C++Q G G V Sbjct: 16 LAEAPEVAIDLEHHNMQSYRGFTCLIQRRVGAGVV 50 >gi|333027238|ref|ZP_08455302.1| putative secreted protein [Streptomyces sp. Tu6071] gi|332747090|gb|EGJ77531.1| putative secreted protein [Streptomyces sp. Tu6071] Length = 190 Score = 35.7 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQ-SSDWSADDL 145 A+RL R +HGL + ++ G ++ +DWSA L Sbjct: 95 AARLHRVRGTRHGLAEAVRLAFGAEPEISESGGADWSARPL 135 >gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] Length = 897 Score = 35.7 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 8/91 (8%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVF-CTKIASR 108 + A ++ L L DE R K H ++ + G + V T +A+ Sbjct: 351 VDPTALSVEDDAALADWLADESRPKAVH----EVKWALHALRGRGWTLTGVTSDTALAAY 406 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 L R L D L + + D Sbjct: 407 LVRPGQRTFNLDDLALRYLRRELKAEDGAGD 437 >gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003] gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003] Length = 383 Score = 35.7 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 6/98 (6%) Query: 33 MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89 P++ +Q G + AP L L + + H FD L Sbjct: 53 DPQQPIPSFIQQLTGITNAMVRGAPTFDAIAPELFARL--NGKLFVAHNASFDRGFLRGE 110 Query: 90 FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 F G+ P V CT SR +HGL ++ Sbjct: 111 FRRVGISFDPDVLCTVRLSRALFPSEKRHGLDALVERH 148 >gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118] gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118] Length = 1444 Score = 35.7 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 36/154 (23%) Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTV---------------------- 51 R + DTET GL + D+ +++L+ G V Sbjct: 421 LRDATYVIFDTETTGLSAQYDK--VIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTINLT 478 Query: 52 -DIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCT 103 + G K+ + + + + + H FD+ + + + P T Sbjct: 479 SITDDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDT 538 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +R L K+ L I + ++ Sbjct: 539 LPLARYLYPEMKGFRLNTLAKK-LNIKLEHHHRA 571 >gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2] gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2] Length = 1459 Score = 35.7 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 5/54 (9%) Query: 78 IFHYGRFDIAVLFYTF--GVRVRP---VFCTKIASRLTRTYTNQHGLKDNLKEL 126 I H +FD L F P V T IASR+ +H L+D L Sbjct: 509 IAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIASRIGFPNYKRHKLEDVTSRL 562 >gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas albilineans GPE PC73] gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas albilineans] Length = 244 Score = 35.7 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVLFYTF-------GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + H FD+ L Y G + V T + +R R ++ L K L Sbjct: 87 VIHNASFDLGFLDYELSRLGESYGCILDRASVVDTLLLAR-ERFPGQRNSLDALCKRL-- 143 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + A + QL A D L + + T Sbjct: 144 -GVDNAHR------------QLHGALLDAQILCEVYIALT 170 >gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 245 Score = 35.7 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 47/178 (26%), Gaps = 54/178 (30%) Query: 26 DTETLGLMPRRDRL---------------CIVQLS--PGDGTVDIIRIA------AGQKN 62 DTET GL R DR+ ++ + PGD V +A K+ Sbjct: 7 DTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGITDEFLKD 66 Query: 63 APNLVGM-------LVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRL 109 + D K I H FD+ + + V T +R Sbjct: 67 KKPFAEVAEEILTFFGDAK--WIAHNATFDMGFINAELARIGLPPILPERVLDTLSMARR 124 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L + I + ++ A D L + ++ Sbjct: 125 KHPMGPN-SLDALCRRY---GIDNSHRT------------KHGALLDSELLAEVYIEM 166 >gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 01V1-a] gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus iners LactinV 01V1-a] Length = 946 Score = 35.7 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552 >gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003] gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003] Length = 913 Score = 35.7 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 13/121 (10%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75 DTET L P ++ + S G + +A +AP L L ++ Sbjct: 341 DTETTSLDPMTAQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPREEVLAKLKPWLESAQQ 400 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 +K+ + ++D VL G+ +R + T + S + ++ H + + LG+ K Sbjct: 401 KKVGQHLKYDEQVLANY-GIEMRGIEHDTLLQSYVLESHRP-HDMDNLALRHLGVKTIKY 458 Query: 135 Q 135 + Sbjct: 459 E 459 >gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82] Length = 697 Score = 35.7 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 23/127 (18%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR-PVFCTKIASR 108 +I + P + + + H FD++ + G+ + T +R Sbjct: 534 VIDAPKIETILPQFME-FCGDAIM-VAHNADFDMSFIIKNCERQGIEKEFTIIDTVALAR 591 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + N+ L + + LG+++ + A D + ++F Sbjct: 592 ILLPQLNRFKLDT-VAKALGVSLENHHR----------------AVDDAGCTAEIFVKFV 634 Query: 169 EKLQRLG 175 + L G Sbjct: 635 KMLHDRG 641 >gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328] gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328] Length = 1421 Score = 35.7 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 7/89 (7%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY---TFGVRVRPVF-CTKIASRLT 110 + P + + D I H FD+ + G+ + T +R Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARAL 520 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 + H L K+ +N+ ++ D Sbjct: 521 EPHLKNHKLDTLTKKY-NVNLFNHHRACD 548 >gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna BVS033A4] gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna BVS033A4] Length = 1421 Score = 35.7 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 7/89 (7%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY---TFGVRVRPVF-CTKIASRLT 110 + P + + D I H FD+ + G+ + T +R Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARAL 520 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 + H L K+ +N+ ++ D Sbjct: 521 EPHLKNHKLDTLTKKY-NVNLFNHHRACD 548 >gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12] gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12] Length = 242 Score = 35.7 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 25/102 (24%) Query: 76 EKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 E + H FDI+ + + FG+ + + T ++ ++ L K Sbjct: 97 EVVAHNASFDISFMDHEFGLLRPKGPKTADICGILDTLAIAKYLHP-GQKNNLDALCKRY 155 Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 GI D S +L A D L + L T Sbjct: 156 -GI---------DNSRREL-----HGALLDAEILADVYLLMT 182 >gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34] gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34] gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1464 Score = 35.7 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 40/148 (27%), Gaps = 35/148 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNL 66 P + + D ET GL + ++Q++ G+ + Sbjct: 416 PQDIELNEATYVVFDVETTGLSAVNNE--LIQIAASKMYKGNIVEQFDEFINPGHHLSAF 473 Query: 67 ---------------------VGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98 + M D + + H FD+ + + + + Sbjct: 474 TTELTGITDNHVRNAKPIEEVLQMFQDFCQDTVLVAHNATFDVGFMNANYERHGMPIITQ 533 Query: 99 PVFCTKIASRLTRTYTNQHGLKDNLKEL 126 PV T +R +HGL K Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRF 561 >gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42] gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42] Length = 1433 Score = 35.7 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 8/90 (8%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-----RVRPVFCTKIAS 107 +I + + D + H FD+ + F PV T + Sbjct: 477 LIDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELA 534 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQS 137 R H L K++ I +++ ++ Sbjct: 535 RFLFPEMKNHRLNTLCKKM-DIELTQHHRA 563 >gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2] Length = 579 Score = 35.7 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 39/143 (27%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGR-FDIAVLFYTFGVRV--RPVFCTKIASRLTR 111 + + +L D + ++H G FD +L + + V T + + L Sbjct: 46 DVTQDKTMPADLKAYFDDSEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQA-LAH 104 Query: 112 TYTNQHGLKDNLKELLGINISKA----------------------QQSSDWSADDLS--D 147 GL L ++ +N KA Q+++ L+ + Sbjct: 105 GLPGALGL---LCDIFNVNSDKAKDKEGKALISLLCKPRPKNSKIQRAT-----ALTHAE 156 Query: 148 EQ---LQYAASDVVHLHALRLQF 167 E YA SD++ + + Sbjct: 157 EWQRFKDYAGSDILAMREIYQHL 179 >gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1410 Score = 35.7 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 9/90 (10%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLT 110 R + P + + + + H FD+ + G+ V PV T SR Sbjct: 460 RYPPIDEVLPKFLEFI--KGSTLVAHNANFDVTFIKTKAKNLGIEVDNPVLDTLELSR-- 515 Query: 111 RTYTNQHGLK-DNLKELLGINISKAQQSSD 139 Y N K D + + LG+++ ++ D Sbjct: 516 HMYENLKNYKLDTVAQHLGVSLENHHRAVD 545 >gi|255928521|gb|ACU42136.1| gp59 [Mycobacterium phage UncleHowie] Length = 619 Score = 35.7 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 A+A D ET GL C+ Q G ++ +++A LV + Sbjct: 51 ALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHA-ALVAEMYALAGPV 109 Query: 78 IFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHG----LKDNLKELLGI 129 I H FDI LF+ V + + T + +R +G L LG+ Sbjct: 110 ILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYLGL 169 Query: 130 N 130 + Sbjct: 170 S 170 >gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3] gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU 1054] gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia HI2424] gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia PC184] gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia MC0-3] Length = 375 Score = 35.7 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 6/89 (6%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR 98 +Q G + AP L L + + + H FD L F G+ Sbjct: 62 IQQLTGISDAMVRDAPTFASLAPALFERL--DGKLFVAHNASFDRGFLRAEFERAGLAFN 119 Query: 99 P-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 P V CT SR ++HGL ++ Sbjct: 120 PDVLCTVRLSRALFPRESRHGLDALIERH 148 >gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna ACS-171-V-Col3] gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia magna ACS-171-V-Col3] Length = 1421 Score = 35.7 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 7/89 (7%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY---TFGVRVRPVF-CTKIASRLT 110 + P + + D I H FD+ + G+ + T +R Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARAL 520 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 ++ H L K+ +N+ ++ D Sbjct: 521 ESHLKNHKLDTLTKKY-NVNLFNHHRACD 548 >gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII] gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII] Length = 256 Score = 35.7 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 56/186 (30%) Query: 23 IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56 I +DTET G L + CI+++ D VD I Sbjct: 8 IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67 Query: 57 -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102 + P + D E + H FD+ + Y F V Sbjct: 68 TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T +R ++ L LGI+ SK L A D L Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171 Query: 163 LRLQFT 168 + L T Sbjct: 172 VYLMMT 177 >gi|302518938|ref|ZP_07271280.1| secreted protein [Streptomyces sp. SPB78] gi|302427833|gb|EFK99648.1| secreted protein [Streptomyces sp. SPB78] Length = 174 Score = 35.7 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQ-SSDWSADDL 145 A+RL R +HGL + ++ G ++ +DWSA L Sbjct: 79 AARLHRVRGTRHGLAEAVRLAFGAEAEISESGGADWSARPL 119 >gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37] Length = 239 Score = 35.7 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVL---FYTFGVRVRP------VFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + H FD+ + F R +P + T + +R + L +EL Sbjct: 97 VIHNAPFDVGFMDQEFRFLNKRTKPTAEISTITDTLVMARK-MYPGKRASLDALCREL-- 153 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 I + L A D L + L T Sbjct: 154 -GIDNKHRV------------LHGALLDAEILADVYLLMT 180 >gi|255927583|gb|ACU41205.1| gp59 [Mycobacterium phage Colbert] Length = 619 Score = 35.7 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 A+A D ET GL C+ Q G ++ +++A LV + Sbjct: 51 ALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHA-ALVAEMYALAGPV 109 Query: 78 IFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHG----LKDNLKELLGI 129 I H FDI LF+ V + + T + +R +G L LG+ Sbjct: 110 ILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYLGL 169 Query: 130 N 130 + Sbjct: 170 S 170 >gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158] gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158] Length = 375 Score = 35.7 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 47/146 (32%), Gaps = 26/146 (17%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR 98 +Q G + + AP L L + + + H FD L F G Sbjct: 62 IQQLTGISDAMVRDAPSFASLAPALFERL--DGKLFVAHNASFDRGFLRAEFERAGYAFN 119 Query: 99 P-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 P V CT SR +HGL ++ G+ S + A +D Sbjct: 120 PDVLCTVRLSRALFPREARHGLDALIERH-GLVPSARHR----------------ALADA 162 Query: 158 VHLHALRLQFTEK--LQRLGRSDLAT 181 L Q E L+RL R +A Sbjct: 163 DLLWQFWRQLHEIVPLERL-RDQIAR 187 >gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908] gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908] Length = 242 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + H FD++ + + F + + P+ T ++ ++ L K G Sbjct: 99 VAHNANFDVSFMDHEFSLLQPVGPKTADICPILDTLEIAKFLHP-GQKNNLDALCKRY-G 156 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 I D S DL A D L + L T Sbjct: 157 I---------DNSRRDL-----HGALLDAEILADVYLMMT 182 >gi|238609930|ref|XP_002397596.1| hypothetical protein MPER_01947 [Moniliophthora perniciosa FA553] gi|215472406|gb|EEB98526.1| hypothetical protein MPER_01947 [Moniliophthora perniciosa FA553] Length = 141 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194 ++W + +E ++YA SD L + L RS + N + +D Sbjct: 19 TNWRIGEY-EEMVEYARSDTHFLLYIYDSLRNALLDRARSQSTSGDMNMAASSSNVD 74 >gi|255928280|gb|ACU41897.1| gp60 [Mycobacterium phage Puhltonio] Length = 619 Score = 35.4 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 A+A D ET GL C+ Q G ++ +++A LV + Sbjct: 51 ALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHA-ALVAEMYALAGPV 109 Query: 78 IFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHG----LKDNLKELLGI 129 I H FDI LF+ V + + T + +R +G L LG+ Sbjct: 110 ILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYLGL 169 Query: 130 N 130 + Sbjct: 170 S 170 >gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA] gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA] Length = 1442 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 78 IFHYGRFDIAVLF---YTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H FD + G+ + T +R + L + + + LG+++ Sbjct: 511 VAHNAAFDTGFIKKNCNDLGLEFNSTIVDTVPLARFLYPELKRVKL-NLVAKHLGVSLEN 569 Query: 134 AQQSSD 139 ++ D Sbjct: 570 HHRAVD 575 >gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400] Length = 395 Score = 35.4 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%) Query: 33 MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89 P++ +Q G + + AP L L + + H FD L Sbjct: 65 DPQQPIPSFIQQLTGITNAMVRGAPTFEAIAPALFERL--NGKLFVAHNASFDRGFLRGE 122 Query: 90 FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 F G+ P V CT SR +HGL ++ + + + +D Sbjct: 123 FRRAGLAFDPDVLCTVRLSRALFPAEKRHGLDALVERHTLVPSDRHRALAD 173 >gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198] gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198] Length = 250 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 27/100 (27%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVLFYTF-----GVRVRPVFCTKI----ASRLTRTYTNQHGLKDNLKELLG 128 I H FDI + Y F + FC +I A ++ L L Sbjct: 96 IIHNASFDIGFMDYEFRKLNRDIPPTETFC-QITDSLAMARALFPGKRNNLDALCDRYL- 153 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 D S L A D L + L T Sbjct: 154 ---------IDNSKRTL-----HGALLDAEILSDVYLAMT 179 >gi|38638464|ref|NP_943839.1| gp61 [Mycobacterium phage PG1] gi|109391908|ref|YP_655158.1| gp62 [Mycobacterium phage Orion] gi|206600352|ref|YP_002241372.1| gp62 [Mycobacterium phage Chah] gi|33334079|gb|AAQ12138.1| gp61 [Mycobacterium phage PG1] gi|88910450|gb|ABD58378.1| gp62 [Mycobacterium phage Orion] gi|206287440|gb|ACI12782.1| gp62 [Mycobacterium phage Chah] gi|282721440|gb|ADA83888.1| gp62 [Mycobacterium phage Fang] gi|282721543|gb|ADA83990.1| gp61 [Mycobacterium phage Scoot17C] Length = 619 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 22 AIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77 A+A D ET GL C+ Q G ++ +++A LV + Sbjct: 51 ALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHA-ALVAEMYALAGPV 109 Query: 78 IFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHG----LKDNLKELLGI 129 I H FDI LF+ V + + T + +R +G L LG+ Sbjct: 110 ILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYLGL 169 Query: 130 N 130 + Sbjct: 170 S 170 >gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4] gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4] Length = 917 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 13/123 (10%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P RL + S G + +A + P L L Sbjct: 343 AFDTETTSLDPMTARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDDVLARLKPWLEAA 402 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 R+K+ + ++D VL + + + T + S + ++ H + LG+ Sbjct: 403 DRKKVGQHLKYDAQVLANY-DIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 460 Query: 133 KAQ 135 K + Sbjct: 461 KYE 463 >gi|12321950|gb|AAG51007.1|AC069474_6 hypothetical protein; 73797-74486 [Arabidopsis thaliana] Length = 171 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 111 RTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 R + ++E LG + + + SDWSA +L D+Q+ A+ D L Sbjct: 107 RRSMRGCSFEVIVEECLGYRGVRLDREISMSDWSAYELCDDQILQASIDAHVCFKL 162 >gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544] gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544] Length = 878 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 26/131 (19%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYT 114 + P L+ +L EK+ +F R+D GVR + F ++A+ L Sbjct: 368 VPKDSAAFPALLSLLESEKQVAVFGLKRYD------QAGVRGQNDFFDIELAAYLLEPER 421 Query: 115 NQHGLKDNLKELLGINISKAQ----QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170 +++ L + ++ L ++ + W A +S L K Sbjct: 422 SKYALPELSQKYLQEMAPESFADERSRAVWEAKTIS---------------RLYPLLGAK 466 Query: 171 LQRLGRSDLAT 181 L+ + L Sbjct: 467 LEEEELTHLMK 477 >gi|219871037|ref|YP_002475412.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165] gi|219691241|gb|ACL32464.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165] Length = 256 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 34/123 (27%) Query: 62 NAPNLVGMLVDEKRE--K----IFHYGRFDIAVLFYTFGVRVRP---------VFCT-KI 105 + P + DE E K I H FD+ + + F P V + ++ Sbjct: 76 DKPAFAEI-ADEFIEFIKGAELIIHNAPFDVGFIDHEFSFLPNPPEKVAQMCTVTDSLQL 134 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165 A ++ ++ L LGI+ SK L A D L + L Sbjct: 135 ARKM--YPGKRNNLDALCDR-LGIDNSKRV--------------LHGALLDAEILADVFL 177 Query: 166 QFT 168 T Sbjct: 178 MMT 180 >gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1464 Score = 35.4 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 7/66 (10%) Query: 68 GMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120 M D + + H FD+ + + + +PV T +R +HGL Sbjct: 496 QMFQDFCQDTVLVAHNATFDVGFMNANYERHGMPIITQPVIDTLEFARNLYPEYKRHGLG 555 Query: 121 DNLKEL 126 K Sbjct: 556 PLTKRF 561 >gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3] gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3] Length = 919 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 13/121 (10%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75 DTET L P ++ + LS G+ I +A +AP L L +R Sbjct: 347 DTETTSLDPMVAQIVGISLSTEPGSAAYIPVAHRGPDAPEQLPRDEVLAKLKPWLESAER 406 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 K+ + ++D VL + + + T + S + ++ H + LG+ K Sbjct: 407 RKVGQHLKYDAQVLANY-EIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKY 464 Query: 135 Q 135 + Sbjct: 465 E 465 >gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363] gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp. cremoris MG1363] gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000] Length = 1635 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 61 KNAPNLVGMLV-----DEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLT 110 KNA L +L E + H FD+ + + +PV T +R Sbjct: 653 KNAKPLYEVLTKFQKFCEGTILVAHNASFDVGFMNMNYSRNGLPIISQPVVDTLEFARNL 712 Query: 111 RTYTNQHGLKDNLKEL 126 + GL K+ Sbjct: 713 YPEMKRFGLGQLTKKF 728 >gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11] gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis subsp. cremoris SK11] Length = 1635 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 61 KNAPNLVGMLV-----DEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLT 110 KNA L +L E + H FD+ + + +PV T +R Sbjct: 653 KNAKPLYEVLTKFQKFCEGTILVAHNASFDVGFMNMNYSRNGLPIISQPVVDTLEFARNL 712 Query: 111 RTYTNQHGLKDNLKEL 126 + GL K+ Sbjct: 713 YPEMKRFGLGQLTKKF 728 >gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338] gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338] Length = 1464 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 5/59 (8%) Query: 73 EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + + H FD+ + + + +PV T +R +HGL K Sbjct: 503 QDTVLVAHNATFDVGFMNANYERHGMPIITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 561 >gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 239 Score = 35.4 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 26/101 (25%) Query: 78 IFHYGRFDIAVLFYTFGVRVRP----------VFCTKIASRLTRTYTNQHGLKDNLKELL 127 + H FD+ + + FG+ V T +R ++ L K Sbjct: 87 VIHNAPFDVGFMDHEFGMEPSTKGVITNQICDVLDTLTLAR-QMHPGQKNNLDALCKRY- 144 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 I + ++ L A D L + L T Sbjct: 145 --GIDNSHRT------------LHGALLDAEILADVYLLMT 171 >gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] Length = 885 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYT 114 I + N NL + D+ EK+ + + DI VL Y + ++ + IA L + Sbjct: 354 IDYNKDNLSNLKALWEDDSIEKLGYDLKEDIIVLQYN-KIDLKNYCHDSMIAEYLLNSTE 412 Query: 115 NQHGLKDNLKELLG 128 + + + Sbjct: 413 SNYEIDHLASSYFN 426 >gi|32442293|gb|AAP82217.1| DNA polymerase [Podovirus SOG] Length = 400 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 6/72 (8%) Query: 102 CTKIASRLTRTYTNQ-HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 T + S L H LK + + + K W + + E L Y DV L Sbjct: 1 DTLVLSSLANPSLEGGHSLKAWGERIHNL---KGDYEGGW--ETFNPEMLAYCQQDVRLL 55 Query: 161 HALRLQFTEKLQ 172 L + +L+ Sbjct: 56 KDLYRRLEVQLE 67 >gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 515] gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 515] Length = 1036 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD+ + + + +PV T +R +HGL K Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565 >gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 885 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYT 114 I + N NL + D+ EK+ + + DI VL Y + ++ + IA L + Sbjct: 354 IDYNKDNLSNLKALWEDDSIEKLGYDLKEDIIVLQYN-KIDLKNYCHDSMIAEYLLNSTE 412 Query: 115 NQHGLKDNLKELLG 128 + + + Sbjct: 413 SNYEIDHLASSYFN 426 >gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae CJB111] Length = 1468 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD+ + + + +PV T +R +HGL K Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565 >gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R] gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316] gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 18RS21] gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 2603V/R] gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae NEM316] gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae 18RS21] Length = 1468 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD+ + + + +PV T +R +HGL K Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565 >gi|119194125|ref|XP_001247666.1| hypothetical protein CIMG_01437 [Coccidioides immitis RS] Length = 752 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 47/159 (29%), Gaps = 37/159 (23%) Query: 6 VHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-- 60 V E DI +A+D E T G + R+ +V DG V + + Q Sbjct: 330 VPEKDIQGGSLTAGRQVLALDCEMCITEGGVSELARISLV---GWDGEVVLDELVKPQRP 386 Query: 61 --------------------KNAPNLVGMLVD---EKREKIFHYGRFDIAVLFYTFGVRV 97 ++ L+D + + H D+ L Sbjct: 387 VIDYLTQYSGMTKEKLDPVTTTLSDVQKKLLDILHPRTILVGHSLNSDLTALK-----LT 441 Query: 98 RP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135 P + T I R + LK ++ L I K Q Sbjct: 442 HPYIIDTAIIYPHPRGPPLKSSLKWLAQKYLSREIQKGQ 480 >gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae COH1] gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae COH1] Length = 1468 Score = 35.4 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD+ + + + +PV T +R +HGL K Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565 >gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813] Length = 1468 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD+ + + + +PV T +R +HGL K Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565 >gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM 14237] gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM 14237] Length = 456 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 7/70 (10%) Query: 73 EKREKIFHYGRFDIAVLFYTFGVRVRPV----FCT-KIASRLTRTYTNQHGLKDNLKELL 127 E I H +FD +L F CT ++A +L + L ++ L Sbjct: 79 EGTVLIAHNAQFDYRILRTEFRRLGFNFERKTICTVELAQKLL-PEAESYSLGKLVRS-L 136 Query: 128 GINISKAQQS 137 GI +S ++ Sbjct: 137 GIPVSDRHRA 146 >gi|15795164|dbj|BAB03152.1| unnamed protein product [Arabidopsis thaliana] Length = 210 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 111 RTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 R + ++E LG + + + SDWSA +L D+Q+ A+ D L Sbjct: 146 RRSMRGCSFEVIVEECLGYRGVRLDREISMSDWSAYELCDDQILQASIDAHVCFKL 201 >gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae H36B] gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae H36B] Length = 1468 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD+ + + + +PV T +R +HGL K Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565 >gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183] gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175] Length = 242 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 29/102 (28%) Query: 78 IFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + H FD++ + + F + + + T + ++ ++ L K G Sbjct: 99 VAHNANFDVSFMDHEFSLLQPRGPKTADICQILDTLVIAKFLHP-GQKNNLDALCKRY-G 156 Query: 129 INISKAQQSSDWSADDLSDEQLQY--AASDVVHLHALRLQFT 168 + D S +Y A D L + L T Sbjct: 157 V---------DTSRR-------EYHGALLDAEILADVYLIMT 182 >gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270] gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270] Length = 1431 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 78 IFHYGRFDIAVLF---YTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133 + H FDI+ + + P F T +R + H L KE LG+N+ Sbjct: 499 VAHNAEFDISFIKTNCKRLNLEFNPTFIDTMGFARAILPHLKNHKLNTLCKE-LGVNLLN 557 Query: 134 AQQSS 138 ++S Sbjct: 558 HHRAS 562 >gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN] gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN] Length = 913 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 13/121 (10%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGMLVDEKR 75 DTET L P ++ + LS G + +A +AP L L + Sbjct: 341 DTETTSLDPMTAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVLARLKPWLESAEH 400 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 +K+ + ++D VL G+ +R + T + S + ++ H + LG+ K Sbjct: 401 KKVGQHLKYDEQVLANY-GIEMRGIEHDTLLQSYVVESHRT-HDMDSLALRHLGVKTIKY 458 Query: 135 Q 135 + Sbjct: 459 E 459 >gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine proteobacterium] Length = 231 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 26/112 (23%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP------VFCTK-IASRLTRTYTN 115 A + + D K + H FD+ L G RP T IA R + + Sbjct: 74 AQEFIDFIADSKL--VIHNASFDMKFLNAELGWVNRPALPNDQTIDTLAIARR--KFPGS 129 Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 L + I + ++ L A D L + L+ Sbjct: 130 PASLDALCRRF---GIDNSSRT------------LHGALLDSEILAEVYLEL 166 >gi|71907224|ref|YP_284811.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Dechloromonas aromatica RCB] gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Dechloromonas aromatica RCB] Length = 238 Score = 35.4 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 51/186 (27%), Gaps = 58/186 (31%) Query: 23 IAVDTETLGLMPRRDRLCIVQLS-------------------------PGDGTVDIIRIA 57 I +DTET GL PR I++++ G V I + Sbjct: 4 IVLDTETTGLDPRSGH-RIIEVACIEMVNRRFTGHHLHKYINPEREIDEGAQAVHGITL- 61 Query: 58 AGQKNAPNLVGMLVDE------KREKIFHYGRFDIAVLFYTF--------GVRVRPVFCT 103 + P + DE E I H FDI L G V T Sbjct: 62 EFLADKPKFADI-ADEFLEFINGAELIIHNAPFDIGFLNAELDRLGRVPVGTICNGVIDT 120 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 ++ ++ L + I + ++ L A D L + Sbjct: 121 LRMAKELHP-GKRNSLDALCERY---EIDNSSRT------------LHGALLDTELLADV 164 Query: 164 RLQFTE 169 L T Sbjct: 165 FLAMTR 170 >gi|321450988|gb|EFX62799.1| hypothetical protein DAPPUDRAFT_269697 [Daphnia pulex] Length = 256 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 5/23 (21%), Positives = 10/23 (43%) Query: 149 QLQYAASDVVHLHALRLQFTEKL 171 + YA D +L + + + L Sbjct: 1 MVNYAREDTHYLIYIYERLKQDL 23 >gi|162449983|ref|YP_001612350.1| exonuclease [Sorangium cellulosum 'So ce 56'] gi|161160565|emb|CAN91870.1| exonuclease [Sorangium cellulosum 'So ce 56'] Length = 298 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 58/195 (29%), Gaps = 55/195 (28%) Query: 20 VDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAG------------ 59 + +D E GL P DR ++++ D ++R G Sbjct: 31 APLVFLDLEMTGLRPESDR--VIEVCAERTRGDACEDAITSLVRPEPGVFGNAHVHGIDP 88 Query: 60 --QKNAPNLVGML-----VDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIA 106 AP + V E + H +D+A L + T + Sbjct: 89 RELAGAPTFAELCDRIDQVTEGAVLVAHAAAWDVAFLEAELARAGRARRLPHYL-DTLVL 147 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 SR H L +E LG++ +A ++ D DV L A+ + Sbjct: 148 SRRAFA-LPSHSLASLCRE-LGVHRERAHRAED----------------DVHALRAVFRK 189 Query: 167 FTEKLQ-RLGRSDLA 180 E L R R Sbjct: 190 IVEVLAPRTPRDLWH 204 >gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 206 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 15/109 (13%) Query: 46 PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-----V 100 G +I + P + L D + H +FDI+ L + + Sbjct: 65 TGITNAMVIDKPYFEDIYPEVYNFLKDS--IVVAHNAKFDISFLSEVHKIVFKNNLRLHY 122 Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149 CT +R + L LGIN + LSD Q Sbjct: 123 ICTDNLARRIFPEIQKKSLSSLTN-YLGINFKQKH-------RALSDAQ 163 >gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909] gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus agalactiae A909] Length = 1468 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 78 IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD+ + + + +PV T +R +HGL K Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565 >gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196] gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196] Length = 1433 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVL---FYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F G+ PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGIEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621] gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621] Length = 1433 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVL---FYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F G+ PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGIEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|303286277|ref|XP_003062428.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455945|gb|EEH53247.1| predicted protein [Micromonas pusilla CCMP1545] Length = 186 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 48/159 (30%), Gaps = 43/159 (27%) Query: 20 VDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRI------------------AAG 59 D IA+D E +G RR L V + DG V + A Sbjct: 10 TDVIALDCEMVGVGEDGRRSILARVSVVNEDGNVVLDTFVAPTEHVTDYRTAVSGVRAQD 69 Query: 60 QKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT----------- 103 + AP + + D R + H + D+ L R T Sbjct: 70 LRGAPPFKEIQRKMADILRGRILVGHALKNDLRALLLDHPRRATR--DTATYRPLTRPLR 127 Query: 104 ----KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138 A + R ++ LK+ LG+ I + SS Sbjct: 128 SRERAQADGIARGRGSR-SLKELCARELGLEIQAGEHSS 165 >gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10] gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10] Length = 1433 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 17/100 (17%) Query: 53 IIRIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVL---FYTFGVR--V 97 II + + AP + +L D + H FD+A L + G+ Sbjct: 467 IIDLTGITDDMVADAPEIHDVLKDFKAWCGNDIL-VAHNAAFDMAFLDAGYQKAGMDKAA 525 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 PV T R+ + L K+ I + ++ Sbjct: 526 NPVIDTLEMGRMLYPTFKNYRLNTLCKKF-NIELVSHHRA 564 >gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] Length = 661 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 6/85 (7%) Query: 52 DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG--VRVRPVFCTKIASRL 109 +A +++ P+ L K + F+ L G + CT + + Sbjct: 48 LTDPLADPERDFPDFWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAAT 107 Query: 110 TRTYTNQHGLKDNLKELLGINISKA 134 G + E LG+ K Sbjct: 108 LGLPGTLGG----VGEALGLPEDKQ 128 >gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4] gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4] Length = 1433 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVL---FYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F G+ PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGIEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|302840032|ref|XP_002951572.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f. nagariensis] gi|300263181|gb|EFJ47383.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f. nagariensis] Length = 1461 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT-- 110 +R+ DE +K++H FD VL G+ T +RL Sbjct: 748 VRLKPHHPILDEFKRFFEDESVKKVWHNYGFDRHVLEN-MGICCAGFGGDTLHMARLADA 806 Query: 111 -RTYTNQHGLKDNLKEL 126 R+ +GL + + Sbjct: 807 SRSGRRTYGLDNLTADH 823 >gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM 44385] Length = 616 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 43/155 (27%), Gaps = 36/155 (23%) Query: 6 VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGT------VDI--- 53 DI + VD ET GL DR+ V++ G+ VD Sbjct: 19 TFNQDIADSLIVNTT-FVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISRFSTFVDPGRL 77 Query: 54 -------------IRIAAGQKNAPNLVGMLV-DEKREKIFHYGRFDIAVLF------YTF 93 + K A + L + H RFDI L + Sbjct: 78 IPPLITNITGISDDDVNGAPKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHIT 137 Query: 94 GVRVRPVFCTKIASR--LTRTYTNQHGLKDNLKEL 126 + + CT + +R L R L + Sbjct: 138 WPQPTHL-CTLVLARTMLDRCAVGSFKLSSLARHF 171 >gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814] gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814] Length = 1513 Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 23/133 (17%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVF---CTKIASR 108 +I + P + + D + H FD++ + + ++P F T +R Sbjct: 529 VIGAPDIETVLPQFLEFIGDAAL--VAHNASFDVSFIEQNCRYQDIQPDFTSVDTVAMAR 586 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + +++ L + + L I++ + A D + ++F Sbjct: 587 ILLPTLSKYKL-NVVANALHISLENHHR----------------AVDDAGATAEIFVKFV 629 Query: 169 EKLQRLGRSDLAT 181 E L+ G DLA Sbjct: 630 EMLKDRGIYDLAK 642 >gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048] gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048] Length = 1435 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVL---FYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F G+ PV T +R H L K+ L I ++ Sbjct: 502 VAHNASFDMGFINVGFKKAGIEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 560 Query: 133 KAQQS 137 + ++ Sbjct: 561 QHHRA 565 >gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1] gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10] gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga petrophila RKU-1] gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10] Length = 1367 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 27/127 (21%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTK-IASRLTRTYTNQ 116 P +G L + + H FD L + RP T +A L + Sbjct: 427 LPEFLGFLENSII--VAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKM--RS 482 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + L +++ LG+ + + A D + L+F E ++++G Sbjct: 483 YSLDSVVEK-LGLGPFRHHR----------------ALDDARVTAQVFLRFVEMMKKIGI 525 Query: 177 SDLATSC 183 + L+ Sbjct: 526 TKLSEIE 532 >gi|332983347|ref|YP_004464788.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON] gi|332701025|gb|AEE97966.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON] Length = 657 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 16/94 (17%) Query: 45 SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-------- 96 D V +I +A+G+ ++ L DE K H +F+ L + Sbjct: 38 CADDDEVRVIDLASGEALPTEVLDALTDETVVKWAHNAQFERVCLSRWLERQGINLKALN 97 Query: 97 -------VRPVFCTKIASRLTRTYTNQHGLKDNL 123 CT + S + G + Sbjct: 98 GNSNFLNPASWRCTMVWSAYLGLPLSLEG-AALV 130 >gi|302498660|ref|XP_003011327.1| hypothetical protein ARB_02385 [Arthroderma benhamiae CBS 112371] gi|291174877|gb|EFE30687.1| hypothetical protein ARB_02385 [Arthroderma benhamiae CBS 112371] Length = 734 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 47/163 (28%), Gaps = 37/163 (22%) Query: 6 VHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQ----------LSPGDGTVD 52 V + DI D A+D E T G R+ +V + P + +D Sbjct: 340 VPDRDIAEGSVTAGRDIFALDCEMCITEGGKSELTRISLVSWDGERVLDEFVKPENPIID 399 Query: 53 ------------IIRIAAGQKN-APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99 + + + L+ +L I H D+ L P Sbjct: 400 YLTRFSGVTKEKLDPVTTNLSDIQQKLLRILTPRSIL-IGHSLNSDLNALK-----LTHP 453 Query: 100 -VFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSD 139 + T AS R + LK + LG I K D Sbjct: 454 FIVDT--ASIYPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHD 494 >gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ] gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ] Length = 244 Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 24/127 (18%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIA 106 +I + + A L+ L D + H RFD+ L + T Sbjct: 66 LIGMPKFAEVADELLDFLQDSAL--VIHNARFDMRFLEVEIERLSNKRAITNTIVDTLEM 123 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 +R + L K NIS ++ A D L + ++ Sbjct: 124 ARK-KFPGMPASLDALCKRF---NISTQERK------------FHGALKDATLLARVYVE 167 Query: 167 FTEKLQR 173 E LQR Sbjct: 168 LLEALQR 174 >gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum WAL-14163] gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum WAL-14163] gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 1511 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 7/91 (7%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRVRP-VFCTKIASR 108 ++ + P + + H FDI+ + G+ P V T +R Sbjct: 545 VLDAPKIDRVLPEFLEF--CRGAVMVAHNAGFDISFIKENARQQGLEFNPTVLDTVSLAR 602 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 + N+ L KE L IN++ ++ D Sbjct: 603 VLLPNLNRFKLDTVAKE-LKINLANHHRAVD 632 >gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 1438 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 11/89 (12%) Query: 61 KNAPNLVGMLV-----DEKREKIFHYGRFDIAVL---FYTFG--VRVRPVFCTKIASRLT 110 K+AP++ +L E + H RFD + G + PV T +R+ Sbjct: 481 KDAPDVEPVLKRFVEFAEDAILVAHNARFDYDFVNAKLKELGLPIMENPVLDTLELARML 540 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 H L + +++ ++ D Sbjct: 541 FPTMKNHRLNTLAAKY-KVSLENHHRAID 568 >gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2] gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2] Length = 1367 Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 27/127 (21%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTK-IASRLTRTYTNQ 116 P +G L + + H FD L + RP T +A L + Sbjct: 427 LPEFLGFLENSII--VAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKM--RS 482 Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176 + L +++ LG+ + + A D + L+F E ++++G Sbjct: 483 YSLDSVVEK-LGLGPFRHHR----------------ALDDARVTAQVFLRFVEMMKKIGI 525 Query: 177 SDLATSC 183 + L+ Sbjct: 526 TKLSEIE 532 >gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273] gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272] gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272] gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273] Length = 1433 Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155] gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155] Length = 242 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 29/102 (28%) Query: 78 IFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + H FD++ + + F + + + T + ++ ++ L K G Sbjct: 99 VAHNANFDVSFMDHEFSLLQPRGPKTADICQILDTLVIAKFLHP-GQKNNLDALCKRY-G 156 Query: 129 INISKAQQSSDWSADDLSDEQLQY--AASDVVHLHALRLQFT 168 + D S +Y A D L + L T Sbjct: 157 V---------DTSRR-------EYHGALLDAEILADVYLIMT 182 >gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64] gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64] Length = 1461 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%) Query: 80 HYGRFDIAVL---FYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 H RFD L F + V T I SR+ +H L+D + +G+ Sbjct: 512 HNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQNKKHKLED-VATRVGVEYD-- 568 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + Y D L + + ++L + G Sbjct: 569 ---------PTVAHRGDY---DAKVLAEVWVALMDELGKKG 597 >gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER] gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER] Length = 1461 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%) Query: 80 HYGRFDIAVL---FYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 H RFD L F + V T I SR+ +H L+D + +G+ Sbjct: 512 HNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQNKKHKLED-VATRVGVEYD-- 568 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + Y D L + + ++L + G Sbjct: 569 ---------PTVAHRGDY---DAKVLAEVWVALMDELGKKG 597 >gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 1467 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%) Query: 80 HYGRFDIAVL---FYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 H RFD L F + V T I SR+ +H L+D + +G+ Sbjct: 518 HNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQNKKHKLED-VATRVGVEYD-- 574 Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175 + Y D L + + ++L + G Sbjct: 575 ---------PTVAHRGDY---DAKVLAEVWVALMDELGKKG 603 >gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5] gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5] Length = 917 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 13/123 (10%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P RL + S G + +A + P L L Sbjct: 343 AFDTETTALDPMTARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVLARLRPWLESA 402 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 R+K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 403 DRKKVGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 460 Query: 133 KAQ 135 K + Sbjct: 461 KYE 463 >gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD] gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD] Length = 917 Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 13/123 (10%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P RL + S G + +A + P L L Sbjct: 343 AFDTETTALDPMTARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVLARLRPWLESA 402 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 R+K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 403 DRKKVGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 460 Query: 133 KAQ 135 K + Sbjct: 461 KYE 463 >gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum SL003B-26A1] gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum SL003B-26A1] Length = 719 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 58/196 (29%), Gaps = 56/196 (28%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-------------SPGDGTVDI-IRIA 57 A +D + +DTET GL R DR+ VQ+ + + TVD I I Sbjct: 10 SAAAPLIALDVVVLDTETTGLDVRHDRI--VQIGAVRMHGAEIDETAVFEVTVDPGIPIP 67 Query: 58 A------GQKNA-----PNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF------GV 95 G +A P L ++ D + H FD+AVL + Sbjct: 68 EVASRIHGLADADVAGKPGLAAVMPDLVAFIGDAVVVGHSIHFDMAVLRHEAERHGFVWK 127 Query: 96 RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155 R + + + L LG+ I+ A Sbjct: 128 EPRAL-DVALMAAGLDRELVDTSLDSLALG-LGVTITGRHT----------------ALG 169 Query: 156 DVVHLHALRLQFTEKL 171 D + + KL Sbjct: 170 DALATARVYAALQPKL 185 >gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens AM1] gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium extorquens AM1] Length = 297 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 38/140 (27%) Query: 21 DAIAVDTETLGLMPRRDRLC------------------IV---QL--SPGDGTVDIIRIA 57 +A+D ET RD C ++ QL SPG+ V I + Sbjct: 2 KVVAIDFETANER--RDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGI-LP 58 Query: 58 AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT-KIA 106 A ++AP ++ + + H FD+ VL + PV CT +IA Sbjct: 59 ADVRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIA 118 Query: 107 SRLTRTYTNQHGLKDNLKEL 126 R+ HGL L Sbjct: 119 RRVFPD-PAGHGLAKVASRL 137 >gi|183231979|ref|XP_651188.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|169802250|gb|EAL45800.2| hypothetical protein EHI_064630 [Entamoeba histolytica HM-1:IMSS] Length = 536 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 12/140 (8%) Query: 35 RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94 R LCI+ ++ V ++ I +++ + EK+ + F I L+Y F Sbjct: 182 YRGYLCILFVAF-SHFVYVLDILKLKESFETTSLLFESTSIEKVCYKA-FGIRALYYQFK 239 Query: 95 VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 + VF +A + + D K + I + + +W S + + Sbjct: 240 ITTNNVFLLDVA---CQKMNICYNYADLFKTMTD-RIP--ETNDEWMIRPYSKYVICWFG 293 Query: 155 SDVVHLH----ALRLQFTEK 170 D + L +R + E+ Sbjct: 294 LDTLQLLNFSIKIRNKLIEQ 313 >gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185] gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195] gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223] gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185] gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195] gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223] gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678] Length = 242 Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 29/102 (28%) Query: 78 IFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + H FD++ + + F + + + T + ++ ++ L K G Sbjct: 99 VAHNANFDVSFMDHEFSLLQPRGPKTADICQILDTLVIAKFLHP-GQKNNLDALCKRY-G 156 Query: 129 INISKAQQSSDWSADDLSDEQLQY--AASDVVHLHALRLQFT 168 + D S +Y A D L + L T Sbjct: 157 V---------DTSRR-------EYHGALLDAEILADVYLIMT 182 >gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516] gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516] Length = 1421 Score = 35.0 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 7/89 (7%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT-FGVRVRPV---FCTKIASRLT 110 + ++ P + + D I H FD+ + +R+ P+ T +R Sbjct: 463 DMPKIEEVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCLDLRINPIRTYIDTLAFARAL 520 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 + H L K+ +N+ ++ D Sbjct: 521 EPHLKNHKLDTLTKKY-NVNLFNHHRACD 548 >gi|302420273|ref|XP_003007967.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261353618|gb|EEY16046.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 306 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 17/144 (11%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115 ++ L +L + K F R + L+ GV + V ++ +TR+ Sbjct: 75 FTTPGRDGRTLRSVLEGGRNTKCFWDIRSNAEALWSLCGVGLDNVMDIQLLENVTRSGDR 134 Query: 116 QH--GLKDNLKELLGINISK--------------AQQSSDWSADDLSDEQLQYAASDVVH 159 + L ++ L + + ++ ++ +S E + Y + V H Sbjct: 135 NYVQALDWCVQRDLAVEPEELRLGLRARRVVTRAGGSAAPFTERPMSPETVLYCVNRVFH 194 Query: 160 LHALRLQFTEKLQRLGRSDLATSC 183 L AL ++ G + Sbjct: 195 LPALH-ALYDENAEPGWAAWVRWE 217 >gi|46104670|ref|XP_380317.1| hypothetical protein FG00141.1 [Gibberella zeae PH-1] Length = 179 Score = 35.0 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 16/29 (55%) Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEK 170 L + +QY +DV++L AL + ++ Sbjct: 65 RRPLDAKTIQYCVNDVLYLPALYSAYAKR 93 >gi|262277819|ref|ZP_06055612.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114] gi|262224922|gb|EEY75381.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114] Length = 223 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 24/102 (23%) Query: 78 IFHYGRFDIAVLFYTFGVRVR------PVFCTK-IASRLTRTYTNQHGLKDNLKELLGIN 130 + H FD+A L + T IA + Q+ L K Sbjct: 86 VIHNAEFDLAFLNKELKEVGEKQISKDNIVDTLNIARE--KFPGAQNSLDALCKRF---- 139 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172 D S Q A D L + ++ EK + Sbjct: 140 ------KIDNSRR-----QKHSALLDCELLAKVYIELFEKKE 170 >gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803] gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803] Length = 1433 Score = 35.0 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 235 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 56/185 (30%), Gaps = 56/185 (30%) Query: 23 IAVDTETLGLMPRR-DRLCIVQL----------------------SPGDGTVDII--RIA 57 I +DTET GL PR DR ++++ + + Sbjct: 4 IVLDTETTGLNPRSGDR--VIEIGCVEMINRRLTGKNFHCYLNPERDSEEGALAVHGLTT 61 Query: 58 AGQKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112 ++ P + L D E I H FD+ L F P+F T++ S + T Sbjct: 62 EFLRDKPKFAAVAAELRDYISGAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQV-SGVIDT 120 Query: 113 Y--------TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 ++ L +S A ++ L A D L + Sbjct: 121 LVQAKEMHPGKRNSLDSLCDRY---GVSNAHRT------------LHGALLDAELLAEVY 165 Query: 165 LQFTE 169 L T Sbjct: 166 LAMTR 170 >gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271] gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271] Length = 1433 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3] gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3] Length = 1435 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 502 VAHNASFDMGFINVGFKKAGLAKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 560 Query: 133 KAQQS 137 + ++ Sbjct: 561 QHHRA 565 >gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp. pallidum SS14] gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp. pallidum SS14] gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp. pallidum str. Chicago] Length = 215 Score = 35.0 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 36/150 (24%) Query: 24 AVDTETLGLMPRRDRLCIVQL----SPGDGTV---------------DIIRIAAGQKNA- 63 A DTET GL DR+ +++ G + D+ +I + Sbjct: 17 AFDTETTGLKAEEDRI--IEIGAVTFDRKGIIARFSTLIFPDRAIPPDVSKINHITDDML 74 Query: 64 ---PNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLT 110 P ++ D + + H FD+ L V T ++ Sbjct: 75 VNKPRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAELSLCKKQPLSHKVVDTYAMAQAV 134 Query: 111 RTYTNQHGLK-DNLKELLGINISKAQQSSD 139 +H + NL G+ + A ++ D Sbjct: 135 FPGLGRHQYRLQNLALQFGLTVHAAHRAED 164 >gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c] gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c] Length = 758 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 393 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 449 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 450 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 509 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 510 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 548 >gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d] gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d] Length = 762 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58 PA R + + D ET GL D + V++ G V I R ++ Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453 Query: 59 GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97 N ++ +V DE H +FDI L + Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 +PV T SRL +H L K+ + + ++ Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552 >gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551] gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551] Length = 1436 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 43/158 (27%), Gaps = 34/158 (21%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 P + D ET GL D L V++ G+ I Sbjct: 411 PQHVDLTEATYVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDRFERFANPHHPLSATTI 470 Query: 55 RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVR-----VRP 99 + + AP + +L D + + H FD+ L Sbjct: 471 ELTGITDDMVQNAPEISEVLRDFHEWMGDSIL-VAHNASFDMGFLNMGLQKIGLEKAANG 529 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T R + H L K+ I + + ++ Sbjct: 530 VIDTLELGRFLYPHMKNHRLNTLAKKF-DIELVQHHRA 566 >gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Geobacillus sp. Y412MC61] gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC52] gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC61] gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. Y412MC52] Length = 909 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 22/102 (21%) Query: 78 IFHYGRFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L G P T +R+ + L D ++ LG+ Sbjct: 88 VAHNVDFDLPFLQAELERAGWPPFAGPTIDTVELARIVLPTAESYKLGDLARQ-LGLRHD 146 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + Q A SD L + ++L RL Sbjct: 147 RPHQ----------------ADSDAEVTAKLFIALLKRLSRL 172 >gi|296119307|ref|ZP_06837875.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM 20306] gi|295967699|gb|EFG80956.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM 20306] Length = 1388 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 25/134 (18%) Query: 56 IAAGQKNAPNLVGMLVDEKREKIFHY-GRFDIAVLFYTFGVRVRPVF------CTKIASR 108 A L+ +L + H ++D+ L +G+ V+ + T + +R Sbjct: 850 PVPTTDIAGELIPLLEKADTI-VGHNVLQYDLPALQRLYGLDVKALIKADRVRDTLVMAR 908 Query: 109 LTRTYTNQHGLK-DNLKELLGIN-------------ISKAQQSSDWSADDL-SDEQLQYA 153 L D + G++ ++K D + + ++YA Sbjct: 909 LRAGGDKNLKYDLDKVASRCGVDGKLLADGETALKALAKQFGGFD--KIPVDNPNYVEYA 966 Query: 154 ASDVVHLHALRLQF 167 DV A+ + Sbjct: 967 LQDVRANVAVYEKL 980 >gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29] gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29] Length = 1433 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLAKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28] gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28] Length = 1433 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLAKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342] gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342] Length = 1433 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|159469482|ref|XP_001692892.1| predicted protein [Chlamydomonas reinhardtii] gi|158277694|gb|EDP03461.1| predicted protein [Chlamydomonas reinhardtii] Length = 163 Score = 35.0 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 17/97 (17%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV--------DIIRIAAGQKNA---- 63 A V+ +AVD E + L R +LC++ L P V ++ ++ A Sbjct: 16 ALVGVEWLAVDAEGVSL-SRDGKLCLLALQPARLLVRTWQWLPGYLVDVSVLSTEAFSHC 74 Query: 64 ----PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96 +L +L K+ R D L++ G R Sbjct: 75 RRRDCSLKTLLECGDVTKLLFDVRRDAEALYHQHGAR 111 >gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. C56-T3] gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp. C56-T3] Length = 909 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 22/102 (21%) Query: 78 IFHYGRFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L G P T +R+ + L D ++ LG++ Sbjct: 88 VAHNVDFDLPFLQAELERAGWPPFAGPTIDTVELARIVLPTAESYKLGDLARQ-LGLHHD 146 Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 + Q A SD L + ++L RL Sbjct: 147 RPHQ----------------ADSDAEVTAKLFIALLKRLSRL 172 >gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1433 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH1134] gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264] gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676] gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185] gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2] gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15] gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4] gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550] gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W] gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876] gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171] gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH1134] gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus B4264] gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876] gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W] gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550] gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4] gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15] gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2] gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185] gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676] gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171] Length = 1433 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|332978822|gb|EGK15506.1| exonuclease, RNase T and DNA polymerase III [Psychrobacter sp. 1501(2011)] Length = 252 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 16/49 (32%) Query: 78 IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H +D+ VL + CTK S + H L L Sbjct: 98 VGHNIDYDMQVLKNAGVTHTPKLICTKAMSNFLLPTLDSHTLVALLYHF 146 >gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1433 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1433 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3] gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3] Length = 1433 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579] gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24] gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579] gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24] Length = 1435 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 502 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 560 Query: 133 KAQQS 137 + ++ Sbjct: 561 QHHRA 565 >gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9241] Length = 1433 Score = 35.0 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001] gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001] Length = 913 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 13/121 (10%) Query: 26 DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75 DTET L P ++ + + G + +A +AP L L K Sbjct: 341 DTETTSLDPMTAQIVGLSFAVEAGHAAYVPVAHRGPDAPVQLPRDEVLAKLKPWLESAKH 400 Query: 76 EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 +K+ + ++D VL G+ +R + T + S + ++ H + + LG+ K Sbjct: 401 KKVGQHLKYDEQVLANY-GIEMRGIEHDTLLQSYVLESHRP-HDMDNLALRHLGVKTIKY 458 Query: 135 Q 135 + Sbjct: 459 E 459 >gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407] gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407] gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis CT-43] Length = 1433 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160] Length = 382 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 6/81 (7%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASRLTRTYTNQHG 118 AP L L + + H FD L F G+ P V CT SR +HG Sbjct: 83 APALYERL--NGKLFVAHNASFDRGFLRSEFRRAGLAFDPDVLCTVRLSRALFPGEKRHG 140 Query: 119 LKDNLKELLGINISKAQQSSD 139 L ++ + + + +D Sbjct: 141 LDALVERHALVPSDRHRALAD 161 >gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666] gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666] Length = 203 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 9/71 (12%) Query: 62 NAPNLVGMLVDEKREK-----IFHYGRFDIAV----LFYTFGVRVRPVFCTKIASRLTRT 112 +AP+ ++ D R + H FD L +P CT + SR Sbjct: 66 SAPDAATVMTDANRFVGNAPLVAHNASFDRKFWEAELSRAGERASQPFACTMLVSRRLYP 125 Query: 113 YTNQHGLKDNL 123 H L + Sbjct: 126 QAPSHKLGVLV 136 >gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Ehrlichia canis str. Jake] gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon subunit [Ehrlichia canis str. Jake] Length = 239 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 56/191 (29%), Gaps = 52/191 (27%) Query: 18 RYVDAIAVDTETLGLMP-RRDRL----C--IVQ-LSPGDGTVDIIRIAAGQK-------- 61 + V + +DTET GL P DR+ C ++ + G + I Sbjct: 5 KGVREVVLDTETTGLDPDGGDRIIEIGCVELIDRVFTGKVFHEYINPERDIPYYATKIHG 64 Query: 62 -------NAPNLVGM------LVDEKREKIFHYGRFDIAVLFYTFGVRVR------PVFC 102 + P + V+ + H FDI + + V Sbjct: 65 ITIDMLKDKPKFSEIADKFLEFVNNSVL-VIHNAGFDIKFIKMELDKIQKDYDSDFQVVD 123 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T I +R + L + NIS L D + A D L Sbjct: 124 TLILARK-KFPGVSSTLDALCRRF---NIS------------LQDRKFHGALLDATLLGK 167 Query: 163 LRLQFTEKLQR 173 + +Q LQR Sbjct: 168 VYVQLMGGLQR 178 >gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125] gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125] Length = 1433 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ L F G PV T R H L K+ I + Sbjct: 501 VAHNASFDMGFLNTGFQKMGLGEAKNPVIDTLELGRFLYPTLKNHRLNTLCKKF-DIELV 559 Query: 133 KAQQS 137 ++ Sbjct: 560 SHHRA 564 >gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus asymbiotica] Length = 248 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 27/101 (26%) Query: 78 IFHYGRFDIAVLFYTFGVR-----VRPVFC--T---KIASRLTRTYTNQHGLKDNLKELL 127 I H FDI + Y FG FC T ++A L ++ L Sbjct: 96 IIHNAPFDIGFMDYEFGKLNRDIPPTTDFCKVTDSLQLARAL--FPGKRNNLDALCDRY- 152 Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 +I +Q++ L A D L + L T Sbjct: 153 --DIDNSQRT------------LHGALLDAEILADVYLIMT 179 >gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9842] gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222] gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto str. T04001] gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus G9842] gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto str. T04001] gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222] Length = 1433 Score = 35.0 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200] gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200] Length = 1435 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 502 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 560 Query: 133 KAQQS 137 + ++ Sbjct: 561 QHHRA 565 >gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] Length = 917 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 13/123 (10%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P RL + S G + +A + P L L Sbjct: 343 AFDTETTALDPMTARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDDVLARLKPWLESA 402 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 R+K+ + ++D VL G+ + + T + S + ++ H + LG+ Sbjct: 403 DRKKVGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 460 Query: 133 KAQ 135 K + Sbjct: 461 KYE 463 >gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149] gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149] Length = 465 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 45/154 (29%), Gaps = 39/154 (25%) Query: 13 AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS--------------------------P 46 + R + + D+ET GL P D +VQL P Sbjct: 264 DQTRLRDLTFVVFDSETTGLDPHTDE--VVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPP 321 Query: 47 GDGTVD-----IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG----VRV 97 G V ++ A G A + + H FD+A L Sbjct: 322 GSTAVHQINDAMVADAPGFDVACRAFHQFAEHAVI-VAHNAPFDMAFLRRQCRNQDYAFD 380 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 PV T S + + +H L L ++I Sbjct: 381 NPVLDTVHLSAVVFGGSAEHTLDALCNR-LNVHI 413 >gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815] gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815] Length = 392 Score = 35.0 bits (80), Expect = 6.4, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 43/136 (31%), Gaps = 29/136 (21%) Query: 20 VDAIAVDTETLGL---MPRRDRLCIVQL-----SPGDGTVDI---IRIAAGQKN------ 62 V + VD ET G R + +V++ S VD I Q Sbjct: 13 VPIVFVDLETTGGSVGDHRITEVGVVEVGPNGVSSWTTLVDPGQPIPPFIQQLTGITNDM 72 Query: 63 ---APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLT 110 AP + D + + I H FD L F G P V CT SR Sbjct: 73 VRGAPTFEAIAADLFARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNPDVLCTVRLSRAL 132 Query: 111 RTYTNQHGLKDNLKEL 126 +HGL ++ Sbjct: 133 FPAEKRHGLDALVERH 148 >gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC 19865] gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC 19865] Length = 244 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVLFYTFGVRVRP---------VFCTKIASRLTRTYTNQHGLKDNLKELLG 128 I H FD+ L + V T + +R R ++ L K L Sbjct: 87 IIHNAAFDLGFLDNELSLLGDNYGRIVERATVVDTLMMAR-ERYPGQRNSLDALCKRL-- 143 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + + + QL A D L + + T Sbjct: 144 -GVDNSHR------------QLHGALLDAQILADVYIALT 170 >gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043] gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043] Length = 891 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 68 GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKEL 126 L D R K H + I L G +R + T++A+ L + + L D + Sbjct: 371 AWLEDASRPKAMHDAKGPIEALAAR-GWILRGLTSDTQLAAYLVKPDQRTYHLDDLVLRH 429 Query: 127 LGINIS 132 L +S Sbjct: 430 LRRELS 435 >gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI 454] gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 247 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 26/115 (22%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTKIASRLTRTYT 114 A L + D I H FDI L F + P V T + ++ Sbjct: 74 ADALRDFVKDADI--IIHNAPFDIGFLNAEFAMLGLPPFCDHCGEVIDTLVQAK-AMFPG 130 Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169 ++ L + IS A ++ L A D L + L T Sbjct: 131 KRNSLDALCERF---GISNAHRT------------LHGALLDAELLADVYLAMTR 170 >gi|150015899|ref|YP_001308153.1| exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] gi|149902364|gb|ABR33197.1| Exonuclease, RNase T and DNA polymerase III [Clostridium beijerinckii NCIMB 8052] Length = 209 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 15/66 (22%) Query: 44 LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVRVR 98 LS G D++ + + I H FD+ L + + Sbjct: 65 LSDGQYFEDLVPEFLEDFMTADFL----------IGHNVNFDVRFLKHELLSLGEDFYPK 114 Query: 99 PVFCTK 104 VFCT Sbjct: 115 NVFCTM 120 >gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4] gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4] Length = 234 Score = 35.0 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 56/185 (30%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP-------------------------GDGTVDIIRIA 57 I +DTET GL P + I++++ G V I + Sbjct: 4 IFLDTETTGLYPAQGH-RIIEIAAVEVINRRITSQHYHVYLNPDREIDAGAQEVHGITLE 62 Query: 58 AGQKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTK 104 Q + P + +D + E I H FD+ L G +P + T Sbjct: 63 FLQ-DKPRFADVVGEFLDFVQDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGIIDTL 121 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 ++ R ++ L + GI+ SK L A D L + Sbjct: 122 KMAKEMRP-GQRNNLDALCRHF-GIDNSKRT--------------LHGALLDAELLADVY 165 Query: 165 LQFTE 169 L T Sbjct: 166 LAMTR 170 >gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473] gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473] Length = 254 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 27/125 (21%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT---- 103 ++ AP + + E + H FDI ++Y F + + + FCT Sbjct: 73 LLDKPTFADIAPEFIEFIR--GAELVIHNATFDIGFMYYEFRMLQQAIPNTDTFCTITDS 130 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163 + +R ++ L L I +++ L A D L + Sbjct: 131 LLMARRL-FPGKRNNLDALCDRYL---IDNTKRT------------LHGALLDAEILSEV 174 Query: 164 RLQFT 168 L T Sbjct: 175 YLAMT 179 >gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1435 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K+ L I ++ Sbjct: 502 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 560 Query: 133 KAQQS 137 + ++ Sbjct: 561 QHHRA 565 >gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319] gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319] Length = 1436 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 43/158 (27%), Gaps = 34/158 (21%) Query: 12 PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54 P + D ET GL D L V++ G+ I Sbjct: 411 PQHVDLTEATYVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDRFERFANPHHPLSATTI 470 Query: 55 RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVR-----VRP 99 + + AP + +L D + + H FD+ L Sbjct: 471 ELTGITDDMVQNAPEISEVLRDFHEWMGDSIL-VAHNASFDMGFLNMGLQKIGLEKAANG 529 Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137 V T R + H L K+ I + + ++ Sbjct: 530 VIDTLELGRFLYPHMKNHRLNTLAKKF-DIELVQHHRA 566 >gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH] Length = 379 Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQ 116 AP L+ L + + + H FD L F GV P V CT SR ++ Sbjct: 81 DIAPALLERL--DGKLFVAHNASFDRGFLRAEFERAGVAFNPDVLCTVRLSRALFPRESR 138 Query: 117 HGLKDNLKEL 126 HGL ++ Sbjct: 139 HGLDALIERH 148 >gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1] Length = 383 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%) Query: 33 MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89 P++ +Q G + + AP L L + + H FD L Sbjct: 53 DPQQPIPSFIQQLTGITNAMVRGAPTFEAIAPALFERL--NGKLFVAHNASFDRGFLRGE 110 Query: 90 FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 F G+ P V CT SR +HGL ++ + + + +D Sbjct: 111 FRRVGLAFDPDVLCTVRLSRALFPAEKRHGLDALVERHTLVPSDRHRALAD 161 >gi|156122488|gb|ABU50235.1| DNA polymerase [Synechococcus phage S-CBP42] Length = 588 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 73/210 (34%), Gaps = 45/210 (21%) Query: 23 IAVDTETLGLMPRRDRL-CIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKI 78 +A D ET GL+ ++ CIV D + + G + P++ +L D Sbjct: 3 LAFDIETDGLLRNLTKIHCIV---AQDLDTNEVYKFDGTGDHPSIREGLALLKDADELW- 58 Query: 79 FHYG-RFDIAVLFYTF--GVRVRPVFCTKIASRL-----------------TRTYTNQHG 118 H +D + F V+ T I SRL +H Sbjct: 59 GHNIIGYDFEAIKEVFPRWNYSSTVYDTLILSRLFFTDLLDRDFRSRPANMPAQLYGRHS 118 Query: 119 LKDNLKELLGINISKAQ-QSS---DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174 L+ L ++ K++ S DWS S E L Y A DVV +L FT K+ Sbjct: 119 LEAWGHRL---SVHKSEFGKSLSGDWST--YSPEMLDYCARDVVVSVSLARLFTAKVAE- 172 Query: 175 GRSDLATSCCNFLMDRAELDLLGWENVDIF 204 C + A ++ W+ + F Sbjct: 173 -----YRDCISTEHRLAT--IMAWQESEGF 195 >gi|126342543|ref|XP_001368220.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 838 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 217 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCSMGTGSDF 271 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 272 DVRVLPPSQLE 282 >gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 466 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Query: 77 KIF--HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130 KIF H RFD + +F G+ +P V CT SRL +H L + G+ Sbjct: 89 KIFVAHNARFDYGFIKASFKRVGIDFKPKVLCTVKLSRLLFPEQPRHNLDTIINAH-GLQ 147 Query: 131 ISKAQQS 137 +S ++ Sbjct: 148 VSARHRA 154 >gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4] gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264] gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264] Length = 379 Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 61 KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQ 116 AP L+ L + + + H FD L F GV P V CT SR ++ Sbjct: 81 DIAPALLERL--DGKLFVAHNASFDRGFLRAEFERAGVAFNPDVLCTVRLSRALFPRESR 138 Query: 117 HGLKDNLKEL 126 HGL ++ Sbjct: 139 HGLDALIERH 148 >gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2] gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2] Length = 1463 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 12/89 (13%) Query: 60 QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRV------RPVFCTKIASR 108 K+AP + ++ D + H FDI + + + PV T R Sbjct: 481 LKDAPEVEEVIRDFKEWVGDHTLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLELGR 540 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQS 137 H L K+ I +++ ++ Sbjct: 541 FLYPEFKNHRLNTLCKKF-DIELTQHHRA 568 >gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN] gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans PsJN] Length = 383 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 6/111 (5%) Query: 33 MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89 P++ +Q G + AP L L + + H FD L Sbjct: 53 DPQQPIPSFIQQLTGITNAMVRGAPTFDVIAPELFKRL--NGKLFVAHNASFDRGFLRGE 110 Query: 90 FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 F G+ P V CT SR +HGL ++ + + + +D Sbjct: 111 FRRVGLAFDPDVLCTVRLSRALFPAEKRHGLDALVERHALVPSDRHRALAD 161 >gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688] gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688] Length = 234 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 56/185 (30%) Query: 23 IAVDTETLGLMPRRDRLCIVQLSP-------------------------GDGTVDIIRIA 57 I +DTET GL P + I++++ G V I + Sbjct: 4 IFLDTETTGLYPAQGH-RIIEIAAVEVINRRITSQHYHVYLNPDREIDAGAQEVHGITLE 62 Query: 58 AGQKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTK 104 Q + P + +D + E I H FD+ L G +P + T Sbjct: 63 FLQ-DKPRFADVVGEFLDFVQDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGIIDTL 121 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 ++ R ++ L + GI+ SK L A D L + Sbjct: 122 KMAKEMRP-GQRNNLDALCRHF-GIDNSKRT--------------LHGALLDAELLADVY 165 Query: 165 LQFTE 169 L T Sbjct: 166 LAMTR 170 >gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus NJ8700] gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus NJ8700] Length = 254 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 58/187 (31%) Query: 23 IAVDTETLGLM---PRRDRLCIVQL---------SPGDGTVDIIRIAAGQK--------- 61 I +DTET G+ + CI+++ G+ I+ Sbjct: 11 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPEAIKVHGI 70 Query: 62 ------NAPNLVGMLVDEKREKI------FHYGRFDIAVLFYTFGVRVRPV--------F 101 + P+ + +E E I H FD+ + Y F P+ Sbjct: 71 TDEMLADKPDFSQI-ANEFIEYIKGAELLIHNAPFDVGFMDYEFRKLNLPIKTNDICTVT 129 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 T + +R ++ L L +I ++++ L A D L Sbjct: 130 DTLVMAR-QMYPGKKNNLDALCSRL---DIDNSKRT------------LHGALLDAEILA 173 Query: 162 ALRLQFT 168 + L T Sbjct: 174 DVYLAMT 180 >gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4] gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Thermoanaerobacter tengcongensis MB4] Length = 871 Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 17/148 (11%) Query: 63 APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKD 121 +L + E E + H + D V G+ + + T I + L + + L+ Sbjct: 347 LEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDLER 405 Query: 122 NLKELLGINI---------SKAQQSSDWSADDLSDE-QLQYAASDVVHLHALRLQFTEKL 171 LK L ++I K ++ +++S+E +Y HL L+ + + Sbjct: 406 VLKRYLKVDILSHEEVFGKGKDRRRY----EEVSEEVMAEYICGRCSHLFELKDKLMAFI 461 Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLGW 198 + + L + +++ G+ Sbjct: 462 EEMDMKKLLLEIEMPLVEVLKSMEVDGF 489 >gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] Length = 886 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 17/100 (17%) Query: 88 VLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS-----A 142 V+ + + R + ++ L + HGL + LG ++ D A Sbjct: 400 VMEHAVPLEPRALVDLEVLGWLVDSADVAHGLDQLARRWLGRHLD------DRGPLEAEA 453 Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182 L Q V +H +R +L LAT Sbjct: 454 APLGARQW------VEVVHPIREALERRLTEDDLWRLATD 487 >gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580] gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580] gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC 14580] gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580] Length = 1438 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 12/89 (13%) Query: 60 QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRV------RPVFCTKIASR 108 K+AP + ++ D + H FDI + + + PV T R Sbjct: 481 LKDAPEVEEVIRDFKEWVGDHTLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLELGR 540 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQS 137 H L K+ I +++ ++ Sbjct: 541 FLYPEFKNHRLNTLCKKF-DIELTQHHRA 568 >gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp. multocida str. Pm70] gi|31563219|sp|Q9CPE0|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70] Length = 253 Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 54/191 (28%), Gaps = 56/191 (29%) Query: 18 RYVDAIAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI 56 + I +DTET G+ + CI+++ + VD I Sbjct: 6 QPTRQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDAI 65 Query: 57 ------AAGQKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRPV----- 100 + P + +D + E + H FD+ + Y F + Sbjct: 66 KVHGITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDAI 125 Query: 101 ---FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 T +R ++ L LGI+ SK L A D Sbjct: 126 CMVTDTLQMAR-QMYPGKRNSLDALCDR-LGIDNSKRT--------------LHGALLDA 169 Query: 158 VHLHALRLQFT 168 L + L T Sbjct: 170 EILADVYLTMT 180 >gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299] gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299] Length = 972 Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 3/79 (3%) Query: 47 GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106 + + ++ G + +K++H FD V+ T Sbjct: 246 PKTLLWVDTMSLGDEGWKIFKPYFESPDVKKVWHNYGFDRHVIENHGVKLAGFAADTMHM 305 Query: 107 SRL---TRTYTNQHGLKDN 122 +RL R + L+ Sbjct: 306 ARLWNSNRKLEGGYSLEAL 324 >gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis 11-1] gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis 11-1] Length = 247 Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVLFY-------TFGVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 I H FD+ L Y G V V T + +R R ++ L K L Sbjct: 87 IIHNAAFDLGFLDYELSRCGAHLGRIVDRCSVVDTLLLAR-ERYPGQRNSLDALCKRL-- 143 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + + + QL A D L + + T Sbjct: 144 -GVDNSHR------------QLHGALLDAQILADVYIALT 170 >gi|195174216|ref|XP_002027875.1| GL18050 [Drosophila persimilis] gi|194115556|gb|EDW37599.1| GL18050 [Drosophila persimilis] Length = 284 Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 11/144 (7%) Query: 34 PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 R +V ++ + T + I A P L +L + K+ HY LFY Sbjct: 78 RHRPVAVLV-VATANQT-YVFDIQALGAFFPELKKLLEAKYPRKVVHYSHRISDQLFYKH 135 Query: 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK---------AQQSSDWSADD 144 +++ T +A + R + L + + +L I + + ++ ++A Sbjct: 136 QIKLTGFSDTFVALCVARQDKSACSLPEAISSVLNIPLRELLCDEVTGVSESRQLFTARP 195 Query: 145 LSDEQLQYAASDVVHLHALRLQFT 168 LS +Q ++ + H + + T Sbjct: 196 LSGDQFRFLGRMAILQHQMHDRLT 219 >gi|332666585|ref|YP_004449373.1| TonB-dependent receptor plug [Haliscomenobacter hydrossis DSM 1100] gi|332335399|gb|AEE52500.1| TonB-dependent receptor plug [Haliscomenobacter hydrossis DSM 1100] Length = 1026 Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 12/79 (15%) Query: 29 TLGLMPRR---DRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83 +GL VQ S GDG +D K P+L G L + F++GR Sbjct: 817 FIGLR-YTGVDPETGDVQFEDSNGDGIIDYDDAQIIGKAMPDLFGGLTNS-----FNFGR 870 Query: 84 FDIAVLFY-TFGVRVRPVF 101 FD+ V + G +V + Sbjct: 871 FDLTVFTRFSIGNQVYNLI 889 >gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR] gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR] Length = 1442 Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 8/90 (8%) Query: 55 RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRL 109 + P + + D + H +FD L +PV T +R Sbjct: 491 DAPPIAEVLPKFIDFVGDA--VLVAHNAQFDTGFLRANMEKILNRTLAQPVLDTLGLARG 548 Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139 H LK KE + + ++ D Sbjct: 549 LFPDMKNHKLKTLAKEF-NVKLENHHRAVD 577 >gi|159127404|gb|EDP52519.1| RNA exonuclease Rex3, putative [Aspergillus fumigatus A1163] Length = 645 Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 46 PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105 GDG +++ A L+ + I H D+ + + T + Sbjct: 493 TGDGA---LQVVESPAAARALLFKFLQPDTPLIGHAIDNDLNACRI---IHPT-IIDTVL 545 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI-SKAQQSSD 139 R + GLK +K+ L +I +K Q D Sbjct: 546 LYPHPRGLPIRMGLKALVKKYLDRDIQTKGSQGHD 580 >gi|70999342|ref|XP_754390.1| RNA exonuclease Rex3 [Aspergillus fumigatus Af293] gi|74674483|sp|Q4WYA1|REXO3_ASPFU RecName: Full=RNA exonuclease 3 gi|66852027|gb|EAL92352.1| RNA exonuclease Rex3, putative [Aspergillus fumigatus Af293] Length = 645 Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 46 PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105 GDG +++ A L+ + I H D+ + + T + Sbjct: 493 TGDGA---LQVVESPAAARALLFKFLQPDTPLIGHAIDNDLNACRI---IHPT-IIDTVL 545 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI-SKAQQSSD 139 R + GLK +K+ L +I +K Q D Sbjct: 546 LYPHPRGLPIRMGLKALVKKYLDRDIQTKGSQGHD 580 >gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter segnis ATCC 33393] gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter segnis ATCC 33393] Length = 253 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 57/204 (27%), Gaps = 61/204 (29%) Query: 23 IAVDTETLGLM---PRRDRLCIVQL---------SPGDGTVDIIRIAAGQK--------- 61 I +DTET G+ + CI+++ G+ I+ Sbjct: 11 IVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPEAIKVHGI 70 Query: 62 ------NAPNLVGMLVDEKREKI------FHYGRFDIAVLFYTFGVRVRPV--------F 101 + P+ + +E E I H FD+ + Y F P+ Sbjct: 71 TDEMLADKPDFSQI-ANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICQVT 129 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161 T +R ++ L LGI+ SK L A D L Sbjct: 130 DTLTMAR-QMYPGKKNNLDALCSR-LGIDNSKRT--------------LHGALLDAEILA 173 Query: 162 ALRLQF---TEKLQRLGRSDLATS 182 + L L S++ Sbjct: 174 DVYLAMTGGQTSLFDENESEIIQQ 197 >gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c] gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c] Length = 239 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVLFYTF-------GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 I H FD+ L Y G V T + +R R ++ L K L Sbjct: 91 IIHNAAFDLGFLDYELSRLGSQYGKITDRASVLDTLVMAR-ERYPGQRNSLDALCKRL-- 147 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + A + QL A D L + + T Sbjct: 148 -GVDNAHR------------QLHGALLDAQILADVYIALT 174 >gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Dixon] gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12] gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Dixon] gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 239 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVLFYTF-------GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 I H FD+ L Y G V T + +R R ++ L K L Sbjct: 91 IIHNAAFDLGFLDYELSRLGSQYGKITDRASVLDTLVMAR-ERYPGQRNSLDALCKRL-- 147 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + A + QL A D L + + T Sbjct: 148 -GVDNAHR------------QLHGALLDAQILADVYIALT 174 >gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1] gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23] gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1] gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit [Xylella fastidiosa Ann-1] gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23] gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp. fastidiosa GB514] Length = 239 Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVLFYTF-------GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128 I H FD+ L Y G V T + +R R ++ L K L Sbjct: 91 IIHNAAFDLGFLDYELSRLGSQYGKITDRASVLDTLVMAR-ERYPGQRNSLDALCKRL-- 147 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 + A + QL A D L + + T Sbjct: 148 -GVDNAHR------------QLHGALLDAQILADVYIALT 174 >gi|298244072|ref|ZP_06967878.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] gi|297551553|gb|EFH85418.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM 44963] Length = 1009 Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 68/220 (30%), Gaps = 55/220 (25%) Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIV-----Q-----------LSPGDGTVDIIRIAAG 59 A + IA+D ET GL +D + V Q +SPG ++ G Sbjct: 2 AKKSAIRIALDLETTGLHAEQDAILEVAAIKFQGSEVLDTFETFISPGRSIPYRVQRLTG 61 Query: 60 QK-----NAPNLVGM-------LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107 K AP + L D + H FD+ L P+ T + Sbjct: 62 IKPELLVGAPPFDAISRQLHTFLGDYPI--VGHSIPFDVGFLRRWGLAHSNPMVDTFELA 119 Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 + + + L + LGI + SD A D V + L Sbjct: 120 TVLLPSLSSYNLGQ-VAHSLGIQVP-----SD-RHR---------AMVDTVLAMQVFLSL 163 Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL-LGWENVDIFSH 206 E+LQ T L D A LD W + F H Sbjct: 164 YERLQ--------TVDLALLQDLARLDAPRSWPLLHFFRH 195 >gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174] Length = 1439 Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 23/125 (18%) Query: 53 IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP----VFCTKIASR 108 ++ Q P + + H FD++ + + P T +R Sbjct: 472 VMDAPDIQTILPQFLE-FCAGAVM-VAHNADFDMSFIIENCKRQGLPQEYTYVDTVGMAR 529 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 N+ L + + +G+++ + A D + ++F Sbjct: 530 FLLPALNRFKLDT-VAKAVGVSLDHHHR----------------AVDDAACTAEIFVRFV 572 Query: 169 EKLQR 173 E L+ Sbjct: 573 EMLKE 577 >gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens NCTC 8239] gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens NCTC 8239] Length = 1449 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 7/87 (8%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRT 112 + P + + D + H FD+ + PV T +R Sbjct: 498 PTIDEVLPKFMEFVGDS--VLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLYP 555 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139 + L + + + LGI++ ++ D Sbjct: 556 DLKKVKL-NLVAKHLGISLENHHRAVD 581 >gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens E str. JGS1987] gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens E str. JGS1987] Length = 1449 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 7/87 (8%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRT 112 + P + + D + H FD+ + PV T +R Sbjct: 498 PTIDEVLPKFMEFVGDS--VLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLYP 555 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139 + L + + + LGI++ ++ D Sbjct: 556 DLKKVKL-NLVAKHLGISLENHHRAVD 581 >gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens C str. JGS1495] gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens C str. JGS1495] Length = 1449 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 7/87 (8%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRT 112 + P + + D + H FD+ + PV T +R Sbjct: 498 PTIDEVLPKFMEFVGDS--VLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLYP 555 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139 + L + + + LGI++ ++ D Sbjct: 556 DLKKVKL-NLVAKHLGISLENHHRAVD 581 >gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124] gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens B str. ATCC 3626] gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens ATCC 13124] gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium perfringens B str. ATCC 3626] Length = 1449 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 7/87 (8%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRT 112 + P + + D + H FD+ + PV T +R Sbjct: 498 PTIDEVLPKFMEFVGDS--VLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLYP 555 Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139 + L + + + LGI++ ++ D Sbjct: 556 DLKKVKL-NLVAKHLGISLENHHRAVD 581 >gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614] gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614] Length = 889 Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 44 LSPGDGTVDIIRIAAGQ-KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-F 101 L+ DG + + L G L D KR K+ H + + L +G+ + + Sbjct: 347 LATTDGLAAWVAADQLDVADQTALAGWLADPKRPKVLHDAKGPMLAL-AAWGLPLAGLDR 405 Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINI 131 T +++ L R + L D L + Sbjct: 406 DTALSAYLARPDQRSYDLADLTVRYLKREL 435 >gi|32442295|gb|AAP82218.1| DNA polymerase [Podovirus SOG] Length = 410 Score = 34.6 bits (79), Expect = 7.5, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%) Query: 102 CTKIASRL-TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160 T + S L + H L + +LG K +DWS S E +Y DV L Sbjct: 1 DTLVLSSLACPSRAGGHSLDNW-GSILGFP--KGD-HTDWST--YSPEMREYCKRDVGLL 54 Query: 161 HALRLQFTEKLQ 172 + L E+L+ Sbjct: 55 EKVVLALDEELK 66 >gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 237 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 33/122 (27%), Gaps = 29/122 (23%) Query: 60 QKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVR--------VRPVFCTKIA 106 + P + ++ + + H FDI + + + T Sbjct: 71 LLDKPIFKDIADSFLNYIKNSILVIHNASFDIGFINQELEILNKKIKINTFCSIIDTLKM 130 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 +R ++ L I+K+ ++ L A D L L L Sbjct: 131 ARKL-FPGKKNTLDALCTRY---KINKSHRN------------LHSAIVDSYLLGKLYLL 174 Query: 167 FT 168 T Sbjct: 175 MT 176 >gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW] gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW] Length = 212 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 8/86 (9%) Query: 52 DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCTKIA 106 D++ + L E + H FD++VL G V CT +A Sbjct: 64 DVVDAPEFPDIWDAMRPEL--EGAVLLAHNASFDMSVLRAMLGTYGLAVPDHGYLCTLVA 121 Query: 107 SRLTRTYTNQHGLKDNLKELLGINIS 132 +R +H L ++ GI + Sbjct: 122 ARRAWPDLEKHRLNHLARQF-GIELE 146 >gi|198467545|ref|XP_002134564.1| GA22370 [Drosophila pseudoobscura pseudoobscura] gi|198149295|gb|EDY73191.1| GA22370 [Drosophila pseudoobscura pseudoobscura] Length = 284 Score = 34.6 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 11/144 (7%) Query: 34 PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93 R +V ++ + T + I A P L +L + K+ HY LFY Sbjct: 78 RHRPVAVLV-VATANQT-YVFDIQALGAFFPELKKLLEAKYPRKVVHYSHRISDQLFYKH 135 Query: 94 GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK---------AQQSSDWSADD 144 + + T +A + R + L + + +L I + + ++ ++A Sbjct: 136 QITLTGFSDTFVALCVARQDKSACSLPEAISSVLNIPLRELLSDEVTGVSESRQLFTARP 195 Query: 145 LSDEQLQYAASDVVHLHALRLQFT 168 LS +Q ++ + H + + T Sbjct: 196 LSGDQFRFLGRMAILQHQMHDRLT 219 >gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] Length = 896 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 37/152 (24%) Query: 66 LVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDN 122 + ++ KI DI L G++++ +F KIA + H L Sbjct: 376 FQAIFENKN--KILISADVKNDIIWLKRA-GIKLKNDIFDIKIAHYVLHP-DISHDLGRV 431 Query: 123 LKELLGINI--SKAQQSSDWSADDLSDEQL-------------QYAAS-DVVHLHALRLQ 166 E L + SK + D+QL +A DV+ L + Sbjct: 432 ALEYLNYKLSGSKKE-----------DQQLTLQFDEEAGTEDNDFAEKTDVIF--QLHEK 478 Query: 167 FTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197 + LQ+ G L + + A+++ G Sbjct: 479 LCDDLQQTGLLALYNNIEMPLVFVLADMEYEG 510 >gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM 30120] gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM 30120] Length = 253 Score = 34.6 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 35/122 (28%), Gaps = 32/122 (26%) Query: 62 NAPNLVGMLVDEKRE------KIFHYGRFDIAVLFYTF-----GVRVRPVFCT----KIA 106 + P + DE E + H FDI + Y F G+ FCT + Sbjct: 75 DKPVFADI-ADEFIEFIRGAELVIHNAPFDIGFMDYEFRKLNRGIPPTAEFCTITDSLVL 133 Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166 +R ++ L L D S L A D L + L Sbjct: 134 ARKI-FPGKRNNLDALCDRYL----------IDNSKRTL-----HGALLDAEILSDVYLA 177 Query: 167 FT 168 T Sbjct: 178 MT 179 >gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 484 Score = 34.6 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 28/146 (19%) Query: 47 GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFC 102 GD TV + A L+ +L + H +FD L F P C Sbjct: 97 GDETVAGAPPFSA--LAHELLPLLR--GCILLAHNSKFDYTFLRRAFARCGLPFAAPTLC 152 Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162 T SR +H L+ ++ GI + +++D DV A Sbjct: 153 TVQLSRRLYPQFYKHSLESIIERH-GIAAASRHRATD----------------DV---LA 192 Query: 163 LRLQFTEKLQRLGRSDLATSCCNFLM 188 + L+ G A C+ L Sbjct: 193 VADYLETALREQGSETFAAHACHLLQ 218 >gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] Length = 655 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 15/97 (15%) Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF----------GVR-V 97 G ++++ +A GQ ++ LVD K H F+ L G Sbjct: 42 GPIEVVDLANGQSIPDEVLAALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGP 101 Query: 98 RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134 R CT I S L + +L +++ K Sbjct: 102 RQWRCTMIWSAYLGLP---MSLDA-VATVLKLDVQKD 134 >gi|258575311|ref|XP_002541837.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237902103|gb|EEP76504.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 720 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 8/89 (8%) Query: 53 IIRIAAGQKN-APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110 + + + L+ +L + H D++ L P + T I Sbjct: 398 LDPVTTTLSDIQKRLLNILTPRSIL-VGHSLNSDLSALK-----LTHPFIIDTAIIYPHP 451 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139 R + LK ++ LG I K Q D Sbjct: 452 RGSPLKSSLKWLSQKYLGREIQKGQTGHD 480 >gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91] Length = 346 Score = 34.6 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%) Query: 78 IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD L F G+ P V CT SR ++HGL ++ Sbjct: 96 VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148 >gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702] Length = 901 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 8/87 (9%) Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVF-CTK 104 VDI + L L D K H D ++ G+ + V T Sbjct: 382 HAVDIDLTDQDPADEATLRAWLADRGAPKWVH----DAKAEWHKLNGSGLVLAGVEQDTA 437 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINI 131 +A+ L R L D ++ +G I Sbjct: 438 LAAYLLRPDLRTGDLADVVQRHVGHEI 464 >gi|68299732|ref|YP_249581.1| DNA polymerase [Vibriophage VP4] gi|66473271|gb|AAY46280.1| DNA polymerase [Vibriophage VP4] Length = 678 Score = 34.6 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 29/117 (24%) Query: 78 IFHYG-RFDIAVLFY----TFGVRV----RPVFCTKIASRLT------------------ 110 +FH G ++D L FG + + V T + SRL Sbjct: 59 VFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDAGLLRSGRIT 118 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 H LK L + +Q + W + ++ + Y DV L +F Sbjct: 119 GKLYGSHSLKAWGMRLGELKGDYGEQEAAWI--EFNEPMMDYCKQDVQVTLKLFEKF 173 >gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12] Length = 239 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 49/185 (26%), Gaps = 56/185 (30%) Query: 23 IAVDTETLGLMPRR-DRLCIVQLS------------------PGDGTVDIIRI------A 57 I +DTET GL P DR+ ++++ D + Sbjct: 5 IVLDTETTGLNPASGDRI--IEVAGVELFNRRLTGKHYHAYLNPDRASHPDALKVHGLTE 62 Query: 58 AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPVF--------CTK 104 + P + D E I H FD A L RP F T Sbjct: 63 EFLSDKPRFEQIADDLLEFVRDAEVIIHNAPFDCAFLDAELERLNRPAFRQHVPLVTDT- 121 Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164 +A + + L K I ++ L A D L + Sbjct: 122 LAMAKLQFPGKFNNLDALCKRF---GIDNTHRT------------LHGALLDAELLAEVY 166 Query: 165 LQFTE 169 L T Sbjct: 167 LSLTR 171 >gi|114655299|ref|XP_001156164.1| PREDICTED: hypothetical protein, partial [Pan troglodytes] Length = 42 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 115 NQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQ 149 N LK + +L + K+ + S+W A+ L+++Q Sbjct: 6 NGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQ 42 >gi|81428523|ref|YP_395523.1| ATP-dependent helicase [Lactobacillus sakei subsp. sakei 23K] gi|78610165|emb|CAI55214.1| Putative ATP-dependent helicase, DinG family [Lactobacillus sakei subsp. sakei 23K] Length = 944 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 24/123 (19%) Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRPV--FCTKIASRLTR 111 + AP LV +L + H FD+ L G++ + T +++ Sbjct: 71 PIFEDLAPTLVEILS--GTVFVAHNINFDLPFLNGELTRVGLQPLDLAGIDTVELAQIIL 128 Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171 + L+D + LL I Q A SD + L L+ + +L Sbjct: 129 PEAPSYRLQDLTQ-LLEIEHDNPHQ----------------ADSDALVTAKLFLKLSARL 171 Query: 172 QRL 174 Q L Sbjct: 172 QAL 174 >gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1] gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32] gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1] gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32] gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200] Length = 242 Score = 34.6 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 29/102 (28%) Query: 78 IFHYGRFDIAVLFYTFGVRVRP---------VFCTKIASRLTRTYTNQHGLKDNLKELLG 128 + H FD++ + + F + + T ++ ++ L K G Sbjct: 99 VAHNANFDVSFMDHEFSMLPSKGPKTMDICDILDTLEIAKFLHP-GQKNNLDALCKRY-G 156 Query: 129 INISKAQQSSDWSADDLSDEQLQY--AASDVVHLHALRLQFT 168 I D S Y A D L + L T Sbjct: 157 I---------DNSRR-------HYHGALLDAEILADVYLIMT 182 >gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] Length = 896 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 16/32 (50%) Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 F T +A+ L H L D + +LGI +S Sbjct: 404 FDTMLAAYLAHPDQRSHKLTDVVARILGIEVS 435 >gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383] gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383] Length = 917 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 13/123 (10%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P RL + S G + +A + P L L Sbjct: 343 AFDTETTSLDPMLARLVGLSFSVESGKAAYLPVAHRGPDMPEQLPLDEVLARLKPWLESA 402 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 R+K+ + ++D VL + + + T + S + ++ H + LG+ Sbjct: 403 DRKKVGQHLKYDAQVLANY-DIALNGIEHDTLLESYVVESHRT-HDMDSLALRHLGVKTI 460 Query: 133 KAQ 135 K + Sbjct: 461 KYE 463 >gi|110739343|dbj|BAF01584.1| hypothetical protein [Arabidopsis thaliana] Length = 377 Score = 34.6 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 6/30 (20%), Positives = 12/30 (40%) Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLGRSD 178 +YA D +L + +L + + D Sbjct: 1 MKRYAREDTHYLLYIYDVMRMELHTMAKED 30 >gi|74008599|ref|XP_852947.1| PREDICTED: similar to slit and trk like 4 protein isoform 2 [Canis familiaris] Length = 867 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 245 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 299 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 300 DVRVLPPSQLE 310 >gi|74008597|ref|XP_549303.2| PREDICTED: similar to slit and trk like 4 protein isoform 1 [Canis familiaris] Length = 838 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRVLPPSQLE 281 >gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88] gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88] Length = 882 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 8/66 (12%) Query: 66 LVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRPVFCTKIASRLTRTYTNQHGLKD 121 L + E + H D+ VL + +F KIA+ L + + + L Sbjct: 382 LKTIFEKEAVRVVSH----DVKVLSMALKKLDVEFTKALFDLKIAAYLIDSSKSDYDLST 437 Query: 122 NLKELL 127 ++E L Sbjct: 438 LIQECL 443 >gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius nubinhibens ISM] gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related 3'-5'exonuclease [Roseovarius nubinhibens ISM] Length = 231 Score = 34.6 bits (79), Expect = 8.6, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 24/97 (24%) Query: 78 IFHYGRFDIAVLFYTFGVRVRP------VFCT-KIASRLTRTYTNQHGLKDNLKELLGIN 130 I H FD+ L G P T +IA R R + L + N Sbjct: 87 IIHNAAFDMKFLNAELGWMGLPQIPWEQAIDTLEIARR--RFPGSPASLDALCRRF---N 141 Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 I + ++ L A D L + L+ Sbjct: 142 IDNSSRT------------LHGALLDSEILAEVYLEL 166 >gi|329851645|ref|ZP_08266402.1| coA-transferase family III family protein [Asticcacaulis biprosthecum C19] gi|328840491|gb|EGF90063.1| coA-transferase family III family protein [Asticcacaulis biprosthecum C19] Length = 402 Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 11/78 (14%) Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR- 164 A+ Q L ++E +++K DW +D +YA D L Sbjct: 237 AALFEAGDGRQISLG-VVQENQFKSLAKHIGREDWLSDP------RYATPD---LRRAHA 286 Query: 165 LQFTEKLQRLGRSDLATS 182 +L R+ A Sbjct: 287 QALQAELAEALRTKPAAQ 304 >gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus c2] gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus c2] Length = 481 Score = 34.6 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 50/160 (31%), Gaps = 39/160 (24%) Query: 1 MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL------------------CIV 42 M + V + + A A +D ET G RDR+ C++ Sbjct: 1 MNAVEVADR-LRAFIAQLGQPLACLDIETTGSHTERDRITEIGIVTLHPDGTQSNWSCLI 59 Query: 43 QLSPGDGTVDIIRIAAGQ-------KNAPNLV----GMLVD-EKREKIFHYGRFDIAVLF 90 G RI + P +L E I H RFD+ L Sbjct: 60 ----HPGCAIPARITTLTGITNEMVADQPVFAHRAQALLERLENHIVIAHNARFDLGFLK 115 Query: 91 YTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 F G+R P V C+ SR +H L ++ + Sbjct: 116 QAFRREGIRFNPSVLCSVKLSRQMFPAERRHNLDSVMQRM 155 >gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 34.6 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 41/151 (27%) Query: 47 GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-TFGVRVRPVFCTKI 105 G+G V + A +L L D FH FD VL + + + + Sbjct: 44 GEGPVQVWDCTATATLPDDLSAALHDPAVLLYFHNSHFDRTVLRHCGIDIPLERWRDSM- 102 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI----SKAQQS------------------------ 137 A L + G L ELL + + K + Sbjct: 103 AQALAHSLPGALG---TLCELLRVPVEHAKDKDGKRLVALFCKPRPAHCTLRRATRDTHP 159 Query: 138 SDWSADDLSDEQ-LQYAASDVVHLHALRLQF 167 +DW Q ++YA DV + + + Sbjct: 160 TDW-------AQFVEYAQRDVAAMRDVVKRL 183 >gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402] gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 850 Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 8/96 (8%) Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCT 103 D++ A +++ +L + + H +FD+ L F + R + T Sbjct: 60 DAFDLVDAPNFSHVASHIIKLL--DGCVFVAHNVQFDLRFLQKYFSEAGHKFQPRYIIDT 117 Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139 ++ ++ LK + LGI +S A ++ D Sbjct: 118 VDWFKIVYPSLERYQLKSIADD-LGIELSSAHRAID 152 >gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243] gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243] Length = 381 Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%) Query: 78 IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD L F G+ P V CT SR ++HGL ++ Sbjct: 96 VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148 >gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1] Length = 597 Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 20/125 (16%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-- 99 VQ+ G + P+ + H RFDI L + P Sbjct: 79 VQVLTGITDAMVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWG 136 Query: 100 ---VFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 + T +R L+R + L + +S S L+D + A Sbjct: 137 DPTLVDTLALARSVLSRGEVRNYKLSTLSQLFRTTTMS--------SHRALADAR---AT 185 Query: 155 SDVVH 159 DV+H Sbjct: 186 VDVLH 190 >gi|281416182|ref|YP_003347917.1| DNA polymerase [Vibrio phage N4] gi|237701489|gb|ACR16482.1| DNA polymerase [Vibrio phage N4] Length = 678 Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 37/117 (31%), Gaps = 29/117 (24%) Query: 78 IFHYG-RFDIAVLFY----TFGVRV----RPVFCTKIASRLT------------------ 110 +FH G ++D L FG + R V T + SRL Sbjct: 59 VFHNGIKYDYPALKKLKKLYFGKNLNIPKRNVLDTLVMSRLLHSNLKDTDAGLLRSGRIT 118 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 H LK L + +Q + W + ++ + Y DV L +F Sbjct: 119 GKLYGSHSLKAWGMRLGELKGDYGEQEAAWI--EFNEPMMDYCKQDVQVTLKLFEKF 173 >gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2] gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3] gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08] Length = 598 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 20/125 (16%) Query: 42 VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-- 99 VQ+ G + P+ + H RFDI L + P Sbjct: 80 VQVLTGITDAMVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWG 137 Query: 100 ---VFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154 + T +R L+R + L + +S S L+D + A Sbjct: 138 DPTLVDTLALARSVLSRGEVRNYKLSTLSQLFRTTTMS--------SHRALADAR---AT 186 Query: 155 SDVVH 159 DV+H Sbjct: 187 VDVLH 191 >gi|311105570|ref|YP_003978423.1| nitric oxide reductase large subunit [Achromobacter xylosoxidans A8] gi|310760259|gb|ADP15708.1| nitric oxide reductase large subunit [Achromobacter xylosoxidans A8] Length = 761 Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 12/66 (18%) Query: 137 SSDWSADDLSDEQL----------QYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186 ++DW +L+ L YA D ALR + R RSD AT Sbjct: 84 TADWLHRELT-AWLDLAAREQHGQDYAQLDARAQAALRADLKAE-YRANRSDAATDTLTV 141 Query: 187 LMDRAE 192 RA Sbjct: 142 SPRRAR 147 >gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] Length = 950 Score = 34.6 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 58 AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117 + A L +L + + + H + +L P+F TK+A L + Sbjct: 412 IDRDMASQLQTLLDEYHQSMVVHGYKEQSHLLGSAGVKLPEPLFDTKLAGYLVHPDFHAD 471 Query: 118 GLKDNLKELLGINISKAQQSS 138 L+ L +++ + +S+ Sbjct: 472 TLEQAAAHFLDLHVEEQSESA 492 >gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] Length = 952 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 48 DGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105 DG I +A + N L G L D + K+ H + + L G+ + V T I Sbjct: 413 DGAAAYIDLAGQDAESENVLAGWLRDPESPKVLHGFKAALKALTSR-GLELEGVVDDTSI 471 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI 131 + L + + L + + L + I Sbjct: 472 SGYLIQPDRRTYELAELAQHHLNVGI 497 >gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides ATCC 15264] gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides ATCC 15264] Length = 247 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 56/196 (28%), Gaps = 66/196 (33%) Query: 20 VDAIAVDTETLGLMPRR-DRL-------------------------CIVQLSPGDGTVDI 53 I +DTET G PR DRL ++ D Sbjct: 2 AREIVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLI-------PADA 54 Query: 54 IRIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV---- 100 IR+ + AP ++VD I H +FD + + G P+ Sbjct: 55 IRVHGITDDKVKDAPKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHET 114 Query: 101 --FCT-KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157 T ++A + R + L K K L D L A D Sbjct: 115 RWIDTLQLAQK--RFPGMANSLDALCKRY------KIS---------LVDRTLHGALIDA 157 Query: 158 VHLHALRLQFTEKLQR 173 L + L+ +R Sbjct: 158 RLLAEVYLELKGGKER 173 >gi|325171294|ref|YP_004251265.1| DNA polymerase [Vibrio phage ICP3] gi|323512000|gb|ADX87462.1| DNA polymerase [Vibrio phage ICP3] gi|323512146|gb|ADX87605.1| DNA polymerase [Vibrio phage ICP3_2008_A] gi|323512194|gb|ADX87652.1| DNA polymerase [Vibrio phage ICP3_2007_A] Length = 678 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 29/117 (24%) Query: 78 IFHYG-RFDIAVLFY----TFGVRV----RPVFCTKIASRLT------------------ 110 +FH G ++D L FG + + V T + SRL Sbjct: 59 VFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDAGLLRSGRIT 118 Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167 H LK L + +Q + W + ++ + Y DV L +F Sbjct: 119 GKLYGSHSLKAWGMRLGELKGDYGEQEAAWV--EFNEPMMDYCKQDVQVTLKLFEKF 173 >gi|159475990|ref|XP_001696097.1| hypothetical protein CHLREDRAFT_192202 [Chlamydomonas reinhardtii] gi|158275268|gb|EDP01046.1| predicted protein [Chlamydomonas reinhardtii] Length = 999 Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 12/30 (40%) Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEK 170 LS QL+ AA HL L ++ Sbjct: 925 LTRPLSPSQLEVAARAARHLPELWAALVQE 954 >gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC 13177] Length = 349 Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%) Query: 78 IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD L F G+ P V CT SR ++HGL ++ Sbjct: 96 VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148 >gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1] gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1] Length = 234 Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 12/66 (18%) Query: 78 IFHYGRFDIAVLFYTFG------VRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGIN 130 + H FD L + G V + + T +IA ++ +H L Sbjct: 87 VAHNASFDFGFLNWELGACGRSIVDMGRMVDTLQIARKM--HPGAKHSLDALCSRY---G 141 Query: 131 ISKAQQ 136 I ++ + Sbjct: 142 IDRSHR 147 >gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium PHSC20C1] Length = 417 Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 14/95 (14%) Query: 52 DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKI 105 DI+ A + A LV +L E R + H FD+ L + CT Sbjct: 64 DIVDAPAFEHIAGQLVDLL--EGRVLVAHNASFDLKFLVAELERTAAWMSTDFVSLCTM- 120 Query: 106 ASRLTRTYTNQHG--LKDNLKELLGINISKAQQSS 138 +L R Y G L D L I + A ++S Sbjct: 121 --QLAREYLPGAGRALAD-CCAALDIQLDDAHRAS 152 >gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131] gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131] Length = 247 Score = 34.6 bits (79), Expect = 9.4, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 25/100 (25%) Query: 78 IFHYGRFDIAVLFYTF-----GVRVRPVFCT----KIASRLTRTYTNQHGLKDNLKELLG 128 + H FDI + Y F G+ FCT + +R ++ L L Sbjct: 96 VIHNAPFDIGFMDYEFRKLNKGIPPTQDFCTITDSLVLARKL-FPGKRNNLDALCDRYL- 153 Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168 D S L A D L + L T Sbjct: 154 ---------IDNSKRTL-----HGALLDAEILSDVYLAMT 179 >gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252] gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252] Length = 616 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 6/80 (7%) Query: 51 VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIA 106 V + ++ P D + H FD+ + G+R +PV T + Sbjct: 482 VLLQDKPPIEEVLPRFYRFARDT--VLVGHNVAFDLKFIRQKEKALGLRFDQPVLDTMLL 539 Query: 107 SRLTRTYTNQHGLKDNLKEL 126 + + +GL + Sbjct: 540 AAVVDPERQHYGLDELAAAF 559 >gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium extorquens PA1] gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium extorquens PA1] Length = 297 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 38/140 (27%) Query: 21 DAIAVDTETLGLMPRRDRLC------------------IV---QL--SPGDGTVDIIRIA 57 +A+D ET RD C ++ QL SPG+ V I + Sbjct: 2 KVVAIDFETANER--RDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGI-LP 58 Query: 58 AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT-KIA 106 A ++AP ++ + + H FD+ VL + PV CT +IA Sbjct: 59 ADVRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIA 118 Query: 107 SRLTRTYTNQHGLKDNLKEL 126 R+ HGL L Sbjct: 119 RRVFPD-PAGHGLAKVAGRL 137 >gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia dolosa AUO158] gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia dolosa AUO158] Length = 736 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 13/123 (10%) Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73 A DTET L P RL + S G + +A + P L L Sbjct: 346 AFDTETTALDPMVARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLARLKPWLESA 405 Query: 74 KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 R K+ + ++D VL G+ + + T + S + ++ H + LGI Sbjct: 406 DRRKVGQHLKYDAQVLANY-GIELNGIEHDTLLESYVLESHRT-HDMDSLALRHLGIKTI 463 Query: 133 KAQ 135 K + Sbjct: 464 KYE 466 >gi|318041263|ref|ZP_07973219.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp. CB0101] Length = 304 Score = 34.6 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 32/105 (30%) Query: 25 VDTETLGLMPRRDR---LC-----------IVQLS-------PGDGTVDIIRIAAGQKNA 63 +DTET GL P+RDR L + Q+S V+ I Q+ Sbjct: 78 LDTETTGLDPQRDRCIELGAVLFDVPRRSVLSQVSLLLPCEQNPAQAVNGIDPRLTQQPQ 137 Query: 64 P------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102 P +L + H FD FG+ P Sbjct: 138 PWQQGLQWFEALLAASDVV-VAHNAAFD----RQWFGIAPLPAID 177 >gi|332245412|ref|XP_003271856.1| PREDICTED: SLIT and NTRK-like protein 4 isoform 1 [Nomascus leucogenys] gi|332245414|ref|XP_003271857.1| PREDICTED: SLIT and NTRK-like protein 4 isoform 2 [Nomascus leucogenys] Length = 837 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|311277072|ref|XP_003135482.1| PREDICTED: SLIT and NTRK-like protein 4-like [Sus scrofa] gi|311277077|ref|XP_003135484.1| PREDICTED: SLIT and NTRK-like protein 4-like [Sus scrofa] Length = 838 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|297711227|ref|XP_002832252.1| PREDICTED: SLIT and NTRK-like protein 4-like isoform 1 [Pongo abelii] gi|297711229|ref|XP_002832253.1| PREDICTED: SLIT and NTRK-like protein 4-like isoform 2 [Pongo abelii] gi|297711231|ref|XP_002832254.1| PREDICTED: SLIT and NTRK-like protein 4-like isoform 3 [Pongo abelii] Length = 837 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|296236592|ref|XP_002763394.1| PREDICTED: SLIT and NTRK-like protein 4 isoform 1 [Callithrix jacchus] gi|296236594|ref|XP_002763395.1| PREDICTED: SLIT and NTRK-like protein 4 isoform 2 [Callithrix jacchus] Length = 837 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|291408551|ref|XP_002720577.1| PREDICTED: SLIT and NTRK-like family, member 4-like [Oryctolagus cuniculus] Length = 837 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|301775378|ref|XP_002923110.1| PREDICTED: SLIT and NTRK-like protein 4-like [Ailuropoda melanoleuca] gi|281341910|gb|EFB17494.1| hypothetical protein PANDA_012193 [Ailuropoda melanoleuca] Length = 838 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|189054675|dbj|BAG37525.1| unnamed protein product [Homo sapiens] Length = 837 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894] Length = 350 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%) Query: 78 IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD L F G+ P V CT SR ++HGL ++ Sbjct: 96 VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148 >gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] Length = 658 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 34/162 (20%) Query: 48 DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKI 105 D V I+ +A G+K N+ L D K F+ + + P CT + Sbjct: 45 DEPVQIVDLANGEKLPSNVFYALTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMV 104 Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQ-----------------QSSDWSA-DDLSD 147 + LT + D + + L K + ++ +L + Sbjct: 105 KA-LTLGLPSSL---DMVGKALKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPE 160 Query: 148 -EQ------LQYAASDVVHLHALRLQFTE---KLQRLGRSDL 179 + +Y DV +R K++ L Sbjct: 161 HDMEKWETFKEYCKRDVEVEREIRNLLNRYETKVEEQKLWQL 202 >gi|149755313|ref|XP_001490259.1| PREDICTED: SLIT and NTRK-like family, member 4 [Equus caballus] Length = 838 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|157818931|ref|NP_001100417.1| hypothetical protein LOC302473 [Rattus norvegicus] gi|149031165|gb|EDL86185.1| rCG49911, isoform CRA_a [Rattus norvegicus] gi|149031166|gb|EDL86186.1| rCG49911, isoform CRA_a [Rattus norvegicus] Length = 836 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|109132520|ref|XP_001086080.1| PREDICTED: SLIT and NTRK-like family, member 4 isoform 1 [Macaca mulatta] gi|109132522|ref|XP_001086196.1| PREDICTED: SLIT and NTRK-like family, member 4 isoform 2 [Macaca mulatta] gi|109132524|ref|XP_001086308.1| PREDICTED: SLIT and NTRK-like family, member 4 isoform 3 [Macaca mulatta] Length = 837 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|76658759|ref|XP_609417.2| PREDICTED: slit homolog 3-like [Bos taurus] gi|297492548|ref|XP_002699658.1| PREDICTED: slit homolog 3-like [Bos taurus] gi|296471187|gb|DAA13302.1| slit homolog 3-like [Bos taurus] Length = 837 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|19584403|emb|CAD28493.1| hypothetical protein [Homo sapiens] Length = 689 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 68 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 122 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 123 DVRILPPSQLE 133 >gi|27436867|ref|NP_775101.1| SLIT and NTRK-like protein 4 precursor [Homo sapiens] gi|296080773|ref|NP_001171678.1| SLIT and NTRK-like protein 4 precursor [Homo sapiens] gi|296080775|ref|NP_001171679.1| SLIT and NTRK-like protein 4 precursor [Homo sapiens] gi|46396931|sp|Q8IW52|SLIK4_HUMAN RecName: Full=SLIT and NTRK-like protein 4; Flags: Precursor gi|26454889|gb|AAH40986.1| SLIT and NTRK-like family, member 4 [Homo sapiens] gi|57208500|emb|CAI41650.1| novel protein [Homo sapiens] gi|119598426|gb|EAW78020.1| SLIT and NTRK-like family, member 4 [Homo sapiens] gi|325463689|gb|ADZ15615.1| SLIT and NTRK-like family, member 4 [synthetic construct] Length = 837 Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%) Query: 81 YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140 D+ L ++ I + T ++ +G LKE + SD+ Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270 Query: 141 SADDLSDEQLQ 151 L QL+ Sbjct: 271 DVRILPPSQLE 281 >gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] Length = 891 Score = 34.6 bits (79), Expect = 9.7, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 4/115 (3%) Query: 19 YVDAIAVDTETLGLMPRRD-RLCIVQLSPGDGTVDIIRIAAGQ-KNAPNLVGMLVDEKRE 76 D + + E G D R + ++ DG + + + + G L D +R Sbjct: 327 GADPVGL--EVDGDTTPTDARARALAIATADGHAAWVGVDTLDADDEAAIAGWLADAERP 384 Query: 77 KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131 + H + + L V T IA+ L R + L D L + Sbjct: 385 VVLHDAKGQLHALAAQGWTVRGLVADTAIATYLVRPDQRAYDLADLSVRYLHREL 439 >gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187] gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26] gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293] gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus AH187] gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293] gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26] Length = 1433 Score = 34.6 bits (79), Expect = 9.7, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K++ I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 1433 Score = 34.2 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K++ I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9] Length = 493 Score = 34.2 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 50/164 (30%), Gaps = 41/164 (25%) Query: 21 DAIAVDTETLGLMPRRDRL---CIVQLS------------------------PGDGTVDI 53 + VD ET G RDR+ +V++S G + Sbjct: 5 PYVIVDLETTGGHITRDRITEIGLVEVSHGVTTRWSQLVNPGQPIPPFIEEMTGISDAMV 64 Query: 54 IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASR 108 + AP L+ L + I H RFD L F P+ CT SR Sbjct: 65 AEAPPFAELAPALLARL--NGKLLIAHNARFDYGFLKNEFRRLGLTFTTDPL-CTVKLSR 121 Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152 +H L + GI++ + L D + Y Sbjct: 122 RLYPQHAKHSLDSLIARH-GIDVPPGMR-----HRALGDAEAVY 159 >gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215] Length = 346 Score = 34.2 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%) Query: 78 IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD L F G+ P V CT SR ++HGL ++ Sbjct: 96 VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148 >gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147] Length = 405 Score = 34.2 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 4/53 (7%) Query: 78 IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD L F G P V CT SR+ ++HGL + Sbjct: 96 VAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRVLFPRESRHGLDALIARH 148 >gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1433 Score = 34.2 bits (78), Expect = 9.8, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K++ I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus thuringiensis serovar finitimus YBT-020] Length = 970 Score = 34.2 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K++ I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4] gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium extorquens DM4] Length = 297 Score = 34.2 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 38/140 (27%) Query: 21 DAIAVDTETLGLMPRRDRLC------------------IV---QL--SPGDGTVDIIRIA 57 +A+D ET RD C ++ QL SPG+ V I + Sbjct: 2 KVVAIDFETANER--RDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGI-LP 58 Query: 58 AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT-KIA 106 A ++AP ++ + + H FD+ VL + PV CT +IA Sbjct: 59 ADVRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIA 118 Query: 107 SRLTRTYTNQHGLKDNLKEL 126 R+ HGL L Sbjct: 119 RRVFPD-PAGHGLAKVAGRL 137 >gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1] gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1] Length = 1433 Score = 34.2 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K++ I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 >gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210] Length = 348 Score = 34.2 bits (78), Expect = 9.9, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%) Query: 78 IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126 + H FD L F G+ P V CT SR ++HGL ++ Sbjct: 96 VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148 >gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus W] gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereus W] gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 1433 Score = 34.2 bits (78), Expect = 10.0, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 78 IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132 + H FD+ + F PV T +R H L K++ I ++ Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558 Query: 133 KAQQS 137 + ++ Sbjct: 559 QHHRA 563 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.315 0.183 0.627 Lambda K H 0.267 0.0557 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,131,725,505 Number of Sequences: 14124377 Number of extensions: 278673016 Number of successful extensions: 577930 Number of sequences better than 10.0: 5376 Number of HSP's better than 10.0 without gapping: 3848 Number of HSP's successfully gapped in prelim test: 3302 Number of HSP's that attempted gapping in prelim test: 564248 Number of HSP's gapped (non-prelim): 8276 length of query: 207 length of database: 4,842,793,630 effective HSP length: 133 effective length of query: 74 effective length of database: 2,964,251,489 effective search space: 219354610186 effective search space used: 219354610186 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 79 (34.6 bits)