BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780636|ref|YP_003065049.1| ribonuclease D [Candidatus
Liberibacter asiaticus str. psy62]
         (207 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780636|ref|YP_003065049.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040313|gb|ACT57109.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62]
          Length = 207

 Score =  430 bits (1105), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ
Sbjct: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK
Sbjct: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA
Sbjct: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
           TSCCNFLMDRAELDLLGWENVDIFSHS
Sbjct: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207


>gi|315122172|ref|YP_004062661.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495574|gb|ADR52173.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 209

 Score =  353 bits (907), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 166/206 (80%), Positives = 183/206 (88%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MTTIRVH GDIP EC ARY   IAVDTETLGL+PRRDRLC+VQLSPGDGT DIIRIAA Q
Sbjct: 1   MTTIRVHNGDIPTECIARYTGPIAVDTETLGLIPRRDRLCVVQLSPGDGTADIIRIAAEQ 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           KNAPNLV ML +E +EKIFHY RFDIAVLFYTFGVRV+P+FCTKIASRLTRTY ++HGLK
Sbjct: 61  KNAPNLVTMLANETQEKIFHYARFDIAVLFYTFGVRVKPIFCTKIASRLTRTYIDRHGLK 120

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DNL+ELLG++ISK QQ SDWS DDLS EQLQYAASDVVHLHALR +F  KLQ LGRSD+A
Sbjct: 121 DNLRELLGVDISKKQQLSDWSEDDLSHEQLQYAASDVVHLHALREKFIAKLQSLGRSDVA 180

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
           ++C NFLM RAELDLLGW+N+DIFSH
Sbjct: 181 SACFNFLMSRAELDLLGWDNIDIFSH 206


>gi|332716830|ref|YP_004444296.1| Ribonuclease D [Agrobacterium sp. H13-3]
 gi|325063515|gb|ADY67205.1| Ribonuclease D [Agrobacterium sp. H13-3]
          Length = 208

 Score =  313 bits (801), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/205 (73%), Positives = 172/205 (83%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI A  AARY+ AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK 
Sbjct: 4   TIRYHEGDISAADAARYLGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D  R+KIFHYGRFDIAVLF+TFGV   PVFCTKIASRLTRTYT++HGLKDN
Sbjct: 64  APNLTHMLADPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLTRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKE+L ++ISKAQQSSDW+A+ LS  QL+YAASDV+HLHALR + T +L R GR D A +
Sbjct: 124 LKEMLEVDISKAQQSSDWAAEKLSPAQLEYAASDVLHLHALRDKLTHRLVRDGRLDHADA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGW+  DIF+HS
Sbjct: 184 CFAFLPTRAKLDLLGWDETDIFAHS 208


>gi|222147114|ref|YP_002548071.1| ribonuclease D [Agrobacterium vitis S4]
 gi|221734104|gb|ACM35067.1| ribonuclease D [Agrobacterium vitis S4]
          Length = 208

 Score =  312 bits (799), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 147/206 (71%), Positives = 173/206 (83%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           +TIR HEGDI +E AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIA GQ+
Sbjct: 3   STIRYHEGDISSEDAARYTRAIAIDTETLGLIPRRDRLCVVQLSPGDGTADVIRIAPGQR 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D  REKIFHYGRFDIAVLF+TFGV   PVFCTKIASRL+RTYT++HGLKD
Sbjct: 63  QAPNLTALLEDPTREKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L +++SKAQQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR D AT
Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLVRDGRMDHAT 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFEFLPTRAKLDLLGWEETDIFAHS 208


>gi|209551599|ref|YP_002283516.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537355|gb|ACI57290.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 208

 Score =  311 bits (796), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 172/205 (83%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI A  AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIA+GQK 
Sbjct: 4   TIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIASGQKE 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKDN
Sbjct: 64  APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTNPVFCTKIASRLIRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKE+L ++ISKAQQSSDW+A+ LS  QL+YAASDV++LHALR + TE+L R GR D AT+
Sbjct: 124 LKEMLDVDISKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTERLLRDGRFDHATA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFAFLPTRAKLDLLGWEEADIFAHS 208


>gi|222084303|ref|YP_002542832.1| RNAse D protein [Agrobacterium radiobacter K84]
 gi|221721751|gb|ACM24907.1| RNAse D protein [Agrobacterium radiobacter K84]
          Length = 208

 Score =  310 bits (793), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 170/205 (82%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI A  AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIA+GQ  
Sbjct: 4   TIRYHEGDISAADAARYTGAIAIDTETLGLIPRRDRLCVVQLSPGDGTADIIRIASGQSQ 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV ML D  R+KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKDN
Sbjct: 64  APNLVAMLADTTRQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKELL ++ISKAQQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR + A +
Sbjct: 124 LKELLEVDISKAQQSSDWAAEKLSPAQLEYAASDVLYLHALRDKLTARLVRDGRMEHAEA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFAFLPTRAKLDLLGWEEADIFAHS 208


>gi|86355756|ref|YP_467648.1| RNAse D protein [Rhizobium etli CFN 42]
 gi|86279858|gb|ABC88921.1| RNAse D protein [Rhizobium etli CFN 42]
          Length = 208

 Score =  309 bits (791), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 171/205 (83%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI A  AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK 
Sbjct: 4   TIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQKA 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKDN
Sbjct: 64  APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTNPVFCTKIASRLCRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKE+L +++SKAQQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR D AT+
Sbjct: 124 LKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHATA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFAFLPTRAKLDLLGWEEADIFAHS 208


>gi|195970213|ref|NP_384368.2| hypothetical protein SMc00342 [Sinorhizobium meliloti 1021]
 gi|307306427|ref|ZP_07586171.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C]
 gi|307319314|ref|ZP_07598743.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83]
 gi|187904130|emb|CAC41699.2| Probable ribonuclease D [Sinorhizobium meliloti 1021]
 gi|306895150|gb|EFN25907.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83]
 gi|306902269|gb|EFN32866.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C]
          Length = 208

 Score =  309 bits (791), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 170/205 (82%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI    AARY  AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRI+AGQK 
Sbjct: 4   TIRFHEGDISETDAARYTGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRISAGQKQ 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV ML D  R+KIFH+GRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKDN
Sbjct: 64  APNLVSMLADPTRQKIFHFGRFDIAVLFHTFGVTASPVFCTKIASRLARTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKELL I+ISK QQSSDW+AD LS  QL+YAASDV+HLHALR + T +L R GR +LA +
Sbjct: 124 LKELLDIDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLLRDGRMELAEA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFSFLPTRAKLDLLGWEEADIFAHS 208


>gi|218508865|ref|ZP_03506743.1| ribonuclease III protein [Rhizobium etli Brasil 5]
 gi|327190020|gb|EGE57137.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 208

 Score =  309 bits (791), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 147/205 (71%), Positives = 171/205 (83%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI A  AARY  A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK 
Sbjct: 4   TIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL+RTYT++HGLKDN
Sbjct: 64  APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKE+L ++ISK QQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR D AT+
Sbjct: 124 LKEMLDVDISKTQQSSDWAAETLSQAQLEYAASDVLYLHALRDKLTARLIRDGRFDHATA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFAFLPTRAKLDLLGWEEADIFAHS 208


>gi|218661189|ref|ZP_03517119.1| ribonuclease III protein [Rhizobium etli IE4771]
          Length = 208

 Score =  308 bits (790), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 170/205 (82%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI A  AARY  A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK 
Sbjct: 4   TIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKDN
Sbjct: 64  APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKE+L I+ISK QQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR D AT+
Sbjct: 124 LKEMLDIDISKTQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHATA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFEFLPTRAKLDLLGWEEADIFAHS 208


>gi|116249870|ref|YP_765708.1| ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254518|emb|CAK05592.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 208

 Score =  308 bits (789), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 170/205 (82%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI A   ARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK 
Sbjct: 4   TIRYHEGDISAADVARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQKE 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D   +KIFHYGRFDIAVLF+TF V   PVFCTKIASRL RTYT++HGLKDN
Sbjct: 64  APNLVALLEDPTHQKIFHYGRFDIAVLFHTFSVTTTPVFCTKIASRLIRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKE+L +++SKAQQSSDW+A+ LS  QL+YAASDV++LHALR + TE+L R GR D AT+
Sbjct: 124 LKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIRDGRYDHATA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFEFLPTRAKLDLLGWEEADIFAHS 208


>gi|150398650|ref|YP_001329117.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
 gi|150030165|gb|ABR62282.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
          Length = 208

 Score =  308 bits (789), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 170/205 (82%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI    AARY  AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRIAAGQK 
Sbjct: 4   TIRFHEGDISEADAARYRGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRIAAGQKQ 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV ML D  R+KIFH+GRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKDN
Sbjct: 64  APNLVAMLSDPARQKIFHFGRFDIAVLFHTFGVTASPVFCTKIASRLARTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKELL ++ISK QQSSDW+AD LS  QL+YAASDV+HLHALR + T +L R GR +LA +
Sbjct: 124 LKELLDVDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLLRDGRMELAEA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFSFLPTRAKLDLLGWEETDIFAHS 208


>gi|241207041|ref|YP_002978137.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860931|gb|ACS58598.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 208

 Score =  308 bits (788), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 171/205 (83%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI A  AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK 
Sbjct: 4   TIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQKE 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           A NLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKDN
Sbjct: 64  ARNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTATPVFCTKIASRLIRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKE+L +++SKAQQSSDW+A+ LS  QL+YAASDV++LHALR + TE+L R GR D AT+
Sbjct: 124 LKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIRDGRYDHATA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFEFLPTRAKLDLLGWEEADIFAHS 208


>gi|190889732|ref|YP_001976274.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|190695011|gb|ACE89096.1| ribonuclease III protein [Rhizobium etli CIAT 652]
          Length = 208

 Score =  308 bits (788), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 147/205 (71%), Positives = 170/205 (82%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI A  AARY  A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK 
Sbjct: 4   TIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL+RTYT++HGLKDN
Sbjct: 64  APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKE+L ++ISK QQSSDW A+ LS  QL+YAASDV++LHALR + T +L R GR D AT+
Sbjct: 124 LKEMLDVDISKTQQSSDWGAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHATA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFAFLPTRAKLDLLGWEEADIFAHS 208


>gi|218670593|ref|ZP_03520264.1| ribonuclease III protein [Rhizobium etli GR56]
          Length = 208

 Score =  306 bits (785), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 147/205 (71%), Positives = 169/205 (82%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI    AARY  A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK 
Sbjct: 4   TIRYHEGDISTADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKDN
Sbjct: 64  APNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKE+L I+ISK QQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR D AT+
Sbjct: 124 LKEMLDIDISKTQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHATA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFEFLPTRAKLDLLGWEEADIFAHS 208


>gi|15890866|ref|NP_356538.1| ribonuclease D [Agrobacterium tumefaciens str. C58]
 gi|15159163|gb|AAK89323.1| ribonuclease D [Agrobacterium tumefaciens str. C58]
          Length = 208

 Score =  305 bits (780), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 171/205 (83%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI AE AARY  AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRIAAGQK 
Sbjct: 4   TIRYHEGDISAEDAARYKGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRIAAGQKQ 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV ML D  R+KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKDN
Sbjct: 64  APNLVHMLADPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKE+L ++ISKAQQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR + A +
Sbjct: 124 LKEMLEVDISKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRIEHADA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGW+  DIF+HS
Sbjct: 184 CFAFLPTRAKLDLLGWDETDIFAHS 208


>gi|227824096|ref|YP_002828069.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234]
 gi|227343098|gb|ACP27316.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234]
          Length = 208

 Score =  297 bits (761), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 151/205 (73%), Positives = 171/205 (83%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR HEGDI A  AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK 
Sbjct: 4   TIRFHEGDISAADAARYAGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKE 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV ML D  R+KIFH+GRFDIAVLF+TFGV   PVFCTKIASRLTRTYT++HGLKDN
Sbjct: 64  APNLVRMLADPARQKIFHFGRFDIAVLFHTFGVTSTPVFCTKIASRLTRTYTDRHGLKDN 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           LKELL ++ISK QQSSDW+AD LS  QL+YAASDV+HLHALR + T +L R GR + A +
Sbjct: 124 LKELLDVDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLIRDGRMEHADA 183

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 184 CFAFLPTRAKLDLLGWEETDIFAHS 208


>gi|163757673|ref|ZP_02164762.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
 gi|162285175|gb|EDQ35457.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
          Length = 207

 Score =  290 bits (742), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 136/207 (65%), Positives = 163/207 (78%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IR H+GDI  +  ARY   IAVDTETLGL+PRRDRLC+VQLSPGDG+ D+I+IA GQ
Sbjct: 1   MADIRAHKGDISDQAMARYTGDIAVDTETLGLVPRRDRLCVVQLSPGDGSADVIQIAKGQ 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K APNLV +L D KR K+FHYGRFDIAVL+  FGV   PVFCTKIASRLTRTYT++HGLK
Sbjct: 61  KRAPNLVALLTDRKRRKLFHYGRFDIAVLYNAFGVTTEPVFCTKIASRLTRTYTDRHGLK 120

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  +ELL +++SK QQSSDW+A+ L+  QL+YAASDV+HLHAL  + TE+LQR  R   A
Sbjct: 121 DVTRELLEVDLSKQQQSSDWAAETLTPAQLEYAASDVLHLHALTAKLTERLQRDDREAHA 180

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDL+GWE  DIF+HS
Sbjct: 181 KACFEFLPTRAKLDLMGWEETDIFAHS 207


>gi|75674370|ref|YP_316791.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
 gi|74419240|gb|ABA03439.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
          Length = 206

 Score =  265 bits (676), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 125/205 (60%), Positives = 155/205 (75%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P +  ARY  + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ++
Sbjct: 2   TIRLHRGDLPHQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQRD 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL+ +L D    KIFH+ RFD+A L+  FGV  RPV+CTKIASRL RTYT++HGLKD 
Sbjct: 62  APNLIKLLKDPAIVKIFHFARFDLAALYNAFGVMPRPVYCTKIASRLIRTYTDRHGLKDL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL I++SK QQSSDW +  LSD QL YAASDV+HLHALR +    L R  RS LA +
Sbjct: 122 VRELLSIDLSKQQQSSDWGSPTLSDAQLAYAASDVLHLHALRDKLEATLAREDRSALAQA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GWE  DIF+HS
Sbjct: 182 CFEFLPSRAMLDLAGWETEDIFAHS 206


>gi|110636308|ref|YP_676516.1| 3'-5' exonuclease [Mesorhizobium sp. BNC1]
 gi|110287292|gb|ABG65351.1| 3'-5' exonuclease [Chelativorans sp. BNC1]
          Length = 205

 Score =  263 bits (673), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 128/206 (62%), Positives = 163/206 (79%), Gaps = 3/206 (1%)

Query: 3   TIRVHEGDIPAECAARY-VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           TIR H+ D+P    +RY VDA+A+DTETLGL P RDRLC+VQLSPGDGT D+++IAAGQ+
Sbjct: 2   TIRFHQYDLPD--LSRYDVDAVAIDTETLGLNPHRDRLCVVQLSPGDGTADVVQIAAGQR 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV +L + +  K+FHY RFDIAVL+++FGV   PVFCTKIASRLTRTYT++HGLKD
Sbjct: 60  RAPNLVALLRNRRITKLFHYARFDIAVLYHSFGVMPDPVFCTKIASRLTRTYTDRHGLKD 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
              ELL +N+SKAQQSSDW+A+ L+ EQL+YAASDV++LH L     ++L R GR+  A 
Sbjct: 120 ICYELLQVNLSKAQQSSDWAAEQLTPEQLEYAASDVLYLHRLADVLQQRLMRDGRAREAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDL+GW+  DIF+HS
Sbjct: 180 ACFKFLPTRAKLDLMGWDEQDIFAHS 205


>gi|118589455|ref|ZP_01546861.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
 gi|118438155|gb|EAV44790.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
          Length = 206

 Score =  262 bits (669), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/205 (59%), Positives = 156/205 (76%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+GD+P   A    +A+AVD+ETLGL P RDRLC+VQLSPGDG+ D+++IA GQ  
Sbjct: 2   TIRYHKGDLPDLKAYETANAVAVDSETLGLNPHRDRLCVVQLSPGDGSADVVQIARGQSE 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ++ D  + KIFH+ RFD+AVL +   +RV PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 62  APNLAALMTDTSKPKIFHFARFDVAVLQHYLNIRVSPVWCTKIASKLVRTYTDRHGLKDI 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG+ +SK QQSSDW+A+ LSD QL YAASDV+HLHAL+ +    L+R  R+ +A +
Sbjct: 122 TRELLGVELSKQQQSSDWAAETLSDAQLAYAASDVLHLHALKERLEMMLEREERTHIAEA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RAELDL GWE  DIF+HS
Sbjct: 182 CFDFLPTRAELDLKGWEENDIFAHS 206


>gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 206

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/207 (61%), Positives = 159/207 (76%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT IRVH+GD+P      +VDAIAVDTETLGL P RDRLC+VQLS GDGT DII+IA GQ
Sbjct: 1   MTEIRVHQGDLP-NLDNYHVDAIAVDTETLGLQPYRDRLCVVQLSSGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNLV +L D+   KIFH+GRFD+A+L +TFG+    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  NSAPNLVKLLEDKAITKIFHFGRFDLAILAHTFGIMPDVVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+ + LS  Q++YAASDV++LH L+  F  +L+R  R ++A
Sbjct: 120 EICSELLNVNISKQQQSSDWATETLSRAQIEYAASDVLYLHRLKSVFETRLKREERENVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDLLGW   DIF+HS
Sbjct: 180 KACFQFLPMRAKLDLLGWTETDIFAHS 206


>gi|328545553|ref|YP_004305662.1| 3'-5' exonuclease [polymorphum gilvum SL003B-26A1]
 gi|326415294|gb|ADZ72357.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1]
          Length = 206

 Score =  259 bits (663), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/205 (59%), Positives = 155/205 (75%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+ D+P   A     A+AVDTETLGL P RDRLC+VQLSPGDGT D+++IA GQ+ 
Sbjct: 2   TIRHHKTDLPDLSAYDAAQAVAVDTETLGLNPHRDRLCVVQLSPGDGTADVVQIARGQRA 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D  + KIFH+ RFD+AVL +  G+ V PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 62  APNLARLLTDPAKMKIFHFARFDLAVLRHNLGIEVAPVWCTKIASKLVRTYTDRHGLKDI 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG+++SK QQSSDW+A+ L+D QL YAASDV+HLHALR +    L+R  R+ LA +
Sbjct: 122 TRELLGVDLSKQQQSSDWAAETLTDAQLAYAASDVLHLHALREKLAAMLEREERTALARA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL+GWE  DIF+H+
Sbjct: 182 CYEFLPTRAALDLMGWEEQDIFAHT 206


>gi|163867544|ref|YP_001608743.1| hypothetical protein Btr_0277 [Bartonella tribocorum CIP 105476]
 gi|161017190|emb|CAK00748.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
          Length = 206

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/207 (62%), Positives = 159/207 (76%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P        DAIA+DTETLGL P RDRLC+VQ+SPGDGT DII+IA GQ
Sbjct: 1   MAEIRVHQGDLP-NLDNYKTDAIAIDTETLGLQPHRDRLCVVQISPGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           KNAPNLV +L D    KIFH+GRFD+A+L +TFGV    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  KNAPNLVKLLEDNAVTKIFHFGRFDLAILAHTFGVMPEAVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+A+ LS  Q++YAASDV++LH L+  F E+L+R  R  +A
Sbjct: 120 EICNELLNVNISKQQQSSDWAAETLSQAQIEYAASDVLYLHRLKAIFEERLRREERESVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDLLGW  VDIF+HS
Sbjct: 180 KACFQFLPMRAKLDLLGWSEVDIFAHS 206


>gi|319781433|ref|YP_004140909.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167321|gb|ADV10859.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 206

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/207 (60%), Positives = 158/207 (76%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IR H+ D+P + +   V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ
Sbjct: 1   MADIRFHKNDLP-DLSHYNVGAVAIDTETLGLNPHRDRLCVVQISPGDGSADVIQIAPGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K APNLV +L +    K+FHYGRFD+AVL+  FGV   PVFCTKIASRLTRTYT++HGLK
Sbjct: 60  KKAPNLVSLLRNRGVTKLFHYGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D   ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR     +L R GR+  A
Sbjct: 120 DICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLARDGRTKEA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDL+GW+  DIF+HS
Sbjct: 180 DACFRFLPTRAKLDLMGWDEEDIFAHS 206


>gi|254505241|ref|ZP_05117392.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
 gi|222441312|gb|EEE47991.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
          Length = 223

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/207 (57%), Positives = 155/207 (74%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           + TIR H+GD+P   A     A+AVD+ETLGL P RDRLC+VQLSPGDG+ D+++IA GQ
Sbjct: 17  VMTIRYHKGDLPDLSAYETASAVAVDSETLGLNPHRDRLCVVQLSPGDGSADVVQIARGQ 76

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             APNL  +  D  + KIFH+ RFD+AVL +  G+ V PV+CTKIAS+L RTYT++HGLK
Sbjct: 77  TEAPNLAALFTDAAKPKIFHFARFDVAVLRHYLGIHVTPVWCTKIASKLVRTYTDRHGLK 136

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  +ELLG+ +SK QQSSDW+A+ LSD QL YAASDV+HLH L+ +    L+R  R+++A
Sbjct: 137 DITRELLGVELSKQQQSSDWAAETLSDAQLAYAASDVLHLHDLKAKLEMMLEREERTNIA 196

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C +FL  RAELDL GWE  DIF+HS
Sbjct: 197 EACFSFLPVRAELDLKGWEENDIFAHS 223


>gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
 gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
          Length = 204

 Score =  258 bits (659), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 153/205 (74%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY  ++A+DTETLGL P RDRLC+VQLS GDGT D+++I AG  +
Sbjct: 2   TIRLHRGDLPD--LSRYTHSVAIDTETLGLNPHRDRLCVVQLSNGDGTADVVQIPAGHTD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    K+FH+ RFDIAVL + FGV  +P++CTKIAS+L RTYT++HGLKD 
Sbjct: 60  APNLKKLLADPMVTKLFHFARFDIAVLEHAFGVMTQPIYCTKIASKLVRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLG+ ISK QQSSDW A+ LS+ QL YAASDV+HLHALR +    L R  R DLA S
Sbjct: 120 VRELLGVEISKQQQSSDWGAEKLSEAQLTYAASDVLHLHALREKLDTMLARENRMDLAKS 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW+  DIF+HS
Sbjct: 180 CFEFLPTRARLDLQGWDETDIFAHS 204


>gi|239830972|ref|ZP_04679301.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823239|gb|EEQ94807.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 205

 Score =  258 bits (658), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 124/205 (60%), Positives = 157/205 (76%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+ D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHKNDLP-NLDHYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL +TFG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAHTFGTMPQPVFCTKIASKLTRTYTDRHGLKEL 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CNELLDVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRLERDGRAKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWPEDDIFAHS 205


>gi|13472866|ref|NP_104433.1| hypothetical protein mll3296 [Mesorhizobium loti MAFF303099]
 gi|14023613|dbj|BAB50219.1| mll3296 [Mesorhizobium loti MAFF303099]
          Length = 206

 Score =  257 bits (657), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 125/207 (60%), Positives = 158/207 (76%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IR H+ D+P + +   V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ
Sbjct: 1   MADIRFHKHDLP-DLSHYNVGAVAIDTETLGLNPHRDRLCLVQISPGDGSADVIQIAPGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K APNLV +L +    K+FH+GRFD+AVL+  FGV   PVFCTKIASRLTRTYT++HGLK
Sbjct: 60  KKAPNLVSLLRNRSVTKLFHFGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D   ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR     +L R GR+  A
Sbjct: 120 DICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLAREGRTKEA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDL+GW+  DIF+HS
Sbjct: 180 DACFRFLPTRAKLDLMGWDEEDIFAHS 206


>gi|17988111|ref|NP_540745.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
 gi|62289101|ref|YP_220894.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699039|ref|YP_413613.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148559185|ref|YP_001258158.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189023376|ref|YP_001934144.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225626663|ref|ZP_03784702.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225851660|ref|YP_002731893.1| hypothetical protein BMEA_A0127 [Brucella melitensis ATCC 23457]
 gi|237814593|ref|ZP_04593591.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|254690430|ref|ZP_05153684.1| hypothetical protein Babob68_09714 [Brucella abortus bv. 6 str.
           870]
 gi|254694918|ref|ZP_05156746.1| hypothetical protein Babob3T_09702 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696124|ref|ZP_05157952.1| hypothetical protein Babob28_00020 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700933|ref|ZP_05162761.1| hypothetical protein Bsuib55_08749 [Brucella suis bv. 5 str. 513]
 gi|254707182|ref|ZP_05169010.1| hypothetical protein BpinM_09468 [Brucella pinnipedialis
           M163/99/10]
 gi|254709273|ref|ZP_05171084.1| hypothetical protein BpinB_03206 [Brucella pinnipedialis B2/94]
 gi|254713304|ref|ZP_05175115.1| hypothetical protein BcetM6_08117 [Brucella ceti M644/93/1]
 gi|254716342|ref|ZP_05178153.1| hypothetical protein BcetM_07890 [Brucella ceti M13/05/1]
 gi|254731461|ref|ZP_05190039.1| hypothetical protein Babob42_09744 [Brucella abortus bv. 4 str.
           292]
 gi|256030796|ref|ZP_05444410.1| hypothetical protein BpinM2_09123 [Brucella pinnipedialis
           M292/94/1]
 gi|256045912|ref|ZP_05448786.1| hypothetical protein Bmelb1R_15494 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060264|ref|ZP_05450439.1| hypothetical protein Bneo5_07870 [Brucella neotomae 5K33]
 gi|256112626|ref|ZP_05453547.1| hypothetical protein Bmelb3E_08085 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256158817|ref|ZP_05456678.1| hypothetical protein BcetM4_08038 [Brucella ceti M490/95/1]
 gi|256254202|ref|ZP_05459738.1| hypothetical protein BcetB_07895 [Brucella ceti B1/94]
 gi|256258682|ref|ZP_05464218.1| hypothetical protein Babob9C_15316 [Brucella abortus bv. 9 str.
           C68]
 gi|256264829|ref|ZP_05467361.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|256368584|ref|YP_003106090.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260169700|ref|ZP_05756511.1| 3'-5' exonuclease family protein [Brucella sp. F5/99]
 gi|260546398|ref|ZP_05822138.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260563197|ref|ZP_05833683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260755977|ref|ZP_05868325.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260759201|ref|ZP_05871549.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260760489|ref|ZP_05872835.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884998|ref|ZP_05896612.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|261215252|ref|ZP_05929533.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|261218123|ref|ZP_05932404.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261221350|ref|ZP_05935631.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|261314663|ref|ZP_05953860.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261316779|ref|ZP_05955976.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261321030|ref|ZP_05960227.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261324237|ref|ZP_05963434.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261751448|ref|ZP_05995157.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|261759236|ref|ZP_06002945.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|265987850|ref|ZP_06100407.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|265992324|ref|ZP_06104881.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994066|ref|ZP_06106623.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|265997310|ref|ZP_06109867.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|294851524|ref|ZP_06792197.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297247517|ref|ZP_06931235.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306842591|ref|ZP_07475240.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|17983864|gb|AAL53009.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
 gi|62195233|gb|AAX73533.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615140|emb|CAJ10073.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148370442|gb|ABQ60421.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189018948|gb|ACD71670.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225618320|gb|EEH15363.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225640025|gb|ACN99938.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237789430|gb|EEP63640.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|255998742|gb|ACU47141.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260096505|gb|EEW80381.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260153213|gb|EEW88305.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260669519|gb|EEX56459.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260670924|gb|EEX57745.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676085|gb|EEX62906.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260874526|gb|EEX81595.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|260916859|gb|EEX83720.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|260919934|gb|EEX86587.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|260923212|gb|EEX89780.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261293720|gb|EEX97216.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261296002|gb|EEX99498.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261300217|gb|EEY03714.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261303689|gb|EEY07186.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261739220|gb|EEY27216.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|261741201|gb|EEY29127.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|262551778|gb|EEZ07768.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|262765047|gb|EEZ10968.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|263003390|gb|EEZ15683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095285|gb|EEZ18912.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|264660047|gb|EEZ30308.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|294820113|gb|EFG37112.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297174686|gb|EFH34033.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306287236|gb|EFM58724.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|326408140|gb|ADZ65205.1| 3'-5' exonuclease [Brucella melitensis M28]
 gi|326537851|gb|ADZ86066.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 205

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H  D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL + FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205


>gi|158425553|ref|YP_001526845.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158332442|dbj|BAF89927.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 206

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/207 (60%), Positives = 155/207 (74%), Gaps = 4/207 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-- 60
           TIR+H GD+P       V  +A+DTETLGL P RDRLC+VQLS GDGT D+++I AG   
Sbjct: 2   TIRLHRGDLPDSFQPAPV--VAIDTETLGLKPHRDRLCVVQLSNGDGTADVVQIPAGATA 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           ++APNLV ML D    K+FH+GRFDIAVL +TFGV   PVFCTKIASRLTRTYT++HGLK
Sbjct: 60  ESAPNLVRMLADPNVVKLFHFGRFDIAVLLHTFGVTTAPVFCTKIASRLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D ++ELLG+++SK QQSSDW+A +L+D QL YAASDV+HLHA + +    L R GR+ LA
Sbjct: 120 DLVRELLGVDLSKQQQSSDWAASELTDAQLAYAASDVLHLHACKEKLEAMLARDGRTALA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
             C  FL  RA LDL GW + DIF+HS
Sbjct: 180 AECFKFLPARAALDLAGWPDEDIFAHS 206


>gi|90420956|ref|ZP_01228860.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
 gi|90334734|gb|EAS48510.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
          Length = 205

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/205 (58%), Positives = 157/205 (76%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIRVH+GD+P    +RY   +A+DTETLGL  RRDRLC+VQLSPGDGT D+++IA GQ  
Sbjct: 2   TIRVHKGDLPD--ISRYTGPVAIDTETLGLDTRRDRLCVVQLSPGDGTADVVQIAKGQSE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APN+  +L D  + KIFHY RFD+A L++ FGV    +FCTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNITALLKDPAKTKIFHYARFDVAALYHAFGVMTDGIFCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +E++G++ISK QQSSDW+A+ LS  Q++YAASDV++LH +     ++L+R  R +LA +
Sbjct: 120 AREMVGVDISKQQQSSDWAAETLSQAQVEYAASDVLYLHDIMGGLYKRLEREDRMELAKA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDL GW++ DIFSHS
Sbjct: 180 CFTFLPTRAKLDLAGWDDEDIFSHS 204


>gi|260460457|ref|ZP_05808708.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
 gi|259033562|gb|EEW34822.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
          Length = 206

 Score =  256 bits (654), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/207 (60%), Positives = 157/207 (75%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IR H+ D+P +     V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ
Sbjct: 1   MADIRFHKHDLP-DLTHYNVGAVAIDTETLGLNPHRDRLCVVQISPGDGSADVIQIAPGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K APNLV +L +    K+FHYGRFD+AVL+  FGV   PVFCTKIASRLTRTYT++HGLK
Sbjct: 60  KKAPNLVSLLRNRGITKLFHYGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D   ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR   + +L R GR+  A
Sbjct: 120 DICFELLGVGLSKAQQSSDWAAEILSPEQLEYAASDVLYLHRLRDVLSGRLARDGRTKEA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDL+GW   DIF+HS
Sbjct: 180 DACFRFLPTRAKLDLMGWGEEDIFAHS 206


>gi|306844394|ref|ZP_07476984.1| 3'-5' exonuclease [Brucella sp. BO1]
 gi|306275207|gb|EFM56957.1| 3'-5' exonuclease [Brucella sp. BO1]
          Length = 205

 Score =  255 bits (652), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H  D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIDAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL + FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205


>gi|39933126|ref|NP_945402.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
 gi|39652751|emb|CAE25490.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
          Length = 204

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY  ++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 2   TIRLHRGDLPD--LSRYTHSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGATD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L+ TFGV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPAVVKIFHFARFDLAALYKTFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLGI++SK QQSSDW AD LSD QL YAASDV+HLHALR +    L R  R+DLA +
Sbjct: 120 VRELLGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDRLDTMLARENRTDLAAA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW   DIF+HS
Sbjct: 180 CFGFLPVRARLDLDGWSEEDIFAHS 204


>gi|153007480|ref|YP_001368695.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
 gi|151559368|gb|ABS12866.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
          Length = 205

 Score =  255 bits (651), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+ D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHKNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL   FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAQAFGTMPQPVFCTKIASKLTRTYTDRHGLKEL 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CNELLDVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRLERDGRAKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWPEDDIFAHS 205


>gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
 gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
          Length = 204

 Score =  255 bits (651), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY +++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 2   TIRLHRGDLPD--LSRYTNSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGATD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L+  FGV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPAVVKIFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLGI++SK QQSSDW AD LSD QL YAASDV+HLHALR +    L R  R+DLA +
Sbjct: 120 VRELLGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDKLDTMLARENRTDLAAA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW   DIF+HS
Sbjct: 180 CFGFLPIRARLDLDGWSEEDIFAHS 204


>gi|316931442|ref|YP_004106424.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
 gi|315599156|gb|ADU41691.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
          Length = 211

 Score =  254 bits (650), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY  ++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 9   TIRLHRGDLPD--LSRYTHSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPLGATD 66

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L+  FGV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 67  APNLKKLLGDPAVVKIFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 126

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLGI++SK QQSSDW A+ LSD QL YAASDV+HLHALR +    L R GR+DLA +
Sbjct: 127 VRELLGIDLSKQQQSSDWGAESLSDAQLAYAASDVLHLHALRDKLDTMLAREGRTDLAAA 186

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW   DIF+HS
Sbjct: 187 CFGFLPVRARLDLDGWSEEDIFAHS 211


>gi|319406582|emb|CBI80224.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 206

 Score =  254 bits (650), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 129/206 (62%), Positives = 160/206 (77%), Gaps = 1/206 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P       VD+IA+DTETLGL P RDRLC+VQLSPGDGT DII+IA GQ
Sbjct: 1   MAEIRVHQGDLP-NLDNYCVDSIAIDTETLGLQPHRDRLCVVQLSPGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNLV +L D+   KIFH+GRFD+A+L +TFGV    VFCTK+AS+LTRTYT++HGLK
Sbjct: 60  NSAPNLVTLLEDKTITKIFHFGRFDLAILAHTFGVMPDAVFCTKLASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+AD LS  Q++YAASDV++LH L+  F E+L+R  R D+A
Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C  FL  RA+LDLLGW  VDIF+H
Sbjct: 180 KACFQFLPVRAKLDLLGWSEVDIFAH 205


>gi|148251746|ref|YP_001236331.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
 gi|146403919|gb|ABQ32425.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
          Length = 204

 Score =  254 bits (650), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 155/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+R+H GD+P    +RY  ++A+DTET+GL P RDRLC+VQLSPGDG+ D+++I  G  +
Sbjct: 2   TVRLHRGDLPD--LSRYTSSVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L +    KIFH+ RFD+A LF+TFGV  +PV+CTKIASRL RTYT++HGLKD 
Sbjct: 60  APNLKALLANPAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL +++SK QQSSDW AD+LS+ QL YAASDV+HLHALR +    L R GR  LA +
Sbjct: 120 VRELLNVDLSKQQQSSDWGADNLSEPQLAYAASDVLHLHALREKLDVMLAREGRLGLAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL G+E  DIF+HS
Sbjct: 180 CFAFLPHRATLDLGGFEAEDIFAHS 204


>gi|254718341|ref|ZP_05180152.1| hypothetical protein Bru83_02133 [Brucella sp. 83/13]
 gi|265983300|ref|ZP_06096035.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306839563|ref|ZP_07472369.1| 3'-5' exonuclease [Brucella sp. NF 2653]
 gi|264661892|gb|EEZ32153.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306405349|gb|EFM61622.1| 3'-5' exonuclease [Brucella sp. NF 2653]
          Length = 205

 Score =  254 bits (649), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H  D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCMVQISPGDGTADVIQIEAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL   FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLANAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205


>gi|299133324|ref|ZP_07026519.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
 gi|298593461|gb|EFI53661.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
          Length = 204

 Score =  254 bits (649), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/205 (59%), Positives = 152/205 (74%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY  ++A+DTETLGL P RDRLC+VQLS GDG+ D+++I AG  +
Sbjct: 2   TIRLHRGDLPD--LSRYTHSVAIDTETLGLNPHRDRLCVVQLSNGDGSADVVQIPAGHTD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    K+FH+ RFDIAVL++ FGV  +PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPAITKLFHFARFDIAVLYHAFGVMAQPVYCTKIASKLVRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E+LG+ ISK QQSSDW A  LS+ QL YAASDV+HLHALR +    L R  R  LA +
Sbjct: 120 VREMLGVEISKQQQSSDWGAASLSEAQLSYAASDVLHLHALRDKLDAMLAREDREPLAKA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GWE  DIF+HS
Sbjct: 180 CFEFLPTRARLDLQGWEETDIFAHS 204


>gi|163842395|ref|YP_001626799.1| hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
 gi|163673118|gb|ABY37229.1| Hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
          Length = 205

 Score =  254 bits (648), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 122/205 (59%), Positives = 154/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H  D+P       V A+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHRNDLP-NLDNYQVAAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL + FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205


>gi|49473901|ref|YP_031943.1| ribonuclease d [Bartonella quintana str. Toulouse]
 gi|49239404|emb|CAF25742.1| Ribonuclease d [Bartonella quintana str. Toulouse]
          Length = 206

 Score =  253 bits (647), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 131/207 (63%), Positives = 161/207 (77%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P       +DA+AVDTETLGL P RDRLC+VQLS GDGT DII+IA GQ
Sbjct: 1   MKEIRVHQGDLP-NLDNYQIDAVAVDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K+APNLV +L D+   KIFH+GRFD+A+L YTFGV    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  KSAPNLVKLLKDKAITKIFHFGRFDLAILAYTFGVMPDVVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+A+ LS  Q++YAASDV++LH LR  F E+L+R  R ++A
Sbjct: 120 EICCELLNVNISKQQQSSDWAAEILSRAQIEYAASDVLYLHRLRDIFEERLKREERENVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDLLGW  VDIF+HS
Sbjct: 180 KACFQFLPMRAKLDLLGWSEVDIFAHS 206


>gi|23501034|ref|NP_697161.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161618108|ref|YP_001591995.1| hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|254705301|ref|ZP_05167129.1| hypothetical protein Bsuib36_15553 [Brucella suis bv. 3 str. 686]
 gi|260567236|ref|ZP_05837706.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261756011|ref|ZP_05999720.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
 gi|23346898|gb|AAN29076.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161334919|gb|ABX61224.1| Hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|260156754|gb|EEW91834.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261745764|gb|EEY33690.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
          Length = 205

 Score =  253 bits (647), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 122/205 (59%), Positives = 154/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H  D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I A QK 
Sbjct: 2   TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEADQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL + FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205


>gi|90421943|ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90103957|gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 204

 Score =  253 bits (647), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 119/205 (58%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 2   TIRLHRGDLPD--LSRYTDSVAIDTETMGLNPHRDRLCVVQLSNGDGSADVVQIPVGHSD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L+   GV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPAITKIFHFARFDLAALYNALGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E+LG+++SK QQSSDW A  LSD QL YAASDV+HLH LR +    L R GR++LA +
Sbjct: 120 VREVLGVDLSKQQQSSDWGAQSLSDAQLAYAASDVLHLHGLRTRLDAMLAREGRTELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDL GW   DIF+HS
Sbjct: 180 CFDFLPTRAKLDLSGWAEQDIFAHS 204


>gi|27375830|ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium japonicum USDA 110]
 gi|27348968|dbj|BAC45984.1| blr0719 [Bradyrhizobium japonicum USDA 110]
          Length = 204

 Score =  253 bits (647), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 117/205 (57%), Positives = 155/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+R+H GD+P    +RY  A+A+DTET+GL P RDRLC+VQLSPGDG+ D+++I  G  +
Sbjct: 2   TVRLHRGDLPD--LSRYTGAVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L +    KIFH+ RFD+AVL+ +FGV   P++CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKALLANPAITKIFHFARFDVAVLYQSFGVMTGPIYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E+L +++SK QQSSDW +D L++ QL YAASDV+HLHALR +    L R GR+ LA +
Sbjct: 120 VREVLNVDLSKQQQSSDWGSDSLTEPQLAYAASDVLHLHALRERLDAMLVREGRTGLAKA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA LDL GW   DIF+HS
Sbjct: 180 CFDFLPTRALLDLQGWAEEDIFAHS 204


>gi|85714031|ref|ZP_01045020.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
 gi|85699157|gb|EAQ37025.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
          Length = 206

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 152/205 (74%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P +  ARY  + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ +
Sbjct: 2   TIRLHRGDLPDQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQHD 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L   FGV  RPV+CTKIASRLTRTYT++HGLKD 
Sbjct: 62  APNLKKLLGDPAIVKIFHFARFDLAALHNAFGVMPRPVYCTKIASRLTRTYTDRHGLKDL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E L I++SK QQSSDW +  LSD QL YAASDV+HLHALR +    L R  R+ LA +
Sbjct: 122 VREALSIDLSKQQQSSDWGSLALSDAQLAYAASDVLHLHALRDKLDAMLAREDRTGLAQA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW+  DIF+HS
Sbjct: 182 CFEFLPARAMLDLSGWDAEDIFAHS 206


>gi|217976351|ref|YP_002360498.1| 3'-5' exonuclease [Methylocella silvestris BL2]
 gi|217501727|gb|ACK49136.1| 3'-5' exonuclease [Methylocella silvestris BL2]
          Length = 204

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/204 (59%), Positives = 153/204 (75%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H+GD+P   A  +  A+A+DTET+GL+P RDRLC+VQLS GDG+ D+++IA  Q  
Sbjct: 2   TIRLHKGDLPEGEA--FSGAVAIDTETMGLVPGRDRLCLVQLSRGDGSADLVQIAPAQTA 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D   EK+FH+ RFDIAVL+ TFGV   P++CTKIAS+L RTYT++HGLKD 
Sbjct: 60  APNLTRLLADPAVEKLFHFARFDIAVLYKTFGVMTGPIYCTKIASKLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLGI +SK QQSSDW  D LS+ QL YAASDV+HLHALR +    L+R GR  LA +
Sbjct: 120 ARELLGIELSKQQQSSDWGGDILSEAQLAYAASDVLHLHALRTKLDAMLEREGRRALAEA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA+LDL+GW + DIFSH
Sbjct: 180 SFAFLPTRAKLDLMGWGDSDIFSH 203


>gi|121602332|ref|YP_989471.1| 3'-5' exonuclease domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614509|gb|ABM45110.1| 3'-5' exonuclease domain protein [Bartonella bacilliformis KC583]
          Length = 206

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/207 (61%), Positives = 160/207 (77%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P       VDA+A+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ
Sbjct: 1   MIDIRVHQGDLP-NLDNYCVDAVAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNLV +L D+   KIFH+GRFD+A+L +TFG+    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  NSAPNLVKLLADKAITKIFHFGRFDLAILAHTFGIMPDAVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+A+ LS  Q++YAASDV++LH L+  F E+L+R  R D+A
Sbjct: 120 EICSELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKSVFEERLKREEREDVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDLLGW  +DIF+HS
Sbjct: 180 KACFQFLPVRAKLDLLGWPEIDIFAHS 206


>gi|304392222|ref|ZP_07374164.1| 3'-5' exonuclease [Ahrensia sp. R2A130]
 gi|303296451|gb|EFL90809.1| 3'-5' exonuclease [Ahrensia sp. R2A130]
          Length = 211

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H+ D+P    + Y D++A+DTETLGL PRRDRLC+VQLSPGDGT D+++I  GQ +
Sbjct: 9   TIRLHKNDLPD--LSNYSDSVAIDTETLGLRPRRDRLCVVQLSPGDGTADVVQIEKGQTS 66

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APN+  +LVD   +KI+HYGRFDIAVL++ FG      FCTKIASRLTRTYT++HGLK+ 
Sbjct: 67  APNIEKLLVDTNVQKIYHYGRFDIAVLYHAFGALSDNNFCTKIASRLTRTYTDRHGLKNL 126

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             EL+G+++SK QQSSDW+A++L+  Q  YAASDV+HLHALR    ++L R  R  LA  
Sbjct: 127 THELIGVDLSKVQQSSDWAAEELTKAQQAYAASDVLHLHALRDALLKRLAREDRQHLADE 186

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R  LDL GWE+ DIF+HS
Sbjct: 187 CFKFLPTRCLLDLAGWEDTDIFAHS 211


>gi|92115811|ref|YP_575540.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
 gi|91798705|gb|ABE61080.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
          Length = 206

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 150/205 (73%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P +   RY  + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ+ 
Sbjct: 2   TIRLHRGDLPDQDLKRYTHSAAIDTETMGLNPHRDRLCVVQMSPGDGSADVIQIAQGQRE 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L   FGV  +PV+CTKIASRL RTYT++HGLKD 
Sbjct: 62  APNLKQLLADPTIVKIFHFARFDLAALSNAFGVMPQPVYCTKIASRLIRTYTDRHGLKDL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL I +SK QQSSDW A  LSD QL YAASDV+HLHALR +    L R  R+ +A +
Sbjct: 122 VRELLNIELSKQQQSSDWGAQTLSDAQLAYAASDVLHLHALRDKLDAMLARENRTGMAQA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDL GW   DIF+H+
Sbjct: 182 CFEFLPTRAKLDLSGWGAEDIFAHA 206


>gi|146337290|ref|YP_001202338.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
 gi|146190096|emb|CAL74088.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
          Length = 204

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/205 (59%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+R+H GD+P    +RY  ++A+DTET+GL P RDRLC+VQLSPGDG+ D+++I  G  +
Sbjct: 2   TVRLHRGDLPD--LSRYTSSVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L +    KIFH+ RFD+A LF+TFGV  +PV+CTKIASRL RTYT++HGLKD 
Sbjct: 60  APNLKTLLGNTAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL I++SK QQSSDW AD LS+ QL YAASDV+HLHALR +    L R GR  LA +
Sbjct: 120 VRELLNIDLSKQQQSSDWGADSLSEPQLAYAASDVLHLHALREKLDVMLAREGRLALAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL G+E  DIF+HS
Sbjct: 180 CFAFLPHRATLDLGGFEADDIFAHS 204


>gi|240849913|ref|YP_002971302.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
 gi|240267036|gb|ACS50624.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
          Length = 206

 Score =  251 bits (642), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 126/207 (60%), Positives = 159/207 (76%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P        DAIA+DTETLGL P RDRLC+VQLS GDGT D+I+I+ GQ
Sbjct: 1   MAEIRVHQGDLP-NLDNYKTDAIAIDTETLGLQPHRDRLCVVQLSSGDGTADVIQISKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K+APNLV +L D    KIFH+GRFD+A+L +TFGV    +FCTKIAS+LTRTYT++HGLK
Sbjct: 60  KSAPNLVKLLGDNAVIKIFHFGRFDLAILAHTFGVMPEAIFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+A+ LS  Q++YAASDV++LH L++ F E+L+R  R  +A
Sbjct: 120 EICNELLNVNISKQQQSSDWAAETLSQAQIEYAASDVLYLHRLKVIFEERLRREERESVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDLLGW  VDIF+HS
Sbjct: 180 KACFQFLPMRAKLDLLGWAEVDIFAHS 206


>gi|319403664|emb|CBI77249.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 206

 Score =  251 bits (642), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/206 (62%), Positives = 159/206 (77%), Gaps = 1/206 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P       VD+IA+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ
Sbjct: 1   MAEIRVHQGDLP-NLDNYCVDSIAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNLV +L D+   KIFH+GRFD+A+L +TFGV    VFCTK+AS+LTRTYT++HGLK
Sbjct: 60  NSAPNLVTLLEDKTITKIFHFGRFDLAILAHTFGVMPDAVFCTKLASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+AD LS  Q++YAASDV++LH L+  F E+L+R  R D+A
Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C  FL  RA+LDLLGW  VDIF+H
Sbjct: 180 KACFQFLPVRAKLDLLGWSEVDIFAH 205


>gi|49475064|ref|YP_033105.1| ribonuclease d [Bartonella henselae str. Houston-1]
 gi|49237869|emb|CAF27065.1| Ribonuclease d [Bartonella henselae str. Houston-1]
          Length = 206

 Score =  251 bits (641), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 129/207 (62%), Positives = 160/207 (77%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT IRVH+GD+P     R +DA+AVDTETLGL P RDRLC+VQLS GDGT D+I+IA GQ
Sbjct: 1   MTEIRVHQGDLPNLDNYR-IDAVAVDTETLGLQPHRDRLCVVQLSSGDGTADVIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K+APNLV +L D    KIFH+GRFD+A+L +TFGV    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  KSAPNLVRLLSDRDITKIFHFGRFDLAILAHTFGVMPDVVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+A+ LS  Q++YAASDV++LH L+  F E+L+R  R  +A
Sbjct: 120 EICGELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKDIFEERLKREERESVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA LDLLGW  +DIF+HS
Sbjct: 180 KACFQFLPMRANLDLLGWSEIDIFAHS 206


>gi|114706944|ref|ZP_01439843.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
 gi|114537494|gb|EAU40619.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
          Length = 207

 Score =  250 bits (639), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 119/205 (58%), Positives = 149/205 (72%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIRVH+GD+P     RY   +A+DTETLGL   RDRLC+VQLSPGDGT D+++IA GQ  
Sbjct: 2   TIRVHKGDLPD--LDRYTGPVAIDTETLGLNTMRDRLCVVQLSPGDGTADVVQIAKGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APN+  +L D  + KIFHY RFD+A L++ FG     +FCTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNISALLADASKTKIFHYARFDVAALYHAFGAMTEGIFCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+G+++SK QQSSDW+ + LS  QL YAASDV++LH +     ++L+R  R DLA  
Sbjct: 120 ARELVGVDLSKQQQSSDWAVETLSPAQLDYAASDVLYLHDIMGALYKRLEREDRMDLARE 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R  LDL GWEN DIFSHS
Sbjct: 180 CFRFLPMRVRLDLAGWENEDIFSHS 204


>gi|182677567|ref|YP_001831713.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633450|gb|ACB94224.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 204

 Score =  250 bits (639), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 118/204 (57%), Positives = 154/204 (75%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +H+GD+P   +  +  ++AVDTETLGL+P RDRLC+VQLS GDG   +++I  GQ +A
Sbjct: 3   IHLHKGDLPENVS--FGRSVAVDTETLGLLPHRDRLCLVQLSGGDGQAHLVQIKPGQTHA 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P+L  +L+D    K+FHY RFDIAVL+ TFG    P++CTKIAS+LTRTYT++HGLKD  
Sbjct: 61  PHLERLLIDPNVTKLFHYARFDIAVLYKTFGTMTTPLYCTKIASKLTRTYTDRHGLKDLA 120

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +ELLG+++SK QQSSDW AD LSD QL YAASDV+HLHALR +    L+R  R++LA +C
Sbjct: 121 RELLGVDLSKQQQSSDWGADTLSDAQLTYAASDVLHLHALRTKLDGMLEREHRTELAQAC 180

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
            +FL  RA+LDL GW   DIFSH+
Sbjct: 181 FDFLPTRAKLDLAGWAETDIFSHA 204


>gi|296446798|ref|ZP_06888736.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
 gi|296255673|gb|EFH02762.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
          Length = 204

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/204 (60%), Positives = 150/204 (73%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H+GD+P    A     +A+DTETLGL P RDRLC+VQLS G+G  D++RIA GQ  
Sbjct: 2   TIRLHQGDLPD--GADLGPVVAIDTETLGLNPHRDRLCLVQLSGGNGDADLVRIAPGQTR 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L +    K+FH+GRFDIAV+  TFGV   PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  APNLEALLANPNVLKLFHFGRFDIAVMAKTFGVMAEPVYCTKIASKLIRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLG+ ISK QQSSDW AD LSD QL YAASDV++LHALR +    L R  R+DLA +
Sbjct: 120 VRELLGVEISKQQQSSDWGADTLSDAQLSYAASDVLYLHALREKLDVMLAREHRTDLAAA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL  RA LDL GW  +DIFSH
Sbjct: 180 CFAFLPMRARLDLAGWPEIDIFSH 203


>gi|319405135|emb|CBI78741.1| Ribonuclease D [Bartonella sp. AR 15-3]
          Length = 206

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/206 (61%), Positives = 158/206 (76%), Gaps = 1/206 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IR+H+GD+P       VD++A+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ
Sbjct: 1   MAEIRIHQGDLP-NLDNYCVDSVAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             APNLV +L D+K  KIFH+GRFD+A+L +TF V    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  NRAPNLVTLLEDKKITKIFHFGRFDLAILAHTFAVMPDVVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+AD LS  Q++YAASDV++LH L+  F E+L+R  R D+A
Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C  FL  RA+LDLLGW  VDIF+H
Sbjct: 180 KACFQFLPVRAKLDLLGWAEVDIFAH 205


>gi|298290361|ref|YP_003692300.1| 3'-5' exonuclease [Starkeya novella DSM 506]
 gi|296926872|gb|ADH87681.1| 3'-5' exonuclease [Starkeya novella DSM 506]
          Length = 210

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/209 (57%), Positives = 159/209 (76%), Gaps = 4/209 (1%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--AA 58
           +IR+H GD+   +         +A+DTETLGL P RDRLC+VQLSPGDGT D+++I   A
Sbjct: 2   SIRLHRGDLVDLSRYTPENAPFVAIDTETLGLNPHRDRLCVVQLSPGDGTADVVQIPAGA 61

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           G  +APNL  +L D +  K+FH+ RFD+AVL  TFG+ V PV+CTKIASRLTRTYT++HG
Sbjct: 62  GPGSAPNLEALLTDPRITKLFHFARFDVAVLGKTFGLTVAPVWCTKIASRLTRTYTDRHG 121

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           LK+ ++EL+G+++SK QQSSDW+A++LS+ QLQYAASDV++LHALR +    L R GR++
Sbjct: 122 LKELVRELIGVDLSKQQQSSDWAAEELSEAQLQYAASDVLYLHALREKLASMLARDGRTE 181

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSHS 207
           LA SC  FL  RA+LDL GW + DIF+HS
Sbjct: 182 LAQSCFEFLPTRAKLDLAGWPDEDIFAHS 210


>gi|91974656|ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
 gi|91681112|gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
          Length = 204

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 152/205 (74%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY +++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 2   TIRLHRGDLPD--LSRYTNSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGHSD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L+  FGV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPTVVKIFHFARFDLAALYNAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL +++SK QQSSDW A+ LSD QL YAASDV+HLH LR +    L R  R+DLA +
Sbjct: 120 VRELLNVDLSKQQQSSDWGAETLSDAQLAYAASDVLHLHGLREKLDAMLARENRTDLAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ LDL GW   DIF+HS
Sbjct: 180 CFGFLPHRSRLDLDGWSEEDIFAHS 204


>gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
 gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
          Length = 204

 Score =  247 bits (631), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 117/205 (57%), Positives = 152/205 (74%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G   
Sbjct: 2   TIRLHRGDLPD--LSRYTDSVAIDTETMGLNPHRDRLCVVQLSNGDGSADVVQIPLGHTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD++ L    GV  +P++CTKIASRL RTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPAVTKIFHFARFDLSALSNALGVMPQPIYCTKIASRLCRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E+LGI++SK QQSSDW A +L+D QL YAASDV+HLHALR +    L R GR+ +A +
Sbjct: 120 VREVLGIDLSKQQQSSDWGAQNLTDAQLAYAASDVLHLHALRARLDAMLAREGRTAMAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA LDL GW N DIF+HS
Sbjct: 180 CFDFLPTRAMLDLSGWNNEDIFAHS 204


>gi|86747785|ref|YP_484281.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
 gi|86570813|gb|ABD05370.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
          Length = 204

 Score =  246 bits (629), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 150/205 (73%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P     RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 2   TIRLHRGDLPD--LTRYNDSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGHSD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L    GV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPNILKIFHFARFDLAALSNALGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL +++SK QQSSDW AD LSD QL YAASDV+HLHALR +    L R  R++LA +
Sbjct: 120 VRELLNVDLSKQQQSSDWGADTLSDAQLAYAASDVLHLHALRDKLDAMLARENRTELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW   DIF+HS
Sbjct: 180 CFGFLPHRARLDLGGWSEEDIFAHS 204


>gi|154244026|ref|YP_001414984.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
 gi|154158111|gb|ABS65327.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
          Length = 206

 Score =  242 bits (618), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 151/207 (72%), Gaps = 4/207 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-- 60
           TIR+H GD+PA+  A  V  +A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G   
Sbjct: 2   TIRLHRGDLPADFVAAPV--VAIDTETMGLNPFRDRLCLVQLSNGDGSADLVQIPQGADA 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             APNL  +L D    K+FH+GRFDIAVL +TF V  +PV+CTKIASRL RTYT++HGLK
Sbjct: 60  TTAPNLTRLLADPAITKLFHFGRFDIAVLQHTFHVMPQPVWCTKIASRLVRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D L+E + ++ISK QQSSDW A DLSD QL YAASDV+HLHA++ +  E L R  R+ LA
Sbjct: 120 DLLRETINVDISKQQQSSDWGAKDLSDAQLAYAASDVLHLHAVKAKLEEMLARENRTGLA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA LDL GW   DIF+HS
Sbjct: 180 AACFAFLPARAALDLSGWAEEDIFAHS 206


>gi|307943000|ref|ZP_07658345.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
 gi|307773796|gb|EFO33012.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
          Length = 206

 Score =  241 bits (614), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 147/205 (71%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+ D+         DA+AVDTETLGL   RDRLC+VQLSPGDG+ D+++I  G   
Sbjct: 2   TIRFHKNDLSDLTHYVSCDAVAVDTETLGLNLLRDRLCVVQLSPGDGSADVVQIEKGMTA 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D  R KIFHY RFD+A+L    G+ V PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 62  APNLTALLSDPARTKIFHYARFDVAILRQNLGIHVDPVWCTKIASKLCRTYTDRHGLKDI 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG++ISK QQSSDW+A+ L+D QL YAASDV+HLHAL+ +    L+R  R+ LA +
Sbjct: 122 TRELLGVDISKQQQSSDWAAEQLTDAQLAYAASDVLHLHALKEKLEFMLRREERTHLAEA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
              FL  RAELDL GW   DIF+HS
Sbjct: 182 SFGFLPTRAELDLKGWGETDIFAHS 206


>gi|254470791|ref|ZP_05084194.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
 gi|211959933|gb|EEA95130.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
          Length = 206

 Score =  240 bits (613), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 148/205 (72%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+ D+P        DA+AVDTETLGL P RDRLC+VQLS GDG+ D+++I  GQ  
Sbjct: 2   TIRYHKNDLPDLSNYSSADAVAVDTETLGLNPHRDRLCVVQLSSGDGSADVVQIERGQLA 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +  D  + KIFH+ RFD+A+L     + V PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 62  APNLQALFEDASKPKIFHFARFDVAILKEYLDISVSPVWCTKIASKLVRTYTDRHGLKDI 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+G+++SK QQSSDW+A+ L+D QL YAASDV+HLH L+ +    L+R  R+++A  
Sbjct: 122 CRELIGVDLSKQQQSSDWAAEKLTDAQLAYAASDVLHLHKLKERLEFMLEREERTEIAQK 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDL GW   DIF+HS
Sbjct: 182 CFDFLPTRAQLDLAGWPETDIFAHS 206


>gi|323136907|ref|ZP_08071987.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
 gi|322397668|gb|EFY00190.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
          Length = 204

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/204 (57%), Positives = 148/204 (72%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H+GD+PA  A   +  +A+DTETLGL  RRDRLC+VQLS GDG  ++++IA GQ  
Sbjct: 2   TIRLHQGDLPAGVAVAPI--VAIDTETLGLNHRRDRLCVVQLSIGDGDAELVQIAKGQTQ 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           A NLV +LVD K  K+FH+ RFD+ +L  TFGV   PV+CTKIAS+LTRTYT++HGLKD 
Sbjct: 60  AENLVKLLVDPKVLKLFHFARFDMGILAKTFGVMPAPVYCTKIASKLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL G+ ISK QQSSDW A  L+D Q  YAASDV++LH L+ +    L R GR++LA +
Sbjct: 120 ARELAGVEISKQQQSSDWGAATLTDAQQAYAASDVLYLHQLKEKLDAMLAREGRTELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  R  LDL GW   DIFSH
Sbjct: 180 CFDFLPTRTRLDLAGWPESDIFSH 203


>gi|319898371|ref|YP_004158464.1| Ribonuclease D [Bartonella clarridgeiae 73]
 gi|319402335|emb|CBI75874.1| Ribonuclease D [Bartonella clarridgeiae 73]
          Length = 193

 Score =  238 bits (606), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 120/187 (64%), Positives = 148/187 (79%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           V++IA+DTETLGL P RDRLC+VQLS GDGT DII++A GQ  APNLV +L D+   KIF
Sbjct: 6   VNSIAIDTETLGLKPHRDRLCVVQLSSGDGTADIIQVAKGQNRAPNLVALLEDKAITKIF 65

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H+GRFD+A+L +TFGV    VFCTKIAS+LTRTYT++HGLK+   ELL INISK QQSSD
Sbjct: 66  HFGRFDLAILAHTFGVIPDVVFCTKIASKLTRTYTDRHGLKEICSELLNINISKQQQSSD 125

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199
           W+AD LS  Q++YAASDV++LH L+  F E+L+R  R D+A +C  FL  RA+LDLLGW 
Sbjct: 126 WAADALSRAQIEYAASDVLYLHRLKNIFEERLKREEREDIAKACFQFLPVRAKLDLLGWS 185

Query: 200 NVDIFSH 206
            VDIF+H
Sbjct: 186 EVDIFAH 192


>gi|188581677|ref|YP_001925122.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
 gi|179345175|gb|ACB80587.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
          Length = 209

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 150/206 (72%), Gaps = 2/206 (0%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + IR+H GD+P + A     AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I  G  
Sbjct: 6   SRIRLHRGDLPLDFAPGA--AIAIDTETLGLNPHRDRLCVVQISRGDGSADVVQIRPGDP 63

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +L D +  KIFH+ RFD+AVLF  FGV   PV+CTK+AS+L RTYT++HGLKD
Sbjct: 64  APERLKAVLADPQIVKIFHFARFDLAVLFKAFGVMPMPVYCTKVASKLARTYTDRHGLKD 123

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++EL+G+++SK QQSSDW A+ LS  Q+ YAASDV+HLHA R +    L R GR+++A 
Sbjct: 124 VVRELVGVDLSKQQQSSDWGAEALSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQ 183

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  RA+LDL GW  +DIF+H+
Sbjct: 184 ACFDFLPTRAKLDLAGWPEMDIFAHT 209


>gi|163851920|ref|YP_001639963.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
 gi|163663525|gb|ABY30892.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
          Length = 209

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 149/206 (72%), Gaps = 2/206 (0%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + IR+H GD+P + A     AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I  G  
Sbjct: 6   SRIRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDP 63

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L+ +L D    KIFH+ RFD+AVLF  FGV   PV+CTKIAS+L RTYT++HGLKD
Sbjct: 64  APERLMAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++EL+G+++SK QQSSDW A  LS  Q+ YAASDV+HLHA R +    L R GR+++A 
Sbjct: 124 VVRELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQ 183

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  R++LDL GW  +DIF+H+
Sbjct: 184 ACFDFLPTRSKLDLAGWPEIDIFAHA 209


>gi|170743378|ref|YP_001772033.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
 gi|168197652|gb|ACA19599.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
          Length = 204

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/203 (57%), Positives = 146/203 (71%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           R+H GD+P + A     AIAVDTETLGL P RDRLC+VQ+S GDG  D+++IA G     
Sbjct: 4   RLHRGDLPDDYAPG--PAIAVDTETLGLEPHRDRLCVVQISRGDGEADLVQIAKGGPEPV 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    KIFH+ RFD+AVLF+  GV   P++CTK+ASRL+RTYT++HGLKD ++
Sbjct: 62  VLKRVLTDPAVTKIFHFARFDLAVLFHRLGVMPGPIYCTKVASRLSRTYTDRHGLKDLVR 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELLGI ISK QQSSDW A+ LS  Q++YAASDV+HLHALR +    L R  R+ LA +C 
Sbjct: 122 ELLGIEISKQQQSSDWGAETLSPAQIEYAASDVLHLHALRAKLDAMLAREERTALAEACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
            FL  RA LDLLGW+ VDI +HS
Sbjct: 182 AFLPTRARLDLLGWDEVDILAHS 204


>gi|254561638|ref|YP_003068733.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
 gi|254268916|emb|CAX24877.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
          Length = 209

 Score =  234 bits (596), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 148/206 (71%), Gaps = 2/206 (0%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + IR+H GD+P + A     AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I  G  
Sbjct: 6   SRIRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDP 63

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +L D    KIFH+ RFD+AVLF  FGV   PV+CTKIAS+L RTYT++HGLKD
Sbjct: 64  APERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++EL+G+++SK QQSSDW A  LS  Q+ YAASDV+HLHA R +    L R GR+++A 
Sbjct: 124 VVRELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQ 183

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  R++LDL GW  +DIF+H+
Sbjct: 184 ACFDFLPTRSKLDLAGWPEIDIFAHA 209


>gi|126732863|ref|ZP_01748654.1| 3'-5' exonuclease [Sagittula stellata E-37]
 gi|126706639|gb|EBA05713.1| 3'-5' exonuclease [Sagittula stellata E-37]
          Length = 204

 Score =  234 bits (596), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/203 (54%), Positives = 146/203 (71%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           ++H+GD+P       V  +A+D ET+GL P RDRLC+VQLS GDG   ++++A GQ  AP
Sbjct: 4   QLHQGDLPDNLDLGPV--VAIDCETMGLHPHRDRLCVVQLSAGDGNAHLVQVARGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  +L D    K+FHYGRFDIA ++  FG    PV+CTKIASRL RTYT++HGLK+  +
Sbjct: 62  NLSRLLTDPDVLKLFHYGRFDIAAMYNAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELLG++ISK QQSSDW A+ L+D Q  YAASDV+HLH LR      L+R GR+++A +C 
Sbjct: 122 ELLGVDISKQQQSSDWGAETLTDAQKDYAASDVLHLHRLRTALNAMLEREGRTEIAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA+LDL GW + DIF+H+
Sbjct: 182 DFLPARAKLDLAGWPDTDIFAHA 204


>gi|240139043|ref|YP_002963518.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
 gi|240009015|gb|ACS40241.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
          Length = 209

 Score =  234 bits (596), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 148/206 (71%), Gaps = 2/206 (0%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + IR+H GD+P + A     AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I  G  
Sbjct: 6   SRIRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDP 63

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +L D    KIFH+ RFD+AVLF  FGV   PV+CTKIAS+L RTYT++HGLKD
Sbjct: 64  APERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++EL+G+++SK QQSSDW A  LS  Q+ YAASDV+HLHA R +    L R GR+++A 
Sbjct: 124 VVRELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQ 183

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  R++LDL GW  +DIF+H+
Sbjct: 184 ACFDFLPTRSKLDLAGWPEIDIFAHA 209


>gi|300021932|ref|YP_003754543.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523753|gb|ADJ22222.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
          Length = 205

 Score =  234 bits (596), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 114/205 (55%), Positives = 148/205 (72%), Gaps = 3/205 (1%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T I++H+GD+P      + + IA+DTET+GL P RDRLC+VQLS GDGT  +++      
Sbjct: 4   TKIKLHKGDLP--TGLTFPNGIAIDTETMGLNPHRDRLCLVQLSGGDGTAHLVKFDGKSY 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +APNL  +L D K  KIFH+ RFD+AVL +  GV   P++CTKIAS+L RTYT++HGLKD
Sbjct: 62  DAPNLKALLADPKSLKIFHFARFDVAVLEHYLGVVTSPIYCTKIASKLARTYTDRHGLKD 121

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            + E+LGI ISK QQSSDW A +LSD Q  YAA+DV+HLHAL+ +  E L R GR DLA 
Sbjct: 122 LVGEILGIEISKQQQSSDWGAAELSDSQRSYAANDVLHLHALKTRLDEMLARTGRQDLAK 181

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +   FL  RA+LDLLG+E+ DIF+H
Sbjct: 182 AAFGFLPIRAKLDLLGFED-DIFAH 205


>gi|21328703|gb|AAM48709.1| 3'- 5' exonuclease family protein [uncultured marine
           proteobacterium]
          Length = 204

 Score =  234 bits (596), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 115/205 (56%), Positives = 149/205 (72%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  V++GD+P       +  +A+D ET+GL P+RDRLC+VQLS GDG   ++++A GQ  
Sbjct: 2   TNHVYKGDLPDGLELGPI--VAIDCETMGLNPKRDRLCVVQLSSGDGHAHLVQVAKGQTA 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D    K+FH+GRFDIA +   FG    PV+CTKIASR+TRTYT++HGLK+ 
Sbjct: 60  APNLCRMLEDPNVLKLFHFGRFDIAAMKEAFGALTAPVYCTKIASRMTRTYTDRHGLKNL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L+ELL ++ISK QQSSDW A DL+  Q++YAASDV++LHALR +  E L R GR +LA S
Sbjct: 120 LQELLCVDISKQQQSSDWGAADLTKAQVEYAASDVLYLHALRERLNEMLIREGRMELAQS 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RAELDL GW + DIF+HS
Sbjct: 180 CFDFLPTRAELDLAGWPDSDIFAHS 204


>gi|84500657|ref|ZP_00998906.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
 gi|84391610|gb|EAQ03942.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
          Length = 204

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/185 (57%), Positives = 141/185 (76%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQ+S GDG   I+++A GQ +APNL  ML D K  K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCVVQMSGGDGDAHIVQVAIGQDSAPNLCAMLTDPKVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA ++  FG    PV+CTKIASRL RTYT++HGLK+  +ELLGI++SK QQSSDW A
Sbjct: 80  RFDIAAMYNAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQELLGIDLSKQQQSSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           ++LS  QL+YAASDV++LH LR +   +L R GR+++A +C +FL  RA LDL+GW   D
Sbjct: 140 EELSAAQLEYAASDVLYLHRLREELDARLAREGRTEIAQACFDFLPVRARLDLMGWPETD 199

Query: 203 IFSHS 207
           IF+HS
Sbjct: 200 IFAHS 204


>gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
 gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
          Length = 207

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/205 (55%), Positives = 144/205 (70%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+R+H GD+PA   A    A+A+DTETLGL P RDRLC+VQLS GDGT D+++I      
Sbjct: 5   TVRLHRGDLPASYDAGR--AVAIDTETLGLNPHRDRLCVVQLSTGDGTADVVQIPQAGPE 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L D    KIFH+ RFD+AVL+   GV   PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 63  PVVLKRVLADPGILKIFHFARFDVAVLYRALGVMPSPVYCTKIASKLARTYTDRHGLKDV 122

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++EL+G+++SK QQSSDW A+ LS  QL YAASDV+HLHA R +    L R GR+DLA +
Sbjct: 123 VRELVGVDLSKQQQSSDWGAETLSQAQLDYAASDVLHLHAARERLDAMLAREGRTDLAAA 182

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW   DIF+H+
Sbjct: 183 CFGFLPTRARLDLDGWPETDIFAHT 207


>gi|119385336|ref|YP_916392.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
 gi|119375103|gb|ABL70696.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
          Length = 204

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 117/206 (56%), Positives = 152/206 (73%), Gaps = 5/206 (2%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI ++  D+P +     V  +A+DTET+GL PRRDRLC+VQLS GDG   +++IA GQ+ 
Sbjct: 2   TITLYRNDLPDDLDLGPV--VAIDTETMGLDPRRDRLCLVQLSSGDGNAHLVQIAKGQRE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D K  K+FH+GRFDIA L   FGV  +PV+CTKIAS++ RTYT++HGLK  
Sbjct: 60  APNLARMLADPKVLKLFHFGRFDIAALEAAFGVVTKPVWCTKIASKMVRTYTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G++ISK QQ+SDW A +LS+ QL+YAASDV++LHAL+ +  ++L R GR  LA +
Sbjct: 120 LSELVGVDISKQQQTSDWGAAELSEAQLEYAASDVLYLHALKAELEKRLAREGRLGLAQA 179

Query: 183 CCNFLMDRAELDLLGW--ENVDIFSH 206
           C +FL  RA LDLLGW  EN DIF H
Sbjct: 180 CFDFLPARAHLDLLGWGDEN-DIFHH 204


>gi|23009303|ref|ZP_00050402.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 209

 Score =  231 bits (589), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 111/206 (53%), Positives = 146/206 (70%), Gaps = 2/206 (0%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + IR+H GD+P +   +   AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I  G  
Sbjct: 6   SRIRLHRGDLPPDF--QPGSAIAIDTETLGLNPHRDRLCVVQISRGDGSADVVQIRPGDP 63

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +L D    KIFH+ RFD+AVLF   GV   PV+CTK+AS+L RTYT++HGLKD
Sbjct: 64  EPVRLKAILADPGVLKIFHFARFDLAVLFRALGVMPAPVYCTKVASKLARTYTDRHGLKD 123

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++EL+G+++SK QQSSDW A+ LS  Q+ YAASDV+HLHA R +    L R GRS++A 
Sbjct: 124 VVRELVGVDLSKQQQSSDWGAETLSQAQIDYAASDVLHLHAARERLDLMLAREGRSEMAR 183

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  RA LDL GW   DIF+HS
Sbjct: 184 ACFDFLPTRARLDLAGWPETDIFAHS 209


>gi|254466427|ref|ZP_05079838.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
 gi|206687335|gb|EDZ47817.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
          Length = 204

 Score =  231 bits (588), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 139/185 (75%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC++Q+S GDG   I+++  GQ  APNL  ML D    K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCVIQMSGGDGNAHIVQVEKGQTEAPNLCRMLEDPNVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +++ FG    PV+CTKIASRL RTYT++HGLK+  +ELLGI+ISK QQ SDW A
Sbjct: 80  RFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQELLGIDISKQQQMSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           ++L++ QL YAASDV+HLH LR    ++L R GRS++A +C +FL  RA+LDL GW  +D
Sbjct: 140 EELTEAQLDYAASDVLHLHKLREALDKRLAREGRSEMAQACFDFLPMRAKLDLAGWPEID 199

Query: 203 IFSHS 207
           IF+HS
Sbjct: 200 IFAHS 204


>gi|197103637|ref|YP_002129014.1| ribonuclease D [Phenylobacterium zucineum HLK1]
 gi|196477057|gb|ACG76585.1| ribonuclease D [Phenylobacterium zucineum HLK1]
          Length = 205

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 115/207 (55%), Positives = 150/207 (72%), Gaps = 2/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MTT  VHEGD+PA+  A    ++A+D+ET+GL   RD LC+VQLS G G   ++++    
Sbjct: 1   MTTF-VHEGDLPADVLAS-ASSVAIDSETMGLRLGRDPLCVVQLSDGGGDAHLVKLDRTT 58

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNL  +L D    KIFH+GRFDIA+ +   GV   PV+CTKIAS++ RTYT++HGLK
Sbjct: 59  YDAPNLKRLLTDPAVTKIFHFGRFDIAMFWLHLGVLTAPVYCTKIASKIARTYTDRHGLK 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  KELLG+++SKAQQSSDW A  LSDEQ+ YAASDV+HLHAL+ +  + L R GR  LA
Sbjct: 119 DISKELLGVDMSKAQQSSDWGAGKLSDEQVAYAASDVLHLHALKDRLQQMLVREGRDSLA 178

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C +FL  RA LD+ GWE+VDIF+HS
Sbjct: 179 QACFDFLPHRAVLDVAGWEDVDIFAHS 205


>gi|126738420|ref|ZP_01754125.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
 gi|126720219|gb|EBA16925.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
          Length = 204

 Score =  230 bits (587), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 147/202 (72%), Gaps = 2/202 (0%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +++ D+P +     V  +A+D ET+GL P RDRLC++Q+S GDG   II++A GQ  APN
Sbjct: 5   LYQNDLPDDLKLGPV--VAIDCETMGLNPHRDRLCVIQMSDGDGNAHIIQVAKGQSEAPN 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D +  K+FH+GRFDIA ++  FG    PV+CTKIASRL RTYT++HGLK+  +E
Sbjct: 63  LCRLLEDPETLKLFHFGRFDIAAMYNAFGALSAPVYCTKIASRLVRTYTDRHGLKNLTQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           LLGI+ISK QQ SDW A+ L+D QL YAASDV+HLH LR    ++L+R GR+++A +C +
Sbjct: 123 LLGIDISKQQQMSDWGAEILTDAQLDYAASDVLHLHKLRKALNKRLEREGRTEMAQACFD 182

Query: 186 FLMDRAELDLLGWENVDIFSHS 207
           FL  RA+LDL GW   DIF+HS
Sbjct: 183 FLPMRAKLDLAGWPETDIFAHS 204


>gi|254476761|ref|ZP_05090147.1| 3'-5' exonuclease [Ruegeria sp. R11]
 gi|214031004|gb|EEB71839.1| 3'-5' exonuclease [Ruegeria sp. R11]
          Length = 204

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 137/185 (74%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC++Q+S GDG   I+++A GQ  APNL  ML D    K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCVIQMSGGDGNAHIVQVAKGQTEAPNLCRMLEDPNVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +++ FG    PV+CTKIASRL RTYT++HGLK+  +EL+G++ISK QQ SDW A
Sbjct: 80  RFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQELIGVDISKQQQMSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
             LSD QL YAASDV+HLH LR    ++L R GR+++A +C +FL  RA+LDL GW   D
Sbjct: 140 AQLSDAQLDYAASDVLHLHRLRAALDKRLDREGRTEMAQACFDFLPMRAKLDLAGWPETD 199

Query: 203 IFSHS 207
           IF+HS
Sbjct: 200 IFAHS 204


>gi|163738084|ref|ZP_02145500.1| exonuclease, putative [Phaeobacter gallaeciensis BS107]
 gi|161388700|gb|EDQ13053.1| exonuclease, putative [Phaeobacter gallaeciensis BS107]
          Length = 204

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/185 (57%), Positives = 137/185 (74%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQLS GDG   +++IA GQ  APNL  ML D    K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCVVQLSGGDGNAHMVQIAKGQSEAPNLCAMLEDPNVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +++ FG    PV+CTKIASRL RTYT++HGL++  +EL+G++ISK QQ SDW A
Sbjct: 80  RFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLRNLTQELIGVDISKQQQMSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
             LSD QL YAASDV+HLH LR    ++L R  RS++A +C +FL  RA+LDL GW + D
Sbjct: 140 AQLSDAQLDYAASDVLHLHRLRAALDKRLDREDRSEMAQACFDFLPMRAKLDLAGWSDTD 199

Query: 203 IFSHS 207
           IF+HS
Sbjct: 200 IFAHS 204


>gi|294675670|ref|YP_003576285.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
 gi|294474490|gb|ADE83878.1| ribonuclease D-1 [Rhodobacter capsulatus SB 1003]
          Length = 204

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/205 (53%), Positives = 147/205 (71%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H+ D+P       V  +A+DTET+GL PRRDRLC+VQ+S GDG   +++IA GQ  
Sbjct: 2   TIHLHQNDLPEGLDLGPV--VAIDTETMGLDPRRDRLCLVQMSSGDGHAHLVQIAKGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           AP L  ML D K EK+FH+ RFDIA L+  FGV   PVFCTKIAS++ RT+T++HGLK  
Sbjct: 60  APRLCAMLADPKVEKLFHFARFDIAALYNAFGVVTAPVFCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L++L+G+++SK QQ+SDW A +L+  QL YAASDV++LH L+     +L R GR++LA +
Sbjct: 120 LQDLVGVDVSKQQQTSDWGAAELTAAQLDYAASDVLYLHQLKAALVTRLAREGRTELAQA 179

Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206
           C +FL  RA LDL+GWE   DIF H
Sbjct: 180 CFDFLPARARLDLMGWEEPNDIFHH 204


>gi|163742520|ref|ZP_02149906.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10]
 gi|161384105|gb|EDQ08488.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10]
          Length = 226

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/185 (57%), Positives = 137/185 (74%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQLS GDG   +++IA GQ  APNL  ML D    K+FH+G
Sbjct: 42  VAIDCETMGLNPHRDRLCVVQLSGGDGNAHMVQIAKGQSEAPNLCAMLEDLNVLKLFHFG 101

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +++ FG    PV+CTKIASRL RTYT++HGL++  +EL+G++ISK QQ SDW A
Sbjct: 102 RFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLRNLTQELIGVDISKQQQMSDWGA 161

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
             LSD QL YAASDV+HLH LR    ++L R  RS++A +C +FL  RA+LDL GW + D
Sbjct: 162 AQLSDAQLDYAASDVLHLHRLRAALDKRLDREDRSEMAQACFDFLPMRAKLDLAGWSDTD 221

Query: 203 IFSHS 207
           IF+HS
Sbjct: 222 IFAHS 226


>gi|159046129|ref|YP_001534923.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
 gi|157913889|gb|ABV95322.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
          Length = 203

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 113/204 (55%), Positives = 141/204 (69%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  +H  D+P       V  +A+DTET+GL+P RDRLC+VQLS GDG   +++IA GQ  
Sbjct: 2   TNHLHSHDLPDGLDLGPV--VAIDTETMGLVPARDRLCVVQLSSGDGDAHMVQIAQGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D K  K+FHY RFD+A L   FGVR  P++CTKIAS+L RTYT++HGLK  
Sbjct: 60  APNLTRMLTDPKVLKLFHYARFDVAALENAFGVRTAPIYCTKIASKLVRTYTDRHGLKAL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L E+LG+++SKAQQSSDW A  LS  QL YAASDV++LH L+      L R GR++LA +
Sbjct: 120 LSEVLGVDVSKAQQSSDWGAPTLSAAQLDYAASDVLYLHRLKEALDGMLAREGRTELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL  RA LDL GW  +DIF H
Sbjct: 180 CFEFLPTRARLDLGGWSEIDIFHH 203


>gi|99079868|ref|YP_612022.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
 gi|99036148|gb|ABF62760.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
          Length = 204

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/185 (57%), Positives = 137/185 (74%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQ+S GDG   +++IA GQ +APNL  ML +    K+FHYG
Sbjct: 20  VAIDCETMGLNPHRDRLCVVQMSSGDGDAHLVQIAKGQTDAPNLTAMLTNPDVLKLFHYG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA L++ FG    PV+CTKIASRL RTYT++HGLK+  ++LLG +ISK QQ SDW A
Sbjct: 80  RFDIAALYHRFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQDLLGQDISKQQQMSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           + L+  Q+ YAASDV+HLH LR    ++L R GRSDLA +C +FL  RA LDL GW + D
Sbjct: 140 ETLTRAQMDYAASDVLHLHRLRDALDQRLVREGRSDLAQACFDFLPTRARLDLAGWPDTD 199

Query: 203 IFSHS 207
           IF+HS
Sbjct: 200 IFAHS 204


>gi|110677766|ref|YP_680773.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453882|gb|ABG30087.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 248

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/185 (57%), Positives = 137/185 (74%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQLS GDG   +I+IA GQ  APNL  +L D K  K+FH+G
Sbjct: 64  VAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTEAPNLCKLLEDPKVLKLFHFG 123

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +   FG    PV+CTKIASRL RTYT++HGL   L+ELL I+ISK QQSSDW A
Sbjct: 124 RFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKLLQELLAIDISKQQQSSDWGA 183

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           + L+D Q++YAASDV++LH LR    + L+R GR + A +C +FL  RA+LDL+GW + D
Sbjct: 184 ETLTDAQIEYAASDVLYLHQLREALNKMLEREGRMETAQACFDFLPMRAKLDLMGWPDTD 243

Query: 203 IFSHS 207
           IF+HS
Sbjct: 244 IFAHS 248


>gi|56695010|ref|YP_165357.1| exonuclease, putative [Ruegeria pomeroyi DSS-3]
 gi|56676747|gb|AAV93413.1| exonuclease, putative [Ruegeria pomeroyi DSS-3]
          Length = 204

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 106/185 (57%), Positives = 137/185 (74%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC++Q+S GDG   I+++  GQ  APNL  ML + +  K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCVIQMSGGDGNTHIVQVEKGQTAAPNLCAMLENPEVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA L++ FG    PV+CTKIASRL RTYT++HGLK+  +ELLG++ISK QQ SDW A
Sbjct: 80  RFDIAALYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLCQELLGVDISKQQQMSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           + LS+ QL YAASDV++LH LR     +L R GR+DLA SC +FL  RA LDL+GW   D
Sbjct: 140 ETLSEAQLDYAASDVLYLHRLREALDGRLAREGRADLAQSCFDFLPTRARLDLVGWPETD 199

Query: 203 IFSHS 207
           IF+HS
Sbjct: 200 IFAHS 204


>gi|73667429|ref|YP_303445.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394570|gb|AAZ68847.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 216

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/204 (53%), Positives = 145/204 (71%), Gaps = 3/204 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           + VH+ D+P      + DA+A+DTET+GL+ RRDRLC+VQL+   G V +++ + G   A
Sbjct: 15  VFVHDCDLPN--GLNFEDAVAIDTETMGLVCRRDRLCLVQLADSSGNVHLVKFS-GNYQA 71

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNLV +L D    KIFH+ RFDIAV+ Y  G+   P +CTKIAS+L RTYT+ HGLK+  
Sbjct: 72  PNLVSVLSDPNIIKIFHFARFDIAVMRYYLGMWANPCYCTKIASKLVRTYTDHHGLKELC 131

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELLG+ ++K QQSSDW  + L+ EQL YAASDV++LHAL+ +    LQR  + +LA +C
Sbjct: 132 YELLGVKLNKMQQSSDWGRESLTSEQLNYAASDVIYLHALKSKLDAMLQRENKRELAAAC 191

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
             FL  RA+LDLLGWENVDIFSHS
Sbjct: 192 FKFLQTRAQLDLLGWENVDIFSHS 215


>gi|218530671|ref|YP_002421487.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
 gi|218522974|gb|ACK83559.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
          Length = 209

 Score =  228 bits (580), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 146/206 (70%), Gaps = 2/206 (0%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + IR+H  D+P + A     AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I     
Sbjct: 6   SRIRLHHCDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPSDP 63

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +L D    KIFH+ RFD+AVLF  FGV   PV+CTKIAS+L RTYT++HGLKD
Sbjct: 64  APERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKD 123

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++EL+G+++SK QQSSDW A  LS  Q+ YAASDV+HLHA R +    L R GR+++A 
Sbjct: 124 VVRELVGVDLSKQQQSSDWGAATLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQ 183

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  R++LDL GW  +DIF+H+
Sbjct: 184 ACFDFLPTRSKLDLAGWPEIDIFAHA 209


>gi|220925751|ref|YP_002501053.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
 gi|219950358|gb|ACL60750.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
          Length = 204

 Score =  227 bits (579), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 115/205 (56%), Positives = 144/205 (70%), Gaps = 6/205 (2%)

Query: 5   RVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           R+H GD+P +    YV   AIAVDTETLGL P RDRLC+VQ+S GDG  D+++I      
Sbjct: 4   RLHCGDLPDD----YVPGPAIAVDTETLGLEPHRDRLCVVQISHGDGEADVVQIPKIGPE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L D    KIFHY RFD+AVL++  GV   PV+CTK+ASRL RTYT++HGLKD 
Sbjct: 60  PVVLKRVLTDPAVTKIFHYARFDLAVLYHRLGVMPGPVYCTKVASRLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLG+ +SK QQSSDW AD L+  Q+ YAASDV+HLHALR +    L R  R+D+A +
Sbjct: 120 VRELLGVELSKQQQSSDWGADTLTPAQIDYAASDVLHLHALRAKLDAMLAREERTDMAEA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDLLGW+ VDI +HS
Sbjct: 180 CFAFLPTRARLDLLGWDEVDILAHS 204


>gi|86136835|ref|ZP_01055413.1| exonuclease, putative [Roseobacter sp. MED193]
 gi|85826159|gb|EAQ46356.1| exonuclease, putative [Roseobacter sp. MED193]
          Length = 204

 Score =  227 bits (579), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 146/202 (72%), Gaps = 2/202 (0%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +++ D+P +     V  +A+D ET+GL P RDRLC++QLS GDG   I+++A GQ  APN
Sbjct: 5   LYQNDLPDDLKLGPV--VAIDCETMGLNPHRDRLCVIQLSDGDGNAHIVQVAKGQTEAPN 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  ML D +  K+FH+GRFDIA +++ FG    PV+CTKIASRL RTYT++HGLK+  +E
Sbjct: 63  LCAMLEDPETLKLFHFGRFDIAAMYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLTQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           L+G++ISK QQ SDW A  L++ QL YAASDV++LH LR    ++L+R GR ++A +C +
Sbjct: 123 LIGVDISKQQQMSDWGAKVLTEAQLDYAASDVLYLHRLREALNKRLEREGRMEMAQACFD 182

Query: 186 FLMDRAELDLLGWENVDIFSHS 207
           FL  RA+LDL GW   DIF+HS
Sbjct: 183 FLPMRAKLDLAGWPETDIFAHS 204


>gi|89052719|ref|YP_508170.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
 gi|88862268|gb|ABD53145.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
          Length = 203

 Score =  227 bits (578), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 103/184 (55%), Positives = 139/184 (75%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC++QLS GDG   ++++A GQ  APNL  +L D    K+FH+G
Sbjct: 20  VAIDCETMGLHPHRDRLCVIQLSDGDGNAHLVQVAKGQTAAPNLCALLEDPNTLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +++ FG    PV+CTKIAS+L RTYT++HGLK+ L+ELLGI+ISK QQSSDW A
Sbjct: 80  RFDIAAMYHAFGALTAPVYCTKIASKLVRTYTDRHGLKNLLQELLGIDISKQQQSSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           D L++ Q+ YAASDV++LH ++ +    L R GR++LA +C +FL  RA+LDL GW  +D
Sbjct: 140 DSLTEAQVDYAASDVLYLHGVKDKLDVMLAREGRTELAQACFDFLPMRAKLDLAGWPEMD 199

Query: 203 IFSH 206
           IFSH
Sbjct: 200 IFSH 203


>gi|332187924|ref|ZP_08389657.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17]
 gi|332012085|gb|EGI54157.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17]
          Length = 206

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/206 (54%), Positives = 150/206 (72%), Gaps = 2/206 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-GQK 61
           T+ +HE DIPA+  A    AIAVDTET+GL+  RDRLC+VQLS G     ++R +     
Sbjct: 2   TVHLHEEDIPADLFAPGA-AIAVDTETMGLITPRDRLCVVQLSDGGPDEHLVRFSPDSDY 60

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D  R K++H+GRFDIA + +  GV   PV+CTKIASRL RTYT++HGLK+
Sbjct: 61  AAPNLRALLADPARLKLYHFGRFDIAAIRHYLGVVAAPVYCTKIASRLIRTYTDRHGLKE 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLGI +SKAQQSSDW A +LSD Q +YAASDV +LH ++++  ++L+R GR +LA 
Sbjct: 121 LVRELLGIELSKAQQSSDWGAPELSDAQREYAASDVRYLHRMKVELDKRLEREGRMELAQ 180

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  RAELDL GW  +DIF+H+
Sbjct: 181 ACFDFLPARAELDLAGWPEIDIFAHA 206


>gi|315497170|ref|YP_004085974.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48]
 gi|315415182|gb|ADU11823.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48]
          Length = 206

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 142/205 (69%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI  HEGD+P       V  +A+D+ET+GL   RD LC+VQLS GDG   ++R+     +
Sbjct: 2   TIHYHEGDLPNGLNLGAV--VAIDSETMGLRFGRDDLCVVQLSAGDGDAHVVRLNRPAYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +L DEK  K+FH+GRFDI +     GV   PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKALLTDEKVLKLFHFGRFDIGMFLLHLGVVTAPVYCTKIASKLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL ++ISKAQQSSDW A  L+ EQL YAASDV+HLH LR +    L R GR++LA  
Sbjct: 120 VRELLSVDISKAQQSSDWGAQTLTPEQLAYAASDVLHLHTLREKLDTMLAREGRTELAQG 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  R +LDL GWE+ DIF+HS
Sbjct: 180 CFDFLPHRVKLDLAGWEDTDIFAHS 204


>gi|89067364|ref|ZP_01154877.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
 gi|89046933|gb|EAR52987.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
          Length = 203

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/184 (57%), Positives = 138/184 (75%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQ+S GDG   ++++A GQ +APNLV ML +    K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCVVQMSGGDGHAHLVQVAKGQTSAPNLVAMLENPDVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA L   FG R  PV+CTKIAS+L RT+T++HGLK  L++L+G+++SK QQ SDW A
Sbjct: 80  RFDIAALMNAFGARTAPVYCTKIASKLVRTFTDRHGLKVLLQDLVGVDVSKHQQQSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           + LSD QL YAASDV+HLH LR +  E L R GR+ +A +C +FL  RA+LDL GW + D
Sbjct: 140 ETLSDAQLDYAASDVLHLHRLREKLDEMLAREGRTMIAQACFDFLPTRAQLDLAGWPDQD 199

Query: 203 IFSH 206
           IFSH
Sbjct: 200 IFSH 203


>gi|126463573|ref|YP_001044687.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126105237|gb|ABN77915.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 204

 Score =  225 bits (574), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 147/205 (71%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H  D+P   A   V  +A+DTET+GL PRRDRLC+VQLS GDG   +++I  GQ +
Sbjct: 2   TIHLHRNDLPDGLALGPV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA L   FGVR  PV+CTKIAS++ RT+T++HGLK  
Sbjct: 60  APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G+++SK QQ+SDW A +L+D Q  YAASDV+HLH L+ +   +L R GR +LA  
Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179

Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206
           C +FL  RAELDL+GW E  DIF H
Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204


>gi|254510165|ref|ZP_05122232.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11]
 gi|221533876|gb|EEE36864.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11]
          Length = 204

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/185 (55%), Positives = 137/185 (74%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC++Q+S GDG   I+++  GQ +APNL  ML D    K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCVIQMSGGDGDCHIVQVEKGQASAPNLCAMLEDPNILKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +++ FG    PV+CTKIASRL RTYT++HGLK+  +ELLG++ISK QQ SDW A
Sbjct: 80  RFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLCQELLGVDISKQQQMSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           + L+D QL YAASDV++LH LR     +L R GR+++A +C +FL  RA+LDL GW   D
Sbjct: 140 ETLTDAQLDYAASDVLYLHRLREALDGRLAREGRTEVAQACFDFLPTRAKLDLAGWPETD 199

Query: 203 IFSHS 207
           IF+HS
Sbjct: 200 IFAHS 204


>gi|163733026|ref|ZP_02140470.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
 gi|161393561|gb|EDQ17886.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
          Length = 204

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 141/205 (68%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +V++ D+P          +A+D ET+GL P RDRLC+VQLS GDG   +I+IA GQ  
Sbjct: 2   THKVYKNDLPD--GLDLGPMVAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    K+FH+GRFDIA +   FG    PV+CTKIASRL RTYT++HGL   
Sbjct: 60  APNLCKLLEDPNVLKLFHFGRFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L+ELL I+ISK QQSSDW AD L+D Q+ YAASDV++LH LR      L R GR + A +
Sbjct: 120 LQELLNIDISKQQQSSDWGADTLTDAQIDYAASDVLYLHQLREALNTMLTREGRMETAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDL+GW + DIF+HS
Sbjct: 180 CFDFLPMRAKLDLMGWPDTDIFAHS 204


>gi|312114054|ref|YP_004011650.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
 gi|311219183|gb|ADP70551.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
          Length = 204

 Score =  224 bits (572), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI VH  D+P +    +  ++A+DTETLGL P RDRLC+VQLS GDG   +++   G  +
Sbjct: 2   TITVHLNDLPPDI--DFGASVAIDTETLGLKPHRDRLCVVQLSAGDGNAHLVQFEKGHYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +LV+    KIFH+GRFDIAV+    GV+  PV+CTKIA++L RT+T +HGLKD 
Sbjct: 60  APNLTALLVNPAVLKIFHFGRFDIAVMQQYLGVKTGPVYCTKIAAKLVRTFTERHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG+ +SK QQ+SDW    L+ EQL YAASDV+HLHAL+ +    L R GR++LA +
Sbjct: 120 CRELLGVELSKQQQTSDWGQAKLTPEQLSYAASDVLHLHALKEKLDALLAREGRTELAAA 179

Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206
           C  FL  RAELDL GW ++ D+F+H
Sbjct: 180 CFGFLPYRAELDLKGWHDDADVFNH 204


>gi|260431736|ref|ZP_05785707.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415564|gb|EEX08823.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
          Length = 204

 Score =  224 bits (572), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 103/185 (55%), Positives = 137/185 (74%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC++Q+S GDG   I+++  GQ  APNL  ML + +  K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCVIQMSGGDGHSHIVQVEKGQTEAPNLCAMLENPEVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA L++ FG    PV+CTKIASRL RTYT++HGLK+  +ELLGI+ISK QQ SDW A
Sbjct: 80  RFDIAALYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLCQELLGIDISKQQQMSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           + L++ QL YAASDV++LH LR     +L+R GR+++A +C +FL  RA LDL GW   D
Sbjct: 140 ETLTEAQLDYAASDVLYLHQLRAALDARLEREGRTEMAQACFDFLPMRARLDLAGWPETD 199

Query: 203 IFSHS 207
           IF+HS
Sbjct: 200 IFAHS 204


>gi|221640647|ref|YP_002526909.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
 gi|221161428|gb|ACM02408.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
          Length = 204

 Score =  224 bits (570), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 146/205 (71%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H  D+P       V  +A+DTET+GL PRRDRLC+VQLS GDG   +++I  GQ +
Sbjct: 2   TIHLHRSDLPDGLVLGPV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA L   FGVR  PV+CTKIAS++ RT+T++HGLK  
Sbjct: 60  APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G+++SK QQ+SDW A +L+D Q  YAASDV+HLH L+ +   +L R GR +LA  
Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179

Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206
           C +FL  RAELDL+GW E  DIF H
Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204


>gi|77464733|ref|YP_354237.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|77389151|gb|ABA80336.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
          Length = 204

 Score =  224 bits (570), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 146/205 (71%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H  D+P       V  +A+DTET+GL PRRDRLC+VQLS GDG   +++I  GQ +
Sbjct: 2   TIHLHRNDLPDGLVLGPV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA L   FGVR  PV+CTKIAS++ RT+T++HGLK  
Sbjct: 60  APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G+++SK QQ+SDW A +L+D Q  YAASDV+HLH L+ +   +L R GR +LA  
Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179

Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206
           C +FL  RAELDL+GW E  DIF H
Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204


>gi|259417301|ref|ZP_05741220.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B]
 gi|259346207|gb|EEW58021.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B]
          Length = 204

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 141/202 (69%), Gaps = 2/202 (0%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +++ D+P       V  +A+D ET+GL P RDRLC+VQ+S GDG   +++I+  Q  APN
Sbjct: 5   LYQNDLPDSVDLGPV--VAIDCETMGLNPHRDRLCVVQMSGGDGDAHLVQISKDQTEAPN 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  ML +    K+FHYGRFDIA L++ FG    PV+CTKIASRL RTYT++HGLK+  ++
Sbjct: 63  LTSMLTNPDVLKLFHYGRFDIAALYHRFGALTAPVYCTKIASRLVRTYTDRHGLKNLTQD 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           LLG +ISK QQ SDW AD L+  Q+ YAASDV+HLH LR     +L R GRSDLA +C +
Sbjct: 123 LLGQDISKQQQMSDWGADTLTRAQMDYAASDVLHLHRLRGALDLRLAREGRSDLAQACFD 182

Query: 186 FLMDRAELDLLGWENVDIFSHS 207
           FL  RA LDL GW + DIF+HS
Sbjct: 183 FLPTRARLDLAGWPDTDIFAHS 204


>gi|332559626|ref|ZP_08413948.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
 gi|332277338|gb|EGJ22653.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
          Length = 204

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 146/205 (71%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H  D+P       V  +A+DTET+GL PRRDRLC+VQLS GDG   +++I  GQ +
Sbjct: 2   TIHLHRNDLPDGLVLGPV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLLQIERGQTS 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA L   FGVR  PV+CTKIAS++ RT+T++HGLK  
Sbjct: 60  APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G+++SK QQ+SDW A +L+D Q  YAASDV+HLH L+ +   +L R GR +LA  
Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179

Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206
           C +FL  RAELDL+GW E  DIF H
Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204


>gi|83855386|ref|ZP_00948916.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83941910|ref|ZP_00954372.1| exonuclease, putative [Sulfitobacter sp. EE-36]
 gi|83843229|gb|EAP82396.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83847730|gb|EAP85605.1| exonuclease, putative [Sulfitobacter sp. EE-36]
          Length = 204

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/205 (53%), Positives = 139/205 (67%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  V++ D+P          +A+D ET+GL P RDRLC+VQLS GDG   +++IA GQ  
Sbjct: 2   TNTVYQNDLPD--GLNLGPMVAIDCETMGLHPHRDRLCVVQLSGGDGNAHLVQIAKGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    K+FHYGRFDIA L  TFG +  PV+CTKIASRL RTYT++HGL   
Sbjct: 60  APNLCALLEDPHVLKLFHYGRFDIAALLNTFGAKAAPVYCTKIASRLVRTYTDRHGLAKL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL ++ISK QQSSDW A+ L+  Q+ YAASDV+HLH LR    + L R GR +LA +
Sbjct: 120 CQELLSVDISKQQQSSDWGAETLTKAQIDYAASDVLHLHKLRDVLNQMLIREGRIELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDL GW   DIF+H+
Sbjct: 180 CFEFLPTRAQLDLDGWPETDIFAHA 204


>gi|114568663|ref|YP_755343.1| 3'-5' exonuclease [Maricaulis maris MCS10]
 gi|114339125|gb|ABI64405.1| 3'-5' exonuclease [Maricaulis maris MCS10]
          Length = 204

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 144/205 (70%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+  H+GD+PA+     +  +AVDTETLGL   RD LC+VQLS GDG   ++++     +
Sbjct: 2   TVHYHKGDLPADIDLGPI--VAVDTETLGLSLTRDMLCVVQLSAGDGDAHVVQMNRADYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +L D   EKI H+ RFD+A++    GV + PVFCTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKRVLADPAVEKILHFARFDVAMVDKYLGVTMAPVFCTKIASKLVRTYTDRHGLKDV 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+G  ++K QQSSDW AD+LS  QL YAASDV+HLH LR +    L+R GR+DLA +
Sbjct: 120 TRELVGAEMNKQQQSSDWGADELSPAQLDYAASDVLHLHKLREKLGMMLEREGRTDLAKA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDL GW  +DIF+HS
Sbjct: 180 CFDFLPTRAKLDLAGWPEIDIFAHS 204


>gi|146278808|ref|YP_001168967.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
 gi|145557049|gb|ABP71662.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
          Length = 204

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 145/205 (70%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H  D+P       V  +A+DTET+GL PRRDRLC+VQLS GDG   +++I  GQ  
Sbjct: 2   TIHLHRNDLPDGLDLGRV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTR 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA L   FGVR  PV+CTKIAS++ RT+T++HGLK  
Sbjct: 60  APNLERLLTDPQVLKLFHFGRFDIAALQRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G+++SK QQ+SDW A +L+D Q  YAASDV+HLH L+ +   +L R GR +LA  
Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKEELEARLLREGRMELAQR 179

Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206
           C +FL  RAELDL+GW E  DIF H
Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204


>gi|114764076|ref|ZP_01443315.1| exonuclease, putative [Pelagibaca bermudensis HTCC2601]
 gi|114543434|gb|EAU46449.1| exonuclease, putative [Roseovarius sp. HTCC2601]
          Length = 204

 Score =  223 bits (567), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 140/202 (69%), Gaps = 2/202 (0%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +++GD+P       V  +A+D ET+GL P RDRLC+VQLS GDG   ++++A GQ  APN
Sbjct: 5   LYKGDLPDGLDLGPV--VAIDCETMGLEPHRDRLCVVQLSGGDGNAHLVQVAKGQTEAPN 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L DE   K+FHYGRFDIA ++  FG    PV+CTKIASR+ RTYT++HGLK   +E
Sbjct: 63  LCRLLRDECVLKLFHYGRFDIAAMYNAFGALAAPVYCTKIASRMVRTYTDRHGLKTLTQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           LL ++ISK QQSSDW A+ L++ Q  YAASDV+HLH LR      L R GRS LA SC +
Sbjct: 123 LLSVDISKQQQSSDWGAETLTEAQRDYAASDVLHLHKLREALDGMLAREGRSALAQSCFD 182

Query: 186 FLMDRAELDLLGWENVDIFSHS 207
           FL  RA LDL GW   DIF+HS
Sbjct: 183 FLPTRALLDLEGWPGTDIFAHS 204


>gi|296115075|ref|ZP_06833717.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
 gi|295978412|gb|EFG85148.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
          Length = 215

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 144/206 (69%), Gaps = 4/206 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI  H GD+P +    +  A+AVDTET+GL P RDRLC+VQLS GDG   ++++ AG   
Sbjct: 9   TIHFHRGDLPHDVV--FSGAVAVDTETMGLNPHRDRLCLVQLSDGDGHAHLVQVPAGATA 66

Query: 63  A--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           A  PN++ +L D    K+ H+ RFD+A+L YTFG+ V P  CTKIAS+L RTYT +HGL 
Sbjct: 67  ADFPNMLAVLTDPSVTKLMHFARFDVAILQYTFGITVAPCICTKIASKLVRTYTERHGLA 126

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
              +ELLG+ +SK QQSSDW A DL+ EQ+ YAASDV++LHAL  +    L R GR +LA
Sbjct: 127 HLCRELLGVELSKQQQSSDWGAPDLTPEQMTYAASDVLYLHALWARLEALLVREGRRELA 186

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C +F+  RA LD+LG+E+ D+F+H
Sbjct: 187 QACYDFMPTRARLDILGYEDPDLFAH 212


>gi|329847152|ref|ZP_08262180.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
 gi|328842215|gb|EGF91784.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
          Length = 206

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 143/205 (69%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+  HEGD+PA        +IA+D+ET+GL   RD LC+VQLS GDG   ++R+     +
Sbjct: 2   TVFYHEGDLPA--GLDLGKSIALDSETMGLRFGRDDLCVVQLSAGDGHAHVVRLNRPAYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +LVD    K+FHYGRFDI +     GV   PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKALLVDPSVLKLFHYGRFDIGMFALHLGVDTSPVYCTKIASKLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+G+++SKAQQSSDW A  L+ EQL YAASDV+HLHAL+ +    L R GRS LA +
Sbjct: 120 SRELVGVDMSKAQQSSDWGAATLTPEQLAYAASDVLHLHALKDKLDAMLAREGRSALAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  R +LDL GWE+ DIF+HS
Sbjct: 180 CFDFLPQRVKLDLAGWEDCDIFAHS 204


>gi|163794941|ref|ZP_02188910.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
 gi|159179760|gb|EDP64287.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
          Length = 203

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/204 (52%), Positives = 144/204 (70%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+ +H GD+P       V  +A+D+ET+GL P RDRLC+VQ S GDGT  +++ A G+ +
Sbjct: 2   TVTLHHGDLPDGLDLGSV--VAIDSETMGLRPIRDRLCVVQFSSGDGTAHLVQFAPGEYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D    K+FH+ RFD+AVL    GV   P++CTKIAS+L RTYT++HGLKD 
Sbjct: 60  APNLTRMLTDPDVLKLFHFARFDVAVLQAFLGVATAPIYCTKIASKLVRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+G+++SK QQSSDW A +L+ EQL YAASDV+HLHAL+ +    L R GR+ +A  
Sbjct: 120 CRELIGVDLSKQQQSSDWGAAELTAEQLAYAASDVLHLHALKDRLDIMLAREGRTGIAAD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL  RA LDL+G+ + DIF+H
Sbjct: 180 CFRFLGTRAALDLIGYADEDIFAH 203


>gi|167648909|ref|YP_001686572.1| 3'-5' exonuclease [Caulobacter sp. K31]
 gi|167351339|gb|ABZ74074.1| 3'-5' exonuclease [Caulobacter sp. K31]
          Length = 205

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 140/202 (69%), Gaps = 1/202 (0%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +HEGD+P    A    AIA+D+ET+GL   RD LC+VQLS GDG   ++R+     +APN
Sbjct: 5   LHEGDLPDGVFAGAA-AIAIDSETMGLRLGRDPLCVVQLSSGDGDAHVVRLDRATYDAPN 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K+FH+GRFDIA+     GV   PV+CTKIAS+L RTYT++HGLKD  +E
Sbjct: 64  LKRLLTDPSVVKLFHFGRFDIAMFLLHLGVMTAPVYCTKIASKLARTYTDRHGLKDVTRE 123

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           L+G+ +SK QQSSDW A  LS EQL YAASDV+HLHALR +    L R GR  LA +  +
Sbjct: 124 LVGVELSKVQQSSDWGAATLSPEQLAYAASDVLHLHALRERLNAMLVREGRMQLAQAAFD 183

Query: 186 FLMDRAELDLLGWENVDIFSHS 207
           +L  RA LDL GWE+VDIF+H+
Sbjct: 184 YLPHRAALDLAGWEDVDIFAHT 205


>gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510]
 gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510]
          Length = 208

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 144/206 (69%), Gaps = 3/206 (1%)

Query: 4   IRVHEGDIPAE---CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           I +H+GD+P      A    + +A+DTET+GL P RDRLC+VQLS GDG V +++   G+
Sbjct: 3   IDLHDGDLPDGLDLAAGARDNCVAIDTETMGLNPHRDRLCLVQLSAGDGAVHLVQFRPGR 62

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             APNL  +L D    K+FH+ RFD+AV+    GV  RPV+CTK+AS+L RT+T++HGLK
Sbjct: 63  YEAPNLKRLLTDPGVTKLFHFARFDVAVMKAYLGVDCRPVYCTKVASKLVRTFTDRHGLK 122

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  K+LLG+ ISK QQSSDW A +L+ +Q++YAASDV+HLH L+ +    L R GR+ LA
Sbjct: 123 DLCKDLLGVEISKQQQSSDWGAPELTTDQMKYAASDVLHLHDLKAKLDVMLAREGRTHLA 182

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C +FL  R ELDL GWE  DI +H
Sbjct: 183 QACFDFLPARGELDLGGWETPDILAH 208


>gi|16127833|ref|NP_422397.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|221236653|ref|YP_002519090.1| ribonuclease D [Caulobacter crescentus NA1000]
 gi|13425349|gb|AAK25565.1| ribonuclease D, putative [Caulobacter crescentus CB15]
 gi|220965826|gb|ACL97182.1| ribonuclease D [Caulobacter crescentus NA1000]
          Length = 205

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 141/202 (69%), Gaps = 1/202 (0%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           VHEGD+P    A   + IA+D+ET+GL  RRD LC+VQLS GDG   ++R++    + PN
Sbjct: 5   VHEGDLPDGVFAD-AEIIAIDSETMGLRLRRDPLCVVQLSAGDGDAHVVRLSRPDYDCPN 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L + K  K+FH+GRFDIA+     GV   PV+CTKIAS+L RTYT++HGLKD  +E
Sbjct: 64  LKALLTNPKVLKLFHFGRFDIAMFELHLGVVTAPVYCTKIASKLARTYTDRHGLKDVTRE 123

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           LLG+ +SK QQSSDW A  LS +Q+ YAASDV+HLH LRL+    L+R GR  LA    +
Sbjct: 124 LLGVELSKVQQSSDWGAPSLSVDQVAYAASDVLHLHGLRLKLNAMLEREGRMALAQHAFD 183

Query: 186 FLMDRAELDLLGWENVDIFSHS 207
           +L  RA LDL GWE +DIF+HS
Sbjct: 184 YLPHRASLDLAGWEEMDIFAHS 205


>gi|260428903|ref|ZP_05782880.1| 3'-5' exonuclease [Citreicella sp. SE45]
 gi|260419526|gb|EEX12779.1| 3'-5' exonuclease [Citreicella sp. SE45]
          Length = 204

 Score =  221 bits (562), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 143/202 (70%), Gaps = 2/202 (0%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +++GD+P       V  +A+D ET+GL P RDRLC+VQLS GDG   ++++A GQ  APN
Sbjct: 5   LYKGDLPDGLDLGPV--VAIDCETMGLDPHRDRLCVVQLSGGDGNAHLVQVARGQTEAPN 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L DE   K+FH+GRFDIA +++ FG    PV+CTKIASR+ RTYT++HGLK   +E
Sbjct: 63  LCRLLRDETVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRMVRTYTDRHGLKALTQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           LL ++ISK QQSSDW A DL+  QL YAASDV++LH LR +    L+R GR+ LA +C +
Sbjct: 123 LLSVDISKQQQSSDWGAADLTAAQLDYAASDVLYLHQLRDRLNGMLEREGRTALAQACFD 182

Query: 186 FLMDRAELDLLGWENVDIFSHS 207
           FL  RA LDL GW   DIF+H+
Sbjct: 183 FLPTRALLDLEGWPETDIFAHA 204


>gi|88608093|ref|YP_506413.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600262|gb|ABD45730.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 206

 Score =  220 bits (561), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 143/206 (69%), Gaps = 2/206 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M    ++EGD+PA+ A    DAIA+DTE++GL+ RRDRLC+VQLS GDGT  ++R     
Sbjct: 1   MNKYYIYEGDVPADFAPS--DAIAIDTESMGLVNRRDRLCLVQLSTGDGTAHLVRFNGTD 58

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +AP L  +LVD    KIFH+ RFDIA+L +  GV     +CTKIASRL RTYT+ H LK
Sbjct: 59  YSAPRLKSLLVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLK 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   +LLG+ ++K +QSSDW +  L+ EQ+ YAASDV++LHA++      L+R  R +LA
Sbjct: 119 ELCLDLLGVRLNKGKQSSDWGSTSLTREQMSYAASDVLYLHAIKEALDVMLKREKRIELA 178

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C  FL  RAELDLLGWEN DIFSH
Sbjct: 179 RACFQFLPYRAELDLLGWENQDIFSH 204


>gi|255262197|ref|ZP_05341539.1| 3'-5' exonuclease [Thalassiobium sp. R2A62]
 gi|255104532|gb|EET47206.1| 3'-5' exonuclease [Thalassiobium sp. R2A62]
          Length = 203

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/184 (53%), Positives = 135/184 (73%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC++Q+S GD    II+++ GQ  APNL  ML +    K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCVIQMSGGDSNAHIIQVSKGQTEAPNLTAMLTNPDVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +   FG    PV+CTKIAS++ RTYT++HGLK+ L+EL+G++ISK QQSSDW +
Sbjct: 80  RFDIAAMQNAFGAVTAPVYCTKIASKMVRTYTDRHGLKNLLQELIGVDISKQQQSSDWGS 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
             L++ QL YAASDV++LH LR +   +L R GR ++A +C +FL  RA+LDL GW  +D
Sbjct: 140 QTLTNAQLDYAASDVLYLHKLRTELNARLVREGRMEMAQACFDFLPMRAQLDLEGWPEID 199

Query: 203 IFSH 206
           IFSH
Sbjct: 200 IFSH 203


>gi|254419186|ref|ZP_05032910.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3]
 gi|196185363|gb|EDX80339.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3]
          Length = 204

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 143/205 (69%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+ +HEGD+P +        +A+D+ET+GL  RRD LC+VQLS GDG   ++R+     +
Sbjct: 2   TVYLHEGDLPDDL--DLGPDVAIDSETMGLRFRRDPLCVVQLSAGDGNAHVVRLNRPGYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +L D    KIFH+GRFDI +     GV  RPV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKRLLTDPAVTKIFHFGRFDIGMFLLHLGVETRPVYCTKIASKLARTYTDRHGLKDV 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E +G+++SKAQQSSDW A +L+  QL YAASDV++LHA R +    L R GR++LA  
Sbjct: 120 VRETVGVDLSKAQQSSDWGAAELTQAQLDYAASDVLYLHAARAKLDLMLAREGRAELAAQ 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  R+ LDL GW+ +DIF+HS
Sbjct: 180 CFDFLPTRSALDLAGWDEIDIFAHS 204


>gi|329888476|ref|ZP_08267074.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328847032|gb|EGF96594.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 204

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/205 (52%), Positives = 142/205 (69%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+  HEGD+P          +A+D+ET+GL  RRD LC+VQLS GDG   ++R+     +
Sbjct: 2   TVYFHEGDLPD--GLDLGPQVAIDSETMGLRFRRDPLCVVQLSSGDGNAHVVRLNRPAYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +L D K  KIFH+GRFDI +     GV  RPV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKRLLTDPKVLKIFHFGRFDIGMFDLHLGVETRPVYCTKIASKLARTYTDRHGLKDV 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            KEL G+++SKAQQSSDW A +LS  QL YAASDV++LHA+  +  E L R GR +LA +
Sbjct: 120 AKELAGVDMSKAQQSSDWGAAELSQAQLDYAASDVLYLHAIMNRLNEMLVREGRMELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  R+ LDL GW+ +DIF+H+
Sbjct: 180 CFDFLPVRSRLDLAGWDEIDIFAHA 204


>gi|254463169|ref|ZP_05076585.1| 3'-5' exonuclease [Rhodobacterales bacterium HTCC2083]
 gi|206679758|gb|EDZ44245.1| 3'-5' exonuclease [Rhodobacteraceae bacterium HTCC2083]
          Length = 203

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/204 (52%), Positives = 143/204 (70%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  +++ DIPA+     V  +A+D ET+GL P RDRLC++Q+S GDG   ++++A GQ  
Sbjct: 2   TNTLYQNDIPADLDLGPV--VAIDCETMGLHPHRDRLCVIQMSGGDGNAHLVQVAKGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D    K+FH+GRFDIA +   FG    PV+CTKIAS+L RTYT++HGLK+ 
Sbjct: 60  APNLCKMLTDPNVLKLFHFGRFDIAAMQNAFGAVTAPVYCTKIASKLIRTYTDRHGLKNL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L+ELL I+ISK QQSSDW +  L++ QL+YAASDV++LH LR +  ++L R  R  +A +
Sbjct: 120 LQELLNIDISKQQQSSDWGSAKLTNAQLEYAASDVLYLHRLRTELNKRLIREDRMVIAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA LDL GW   DIFSH
Sbjct: 180 CFDFLPMRANLDLKGWPEQDIFSH 203


>gi|84684593|ref|ZP_01012494.1| exonuclease, putative [Maritimibacter alkaliphilus HTCC2654]
 gi|84667572|gb|EAQ14041.1| exonuclease, putative [Rhodobacterales bacterium HTCC2654]
          Length = 203

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/184 (55%), Positives = 135/184 (73%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQ+S GDG   ++++  GQ  APNL  ML D    KIFH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCVVQMSGGDGHAHMVQVERGQTEAPNLTAMLTDPNVLKIFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA L   FGV   PV+CTKIAS+L RTYT++HGLK  L+E+L I+ISK QQ +DW A
Sbjct: 80  RFDIAALLNAFGVVTAPVYCTKIASKLIRTYTDRHGLKTLLEEILRIDISKYQQQTDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
            +L++ QL YAASDV++LH LR +   +L R GR++LA +C +FL  RA+LDL GW + D
Sbjct: 140 RELTEAQLDYAASDVLYLHRLREKLDGRLAREGRAELAQACFDFLPARAQLDLAGWPDTD 199

Query: 203 IFSH 206
           IF+H
Sbjct: 200 IFTH 203


>gi|296282123|ref|ZP_06860121.1| 3'-5' exonuclease [Citromicrobium bathyomarinum JL354]
          Length = 205

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 143/204 (70%), Gaps = 3/204 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-N 62
           +  HE D+P    A    A+AVDTET+GL+ RRDRLC+VQ+S G G   ++R       +
Sbjct: 3   VYFHEEDLPEGVLAE--GAVAVDTETMGLITRRDRLCLVQISDGKGDEHLVRFGVDSSFD 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D  R K++H+GRFD+A + Y  GV   PVFCTKIAS+LTRTYT++HGLK  
Sbjct: 61  APNLKAVLADPARTKLYHFGRFDLAAIEYWLGVTAAPVFCTKIASKLTRTYTDRHGLKML 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + ELLG +ISK QQSSDW A  ++D Q +YAASDV +LH LR  F E+L R GR+++A +
Sbjct: 121 VSELLGEDISKQQQSSDWGAPKINDAQREYAASDVRYLHRLRDIFEERLAREGRTEIAQA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA LD++GW + DIFSH
Sbjct: 181 CFDFLPTRARLDIIGWPDTDIFSH 204


>gi|310817096|ref|YP_003965060.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
 gi|308755831|gb|ADO43760.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
          Length = 227

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/184 (55%), Positives = 134/184 (72%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IA+D ET+GL P RDRLC+VQ+S GDG   +I+I+ GQ++APNL  ML D    K+FHYG
Sbjct: 44  IAIDCETMGLNPHRDRLCLVQISGGDGNAHMIQISPGQRSAPNLARMLEDANILKLFHYG 103

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +++ FG   +PV+CTKIAS++ RTYT +HGLK  L++L+G++ISK QQ SDW A
Sbjct: 104 RFDIAAMYHAFGALAQPVYCTKIASKMVRTYTERHGLKFLLQDLIGVDISKHQQQSDWGA 163

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
             L+  QL YAASDV++LH LR      L R GR+ LA +C +FL  RA LDL GW+  D
Sbjct: 164 ASLTPAQLDYAASDVLYLHRLRAHLDALLAREGRTGLAQACFDFLPTRARLDLEGWQEND 223

Query: 203 IFSH 206
           IF+H
Sbjct: 224 IFAH 227


>gi|304320833|ref|YP_003854476.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
 gi|303299735|gb|ADM09334.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
          Length = 204

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/204 (51%), Positives = 141/204 (69%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +H  D+PA+   R+  A+AVD+ETLGL P RDRLC+VQLS GDG   ++   AG  +A
Sbjct: 3   IHLHRNDLPADI--RFDGAVAVDSETLGLNPLRDRLCVVQLSAGDGDAHLVTFDAGAYDA 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P+L  +L D +  KIFH+ RFD+AV  +  GV   P++CTKIAS+L RTYT++HGLKD +
Sbjct: 61  PHLKAVLSDPQLLKIFHFARFDVAVFKHWLGVDTTPIYCTKIASKLARTYTDRHGLKDVV 120

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +E+ G+ +SK QQSSDW+A +L++ Q  YAASDV+HLHA+R      + R GR  L T+ 
Sbjct: 121 REMTGVELSKQQQSSDWAAAELTEAQRAYAASDVLHLHAVREGLDRMIDREGRRALLTAA 180

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
             FL  RA LDL GW   DIF+HS
Sbjct: 181 FAFLPTRAALDLAGWSETDIFAHS 204


>gi|119713543|gb|ABL97595.1| putative exonuclease [uncultured marine bacterium EB0_39F01]
          Length = 204

 Score =  218 bits (556), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 134/185 (72%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTET+GL P RDRLC++Q S GDG   I++I      APN+  +L+D+ + K+FH+ 
Sbjct: 20  VAIDTETMGLNPMRDRLCVIQFSSGDGNAHIVQIEPDAPQAPNICKILLDQNKVKLFHFA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA+L + F + + PV+CTKIAS+L RTYTN+HGLK+ L+E+L I ISK QQSSDW A
Sbjct: 80  RFDIAILKHHFKINISPVYCTKIASKLVRTYTNKHGLKNLLREMLSIEISKQQQSSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
            +L+  Q++YAASDV++LH L  +    L+R  R ++A +C NFL  RA LDL GW   D
Sbjct: 140 SELTKAQIEYAASDVLYLHKLMDKLNLNLKRENRYEIAEACFNFLPMRATLDLAGWSEDD 199

Query: 203 IFSHS 207
           IFSHS
Sbjct: 200 IFSHS 204


>gi|239787681|emb|CAX84189.1| 3\'-5\' exonuclease family protein [uncultured bacterium]
          Length = 202

 Score =  218 bits (555), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 112/201 (55%), Positives = 139/201 (69%), Gaps = 3/201 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +H GD+P       V  IA+DTET+GL P RDRLC+VQLS GDG   ++    G+  AP 
Sbjct: 5   LHHGDLPEGLDLGPV--IAIDTETMGLNPMRDRLCLVQLSSGDGDAHLVHFQ-GRYEAPR 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D  R K+FHY RFDIA+L    GV   PV+CTKIASRLTRT T++HGLKD  ++
Sbjct: 62  LKALLADHNRLKLFHYARFDIAMLARWLGVTCTPVYCTKIASRLTRTNTDKHGLKDLCRD 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           LLGI++SK QQ+SDW + DL+ EQ  YAASDV+HLHAL+ +    L+R GR  LA SC +
Sbjct: 122 LLGIDLSKQQQTSDWGSGDLTAEQQAYAASDVLHLHALKAKLDALLKREGRGALADSCYS 181

Query: 186 FLMDRAELDLLGWENVDIFSH 206
           FL  RA LDLLGW   DIF+H
Sbjct: 182 FLPTRAALDLLGWGEEDIFAH 202


>gi|295691424|ref|YP_003595117.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
 gi|295433327|gb|ADG12499.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
          Length = 205

 Score =  218 bits (555), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 140/202 (69%), Gaps = 1/202 (0%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           VHEGD+P    A     IA+D+ET+GL   RD LC+VQLS GDG   ++R++    + PN
Sbjct: 5   VHEGDLPDGVFAG-ASIIAIDSETMGLRLGRDPLCVVQLSSGDGDAHVVRLSRPDYDCPN 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K+FH+GRFDIA+     GV   PV+CTKIAS+L RTYT++HGLKD  +E
Sbjct: 64  LKALLTDPAILKLFHFGRFDIAMFQLHLGVVTAPVYCTKIASKLARTYTDRHGLKDVTRE 123

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           LLG+ +SKAQQSSDW +  LS +Q+ YAASDV+HLH LR +    L+R GR  LA +  +
Sbjct: 124 LLGVELSKAQQSSDWGSASLSADQVAYAASDVLHLHGLRQKLNAMLEREGRMALAQAAFD 183

Query: 186 FLMDRAELDLLGWENVDIFSHS 207
           +L  RA LDL GWE+VDIF+HS
Sbjct: 184 YLPHRASLDLAGWEDVDIFAHS 205


>gi|68171372|ref|ZP_00544766.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657845|ref|YP_507797.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67772422|gb|AAY79412.1| ribonuclease D [Ehrlichia chaffeensis]
 gi|67999197|gb|EAM85853.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599302|gb|ABD44771.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 204

 Score =  218 bits (554), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 3/204 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           + VH+ D+P     ++ + +AVDTET+GL+ RRD+LC+VQL   +G   +++   G   A
Sbjct: 3   VFVHDCDLPN--GLKFENTVAVDTETMGLVCRRDKLCVVQLCDSNGETHLVKFL-GSYQA 59

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNLV +L D    KIFH+ RFDIAV+ Y  GV   P +CTKIAS+L RTYT+ HGLK+  
Sbjct: 60  PNLVSVLSDSSITKIFHFARFDIAVIRYYLGVWATPCYCTKIASKLVRTYTDHHGLKELC 119

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELL + ++K QQSSDW  + L+ EQL YAASDV++LHAL+ +    LQR  + +LA SC
Sbjct: 120 YELLNVKLNKMQQSSDWGKETLTSEQLNYAASDVIYLHALKNKLDAMLQRENKQELAASC 179

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
             FL  RA+LDLLGW+ VDIFSH+
Sbjct: 180 FGFLPTRAQLDLLGWDGVDIFSHA 203


>gi|254796888|ref|YP_003081725.1| ribonuclease D [Neorickettsia risticii str. Illinois]
 gi|254590124|gb|ACT69486.1| ribonuclease D [Neorickettsia risticii str. Illinois]
          Length = 216

 Score =  218 bits (554), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/201 (53%), Positives = 141/201 (70%), Gaps = 2/201 (0%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           ++EGD+PA+      DAIAVDTE++GL+ RRDRLC+VQLS GDGT  ++R      +AP 
Sbjct: 16  IYEGDVPADFPLS--DAIAVDTESMGLVNRRDRLCLVQLSTGDGTAHLVRFNGTDYSAPR 73

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  ++VD    KIFH+ RFDIA+L +  GV     +CTKIASRL RTYT+ H LK+   +
Sbjct: 74  LKSLIVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLKELCSD 133

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           LLG+ ++K +QSSDW +  L+ EQ+ YAASDV++LHA++      L+R  R +LA +C  
Sbjct: 134 LLGVRLNKGKQSSDWGSASLTREQMSYAASDVLYLHAIKEALDVMLKREKRIELAQACFQ 193

Query: 186 FLMDRAELDLLGWENVDIFSH 206
           FL  RAELDLLGWEN DIFSH
Sbjct: 194 FLPYRAELDLLGWENQDIFSH 214


>gi|114769797|ref|ZP_01447407.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|114549502|gb|EAU52384.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|161170293|gb|ABX59263.1| 5-exonuclease family protein [uncultured marine bacterium
           EB000_55B11]
 gi|297183821|gb|ADI19944.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 204

 Score =  218 bits (554), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 99/185 (53%), Positives = 134/185 (72%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTET+GL P RDRLC++Q S GDG   I++I      APN+  +L+D+ + K+FH+ 
Sbjct: 20  VAIDTETMGLNPMRDRLCVIQFSSGDGHAHIVQIEPDAPQAPNICKILLDQNKVKLFHFA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA+L + F + + PV+CTKIAS+L RTYTN+HGLK+ L+E+L I ISK QQSSDW A
Sbjct: 80  RFDIAILKHHFKINISPVYCTKIASKLVRTYTNKHGLKNLLREMLSIEISKQQQSSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
            +L+  Q++YAASDV++LH L  +    L+R  R ++A +C NFL  RA LDL GW   D
Sbjct: 140 SELTKAQIEYAASDVLYLHKLMDKLNLNLKRENRYEIAEACFNFLPMRATLDLAGWSEDD 199

Query: 203 IFSHS 207
           IFSHS
Sbjct: 200 IFSHS 204


>gi|254450150|ref|ZP_05063587.1| 3'-5' exonuclease [Octadecabacter antarcticus 238]
 gi|198264556|gb|EDY88826.1| 3'-5' exonuclease [Octadecabacter antarcticus 238]
          Length = 203

 Score =  218 bits (554), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/204 (52%), Positives = 141/204 (69%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  +++ D+P       V  +A+D ET+GL P RDRLC+VQLS GDG   +I++A GQ  
Sbjct: 2   TNHLYQNDLPDGLDLGAV--VAIDCETMGLNPHRDRLCLVQLSGGDGNCHLIQVAGGQTT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA +   FG    PV+CTKIAS+L RTYT++HGLK+ 
Sbjct: 60  APNLCKVLADPQVLKLFHFGRFDIAAMLNAFGTVTAPVYCTKIASKLIRTYTDRHGLKNL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L+E L ++ISK QQ SDW AD LS  QL YAASDV++LH LR +   +L R  R+D+A +
Sbjct: 120 LQEFLRVDISKFQQQSDWGADQLSKAQLDYAASDVLYLHKLRDELNIRLARELRTDMAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA+LDL GW   DIFSH
Sbjct: 180 CFDFLPMRAQLDLAGWPEQDIFSH 203


>gi|302381884|ref|YP_003817707.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
 gi|302192512|gb|ADL00084.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
          Length = 204

 Score =  218 bits (554), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/205 (52%), Positives = 144/205 (70%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+ +HEGD+P +        +AVD+ET+GL  RRD LC+VQLS GDG   ++R++    +
Sbjct: 2   TVYLHEGDLPDDLD--LGPEVAVDSETMGLRFRRDPLCVVQLSSGDGDAHVVRLSRPDYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  ++ D    KIFH+GRFDIA++    GV   PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKRLMADRDVLKIFHFGRFDIAMVELHLGVETGPVYCTKIASKLARTYTDRHGLKDV 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +E+ GI++SKAQQSSDW A +LS  QL YAASDV+HLH +  +  E L R GR +LA +
Sbjct: 120 AREMAGIDLSKAQQSSDWGAAELSQAQLDYAASDVLHLHVIMRRLNEMLVREGRMELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA LDL GW+ +DIF+H+
Sbjct: 180 CFDFLPVRARLDLRGWDEMDIFAHT 204


>gi|126734481|ref|ZP_01750228.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126717347|gb|EBA14211.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 203

 Score =  217 bits (553), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 101/184 (54%), Positives = 135/184 (73%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC++Q+S GDG   ++++  GQ  APNL  ML +    K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCLIQMSGGDGDCHLVQVTPGQTAAPNLCAMLENPDVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA L   FG    PV+CTKIAS+L RTYT++HGLK  L++++GI+ISK QQ SDW A
Sbjct: 80  RFDIAALLNAFGALTAPVYCTKIASKLVRTYTDRHGLKTLLQDMVGIDISKHQQQSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
            +L+D QL YAASDV++LH L+ +F   L R  R+D+A SC +FL  RA+LDL GW ++D
Sbjct: 140 PNLTDAQLDYAASDVLYLHQLKEKFDVLLAREHRADVAQSCFDFLPTRAKLDLAGWPDID 199

Query: 203 IFSH 206
           IFSH
Sbjct: 200 IFSH 203


>gi|57239514|ref|YP_180650.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579496|ref|YP_197708.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58617549|ref|YP_196748.1| putative ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|57161593|emb|CAH58521.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58417161|emb|CAI28274.1| Probable ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58418122|emb|CAI27326.1| Probable ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 205

 Score =  217 bits (553), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 104/204 (50%), Positives = 141/204 (69%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I VH+ D+P      + + +AVDTET+GL+ RRDRLC+VQ+S  +G V +++  + +  A
Sbjct: 3   IFVHDYDLPD--GVEFGNTVAVDTETMGLVCRRDRLCLVQMSGSNGNVHLVKFPSTEYQA 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
            NL  +L D    KIFH+ RFDI  + Y  G+   P +CTKIAS+L RTYT+ HGLK+  
Sbjct: 61  SNLKKILSDLSITKIFHFARFDITAIRYYLGIWAIPCYCTKIASKLARTYTDHHGLKELC 120

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELLGI ++K QQSSDW  + L+ EQL YAASDV+HLHAL+ +    L+R  + +LA SC
Sbjct: 121 NELLGIKLNKVQQSSDWGKEVLTSEQLNYAASDVIHLHALKSKLDAMLERENKQELAKSC 180

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
            +FL  R +LDLLGW+NVDIFSH+
Sbjct: 181 FDFLPTRVQLDLLGWDNVDIFSHA 204


>gi|163745220|ref|ZP_02152580.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161382038|gb|EDQ06447.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 204

 Score =  217 bits (552), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 102/185 (55%), Positives = 133/185 (71%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQLS GDG   +++IA GQ  APNL  +L +    K+FHYG
Sbjct: 20  VAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQIAKGQTEAPNLCALLENPHVLKLFHYG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +   FG    PV+CTKIASRL RTYT++HGL    +ELL ++ISK QQSSDW A
Sbjct: 80  RFDIAAMLNAFGATAAPVYCTKIASRLIRTYTDRHGLAKLCQELLSVDISKQQQSSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
            +L+  Q+ YAASDV++LH LR +  ++L R GR D+A +C +FL  RA LDL GW + D
Sbjct: 140 KELTQAQIDYAASDVLYLHRLRDELNKRLIREGRMDMAQACFDFLPMRARLDLEGWPDTD 199

Query: 203 IFSHS 207
           IF+H+
Sbjct: 200 IFAHA 204


>gi|154250652|ref|YP_001411476.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
 gi|154154602|gb|ABS61819.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
          Length = 203

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 140/204 (68%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            + +H GD+P   +  + +++AVDTET+GL P RD+LC+VQLS GDG   I+++  G  N
Sbjct: 2   AVTLHRGDLPEGLS--FGESVAVDTETMGLHPERDQLCVVQLSAGDGNAHIVQLDRGTYN 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           AP L  ++ D    KIFH+ RFD+A+L    GV   PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  APRLRALMADPAILKIFHFARFDVAMLQRYLGVVTAPVYCTKIASKLVRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+ I++SK QQSSDW A  L+D QL YAASDV+HLH ++      L R GR++LA +
Sbjct: 120 ARELVNIDMSKQQQSSDWGAASLTDAQLSYAASDVLHLHEIKSVLDGMLAREGRTELARA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL  RA LDL GW   DIF+H
Sbjct: 180 CFAFLPVRAALDLAGWPEEDIFAH 203


>gi|148555811|ref|YP_001263393.1| 3'-5' exonuclease [Sphingomonas wittichii RW1]
 gi|148501001|gb|ABQ69255.1| 3'-5' exonuclease [Sphingomonas wittichii RW1]
          Length = 205

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/205 (52%), Positives = 142/205 (69%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+ +H+ D+PA+        +AVDTET+GL+  RDRLC+VQ+S G G   ++R A G   
Sbjct: 2   TVHLHQEDLPADALG--PGPVAVDTETMGLITPRDRLCLVQISDGRGDEHLVRFAPGSDY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D  R K++H+ RFD+A + +  GV   PV+CTK ASRL RTYT++HGLK+
Sbjct: 60  AAPNLRAVLADPARLKLYHFARFDLAAIRHYIGVMAAPVYCTKTASRLIRTYTDRHGLKE 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG  +SK QQSSDW A DLS+ Q  YAASDV +LHA+R    E+L R GR+ LA 
Sbjct: 120 LVRELLGQEVSKQQQSSDWGAPDLSEAQKDYAASDVRYLHAMRTILDERLAREGRTALAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RAELDL GW  +DIF+H
Sbjct: 180 ACFDFLPARAELDLAGWPEIDIFAH 204


>gi|294013112|ref|YP_003546572.1| ribonuclease D [Sphingobium japonicum UT26S]
 gi|292676442|dbj|BAI97960.1| ribonuclease D [Sphingobium japonicum UT26S]
          Length = 205

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 140/205 (68%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+  HE D+P    A     IAVDTET+GL+  RDRLC+VQ+S G G   ++R   G   
Sbjct: 2   TVHFHEEDLPLGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGQGDEHLVRFNPGSDY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL   L D  R K++H+GRFDIA + +  GV   PV+CTKIASRL RTYT++HGLK+
Sbjct: 60  AAPNLRAALADPARLKLYHFGRFDIAAIRHYLGVVAAPVYCTKIASRLVRTYTDRHGLKE 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG  +SK QQSSDW    LSD Q +YAASDV +LHAL+ +  ++L R GR +LA 
Sbjct: 120 LVRELLGQELSKVQQSSDWGGPVLSDAQKEYAASDVRYLHALKAELDKRLAREGRMELAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RAELDL GW  +DIF+H
Sbjct: 180 ACFDFLPHRAELDLAGWPEIDIFAH 204


>gi|330993409|ref|ZP_08317344.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
 gi|329759439|gb|EGG75948.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
          Length = 215

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/205 (51%), Positives = 143/205 (69%), Gaps = 4/205 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I  H GD+PA+    +   +AVDTET+GL P RDRLC+VQLS GDG   ++++      A
Sbjct: 10  IHFHRGDLPADVT--FTGMVAVDTETMGLNPHRDRLCLVQLSAGDGQAHLVQVPPHATAA 67

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
             PNLV +L D +  KI H+ RFD+A+L +TF V V P  CTK+AS+L RTYT++HGL +
Sbjct: 68  GFPNLVRVLTDARVPKIMHFARFDVAILQHTFNVTVAPCICTKVASKLVRTYTDRHGLAN 127

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             +ELLG+ +SK QQSSDW A DL+ EQL YAASDV++LHAL  +    L R GR D+A 
Sbjct: 128 LCRELLGVELSKQQQSSDWGATDLTREQLCYAASDVLYLHALWERLEALLHREGRRDVAQ 187

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +F+  RA LD+LG+++ DIF+H
Sbjct: 188 ACFDFMPARARLDILGYQDPDIFAH 212


>gi|326388611|ref|ZP_08210204.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206862|gb|EGD57686.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
          Length = 205

 Score =  216 bits (550), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/205 (51%), Positives = 143/205 (69%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
            + +HE D+PA+  A  +  +AVDTET+GL+  RDRLC+VQ+S G G   ++R A G   
Sbjct: 2   AVYLHEEDLPADVLAPGI--VAVDTETMGLVTTRDRLCVVQISDGKGDEHLVRFAPGSTY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +APNL  +L D +R K+FH+ RFD+A + Y  GV   PVFCTKIAS+L RTYT++HGLK+
Sbjct: 60  DAPNLKAVLADPERLKLFHFARFDLAAIHYYLGVMATPVFCTKIASKLVRTYTDRHGLKE 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++EL G  ISK QQSSDW   +LSD QL+YAASDV +LH       ++L R GR+++A 
Sbjct: 120 LVRELAGKEISKQQQSSDWGGANLSDAQLEYAASDVRYLHTCHAVLVDRLAREGRAEIAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RA LD+ GW + DIFSH
Sbjct: 180 ACFDFLPTRALLDIAGWADRDIFSH 204


>gi|307293724|ref|ZP_07573568.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1]
 gi|306879875|gb|EFN11092.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1]
          Length = 205

 Score =  216 bits (550), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/205 (52%), Positives = 141/205 (68%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+  HE D+P    A     IAVDTET+GL+  RDRLC+VQ+S G G   ++R   G   
Sbjct: 2   TVHFHEEDLPQGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGQGDEHLVRFNPGSDY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D  R K++H+GRFDIA + +  G+   PV+CTKIASRL RTYT++HGLK+
Sbjct: 60  AAPNLRAVLADPARLKLYHFGRFDIAAIRHYMGIVAAPVYCTKIASRLVRTYTDRHGLKE 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG  +SK QQSSDW    LSD Q +YAASDV +LHAL+ +  ++L R GR +LA 
Sbjct: 120 LVRELLGQELSKVQQSSDWGGPVLSDPQKEYAASDVRYLHALKAELDKRLVREGRMELAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RAELDL GW  +DIF+H
Sbjct: 180 ACFDFLPHRAELDLAGWPEIDIFAH 204


>gi|149201444|ref|ZP_01878419.1| exonuclease, putative [Roseovarius sp. TM1035]
 gi|149145777|gb|EDM33803.1| exonuclease, putative [Roseovarius sp. TM1035]
          Length = 203

 Score =  216 bits (550), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/184 (56%), Positives = 133/184 (72%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQLS GDG   +++++ GQ  APNL  +L +    K+FH+G
Sbjct: 20  VAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQVSKGQTTAPNLARLLENPDVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +   FG    PV+CTKIAS+L RTYT++HGLK  L+ELL I+ISK QQSSDW A
Sbjct: 80  RFDIAAMQNAFGALAAPVYCTKIASKLIRTYTDRHGLKYLLQELLNIDISKQQQSSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           D LS  QL YAASDV++LH LR +   +L R GR +LA +C +FL  RA LDL GW  +D
Sbjct: 140 DSLSAAQLDYAASDVLYLHRLRDELNARLIREGRMELAQACFDFLPQRALLDLAGWPEID 199

Query: 203 IFSH 206
           IF+H
Sbjct: 200 IFAH 203


>gi|126724660|ref|ZP_01740503.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
 gi|126705824|gb|EBA04914.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
          Length = 203

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 132/184 (71%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC++Q+S GDG   ++++  GQ  APNL  ML D    K+FH+G
Sbjct: 20  VAIDCETMGLNPIRDRLCLIQMSNGDGNAHMVQVEKGQTEAPNLCRMLADPNVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +   FGV   PV+CTKIAS++ RTYT++HGL++ L+ELL ++ISK QQ SDW A
Sbjct: 80  RFDIAAMHNAFGVLTEPVYCTKIASKMVRTYTDRHGLRNLLQELLKVDISKFQQMSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           + L+  QL YAASDV+HLH LR +  E L R GR +LA SC +FL  RA LDL GW   D
Sbjct: 140 ETLTKAQLDYAASDVLHLHRLRDRLNELLVREGRMELAQSCFDFLPSRALLDLKGWPETD 199

Query: 203 IFSH 206
           IF+H
Sbjct: 200 IFAH 203


>gi|87201263|ref|YP_498520.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444]
 gi|87136944|gb|ABD27686.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444]
          Length = 205

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/205 (52%), Positives = 141/205 (68%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
            + +HE D+P    A    A+AVDTET+GL+  RDRLC+VQ+S G G   ++R + G   
Sbjct: 2   AVFLHEEDLPEGALA--PGAVAVDTETMGLITPRDRLCVVQISDGRGDEHLVRFSPGSAF 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D +R K++H+ RFD+A + +  GV   PVFCTKIAS+L RTYT++HGLKD
Sbjct: 60  AAPNLKAVLADPERLKLYHFARFDLAAIEHYLGVVAAPVFCTKIASKLVRTYTDRHGLKD 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG  ISK QQSSDW A  L+D Q +YAASDV HLHA+     E+L+R GR+ +A 
Sbjct: 120 LVRELLGKEISKQQQSSDWGAPTLTDAQQEYAASDVRHLHAMHTILVERLEREGRTAMAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RA LDL GW   DIFSH
Sbjct: 180 ACFDFLPMRARLDLAGWAERDIFSH 204


>gi|94495607|ref|ZP_01302187.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58]
 gi|94424995|gb|EAT10016.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58]
          Length = 205

 Score =  215 bits (548), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 140/205 (68%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+  HE D+P    A     IAVDTET+GL+  RDRLC+VQ+S G G   ++R   G   
Sbjct: 2   TVHFHEEDLPVGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGKGDEHLVRFNPGSDY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D +R K++H+GRFDIA L +  G+   PV+CTKIASRL RTYT++HGLK+
Sbjct: 60  AAPNLKAVLADPERLKLYHFGRFDIAALRHYLGIVAAPVYCTKIASRLVRTYTDRHGLKE 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG +ISK QQSSDW    LSD Q  YAASDV  LH L+ +  ++L+R GR +LA 
Sbjct: 120 LVRELLGQDISKQQQSSDWGGPVLSDAQKDYAASDVRFLHQLKAELDKRLEREGRMELAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RAELDL GW   DIF+H
Sbjct: 180 ACFDFLPHRAELDLAGWPETDIFAH 204


>gi|149912958|ref|ZP_01901492.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
 gi|149813364|gb|EDM73190.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
          Length = 203

 Score =  215 bits (547), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 100/184 (54%), Positives = 133/184 (72%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQ+S GDG   +++I  GQ  APNL  +L +    K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCVVQMSGGDGNAYLVQIDKGQTEAPNLAALLENPDILKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +F  FG    PV+CTKIAS+L RTYT++HGLK+ ++ELL  +ISK QQSSDW A
Sbjct: 80  RFDIAAMFNAFGALAAPVYCTKIASKLVRTYTDRHGLKNLMQELLDKDISKQQQSSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
             L++ QL YAASDV++LH LR +    L R GR ++A +C +FL  RA+LDL GW  +D
Sbjct: 140 PKLTEAQLDYAASDVLYLHQLRDELNRMLAREGRVEMAQACFDFLPIRAKLDLAGWPEID 199

Query: 203 IFSH 206
           IF+H
Sbjct: 200 IFAH 203


>gi|84514850|ref|ZP_01002213.1| exonuclease, putative [Loktanella vestfoldensis SKA53]
 gi|84511009|gb|EAQ07463.1| exonuclease, putative [Loktanella vestfoldensis SKA53]
          Length = 203

 Score =  214 bits (546), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 101/184 (54%), Positives = 131/184 (71%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC++Q+S GDG   +++++ GQ  APNL  ML D    K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCLIQMSGGDGDCHLVQVSKGQAGAPNLCAMLTDPAVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA L   FGV   PV+CTKIAS+L RTYT++HGLK  L+++LGI+ISK QQ SDW A
Sbjct: 80  RFDIAALLNAFGVVTAPVYCTKIASKLVRTYTDRHGLKVLLQDMLGIDISKHQQQSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
             L+  QL YAASDV++LH L+  F   LQR  R+ +A +C +FL  RA LDL GW   D
Sbjct: 140 PKLTPAQLDYAASDVLYLHQLKAAFDVLLQREDRTAVAKACFDFLPTRAALDLHGWPETD 199

Query: 203 IFSH 206
           IF+H
Sbjct: 200 IFTH 203


>gi|85705765|ref|ZP_01036862.1| exonuclease, putative [Roseovarius sp. 217]
 gi|85669755|gb|EAQ24619.1| exonuclease, putative [Roseovarius sp. 217]
          Length = 203

 Score =  214 bits (546), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/184 (55%), Positives = 132/184 (71%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQLS GDG   ++++A GQ +APNL  +L D    K+FH+G
Sbjct: 20  VAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQVAKGQTSAPNLERLLTDPNVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +   FG    PV+CTKIAS+L RTYT++HGLK  L+ELL I+ISK QQSSDW A
Sbjct: 80  RFDIAAMHNAFGALAAPVYCTKIASKLIRTYTDRHGLKYLLQELLNIDISKQQQSSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           + L+  QL YAASDV++LH LR +   +L R  R  LA +C +FL  RA LDL GW  +D
Sbjct: 140 ESLTSAQLDYAASDVLYLHRLRDELNTRLVREDRMGLAQACFDFLPQRAVLDLAGWPEID 199

Query: 203 IFSH 206
           IF+H
Sbjct: 200 IFAH 203


>gi|83950822|ref|ZP_00959555.1| exonuclease, putative [Roseovarius nubinhibens ISM]
 gi|83838721|gb|EAP78017.1| exonuclease, putative [Roseovarius nubinhibens ISM]
          Length = 203

 Score =  214 bits (546), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/204 (50%), Positives = 146/204 (71%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  V++GD+P +     +  +A+D ET+GL+P RDRLC+VQLS GDG   ++++A GQ+ 
Sbjct: 2   TNTVYKGDLPDDLDLGPI--VAIDCETMGLLPHRDRLCVVQLSGGDGHAHLVQVAKGQRT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L +    K+FH+GRFDIA +   FG    PV+CTKIAS+L RTYT++HGL++ 
Sbjct: 60  APNLVRLLENPDVLKLFHFGRFDIAAMLNAFGAVAAPVYCTKIASKLVRTYTDRHGLRNL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L++LLG++ISK QQSSDW   +LS  Q+ YAASDV++LH LR     +L R  R ++A +
Sbjct: 120 LQDLLGVDISKHQQSSDWGRAELSTAQIDYAASDVLYLHRLREALNVRLLREERMEMAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA+LDL GW + D+F+H
Sbjct: 180 CFDFLPMRAQLDLAGWPDDDLFAH 203


>gi|260577298|ref|ZP_05845271.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
 gi|259020479|gb|EEW23802.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
          Length = 204

 Score =  214 bits (544), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 108/204 (52%), Positives = 144/204 (70%), Gaps = 3/204 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           + +++GD+PA      V  +A+DTET+GL PRRDRLC+VQLS GDG   +++IA GQ +A
Sbjct: 3   VHLYKGDLPAGLNLGPV--VAIDTETMGLDPRRDRLCLVQLSSGDGNAHLVQIARGQTSA 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D    K+FH+GRFDIA +   FGV   PV+CTKIA++L RT+T++HGLK  L
Sbjct: 61  PNLEKLLTDPSVLKLFHFGRFDIAAMKAAFGVVTAPVWCTKIAAKLVRTFTDRHGLKYLL 120

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +EL+G+++SK QQ+SDW ++ LSD Q  YAASDV++LH L  +    L R  R  LA  C
Sbjct: 121 QELVGVDVSKQQQTSDWGSETLSDAQKDYAASDVLYLHRLMAELERCLIRENRLALAQRC 180

Query: 184 CNFLMDRAELDLLGW-ENVDIFSH 206
            +FL  RAELDL+GW E  DIF H
Sbjct: 181 FDFLPTRAELDLMGWDEPNDIFHH 204


>gi|241760851|ref|ZP_04758940.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753179|ref|YP_003226072.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283856222|ref|YP_162013.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374470|gb|EER63931.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552542|gb|ACV75488.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283775217|gb|AAV88902.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 209

 Score =  214 bits (544), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 141/205 (68%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-GQK 61
           T+  HE D+P +  +    A+AVDTET+GL+  RDRLC+VQ+S G G   ++R A     
Sbjct: 6   TVYFHEEDLPKDALSE--GAVAVDTETMGLITHRDRLCVVQISDGKGDQHLVRFAPDSDY 63

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +APNL  +L D  R KI+H+GRFDIA + Y  GV   PV+CTKIAS+L RTYT++HGLK+
Sbjct: 64  SAPNLKAVLSDPNRLKIYHFGRFDIAAILYYLGVMAAPVYCTKIASKLVRTYTDRHGLKE 123

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG +ISK QQ SDW  + LSD Q +YAASDV  LH L+ +   +L+R  R +LA 
Sbjct: 124 LVRELLGQDISKQQQCSDWGGEKLSDAQREYAASDVRFLHGLKEKLDIRLKREKREELAQ 183

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RA+LD+ GW   DIF+H
Sbjct: 184 ACFDFLPTRAKLDIAGWSETDIFAH 208


>gi|85709987|ref|ZP_01041052.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1]
 gi|85688697|gb|EAQ28701.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1]
          Length = 215

 Score =  214 bits (544), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 106/206 (51%), Positives = 141/206 (68%), Gaps = 2/206 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+  HE D+PA         +AVDTET+GL+  RDRLC+VQ+S G G   ++R + G   
Sbjct: 6   TVHFHEEDLPA-GVLEGTGPLAVDTETMGLITHRDRLCVVQISDGSGDEHLVRFSPGSDY 64

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L DE R K++H+ RFD+A + Y  GV   PVFCTKIAS+L RTYT++HGLK+
Sbjct: 65  EAPNLSAILADESRVKLYHFARFDLAAIQYYLGVVAAPVFCTKIASKLVRTYTDRHGLKN 124

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
              ELLG +ISK QQSSDW   +L+D Q +YAASDV +LH LR +   +L+R GR ++A 
Sbjct: 125 LTDELLGESISKQQQSSDWGGPELNDAQREYAASDVRYLHRLRDELIVRLEREGRMEIAQ 184

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  RA LD+ GW+  DIFSH+
Sbjct: 185 ACFDFLPTRAALDIAGWDGRDIFSHN 210


>gi|254292595|ref|YP_003058618.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
 gi|254041126|gb|ACT57921.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
          Length = 204

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 141/205 (68%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            I+ HEGD+P     +    +AVDTE +GL   RD+LC+VQLS G G   ++R+     +
Sbjct: 2   AIKYHEGDLPN--GLKLGAILAVDTEAMGLEFHRDQLCVVQLSDGTGDEHVVRLDRKTFD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  ++ D K  KIFH+ RFD+A++    G+   P+FCTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKALMSDTKVLKIFHFARFDVAMMKKWLGIECAPIFCTKIASKLARTYTDRHGLKDV 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+G ++SKAQQSSDW AD LS+ QL YAASDV++LH +R +    L+R GR +LA +
Sbjct: 120 SRELVGADMSKAQQSSDWGADSLSEAQLAYAASDVLYLHEIREKLILMLEREGRMELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDL GW   DIF+HS
Sbjct: 180 CFDFLPKRADLDLAGWPETDIFAHS 204


>gi|254438617|ref|ZP_05052111.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307]
 gi|198254063|gb|EDY78377.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307]
          Length = 203

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/184 (54%), Positives = 133/184 (72%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC++QLS GDG   +I+I+ GQ  APNL  +L D +  K+FH+G
Sbjct: 20  VAIDCETMGLNPHRDRLCLIQLSSGDGNCHLIQISVGQTTAPNLCKVLADPQVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +   FG    PV+CTKIAS+L RTYT++HGLK+ L+E L ++ISK QQ SDW A
Sbjct: 80  RFDIAAMLNAFGTVTAPVYCTKIASKLIRTYTDRHGLKNLLQEFLRVDISKFQQQSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           + LS  Q+ YAASDV++LH LR +   +L R  R+D+A +C +FL  RA+LDL GW   D
Sbjct: 140 ETLSKAQIDYAASDVLYLHQLRDELNIRLVRERRTDMAQACFDFLPMRAKLDLAGWPEQD 199

Query: 203 IFSH 206
           IFSH
Sbjct: 200 IFSH 203


>gi|209542515|ref|YP_002274744.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530192|gb|ACI50129.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score =  212 bits (540), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/204 (50%), Positives = 142/204 (69%), Gaps = 3/204 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +I +H GD+  +    +  +IAVDTE +GL P RDRLC+VQ+S GDG+  +++I  G  +
Sbjct: 8   SILLHRGDLADDVV--FHGSIAVDTEAMGLNPHRDRLCLVQISAGDGSAHLVQILPGTPS 65

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  ++ D    K+ H+ RFD+A+L ++ GV V PV CTKIAS+L RT+T +HGL   
Sbjct: 66  -PNLARLMADPSITKLMHFARFDVAILQHSLGVTVAPVICTKIASKLVRTFTERHGLAQL 124

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG+++SK QQ+SDW A +L+ EQ  YAASDV+HLHAL  +    L R GR DLA +
Sbjct: 125 CRELLGVDLSKQQQTSDWGAPELTPEQKAYAASDVLHLHALWTKLEALLHREGRRDLAQA 184

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA LDLLG+E+ DIF+H
Sbjct: 185 CYDFLPTRARLDLLGYEDPDIFAH 208


>gi|56417079|ref|YP_154153.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222475445|ref|YP_002563862.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
 gi|254995250|ref|ZP_05277440.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
 gi|255003431|ref|ZP_05278395.1| ribonuclease D (rnd) [Anaplasma marginale str. Puerto Rico]
 gi|255004550|ref|ZP_05279351.1| ribonuclease D (rnd) [Anaplasma marginale str. Virginia]
 gi|56388311|gb|AAV86898.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222419583|gb|ACM49606.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
          Length = 204

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 142/204 (69%), Gaps = 3/204 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            + VH  D+P        + +AVDTET+GL+ RRDR+C+VQLS GDG   +++ + G  +
Sbjct: 2   AVFVHNNDLPD--GLDLGNVVAVDTETMGLVCRRDRVCLVQLSSGDGDAHLVKFS-GDYS 58

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ++ + +  KIFH+ RFD+A + + FG+   P +CTKIASRL RTYTN HGLKD 
Sbjct: 59  APNLRRIVSNPEIMKIFHFARFDVAAIRHCFGMWAVPCYCTKIASRLVRTYTNHHGLKDL 118

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELLG+ I+KAQQSSDW  + L+ EQL YAA+DV++LH ++ +    L+R  + DLA S
Sbjct: 119 CYELLGVKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLDMMLEREDKQDLAES 178

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  F+  RAELDLLGW+ VDIFSH
Sbjct: 179 CFKFIPARAELDLLGWDGVDIFSH 202


>gi|209966458|ref|YP_002299373.1| ribonuclease D, putative [Rhodospirillum centenum SW]
 gi|209959924|gb|ACJ00561.1| ribonuclease D, putative [Rhodospirillum centenum SW]
          Length = 204

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/204 (52%), Positives = 142/204 (69%), Gaps = 3/204 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-N 62
           I +H+GD+P       V  +A+DTET+GL P RDRLC+VQLS GDG   +++   G   +
Sbjct: 3   IDLHDGDLPDGLDLGPV--VAIDTETMGLNPARDRLCLVQLSAGDGRCHLVQFRQGAGYD 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D    K+FH+ RFDIAV+    GV   PV+CTK+AS+LTRT+T++HGLKD 
Sbjct: 61  APNLKRMLTDPGTLKLFHFARFDIAVMQAYLGVLTGPVYCTKVASKLTRTFTDRHGLKDL 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            ++LLG+ +SK QQSSDW AD+L+ EQL+YAASDV+HLH ++ +    L R GR+ LA  
Sbjct: 121 CRDLLGVELSKQQQSSDWGADELTAEQLKYAASDVLHLHEIKARLDGMLAREGRTALAED 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL  RA LDL GW + D+F+H
Sbjct: 181 CFRFLPTRALLDLGGWADPDLFAH 204


>gi|269958513|ref|YP_003328300.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
 gi|269848342|gb|ACZ48986.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
          Length = 204

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 3/204 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            + VH  D+P        + +AVDTET+GL+ RRDR+C+VQLS GDG   +++ + G  +
Sbjct: 2   AVFVHNNDLPD--GLDLGNVVAVDTETMGLVCRRDRVCLVQLSSGDGDAHLVKFS-GDYS 58

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ++ +    KIFH+ RFD+A + + FG+   P +CTKIASRL RTYTN HGLKD 
Sbjct: 59  APNLRRIVSNPDIMKIFHFARFDVAAIRHCFGMWATPCYCTKIASRLVRTYTNHHGLKDL 118

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELLG+ I+KAQQSSDW  + L+ EQL YAA+DV++LH ++ +    L+R  + DLA S
Sbjct: 119 CYELLGVKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLDMMLEREDKQDLAES 178

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  F+  RAELDLLGW+ VDIFSH
Sbjct: 179 CFKFIPARAELDLLGWDGVDIFSH 202


>gi|162147898|ref|YP_001602359.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786475|emb|CAP56057.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score =  211 bits (538), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 103/204 (50%), Positives = 142/204 (69%), Gaps = 3/204 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +I +H GD+  +    +  +IAVDTE +GL P RDRLC+VQ+S GDG+  +++I  G  +
Sbjct: 8   SILLHRGDLADDVV--FHGSIAVDTEAMGLNPHRDRLCLVQISAGDGSAHLVQILPGTPS 65

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  ++ D    K+ H+ RFD+A+L ++ GV V PV CTKIAS+L RT+T +HGL   
Sbjct: 66  -PNLARLMADPSITKLMHFARFDVAILQHSLGVTVAPVICTKIASKLVRTFTERHGLAQL 124

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG+++SK QQ+SDW A +L+ EQ  YAASDV+HLHAL  +    L R GR DLA +
Sbjct: 125 CRELLGVDLSKQQQTSDWGAPELTPEQKAYAASDVLHLHALWTKLEVLLHREGRRDLAQA 184

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA LDLLG+E+ DIF+H
Sbjct: 185 CYDFLPTRARLDLLGYEDPDIFAH 208


>gi|103487824|ref|YP_617385.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256]
 gi|98977901|gb|ABF54052.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256]
          Length = 205

 Score =  211 bits (538), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 3/206 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           ++  HE D+P +       A+AVDTET+GL P RDRLC+VQ+S G G   ++R   G   
Sbjct: 2   SVYFHEEDLPEDVLG--PGAVAVDTETMGLNPLRDRLCLVQISDGSGDEHLVRFRPGSSY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +AP L  +L D +R K+FH+ RFDIA L    GV   PV+CTKIAS+L RTYT++HGLK+
Sbjct: 60  DAPVLKAILADPERLKLFHFARFDIAALQQALGVVTTPVYCTKIASKLVRTYTDRHGLKE 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG  +SK QQSSDW A +LS+ Q  YAASDV  LHA++     +L R GR++LA 
Sbjct: 120 LVRELLGQEVSKQQQSSDWGAAELSEAQRDYAASDVRFLHAMKEILDARLAREGRTELAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  RA LDL GW  VDIF+HS
Sbjct: 180 ACFDFLPTRAALDLAGWPEVDIFAHS 205


>gi|88607131|ref|YP_505646.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
 gi|88598194|gb|ABD43664.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
          Length = 204

 Score =  211 bits (537), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 142/204 (69%), Gaps = 3/204 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            + VH  D+P +      D +AVDTET+GL+ RRDR+C+VQLS G+G   +++   G  +
Sbjct: 2   AVFVHRNDLPHD--VDLGDMVAVDTETMGLVCRRDRVCLVQLSAGNGDAHLVKFD-GDYS 58

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ++ D    KIFH+ RFD+A + + FG+   P +CTKIASRL RTYTN HGLKD 
Sbjct: 59  APNLRKVISDPGVLKIFHFARFDVAAIRHGFGMWATPCYCTKIASRLVRTYTNHHGLKDL 118

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELLG+ I+KAQQSSDW  + L+ EQL YAA+DV++LHA++ +    L+R  + +LA +
Sbjct: 119 CYELLGVKINKAQQSSDWGREVLTAEQLSYAAADVIYLHAIKKKLDMMLEREEKQELAEA 178

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  F+  RAELDLLGW+ VDIFSH
Sbjct: 179 CFKFVPVRAELDLLGWDGVDIFSH 202


>gi|254487503|ref|ZP_05100708.1| ribonuclease D [Roseobacter sp. GAI101]
 gi|214044372|gb|EEB85010.1| ribonuclease D [Roseobacter sp. GAI101]
          Length = 204

 Score =  211 bits (537), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/184 (54%), Positives = 130/184 (70%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D ET+GL P RDRLC+VQLS GDG   +++I  GQ  APNL  +L D +  K+FH+G
Sbjct: 20  VAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQIGKGQTEAPNLCALLEDPEVLKLFHFG 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFDIA +   FG +  PV+CTKIASRL RT+T++HGL    +ELLG +ISK QQSSDW A
Sbjct: 80  RFDIAAMQNAFGAKTAPVYCTKIASRLVRTFTDRHGLAKLCQELLGTDISKQQQSSDWGA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
             L+  Q+ YAASDV++LH LR +    L R  R D+A +C +FL  RA+LDL GW + D
Sbjct: 140 AQLTQAQIDYAASDVLYLHQLRDKLNAMLIREDRMDIAQACFDFLPMRAQLDLAGWPDTD 199

Query: 203 IFSH 206
           IF+H
Sbjct: 200 IFAH 203


>gi|83944937|ref|ZP_00957303.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633]
 gi|83851719|gb|EAP89574.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633]
          Length = 204

 Score =  211 bits (536), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 105/207 (50%), Positives = 140/207 (67%), Gaps = 6/207 (2%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           TI  H GD+P   +   R    +A+DTET GL   RD LC+VQLS GDG   I++     
Sbjct: 2   TIHFHRGDLPDGLDLGKR----VAIDTETQGLSLVRDGLCLVQLSAGDGEAHIVQPDRAT 57

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            + PNL  +L D   EK+ H+ RFD+A++    GV + PVFCTKIAS+L RTYT++HGLK
Sbjct: 58  YDCPNLKALLADTGVEKLLHFARFDLAIIERDLGVTMTPVFCTKIASKLVRTYTDRHGLK 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  +E+ G+ +SK QQSSDW+A DLS+ QL YAASDV++LHA+    T  L+R GR ++A
Sbjct: 118 DVCREIAGVELSKQQQSSDWAAQDLSEAQLNYAASDVLYLHAIADGLTAMLEREGRMEMA 177

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C +FL  RA LDL+GW+  DIF+HS
Sbjct: 178 RACFDFLPSRARLDLMGWDETDIFAHS 204


>gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
 gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
          Length = 217

 Score =  210 bits (535), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 110/208 (52%), Positives = 143/208 (68%), Gaps = 7/208 (3%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT---VDIIRIAAGQ 60
           I++H+ D+P      +   +A+DTET+GL PRRDRLC+VQLS GDG    V II  + G 
Sbjct: 12  IKLHKHDLPD--GIDFGPVVAIDTETMGLDPRRDRLCLVQLSAGDGNAHCVQIIPESLGG 69

Query: 61  KNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           + A  PNL  +L      K+FH+ RFD+A+L    G+   PV CTKIA++L RT+T++HG
Sbjct: 70  RGADCPNLKALLTRPDVVKLFHFARFDVAILRAALGIECAPVRCTKIAAKLVRTFTDRHG 129

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           LKD  +ELLG+ ISK QQSSDW A +L+ EQL YAASDV+HLHAL  +    L+R GR +
Sbjct: 130 LKDLCRELLGVEISKQQQSSDWGAPELTPEQLAYAASDVLHLHALWAKLEGLLRREGRLE 189

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA SC  FL  R +LDLLG+E+ DIFSH
Sbjct: 190 LAESCFRFLPARGQLDLLGYEDPDIFSH 217


>gi|85375259|ref|YP_459321.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594]
 gi|84788342|gb|ABC64524.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594]
          Length = 206

 Score =  210 bits (534), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 4   IRVHEGDIPAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-GQK 61
           +  HE D+PA   A   DA +AVDTET+GL+ RRDRLCIVQ+S G     ++R A     
Sbjct: 3   VHFHEEDLPAGVLAG--DAPLAVDTETMGLVTRRDRLCIVQISDGGEDEHLVRFAPDSDY 60

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D  R K++H+ RFD+A + +  GV   PVFCTKIAS+LTRTYT++HGLK+
Sbjct: 61  AAPNLKALLADTNRVKLYHFARFDLAAIEHYLGVTAAPVFCTKIASKLTRTYTDRHGLKN 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG N+SK QQSSDW   D+++ Q  YAASDV +LH +R     +L+R GR+++A 
Sbjct: 121 LVEELLGENLSKQQQSSDWGGADINEAQRDYAASDVRYLHRMREILITRLEREGRTEMAQ 180

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  RA LDL GWE  DIF HS
Sbjct: 181 ACFDFLPTRARLDLAGWEEHDIFHHS 206


>gi|83591355|ref|YP_425107.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170]
 gi|83574269|gb|ABC20820.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 206

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/204 (52%), Positives = 134/204 (65%), Gaps = 3/204 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI  H GD+P+     +   IAVDTET+GL P RDRLC+VQLS GD    ++ +      
Sbjct: 6   TIHYHRGDLPS--GLTFPQGIAVDTETMGLNPHRDRLCVVQLSGGDNIAHVVHLNR-DLQ 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           AP L  +L D    KI H+GRFDIA + +  GV   PV+CTKIAS+L RT T+ HGLK  
Sbjct: 63  APVLASLLGDPSVLKIMHFGRFDIASIHHGLGVLCEPVYCTKIASKLCRTNTDSHGLKAL 122

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            K+LLG+++SK QQ+SDW A+ LS EQL YAASDV++LHAL+ +    L R GR+ LA  
Sbjct: 123 CKDLLGVDLSKHQQTSDWGAESLSPEQLTYAASDVLYLHALKARLDGLLAREGRTTLAEG 182

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL  RA LDL GWE  DIFSH
Sbjct: 183 CFRFLPTRALLDLAGWEEPDIFSH 206


>gi|326403860|ref|YP_004283942.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
 gi|325050722|dbj|BAJ81060.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
          Length = 218

 Score =  208 bits (529), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/210 (52%), Positives = 144/210 (68%), Gaps = 7/210 (3%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AA 58
            TI +H  D+P       V  +AVDTET+GL PRRDRLC+VQLS GD +  +++I   A 
Sbjct: 10  ATIHIHRHDLPDGLDLGPV--VAVDTETMGLDPRRDRLCLVQLSAGDNSAHLVQIVPPAL 67

Query: 59  GQKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
           G + A  PNL  +L      K+FH+ RFD+A+L++  GV   PV CTKIAS+L RTYT++
Sbjct: 68  GGRGADCPNLKRLLEHPGVTKLFHFARFDLAMLYHALGVTTAPVICTKIASKLVRTYTDR 127

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           HGLKD  ++L+GI ISK QQ+SDW + +LS EQ  YAASDV+HLHA+  +    L R GR
Sbjct: 128 HGLKDLCRDLVGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWARLEALLVREGR 187

Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206
            +LA +C  FL  RA+LDLLG+E+ DIFSH
Sbjct: 188 RELADACYRFLPARAKLDLLGFEDPDIFSH 217


>gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 217

 Score =  208 bits (529), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 107/208 (51%), Positives = 142/208 (68%), Gaps = 7/208 (3%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT---VDIIRIAAGQ 60
           I +H  D+P      +  ++AVDTET+GL P RDRLC+VQLS GDGT   V II  + G 
Sbjct: 10  ITLHRNDLPDNVT--FTGSVAVDTETMGLNPHRDRLCLVQLSAGDGTAHLVQIIPTSLGG 67

Query: 61  K--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           K  + PNL  +L D    KI H+ RFD+A+L +  G+ V PV CTKIA+RL RT+T++HG
Sbjct: 68  KGYDCPNLKRVLADPSITKIMHFARFDVAILQHALGITVSPVVCTKIAARLVRTFTDRHG 127

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L    +++LG+ +SK QQ+SDW A +L  EQL YAASDV++LHAL  + +  L R GR +
Sbjct: 128 LAALCRDMLGVELSKQQQTSDWGAKELKPEQLAYAASDVLYLHALWDKMSALLDREGRRE 187

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA +C +FL  RA LDLLG+E+ DIFSH
Sbjct: 188 LAQACYDFLPARARLDLLGYEDPDIFSH 215


>gi|83313031|ref|YP_423295.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
 gi|82947872|dbj|BAE52736.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
          Length = 203

 Score =  207 bits (526), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 106/204 (51%), Positives = 137/204 (67%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+  H+ D+P        + +A+D+ET+GL  +RDRLC+VQLS GDG   ++     + N
Sbjct: 2   TVFYHKNDLPD--GLDLGNLVAIDSETMGLNLQRDRLCVVQLSAGDGHAHVVHYPKPEWN 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           +PNLV ML D K  K+FH+ RFD+A++    GVR  PVFCTKIAS+LTRT T  H LK  
Sbjct: 60  SPNLVRMLADSKVTKLFHFARFDVAMIRRYLGVRCTPVFCTKIASKLTRTNTEGHSLKVL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            KE L I++SK QQSSDW A +L+ +QL YAASDV++LH L+ +    L R GR  LA +
Sbjct: 120 CKEFLNIDLSKLQQSSDWGAPELTADQLAYAASDVLYLHQLKDRLDALLDREGRRALAEA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL DRAELDL GW+  DIFSH
Sbjct: 180 CFAFLPDRAELDLAGWDAEDIFSH 203


>gi|148260666|ref|YP_001234793.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
 gi|146402347|gb|ABQ30874.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
          Length = 218

 Score =  206 bits (525), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/210 (52%), Positives = 143/210 (68%), Gaps = 7/210 (3%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AA 58
            TI +H  D+P       V  +AVDTET+GL PRRDRLC+VQLS GD +  +++I   A 
Sbjct: 10  ATIHIHRHDLPDGLDLGPV--VAVDTETMGLDPRRDRLCLVQLSAGDNSAHLVQIVPPAL 67

Query: 59  GQKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
           G + A  PNL  +L      K+FH+ RFD+A+L +  GV   PV CTKIAS+L RTYT++
Sbjct: 68  GGRGADCPNLKRLLEHPGVTKLFHFARFDLAMLHHALGVTTAPVICTKIASKLVRTYTDR 127

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           HGLKD  ++L+GI ISK QQ+SDW + +LS EQ  YAASDV+HLHA+  +    L R GR
Sbjct: 128 HGLKDLCRDLVGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWARLEALLVREGR 187

Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206
            +LA +C  FL  RA+LDLLG+E+ DIFSH
Sbjct: 188 RELADACYRFLPARAKLDLLGFEDPDIFSH 217


>gi|114797270|ref|YP_758935.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
 gi|114737444|gb|ABI75569.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
          Length = 204

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/207 (49%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I +H+GD+P   +   V  IAVDTE +GL   RD L +VQ+S GDGT  ++++    
Sbjct: 1   MNQITLHKGDLPEGLSLGPV--IAVDTEAMGLNAMRDNLTLVQVSSGDGTAHLVQLTR-D 57

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            + PNL  +L D K  KIFH+ RFD+ ++    G+   P++CTKIASRL RTYT++HGLK
Sbjct: 58  YDCPNLKALLTDPKVLKIFHFARFDVVMMKRWMGITCAPIWCTKIASRLARTYTDRHGLK 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  +E+ G+++SKAQQSSDW  D L+D Q+QYAASDV++LH ++      L+R GR +LA
Sbjct: 118 DVAREVAGVDMSKAQQSSDWGQDKLTDAQIQYAASDVLYLHQIKAGLEAMLEREGRLELA 177

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C +FL  RA+LDL GW + DIF+HS
Sbjct: 178 QACFDFLPIRADLDLAGWPDEDIFAHS 204


>gi|329114438|ref|ZP_08243200.1| Ribonuclease D [Acetobacter pomorum DM001]
 gi|326696514|gb|EGE48193.1| Ribonuclease D [Acetobacter pomorum DM001]
          Length = 256

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/208 (50%), Positives = 142/208 (68%), Gaps = 7/208 (3%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT---VDIIRIAAGQ 60
           I +H  D+P      +  ++AVDTET+GL P RDRLC+VQLS GDGT   V II  + G 
Sbjct: 49  ITLHRNDLPDNVT--FTGSVAVDTETMGLNPHRDRLCLVQLSAGDGTAHLVQIIPTSLGG 106

Query: 61  K--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           K  + PNL  ++ D    KI H+ RFD+A+L +  G+ V PV CTKIA+RL RT+T++HG
Sbjct: 107 KGYDCPNLKRVMADPSITKIMHFARFDVAILQHALGITVSPVVCTKIAARLVRTFTDRHG 166

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L    +++LG+ +SK QQ+SDW A +L  EQL YAASDV++LHAL  + +  L R GR +
Sbjct: 167 LAALCRDMLGVELSKQQQTSDWGALELKPEQLAYAASDVLYLHALWDKMSALLDREGRRE 226

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA +C +FL  RA LDLLG+E+ DIFSH
Sbjct: 227 LAQACYDFLPARARLDLLGYEDPDIFSH 254


>gi|46201483|ref|ZP_00054962.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 203

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 137/204 (67%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+  H+ D+P        + +A+D+ET+GL  +RDRLC+VQLS GDG   ++     + N
Sbjct: 2   TVFYHKNDLPD--GLDLGNLVAIDSETMGLNLQRDRLCVVQLSAGDGHAHVVHYPKPEWN 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           +PNLV ML D K  K+FH+ RFD+A++    GVR  P+FCTKIAS+LTRT T  H LK  
Sbjct: 60  SPNLVRMLADPKVTKLFHFARFDVAMIRKYLGVRCNPLFCTKIASKLTRTNTEGHSLKVL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            KE L I++SK QQSSDW A +L+ +QL YAASDV++LH L+ +    L R GR  LA +
Sbjct: 120 CKEFLNIDLSKLQQSSDWGAPELNADQLAYAASDVLYLHQLKDRLDMLLDREGRRALAEA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL DRAELDL GW+  DIFSH
Sbjct: 180 CFAFLPDRAELDLAGWDAEDIFSH 203


>gi|149185091|ref|ZP_01863408.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21]
 gi|148831202|gb|EDL49636.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21]
          Length = 207

 Score =  204 bits (518), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 143/206 (69%), Gaps = 3/206 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-GQK 61
            +  HE D+P +  A     +AVDTET+GL+  RDRLC+VQ+S G+G   ++R       
Sbjct: 2   AVHFHEEDLPEDVLAD--GPVAVDTETMGLVTIRDRLCVVQISDGNGDEHLVRFGPDSDY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +APNL  +L D +R K+FH+ RFD+A + Y  GV   P +CTKIAS++ RT+T++HGLK+
Sbjct: 60  DAPNLKAVLGDPERLKLFHFARFDLAAIEYYLGVTAAPCYCTKIASKMVRTFTDRHGLKN 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG ++SKAQQSSDW    L+D Q  YAASDV  LH ++ +   +L+R GR++LA 
Sbjct: 120 LVEELLGESMSKAQQSSDWGGPVLNDAQRDYAASDVRFLHRMKEELDRRLEREGRTELAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  RA LD+LGW++ DIFSH+
Sbjct: 180 ACFDFLPARAHLDILGWDDHDIFSHA 205


>gi|91205563|ref|YP_537918.1| ribonuclease D [Rickettsia bellii RML369-C]
 gi|157827279|ref|YP_001496343.1| ribonuclease D [Rickettsia bellii OSU 85-389]
 gi|91069107|gb|ABE04829.1| Ribonuclease D [Rickettsia bellii RML369-C]
 gi|157802583|gb|ABV79306.1| Ribonuclease D [Rickettsia bellii OSU 85-389]
          Length = 203

 Score =  200 bits (509), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 98/204 (48%), Positives = 135/204 (66%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +++ D+P +        +A+DTET+GL   RD+LC++Q S G+G   ++       N
Sbjct: 2   TITLYQNDLPDDFELE--GDLAIDTETMGLNLYRDKLCLLQFSNGNGDAHLVHFLNQNYN 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D++R KIFH+ RFD+A +    G+ +  +FCTKI+S+L RTYT  HGLKD 
Sbjct: 60  APNLKNLLSDKERCKIFHFARFDLAAIKKYLGIDLENIFCTKISSKLVRTYTESHGLKDI 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG+NISK QQSS W AD+LS +Q +YAA DV++LH LR    E L +  R +LA  
Sbjct: 120 CRELLGVNISKQQQSSYWGADNLSSDQQEYAAKDVLYLHKLREHLIEMLVKENRFELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDL+GW+ VDIF+H
Sbjct: 180 IFKFLPTRANLDLVGWDEVDIFTH 203


>gi|294084811|ref|YP_003551571.1| 3'- 5' exonuclease family protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664386|gb|ADE39487.1| 3'- 5' exonuclease family protein, putative [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 203

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/204 (47%), Positives = 141/204 (69%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            + +++ D+PA+     +  +A+DTET+GL  +RDRLC+VQLS GDG   +++IA   K 
Sbjct: 2   AVNIYKDDLPADIDLGSI--VAIDTETMGLKTQRDRLCLVQLSSGDGNAHLVQIAQPAKP 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           +P L  +L D    K+FH+ RFD+A L +  G     ++CTKIAS+L RTYT++HGLK+ 
Sbjct: 60  SPVLAALLADPAVTKLFHFARFDLAALIHYIGAVEGDIYCTKIASKLARTYTDRHGLKEL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL I+ISK QQSSDW A+ L+ +Q  YAA DV++LHA+R + +  L+R  R  LA +
Sbjct: 120 CRELLQIDISKQQQSSDWGAETLTIDQQNYAAGDVLYLHAIREKLSYMLERENRMALANA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL +RA+LDL+G+ +VDIF H
Sbjct: 180 CFGFLPERAQLDLIGFGDVDIFHH 203


>gi|42520711|ref|NP_966626.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410451|gb|AAS14560.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 206

 Score =  196 bits (498), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +++ D+PA      + +IAVDTE +GL+  RDRLC+VQLS  DG   ++++      A
Sbjct: 3   IFLYKDDLPASSIPDDIRSIAVDTEAMGLLHSRDRLCLVQLSFNDGNAHLVQLK-NDYTA 61

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D+   KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+  
Sbjct: 62  PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELL   ++K QQSSDW  ++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C
Sbjct: 122 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 181

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R ELDL+GWENVDIF+H
Sbjct: 182 FEFLPTRIELDLMGWENVDIFNH 204


>gi|225630598|ref|YP_002727389.1| 3'-5' exonuclease [Wolbachia sp. wRi]
 gi|225592579|gb|ACN95598.1| 3'-5' exonuclease [Wolbachia sp. wRi]
          Length = 206

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +++ D+PA      V +IAVDTE +GL+  RDRLC+VQLS  DG   ++++      A
Sbjct: 3   IFLYKDDLPASSIPDDVRSIAVDTEAMGLLHGRDRLCLVQLSFNDGNAHLVQLK-NDYTA 61

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D+   KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+  
Sbjct: 62  PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELL   ++K QQSSDW  ++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C
Sbjct: 122 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 181

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R ELDL+GWENVDIF+H
Sbjct: 182 FEFLPTRIELDLMGWENVDIFNH 204


>gi|58698542|ref|ZP_00373443.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534924|gb|EAL59022.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 234

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +++ D+PA      V +IAVDTE +GL+  RDRLC+VQLS  DG   ++++      A
Sbjct: 31  IFLYKDDLPASSIPDDVRSIAVDTEAMGLLHGRDRLCLVQLSFNDGNAHLVQLK-NDYTA 89

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D+   KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+  
Sbjct: 90  PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 149

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELL   ++K QQSSDW  ++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C
Sbjct: 150 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 209

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R ELDL+GWENVDIF+H
Sbjct: 210 FEFLPTRIELDLMGWENVDIFNH 232


>gi|117923642|ref|YP_864259.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
 gi|117607398|gb|ABK42853.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
          Length = 213

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/207 (49%), Positives = 132/207 (63%), Gaps = 4/207 (1%)

Query: 3   TIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           TI     D+      RY+ +  +AVDTET+GL   RDRLC+VQ+    G V +++I   Q
Sbjct: 7   TIHTFIDDLDEAQFQRYMKSPFLAVDTETMGLDINRDRLCVVQMCDVTGEVSVVQIRNYQ 66

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP L  ++   + EKIFH+ RFD+A +     + ++PVFCTKIAS+L RTYT  HGLK
Sbjct: 67  --APRLKALMEAPEVEKIFHFARFDLATMKRWLDIEIKPVFCTKIASKLVRTYTGSHGLK 124

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  +ELLG+ + K QQSSDW A+ L+ EQLQYAASDV+HL  +R +  E L R GR  LA
Sbjct: 125 DVSQELLGVVMDKQQQSSDWGAEQLTPEQLQYAASDVIHLVEIRARLVEMLAREGRLQLA 184

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
                FL  R  LDLLGW N DIFSH+
Sbjct: 185 DEIMRFLPTRVALDLLGWNNHDIFSHA 211


>gi|58584866|ref|YP_198439.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419182|gb|AAW71197.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 206

 Score =  194 bits (494), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I V++ D+PA      V +IAVDTE +GL+  RDRLC++QLS  DG   +I+       A
Sbjct: 3   IFVYKDDLPASSIPDNVRSIAVDTEAMGLLHVRDRLCLIQLSFNDGNAHLIQFK-NDYAA 61

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D+   KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+  
Sbjct: 62  PNLRKILGDKNITKIFHFARFDVSIICYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELL   ++K QQSSDW +++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C
Sbjct: 122 LELLDTKLNKQQQSSDWGSENLTDKQKSYAASDVLYLHKIKEKLDLMLERENRKELAQKC 181

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R ELDL+GWE++DIF+H
Sbjct: 182 FEFLPIRVELDLMGWEDMDIFNH 204


>gi|126660170|ref|ZP_01731288.1| 3'-5' exonuclease [Cyanothece sp. CCY0110]
 gi|126618535|gb|EAZ89286.1| 3'-5' exonuclease [Cyanothece sp. CCY0110]
          Length = 214

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/208 (48%), Positives = 136/208 (65%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
              +V + D+ +E   RY+  DAIA+DTET+GL+P+RDRLC+VQL    G V  IRI   
Sbjct: 9   NNFQVCDRDLTSETLDRYLQTDAIAIDTETMGLIPQRDRLCLVQLCDSSGYVTAIRIEKE 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           QK APNL  +L ++   KIFHY RFD+A   Y FG+   P+FCTK+AS+L RTYT  HGL
Sbjct: 69  QKEAPNLKKLLENQSIVKIFHYARFDVAQFKYNFGIDTAPIFCTKVASKLARTYTGSHGL 128

Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K  ++E+ G+ + K+ QSSDW ++ +LS+ QL YAA+DV +L  LR Q    LQR  R +
Sbjct: 129 KALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLREQLITMLQREERWE 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           +A  C N +    ELDL+ ++  DIF H
Sbjct: 189 IAQKCMNVISVFVELDLMYYK--DIFEH 214


>gi|190571105|ref|YP_001975463.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213019628|ref|ZP_03335434.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357377|emb|CAQ54811.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995050|gb|EEB55692.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 206

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 132/203 (65%), Gaps = 1/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +++ D+PA      + +IAVDTE +GL+  RDRLC+VQLS  DG   +++       A
Sbjct: 3   IFIYKDDLPASAIPNDIKSIAVDTEAMGLLHSRDRLCLVQLSFNDGNAHLVQFK-NDYTA 61

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D+   KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+  
Sbjct: 62  PNLRKILEDKNITKIFHFARFDVSIIHYYLQTWALPCYCTKIASRLVRTYTDNHSLKELC 121

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELL I ++K QQSSDW  ++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C
Sbjct: 122 LELLDIKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHKIKEKLDLMLERENRKELAEKC 181

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R ELD +GW +VDIF+H
Sbjct: 182 FEFLPTRIELDSMGWGSVDIFNH 204


>gi|157825707|ref|YP_001493427.1| ribonuclease D [Rickettsia akari str. Hartford]
 gi|157799665|gb|ABV74919.1| Ribonuclease D [Rickettsia akari str. Hartford]
          Length = 203

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P          IA+DTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   TIKIYQNDLPDNFELE--GDIAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFVNQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKALLLDKTRCKIFHFARFDLASIKQYLSIDLENIFCTKISSKLVRTYTDNHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W  D+LS EQ +YAA DV++LH L+    + L R  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGTDNLSSEQKEYAAKDVLYLHQLKDMLQKMLLRENRLELAHD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDL+GW  +DIF H
Sbjct: 180 IFRFLPTRANLDLIGWNEIDIFMH 203


>gi|157803820|ref|YP_001492369.1| ribonuclease D [Rickettsia canadensis str. McKiel]
 gi|157785083|gb|ABV73584.1| ribonuclease D [Rickettsia canadensis str. McKiel]
          Length = 203

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 131/204 (64%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P     R    +A+DTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   TIKIYQNDLPNN--FRLGGDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFENQNYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKALLSDKSRCKIFHFARFDLAAIKKYLEIELENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+    + L +  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWRADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRFELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              F+  RA LDLLGW  +DIF H
Sbjct: 180 IFRFVPTRANLDLLGWNEIDIFMH 203


>gi|86608835|ref|YP_477597.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557377|gb|ABD02334.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 210

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/185 (52%), Positives = 129/185 (69%), Gaps = 3/185 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTET+GL+P+RDRLC+VQ++   G V ++R++ G K AP L  +L+    EKIFHY 
Sbjct: 27  LAVDTETMGLIPQRDRLCVVQIANSAGEVVLLRLSRGVKQAPFLAQLLMAPSIEKIFHYA 86

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           RFD+A+L Y  G+R  PVFCTKIAS+L RTYT++HGLKD + EL G+ ++K  QSSDW A
Sbjct: 87  RFDLAMLRYHLGIRAWPVFCTKIASKLARTYTSKHGLKDVVSELCGVELNKTAQSSDWGA 146

Query: 143 -DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201
              LS EQL+YAA+DV +L  +R +  E L+R  R +LA  C   L    ELDLLG+ NV
Sbjct: 147 VHALSAEQLEYAANDVRYLIPVRHKLAEMLRREERWELAQQCFQHLPTLVELDLLGFSNV 206

Query: 202 DIFSH 206
             F H
Sbjct: 207 --FEH 209


>gi|157964505|ref|YP_001499329.1| ribonuclease D [Rickettsia massiliae MTU5]
 gi|157844281|gb|ABV84782.1| Ribonuclease D [Rickettsia massiliae MTU5]
          Length = 203

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P          +A+DTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   TIKIYQNDLPNNFELE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+    + L +  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
             +FL  RA LDL+GW  +DIF +
Sbjct: 180 IFHFLPTRANLDLIGWNEIDIFMY 203


>gi|119513593|ref|ZP_01632605.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
 gi|119461746|gb|EAW42771.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
          Length = 189

 Score =  191 bits (485), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/187 (52%), Positives = 131/187 (70%), Gaps = 3/187 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           DAIAVDTET+GL+P+RDRLC+VQL   +G V  IRIA GQ  APNL  ++      KIFH
Sbjct: 5   DAIAVDTETMGLLPQRDRLCLVQLCNPEGKVTAIRIAKGQTEAPNLKILMEAVNVVKIFH 64

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
           + RFDIA L +  G++V+PVFCTKIAS+L RTYTN+HGLK+ ++EL  I + K+ QSSDW
Sbjct: 65  FARFDIATLRHNLGIQVQPVFCTKIASKLARTYTNRHGLKEVVQELEHIELDKSSQSSDW 124

Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199
            +A +LS+ QL YAA+DV +L ++R +  E LQR  R ++A  C   L     LDLL ++
Sbjct: 125 GNAANLSEAQLNYAANDVRYLISVRQKLMEMLQREERWEIAQECFQVLPTLVTLDLLQFK 184

Query: 200 NVDIFSH 206
             D+F H
Sbjct: 185 --DLFEH 189


>gi|67459045|ref|YP_246669.1| ribonuclease D [Rickettsia felis URRWXCal2]
 gi|67004578|gb|AAY61504.1| Ribonuclease D [Rickettsia felis URRWXCal2]
          Length = 203

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            I++++ D+P          IA+DTET+GL   RD+LC++Q S G+G   ++       +
Sbjct: 2   NIKIYQDDLPNNFELE--GDIAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFVNQDYS 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKALLLDKTRCKIFHFARFDLAAIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W  D+LS EQ +YAA DV++LH L+    + L R  R +LA  
Sbjct: 120 CRELLSINISKQQQSSYWGTDNLSSEQKEYAAKDVLYLHQLKDILQKMLLRENRLELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDL+GW  +DIF H
Sbjct: 180 IFRFLPTRANLDLIGWNEIDIFMH 203


>gi|157828459|ref|YP_001494701.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933177|ref|YP_001649966.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
 gi|157800940|gb|ABV76193.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908264|gb|ABY72560.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
          Length = 203

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 131/204 (64%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P          +A+DTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   TIKIYQNDLPNNFTLE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APN+  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNVKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+    + L +  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDL+GW  +DIF H
Sbjct: 180 IFRFLPIRANLDLIGWNEIDIFMH 203


>gi|15892510|ref|NP_360224.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|34580497|ref|ZP_00141977.1| ribonuclease D [Rickettsia sibirica 246]
 gi|229586700|ref|YP_002845201.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238650888|ref|YP_002916744.1| ribonuclease D [Rickettsia peacockii str. Rustic]
 gi|15619670|gb|AAL03125.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|28261882|gb|EAA25386.1| ribonuclease D [Rickettsia sibirica 246]
 gi|228021750|gb|ACP53458.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238624986|gb|ACR47692.1| ribonuclease D [Rickettsia peacockii str. Rustic]
          Length = 203

 Score =  191 bits (484), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P     +    +A+DTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   TIKIYQNDLPNN--FKLEGDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APN+  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNVKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+    + L +  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDL+GW  +DIF H
Sbjct: 180 IFRFLPIRANLDLIGWNEIDIFMH 203


>gi|239947292|ref|ZP_04699045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921568|gb|EER21592.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 203

 Score =  190 bits (483), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 129/204 (63%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P          +A+DTET+GL   RD+LC++Q S G+G    +        
Sbjct: 2   TIKIYQNDLPNNFELE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHFVHFTNQDYI 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGL D 
Sbjct: 60  APNLKALLLDKTRCKIFHFARFDLAFIKKYLSIDLENIFCTKISSKLVRTYTDSHGLNDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+    + L +  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDLLGW  +DIF H
Sbjct: 180 IFRFLPTRANLDLLGWNEIDIFMH 203


>gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
 gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
          Length = 209

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 137/206 (66%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            +V + D+      +Y++  AIAVDTET+GL+P+RDRLC+VQL   +G V +IRIA GQ 
Sbjct: 6   FQVSDRDLSDAALGQYLESTAIAVDTETMGLLPQRDRLCLVQLCNLEGKVTVIRIAKGQT 65

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +       K+FH+ RFDIA L    G++V PVFCTKIAS+L RTYTN+HGLKD
Sbjct: 66  EAPNLKKLFEAANVVKVFHFARFDIATLRANLGIQVSPVFCTKIASKLARTYTNRHGLKD 125

Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++EL  + + K+ QSSDW +A  LS+ QL YAA+DV +L +++ + TE L+R  R  +A
Sbjct: 126 VVQELEKVELDKSSQSSDWGNAVSLSEAQLSYAANDVRYLLSVQQKLTEMLKREERWKIA 185

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C  FL     LDLL ++  D+F H
Sbjct: 186 QECFEFLPTIVSLDLLQFK--DLFEH 209


>gi|86605802|ref|YP_474565.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554344|gb|ABC99302.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
          Length = 210

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/186 (51%), Positives = 129/186 (69%), Gaps = 3/186 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTET+GL+P+RDRLC+VQ++   G V ++R++ G K AP+L  +L D   EKIFHY 
Sbjct: 27  LAVDTETMGLIPQRDRLCVVQIANAAGEVVLLRLSRGVKQAPHLARLLTDPNIEKIFHYA 86

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141
           RFD+A+L Y  G++  PVFCTKIAS+L RTYT++H LKD + EL G+ ++K  QSSDW +
Sbjct: 87  RFDLAMLRYHLGIQAWPVFCTKIASKLARTYTSKHSLKDVVGELCGVELNKTAQSSDWGN 146

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201
              LS EQL+YAA+DV +L  +R +  + LQR  R +LA  C   L    ELDLLG+ NV
Sbjct: 147 VQALSPEQLEYAANDVRYLIPVRHKLAQMLQREERWELAQRCFQHLPTLVELDLLGYGNV 206

Query: 202 DIFSHS 207
             F H 
Sbjct: 207 --FEHQ 210


>gi|51473610|ref|YP_067367.1| ribonuclease D [Rickettsia typhi str. Wilmington]
 gi|51459922|gb|AAU03885.1| ribonuclease D [Rickettsia typhi str. Wilmington]
          Length = 203

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 131/204 (64%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            I++++ D+P     +    IAVDTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   NIKIYQNDLPNN--FKLEGDIAVDTETMGLNIHRDKLCLLQFSNGNGAAHLVHFINQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W  D+LS EQ +YAA DV++LH L+    + L R  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGTDNLSLEQKEYAAKDVLYLHQLKDILQKMLFRENRLELAHE 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  R  LDL+GW+ +DIF+H
Sbjct: 180 IFRFLPTRVNLDLIGWDQIDIFTH 203


>gi|58040278|ref|YP_192242.1| ribonuclease D [Gluconobacter oxydans 621H]
 gi|58002692|gb|AAW61586.1| Ribonuclease D [Gluconobacter oxydans 621H]
          Length = 214

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/210 (47%), Positives = 139/210 (66%), Gaps = 7/210 (3%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AA 58
             I +++GD+P +     +  +A+DTET+GL P RDRLC+VQLS GDG   +++I   + 
Sbjct: 5   NAIHLYDGDLPDDFDLGPL--VAIDTETMGLNPHRDRLCLVQLSAGDGEAHLVQIKPVSM 62

Query: 59  GQK--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
           G +  + PNL  +L D+   K+ H+ RFD+AVL   F + +  V CTKIA+RL  T+T++
Sbjct: 63  GGRGYDCPNLKALLTDDSVTKLMHFARFDVAVLQNAFNITIPSVICTKIAARLVYTFTDR 122

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           HGL    ++LLG+ ISK QQSSDW A  L+ +QL+YAASDV++LHAL  +    L R  R
Sbjct: 123 HGLAYLCRDLLGVEISKHQQSSDWGAQTLTPDQLRYAASDVLYLHALWDKLEAMLIRENR 182

Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206
            DLA +C +FL  R  LDL+G+E  DIFSH
Sbjct: 183 RDLAQACYDFLPARCRLDLMGYEEPDIFSH 212


>gi|282899306|ref|ZP_06307275.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195763|gb|EFA70691.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 209

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/206 (47%), Positives = 139/206 (67%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            +V +GD+     + Y+  DA+AVDTET+GL+P+RDRLC+VQL   +G V  +RIA GQ 
Sbjct: 6   FQVVDGDLDYPTLSEYLRSDALAVDTETMGLLPQRDRLCLVQLCNPEGKVTAVRIAKGQT 65

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +APNL  +L      K+FH+ RFD+A L +   + V+PVFCTKIAS+L RTYTN+HGLK+
Sbjct: 66  HAPNLQQLLESTDVVKVFHFARFDLATLRHNLKIHVQPVFCTKIASKLARTYTNRHGLKE 125

Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++EL  + + K+ QSSDW +   LSD QL YAA+DV +L +L+ + ++ LQR  R  LA
Sbjct: 126 LVQELEQVELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREERWQLA 185

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C +FL     LDLL ++  ++F H
Sbjct: 186 QECFSFLPTLVSLDLLQFK--ELFEH 209


>gi|220907657|ref|YP_002482968.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
 gi|219864268|gb|ACL44607.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
          Length = 217

 Score =  188 bits (477), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/208 (47%), Positives = 141/208 (67%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           T  +V++ D+PA+  + ++  D IAVDTET+GL P+RDRLC+VQL+   G + +IRI  G
Sbjct: 12  TDFQVYDRDLPADTLSYFLTADRIAVDTETMGLKPQRDRLCLVQLAHPQGLITVIRIGQG 71

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q++AP+L  +L      K+FH+ RFDI  L Y   + V+P+FCTKIAS+L RTY+ +HGL
Sbjct: 72  QRSAPHLKQLLEHPGTTKVFHFARFDITTLRYHLDIWVQPLFCTKIASKLARTYSPRHGL 131

Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           KD ++EL G+ + K  QSSDW + ++L++EQL+YA++DV +L A + +  E LQR  R  
Sbjct: 132 KDLIRELEGVELDKTVQSSDWGNPNNLTEEQLRYASNDVRYLLAAQAKLVEMLQRENRWQ 191

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C + L   A LDLL +E   IF H
Sbjct: 192 LAQECFHCLPTLASLDLLEFEA--IFEH 217


>gi|254422868|ref|ZP_05036586.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
 gi|196190357|gb|EDX85321.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
          Length = 207

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 104/209 (49%), Positives = 136/209 (65%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M    V + D+  +   RY+  DAIAVDTET+GL P RDRLC++QL    G V  IR   
Sbjct: 1   MENFEVCDYDLTPQLLERYIQADAIAVDTETMGLNPLRDRLCLIQLCDPGGYVCAIRTER 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ +APNL  +L ++   KIFH+ RFD+A L +  G+   PVFCTKIAS++ RTY+  HG
Sbjct: 61  GQSSAPNLKQLLEEKNITKIFHFARFDLATLQHHLGIVTAPVFCTKIASKIARTYSPSHG 120

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  +KEL+GI + K+QQSSDW +A  LSDEQL YAA+DV +L+ L+ + TE L+R GR 
Sbjct: 121 LKSLVKELIGIELDKSQQSSDWGNAAALSDEQLSYAANDVRYLYVLQNKLTEMLKREGRW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C + L    ELDL  + +V  F H
Sbjct: 181 TLAKQCLDCLPVFVELDLRQFGSV--FEH 207


>gi|282897776|ref|ZP_06305775.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
 gi|281197455|gb|EFA72352.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
          Length = 209

 Score =  187 bits (475), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 98/206 (47%), Positives = 138/206 (66%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            +V +GD+     + Y+  DA+AVDTET+GL+P+RDRLC+VQL   +G V  +RIA GQ 
Sbjct: 6   FQVLDGDLDHPTLSEYLRSDALAVDTETMGLVPQRDRLCLVQLCNPEGKVTAVRIAKGQT 65

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +APNL  +L      K+FH+ RFD+A L +   + V+PVFCTKIAS+L RTYTN+HGLK+
Sbjct: 66  HAPNLQQLLESTHVVKVFHFARFDLATLRHNLKIYVQPVFCTKIASKLARTYTNRHGLKE 125

Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++EL  + + K+ QSSDW +   LSD QL YAA+DV +L +L+ + ++ LQR  R  L 
Sbjct: 126 LVQELEQLELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREERWQLV 185

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C +FL     LDLL ++  D+F H
Sbjct: 186 QECFSFLPTLVSLDLLQFK--DLFEH 209


>gi|15604287|ref|NP_220803.1| hypothetical protein RP422 [Rickettsia prowazekii str. Madrid E]
 gi|3860979|emb|CAA14879.1| unknown [Rickettsia prowazekii]
 gi|292572036|gb|ADE29951.1| Ribonuclease D [Rickettsia prowazekii Rp22]
          Length = 203

 Score =  187 bits (475), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            I++++ D+P+    +    IAVDTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   NIKIYQNDLPSN--FKLEGDIAVDTETMGLNIHRDKLCLLQFSNGNGEAHLVHFINQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKMLLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W  D LS EQ +YAA DV++LH L+    + L R  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGTDHLSLEQKEYAAKDVLYLHQLKDILQKMLLRENRLELAHD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  R  LDL+GW+ +DIF H
Sbjct: 180 IFRFLPTRVHLDLIGWDQIDIFMH 203


>gi|298491354|ref|YP_003721531.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
 gi|298233272|gb|ADI64408.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
          Length = 209

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/206 (48%), Positives = 137/206 (66%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            +V + D+ A   + Y+  +AIAVDTET+GL+P+RDRLC+VQL    G V  I IA GQ 
Sbjct: 6   FQVSDRDLDAASLSEYLQSEAIAVDTETMGLLPQRDRLCLVQLCNSQGKVTAICIAKGQT 65

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L      K+FH+ RFD+A L +   ++V+PVFCTKIAS+L RTYTN HGLKD
Sbjct: 66  EAPNLKQLLEATHILKVFHFARFDVATLRHNLEIQVQPVFCTKIASKLARTYTNLHGLKD 125

Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++EL  + + K+ QSSDW +A +LS+ QL YAA+DV +L  ++ + T+ L+R GR +LA
Sbjct: 126 VVQELEQVELDKSAQSSDWGNAVNLSETQLSYAANDVRYLLNVQQKLTQMLEREGRWELA 185

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   L     LDLL ++  D+F H
Sbjct: 186 QQCFQVLPTLVSLDLLQFK--DLFEH 209


>gi|67921652|ref|ZP_00515170.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
 gi|67856764|gb|EAM52005.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
          Length = 214

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/208 (46%), Positives = 133/208 (63%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
              +V + D+ +E   RY+  DA+A+DTET+GL+P+RDRLC+VQL    G V  IRI  G
Sbjct: 9   NNFQVCDRDLSSETLERYLKADALAIDTETMGLVPQRDRLCLVQLCDPSGYVTAIRIERG 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q  APNL  +L ++   KIFHY RFD+    Y F V   P+FCTK+AS+L RTYT  HGL
Sbjct: 69  QTEAPNLKQLLENKNIVKIFHYARFDVGQFKYNFSVETDPIFCTKVASKLARTYTGSHGL 128

Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K  ++EL G+ + K+ QSSDW ++ +LS+ QL YAA+DV +L  LR Q    L+R  R +
Sbjct: 129 KSLVQELEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIQLREQLITMLKREERWE 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           +A  C   +    ELDL+ ++  DIF H
Sbjct: 189 IAQKCMKVIPLFVELDLMYYK--DIFDH 214


>gi|307151178|ref|YP_003886562.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
 gi|306981406|gb|ADN13287.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
          Length = 209

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 102/209 (48%), Positives = 133/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V EGD+  +  A+Y+  +AIAVDTET+GL+P RDRLC+VQL    G V  IRIA 
Sbjct: 3   LDNFQVLEGDLSDDILAQYLQAEAIAVDTETMGLIPHRDRLCLVQLCDPTGYVTAIRIAK 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQK AP L  ++ +    K+FH+ RFD+A L +  G+   P+FCTKIAS+L RTYT+ HG
Sbjct: 63  GQKEAPKLKQLMENNHSIKVFHFARFDVAQLRHHLGIETTPIFCTKIASKLARTYTSSHG 122

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  + EL GI + K  QSSDW +A +LS+EQL YAA+DV +L  L+ +    LQR  R 
Sbjct: 123 LKSLVLELEGIELDKTAQSSDWGNAANLSEEQLSYAANDVRYLLGLKQKLITMLQREDRW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C   L     LDLL + NV  F H
Sbjct: 183 QLAQDCFQCLPVIVSLDLLLYPNV--FEH 209


>gi|218440719|ref|YP_002379048.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
 gi|218173447|gb|ACK72180.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
          Length = 209

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 133/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+  E  +RY+  DAIAVDTET+GL P RDRLC++QL   +G V  IR+  
Sbjct: 3   LDNFKVLQEDLSDEILSRYLKADAIAVDTETMGLNPHRDRLCLIQLCDPEGYVTAIRVTK 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ+ AP L  ++      K+FH+ RFD+A L + FG+   P+FCTKIAS+L RTYT+ HG
Sbjct: 63  GQQEAPKLKQLMEASNITKVFHFARFDVAQLRHHFGIETTPIFCTKIASKLARTYTSSHG 122

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  + EL G+ + K  QSSDW +AD LS+EQL YAA+DV +L  ++ +    L R  R 
Sbjct: 123 LKSLVLELEGVELDKTAQSSDWGNADKLSEEQLSYAANDVRYLLGVKEKLISMLNRENRM 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA +C N L     LDL  ++N  IF H
Sbjct: 183 ELARNCFNCLPVLVSLDLQFYQN--IFEH 209


>gi|172035932|ref|YP_001802433.1| ribonuclease D [Cyanothece sp. ATCC 51142]
 gi|171697386|gb|ACB50367.1| ribonuclease D [Cyanothece sp. ATCC 51142]
          Length = 214

 Score =  184 bits (466), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 132/206 (64%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            +V + D+  E   RY+ A  IA+DTET+GL+P+RDRLC+VQL    G V  IRI  GQ+
Sbjct: 11  FQVCDRDLSPETLDRYLQAKAIAIDTETMGLIPQRDRLCLVQLCDPSGYVTAIRIEKGQQ 70

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            A NL  +L ++   KIFHY RFD+A   Y F +   P+FCTK+AS+L RTYT  HGLK 
Sbjct: 71  TAENLKQLLENQNIIKIFHYARFDVAQFKYNFAIETEPIFCTKVASKLARTYTGSHGLKA 130

Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++E+ G+ + K+ QSSDW ++ +LS+ QL YAA+DV +L  L+ Q    LQR  R +LA
Sbjct: 131 LVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLKEQLITMLQREERWELA 190

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   +    ELDL+ ++  DIF H
Sbjct: 191 QKCMKVIPLFVELDLMYYK--DIFEH 214


>gi|166365344|ref|YP_001657617.1| ribonuclease D [Microcystis aeruginosa NIES-843]
 gi|166087717|dbj|BAG02425.1| probable ribonuclease D [Microcystis aeruginosa NIES-843]
          Length = 209

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 139/209 (66%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+  +  +RY  V++IAVDTET+GL+P RDRLC++QL    G V  IR+  
Sbjct: 3   LDNFQVCDRDLSDDLLSRYLGVNSIAVDTETMGLIPGRDRLCLIQLCDPSGFVTAIRVFR 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  APNL  ++ DE+ EK+FH+ RFD+A L  TFG+  +P+FCTKIAS+L RTYT+ HG
Sbjct: 63  GQTEAPNLKKVMEDERIEKVFHFARFDVAQLSQTFGIATKPIFCTKIASKLARTYTSSHG 122

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  ++EL GI + K  QSSDW +A +L+ +QL YAA+DV +L ++R +    LQR  R 
Sbjct: 123 LKSLVQELEGIELDKTAQSSDWGNAANLTPQQLSYAANDVRYLLSVRDKLIVMLQREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C + +     LDL  ++  DIF H
Sbjct: 183 ELAQKCFSCIPIFTALDLQQYK--DIFEH 209


>gi|300867874|ref|ZP_07112515.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
 gi|300334110|emb|CBN57691.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
          Length = 210

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 135/209 (64%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           MT   V + D+P    + Y+  +AIA DTET+GL+P RDRLC+VQL   +G V ++RIA 
Sbjct: 1   MTDFNVCDRDLPDTLLSHYLTAEAIAADTETMGLLPWRDRLCLVQLCDAEGIVTVVRIAK 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ+ APNL  ++      KIFH+ RFD+A L Y   + V PVFC+KIAS+L RTYT +HG
Sbjct: 61  GQREAPNLKKLMEASNIVKIFHFARFDMATLKYHLDIHVAPVFCSKIASKLARTYTGKHG 120

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD ++EL  + + K  QSSDW +A +LS++QL+YAA+DV +L + R +    LQR  R 
Sbjct: 121 LKDLVQELEQVELDKTAQSSDWGNAANLSEKQLRYAANDVRYLISAREKLITMLQREDRW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C   L     LDLL ++  DIF H
Sbjct: 181 QLAQECFQCLPVIVSLDLLQFK--DIFDH 207


>gi|330813574|ref|YP_004357813.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486669|gb|AEA81074.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 205

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 131/205 (63%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQK 61
            I +++ D+P         ++A+D E+LGL  + RD+LC++QL  GD  V I++      
Sbjct: 2   NITLYQNDLPENHKLTNAQSVAIDAESLGLNYKGRDKLCLLQLCSGDDEVYIVQFDRNNY 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            +PNL  +L D    KI H+ RF++ +L Y    ++  ++CTKIAS+L RTYT++HGL D
Sbjct: 62  KSPNLCKILNDNNILKIAHFARFEMGILKYYLNAKIENIYCTKIASKLGRTYTDKHGLYD 121

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             KELL I ++K+QQSSDW   DLS+EQ QYAA DV++LH L+ +    L+R  R  LA 
Sbjct: 122 ITKELLNITLNKSQQSSDWGLKDLSEEQKQYAALDVLYLHKLKEKLDLMLRREKRDQLAK 181

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
            C +FL  R+ELDL GW+  DIFSH
Sbjct: 182 YCFDFLSTRSELDLNGWDE-DIFSH 205


>gi|113475312|ref|YP_721373.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
 gi|110166360|gb|ABG50900.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
          Length = 207

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/209 (45%), Positives = 142/209 (67%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M+  +V + D+  +  + Y+  D++AVDTET+GL+PRRDRLC+VQL    G V  IRI  
Sbjct: 1   MSDFQVCDRDLTKDILSNYLQADSMAVDTETMGLLPRRDRLCLVQLCDPLGQVTAIRIHK 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ+ APNL  ++      K+FH+ RFD+A+L +  G++V P+FCTKI+S+L RTYT +HG
Sbjct: 61  GQQEAPNLKQLMEANSIVKVFHFARFDVAMLQHYLGIKVSPIFCTKISSKLARTYTGKHG 120

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + EL  + + K+ QSSDW +A++L+++QL YAA+DV +L ++R + ++ L+R  R 
Sbjct: 121 LKDLVMELEKVELDKSSQSSDWGNAENLTEKQLNYAANDVRYLLSVREKLSKILKREERW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C   L     LDLL ++  DIF H
Sbjct: 181 ELAQQCFECLPVFVGLDLLQYK--DIFEH 207


>gi|159030499|emb|CAO91403.1| rnd [Microcystis aeruginosa PCC 7806]
          Length = 209

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 139/209 (66%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+  +  +RY  V++IAVDTET+GL+P RDRLC++QL    G V  IRI  
Sbjct: 3   LDNFQVCDRDLSDDLLSRYLGVNSIAVDTETMGLIPGRDRLCLIQLCDPSGFVTAIRIFR 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  APNL  ++ DE+ EK+FH+ RFD+A L  TFG+  +P+FCTKIAS+L RTYT+ HG
Sbjct: 63  GQTEAPNLKKVMEDERIEKVFHFARFDVAQLSQTFGIATQPIFCTKIASKLARTYTSSHG 122

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  ++EL GI + K  QSSDW +A +L+ +QL YAA+DV +L ++R +    +QR  R 
Sbjct: 123 LKSLVQELEGIELDKTAQSSDWGNAVNLTPKQLSYAANDVRYLLSVRDKLIVMMQREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C + +     LDL  ++  DIF H
Sbjct: 183 ELAQKCFSCIPIFTALDLQQYK--DIFEH 209


>gi|114327365|ref|YP_744522.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
 gi|114315539|gb|ABI61599.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
          Length = 259

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/209 (47%), Positives = 134/209 (64%), Gaps = 7/209 (3%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA---G 59
           TI +H  D+P       +  IA+DTET+GL   RDRLC++Q+S GDG   +++I     G
Sbjct: 53  TIHLHRHDLPPSLDIGPI--IAIDTETMGLNHHRDRLCLIQISAGDGHAHLVQIVPERLG 110

Query: 60  QKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
            K A  PNL  +L +    K+ HY RFD+ +L    G+ +  V CTKIA++L RT+T++H
Sbjct: 111 GKGADCPNLKRLLSNPGCVKLMHYARFDVGILQNALGIAMSNVKCTKIAAKLVRTFTDRH 170

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           GLKD  ++LLG+ ISK QQSSDW A +L+ EQ+ YAASDV++LHAL  +    L R  R 
Sbjct: 171 GLKDLCRDLLGVEISKQQQSSDWGAPELTPEQMAYAASDVLYLHALWNRLEGLLIREDRL 230

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA +C  FL  RA LD LG++  DIFSH
Sbjct: 231 ALAEACFAFLPARARLDYLGYDEPDIFSH 259


>gi|218245974|ref|YP_002371345.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
 gi|218166452|gb|ACK65189.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
          Length = 210

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/209 (47%), Positives = 132/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+  E  +RY+   AIAVDTET+GL+P+RDRLC+VQL    G V  IRI  
Sbjct: 4   LENFQVCDRDLSDETLSRYLAATAIAVDTETMGLIPQRDRLCLVQLCDPSGFVTAIRIER 63

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQK AP L  ++  +   K+FHY RFD+A L Y FG+  +P+FCTKIAS+L RTYT+ HG
Sbjct: 64  GQKEAPKLKQLMEAKTILKVFHYARFDVAQLRYHFGIETQPIFCTKIASKLARTYTSSHG 123

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  ++EL GI + K  QSSDW ++ +LS  QL YAA+DV +L   + +    LQR  R 
Sbjct: 124 LKSLVQELEGIELDKTSQSSDWGNSANLSVAQLSYAANDVRYLIPAKEKLITMLQREERW 183

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C N +     LDL  ++  DIF H
Sbjct: 184 QLAEQCFNCIPVFVSLDLEQYK--DIFEH 210


>gi|189184295|ref|YP_001938080.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda]
 gi|189181066|dbj|BAG40846.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda]
          Length = 210

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 124/191 (64%), Gaps = 7/191 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL--SPGDGTVD-----IIRIAAGQKNAPNLVGMLVDEKR 75
           +A+DTET+GL   RDRLC++Q      D T+D     +++    Q N  NL  +L+D+ R
Sbjct: 20  LAIDTETMGLNLIRDRLCLLQFCQESKDDTIDDKEVFLVKFEDQQYNCRNLKKLLMDDGR 79

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KIFH+ RFD+A + Y  GV +  +FCT +AS+L RTYT+ HGLKD  +ELLGI ISK  
Sbjct: 80  TKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDSHGLKDLCRELLGIQISKQC 139

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           QSSDW    L+ +Q +YAA DVV+LH ++    E L R  R D+A     FL  RAELD+
Sbjct: 140 QSSDWGGQSLTSDQEEYAAKDVVYLHRIKNILEEMLIREQRLDIAQKIFKFLPARAELDV 199

Query: 196 LGWENVDIFSH 206
           +GW+++DI SH
Sbjct: 200 IGWQDIDILSH 210


>gi|17231283|ref|NP_487831.1| ribonuclease D [Nostoc sp. PCC 7120]
 gi|17132925|dbj|BAB75490.1| ribonuclease D [Nostoc sp. PCC 7120]
          Length = 209

 Score =  178 bits (452), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 134/206 (65%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            +V + D+     A+Y+  +AIAVDTET+GL+P+RDRLC++QL   +G V  IRIA GQ 
Sbjct: 6   FQVGDRDLSDATVAQYLQSEAIAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRIAQGQT 65

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L      K+FH+ RFD+A L +   + V+P+FCTKIAS+L RTYTN+HGLKD
Sbjct: 66  AAPNLKKLLEATNVLKVFHFARFDVATLLHHLDIHVQPIFCTKIASKLARTYTNRHGLKD 125

Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL  + + K+ Q SDW +A +L++ QL YAA+DV +L + + +    L+R  R +LA
Sbjct: 126 LVHELEQVELDKSAQGSDWGNAANLTEAQLSYAANDVRYLLSAQQKLVAMLKREERWELA 185

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   L     LDLL ++  D+F H
Sbjct: 186 QQCFQVLPTIVSLDLLQFK--DLFEH 209


>gi|257059023|ref|YP_003136911.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
 gi|256589189|gb|ACV00076.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
          Length = 210

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 132/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+  +  +RY+   AIAVDTET+GL+P+RDRLC+VQL    G V  IRI  
Sbjct: 4   LENFQVCDRDLSDQTLSRYLAATAIAVDTETMGLIPQRDRLCLVQLCDPSGFVTAIRIER 63

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQK AP L  ++  +   K+FHY RFD+A L Y FG+  +P+FCTKIAS+L RTYT+ HG
Sbjct: 64  GQKEAPKLKQLMEAKTILKVFHYARFDVAQLRYHFGIETQPIFCTKIASKLARTYTSSHG 123

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  ++EL GI + K  QSSDW ++ +LS  QL YAA+DV +L   + +    LQR  R 
Sbjct: 124 LKSLVQELEGIELDKTSQSSDWGNSANLSVAQLSYAANDVRYLIPAKEKLITMLQREERW 183

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C N +     LDL  ++  DIF H
Sbjct: 184 QLAEQCFNCIPVFVSLDLEQYK--DIFEH 210


>gi|170078658|ref|YP_001735296.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
 gi|157811866|gb|ABV80286.1| ribonuclease D [Synechococcus sp. PCC 7002]
 gi|169886327|gb|ACB00041.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
          Length = 207

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 129/209 (61%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M    + + D+  E   RY+   AIA+DTET+GL P RDRLC+VQL    G V  IRIA 
Sbjct: 1   MDQFALFDQDLSLEILERYLKSGAIAIDTETMGLNPYRDRLCLVQLCDDAGYVSAIRIAQ 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  APNL  ++   +  K+FH+ RFD+A L + FG+  RP FCTKIAS+L RTYT+ HG
Sbjct: 61  GQTAAPNLKALMEAPEITKVFHFARFDLAQLRHVFGIETRPFFCTKIASKLGRTYTSSHG 120

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  +KEL+G+ + K+ QSSDW +   LS EQL+YA++DV +L  +  + T  LQR  R 
Sbjct: 121 LKALVKELMGVELDKSAQSSDWGNVAVLSAEQLKYASNDVRYLIPMMRKLTAMLQRENRW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            L   C   L     LDL  ++NV  F H
Sbjct: 181 PLMEECLRCLPTFISLDLAFYDNV--FEH 207


>gi|284053636|ref|ZP_06383846.1| 3'-5' exonuclease [Arthrospira platensis str. Paraca]
          Length = 209

 Score =  177 bits (450), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 125/187 (66%), Gaps = 3/187 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+A+DTET+GL+P RDRLC+VQ+    G V  IRI  GQ+ APNL  +L      K+FH
Sbjct: 25  EALAIDTETMGLLPWRDRLCLVQICDPKGQVVAIRIERGQREAPNLKTLLETTNILKVFH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
           + RFD+A L +  G+ V PVFCTKIAS+L RTYT +HGLKD + EL G+ + K+ QSSDW
Sbjct: 85  FARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHGLKDLIMELEGVELDKSSQSSDW 144

Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199
            +A +LS+ QL YAA+DV +L + + +  + L+R  R DLA  C   L     LDL+ ++
Sbjct: 145 GNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREERWDLALDCFQCLPTIVTLDLMQFD 204

Query: 200 NVDIFSH 206
             DIF H
Sbjct: 205 --DIFKH 209


>gi|291571594|dbj|BAI93866.1| ribonuclease D [Arthrospira platensis NIES-39]
          Length = 207

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 125/187 (66%), Gaps = 3/187 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+A+DTET+GL+P RDRLC+VQ+    G V  IRI  GQ+ APNL  +L      K+FH
Sbjct: 23  EALAIDTETMGLLPWRDRLCLVQICDPKGQVVAIRIERGQREAPNLKTLLETTNILKVFH 82

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
           + RFD+A L +  G+ V PVFCTKIAS+L RTYT +HGLKD + EL G+ + K+ QSSDW
Sbjct: 83  FARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHGLKDLIMELEGVELDKSSQSSDW 142

Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199
            +A +LS+ QL YAA+DV +L + + +  + L+R  R DLA  C   L     LDL+ ++
Sbjct: 143 GNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREERWDLALDCFQCLPTIVTLDLMQFD 202

Query: 200 NVDIFSH 206
             DIF H
Sbjct: 203 --DIFKH 207


>gi|75908135|ref|YP_322431.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
 gi|75701860|gb|ABA21536.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
          Length = 209

 Score =  177 bits (449), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 126/187 (67%), Gaps = 3/187 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +AIAVDTET+GL+P+RDRLC++QL   +G V  IRIA GQ  APNL  +L      K+FH
Sbjct: 25  EAIAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRIARGQTAAPNLKKLLEATNVLKVFH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
           + RFD+A L +   + V+P+FCTKIAS+L RTYTN+HGLKD + EL  + + K+ QSSDW
Sbjct: 85  FARFDVATLRHHLDIHVQPIFCTKIASKLARTYTNRHGLKDLVYELEQVELDKSAQSSDW 144

Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199
            +A +L+D QL YAA+DV +L + + +    L+R  R +LA  C   L     LDLL ++
Sbjct: 145 GNAANLTDAQLSYAANDVRYLLSAQQKLVAMLKREERWELAQQCFQVLPTIVSLDLLQFK 204

Query: 200 NVDIFSH 206
             D+F H
Sbjct: 205 --DLFEH 209


>gi|209524209|ref|ZP_03272759.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
 gi|209495300|gb|EDZ95605.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
          Length = 207

 Score =  177 bits (449), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 125/187 (66%), Gaps = 3/187 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+A+DTET+GL+P RDRLC+VQ+    G V  IRI  GQ+ APNL  +L      K+FH
Sbjct: 23  EALAIDTETMGLLPGRDRLCLVQICDPKGQVVAIRIERGQREAPNLKTLLETANILKVFH 82

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
           + RFD+A L +  G+ V PVFCTKIAS+L RTYT +HGLKD + EL G+ + K+ QSSDW
Sbjct: 83  FARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHGLKDLIMELEGVELDKSSQSSDW 142

Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199
            +A +LS+ QL YAA+DV +L + + +  + L+R  R DLA  C   L     LDL+ ++
Sbjct: 143 GNAANLSENQLNYAANDVRYLLSAKDKLIQMLKREERWDLALDCFQCLPTIVTLDLMQFD 202

Query: 200 NVDIFSH 206
             DIF H
Sbjct: 203 --DIFKH 207


>gi|254409855|ref|ZP_05023636.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196183852|gb|EDX78835.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 207

 Score =  177 bits (449), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 133/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M   +V + D+P      Y+  +AIAVDTET+GL+ +RDRLC+VQL      V +IRI  
Sbjct: 1   MAEFQVCDRDLPDALLKTYLNAEAIAVDTETMGLIYQRDRLCLVQLCDPQDRVTVIRIDK 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
            Q  APNL  +L  +   K+FH+ RFD+A+L     + V+PVFCTKIAS+L RTYTN+HG
Sbjct: 61  KQTEAPNLKQLLEAQTVLKVFHFARFDLAILRQNLDIYVQPVFCTKIASKLARTYTNRHG 120

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + +L  + + K+ QSSDW + ++LSDEQL+YAA+DV +L ++R +    LQR  R 
Sbjct: 121 LKDLVMDLEQVELDKSSQSSDWGNPNNLSDEQLRYAANDVRYLLSVRQKLITMLQREERW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C   L     LDLL +   DIF H
Sbjct: 181 QLAQECFEALSVMVSLDLLLYR--DIFEH 207


>gi|158334839|ref|YP_001516011.1| ribonuclease D [Acaryochloris marina MBIC11017]
 gi|158305080|gb|ABW26697.1| ribonuclease D [Acaryochloris marina MBIC11017]
          Length = 209

 Score =  177 bits (448), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 88/187 (47%), Positives = 128/187 (68%), Gaps = 3/187 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D IAVDTET+GL P RDRLC+VQ+   +G V ++RIA GQ +APNL  ++  +   K+FH
Sbjct: 25  DRIAVDTETMGLKPHRDRLCLVQICNPEGQVTVVRIAQGQMDAPNLKQLMESDTVLKVFH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
           + RFDIA L +   +   P+FCTKIAS+L RTY+ +HGLK+ ++EL+G  + K+ QSSDW
Sbjct: 85  FARFDIATLLHHLDIETMPIFCTKIASKLVRTYSPRHGLKELVRELVGEELDKSAQSSDW 144

Query: 141 -SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199
            +A++LS+EQL YA++DV +L + +    + L+R  R +LA +C   L     LDL+ ++
Sbjct: 145 GNAENLSEEQLNYASNDVRYLLSAQATLVKMLEREERLELAMACFQCLPTIVTLDLMHFD 204

Query: 200 NVDIFSH 206
           N  IF H
Sbjct: 205 N--IFEH 209


>gi|148284142|ref|YP_001248232.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
 gi|146739581|emb|CAM79331.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
          Length = 210

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/191 (47%), Positives = 123/191 (64%), Gaps = 7/191 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL-------SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +A+DTET+GL   RDRLC++Q        +  D  V +++    Q N+ NL  +L+D  R
Sbjct: 20  LAIDTETMGLNFARDRLCLLQFCQESKDDNIDDKEVFLVKFEDQQYNSHNLKKLLMDCSR 79

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KIFH+ RFD+A + Y  GV +  +FCT +AS+L RTYT+ HGLKD  +ELLGI ISK  
Sbjct: 80  TKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDSHGLKDLCRELLGIQISKQC 139

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           QSSDW    L+ +Q +YAA DVV+LH ++    E L R  R D+A     FL  RAELD+
Sbjct: 140 QSSDWGRQSLTSDQEEYAAKDVVYLHRIKNILEEMLIREHRLDIAQKIFKFLPARAELDV 199

Query: 196 LGWENVDIFSH 206
           +GW+++DI SH
Sbjct: 200 IGWQDIDILSH 210


>gi|22298627|ref|NP_681874.1| putative ribonuclease D [Thermosynechococcus elongatus BP-1]
 gi|22294807|dbj|BAC08636.1| tlr1083 [Thermosynechococcus elongatus BP-1]
          Length = 211

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 134/209 (64%), Gaps = 14/209 (6%)

Query: 10  DIPAEC---------AARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           D P EC          A +++A  +AVDTET+GL   RDRLC+VQ+   +G V +++I  
Sbjct: 4   DFPLECFDYDLSPTALAHFLNADQLAVDTETMGLNIPRDRLCLVQVCDPEGQVAVVKIGR 63

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQK AP+L  +L   +  KIFHY RFD+A L Y  G+RV PVFCTKIAS++ RTY+ +HG
Sbjct: 64  GQKEAPHLQQLLEHPRITKIFHYARFDLATLRYHLGIRVHPVFCTKIASKIARTYSPRHG 123

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + +LLG+ I K+ QSSDW +A  L ++QL+YAA+DV +L  LR Q T  L+R  R 
Sbjct: 124 LKDLVLDLLGVEIDKSAQSSDWGNATALREDQLRYAANDVRYLIPLRQQLTAMLKREERF 183

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +L  +  + L    +LDL G+  V  F H
Sbjct: 184 ELVQTALSCLPAIVDLDLAGYTQV--FEH 210


>gi|332709748|ref|ZP_08429707.1| ribonuclease D [Lyngbya majuscula 3L]
 gi|332351575|gb|EGJ31156.1| ribonuclease D [Lyngbya majuscula 3L]
          Length = 216

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/209 (45%), Positives = 132/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+P      Y+  D++AVDTET+GL+ +RDRLC+VQL    G V  +RI  
Sbjct: 10  LKDFQVCDRDLPESICQEYLRADSLAVDTETMGLIYQRDRLCLVQLCDPQGRVTFVRIDK 69

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  AP L  +L      K+FH+ RFD+A+L    G+ V PVFCTKIAS+L RTYT+ HG
Sbjct: 70  GQTEAPRLKQLLEATNVLKVFHFARFDVAMLRQNLGIDVNPVFCTKIASKLARTYTSSHG 129

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK+ +KEL  I++ K+ QSSDW +  +LSD+QL+YAA+DV +L  +R +    L+R  R 
Sbjct: 130 LKELVKELERIDLDKSAQSSDWGNVANLSDQQLEYAANDVRYLLNVRQKLINMLEREDRW 189

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C   L     LDLL +   D+F H
Sbjct: 190 ELAQQCFEALPTMVSLDLLHYR--DVFEH 216


>gi|56750860|ref|YP_171561.1| ribonuclease D [Synechococcus elongatus PCC 6301]
 gi|81299489|ref|YP_399697.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
 gi|56685819|dbj|BAD79041.1| probable ribonuclease D [Synechococcus elongatus PCC 6301]
 gi|81168370|gb|ABB56710.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
          Length = 211

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/202 (48%), Positives = 127/202 (62%), Gaps = 5/202 (2%)

Query: 8   EGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           E D+  E  A+Y    AIA+DTE +GL   RDRLC+VQL    G    +RIA GQ  APN
Sbjct: 12  EQDLTDELLAQYRQSPAIAIDTEAMGLNFHRDRLCLVQLCDSAGITTCVRIAQGQTVAPN 71

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +  D +  K+FH+ RFDI  L +  G+ V+P+FCTKIAS+L RTY++QHGLK  L+E
Sbjct: 72  LQALCEDPQITKVFHFARFDITALKHGLGIAVQPIFCTKIASKLARTYSSQHGLKSLLQE 131

Query: 126 LLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           L+G+ + K  QSSDW +A  LS EQ++YA +DV +L A + + T  LQR GR  LA  C 
Sbjct: 132 LVGVELDKTAQSSDWGNAAALSHEQMRYACNDVRYLLAAQAKLTTMLQREGRWQLAQDCF 191

Query: 185 NFLMDRAELDLLGWENVDIFSH 206
             L   A LDL  + +V  F H
Sbjct: 192 ACLPTFAALDLAQFGSV--FEH 211


>gi|33866568|ref|NP_898127.1| putative ribonuclease D [Synechococcus sp. WH 8102]
 gi|33633346|emb|CAE08551.1| putative ribonuclease D [Synechococcus sp. WH 8102]
          Length = 214

 Score =  174 bits (442), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 94/192 (48%), Positives = 124/192 (64%), Gaps = 3/192 (1%)

Query: 6   VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+ A+   RY+   A+AVDTE +GL+  RDRLC+VQ++  D  V  IRI  GQ +A
Sbjct: 13  VFDGDLDADWTERYLRMSALAVDTEAMGLIHGRDRLCLVQIADADDRVCCIRIGLGQTSA 72

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L     EK+FH+ RFD+A L    G+ V P+FCTK+ SRL RTYT +HGLKD +
Sbjct: 73  PNLQRLLEAASVEKVFHFARFDVAALASGLGIAVSPIFCTKVGSRLGRTYTPRHGLKDLV 132

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            EL+G+ + K  QSSDW   D+LSD QL YAA+DV +L   R +    L+R GR DLA  
Sbjct: 133 MELVGVELDKGAQSSDWGRVDELSDVQLAYAANDVRYLLPARQKLEAMLRREGRWDLAQR 192

Query: 183 CCNFLMDRAELD 194
           C   +   A+LD
Sbjct: 193 CFGCIPVIADLD 204


>gi|119487500|ref|ZP_01621110.1| ribonuclease D [Lyngbya sp. PCC 8106]
 gi|119455669|gb|EAW36805.1| ribonuclease D [Lyngbya sp. PCC 8106]
          Length = 208

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/209 (44%), Positives = 134/209 (64%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M+  +V + DI  +  + Y+  D +AVDTET+GL+P RDRLC+VQL    G V  ++IA 
Sbjct: 1   MSNFQVCDRDISEDILSSYLTADRLAVDTETMGLLPWRDRLCLVQLCDPKGQVTAVKIAK 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
            Q  AP+L  +L      K+FH+ RFD+A L Y   + V PVFCTKIAS+L RTYT +HG
Sbjct: 61  DQTEAPHLKKLLEASNTLKVFHFARFDMATLLYYLDIDVNPVFCTKIASKLARTYTGRHG 120

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK+ ++EL  + + K+ QSSDW +  +LS++QL YAA+DV +L  ++ +    L+R  R 
Sbjct: 121 LKELVQELEQVELDKSSQSSDWGNVGNLSEDQLNYAANDVRYLLNVQQKLMVMLEREERL 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           DLA +C + L     LDLL ++  DIF H
Sbjct: 181 DLAQNCFDCLPTIVTLDLLHYK--DIFEH 207


>gi|260436505|ref|ZP_05790475.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
 gi|260414379|gb|EEX07675.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
          Length = 225

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 127/204 (62%), Gaps = 5/204 (2%)

Query: 6   VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V + D+ A    RY+ +  +AVDTE +GL+  RDRLC+VQ++  +  V  +RI  GQ  A
Sbjct: 24  VFDRDLDAAWTERYLQSPRLAVDTEAMGLIHGRDRLCLVQIADAEDRVACVRIGLGQTEA 83

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L     EK+FH+ RFD+A L    G+ V PVFCTK+ SRL RTYT +HGLKD +
Sbjct: 84  PNLKRLLEAPTVEKVFHFARFDVAALAAGLGIEVNPVFCTKVGSRLGRTYTPRHGLKDLV 143

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            EL+G+ + K  QSSDW   D+L+D QL YAA+DV +L   R +  + L+R GR DLA  
Sbjct: 144 MELVGVELDKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEKMLRREGRWDLAQR 203

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C   +   AELD L +    IF H
Sbjct: 204 CFQCVPVVAELDRLRFHQ--IFEH 225


>gi|88807852|ref|ZP_01123363.1| putative ribonuclease D [Synechococcus sp. WH 7805]
 gi|88787891|gb|EAR19047.1| putative ribonuclease D [Synechococcus sp. WH 7805]
          Length = 214

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 127/204 (62%), Gaps = 5/204 (2%)

Query: 6   VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+  E + RY    A+AVDTE +GL+  RDRLC+VQ+      V  IRIA GQ  A
Sbjct: 13  VLDGDLNEEWSERYARSTALAVDTEAMGLIHGRDRLCLVQICDDKDQVACIRIALGQTEA 72

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  ++     EK+FH+ RFD+A L    G+RV P+FCTK+ SRL RTYT +HGLKD +
Sbjct: 73  PRLKALMEATTIEKVFHFARFDVAALATGLGIRVNPLFCTKVGSRLARTYTPRHGLKDLV 132

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            EL+G+ + K  QSSDW   D+L+D QL YAA+D  +L A R Q    L+R GR +LA S
Sbjct: 133 MELVGVELDKQAQSSDWGRVDELTDVQLAYAANDARYLLAARRQLEVMLRREGRWELAQS 192

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C   +   ++LD   +  V+ F H
Sbjct: 193 CFQCIPVMSDLDRFRF--VNTFEH 214


>gi|148238801|ref|YP_001224188.1| ribonuclease D [Synechococcus sp. WH 7803]
 gi|147847340|emb|CAK22891.1| Ribonuclease D [Synechococcus sp. WH 7803]
          Length = 214

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 127/204 (62%), Gaps = 5/204 (2%)

Query: 6   VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+ AE + R+    A+AVDTE +GL+  RDRLC+VQ+      V  IRIA GQ  A
Sbjct: 13  VLDGDLNAEWSERFAASTALAVDTEAMGLIHGRDRLCLVQICDDKDQVACIRIALGQSEA 72

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  ++     EK+FH+ RFD+A L    G+RV P+FCTK+ SRL RTYT +HGLKD +
Sbjct: 73  PRLKALMEAATIEKVFHFARFDVAALATGLGIRVNPIFCTKVGSRLARTYTPRHGLKDLV 132

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            EL+G+ + K  QSSDW   D+L+D QL YAA+D  +L   R Q    L+R GR +LA S
Sbjct: 133 MELVGVELDKQAQSSDWGRVDELTDVQLAYAANDARYLLPARRQLEVMLRREGRWELAQS 192

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C   +   ++LD   +  V+ F H
Sbjct: 193 CFQCIPVMSDLDRFRF--VNTFEH 214


>gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803]
 gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803]
          Length = 217

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 93/209 (44%), Positives = 130/209 (62%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           ++   V + D+P +   + +    +AVDTET+GL P RDRLC+VQ+   +G V  +RIA 
Sbjct: 7   LSQFEVFDYDLPEDVCQQLLACKEVAVDTETMGLNPHRDRLCLVQICDPEGNVTALRIAK 66

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ+ APNL  ++ D    KIFH+ RFD A L +TF ++  P+FCTKIAS++ RTYT+ HG
Sbjct: 67  GQEEAPNLTRLMEDPGITKIFHFARFDTAQLKHTFDIKTYPIFCTKIASKIARTYTSHHG 126

Query: 119 LKDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  ++EL+G+ + K+ Q SDW +A +LS  QL YAA+DV +L  LR +  + L R  R 
Sbjct: 127 LKTLVQELVGVELDKSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKLEKMLAREDRL 186

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C   L     LDL  + NV  F H
Sbjct: 187 RLAQRCFECLPVMVTLDLGMYGNV--FEH 213


>gi|113955257|ref|YP_729699.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311]
 gi|113882608|gb|ABI47566.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311]
          Length = 214

 Score =  171 bits (432), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 123/192 (64%), Gaps = 3/192 (1%)

Query: 6   VHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+ A+ A RY    A+AVDTE +GL+  RDRLC+VQ+   +  V  +RIA GQ  A
Sbjct: 13  VFDGDLDADWAERYSHATALAVDTEAMGLIHGRDRLCLVQICDAEDQVSCVRIALGQTEA 72

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  ++     EK+FH+ RFD+A L    G+RV P+FCTK+ SRL RTY+ +HGLK+ +
Sbjct: 73  PRLKELMERASIEKVFHFARFDVAALATGLGIRVNPIFCTKVGSRLARTYSPRHGLKEVV 132

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            EL+G+ + K  QSSDW   D+LS+ QL YAA+D  +L   R +  E LQR GR +LA  
Sbjct: 133 MELVGVELDKQAQSSDWGRVDELSETQLAYAANDARYLLPARDRLKEMLQREGRWELAER 192

Query: 183 CCNFLMDRAELD 194
           C   +   ++LD
Sbjct: 193 CFECIPVMSDLD 204


>gi|37522692|ref|NP_926069.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
 gi|35213694|dbj|BAC91064.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
          Length = 208

 Score =  171 bits (432), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 131/200 (65%), Gaps = 5/200 (2%)

Query: 10  DIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           D+  E A  Y+ +  +AVD+E +GL+P RDRLC+VQL    G V ++R++AG   A  L 
Sbjct: 11  DLSPEVAGTYLQSGLLAVDSEAMGLLPHRDRLCLVQLCDEAGLVSLVRLSAGLTQASQLQ 70

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L      K+FHY RFD+A+L +  G+RV+P+ CTK+AS+L RTY+ +HGLKD + E +
Sbjct: 71  KVLEAPAVIKLFHYARFDVAMLRHHLGIRVQPIVCTKVASKLARTYSPRHGLKDLVLETV 130

Query: 128 GINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           G+ + K+ QSSDW A  +LS+EQL+YAA+DV +L     +    L+R GR +LA  C   
Sbjct: 131 GVELDKSAQSSDWGAVLELSEEQLRYAANDVRYLIPAWRKLETMLRREGRFELARRCFAH 190

Query: 187 LMDRAELDLLGWENVDIFSH 206
           L  + +LDLLG+ +V  F H
Sbjct: 191 LETQVDLDLLGYSSV--FEH 208


>gi|78211959|ref|YP_380738.1| 3'-5' exonuclease [Synechococcus sp. CC9605]
 gi|78196418|gb|ABB34183.1| 3'-5' exonuclease [Synechococcus sp. CC9605]
          Length = 214

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 125/204 (61%), Gaps = 5/204 (2%)

Query: 6   VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V + D+ A    RY+ +  +AVDTE +GL+  RDRLC+VQ++  +  V  +RI  GQ  A
Sbjct: 13  VFDRDLDAAWTERYLQSPRLAVDTEAMGLIHGRDRLCLVQIADAEDRVACVRIGLGQTEA 72

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +      EK+FH+ RFD+A L     + V PVFCTK+ SRL RTYT +HGLKD +
Sbjct: 73  PNLKRLFEAPTVEKVFHFARFDVAALAAGLSIEVNPVFCTKVGSRLGRTYTPRHGLKDLV 132

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            EL+G+ + K  QSSDW   D+L+D QL YAA+DV +L   R +  + L+R GR DLA  
Sbjct: 133 MELVGVELDKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEQMLRREGRWDLAQR 192

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C   +   AELD L +    IF H
Sbjct: 193 CFQCVPVVAELDRLRFHQ--IFEH 214


>gi|116075800|ref|ZP_01473059.1| putative ribonuclease D [Synechococcus sp. RS9916]
 gi|116067115|gb|EAU72870.1| putative ribonuclease D [Synechococcus sp. RS9916]
          Length = 214

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 93/204 (45%), Positives = 126/204 (61%), Gaps = 5/204 (2%)

Query: 6   VHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+ A  A RY    A+AVDTE +GL+  RDRLC+VQ+   D  V  +RI  GQ  A
Sbjct: 13  VFDGDLDAAWAERYGRAKALAVDTEAMGLIHGRDRLCLVQICDPDDHVACVRIGLGQTEA 72

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  ++  +  EK+FH+ RFD+A L    G+ V P+FCTK+ASRL RTYT +HGLKD +
Sbjct: 73  PRLEALMESKAVEKVFHFARFDVAALASGLGIAVNPIFCTKVASRLARTYTPRHGLKDLV 132

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            EL+G+ + K  QSSDW   D+L++ QL YAA+D  +L   R +    L+R GR +LA  
Sbjct: 133 MELVGVELDKQAQSSDWGRVDELTEAQLAYAANDARYLLPARDRLELMLRREGRWELAER 192

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C   +   A+LD L +  V  F H
Sbjct: 193 CFPCIPVIADLDRLRFNQV--FEH 214


>gi|87124930|ref|ZP_01080777.1| putative ribonuclease D [Synechococcus sp. RS9917]
 gi|86167250|gb|EAQ68510.1| putative ribonuclease D [Synechococcus sp. RS9917]
          Length = 213

 Score =  167 bits (423), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 122/194 (62%), Gaps = 3/194 (1%)

Query: 6   VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+ A  A RY  A  +AVDTE +GL+  RDRLC+VQL  GD  V  +RI  GQ  A
Sbjct: 12  VFDGDLDAAWADRYAKASRLAVDTEAMGLVHGRDRLCLVQLCDGDDNVSCVRIGLGQCEA 71

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  ++     EK+FH+ RFD+A L    G+ V P+FCTK+ASRL RTY+ +HGLK+ +
Sbjct: 72  PRLKALMEAAAVEKVFHFARFDVAALASGLGIAVDPIFCTKVASRLARTYSPKHGLKEVV 131

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            EL+G+ + K  QSSDW   ++LS+ QL YAA+D  +L   R +    L+R GR +LA  
Sbjct: 132 LELVGVELDKQAQSSDWGRVEELSEAQLAYAANDARYLLPARERLEVMLRREGRWELAQR 191

Query: 183 CCNFLMDRAELDLL 196
           C   +   +ELD L
Sbjct: 192 CFRCIPVMSELDRL 205


>gi|116072599|ref|ZP_01469865.1| 3'-5' exonuclease [Synechococcus sp. BL107]
 gi|116064486|gb|EAU70246.1| 3'-5' exonuclease [Synechococcus sp. BL107]
          Length = 214

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 120/192 (62%), Gaps = 3/192 (1%)

Query: 6   VHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+ A    RY+   ++AVDTE +GL+  RDRLC+VQ++     V  +RI  GQ  A
Sbjct: 13  VFDGDLDASWTERYLQMPSLAVDTEAMGLIHGRDRLCLVQIADAQDRVACVRIGLGQSTA 72

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +      EK+FH+ RFD+A L     + V+P+FCTK+ SRL RTYT +HGLKD +
Sbjct: 73  PNLQRLFEAASVEKVFHFARFDVAALAAGLDIAVQPLFCTKVGSRLGRTYTPRHGLKDLV 132

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            EL+G+ + K  QSSDW   D+L+D QL YAA+DV +L   R Q    L+R GR +LA  
Sbjct: 133 MELVGVELDKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNQLETMLRREGRWELAQR 192

Query: 183 CCNFLMDRAELD 194
           C   +   AELD
Sbjct: 193 CFTCIPVIAELD 204


>gi|78185488|ref|YP_377923.1| 3'-5' exonuclease [Synechococcus sp. CC9902]
 gi|78169782|gb|ABB26879.1| 3'-5' exonuclease [Synechococcus sp. CC9902]
          Length = 214

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 120/192 (62%), Gaps = 3/192 (1%)

Query: 6   VHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+ A    RY+    +AVDTE +GL+  RDRLC+VQ++     V  +RIA GQ  A
Sbjct: 13  VFDGDLDASWTERYLQMPCLAVDTEAMGLIHGRDRLCLVQIADAQDRVACVRIALGQSTA 72

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +      EK+FH+ RFD+A L     + V+P+FCTK+ SRL RTYT +HGLKD +
Sbjct: 73  PNLQRLFEAPSVEKVFHFARFDVAALAAGLDIAVQPLFCTKVGSRLGRTYTPRHGLKDLV 132

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            EL+G+ + K  QSSDW   D+L+D QL YAA+DV +L   R +    L+R GR +LA  
Sbjct: 133 MELVGVELDKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNKLETMLRREGRWELAQR 192

Query: 183 CCNFLMDRAELD 194
           C   +   AELD
Sbjct: 193 CFACIPVMAELD 204


>gi|33863970|ref|NP_895530.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313]
 gi|33635554|emb|CAE21878.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313]
          Length = 214

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 128/204 (62%), Gaps = 5/204 (2%)

Query: 6   VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+ ++ A RY+   AIAVDTE +GL+  RDRLC+VQ+      V  +RI  GQ +A
Sbjct: 13  VFDGDLDSDWANRYLRASAIAVDTEAMGLIHGRDRLCLVQICDPADNVACVRIGLGQTSA 72

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  ++     EK+FH+ RFD+A L    G+ V P+FCTK+ASRL RTY+ +HGLK+ +
Sbjct: 73  PRLQKLMEAPSVEKVFHFARFDVAALASGLGIYVLPIFCTKVASRLARTYSPRHGLKEVV 132

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            EL+G+ + K  QSSDW   ++LSD QL YAA+D  +L   R +    L+R GR ++A  
Sbjct: 133 MELVGVELDKQAQSSDWGRVEELSDVQLAYAANDARYLLPARQRLEMMLRREGRWEIAQR 192

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C + +   AELD L +    IF H
Sbjct: 193 CFSCIPVIAELDRLRFTQ--IFEH 214


>gi|123969324|ref|YP_001010182.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601]
 gi|123199434|gb|ABM71075.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601]
          Length = 211

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 118/185 (63%), Gaps = 3/185 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +GL+  RDRLC+VQ+         I+I     ++PNL  +L D+K  KIFHY 
Sbjct: 29  LAIDTEAMGLIHGRDRLCLVQICNEFKRTSCIKIELNTSSSPNLKALLEDDKITKIFHYA 88

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141
           RFD+A L     +  + +FCTKIAS+L RTYTN+HGLKD + ELLGI + K+ QSSDW S
Sbjct: 89  RFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLINELLGIELDKSSQSSDWGS 148

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201
            +DL+ +QL YAA+DV +L    L+    L+R  R +LA  C   +   A+LD+L + N 
Sbjct: 149 NEDLTKDQLDYAANDVRYLIEAMLKLKVILKRENRYELAQKCFETVSVHADLDILKFSN- 207

Query: 202 DIFSH 206
            IF H
Sbjct: 208 -IFEH 211


>gi|78780061|ref|YP_398173.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9312]
 gi|78713560|gb|ABB50737.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9312]
          Length = 211

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 118/185 (63%), Gaps = 3/185 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +GL+  RDRLC+VQ+         I+I   + +APNL  +L DEK  KIFHY 
Sbjct: 29  LAIDTEAMGLIHGRDRLCLVQICNELRRTACIKIELNRSSAPNLKALLEDEKITKIFHYA 88

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141
           RFD+A L    G+  + +FCTKIAS+L RTYTN+HGLKD + ELLG+ + K+ QSSDW S
Sbjct: 89  RFDVAALKCNLGINTKNIFCTKIASKLARTYTNKHGLKDLINELLGVELDKSSQSSDWGS 148

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201
            +DL+ +QL YA++DV +L     +    L R  R +LA  C   +   A+LD+L + N 
Sbjct: 149 KEDLTKDQLDYASNDVRYLIEAMHKLKVILDRENRYELAQKCFKTVSVHADLDILKFSN- 207

Query: 202 DIFSH 206
            IF H
Sbjct: 208 -IFEH 211


>gi|183220183|ref|YP_001838179.1| ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910303|ref|YP_001961858.1| ribonuclease D-like [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167774979|gb|ABZ93280.1| Ribonuclease D-related [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778605|gb|ABZ96903.1| Ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 212

 Score =  164 bits (415), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 6   VHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+  +   A +  D +AVD E +GL PRRDRLC+VQ+S     V +++I  GQK A
Sbjct: 12  VLQGDLNEDFFEAFKKDDRLAVDCEMMGLNPRRDRLCVVQISDSKNKVALVQILPGQKEA 71

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P++  +   ++  KIFH+ R D+  L    G++V+ VFCTKIAS+L RTYT++HGLK+ +
Sbjct: 72  PHIQKLFESKEITKIFHFARMDMTFLRARLGIKVQNVFCTKIASKLARTYTDKHGLKELI 131

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +E    NI K  QSSDW    L+ +Q+ YA++DV  L +L    TE + R  R  +A  C
Sbjct: 132 REFFEENIDKKNQSSDWGKKILTKDQVDYASTDVRFLISLESILTEMMIRENRFTIAEKC 191

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  + ELDLL  E  ++F H
Sbjct: 192 FGFLETQVELDLL--EVYNLFEH 212


>gi|123967004|ref|YP_001012085.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515]
 gi|123201370|gb|ABM72978.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515]
          Length = 213

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 125/206 (60%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           I ++  DI       Y D+  +AVDTE +GL+  RDRLC++Q+S        I+I     
Sbjct: 10  ITLYNNDITQNLYNIYKDSSYLAVDTEAMGLIHGRDRLCLIQISNEFHLTSCIKIELNNS 69

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           ++P++  +  D K  KIFHY RFD+A L     +    +FCTKIAS+L RTYT++HGLK+
Sbjct: 70  DSPHIKKLFEDNKIMKIFHYARFDVAALKCNLNINTNNIFCTKIASKLARTYTHKHGLKE 129

Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL+GI + K+ QSSDW S +DLSD+Q+ YAA+DV +L     +    L+R GR DLA
Sbjct: 130 LIHELIGIELDKSSQSSDWGSCEDLSDKQIDYAANDVKYLIEAMRKLRIILEREGRYDLA 189

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   +   +ELD+L + N  IF H
Sbjct: 190 QKCFQTIPVHSELDILKFSN--IFEH 213


>gi|157414190|ref|YP_001485056.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215]
 gi|157388765|gb|ABV51470.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215]
          Length = 211

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 117/185 (63%), Gaps = 3/185 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +GL+  RDRLC+VQ+    G    I+I     ++ +L  +L DEK  KIFHY 
Sbjct: 29  LAIDTEAMGLIHGRDRLCLVQICNEFGRTSCIKIELNTSSSTHLKALLEDEKITKIFHYA 88

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141
           RFD+A L     +  + +FCTKIAS+L RTYTN+HGLKD + ELLGI + K+ QSSDW S
Sbjct: 89  RFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLINELLGIELDKSSQSSDWGS 148

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201
            +DL+ EQL YAA+DV +L     +    L+R  R +LA  C   +   A+LD+L + N 
Sbjct: 149 NEDLTKEQLDYAANDVRYLIEAMHKLKVILKRENRYELAQKCFETVSVHADLDILKFSN- 207

Query: 202 DIFSH 206
            IF H
Sbjct: 208 -IFEH 211


>gi|91070231|gb|ABE11151.1| putative ribonuclease D [uncultured Prochlorococcus marinus clone
           HF10-11H11]
          Length = 211

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 84/185 (45%), Positives = 117/185 (63%), Gaps = 3/185 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +GL+  RDRLC+VQ+         I+I     ++P+L  +L D+K  KIFHY 
Sbjct: 29  LAIDTEAMGLIHGRDRLCLVQICNEFNRTSCIKIELNTSSSPHLKALLEDDKITKIFHYA 88

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141
           RFD+A L     +  + +FCTKIAS+L RTYTN+HGLKD + ELLGI + K+ QSSDW S
Sbjct: 89  RFDVAALKCNLKINTKNIFCTKIASKLARTYTNKHGLKDLINELLGIELDKSSQSSDWGS 148

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201
            +DL+ +QL YAA+DV +L     +    L+R  R +LA  C   +   A+LD+L + N 
Sbjct: 149 NEDLTKDQLDYAANDVRYLIEAMHKLKVILERENRYELAQKCFETVSVHADLDILKFSN- 207

Query: 202 DIFSH 206
            IF H
Sbjct: 208 -IFEH 211


>gi|254431401|ref|ZP_05045104.1| RNAse D protein [Cyanobium sp. PCC 7001]
 gi|197625854|gb|EDY38413.1| RNAse D protein [Cyanobium sp. PCC 7001]
          Length = 224

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 120/192 (62%), Gaps = 3/192 (1%)

Query: 6   VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+ A  A  Y  A  +AVDTE +GL+  RDRLC+VQ+      V  IR+  GQ +A
Sbjct: 17  VFDGDLDAGWAELYAGARALAVDTEAMGLIHGRDRLCLVQICDDADNVCCIRLRRGQSSA 76

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P+L  ++ +   EK+FH+ RFD+A L    G+ V P+FCTKI SRL RTY+ +HGLKD +
Sbjct: 77  PHLQALMENAAIEKVFHFARFDVAALAENLGIAVHPIFCTKIGSRLARTYSPRHGLKDVV 136

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +EL+G+ + K  QSSDW   DDLS+ QL YAA DV +L   R +    L+R  R +LA  
Sbjct: 137 QELVGVELDKRAQSSDWGEVDDLSEAQLAYAAGDVRYLLQARDRLERMLRREERWELAQR 196

Query: 183 CCNFLMDRAELD 194
           C   L   A+LD
Sbjct: 197 CFTCLPVFADLD 208


>gi|126697114|ref|YP_001092000.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301]
 gi|126544157|gb|ABO18399.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301]
          Length = 211

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 117/185 (63%), Gaps = 3/185 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +GL+  RDRLC+VQ+         I+I     ++P+L  +L DEK  KIFHY 
Sbjct: 29  LAIDTEAMGLIHGRDRLCLVQICNEFKRTSCIKIELNTSSSPHLKKLLEDEKITKIFHYA 88

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141
           RFD+A L     +  + +FCTKIAS+L RTYTN+HGLKD + ELLGI + K+ QSSDW S
Sbjct: 89  RFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLINELLGIELDKSSQSSDWGS 148

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201
            +DL+ +QL YAA+DV +L     +    L+R  R +LA  C   +   A+LD+L + N 
Sbjct: 149 NEDLTKDQLDYAANDVRYLIEAMHKLKVILEREDRYELAQKCFETVSVHADLDILKFSN- 207

Query: 202 DIFSH 206
            IF H
Sbjct: 208 -IFEH 211


>gi|254526817|ref|ZP_05138869.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202]
 gi|221538241|gb|EEE40694.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202]
          Length = 211

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 117/185 (63%), Gaps = 3/185 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +GL+  RDRLC+VQ+    G    I+I     ++ +L  +L D+K  KIFHY 
Sbjct: 29  LAIDTEAMGLIHGRDRLCLVQICNEFGRTSCIKIELNTSSSTHLKALLEDDKITKIFHYA 88

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW-S 141
           RFD+A L     +  + +FCTKIAS+L RTYTN+HGLKD + ELLGI + K+ QSSDW S
Sbjct: 89  RFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGLKDLINELLGIELDKSSQSSDWGS 148

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201
            +DL+ EQL YAA+DV +L     +    L+R  R +LA  C   +   A+LD+L + N 
Sbjct: 149 NEDLTKEQLDYAANDVRYLIEAMHKLKVILKRENRYELAQKCFETVPVHADLDILKFSN- 207

Query: 202 DIFSH 206
            IF H
Sbjct: 208 -IFEH 211


>gi|33862140|ref|NP_893701.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634358|emb|CAE20043.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 213

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/210 (42%), Positives = 125/210 (59%), Gaps = 13/210 (6%)

Query: 4   IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           I     DI  +    Y D+  +AVDTE +GL+  RDRLC++Q+         I+I     
Sbjct: 10  INFSHNDINTDLYNLYKDSSYLAVDTEAMGLIHGRDRLCLIQICNELNLTACIKIELNNS 69

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           ++PN+  +  D+   KIFHY RFD+A L     +  R +FCTKIAS+L RTYTN+HGLKD
Sbjct: 70  DSPNIKKLFEDKNIMKIFHYARFDVAALRCNLEINTRNIFCTKIASKLARTYTNKHGLKD 129

Query: 122 NLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHL----HALRLQFTEKLQRLGR 176
            + ELL + + K+ QSSDW S +DLS++Q+ YAA+DV +L    H L+L     L R GR
Sbjct: 130 LINELLEVELDKSSQSSDWGSLEDLSNKQIDYAANDVRYLIETMHKLKLI----LDREGR 185

Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206
            +LA  C   +   +ELD+L + N  IF H
Sbjct: 186 YELAQKCFKTIPVHSELDILKFSN--IFEH 213


>gi|159904246|ref|YP_001551590.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211]
 gi|159889422|gb|ABX09636.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211]
          Length = 214

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 119/186 (63%), Gaps = 3/186 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           ++A+DTE +GLM  RDRLC+VQ+      V  IRI   QK+AP L  +L +   +KIFH+
Sbjct: 31  SLAIDTEAMGLMHGRDRLCLVQICDESDNVICIRIERNQKSAPLLKNLLENPSIQKIFHF 90

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            RFD+A L     ++V P+FCTK+AS++ RTY+ +HGLK+ + EL+ + + K  QSSDW 
Sbjct: 91  ARFDVAALEVNLDIKVTPIFCTKVASKIGRTYSPRHGLKEVVMELVNVELDKQAQSSDWG 150

Query: 142 A-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200
           A +DLS +QL YAA+DV +L   + +    L+R GR +L T C   +   +ELD+  + N
Sbjct: 151 AVEDLSAKQLAYAANDVRYLIKAKEKLEHMLKREGRWELTTKCFQCIPVMSELDIYRFGN 210

Query: 201 VDIFSH 206
             IF H
Sbjct: 211 --IFEH 214


>gi|297182779|gb|ADI18933.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0010_09O16]
          Length = 203

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 127/205 (61%), Gaps = 4/205 (1%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T I +H+GD+P       +  +AVD E LGL  RRDRLC++Q+S G+    I+++     
Sbjct: 3   TKIELHKGDLPENLDLGTI--VAVDGEFLGLNVRRDRLCLIQVSSGNSDAHIVQLDRENY 60

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           NAPNLV +L D+  +K+FHY R D+  + Y     V  + C+KI S+L RT+++ H LK 
Sbjct: 61  NAPNLVKILADKNIKKLFHYARSDLTHIKYYLKTDVNNIECSKIKSKLARTFSDSHSLKT 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            +KE   +++SK  Q+SD+   +LS  QL+Y A+DV++LH +  +  + L+R  R DL  
Sbjct: 121 LIKEFANVDVSKQFQTSDFGG-ELSQGQLKYCANDVIYLHKIHSELDKILEREKRMDLYR 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
            C  FL  R +LDLL +++ DI+SH
Sbjct: 180 ECIKFLHTRIKLDLLEFKD-DIWSH 203


>gi|318042597|ref|ZP_07974553.1| ribonuclease [Synechococcus sp. CB0101]
          Length = 234

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 111/174 (63%), Gaps = 1/174 (0%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A+AVDTE +GL+  RDRLC+VQ+S     V  IRI  GQ  AP L  ++      K+FH+
Sbjct: 49  ALAVDTEAMGLVHGRDRLCLVQISDDQDNVCCIRILRGQSEAPLLKQLMEHSGIVKVFHF 108

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            RFD+A L    G+ V P+FCTK+ASRL RTYTN+HGLK+ + EL G+ + K  QSSDW 
Sbjct: 109 ARFDVAALGEGLGIAVNPLFCTKVASRLARTYTNRHGLKELVSELCGVELDKGAQSSDWG 168

Query: 142 -ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
             ++LS+ QL YAA+DV +L   R + T+ L+R  R DLA      +   AELD
Sbjct: 169 RVEELSETQLAYAANDVRYLLPARERLTQMLEREERLDLAQRSFQCIPVIAELD 222


>gi|148243178|ref|YP_001228335.1| ribonuclease [Synechococcus sp. RCC307]
 gi|147851488|emb|CAK28982.1| Ribonuclease [Synechococcus sp. RCC307]
          Length = 217

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 90/208 (43%), Positives = 122/208 (58%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           T   V +GD+  E    Y    A+AVDTE +GL+  RDRLC+VQ+      V  IRIA G
Sbjct: 10  THFAVFDGDLSPEWFGHYKNAKALAVDTEAMGLIHGRDRLCLVQICDDQDRVCCIRIARG 69

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q  AP L  ++     EK+FHY RFD+A +    G+ V P+FCTK+ASRL RTY+ +HGL
Sbjct: 70  QSEAPLLKELMEATGIEKVFHYARFDVAAMASGLGIAVNPIFCTKVASRLARTYSPRHGL 129

Query: 120 KDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
              + EL+G+++ K  QSSDW   ++LS++QL YAA+DV +L   R +  + L R  R  
Sbjct: 130 AAVVSELVGVDLDKQAQSSDWGRVEELSEQQLAYAANDVRYLLPARDRLEQMLVREERWS 189

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C  FL      DL  ++   IF H
Sbjct: 190 LAQRC--FLCIPVFSDLDRFQYGSIFEH 215


>gi|87300944|ref|ZP_01083786.1| putative ribonuclease D [Synechococcus sp. WH 5701]
 gi|87284815|gb|EAQ76767.1| putative ribonuclease D [Synechococcus sp. WH 5701]
          Length = 228

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/205 (45%), Positives = 128/205 (62%), Gaps = 5/205 (2%)

Query: 6   VHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V EGD+ AE  +      A+AVDTE +GL+  RDRLC+VQ++     V  IRIA GQ+ A
Sbjct: 22  VFEGDLDAEWLSLLAQAPALAVDTEAMGLVHGRDRLCLVQIADHLDNVCCIRIARGQQEA 81

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  ++     EK+FH+ RFD+A L    G+ V P+FCTK+ASRL RTY+++HGLK+ +
Sbjct: 82  PRLRELMESPAIEKVFHFARFDLAALGEGLGIAVAPLFCTKVASRLARTYSSRHGLKEVV 141

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +EL+G+ + K  QSSDW   ++L + QL YAA+DV +L A R      L+R  R DLA  
Sbjct: 142 QELVGVELDKQSQSSDWGRVEELGEAQLVYAANDVRYLLAARHALAAILEREERLDLARR 201

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C   L   AELD   + +V  F HS
Sbjct: 202 CFACLPVFAELDRSRFGSV--FEHS 224


>gi|317968782|ref|ZP_07970172.1| ribonuclease [Synechococcus sp. CB0205]
          Length = 225

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 104/163 (63%), Gaps = 1/163 (0%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A+AVDTE +GL+  RDRLC+VQ+S     V  IRI  GQ  AP L  ++     EK+FH+
Sbjct: 40  ALAVDTEAMGLIHGRDRLCLVQISDDHDNVCCIRIHRGQTEAPLLKELMEAAGIEKVFHF 99

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            RFD+A L     + V P+FCTKI SRL RTYTN+HGLKD + EL  + + K  QSSDW 
Sbjct: 100 ARFDVAALAEGLDIHVSPIFCTKIGSRLARTYTNRHGLKDLVNELCHVELDKGAQSSDWG 159

Query: 142 -ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             ++LS+ QL YAA+DV +L A R +  E L R  R DLA  C
Sbjct: 160 RVEELSESQLAYAANDVRYLLAARTRLIEMLVREERLDLAQRC 202


>gi|124023956|ref|YP_001018263.1| ribonuclease D [Prochlorococcus marinus str. MIT 9303]
 gi|123964242|gb|ABM78998.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9303]
          Length = 212

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 112/173 (64%), Gaps = 3/173 (1%)

Query: 6   VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V +GD+ ++ A RY+   AIAVDTE +GL+  RDRLC+VQ+      V  +RI  GQ +A
Sbjct: 13  VFDGDLDSDWANRYLRASAIAVDTEAMGLIHGRDRLCLVQICDPADNVACVRIGLGQTSA 72

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  ++     EK+FH+ RFD+A L    G+ V P+FCTK+ASRL RTY+ +HGLK+ +
Sbjct: 73  PRLQKLMEATSVEKVFHFARFDVAALASGLGISVLPIFCTKVASRLARTYSPRHGLKEVV 132

Query: 124 KELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            EL+G+ + K  QSSDW   ++LSD QL YAA+D  +L   R +    L+R G
Sbjct: 133 MELVGVELDKQAQSSDWGRVEELSDVQLAYAANDARYLLPARQRLEMMLRREG 185


>gi|124026737|ref|YP_001015852.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A]
 gi|123961805|gb|ABM76588.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A]
          Length = 214

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 125/208 (60%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           +T  + + DI +E   A R   A+AVDTE +GL+  RDRLC++Q+      V  IRI   
Sbjct: 9   STFNIFDQDIDSETEIALRSSSALAVDTEAMGLIHGRDRLCLIQICDEFDNVICIRIERN 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q +AP+L  +L ++  EK+FH+ RFD+A L     + V P+FCTKIAS++ RTY+ +HGL
Sbjct: 69  QHSAPHLKSILENKTIEKVFHFARFDVAALASNLNINVNPIFCTKIASKIGRTYSPRHGL 128

Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K+ + E +G+ + K  QSSDW    DL+ +QL YAA+DV +L   + +  E L+R  R  
Sbjct: 129 KEVVLETVGVELDKQAQSSDWGKVGDLTQKQLIYAANDVRYLLGAKHKLEEMLKREERWG 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   +ELD   + N  IF H
Sbjct: 189 LAQKCFQCVPVLSELDRRRFTN--IFDH 214


>gi|72382995|ref|YP_292350.1| putative ribonuclease D [Prochlorococcus marinus str. NATL2A]
 gi|72002845|gb|AAZ58647.1| 3'-5' exonuclease [Prochlorococcus marinus str. NATL2A]
          Length = 214

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 125/208 (60%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           +T  + + DI +E   A R   A+AVDTE +GL+  RDRLC++Q+      V  IRI   
Sbjct: 9   STFNIFDQDIDSETEIALRSSSALAVDTEAMGLIHGRDRLCLIQICDEFDNVICIRIERN 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q +AP+L  +L ++  EK+FH+ RFD+A L     + V P+FCTKIAS++ RTY+ +HGL
Sbjct: 69  QHSAPHLKSILENKTIEKVFHFARFDVAALASNLNINVNPIFCTKIASKIGRTYSPRHGL 128

Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K+ + E +G+ + K  QSSDW    DL+ +QL YA++DV +L   + +  E L+R  R  
Sbjct: 129 KEVVLETVGVELDKQAQSSDWGKVGDLTQKQLIYASNDVRYLLGAKHKLEEMLKREERWG 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   +ELD   + N  IF H
Sbjct: 189 LAQKCFQCVPVLSELDRRRFTN--IFDH 214


>gi|116327594|ref|YP_797314.1| ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331795|ref|YP_801513.1| ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120338|gb|ABJ78381.1| Ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125484|gb|ABJ76755.1| Ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 212

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 109/186 (58%), Gaps = 2/186 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D +AVD E +GL PRRDRLC+VQ+      V +++I   QK AP L  +  + +  KIFH
Sbjct: 29  DRLAVDCEMMGLNPRRDRLCVVQICDSSNNVSLVQILPDQKEAPLLKSLFENPEIVKIFH 88

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
           + R D   L Y  G+ +  VFCTKIAS+L RTYT++HGLKD +KE     I K  QSSDW
Sbjct: 89  FARMDSLFLRYRLGISLENVFCTKIASKLARTYTDKHGLKDLIKEFYDEVIDKKNQSSDW 148

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200
               L+ +Q++YA+ DV +L +L  + TE L R GR  LA      L    ++D L  E 
Sbjct: 149 GKKILTKDQIEYASGDVKYLISLEQKLTEILVREGRDSLAREAFRCLPVFNQIDWL--EM 206

Query: 201 VDIFSH 206
             +F H
Sbjct: 207 PSLFEH 212


>gi|24215616|ref|NP_713097.1| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45657025|ref|YP_001111.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24196771|gb|AAN50115.1|AE011455_9 ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45600262|gb|AAS69748.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 212

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 110/186 (59%), Gaps = 2/186 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D +AVD E +GL PRRDRLC+VQ+      V +++I   QK AP L  +  + +  KIFH
Sbjct: 29  DRLAVDCEMMGLNPRRDRLCVVQICDSSNNVSLVQILPDQKEAPLLKSLFENPEIVKIFH 88

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
           + R D   L Y  G+ ++ VFCTKIAS+L RTYT++HGLKD +KE     I K  QSSDW
Sbjct: 89  FARMDSLFLRYRLGINLQNVFCTKIASKLARTYTDKHGLKDLIKEFYDEVIDKKNQSSDW 148

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200
               L+ +Q++YA+ DV +L +L  + TE L R GR  LA      L    ++D L  E 
Sbjct: 149 GKKILTKDQIEYASGDVKYLISLEQKLTEILVREGRDSLAREAFRCLPVFNQIDWL--EM 206

Query: 201 VDIFSH 206
             +F H
Sbjct: 207 PTLFEH 212


>gi|91762366|ref|ZP_01264331.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718168|gb|EAS84818.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002]
          Length = 203

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I++H  D+P +     +  IAVD E +GL  +RD LC++Q+S G+    II++   + +A
Sbjct: 5   IKLHTSDLPEDLDLGNI--IAVDGEFMGLNVKRDPLCLIQISTGNSDAHIIQLDREKYDA 62

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L DE   KIFHYGR D+A + +        +  TKIAS+L R+Y++ H LK  +
Sbjct: 63  PNLNKVLSDESITKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTLI 122

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           KE + +++SK  QSSD+   +LS  QL+Y A+DV++LH +  +  + L R  R DL  SC
Sbjct: 123 KEFMNVDVSKQFQSSDFGG-ELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKSC 181

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R +LDL  +++ DI+SH
Sbjct: 182 LAFLKTRVDLDLALFKD-DIWSH 203


>gi|254456084|ref|ZP_05069513.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083086|gb|EDZ60512.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211]
          Length = 203

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/205 (40%), Positives = 123/205 (60%), Gaps = 4/205 (1%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             I++H+ D+P +     V  +AVD E +GL  RRD LC++QLS G+    I+++     
Sbjct: 3   NNIKLHQKDLPEDLDLGNV--LAVDGEFMGLNVRRDPLCLIQLSTGNSDAHIVQLDRKSY 60

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL+ +L DE   KIFHYGR D+A + Y        +  TKIAS+L R+Y++ H LK 
Sbjct: 61  EAPNLIKILKDETITKIFHYGRADMAHIKYYLKTETNNILDTKIASKLARSYSDNHSLKT 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            +KE   ++ISK  QSSD+    L+  QL+Y A+DV++LH +  +  + L+R  R  L  
Sbjct: 121 LIKEFANVDISKQFQSSDFGG-TLTPAQLKYCANDVIYLHQIHDELFKILERENRIKLYK 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
            C +FL  R +LDL  +++ DI+SH
Sbjct: 180 DCLSFLKTRVDLDLALFKD-DIWSH 203


>gi|262276742|ref|ZP_06054535.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114]
 gi|262223845|gb|EEY74304.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114]
          Length = 206

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 124/208 (59%), Gaps = 4/208 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M   + +  DI  + + +   +IA+D E  GL P  D+L ++QL  G   V +++   G+
Sbjct: 1   MKNYKFYLSDIDGDTSLKNASSIAIDGEFSGLNPLTDKLHLLQLCDGSDFVHLVKFE-GK 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            NAPNL  +L + K +KIFH+GR D+A L     + V  +F TKI S+++R ++  HGLK
Sbjct: 60  YNAPNLKEILENNKIKKIFHFGRADLAFLKQHLDIHVTNIFDTKIGSKISRKFSPHHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSA--DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           D  ++L+ IN+SK  Q+SDW    ++ S++Q+ YA  DV++LH ++ +  + L+R  + +
Sbjct: 120 DLCRDLININLSKEYQTSDWGKKIEEYSEDQILYACKDVLYLHKIKNELEKILKRENKLE 179

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C  FL  R  LDL+G    DIF H
Sbjct: 180 LAEQCFKFLETRTALDLVGLTG-DIFEH 206


>gi|262276702|ref|ZP_06054497.1| ribonuclease D [alpha proteobacterium HIMB114]
 gi|262225133|gb|EEY75590.1| ribonuclease D [alpha proteobacterium HIMB114]
          Length = 204

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 120/198 (60%), Gaps = 3/198 (1%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+  + + +   +IA+D E  GL P  D+L ++Q+  G   V  ++   G+ +AP L  
Sbjct: 10  NDLEDDSSLKNASSIAIDGEFSGLNPLTDKLHLLQICDGSNFVHFVKFD-GEYDAPKLKK 68

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L +   +KIFH+GR D+  +     + V+ ++ TKIAS++ R +T+ HGLKD  ++L+ 
Sbjct: 69  VLENNSIKKIFHFGRADLGFIKKHLNINVKNIYDTKIASKICRKFTSSHGLKDLSRDLIN 128

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           IN+SK  Q+SDW   + SD+Q++YAA+DV+HLH ++ +  + L R  + +LA  C  FL 
Sbjct: 129 INLSKEHQTSDWGKKEYSDDQIKYAANDVLHLHKIKEELDKILIRENKVELAEKCFQFLE 188

Query: 189 DRAELDLLGWENVDIFSH 206
            R +LDL G    DIF H
Sbjct: 189 TRTDLDLCGLG--DIFEH 204


>gi|71083204|ref|YP_265923.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062317|gb|AAZ21320.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062]
          Length = 203

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I++H+ D+P +     +  IAVD E +GL  +RD LC++Q+S G+    II++   + +A
Sbjct: 5   IKLHKNDLPEDLDLGNI--IAVDGEFMGLNVKRDPLCLIQISTGNSDAHIIQLDREKYDA 62

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D    KIFHYGR D+A + +        +  TKIAS+L R+Y++ H LK  +
Sbjct: 63  PNLNKVLSDASIIKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTLI 122

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           KE + +++SK  QSSD+   +LS  QL+Y A+DV++LH +  +  + L R  R DL  SC
Sbjct: 123 KEFMNVDVSKQFQSSDFGG-ELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKSC 181

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R +LDL  +++ DI+SH
Sbjct: 182 LAFLKTRVDLDLALFKD-DIWSH 203


>gi|225629620|ref|ZP_03787627.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591525|gb|EEH12558.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 135

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 90/130 (69%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+   ELL   ++K QQ
Sbjct: 4   KIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLELLDTKLNKQQQ 63

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
           SSDW  ++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C  FL  R ELDL+
Sbjct: 64  SSDWGDENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKCFEFLPTRIELDLM 123

Query: 197 GWENVDIFSH 206
           GWENVDIF+H
Sbjct: 124 GWENVDIFNH 133


>gi|33241189|ref|NP_876131.1| putative ribonuclease D [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238719|gb|AAQ00784.1| Ribonuclease D [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 214

 Score =  144 bits (363), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 120/207 (57%), Gaps = 5/207 (2%)

Query: 3   TIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           + +V E D+  +    +     +A+DTE +GL+  RDRLC+VQ+      V  I+I   Q
Sbjct: 10  SFKVFETDLDDQWTQHFSTQSCLAIDTEAMGLIHGRDRLCLVQICDEQDNVACIKIQQHQ 69

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A NL  ++ D   EK+FHY RFD+A +     + V  +FCTK+AS++ RTY+ +HGLK
Sbjct: 70  TKANNLQSLMEDSAIEKVFHYARFDVAAISCNLNIAVNSIFCTKLASKIGRTYSPRHGLK 129

Query: 121 DNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           + + EL+GI + K  QSSDW    +L+++QL+YA +DV +L   R Q  + L R  R +L
Sbjct: 130 EVILELVGIELDKQAQSSDWGRVGELTEKQLEYATNDVRYLIQARNQLEKMLIREDRWEL 189

Query: 180 ATSCCNFLMDRAELDLLGWENVDIFSH 206
              C   +   +ELD+  + N  IF H
Sbjct: 190 TKRCFECISVMSELDIRRFHN--IFEH 214


>gi|297183461|gb|ADI19592.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0770_37D02]
          Length = 214

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 6/211 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVD--AIAVDTETLGL-MPRRDRLCIVQLSPGDGTVDIIRIA 57
           MT I   + DI AE      +  ++A+DTE  GL +P RD+L +VQ S G+    II+  
Sbjct: 5   MTKIYKFQDDIAAEALKELENHSSLAIDTEGSGLQIPHRDKLSLVQFSTGNNDAYIIQPN 64

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                APN+  +L ++K  KI HY R+DI+ L Y     V+ +F TK+AS+L RTY+  H
Sbjct: 65  RKDYKAPNIKKILENDKITKIGHYLRYDISGLEYFLKCNVKNIFDTKLASKLCRTYSQNH 124

Query: 118 GLKDNLKELLGINISKAQQSSDWSA--DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           GLKD   E  G  + K   SSDW+   D+L+D QLQY ++DV++LH ++ +  + L R  
Sbjct: 125 GLKDLALEFCGKKLDKRLGSSDWNKNLDELTDAQLQYCSNDVIYLHKIKDELYKMLVREN 184

Query: 176 RSDLATSCCNFLMDRAELDLLGWENVDIFSH 206
           R +L  +C  FL  R +LD  G+   DIF H
Sbjct: 185 RLELYENCIKFLKTRIKLDQSGFAE-DIFQH 214


>gi|167041251|gb|ABZ06007.1| putative 3'-5' exonuclease [uncultured marine microorganism
           HF4000_005D21]
 gi|167045755|gb|ABZ10401.1| putative 3'-5' exonuclease [uncultured marine bacterium
           HF4000_APKG3108]
          Length = 214

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 118/211 (55%), Gaps = 6/211 (2%)

Query: 1   MTTIRVHEGDIPAECAARYV--DAIAVDTETLGL-MPRRDRLCIVQLSPGDGTVDIIRIA 57
           MT I   + DI  +         ++A+DTE  GL +P RD+L +VQ S G+    I++  
Sbjct: 5   MTKIYKFQDDISTDALKELEKHSSLAIDTEGSGLQIPHRDKLSLVQFSAGNNDAYIVQPN 64

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                APN+V +L + K  KI HY R+D++ L Y     V+ +F TKIAS+L RTY+  H
Sbjct: 65  RKSYKAPNIVKILENAKITKIGHYLRYDVSGLEYFLKCNVKNIFDTKIASKLCRTYSQNH 124

Query: 118 GLKDNLKELLGINISKAQQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           GLKD   E     + K   SSDW+ +  +L+D QLQY ++DV++LH ++    + L R  
Sbjct: 125 GLKDLALEFCSKKLDKRLGSSDWNKNLYELTDAQLQYCSNDVIYLHKIKDALYKMLVREN 184

Query: 176 RSDLATSCCNFLMDRAELDLLGWENVDIFSH 206
           R +L  SC  FL  R +LD  G+   DIF H
Sbjct: 185 RLELYESCIQFLKTRIKLDQSGFAE-DIFQH 214


>gi|15895183|ref|NP_348532.1| ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|15024889|gb|AAK79872.1|AE007698_6 Ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|325509325|gb|ADZ20961.1| Ribonuclease D [Clostridium acetobutylicum EA 2018]
          Length = 205

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 100/183 (54%), Gaps = 4/183 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IA+DTET GL P +D+LC++Q+   +    I  I     N  NL+G+L   K  KIFH+ 
Sbjct: 26  IAIDTETTGLDPLKDKLCLIQICAKEK---IFLIKYNNSNQKNLIGILQCSKIIKIFHHA 82

Query: 83  RFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            FD+  L     +  +  V CTKIA++L      ++ LK  L++ L INI K  Q S+WS
Sbjct: 83  NFDLRFLMKNLKIYNINNVVCTKIAAKLLNGIEIENSLKKLLRKYLNINIDKKLQKSNWS 142

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201
           A++L+ EQ+QYA  DV++L  L      +L +     LA  C  +L   A L   G EN+
Sbjct: 143 AENLTKEQIQYATYDVIYLEKLWRALKAELIKANLYSLAEECFKYLPTNAILHNRGIENI 202

Query: 202 DIF 204
            I+
Sbjct: 203 FIY 205


>gi|319950372|ref|ZP_08024289.1| ribonuclease D-like protein [Dietzia cinnamea P4]
 gi|319435942|gb|EFV91145.1| ribonuclease D-like protein [Dietzia cinnamea P4]
          Length = 210

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 108/203 (53%), Gaps = 7/203 (3%)

Query: 3   TIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           T ++ EGDI A     Y+ A  IAVDTET GL    DRL ++QLS       ++R++AG 
Sbjct: 6   THQILEGDIDAPTFEAYISAGRIAVDTETSGLSWAADRLNLIQLSAQSVGGSLVRLSAGA 65

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--TRTYTNQHG 118
             AP L  +L      KIFH+  FD+  +      + + + CTK AS+L   +    QH 
Sbjct: 66  --APLLKDLLESRDVVKIFHFAPFDLRFITQLGVAQAQNIRCTKTASKLLDPQLDPKQHS 123

Query: 119 LKDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           L+  L   LG+ I+K + ++SDWSA  LSD Q++YA  DV HL  L  +  ++L+     
Sbjct: 124 LRALLLRKLGVEITKGEARTSDWSARSLSDSQIRYALDDVAHLERLHSKLEKELEERSLI 183

Query: 178 DLATSCCNFLMDRAELDLLGWEN 200
           +L    C+++   A L+  G  N
Sbjct: 184 ELYRQICDYIPIDALLETSGVPN 206


>gi|162146523|ref|YP_001600982.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|209543478|ref|YP_002275707.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785098|emb|CAP54642.1| putative Ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531155|gb|ACI51092.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 393

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 4/170 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE-KIFHY 81
           +++DTE +        LC+VQL+  D  V +  +A G   AP  +G+L+D+    K+FH 
Sbjct: 34  VSIDTEFVRERTYWPELCLVQLAGQDEVVVVDTLAPGIDLAP--LGVLLDDPEVVKVFHA 91

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            R D+ +  Y FG     +F T++A+ +   + +Q G  + +  L G +I KA + SDWS
Sbjct: 92  ARQDLEIFLYLFGHLPAALFDTQVAA-MVAGFGDQVGYDNLVASLTGAHIDKAHRFSDWS 150

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           A  LS+ Q+ YAA+DV HL  +     E+L+R GR D   S    L D A
Sbjct: 151 ARPLSEAQIAYAAADVTHLRTVYQLLLERLEREGRLDWVASDLAVLSDPA 200


>gi|296117272|ref|ZP_06835863.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
 gi|295976165|gb|EFG82952.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
          Length = 421

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 2/165 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE +        LC+VQL+  D  V +  +A G   AP L  +L DE   K+FH  
Sbjct: 55  ITIDTEFVRERTYWPELCLVQLASADEVVVVDALAPGMDLAP-LGELLADEGVIKVFHAA 113

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +  + F    +P+F T++A+ +   Y +Q G    +  ++G  I K+ + SDW+A
Sbjct: 114 RQDLEIFLHLFDRLPQPLFDTQVAA-MVAGYGDQVGYDSLVASVVGAQIDKSHRFSDWAA 172

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
             LS  Q++YAA+DV +L  +  +   +L R GR D  T+  + L
Sbjct: 173 RPLSAAQIEYAAADVTYLREVYQRLVAQLDREGRKDWMTAEMDVL 217


>gi|296536446|ref|ZP_06898543.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
 gi|296263225|gb|EFH09753.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
          Length = 394

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +        LC+VQL+  +    I   A G   AP L  +L D K  K+FH  
Sbjct: 34  VTVDTEFMRERTYWPELCVVQLAGAEDVAVIDAQAEGLDLAP-LGELLADPKVTKVFHAA 92

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +    FG   RP+F T+IA+ +   + +Q      ++ L G  I KA + SDW+A
Sbjct: 93  RQDVEICILRFGAPPRPLFDTQIAA-MVAGFGDQASYDSLVRALAGAQIDKAHRFSDWAA 151

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             LS  Q+ YAA+DV HL  +     E+L + GR
Sbjct: 152 RPLSPAQINYAAADVTHLRRVYTALVERLTQEGR 185


>gi|53803525|ref|YP_114794.1| ribonuclease D [Methylococcus capsulatus str. Bath]
 gi|53757286|gb|AAU91577.1| ribonuclease D [Methylococcus capsulatus str. Bath]
          Length = 388

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 8/172 (4%)

Query: 10  DIPAECAA--RYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           D PAE AA  R +     IAVDTE +       + C++Q++ G     I  +A   ++  
Sbjct: 13  DSPAELAAFCRSIGGSPWIAVDTEFMRDKTYYPKFCLLQIANGTQAACIDPLAI--EDLR 70

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            +  +L +    K+FH  R D+ + F+ F     P+F T++A+ L   +  Q G    + 
Sbjct: 71  EVECLLFNRAITKVFHAARQDLEIFFHRFRAVPAPIFDTQLAAPLV-GHPEQVGYASLVS 129

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            +LG+ + K    +DWS   LS  Q +YAA+DV+HL AL  +  E+L+RLGR
Sbjct: 130 AMLGVTVDKEHTRTDWSQRPLSAAQKEYAANDVIHLAALYPRMREQLERLGR 181


>gi|158425285|ref|YP_001526577.1| ribonuclease D [Azorhizobium caulinodans ORS 571]
 gi|158332174|dbj|BAF89659.1| ribonuclease D [Azorhizobium caulinodans ORS 571]
          Length = 383

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 2/167 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE L       +LC++Q++  D  + I  +A G   AP    ++ +EK +K+FH
Sbjct: 21  DFVTVDTEFLRETTFWPKLCVIQVASVDEAIIIDALAEGLDLAP-FFALMGNEKVKKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
            GR DI ++++   +   PVF T++A+ +   Y +       ++ + G  I K+ + +DW
Sbjct: 80  AGRQDIEIVWHLAEIIPHPVFDTQVAA-MVLGYGDSISYDQLVQRITGHAIDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           S   LS  QL YA +DV HL  +  +  E L+  GR+D      N L
Sbjct: 139 SRRPLSQAQLTYAVADVTHLRDVYKKLMEDLESRGRADWMGEEMNIL 185


>gi|261414901|ref|YP_003248584.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371357|gb|ACX74102.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302327506|gb|ADL26707.1| putative ribonuclease D [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 386

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 8/172 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D  AVDTE   +     RLC++Q++ G+    I+    G   AP      +   +  IFH
Sbjct: 27  DMAAVDTEADSMYHYTARLCLIQITIGEHHY-IVDPLCGLDLAPLFKARAM---QTLIFH 82

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKAQQSSD 139
              +D+ +L+ T+G   + +F T +A+++      QH GL D +KE  G  + K  Q +D
Sbjct: 83  GADYDLRLLWQTYGFSPKSIFDTMLAAKIL---GEQHLGLADLVKEYFGDELKKENQRAD 139

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           W+   LS +  +YA  D  +LH L     EKLQ+ GR +  T  CN L++ A
Sbjct: 140 WTIRPLSLDMCEYAIHDTFYLHELCAILAEKLQQAGRMNWLTEQCNTLIEHA 191


>gi|306842001|ref|ZP_07474675.1| ribonuclease D [Brucella sp. BO2]
 gi|306843696|ref|ZP_07476296.1| ribonuclease D [Brucella sp. BO1]
 gi|306276006|gb|EFM57715.1| ribonuclease D [Brucella sp. BO1]
 gi|306287929|gb|EFM59346.1| ribonuclease D [Brucella sp. BO2]
          Length = 385

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  D T  +  +A G   AP    ++ DEK  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEKIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF T++A+ +   + +       ++++ G ++ K+ + +DW
Sbjct: 80  AARQDIEIVFHLGNLIPSPVFDTQVAA-MVCGFGDAISYDQLVQKVTGKHLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LSD+QL YA +DV +L  + L   E+LQ+ GRS+        L  R   DL
Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193


>gi|254718869|ref|ZP_05180680.1| Rnd, ribonuclease D [Brucella sp. 83/13]
 gi|265983854|ref|ZP_06096589.1| ribonuclease D [Brucella sp. 83/13]
 gi|306837628|ref|ZP_07470498.1| ribonuclease D [Brucella sp. NF 2653]
 gi|264662446|gb|EEZ32707.1| ribonuclease D [Brucella sp. 83/13]
 gi|306407277|gb|EFM63486.1| ribonuclease D [Brucella sp. NF 2653]
          Length = 385

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  D T  +  +A G   AP    ++ DEK  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEKIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF T++A+ +   + +       ++++ G ++ K+ + +DW
Sbjct: 80  AARQDIEIVFHLGNLIPSPVFDTQVAA-MVCGFGDAISYDQLVQKVTGKHLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LSD+QL YA +DV +L  + L   E+LQ+ GRS+        L  R   DL
Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193


>gi|254419933|ref|ZP_05033657.1| ribonuclease D [Brevundimonas sp. BAL3]
 gi|196186110|gb|EDX81086.1| ribonuclease D [Brevundimonas sp. BAL3]
          Length = 383

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 7/196 (3%)

Query: 1   MTTIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           MT I  +E    A+  AR   A  I VDTE +       RLC++Q +  D    I  +A 
Sbjct: 1   MTPITTNEAL--ADFCARLATAPFITVDTEFMRETTYWPRLCLIQAASADHAGIIDPMAE 58

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           G    P L  +L D K  K+FH  R D+ + F   G   RP+F T++A+ +   +  Q  
Sbjct: 59  GLDLEPFL-DLLRDPKIIKVFHACRQDVEI-FVRLGAMPRPMFDTQVAA-MAAGFGEQVA 115

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               ++++L + + K  + +DW+   LSD QL YA  DV HL AL  +  ++L++ GR D
Sbjct: 116 YDSLVRQMLRVELDKGSRFTDWARRPLSDSQLVYALGDVTHLAALYPKLRDRLKKEGRLD 175

Query: 179 LATSCCNFLMDRAELD 194
              S    L+D A  D
Sbjct: 176 WVMSEMESLIDPALYD 191


>gi|329850483|ref|ZP_08265328.1| ribonuclease D [Asticcacaulis biprosthecum C19]
 gi|328840798|gb|EGF90369.1| ribonuclease D [Asticcacaulis biprosthecum C19]
          Length = 417

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 5/177 (2%)

Query: 1   MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           MT I  +  D+ A C A +    I VDTE +       +LC++Q +  D    I  +A  
Sbjct: 1   MTPI-TNTNDLIAFCEAIKSAPFITVDTEFMRETTYWPKLCLIQAASEDHAAIIDPLAKS 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P L  +L DEK  K+FH  R D+ + F   G    P+F T++A+ +   Y +Q   
Sbjct: 60  LDLKPFL-DILADEKILKVFHACRQDMEI-FVNLGTMPMPIFDTQVAA-MAAGYGDQVAY 116

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
              +++ L I+I K  + +DWS   LSD+QLQYA  DV HL  L  +  ++L R GR
Sbjct: 117 DSLVRQKLKIDIDKGSRFTDWSRRPLSDQQLQYALGDVTHLAKLYPKLRDRLAREGR 173


>gi|82699633|ref|YP_414207.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|82615734|emb|CAJ10730.1| HRDC domain:3'-5' exonuclease:Ribonuclease D [Brucella melitensis
           biovar Abortus 2308]
          Length = 385

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  D T  +  +A G   AP    ++ DE+  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDELAPGLDLAP-FFRLMADEEIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF T++A+ +   + +       ++++ G ++ K+ + +DW
Sbjct: 80  AARQDIEIVFHLGNLIPSPVFDTQVAA-MVCGFGDAISYDQLVQKVTGKHLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LSD+QL YA +DV +L  + L   E+LQ+ GRS+        L  R   DL
Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193


>gi|256159482|ref|ZP_05457250.1| Rnd, ribonuclease D [Brucella ceti M490/95/1]
 gi|256254768|ref|ZP_05460304.1| Rnd, ribonuclease D [Brucella ceti B1/94]
 gi|261221947|ref|ZP_05936228.1| ribonuclease D [Brucella ceti B1/94]
 gi|265997910|ref|ZP_06110467.1| ribonuclease D [Brucella ceti M490/95/1]
 gi|260920531|gb|EEX87184.1| ribonuclease D [Brucella ceti B1/94]
 gi|262552378|gb|EEZ08368.1| ribonuclease D [Brucella ceti M490/95/1]
          Length = 385

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  D T  +  +A G   AP    ++ DE+  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF T++A+ +   + +       ++++ G ++ K+ + +DW
Sbjct: 80  AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLMQKVTGKHLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LSD+QL YA +DV +L  + L   E+LQ+ GRS+        L  R   DL
Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193


>gi|161618719|ref|YP_001592606.1| ribonuclease D [Brucella canis ATCC 23365]
 gi|260566676|ref|ZP_05837146.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161335530|gb|ABX61835.1| ribonuclease D [Brucella canis ATCC 23365]
 gi|260156194|gb|EEW91274.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 382

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  D T  +  +A G   AP    ++ DE+  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF T++A+ +   + +       ++++ G ++ K+ + +DW
Sbjct: 80  AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTGKHLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LSD+QL YA +DV +L  + L   E+LQ+ GRS+        L  R   DL
Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193


>gi|23501637|ref|NP_697764.1| ribonuclease D [Brucella suis 1330]
 gi|254704076|ref|ZP_05165904.1| ribonuclease D [Brucella suis bv. 3 str. 686]
 gi|261754734|ref|ZP_05998443.1| ribonuclease D [Brucella suis bv. 3 str. 686]
 gi|23347555|gb|AAN29679.1| ribonuclease D [Brucella suis 1330]
 gi|261744487|gb|EEY32413.1| ribonuclease D [Brucella suis bv. 3 str. 686]
          Length = 385

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  D T  +  +A G   AP    ++ DE+  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF T++A+ +   + +       ++++ G ++ K+ + +DW
Sbjct: 80  AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTGKHLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LSD+QL YA +DV +L  + L   E+LQ+ GRS+        L  R   DL
Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193


>gi|288958469|ref|YP_003448810.1| ribonuclease D [Azospirillum sp. B510]
 gi|288910777|dbj|BAI72266.1| ribonuclease D [Azospirillum sp. B510]
          Length = 396

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 2/169 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I VDTE L       +LC+VQ+   DG V I  +A G    P L  ++ D    K+FH  
Sbjct: 23  ITVDTEFLREKTYWPQLCLVQVGGPDGAVAIDPLAEGIDLTP-LFALMSDPSVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + ++  G    P+F T++A+ +   +    G +  + +L G  I K+ + +DWS 
Sbjct: 82  RQDVEIFWHLSGQIPHPLFDTQVAAMVC-GFGESVGYETLVTKLAGARIDKSSRFTDWSH 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             L++ QL YA SDV+HL     +   +L R GRS         L D A
Sbjct: 141 RPLTERQLTYALSDVIHLRPAYEKLKRRLARSGRSHWLEEEMAILTDPA 189


>gi|17987486|ref|NP_540120.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
 gi|225852267|ref|YP_002732500.1| ribonuclease D [Brucella melitensis ATCC 23457]
 gi|256044440|ref|ZP_05447344.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113284|ref|ZP_05454152.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|256264225|ref|ZP_05466757.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
 gi|260563791|ref|ZP_05834277.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990860|ref|ZP_06103417.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994696|ref|ZP_06107253.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|17983183|gb|AAL52384.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
 gi|225640632|gb|ACO00546.1| ribonuclease D [Brucella melitensis ATCC 23457]
 gi|260153807|gb|EEW88899.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|262765809|gb|EEZ11598.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|263001644|gb|EEZ14219.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094471|gb|EEZ18293.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
 gi|326408773|gb|ADZ65838.1| ribonuclease D [Brucella melitensis M28]
 gi|326538491|gb|ADZ86706.1| ribonuclease D [Brucella melitensis M5-90]
          Length = 385

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  D T  +  +A G   AP    ++ DE+  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF T++A+ +   + +       ++++ G ++ K+ + +DW
Sbjct: 80  AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTGKHLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LSD+QL YA +DV +L  + L   E+LQ+ GRS+        L  R   DL
Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEIAVLTARQTYDL 193


>gi|254689015|ref|ZP_05152269.1| Rnd, ribonuclease D [Brucella abortus bv. 6 str. 870]
 gi|260754508|ref|ZP_05866856.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
 gi|260674616|gb|EEX61437.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
          Length = 384

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  D T  +  +A G   AP    ++ DE+  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF T++A+ +   + +       ++++ G ++ K+ + +DW
Sbjct: 80  AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTGKHLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LSD+QL YA +DV +L  + L   E+LQ+ GRS+        L  R   DL
Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193


>gi|62289703|ref|YP_221496.1| RND, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
 gi|148560669|ref|YP_001258731.1| ribonuclease D [Brucella ovis ATCC 25840]
 gi|163843022|ref|YP_001627426.1| ribonuclease D [Brucella suis ATCC 23445]
 gi|189023953|ref|YP_001934721.1| Rnd, ribonuclease D [Brucella abortus S19]
 gi|225627251|ref|ZP_03785288.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|237815192|ref|ZP_04594190.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|254693498|ref|ZP_05155326.1| Rnd, ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|254697150|ref|ZP_05158978.1| Rnd, ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701527|ref|ZP_05163355.1| Rnd, ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|254707023|ref|ZP_05168851.1| Rnd, ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|254709868|ref|ZP_05171679.1| Rnd, ribonuclease D [Brucella pinnipedialis B2/94]
 gi|254713869|ref|ZP_05175680.1| Rnd, ribonuclease D [Brucella ceti M644/93/1]
 gi|254717074|ref|ZP_05178885.1| Rnd, ribonuclease D [Brucella ceti M13/05/1]
 gi|254730046|ref|ZP_05188624.1| Rnd, ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|256031360|ref|ZP_05444974.1| Rnd, ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|256060870|ref|ZP_05451030.1| Rnd, ribonuclease D [Brucella neotomae 5K33]
 gi|256257265|ref|ZP_05462801.1| Rnd, ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|256369183|ref|YP_003106691.1| ribonuclease D [Brucella microti CCM 4915]
 gi|260168494|ref|ZP_05755305.1| ribonuclease D [Brucella sp. F5/99]
 gi|260545541|ref|ZP_05821282.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260757729|ref|ZP_05870077.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|260761554|ref|ZP_05873897.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883537|ref|ZP_05895151.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|261213756|ref|ZP_05928037.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|261218885|ref|ZP_05933166.1| ribonuclease D [Brucella ceti M13/05/1]
 gi|261314491|ref|ZP_05953688.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|261317409|ref|ZP_05956606.1| ribonuclease D [Brucella pinnipedialis B2/94]
 gi|261321616|ref|ZP_05960813.1| ribonuclease D [Brucella ceti M644/93/1]
 gi|261324867|ref|ZP_05964064.1| ribonuclease D [Brucella neotomae 5K33]
 gi|261752075|ref|ZP_05995784.1| ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|261757962|ref|ZP_06001671.1| ribonuclease D [Brucella sp. F5/99]
 gi|265988446|ref|ZP_06101003.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|297248110|ref|ZP_06931828.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
 gi|62195835|gb|AAX74135.1| Rnd, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
 gi|148371926|gb|ABQ61905.1| ribonuclease D [Brucella ovis ATCC 25840]
 gi|163673745|gb|ABY37856.1| ribonuclease D [Brucella suis ATCC 23445]
 gi|189019525|gb|ACD72247.1| Rnd, ribonuclease D [Brucella abortus S19]
 gi|225617256|gb|EEH14301.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|237790029|gb|EEP64239.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|255999343|gb|ACU47742.1| ribonuclease D [Brucella microti CCM 4915]
 gi|260096948|gb|EEW80823.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668047|gb|EEX54987.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|260671986|gb|EEX58807.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|260873065|gb|EEX80134.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|260915363|gb|EEX82224.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|260923974|gb|EEX90542.1| ribonuclease D [Brucella ceti M13/05/1]
 gi|261294306|gb|EEX97802.1| ribonuclease D [Brucella ceti M644/93/1]
 gi|261296632|gb|EEY00129.1| ribonuclease D [Brucella pinnipedialis B2/94]
 gi|261300847|gb|EEY04344.1| ribonuclease D [Brucella neotomae 5K33]
 gi|261303517|gb|EEY07014.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|261737946|gb|EEY25942.1| ribonuclease D [Brucella sp. F5/99]
 gi|261741828|gb|EEY29754.1| ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|264660643|gb|EEZ30904.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|297175279|gb|EFH34626.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
          Length = 385

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  D T  +  +A G   AP    ++ DE+  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF T++A+ +   + +       ++++ G ++ K+ + +DW
Sbjct: 80  AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTGKHLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LSD+QL YA +DV +L  + L   E+LQ+ GRS+        L  R   DL
Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193


>gi|139437245|ref|ZP_01771405.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
           25986]
 gi|133776892|gb|EBA40712.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
           25986]
          Length = 377

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 7/164 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGT-VDIIRIAAGQKNAPNLVGMLVDEK 74
           AR  DAIAVDTE L       RLC+VQ+ +P +   VD + I     +   L  ++ DE 
Sbjct: 16  AREFDAIAVDTEFLRERTFHPRLCLVQIATPAESVAVDPLVI----DDLSPLAELMADES 71

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+FH    D+ V+ +T GV  RP+F T++A+        Q      ++   G+++ K 
Sbjct: 72  VTKVFHACSQDMEVMLHTVGVLPRPIFDTQVAAAFL-GERQQISYGALVQTFCGVSLPKT 130

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +  +DWS   L+D+Q++YA  DV +L     +   +L+ LGR D
Sbjct: 131 ESLTDWSRRPLTDKQIEYAIDDVKYLIVAYTEMMSRLRELGRVD 174


>gi|115525280|ref|YP_782191.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
 gi|115519227|gb|ABJ07211.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
          Length = 392

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 7/194 (3%)

Query: 13  AECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A   AR+     I VDTE L        LC+VQ++  D  V I  +A G    P    ++
Sbjct: 11  AAACARFAKQPVITVDTEFLRETTYYPLLCVVQIASADEAVVIDSLAPGIDLKP-FFELM 69

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            DE   K+FH  R DI ++++  G+   P+F T++A+ +   Y +       ++ + G  
Sbjct: 70  ADEHVLKVFHAARQDIEIVWHRAGILPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHR 128

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             K  + +DWS   L++EQ+ YA SDV HL  +       L++ GRSD  +     L   
Sbjct: 129 PDKTHRFTDWSRRPLTEEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEILTSP 188

Query: 191 AELDL---LGWENV 201
              D      WE +
Sbjct: 189 KTYDFHPERAWERL 202


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 89/188 (47%), Gaps = 10/188 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTET GL P  DRL ++Q+S     V +I  AA   +    +  L++   EKIFH  
Sbjct: 99  LAIDTETTGLDPHSDRLRLIQISAPGIPVLVIDCAAFLPDGFACLKELLNTPSEKIFHNA 158

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKAQQSSDW 140
           RFD+  L    G+   PVF T +A++L R      + GL       LGI + K +Q+  W
Sbjct: 159 RFDLQFLM-GIGIDCFPVFDTMLAAQLLRPCGGPLKAGLAVVADHYLGIKLDKTEQTGSW 217

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQR--LGRSDLATSCCNFLMDRAE-----L 193
            +  L+  QL YAA D   L  L       L R  LGR+      C   + R E     L
Sbjct: 218 DSASLTGSQLAYAALDAWILLKLYDVMNPLLARHGLGRTASIEFACVSAIARTEYDGINL 277

Query: 194 DLLGWENV 201
           DL  W+ +
Sbjct: 278 DLEKWDEL 285


>gi|327194287|gb|EGE61150.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 381

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D I +DTE L        LC++Q++     V +  +A G   AP    ++ D K  K+FH
Sbjct: 19  DFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP-FFELMADTKVLKVFH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F    +   P+F T++A+ +   + +       +  +  ++I K+ + +DW
Sbjct: 78  AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNVHIDKSSRFTDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           S   LSD+QL+YA +DV HL  + L    +L R GR+   T   N L  R   D+
Sbjct: 137 SRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLTEEMNILEARETYDM 191


>gi|190891177|ref|YP_001977719.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|190696456|gb|ACE90541.1| ribonuclease III protein [Rhizobium etli CIAT 652]
          Length = 381

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D I +DTE L        LC++Q++     V +  +A G   AP    ++ D K  K+FH
Sbjct: 19  DFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP-FFELMADTKVLKVFH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F    +   P+F T++A+ +   + +       +  +  ++I K+ + +DW
Sbjct: 78  AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNVHIDKSSRFTDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           S   LSD+QL+YA +DV HL  + L    +L R GR+   T   N L  R   D+
Sbjct: 137 SRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLTEEMNILEARETYDM 191


>gi|329890110|ref|ZP_08268453.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
 gi|328845411|gb|EGF94975.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
          Length = 384

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           I VDTE +       +LC++Q   SP D  + I  +A G    P  + +L DE   K+FH
Sbjct: 23  ITVDTEFMRETTYWPKLCLIQAAASPTDAAI-IDPMAEGLDLEP-FLDILRDESILKVFH 80

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + F   G   RP+F T++A+ +   + +Q   +  ++++L   + K  + +DW
Sbjct: 81  AARQDVEI-FNKLGAMPRPLFDTQVAA-MAAGFGDQVSYEALVRQMLRQELDKGSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
           +   LSD QL YA  DV HL AL  +  ++LQ+ GR D   S    + D A  D
Sbjct: 139 ARRPLSDAQLTYALGDVTHLSALYPKLRDRLQKEGRLDWVMSEMGAVTDPALYD 192


>gi|86749614|ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
 gi|86572642|gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
          Length = 382

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 5/182 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I VDTE L        LC+VQ++  D  V +  +A G    P    ++ +E   K+FH  
Sbjct: 23  ITVDTEFLRETTYYPLLCVVQMASRDEAVVVDTLAPGIDLKP-FFDLMANENVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   P+F T++A+ +   Y +       ++ + G    K  + +DWS 
Sbjct: 82  RQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199
             L+DEQL YA SDV HL  +       L++ GRSD  +     L      D      WE
Sbjct: 141 RPLTDEQLHYAVSDVTHLRDVFAALDADLKQRGRSDWVSEEMEVLTSPKTYDFHPESAWE 200

Query: 200 NV 201
            +
Sbjct: 201 RL 202


>gi|294852115|ref|ZP_06792788.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|294820704|gb|EFG37703.1| ribonuclease D [Brucella sp. NVSL 07-0026]
          Length = 385

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  D T  +  +A G   AP    ++ DE+  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADEEIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF T++A+ +   + +       ++++   ++ K+ + +DW
Sbjct: 80  AARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYDQLVQKVTSKHLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LSD+QL YA +DV +L  + L   E+LQ+ GRS+        L  R   DL
Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWVNEEMAVLTARQTYDL 193


>gi|254454077|ref|ZP_05067514.1| ribonuclease D [Octadecabacter antarcticus 238]
 gi|198268483|gb|EDY92753.1| ribonuclease D [Octadecabacter antarcticus 238]
          Length = 395

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 7/180 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLV 71
           AA+Y   + VDTE L       +LC++QL+     GD  V +  +A G   AP L  +  
Sbjct: 27  AAKY-PYVTVDTEFLRERTYYSKLCLIQLAYMGEGGDDAVLVDPLAEGLDLAP-LYELFK 84

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           DE   K+FH  R D+ + F   G+  +P+F T++A+ +   +  Q G +  ++++   N+
Sbjct: 85  DENVVKVFHAARQDLEIFFVDQGIIPKPLFDTQVAAMVC-GFGEQAGYETLVRKIAKDNV 143

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
            K+ + +DWS   L+D Q  YA +DV HL  +    + +L++ GR          L D A
Sbjct: 144 DKSSRFTDWSRRPLTDAQKTYALADVTHLRVIYENLSAELEKSGRKKWVAEEMAVLNDPA 203


>gi|330991792|ref|ZP_08315742.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
 gi|329761260|gb|EGG77754.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
          Length = 395

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 5/182 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +        LC+VQL+ G+  V +I   A   +  +L G+L D    K+FH  
Sbjct: 34  VTIDTEFVRERTYWPELCLVQLA-GENDVVVIDTTAPGIDLSSLGGLLDDAGVIKVFHAA 92

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +  + F      +F T++A+ +   Y +Q G  + +  LLG+ I K+ + SDWS 
Sbjct: 93  RQDLEIFLHLFDRLPAALFDTQVAA-MVAGYGDQVGYDNLVWSLLGVQIDKSHRFSDWSV 151

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL---DLLGWE 199
             LS  Q+ YAA+DV +L  +  Q   +L++ GR D   +  + L + A      L  WE
Sbjct: 152 RPLSAAQIGYAAADVTYLRQVYGQLLAQLEKEGRLDWVAAELDVLNNPATFRPDPLTLWE 211

Query: 200 NV 201
            +
Sbjct: 212 KM 213


>gi|153009869|ref|YP_001371084.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
 gi|151561757|gb|ABS15255.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
          Length = 385

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  D T  +  +A G   AP    ++ DE   K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGLDLAP-FFRLMADETIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF +++A+ +   + +       ++++ G  I K+ + +DW
Sbjct: 80  AARQDIEIVFHLGDLIPSPVFDSQVAAMVC-GFGDAISYDQLVQKVTGKQIDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LSD+QL YA +DV +L  + L   E+L++ GRS+        L  R   D+
Sbjct: 139 RRRPLSDKQLDYALADVTYLRDIYLYLKEELEKEGRSEWVNEEMAVLTSRETYDM 193


>gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1]
 gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1]
          Length = 392

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 3/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTE +       +LC++Q +       +I   A   +    + +L DE  +K+FH  
Sbjct: 23  VAVDTEFMRETTYWPKLCLIQAAAPSAEA-VIDPLADDIDLSCFLDILRDESIQKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + F   G   +P+F T++A  +   +  Q      ++++L I I K+ + +DW+ 
Sbjct: 82  RQDVEI-FNNLGAMPKPLFDTQVAG-MAAGFGEQIAYDALVRQMLKIEIDKSSRFTDWAR 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             LSD QL YA +DV HL  L     ++L+R GR    T   N L D A  D+
Sbjct: 140 RPLSDSQLTYALADVTHLAKLYPLLRQRLEREGRLAWVTDEMNDLTDPANYDV 192


>gi|239831578|ref|ZP_04679907.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
 gi|239823845|gb|EEQ95413.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
          Length = 385

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++  + T  +  +A G   AP    ++ DEK  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMASPNHTALVDALAPGLDLAP-FFSLMADEKVVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F+   +   PVF +++A+ +   + +       ++++ G +I K+ + +DW
Sbjct: 80  AARQDIEIVFHLGDLIPSPVFDSQVAAMVC-GFGDAISYDQLVQKVTGKHIDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
               LS++QL YA +DV +L  + L   ++L++ GRS+        L  R   DL
Sbjct: 139 RRRPLSEKQLDYALADVTYLRDIYLYLKQELEKEGRSEWVNEEMAVLTSRETYDL 193


>gi|298291118|ref|YP_003693057.1| ribonuclease D [Starkeya novella DSM 506]
 gi|296927629|gb|ADH88438.1| ribonuclease D [Starkeya novella DSM 506]
          Length = 385

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I VDTE L       +LC+VQL+  +  + +  +A G   AP    ++ DEK  K+FH G
Sbjct: 23  ITVDTEFLRETTFWPKLCVVQLASVEEAIVVDAVADGIDLAP-FFALMSDEKVLKVFHAG 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   PVF T++A+ +   + +       ++ + G  + K+ + +DWS 
Sbjct: 82  RQDIEIVWHLAGIIPHPVFDTQVAA-MVLGHGDSISYDQLVQRITGEVLDKSLRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             LS  Q+ YA +DV HL  + L+    L++ GR+D
Sbjct: 141 RPLSAAQIAYAEADVTHLRDVFLKLDADLKKRGRAD 176


>gi|209548705|ref|YP_002280622.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534461|gb|ACI54396.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 381

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D I +DTE L        LC++Q++     V +  +A G   AP    ++ D K  K+FH
Sbjct: 19  DFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDLAP-FFELMADPKVLKVFH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F    +   P+F T++A+ +   + +       +  +  ++I K+ + +DW
Sbjct: 78  AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNVHIDKSSRFTDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           S   LSD+QL+YA +DV HL  + L    +L R GR+   +   + L  R   DL
Sbjct: 137 SRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEMDILEARETYDL 191


>gi|254439069|ref|ZP_05052563.1| ribonuclease D [Octadecabacter antarcticus 307]
 gi|198254515|gb|EDY78829.1| ribonuclease D [Octadecabacter antarcticus 307]
          Length = 395

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 7/180 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDII---RIAAGQKNAPNLVGMLV 71
           AA+Y   + VDTE L       +LC++QL+  GDG  D +    +A G   AP L  +  
Sbjct: 27  AAKY-PYVTVDTEFLRERTYYSKLCLIQLAYMGDGDDDAVLLDPLANGLDLAP-LYDLFK 84

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           DE   K+FH  R D+ + F   G+  +P+F T++A+ +   +  Q G +  ++++   N+
Sbjct: 85  DENVVKVFHAARQDLEIFFVDQGIIPKPLFDTQVAAMVC-GFGEQAGYETLVRKIAKDNV 143

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
            K+ + +DWS   LSD Q  YA +DV HL  +    + +L + GR          L D A
Sbjct: 144 DKSSRFTDWSRRPLSDAQKTYALADVTHLRVIYEYLSAELDKSGRKKWVAEEMAVLNDPA 203


>gi|257063921|ref|YP_003143593.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
 gi|256791574|gb|ACV22244.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
          Length = 392

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +LC++QL+  +  V +  +     +A N+  +  DE   
Sbjct: 15  ARAHKVLAIDTEFMREKTYWPKLCLIQLATPERAVAVDPLRLHDLSALNV--LFQDENIL 72

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH  R D+ ++    G    P+F T+IA+ L   +T Q G    +   LG+++ KA  
Sbjct: 73  KLFHASRQDLEIINIEMGCLPAPIFDTQIAAALL-GHTTQIGYGPLVMNELGVHLKKADS 131

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +DWS   L+  QLQYA  DV++L  L    + KL++L R D   S
Sbjct: 132 YTDWSRRPLTKSQLQYALDDVIYLPKLYDSMSRKLKKLNRMDWLAS 177


>gi|116251369|ref|YP_767207.1| ribonuclease D [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256017|emb|CAK07098.1| putative ribonuclease D [Rhizobium leguminosarum bv. viciae 3841]
          Length = 381

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 3/188 (1%)

Query: 9   GDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP   
Sbjct: 6   ADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDLAP-FF 64

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  + 
Sbjct: 65  ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIK 123

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            ++I K+ + +DWS   LSD+QL YA +DV HL  + L    +L R GRS   +   + L
Sbjct: 124 NVHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLSLKAELDREGRSSWLSEEMDIL 183

Query: 188 MDRAELDL 195
             R   D+
Sbjct: 184 ESRETYDM 191


>gi|269215504|ref|ZP_06159358.1| ribonuclease D [Slackia exigua ATCC 700122]
 gi|269130991|gb|EEZ62066.1| ribonuclease D [Slackia exigua ATCC 700122]
          Length = 399

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEK 74
           AR  D +A+DTE L       +LC++QL   + +V  D +++     +   L  ++VD  
Sbjct: 18  ARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKV----HDLSPLRDLMVDTS 73

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+FH    D+ +LF+   V   P+F T++A+ L    T Q G    +    G+ + KA
Sbjct: 74  VVKVFHAATQDLDILFHELDVMPDPIFDTQVAAALL-GQTVQVGYGTLVLNECGVRLKKA 132

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
              +DW+   LS  Q+ YA  DVV+L  +  Q TE+L+ LGR+
Sbjct: 133 DSFTDWARRPLSSSQINYALEDVVYLPRIYRQLTERLEALGRA 175


>gi|114326875|ref|YP_744031.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
 gi|114315049|gb|ABI61109.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
          Length = 429

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 5/176 (2%)

Query: 3   TIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+     D+ A C   R    + +DTE +        LC+VQL   D    I  +A    
Sbjct: 47  TLITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELD 106

Query: 62  NAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            AP  VG +L D    K+FH  R DI +    FG   +P+F T++A+ +   + +Q G  
Sbjct: 107 LAP--VGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAA-MVAGFGDQVGYD 163

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             +  L G +I KA + SDWS   LS  Q+ YAA+DV HL  +     ++L++ GR
Sbjct: 164 TLVSSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEGR 219


>gi|90423836|ref|YP_532206.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
 gi|90105850|gb|ABD87887.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
          Length = 384

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 5/183 (2%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           AI VDTE L        LC+VQ++  +  V +  +A G    P    ++ ++   K+FH 
Sbjct: 22  AITVDTEFLRETTYYPLLCVVQMASAEDAVVVDTLAPGIDLKP-FFDLMANDDVLKVFHA 80

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            R DI ++++  G+   P+F T++A+ +   Y +       ++ + G    K  + +DW+
Sbjct: 81  ARQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWA 139

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGW 198
              L+DEQL YA SDV HL  +       L++ GRSD  +     L      D      W
Sbjct: 140 RRPLTDEQLHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEVLTSPKTYDFHPERAW 199

Query: 199 ENV 201
           E +
Sbjct: 200 ERL 202


>gi|241203984|ref|YP_002975080.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857874|gb|ACS55541.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 381

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D I +DTE L        LC++Q++     V +  +A G   AP    ++ D K  K+FH
Sbjct: 19  DFITIDTEFLRETTFWPELCLIQMASPRTEVLVDPLAKGIDLAP-FFELMADTKVLKVFH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F    +   P+F T++A+ +   + +       +  +  ++I K+ + +DW
Sbjct: 78  AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNVHIDKSSRFTDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           S   LSD+QL YA +DV HL  + L    +L R GRS   +   + L  R   D+
Sbjct: 137 SRRPLSDKQLDYALADVTHLRDVYLSLKAELDREGRSSWLSEEMDILESRETYDM 191


>gi|218670444|ref|ZP_03520115.1| ribonuclease III protein [Rhizobium etli GR56]
          Length = 212

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 3/188 (1%)

Query: 9   GDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP   
Sbjct: 6   ADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP-FF 64

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  + 
Sbjct: 65  ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIK 123

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            ++I K+ + +DWS   LSD+QL+YA +DV HL  + L    +L R GR+   +   + L
Sbjct: 124 SVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEMDIL 183

Query: 188 MDRAELDL 195
             R   D+
Sbjct: 184 EARETYDM 191


>gi|91977418|ref|YP_570077.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
 gi|91683874|gb|ABE40176.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
          Length = 392

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 5/182 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I VDTE L        LC+VQ++  D  V +  +A G    P    ++ +E   K+FH  
Sbjct: 23  ITVDTEFLRETTYYPLLCVVQMASPDEAVVVDTLAPGIDLKP-FFDLMANENVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   P+F T++A+ +   Y +       ++ + G    K  + +DWS 
Sbjct: 82  RQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199
             L+DEQL YA SDV HL  +       L++  RSD  +     L      D      WE
Sbjct: 141 RPLTDEQLHYAVSDVTHLRDVFAALDADLKKRDRSDWVSEEMEILTSPKTYDFHPESAWE 200

Query: 200 NV 201
            +
Sbjct: 201 RL 202


>gi|163868507|ref|YP_001609716.1| hypothetical protein Btr_1359 [Bartonella tribocorum CIP 105476]
 gi|161018163|emb|CAK01721.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
          Length = 384

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 2/180 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R  D + VDTE +       +LC++QL+  D TV I  IA      P    +++D+K 
Sbjct: 17  ALRNSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAPDIDLQP-FFDLMIDKKI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH  R DI  ++Y  GV   P+F T+IA  +   + +       ++   G ++ K+ 
Sbjct: 76  VKVFHSARQDIETIYYLGGVIPSPLFDTQIAGSIC-GFGDSISYDQIVQHCTGHHLDKSS 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           + +DWS   LS++QL YA +DV +L  + L   ++L++  R+         L++    D+
Sbjct: 135 RFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRTHWMDDEVTILLNPKTYDM 194


>gi|148261351|ref|YP_001235478.1| ribonuclease D [Acidiphilium cryptum JF-5]
 gi|146403032|gb|ABQ31559.1| ribonuclease D [Acidiphilium cryptum JF-5]
          Length = 392

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 77/169 (45%), Gaps = 2/169 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +        LC+VQL   +    I   A G   AP L  +  +    K+FH  
Sbjct: 32  VTVDTEFMREKTYFPELCVVQLGGANDVAVIDAQAEGLDLAP-LGALFANPAVTKVFHAC 90

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI +    FG    P+F T++A+ +   + +Q G    +  L G  I KA + SDWSA
Sbjct: 91  RQDIEIFLLKFGAVPAPLFDTQVAA-MVAGFGDQVGYDTLVSSLAGGRIDKAHRFSDWSA 149

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             LS  Q+ YAA+DV  L  +      +L R GR D        L D A
Sbjct: 150 RPLSRAQIAYAAADVTWLRPVYEGLRARLTREGRLDWVAEEAAVLADPA 198


>gi|256827062|ref|YP_003151021.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
 gi|256583205|gb|ACU94339.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
          Length = 399

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 16  AARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           A R +D+  +A+DTE L       RLC++Q+   D T+ +   A        L  +    
Sbjct: 31  AKRALDSSVLAIDTEFLREKTYYARLCLLQMQTDDETIIVDPFAVSDLGV--LAPLFQSS 88

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              KI H GR D+ +L    G+  +P+F T++A+ L   +T Q G    +  + G+ ++K
Sbjct: 89  SIMKIVHSGRQDLEILNREVGLLPQPLFDTQVAAALL-GHTQQIGYGSLVSAVCGVQLAK 147

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
               +DWS   LS  Q+ YAA DV++L  L    T++L+RLGR
Sbjct: 148 MDSFTDWSRRPLSASQISYAADDVIYLPQLYHTMTDELERLGR 190


>gi|326404838|ref|YP_004284920.1| ribonuclease D [Acidiphilium multivorum AIU301]
 gi|325051700|dbj|BAJ82038.1| ribonuclease D [Acidiphilium multivorum AIU301]
          Length = 392

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 77/169 (45%), Gaps = 2/169 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +        LC+VQL   +    I   A G   AP L  +  +    K+FH  
Sbjct: 32  VTVDTEFMREKTYFPELCVVQLGGANDVAVIDAQAEGLDLAP-LGALFANPAVTKVFHAC 90

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI +    FG    P+F T++A+ +   + +Q G    +  L G  I KA + SDWSA
Sbjct: 91  RQDIEIFLLKFGAVPTPLFDTQVAA-MVAGFGDQVGYDTLVSSLAGGRIDKAHRFSDWSA 149

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             LS  Q+ YAA+DV  L  +      +L R GR D        L D A
Sbjct: 150 RPLSRAQIAYAAADVTWLRPVYEGLRARLTREGRLDWVAEEAAVLADPA 198


>gi|144899165|emb|CAM76029.1| Ribonuclease D [Magnetospirillum gryphiswaldense MSR-1]
          Length = 406

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I VDTE +       +LC+VQL+  D    +  +A G   AP L  ++ +    K+FH  
Sbjct: 30  ITVDTEFMREKTYYPQLCLVQLAGPDEARAVDPLAPGMDLAP-LFELMANPNVLKVFHAA 88

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +  +  G    P+F T++A+ +   + +  G +    +L    I K+Q+ +DW+ 
Sbjct: 89  RQDVEIFLHLSGAVPAPLFDTQVAAMVC-GFGDSVGYETLASQLAKARIDKSQRFTDWAL 147

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L+++Q+QYA +DV HL     +   KL+R GR D
Sbjct: 148 RPLTEKQVQYALADVTHLRVAYEKLVRKLERNGRLD 183


>gi|189426679|ref|YP_001953856.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
 gi|189422938|gb|ACD97336.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
          Length = 381

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 8/168 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+D E   +   R+++C++QLS   GT  VD +R++    +   L  +L       + H
Sbjct: 28  LALDLEADSMHHYREKVCLLQLSNRAGTWLVDPLRLS----DLSPLRVLLARPGLRTVLH 83

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
            G +DI  L   FG+ V+ +F T +A++ T     + GL   L+E  GI + K  Q +DW
Sbjct: 84  GGDYDIRSLHRDFGIVVQQMFDTMVAAQFT--GATEFGLAALLREHFGIELDKRFQKADW 141

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           S   L+ E   YAA D  HL  L  +   +L++LGR +     C  L+
Sbjct: 142 SKRPLTTEMADYAAHDTAHLLELADRLHARLEQLGRREWVAEECALLV 189


>gi|218515424|ref|ZP_03512264.1| ribonuclease III protein [Rhizobium etli 8C-3]
          Length = 177

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 3/174 (1%)

Query: 9   GDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP   
Sbjct: 6   ADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP-FF 64

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  + 
Sbjct: 65  ELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIK 123

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++I K+ + +DWS   LSD+QL+YA +DV HL  + L    +L R GR+   T
Sbjct: 124 NVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLT 177


>gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
 gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
          Length = 382

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 3/160 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVDTE +       +LC++Q +       I   A G    P  + +L D    K+FH  
Sbjct: 23  IAVDTEFMRETTYWPKLCLIQAATPTHEAIIDPQADGLDLTP-FLDILRDPAIVKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D  + F   G   +P+F T++A+ +   + +Q      ++++L I++ K  + +DWS 
Sbjct: 82  RQDTEI-FVKLGAMPKPMFDTQVAA-MAAGFGDQVAYDGLVRQMLKIDLDKGSRFTDWSR 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             LSD QL YA  DV HL AL  +  ++L R GR D  TS
Sbjct: 140 RPLSDAQLTYAIGDVTHLAALYPKLRDRLAREGRLDWVTS 179


>gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1]
 gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1]
          Length = 381

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A +   +A+DTE L       +LC++QL+  D T  +   A        L  +L +E   
Sbjct: 16  AMHSSVLAIDTEFLREKTYYAKLCLIQLATDDETAIVDPFAVDDLKV--LAPVLRNENVM 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH G  D+ +L    GV   P+F T++A+ L   +T Q G    +    G+ + K   
Sbjct: 74  KLFHAGNQDLEILLREVGVLPHPLFDTQVAAALL-GHTQQIGYAALVHAECGVTLKKIDS 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            +DWS   LSD QL+YAA DVV+L  +  +   +L  LGR
Sbjct: 133 FTDWSRRPLSDSQLEYAADDVVYLPRMYERMRAQLVELGR 172


>gi|87199358|ref|YP_496615.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444]
 gi|87135039|gb|ABD25781.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444]
          Length = 405

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 3/159 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIF 79
           D + VDTE +        LC+VQ++       I  +A G   +P L+ +LVD E   K+F
Sbjct: 24  DFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPLAPGLDMSP-LLDLLVDNEDVLKVF 82

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H G  D+ +++   G    P+F T+IA  +  + + Q G  + ++  LG++I K  + +D
Sbjct: 83  HAGGQDVEIIYNLTGKTPHPIFDTQIAM-MAVSQSEQIGYSNLVESWLGLSIDKGARFTD 141

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           WS   L++ Q++YA  DV HL  +  +  ++L + GR +
Sbjct: 142 WSRRPLTERQIEYAIGDVTHLSKIFPKLLKRLIKTGRGE 180


>gi|254466167|ref|ZP_05079578.1| ribonuclease D [Rhodobacterales bacterium Y4I]
 gi|206687075|gb|EDZ47557.1| ribonuclease D [Rhodobacterales bacterium Y4I]
          Length = 385

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 9/192 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI---AAGQKNAPNLVGMLVDEKREKI 78
           + VDTE L       +LC++QL+  G+G  D + +   A G    P L  +  DE   K+
Sbjct: 23  VTVDTEFLRERTYYSKLCLIQLAFSGNGEDDAVLVDPLADGISLEP-LYALFRDENVVKV 81

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH  R D+ + +   GV  +P+F T++A+ +   +  Q G +  +++++   + K  + +
Sbjct: 82  FHAARQDLEIFWVDAGVFPKPLFDTQVAA-MVCGFGEQAGYETLVRKIVKQGLDKTSRFT 140

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL-- 196
           DWS   LS+ Q  YA +DV HL  +      +L++ GRS         L D A  D+   
Sbjct: 141 DWSRRPLSEAQKTYALADVTHLRKIYEFLAAELEKSGRSHWVAEELQVLTDPATYDIQPQ 200

Query: 197 -GWENVDIFSHS 207
             W+ V   ++S
Sbjct: 201 EAWQRVKTRTNS 212


>gi|254448397|ref|ZP_05061858.1| ribonuclease D [gamma proteobacterium HTCC5015]
 gi|198262010|gb|EDY86294.1| ribonuclease D [gamma proteobacterium HTCC5015]
          Length = 384

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 3/156 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE L       +LC++Q++  D    I  +A    +   L  +L DE   K+ H  
Sbjct: 26  LTLDTEFLREKTYYPQLCLIQIANHDLIACIDPLAID--DLTPLYALLHDESIVKVLHAA 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D  +L+ +     +PVF T++A+ L   Y +Q G    ++++ G+ + K+Q  +DWS 
Sbjct: 84  VQDQEILYQSSQQPPKPVFDTQVAASLL-GYGDQMGYAKLVEKICGVQLDKSQSRTDWSR 142

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L+++Q+ YAA DV HL  +      +L+RLGRSD
Sbjct: 143 RPLNEKQIDYAADDVRHLREIYQHLKTELERLGRSD 178


>gi|146340329|ref|YP_001205377.1| ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278]
 gi|146193135|emb|CAL77147.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278]
          Length = 389

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 8/198 (4%)

Query: 9   GDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
            D+ A CA  A++   I VDTE L        LC+VQ++  D  V I  +A G  +    
Sbjct: 15  ADLAAACARLAQH-PVITVDTEFLRETTYYPLLCVVQMASQDEAVVIDALAEGI-DLKAF 72

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             ++ +EK  K+FH  R DI ++++  G+   P+F T++A+ +   Y +       ++ +
Sbjct: 73  FELMANEKVLKVFHAARQDIEIIWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERI 131

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
            G    K  + +DWS   L+ EQ  YA +DV HL  +       L++ GRSD  +     
Sbjct: 132 TGHRPDKTHRFTDWSRRPLTKEQAHYAEADVTHLRDVFAALDTDLKKRGRSDWVSEEMEI 191

Query: 187 LMDRAELDL---LGWENV 201
           L      D      WE +
Sbjct: 192 LTSPKTYDFHPERAWERL 209


>gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
 gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE L        LC+VQ++     V +  +A G    P +  ++ +    K+FH  
Sbjct: 21  ITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDLTP-MFELMANPNVVKVFHAA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   P+F T++A+ +   + +       ++++  + I K+ + +DWS 
Sbjct: 80  RQDIEIIYHLGGLIPHPIFDTQVAA-MVCGFGDSISYDQLVQKIKNVQIDKSSRFTDWSR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             L+++QL YA +DV HL  + L    +L+R GRS   T   N L  R   D+
Sbjct: 139 RPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLWLTEEMNILESRDTYDM 191


>gi|222148187|ref|YP_002549144.1| ribonuclease D [Agrobacterium vitis S4]
 gi|221735175|gb|ACM36138.1| ribonuclease D [Agrobacterium vitis S4]
          Length = 384

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE L        LC++Q++  D  V +  +A G   AP    ++ +    K+FH  
Sbjct: 21  ITIDTEFLRETTFWPELCLIQMASPDLEVIVDPLAEGLDLAP-FFKLMANGDVIKVFHAA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++F+   +   P+F T++A+ +   + +       ++++  I+I K+ + +DWS 
Sbjct: 80  RQDIEIIFHLGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVQKIKNIHIDKSSRFTDWSR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             LS++QL YA +DV HL  + L    +L+R GR+   +     L  R   DL
Sbjct: 139 RPLSEKQLDYALADVTHLRDVYLTLNAELEREGRASWLSEEMAILESRDTYDL 191


>gi|190575218|ref|YP_001973063.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a]
 gi|190013140|emb|CAQ46772.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a]
          Length = 359

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE +       +L +VQ++ G   + I  +  G   A  L   L DE   K+ H  
Sbjct: 22  IGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMTEA--LAHWLADESITKVMHSA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+    +  GV  RP+F T+I + L        G +  + E+ G+ ++K +  SDW  
Sbjct: 80  SEDLVAFRWACGVLPRPLFDTQIGASLA-GIGGGMGYQKLVAEITGVALAKGETRSDWMR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             LS+ QLQYAA DV HL AL      +LQ LGR
Sbjct: 139 RPLSESQLQYAADDVEHLFALHDAIDARLQALGR 172


>gi|194366535|ref|YP_002029145.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
 gi|194349339|gb|ACF52462.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
          Length = 358

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE +       +L +VQ++ G   + I  +  G   A  L   L DE   K+ H  
Sbjct: 22  IGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMAEA--LAPWLADESIIKVMHSA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+    +  GV  RP+F T+I + L        G +  + E+ G+ ++K +  SDW  
Sbjct: 80  SEDLVAFKWACGVLPRPLFDTQIGASLA-GIGGGMGYQKLVAEITGVALAKGETRSDWMR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             LS+ QLQYAA DV HL A+      KLQ LGR
Sbjct: 139 RPLSESQLQYAADDVEHLFAMHDAIDAKLQALGR 172


>gi|163736203|ref|ZP_02143622.1| ribonuclease D [Phaeobacter gallaeciensis BS107]
 gi|161390073|gb|EDQ14423.1| ribonuclease D [Phaeobacter gallaeciensis BS107]
          Length = 385

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI-- 56
           M T+   E D+ A C AA   D + VDTE L       +LC+VQL+ PG G  + + +  
Sbjct: 1   MKTLTSTE-DLQAFCEAAAQHDYVTVDTEFLRERTYYSKLCLVQLAYPGAGDENAVLVDP 59

Query: 57  -AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
            A G    P L  +  +E   K+FH  R D+ + +    V  +P+F T++A+ +   +  
Sbjct: 60  LADGLSLEP-LYDLFRNETVVKVFHAARQDLEIFWVDAQVFPKPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  +++++   + K  + +DWS   LSD Q  YA +DV HL  +      +L+R G
Sbjct: 118 QVGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKRTG 177

Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
           R+         L D A  D+     W  V   ++S
Sbjct: 178 RARWVEEELQVLTDPATYDVDPQEAWRRVKTRTNS 212


>gi|163741269|ref|ZP_02148661.1| ribonuclease D [Phaeobacter gallaeciensis 2.10]
 gi|161385622|gb|EDQ09999.1| ribonuclease D [Phaeobacter gallaeciensis 2.10]
          Length = 385

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI-- 56
           M T+   E D+ A C AA   D + VDTE L       +LC+VQL+ PG G  + + +  
Sbjct: 1   MKTLTSTE-DLQAFCEAAAQHDYVTVDTEFLRERTYYSKLCLVQLAYPGAGDENAVLVDP 59

Query: 57  -AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
            A G    P L  +  +E   K+FH  R D+ + +    V  +P+F T++A+ +   +  
Sbjct: 60  LADGLSLEP-LYDLFRNETVVKVFHAARQDLEIFWVDAQVFPKPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  +++++   + K  + +DWS   LSD Q  YA +DV HL  +      +L+R G
Sbjct: 118 QVGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKRTG 177

Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
           R+         L D A  D+     W  V   ++S
Sbjct: 178 RARWVEEELQVLTDPATYDVDPQEAWRRVKTRTNS 212


>gi|149915004|ref|ZP_01903533.1| ribonuclease D [Roseobacter sp. AzwK-3b]
 gi|149811192|gb|EDM71029.1| ribonuclease D [Roseobacter sp. AzwK-3b]
          Length = 385

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI--AAGQKNAPNLVGMLVDE 73
           AR  D + VDTE L       +LC+VQL+ PG G  D + +   AG  +   L  +  DE
Sbjct: 17  ARQFDYVTVDTEFLRERTYYSKLCLVQLAVPGTGAEDAVLVDPLAGDLSMAPLYDLFRDE 76

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              K+FH  R D+ + F   GV   P+F T++ + +   +  Q G +  ++++    + K
Sbjct: 77  SVVKVFHAARQDLEIFFVDAGVIPAPLFDTQVTAMVC-GFGEQVGYETLVRKIAKEQLDK 135

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             + +DWS   L+D Q +YA +DV HL  +      KL +  R    T
Sbjct: 136 TSRFTDWSRRPLTDAQKKYALADVTHLRDIYEFLARKLAQSDRQKWVT 183


>gi|86357133|ref|YP_469025.1| RNase D protein [Rhizobium etli CFN 42]
 gi|86281235|gb|ABC90298.1| RNase D protein [Rhizobium etli CFN 42]
          Length = 381

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D I +DTE L        LC++Q++     V +  +A G   AP    ++ D K  K+FH
Sbjct: 19  DFITIDTEFLRETTFWPELCLIQMASPTMEVLVDPLAKGIDLAP-FFELMADTKVLKVFH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F    +   P+F T++A+ +   + +       +  +  ++I K+ + +DW
Sbjct: 78  AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNVHIDKSSRFTDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           S   LS++QL+YA +DV HL  + L  + +L R GR+       + L  R   D+
Sbjct: 137 SRRPLSEKQLEYALADVTHLRDVYLSLSSQLDREGRTSWLREEMDILEARETYDM 191


>gi|316933724|ref|YP_004108706.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
 gi|315601438|gb|ADU43973.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
          Length = 387

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 5/182 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I VDTE L        LC+VQ++  +  + I  +A G    P    ++ +E+  K+FH  
Sbjct: 23  ITVDTEFLRETTFYPLLCVVQMASAEDALVIDALADGIDLKP-FFDLMANEQVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   P+F T++A+ +   Y +       ++ + G    K  + +DWS 
Sbjct: 82  RQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199
             L+ EQ+ YA SDV HL  +       L++ GRSD  +     L   +  D+     WE
Sbjct: 141 RPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEVLTSPSTYDVHPERAWE 200

Query: 200 NV 201
            +
Sbjct: 201 RL 202


>gi|126731278|ref|ZP_01747085.1| ribonuclease D [Sagittula stellata E-37]
 gi|126708189|gb|EBA07248.1| ribonuclease D [Sagittula stellata E-37]
          Length = 385

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA---GQKNAPNLVGMLVDEKREKI 78
           I VDTE L       +LC++QL+ PG G  D + +     G    P L+ +  DE   K+
Sbjct: 23  ITVDTEFLRERTYYSKLCLIQLALPGKGDEDAVLVDPMVDGLSLDP-LLELFRDESIVKV 81

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH  R D+ + F   GV  +P+F T++A+ +   +  Q G +  +K +    + K+ + +
Sbjct: 82  FHAARQDLEIFFIDHGVIPQPLFDTQVAAMVC-GFGEQVGYETLVKRIAKQQLDKSSRFT 140

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           DWS   L+D Q  YA +DV HL  +      KL+  GRS         L D
Sbjct: 141 DWSRRPLTDAQKSYALADVTHLREIYEFLAAKLEESGRSRWVAEELGVLTD 191


>gi|218461991|ref|ZP_03502082.1| RNase D protein [Rhizobium etli Kim 5]
          Length = 293

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D I +DTE L        LC++Q++     V +  +A G   AP    ++ D K  K+FH
Sbjct: 19  DFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP-FFELMADTKVLKVFH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F    +   P+F T++A+ +   + +       +     ++I K+ + +DW
Sbjct: 78  AARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRSKNVHIDKSSRFTDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           S   LSD+QL+YA +DV HL  + L  + +L R GR+       + L  R   D+
Sbjct: 137 SRRPLSDKQLEYALADVTHLRDVYLSLSSQLDREGRTSWLREEMDVLEARETYDM 191


>gi|39936108|ref|NP_948384.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
 gi|39649962|emb|CAE28486.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
          Length = 392

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 5/182 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I VDTE L        LC+VQ++  +  + I  +A G    P    ++ +E+  K+FH  
Sbjct: 23  ITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADGIDLKP-FFDLMANEQVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   P+F T++A+ +   Y +       ++ + G    K  + +DWS 
Sbjct: 82  RQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199
             L+ EQ+ YA SDV HL  +       L++ GRSD  +     L   +  D+     WE
Sbjct: 141 RPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEVLTSPSTYDVHPERAWE 200

Query: 200 NV 201
            +
Sbjct: 201 RL 202


>gi|240850739|ref|YP_002972139.1| ribonuclease D [Bartonella grahamii as4aup]
 gi|240267862|gb|ACS51450.1| ribonuclease D [Bartonella grahamii as4aup]
          Length = 384

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 5/189 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R  D + VDTE +       +LC++QL+  D TV I  IA      P    +++D+K 
Sbjct: 17  ALRTSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAPDIDLQP-FFDLMIDKKV 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH  R DI  +++  GV   P+F T+IA  +   + +       ++   G ++ K+ 
Sbjct: 76  VKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSIC-GFGDSISYDQIVQRCTGHHLDKSS 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           + +DWS   LS++QL YA +DV +L  + L   ++L++  R+         L++    D+
Sbjct: 135 RFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRAHWMDDELTILLNPKTYDM 194

Query: 196 L---GWENV 201
                W+ V
Sbjct: 195 PEDEAWKKV 203


>gi|302037758|ref|YP_003798080.1| ribonuclease D [Candidatus Nitrospira defluvii]
 gi|300605822|emb|CBK42155.1| Ribonuclease D [Candidatus Nitrospira defluvii]
          Length = 401

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 4/158 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--NLVGMLVDEKREKIFH 80
           IA+DTE +G      RL ++Q++  +G   +I   A Q+ AP      ++ D + EK+ H
Sbjct: 30  IAIDTEFMGEEHFIPRLELIQVA-AEGVAAVIDFPAVQEAAPMARFWEIVCDARIEKVLH 88

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
            GR D+ +  +  G   +P F T+IA+ +   Y  Q    + ++ + G+ + KA   ++W
Sbjct: 89  AGRQDLELFAHHAGRLPKPFFDTQIAAAMV-GYGAQTAYANLVQRVQGVKLDKAHTFTNW 147

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           S   LS EQL YA  DV  L  +     +KL  +GRS+
Sbjct: 148 SQRPLSREQLVYALDDVTFLLPVHRHLRQKLSVMGRSE 185


>gi|83858515|ref|ZP_00952037.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633]
 gi|83853338|gb|EAP91190.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633]
          Length = 384

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 16/189 (8%)

Query: 15  CAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           CA  R  + +AVDTE +       +LC++Q +  D  V I  +A G    P    +L D+
Sbjct: 14  CAKLRQAEYVAVDTEFMRESTFWPQLCLIQAAGDDTEVLIDPLAEGLDLQP-FYDLLTDQ 72

Query: 74  KREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNL------KEL 126
              K+FH  R D+ + F+  G +  +P+F ++IA+          GL D++      + L
Sbjct: 73  NVIKVFHACRQDLEIFFHEGGGIIPKPLFDSQIAAMAV-------GLGDSISYDNLVRAL 125

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           + +N+ K  + +DWS   LSD+Q +YA +DV HL  L     EKL ++GR          
Sbjct: 126 VKVNLDKGSRFTDWSRRPLSDKQKEYALADVTHLRDLFPILREKLAKVGREAWLAEEMKT 185

Query: 187 LMDRAELDL 195
           L D A  ++
Sbjct: 186 LTDPATYEM 194


>gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 550

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 3/139 (2%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85
           D ET GL    DR+C VQL+ G+  V ++++  G      L  +L D+   KIFH  RFD
Sbjct: 380 DIETTGLNWYADRICTVQLACGN-RVAVVQLPEGH-TPQRLSQILGDQNILKIFHNARFD 437

Query: 86  IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-HGLKDNLKELLGINISKAQQSSDWSADD 144
           +  + Y + V  + V CT    RL        H L++ L+  L + I K Q  SDW+   
Sbjct: 438 LRFMVYHWSVIPQNVACTLELVRLLNPRERAGHTLREVLERYLAVQIIKDQTCSDWTTAQ 497

Query: 145 LSDEQLQYAASDVVHLHAL 163
           L+ EQ++YA +DV +L  L
Sbjct: 498 LTQEQIRYATNDVRYLPVL 516


>gi|192291826|ref|YP_001992431.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
 gi|192285575|gb|ACF01956.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
          Length = 392

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 5/182 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I VDTE L        LC+VQ++  +  + I  +A G    P    ++ +E+  K+FH  
Sbjct: 23  ITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADGIDLKP-FFDLMANEQVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   P+F T++A+ +   Y +       ++ + G    K  + +DWS 
Sbjct: 82  RQDIEIVWHRAGIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199
             L+ EQ+ YA SDV HL  +       L++ GRSD  +     L   +  D+     WE
Sbjct: 141 RPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEVLTSPSTYDVHPERAWE 200

Query: 200 NV 201
            +
Sbjct: 201 RL 202


>gi|49474343|ref|YP_032385.1| ribonuclease D [Bartonella quintana str. Toulouse]
 gi|49239847|emb|CAF26240.1| Ribonuclease D [Bartonella quintana str. Toulouse]
          Length = 404

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A  A R  D + VDTE +       +LC++QL+  D T+ I  +A      P    ++VD
Sbjct: 34  ALAALRPSDFVTVDTEFIRETTFWPQLCLIQLASPDVTMLIDPMAQDMDLKP-FFDLMVD 92

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           EK  K+FH  R DI ++++  GV   P+F T+IA  +   + +       ++   G  + 
Sbjct: 93  EKIVKVFHAARQDIEIIYHLGGVIPYPLFDTQIAGSIC-GFGDSISYDQIVQRCTGHQLD 151

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           K+ + +DWS   LS++QL YA +DV +L  + L   ++L++  R
Sbjct: 152 KSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKR 195


>gi|254522754|ref|ZP_05134809.1| ribonuclease D [Stenotrophomonas sp. SKA14]
 gi|219720345|gb|EED38870.1| ribonuclease D [Stenotrophomonas sp. SKA14]
          Length = 359

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 12  PAECAARY---VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           PAE  A +      I +DTE +       +L +VQ++ G   + I  +  G   A  L  
Sbjct: 8   PAELDAYFQQRPSRIGLDTEFIRERTFWPQLALVQMAVGRDILLIDPLIPGMTEA--LAP 65

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
            L DE   K+ H    D+    +  GV  RP+F T+I + L        G +  + E+ G
Sbjct: 66  WLADESIIKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLA-GIGGGMGYQKLVAEITG 124

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           + ++K +  SDW    LS+ QLQYAA DV HL AL      +LQ LGR
Sbjct: 125 VALAKGETRSDWMRRPLSESQLQYAADDVEHLFALHDAIGARLQALGR 172


>gi|163792851|ref|ZP_02186827.1| Ribonuclease D [alpha proteobacterium BAL199]
 gi|159181497|gb|EDP66009.1| Ribonuclease D [alpha proteobacterium BAL199]
          Length = 386

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 2/169 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTE +       +LC+VQL+  D  V +  +A G   AP L  ++ +    K+FH  
Sbjct: 23  VAVDTEFMRDKTYYAKLCLVQLAGADEAVAVDTLAPGIDLAP-LYALMANPDVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +  +       P+F T+IA+ +   + +       ++ L G+ + K  + +DWS 
Sbjct: 82  RQDVEIFVHQADAVPAPLFDTQIAAMVC-GFGDAVSYDRLVRGLTGVKLDKTSRFTDWSH 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             LS  Q++YA +DV+HL     +   KL++ GR +  +     L D A
Sbjct: 141 RPLSSRQIEYALADVIHLRPAYEKLHRKLEKTGRLEWLSEEMAVLTDTA 189


>gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens]
          Length = 388

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  DTE L        LC+VQ++     V +  +A G    P +  ++ +    K+FH  
Sbjct: 21  ITTDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDLTP-MFELMANPNVVKVFHAA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   P+F T++A+ +   + +       ++++  + I K+ + +DWS 
Sbjct: 80  RQDIEIIYHLGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVQKIKNVQIDKSSRFTDWSR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             L+++QL YA +DV HL  + L    +L+R GRS   T   N L  R   D+
Sbjct: 139 RPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLWLTEEMNILESRDTYDM 191


>gi|148255258|ref|YP_001239843.1| ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1]
 gi|146407431|gb|ABQ35937.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1]
          Length = 384

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 5/181 (2%)

Query: 9   GDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
            D+ A CA  A++   I VDTE L        LC+VQ++  D  + I  +A G  +  + 
Sbjct: 8   ADLSAACARLAQH-PVITVDTEFLRETTYYPLLCVVQMASPDEALVIDALAEGI-DLTSF 65

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             ++ +EK  K+FH  R DI ++++   +   P+F T++A+ +   Y +       ++ +
Sbjct: 66  FELMANEKVLKVFHAARQDIEIIWHRANIVPHPIFDTQVAA-MVLGYGDSIAYDQLVERI 124

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
            G    K  + +DWS   LS EQ+ YA +DV HL  +       L++ GRSD  +     
Sbjct: 125 TGHRPDKTHRFTDWSRRPLSKEQVHYAEADVTHLRDVFAALDADLKKRGRSDWVSEEMEI 184

Query: 187 L 187
           L
Sbjct: 185 L 185


>gi|126725300|ref|ZP_01741142.1| ribonuclease D [Rhodobacterales bacterium HTCC2150]
 gi|126704504|gb|EBA03595.1| ribonuclease D [Rhodobacterales bacterium HTCC2150]
          Length = 385

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 1   MTTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGD---GTVDII 54
           M TI   E D+   C  AA++   + VDTE L       +LC+VQL+ PGD     V + 
Sbjct: 1   MRTITTTE-DLAEYCTQAAKF-PYVTVDTEFLRERTYYAKLCLVQLAMPGDDDSNAVLVD 58

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
            +A G   AP L  +  DE   K+FH  R D+ + F   GV   P+F T++A+ +   + 
Sbjct: 59  PLAKGLSLAP-LYDLFRDENVVKVFHAARQDLEIFFVEEGVIPSPLFDTQVAAMVC-GFG 116

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           +Q G +  ++++    + K+ + +DWS   LSD Q  YA +DV HL  +     ++L++ 
Sbjct: 117 DQVGYETLVRKIAREAVDKSSRFTDWSRRPLSDAQKTYALADVTHLRVVYEYLAKELEKS 176

Query: 175 GRSDLATSCCNFLMD 189
            R+   T     L +
Sbjct: 177 KRTKWVTEELGVLTE 191


>gi|58584516|ref|YP_198089.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58418832|gb|AAW70847.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 399

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 3/169 (1%)

Query: 10  DIPAECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           DI  E  A+    IA DTE +   +    RL ++Q+S G+ +  I+   A + +   +  
Sbjct: 11  DICEELIAKKPKFIAADTEFIRNHLTYYPRLSLIQISYGEKSF-IVDALAPEVDLSFIKK 69

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++++ +  K+FH  R DI  LF  F     P+F T++A+     Y +  G    +++  G
Sbjct: 70  IMLNREITKVFHSCRQDIESLFTVFKCIPAPIFDTQVAAMFCHYYHDFIGYSKVVEQYQG 129

Query: 129 INISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           + + K + ++SDW    LS +QL YA SDVVHL+ L     ++L+  GR
Sbjct: 130 VVLDKIKAKNSDWLRRPLSKDQLDYAISDVVHLYDLHQILCDRLEESGR 178


>gi|154247067|ref|YP_001418025.1| ribonuclease D [Xanthobacter autotrophicus Py2]
 gi|154161152|gb|ABS68368.1| ribonuclease D [Xanthobacter autotrophicus Py2]
          Length = 382

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 2/169 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE L       +LC+VQ++  +  V I  +A G   AP    ++ +E+  K+FH G
Sbjct: 23  VTVDTEFLRETTFWPKLCVVQVASPEEAVLIDALADGLDLAP-FYRLMANERVMKVFHAG 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++   +   PVF T++A+ +   Y +       ++ + G  + K+ + +DWS 
Sbjct: 82  RQDIEIIWHQARLIPHPVFDTQVAA-MVLGYGDSISYDQLVQRVTGHALDKSSRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             LS  Q+ YA +DV HL  + ++ T  L+  GR++      + L   A
Sbjct: 141 RPLSQAQIVYAVADVTHLRDIYIKLTTDLETRGRAEWVGEEMHVLTSPA 189


>gi|89069870|ref|ZP_01157204.1| ribonuclease D [Oceanicola granulosus HTCC2516]
 gi|89044546|gb|EAR50665.1| ribonuclease D [Oceanicola granulosus HTCC2516]
          Length = 385

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 8/181 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI-- 56
           M TI   E D+   CA A     + VDTE L        LC+VQL+ PGDG  D + +  
Sbjct: 1   MRTITTTE-DLATFCAEAAKAPYVTVDTEFLRERTYYPHLCLVQLAYPGDGKTDAVLVDP 59

Query: 57  -AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
              G   AP L  +  D    K+FH  R D+ + ++   V   P+F T++A+ +   +  
Sbjct: 60  LEGGLDLAP-LYALFQDHGVVKVFHAARQDLEIFWHGGQVIPEPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  ++++   N+ K+ + +DWS   LS+ Q +YA +DV HL  +  +   +L + G
Sbjct: 118 QVGYETLVRKIARENLDKSSRFTDWSRRPLSEAQKRYALADVTHLRVIYEELKAELDKSG 177

Query: 176 R 176
           R
Sbjct: 178 R 178


>gi|126737525|ref|ZP_01753255.1| ribonuclease D [Roseobacter sp. SK209-2-6]
 gi|126720918|gb|EBA17622.1| ribonuclease D [Roseobacter sp. SK209-2-6]
          Length = 388

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 10/201 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI---AAGQKNAPNLVGM 69
           E AA+Y   + VDTE L       +LC++QL+  GDG  D + +   A G    P L  +
Sbjct: 15  EEAAQYA-YVTVDTEFLRERTYYSKLCLIQLAFAGDGEEDAVLVDPLAEGLALDP-LYDL 72

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             +E   K+FH  R D+ + +   GV  +P+F T++A+ +   +  Q G +  ++++   
Sbjct: 73  FRNEAVVKVFHAARQDLEIFWVDAGVFPKPLFDTQVAAMVC-GFGEQVGYETLVRKIAKQ 131

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           ++ K+ + +DWS   LS  Q  YA +DV HL  +     ++L++ GRS         L D
Sbjct: 132 SLDKSSRFTDWSRRPLSGAQKTYALADVTHLRRIYEFLAKELEKSGRSHWVAEELKVLTD 191

Query: 190 RAELDLL---GWENVDIFSHS 207
            A  D+     W  V   + S
Sbjct: 192 PATYDIRPEEAWRRVKTRTSS 212


>gi|299133731|ref|ZP_07026925.1| ribonuclease D [Afipia sp. 1NLS2]
 gi|298591567|gb|EFI51768.1| ribonuclease D [Afipia sp. 1NLS2]
          Length = 382

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 2/165 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE L        LC+VQL+  D  V +  +A G    P    ++ DEK  K+FH  
Sbjct: 23  VTVDTEFLRETTYYPLLCVVQLASSDEAVVVDALAEGIDLKP-FFDLMADEKVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   PVF T++A+ +   Y +       +  + G  + K  + +DWS 
Sbjct: 82  RQDIEIVWHLAGIVPHPVFDTQVAA-MVLGYGDSIAYDQLVGRITGHKLDKTHRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
             L+ EQ  YA +DV HL  +       L++  R+D  +   + L
Sbjct: 141 RPLTKEQSAYALADVTHLRDVFTALDADLKKRKRADWVSEEMDVL 185


>gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3]
 gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3]
          Length = 386

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE L        LC+VQ++     V +  +A G    P L  ++ +    K+FH  
Sbjct: 21  ITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDLTP-LFELMANPDVVKVFHAA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   P+F T++A+ +   + +       ++ +  + I K+ + +DWS 
Sbjct: 80  RQDIEIIYHLGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVQRIKNVQIDKSSRFTDWSR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             L+++QL YA +DV HL  + L    +L+R GRS   T   + L  R   D+
Sbjct: 139 RPLTEKQLDYALADVTHLRDVYLALKAQLEREGRSLWLTEEMDILESRETYDM 191


>gi|103487237|ref|YP_616798.1| ribonuclease D [Sphingopyxis alaskensis RB2256]
 gi|98977314|gb|ABF53465.1| ribonuclease D [Sphingopyxis alaskensis RB2256]
          Length = 395

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 6/189 (3%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIF 79
           D IAVDTE +        LC++Q++  +    I  +A G    P L+ +LVD E   K+F
Sbjct: 24  DFIAVDTEFMRENTFWPELCLIQVADTEHAAAIDPMAQGMDLKP-LLDLLVDNEDMLKVF 82

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H G  D+ ++F   G    P+F T+I  ++      Q G  + ++  LG+ + K  + +D
Sbjct: 83  HAGGQDVEIIFNLTGKTPHPIFDTQI-GQMALGQAEQVGYSNLVEAWLGLQLDKGARFTD 141

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---L 196
           WS   L   Q+ YA  DV HL  +     +KL R GR          L D A   +    
Sbjct: 142 WSRRPLDKRQIDYAIGDVTHLAKIFPMMLDKLIRTGRGHWLDEEMEKLADPANYSVDPDK 201

Query: 197 GWENVDIFS 205
            W+ + I S
Sbjct: 202 AWQRIKIPS 210


>gi|75675781|ref|YP_318202.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
 gi|74420651|gb|ABA04850.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
          Length = 382

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 5/182 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I VDTE L        LC++QL+  D  V +  +A G    P    ++ +E   K+FH  
Sbjct: 23  ITVDTEFLRETTYYPLLCVIQLASPDEAVVVDALAGGIDLKP-FFALMSNESVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   PVF T++A+ +   + +       ++ + G    K  + +DWS 
Sbjct: 82  RQDIEIIWHQAGLIPHPVFDTQVAA-MVLGHGDSIAYDALVERITGHRPDKTHRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199
             L+ EQL+YA +DV HL  +       L + GRSD  +     L      D      WE
Sbjct: 141 RPLTAEQLEYAVADVTHLRDVFAALDADLSKRGRSDWVSEEMEVLTSPKTYDFHPERAWE 200

Query: 200 NV 201
            +
Sbjct: 201 RL 202


>gi|332702439|ref|ZP_08422527.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
 gi|332552588|gb|EGJ49632.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
          Length = 409

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 3/177 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R  DA+ +DTE +        L ++QL   DG V ++    G  +   LV +L D +  K
Sbjct: 43  RGCDAVGMDTEFVRSRTYFPTLGLIQLV-ADGGVFLVD-PLGVDDLSPLVEILADPRLIK 100

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           IFH  + D+  L+Y  G    PVF T++A+     Y  Q G    +K L G+ + K +  
Sbjct: 101 IFHSCQEDLEALYYLCGFAPGPVFDTQVAASFL-GYGFQPGYGSLVKALFGVELDKDETR 159

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
           S+W    LS+ QL YAA DV +L A+     + L   GR   A   C  L   A  +
Sbjct: 160 SNWIKRPLSESQLIYAAQDVRYLPAMYSILGQALTEQGRLSWAREECAALEGEARFE 216


>gi|167646508|ref|YP_001684171.1| ribonuclease D [Caulobacter sp. K31]
 gi|167348938|gb|ABZ71673.1| ribonuclease D [Caulobacter sp. K31]
          Length = 389

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 3/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVDTE +       +LC++Q++  D    I  +A G    P L+ +L D    K+FH  
Sbjct: 23  IAVDTEFMRETTYWPKLCLIQVASPDIEACIDPLAEGMDLEP-LLEILRDPGVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + F        P+F T++A  +   +  Q      ++++L I + K+ + +DW+ 
Sbjct: 82  RQDVEI-FNNLNAMPTPLFDTQVAG-MAAGFGEQIAYDALVRQMLKIELDKSSRFTDWAR 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             LSD QL YA +DV HL  L     E+L++ GR          L D A  D+
Sbjct: 140 RPLSDAQLTYAVADVTHLATLFPILRERLEKAGRLAWVEEEMKALNDPAAYDV 192


>gi|170746940|ref|YP_001753200.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
 gi|170653462|gb|ACB22517.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
          Length = 395

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 1/154 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC++Q++  DGT  ++   A   +    + ++ DE+  K+FH  
Sbjct: 23  VTVDTEFMRETTYYPKLCLIQMAAPDGTAVLVDPLAPGIDLDPFIALMADERTVKVFHSA 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++   G+   P F T++A+ +   Y +    +  + ++    I K+ + +DWS 
Sbjct: 83  RQDLEIIWLIGGILPHPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKAKIDKSSRFTDWSR 141

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             LS+ QL YA SDV HL  +      +L R  R
Sbjct: 142 RPLSEAQLTYALSDVTHLVKIYEVLVAELLRTDR 175


>gi|326388937|ref|ZP_08210519.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206537|gb|EGD57372.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370]
          Length = 445

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 5/169 (2%)

Query: 13  AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A+  AR   A  + VDTE +        LC+VQ++       I  +A G   +P L+ +L
Sbjct: 14  ADICARLAKAEFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPMAPGIDLSP-LLDLL 72

Query: 71  VD-EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           VD E   K+FH G  D+ +++   G    P+F T+IA  +  + + Q G  + ++  LG 
Sbjct: 73  VDNEDVLKVFHAGGQDVEIIYNLTGRTPHPIFDTQIAM-MAVSQSEQIGYSNLVESWLGF 131

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +I K  + +DWS   L++ Q++YA  DV HL  +  +  ++L + GR +
Sbjct: 132 SIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPRILKRLIKTGRGE 180


>gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
          Length = 388

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 6/162 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV-DEKREKI 78
           V AIA+DTE        DR+ ++QLS  D    I  +  G    P  +G+L+ D + E +
Sbjct: 25  VRAIALDTEGASFHRFVDRIYLLQLSTADHEAVIDPLPIG---TPTRLGVLLEDPQVEVV 81

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H   +D+ +L   +G RV  +F T++A++L        GL   L++  GI + K  Q +
Sbjct: 82  LHDADYDLRLLRQDYGWRVTHLFDTRVAAQLL--GIRAFGLAALLEQFFGIKLDKKHQRA 139

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DWS   L+ + L YAA D  HL  LR +  ++L + GR   A
Sbjct: 140 DWSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKGRWSWA 181


>gi|251792786|ref|YP_003007512.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
 gi|247534179|gb|ACS97425.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
          Length = 385

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 3/169 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A+A+DTE +       +L ++QL  GD  V +I     Q  +P  + +L DE+  K+ H 
Sbjct: 35  AVALDTEFVRTRTFYPKLGLIQLYAGD-EVALIDPTTIQDFSP-FIALLADERVTKVLHA 92

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+ V  + F    +P+  T++ +     + N  G    +K    I I K    +DW 
Sbjct: 93  SGEDLEVFQHYFQQLPQPMCDTQVVANFL-GFANSPGFATLVKHYFQIEIDKGASCTDWL 151

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           A  LSD QLQYAA+DV +L  L  Q   +L +        + C FL+++
Sbjct: 152 ARPLSDTQLQYAAADVWYLLPLYQQMKAQLAQTEWQSAVENECEFLLNK 200


>gi|77917938|ref|YP_355753.1| RNase D [Pelobacter carbinolicus DSM 2380]
 gi|77544021|gb|ABA87583.1| RNase D [Pelobacter carbinolicus DSM 2380]
          Length = 375

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVD E   L   ++++C++Q+S    TV +  +A   ++   L  +L D    KIFH  
Sbjct: 26  IAVDLEADSLHSYQEKVCLLQISTSTRTVLVDPLAV--EDLAALAPVLADPTIRKIFHAA 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +DI  LF  F + V+ +F T IA ++      + GL D L + L + + K  Q +DWS 
Sbjct: 84  DYDIRCLFRDFRIEVQGLFDTMIACQML--GEKRVGLADVLAKYLDVELDKRYQRADWSK 141

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L +  + YA  D  HLH L      +L+ +GR
Sbjct: 142 RPLEEGMILYAMEDTCHLHRLTEILEGRLRDMGR 175


>gi|85717198|ref|ZP_01048155.1| ribonuclease D [Nitrobacter sp. Nb-311A]
 gi|85695978|gb|EAQ33879.1| ribonuclease D [Nitrobacter sp. Nb-311A]
          Length = 420

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 7/194 (3%)

Query: 13  AECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A   AR+     I VDTE L        LC++Q++  D  + I  +A G  +  +   ++
Sbjct: 49  ASVCARFAKHPVITVDTEFLRETTYYPLLCVIQMASPDEAIAIDALAEGI-DLNSFFTLM 107

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            +E   K+FH  R DI ++++  G+   PVF T++A+ +   Y +       ++ + G  
Sbjct: 108 SNEGVLKVFHAARQDIEIIWHQAGIIPHPVFDTQVAA-MVLGYGDSIAYDALVERVTGHR 166

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             K  + +DWS   L+ EQL+YA +DV HL  +       L++ GRSD  +     L   
Sbjct: 167 PDKTHRFTDWSRRPLTAEQLEYAVADVTHLRDVFAALDVDLRKRGRSDWVSEEMEILTSP 226

Query: 191 AELDL---LGWENV 201
              D      WE +
Sbjct: 227 KTYDFHPERAWERL 240


>gi|83951561|ref|ZP_00960293.1| ribonuclease D [Roseovarius nubinhibens ISM]
 gi|83836567|gb|EAP75864.1| ribonuclease D [Roseovarius nubinhibens ISM]
          Length = 385

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGD---GTVDIIRIAAGQKNAPNLVGMLVD 72
           AR    + VDTE L       +LC+VQL+ PG+   G V +  +A G    P L  +  D
Sbjct: 17  ARKHPYVTVDTEFLRERTYYSKLCLVQLAMPGEDDAGAVLVDPLAEGLSLEP-LYELFRD 75

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           E   K+FH  R D+ + +   G+  +P+F T++A+ +   +  Q G +  ++ +    + 
Sbjct: 76  ENVVKVFHAARQDLEIFYVDAGLIPQPLFDTQVAAMVC-GFGEQVGYETLVRRIAKEQLD 134

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K+ + +DWS   LS+ Q +YA  DV HL  +      +L++ GR          LMD A
Sbjct: 135 KSSRFTDWSRRPLSEAQKKYALGDVTHLRRIYEYLAAELEKSGRDAWVKEELGTLMDPA 193


>gi|304321318|ref|YP_003854961.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
 gi|303300220|gb|ADM09819.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
          Length = 383

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +       +LC++Q++  +    I  +AA    AP L  +L D    K+FH
Sbjct: 21  DFVTVDTEFMRERTYYPKLCLIQVASTEEAAIIDPLAAALDLAPFL-ELLADPSVLKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +   G    P+F T+IA+ +   + +Q G +  ++E+ G  + K  + +DW
Sbjct: 80  AARQDLEIFYKLMGKVPAPLFDTQIAA-MACGHGDQVGYEALIREVTGAQVDKGSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           +   LSD+QL YA  DV HL         +L+  GR
Sbjct: 139 AKRPLSDKQLTYALGDVTHLVDAYQALITELEEKGR 174


>gi|284046840|ref|YP_003397180.1| ribonuclease D [Conexibacter woesei DSM 14684]
 gi|283951061|gb|ADB53805.1| Ribonuclease D [Conexibacter woesei DSM 14684]
          Length = 396

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 7/180 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDG-TVDIIRIAA----GQKNAPNLVGMLV 71
           AR    + +DTE +     R  LC+VQ++  D    + +RIA      + +   L  +L 
Sbjct: 22  ARAAGRLGIDTEFMSEGRYRALLCLVQVAVDDADAPNGVRIALFDPFDKLDFAPLAAVLA 81

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D + E + H  R D+A++   +   VR VF T++A+     Y  Q G  + L   LG  +
Sbjct: 82  DPEIEIVLHAARQDVAIMRRAWRTDVREVFDTQVAAGFA-GYGAQTGYGNLLGAALGQRV 140

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
            K    + W A  L++EQL YAA DV+HL  L     +KL   GR   A   C   MD A
Sbjct: 141 GKTASYTRWDARPLTEEQLSYAAEDVLHLLQLSDALHDKLSAHGRLQWAQEECRR-MDEA 199


>gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H]
 gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H]
          Length = 396

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +        LC+VQL+  +  V I  +A G   AP L  +L      K+FH  
Sbjct: 33  VTIDTEFVRERTYWPELCLVQLAGTEDVVLIDTLAPGIDLAP-LGALLAKPDCTKVFHAA 91

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +  + F      VF T++A+ +   + +Q G    +  + G +I KA + SDWSA
Sbjct: 92  RQDLEIFLHIFDRLPASVFDTQVAA-MVAGFGDQVGYDSLVGAITGRSIDKAHRFSDWSA 150

Query: 143 DDLSDEQLQYAASDVVHLH----ALRLQFTEK 170
             LS  Q+ YAA+DV HL     ALR Q  E+
Sbjct: 151 RPLSKAQIAYAATDVTHLRTVYDALRKQLAEQ 182


>gi|114767452|ref|ZP_01446239.1| ribonuclease D [Pelagibaca bermudensis HTCC2601]
 gi|114540462|gb|EAU43543.1| ribonuclease D [Roseovarius sp. HTCC2601]
          Length = 385

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 6/193 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI-- 56
           M TI   E D+ A C+ A     + VDTE L       +LC++QL+ PG G  + + +  
Sbjct: 1   MKTITSTE-DLAAFCSEAATAPYVTVDTEFLRERTYYSKLCLIQLAYPGQGDENAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            AG+ +   L+ +  +    K+FH  R D+ + F   GV   P+F T++A+ +   +  Q
Sbjct: 60  LAGELSLEPLLELFRNTNVVKVFHAARQDLEIFFIDHGVIPDPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +K +    + K+ + +DWS   L+D Q +YA +DV HL  +      +L+R GR
Sbjct: 119 VGYETLVKRIAKQGLDKSSRFTDWSRRPLTDAQKKYALADVTHLRVIYEYLAAELERTGR 178

Query: 177 SDLATSCCNFLMD 189
           +         L D
Sbjct: 179 ARWVAEELGVLTD 191


>gi|86138715|ref|ZP_01057288.1| ribonuclease D [Roseobacter sp. MED193]
 gi|85824775|gb|EAQ44977.1| ribonuclease D [Roseobacter sp. MED193]
          Length = 385

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 92/192 (47%), Gaps = 9/192 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI---AAGQKNAPNLVGMLVDEKREKI 78
           + VDTE L       +LC++Q++  GDG  D + +   + G    P L  +  DE   K+
Sbjct: 23  VTVDTEFLRERTYYSKLCLIQIAFSGDGENDAVLVDPLSEGLSLEP-LYALFRDESVVKV 81

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH  R D+ + +    V  +P+F T++A+ +   + +Q G +  +++++   + K+ + +
Sbjct: 82  FHAARQDLEIFWVDANVFPKPLFDTQVAAMVC-GFGDQVGYETLVRKIVKEGVDKSSRFT 140

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL-- 196
           DWS   LS+ Q  YA +DV HL  +       L+R GRS         L D A  ++   
Sbjct: 141 DWSRRPLSEAQQAYALADVTHLRRVYEYLAADLERSGRSHWVAEELQVLTDPATYNIQPQ 200

Query: 197 -GWENVDIFSHS 207
             W  V   + S
Sbjct: 201 DAWRRVKTRTSS 212


>gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
 gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
          Length = 392

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 8/146 (5%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            D IA+DTE L       +LC+VQ +  D    +D +R+   Q     L  +  D    K
Sbjct: 23  TDWIALDTEFLREKTYYPQLCLVQAATLDQLACIDPLRLDIQQ-----LAPLFRDPGITK 77

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +FH    D+ +L+   G    PVF T+IA+ +   Y  Q G  + +K +L  ++ K+Q  
Sbjct: 78  VFHAASQDMELLYRELGFVPSPVFDTQIAASML-GYGEQVGYANLVKTVLERDLDKSQTR 136

Query: 138 SDWSADDLSDEQLQYAASDVVHLHAL 163
           +DWS   LS EQ++YAA DV HL  L
Sbjct: 137 TDWSRRPLSAEQIRYAADDVRHLATL 162


>gi|114569802|ref|YP_756482.1| ribonuclease D [Maricaulis maris MCS10]
 gi|114340264|gb|ABI65544.1| ribonuclease D [Maricaulis maris MCS10]
          Length = 386

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 16/164 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTE +       +LC++Q + G+  V I  +A G    P    ++ DE+  K+FH  
Sbjct: 23  VAVDTEFMRETVYWPQLCLIQAAAGETEVIIDPLAEGIDLEP-FWELMADERIIKVFHAA 81

Query: 83  RFDIAVLFYTFG--VRVRPVFCTKIASRLTRTYTNQHGLKDNL------KELLGINISKA 134
           R D+ + F+  G  +   P+F +++A+          GL D++      + LL   I K 
Sbjct: 82  RQDLEIFFHQGGDALIPHPMFDSQVAAMAL-------GLGDSIAYDALVRTLLNRPIDKG 134

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            + +DWS   LSD Q +YA +DV HL  L     E+L++ GR++
Sbjct: 135 PRFTDWSRRPLSDAQTKYAIADVTHLRDLYPMMVERLEKTGRTE 178


>gi|300024345|ref|YP_003756956.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526166|gb|ADJ24635.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
          Length = 384

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D +AVDTE L        LC++QL+  +    +  +A G   AP    ++ D    K+FH
Sbjct: 21  DYVAVDTEFLREQTFWPLLCLIQLAGPEAEAIVDPLAPGLDLAP-FYHLMADTSTVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++F   GV   PVF +++A+ +   + +     + +K+  G ++ K+ + +DW
Sbjct: 80  AARQDIEIVFLKSGVVPTPVFDSQVAAMVC-GFGDSISYVNLVKKTTGADLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           S   LS +QL YA +DV +L  +  +  + L + GR+
Sbjct: 139 SRRPLSPKQLDYALADVTYLRDVYQRLRQTLDKTGRT 175


>gi|254486025|ref|ZP_05099230.1| ribonuclease D [Roseobacter sp. GAI101]
 gi|214042894|gb|EEB83532.1| ribonuclease D [Roseobacter sp. GAI101]
          Length = 385

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS-PG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           D + +DTE L       +LC++Q++ PG  D    ++   AG  +   L  +  D    K
Sbjct: 21  DYVTIDTEFLRERTYYSKLCLIQMAMPGTDDSGAVLVDPLAGDMSLEPLYALFRDTSVVK 80

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +FH  R D+ + F   GV   P+F T++A+ +   +  Q G +  ++++    + K  + 
Sbjct: 81  VFHAARQDLEIFFVDAGVFPEPLFDTQVAAMVC-GFGEQVGYETLVRKIAHQAVDKTSRF 139

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           +DWS   L+D Q +YA +DV HL  +      KL+  GR+
Sbjct: 140 TDWSRRPLTDAQAKYALADVTHLRQVYEFLARKLEETGRA 179


>gi|46202610|ref|ZP_00208583.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 398

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC+VQ++  D    I  +A G    P L  ++ D    K+FH  
Sbjct: 23  VTVDTEFMREKTYWPQLCLVQVAGPDEARAIDPLAPGMDLTP-LFELMADTNVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +  +       P+F T+IA+ +   + +  G +    +L    I K+ + +DWS 
Sbjct: 82  RQDVEIFLHLADAIPTPIFDTQIAA-MVCGFGDSVGYETLASQLAKARIDKSMRFTDWSI 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             LS++Q+QYA +DV HL     +   KL+R GR
Sbjct: 141 RPLSEKQIQYALADVTHLRVAYEKLVRKLERNGR 174


>gi|319404161|emb|CBI77754.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 383

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 86/163 (52%), Gaps = 2/163 (1%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            A R  + + VDTE +       +LC++Q++  D T+ +I   A   N      +++D+K
Sbjct: 15  AALRKSNFVTVDTEFIRKTTFWPQLCLIQVASPDITI-LIDPMAQDINLQPFFDLMIDKK 73

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+FH  R DI ++++  G+   P+F T++A  +   + +       ++   G ++ K+
Sbjct: 74  VVKVFHAARQDIEIIYHLGGIIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLDKS 132

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            + +DWS   LS++QL YA SDV +L  + L   ++L+   R+
Sbjct: 133 SRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRT 175


>gi|99081315|ref|YP_613469.1| ribonuclease D [Ruegeria sp. TM1040]
 gi|99037595|gb|ABF64207.1| ribonuclease D [Ruegeria sp. TM1040]
          Length = 385

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 8/198 (4%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI--AAGQKNAPNLVGMLVD 72
           AA+Y   + VDTE L       +LC++Q++  GDG  D + +   +G  +   L  +  +
Sbjct: 17  AAKY-PYVTVDTEFLRERTYYSKLCLIQIAYRGDGETDAVLVDPLSGDLSLEPLYELFRN 75

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           E   K+FH  R D+ + +   GV  +P+F T++A+ +   +  Q G +  ++++    + 
Sbjct: 76  EDVVKVFHAARQDLEIFWVDAGVFPKPLFDTQVAAMVC-GFGEQVGYETLVRKICKQGLD 134

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           K  + +DWS   LSD Q  YA +DV HL  +     ++L +  RS         L D A 
Sbjct: 135 KTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLRKELDKTKRSHWVAEELQVLTDPAT 194

Query: 193 LDLL---GWENVDIFSHS 207
            ++     W  V   ++S
Sbjct: 195 YNIQPREAWRRVKTRTNS 212


>gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2]
 gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2]
          Length = 377

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 87/182 (47%), Gaps = 13/182 (7%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQ 60
           I  HE  + A C AAR    +A+DTE L       RLC+VQ++  +    VD + I    
Sbjct: 3   ISTHE-QLAALCDAARSFSIVAIDTEFLRERTYHPRLCLVQVATPEVSALVDPLEI---- 57

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--TRTYTNQHG 118
           ++   L  ++ DE   KIFH    D+ VL     V   P+F T++A+     R   +  G
Sbjct: 58  EDLSPLAALMADEGTRKIFHACSQDMEVLLNALDVLPNPIFDTQVAAAFLGERVQMSYDG 117

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L   +K   G+++ K    +DWS   L+ EQ+ YA  DV +L        E+L++ GR  
Sbjct: 118 L---VKAFCGVSLPKTASLTDWSHRPLTAEQMDYAEDDVRYLICAYEVMAERLEQRGRMS 174

Query: 179 LA 180
            A
Sbjct: 175 WA 176


>gi|209885458|ref|YP_002289314.1| ribonuclease D [Oligotropha carboxidovorans OM5]
 gi|209873654|gb|ACI93450.1| ribonuclease D [Oligotropha carboxidovorans OM5]
          Length = 386

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 2/169 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE L        LC+VQL+  D  V +  +A G    P    ++ +EK  K+FH  
Sbjct: 23  VTVDTEFLRETTYYPLLCVVQLASTDEAVVVDALAEGIDLKP-FFDLMANEKVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++   +   PVF T++A+ +   Y +       +  + G  + K  + +DWS 
Sbjct: 82  RQDIEIVWHLANIVPHPVFDTQVAA-MVLGYGDSIAYDQLVGRITGHKLDKTHRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             L+ EQ  YA +DV HL  + L     L++  R+D  +     L   A
Sbjct: 141 RPLTQEQTTYALADVTHLRDVFLVLDADLKKRNRADWVSEEMQILTSPA 189


>gi|294084191|ref|YP_003550949.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663764|gb|ADE38865.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 409

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 4/157 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           +A+DTE +       +LC++Q+  GDGT  + I   A   N   L  ++ DE   K+FH 
Sbjct: 50  LAIDTEFMRERTYYPQLCLIQV--GDGTKAVAIDPLAKNLNLEPLWSLMRDESIIKVFHA 107

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
           G  D+ +     G    PV+ T+IA  L   + +Q G    +K +LG N+ K  + +DWS
Sbjct: 108 GNQDMEIFLNEMGGLPSPVYDTQIAG-LVCGHGDQIGYDSLVKSILGKNVDKTSRFTDWS 166

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
              L+D Q+ YA  DV++L  +     +K+    R++
Sbjct: 167 KRPLTDRQISYALDDVIYLAQIYPIMLDKIASENRTN 203


>gi|56697032|ref|YP_167394.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
 gi|56678769|gb|AAV95435.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
          Length = 385

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 10/206 (4%)

Query: 10  DIPAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAP 64
           ++ A C A    A + VDTE L       +LC++QL+ PG   D  V +  +A G +  P
Sbjct: 9   ELAAFCKAAASHAYVTVDTEFLRERTYYSKLCLIQLAYPGEDADSAVLVDPLAEGLELEP 68

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  D    K+FH  R D+ + +   GV   P+F T++A+ +   +  Q G +  ++
Sbjct: 69  -LYTLFRDTSVVKVFHAARQDLEIFWVDAGVFPEPLFDTQVAAMVC-GFGEQVGYETLVR 126

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ++    + K  + +DWS   LSD Q  YA +DV HL  +       L + GRS       
Sbjct: 127 KICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAADLAKTGRSHWVAEEL 186

Query: 185 NFLMDRAELDLL---GWENVDIFSHS 207
             L D A  D+     W  +   ++S
Sbjct: 187 RTLTDPATYDIRPEEAWRRIKTRTNS 212


>gi|259416057|ref|ZP_05739977.1| ribonuclease D [Silicibacter sp. TrichCH4B]
 gi|259347496|gb|EEW59273.1| ribonuclease D [Silicibacter sp. TrichCH4B]
          Length = 385

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 8/200 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI--AAGQKNAPNLVGML 70
           E AA Y   + VDTE L       +LC++Q++  GDG  D + +   +   +   L  + 
Sbjct: 15  EEAANY-PYVTVDTEFLRERTYYSKLCLIQIAFRGDGKTDAVLVDPLSSDLSLEPLYELF 73

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            +E   K+FH  R D+ + +    V  +P+F T++A+ +   +  Q G +  ++++    
Sbjct: 74  RNEDVVKVFHAARQDLEIFWVDASVFPKPLFDTQVAAMVC-GFGEQVGYETLVRKICKQG 132

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           + K  + +DWS   LSD Q  YA +DV HL  +     ++L + GRS         L D 
Sbjct: 133 LDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLRKELDKTGRSHWVAEELQVLTDP 192

Query: 191 AELDLL---GWENVDIFSHS 207
           A  D+     W  V   ++S
Sbjct: 193 ATYDIQPREAWRRVKTRTNS 212


>gi|319405613|emb|CBI79236.1| Ribonuclease D [Bartonella sp. AR 15-3]
          Length = 383

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 2/165 (1%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A  A R  + + VDTE +       +LC++Q++  D T+ +I   A   N      +++D
Sbjct: 13  AIAALRKSNFVTVDTEFIRETTFWPQLCLIQVASSDVTI-LIDPMAQDINLQPFFDLMID 71

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           +K  K+FH  R DI ++++  GV   P+F T++A  +   + +       ++   G ++ 
Sbjct: 72  KKIVKVFHAARQDIEIIYHLGGVIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLD 130

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           K+ + +DWS   LS++QL YA +DV +L  + L   ++L+   R+
Sbjct: 131 KSSRFTDWSCRPLSEKQLLYALADVTYLREVYLVLKKQLEEKKRT 175


>gi|110679520|ref|YP_682527.1| ribonuclease D [Roseobacter denitrificans OCh 114]
 gi|109455636|gb|ABG31841.1| ribonuclease D [Roseobacter denitrificans OCh 114]
          Length = 387

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS-PG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           D + VDTE L       +LC++QL+ PG  D T  I+   A   +   L  +  D    K
Sbjct: 21  DYVTVDTEFLRERTYYSKLCLIQLAMPGEDDSTGCIVDPLAPGLSLEPLYALFRDTSVVK 80

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +FH  R D+ + +    V   P+F T++A+ +   +  Q G +  ++ +    + K  + 
Sbjct: 81  VFHAARQDLEIFYVDAEVFPEPLFDTQVAAMVC-GFGEQVGYETLVRRIAKKPLDKTSRF 139

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           +DWS   L+D Q++YA +DV HL  +     EKL+  GRS
Sbjct: 140 TDWSRRPLTDAQMKYALADVTHLREVYEFLAEKLEETGRS 179


>gi|297184397|gb|ADI20513.1| ribonuclease d [uncultured alpha proteobacterium EB080_L58F04]
          Length = 387

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 6/165 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG---TVDIIRIAAGQKNAPNLVGMLV 71
           AA+  D + +DTE L       +LC++QL+ PG G    V +  +A G K    L  +  
Sbjct: 16  AAKAFDYVTIDTEFLRERTYYSKLCLIQLAVPGKGDDHAVLVDPLAHGLK-LDALYALFE 74

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           DE   K+FH  R D+ +     GV  +P+F T++A+ +   +  Q G +  ++++   +I
Sbjct: 75  DETVVKVFHAARQDLEIFCVDAGVLPKPLFDTQVAA-MVCGFGEQVGYETLVRKITKNSI 133

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            K+ + +DWS   L++ Q  YA +DV HL  +      K+++ GR
Sbjct: 134 DKSSRFTDWSRRPLTEAQKSYALADVTHLRQVYEFLRAKIEKTGR 178


>gi|118340523|gb|ABK80573.1| putative ribonuclease D [uncultured marine Nitrospinaceae
           bacterium]
          Length = 386

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 14/185 (7%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +       R  ++Q+  G+    I  IA    +   L+ +L D  + K+FH
Sbjct: 20  DVLVVDTEFVRERTYFHRTGLIQVGGGEHFAAIDPIAL--PDMTPLLELLKDPTKVKVFH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ +L    G  + P+F T+IA+ L   +  Q      + + LG  I K++  +DW
Sbjct: 78  AARQDLEILVRFCGQVIPPIFDTQIAAALV-GWGTQISFAKIVYKALGKKIHKSETYTDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200
               LSD Q++YA  DV +L  +  +  E+L+++GR D      N            WE+
Sbjct: 137 CRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKKMGRLDWVQGEVN-----------AWED 185

Query: 201 VDIFS 205
              F+
Sbjct: 186 PKTFA 190


>gi|92117640|ref|YP_577369.1| ribonuclease D [Nitrobacter hamburgensis X14]
 gi|91800534|gb|ABE62909.1| ribonuclease D [Nitrobacter hamburgensis X14]
          Length = 396

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 5/182 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE L        LC+VQ++  D  V +  +A G    P    ++ +E+  K+FH  
Sbjct: 37  VTVDTEFLRETTYYPLLCVVQMASPDEAVVVDALAEGIDLKP-FFDLMSNERVLKVFHAA 95

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++++  G+   P+F T++A+ +   Y +       ++ + G    K  + +DWS 
Sbjct: 96  RQDIEIVWHQAGIIPHPIFDTQVAA-MVLGYGDSIAYDALVERVNGHRPDKTHRFTDWSR 154

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199
             L+ +QL+YA +DV HL  +       L++ GR D  +     L      D      WE
Sbjct: 155 RPLTKDQLEYAVADVTHLRDVFAALDADLKKRGRGDWVSEEMEVLTSPKTYDFHPERAWE 214

Query: 200 NV 201
            +
Sbjct: 215 RL 216


>gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
 gi|210159428|gb|EEA90399.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
          Length = 377

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+ A C  AR   AIA+DTE L       +LC+VQ++  D  V I  +     +   L  
Sbjct: 8   DLSAFCGRARCHVAIAIDTEFLRERTYHAKLCLVQVATPDECVVIDPLTIDDLSP--LAE 65

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--TRTYTNQHGLKDNLKEL 126
           ++ D    K+FH    D+ VL +T GV   P+F T++A+     R   + H L   +   
Sbjct: 66  LMADVDTLKVFHACSQDMEVLVHTLGVCPAPIFDTQVAAGFLGERAQCSYHNL---VHSF 122

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            G+++ K +  +DWS   LS +Q++YA  DV +L         KL  LGR+
Sbjct: 123 CGVSLPKTESLTDWSRRPLSPQQIEYAVDDVRYLIDAYRVIESKLHSLGRT 173


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 4/177 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTET GL P  +R+ ++Q++     V I+ +AA   +  + +  L++    K+F  G
Sbjct: 37  IGIDTETTGLDPLTERIRLIQIAAPQHPVIIVDLAALADSELSPLKALLNSSALKVFQNG 96

Query: 83  RFDIAVLFYTFGVRVR-PVFCTKIASRLTRT-YTNQHGLKDNLKELLGINISKAQQSSDW 140
           +FD  VL    G+R   P F   +AS++ R+     H L+    E LGI + K+ QSS++
Sbjct: 97  KFDWQVLEMA-GLRPSGPFFDVMLASQVLRSGLKKDHDLQSLTFEFLGIKLDKSLQSSNF 155

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
            A  LS  QL+YAA D   L  LR +   KL+  G  + A      +   A+++L G
Sbjct: 156 -AGKLSASQLEYAALDAAVLLKLRARLHSKLRSAGLLETAKIEFAAMPAVAQMELNG 211


>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
 gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
          Length = 374

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 4/141 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E   +   ++++C++Q +  D TV +  +AAG  +   L  +L D    KIFH  
Sbjct: 26  FAVDLEADSMHSYQEKVCLLQFTYHDTTVLLDPLAAG--DLAPLKPVLADSSIRKIFHAA 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +DI  L   F + +R +F T IAS+       + GL D L +   + + K  Q +DWS 
Sbjct: 84  DYDIRCLARDFDIEIRGLFDTMIASQFL--GEEKVGLADVLGKYFDVTLDKRFQRADWSK 141

Query: 143 DDLSDEQLQYAASDVVHLHAL 163
             LS E   YAA D  HL  L
Sbjct: 142 RPLSPEMCHYAAEDTRHLEKL 162


>gi|85702967|ref|ZP_01034071.1| ribonuclease D [Roseovarius sp. 217]
 gi|85671895|gb|EAQ26752.1| ribonuclease D [Roseovarius sp. 217]
          Length = 386

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG---TVDIIR 55
           M TI   E D+   CA AR    + VDTE L       +LC++QL+ PG G    V +  
Sbjct: 1   MKTITTTE-DLAEFCAMARTHSYVTVDTEFLRERTYYSKLCLLQLAVPGKGDDSAVLVDP 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           I     +   L  +  D    K+FH  R D+ + +   GV   P+F T++A+ +   +  
Sbjct: 60  IEGEDMSMEPLYELFRDTSVVKVFHAARQDLEIFYVDAGVIPDPMFDTQVAAMVC-GFGE 118

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  +K +    + K+ + +DWS   L+D Q  YA +DV HL  +     +KL   G
Sbjct: 119 QVGYETLVKRIAKQTVDKSSRFTDWSRRPLTDAQKTYALADVTHLRVVYEFLAKKLASSG 178

Query: 176 RSDLATSCCNFLMDRA 191
           R        + L D A
Sbjct: 179 RDKWVAEELSVLTDPA 194


>gi|84501108|ref|ZP_00999343.1| ribonuclease D [Oceanicola batsensis HTCC2597]
 gi|84391175|gb|EAQ03593.1| ribonuclease D [Oceanicola batsensis HTCC2597]
          Length = 385

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 91/180 (50%), Gaps = 6/180 (3%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG--DGTVDIIRI 56
           M TI   E D+ A C  A   D + VDTE L       +LC++Q++ PG  D    +I  
Sbjct: 1   MRTITTTE-DLAAFCNEAASCDYVTVDTEFLRERTYYSQLCLIQMAMPGEDDENAVLIDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            +G  +   L  +  ++   K+FH  R D+ + +   GV  +P+F T+IA+ +   +  Q
Sbjct: 60  LSGNLDLAPLYELFRNQAVVKVFHAARQDLEIFYVDAGVIPQPLFDTQIAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +K +    + K+ + +DWS   L++ Q +YA +DV HL  +     +KL+R  R
Sbjct: 119 VGYETLVKRIAKQQLDKSSRFTDWSRRPLTEAQKKYALADVTHLRKIYEYLADKLRRQKR 178


>gi|319407179|emb|CBI80818.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 383

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 92/190 (48%), Gaps = 5/190 (2%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            A R  + + VDTE +       +LC++Q++  D T+ +I       N      +++D+K
Sbjct: 15  AALRKSNFVTVDTEFIRETTFWPQLCLIQVASQDITI-LIDPMVQDINLQPFFDLMIDKK 73

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+FH  R DI ++++  G+   P+F T++A  +   + +       ++   G ++ K+
Sbjct: 74  VVKVFHAARQDIEIIYHLGGIIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLDKS 132

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
            + +DWS   LS++QL YA SDV +L  + L   ++L+   R+         L+     D
Sbjct: 133 SRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRTHWMHDEMTLLLTPTTYD 192

Query: 195 LL---GWENV 201
           +     W+ V
Sbjct: 193 IPENEAWKKV 202


>gi|222085490|ref|YP_002544020.1| ribonuclease D [Agrobacterium radiobacter K84]
 gi|221722938|gb|ACM26094.1| ribonuclease D [Agrobacterium radiobacter K84]
          Length = 381

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE L        LC++Q++     V +  +A G    P    ++ +    K+FH  
Sbjct: 21  ITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGLDLKP-FFELMANTAVMKVFHAA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++F    +   P+F T++A+ +   + +       +  +  I I K+ + +DWS 
Sbjct: 80  RQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSRIKNIQIDKSSRFTDWSR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             LS++QL YA +DV HL  + L   E+L+R GR+         L  R   DL
Sbjct: 139 RPLSEKQLDYALADVTHLRDVYLSLKEQLEREGRASWLLEEMAILEARETYDL 191


>gi|209964842|ref|YP_002297757.1| ribonuclease D, putative [Rhodospirillum centenum SW]
 gi|209958308|gb|ACI98944.1| ribonuclease D, putative [Rhodospirillum centenum SW]
          Length = 385

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 2/155 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC+VQ++  D    I  +A G    P L  +L D    K+FH  
Sbjct: 23  VTVDTEFMREKTYWPQLCLVQVAGPDEAAAIDPLAEGMDLTP-LFELLHDPGVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +  +  G    P+F T+IA+ +   + +  G +  + +L    I K+ + +DWS 
Sbjct: 82  RQDVEIFVHLTGAVPAPLFDTQIAA-MVCGFGDSVGYETLITKLTSARIDKSSRFTDWSQ 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
             L++ QL YA SDV HL     +   +L + GR 
Sbjct: 141 RPLTERQLSYALSDVTHLRPAYEKLRRRLAKTGRE 175


>gi|110633474|ref|YP_673682.1| ribonuclease D [Mesorhizobium sp. BNC1]
 gi|110284458|gb|ABG62517.1| ribonuclease D [Chelativorans sp. BNC1]
          Length = 392

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 14/180 (7%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++    T  +  +A G   AP    ++ +E+  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPELCLIQMAAPGVTALVDPLADGMDLAP-FFRLMGNEQVVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK------ELLGINISKA 134
             R DI +++   G+   P+F T++A+ +        G  D++        + G +I K 
Sbjct: 80  AARQDIEIIYNRGGLIPHPIFDTQVAAMVC-------GFGDSISYDQLVLRITGEHIDKT 132

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
            + +DW    LS++QL+YA +DV HL  +    T +LQR GR        + L  R   D
Sbjct: 133 SRFTDWRHRPLSEKQLRYALADVTHLIPVYAHLTTELQRGGREGWLKEEMDVLTARETYD 192


>gi|49475730|ref|YP_033771.1| ribonuclease D [Bartonella henselae str. Houston-1]
 gi|49238537|emb|CAF27773.1| Ribonuclease D [Bartonella henselae str. Houston-1]
          Length = 406

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 2/160 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R  D + +DTE +       +LC++QL+  D TV I  I+      P    ++V++K  K
Sbjct: 41  RNSDFVTIDTEFIRETTFWPQLCLIQLASPDTTVLIDPISQDIDLKP-FFDLMVNKKIVK 99

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +FH  R DI  +++  GV   P+F T+IA  +   + +       ++   G  + K+ + 
Sbjct: 100 VFHAARQDIETIYHLGGVIPSPLFDTQIAGSIC-GFGDSISYDQIVQRCTGYQLDKSSRF 158

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           +DWS   LS++QL YA +DV +L  + L   ++L++  R+
Sbjct: 159 TDWSFRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRT 198


>gi|46204778|ref|ZP_00049503.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 214

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 1/154 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC++Q++  DG   ++   A   +    + ++ DE   K+FH  
Sbjct: 23  VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKGLDLKPFLDLMADESTVKVFHSA 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++   G+   P F T++A+ +   Y +    +  + ++    I K+ + +DWS 
Sbjct: 83  RQDLEIIWLLGGLLPHPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             LSD QL YA SDV HL  +      +L R  R
Sbjct: 142 RPLSDAQLAYALSDVTHLVTIYQVLAAELVRTDR 175


>gi|332185190|ref|ZP_08386939.1| ribonuclease D [Sphingomonas sp. S17]
 gi|332014914|gb|EGI56970.1| ribonuclease D [Sphingomonas sp. S17]
          Length = 392

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 1/158 (0%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            D I VDTE +        LC++Q++       I   A G    P L  ++ +++  K+F
Sbjct: 23  ADFITVDTEFMRESTYWPELCLIQIADTQEAAAIDPKAPGLDMTPLLDLLVNNDEVLKVF 82

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H G  DI +++   G    P+F T+IA+ +      Q G  + +   LGI + K  + +D
Sbjct: 83  HAGGQDIEIIYNLTGKTPHPLFDTQIAA-MALGQGEQIGYSNLVDSWLGIQVDKGARFTD 141

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           WS   L   Q+ YA  DV HL  +  +  E+L++ GR 
Sbjct: 142 WSRRPLDQRQVDYAIGDVTHLSDIFPRMLERLRKTGRG 179


>gi|149186862|ref|ZP_01865172.1| ribonuclease D [Erythrobacter sp. SD-21]
 gi|148829529|gb|EDL47970.1| ribonuclease D [Erythrobacter sp. SD-21]
          Length = 411

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 3/172 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIF 79
           D + VDTE +        LC+VQ++  +    I  +A G    P L  +L D E+  K+F
Sbjct: 25  DFVTVDTEFMRENTYWPELCLVQIANEEEAAAIDPLADGIDLQP-LWDLLCDNEEVLKVF 83

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H G  D+ +++   G    P+F T+IA  +  +   Q G  + ++  +GI + K  + +D
Sbjct: 84  HAGGQDVEIVYNFTGKTPHPIFDTQIAM-MAISQNEQIGYANLVESWMGITVDKGARFTD 142

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           W    L+D Q++YA  DV HL  +     +KL + GR     +  + L D A
Sbjct: 143 WGRRPLTDRQIEYAIGDVTHLSKIFPMILKKLIKTGRGVWLDAEMDKLADPA 194


>gi|163759179|ref|ZP_02166265.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
 gi|162283583|gb|EDQ33868.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
          Length = 383

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE L        LC++Q++  D    +  +A G    P    ++ D    K+FH  
Sbjct: 23  VTVDTEFLRETTYWPELCLIQMAGPDDEGIVDPLAEGIDLKP-FFELMADTSVVKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++ +   +   P+F T++A+ +   +         +  + G +I K+ + +DWS 
Sbjct: 82  RQDIEIMVHRGDLVPHPIFDTQVAAMVC-GFGESISYDQLVSRITGAHIDKSSRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             LSD+QL YA +DV HL  + L+   +L+  GRS         L  RA  ++
Sbjct: 141 RPLSDKQLDYALADVTHLRDVYLELLSRLKAEGRSHWVADEMAVLESRATYEI 193


>gi|159044436|ref|YP_001533230.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12]
 gi|157912196|gb|ABV93629.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12]
          Length = 385

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 6/173 (3%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS-PGDG---TVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           D + VDTE L       +LC+VQL+ PG+G    V +  +A G   AP ++ +  +    
Sbjct: 21  DYVTVDTEFLRERTYYAKLCLVQLAYPGEGEETAVLVDPLAEGMSLAP-MLDLFRNPDVV 79

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH  R D+ + F   GV   P+F T++A+ +   +  Q G +  ++++   ++ K  +
Sbjct: 80  KVFHAARQDLEIFFVEHGVFPEPLFDTQVAAMVC-GFGEQVGYETLVRKIARESLDKTSR 138

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            +DWS   LS  Q +YA +DV HL  +       + + GR          L+D
Sbjct: 139 FTDWSHRPLSKAQKKYALADVTHLRVIYEYLAAAIDKTGRRAWVEEELQGLLD 191


>gi|258541225|ref|YP_003186658.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632303|dbj|BAH98278.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635360|dbj|BAI01329.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638415|dbj|BAI04377.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256641469|dbj|BAI07424.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256644524|dbj|BAI10472.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256647579|dbj|BAI13520.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256650632|dbj|BAI16566.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653623|dbj|BAI19550.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 402

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 2/169 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +        LC+VQ+   +  V I  +A G    P L  + VD    K+FH  
Sbjct: 34  VTVDTEFMREQTYWPELCLVQIGATNDVVLIDALADGIDLTP-LKNLFVDTAVLKVFHAA 92

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +  + F     P+F T++A+ +   + +Q G    +  L G  I K+ + +DWS 
Sbjct: 93  RQDLEIFLHLFDALPTPLFDTQVAA-MVAGFGDQVGYDSLVGSLTGHMIDKSHRFTDWSV 151

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             LS  QL YAA DV  L  +  +  +KL++  R D   +    L D A
Sbjct: 152 RPLSPAQLTYAAGDVTWLRLVYERLVKKLEQEQRLDWVAAEMAELEDPA 200


>gi|227821514|ref|YP_002825484.1| ribonuclease D [Sinorhizobium fredii NGR234]
 gi|227340513|gb|ACP24731.1| ribonuclease D [Sinorhizobium fredii NGR234]
          Length = 383

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE L        LC++Q++  D  V +  +A G   AP    ++ +    K+FH  
Sbjct: 21  ITIDTEFLRETTFWPELCLIQMAGPDTAVIVDPMAPGIDLAP-FFALMANADVVKVFHAA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++ +   +   P+F T++A+ +   + +       +  +  + I K+ + +DWS 
Sbjct: 80  RQDIEIIHHLGNLIPHPLFDTQVAAMVC-GFGDSVSYDQLVSRIKNVQIDKSSRFTDWSR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             L+D+QL YA +DV HL  +      +L+R GRS         L  R   DL
Sbjct: 139 RPLTDKQLDYALADVTHLRDVYHYLKAELEREGRSSWLAEEMAILESRETYDL 191


>gi|319408646|emb|CBI82301.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 383

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 5/184 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +       +LC++QL+  + T+ +I       +  +   ++VDEK  K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPQLCLIQLASPNVTM-LIDPMVPDIDLQSFFDLMVDEKIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI  +++  G+   P+F T+IA  +   + +       ++   G ++ K+ + +DW
Sbjct: 80  AARQDIETIYHLGGIIPYPLFDTQIAGSIC-GFGDSISYDQIVQRCTGHHLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---G 197
           S   LS++QL YA +DV +L  + L   +KL++  R+         L+     D+     
Sbjct: 139 SHRPLSEKQLLYALADVTYLRDVYLSLKKKLEKNKRTHWMDDELEILLTPTTYDIPEEDA 198

Query: 198 WENV 201
           W+ V
Sbjct: 199 WKKV 202


>gi|315500006|ref|YP_004088809.1| ribonuclease d [Asticcacaulis excentricus CB 48]
 gi|315418018|gb|ADU14658.1| ribonuclease D [Asticcacaulis excentricus CB 48]
          Length = 382

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I VDTE +       +LC++Q +  +    II   +   +    + +L D    K+FH  
Sbjct: 23  ITVDTEFMRETTYWPKLCLIQAA-SEEHAGIIDPLSPDLDLKPFLDLLTDPAILKVFHAC 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + F   G    PVF T++A+ +   + +Q      +++++ ++I K  + +DWS 
Sbjct: 82  RQDVEI-FNNLGAMPAPVFDTQVAA-MAAGFGDQVAYDSLVRQVIKVDIDKGSRFTDWSR 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             LS++QLQYA  DV HL  L  +  EKL+   R
Sbjct: 140 RPLSEQQLQYALGDVTHLARLYPKLVEKLKAQNR 173


>gi|163746426|ref|ZP_02153784.1| ribonuclease D [Oceanibulbus indolifex HEL-45]
 gi|161380311|gb|EDQ04722.1| ribonuclease D [Oceanibulbus indolifex HEL-45]
          Length = 385

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAPNLVGM 69
           E AARY D + VDTE L       +LC+VQL+ PG      V +  +A G    P L  +
Sbjct: 15  EEAARY-DYVTVDTEFLRERTYYSKLCLVQLAMPGTDDSNAVLVDPLAEGISLEP-LYTL 72

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             D    K+FH  R D+ + F    V   P+F T++A+ +   +  Q G +  ++++   
Sbjct: 73  FRDTSVVKVFHAARQDLEIFFVDAEVFPEPLFDTQVAAMVC-GFGEQVGYETLVRKIAHQ 131

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            + K  + +DWS   L+D Q  YA +DV HL  +      KL+  GR+
Sbjct: 132 ALDKTSRFTDWSRRPLTDAQKTYALADVTHLRQIYEFLARKLEETGRA 179


>gi|170742646|ref|YP_001771301.1| ribonuclease D [Methylobacterium sp. 4-46]
 gi|168196920|gb|ACA18867.1| ribonuclease D [Methylobacterium sp. 4-46]
          Length = 394

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 3/139 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDII-RIAAGQKNAPNLVGMLVDEKREKIFHY 81
           + VDTE +       +LC++Q++  DGT  ++  +A G   AP    ++ DE   K+FH 
Sbjct: 23  VTVDTEFMRETTYYPKLCLIQIAAPDGTTALVDPLAPGIDLAP-FFALMGDEGVLKVFHS 81

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            R D+ +++   G+  +P F T++A+ +   Y +    +  + ++    + K+ + +DWS
Sbjct: 82  ARQDLEIIWLQGGLLPQPFFDTQVAAMVC-GYGDSVSYEQLVNDVAKAKVDKSSRFTDWS 140

Query: 142 ADDLSDEQLQYAASDVVHL 160
              LS+ QL YA SDV HL
Sbjct: 141 RRPLSEAQLTYALSDVTHL 159


>gi|319898851|ref|YP_004158944.1| Ribonuclease D [Bartonella clarridgeiae 73]
 gi|319402815|emb|CBI76366.1| Ribonuclease D [Bartonella clarridgeiae 73]
          Length = 385

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            A R  + + VDTE +       +LC++Q++  D T  +I   A   N      +++D+K
Sbjct: 15  AALRNSNFVTVDTEFIRETTFWPQLCLIQVASPDITT-LIDPMAQDINLQPFFDLMIDKK 73

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+FH  R DI  +++  GV   P+F T++A  +   + +       ++   G ++ K+
Sbjct: 74  VVKVFHAARQDIETIYHLGGVIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLDKS 132

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            + +DWS   LS++QL YA +DV +L  + L   ++L++  R+
Sbjct: 133 SRFTDWSCRPLSEKQLLYALADVTYLRDVYLTLKKQLEKKKRT 175


>gi|261868337|ref|YP_003256259.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413669|gb|ACX83040.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 385

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AAR   A+A+DTE + +     +L ++Q+  GD  V +I     Q  +P  + +L D   
Sbjct: 29  AARQQSAVALDTEFVRVRTLYPKLGLIQMYFGD-RVALIDPLPIQDFSP-FIKLLADTNL 86

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V  + F    RP+  T++ +     +    G    ++    I I K  
Sbjct: 87  VKILHACSEDLDVFQHYFQQLPRPMCDTQVMAHFL-GFAGSTGFATLVQHYFQIEIDKGA 145

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             +DW A  LSD QLQYAA+DV +L  L  Q  ++L +     +  + C FL+++
Sbjct: 146 SRTDWLARPLSDTQLQYAAADVWYLLPLYEQMQQQLTQTEWQSVVENECEFLLNK 200


>gi|220924978|ref|YP_002500280.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
 gi|219949585|gb|ACL59977.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
          Length = 389

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC++Q++  DG+  ++   A   +      ++ DE+  K+FH  
Sbjct: 23  VTVDTEFMRETTYYPKLCLIQIAAPDGSTALVDPLAPAIDLTPFFALMGDERVLKVFHSA 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++   G+  +P F T++A+ +   Y +    +  + ++    I K+ + +DWS 
Sbjct: 83  RQDLEIIWLQGGLLPQPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKAKIDKSSRFTDWSR 141

Query: 143 DDLSDEQLQYAASDVVHL 160
             LS+ QL YA SDV HL
Sbjct: 142 RPLSEAQLSYALSDVTHL 159


>gi|307825065|ref|ZP_07655286.1| ribonuclease D [Methylobacter tundripaludum SV96]
 gi|307733813|gb|EFO04669.1| ribonuclease D [Methylobacter tundripaludum SV96]
          Length = 389

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE L       + C++Q++  +    I  IA    +   L   +      K+FH  
Sbjct: 27  LALDTEFLREKTYYPKFCLLQIATPEWVACIDPIALPSLDI--LFEAIYSPSIVKVFHSC 84

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +   G    P+F T+IA+ L   +    G    +  LL +N++KA   +DWS 
Sbjct: 85  RQDLEIFYQLTGKLPEPLFDTQIAAPLL-GFQENPGYAMLVSSLLNVNLNKAHTRADWSK 143

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L D ++QYAA DV++L  +     +KL  LGR++
Sbjct: 144 RPLIDAEIQYAADDVIYLCKIYQMMLQKLAELGRAE 179


>gi|163735131|ref|ZP_02142567.1| ribonuclease D [Roseobacter litoralis Och 149]
 gi|161391589|gb|EDQ15922.1| ribonuclease D [Roseobacter litoralis Och 149]
          Length = 387

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS-PG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           D + VDTE L       +LC++QL+ PG  D T  I+       +   L  +  D    K
Sbjct: 21  DYVTVDTEFLRERTYYSKLCLIQLAMPGEDDSTGCIVDPLVPGLSLEPLYALFRDTSVVK 80

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +FH  R D+ + +    V   P+F T++A+ +   +  Q G +  ++ +    + K  + 
Sbjct: 81  VFHAARQDLEIFYVDAEVFPEPLFDTQVAAMVC-GFGEQVGYETLVRRIAKQPLDKTSRF 139

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           +DWS   L+D Q++YA +DV HL  +     EKL+  GRS
Sbjct: 140 TDWSRRPLTDAQMKYALADVTHLRDVYEFLAEKLEETGRS 179


>gi|188533676|ref|YP_001907473.1| ribonuclease D [Erwinia tasmaniensis Et1/99]
 gi|188028718|emb|CAO96580.1| Ribonuclease D [Erwinia tasmaniensis Et1/99]
          Length = 373

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR V A+A+DTE +       RL ++QL  G+ T+ +I         P    +L D+K  
Sbjct: 19  ARQVPALALDTEFVRTRTYYPRLGLIQLYDGE-TISLIDPLPITDWTP-FSELLQDQKVI 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V  + FGV  +P+  T+I +  +    +  G    ++   GI + K++ 
Sbjct: 77  KYLHAGSEDLEVFCHEFGVLPQPMIDTQILAAFSGRPLS-CGFATVVESFTGIALDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q QYAA+DV +L  +  +   + +  G+   A   C  L  R
Sbjct: 136 RTDWLARPLSEKQCQYAAADVFYLLPIAGKLVAEAESAGQMAAALDECRLLCQR 189


>gi|254443317|ref|ZP_05056793.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257625|gb|EDY81933.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 370

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG---QKNAPNLVGMLVDEKREKIF 79
           IA+D+E   L     +LC++QL   DGT+ ++ + A     +    L G+ +      I 
Sbjct: 28  IALDSEADNLHHFETKLCLLQLR-FDGTIYLLDVTADLDLDRFWEILSGLHL------IM 80

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H   FD+ +     G   + +F + +AS+L      + GL   L+E  G+ I K  Q SD
Sbjct: 81  HGSDFDLRLFEEFCGFEAKSLFDSMLASQLLGI--KRIGLAALLEENFGVKIPKDSQKSD 138

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           WS   L+ + L+YAA+DV++LH LR +   ++  LGR +     C+
Sbjct: 139 WSQRPLTPKMLKYAATDVLYLHELRDKLMARIDELGRGEWLKQRCD 184


>gi|217976404|ref|YP_002360551.1| ribonuclease D [Methylocella silvestris BL2]
 gi|217501780|gb|ACK49189.1| ribonuclease D [Methylocella silvestris BL2]
          Length = 405

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE L       +LC+VQL+  D  V +  +A+G   AP L  ++ D    K+FH  
Sbjct: 29  VTVDTEFLRETTFWPKLCVVQLASADEAVAVDALASGLDLAP-LFELMADPAVVKVFHAA 87

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++    +   P+F T++A+ +   + +Q    D ++ +  +++ K+ + +DWS 
Sbjct: 88  RQDLEIVWNLAKIIPAPLFDTQVAAMVC-GFGDQVSYGDLVQTVCKVSLDKSSRFTDWSR 146

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L   Q+ YA +DV +L  +     +KL+  GR
Sbjct: 147 RPLLPAQVDYAIADVTYLRDIYAILQDKLKETGR 180


>gi|284006971|emb|CBA72245.1| ribonuclease D [Arsenophonus nasoniae]
          Length = 386

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 8/181 (4%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73
           AA     IA+DTE + +     +L ++QL  G+    +D I I     N      +L D 
Sbjct: 30  AASKASKIALDTEFVRVKTYYPQLSLIQLYDGEQLSLIDPIAIT----NMEPFKNLLTDG 85

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K  KI H G  DI V F+      +P+  T+I +     +    G    + + L I + K
Sbjct: 86  KVTKILHAGSEDIEVFFHHLACVPQPMLDTQIMAAFV-GHPISSGFASLVNKYLTIALDK 144

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT-SCCNFLMDRAE 192
           ++  +DW    LSD+Q QYAA+DV  L  L  +  + + +LG     T  C   L+ R E
Sbjct: 145 SESRTDWLVRPLSDKQCQYAAADVFFLLPLAEKLQQLVDKLGYLPAVTDECQRILLRRQE 204

Query: 193 L 193
           +
Sbjct: 205 I 205


>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
 gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
          Length = 382

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLS-PGDG-TVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           V  +AVD E   L    +++C++Q+   GD   +D + ++    +  +L     D    K
Sbjct: 28  VPVVAVDLEADSLHHFTEKVCLIQIGVNGDAFLIDPLALS----DLSSLKPFFADPGVIK 83

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H   +D+  L+  FG+ +  +F ++IASR     +   GL D +    G+ + K  + 
Sbjct: 84  VLHGADYDVRSLYRDFGITITGLFDSEIASRFLGVQST--GLNDVVNRRFGVTMDKGCRK 141

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            DW+   L ++ L YAA DV +L  L  Q   +LQ++GR++     C  L
Sbjct: 142 QDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQMGRAEWVAEECELL 191


>gi|182412681|ref|YP_001817747.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
 gi|177839895|gb|ACB74147.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
          Length = 391

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 14/177 (7%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGM 69
           P   A   VD +A+DTE   +   R R+C++Q   G     VD++        AP     
Sbjct: 36  PLLAALDRVDEVALDTEADNMFHYRTRVCLLQFLVGREIFLVDVL--------APLPFEG 87

Query: 70  LVDEKREK--IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           L     EK  I H   FD+ +L      R + +F T +A++L      + GL   L++  
Sbjct: 88  LWARLAEKNLIMHGSDFDLRLLHDFCRFRPKSIFDTMLAAQLINR--PRIGLASLLEDHF 145

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           G+ +SK  Q ++WS   L+ + L YAA DV HL ALR   T +L +LGR +     C
Sbjct: 146 GVKLSKESQKANWSKRPLTKKMLDYAALDVFHLPALRDILTRELTKLGRIEWLRQQC 202


>gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
           13280]
 gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
           13280]
          Length = 377

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 8/171 (4%)

Query: 10  DIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+ A C  AR   AIA+DTE L       +LC+VQ++  D  V I  +A        L  
Sbjct: 8   DLTAFCNRARAFSAIAIDTEFLREKTYHAKLCLVQVATPDECVVIDPLAIDDLGP--LAE 65

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--TRTYTNQHGLKDNLKEL 126
           ++ D    K+FH    D+ VL +  G    P+F T++A+     R   + H L   +   
Sbjct: 66  LMTDVDTLKVFHACSQDMEVLCHALGSVPAPIFDTQVAAGFLGERAQCSYHNL---VSTF 122

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            G+++ K +  +DWS   LS +Q++YA  DV +L         KL  LGR+
Sbjct: 123 CGVSLPKTESLTDWSRRPLSPKQIEYALDDVRYLIDAYRVIESKLHSLGRT 173


>gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
 gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
          Length = 409

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 4/154 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A D E   L    +++C++Q+S    T  I  +A    +   L  +L +    K+FH  
Sbjct: 58  LAFDLEADSLHHYTEKVCLIQVSTNSETALIDPLAP--LDLSPLAPILANPAVRKVFHGA 115

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +D+  L+  FG  VR +F T IAS+       + GL   LK+  G+ + K  Q +DWS 
Sbjct: 116 DYDMRSLYRDFGFEVRNLFDTMIASQFLGE--KEVGLAAALKKRFGVELDKKYQKADWSK 173

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
              S + ++YA  D   L  L LQ  ++L+  GR
Sbjct: 174 RPFSPQMIEYAMKDTSLLIKLYLQLEDELRAKGR 207


>gi|83311936|ref|YP_422200.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
 gi|82946777|dbj|BAE51641.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
          Length = 397

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC+VQ++  D    I  +A     AP L  ++ D    K+FH  
Sbjct: 23  VTVDTEFMREKTYWPQLCLVQVAGPDEARAIDPLAPDMDLAP-LFELMADTNVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +  +       P+F T+IA+ +   + +  G +    +L    I K+ + +DWS 
Sbjct: 82  RQDVEIFLHLADAIPTPIFDTQIAAMVC-GFGDSVGYETLASQLAKARIDKSMRFTDWSI 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             LS++Q+QYA +DV HL     +   K+++ GR
Sbjct: 141 RPLSEKQIQYALADVTHLRVAYEKLVRKVEKNGR 174


>gi|85708161|ref|ZP_01039227.1| ribonuclease D [Erythrobacter sp. NAP1]
 gi|85689695|gb|EAQ29698.1| ribonuclease D [Erythrobacter sp. NAP1]
          Length = 400

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 1/154 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTE +        LC+VQ++  +    I  +A G   +P L  +  +++  K+FH G
Sbjct: 26  VAVDTEFMRENTYWPELCLVQIANTEEAAAIDPLADGIDLSPLLELLTENDEVLKVFHAG 85

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ ++    G    P+F T+I S +  + + Q G  + +   L I + K  + +DWS 
Sbjct: 86  GQDVEIIVNMTGKTPFPIFDTQI-SMMAISQSEQIGYANLVDHWLNITVDKGARFTDWSR 144

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L+D Q++YA  DV HL  +  +  +KL +  R
Sbjct: 145 RPLTDRQIEYAIGDVTHLSKIFPKILKKLMKTER 178


>gi|83942499|ref|ZP_00954960.1| ribonuclease D [Sulfitobacter sp. EE-36]
 gi|83846592|gb|EAP84468.1| ribonuclease D [Sulfitobacter sp. EE-36]
          Length = 385

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 6/161 (3%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           D + VDTE L       +LC++QL+ PG      V +  ++ G    P L  +  D    
Sbjct: 21  DYVTVDTEFLRERTYYSKLCLIQLAMPGTDDSNAVLVDPLSEGLSLDP-LYTLFRDTSVV 79

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH  R D+ + +   GV   P+F T++A+ +   +  Q G +  ++++    + K  +
Sbjct: 80  KVFHAARQDLEIFYVDAGVFPEPLFDTQVAAMVC-GFGEQVGYETLVRKIAHQPLDKTSR 138

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            +DWS   LSD Q +YA +DV HL  +      KL++ GR+
Sbjct: 139 FTDWSRRPLSDAQAKYALADVTHLRQIYEFLARKLEQTGRA 179


>gi|294013278|ref|YP_003546738.1| ribonuclease D [Sphingobium japonicum UT26S]
 gi|292676608|dbj|BAI98126.1| ribonuclease D [Sphingobium japonicum UT26S]
          Length = 401

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 1/156 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVDTE +        LC+VQ++       I   A G   +P L  M+ +E   K+FH G
Sbjct: 39  IAVDTEFMRENSYWPDLCLVQVADEHEAAAIDPKAPGLDLSPLLDLMVDNEDVLKVFHAG 98

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ +++   G    P+F T+IA+ +      Q G  + +   LG+ + K  + +DW+ 
Sbjct: 99  GQDLEIIYNLTGKTPHPLFDTQIAA-MALGLGEQIGYGNLVDAWLGVQLDKGARFTDWAR 157

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L   Q+ YA  DV +L  +  +  E+L+R GR D
Sbjct: 158 RPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTGRGD 193


>gi|83953718|ref|ZP_00962439.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
 gi|83841663|gb|EAP80832.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
          Length = 385

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 10/183 (5%)

Query: 1   MTTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDII 54
           M TI     ++ A C  AA++ D + VDTE L       +LC++QL+ PG      V + 
Sbjct: 1   MKTI-TTTAELEAYCTEAAKH-DYVTVDTEFLRERTYYSKLCLIQLAMPGTDDSNAVLVD 58

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
            ++ G    P L  +  D    K+FH  R D+ + +   GV   P+F T++A+ +   + 
Sbjct: 59  PLSEGLSLDP-LYTLFRDTSVVKVFHAARQDLEIFYVDAGVFPEPLFDTQVAAMVC-GFG 116

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            Q G +  ++++    + K  + +DWS   LSD Q +YA +DV HL  +      KL++ 
Sbjct: 117 EQVGYETLVRKIAHQPLDKTSRFTDWSRRPLSDAQAKYALADVTHLRQIYEFLARKLEQT 176

Query: 175 GRS 177
           GR+
Sbjct: 177 GRA 179


>gi|83593408|ref|YP_427160.1| ribonuclease D [Rhodospirillum rubrum ATCC 11170]
 gi|83576322|gb|ABC22873.1| Ribonuclease D [Rhodospirillum rubrum ATCC 11170]
          Length = 386

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 2/155 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC++QL+ G      +   A   +   L  ++ +E   K+FH  
Sbjct: 23  VTVDTEFMREKTYWPKLCLIQLA-GTTEAHCVDPLAPDIDMAPLFALMANESVLKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +  +  G   +P+F T++A+ +   + +  G +  + +L    I K+ + +DW+ 
Sbjct: 82  RQDLEIFLHESGHLPKPIFDTQVAAMVC-GFGDSVGYETLVAKLAKARIDKSMRFTDWAR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
             L+D QL YAA DV HL  +  +  E L   GR+
Sbjct: 141 RPLNDRQLVYAAGDVTHLRVVYERLAETLAANGRT 175


>gi|73667317|ref|YP_303333.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394458|gb|AAZ68735.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 386

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 3/143 (2%)

Query: 23  IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           IA+DTE +        RLC++Q++ G     +I + A   +   L  +L ++   K+FH 
Sbjct: 24  IAIDTEFIRNSSEYYPRLCLMQVAYGREQF-VIDVLASDMDLSPLNSILYNKNIVKVFHD 82

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-AQQSSDW 140
            R DI  L   F     P+F T++A+     Y N  G    +++ LGI++ K + + S+W
Sbjct: 83  CRQDIDALLTKFPKIPNPIFDTQVAAMFCYCYENAVGYSRLVEQFLGISLDKLSLKRSNW 142

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
               LS +++QYA +DV++LH L
Sbjct: 143 MLRPLSPDKIQYALNDVIYLHEL 165


>gi|126735792|ref|ZP_01751537.1| ribonuclease D [Roseobacter sp. CCS2]
 gi|126714979|gb|EBA11845.1| ribonuclease D [Roseobacter sp. CCS2]
          Length = 385

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 8/196 (4%)

Query: 1   MTTIRVHEGDIPAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M TI   E D+ A C      A + VDTE L       +LC+VQL+     G   V +  
Sbjct: 1   MKTITTTE-DLAAFCQEAAKRAYVTVDTEFLRERTYYSKLCLVQLAYQDDSGADAVLLDP 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           +  G    P L  +  D    K+FH  R D+ + +   GV   P+F T++A+ +   +  
Sbjct: 60  LVDGLSLEP-LYDLFKDHGVVKVFHAARQDLEIFYVDAGVIPEPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  ++++   ++ K+ + +DWS   L+D Q +YA +DV HL  +    + +L + G
Sbjct: 118 QVGYETLVRKITKSDLDKSSRFTDWSRRPLTDAQAKYALADVTHLRDIYEHLSARLAKSG 177

Query: 176 RSDLATSCCNFLMDRA 191
           RS         L D A
Sbjct: 178 RSKWVAEEMAVLEDPA 193


>gi|307317748|ref|ZP_07597186.1| ribonuclease D [Sinorhizobium meliloti AK83]
 gi|306896510|gb|EFN27258.1| ribonuclease D [Sinorhizobium meliloti AK83]
          Length = 383

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE L        LC++Q++  +  V +  +A G   AP    ++ +    K+FH  
Sbjct: 21  ITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGIDLAP-FFALMSNPDVVKVFHAA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++ +   +   P+F T++A+ +   + +       +  +    I K+ + +DWS 
Sbjct: 80  RQDIEIIHHLGNLIPHPIFDTQVAA-MVCGFGDSVSYDQLVNRIKNEQIDKSSRFTDWSR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             L+D+QL YA +DV HL  +    T++L R GRS         L  R   DL
Sbjct: 139 RPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEEMAILESRETYDL 191


>gi|254474856|ref|ZP_05088242.1| ribonuclease D [Ruegeria sp. R11]
 gi|214029099|gb|EEB69934.1| ribonuclease D [Ruegeria sp. R11]
          Length = 385

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 9/192 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + VDTE L       +LC+VQL+ PG   +  V +  +A G    P L  +  +E   K+
Sbjct: 23  VTVDTEFLRERTYFSKLCLVQLAYPGKDNENAVLVDPLADGLSLEP-LYALFRNESVVKV 81

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH  R D+ + +    V   P+F T++A+ +   +  Q G +  +++++   + K  + +
Sbjct: 82  FHAARQDLEIFWVDAQVFPTPLFDTQVAAMVC-GFGEQVGYETLVRKIVKQGLDKTSRFT 140

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL-- 196
           DWS   LSD Q  YA +DV HL  +      +L+R  RS         L D A  ++   
Sbjct: 141 DWSRRPLSDAQKTYALADVTHLRQIYEHLAAELKRTERSHWVAEELQVLTDPATYEINPR 200

Query: 197 -GWENVDIFSHS 207
             W  V   ++S
Sbjct: 201 DAWRRVKTRTNS 212


>gi|15964944|ref|NP_385297.1| ribonuclease D protein [Sinorhizobium meliloti 1021]
 gi|307301014|ref|ZP_07580783.1| ribonuclease D [Sinorhizobium meliloti BL225C]
 gi|15074123|emb|CAC45770.1| Probable ribonuclease D [Sinorhizobium meliloti 1021]
 gi|306903969|gb|EFN34555.1| ribonuclease D [Sinorhizobium meliloti BL225C]
          Length = 383

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE L        LC++Q++  +  V +  +A G   AP    ++ +    K+FH  
Sbjct: 21  ITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGIDLAP-FFALMSNPDVVKVFHAA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++ +   +   P+F T++A+ +   + +       +  +    I K+ + +DWS 
Sbjct: 80  RQDIEIIHHLGNLIPHPIFDTQVAA-MVCGFGDSVSYDQLVNRIKNEQIDKSSRFTDWSR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             L+D+QL YA +DV HL  +    T++L R GRS         L  R   DL
Sbjct: 139 RPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEEMAILESRETYDL 191


>gi|16125948|ref|NP_420512.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|221234713|ref|YP_002517149.1| ribonuclease D [Caulobacter crescentus NA1000]
 gi|13423116|gb|AAK23680.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|220963885|gb|ACL95241.1| ribonuclease D [Caulobacter crescentus NA1000]
          Length = 389

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTE +       +LC++Q++       I  +A      P LV ++ DE+  K+FH  
Sbjct: 23  VAVDTEFMRETTYWPKLCLIQVASPTQEAVIDPLADNIDLEPLLV-VMRDERILKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + F       +P+F T++A  +   +  Q      ++++L I I K+ + +DW+ 
Sbjct: 82  RQDVEI-FNNLKAMPKPLFDTQVAG-MAAGFGEQIAYDALVRQMLRIEIDKSSRFTDWAR 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L+D QL YA +DV HL  L     E+L+  GR
Sbjct: 140 RPLTDAQLSYALADVTHLAKLFPILRERLETSGR 173


>gi|307295006|ref|ZP_07574848.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
 gi|306879480|gb|EFN10698.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
          Length = 388

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 1/156 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IA+DTE +        LC+VQ++       I   A G   +P L  M+ +E   K+FH G
Sbjct: 26  IAIDTEFMRENSYWPDLCLVQVADEHEAAAIDPKAPGLDLSPLLDLMVDNEDVLKVFHAG 85

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ +++   G    P+F T+IA+ +      Q G  + +   LG+ + K  + +DW+ 
Sbjct: 86  GQDLEIIYNLTGKTPHPLFDTQIAA-MALGLGEQIGYGNLVDAWLGVQLDKGARFTDWAR 144

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L   Q+ YA  DV +L  +  +  E+L+R GR D
Sbjct: 145 RPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTGRGD 180


>gi|84687040|ref|ZP_01014923.1| ribonuclease D [Maritimibacter alkaliphilus HTCC2654]
 gi|84665014|gb|EAQ11495.1| ribonuclease D [Rhodobacterales bacterium HTCC2654]
          Length = 387

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 7/172 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRI---AAGQKNAPNLVGMLVDEKREK 77
           + VDTE L       +LC+VQL+    D  VD + +   A G    P L  +  DE   K
Sbjct: 23  VTVDTEFLRERTYYSKLCLVQLAVMGDDDEVDAVLVDPLADGLSLEP-LYELFRDEGVVK 81

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +FH  R D+ + +   G+   P+F T++A+ +   + +Q G +  ++++    + K+ + 
Sbjct: 82  VFHAARQDLEIFYVDAGLIPSPLFDTQVAAMVC-GFGDQAGYETLVRKIAKAQLDKSSRF 140

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +DWS   L+D Q +YA  DV HL  +      +L+  GR+       + L D
Sbjct: 141 TDWSRRPLTDAQKKYAIGDVTHLRVIYEFLKAQLEETGRAKWVKEELSVLTD 192


>gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2]
 gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2]
          Length = 381

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 4/165 (2%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           AIAVD E   +   ++++C++Q S     + +  +A   K+   L  +       KIFH 
Sbjct: 29  AIAVDLEADSMFHYQEKVCLLQFSTPSKNILVDPLAV--KDLSPLAPIFKSFGICKIFHG 86

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
             +DI  L+  F + V  +F T+IA+R         GL   L+  L I + K  Q  DWS
Sbjct: 87  ADYDIRSLYRDFKIEVNALFDTQIAARFLGL--TDIGLASLLQGKLNITLKKKYQKKDWS 144

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
              L    LQYA  D  HL  L     E+L + GR       C  
Sbjct: 145 QRPLPAPMLQYAVHDTCHLIPLAQNLREELVKTGRLPFVEEECQL 189


>gi|94497624|ref|ZP_01304192.1| ribonuclease D [Sphingomonas sp. SKA58]
 gi|94422841|gb|EAT07874.1| ribonuclease D [Sphingomonas sp. SKA58]
          Length = 412

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 14/191 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIFHY 81
           +AVDTE +        LC+VQ++       I   A G    P L+ +LVD E   K+FH 
Sbjct: 50  VAVDTEFMRENSYWPDLCLVQVADSHEAAAIDPKAPGIDLTP-LLNLLVDNEDVLKVFHA 108

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
           G  DI ++    G    P+F T+IA+ +   +  Q G  + +   LG+ + K  + +DW+
Sbjct: 109 GGQDIEIVHNLTGKAPHPMFDTQIAA-MALGFGEQIGYGNLVDAWLGVQLDKGARFTDWA 167

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-------ATSCCNFLMDRAELD 194
              L   Q+ YA  DV +L  +  +  E+L++ GR D         ++  N+  D A+  
Sbjct: 168 RRPLDKRQIDYAIGDVTYLIKIFPKMLEELKKTGRGDWLDQEMERISNPSNYENDPAD-- 225

Query: 195 LLGWENVDIFS 205
              W+ V I S
Sbjct: 226 --AWKRVRIAS 234


>gi|27379246|ref|NP_770775.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
 gi|27352397|dbj|BAC49400.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
          Length = 382

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 5/172 (2%)

Query: 9   GDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
            D+ A C+  A++   I VDTE L        LC+VQ++  +  + I  +A G    P  
Sbjct: 8   ADLAAACSRLAKH-PVITVDTEFLRETTYYPLLCVVQMASPEEAIVIDTLAVGIDLKP-F 65

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             ++ +E   K+FH  R DI ++++   +   PVF T++A+ +   Y +       ++++
Sbjct: 66  FELMGNEAVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAA-MVLGYGDSIAYDQLVEKV 124

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            G    K  + +DWS   L+ EQ+ YA SDV HL  +       L++  RS+
Sbjct: 125 TGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSE 176


>gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
 gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
          Length = 388

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVD E   +   +++ C++Q++     ++ I       +   L  +L +++ +KIFH  
Sbjct: 37  IAVDLEADSMFHYQEKACLLQIT--SNGLNYIVDPLCDCDVKALAPILENDEIQKIFHGA 94

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +D+  LF  FG+ +  +F T++A+R       Q GL   L+   G+ + K  Q  +WS 
Sbjct: 95  DYDVRCLFRDFGIELHNLFDTQVAARFLGE--PQTGLAPLLESRFGVQLEKKYQKKNWSL 152

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
             L  E + YAA+D VHL    L+  E L++
Sbjct: 153 RPLPPEMMAYAANDTVHL----LELAEILKK 179


>gi|329114834|ref|ZP_08243590.1| Ribonuclease D [Acetobacter pomorum DM001]
 gi|326695731|gb|EGE47416.1| Ribonuclease D [Acetobacter pomorum DM001]
          Length = 406

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 2/169 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +        LC+VQ+      V I  +A G    P L  +  D    K+FH  
Sbjct: 38  VTVDTEFMREQTYWPELCLVQIGATHDIVLIDALAEGIDLTP-LKNLFADTAVLKVFHAA 96

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +  + F     P+F T++A+ +   + +Q G    +  L G  I K+ + +DWS 
Sbjct: 97  RQDLEIFLHLFDALPTPLFDTQVAA-MVAGFGDQVGYDSLVGSLTGHMIDKSHRFTDWSV 155

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             LS  QL YAA DV  L  +  +  +KL++  R D   +    L D A
Sbjct: 156 RPLSPAQLTYAAGDVTWLRLVYERLVKKLEQEQRLDWVAAEMAELEDPA 204


>gi|254562078|ref|YP_003069173.1| ribonuclease D [Methylobacterium extorquens DM4]
 gi|254269356|emb|CAX25322.1| Ribonuclease D (RNase D) [Methylobacterium extorquens DM4]
          Length = 384

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC++Q++  DG   ++   A   +      ++ DE   K+FH  
Sbjct: 23  VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSA 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++   G+  +P F T++A+ +   Y +    +  + ++    I K+ + +DWS 
Sbjct: 83  RQDLEIIWLLGGLLPQPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141

Query: 143 DDLSDEQLQYAASDVVHL 160
             LS+ QL YA SDV HL
Sbjct: 142 RPLSEAQLAYALSDVTHL 159


>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
 gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
          Length = 380

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS-PG-DGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + IAVDTE+ GL   ++++C++Q S PG D  VD +       N   L  +  +   EK+
Sbjct: 29  EQIAVDTESNGLHAYQEQICLIQFSVPGADYLVDPL----ASVNLSGLNEIFSNPGIEKV 84

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH   +DI  L   FG     +F T IA+R+     ++ GL   L+E  G+ + K  Q +
Sbjct: 85  FHAAEYDILCLKRDFGFTFTHLFDTMIAARILGR--SEVGLAALLEEHFGVTLDKRYQRA 142

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +W+   L    L YA  D  +L  LR    ++L   G + LA
Sbjct: 143 NWARRPLPPAMLNYARLDTHYLIDLRNHLAKELAERGLTALA 184


>gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626]
 gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626]
          Length = 376

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 7/162 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           A +V  +AVDTE L       +LC+VQ+S G+    +D + I     +   LV +  D+K
Sbjct: 16  AAHVPVLAVDTEFLREKTYYPKLCLVQVSTGEEIAAIDPLSI----DDLSPLVRLFEDQK 71

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+ H    D+ VL Y       PVF T++A+        Q      ++  +G+++ K 
Sbjct: 72  IVKVIHACSQDLEVLLYGMHCACAPVFDTQLAAAFL-GMRQQASYASVVEHYMGVHLPKT 130

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           +  +DWS   L  EQL YA  DV +L  +     E+L +  R
Sbjct: 131 ESLTDWSRRPLDPEQLVYAEDDVRYLPDIYRCMYERLMKTNR 172


>gi|163852332|ref|YP_001640375.1| ribonuclease D [Methylobacterium extorquens PA1]
 gi|163663937|gb|ABY31304.1| ribonuclease D [Methylobacterium extorquens PA1]
          Length = 384

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC++Q++  DG   ++   A   +      ++ DE   K+FH  
Sbjct: 23  VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSA 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++   G+  +P F T++A+ +   Y +    +  + ++    I K+ + +DWS 
Sbjct: 83  RQDLEIIWLLGGLLPQPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141

Query: 143 DDLSDEQLQYAASDVVHL 160
             LS+ QL YA SDV HL
Sbjct: 142 RPLSEAQLAYALSDVTHL 159


>gi|262276193|ref|ZP_06054002.1| ribonuclease D [Grimontia hollisae CIP 101886]
 gi|262220001|gb|EEY71317.1| ribonuclease D [Grimontia hollisae CIP 101886]
          Length = 405

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 11/178 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR V A+ +DTE +       RL ++QL  G+ T+ +I        +P L G+L DE   
Sbjct: 50  ARQVPAVMLDTEFVRTRTLYPRLGLIQLYDGE-TLSLIDPIELDDLSP-LWGLLTDESVV 107

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132
           K+ H    D+ V ++  G    P+  T+I +         HGL       ++E L + + 
Sbjct: 108 KVLHACSEDLEVFYHYAGAMPTPMVDTQIMAAFL-----GHGLSTGFASLVEEYLVVTLD 162

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           K +  +DW A  LS++QL+YAA+DV +L  L  + ++++   G  +     C  +  +
Sbjct: 163 KGEARTDWCARPLSEKQLEYAAADVYYLLPLYNELSKRVSAAGWDEAVKQECALMASK 220


>gi|240139668|ref|YP_002964145.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1]
 gi|240009642|gb|ACS40868.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1]
          Length = 384

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC++Q++  DG   ++   A   +      ++ DE   K+FH  
Sbjct: 23  VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSA 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++   G+  +P F T++A+ +   Y +    +  + ++    I K+ + +DWS 
Sbjct: 83  RQDLEIIWLLGGLLPQPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141

Query: 143 DDLSDEQLQYAASDVVHL 160
             LS+ QL YA SDV HL
Sbjct: 142 RPLSEAQLAYALSDVTHL 159


>gi|218531091|ref|YP_002421907.1| ribonuclease D [Methylobacterium chloromethanicum CM4]
 gi|218523394|gb|ACK83979.1| ribonuclease D [Methylobacterium chloromethanicum CM4]
          Length = 384

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC++Q++  DG   ++   A   +      ++ DE   K+FH  
Sbjct: 23  VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSA 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++   G+  +P F T++A+ +   Y +    +  + ++    I K+ + +DWS 
Sbjct: 83  RQDLEIIWLLGGLLPQPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141

Query: 143 DDLSDEQLQYAASDVVHL 160
             LS+ QL YA SDV HL
Sbjct: 142 RPLSEAQLAYALSDVTHL 159


>gi|260433597|ref|ZP_05787568.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417425|gb|EEX10684.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
          Length = 424

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + VDTE L       +LC++Q++ P    D  V +  +A G    P L  +  +E   K+
Sbjct: 62  VTVDTEFLRERTYYSKLCLIQMAVPSEDEDSAVLVDPLADGLSLDP-LYELFQNEDVVKV 120

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH  R D+ + +   G+  +P+F T++A+ +   +  Q G +  ++++    + K  + +
Sbjct: 121 FHAARQDLEIFWVEAGIFPKPLFDTQVAA-MVCGFGEQVGYETLVRKICKQGLDKTSRFT 179

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           DWS   LSD Q  YA +DV HL  +      +L++ GRS
Sbjct: 180 DWSRRPLSDAQKTYALADVTHLRQIYEYLAAELEKTGRS 218


>gi|328543996|ref|YP_004304105.1| ribonuclease d protein [polymorphum gilvum SL003B-26A1]
 gi|326413740|gb|ADZ70803.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
          Length = 394

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 77/141 (54%), Gaps = 2/141 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE L       +LC++Q++  D  V +  +A G   AP L  ++ +E+  K+FH
Sbjct: 21  DYVTVDTEFLRETTFWPKLCVIQMAGPDDAVIVDALADGLDLAPFL-DLMRNERVTKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++++  G+   P+F T++A+ +   + +       ++ + G  I K+ + +DW
Sbjct: 80  AARQDIEIVYHLGGLIPHPLFDTQVAAMVC-GFGDSISYDQLVQRITGARIDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLH 161
           +   L+ +QL YA +DV +L 
Sbjct: 139 ARRPLTQKQLDYALADVTYLR 159


>gi|260426693|ref|ZP_05780672.1| ribonuclease D [Citreicella sp. SE45]
 gi|260421185|gb|EEX14436.1| ribonuclease D [Citreicella sp. SE45]
          Length = 385

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDG---TVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + VDTE L       +LC++QL+ PG G    V +  +  G    P L+ +  +    K+
Sbjct: 23  VTVDTEFLRERTYYSKLCLIQLAFPGKGDENAVLVDPLVDGLDLEP-LLELFRNTAVVKV 81

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH  R D+ + F   GV   P+F T++A+ +   +  Q G +  +K +    + K+ + +
Sbjct: 82  FHAARQDLEIFFIDHGVIPDPLFDTQVAAMVC-GFGEQVGYETLVKRIAKQALDKSSRFT 140

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           DWS   L++ Q +YA +DV HL  +      +L+R GR+
Sbjct: 141 DWSRRPLTEAQKKYALADVTHLRVIYEYLAAELERTGRA 179


>gi|310767817|gb|ADP12767.1| ribonuclease D [Erwinia sp. Ejp617]
          Length = 369

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR V A+A+DTE +       RL ++QL  G+ T+ +I         P    +L+D++  
Sbjct: 15  ARRVPALALDTEFVRTRTYYPRLGLIQLYDGE-TISLIDPLPITDWTP-FRDLLLDQQVI 72

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V  + FGV  +P+  T+I +  +    +  G    ++   GI + K++ 
Sbjct: 73  KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS-CGFATIVESFTGIALDKSES 131

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q +YAA+DV +L  +  +  ++ +  G+   A   C  L  R
Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIASKLVDETEAAGQMAAALDECRLLCQR 185


>gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
          Length = 388

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D+I+VDTE+ G      ++C++Q+S   G   II     Q N  +L  +  D+K  KIFH
Sbjct: 27  DSISVDTESSGYYTYFSKVCLIQIS-AKGKNYIIDPLKLQ-NLESLGNLFEDKKILKIFH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L   FG + + +  T  +SRL      Q+ L   +     I +SK +Q S+W
Sbjct: 85  SAIDDIKALKKDFGFQFQNIADTGFSSRLLDH--EQYSLTYLVDYYHKIKLSKKEQKSNW 142

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               L   QLQYAA D V+L  +  +  E+L
Sbjct: 143 EKRPLEKSQLQYAALDTVYLETIWEKMKEEL 173


>gi|295689658|ref|YP_003593351.1| ribonuclease D [Caulobacter segnis ATCC 21756]
 gi|295431561|gb|ADG10733.1| ribonuclease D [Caulobacter segnis ATCC 21756]
          Length = 389

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 5/174 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           +AVDTE +       +LC++Q+ SP    V  I   A   +   L+ ++ DE+  K+FH 
Sbjct: 23  VAVDTEFMRETTYWPKLCLIQVASPTHEAV--IDPLADDIDLEPLLAVMRDERILKVFHA 80

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            R D+ + F       +P+F T++A  +   +  Q      ++++L I + K+ + +DW+
Sbjct: 81  ARQDVEI-FNNLKAMPKPLFDTQVAG-MAAGFGEQIAYDALVRQMLRIELDKSSRFTDWA 138

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
              L++ QL YA +DV HL AL     E+L+  GR          + D A  D+
Sbjct: 139 RRPLTEAQLTYALADVTHLAALFPILRERLETSGRLAWVEEEMTAISDPAAYDV 192


>gi|259908266|ref|YP_002648622.1| ribonuclease D [Erwinia pyrifoliae Ep1/96]
 gi|224963888|emb|CAX55391.1| Ribonuclease D [Erwinia pyrifoliae Ep1/96]
 gi|283478197|emb|CAY74113.1| rnd [Erwinia pyrifoliae DSM 12163]
          Length = 369

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR V A+A+DTE +       RL ++QL  G+ T+ +I         P    +L+D++  
Sbjct: 15  ARRVPALALDTEFVRTRTYYPRLGLIQLYDGE-TISLIDPLPITDWTP-FRDLLLDQQVI 72

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V  + FGV  +P+  T+I +  +    +  G    ++   GI + K++ 
Sbjct: 73  KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS-CGFATIVESFTGIALDKSES 131

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q +YAA+DV +L  +  +  ++ +  G+   A   C  L  R
Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIASKLVDETEAAGQMAAALDECRLLCQR 185


>gi|293392299|ref|ZP_06636633.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952833|gb|EFE02952.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 385

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AAR   A+A+DTE + +     +L ++Q+  GD  V +I     Q  +P  + +L D   
Sbjct: 29  AARQQSAVALDTEFVRVRTLYPKLGLIQMYFGD-QVALIDPLPIQDFSP-FIELLADTNL 86

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T++ +     +    G    ++    I I K  
Sbjct: 87  VKILHACSEDLDVFQRYFQQLPRPMCDTQVMAHFL-GFAGSTGFATLVQHYFQIEIDKGA 145

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             +DW A  LSD QLQYAA+DV +L  L  Q  ++L +        + C FL+++
Sbjct: 146 SRTDWLARPLSDTQLQYAAADVWYLLPLYGQMQQQLTQTEWQSAVENECEFLLNK 200


>gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148]
          Length = 640

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 76/152 (50%), Gaps = 17/152 (11%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREK 77
           ++  DTETL L P R +L ++QL   D      +D  ++  G  +  +L        R  
Sbjct: 20  SLCFDTETLQLQPERGKLRLLQLGARDRDTIVLIDCFQLDKG--DWADLRWFFSTPDRFW 77

Query: 78  IFHYGRFDIAVL----FYTFGVRVRPVFCTKIASRL-TRTYTN-QHGLKDNLKELLGINI 131
           + H   FD+  L     Y  G     V C+ +ASRL T    N +HGL   +K  L   +
Sbjct: 78  LAHNAVFDLGWLQEHNIYPAGW----VRCSMLASRLLTNGLPNSKHGLDSVVKRYLKKEL 133

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           SK QQ SDWS  DLS+EQL+YAA+DV  L  L
Sbjct: 134 SKEQQRSDWSG-DLSEEQLEYAANDVAALMEL 164


>gi|254461790|ref|ZP_05075206.1| ribonuclease D [Rhodobacterales bacterium HTCC2083]
 gi|206678379|gb|EDZ42866.1| ribonuclease D [Rhodobacteraceae bacterium HTCC2083]
          Length = 385

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVD---IIRIAAGQKNAPNLVGMLVDEKREKI 78
           + VDTE L       +LC+VQL+ PG    +   +  +  G    P L  +  D    K+
Sbjct: 23  VTVDTEFLRERTYYSKLCLVQLAMPGTDDSNGCLVDPLVEGISLEP-LYDLFRDTSVVKV 81

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH  R DI +     GV   P+F T++AS +   +  Q G +  ++++    I K+ + +
Sbjct: 82  FHAARQDIEIFQVDAGVIPTPLFDTQVASMVC-GFGEQVGYETLVRKIAKQEIDKSSRFT 140

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           DWS   LSD Q +YA +DV HL  +     +KL+  GRS
Sbjct: 141 DWSRRPLSDAQAKYALADVTHLRQVYEFLAKKLKDQGRS 179


>gi|149202482|ref|ZP_01879454.1| ribonuclease D [Roseovarius sp. TM1035]
 gi|149143764|gb|EDM31798.1| ribonuclease D [Roseovarius sp. TM1035]
          Length = 386

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIR 55
           M TI   + D+ A CA AR    + +DTE L       +LC++Q++ PG   D  V +  
Sbjct: 1   MKTITTTD-DLAAFCAMARKHPYVTLDTEFLRERTYYSKLCLLQMAVPGADDDTAVLVDP 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           I   + +   L  +  D    K+FH  R D+ +     GV   P+F T++A+ +   +  
Sbjct: 60  IDGAEMSMEPLYELFRDTSVVKVFHAARQDLEIFHVDAGVIPDPLFDTQVAA-MVCGFGE 118

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  +K +    + K+ + +DWS   L++ Q  YA +DV HL  +     +KL   G
Sbjct: 119 QVGYETLVKRIAKQTVDKSSRFTDWSRRPLTEAQKVYALADVTHLRVIYEYLAKKLASSG 178

Query: 176 RSDLATSCCNFLMDRA 191
           R        + L D A
Sbjct: 179 RDKWVAEELSVLTDPA 194


>gi|256372386|ref|YP_003110210.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008970|gb|ACU54537.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
          Length = 396

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E +FH    D+ ++    G R R +F T++A            L   L   LG++ISKA+
Sbjct: 91  ELVFHAADQDLEIIERAVGARPRRIFDTQVAGGFL--GAGHASLGALLDRYLGVSISKAE 148

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           ++SDW    L   QL YAA+DV +L AL  +  E+L   GR D A S    L++R   D+
Sbjct: 149 RTSDWLRRPLEPGQLAYAANDVRYLAALADRLLEELHARGREDWARSEMARLVERRRRDI 208

Query: 196 ---LGWENV 201
              L W  +
Sbjct: 209 EPELAWTRI 217


>gi|254473302|ref|ZP_05086699.1| ribonuclease D [Pseudovibrio sp. JE062]
 gi|211957418|gb|EEA92621.1| ribonuclease D [Pseudovibrio sp. JE062]
          Length = 405

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE L       +LC++Q++  D  V +  +A      P    ++ +    K+FH
Sbjct: 21  DFVTVDTEFLRETTFWPKLCVIQIANPDHAVLVDALAEDLDLEP-FFALMRNTDIVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++++  G    P+F +++A+ +   + +       + ++ G  I K+ + +DW
Sbjct: 80  AARQDIEIIYHLGGFVPSPLFDSQVAAMVC-GFGDSVSYDQLVSKVTGERIDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           S   L+++QL YA +DV HL  + L   ++L++ GRS
Sbjct: 139 SRRPLTNKQLAYALADVTHLREVYLFLKKQLEQKGRS 175


>gi|99034557|ref|ZP_01314528.1| hypothetical protein Wendoof_01000660 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 409

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)

Query: 14  ECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A+    IAVDTE +   +    +L ++Q+S G+ +  I+     + +   +  ++++
Sbjct: 32  ELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDTLVPEIDLSFIKKIMLN 90

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           +   K+FH  R DI  L   F     P+F T++A+     Y +  G    +++  GI + 
Sbjct: 91  QGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIALD 150

Query: 133 KAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           K + ++SDW    LS++QL YA +DVVHL+ L      KL+   R
Sbjct: 151 KIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNR 195


>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
 gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
          Length = 1613

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 7/154 (4%)

Query: 25   VDTETLGLMPRRDRLCIVQLSPGDG---TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            +D ET GL  R DR+ ++Q+S  D     +D+ ++          +  L+  +  K+ H 
Sbjct: 1061 LDIETTGLNHREDRIRLLQISTPDQPSVVIDVFKVPVPTLKECTWLVKLLGSQAVKVLHN 1120

Query: 82   GRFDIAVLFYTFGVRVR-PVFCTKIASRL-TRTYTNQHGLKDNLKE-LLGINISKAQQSS 138
            G+FDI  L +  G  V+ P+F T IA++L + T  N      ++ E  L I + K+QQ S
Sbjct: 1121 GKFDINFLSHN-GFNVKGPIFDTMIAAKLLSATRFNWSCKLGHVAERYLNIVLDKSQQFS 1179

Query: 139  DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            DW+ D L +EQ+ YA+ D   L  L     EKL+
Sbjct: 1180 DWTLDPLFEEQVIYASRDTAVLLPLYFILQEKLK 1213


>gi|188582284|ref|YP_001925729.1| ribonuclease D [Methylobacterium populi BJ001]
 gi|179345782|gb|ACB81194.1| ribonuclease D [Methylobacterium populi BJ001]
          Length = 384

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +       +LC++Q++  DG   ++   A   +      ++ DE   K+FH  
Sbjct: 23  VTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFELMADESTVKVFHSA 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++   G+   P F T++A+ +   Y +    +  + ++    I K+ + +DWS 
Sbjct: 83  RQDLEIIWLLGGLLPHPFFDTQVAA-MVCGYGDSVSYEQLVNDVAKARIDKSSRFTDWSR 141

Query: 143 DDLSDEQLQYAASDVVHL 160
             LS+ QL YA SDV HL
Sbjct: 142 RPLSEAQLAYALSDVTHL 159


>gi|148552971|ref|YP_001260553.1| ribonuclease D [Sphingomonas wittichii RW1]
 gi|148498161|gb|ABQ66415.1| ribonuclease D [Sphingomonas wittichii RW1]
          Length = 395

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 4/187 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +        LC++Q++  +    I   A      P L  ++ +E+  K+FH G
Sbjct: 30  VVVDTEFMRESTYWPDLCLIQIANSEEAAAIDPKAKDIDLTPLLDLLVENEEVLKVFHAG 89

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ ++    G    P+F T++A+ +      Q G  + ++ +LGI + K  + +DW+ 
Sbjct: 90  GQDLEIVHNLTGKTPYPLFDTQVAA-MAMGLGEQIGYSNLVETMLGIKLDKGARFTDWAR 148

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE---LDLLGWE 199
             L   Q+ YA  DV HL A+  +  E+L++ GR     +    L D A    L  L W 
Sbjct: 149 RPLDKRQIDYAIGDVTHLSAIFPRMLERLRKSGRGGWLDNEMERLGDPASYANLPELAWT 208

Query: 200 NVDIFSH 206
            + + S 
Sbjct: 209 RIRLPSR 215


>gi|150396023|ref|YP_001326490.1| ribonuclease D [Sinorhizobium medicae WSM419]
 gi|150027538|gb|ABR59655.1| ribonuclease D [Sinorhizobium medicae WSM419]
          Length = 383

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE L        LC++Q++  D  V +  +A G   A +   ++ +    K+FH  
Sbjct: 21  ITIDTEFLRETTFWPELCLIQMASPDMAVIVDPMAPGIDLA-SFFALMGNADVVKVFHAA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI ++ +   +   P+F T++A+ +   + +       +  +    I K+ + +DWS 
Sbjct: 80  RQDIEIIHHLGNLIPHPLFDTQVAAMVC-GFGDSVSYDQLVSRIKNEQIDKSSRFTDWSR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             L+D+QL YA +DV HL  +     ++L+R GRS         L +R   DL
Sbjct: 139 RPLTDKQLDYALADVTHLRDIYHYLVQELEREGRSSWLAEEMAILENRETYDL 191


>gi|42520085|ref|NP_966000.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409822|gb|AAS13934.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 392

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)

Query: 14  ECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A+    IAVDTE +   +    +L ++Q+S G+ +  I+     + +   +  ++++
Sbjct: 15  ELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKKIMLN 73

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           +   K+FH  R DI  L   F     P+F T++A+     Y +  G    +++  GI + 
Sbjct: 74  QGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIALD 133

Query: 133 KAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           K + ++SDW    LS++QL YA +DVVHL+ L      KL+   R
Sbjct: 134 KIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNR 178


>gi|182678372|ref|YP_001832518.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634255|gb|ACB95029.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 388

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE L       +LC+VQL+  +  V +  +A G   +P L  ++ +E   K+FH  
Sbjct: 23  VTVDTEFLRETTFWPKLCVVQLASTEEAVAVDALAEGLDLSP-LFELMANEATVKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++    +   P+F T++A+ +   + +Q    D ++ +  +++ K+ + +DWS 
Sbjct: 82  RQDLEIIWNLAKLIPTPLFDTQVAAMVC-GFGDQISYGDLVQTVTRVSLDKSSRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             LS  Q+ YA +DV +L  + L    KL+   R
Sbjct: 141 RPLSPAQVDYAIADVTYLRDIYLYLRRKLETSSR 174


>gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 388

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D+I++DTE+ G      ++C++Q+S   G   II     Q N   L  +  D+K  KIFH
Sbjct: 27  DSISIDTESSGYYTYFSKVCLIQIS-AKGKNYIIDPLKLQ-NLDGLGNLFEDKKILKIFH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L   FG +   +  T  +SRL      Q+ L   +     I +SK +Q S+W
Sbjct: 85  SAIDDIKALKKDFGFKFHNIADTGFSSRLLDH--EQYSLTYLVDYYHKIKLSKKEQKSNW 142

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
               L   QLQYAA D V+L  +  +  E+L +
Sbjct: 143 EKRPLEKSQLQYAALDTVYLETIWEKMKEELTK 175


>gi|58697529|ref|ZP_00372780.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
 gi|58535998|gb|EAL59702.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
          Length = 284

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 3/169 (1%)

Query: 10  DIPAECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           DI     A+    IAVDTE +   +    +L ++Q+S G+ +  I+     + +   +  
Sbjct: 11  DICEGLIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKK 69

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +++++   K+FH  R DI  L   F     P+F T++A+     Y +  G    +++  G
Sbjct: 70  IMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQG 129

Query: 129 INISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           I + K + ++SDW    LS++QL YA +DVVHL+ L      KL+   R
Sbjct: 130 IALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNR 178


>gi|312113633|ref|YP_004011229.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
 gi|311218762|gb|ADP70130.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
          Length = 404

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 17/174 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PG-DGTVDIIRIAAGQKNAPNL-----VGMLVDEKR 75
           + VDTE +     R +LC++Q++ PG +  VD +         PNL       ++ +   
Sbjct: 48  VTVDTEFMRQTTYRPKLCLIQMAAPGIEAVVDPL---------PNLDLSPFYALMANTAV 98

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH  R DI +++   GV   P+F T+IA+ +   + +       +K+LL  N  K  
Sbjct: 99  VKVFHAARQDIEIVWQEAGVIPMPLFDTQIAA-MALGHGDAISYGALVKKLLKKNHDKTY 157

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           Q+ DW    L  +QL+YA  DV +L  +  +  ++L++ GR          L D
Sbjct: 158 QAIDWCQRPLGPKQLEYALGDVTYLRDVYAKLKQRLEQTGREPWLEEEVAVLTD 211


>gi|84517066|ref|ZP_01004422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
 gi|84508961|gb|EAQ05422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
          Length = 385

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 6/173 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + VDTE L       +LC+VQ++     G+  V +  +A G    P L  +  D    K+
Sbjct: 23  VTVDTEFLRERTYYSKLCLVQMAYRDAAGEDAVLVDPLAEGISLDP-LYDLFRDPGVVKV 81

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH  R D+ +     GV   P+F T++A+ +   +  Q G +  ++++    + K+ + +
Sbjct: 82  FHAARQDLEIFHVDAGVIPAPLFDTQVAAMVC-GFGEQAGYETLVRKIAKAEVDKSSRFT 140

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           DWS   L+D Q +YA +DV HL  +      +L + GR+         L D A
Sbjct: 141 DWSRRPLTDAQAEYALADVTHLRDVYEYLANRLAKSGRTKWVAEEMAVLNDPA 193


>gi|225156183|ref|ZP_03724663.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2]
 gi|224803073|gb|EEG21316.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2]
          Length = 389

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 6/173 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           P   A   V  +A+DTE   +   + R+C++Q    DG V ++ +       P    +  
Sbjct: 40  PFLAALDRVKEVALDTEADNMYHYQTRVCLLQFL-IDGEVWLVDLMTPLPLKPLWEKLAT 98

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
              +  + H   FD+ +L    G R + +F T +A++L      + GL   L E  G+ +
Sbjct: 99  ---KHLVMHGSDFDLRLLHDLCGFRPKSLFDTMLAAQLLNR--QRIGLAALLSEHFGVTL 153

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            K  Q ++WS   L+ + L YA+ DV HL ALR   T +L RLGR +     C
Sbjct: 154 DKGGQKANWSKRPLTPKLLDYASLDVWHLPALRDILTRELSRLGRMEWMEQQC 206


>gi|58698273|ref|ZP_00373191.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630014|ref|YP_002726805.1| Ribonuclease D [Wolbachia sp. wRi]
 gi|225677056|ref|ZP_03788062.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|58535197|gb|EAL59278.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225590902|gb|EEH12123.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591995|gb|ACN95014.1| Ribonuclease D [Wolbachia sp. wRi]
          Length = 392

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 3/169 (1%)

Query: 10  DIPAECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           DI     A+    IAVDTE +   +    +L ++Q+S G+ +  I+     + +   +  
Sbjct: 11  DICEGLIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKK 69

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +++++   K+FH  R DI  L   F     P+F T++A+     Y +  G    +++  G
Sbjct: 70  IMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQG 129

Query: 129 INISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           I + K + ++SDW    LS++QL YA +DVVHL+ L      KL+   R
Sbjct: 130 IALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNR 178


>gi|88658362|ref|YP_507121.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas]
 gi|88599819|gb|ABD45288.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas]
          Length = 387

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 3/143 (2%)

Query: 23  IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           IAVDTE +        +LC++Q++ G     +I + A   +   L  +  +E   K+FH 
Sbjct: 24  IAVDTEFVRSSSEYYPKLCLIQIAYGKEQF-VIDVLAKDMDLSVLGHIFYNESIIKVFHD 82

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-AQQSSDW 140
            R DI  L   F     P+F T+IA+     Y N  G    +++ LGI++ K + + S+W
Sbjct: 83  CRQDIDALLTKFPEIPSPIFDTQIAAMFCCCYDNAVGYSKLVEQFLGISLDKLSLKRSNW 142

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
           +   LS +++QYA +DV++L+ L
Sbjct: 143 ALRPLSADKIQYALNDVIYLYEL 165


>gi|261253420|ref|ZP_05945993.1| ribonuclease D [Vibrio orientalis CIP 102891]
 gi|260936811|gb|EEX92800.1| ribonuclease D [Vibrio orientalis CIP 102891]
          Length = 371

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 22/180 (12%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73
           +AR VD + +DTE +       +L ++QL  G+    +D   I    ++    V +L D 
Sbjct: 18  SARNVDVVMLDTEFVRTRTYYPQLGLIQLFDGEKLSLIDPTVI----EDMTAFVELLKDT 73

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGI 129
              K+ H    D+ V   +FG    P+  T++ +         HGL      L    LG+
Sbjct: 74  SVLKVLHACGEDLEVFHNSFGCLPYPMVDTQLMAAFL-----GHGLSTGFAALVENYLGV 128

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-------RSDLATS 182
            + K++  +DW A  LSD+QL+YAA+DV +L  L  Q  EK+ + G        SDLA S
Sbjct: 129 ELDKSESRTDWLARPLSDKQLEYAAADVYYLQPLYEQLFEKITQAGWWEAAQQESDLAAS 188


>gi|50121299|ref|YP_050466.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
 gi|49611825|emb|CAG75274.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
          Length = 374

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 5/177 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+  + +I        AP    +L DE+  
Sbjct: 19  ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGE-QLSLIDPLTITDWAP-FQALLRDEEVT 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           K  H G  D+ V   TFG    P   T+I A+ L +  +  +G    + + +G+++ K++
Sbjct: 77  KFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPLS--YGFAALVADYMGVSLDKSE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
             +DW A  LS++Q  YAA+DV +L  + +Q     +  G  + A   C  L  R +
Sbjct: 135 SRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTETAGWMNAALDECLLLCQRKQ 191


>gi|68171541|ref|ZP_00544920.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999046|gb|EAM85718.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
          Length = 387

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 3/143 (2%)

Query: 23  IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           IAVDTE +        +LC++Q++ G     +I + A   +   L  +  +E   K+FH 
Sbjct: 24  IAVDTEFVRSSSEYYPKLCLIQIAYGKEQF-VIDVLAKDMDLSVLGHIFYNESIIKVFHD 82

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-AQQSSDW 140
            R DI  L   F     P+F T+IA+     Y N  G    +++ LGI++ K + + S+W
Sbjct: 83  CRQDIDALLTKFPEIPSPIFDTQIAAMFCCCYDNAVGYSKLVEQFLGISLDKLSLKRSNW 142

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
           +   LS +++QYA +DV++L+ L
Sbjct: 143 ALRPLSADKIQYALNDVIYLYEL 165


>gi|254294269|ref|YP_003060292.1| ribonuclease D [Hirschia baltica ATCC 49814]
 gi|254042800|gb|ACT59595.1| ribonuclease D [Hirschia baltica ATCC 49814]
          Length = 390

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVDTE         +LC++Q +  +    I  ++     AP  + ++ D  R K+FH  
Sbjct: 31  IAVDTEFHRESTFWPKLCLIQAATLEFDCLIDPLSPNIDLAP-FLDLMADTSRVKVFHAA 89

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +     G    P+F +++A+ +     +    ++ + +LL   + K+ Q +DW  
Sbjct: 90  RQDMEIFTKLIGTPPAPIFDSQVAA-MACGLGDSVSYENLVSQLLKARVDKSSQFTDWQR 148

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L+++QL YA  DV HL    ++   KL++LGR
Sbjct: 149 RPLTEKQLDYARGDVTHLRHCYVKLKAKLEKLGR 182


>gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
 gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
          Length = 296

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 10/160 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+DTE+      R+R+C++Q+S    D  VD + +       P+ +G ++ + RE + H
Sbjct: 32  VALDTESNSFHVYRERICLLQVSTRAADYIVDPLAVD------PSPLGEVLCDGRETVLH 85

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+  L   +G  +  +F T  A+R  R      GL   ++   G+ +SK  Q SDW
Sbjct: 86  GADYDVRCLRREYGWHLPRLFDTMAAAR--RLGRQGLGLSALVEAHFGVRLSKTFQRSDW 143

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
               L+  QL YAA D  +L ALR     +L  LG S+ A
Sbjct: 144 GQRPLTAAQLAYAALDTHYLLALRDMLAGELDTLGASEQA 183


>gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter sp. FRC-32]
 gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter sp. FRC-32]
          Length = 390

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 4/154 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A D E   L    +++C++Q+S    T  I  +A    +   L  +L D    K+FH  
Sbjct: 42  LAFDLEADSLHHYTEKVCLIQVSNLSQTALIDPLAPV--DLSPLAPVLADRGIRKVFHGA 99

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +D+  L+  FG+ V  +F T IA +       + GL   LK+  G+ ++K  Q +DWS 
Sbjct: 100 DYDMRSLYRDFGLEVCNMFDTMIACQFL--GEKEVGLAAALKKRFGVELNKKYQKADWSK 157

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
              S E ++YA  D   L  L LQ  E+L+  GR
Sbjct: 158 RPFSAEMIEYAKMDTALLIRLYLQLEEELRAKGR 191


>gi|119384625|ref|YP_915681.1| ribonuclease D [Paracoccus denitrificans PD1222]
 gi|119374392|gb|ABL69985.1| ribonuclease D [Paracoccus denitrificans PD1222]
          Length = 401

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 11/164 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQ--LSPGDGT-------VDIIRIAAGQKNAPNLVGMLVDE 73
           + +DTE L       +LC++Q  L P   T       V I  +  G    P L  +   +
Sbjct: 35  VTLDTEFLRERTYYSKLCLIQAALPPASATKAAGGLSVLIDPLVEGLSLEP-LYDLFRHK 93

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              K+FH  R D+ + F+  GV   P+F T+IA+ +   +  Q G +  +K++    + K
Sbjct: 94  PTVKVFHAARQDLEIFFHDAGVMPDPLFDTQIAAMVC-GFGEQVGYETLVKKIARQPLDK 152

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           + + +DWS   LSD Q  YA +DV HL A+    + +L + GR+
Sbjct: 153 SSRFTDWSHRPLSDAQAAYALADVTHLRAIYEFLSAQLDKTGRA 196


>gi|300717019|ref|YP_003741822.1| ribonuclease D [Erwinia billingiae Eb661]
 gi|299062855|emb|CAX59975.1| Ribonuclease D [Erwinia billingiae Eb661]
          Length = 373

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 3/177 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR   A+A+DTE +        L ++Q+  G+  + +I      + AP    +L+DEK  
Sbjct: 19  ARQFPALALDTEFVRTRTYYPGLGLIQMYDGE-NIALIDPLPITEWAP-FRDLLLDEKVI 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V  + + V   P+  T+I +  T    +  G    ++   GI + K++ 
Sbjct: 77  KFLHAGSEDLEVFLHEYDVLPVPMIDTQILAAFTGRPLS-CGFATIVESFTGIALDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
            +DW A  L+++Q QYAA+DV +L  +  +   + +  GR + A + C+ L  R ++
Sbjct: 136 RTDWLARPLTEKQCQYAAADVFYLLPIAHKLLAEAEESGRINAALNECSLLCQRRQM 192


>gi|56551610|ref|YP_162449.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761264|ref|ZP_04759352.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260752797|ref|YP_003225690.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56543184|gb|AAV89338.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374171|gb|EER63668.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552160|gb|ACV75106.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 390

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 3/159 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV-DEKREKI 78
            D IA+DTE +        LC++Q++       I  +A G    P L  +LV +E   K+
Sbjct: 23  ADFIAIDTEFIRENSYWPELCLIQIADDKEAAAIDPLAPGLDMTP-LTDLLVNNEDILKV 81

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH G  D+ ++ +  G    P+F T+IA+ +      Q G  + ++  L I + K  + +
Sbjct: 82  FHAGGQDLEIILHHTGKMPFPLFDTQIAA-MALGVGEQVGYSNLVERYLSIKLDKGARFT 140

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           DWS   L   QL YA +DV HL  L     ++L+  GR 
Sbjct: 141 DWSHRPLDRRQLDYAIADVTHLATLFPMLLKELRDKGRG 179


>gi|85373619|ref|YP_457681.1| ribonuclease D [Erythrobacter litoralis HTCC2594]
 gi|84786702|gb|ABC62884.1| ribonuclease D [Erythrobacter litoralis HTCC2594]
          Length = 401

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 1/169 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +        LC++Q+   +    +  +A G    P L  M  +E   K+FH G
Sbjct: 26  VCIDTEFMRENTYWPELCLIQIGNEEEAAAVDPLADGIDLQPLLDLMCENEDILKVFHAG 85

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ +++   G    P+F T+IA  +  + + Q G  + ++  L   I K  + +DWS 
Sbjct: 86  GQDVEIVYNLTGKTPFPIFDTQIAM-MAISQSEQIGYANLVESWLNKTIDKGARFTDWSR 144

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             L+D Q++YA  DV +L  +  +   KL + GR     +  + L D A
Sbjct: 145 RPLTDRQIEYAIGDVTYLAKIFPKILNKLVKTGRGAWLNAEMDKLADPA 193


>gi|308234516|ref|ZP_07665253.1| ribonuclease D [Atopobium vaginae DSM 15829]
 gi|328944110|ref|ZP_08241575.1| ribonuclease D [Atopobium vaginae DSM 15829]
 gi|327492079|gb|EGF23853.1| ribonuclease D [Atopobium vaginae DSM 15829]
          Length = 376

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 3/140 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D +A+DTE +       +LC++QL+     V +  ++    +  +L  + +D+K  KIFH
Sbjct: 20  DVLAIDTEFMREKTFYPKLCLIQLATRSEIVLVDPLSIP--DLTDLCKLFLDKKITKIFH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+ +++  F    +PVF T++A+     +  Q G    +  L  +++ KA+  +DW
Sbjct: 78  ACSQDLELIYDIFSCLPKPVFDTQVAAAFL-GHRFQIGYGPLVDALCHVHLPKAESLTDW 136

Query: 141 SADDLSDEQLQYAASDVVHL 160
           +   L++EQL+YAA DV +L
Sbjct: 137 TRRPLAEEQLEYAADDVRYL 156


>gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
          Length = 399

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQL+  +    +D ++    +K    L  +  D+   KI H
Sbjct: 48  IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 103

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q SDW
Sbjct: 104 SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 162

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178
               L+  QL YA  DV +L    +Q  E L Q+L +S+
Sbjct: 163 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 197


>gi|320163487|gb|EFW40386.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 467

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 14/175 (8%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPN 65
           E  +P   AA   + I +DTE L       +LC++QLS     G VD + I+      P 
Sbjct: 149 EAFLPILAAA---ETIGLDTEFLSFPRYTPQLCVLQLSTETDLGIVDALSIS------PE 199

Query: 66  LVGMLVDEKREK--IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           ++  L     EK  I H    D A+L+   G     VF T+IA+          G    +
Sbjct: 200 MLKKLCLRICEKPVIVHSCSSDCAILYDIAGTLPAKVFDTQIAAAFCYPIM-MMGYGQLV 258

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           + L  + + K+   +DWS   L  +++ YA SDVVHLHA+R +   ++  LGR++
Sbjct: 259 ETLFEVQVDKSLTLTDWSLRPLKKDEVAYAISDVVHLHAIRDKLNARIAELGRTE 313


>gi|94500848|ref|ZP_01307374.1| ribonuclease D [Oceanobacter sp. RED65]
 gi|94426967|gb|EAT11949.1| ribonuclease D [Oceanobacter sp. RED65]
          Length = 382

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 9/175 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPN------LVGMLVDEK 74
           IA+D+E + +     +L ++Q++ G  T  VD +RI    +  P       L+ +L ++ 
Sbjct: 23  IALDSEFMRVDTFYPKLALIQINDGSETYLVDPVRINRAHRGEPREEVWGPLIEVLSNQN 82

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+ H    D    +   GV   P+  T+ A+ +  +     G +  +K+LL I++ K 
Sbjct: 83  VVKVLHSPSEDFDAFYSNLGVVPSPIIDTQWAAAMA-SIDGIMGYQKLVKQLLDIDLEKG 141

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
              SDW    L+DEQ+ YAA DV HL  +  +   +L   GR       C  +++
Sbjct: 142 ATRSDWLQRPLTDEQIHYAADDVEHLLEITKRLETQLVTQGRWTWLLEDCERMVE 196


>gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
 gi|295313032|ref|ZP_06803730.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
 gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 363

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQL+  +    +D ++    +K    L  +  D+   KI H
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q SDW
Sbjct: 78  SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178
               L+  QL YA  DV +L    +Q  E L Q+L +S+
Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171


>gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
 gi|224456967|ref|ZP_03665440.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370381|ref|ZP_04986386.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
 gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
          Length = 364

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQL+  +    +D ++    +K    L  +  D+   KI H
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q SDW
Sbjct: 78  SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178
               L+  QL YA  DV +L    +Q  E L Q+L +S+
Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171


>gi|315634066|ref|ZP_07889355.1| ribonuclease D [Aggregatibacter segnis ATCC 33393]
 gi|315477316|gb|EFU68059.1| ribonuclease D [Aggregatibacter segnis ATCC 33393]
          Length = 385

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR   A+A+DTE + +     +L ++QL  GD  V +I     Q  +P  + +L DE   
Sbjct: 30  ARTQSAVALDTEFVRVRTLHPKLGLIQLYAGD-EVALIDPTMIQDFSP-FIALLADESVL 87

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  + F    +P+  T++ +     +    G    ++    I I K   
Sbjct: 88  KVLHACGEDLEVFQHYFQQLPQPMCDTQVMANFL-GFAGSAGFATLVQHYFHIEIDKGAS 146

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS+ QL+YAA+DV +L  L +Q   +L +        + C FL+ +
Sbjct: 147 RTDWLARPLSEIQLRYAAADVWYLLPLYVQMQTQLAQTEWQSAVKNECEFLLHK 200


>gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 364

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQL+  +    +D ++    +K    L  +  D+   KI H
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q SDW
Sbjct: 78  SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178
               L+  QL YA  DV +L    +Q  E L Q+L +S+
Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171


>gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 364

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQL+  +    +D ++    +K    L  +  D+   KI H
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q SDW
Sbjct: 78  SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178
               L+  QL YA  DV +L    +Q  E L Q+L +S+
Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171


>gi|296284765|ref|ZP_06862763.1| ribonuclease D [Citromicrobium bathyomarinum JL354]
          Length = 391

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 1/157 (0%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC+VQ+        I  +A G    P L  +  +E   KIFH
Sbjct: 24  DFVCVDTEFMRENTYWPELCLVQIGDEHEAAAIDPLADGIDLKPLLDLLTENEDVLKIFH 83

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
            G  D+ + +   G    P+F T+IA  +  + + Q G  + ++  L   I K  + +DW
Sbjct: 84  AGSQDVEIFYNLTGKTPHPIFDTQIAM-MAISQSEQIGYANLVEHWLDKTIDKGARFTDW 142

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           S   L+D QL+YA  DV +L  +  +  +KL +  R 
Sbjct: 143 SRRPLTDRQLEYAIGDVTYLAKIFPRILKKLMKTDRG 179


>gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS]
 gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|167009819|ref|ZP_02274750.1| ribonuclease III [Francisella tularensis subsp. holarctica FSC200]
 gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
 gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS]
 gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
          Length = 364

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQL+  +    +D ++    +K    L  +  D+   KI H
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q SDW
Sbjct: 78  SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178
               L+  QL YA  DV +L    +Q  E L Q+L +S+
Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171


>gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548]
 gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548]
          Length = 364

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQL+  +    +D ++    +K    L  +  D+   KI H
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDIIKIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q SDW
Sbjct: 78  SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178
               L+  QL YA  DV +L    +Q  E L Q+L +S+
Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171


>gi|255261512|ref|ZP_05340854.1| ribonuclease D [Thalassiobium sp. R2A62]
 gi|255103847|gb|EET46521.1| ribonuclease D [Thalassiobium sp. R2A62]
          Length = 385

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKIF 79
           + VDTE L       +LC++QL+ PG+G  + + +   +   +  +L  +  D    K+F
Sbjct: 23  VTVDTEFLRERTYYSKLCLIQLAYPGEGDENAVLVDPLEDGLSLASLYDLFRDPNVVKVF 82

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H  R D+ + F   G+   P+F T++A+ +   +  Q G +  ++++    + K+ + +D
Sbjct: 83  HAARQDLEIFFVDEGIIPAPLFDTQVAAMVC-GFGEQVGYETLVRKIAKAPLDKSSRFTD 141

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           WS   LSD Q +YA  DV +L  +     +KL +  R+
Sbjct: 142 WSRRPLSDAQKKYALGDVTYLREIYEFLADKLAKNNRA 179


>gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799]
 gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799]
          Length = 374

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 4/173 (2%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           ++ D+ A C   R  DA+A+DTE +       +L ++QL  G+ T+ +I     Q   P 
Sbjct: 12  NDDDLAALCRQCRQKDAVALDTEFVRTRTLHAQLGLIQLYDGE-TLALIDPLEIQDLGP- 69

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  ++ D+   K+ H    D+ +  Y  GV  +P+F T++A  L        G    +  
Sbjct: 70  LWQLIADKNVVKVLHSASEDLEIFAYRGGVIPQPLFDTQVAGVLL-NLGGAMGYGKLIHH 128

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            LG+ + K +  +DW    LS++QL YAA+DV +L  +       ++ +GR D
Sbjct: 129 YLGLELDKGEARTDWLKRPLSEKQLTYAAADVYYLLQVYRMMRPAIEEMGRLD 181


>gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549]
          Length = 364

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQL+  +    +D ++    +K    L  +  D+   KI H
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDIIKIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q SDW
Sbjct: 78  SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178
               L+  QL YA  DV +L    +Q  E L Q+L +S+
Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171


>gi|190570587|ref|YP_001974945.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356859|emb|CAQ54230.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 394

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 3/165 (1%)

Query: 14  ECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A+    IAVDTE +   +    RL ++Q+S G+ +  I+ +     +   +  ++++
Sbjct: 15  ELMAKDPKFIAVDTEFIRNNLTYYPRLSLIQISYGEKSF-IVDVLVPGIDLSLIKKIMLN 73

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +  K+FH  R DI  L         P+F T++A+     Y +  G    +++  G+ + 
Sbjct: 74  REITKVFHSCRQDIESLLTVLKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGVALD 133

Query: 133 KAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           K + ++SDW    LS++QL YA +DV+HL+ L      KL+   R
Sbjct: 134 KIKAKNSDWLKRPLSEDQLDYAVNDVIHLYDLHQILCNKLEENNR 178


>gi|294677027|ref|YP_003577642.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
 gi|294475847|gb|ADE85235.1| ribonuclease D-2 [Rhodobacter capsulatus SB 1003]
          Length = 384

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 3/162 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG-DGTVDIIRIAAGQKNAPNLVGMLVDEK 74
           A+    + VDTE L       +LC+VQ++ PG +G   ++       +   L  +   + 
Sbjct: 17  AKAAPYVTVDTEFLRERTYWSKLCLVQMALPGKEGEAVLVDPLVEGLSLEPLYDLFRHQA 76

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+FH  R D+ + F   GV   P+F T++A+ +   +  Q G +  +K++   ++ K 
Sbjct: 77  TVKVFHAARQDLEIFFTEAGVFPLPLFDTQVAAMVC-GFGEQVGYETLVKKIAKQSLDKT 135

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            + +DWS   L+D Q  YA +DV HL  +    +++L++ GR
Sbjct: 136 SRFTDWSRRPLTDAQKAYALADVTHLRVIYEFLSKELRKSGR 177


>gi|312172621|emb|CBX80877.1| Ribonuclease D [Erwinia amylovora ATCC BAA-2158]
          Length = 369

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR V A+A+DTE +       RL ++QL  G+ T+ +I         P    +L+D++  
Sbjct: 15  ARQVPALALDTEFVRTRTYYPRLGLIQLYDGE-TICLIDPLPITDWTP-FRDLLLDQQVI 72

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V  + FGV  +P+  T+I +  +    +  G    ++   GI + K++ 
Sbjct: 73  KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS-CGFATIVESFTGIVLDKSES 131

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q +YAA+DV +L  +  +   + +  G+   A   C  L  R
Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAALDECRLLCQR 185


>gi|260576346|ref|ZP_05844337.1| ribonuclease D [Rhodobacter sp. SW2]
 gi|259021417|gb|EEW24722.1| ribonuclease D [Rhodobacter sp. SW2]
          Length = 385

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 4/179 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG--TVDIIRIAAGQKNAPNLVGMLVD 72
           AA+    + +DTE L       +LC++Q++ PG     V +  I   + +   L  +   
Sbjct: 16  AAKREPYVTIDTEFLRERTYWSKLCLIQMALPGKTGRAVLVDPIEGPEMSLEPLYDLFRH 75

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           +   K+FH  R D+ + F        P+F T++A+ +   Y  Q G +  +K++   N+ 
Sbjct: 76  QATVKVFHAARQDLEIFFVEGNSFPEPLFDTQVAA-MVCGYGEQVGYETLVKKIAKENLD 134

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K  + +DWS   LS+ Q  YA +DV HL  +      ++ + GR        + L D A
Sbjct: 135 KTSRFTDWSRRPLSEAQSDYALADVTHLRVVYESLAAQIAKSGRQKWVEEELSILTDPA 193


>gi|292488477|ref|YP_003531361.1| ribonuclease D [Erwinia amylovora CFBP1430]
 gi|291553908|emb|CBA20953.1| Ribonuclease D [Erwinia amylovora CFBP1430]
          Length = 369

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR V A+A+DTE +       RL ++QL  G+ T+ +I         P    +L+D++  
Sbjct: 15  ARQVPALALDTEFVRTRTYYPRLGLIQLYDGE-TICLIDPLPITDWTP-FRDLLLDQQVI 72

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V  + FGV  +P+  T+I +  +    +  G    ++   GI + K++ 
Sbjct: 73  KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS-CGFATIVESFTGIVLDKSES 131

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q +YAA+DV +L  +  +   + +  G+   A   C  L  R
Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAALDECRLLCQR 185


>gi|291617685|ref|YP_003520427.1| Rnd [Pantoea ananatis LMG 20103]
 gi|291152715|gb|ADD77299.1| Rnd [Pantoea ananatis LMG 20103]
          Length = 373

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 4/184 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR   A+A+DTE +       +L ++QL  G+  V I  +    ++    + +L D +  
Sbjct: 19  ARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPV--RDWSPFIELLTDTRVT 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V  + F V  +P+  T+I +  +    +  G    +     + + K++ 
Sbjct: 77  KFLHAGGEDLEVFLHRFAVLPQPMIDTQILAAFSGQPLS-WGFASMVAHFTQVELDKSEA 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
            +DW A  L++ Q QYAA+DV +L  +  Q  +++++ G    A S C  L  R  LD L
Sbjct: 136 RTDWLARPLTERQCQYAAADVHYLLPIAHQLMQQVEQAGNMAAALSECENLCQR-RLDSL 194

Query: 197 GWEN 200
             E+
Sbjct: 195 APED 198


>gi|292899665|ref|YP_003539034.1| ribonuclease D [Erwinia amylovora ATCC 49946]
 gi|291199513|emb|CBJ46630.1| ribonuclease D [Erwinia amylovora ATCC 49946]
          Length = 373

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR V A+A+DTE +       RL ++QL  G+ T+ +I         P    +L+D++  
Sbjct: 19  ARQVPALALDTEFVRTRTYYPRLGLIQLYDGE-TICLIDPLPITDWTP-FRDLLLDQQVI 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V  + FGV  +P+  T+I +  +    +  G    ++   GI + K++ 
Sbjct: 77  KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFSGRPLS-CGFATIVESFTGIVLDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q +YAA+DV +L  +  +   + +  G+   A   C  L  R
Sbjct: 136 RTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAALDECRLLCQR 189


>gi|261821503|ref|YP_003259609.1| ribonuclease D [Pectobacterium wasabiae WPP163]
 gi|261605516|gb|ACX88002.1| ribonuclease D [Pectobacterium wasabiae WPP163]
          Length = 374

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 6/180 (3%)

Query: 15  CA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           CA A+    +A+DTE +       +L ++QL  G+  + +I        AP    +L DE
Sbjct: 16  CAQAQRFPQVALDTEFVRTRTYYPQLGLIQLYDGE-QLSLIDPLTITDWAP-FQALLRDE 73

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINIS 132
           +  K  H G  D+ V   TFG    P   T+I A+ L +  +  +G    + + +G+ + 
Sbjct: 74  QVTKFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPLS--YGFAALVADYMGVTLD 131

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           K++  +DW A  LS++Q  YAA+DV +L  + +Q     +  G  + A   C  L  R +
Sbjct: 132 KSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVTDTEAAGWMNAALDECLLLCQRKQ 191


>gi|329898076|ref|ZP_08272286.1| Ribonuclease D [gamma proteobacterium IMCC3088]
 gi|328920975|gb|EGG28399.1| Ribonuclease D [gamma proteobacterium IMCC3088]
          Length = 373

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A+ +DTE +       +  +VQL+ G G + ++   A   +A  L  +L  E+  K+ H 
Sbjct: 27  AVVLDTEFVRERTYYPKPALVQLA-GAGHISLVDPVA-VTDASALSSLLESERTLKVVHS 84

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
           G  D+ V     G  ++  F T++A+ L   Y    G ++ ++  LG  + K +  SDW 
Sbjct: 85  GSEDLEVFQAWLGCPIKGWFDTQVAAALL-GYGYAIGYRNIVETFLGEELDKGETRSDWL 143

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
              LSD QLQYA +DV++L  +  +  ++ + LGR
Sbjct: 144 QRPLSDSQLQYAIADVLYLEPVFERLYQEAEALGR 178


>gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469]
 gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469]
          Length = 379

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           A+    +AVDTE L       +LC+VQ+S G     +D + I     +   L  +L + +
Sbjct: 19  AKTSHILAVDTEFLREKTYFPKLCLVQVSTGSEIAAIDPLLI----DDLTPLKELLENPE 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--TRTYTNQHGLKDNLKELLGINIS 132
             KI H    D+ VL         PVF T++A+     R   +  GL +N      + ++
Sbjct: 75  IVKILHACSQDLEVLLEKMDCACAPVFDTQVAAAFLGMRQQVSYAGLVENFA---NVKLA 131

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           KA+  +DWS   L  EQL YA  DV +L A+  Q  EKL +L R
Sbjct: 132 KAESLTDWSKRPLDKEQLVYAEDDVRYLPAIYNQMVEKLIKLDR 175


>gi|303232226|ref|ZP_07318925.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
 gi|302481636|gb|EFL44697.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
          Length = 437

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +       +LC++Q++    +  +  +A    +  +L  +L D+   K+F   
Sbjct: 83  VAIDTEFIREKTYYPQLCLIQMATHTQSAVVDPLACS--SLCDLACLLEDKSIIKVFFAC 140

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI VL+   GV  + VF  ++A+     Y  Q G    ++ ++G+++ K Q  +DWS 
Sbjct: 141 SQDIEVLYDALGVVPKNVFDAQLAAAFL-GYRYQLGYGALVEAMVGVHLPKTQALTDWSL 199

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L++EQL+YAA DV++   +      +L R  R
Sbjct: 200 RPLTEEQLKYAADDVIYQPQMYTLLVRELTRTNR 233


>gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1]
          Length = 364

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 11/153 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQL+  +    +D ++    +K    L  +  D+   KI H
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q SDW
Sbjct: 78  SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
               L+  QL YA  DV +L    +Q  E LQ+
Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQ 165


>gi|28199772|ref|NP_780086.1| ribonuclease D [Xylella fastidiosa Temecula1]
 gi|182682522|ref|YP_001830682.1| ribonuclease D [Xylella fastidiosa M23]
 gi|28057893|gb|AAO29735.1| ribonuclease D [Xylella fastidiosa Temecula1]
 gi|182632632|gb|ACB93408.1| ribonuclease D [Xylella fastidiosa M23]
          Length = 362

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 3/187 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +   D  A    R    I +DTE +        L +VQ++ GD  + +  +  G  +A  
Sbjct: 5   IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIGDEILLVDPLVPGMTDALG 64

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      KI H    D+    Y  GV  RP+F T+I + LT       G +  + +
Sbjct: 65  L--WLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGM-GYQKLVAK 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  + + K +  SDW    L+  QL YAA+DV +L AL    TE+L  + RS      C 
Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181

Query: 186 FLMDRAE 192
            L D  E
Sbjct: 182 RLTDNIE 188


>gi|213019164|ref|ZP_03334971.1| putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995273|gb|EEB55914.1| putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 378

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 9/159 (5%)

Query: 23  IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           IAVDTE     L   PR   L ++Q+S G+ +  I+ +     +   +  ++++ +  K+
Sbjct: 8   IAVDTEFIRNNLTYYPR---LSLIQISYGEKSF-IVDVLVPGIDLSLIKKIMLNREITKV 63

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QS 137
           FH  R DI  L         P+F T++A+     Y +  G    +++  G+ + K + ++
Sbjct: 64  FHSCRQDIESLLTVLKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGVALDKIKAKN 123

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           SDW    LS++QL YA +DV+HL+ L      KL+   R
Sbjct: 124 SDWLKRPLSEDQLDYAVNDVIHLYDLHQILCNKLEENNR 162


>gi|322832720|ref|YP_004212747.1| ribonuclease D [Rahnella sp. Y9602]
 gi|321167921|gb|ADW73620.1| ribonuclease D [Rahnella sp. Y9602]
          Length = 373

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 7/170 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IA+DTE +       +L ++QL  G+    +D + I A Q      + +LVD    K  H
Sbjct: 25  IALDTEFVRTRTYYPQLGLIQLFDGERLTLIDPLPITAWQP----FIDLLVDPDVIKFLH 80

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
            G  D+ V    FGV   P+  T+I +  +    +  G    + E  G+ + K++  +DW
Sbjct: 81  AGSEDLEVFLNAFGVMPSPLIDTQILAAFSGRPLS-CGFARLVAETTGVELDKSESRTDW 139

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            A  LS++Q  YAA+DV +L  L  Q   + Q  G  D A   C  L  R
Sbjct: 140 IARPLSEKQCVYAAADVWYLLPLADQLMRETQDAGWMDAALDECLALCRR 189


>gi|311279296|ref|YP_003941527.1| ribonuclease D [Enterobacter cloacae SCF1]
 gi|308748491|gb|ADO48243.1| ribonuclease D [Enterobacter cloacae SCF1]
          Length = 386

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 6/182 (3%)

Query: 11  IPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           + A C AAR   AIA+DTE +       +L ++Q+  GD  V I  ++    +      +
Sbjct: 21  LKAACDAARGAPAIALDTEFVRTRTYYPQLGLIQMYDGDSVVLIDPLSI--TDWTPFRDL 78

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLG 128
           L+D    K  H G  D+ V   TFGV   P+  T+I A+   R  +   G    ++E  G
Sbjct: 79  LLDGAVTKYLHAGSEDLEVFLNTFGVLPEPLIDTQILAAFCGRPMS--WGFAAMVEEYTG 136

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           I + K++  +DW A  L++ Q  YAA+DV +L  +  +   + +  G    A   C  + 
Sbjct: 137 IALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMAETEASGWLPAALDECRLMQ 196

Query: 189 DR 190
            R
Sbjct: 197 QR 198


>gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella tularensis subsp. novicida U112]
 gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
 gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG]
 gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112]
 gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
 gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG]
          Length = 364

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQL+  +    +D +     +K    L  +  D+   KI H
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLEDLEFKK----LKEIFEDKDIIKIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q SDW
Sbjct: 78  SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178
               L+  QL YA  DV +L    +Q  E L Q+L +S+
Sbjct: 137 RNRPLTQNQLNYAIKDVEYL----IQLKEYLQQQLAKSE 171


>gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 364

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQL+  +    +D ++    +K    L  +  D+   KI H
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLKDLEFKK----LKEIFEDKDILKIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q SDW
Sbjct: 78  SATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQFSDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSD 178
               L+  QL Y+  DV +L    +Q  E L Q+L +S+
Sbjct: 137 RNRPLTQNQLNYSIKDVEYL----IQLKEYLQQQLAKSE 171


>gi|222825102|dbj|BAH22259.1| putative ribonuclease D [Wolbachia endosymbiont of Cadra cautella]
          Length = 394

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 23  IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           IA+DTE +   +    +L ++Q+S G+ +  I+     + +   +  M++++   K+FH 
Sbjct: 24  IAIDTEFIRNNLTYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKKMMLNQGIIKVFHS 82

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSSDW 140
            R DI  L   F     P+F T++A+     Y +  G    +++  GI + K + ++SDW
Sbjct: 83  CRQDIESLLTVFKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIALDKIKAKNSDW 142

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
               LS++QL YA +DVV+L+ L      KL+   R
Sbjct: 143 LRRPLSEDQLDYAINDVVYLYDLYQILCNKLEESNR 178


>gi|114704849|ref|ZP_01437757.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
 gi|114539634|gb|EAU42754.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
          Length = 383

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +        LC++Q++  D  V +  +A G    P    ++ DE   K+FH  
Sbjct: 23  VTVDTEFIRETTFWPELCLIQMASDDTEVLVDPLAKGLSLDP-FFALMADESVVKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++    V  +P+F T+IA+ +   +         +  L    I K+ + +DW  
Sbjct: 82  RQDLEIVYKLGAVIPKPLFDTQIAAMVC-GFGESIAYDQLVARLTDGRIDKSSRFTDWRH 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             LSD+QL YA +DV HL  +      +L+   R          L D    DL
Sbjct: 141 RPLSDKQLTYALADVTHLRDVYKALKAQLEETSRHSWLDEEMAILADPQTYDL 193


>gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989]
 gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989]
          Length = 383

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 7/171 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           AIA+DTE +        + ++Q++  +G   +D + I+  Q  A     +L +    K+ 
Sbjct: 39  AIALDTEFVRTRTYYPHIGLLQIADENGVYLIDPLAISDTQPMA----DVLQNPAIVKVV 94

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+ V  Y FGV    +F T++A+     Y +  G  + L+E+  I+I K +  SD
Sbjct: 95  HACSEDLEVFQYAFGVLPESLFDTQVAAGFA-GYGSSIGYANLLREIKRIDIPKQETRSD 153

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           W    LSD QL+YAA DV +L  +     EKLQ+  R     + C  ++++
Sbjct: 154 WLQRPLSDAQLRYAALDVEYLLEIYRGLVEKLQQQQRLLWVEADCQRMIEK 204


>gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA]
 gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA]
          Length = 381

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 4/165 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A D E   +   ++++C++Q +   G   I+   A    +P L  +  +    K+FH  
Sbjct: 30  VACDLEADSMHHYQEKVCLIQFA-VPGYAAIVDPLAAPDISP-LAPLFANAAIRKVFHGA 87

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +DI  L   FG+ V  +F T IA +L      + GL   L++  G+ + K  Q +DWS 
Sbjct: 88  DYDIRSLHRDFGIEVNNLFDTMIACQLL--GEREFGLAAQLRKRFGVELDKQYQRADWSR 145

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
             L+   ++YA  D   L  L  Q   +L+  GR       C  L
Sbjct: 146 RPLTVGMIEYAVKDTTLLIELYRQLVAELEEKGRRGWVEEECELL 190


>gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
 gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I
 gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
          Length = 574

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 12/152 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTET G     DR+ +VQ+   + T  +I +   Q   P  +  L++E R  + H  
Sbjct: 25  LYLDTETTG-----DRIRLVQIGDEENTY-VIDLYEIQDIEP--LRKLINE-RGIVGHNL 75

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           +FD+  L Y +G+     F T IAS L      +H L   +  LLG ++ K+ Q+SDW A
Sbjct: 76  KFDLKYL-YRYGIFPSATFDTMIASYLLGY--ERHSLNHIVSNLLGYSMDKSYQTSDWGA 132

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
             LSD QL+YAA+DV+ L  L  +  + L  L
Sbjct: 133 SVLSDAQLKYAANDVIVLRELFPKMRDMLNEL 164


>gi|227111497|ref|ZP_03825153.1| ribonuclease D [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 374

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 5/177 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+  + +I        AP    +L DE+  
Sbjct: 19  ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGE-QLSLIDPLTITDWAP-FQALLRDEQVT 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           K  H G  D+ V    FG    P   T+I A+ L +  +  +G    + + +G+ + K++
Sbjct: 77  KFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPLS--YGFAALVADYMGVTLDKSE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
             +DW A  LS++Q  YAA+DV +L  + +Q     +  G  + A   C  L  R +
Sbjct: 135 SRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWMNAALDECLLLCQRKQ 191


>gi|52425412|ref|YP_088549.1| ribonuclease D [Mannheimia succiniciproducens MBEL55E]
 gi|52307464|gb|AAU37964.1| Rnd protein [Mannheimia succiniciproducens MBEL55E]
          Length = 380

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 4/177 (2%)

Query: 15  CA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           CA A    AIA+DTE + +     +L ++QL  G+  V +I     Q  +P    +L D 
Sbjct: 27  CARASTKSAIALDTEFVRIRSYYPKLGLIQLYDGE-QVSLIDPQEIQDFSP-FKQLLADP 84

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K  K+ H    D+ V  + +     P+  T+I +     + N  GL   +K    + I K
Sbjct: 85  KILKVLHACHEDLEVFQHYYQQLPAPMLDTQIMANFL-GFQNSMGLASLIKHYFNLEIDK 143

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
               +DW A  LS+ QL YAA+DV +L  L  +    L++          CN L+++
Sbjct: 144 GASRTDWLARPLSNRQLAYAAADVWYLLPLYCKMQNALEQTRWQSAVEFDCNLLLEK 200


>gi|296446899|ref|ZP_06888835.1| ribonuclease D [Methylosinus trichosporium OB3b]
 gi|296255574|gb|EFH02665.1| ribonuclease D [Methylosinus trichosporium OB3b]
          Length = 388

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 87/171 (50%), Gaps = 5/171 (2%)

Query: 10  DIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           D+ A CA  +R+   + VDTE L       ++C++QL+  +    +  +A G   +P   
Sbjct: 9   DLAAACARLSRH-PFVTVDTEFLRETTFWPKVCVIQLASPEEAFAVDTLAEGLDLSP-FF 66

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            ++ D    K+FH  R D+ +++    +   P+F T++A+ +   + +Q    + +K + 
Sbjct: 67  ELMADASVVKVFHAARQDLEIIWRLARLIPTPLFDTQVAA-MVCGFGDQASYVELVKAIA 125

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             ++ K+ + +DWS   LS  Q+ YA +DV HL  +     ++L+R  R D
Sbjct: 126 KESLDKSSRFTDWSKRPLSVAQIDYAIADVTHLRQIYTHLRQRLERSNRLD 176


>gi|254512186|ref|ZP_05124253.1| ribonuclease D [Rhodobacteraceae bacterium KLH11]
 gi|221535897|gb|EEE38885.1| ribonuclease D [Rhodobacteraceae bacterium KLH11]
          Length = 385

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 7/165 (4%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG---TVDIIRIAAGQKNAPNLVGMLV 71
           AA+Y   + VDTE L       +LC+VQL+ P +G    V +  +A G    P L  +  
Sbjct: 17  AAQY-PYVTVDTEFLRERTYYSKLCLVQLAVPAEGDDSAVLVDPLAEGMSLDP-LYELFR 74

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           +E   K+FH  R D+ + +   GV   P+F T++A+ +   +  Q G +  ++++    +
Sbjct: 75  NESVVKVFHAARQDLEIFWVDAGVFPTPLFDTQVAAMVC-GFGEQVGYETLVRKICKEGV 133

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            K  + +DWS   L++ Q  YA +DV HL  +      +L++  R
Sbjct: 134 DKTSRFTDWSRRPLTEAQKSYALADVTHLRKIYEYLAGELKKTKR 178


>gi|146312020|ref|YP_001177094.1| ribonuclease D [Enterobacter sp. 638]
 gi|145318896|gb|ABP61043.1| ribonuclease D [Enterobacter sp. 638]
          Length = 384

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 3/173 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R   AIA+DTE +       +L ++Q+  G     I  +  G  +   +  +L++    K
Sbjct: 29  RDFPAIALDTEFVRTRTYYPQLGLIQMYDGKNVSLIDPL--GITDWSPMRELLLNTAITK 86

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             H G  D+ V   TFG+   P+  T+I +  +    +  G    ++E  GI + K++  
Sbjct: 87  YLHAGSEDLEVFLNTFGIMPEPLIDTQILAAFSGRPLS-WGFAAMVEEYTGIALDKSESR 145

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +DW A  L++ QL YAA+DV +L  +  Q  ++ +  G  D A + C     R
Sbjct: 146 TDWLARPLTERQLDYAAADVFYLLPIAGQLMKEAEAAGWLDAALNECRMTQQR 198


>gi|89054329|ref|YP_509780.1| ribonuclease D [Jannaschia sp. CCS1]
 gi|88863878|gb|ABD54755.1| ribonuclease D [Jannaschia sp. CCS1]
          Length = 386

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 7/173 (4%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRI---AAGQKNAP 64
           ++ A CA A     + VDTE L       +LC+VQ++ PG    D + I   A G    P
Sbjct: 10  ELAAYCARAATQPYVTVDTEFLRERTYFAQLCLVQVAMPGTDDTDAVLIDPLAEGLSLEP 69

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  +    K+FH  R D+ + F   G+   P+F T++A+ +   + +Q G +  ++
Sbjct: 70  -LYELFRNVNVVKVFHAARQDLEIFFVEGGLVPTPLFDTQVAA-MVCGFGDQVGYETLVR 127

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            +   N+ K+ + +DWS   LSD Q  YA +DV +L  +    + +L R  R+
Sbjct: 128 RIAKANLDKSSRFTDWSRRPLSDAQKVYALADVTYLREIYEYLSAELARTDRT 180


>gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7]
          Length = 396

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IA+DTE +       RLC+VQ++  D    I  IA    +   L  +L D    K+ H  
Sbjct: 36  IALDTEFVREKTYYPRLCLVQVATPDALACIDPIAL--PDLGPLAALLHDPAVTKVVHAA 93

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ +L  + G    PVF T++A  L   + +Q G    ++  L + + K    +DWS 
Sbjct: 94  HQDMEILLQSTGRVPTPVFDTQVAVSLL-GHGDQIGYARMVQIYLDLELDKGHTRTDWSQ 152

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L   QL+YAA DV HL  +     + L+  GR D
Sbjct: 153 RPLETAQLRYAADDVRHLARVYPMILKDLEEKGRLD 188


>gi|88607542|ref|YP_504762.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
 gi|88598605|gb|ABD44075.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
          Length = 381

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 3/145 (2%)

Query: 21  DAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +++A+DTE L        +LC++Q++  +    I  +A G    P L  +  + +  K+F
Sbjct: 22  ESVAIDTEFLRSFNDYYPKLCLLQIAYENKQCVIDALAEGIDLTP-LQEIFDNTQIFKVF 80

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSS 138
           H  R D+  L   F    RP+F T+IA+ L   + N  G    +++ LG+ ++K   +  
Sbjct: 81  HDCRQDLDALSLLFESLPRPIFDTQIAAMLCEYHENSVGYSKLVEQFLGVKLNKMPFKRV 140

Query: 139 DWSADDLSDEQLQYAASDVVHLHAL 163
           DWS   L++ +++YA  DV++L+ L
Sbjct: 141 DWSKRPLTESEVRYALDDVIYLYKL 165


>gi|84393455|ref|ZP_00992211.1| ribonuclease D [Vibrio splendidus 12B01]
 gi|84375883|gb|EAP92774.1| ribonuclease D [Vibrio splendidus 12B01]
          Length = 313

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 11/163 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE +       +L ++QL  G+ T+ +I   A  +  P  VG+L D    
Sbjct: 44  AREADVVMLDTEFVRTRTYYPQLGLIQLFDGE-TLSLIDPIALDEMTP-FVGLLKDTSVL 101

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132
           K+ H    D+ V    FG    P+  T+I +         HGL       + E +G+++ 
Sbjct: 102 KVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-----GHGLSTGFAALVSEFVGVDLD 156

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           K++  +DW A  LS +QL YAA+DV +L  +  +  EK+   G
Sbjct: 157 KSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAG 199


>gi|218710187|ref|YP_002417808.1| Ribonuclease D [Vibrio splendidus LGP32]
 gi|218323206|emb|CAV19383.1| Ribonuclease D [Vibrio splendidus LGP32]
          Length = 397

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE +       +L ++QL  G+ T+ +I   A  +  P  VG+L D    
Sbjct: 44  AREADVVMLDTEFVRTRTYYPQLGLIQLFDGE-TLSLIDPIALDEMTP-FVGLLKDTSVL 101

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132
           K+ H    D+ V    FG    P+  T+I +         HGL       + E +G+++ 
Sbjct: 102 KVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-----GHGLSTGFAALVSEFVGVDLD 156

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           K++  +DW A  LS +QL YAA+DV +L  +  +  EK+   G  + A
Sbjct: 157 KSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAA 204


>gi|241668633|ref|ZP_04756211.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 364

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 8/180 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHY 81
           IAVDTE   +      LC+VQ++  +   +I  I   +  +   L  +  D   +KI H 
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQIATEN---EIFLIDTLEDLDFSKLKDIFEDTNIQKIIHS 78

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              DI ++   F   V  +F T++A+    T + Q  LK  LK++L I + K  Q SDW 
Sbjct: 79  ATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQS-QISLKALLKDILDIEMEKESQFSDWR 137

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENV 201
              LS +Q  YA  DV HL  ++     K   L ++D        L+D  + +    EN+
Sbjct: 138 KRPLSQKQFDYALKDVEHLIEIKYHLESK---LNQTDYKQYFYEELLDIQKTEFNTVENI 194


>gi|114797633|ref|YP_760953.1| ribonuclease D [Hyphomonas neptunium ATCC 15444]
 gi|114737807|gb|ABI75932.1| ribonuclease D [Hyphomonas neptunium ATCC 15444]
          Length = 388

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 2/174 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE          LC++Q S   G   +I   A   +    + ++  +++ K+FH
Sbjct: 26  DFVCVDTEFHRETTYWPELCLIQAS-APGVEGLIDPRAEDLDIRPFLDLIASDRQLKVFH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI +     G    P+F T++A+ +   + +     + ++ +L  +I K+ Q +DW
Sbjct: 85  AARQDIEIFNRLIGHPPGPIFDTQVAA-MALGFGDSISYDNLIQRVLRKHIDKSSQFTDW 143

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
               LS +QL YA  DV HL    L+  ++L++ GR +        L D A  D
Sbjct: 144 MRRPLSQKQLVYALGDVTHLRDAYLKMRDELEKAGRMNWVREEMAELEDPATYD 197


>gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 366

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 5/152 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHY 81
           IAVDTE   +      LC+VQ++  +   +I  I   +  +   L  +  D   +KI H 
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQIATEN---EIFLIDTLEDLDFSKLKDIFEDTNIQKIIHS 78

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              DI ++   F   V  +F T++A+    T + Q  LK  LK++L I + K  Q SDW 
Sbjct: 79  ATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQS-QISLKALLKDILDIEMEKESQFSDWR 137

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              LS +Q  YA  DV HL  ++     KL +
Sbjct: 138 KRPLSQKQFDYALKDVKHLIEIKYHLESKLNQ 169


>gi|253688324|ref|YP_003017514.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754902|gb|ACT12978.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 374

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 6/180 (3%)

Query: 15  CA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           CA AR    +A+DTE +       +L ++QL  G+  + +I        AP    +L DE
Sbjct: 16  CAQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGE-QLSLIDPLTITDWAP-FQALLRDE 73

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINIS 132
           +  K  H G  D+ V    FG    P   T+I A+ L +  +  +G    + + +G+ + 
Sbjct: 74  QVTKFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPLS--YGFAALVADYMGVTLD 131

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           K++  +DW A  LS++Q  YAA+DV +L  +  Q     +  G  + A   C  L  R +
Sbjct: 132 KSESRTDWLARPLSEKQCDYAAADVFYLLPMAAQLVADTEAAGWMNAALDECLLLCQRKQ 191


>gi|329296338|ref|ZP_08253674.1| ribonuclease D [Plautia stali symbiont]
          Length = 373

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 5/191 (2%)

Query: 7   HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           H   + A C  AR   A+A+DTE +       +L ++QL  G+  V I  +      AP 
Sbjct: 8   HNDQLAAVCQQARQHRAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLTISDW-AP- 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
            + +L D +  K  H G  D+ V  + FG    P+  T+I +       +  G    +  
Sbjct: 66  FIALLQDRQLTKFLHAGGEDLEVFLHRFGCLPEPMIDTQILAAFAGQPLS-WGFAAMVNH 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
              I + K++  +DW A  L++ Q QYAA+DV +L  +  Q   + +  G    A S C 
Sbjct: 125 FNQIELDKSEARTDWLARPLTERQCQYAAADVAYLLPIAHQLVAQTEAAGNMAAALSECA 184

Query: 186 FLMDRAELDLL 196
            L  R  LD+L
Sbjct: 185 TLCQR-RLDVL 194


>gi|86147639|ref|ZP_01065948.1| ribonuclease D [Vibrio sp. MED222]
 gi|85834550|gb|EAQ52699.1| ribonuclease D [Vibrio sp. MED222]
          Length = 397

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE +       +L ++QL  G+ T+ +I   A  +  P  VG+L D    
Sbjct: 44  AREADVVMLDTEFVRTRTYYPQLGLIQLFDGE-TLSLIDPIALDEMTP-FVGLLKDTSVL 101

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132
           K+ H    D+ V    FG    P+  T+I +         HGL       + E +G+++ 
Sbjct: 102 KVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-----GHGLSTGFAALVSEFVGVDLD 156

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           K++  +DW A  LS +QL YAA+DV +L  +  +  EK+   G  + A
Sbjct: 157 KSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKILEKVMEAGWWEAA 204


>gi|307578800|gb|ADN62769.1| ribonuclease D [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 339

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           L +VQ++ GD  + +  +  G  +A  L   L      KI H    D+    Y  GV  R
Sbjct: 15  LALVQIAIGDEILLVDPLVPGMTDALGL--WLAAPNVIKIMHSASEDLIAFKYACGVLPR 72

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
           P+F T+I + LT       G +  + ++  + + K +  SDW    L+  QL YAA+DV 
Sbjct: 73  PLFDTQIGAALTGLGGGM-GYQKLVAKVTNVELGKGETRSDWMHRPLTPAQLDYAANDVR 131

Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           +L AL    TE+L  + RS      C  L D  E
Sbjct: 132 YLFALHDTLTERLAEMSRSAWLEEDCTRLTDNIE 165


>gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 294

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+DTE+      R+R+C++QLS    D  VD I +          +G ++ + RE + H
Sbjct: 35  LALDTESNSFHVYRERVCLLQLSTRTQDFVVDPISVDV------RPLGEILCDGREVVLH 88

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+  L   +G R+  +F T IA+R  R      GL   ++   G+ +SKA Q SDW
Sbjct: 89  GADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVESHFGVRLSKAFQRSDW 146

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
               L+ +QL YAA D   L  L
Sbjct: 147 GRRPLTPDQLAYAALDTHFLLPL 169


>gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21]
 gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21]
          Length = 377

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 8/156 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A D E   L    +++C++Q+S    D  +D +     +  AP    +  +   +KIFH
Sbjct: 35  LAFDLEADSLHHYTEKVCLIQVSSASEDRLIDPLAPIDVKVLAP----IFANPAIKKIFH 90

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+  L+  FG+ V  +F T IAS+      ++ GL   LK+  G+ + K  Q +DW
Sbjct: 91  GADYDMRSLYRDFGIEVVNLFDTMIASQFL--GESEFGLAALLKKRFGVELDKRYQKADW 148

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           S    S E L YA  D   L  L  Q   +L++ GR
Sbjct: 149 SKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGR 184


>gi|146279098|ref|YP_001169257.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025]
 gi|145557339|gb|ABP71952.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025]
          Length = 385

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 4/170 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDG--TVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           + +DTE L       +LC++Q++ PG     V +  + A   +   L  +   E   K+F
Sbjct: 23  VTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPVEAPDMSLEPLYDLFRHEPTVKVF 82

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H  R D+ + F    V   P+F T++A+ +   +  Q G +  +K++    + K  + +D
Sbjct: 83  HAARQDLEIFFVEGRVFPTPLFDTQVAAMVC-GFGEQVGYETLVKKIAREQLDKTSRFTD 141

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           WS   LSD Q  YA +DV HL  +    + ++++ GR          L D
Sbjct: 142 WSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGRQRWVEEELAILTD 191


>gi|295095587|emb|CBK84677.1| ribonuclease D [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 384

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 3/173 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R   AIA+DTE +       +L ++Q+  G   V +I        AP +  +L+D    K
Sbjct: 29  REFPAIALDTEFVRTRTYYPQLGLIQMYDGK-HVSLIDPLGITDWAP-MRELLLDTAVTK 86

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             H G  D+ V   TFG+  +P+  T+I +  +    +  G    ++E  G+ + K++  
Sbjct: 87  YLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFSGRPLS-WGFAAMVEEYTGLTLDKSESR 145

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +DW A  L+  QL+YAA+DV +L  +  Q  ++ +  G    A   C     R
Sbjct: 146 TDWLARPLTARQLEYAAADVFYLLPIAGQLMKEAEASGWLSAALDECRMTQQR 198


>gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
          Length = 381

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A D E   +   ++++C++Q +   G   I+   A    +P L  +  +    K+FH  
Sbjct: 30  VACDLEADSMHHYQEKVCLIQFA-VPGYAAIVDPLAAPDISP-LAPLFANAAIRKVFHGA 87

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +DI  L   FG+ V  +F T IA +L      + GL   L++  G+ + K  Q +DWS 
Sbjct: 88  DYDIRSLHRDFGMEVNNLFDTMIACQLL--GEREFGLAAQLRKRFGVELDKQYQRADWSR 145

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
             L+   ++YA  D   L  L  Q    L+  GR       C  L
Sbjct: 146 RPLTPGMIEYAVKDTTLLIELCWQLATDLEAKGRRGWVEEECELL 190


>gi|13476899|ref|NP_108468.1| ribonuclease D [Mesorhizobium loti MAFF303099]
 gi|14027660|dbj|BAB53929.1| ribonuclease D [Mesorhizobium loti MAFF303099]
          Length = 383

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 2/174 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++   G   +I   +   N      ++ +E   K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPILCLIQMA-APGVTALIDPLSPDINLAPFFRLMANEAVVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++ +   +   PVF T++A+ +   + +       ++ + G  + K+ + +DW
Sbjct: 80  AARQDIEIIVHLGDLVPHPVFDTQVAA-MVCGFGDSVSYDQLVQRITGARLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
               LSD+QL YA +DV HL  +    + +L R  R+       + L  R   D
Sbjct: 139 RHRPLSDKQLDYALADVTHLIEVYQHLSAELARENRAHWLNEEMDVLTSRETYD 192


>gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
 gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
          Length = 288

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+DTE+      R+R+C++QLS    D  VD I +          +G ++ + RE + H
Sbjct: 31  LALDTESNSFHVYRERVCLLQLSTRAQDFVVDPISVDV------RPLGEILCDGREVVLH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+  L   +G R+  +F T IA+R  R      GL   ++   G+ +SKA Q SDW
Sbjct: 85  GADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVEAHFGVRLSKAFQRSDW 142

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
               L+ +QL YAA D   L  L
Sbjct: 143 GRRPLTPDQLAYAALDTHFLLPL 165


>gi|238762951|ref|ZP_04623918.1| Ribonuclease D [Yersinia kristensenii ATCC 33638]
 gi|238698709|gb|EEP91459.1| Ribonuclease D [Yersinia kristensenii ATCC 33638]
          Length = 373

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    +A+DTE +       +L ++QL  G+    +D + I   Q        +L D  
Sbjct: 19  ARTYAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQWQP----FRELLQDLN 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F +   P+  T++ +  + RT +   G    + E  G+ + K
Sbjct: 75  VVKYLHAGSEDLEVFLNAFDIMPTPMIDTQVLAAFSGRTLSC--GFAMLVNEFEGVELDK 132

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDECELLCRR 189


>gi|319784197|ref|YP_004143673.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170085|gb|ADV13623.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 383

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 2/174 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++   G   +I   A   +      ++ +E   K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPILCLIQMA-APGVTALIDPLAPDIDLKPFFRLMANEAVVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++ +   +   PVF T++A+ +   + +       ++ + G  + K+ + +DW
Sbjct: 80  AARQDIEIIVHLGDLVPHPVFDTQVAAMVC-GFGDSVSYDQLVQRITGARLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
               LSD+QL YA +DV HL  +    + +L+R  R+         L  R   D
Sbjct: 139 RHRPLSDKQLDYALADVTHLIEVYQHLSAELERENRAHWLNEEMEVLTSRETYD 192


>gi|56416471|ref|YP_153545.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|56387703|gb|AAV86290.1| ribonuclease D [Anaplasma marginale str. St. Maries]
          Length = 401

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 21  DAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +++A+DTE +        RLC++Q++   G   ++ +   + +   L  +  DE   K+F
Sbjct: 26  ESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLSPLQEIFDDEGIYKVF 84

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSS 138
           H  R D+  L   F    RP+F T+ AS L   + N  G    +++ LG+ ++K   +  
Sbjct: 85  HDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRV 144

Query: 139 DWSADDLSDEQLQYAASDVVHLHAL 163
           DWS   LS+ +++YA  DV +LH L
Sbjct: 145 DWSHRPLSEGKVRYALDDVTYLHEL 169


>gi|332557401|ref|ZP_08411723.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
 gi|332275113|gb|EGJ20428.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
          Length = 385

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 6/193 (3%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG--TVDIIRI 56
           M TI   E  + A C AA+    + +DTE L       +LC++Q++ PG     V +  I
Sbjct: 1   MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPI 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                +   L  +   E   K+FH  R D+ + F        P+F T++A+ +   +  Q
Sbjct: 60  EGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +K++    + K  + +DWS   LSD Q  YA +DV HL  +    + ++++ GR
Sbjct: 119 VGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGR 178

Query: 177 SDLATSCCNFLMD 189
                     L D
Sbjct: 179 QKWVEEELAILTD 191


>gi|260913969|ref|ZP_05920443.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
 gi|260632056|gb|EEX50233.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
          Length = 383

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 3/176 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+    +A+DTE + +     +L ++QL  G+  V +I   + Q  +P  + +L ++   
Sbjct: 30  AQQKSVVALDTEFVRIRTLYPQLGLIQLYDGE-RVSLIDPLSIQDFSP-FIALLANQNVL 87

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  + +     P+  T+I +    ++ N  GL   ++    + I K   
Sbjct: 88  KVLHACSEDLEVFQHYYQQMPTPMIDTQIMASFL-SFPNSTGLATLIQHYFQLEIDKGAS 146

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            +DW A  LSD+QL YAA+DV +L  L  +  + LQ+        + C  L+ + E
Sbjct: 147 RTDWLARPLSDKQLVYAAADVWYLLPLYQRMQQDLQQTPWQSAVENDCEMLLAKRE 202


>gi|162452521|ref|YP_001614888.1| hypothetical protein sce4245 [Sorangium cellulosum 'So ce 56']
 gi|161163103|emb|CAN94408.1| rnd [Sorangium cellulosum 'So ce 56']
          Length = 403

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 76/173 (43%), Gaps = 14/173 (8%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLS--PGDGT----VDIIRIAAGQKNAPNLVGMLVDE 73
            DA+AVD E  GL   R RLC VQL+   GDG     VD +R+      AP L  +L   
Sbjct: 25  ADALAVDVEANGLFVYRPRLCTVQLAFREGDGIAVGIVDALRVPV----AP-LARLLGAA 79

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              K+ H   FD A +    G  +     T +A+R+        GL   L   L + + K
Sbjct: 80  GPPKVLHDLTFD-ARMLAEAGAPLGGAHDTSVAARMLGCAAT--GLGALLLSELDVKVDK 136

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
             Q  DW    + D +L+Y A DV HL  LR +  E+   LG  +     C +
Sbjct: 137 QLQQHDWGRRPIEDAELRYLADDVRHLLPLRARLAERSGALGIDEEIEEECAY 189


>gi|221638369|ref|YP_002524631.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
 gi|221159150|gb|ACM00130.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
          Length = 385

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 6/193 (3%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG--TVDIIRI 56
           M TI   E  + A C AA+    + +DTE L       +LC++Q++ PG     V +  I
Sbjct: 1   MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPI 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                +   L  +   E   K+FH  R D+ + F        P+F T++A+ +   +  Q
Sbjct: 60  EGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +K++    + K  + +DWS   LSD Q  YA +DV HL  +    + ++++ GR
Sbjct: 119 VGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGR 178

Query: 177 SDLATSCCNFLMD 189
                     L D
Sbjct: 179 QKWVEEELAILTD 191


>gi|77462516|ref|YP_352020.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|126461450|ref|YP_001042564.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
 gi|77386934|gb|ABA78119.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|126103114|gb|ABN75792.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
          Length = 385

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 6/193 (3%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDG--TVDIIRI 56
           M TI   E  + A C AA+    + +DTE L       +LC++Q++ PG     V +  I
Sbjct: 1   MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPI 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                +   L  +   E   K+FH  R D+ + F        P+F T++A+ +   +  Q
Sbjct: 60  EGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +K++    + K  + +DWS   LSD Q  YA +DV HL  +    + ++++ GR
Sbjct: 119 VGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGR 178

Query: 177 SDLATSCCNFLMD 189
                     L D
Sbjct: 179 QKWVEEELAILTD 191


>gi|254492081|ref|ZP_05105256.1| ribonuclease D [Methylophaga thiooxidans DMS010]
 gi|224462633|gb|EEF78907.1| ribonuclease D [Methylophaga thiooxydans DMS010]
          Length = 379

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 7/156 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+DTE         +LC++Q++  D    VD ++I     +   L+ +        +FH
Sbjct: 25  LAIDTEFHREKTYYPQLCLIQVANDDVIACVDPLKI----DDLSPLMDVFYRTDMTLVFH 80

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ +LF       + VF T++A+ +   Y +Q G  + +K+ L +++ KA   +DW
Sbjct: 81  AARQDLELLFLLRDALPQQVFDTQLAATVL-GYGDQIGYGNLVKQCLNVDLDKAHARTDW 139

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
               LS EQ+ YAA DV +L  L  Q   KL   GR
Sbjct: 140 RQRPLSPEQIDYAADDVRYLRELYHQLEAKLVDTGR 175


>gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem]
 gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem]
          Length = 377

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 8/156 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A D E   L    +++C++Q+S    D  +D +     +  AP    +  +   +KIFH
Sbjct: 35  LAFDLEADSLHHYTEKVCLIQVSSTSEDRLIDPLAPIDVKVLAP----IFANPAIKKIFH 90

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+  L+  FG+ V  +F T IAS+      ++ GL   LK+  G+ + K  Q +DW
Sbjct: 91  GADYDMRSLYRDFGIEVVNLFDTMIASQFL--GESEFGLAALLKKRFGVELDKRYQKADW 148

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           S    S E L YA  D   L  L  Q   +L++ GR
Sbjct: 149 SKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGR 184


>gi|222474840|ref|YP_002563255.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
 gi|222418976|gb|ACM48999.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
          Length = 386

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 21  DAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +++A+DTE +        RLC++Q++   G   ++ +   + +   L  +  DE   K+F
Sbjct: 26  ESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLSPLQEIFDDEGIYKVF 84

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSS 138
           H  R D+  L   F    RP+F T+ AS L   + N  G    +++ LG+ ++K   +  
Sbjct: 85  HDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRV 144

Query: 139 DWSADDLSDEQLQYAASDVVHLHAL 163
           DWS   LS+ +++YA  DV +LH L
Sbjct: 145 DWSHRPLSEGKVRYALDDVTYLHEL 169


>gi|296101862|ref|YP_003612008.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056321|gb|ADF61059.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 384

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 3/173 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R   AIA+DTE +       +L ++Q+  G     I  +  G  +   +  +L+D    K
Sbjct: 29  RDFPAIALDTEFVRTRTYYPQLGLIQMYDGKHVSLIDPL--GITDWTPMRDLLLDTAVTK 86

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             H G  D+ V   TFG+  +P+  T+I +  +    +  G    ++E  G+ + K++  
Sbjct: 87  YLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFSNRPLS-WGFAAMVEEYTGLTLDKSESR 145

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +DW A  L++ QL YAA+DV +L  +  Q  ++ +  G    A   C     R
Sbjct: 146 TDWLARPLTERQLDYAAADVFYLLPIAGQLMKEAEASGWLPAALDECRMTQQR 198


>gi|254994696|ref|ZP_05276886.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
          Length = 386

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 21  DAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +++A+DTE +        RLC++Q++   G   ++ +   + +   L  +  DE   K+F
Sbjct: 26  ESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLSPLQEIFDDEGIYKVF 84

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSS 138
           H  R D+  L   F    RP+F T+ AS L   + N  G    +++ LG+ ++K   +  
Sbjct: 85  HDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRV 144

Query: 139 DWSADDLSDEQLQYAASDVVHLHAL 163
           DWS   LS+ +++YA  DV +LH L
Sbjct: 145 DWSHRPLSEGKVRYALDDVTYLHEL 169


>gi|149191139|ref|ZP_01869398.1| ribonuclease D [Vibrio shilonii AK1]
 gi|148835067|gb|EDL52045.1| ribonuclease D [Vibrio shilonii AK1]
          Length = 289

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 15/180 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR  D + +DTE + +     +L ++QL  G+    +D + I+    +    + +L D  
Sbjct: 19  ARESDVVMLDTEFVRIRTFYPKLGLIQLYDGEQLSLIDPLTIS----DFTPFIELLQDAS 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK----ELLGIN 130
             K+ H    D+ V   +FG    P+  T+I +         HGL         E LG+ 
Sbjct: 75  VLKVLHACGEDLEVFVNSFGCMPFPMVDTQIMAAFL-----GHGLSTGFAALVDEYLGVE 129

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           + K++  +DW A  L+D+QL YAA+DV +L  L  +   +++     D A    + LM +
Sbjct: 130 LDKSESRADWVARPLTDKQLDYAAADVYYLWPLYFKLFAQVEAKDWWDAAQQESDLLMQK 189


>gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva]
          Length = 1786

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 23/196 (11%)

Query: 22   AIAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRIAAGQKNAPNLV----------- 67
            A+ VD ET GL    +++ +VQLS P   +  +D+ +++    +A ++V           
Sbjct: 1221 AVGVDIETTGLDHNTNQIRLVQLSVPNQPSLIIDLFKLSTNNPDAESVVPGRNELIKCEW 1280

Query: 68   --GMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRL---TRTYTNQHGLKD 121
               +   ++  K+FH G+FDI  L   +G     P+F T +AS+L   +R  + +  L  
Sbjct: 1281 LKKLFKSKETVKVFHNGKFDINFL-RVYGFEFEGPIFDTMVASKLLVASRYISCK--LTH 1337

Query: 122  NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
              +  L I + K QQ SDWS   L +EQL Y+A D   L  L +     L+    SD+A+
Sbjct: 1338 VSERYLNIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLYVILEHLLKINNLSDIAS 1397

Query: 182  SCCNFLMDRAELDLLG 197
                 ++  ++++L G
Sbjct: 1398 VENKCILATSDMELNG 1413


>gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523]
          Length = 364

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 11/153 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE   +      LC+VQ++  +    +D ++     K    L  +  ++  +KI H
Sbjct: 22  IAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLKDLDFSK----LKDIFENKDIQKIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I + K  Q SDW
Sbjct: 78  SATNDIPIIKRFFNCEVNNIFDTQLAAAFL-GFQTQSSLKTLLKEILDIEMEKESQFSDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
               L+ +QL YA  DV +L    +Q  E LQ+
Sbjct: 137 RNRPLTQKQLNYAIKDVEYL----IQLKEYLQQ 165


>gi|242239440|ref|YP_002987621.1| ribonuclease D [Dickeya dadantii Ech703]
 gi|242131497|gb|ACS85799.1| ribonuclease D [Dickeya dadantii Ech703]
          Length = 403

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 9/179 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR +  +A+DTE +       +L ++QL  G+    +D + I   Q        +L+D  
Sbjct: 48  ARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLSITVWQP----FCDLLLDPA 103

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    FG+   P   T+I  + L +  +  +G    + + + + + K
Sbjct: 104 VTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPLS--YGFAALVADYMQVTLDK 161

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           ++  +DW A  LS++Q QYAA+DV +L  + ++  E+    G  + A   C  L  R +
Sbjct: 162 SESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWEAALDECRQLCQRKQ 220


>gi|323137715|ref|ZP_08072791.1| ribonuclease D [Methylocystis sp. ATCC 49242]
 gi|322397012|gb|EFX99537.1| ribonuclease D [Methylocystis sp. ATCC 49242]
          Length = 393

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE L       ++C++Q++  +  V I  ++ G    P    ++ +    K+FH  
Sbjct: 23  VTVDTEFLRETTFWPKVCVIQIASPEEAVAIDALSEGIDLTP-FFSLMANADVVKVFHAA 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ +++    +   P+F T++A+ +   +  Q    + +K +   N+ K+ + +DWS 
Sbjct: 82  RQDLEIIWRLARLIPAPLFDTQVAAMVC-GFGEQASYLELVKAITRANLDKSSRFTDWSR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             LS  Q+ YA +DV HL  +     ++L+R  R
Sbjct: 141 RPLSAAQIDYAIADVTHLRDIYTTLRQRLERSNR 174


>gi|283781120|ref|YP_003371875.1| 3'-5' exonuclease [Pirellula staleyi DSM 6068]
 gi|283439573|gb|ADB18015.1| 3'-5' exonuclease [Pirellula staleyi DSM 6068]
          Length = 399

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 5/158 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            + IA DTE +     +  LC++Q++  DG + II     Q  +P    +L +  RE + 
Sbjct: 22  AEIIAFDTEFVSEDSYQPELCLIQVA-ADGNLAIIDPLEVQDLSP-FWNLLTEPGRETLV 79

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSS 138
           H GR +    F   G R    F  +IA+ L    +   +G     + L+G ++ K +  +
Sbjct: 80  HAGREEFRFCFKGAGRRPHKWFDVQIAAGLIGMEFPASYGTL--AQRLIGKSLPKDETRT 137

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           DW    LS  QL+YA  DV+ L  +R     KL++LGR
Sbjct: 138 DWRRRPLSQRQLEYALLDVLDLEQIRDVLVGKLEKLGR 175


>gi|304391965|ref|ZP_07373907.1| ribonuclease D [Ahrensia sp. R2A130]
 gi|303296194|gb|EFL90552.1| ribonuclease D [Ahrensia sp. R2A130]
          Length = 383

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 2/175 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE L        LC++Q++  D    +  +A G    P    ++ D    K+FH
Sbjct: 21  DYVTVDTEFLRETTFWPILCLIQIAGPDDECIVDPMADGIDLQP-FFELMADTSVVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ ++++  G+  +P+F T++A+ +   Y +       +  + G  I K+ + +DW
Sbjct: 80  AARQDVEIVYHLGGLVPKPLFDTQVAAMVC-GYGDSVAYNALVSRITGGVIDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           +   L+ +QL YA +DV HL  +       L++  R        + L +    DL
Sbjct: 139 ARRPLTTKQLDYALADVTHLRDVYQSLKADLEKKNRKHWVDEEMDVLTNPETYDL 193


>gi|71901132|ref|ZP_00683238.1| Ribonuclease D [Xylella fastidiosa Ann-1]
 gi|71729096|gb|EAO31221.1| Ribonuclease D [Xylella fastidiosa Ann-1]
          Length = 362

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 3/187 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +   D  A    R    I +DTE +        L +VQ++  D  + +  +  G  +A  
Sbjct: 5   IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      KI H    D+    Y  GV  RP+F T+I + LT       G +  + +
Sbjct: 65  L--WLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGM-GYQKLVTK 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  + + K +  SDW    L+  QL YAA+DV +L AL    TE+L  + RS      C 
Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181

Query: 186 FLMDRAE 192
            L D  E
Sbjct: 182 RLTDNIE 188


>gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 288

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+DTE+      R+R+C++QLS    D  VD I +          +G ++ + RE + H
Sbjct: 31  LALDTESNSFHVYRERVCLLQLSTRAQDFVVDPISVDV------RPLGEILCDGREVVLH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+  L   +G R+  +F T IA+R  R      GL   ++   G+ +SKA Q SDW
Sbjct: 85  GADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVEAHFGVRLSKAFQRSDW 142

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
               L+ +QL YA+ D   L  L
Sbjct: 143 GRRPLTPDQLAYASLDTHFLLPL 165


>gi|115372643|ref|ZP_01459950.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
 gi|115370364|gb|EAU69292.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
          Length = 379

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           +AVD E   +   R RLC +Q+ +P D  + +    A   +A  L  ++ D +R K FH 
Sbjct: 20  LAVDLEADSMHAFRARLCFLQVATPTD--IFLFDTLAPGVDASLLAPLMADPERTKYFHA 77

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            + D+  L    G+RVR +F T  A+ L      + GL D  +E LG+ + K  Q SD+S
Sbjct: 78  AQGDLQFLAEA-GIRVRGLFDTHRAATLL--GWPKVGLADIARERLGVELPKEHQQSDFS 134

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
              L  E  +Y A+DV +L  L  Q  E  +  G
Sbjct: 135 LRPLPPEMREYIANDVRYLCELGRQVREACRTAG 168


>gi|121601718|ref|YP_989156.1| ribonuclease D [Bartonella bacilliformis KC583]
 gi|120613895|gb|ABM44496.1| ribonuclease D [Bartonella bacilliformis KC583]
          Length = 391

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 14/165 (8%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R  D + VDTE +       +LC++QL+  + T  I  +       P    +++D+   K
Sbjct: 18  RNSDFVTVDTEFIRETTFWPQLCLIQLASPNSTALIDPMVPDIDLQP-FFDLMIDKNIVK 76

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK------ELLGINI 131
           +FH  R DI ++++   +   P+F T+IA  +        G  D++          G ++
Sbjct: 77  VFHAARQDIEIIYHLGRIIPFPLFDTQIAGAIC-------GFGDSISYDQIVYHCTGQHL 129

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            K+ + +DWS   LS++Q+ YA +DV +L  + L   ++L+   R
Sbjct: 130 DKSSRFTDWSCRPLSEKQILYALADVTYLRDVYLSLKKQLEESKR 174


>gi|254502050|ref|ZP_05114201.1| ribonuclease D [Labrenzia alexandrii DFL-11]
 gi|222438121|gb|EEE44800.1| ribonuclease D [Labrenzia alexandrii DFL-11]
          Length = 392

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 2/141 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE L       +LC++Q++  +    +  +A G    P    ++ D+   K+FH
Sbjct: 21  DYVTVDTEFLRETTFWPKLCVIQMAGTEMAFIVDALAEGLDLEP-FFDLMRDDSVTKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++++  G+   P+F T++A+ +   + +       + ++ G  I K+ + +DW
Sbjct: 80  AARQDIEIIYHLGGLIPAPLFDTQVAA-MVCGFGDSISYDQLVYKVTGARIDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLH 161
           +   L+ +QL YA +DV HL 
Sbjct: 139 ARRPLTAKQLDYALADVTHLR 159


>gi|310823888|ref|YP_003956246.1| ribonuclease d [Stigmatella aurantiaca DW4/3-1]
 gi|309396960|gb|ADO74419.1| ribonuclease D [Stigmatella aurantiaca DW4/3-1]
          Length = 389

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           +AVD E   +   R RLC +Q+ +P D  + +    A   +A  L  ++ D +R K FH 
Sbjct: 30  LAVDLEADSMHAFRARLCFLQVATPTD--IFLFDTLAPGVDASLLAPLMADPERTKYFHA 87

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            + D+  L    G+RVR +F T  A+ L      + GL D  +E LG+ + K  Q SD+S
Sbjct: 88  AQGDLQFLAEA-GIRVRGLFDTHRAATLL--GWPKVGLADIARERLGVELPKEHQQSDFS 144

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
              L  E  +Y A+DV +L  L  Q  E  +  G
Sbjct: 145 LRPLPPEMREYIANDVRYLCELGRQVREACRTAG 178


>gi|288549752|ref|ZP_05968046.2| ribonuclease D [Enterobacter cancerogenus ATCC 35316]
 gi|288317705|gb|EFC56643.1| ribonuclease D [Enterobacter cancerogenus ATCC 35316]
          Length = 384

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 3/173 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R   AIA+DTE +       +L ++Q+  G   V +I    G  +   +  +L+D    K
Sbjct: 29  RDFPAIALDTEFVRTRTYYPQLGLIQMYDGK-RVSLID-PLGITDWTPMRDLLLDTAVTK 86

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             H G  D+ V   TFG+  +P+  T+I +  +    +  G    ++E  G+ + K++  
Sbjct: 87  YLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFSNRPLS-WGFAAMVEEYTGLTLDKSESR 145

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +DW A  L+  QL+YAA+DV +L  +  Q  ++ +  G    A   C     R
Sbjct: 146 TDWLARPLTARQLEYAAADVFYLLPIAGQLMKESEASGWLSAALDECRMAQQR 198


>gi|315180685|gb|ADT87599.1| ribonuclease D [Vibrio furnissii NCTC 11218]
          Length = 371

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 3/159 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE +       +L ++QL  G+  + +I   A  +  P  V +L D    
Sbjct: 19  ARDADVVMLDTEFVRTRTFYPQLGLIQLFDGEN-LSLIDPLAMDEMTP-FVELLQDTSVL 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI V   +FG    P+  T+I +     Y    G      +LL + + K++ 
Sbjct: 77  KVLHACGEDIEVFKTSFGCVPFPMVDTQIMAAFL-GYGLSTGFAALAHDLLNVELDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +DW A  LS +QL+YAA+DV +L  +  Q  EK+ + G
Sbjct: 136 RTDWLARPLSQKQLEYAAADVFYLMPMYEQLLEKVTQAG 174


>gi|153823321|ref|ZP_01975988.1| ribonuclease D [Vibrio cholerae B33]
 gi|126519155|gb|EAZ76378.1| ribonuclease D [Vibrio cholerae B33]
          Length = 246

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 10  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 67

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 68  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 126

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 127 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAA 179


>gi|260768989|ref|ZP_05877923.1| ribonuclease D [Vibrio furnissii CIP 102972]
 gi|260617019|gb|EEX42204.1| ribonuclease D [Vibrio furnissii CIP 102972]
          Length = 397

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 3/164 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE +       +L ++QL  G+  + +I   A  +  P  V +L D    
Sbjct: 45  ARDADVVMLDTEFVRTRTFYPQLGLIQLFDGEN-LSLIDPLAMDEMTP-FVELLQDTSVL 102

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI V   +FG    P+  T+I +     Y    G      +LL + + K++ 
Sbjct: 103 KVLHACGEDIEVFKTSFGCVPFPMVDTQIMAAFL-GYGLSTGFAALAHDLLNVELDKSES 161

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            +DW A  LS +QL+YAA+DV +L  +  Q  EK+ + G  + A
Sbjct: 162 RTDWLARPLSQKQLEYAAADVFYLMPMYEQLLEKVTQAGWWEAA 205


>gi|15837353|ref|NP_298041.1| ribonuclease D [Xylella fastidiosa 9a5c]
 gi|9105641|gb|AAF83561.1|AE003916_15 ribonuclease D [Xylella fastidiosa 9a5c]
          Length = 362

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 3/187 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +   D  A    R    I +DTE +        L +VQ++  D  + +  +  G  +A  
Sbjct: 5   IQHPDTLATWWDRKPTRIGMDTEFIRERTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      KI H    D+    Y  GV  RP+F T+I + LT       G +  +  
Sbjct: 65  L--WLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGM-GYQKLVAT 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  + + K +  SDW    L+  QL YAA+DV +L AL    TE+L  + RS      C 
Sbjct: 122 VTNVALEKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181

Query: 186 FLMDRAE 192
            L D  E
Sbjct: 182 RLTDNIE 188


>gi|227327782|ref|ZP_03831806.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 374

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 5/177 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+  + +I        AP    +L DE+  
Sbjct: 19  ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGE-QLSLIDPLTITDWAP-FQALLRDEQVT 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           K  H G  D+ V    F     P   T+I A+ L +  +  +G    + + +G+ + K++
Sbjct: 77  KFLHAGSEDLEVFLNAFETLPTPFIDTQILAAFLGKPLS--YGFAALVADYMGVTLDKSE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
             +DW A  LS++Q  YAA+DV +L  + +Q     +  G  + A   C  L  R +
Sbjct: 135 SRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWMNAALDECLLLCQRKQ 191


>gi|15602571|ref|NP_245643.1| ribonuclease D [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720994|gb|AAK02790.1| Rnd [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 383

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +A+    IA+DTE + +     +L ++QL  G+  V +I     Q  +P  + +L +   
Sbjct: 29  SAQQKAVIALDTEFVRIKTLYPQLGLIQLYDGE-RVSLIDPTTIQDFSP-FIALLANTAV 86

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    D+ V  ++F     P+  T+I +     + N  GL   ++    + I K  
Sbjct: 87  LKVLHACSEDLEVFQHSFNQLPTPMLDTQIMANFL-GFPNSTGLATLVQHYFQLEIDKGA 145

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
             +DW A  LSD QL YAA+DV +L  L  +  E L +    + A   C  L+ + E
Sbjct: 146 SRTDWLARPLSDNQLIYAAADVWYLLPLYQRMQEALAQTRWQEAAQQDCEALLLKRE 202


>gi|238794476|ref|ZP_04638085.1| Ribonuclease D [Yersinia intermedia ATCC 29909]
 gi|238726159|gb|EEQ17704.1| Ribonuclease D [Yersinia intermedia ATCC 29909]
          Length = 373

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    +A+DTE +       +L ++QL  G+    +D + I   Q        +L D  
Sbjct: 19  ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FSELLQDLN 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F     P+  T+I +  + RT +   G    + E  G+ + K
Sbjct: 75  VVKYLHAGSEDLEVFLNAFSRMPTPMIDTQILAAFSGRTLSC--GFAMLVNEFEGVELDK 132

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECQLLCRR 189


>gi|317048442|ref|YP_004116090.1| ribonuclease D [Pantoea sp. At-9b]
 gi|316950059|gb|ADU69534.1| ribonuclease D [Pantoea sp. At-9b]
          Length = 373

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 8/186 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEK 74
           AR   A+A+DTE +       +L ++QL  G+  V  D + I+     AP  V +L D +
Sbjct: 19  ARQHSAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLNIS---DWAP-FVALLRDTQ 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K  H G  D+ V  + FG    P+  T+I +       +  G    +     I + K+
Sbjct: 75  VTKFLHAGGEDLEVFLHRFGCLPDPMVDTQILAAFAGQPLSW-GFAAMVMHFNQIELDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
           +  +DW A  L+  Q +YAA+DV +L  +  Q   + +  G    A S C+ L  R  LD
Sbjct: 134 EARTDWLARPLTARQCEYAAADVAYLLPIAHQLVAQTEAAGHMAAALSECDILCQR-RLD 192

Query: 195 LLGWEN 200
           +L  E+
Sbjct: 193 VLAPED 198


>gi|153217090|ref|ZP_01950854.1| ribonuclease D [Vibrio cholerae 1587]
 gi|124113892|gb|EAY32712.1| ribonuclease D [Vibrio cholerae 1587]
          Length = 381

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 18  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 76  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187


>gi|153801848|ref|ZP_01956434.1| ribonuclease D [Vibrio cholerae MZO-3]
 gi|153829828|ref|ZP_01982495.1| ribonuclease D [Vibrio cholerae 623-39]
 gi|229515363|ref|ZP_04404823.1| ribonuclease D [Vibrio cholerae TMA 21]
 gi|229528995|ref|ZP_04418385.1| ribonuclease D [Vibrio cholerae 12129(1)]
 gi|124122620|gb|EAY41363.1| ribonuclease D [Vibrio cholerae MZO-3]
 gi|148874687|gb|EDL72822.1| ribonuclease D [Vibrio cholerae 623-39]
 gi|229332769|gb|EEN98255.1| ribonuclease D [Vibrio cholerae 12129(1)]
 gi|229348068|gb|EEO13027.1| ribonuclease D [Vibrio cholerae TMA 21]
          Length = 381

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 18  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 76  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187


>gi|238756989|ref|ZP_04618177.1| Ribonuclease D [Yersinia aldovae ATCC 35236]
 gi|238704819|gb|EEP97348.1| Ribonuclease D [Yersinia aldovae ATCC 35236]
          Length = 373

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    +A+DTE +       +L ++QL  G+    +D + I   Q        +L D  
Sbjct: 19  ARTHTHVALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLPITQWQP----FRALLQDLS 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F     P+  T++ +  + RT +   G    + E  GI + K
Sbjct: 75  VVKYLHAGSEDLEVFLNAFEQMPTPMIDTQVLAAFSGRTLSC--GFAMLVNEFEGIELDK 132

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECELLCRR 189


>gi|183599025|ref|ZP_02960518.1| hypothetical protein PROSTU_02469 [Providencia stuartii ATCC 25827]
 gi|188021240|gb|EDU59280.1| hypothetical protein PROSTU_02469 [Providencia stuartii ATCC 25827]
          Length = 374

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A   D +A+DTE +       +L ++QL  G   V +I   +    +P    +L ++   
Sbjct: 19  ASEADWLALDTEFVRTRTYYPQLGLLQLYDGK-QVSLIDPLSISDFSP-FKALLTNKSLT 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V  + F     P+  T++ +     Y    G    + E LGI + K++ 
Sbjct: 77  KFLHAGSEDLEVFLHDFECVPEPMVDTQVIAAFL-GYPISCGFASLVSEYLGIELDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q QYA +DV++L  L     +K++  G    A   C   ++R
Sbjct: 136 RTDWLARPLSEKQCQYATADVLYLLPLAKILMQKVEESGYLSAALEECQRTVER 189


>gi|153826834|ref|ZP_01979501.1| ribonuclease D [Vibrio cholerae MZO-2]
 gi|149739355|gb|EDM53601.1| ribonuclease D [Vibrio cholerae MZO-2]
          Length = 381

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 18  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 76  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187


>gi|229521896|ref|ZP_04411313.1| ribonuclease D [Vibrio cholerae TM 11079-80]
 gi|229340821|gb|EEO05826.1| ribonuclease D [Vibrio cholerae TM 11079-80]
          Length = 381

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 18  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 76  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187


>gi|119775068|ref|YP_927808.1| ribonuclease D [Shewanella amazonensis SB2B]
 gi|119767568|gb|ABM00139.1| ribonuclease D [Shewanella amazonensis SB2B]
          Length = 371

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 11/160 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + +DTE +       +L ++Q+  G+    +D + I    ++      +L +    K+ H
Sbjct: 26  LVLDTEFVRTRTYYAKLGLIQVYDGNTLALIDPLDI----QDLSGFWALLTNPNILKLVH 81

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISKAQQSS 138
               D+ V      V+  P+F ++IA+ L+      HGL     ++E LG  + K +  +
Sbjct: 82  SCSEDLEVFARYGKVQPTPLFDSQIAAALSGM---GHGLGYAKLVEECLGQTLDKGESRT 138

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           DW    L+D QLQYAA+DV +L+ L  Q  +KL+ LGR D
Sbjct: 139 DWIKRPLTDAQLQYAANDVFYLYQLYPQLEQKLKTLGRFD 178


>gi|297579488|ref|ZP_06941416.1| ribonuclease D [Vibrio cholerae RC385]
 gi|297537082|gb|EFH75915.1| ribonuclease D [Vibrio cholerae RC385]
          Length = 381

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 18  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 76  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187


>gi|332161539|ref|YP_004298116.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318605521|emb|CBY27019.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325665769|gb|ADZ42413.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 373

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    +A+DTE +       +L ++QL  G+    +D + I   Q        +L D  
Sbjct: 19  ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEKLSLIDPLPITQWQP----FRELLQDVS 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F +   P+  T++ +  + R+ +   G    + EL G+ + K
Sbjct: 75  VVKYLHAGSEDLEVFLNAFELMPTPMIDTQVLAAFSGRSLSC--GFAMLVNELEGVELDK 132

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLASKLVEATEAAGRMDAAKDECELLCRR 189


>gi|114768885|ref|ZP_01446511.1| ribonuclease D [alpha proteobacterium HTCC2255]
 gi|114549802|gb|EAU52683.1| ribonuclease D [alpha proteobacterium HTCC2255]
          Length = 386

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 8/184 (4%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PG---DGTVDIIRIAAGQKNAPN 65
           D   +C+A   + + +DTE L       +LC+VQ++ PG   D  V I  ++      P 
Sbjct: 12  DFCKKCSA--YEYVTLDTEFLRERTYYSKLCLVQMAHPGNTEDSAVLIDPLSPDLSLDP- 68

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +  +    K+FH  R D+ + F    +   P F T++A+ +   +  Q G +  ++ 
Sbjct: 69  LYELFKNPNVVKVFHAARQDLEIFFIDKKIIPFPFFDTQVAAMVC-GFGEQVGYEKLVRS 127

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +    + K+ + +DWSA  LS++Q+ YA  DV +L  +    + K++   R         
Sbjct: 128 ICNEGLDKSSRFTDWSARPLSNKQMHYAIGDVTYLREIYEFLSNKIKNNKRQAWVEEELK 187

Query: 186 FLMD 189
            LMD
Sbjct: 188 ILMD 191


>gi|319948476|ref|ZP_08022610.1| 3'-5' exonuclease [Dietzia cinnamea P4]
 gi|319437843|gb|EFV92829.1| 3'-5' exonuclease [Dietzia cinnamea P4]
          Length = 412

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 7/170 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           + IAVD E    +   +R  ++QL  PG+  + +     G+   P L  +L   +R  +F
Sbjct: 41  EPIAVDVERASGIRYSERAFLLQLRVPGEPALLVDPETPGRTVGP-LATVL--SQRPLLF 97

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+R   +  T++A R       +  L   + E LGI ++KA  ++D
Sbjct: 98  HAASQDLPSL-RELGIRPTALVDTELAGRFL--GIERVNLGAMISEHLGIGLAKAHSAAD 154

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           WS   L    L YAA DV+ LH L  +   +L  LGR +   + C  L+D
Sbjct: 155 WSRRPLPAAWLDYAAYDVLFLHELADEVLPRLDALGRREWFEAECRHLVD 204


>gi|329122266|ref|ZP_08250854.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
 gi|327473827|gb|EGF19244.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
          Length = 399

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  V +L + K  
Sbjct: 46  AQMKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLSNPKVL 103

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R     T+  GL    ++ L I I K   
Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNIEIDKGAT 162

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 163 RTNWIKRPLSDIQLQYAAGDVWYLLPL 189


>gi|319898087|ref|YP_004136284.1| ribonuclease d [Haemophilus influenzae F3031]
 gi|317433593|emb|CBY81977.1| ribonuclease D [Haemophilus influenzae F3031]
          Length = 380

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  V +L + K  
Sbjct: 27  AQMKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLSNPKVL 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R     T+  GL    ++ L I I K   
Sbjct: 85  KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNIEIDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170


>gi|293395838|ref|ZP_06640120.1| ribonuclease D [Serratia odorifera DSM 4582]
 gi|291421775|gb|EFE95022.1| ribonuclease D [Serratia odorifera DSM 4582]
          Length = 373

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 7/176 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    IA+DTE +       +L ++QL  G+    +D + I   Q      V +L D  
Sbjct: 19  ARKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQWQP----FVDLLADSA 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K  H G  D+ V    F     P+  T+I +  T    +  G    + + + + + K+
Sbjct: 75  VVKFLHAGSEDLEVFLNAFNTLPTPLVDTQILAAFTGKPLS-CGFATLVAQYMQVELDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q  YAA+DV +L  +  Q  ++ ++ G +  A+S C  L  R
Sbjct: 134 ESRTDWLARPLTERQCVYAAADVFYLLPMARQLVQETEQAGWTAAASSECLLLCQR 189


>gi|15641986|ref|NP_231618.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591319|ref|ZP_01678609.1| ribonuclease D [Vibrio cholerae 2740-80]
 gi|147675516|ref|YP_001217510.1| ribonuclease D [Vibrio cholerae O395]
 gi|153819311|ref|ZP_01971978.1| ribonuclease D [Vibrio cholerae NCTC 8457]
 gi|227082111|ref|YP_002810662.1| ribonuclease D [Vibrio cholerae M66-2]
 gi|229507927|ref|ZP_04397432.1| ribonuclease D [Vibrio cholerae BX 330286]
 gi|229511838|ref|ZP_04401317.1| ribonuclease D [Vibrio cholerae B33]
 gi|229518974|ref|ZP_04408417.1| ribonuclease D [Vibrio cholerae RC9]
 gi|229607472|ref|YP_002878120.1| ribonuclease D [Vibrio cholerae MJ-1236]
 gi|254849070|ref|ZP_05238420.1| ribonuclease D [Vibrio cholerae MO10]
 gi|298497984|ref|ZP_07007791.1| ribonuclease D [Vibrio cholerae MAK 757]
 gi|9656525|gb|AAF95132.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121546819|gb|EAX56983.1| ribonuclease D [Vibrio cholerae 2740-80]
 gi|126510131|gb|EAZ72725.1| ribonuclease D [Vibrio cholerae NCTC 8457]
 gi|146317399|gb|ABQ21938.1| ribonuclease D [Vibrio cholerae O395]
 gi|227009999|gb|ACP06211.1| ribonuclease D [Vibrio cholerae M66-2]
 gi|227013881|gb|ACP10091.1| ribonuclease D [Vibrio cholerae O395]
 gi|229343663|gb|EEO08638.1| ribonuclease D [Vibrio cholerae RC9]
 gi|229351803|gb|EEO16744.1| ribonuclease D [Vibrio cholerae B33]
 gi|229355432|gb|EEO20353.1| ribonuclease D [Vibrio cholerae BX 330286]
 gi|229370127|gb|ACQ60550.1| ribonuclease D [Vibrio cholerae MJ-1236]
 gi|254844775|gb|EET23189.1| ribonuclease D [Vibrio cholerae MO10]
 gi|297542317|gb|EFH78367.1| ribonuclease D [Vibrio cholerae MAK 757]
          Length = 381

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 18  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 76  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAA 187


>gi|229523996|ref|ZP_04413401.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
 gi|229337577|gb|EEO02594.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
          Length = 381

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 18  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMLDGEN-LSLIDPTVLDEMTP-FV 75

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 76  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 187


>gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
 gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
          Length = 582

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 14/181 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + +D E  GL P   R+ ++QL+ G  T  VD+  +         L G  +     K+ H
Sbjct: 30  VGLDIEATGLSPLDARMRLLQLAAGGETFVVDVFEVKDLSPLREALEGGPL-----KVLH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI----NISKAQQ 136
             ++D + L    G+R+ P+F T +A++L      + G   +L+ + G      + K  +
Sbjct: 85  NAKYDYSFLLAQHGIRLSPLFDTMLAAQLLD--GGEQGPSYSLEAVAGRYLQETVDKTAR 142

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
             DWS  +LS EQL+YAA D   L  L  +  E L+R G   ++      +   AE++L 
Sbjct: 143 REDWS-KELSREQLEYAARDAAILLPLHERLQELLEREGLGPVSRIEFGAVPAIAEMELA 201

Query: 197 G 197
           G
Sbjct: 202 G 202


>gi|148978262|ref|ZP_01814780.1| ribonuclease D [Vibrionales bacterium SWAT-3]
 gi|145962563|gb|EDK27840.1| ribonuclease D [Vibrionales bacterium SWAT-3]
          Length = 372

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 11/178 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE +       +L ++QL  G+ T+ +I   A  +  P  VG+L D    
Sbjct: 19  AREADVVMLDTEFVRTRTYYPQLGLIQLFDGE-TLSLIDPIALDEMTP-FVGLLKDASVL 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132
           K+ H    D+ V    F     P+  T+I +         HGL       + E +G+++ 
Sbjct: 77  KVLHACGEDLEVFQNAFDCTPTPMVDTQIMAAFL-----GHGLSTGFAALVSEFVGVDLD 131

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           K++  +DW A  LS +QL YAA+DV +L  +  +  EK+   G  + A    +  + R
Sbjct: 132 KSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQQESDLQVAR 189


>gi|77457615|ref|YP_347120.1| ribonuclease D [Pseudomonas fluorescens Pf0-1]
 gi|77381618|gb|ABA73131.1| putative ribonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 377

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 21/158 (13%)

Query: 23  IAVDTETLGLMPRRDRLCIVQ--LSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKRE 76
           +A+DTE +    R D    +   L  GDG     +D + I A Q     L  +L +    
Sbjct: 27  VALDTEFM----RVDTFYPIAGLLQVGDGKRAYLIDPLTINAWQP----LAALLENPAVL 78

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+LGI + K
Sbjct: 79  KVLHACSEDLEVLLRLTGSLPAPLFDTQLAA----AYLNLGFSMGYSRLVQEVLGIELPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +  SDW    LSD Q+ YAA D VHL  + +Q   KL
Sbjct: 135 GETRSDWLQRPLSDTQISYAAEDAVHLAEVFVQLRPKL 172


>gi|57239422|ref|YP_180558.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579394|ref|YP_197606.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|57161501|emb|CAH58427.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58418020|emb|CAI27224.1| Ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 389

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 23  IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           IAVDTE +        RL ++Q++  +G   +I + A   +   L  +  +++  KIFH 
Sbjct: 27  IAVDTEFIRNCNEYYPRLSLIQIAWSEGKC-VIDVLADDIDLSVLESIFYNKEIVKIFHD 85

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSSDW 140
            + DI  L   F     P+F ++IA+     Y N  G    + + L +++ K   + S+W
Sbjct: 86  CKQDIDALLTKFPRIPYPIFDSQIAAMFCAYYDNAVGYSKLVAQFLDVSLDKLTLKRSNW 145

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
               LSD+++QYA  DVV+L+ L
Sbjct: 146 LMRPLSDDKIQYALDDVVYLYEL 168


>gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata]
 gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata]
          Length = 1786

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 23/196 (11%)

Query: 22   AIAVDTETLGLMPRRDRLCIVQLS-PGDGTV--DIIRIAAGQKNAPNLV----------- 67
            A+ VD ET GL    +++ +VQLS P   +V  D+ ++      + N+V           
Sbjct: 1221 AVGVDIETTGLDHNTNQIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVVPGRNELIKCEW 1280

Query: 68   --GMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRL---TRTYTNQHGLKD 121
               +   +   K+FH G+FDI  L   +G     P+F T +AS+L   +R  + +  L  
Sbjct: 1281 LKNLFKSKDTVKVFHNGKFDINFL-RVYGFEFEGPIFDTMVASKLLVASRYISCK--LTH 1337

Query: 122  NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
              +  L I + K QQ SDWS   L +EQL Y+A D   L  L +     L+    +D+A+
Sbjct: 1338 VSERYLNIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLYVILEHLLKINNLADIAS 1397

Query: 182  SCCNFLMDRAELDLLG 197
                 ++  ++++L G
Sbjct: 1398 VENKCILATSDMELNG 1413


>gi|260466883|ref|ZP_05813067.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
 gi|259029385|gb|EEW30677.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
          Length = 383

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 2/174 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE +        LC++Q++   G   +I   +   +      ++ +E   K+FH
Sbjct: 21  DFVTVDTEFIRETTFWPILCLIQMA-APGVTALIDPLSSDIDLRPFFKLMANEAVVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++ +   +   PVF T++A+ +   + +       ++ + G  + K+ + +DW
Sbjct: 80  AARQDIEIIVHLGDLVPHPVFDTQVAAMVC-GFGDSVSYDQLVQRITGARLDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
               LSD+QL YA +DV HL  +      +L R  R+       + L  R   D
Sbjct: 139 RHRPLSDKQLDYALADVTHLIEVYQHLNAELARENRAHWLNEEMDVLTSRETYD 192


>gi|16272339|ref|NP_438552.1| ribonuclease D [Haemophilus influenzae Rd KW20]
 gi|1173094|sp|P44442|RND_HAEIN RecName: Full=Ribonuclease D; Short=RNase D
 gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd KW20]
          Length = 399

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  V +L + K  
Sbjct: 46  AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEH-VSLIDPLAITDFSP-FVALLANPKVL 103

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R     T+  GL    ++ L + I K   
Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNVEIDKGAT 162

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 163 RTNWIKRPLSDIQLQYAAGDVWYLLPL 189


>gi|168698136|ref|ZP_02730413.1| ribonuclease D [Gemmata obscuriglobus UQM 2246]
          Length = 435

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 3/172 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +  DTE +G    R  LC+VQ+S  +    I     G  +      +L+D KR  + H G
Sbjct: 35  VGFDTEFVGEDAYRPELCLVQVSTAEQLFVIDPFECGSLD--GFWDLLLDRKRTVVVHAG 92

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + ++  G     VF  +IA+ L    T   G    + +LL   + K +  +DW  
Sbjct: 93  REDVRMCYFQAGSAPPNVFDVQIAAGLV-GLTYPIGYAGLVHDLLRQRMQKGETLTDWRQ 151

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
             L+  Q++YA  DV +L     + TE+L++  R   A       + RA  D
Sbjct: 152 RPLTPAQVRYAYDDVRYLLPAHRKLTERLKKYRRLPWAEEEFAAAVKRAVAD 203


>gi|148827593|ref|YP_001292346.1| ribonuclease D [Haemophilus influenzae PittGG]
 gi|148718835|gb|ABQ99962.1| ribonuclease D [Haemophilus influenzae PittGG]
          Length = 401

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  V +L + K  
Sbjct: 46  AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLANPKVL 103

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R     T+  GL    ++ L I I K   
Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNIEIDKGAT 162

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 163 LTNWIKRPLSDIQLQYAAGDVWYLLPL 189


>gi|154253761|ref|YP_001414585.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
 gi|154157711|gb|ABS64928.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
          Length = 427

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 2/167 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +        LC++QL+     + +  +A     AP    ++ +    K+FH  
Sbjct: 66  VTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDLDLAP-FYALMKNRNVVKVFHAA 124

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI +  +       P+F T++A+ +   + +  G +  +++L G ++ K+ + +DWS 
Sbjct: 125 RQDIEIFCHEGKAIPDPLFDTQVAAMVC-GFGDSVGYETLVRKLAGGSVDKSSRFTDWSR 183

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
             LSD+QLQYA +DV +L  +     ++L    R+         L D
Sbjct: 184 RPLSDKQLQYAMADVTYLRTIYEVLAKRLTHTKRAHWVAEEMAVLQD 230


>gi|260580546|ref|ZP_05848374.1| ribonuclease D [Haemophilus influenzae RdAW]
 gi|260092888|gb|EEW76823.1| ribonuclease D [Haemophilus influenzae RdAW]
          Length = 399

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  V +L + K  
Sbjct: 46  AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEH-VSLIDPLAITDFSP-FVALLANPKVL 103

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R     T+  GL    ++ L + I K   
Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNVEIDKGAT 162

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 163 RTNWIKRPLSDIQLQYAAGDVWYLLPL 189


>gi|255745267|ref|ZP_05419216.1| ribonuclease D [Vibrio cholera CIRS 101]
 gi|262155992|ref|ZP_06029112.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
 gi|255737097|gb|EET92493.1| ribonuclease D [Vibrio cholera CIRS 101]
 gi|262030170|gb|EEY48814.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
          Length = 373

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 10  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 67

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 68  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 126

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 127 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAA 179


>gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1]
 gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1]
          Length = 399

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  V +L + K  
Sbjct: 46  AQQQSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLANPKVL 103

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R     T+  GL    ++ L I I K   
Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNIEIDKGAT 162

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 163 LTNWIKRPLSDIQLQYAAGDVWYLLPL 189


>gi|121729927|ref|ZP_01682350.1| ribonuclease D [Vibrio cholerae V52]
 gi|121628334|gb|EAX60840.1| ribonuclease D [Vibrio cholerae V52]
          Length = 350

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 4/173 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 10  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 67

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 68  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 126

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 127 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAA 179


>gi|229846478|ref|ZP_04466586.1| ribonuclease D [Haemophilus influenzae 7P49H1]
 gi|229810571|gb|EEP46289.1| ribonuclease D [Haemophilus influenzae 7P49H1]
          Length = 380

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  V +L + K  
Sbjct: 27  AQQQSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLSNPKVL 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R     T+  GL    ++ L I I K   
Sbjct: 85  KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFIGLGTS-AGLAKLAQQYLNIEIDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170


>gi|294055851|ref|YP_003549509.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
 gi|293615184|gb|ADE55339.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
          Length = 386

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 2/170 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A+ VDTE +        L +VQL   DG  ++I     +  +P L  ++ D    KI H 
Sbjct: 20  AVGVDTEFVWDRTYYPTLGVVQLGYPDGHCELIDAPEIEDWSP-LAELMSDPNVVKILHD 78

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            + D+ +L    G   + +F T++ +      ++   L+D LK LL + ++K +  SDW 
Sbjct: 79  AQQDLTILRRVCGSDPKTIFDTQLTAGFI-GLSSTISLRDILKTLLKVRLAKTETQSDWV 137

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           A  L++ Q++YA  DV     L  Q  ++   LGR +   +   +  D A
Sbjct: 138 ARPLTEAQIKYAEDDVRDSVRLMEQILKRADALGRREWIENEMTYYEDAA 187


>gi|301156355|emb|CBW15826.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
          Length = 383

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR   A+A+DTE + +     +L ++QL  G+  V +I   +    +P  V +L D+   
Sbjct: 27  ARQQSAVALDTEFMRVSTYYPKLGLIQLYDGE-RVSLIDPLSITDFSP-FVELLRDQLVT 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    +P+  T+I +R    + N  GL   +   LGI + K   
Sbjct: 85  KILHACNEDLLVFLQEFDALPQPMMDTQIMARFL-GFANSAGLAKLVLHYLGIEMDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            ++W    LS  QLQYAA DV +L
Sbjct: 144 RTNWLKRPLSPVQLQYAAGDVWYL 167


>gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
 gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
          Length = 295

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTE+       DR+C++Q+S  +   D I      K+   L  +  + + EK+ H  
Sbjct: 26  LAVDTESNSFYAYFDRVCLIQISSPER--DYIIDPLSLKDLSVLGRLFENPRIEKVLHAA 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+  L   F  R   +F T IA +L      Q GL   L+   G++++K  Q  DW  
Sbjct: 84  SNDVLGLRRDFQFRFNGLFDTAIACKLLGY--KQLGLSKILETHFGVSLNKRWQRYDWGK 141

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
             L  +QL YA  D  +L ALR      LQ   R   A +C  F
Sbjct: 142 RPLVPDQLDYARLDTHYLIALRHMLAADLQ--SRELWAEACEAF 183


>gi|271500522|ref|YP_003333547.1| ribonuclease D [Dickeya dadantii Ech586]
 gi|270344077|gb|ACZ76842.1| ribonuclease D [Dickeya dadantii Ech586]
          Length = 373

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 5/188 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   EG + A CA A  V  +A+DTE +       +L ++QL  GD    I  +A    N
Sbjct: 6   ITTDEG-LSAVCALACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLSLIDPLAI--SN 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L + +  K  H G  D+ V    FG    P   T+I +   R     +G    
Sbjct: 63  WEPFRALLQNPQVTKYLHAGSEDLEVFLNAFGCLPSPFIDTQILAAF-RGKPLSYGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + +   I + K++  +DW A  LS++Q QYAA+DV +L  +     E+ +  G  + A  
Sbjct: 122 VADYRQIVLDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARVLVEETRLAGWMEAALD 181

Query: 183 CCNFLMDR 190
            C  L  R
Sbjct: 182 ECQLLCQR 189


>gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18]
 gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18]
          Length = 377

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 4/154 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A D E   L    +++C++Q+S       I  +A    +   L  +  +   +KIFH  
Sbjct: 35  LAFDLEADSLHHYTEKVCLIQVSSESENRLIDPLAP--IDVRVLAPIFANPAIKKIFHGA 92

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +D+  L+  FG+ V  +F T IAS+      ++ GL   LK+  G+ + K  Q +DWS 
Sbjct: 93  DYDMRSLYRDFGIEVVNLFDTMIASQFL--GESEFGLAALLKKRFGVELDKRYQKADWSK 150

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
              S E L+YA  D   L  L  Q   +L   GR
Sbjct: 151 RPFSQEMLEYAMKDTSLLIELYRQLEAELLAKGR 184


>gi|85059311|ref|YP_455013.1| ribonuclease D [Sodalis glossinidius str. 'morsitans']
 gi|84779831|dbj|BAE74608.1| ribonuclease D [Sodalis glossinidius str. 'morsitans']
          Length = 380

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 7/170 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +AVDTE +       +L ++Q+  G+    +D + I   Q      + +L DE+  K+ H
Sbjct: 26  VAVDTEFVRTCTYYPQLGLIQMFDGEALTLIDPLAITDWQP----FIALLADEQVTKLLH 81

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+ V +++FG    P+  T++ +  T    +  G    + E L + + K +  +DW
Sbjct: 82  ACSEDLEVFWHSFGQMPVPMIDTQVLAAFTGRALS-CGFAALVAETLDVTLDKTESRTDW 140

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            A  LS  Q  YAA+DV  L  +  +   + Q+ G    A+  C  +  R
Sbjct: 141 LARPLSKRQCDYAAADVYWLLPMAHKLIAQTQQAGWWSQASQECEAICQR 190


>gi|269959116|ref|YP_003328905.1| ribonuclease D [Anaplasma centrale str. Israel]
 gi|269848947|gb|ACZ49591.1| ribonuclease D [Anaplasma centrale str. Israel]
          Length = 389

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 21  DAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +++AVDTE +        RLC++Q++   G   ++ +   + +   L  +  DE   K+F
Sbjct: 26  ESLAVDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLSPLQEIFDDEGICKVF 84

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSS 138
           H  R D+  L   F    +P+F T+ AS L   + N  G    +++ LG+ ++K   +  
Sbjct: 85  HDCRQDLDALSQRFLRLPKPIFDTQTASMLCEYHDNSVGYSKLVEQFLGVKLNKLLFKRV 144

Query: 139 DWSADDLSDEQLQYAASDVVHLHAL 163
           DWS   LS+ +++YA  DV +LH L
Sbjct: 145 DWSHRPLSEGKVRYALDDVTYLHEL 169


>gi|238751610|ref|ZP_04613100.1| Ribonuclease D [Yersinia rohdei ATCC 43380]
 gi|238710172|gb|EEQ02400.1| Ribonuclease D [Yersinia rohdei ATCC 43380]
          Length = 394

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    +A+DTE +       +L ++QL  G+    +D + I   Q        ++ D  
Sbjct: 40  ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQWQP----FRELIQDLN 95

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F     P+  T++ +  + R+ +   G    + E  G+ + K
Sbjct: 96  VVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFSGRSLSC--GFAMLVNEFEGVELDK 153

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   CN L  R
Sbjct: 154 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECNLLCRR 210


>gi|260582345|ref|ZP_05850138.1| ribonuclease D [Haemophilus influenzae NT127]
 gi|260094713|gb|EEW78608.1| ribonuclease D [Haemophilus influenzae NT127]
          Length = 380

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G   V +I   A    +P  V +L + K  
Sbjct: 27  AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGKH-VSLIDPLAITDFSP-FVALLANPKVL 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R     T+  GL    ++ L I I K   
Sbjct: 85  KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNIEIDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170


>gi|71275157|ref|ZP_00651444.1| Ribonuclease D [Xylella fastidiosa Dixon]
 gi|71163966|gb|EAO13681.1| Ribonuclease D [Xylella fastidiosa Dixon]
          Length = 362

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 3/187 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +   D  A    R    I +DTE +        L +VQ++  D  + +  +  G  +A  
Sbjct: 5   IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      KI H    D+    Y  GV  RP+F T+I + LT       G +  + +
Sbjct: 65  L--WLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGM-GYQKLVAK 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  + + K +  SDW    L+  QL YAA+DV +L  L    TE+L  + RS      C 
Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCT 181

Query: 186 FLMDRAE 192
            L D  E
Sbjct: 182 RLTDNIE 188


>gi|68248994|ref|YP_248106.1| ribonuclease D [Haemophilus influenzae 86-028NP]
 gi|68057193|gb|AAX87446.1| ribonuclease D [Haemophilus influenzae 86-028NP]
          Length = 380

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL   D  V +I   A    +P  V +L + K  
Sbjct: 27  AQMKSAVALDTEFMRVSTYFPKLGLIQLY-DDERVSLIDPLAITDFSP-FVALLSNPKVL 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R     T+  GL    ++ L I I K   
Sbjct: 85  KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNIEIDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170


>gi|82543793|ref|YP_407740.1| ribonuclease D [Shigella boydii Sb227]
 gi|81245204|gb|ABB65912.1| RNase D [Shigella boydii Sb227]
          Length = 375

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K  H G  D+ V    FG   +P+  T+I S       +  G    ++E  G+ + K++
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFCGRPMS-WGFASMVEEYSGVTLDKSE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|187733914|ref|YP_001880596.1| ribonuclease D [Shigella boydii CDC 3083-94]
 gi|187430906|gb|ACD10180.1| ribonuclease D [Shigella boydii CDC 3083-94]
          Length = 375

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 4/179 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K  H G  D+ V    FG   +P+  T+I S       +  G    ++E  G+ + K++
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFCGRPMS-WGFASMVEEYSGVTLDKSE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL-MDRAEL 193
             +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  + M R E+
Sbjct: 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEV 193


>gi|157145434|ref|YP_001452753.1| ribonuclease D [Citrobacter koseri ATCC BAA-895]
 gi|157082639|gb|ABV12317.1| hypothetical protein CKO_01177 [Citrobacter koseri ATCC BAA-895]
          Length = 371

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I     G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHVALID--PHGITDWSPLRAVLRDTAI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V   TFG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNTFGELPQPLIDTQILAAFCGRPLS--WGFAAMVEEFTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITKKLMVETEASGWLPAALDECRLMQQR 185


>gi|170731148|ref|YP_001776581.1| ribonuclease D [Xylella fastidiosa M12]
 gi|167965941|gb|ACA12951.1| ribonuclease D [Xylella fastidiosa M12]
          Length = 362

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 3/187 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +   D  A    R    I +DTE +        L +VQ++  D  + +  +  G  +A  
Sbjct: 5   IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      KI H    D+    Y  GV  RP+F T+I + LT       G +  + +
Sbjct: 65  L--WLAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQIGAALTGLGGGM-GYQKLVAK 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  + + K +  SDW    L+  QL YAA+DV +L  L    TE+L  + RS      C 
Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCT 181

Query: 186 FLMDRAE 192
            L D  E
Sbjct: 182 RLTDNIE 188


>gi|320183816|gb|EFW58649.1| Ribonuclease D [Shigella flexneri CDC 796-83]
 gi|332096395|gb|EGJ01392.1| ribonuclease D [Shigella boydii 3594-74]
          Length = 371

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K  H G  D+ V    FG   +P+  T+I S       +  G    ++E  G+ + K++
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFCGRPMS-WGFASMVEEYSGVTLDKSE 130

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 131 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|123442616|ref|YP_001006593.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122089577|emb|CAL12426.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 373

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    +A+DTE +       +L ++QL  G+    +D + I   Q        +L D  
Sbjct: 19  ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQWQP----FRELLQDLN 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F +   P+  T++ +  + R+ +   G    + E  G+ + K
Sbjct: 75  VVKYLHAGSEDLEVFLNAFELMPTPMIDTQVLAAFSGRSLSC--GFAMLVNEFEGVELDK 132

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDECELLCRR 189


>gi|320173702|gb|EFW48889.1| Ribonuclease D [Shigella dysenteriae CDC 74-1112]
          Length = 371

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPAI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K  H G  D+ V    FG   +P+  T+I S       +  G    ++E  G+ + K++
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFCGRPMS-WGFASMVEEYSGVTLDKSE 130

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 131 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|78224579|ref|YP_386326.1| 3'-5' exonuclease [Geobacter metallireducens GS-15]
 gi|78195834|gb|ABB33601.1| 3'-5' exonuclease [Geobacter metallireducens GS-15]
          Length = 382

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 8/167 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PG-DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A D E   +   ++++C++Q + PG    VD + +A     AP    +  +    K+FH
Sbjct: 30  VACDLEADSMHHYQEKVCLIQFTVPGLAAIVDPLAVADLAPLAP----VFANPSIRKVFH 85

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +DI  L   FG+ V  +F T IA +       + GL   L++  G+ + K  Q +DW
Sbjct: 86  GADYDIRSLHRDFGIEVNNLFDTMIACQFL--GEREFGLAAVLRKRFGVELDKQYQRADW 143

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           S   L+   ++YAA D   L  L  +   +L+  GR       C  L
Sbjct: 144 SRRPLTAGMIEYAAKDTTLLIELCGRLEAELREKGRIGWVEEECALL 190


>gi|302335597|ref|YP_003800804.1| ribonuclease D [Olsenella uli DSM 7084]
 gi|301319437|gb|ADK67924.1| ribonuclease D [Olsenella uli DSM 7084]
          Length = 376

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 7/151 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+DTE L       RLC++Q +  D    +D I I     +   L  +L DE   K+FH
Sbjct: 22  LAIDTEFLRERTYFPRLCLIQAATPDESAAIDPILI----DDLSPLARLLTDESITKVFH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+ V++        P+F T++A+     +  Q G    +    G+ + KA+  +DW
Sbjct: 78  ACSQDLEVIYDALHCVPGPIFDTQLAAAFL-GHRQQIGYGALVDACCGVRLPKAESLTDW 136

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           S   L  EQL YA  DV +L  +  Q   +L
Sbjct: 137 SRRPLDAEQLAYAEDDVRYLPGIYDQMMAEL 167


>gi|58617449|ref|YP_196648.1| ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58417061|emb|CAI28174.1| Ribonuclease D [Ehrlichia ruminantium str. Gardel]
          Length = 389

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 3/143 (2%)

Query: 23  IAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           IAVDTE +        RL ++Q++   G   +I + A   +   L  +  +++  KIFH 
Sbjct: 27  IAVDTEFIRNCNEYYPRLSLIQIAWSKGKC-VIDVLADDIDLSVLESIFYNKEIVKIFHD 85

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-QSSDW 140
            + DI  L   F     P+F ++IA+     Y N  G    + + L +++ K   + S+W
Sbjct: 86  CKQDIDALLTKFPRIPYPIFDSQIAAMFCAYYDNAVGYSKLVAQFLDVSLDKLTLKRSNW 145

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
               LSD+++QYA  DVV+L+ L
Sbjct: 146 LMRPLSDDKIQYALDDVVYLYEL 168


>gi|319775680|ref|YP_004138168.1| ribonuclease D [Haemophilus influenzae F3047]
 gi|317450271|emb|CBY86487.1| ribonuclease D [Haemophilus influenzae F3047]
          Length = 380

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  V +L + K  
Sbjct: 27  AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLSNPKVL 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V    F    RP+  T+I +R     T+  GL    ++ L I I K   
Sbjct: 85  KVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNIEIDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170


>gi|261209844|ref|ZP_05924146.1| ribonuclease D [Vibrio sp. RC341]
 gi|260841142|gb|EEX67662.1| ribonuclease D [Vibrio sp. RC341]
          Length = 398

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 35  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVMDEMTP-FV 92

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 93  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 151

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G
Sbjct: 152 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAG 199


>gi|194468559|ref|ZP_03074543.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205358811|ref|ZP_02659348.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194454923|gb|EDX43762.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331760|gb|EDZ18524.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 375

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D + 
Sbjct: 18  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTEI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189


>gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 586

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 6/150 (4%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
           D++ ++Q+   + T  I  +    +   N +  L+ E +  I H  +FD+  L     + 
Sbjct: 43  DKIRLIQIGDEENTFVIDLLKINPEVVKNHIQNLI-ENKGIIGHNLKFDLKFLKTNLNIL 101

Query: 97  VRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
            + VF T IAS++     N  +H L  + K  + +++ K  Q S W A DLS EQ++YAA
Sbjct: 102 PKIVFDTMIASQILAKGDNSQRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSPEQIEYAA 161

Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            D+    ALR  F E+  +L + +L     
Sbjct: 162 KDI---DALRHLFKEEKNQLNQDNLHKKAS 188


>gi|213865181|ref|ZP_03387300.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 200

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 3   AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 60

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 61  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 118

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 119 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 174


>gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 587

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 6/150 (4%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
           D++ ++Q+   + T  I  +    +   N +  L+ E +  I H  +FD+  L     + 
Sbjct: 44  DKIRLIQIGDEENTFVIDLLKINPEVVKNHIQNLI-ENKGIIGHNLKFDLKFLKTNLNIL 102

Query: 97  VRPVFCTKIASR-LTRTYTNQ-HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
            + VF T IAS+ L +  +NQ H L  + K  + +++ K  Q S W A DLS EQ++YAA
Sbjct: 103 PKIVFDTMIASQILAKGDSNQRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSSEQIEYAA 162

Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            D+     LR  F E+  +L + +L     
Sbjct: 163 KDI---DTLRHLFKEEKNQLNQDNLHKKAS 189


>gi|331683306|ref|ZP_08383907.1| ribonuclease D [Escherichia coli H299]
 gi|331079521|gb|EGI50718.1| ribonuclease D [Escherichia coli H299]
          Length = 371

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 6/180 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL-MDRAEL 193
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  + M R E+
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEI 189


>gi|238897738|ref|YP_002923417.1| RNase D, processes tRNA precursor [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465495|gb|ACQ67269.1| RNase D, processes tRNA precursor [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 387

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 3/169 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A+A+DTE +        L ++QL  G   V +I      + AP    +L ++K  K  H 
Sbjct: 35  AVALDTEFVRTKTYYAELGLIQLYDGH-RVSLIDPFLITEWAP-FYCLLKNKKIVKFLHS 92

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              DI + F+ F     P+  ++I +  T    +  G    +KE  GI ++KA+  +DW 
Sbjct: 93  AGEDIEIFFHFFKTLPEPLIDSQILAAFTGRPVSC-GFSILVKEFQGIVLNKAESRTDWL 151

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           A  LS +Q  YAA DV +L  L     +K++  G  +     C  L  R
Sbjct: 152 ARPLSQKQCDYAAEDVFYLLPLANALMKKIETSGWMEAVKEECELLCQR 200


>gi|205357935|ref|ZP_02574364.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328669|gb|EDZ15433.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|323130091|gb|ADX17521.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 390

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 33  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 90

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 91  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 148

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 149 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 204


>gi|145628753|ref|ZP_01784553.1| ribonuclease D [Haemophilus influenzae 22.1-21]
 gi|144979223|gb|EDJ88909.1| ribonuclease D [Haemophilus influenzae 22.1-21]
          Length = 399

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V ++   A    +P  V +L + K  
Sbjct: 46  AQMKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLVDPLAITDFSP-FVALLSNPKVL 103

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R     T+  GL    ++ L + I K   
Sbjct: 104 KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNVEIDKGAT 162

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 163 RTNWIKRPLSDIQLQYAAGDVWYLLPL 189


>gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica]
          Length = 354

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 14  ECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           E A R  D+   A+DTE   L   R+ LC++Q S   G   +I     +  +P  +G  +
Sbjct: 13  EQAGRGSDSPVCAIDTEADSLHRYRESLCLIQFS-AKGESVLIDPLVIEDLSP--LGSYL 69

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            E      H   +D+ +    FG   + V+ T+I +RL      + GL D +    G+ +
Sbjct: 70  SEA-TVWMHGADYDMTMFKRQFGDLPKVVYDTQIGARLL--GARRFGLGDLVSLYFGVEL 126

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           SK+ Q +DW    LS + ++YA +DV +L  +      KL+ LGR +     C 
Sbjct: 127 SKSSQKADWGKRPLSPKMIEYALNDVHYLLEMGDLIVTKLKDLGRYEWFLESCT 180


>gi|254286913|ref|ZP_04961865.1| ribonuclease D [Vibrio cholerae AM-19226]
 gi|150423063|gb|EDN15012.1| ribonuclease D [Vibrio cholerae AM-19226]
          Length = 381

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 18  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 76  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G
Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAG 182


>gi|213648384|ref|ZP_03378437.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
          Length = 371

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 14  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185


>gi|16765158|ref|NP_460773.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194448143|ref|YP_002045863.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197262566|ref|ZP_03162640.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205358997|ref|ZP_02666341.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|16420349|gb|AAL20732.1| RNase D [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194406447|gb|ACF66666.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197240821|gb|EDY23441.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205339484|gb|EDZ26248.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|261247002|emb|CBG24819.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993774|gb|ACY88659.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158341|emb|CBW17840.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332988704|gb|AEF07687.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 375

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 18  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189


>gi|30062942|ref|NP_837113.1| ribonuclease D [Shigella flexneri 2a str. 2457T]
 gi|56479892|ref|NP_707318.2| ribonuclease D [Shigella flexneri 2a str. 301]
 gi|30041191|gb|AAP16920.1| RNase D [Shigella flexneri 2a str. 2457T]
 gi|56383443|gb|AAN43025.2| RNase D [Shigella flexneri 2a str. 301]
 gi|313649164|gb|EFS13598.1| ribonuclease D [Shigella flexneri 2a str. 2457T]
 gi|332758877|gb|EGJ89192.1| ribonuclease D [Shigella flexneri 2747-71]
 gi|332762455|gb|EGJ92720.1| ribonuclease D [Shigella flexneri 4343-70]
 gi|332767130|gb|EGJ97325.1| ribonuclease D [Shigella flexneri 2930-71]
 gi|333004261|gb|EGK23792.1| ribonuclease D [Shigella flexneri K-218]
          Length = 371

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRVFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|170717427|ref|YP_001784527.1| ribonuclease D [Haemophilus somnus 2336]
 gi|168825556|gb|ACA30927.1| ribonuclease D [Haemophilus somnus 2336]
          Length = 381

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 4/172 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+    IA+DTE +       +L ++QL  G+  V +I        +P  + +L ++K  
Sbjct: 30  AQQKTVIALDTEFVRTKSFYPKLGLIQLYDGE-QVSLIDPFELNDFSP-FIQLLANQKVT 87

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  + F     P+  T+I +   + + N  GL   LK    + I K   
Sbjct: 88  KVLHACSEDLEVFQHYFQQLPTPMLDTQIMAAFLQ-HGNSIGLATLLKHYFKLEIDKGIS 146

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSDLATSCCNFL 187
            ++W A  LSD QL YAA+DV +L  L  +  +KL Q   +S +   C N L
Sbjct: 147 RTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTSWQSAVQNDCENLL 198


>gi|213052594|ref|ZP_03345472.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213419335|ref|ZP_03352401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213426609|ref|ZP_03359359.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213609541|ref|ZP_03369367.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|289828970|ref|ZP_06546670.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
          Length = 371

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 14  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185


>gi|161613674|ref|YP_001587639.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161363038|gb|ABX66806.1| hypothetical protein SPAB_01399 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|322616813|gb|EFY13721.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618052|gb|EFY14944.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625723|gb|EFY22542.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626173|gb|EFY22983.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633779|gb|EFY30519.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638933|gb|EFY35626.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640751|gb|EFY37401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644138|gb|EFY40683.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649210|gb|EFY45648.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655369|gb|EFY51677.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660875|gb|EFY57106.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662828|gb|EFY59035.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668012|gb|EFY64171.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674226|gb|EFY70320.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675419|gb|EFY71493.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683166|gb|EFY79182.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686859|gb|EFY82837.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195248|gb|EFZ80428.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200159|gb|EFZ85245.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203843|gb|EFZ88861.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207397|gb|EFZ92345.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213750|gb|EFZ98532.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217380|gb|EGA02099.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220925|gb|EGA05358.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323224700|gb|EGA08971.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231403|gb|EGA15516.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235843|gb|EGA19922.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240412|gb|EGA24455.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245305|gb|EGA29305.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246673|gb|EGA30645.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253527|gb|EGA37355.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323263330|gb|EGA46866.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266778|gb|EGA50264.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268984|gb|EGA52440.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 371

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 14  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185


>gi|110641921|ref|YP_669651.1| ribonuclease D [Escherichia coli 536]
 gi|300981914|ref|ZP_07175784.1| ribonuclease D [Escherichia coli MS 200-1]
 gi|110343513|gb|ABG69750.1| ribonuclease D [Escherichia coli 536]
 gi|300307392|gb|EFJ61912.1| ribonuclease D [Escherichia coli MS 200-1]
 gi|324011590|gb|EGB80809.1| ribonuclease D [Escherichia coli MS 60-1]
          Length = 371

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|152978783|ref|YP_001344412.1| ribonuclease D [Actinobacillus succinogenes 130Z]
 gi|150840506|gb|ABR74477.1| ribonuclease D [Actinobacillus succinogenes 130Z]
          Length = 383

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I        +P    +L D    
Sbjct: 27  AQQKSAVALDTEFIRIRSYYPKLGLIQLYDGE-RVSLIDPTTITDFSP-FTALLADINVI 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  + F     P+  T++ +     + +  GL   ++  L + I K   
Sbjct: 85  KVLHACYEDLEVFSHYFQQLPEPIMDTQVMAGFL-AFPHSTGLASLIRHYLALEIDKGAS 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++QLQYAA+DV +L  L  +   +L +          C  L+++
Sbjct: 144 RTDWLARPLSEKQLQYAAADVWYLLPLYEKMAVELAKTRWQSAVEFDCGLLLEK 197


>gi|293410113|ref|ZP_06653689.1| ribonuclease D [Escherichia coli B354]
 gi|291470581|gb|EFF13065.1| ribonuclease D [Escherichia coli B354]
          Length = 371

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLSAALDECRLMQMR 185


>gi|294635861|ref|ZP_06714315.1| ribonuclease D [Edwardsiella tarda ATCC 23685]
 gi|291090794|gb|EFE23355.1| ribonuclease D [Edwardsiella tarda ATCC 23685]
          Length = 376

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+DTE +       +L +VQL  G+    +D + I+  Q      V +L + +  K+ H
Sbjct: 30  VALDTEFVRTRTYYPQLGLVQLYDGETLSLIDPLPISDWQP----FVDLLRNPQVVKLLH 85

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSSD 139
            G  D+ V  + F    +P+  T+I +  T R  ++  G    +   LG+ + K++  +D
Sbjct: 86  AGSEDLEVFLHDFQTLPQPLIDTQILAAFTGRPLSS--GFAAMVNAYLGVELDKSESRTD 143

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           W A  LS+ Q  YAA+DV +L  +  Q   +++  G    A   C  L  R
Sbjct: 144 WLARPLSERQCDYAAADVYYLLPMAHQLLAEVEGCGWLPAALDECQALCRR 194


>gi|300938850|ref|ZP_07153558.1| ribonuclease D [Escherichia coli MS 21-1]
 gi|300456240|gb|EFK19733.1| ribonuclease D [Escherichia coli MS 21-1]
          Length = 371

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|261343835|ref|ZP_05971480.1| ribonuclease D [Providencia rustigianii DSM 4541]
 gi|282568219|gb|EFB73754.1| ribonuclease D [Providencia rustigianii DSM 4541]
          Length = 373

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 3/168 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +       +L ++QL  G+  V +I        +P    +L +  + K  H G
Sbjct: 25  LALDTEFVRTRTYYPQLGLLQLYDGN-QVSLIDPLLMTDFSP-FKALLTNPNQLKFLHAG 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V  + FG    P+  T+I +     Y    G    + E LGI + K++  +DW A
Sbjct: 83  SEDLEVFIHDFGCVPEPMIDTQIVAAFL-GYPISCGFATLVVEHLGIELDKSESRTDWLA 141

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             LS +Q  YA +DV++L  L     EK+   G  D A   C  ++ R
Sbjct: 142 RPLSAKQCDYATADVLYLLPLAKILMEKVTEAGYLDDAKDECQRVVAR 189


>gi|194445618|ref|YP_002041074.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|200390008|ref|ZP_03216619.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|194404281|gb|ACF64503.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|199602453|gb|EDZ00999.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 375

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 18  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189


>gi|16760707|ref|NP_456324.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29141535|ref|NP_804877.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|25289178|pir||AB0725 ribonuclease D [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503004|emb|CAD05500.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137162|gb|AAO68726.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 375

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 18  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189


>gi|309788586|ref|ZP_07683188.1| ribonuclease D [Shigella dysenteriae 1617]
 gi|308923613|gb|EFP69118.1| ribonuclease D [Shigella dysenteriae 1617]
          Length = 275

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K  H G  D+ V    FG   +P+  T+I +       +  G    ++E  G+ + K++
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS-WGFASMVEEYSGVTLDKSE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|170680016|ref|YP_001743442.1| ribonuclease D [Escherichia coli SMS-3-5]
 gi|218699628|ref|YP_002407257.1| ribonuclease D [Escherichia coli IAI39]
 gi|170517734|gb|ACB15912.1| ribonuclease D [Escherichia coli SMS-3-5]
 gi|218369614|emb|CAR17383.1| ribonuclease D [Escherichia coli IAI39]
          Length = 375

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|56413264|ref|YP_150339.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362190|ref|YP_002141827.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127521|gb|AAV77027.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093667|emb|CAR59137.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 371

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 14  AVRTCPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185


>gi|323152955|gb|EFZ39224.1| ribonuclease D [Escherichia coli EPECa14]
          Length = 371

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|191171723|ref|ZP_03033270.1| ribonuclease D [Escherichia coli F11]
 gi|190908053|gb|EDV67645.1| ribonuclease D [Escherichia coli F11]
 gi|284921723|emb|CBG34795.1| ribonuclease D [Escherichia coli 042]
          Length = 375

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|229897495|ref|ZP_04512651.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229693832|gb|EEO83881.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 308

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    IA+DTE +       +L ++QL  G+    +D + I   Q        +L D  
Sbjct: 32  ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRALLQDLN 87

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F     P+  T++ +  + R+ +   G    + E  G+ + K
Sbjct: 88  VVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFSGRSLSC--GFAMLVAEFEGVELDK 145

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 146 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 202


>gi|312912807|dbj|BAJ36781.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224451|gb|EFX49514.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 371

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 14  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185


>gi|110805403|ref|YP_688923.1| ribonuclease D [Shigella flexneri 5 str. 8401]
 gi|110614951|gb|ABF03618.1| RNase D, processes tRNA precursor [Shigella flexneri 5 str. 8401]
 gi|281600843|gb|ADA73827.1| RNase D [Shigella flexneri 2002017]
 gi|332759595|gb|EGJ89901.1| ribonuclease D [Shigella flexneri K-671]
 gi|333018392|gb|EGK37691.1| ribonuclease D [Shigella flexneri K-304]
          Length = 375

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRVFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|145636341|ref|ZP_01792010.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
 gi|145270506|gb|EDK10440.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
          Length = 382

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  + +L + K  
Sbjct: 27  AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FIALLANPKVL 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V    F    RP+  T+I +R     T+  GL    ++ L + I K   
Sbjct: 85  KVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNVEIDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170


>gi|323186982|gb|EFZ72300.1| ribonuclease D [Escherichia coli RN587/1]
          Length = 371

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|192361069|ref|YP_001982899.1| ribonuclease D [Cellvibrio japonicus Ueda107]
 gi|190687234|gb|ACE84912.1| ribonuclease D [Cellvibrio japonicus Ueda107]
          Length = 378

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 7/176 (3%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKR 75
           R   AIAVDTE +          ++Q+  G G   +D + IA  Q     L  +L+D K 
Sbjct: 24  RQQGAIAVDTEFMRTDTFYPIAGLLQIGDGKGCYLIDPLAIADWQP----LRELLLDGKV 79

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    D+ V      +   P+F T+I +          G  + +K LLGI I K +
Sbjct: 80  IKVLHSCSEDLEVFQRWLDLVPSPLFDTQIGAAFANLGFG-LGYANLVKTLLGIEIPKDE 138

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             SDW    LS  QL+YAA DV H+  +  +  + L+   R +   S C  L+++A
Sbjct: 139 TRSDWLQRPLSQSQLKYAALDVAHMLVVYGKLLQILKTSQRLEWVKSDCADLVEQA 194


>gi|285018846|ref|YP_003376557.1| ribonuclease d protein [Xanthomonas albilineans GPE PC73]
 gi|283474064|emb|CBA16565.1| probable ribonuclease d protein [Xanthomonas albilineans]
          Length = 361

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 3/165 (1%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           AE  A+    I +DTE +       +L +VQ++  +  + I  +  G   A  L   L D
Sbjct: 12  AERLAQRPARIGLDTEFVRERTYWPQLALVQMAVAEEILLIDPLIPGMPQA--LAPWLSD 69

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               KI H    D+       G   RP+F T+IA+ L        G +  + ++ GI+++
Sbjct: 70  PGILKIMHSASEDLVTFKCACGTLPRPLFDTQIAAGLAGIGAGM-GYQKLVLDITGIHLT 128

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           K +  SDW    LS  QL+YAA DV HL AL      +LQ L RS
Sbjct: 129 KGETRSDWLRRPLSPAQLEYAADDVRHLFALHDTLHARLQALDRS 173


>gi|90419527|ref|ZP_01227437.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
 gi|90336464|gb|EAS50205.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
          Length = 385

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 2/173 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE +        LC++Q++  D  V +  +A G   AP    ++ DE+  K+FH  
Sbjct: 25  VTVDTEFIRETTFWPELCLIQMASDDLAVLVDPLADGLDLAP-FFDLMRDERIVKVFHAA 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ ++     +   P+F T++A+ +   +         +       I K  + +DW  
Sbjct: 84  RQDVEIIHKLGDIIPVPLFDTQVAAMVC-GFGESIAYDQLVARTTDGRIDKTSRFTDWRR 142

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             LSD+QL YA +DV +L  +    + +L   GR+         L D A  DL
Sbjct: 143 RPLSDQQLAYALADVTYLRDVYRFLSAQLAEKGRTRWVDEEMAVLTDPATYDL 195


>gi|170770112|ref|ZP_02904565.1| ribonuclease D [Escherichia albertii TW07627]
 gi|170121069|gb|EDS90000.1| ribonuclease D [Escherichia albertii TW07627]
          Length = 375

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVRYLLPITTKLMAETEASGWLPAALDECRLMQIR 189


>gi|117623964|ref|YP_852877.1| ribonuclease D [Escherichia coli APEC O1]
 gi|227885769|ref|ZP_04003574.1| ribonuclease D [Escherichia coli 83972]
 gi|237705754|ref|ZP_04536235.1| ribonuclease D [Escherichia sp. 3_2_53FAA]
 gi|300994259|ref|ZP_07180813.1| ribonuclease D [Escherichia coli MS 45-1]
 gi|301050852|ref|ZP_07197705.1| ribonuclease D [Escherichia coli MS 185-1]
 gi|306814949|ref|ZP_07449105.1| ribonuclease D [Escherichia coli NC101]
 gi|312967002|ref|ZP_07781220.1| ribonuclease D [Escherichia coli 2362-75]
 gi|331657844|ref|ZP_08358806.1| ribonuclease D [Escherichia coli TA206]
 gi|115513088|gb|ABJ01163.1| Ribonuclease D [Escherichia coli APEC O1]
 gi|222033551|emb|CAP76292.1| ribonuclease D [Escherichia coli LF82]
 gi|226900511|gb|EEH86770.1| ribonuclease D [Escherichia sp. 3_2_53FAA]
 gi|227837342|gb|EEJ47808.1| ribonuclease D [Escherichia coli 83972]
 gi|300297490|gb|EFJ53875.1| ribonuclease D [Escherichia coli MS 185-1]
 gi|300406325|gb|EFJ89863.1| ribonuclease D [Escherichia coli MS 45-1]
 gi|305851597|gb|EFM52050.1| ribonuclease D [Escherichia coli NC101]
 gi|307553822|gb|ADN46597.1| ribonuclease D [Escherichia coli ABU 83972]
 gi|307626717|gb|ADN71021.1| ribonuclease D [Escherichia coli UM146]
 gi|312288466|gb|EFR16368.1| ribonuclease D [Escherichia coli 2362-75]
 gi|312946400|gb|ADR27227.1| ribonuclease D [Escherichia coli O83:H1 str. NRG 857C]
 gi|315286519|gb|EFU45954.1| ribonuclease D [Escherichia coli MS 110-3]
 gi|315290392|gb|EFU49767.1| ribonuclease D [Escherichia coli MS 153-1]
 gi|315299924|gb|EFU59162.1| ribonuclease D [Escherichia coli MS 16-3]
 gi|323952305|gb|EGB48178.1| ribonuclease D [Escherichia coli H252]
 gi|323956433|gb|EGB52175.1| ribonuclease D [Escherichia coli H263]
 gi|323978014|gb|EGB73100.1| ribonuclease D [Escherichia coli TW10509]
 gi|324007181|gb|EGB76400.1| ribonuclease D [Escherichia coli MS 57-2]
 gi|331056092|gb|EGI28101.1| ribonuclease D [Escherichia coli TA206]
          Length = 371

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|300904667|ref|ZP_07122502.1| ribonuclease D [Escherichia coli MS 84-1]
 gi|301305900|ref|ZP_07211983.1| ribonuclease D [Escherichia coli MS 124-1]
 gi|300403417|gb|EFJ86955.1| ribonuclease D [Escherichia coli MS 84-1]
 gi|300838826|gb|EFK66586.1| ribonuclease D [Escherichia coli MS 124-1]
 gi|315257385|gb|EFU37353.1| ribonuclease D [Escherichia coli MS 85-1]
 gi|323180583|gb|EFZ66128.1| ribonuclease D [Escherichia coli 1180]
          Length = 371

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|260855663|ref|YP_003229554.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
 gi|257754312|dbj|BAI25814.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
          Length = 375

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|15802217|ref|NP_288240.1| ribonuclease D [Escherichia coli O157:H7 EDL933]
 gi|12515844|gb|AAG56793.1|AE005403_4 RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
           EDL933]
          Length = 375

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|108760811|ref|YP_634116.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
 gi|108464691|gb|ABF89876.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
          Length = 389

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 7/150 (4%)

Query: 14  ECAARYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           E A R ++A   IAVD E   +   R RLC +QL+  D    +  +  G      L  ++
Sbjct: 18  ESATRTLEAAREIAVDLEADSMHAFRARLCFLQLATDDQVFLLDTLQPGVVPG-MLAPLM 76

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D  R K FH  + D+  L    GVRV+ +F T  A+ L      + GL D  +E LG+ 
Sbjct: 77  ADPARTKFFHAAQGDLQFL-AEVGVRVQGLFDTHRAATLL--GWPKVGLADLARERLGVE 133

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           + K  Q SD+S   L     +Y A+DV +L
Sbjct: 134 LPKEHQQSDFSIRPLPPGMREYIANDVRYL 163


>gi|16129758|ref|NP_416318.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655]
 gi|89108643|ref|AP_002423.1| ribonuclease D [Escherichia coli str. K-12 substr. W3110]
 gi|170081460|ref|YP_001730780.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B]
 gi|238901018|ref|YP_002926814.1| ribonuclease D [Escherichia coli BW2952]
 gi|301019362|ref|ZP_07183546.1| ribonuclease D [Escherichia coli MS 196-1]
 gi|133152|sp|P09155|RND_ECOLI RecName: Full=Ribonuclease D; Short=RNase D
 gi|75765643|pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An
           Exoribonuclease Involved In Structured Rna Processing
 gi|581215|emb|CAA30098.1| unnamed protein product [Escherichia coli]
 gi|1736427|dbj|BAA15599.1| ribonuclease D [Escherichia coli str. K12 substr. W3110]
 gi|1788105|gb|AAC74874.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655]
 gi|169889295|gb|ACB03002.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B]
 gi|238863466|gb|ACR65464.1| ribonuclease D [Escherichia coli BW2952]
 gi|299882254|gb|EFI90465.1| ribonuclease D [Escherichia coli MS 196-1]
 gi|309702026|emb|CBJ01340.1| ribonuclease D [Escherichia coli ETEC H10407]
 gi|315136445|dbj|BAJ43604.1| ribonuclease D [Escherichia coli DH1]
 gi|226093|prf||1410308A ribonuclease D
          Length = 375

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|170019851|ref|YP_001724805.1| ribonuclease D [Escherichia coli ATCC 8739]
 gi|256022532|ref|ZP_05436397.1| ribonuclease D [Escherichia sp. 4_1_40B]
 gi|293415119|ref|ZP_06657762.1| ribonuclease D [Escherichia coli B185]
 gi|300951410|ref|ZP_07165251.1| ribonuclease D [Escherichia coli MS 116-1]
 gi|300956696|ref|ZP_07168970.1| ribonuclease D [Escherichia coli MS 175-1]
 gi|301645686|ref|ZP_07245613.1| ribonuclease D [Escherichia coli MS 146-1]
 gi|307138464|ref|ZP_07497820.1| ribonuclease D [Escherichia coli H736]
 gi|331642413|ref|ZP_08343548.1| ribonuclease D [Escherichia coli H736]
 gi|331653208|ref|ZP_08354213.1| ribonuclease D [Escherichia coli M718]
 gi|169754779|gb|ACA77478.1| ribonuclease D [Escherichia coli ATCC 8739]
 gi|260449075|gb|ACX39497.1| ribonuclease D [Escherichia coli DH1]
 gi|291432767|gb|EFF05746.1| ribonuclease D [Escherichia coli B185]
 gi|300316496|gb|EFJ66280.1| ribonuclease D [Escherichia coli MS 175-1]
 gi|300449336|gb|EFK12956.1| ribonuclease D [Escherichia coli MS 116-1]
 gi|301076058|gb|EFK90864.1| ribonuclease D [Escherichia coli MS 146-1]
 gi|323937062|gb|EGB33342.1| ribonuclease D [Escherichia coli E1520]
 gi|323940530|gb|EGB36721.1| ribonuclease D [Escherichia coli E482]
 gi|331039211|gb|EGI11431.1| ribonuclease D [Escherichia coli H736]
 gi|331049306|gb|EGI21378.1| ribonuclease D [Escherichia coli M718]
 gi|332343528|gb|AEE56862.1| ribonuclease D [Escherichia coli UMNK88]
 gi|333006772|gb|EGK26269.1| ribonuclease D [Shigella flexneri K-272]
          Length = 371

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|310815760|ref|YP_003963724.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
 gi|308754495|gb|ADO42424.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
          Length = 388

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + VDTE L       +LC+VQL  S  D    ++   A   +   L  + ++    K+FH
Sbjct: 23  VTVDTEFLRERTYYAKLCLVQLAFSGPDADAALVDPLADGIDLKPLYDLFLNPAVVKVFH 82

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ +      V   P+F T++A+ +   Y  Q   +   +++   +I K  + +DW
Sbjct: 83  AARQDLEIFSVGQNVIPAPLFDTQVAAMVC-GYGEQVSYETLARKIAKADIDKTSRFTDW 141

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           S   LS+ Q +YA +DV HL  +    + ++ + GR+
Sbjct: 142 SRRPLSEAQKEYALADVTHLRQIYENLSAQIAKSGRA 178


>gi|301169093|emb|CBW28690.1| ribonuclease D [Haemophilus influenzae 10810]
          Length = 382

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  V +L + K  
Sbjct: 27  AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLSNPKVL 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V    F    RP+  T+I +R     T+  GL    ++ L + I K   
Sbjct: 85  KVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTS-AGLAKLAQQYLNVEIDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170


>gi|82776970|ref|YP_403319.1| ribonuclease D [Shigella dysenteriae Sd197]
 gi|81241118|gb|ABB61828.1| RNase D [Shigella dysenteriae Sd197]
          Length = 375

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|195937492|ref|ZP_03082874.1| ribonuclease D [Escherichia coli O157:H7 str. EC4024]
 gi|256018008|ref|ZP_05431873.1| ribonuclease D [Shigella sp. D9]
 gi|261227700|ref|ZP_05941981.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258135|ref|ZP_05950668.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK966]
 gi|293405300|ref|ZP_06649292.1| ribonuclease D [Escherichia coli FVEC1412]
 gi|298380942|ref|ZP_06990541.1| ribonuclease D [Escherichia coli FVEC1302]
 gi|300816311|ref|ZP_07096533.1| ribonuclease D [Escherichia coli MS 107-1]
 gi|300823140|ref|ZP_07103273.1| ribonuclease D [Escherichia coli MS 119-7]
 gi|300899043|ref|ZP_07117330.1| ribonuclease D [Escherichia coli MS 198-1]
 gi|300917626|ref|ZP_07134277.1| ribonuclease D [Escherichia coli MS 115-1]
 gi|300924870|ref|ZP_07140803.1| ribonuclease D [Escherichia coli MS 182-1]
 gi|307314118|ref|ZP_07593730.1| ribonuclease D [Escherichia coli W]
 gi|309794180|ref|ZP_07688604.1| ribonuclease D [Escherichia coli MS 145-7]
 gi|331663292|ref|ZP_08364202.1| ribonuclease D [Escherichia coli TA143]
 gi|331668492|ref|ZP_08369340.1| ribonuclease D [Escherichia coli TA271]
 gi|331673338|ref|ZP_08374106.1| ribonuclease D [Escherichia coli TA280]
 gi|331677680|ref|ZP_08378355.1| ribonuclease D [Escherichia coli H591]
 gi|291427508|gb|EFF00535.1| ribonuclease D [Escherichia coli FVEC1412]
 gi|298278384|gb|EFI19898.1| ribonuclease D [Escherichia coli FVEC1302]
 gi|300357343|gb|EFJ73213.1| ribonuclease D [Escherichia coli MS 198-1]
 gi|300415143|gb|EFJ98453.1| ribonuclease D [Escherichia coli MS 115-1]
 gi|300418949|gb|EFK02260.1| ribonuclease D [Escherichia coli MS 182-1]
 gi|300524294|gb|EFK45363.1| ribonuclease D [Escherichia coli MS 119-7]
 gi|300531001|gb|EFK52063.1| ribonuclease D [Escherichia coli MS 107-1]
 gi|306906256|gb|EFN36773.1| ribonuclease D [Escherichia coli W]
 gi|308122085|gb|EFO59347.1| ribonuclease D [Escherichia coli MS 145-7]
 gi|315061107|gb|ADT75434.1| ribonuclease D [Escherichia coli W]
 gi|320188500|gb|EFW63162.1| Ribonuclease D [Escherichia coli O157:H7 str. EC1212]
 gi|320197983|gb|EFW72591.1| Ribonuclease D [Escherichia coli EC4100B]
 gi|320641655|gb|EFX11043.1| ribonuclease D [Escherichia coli O157:H7 str. G5101]
 gi|320647014|gb|EFX15847.1| ribonuclease D [Escherichia coli O157:H- str. 493-89]
 gi|320652296|gb|EFX20594.1| ribonuclease D [Escherichia coli O157:H- str. H 2687]
 gi|320657898|gb|EFX25660.1| ribonuclease D [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658471|gb|EFX26165.1| ribonuclease D [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668369|gb|EFX35196.1| ribonuclease D [Escherichia coli O157:H7 str. LSU-61]
 gi|323158715|gb|EFZ44729.1| ribonuclease D [Escherichia coli E128010]
 gi|323186449|gb|EFZ71797.1| ribonuclease D [Escherichia coli 1357]
 gi|323378318|gb|ADX50586.1| ribonuclease D [Escherichia coli KO11]
 gi|323948311|gb|EGB44299.1| ribonuclease D [Escherichia coli H120]
 gi|324018061|gb|EGB87280.1| ribonuclease D [Escherichia coli MS 117-3]
 gi|324118864|gb|EGC12753.1| ribonuclease D [Escherichia coli E1167]
 gi|326342179|gb|EGD65960.1| Ribonuclease D [Escherichia coli O157:H7 str. 1044]
 gi|326343729|gb|EGD67491.1| Ribonuclease D [Escherichia coli O157:H7 str. 1125]
 gi|331059091|gb|EGI31068.1| ribonuclease D [Escherichia coli TA143]
 gi|331063686|gb|EGI35597.1| ribonuclease D [Escherichia coli TA271]
 gi|331069536|gb|EGI40923.1| ribonuclease D [Escherichia coli TA280]
 gi|331074140|gb|EGI45460.1| ribonuclease D [Escherichia coli H591]
          Length = 371

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|253773243|ref|YP_003036074.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|297516497|ref|ZP_06934883.1| ribonuclease D [Escherichia coli OP50]
 gi|300927881|ref|ZP_07143442.1| ribonuclease D [Escherichia coli MS 187-1]
 gi|312969840|ref|ZP_07784023.1| ribonuclease D [Escherichia coli 1827-70]
 gi|253324287|gb|ACT28889.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|300464070|gb|EFK27563.1| ribonuclease D [Escherichia coli MS 187-1]
 gi|310338125|gb|EFQ03214.1| ribonuclease D [Escherichia coli 1827-70]
 gi|323961858|gb|EGB57457.1| ribonuclease D [Escherichia coli H489]
 gi|323972689|gb|EGB67892.1| ribonuclease D [Escherichia coli TA007]
          Length = 371

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|333003670|gb|EGK23206.1| ribonuclease D [Shigella flexneri VA-6]
          Length = 371

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRADWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|320194484|gb|EFW69115.1| Ribonuclease D [Escherichia coli WV_060327]
          Length = 375

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|15831767|ref|NP_310540.1| ribonuclease D [Escherichia coli O157:H7 str. Sakai]
 gi|157156075|ref|YP_001463104.1| ribonuclease D [Escherichia coli E24377A]
 gi|187776027|ref|ZP_02799888.2| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
 gi|188024852|ref|ZP_02774388.2| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
 gi|189010430|ref|ZP_02807242.2| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
 gi|189402540|ref|ZP_02783120.2| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
 gi|189403490|ref|ZP_02795783.2| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
 gi|189404421|ref|ZP_02789258.2| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
 gi|189405084|ref|ZP_02813223.2| ribonuclease D [Escherichia coli O157:H7 str. EC869]
 gi|189406051|ref|ZP_02826040.2| ribonuclease D [Escherichia coli O157:H7 str. EC508]
 gi|191168835|ref|ZP_03030609.1| ribonuclease D [Escherichia coli B7A]
 gi|193066361|ref|ZP_03047410.1| ribonuclease D [Escherichia coli E22]
 gi|193071290|ref|ZP_03052209.1| ribonuclease D [Escherichia coli E110019]
 gi|194430003|ref|ZP_03062510.1| ribonuclease D [Escherichia coli B171]
 gi|208810493|ref|ZP_03252369.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
 gi|208816683|ref|ZP_03257803.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
 gi|208818758|ref|ZP_03259078.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
 gi|209396542|ref|YP_002270881.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
 gi|209919169|ref|YP_002293253.1| ribonuclease D [Escherichia coli SE11]
 gi|217328853|ref|ZP_03444934.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
 gi|218554376|ref|YP_002387289.1| ribonuclease D [Escherichia coli IAI1]
 gi|218695366|ref|YP_002403033.1| ribonuclease D [Escherichia coli 55989]
 gi|218705302|ref|YP_002412821.1| ribonuclease D [Escherichia coli UMN026]
 gi|254793426|ref|YP_003078263.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
 gi|260844148|ref|YP_003221926.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
 gi|291282984|ref|YP_003499802.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615]
 gi|293446176|ref|ZP_06662598.1| ribonuclease D [Escherichia coli B088]
 gi|332279045|ref|ZP_08391458.1| ribonuclease D [Shigella sp. D9]
 gi|13361980|dbj|BAB35936.1| RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
           Sakai]
 gi|157078105|gb|ABV17813.1| ribonuclease D [Escherichia coli E24377A]
 gi|187769404|gb|EDU33248.1| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
 gi|188016291|gb|EDU54413.1| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
 gi|189000217|gb|EDU69203.1| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
 gi|189355025|gb|EDU73444.1| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
 gi|189360343|gb|EDU78762.1| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
 gi|189365729|gb|EDU84145.1| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
 gi|189371954|gb|EDU90370.1| ribonuclease D [Escherichia coli O157:H7 str. EC869]
 gi|189376734|gb|EDU95150.1| ribonuclease D [Escherichia coli O157:H7 str. EC508]
 gi|190901115|gb|EDV60890.1| ribonuclease D [Escherichia coli B7A]
 gi|192926009|gb|EDV80654.1| ribonuclease D [Escherichia coli E22]
 gi|192955385|gb|EDV85869.1| ribonuclease D [Escherichia coli E110019]
 gi|194411930|gb|EDX28245.1| ribonuclease D [Escherichia coli B171]
 gi|208725009|gb|EDZ74716.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
 gi|208731026|gb|EDZ79715.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
 gi|208738881|gb|EDZ86563.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
 gi|209157942|gb|ACI35375.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
 gi|209768038|gb|ACI82331.1| RNase D [Escherichia coli]
 gi|209768040|gb|ACI82332.1| RNase D [Escherichia coli]
 gi|209768042|gb|ACI82333.1| RNase D [Escherichia coli]
 gi|209768044|gb|ACI82334.1| RNase D [Escherichia coli]
 gi|209768046|gb|ACI82335.1| RNase D [Escherichia coli]
 gi|209912428|dbj|BAG77502.1| ribonuclease D [Escherichia coli SE11]
 gi|217318200|gb|EEC26627.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
 gi|218352098|emb|CAU97835.1| ribonuclease D [Escherichia coli 55989]
 gi|218361144|emb|CAQ98727.1| ribonuclease D [Escherichia coli IAI1]
 gi|218432399|emb|CAR13290.1| ribonuclease D [Escherichia coli UMN026]
 gi|254592826|gb|ACT72187.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
 gi|257759295|dbj|BAI30792.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
 gi|290762857|gb|ADD56818.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615]
 gi|291323006|gb|EFE62434.1| ribonuclease D [Escherichia coli B088]
 gi|332101397|gb|EGJ04743.1| ribonuclease D [Shigella sp. D9]
          Length = 375

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|109899113|ref|YP_662368.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
 gi|109701394|gb|ABG41314.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
          Length = 400

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 7/157 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           AIAVDTE +       +L ++Q+  G     +D + I+    +   L  +L DE   K+ 
Sbjct: 34  AIAVDTEFVRTRTLYPQLGLIQIYDGQQIALIDPLEIS----DFTALKAILTDENIVKVL 89

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    DI        +  RP+F ++ A+ +T    +  G    ++ +L I + K +  +D
Sbjct: 90  HSCSEDIETFICALDIVPRPIFDSQFAAAITGMGPS-LGYAKLVEVMLDIQVDKGESRTD 148

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           W A  LS +Q QYAA DV++L  L     +K    GR
Sbjct: 149 WLARPLSPKQCQYAAYDVLYLFQLYPTLCDKTLAQGR 185


>gi|260868323|ref|YP_003234725.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
 gi|257764679|dbj|BAI36174.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
          Length = 375

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|26248062|ref|NP_754102.1| ribonuclease D [Escherichia coli CFT073]
 gi|91211019|ref|YP_541005.1| ribonuclease D [Escherichia coli UTI89]
 gi|215487015|ref|YP_002329446.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69]
 gi|218558666|ref|YP_002391579.1| ribonuclease D [Escherichia coli S88]
 gi|218689740|ref|YP_002397952.1| ribonuclease D [Escherichia coli ED1a]
 gi|26108465|gb|AAN80667.1|AE016761_242 Ribonuclease D [Escherichia coli CFT073]
 gi|91072593|gb|ABE07474.1| ribonuclease D [Escherichia coli UTI89]
 gi|215265087|emb|CAS09475.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69]
 gi|218365435|emb|CAR03162.1| ribonuclease D [Escherichia coli S88]
 gi|218427304|emb|CAR08103.1| ribonuclease D [Escherichia coli ED1a]
 gi|294489955|gb|ADE88711.1| ribonuclease D [Escherichia coli IHE3034]
          Length = 375

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|301026544|ref|ZP_07189972.1| ribonuclease D [Escherichia coli MS 69-1]
 gi|300395475|gb|EFJ79013.1| ribonuclease D [Escherichia coli MS 69-1]
          Length = 371

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPIS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|323175119|gb|EFZ60733.1| ribonuclease D [Escherichia coli LT-68]
          Length = 375

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|157161268|ref|YP_001458586.1| ribonuclease D [Escherichia coli HS]
 gi|188495947|ref|ZP_03003217.1| ribonuclease D [Escherichia coli 53638]
 gi|194439630|ref|ZP_03071702.1| ribonuclease D [Escherichia coli 101-1]
 gi|254161863|ref|YP_003044971.1| ribonuclease D [Escherichia coli B str. REL606]
 gi|157066948|gb|ABV06203.1| ribonuclease D [Escherichia coli HS]
 gi|188491146|gb|EDU66249.1| ribonuclease D [Escherichia coli 53638]
 gi|194421451|gb|EDX37466.1| ribonuclease D [Escherichia coli 101-1]
 gi|242377525|emb|CAQ32279.1| RNase D [Escherichia coli BL21(DE3)]
 gi|253973764|gb|ACT39435.1| ribonuclease D [Escherichia coli B str. REL606]
 gi|253977958|gb|ACT43628.1| ribonuclease D [Escherichia coli BL21(DE3)]
          Length = 375

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|148825327|ref|YP_001290080.1| ribonuclease D [Haemophilus influenzae PittEE]
 gi|148715487|gb|ABQ97697.1| translation-associated GTPase [Haemophilus influenzae PittEE]
          Length = 380

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  + +L + K  
Sbjct: 27  AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FIALLANPKVL 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R         GL    ++ L I I K   
Sbjct: 85  KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNIEIDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            ++W    LSD QLQYAA DV +L  L     ++L +       +  C   + +
Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALSK 197


>gi|238788499|ref|ZP_04632292.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641]
 gi|238723412|gb|EEQ15059.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641]
          Length = 394

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    +A+DTE +       +L ++QL  G+    +D + I   Q        +L D  
Sbjct: 40  ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRELLQDLN 95

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    FG+   P+  T++ +  + RT +   G    + E  G+ + K
Sbjct: 96  VVKYLHAGSEDLEVFLNAFGLMPTPMIDTQVLAAFSGRTLSC--GFAMLVNEFEGVELDK 153

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +     +   R D A   C  L  R
Sbjct: 154 SESRTDWIARPLSEKQCDYAAADVFYLLPLATKLVAATEAAERMDAAIDECQLLCRR 210


>gi|320181157|gb|EFW56076.1| Ribonuclease D [Shigella boydii ATCC 9905]
 gi|332089922|gb|EGI95022.1| ribonuclease D [Shigella boydii 5216-82]
 gi|332093315|gb|EGI98374.1| ribonuclease D [Shigella dysenteriae 155-74]
          Length = 371

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKSILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|281178870|dbj|BAI55200.1| ribonuclease D [Escherichia coli SE15]
          Length = 375

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|262041917|ref|ZP_06015100.1| ribonuclease D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259040723|gb|EEW41811.1| ribonuclease D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 371

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AA    A+A+DTE +       +L ++QL  G   V +I        AP +  +L+++  
Sbjct: 14  AASTASAVALDTEFVRTRTYYPQLGLLQLFDGQ-QVSLIDPLTINDWAP-MRDLLLNQDV 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    F +  +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  Q   +  R G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQR 185


>gi|326795603|ref|YP_004313423.1| ribonuclease D [Marinomonas mediterranea MMB-1]
 gi|326546367|gb|ADZ91587.1| ribonuclease D [Marinomonas mediterranea MMB-1]
          Length = 383

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 9/171 (5%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           ++ IAVDTE L          ++Q+S G+  V +I      + AP L  ++V+    K+F
Sbjct: 29  LNVIAVDTEFLRRTTYYPITGLIQISEGEKAV-LIDPQTITEWAP-LKDLMVNLDVMKVF 86

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL---LGINISKAQQ 136
           H    D+ V     GV   P + T+I       Y N       +K +   L I ++K + 
Sbjct: 87  HACSEDLDVFDRLLGVLPTPFYDTQIG----EAYANGQWSVSYVKLIQAYLSIEVAKDET 142

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            SDW+   L++ Q +YAA DVV+L  +  Q  E LQ+    D A   C+ L
Sbjct: 143 RSDWTVRPLTEAQKRYAALDVVYLAKVYPQQIEMLQKKNMLDWALEDCDTL 193


>gi|254226821|ref|ZP_04920393.1| ribonuclease D [Vibrio cholerae V51]
 gi|125620668|gb|EAZ49030.1| ribonuclease D [Vibrio cholerae V51]
          Length = 381

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 18  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVLDEMTP-FV 75

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 76  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G
Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTQAG 182


>gi|198244835|ref|YP_002215323.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197939351|gb|ACH76684.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 375

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 18  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189


>gi|152970868|ref|YP_001335977.1| ribonuclease D [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150955717|gb|ABR77747.1| RNase D, processes tRNA precursor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 371

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AA    A+A+DTE +       +L ++QL  G   V +I        AP +  +L+++  
Sbjct: 14  AASTASAVALDTEFVRTRTYYPQLGLLQLFDGQ-QVSLIDPLTINDWAP-MRDLLLNQDV 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    F +  +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  Q   +  R G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQR 185


>gi|51596384|ref|YP_070575.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953]
 gi|149365996|ref|ZP_01888031.1| ribonuclease D [Yersinia pestis CA88-4125]
 gi|153949850|ref|YP_001400986.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758]
 gi|162421744|ref|YP_001606825.1| ribonuclease D [Yersinia pestis Angola]
 gi|165928352|ref|ZP_02224184.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938856|ref|ZP_02227410.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009317|ref|ZP_02230215.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166210648|ref|ZP_02236683.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401505|ref|ZP_02307002.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420357|ref|ZP_02312110.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424411|ref|ZP_02316164.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|170024358|ref|YP_001720863.1| ribonuclease D [Yersinia pseudotuberculosis YPIII]
 gi|218929182|ref|YP_002347057.1| ribonuclease D [Yersinia pestis CO92]
 gi|229894791|ref|ZP_04509971.1| ribonuclease D [Yersinia pestis Pestoides A]
 gi|229898140|ref|ZP_04513289.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902002|ref|ZP_04517123.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|270490819|ref|ZP_06207893.1| ribonuclease D [Yersinia pestis KIM D27]
 gi|294503859|ref|YP_003567921.1| ribonuclease D [Yersinia pestis Z176003]
 gi|51589666|emb|CAH21296.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953]
 gi|115347793|emb|CAL20710.1| ribonuclease D [Yersinia pestis CO92]
 gi|149292409|gb|EDM42483.1| ribonuclease D [Yersinia pestis CA88-4125]
 gi|152961345|gb|ABS48806.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758]
 gi|162354559|gb|ABX88507.1| ribonuclease D [Yersinia pestis Angola]
 gi|165913219|gb|EDR31842.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919635|gb|EDR36968.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991872|gb|EDR44173.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207828|gb|EDR52308.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962052|gb|EDR58073.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049201|gb|EDR60609.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056293|gb|EDR66062.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169750892|gb|ACA68410.1| ribonuclease D [Yersinia pseudotuberculosis YPIII]
 gi|229680898|gb|EEO76993.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|229688856|gb|EEO80923.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195]
 gi|229702264|gb|EEO90283.1| ribonuclease D [Yersinia pestis Pestoides A]
 gi|262362022|gb|ACY58743.1| ribonuclease D [Yersinia pestis D106004]
 gi|262365841|gb|ACY62398.1| ribonuclease D [Yersinia pestis D182038]
 gi|270339323|gb|EFA50100.1| ribonuclease D [Yersinia pestis KIM D27]
 gi|294354318|gb|ADE64659.1| ribonuclease D [Yersinia pestis Z176003]
 gi|320015246|gb|ADV98817.1| ribonuclease D [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 373

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    IA+DTE +       +L ++QL  G+    +D + I   Q        +L D  
Sbjct: 19  ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRALLQDLN 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F     P+  T++ +  + R+ +   G    + E  G+ + K
Sbjct: 75  VVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFSGRSLSC--GFAMLVAEFEGVELDK 132

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 133 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 189


>gi|238895380|ref|YP_002920115.1| ribonuclease D [Klebsiella pneumoniae NTUH-K2044]
 gi|238547697|dbj|BAH64048.1| ribonuclease D [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 375

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AA    A+A+DTE +       +L ++QL  G   V +I        AP +  +L+++  
Sbjct: 18  AASTASAVALDTEFVRTRTYYPQLGLLQLFDGQ-QVSLIDPLTINDWAP-MRDLLLNQDV 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    F +  +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  Q   +  R G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQR 189


>gi|332307210|ref|YP_004435061.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174539|gb|AEE23793.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 391

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 7/158 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           +AIAVDTE +       +L ++Q+  G     +D + I+    +   L  +L DE   K+
Sbjct: 23  EAIAVDTEFVRTRTLYPKLGLIQIYDGQQIALIDPLEIS----DFSALKAILTDENIVKV 78

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    DI        +  +P+F ++ A+ +     +  G    ++ +L I + K +  +
Sbjct: 79  LHSCSEDIETFICALDIVPKPIFDSQFAAAIVGMGAS-LGYAKLVEVMLDIQVDKGESRT 137

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           DW A  LS EQ +YAA DV++L+ L     +K +  GR
Sbjct: 138 DWLARPLSPEQCRYAAYDVLYLYQLYPTLRDKARAQGR 175


>gi|331647298|ref|ZP_08348392.1| ribonuclease D [Escherichia coli M605]
 gi|330911610|gb|EGH40120.1| ribonuclease D [Escherichia coli AA86]
 gi|331044081|gb|EGI16217.1| ribonuclease D [Escherichia coli M605]
          Length = 371

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNIFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|330000265|ref|ZP_08303673.1| ribonuclease D [Klebsiella sp. MS 92-3]
 gi|328538027|gb|EGF64198.1| ribonuclease D [Klebsiella sp. MS 92-3]
          Length = 372

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AA    A+A+DTE +       +L ++QL  G   V +I        AP +  +L+++  
Sbjct: 15  AASTASAVALDTEFVRTRTYYPQLGLLQLFDGQ-QVSLIDPLTINDWAP-MRDLLLNQDV 72

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    F +  +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 73  TKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKS 130

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  Q   +  R G    A   C  +  R
Sbjct: 131 ESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQR 186


>gi|194434924|ref|ZP_03067168.1| ribonuclease D [Shigella dysenteriae 1012]
 gi|194416812|gb|EDX32937.1| ribonuclease D [Shigella dysenteriae 1012]
          Length = 375

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 6/180 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKSILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL-MDRAEL 193
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  + M R E+
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEV 193


>gi|195873245|ref|ZP_02696622.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634367|gb|EDX52719.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 375

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 18  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189


>gi|22126121|ref|NP_669544.1| ribonuclease D [Yersinia pestis KIM 10]
 gi|45441720|ref|NP_993259.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001]
 gi|108807454|ref|YP_651370.1| ribonuclease D [Yersinia pestis Antiqua]
 gi|108811715|ref|YP_647482.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|145598343|ref|YP_001162419.1| ribonuclease D [Yersinia pestis Pestoides F]
 gi|167469552|ref|ZP_02334256.1| ribonuclease D [Yersinia pestis FV-1]
 gi|186895427|ref|YP_001872539.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+]
 gi|21959080|gb|AAM85795.1|AE013826_7 RNase D [Yersinia pestis KIM 10]
 gi|45436582|gb|AAS62136.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001]
 gi|108775363|gb|ABG17882.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|108779367|gb|ABG13425.1| ribonuclease D [Yersinia pestis Antiqua]
 gi|145210039|gb|ABP39446.1| ribonuclease D [Yersinia pestis Pestoides F]
 gi|186698453|gb|ACC89082.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+]
          Length = 386

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    IA+DTE +       +L ++QL  G+    +D + I   Q        +L D  
Sbjct: 32  ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRALLQDLN 87

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F     P+  T++ +  + R+ +   G    + E  G+ + K
Sbjct: 88  VVKYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFSGRSLSC--GFAMLVAEFEGVELDK 145

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 146 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 202


>gi|205352517|ref|YP_002226318.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205359829|ref|ZP_02832566.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|207856676|ref|YP_002243327.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205272298|emb|CAR37177.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205342684|gb|EDZ29448.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206708479|emb|CAR32800.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627575|gb|EGE33918.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 375

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 18  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189


>gi|238754880|ref|ZP_04616230.1| Ribonuclease D [Yersinia ruckeri ATCC 29473]
 gi|238706891|gb|EEP99258.1| Ribonuclease D [Yersinia ruckeri ATCC 29473]
          Length = 373

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR+   +A+DTE +       +L ++QL  G+    +D + I   Q        +L D+ 
Sbjct: 19  ARHHAQVALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLPITEWQP----FRELLQDQS 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F     P+  T++ +  T RT +   G    + EL G+ + K
Sbjct: 75  VVKFLHAGSEDLEVFLNAFQQLPTPMIDTQVLAAFTGRTLSC--GFAMLVAELQGVELDK 132

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  L+++Q  YAA+DV +L  +  Q     +  GR   A   C  L  R
Sbjct: 133 SESRTDWLARPLTEKQCDYAAADVFYLLPMAQQLVAATEAAGRMAAAEDECLLLCRR 189


>gi|62180380|ref|YP_216797.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194734944|ref|YP_002114851.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197248423|ref|YP_002146207.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197301010|ref|ZP_02662940.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|205360221|ref|ZP_02681919.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|62128013|gb|AAX65716.1| RNase D, processes tRNA precursor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194710446|gb|ACF89667.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197212126|gb|ACH49523.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197289302|gb|EDY28669.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|205350690|gb|EDZ37321.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|322714855|gb|EFZ06426.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 375

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 18  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189


>gi|224583693|ref|YP_002637491.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238912118|ref|ZP_04655955.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|224468220|gb|ACN46050.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 371

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 14  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185


>gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.]
          Length = 382

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 8/167 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           I  D E   +    +++C++Q++  +    +D I++    K    L  +  D +  KIFH
Sbjct: 31  IGFDLEADSMHHFPEKVCLLQVATKNCIFVIDTIKL----KELSLLKPIFADNEITKIFH 86

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+  LF  F + +  +F +++ASR       + GL+  ++    + + K     DW
Sbjct: 87  GADYDVRSLFRDFNIEINNLFDSELASRFLGV--KETGLEAVIRHRFNVYLEKKFTKRDW 144

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           S   L D+ L YAA DV +L  L     ++L  +GR       C+ L
Sbjct: 145 SKRPLIDDMLHYAADDVRYLVPLYEILEKELNDIGRLFWVKEECDIL 191


>gi|205357371|ref|ZP_02347252.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205322073|gb|EDZ09912.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 375

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 18  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 189


>gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
 gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
          Length = 382

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVD E   L   R+++C++Q+S    +  I  +A   K+   L   L +     + H  
Sbjct: 33  VAVDLEMDSLHHYREKVCLIQISTRTESWLIDPLAL--KDLSPLAAPLGNRDILIVMHGA 90

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +DI  L    G+ V  +F T IASRL      + GL   LK   GI ++K  Q +DWS 
Sbjct: 91  DYDIRSLHRDHGIEVTNLFDTMIASRLL--GITEFGLAALLKARFGIELNKKYQKADWSK 148

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             LS E   YA +D   L  L     ++L   GR
Sbjct: 149 RPLSPEMRAYAVADTADLLRLYDMLRDELLEKGR 182


>gi|320085676|emb|CBY95454.1| RNase D, processes tRNA precursor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 371

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 14  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185


>gi|262404337|ref|ZP_06080892.1| ribonuclease D [Vibrio sp. RC586]
 gi|262349369|gb|EEY98507.1| ribonuclease D [Vibrio sp. RC586]
          Length = 381

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 18  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVMDEMTP-FV 75

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 76  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++   G
Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAG 182


>gi|326623067|gb|EGE29412.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 371

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 14  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFAAMVEEYTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185


>gi|26991275|ref|NP_746700.1| ribonuclease D [Pseudomonas putida KT2440]
 gi|24986330|gb|AAN70164.1|AE016655_9 ribonuclease D [Pseudomonas putida KT2440]
          Length = 377

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 17/148 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           +AVDTE + +     +  ++Q+  GDG     +D + I   Q     L  +L D    K+
Sbjct: 27  VAVDTEFMRVDTFYPKAGLIQI--GDGQRAFLIDPLLIGNWQP----LADLLEDSAVVKV 80

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQ 135
            H    D+ VL    G   +P+F T++A+     Y N     G    ++E+LGI + K +
Sbjct: 81  LHACSEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQEVLGIELPKGE 136

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHAL 163
             SDW    LS+ Q+ YAA D VHL  L
Sbjct: 137 TRSDWLQRPLSETQVSYAAEDAVHLAEL 164


>gi|145634613|ref|ZP_01790322.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
 gi|145268158|gb|EDK08153.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
          Length = 362

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  V +L + K  
Sbjct: 9   AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FVALLANPKVL 66

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R         GL    ++ L + I K   
Sbjct: 67  KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNVEIDKGAT 125

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 126 RTNWIKRPLSDIQLQYAAGDVWYLLPL 152


>gi|283785541|ref|YP_003365406.1| ribonuclease D [Citrobacter rodentium ICC168]
 gi|282948995|emb|CBG88598.1| ribonuclease D [Citrobacter rodentium ICC168]
          Length = 377

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I     G  +   L  +L D   
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGERVALID--PHGISDWSPLKAILRDTAI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKYLHAGSEDLEVFLNAFGELPQPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPIAGKLMAETEAAGWLPAALDECRLMQQR 189


>gi|301327561|ref|ZP_07220781.1| ribonuclease D [Escherichia coli MS 78-1]
 gi|300845871|gb|EFK73631.1| ribonuclease D [Escherichia coli MS 78-1]
          Length = 371

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQREYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|113460879|ref|YP_718946.1| ribonuclease D [Haemophilus somnus 129PT]
 gi|112822922|gb|ABI25011.1| ribonuclease D [Haemophilus somnus 129PT]
          Length = 381

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 4/172 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+    IA+DTE +       +L ++QL  G+  V +I        +P  + +L ++K  
Sbjct: 30  AQQKTVIALDTEFVRTKSFYPKLGLIQLYDGE-QVSLIDPFELSDFSP-FIQLLANQKVT 87

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  + F     P+  T+I +   + + N  GL   LK    + I K   
Sbjct: 88  KVLHACSEDLEVFQHYFQQLPTPMLDTQIMAAFLQ-HGNSIGLAILLKHYFKLEIDKGIS 146

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSDLATSCCNFL 187
            ++W A  LSD QL YAA+DV +L  L  +  +KL Q   +S +   C N L
Sbjct: 147 RTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTSWQSAVQNDCENLL 198


>gi|258621252|ref|ZP_05716286.1| ribonuclease D [Vibrio mimicus VM573]
 gi|258586640|gb|EEW11355.1| ribonuclease D [Vibrio mimicus VM573]
          Length = 373

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 10  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVINEMTP-FV 67

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 68  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 126

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++   G
Sbjct: 127 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAG 174


>gi|161503057|ref|YP_001570169.1| ribonuclease D [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864404|gb|ABX21027.1| hypothetical protein SARI_01122 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 371

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 7/177 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEK 74
           A R   AIA+DTE +       +L ++QL  G    D+  I   G  +   L  +L D  
Sbjct: 14  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDG---ADVALIDPLGITDWSPLKAVLRDTG 70

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K
Sbjct: 71  ITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDK 128

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 129 SESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQR 185


>gi|325277926|ref|ZP_08143467.1| ribonuclease D [Pseudomonas sp. TJI-51]
 gi|324096941|gb|EGB95246.1| ribonuclease D [Pseudomonas sp. TJI-51]
          Length = 377

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 9/144 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTE + +     +  ++Q+  G     I  +  G  N   L  +L +    K+ H  
Sbjct: 27  VAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLAELLENSGVVKVLHAC 84

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139
             D+ VL    G   +P+F T++A+     Y N     G    ++E+LGI++ K +  SD
Sbjct: 85  SEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQEVLGIDLPKGETRSD 140

Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163
           W    LSD Q+ YAA D VHL  L
Sbjct: 141 WLQRPLSDTQVSYAAEDAVHLAEL 164


>gi|167035116|ref|YP_001670347.1| ribonuclease D [Pseudomonas putida GB-1]
 gi|166861604|gb|ABZ00012.1| ribonuclease D [Pseudomonas putida GB-1]
          Length = 377

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 20/159 (12%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           +AVDTE + +     +  ++Q+  GDG     +D + I   Q     L  +L D    K+
Sbjct: 27  VAVDTEFMRVDTFYPKAGLIQI--GDGQRAFLIDPLLIGDWQP----LADLLEDSGVVKV 80

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQ 135
            H    D+ VL    G   +P+F T++A+     Y N     G    ++++LGI + K +
Sbjct: 81  LHACSEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQDVLGIELPKGE 136

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
             SDW    LS+ Q+ YAA D VHL  L   FTE   RL
Sbjct: 137 TRSDWLQRPLSETQVSYAAEDAVHLAEL---FTELRPRL 172


>gi|71898238|ref|ZP_00680412.1| Ribonuclease D [Xylella fastidiosa Ann-1]
 gi|71731977|gb|EAO34034.1| Ribonuclease D [Xylella fastidiosa Ann-1]
          Length = 339

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           L +VQ++  D  + +  +  G  +A  L   L      KI H    D+    Y  GV  R
Sbjct: 15  LALVQIAIEDEILLVDPLVPGMTDALGL--WLAAPNVIKIMHSASEDLIAFKYACGVLPR 72

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
           P+F T+I +          G +  + ++  + + K +  SDW    L+  QL YAA+DV 
Sbjct: 73  PLFDTQIGAA-LTGLGGGMGYQKLVAKVTNVELGKGETRSDWMHRPLTPAQLDYAANDVR 131

Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           +L  L    TE+L  + RS      C  L D  E
Sbjct: 132 YLFVLHDTLTERLAEMSRSAWLEEDCTRLTDNIE 165


>gi|148546540|ref|YP_001266642.1| ribonuclease D [Pseudomonas putida F1]
 gi|148510598|gb|ABQ77458.1| ribonuclease D [Pseudomonas putida F1]
          Length = 377

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 9/144 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTE + +     +  ++Q+  G     I  +  G  N   L  +L D    K+ H  
Sbjct: 27  VAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLADLLEDSGVVKVLHAC 84

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139
             D+ VL    G   +P+F T++A+     Y N     G    ++E+LGI + K +  SD
Sbjct: 85  SEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQEVLGIELPKGETRSD 140

Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163
           W    LS+ Q+ YAA D VHL  L
Sbjct: 141 WLQRPLSETQVSYAAEDAVHLAEL 164


>gi|307131134|ref|YP_003883150.1| ribonuclease D [Dickeya dadantii 3937]
 gi|306528663|gb|ADM98593.1| ribonuclease D [Dickeya dadantii 3937]
          Length = 373

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 7/189 (3%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   EG + A CA A  V  +A+DTE +       +L ++QL  GD  + +I   A +  
Sbjct: 6   ITTDEG-LSAVCAQACAVSEVALDTEFVRTRTYYPQLGLIQLYDGD-NLSLIDPLAIRDW 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKD 121
           AP    +L + +  K  H G  D+ V    FG    P   T+I A+ L +  +  +G   
Sbjct: 64  AP-FRALLQNPQVTKFLHAGSEDLEVFLNAFGGLPSPFIDTQILAAFLGKPLS--YGFAA 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            + +   + + K++  +DW A  LS++Q QYAA+DV +L  +     E+ +  G  + A 
Sbjct: 121 LVADYRQVALDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARTLVEETRAAGWLEAAL 180

Query: 182 SCCNFLMDR 190
             C  L  R
Sbjct: 181 DECLLLCQR 189


>gi|302866117|ref|YP_003834754.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029]
 gi|315502675|ref|YP_004081562.1| 3'-5' exonuclease [Micromonospora sp. L5]
 gi|302568976|gb|ADL45178.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029]
 gi|315409294|gb|ADU07411.1| 3'-5' exonuclease [Micromonospora sp. L5]
          Length = 439

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+A L    G+R R +F T++A+RL      + GL    ++LLG ++ K  
Sbjct: 126 EWVLHAASQDLACL-AEVGLRPRRLFDTELAARLA--GFERVGLAALTEQLLGFSLEKHH 182

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            ++DWS+  L +  L YAA DV  L  LR    E+LQR G+S  A    + L+
Sbjct: 183 SAADWSSRPLPESWLTYAALDVELLVDLRDSLDEELQRQGKSGWAAEEFDALV 235


>gi|313497620|gb|ADR58986.1| Rnd [Pseudomonas putida BIRD-1]
          Length = 377

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 17/148 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           +AVDTE + +     +  ++Q+  GDG     +D + I   Q     L  +L D    K+
Sbjct: 27  VAVDTEFMRVDTFYPKAGLIQI--GDGQRAFLIDPLLIGNWQP----LADLLEDSGVVKV 80

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQ 135
            H    D+ VL    G   +P+F T++A+     Y N     G    ++E+LGI + K +
Sbjct: 81  LHACSEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQEVLGIELPKGE 136

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHAL 163
             SDW    LS+ Q+ YAA D VHL  L
Sbjct: 137 TRSDWLQRPLSETQVSYAAEDAVHLAEL 164


>gi|197285028|ref|YP_002150900.1| ribonuclease D [Proteus mirabilis HI4320]
 gi|194682515|emb|CAR42495.1| ribonuclease D [Proteus mirabilis HI4320]
          Length = 372

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AA  V  IA+DTE + +      L ++Q+  G   + +I      +  P  V +L +   
Sbjct: 18  AASEVSQIALDTEFVRIRTYYPHLGLIQMYDGK-QISLIDPLTITEWTP-FVELLTNPAV 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K  H G  D+ V  + FG    P+  T++ +     Y    G    +++   I + K++
Sbjct: 76  LKYLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GYPISCGFATLVEKYEHIALDKSE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             +DW A  L+++Q QYA+ DV +L  L  +   + Q  G  D     C  + +R
Sbjct: 135 SRTDWLARPLTEKQCQYASGDVFYLLPLAKKLIAQAQEAGYMDAIVDECEMIAER 189


>gi|238796317|ref|ZP_04639826.1| Ribonuclease D [Yersinia mollaretii ATCC 43969]
 gi|238719762|gb|EEQ11569.1| Ribonuclease D [Yersinia mollaretii ATCC 43969]
          Length = 395

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    +A+DTE +       +L ++QL  G+    +D + I   Q        +L D  
Sbjct: 41  ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRELLQDLN 96

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F     P+  T++ +  + R+ +   G    + E  G+ + K
Sbjct: 97  VVKYLHAGSEDLEVFLNAFDRMPTPMIDTQVLAAFSGRSLSC--GFAMLVNEFEGVELDK 154

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 155 SESRTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDECELLCRR 211


>gi|332141837|ref|YP_004427575.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551859|gb|AEA98577.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
          Length = 385

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 3/161 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AA+  +A+A+DTE +        L ++QL  G   V I  +A    N    V +L + + 
Sbjct: 18  AAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAID--NMQPFVALLENTEV 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    D+      F     PVF T+IA  +     +  G    ++ L  I++ K +
Sbjct: 76  VKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDMGPSL-GYAKLVELLCEISLDKGE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             +DW A  L + QL YAA+DV++L     Q    +Q LG+
Sbjct: 135 SRTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGK 175


>gi|227355430|ref|ZP_03839826.1| ribonuclease D [Proteus mirabilis ATCC 29906]
 gi|227164417|gb|EEI49301.1| ribonuclease D [Proteus mirabilis ATCC 29906]
          Length = 399

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AA  V  IA+DTE + +      L ++Q+  G   + +I      +  P  V +L +   
Sbjct: 45  AASEVSQIALDTEFVRIRTYYPHLGLIQMYDGK-QISLIDPLTITEWTP-FVELLTNPAV 102

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K  H G  D+ V  + FG    P+  T++ +     Y    G    +++   I + K++
Sbjct: 103 LKYLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GYPISCGFATLVEKYEHIALDKSE 161

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             +DW A  L+++Q QYA+ DV +L  L  +   + Q  G  D     C  + +R
Sbjct: 162 SRTDWLARPLTEKQCQYASGDVFYLLPLAKKLIAQAQEAGYMDAIVDECEMIAER 216


>gi|89075742|ref|ZP_01162130.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
 gi|89048474|gb|EAR54049.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
          Length = 363

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 7/177 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73
           +AR   A+ +DTE +       RL ++QL  G+    +D I +    ++   L  +L D+
Sbjct: 6   SARAHSAVMLDTEFVRTRTLYPRLGLIQLFDGEQLSLIDPIEV----EDMEPLWALLRDQ 61

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              K+ H    D+ V  +  G    P+F T++ +     +    G    +KE +G+ + K
Sbjct: 62  SVIKVLHACGEDLEVFQHHAGCLPTPMFDTQLMAAFL-GHGISTGFGALVKEYVGVELDK 120

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +  ++W A  L+ +QL YAA+DV +L  L      K+++ G  +     C  +M R
Sbjct: 121 GEARTNWLARPLTAKQLDYAAADVYYLKPLFETLLAKVEKRGYMEALQQECQSVMQR 177


>gi|323968571|gb|EGB63977.1| ribonuclease D [Escherichia coli M863]
 gi|327252925|gb|EGE64579.1| ribonuclease D [Escherichia coli STEC_7v]
          Length = 371

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 9/178 (5%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73
           A R   AIA+DTE +       +L ++QL  G+    +D + I     +   L  +L D 
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLVIT----DWSPLKAILRDP 69

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINIS 132
              K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + 
Sbjct: 70  SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLD 127

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 128 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|270262203|ref|ZP_06190475.1| hypothetical protein SOD_b04110 [Serratia odorifera 4Rx13]
 gi|270044079|gb|EFA17171.1| hypothetical protein SOD_b04110 [Serratia odorifera 4Rx13]
          Length = 373

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 7/176 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    IA+DTE +       +L ++QL  G+    +D + I   Q      + +L D +
Sbjct: 19  ARNHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQWQP----FIDLLSDTQ 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K  H G  D+ V    F     P+  T+I +  T    +  G    + E + +++ K+
Sbjct: 75  IVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFTGRPLS-CGFATLVTEYMQVDLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L+++Q  YAA+DV +L  +  Q  ++ +  G +  A + C  L  R
Sbjct: 134 ESRTDWLARPLTEKQCVYAAADVFYLLPMAQQLVQETEDAGWTAAAANECLLLCQR 189


>gi|145640347|ref|ZP_01795931.1| ribonuclease D [Haemophilus influenzae R3021]
 gi|145274933|gb|EDK14795.1| ribonuclease D [Haemophilus influenzae 22.4-21]
          Length = 380

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  + +L + K  
Sbjct: 27  AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FIALLANPKVL 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    RP+  T+I +R         GL    ++ L + I K   
Sbjct: 85  KILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNVEIDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170


>gi|238782530|ref|ZP_04626561.1| Ribonuclease D [Yersinia bercovieri ATCC 43970]
 gi|238716457|gb|EEQ08438.1| Ribonuclease D [Yersinia bercovieri ATCC 43970]
          Length = 395

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR    +A+DTE +       +L ++QL  G+    +D + I   Q        +L D  
Sbjct: 41  ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITEWQP----FRELLQDLA 96

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK 133
             K  H G  D+ V    F     P+  T++ +  + R+ +   G    + E  G+ + K
Sbjct: 97  VVKYLHAGSEDLEVFLNAFDRMPTPMIDTQVLAAFSGRSLSC--GFAMLVNEFEGVELDK 154

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 155 SESRTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECQLLCRR 211


>gi|258626516|ref|ZP_05721356.1| ribonuclease D [Vibrio mimicus VM603]
 gi|258581227|gb|EEW06136.1| ribonuclease D [Vibrio mimicus VM603]
          Length = 385

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 22  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVIDEMTP-FV 79

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 80  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 138

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++   G
Sbjct: 139 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAG 186


>gi|262171029|ref|ZP_06038707.1| ribonuclease D [Vibrio mimicus MB-451]
 gi|261892105|gb|EEY38091.1| ribonuclease D [Vibrio mimicus MB-451]
          Length = 381

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           GD+   C AAR  D + +DTE +       +L ++Q+  G+  + +I      +  P  V
Sbjct: 18  GDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGEN-LSLIDPTVIDEMTP-FV 75

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++ L
Sbjct: 76  ELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQL 134

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++   G
Sbjct: 135 QVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAG 182


>gi|323166513|gb|EFZ52276.1| ribonuclease D [Shigella sonnei 53G]
          Length = 371

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRVFPAIAQDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|213586553|ref|ZP_03368379.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 165

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 14  AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG    P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--WGFASMVEEYTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHL 160
           +  +DW A  LS+ Q +YAA+DV +L
Sbjct: 130 ESRTDWLARPLSERQCEYAAADVWYL 155


>gi|74311884|ref|YP_310303.1| ribonuclease D [Shigella sonnei Ss046]
 gi|73855361|gb|AAZ88068.1| RNase D [Shigella sonnei Ss046]
          Length = 375

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 18  AVRVFPAIAQDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 76  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189


>gi|283832800|ref|ZP_06352541.1| ribonuclease D [Citrobacter youngae ATCC 29220]
 gi|291072487|gb|EFE10596.1| ribonuclease D [Citrobacter youngae ATCC 29220]
          Length = 371

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL   DG    +    G  +   L  +L D   
Sbjct: 14  AVREFPAIALDTEFVRTRTYYPQLGLIQLF--DGKHVALIDPQGITDWSPLRAILRDTAI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFCGRPLS--WGFAAMVEEFTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +      + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITTTLMAETEASGWLPAALDECRLMQQR 185


>gi|251789601|ref|YP_003004322.1| ribonuclease D [Dickeya zeae Ech1591]
 gi|247538222|gb|ACT06843.1| ribonuclease D [Dickeya zeae Ech1591]
          Length = 373

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   EG + A CA A  V  +A+DTE +       +L ++QL  GD  + +I   A +  
Sbjct: 6   ITTDEG-LSAVCAQACAVSEVALDTEFVRTRTYYPQLGLIQLYDGD-NLSLIDPLAIRDW 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKD 121
           AP    +L + +  K  H G  D+ V    FG    P   ++I A+ L +  +  +G   
Sbjct: 64  AP-FRALLQNPQITKFLHAGSEDLEVFLNAFGCLPSPFIDSQILAAFLGKPLS--YGFAA 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            + +   + + K++  +DW A  LS++Q QYAA+DV +L  +      + +  G  D A 
Sbjct: 121 LVADYRQVALDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARTLVAETRAAGWLDAAL 180

Query: 182 SCCNFLMDR 190
             C  L  R
Sbjct: 181 DECRLLCQR 189


>gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 576

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 23/165 (13%)

Query: 20  VDAIAVDTETLGLMPR------RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           V  + +DTET G   R       +R+ ++ L      VD+++    +K    +VG     
Sbjct: 22  VPYLFIDTETTGDRIRLFQVGDEERIFVIDLFDLPEAVDVLKELIAKKG---VVG----- 73

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
                 H  +FD+  + Y  G+     F T I S L      +H L    + LLG  + K
Sbjct: 74  ------HNLKFDLKFM-YPLGIVPYATFDTMIGSFLLGY--ERHSLSHVAERLLGYTMDK 124

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           + Q SDWS   L+ +Q++YAA+DV+ +  L  +  EKL  LG +D
Sbjct: 125 SLQLSDWSRTALTKQQIEYAATDVLVVRELFYKMREKLNALGETD 169


>gi|218548642|ref|YP_002382433.1| ribonuclease D [Escherichia fergusonii ATCC 35469]
 gi|218356183|emb|CAQ88800.1| ribonuclease D [Escherichia fergusonii ATCC 35469]
 gi|324113537|gb|EGC07512.1| ribonuclease D [Escherichia fergusonii B253]
          Length = 375

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73
           A R   AIA+DTE +       +L ++QL  G+    +D + I    ++   L  +L D 
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLTI----RDWSPLKSVLRDP 73

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINIS 132
              K  H G  D+ V    FG   +P+  T++ A+   R  +   G    ++E  G+ + 
Sbjct: 74  AITKFLHAGSEDLEVFLNKFGEMPQPLIDTQVLAAFCGRPMS--WGFASMVEEYSGVILD 131

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMAETEASGWLPAALDECRLMQMR 189


>gi|325497053|gb|EGC94912.1| ribonuclease D [Escherichia fergusonii ECD227]
          Length = 375

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73
           A R   AIA+DTE +       +L ++QL  G+    +D + I    ++   L  +L D 
Sbjct: 18  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLTI----RDWSPLKSVLRDP 73

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINIS 132
              K  H G  D+ V    FG   +P+  T++ A+   R  +   G    ++E  G+ + 
Sbjct: 74  AITKFLHAGSEDLEVFLNKFGEMPQPLIDTQVLAAFCGRPMS--WGFASMVEEYSGVILD 131

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMAETEASGWLPAALDECRLMQMR 189


>gi|304396155|ref|ZP_07378037.1| ribonuclease D [Pantoea sp. aB]
 gi|304356524|gb|EFM20889.1| ribonuclease D [Pantoea sp. aB]
          Length = 373

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 7/176 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEK 74
           AR   A+A+DTE +       +L ++QL      V  D + I    ++    + +L D +
Sbjct: 19  ARQQAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPLNI----RDWSPFIALLTDTR 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K  H G  D+ V  + FGV   P+  T+I +  +    +  G    +     + + K+
Sbjct: 75  VTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLS-WGFASMVAHFTQVELDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L+  Q +YAA+DV +L  +  Q     +  G    A S C+ L  R
Sbjct: 134 ESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGNMAAALSECDNLCQR 189


>gi|325578461|ref|ZP_08148596.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
 gi|325160197|gb|EGC72326.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
          Length = 383

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR   A+A+DTE + +     +L ++QL  G+  V +I   +    +P  V +L D++  
Sbjct: 27  ARQQSAVALDTEFMRISTYYPKLGLIQLYDGE-RVSLIDPLSITDFSP-FVELLRDQQVT 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F    + +  T+I +R    + N  GL   +   LGI + K   
Sbjct: 85  KILHACNEDLLVFLQEFDALPQLMMDTQIMARFL-GFANSAGLAKLVLHYLGIEMDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            ++W    LS  QLQYAA DV +L
Sbjct: 144 RTNWLKRPLSPVQLQYAAGDVWYL 167


>gi|333018685|gb|EGK37978.1| ribonuclease D [Shigella flexneri K-227]
          Length = 371

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G+    I  +  G  +   L  +L D   
Sbjct: 14  AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YA +DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAVADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 185


>gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 406

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE+ G      ++C++Q++       +D ++I     N   L  +  D    KIFH
Sbjct: 29  MSIDTESSGYYTYYPKVCLIQINSNGKNYLIDPLKIT----NLSALGPLFEDPNILKIFH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             + DI  L   FG +      T I+SRL     +       ++    + +SK +Q S+W
Sbjct: 85  SAQDDIKALKRDFGFKFVNTADTMISSRLLSLEQSSLSFV--VEHYHKVTLSKVEQKSNW 142

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
               L  +QL+YAA D  +L ++ L+  E L+R    D A S  +F+
Sbjct: 143 EIRPLQKQQLKYAALDTAYLESIWLKMEEDLKRRSLYDEAKSEFDFI 189


>gi|268589713|ref|ZP_06123934.1| ribonuclease D [Providencia rettgeri DSM 1131]
 gi|291314943|gb|EFE55396.1| ribonuclease D [Providencia rettgeri DSM 1131]
          Length = 373

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 3/168 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +       +L ++QL  G   V +I        +P    +L + ++ K  H G
Sbjct: 25  LALDTEFVRTRTYYPQLGLLQLYDGK-QVSLIDPLLMTDFSP-FKALLTNPEQLKFLHAG 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V  + F     P+  T++ +     Y    G    + E LGI + K++  +DW A
Sbjct: 83  SEDLEVFMHDFDCVPEPMIDTQVVAAFL-GYPISCGFASLVAEHLGIELDKSESRTDWLA 141

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             LS++Q  YAA+DV++L  L     EK+   G  + A   C  ++ R
Sbjct: 142 RPLSEKQCDYAAADVLYLLPLAEILMEKVTEAGYLEDAKDECQRVVAR 189


>gi|115896423|ref|XP_795972.2| PREDICTED: similar to G protein-coupled receptor
           [Strongylocentrotus purpuratus]
 gi|115925241|ref|XP_001183731.1| PREDICTED: similar to G protein-coupled receptor
           [Strongylocentrotus purpuratus]
          Length = 976

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 20/189 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVDEKREKI 78
            I +D E + L   + RL +VQ+S  DG     D  +     K   +L   L  +   K+
Sbjct: 734 VIGLDCEGVELGREKGRLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKTLEHDSILKV 793

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIA-----SRLTRTYTNQHGLKDNLKELLGINIS- 132
            H    D   L++ FGV+++ VF T IA      +L R +  Q G K  L ELLG   S 
Sbjct: 794 IHACNSDTYSLYHDFGVKLKNVFDTSIAMFTIMEQLNRNHPYQIGYK-ALCELLGEAASH 852

Query: 133 -------KAQQSSD-WSADDLSDEQLQYAASDVVHL-HALRLQFTEKLQRLGRSDLATSC 183
                  K  ++ D W    L++E + YAASD + L   + L+    L R+ R DL T  
Sbjct: 853 KDDDFKKKMIETEDFWKIRPLTEEMIYYAASDTLCLVPTVYLKLNGMLTRVWR-DLFTWS 911

Query: 184 CNFLMDRAE 192
           C   M+R +
Sbjct: 912 CKNAMERKQ 920


>gi|90580077|ref|ZP_01235885.1| hypothetical ribonuclease D [Vibrio angustum S14]
 gi|90438962|gb|EAS64145.1| hypothetical ribonuclease D [Vibrio angustum S14]
          Length = 375

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 7/177 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73
           +AR   A+ +DTE +       RL ++QL  G+    +D + +    ++   L  +L D+
Sbjct: 18  SARTHTAVMLDTEFVRTRTLYPRLGLIQLFDGEQLSLIDPLEV----EDMEPLWALLRDQ 73

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              K+ H    D+ V  +  G    P+F T++ +     +    G    +KE +G+ + K
Sbjct: 74  SVIKVLHACGEDLEVFQHHAGCLPTPMFDTQLMAAFL-GHGISTGFGTLVKEYVGVELDK 132

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +  ++W A  L+++QL YAA+DV +L  L      K++  G  +     C  +M R
Sbjct: 133 GEARTNWLARPLTEKQLDYAAADVYYLKPLFESLLAKVEERGYMEALQQECESVMHR 189


>gi|237731840|ref|ZP_04562321.1| ribonuclease D [Citrobacter sp. 30_2]
 gi|226907379|gb|EEH93297.1| ribonuclease D [Citrobacter sp. 30_2]
          Length = 371

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 5/176 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL   DG    +    G  +   L  +L D   
Sbjct: 14  AVREFPAIALDTEFVRTRTYYPQLGLIQLF--DGKHVALIDPQGITDWSPLRDILRDTAI 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K  H G  D+ V    FG   +P+  T+I A+   R  +   G    ++E  G+ + K+
Sbjct: 72  TKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFCGRPMS--WGFAAMVEEFTGVALDKS 129

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C  +  R
Sbjct: 130 ESRTDWLARPLTERQCEYAAADVWYLLPITTKLMVETEASGWLPAALDECRLMQQR 185


>gi|145638698|ref|ZP_01794307.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
 gi|145272293|gb|EDK12201.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
 gi|309750190|gb|ADO80174.1| Ribonuclease D [Haemophilus influenzae R2866]
          Length = 380

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  + +L + K  
Sbjct: 27  AQQQSAVALDTEFMRVSTYFPKLGLIQLYDGEH-VSLIDPLAITDFSP-FIALLANPKVL 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V    F    RP+  T+I +R     T+  GL    ++ L + I K   
Sbjct: 85  KVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSA-GLAKLAQQYLNVEIDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LS+ QLQYAA DV +L  L
Sbjct: 144 RTNWIKRPLSNIQLQYAAGDVWYLLPL 170


>gi|239992935|ref|ZP_04713459.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
          Length = 385

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 3/176 (1%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            AA+  +A+A+DTE +        L ++QL  G   V I  +A    N    + ++ + +
Sbjct: 17  TAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAID--NMQPFIDLMENTE 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+ H    DI      F     PVF T++A  +     +  G    ++ L  I++ K 
Sbjct: 75  VVKVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDMGPS-LGYAKLVELLCDISLDKG 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L + QL YAA+DV++L     Q   K+Q  G+          L+D+
Sbjct: 134 ESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEAGKVHWIYQEIALLVDK 189


>gi|118590153|ref|ZP_01547556.1| probable ribonuclease d protein [Stappia aggregata IAM 12614]
 gi|118437125|gb|EAV43763.1| probable ribonuclease d protein [Stappia aggregata IAM 12614]
          Length = 394

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + VDTE L       +LC++Q++  D    +  ++ G    P    ++ D    K+FH
Sbjct: 21  DYVTVDTEFLRETTFWPKLCVIQMAGPDMAFIVDALSEGLDLEP-FFELMRDGSVTKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI ++++   +   P+F T++A+ +   + +       + ++ G  I K+ + +DW
Sbjct: 80  AARQDIEIIYHLGELIPAPLFDTQVAAMVC-GFGDSISYDQLVYKVTGARIDKSSRFTDW 138

Query: 141 SADDLSDEQLQYAASDVVHL 160
           +   L+ +QL YA +DV HL
Sbjct: 139 ARRPLTAKQLDYALADVTHL 158


>gi|303253729|ref|ZP_07339866.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247590|ref|ZP_07529633.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302647454|gb|EFL77673.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855860|gb|EFM88020.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 371

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 3/171 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A+A+DTE +       +L ++QL  GD TV +I        +P  +G+L  +   K+ H 
Sbjct: 28  AVALDTEFIRTRSYYPKLGLIQLFDGD-TVSLIDPNPISDFSP-FIGLLTCQNVVKVLHA 85

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+ V  + F     P+  T+I +       +  G    +   L + + K    +DW 
Sbjct: 86  CSEDLEVFQHLFKQLPTPLADTQIMAGFAGVGISL-GFAKLVAHYLNVELDKGASRTDWL 144

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           A  L++EQLQYAA+DV +L  +  +    L      +     C +L+++ E
Sbjct: 145 ARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQNAVEQECQYLLNKRE 195


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 4/144 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVDTET GL P   +L ++QL+  D  V +I   +       L+  ++     KIF   
Sbjct: 25  IAVDTETTGLDPHTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAILSTSGIKIFQNA 84

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKAQQSSDW 140
           +FD+  L     +    +F T +AS+L R      Q  LK   +  L  ++ K +Q+S+W
Sbjct: 85  KFDLQFLM-ALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLNEDLDKEEQTSNW 143

Query: 141 SADDLSDEQLQYAASDVVHLHALR 164
              +L++ Q+ YAA D   L  LR
Sbjct: 144 QG-ELTESQILYAARDAEILLRLR 166


>gi|260598272|ref|YP_003210843.1| ribonuclease D [Cronobacter turicensis z3032]
 gi|260217449|emb|CBA31565.1| Ribonuclease D [Cronobacter turicensis z3032]
          Length = 409

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR   A+A+DTE +       +L ++QL  G+  V +I      + AP    +L D+   
Sbjct: 55  ARTQRALALDTEFVRTRTYYPQLGLIQLYDGE-NVALIDPLTITEWAP-FQALLQDQNIT 112

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    FG+   P   T++ +     +    G    ++   G+ + K++ 
Sbjct: 113 KFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFV-GHPLSCGFATLVEHHTGVALDKSES 171

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  L++ Q  YAA+DV +L  +  +  E+++  G    A + C  +  R
Sbjct: 172 RTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAINECRLMTQR 225


>gi|260776343|ref|ZP_05885238.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607566|gb|EEX33831.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
          Length = 371

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 12/178 (6%)

Query: 15  CA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           CA AR  D + +DTE +       +L ++QL  G+    I         A   V +L D 
Sbjct: 16  CAQARNADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPTVIDDMTA--FVHLLKDT 73

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGI 129
              K+ H    D+ V   +FG    P+  T++ +         HGL      L    LG+
Sbjct: 74  SVLKVLHACGEDLEVFNNSFGCLPYPMVDTQLMAAFL-----GHGLSTGFASLVESYLGV 128

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            + K++  +DW A  L+D+QL YAA+DV +L  L  +  E++ + G  + A    + L
Sbjct: 129 ELDKSESRTDWLARPLTDKQLDYAAADVHYLLPLYEKLLEEITQAGWWEAAQQESDLL 186


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 4/144 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVDTET GL P   +L ++QL+  D  V +I   +       L+  ++     K+F   
Sbjct: 30  IAVDTETTGLDPHTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAILSTSGVKVFQNA 89

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKAQQSSDW 140
           +FD+  L     +    +F T +AS+L R      Q  LK   +  L  ++ K +Q+S+W
Sbjct: 90  KFDLQFLM-ALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLNEDLDKEEQTSNW 148

Query: 141 SADDLSDEQLQYAASDVVHLHALR 164
              +L++ Q+ YAA D   L  LR
Sbjct: 149 QG-ELTESQILYAARDAEILLRLR 171


>gi|156973677|ref|YP_001444584.1| ribonuclease D [Vibrio harveyi ATCC BAA-1116]
 gi|156525271|gb|ABU70357.1| hypothetical protein VIBHAR_01380 [Vibrio harveyi ATCC BAA-1116]
          Length = 382

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66
           D+   CA AR  D + +DTE + +     +L ++QL  G     +D   +     +  + 
Sbjct: 21  DLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDPTELT----DMTSF 76

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122
           V +L D    K+ H    D+ V    FG    P+  T++ +         HGL       
Sbjct: 77  VELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 131

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 132 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAGWWEAVQQ 191

Query: 183 CCNFLMDR 190
             + L+ +
Sbjct: 192 ESDLLVSK 199


>gi|308187080|ref|YP_003931211.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1]
 gi|308057590|gb|ADO09762.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1]
          Length = 373

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 7/176 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEK 74
           AR   A+A+DTE +       +L ++QL      V  D + I    ++    + +L D  
Sbjct: 19  ARQHAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPLNI----RDWSPFIALLTDTS 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K  H G  D+ V  + FGV   P+  T+I +  +    +  G    +     + + K+
Sbjct: 75  VTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFSGQPLSW-GFASMVAHFTQVELDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  L+  Q +YAA+DV +L  +  Q     +  G    A S C+ L  R
Sbjct: 134 ESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGNMAAALSECDNLCQR 189


>gi|104783019|ref|YP_609517.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
 gi|95112006|emb|CAK16733.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
          Length = 377

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 17/153 (11%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDE 73
           R +  +A+DTE + +     +  +VQ+  GDG     +D + I+  Q     L  +L D 
Sbjct: 22  RKLPFVALDTEFMRVDTFYPKAGLVQI--GDGNQAFLIDPLLISDWQP----LADLLDDS 75

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130
              K+ H    D+ VL    G   +P+F T++A+     Y N     G    ++E+LG+ 
Sbjct: 76  GVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAA----GYLNIGFSMGYSRLVQEVLGLE 131

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           + K +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 132 LPKGETRSDWLQRPLSETQVSYAAEDAVHLAEL 164


>gi|163803649|ref|ZP_02197513.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
 gi|159172559|gb|EDP57420.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
          Length = 372

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 16/188 (8%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66
           D+   CA AR  D + +DTE + +     +L ++QL  G     +D   +     +  + 
Sbjct: 11  DLEEVCALAREADVVMLDTEFVRIRTFYPQLGLIQLFDGKQLSLIDPTELT----DMTSF 66

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122
           V +L D    K+ H    D+ V    FG    P+  T++ +         HGL       
Sbjct: 67  VELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+ + G  +    
Sbjct: 122 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNQAGWWEAVQQ 181

Query: 183 CCNFLMDR 190
             + L+ +
Sbjct: 182 ESDLLVSK 189


>gi|269960729|ref|ZP_06175101.1| ribonuclease D [Vibrio harveyi 1DA3]
 gi|269834806|gb|EEZ88893.1| ribonuclease D [Vibrio harveyi 1DA3]
          Length = 372

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66
           D+   CA AR  D + +DTE + +     +L ++QL  G     +D   +     +  + 
Sbjct: 11  DLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDPTELT----DMTSF 66

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122
           V +L D    K+ H    D+ V    FG    P+  T++ +         HGL       
Sbjct: 67  VELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 122 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAGWWEAVQQ 181

Query: 183 CCNFLMDR 190
             + L+ +
Sbjct: 182 ESDLLVSK 189


>gi|226329911|ref|ZP_03805429.1| hypothetical protein PROPEN_03824 [Proteus penneri ATCC 35198]
 gi|225200706|gb|EEG83060.1| hypothetical protein PROPEN_03824 [Proteus penneri ATCC 35198]
          Length = 372

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AA     IA+DTE + +      L ++Q+  G     I  +A   K+    V +L ++  
Sbjct: 18  AASEASQIALDTEFVRIRTYYPHLGLIQMYDGKQISLIDPLAI--KDWTPFVELLTNQGI 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K  H G  D+ V  + FG    P+  T++ +     +    G    +++   + + K++
Sbjct: 76  MKFLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GHPISCGFATLVEKYENVALDKSE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             +DW A  L+++Q QYA+ DV +L  L  +  ++ +  G  D     C  + +R
Sbjct: 135 SRTDWLARPLTEKQCQYASGDVFYLLPLAEKLIKEAEEAGYMDAIADECEMIAER 189


>gi|114775667|ref|ZP_01451235.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
 gi|114553778|gb|EAU56159.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
          Length = 398

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH  R DI ++F   G    P+F T++A+ L   Y  Q G  + ++ +    + K + 
Sbjct: 80  KVFHAARQDIEIIFNEAGGLPLPLFDTQVAAALL-GYGQQVGFGNLVQRITKKLLPKGES 138

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            +DW A  L+ +Q+ YAA DV+ L  +     E+L+   R+
Sbjct: 139 FTDWKARPLTKKQMAYAADDVIWLMPVFQHLKERLEAAKRT 179


>gi|145632638|ref|ZP_01788372.1| ribonuclease D [Haemophilus influenzae 3655]
 gi|144986833|gb|EDJ93385.1| ribonuclease D [Haemophilus influenzae 3655]
 gi|309972450|gb|ADO95651.1| Ribonuclease D [Haemophilus influenzae R2846]
          Length = 380

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+  V +I   A    +P  + +L + K  
Sbjct: 27  AQQKSAVALDTEFMRVSTYFPKLGLIQLYDGE-RVSLIDPLAITDFSP-FIALLANPKVL 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ V    F     P+  T+I +R      +  GL    ++ L I I K   
Sbjct: 85  KILHSCSEDLLVFLQEFDQLPHPMIDTQIMARFIGLGASA-GLAKLAQQYLNIEIDKGAT 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHAL 163
            ++W    LSD QLQYAA DV +L  L
Sbjct: 144 RTNWIKRPLSDIQLQYAAGDVWYLLPL 170


>gi|119487547|ref|ZP_01621157.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
 gi|119455716|gb|EAW36852.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
          Length = 309

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 15/151 (9%)

Query: 62  NAPNLVGMLVDE-----KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--- 113
           + P L  + ++E       EK+FH   +D+ +L      + + V CT + ++    Y   
Sbjct: 62  DQPELTTLFIEEIMANPAIEKVFHNANYDLKLLG---KKQSKNVTCTLVMAKKIPYYLLP 118

Query: 114 TNQHGLKDNLKELLG--INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              + LK  L   LG   NI K +QSSDW    L+++QL+YA  DVV+L  +  Q   KL
Sbjct: 119 VPNYQLK-TLATQLGDFTNIDKQEQSSDWGQRPLTEKQLEYAQMDVVYLAQIH-QCLLKL 176

Query: 172 QRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           Q L   D  T   N L  R +     W+ +D
Sbjct: 177 QPLASPDPTTEDLNKLATRYQEIAHDWKQLD 207


>gi|330504002|ref|YP_004380871.1| ribonuclease D [Pseudomonas mendocina NK-01]
 gi|328918288|gb|AEB59119.1| ribonuclease D [Pseudomonas mendocina NK-01]
          Length = 377

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 24/157 (15%)

Query: 15  CAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIA-----AGQKNAPNL 66
           CAA + +  +A+DTE + +        ++Q+S GDG   +D +RI+     A    APN+
Sbjct: 18  CAAWQALPFVALDTEFMRVDTFYPIAGLLQVSGGDGAYLIDPLRISDWRPFAALLEAPNV 77

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNL 123
           V         K+ H    D+ V     G    P+F T++A+     Y N     G    +
Sbjct: 78  V---------KVLHSCSEDLEVFLRLSGSLPAPLFDTQLAA----GYLNLGFSMGYSRLV 124

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           + LL I + K +  SDW    LS+ Q++YAA DV+HL
Sbjct: 125 QALLDIELPKGETRSDWLQRPLSELQVRYAAEDVLHL 161


>gi|304389402|ref|ZP_07371365.1| ribonuclease D [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327212|gb|EFL94447.1| ribonuclease D [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 406

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LV 71
           E  A     +A+DTE  G         +VQL   G GT  I  IA      P+L  +   
Sbjct: 32  ELVADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAF-----PDLEPLSRA 86

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             K E I H    D+  L    G+R + +F T++A++L        GL   L+++LGI++
Sbjct: 87  IGKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNF--QGFGLAAVLEQVLGISL 143

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +K   ++DWS   L  +   YAA DV +L  LR     +LQ   + D A    +FL+D
Sbjct: 144 AKEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201


>gi|32035264|ref|ZP_00135282.1| COG0349: Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208098|ref|YP_001053323.1| ribonuclease D [Actinobacillus pleuropneumoniae L20]
 gi|190149931|ref|YP_001968456.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|307249819|ref|ZP_07531795.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307261076|ref|ZP_07542755.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307263258|ref|ZP_07544876.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|126096890|gb|ABN73718.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|189915062|gb|ACE61314.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306858121|gb|EFM90201.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306869208|gb|EFN01006.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306871320|gb|EFN03046.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 371

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 3/171 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A+A+DTE +       +L ++QL  GD TV +I   +    +P  +G+L  +   K+ H 
Sbjct: 28  AVALDTEFIRTRSYYPKLGLIQLFDGD-TVSLIDPNSISDFSP-FIGLLTCQNVVKVLHA 85

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+ V  + F     P+  T+I +       +  G    +   L + + K    +DW 
Sbjct: 86  CSEDLEVFQHLFKQLPTPLADTQIMAGFAGGGISL-GFAKLVAHYLNVELDKGASRTDWL 144

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           A  L++EQLQYAA+DV +L  +  +    L      +     C +L+ + E
Sbjct: 145 ARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQNAVEQECRYLLSKRE 195


>gi|127513115|ref|YP_001094312.1| ribonuclease D [Shewanella loihica PV-4]
 gi|126638410|gb|ABO24053.1| ribonuclease D [Shewanella loihica PV-4]
          Length = 368

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 21/168 (12%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------PNLVGML 70
           R    + +DTE +       +L ++Q+  G+    I  +A    +A        +++ +L
Sbjct: 20  RQAKVLMLDTEFVRTRTYYAKLGLIQVYDGETLALIDPVAVSDLSAFWALLERDDMISVL 79

Query: 71  --VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
               E  E +  YGR    VLF +   ++   FC          + +  G    ++  LG
Sbjct: 80  HSCSEDLEVLARYGRCQPKVLFDS---QIAAAFCG---------WGHGMGYAKLVEHCLG 127

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           + + K +  +DW    LSD QLQYAA+DV +L+ L  Q  EKLQ  GR
Sbjct: 128 VQLDKGESRTDWMKRPLSDAQLQYAANDVDYLYRLYPQLLEKLQESGR 175


>gi|78485923|ref|YP_391848.1| 3'-5' exonuclease [Thiomicrospira crunogena XCL-2]
 gi|78364209|gb|ABB42174.1| ribonuclease D [Thiomicrospira crunogena XCL-2]
          Length = 385

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 7/167 (4%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            + D+ A C   +    IA+DTE +        L ++Q+   DG   II   A + +   
Sbjct: 8   QQADLDAFCELLKTCPWIALDTEFVRTDTYFSILSLIQIQTHDGQAAIIDPLAIE-DLTA 66

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  ++ +    K+FH  R DI VL+   G     ++ T+IA  L   + +  GL   +K 
Sbjct: 67  LWSIISNPNVRKVFHSARQDIEVLYQVSGQMPISIYDTQIAC-LFLQHGDLAGLARVVKA 125

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            L   + K Q  ++W    L+D+QL+YA +DV +L  L     EKLQ
Sbjct: 126 ELNFTLEKDQTRTNWQQRPLTDKQLEYAINDVRYLAPLY----EKLQ 168


>gi|170723061|ref|YP_001750749.1| ribonuclease D [Pseudomonas putida W619]
 gi|169761064|gb|ACA74380.1| ribonuclease D [Pseudomonas putida W619]
          Length = 377

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 17/153 (11%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDE 73
           R +  +A+DTE + +     +  ++Q+  GDG     +D + I   Q     L  +L D 
Sbjct: 22  RTLPFVALDTEFMRVDTFYPKAGLIQI--GDGERAYLIDPLLIVDWQP----LGELLEDA 75

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130
              K+ H    D+ VL    G   +P+F T++A+     Y N     G    ++E+LG+ 
Sbjct: 76  GVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAA----GYLNLGFSMGYSRLVQEVLGLE 131

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           + K +  SDW    LSD Q+ YAA D VHL  L
Sbjct: 132 LPKGETRSDWLQRPLSDTQVSYAAEDAVHLAEL 164


>gi|298346894|ref|YP_003719581.1| ribonuclease D [Mobiluncus curtisii ATCC 43063]
 gi|298236955|gb|ADI68087.1| ribonuclease D [Mobiluncus curtisii ATCC 43063]
          Length = 406

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LV 71
           E  A     +A+DTE  G         +VQL   G GT  I  IA      P+L  +   
Sbjct: 32  ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAF-----PDLEPLSRA 86

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             K E I H    D+  L    G+R + +F T++A++L        GL   L+++LGI++
Sbjct: 87  IGKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNF--QGFGLAAVLEQVLGISL 143

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +K   ++DWS   L  +   YAA DV +L  LR     +LQ   + D A    +FL+D
Sbjct: 144 AKEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201


>gi|300723126|ref|YP_003712424.1| RNase D, processes tRNA [Xenorhabdus nematophila ATCC 19061]
 gi|297629641|emb|CBJ90244.1| RNase D, processes tRNA precursor [Xenorhabdus nematophila ATCC
           19061]
          Length = 379

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 7/170 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IA+DTE +       +L ++QL  G+    +D + I+  Q     L  +LVD    K+ H
Sbjct: 28  IALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLEISQWQP----LKALLVDPDVLKLIH 83

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
            G  D+ V   +F     P+  T++ +     +    G    + E L + + K++  +DW
Sbjct: 84  AGSEDLEVFGNSFQCLPTPMIDTQVLAAFI-GHPISCGFATLVAEYLHVELDKSESRTDW 142

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            A  LS +Q +YAA+DV +L  L     +K ++ G  D A    + +  R
Sbjct: 143 LARPLSRKQCEYAAADVYYLLPLADILLKKTEQAGYFDAAKDESDLIAQR 192


>gi|221134772|ref|ZP_03561075.1| ribonuclease D [Glaciecola sp. HTCC2999]
          Length = 382

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 5/151 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHY 81
           IAVDTE +        + +VQ+  G   VDI  I      +   L  ++ + +  K+ H 
Sbjct: 27  IAVDTEFVRTRTFYPHIGLVQIYDG---VDIALIDPIAIDDLSPLSQLMTNPQVIKVLHA 83

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+    +  GV   P+F T++A++L     N  G    ++ L  I + K +  +DW 
Sbjct: 84  CSEDLETFEFALGVMPEPLFDTQVAAQLA-GLGNSVGYGRLVELLQDITLEKGESRTDWI 142

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
              LS EQL YAA DV++L     +  EKL+
Sbjct: 143 RRPLSPEQLIYAAEDVLYLLPCYFKLAEKLE 173


>gi|315656649|ref|ZP_07909536.1| ribonuclease D [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492604|gb|EFU82208.1| ribonuclease D [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 406

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LV 71
           E  A     +A+DTE  G         +VQL   G GT  I  IA      P+L  +   
Sbjct: 32  ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAF-----PDLEPLSRA 86

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             K E I H    D+  L    G+R + +F T++A++L        GL   L+++LGI++
Sbjct: 87  IGKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNF--QGFGLAAVLEQVLGISL 143

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +K   ++DWS   L  +   YAA DV +L  LR     +LQ   + D A    +FL+D
Sbjct: 144 AKEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201


>gi|315655438|ref|ZP_07908338.1| ribonuclease D [Mobiluncus curtisii ATCC 51333]
 gi|315490378|gb|EFU80003.1| ribonuclease D [Mobiluncus curtisii ATCC 51333]
          Length = 406

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LV 71
           E  A     +A+DTE  G         +VQL   G GT  I  IA      P+L  +   
Sbjct: 32  ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAF-----PDLEPLSRA 86

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             K E I H    D+  L    G+R + +F T++A++L        GL   L+++LGI++
Sbjct: 87  IGKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNF--QGFGLAAVLEQVLGISL 143

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +K   ++DWS   L  +   YAA DV +L  LR     +LQ   + D A    +FL+D
Sbjct: 144 AKEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201


>gi|37679238|ref|NP_933847.1| ribonuclease D [Vibrio vulnificus YJ016]
 gi|37197981|dbj|BAC93818.1| ribonuclease D [Vibrio vulnificus YJ016]
          Length = 390

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 12/171 (7%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+   C+ AR  D + +DTE +       +L ++QL  GD    I        +A     
Sbjct: 30  DLARVCSKAREADVVMLDTEFVRTRTYYPQLGLIQLFDGDSLSLIDPTVLTDMSA--FTE 87

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL-- 126
           +L D    K+ H    D+ V    FG    P+  T+I +         HGL      L  
Sbjct: 88  LLNDASVMKVLHACGEDLEVFHNAFGAMPVPMVDTQIMAAFL-----GHGLSTGFAALVE 142

Query: 127 --LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L + + K++  +DW A  LSD+QL+YAA+DV +L  L     EK+   G
Sbjct: 143 QYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMAAG 193


>gi|307256641|ref|ZP_07538420.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306864689|gb|EFM96593.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 371

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 3/171 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A+A+DTE +       +L ++QL  GD TV +I        +P  +G+L  +   K+ H 
Sbjct: 28  AVALDTEFIRTRSYYPKLGLIQLFDGD-TVSLIDPNPISDFSP-FIGLLTCQNVVKVLHA 85

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+ V  + F     P+  T+I +       +  G    +   L + + K    +DW 
Sbjct: 86  CSEDLEVFQHLFKQLPTPLADTQIMAGFAGGGISL-GFAKLVAHYLNVELDKGASRTDWL 144

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           A  L++EQLQYAA+DV +L  +  +    L      +     C +L+ + E
Sbjct: 145 ARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQNAVEQECRYLLSKRE 195


>gi|90411623|ref|ZP_01219633.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK]
 gi|90327513|gb|EAS43866.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK]
          Length = 374

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    + +DTE +       +L ++Q+  GD  V I  I    ++      +L D+   
Sbjct: 19  ARTYSVVMLDTEFVRTRTLYPKLGLIQMFDGDNLVLIDPIEI--EDLTPFWDLLRDQSVI 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  +  G    P+  T++ +     +    G    + E +G+++ K + 
Sbjct: 77  KVLHACGEDLEVFQHHAGCLPTPMIDTQLMAAFL-GHGVSAGFGSLVSEYVGVDLEKGEA 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            ++W A  L+D+QL YAA+DV +L  L     EK++  G  D     C  LM +
Sbjct: 136 RTNWLARPLTDKQLDYAAADVFYLLPLYETLLEKVKAKGWMDALELECTALMQK 189


>gi|91228923|ref|ZP_01262822.1| ribonuclease D [Vibrio alginolyticus 12G01]
 gi|91187531|gb|EAS73864.1| ribonuclease D [Vibrio alginolyticus 12G01]
          Length = 277

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 11/163 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE + +     +L ++QL  G+  + +I         P  V +L D    
Sbjct: 32  AREADVVMLDTEFVRIRTFYPQLGLIQLFDGN-RLSLIDPTELTDMTP-FVALLKDTSVL 89

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL----KELLGINIS 132
           K+ H    D+ V    FG    P+  T++ +         HGL        +E LG+ + 
Sbjct: 90  KVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFASLVEEYLGVELD 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+ + G
Sbjct: 145 KSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAG 187


>gi|269138811|ref|YP_003295512.1| ribonuclease D [Edwardsiella tarda EIB202]
 gi|267984472|gb|ACY84301.1| ribonuclease D [Edwardsiella tarda EIB202]
 gi|304558803|gb|ADM41467.1| Ribonuclease D [Edwardsiella tarda FL6-60]
          Length = 371

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IA+DTE +       +L +VQL  G+    +D + I+  Q      V +L + +  K+ H
Sbjct: 26  IALDTEFVRTRTYYPQLGLVQLYDGETLSLIDPLPISDWQP----FVDLLRNPQVVKLLH 81

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSSD 139
            G  D+ V  + F    +P+  T+I +  T R  ++  G    +   L +++ K++  +D
Sbjct: 82  AGSEDLEVFLHDFQTLPQPLIDTQILAAFTGRPLSS--GFAAMVSAYLQVDLDKSESRTD 139

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           W A  LS+ Q  YAA+DV +L  +  +   +++  G    A   C  L  R
Sbjct: 140 WLARPLSERQCDYAAADVYYLLPMAHKLLAEVEACGWLPAALDECQALCRR 190


>gi|212711905|ref|ZP_03320033.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM
           30120]
 gi|212685427|gb|EEB44955.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM
           30120]
          Length = 373

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +       +L ++QL  G   V +I        +P    +L +  + K  H G
Sbjct: 25  LALDTEFVRTRTYYPQLGLLQLYDGK-QVSLIDPLLMTDFSP-FKALLTNPNQLKFLHAG 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V  + FG    P+  T++ +     Y    G    + E LGI + K++  +DW A
Sbjct: 83  SEDLEVFMHDFGCVPEPMIDTQVLAAFL-GYPISCGFATLVAEHLGIELDKSESRTDWLA 141

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             LS++Q  YA +DV++L  L     EK+   G
Sbjct: 142 RPLSEKQCDYATADVLYLLPLAKILMEKVSEEG 174


>gi|254821715|ref|ZP_05226716.1| ribonuclease D [Mycobacterium intracellulare ATCC 13950]
          Length = 430

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 5/194 (2%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61
           ++ V+E +  AE   R     AVD E        +R  ++Q+   G GTV I  ++ G+ 
Sbjct: 35  SVSVYEIEAAAERLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGSGTVLIDPVSHGRD 94

Query: 62  NAPNLVGML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
               L  +  V    E I H    D+  L    G+R   ++ T++A RL      +  L 
Sbjct: 95  PLEALRPVAEVLGTDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFERVNLA 151

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++ LLG  ++K   ++DWS   L  E L YAA DV  L  LR    E L   G++D A
Sbjct: 152 TMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIAEVLAGQGKTDWA 211

Query: 181 TSCCNFLMDRAELD 194
               ++L D    D
Sbjct: 212 AQEFDYLRDTGSKD 225


>gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana]
          Length = 578

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDI--IRIAAGQKNAPNLVGMLVDE 73
           R V+  AVD E       +   C++Q+S    D  VD   +RI  G    P L  +  D 
Sbjct: 277 RSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIG----PYLREIFKDP 332

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K++K+ H    DI  L   FG+ V  +F T  ASR+     N   L+  L+   G+  +K
Sbjct: 333 KKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERN--SLEFLLQHFCGVTANK 390

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             Q++DW    L +E  +YA  D  +L  +      +LQR+ + D  T
Sbjct: 391 EYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHT 438


>gi|165976032|ref|YP_001651625.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303249665|ref|ZP_07335870.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307245476|ref|ZP_07527563.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307252170|ref|ZP_07534068.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307254430|ref|ZP_07536267.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258890|ref|ZP_07540621.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|165876133|gb|ABY69181.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302651477|gb|EFL81628.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306853535|gb|EFM85753.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306860314|gb|EFM92329.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306862571|gb|EFM94528.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866914|gb|EFM98771.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 371

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 3/171 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A+A+DTE +       +L ++QL  GD TV +I        +P  +G+L  +   K+ H 
Sbjct: 28  AVALDTEFIRTRSYYPKLGLIQLFDGD-TVSLIDPNPISDFSP-FIGLLTCQNVVKVLHA 85

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+ V  + F     P+  T+I +       +  G    +   L + + K    +DW 
Sbjct: 86  CSEDLEVFQHLFKQLPTPLADTQIMAGFAGGGISL-GFAKLVAHYLNVELDKGASRTDWL 144

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           A  L++EQLQYAA+DV +L  +  +    L      +     C +L+ + E
Sbjct: 145 ARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQNAVEQECRYLLSKRE 195


>gi|262193925|ref|YP_003265134.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
 gi|262077272|gb|ACY13241.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
          Length = 925

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           LC+VQL+  + TV +I   A     P +  +L      KI H  +F+ +V F   G+ + 
Sbjct: 791 LCLVQLAAPEYTV-VIDARAVDDLGP-VSELLASRAVVKIIHNAQFERSV-FRKLGMDIE 847

Query: 99  PVFCT-KIASRL-TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
            VF T K++ RL  R     HGL       LG  + K +Q SDW+   L+  QL YAA D
Sbjct: 848 NVFDTLKVSRRLRGRKREGGHGLGAVCARELGRELDKHEQRSDWTQRPLTQRQLDYAALD 907

Query: 157 VVHLHALRLQFTEKL 171
              L AL  +FT +L
Sbjct: 908 AEVLLALHERFTREL 922


>gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB]
 gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB]
          Length = 339

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I++DTE   +   R++LC+VQ+     T   +       +   L     D +  K+ H G
Sbjct: 78  ISLDTEYDSMHYFREKLCLVQVRASKRTY--VFDPFNGIDLQFLRPYFADPRLLKVTHAG 135

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDW 140
             DI +L   +G   R +F T  A+ +  +      L   +++ LG+ I K +  Q S W
Sbjct: 136 DNDIRILKRDYGFEFRNIFDTHRAAHMLGS--QYLALSSIIEQYLGVEIEKTKKMQRSKW 193

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            A  LS+ QL+YA  D  +L  L     EKL   G  + A
Sbjct: 194 EARPLSEGQLRYAVQDTAYLADLYRHLNEKLSLKGMQERA 233


>gi|119512751|ref|ZP_01631822.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
 gi|119462619|gb|EAW43585.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
          Length = 306

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 18/178 (10%)

Query: 17  ARYVDA--IAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVG---- 68
           A Y +A  + +DTE      R  RL ++Q+   P D + D + +     N P++VG    
Sbjct: 15  AEYTNAKTLWIDTEVADYKSRNPRLSLIQVLDDPTDMSGDRVNLL-DVLNQPDVVGEFIE 73

Query: 69  -MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTN--QHGLKDNLK 124
            ++++ + EK+FH   +D+  L      R + + CT +IA ++         + LK    
Sbjct: 74  QIMINPEIEKVFHNANYDLKFLG---KKRAKNITCTLEIAQKIPYYILPLPNYQLKTLAT 130

Query: 125 ELLGIN-ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            L   N I K +QSSDW    L++ Q++YA  D ++L  + LQ  E LQ     D  T
Sbjct: 131 ALCRFNYIDKQEQSSDWGRRPLTEGQIEYAYLDCIYLAQVHLQLLE-LQVASNPDPKT 187


>gi|119476222|ref|ZP_01616573.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
 gi|119450086|gb|EAW31321.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
          Length = 384

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 15/178 (8%)

Query: 18  RYVDAIAVDTETLGLMPRRDRL----CIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLV 71
           ++   +A+DTE +    R D       ++Q+S G G   +D + I     +   L  +L 
Sbjct: 30  QHAAVLALDTEFI----RTDTFYPIGALLQISEGTGCFLIDPLSI----DDFSPLTALLT 81

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D    K+ H    D+ V    F V  +P+  T+IA+ L   Y    G +   + LL I++
Sbjct: 82  DPAIVKVLHSCSEDLEVFERLFQVLPQPLIDTQIAAGLD-GYGFSLGYQKMTEALLQIHV 140

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +K +  S+W    L++ Q+ YAA DV +L  +  Q  + L+  GR       C+ L +
Sbjct: 141 AKGETRSNWLQRPLTESQIHYAALDVAYLPEMYQQLKQSLESKGRWQWLLDECSPLTN 198


>gi|269103055|ref|ZP_06155752.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162953|gb|EEZ41449.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 382

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 4/187 (2%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           TI     D+   C AA    AI +DTE +       +L ++QL  G   + +I   A + 
Sbjct: 4   TIITTTADLKMVCQAASSAPAIMLDTEFVRTRTLYPKLGLIQLFDGK-QLSLIDPLAIED 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
             P L  +L D+   K+ H    D+ V  +  G    P+  T++ +     +    G   
Sbjct: 63  MEP-LWDLLRDQSVMKVLHACGEDLEVFQHHAGCLPVPMLDTQLMAAFL-GHGVSTGFGA 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            +KE +G+ + K +  ++W A  L+D QL YAA+DV +L  L     EK+   G      
Sbjct: 121 LVKEYVGVELDKGEARTNWLARPLTDRQLNYAAADVFYLLPLYETLLEKVGAAGYCKALE 180

Query: 182 SCCNFLM 188
             CN  M
Sbjct: 181 QECNATM 187


>gi|163752438|ref|ZP_02159629.1| ribonuclease D [Shewanella benthica KT99]
 gi|161327662|gb|EDP98855.1| ribonuclease D [Shewanella benthica KT99]
          Length = 380

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 7/161 (4%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R  D + +DTE +       RL ++Q   G     I  +A    N     G+L +     
Sbjct: 29  RQSDLLVLDTEFVRTRTFYARLGLIQAYDGKTLALIDPVAVN--NLSEFWGLLAEPGITT 86

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISKAQ 135
           + H    D+ V       +   +F ++IA+ L       HGL     +++ L I++ K +
Sbjct: 87  VLHSCSEDLEVFARNGHCQPANLFDSQIAAALCGL---GHGLGYAKLVEQTLDISLDKGE 143

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             +DW    LS+ QL YAA+DV +L+ L  Q  EKLQ+ GR
Sbjct: 144 SRTDWMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQQQGR 184


>gi|320157018|ref|YP_004189397.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
 gi|319932330|gb|ADV87194.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
          Length = 390

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE +       +L ++QL  GD T+ +I       +      +L D    
Sbjct: 38  AREADVVMLDTEFVRTRTYYPQLGLIQLFDGD-TLSLIDPTV-LTDMSAFTELLNDASVM 95

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINIS 132
           K+ H    D+ V    FG    P+  T+I +         HGL      L    L + + 
Sbjct: 96  KVLHACGEDLEVFHNAFGAIPVPMVDTQIMAAFL-----GHGLSTGFAALVEQYLNVELD 150

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           K++  +DW A  LSD+QL+YAA+DV +L  L     EK+   G
Sbjct: 151 KSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMEAG 193


>gi|254361720|ref|ZP_04977856.1| ribonuclease D [Mannheimia haemolytica PHL213]
 gi|261492043|ref|ZP_05988618.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495020|ref|ZP_05991488.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153093246|gb|EDN74252.1| ribonuclease D [Mannheimia haemolytica PHL213]
 gi|261309336|gb|EEY10571.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312326|gb|EEY13454.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 372

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 3/176 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +        L ++QL  G   V +I        +P  V +L D+   
Sbjct: 23  ARKTKVVALDTEFIRTRTYYPILGLIQLFDGQ-QVSLIDPNTISDFSP-FVSLLADKNII 80

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  Y F     P+  T++ +       +  G    +   L I + K   
Sbjct: 81  KVLHACSEDLEVFEYQFKQLPEPMLDTQVMAAFAGIGISM-GFAKLVSHYLNIELDKGAS 139

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            +DW A  LS EQLQYAA+DV +L  +  +  + L +          C  L+ +A+
Sbjct: 140 RTDWLARPLSAEQLQYAAADVWYLLPVYEKLAQALTKSTWQSAVAEECVALLKKAK 195


>gi|157370999|ref|YP_001478988.1| ribonuclease D [Serratia proteamaculans 568]
 gi|157322763|gb|ABV41860.1| ribonuclease D [Serratia proteamaculans 568]
          Length = 390

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 7/170 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IA+DTE +       +L ++QL  G+    +D + I   Q      + +L + +  K  H
Sbjct: 42  IALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQWQP----FIELLSNTQVVKFLH 97

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
            G  D+ V    F     P+  T+I +  T    +  G    + E + + + K++  +DW
Sbjct: 98  AGSEDLEVFLNAFKTLPTPMVDTQILAAFTGRPMS-CGFATLVAEYMEVELDKSEARTDW 156

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            A  L+++Q  YAA+DV +L  +  +  ++ +  G +  A++ C  L  R
Sbjct: 157 LARPLTEKQCVYAAADVFYLLPMAKRLVQETEEAGWTAAASNECLLLCQR 206


>gi|262394860|ref|YP_003286714.1| ribonuclease D [Vibrio sp. Ex25]
 gi|262338454|gb|ACY52249.1| ribonuclease D [Vibrio sp. Ex25]
          Length = 388

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 11/178 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE + +     +L ++QL  G+  + +I         P  V +L D    
Sbjct: 35  AREADVVMLDTEFVRIRTFYPQLGLIQLFDGN-RLSLIDPTELTDMTP-FVALLKDTSVL 92

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132
           K+ H    D+ V    FG    P+  T++ +         HGL       ++E LG+ + 
Sbjct: 93  KVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFASLVEEYLGVELD 147

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+ + G  +      + L+ +
Sbjct: 148 KSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTQAGWWEAVQQESDLLVSK 205


>gi|319786955|ref|YP_004146430.1| ribonuclease D [Pseudoxanthomonas suwonensis 11-1]
 gi|317465467|gb|ADV27199.1| ribonuclease D [Pseudoxanthomonas suwonensis 11-1]
          Length = 364

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 8/171 (4%)

Query: 10  DIPAECAARYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           D PAE   R   A   I +DTE +       RL +VQ++ G    D++ + A     P  
Sbjct: 8   DQPAELLRRLQSAPSRIGLDTEFIRERTFWPRLALVQMAVGG---DVLLVDALVPGMPEA 64

Query: 67  VGMLVDEKRE-KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           +   +D     K+ H    D+       G   RP++ T++A+ L          +  + +
Sbjct: 65  IAAWLDAPHVLKVMHSASEDLVTFRCACGTVPRPMYDTQVAAALAGFGAGMG-YQRLVAQ 123

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           + G  ++K +  SDW    LS  QL+YAA DV HL A+      +L+ LGR
Sbjct: 124 VTGTTLAKGETRSDWMRRPLSPAQLEYAADDVRHLDAVYQATLARLRELGR 174


>gi|70728873|ref|YP_258622.1| ribonuclease D [Pseudomonas fluorescens Pf-5]
 gi|68343172|gb|AAY90778.1| ribonuclease D [Pseudomonas fluorescens Pf-5]
          Length = 377

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 10/117 (8%)

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHG 118
           N   L  +L +    K+ H    D+ VL    G    P+F T++A+     Y N     G
Sbjct: 64  NWQPLAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAA----AYLNLGFSMG 119

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
               ++E+LGI++ K +  SDW    LS+ Q+ YAA D VHL  +   FTE   RL 
Sbjct: 120 YSRLVQEVLGIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAQV---FTELRPRLS 173


>gi|269967938|ref|ZP_06181978.1| ribonuclease D [Vibrio alginolyticus 40B]
 gi|269827461|gb|EEZ81755.1| ribonuclease D [Vibrio alginolyticus 40B]
          Length = 388

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 11/178 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE + +     +L ++QL  G+  + +I         P  V +L D    
Sbjct: 35  AREADVVMLDTEFVRIRTFYPQLGLIQLFDGN-RLSLIDPTELTDMTP-FVALLKDTSVL 92

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGINIS 132
           K+ H    D+ V    FG    P+  T++ +         HGL       ++E LG+ + 
Sbjct: 93  KVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFASLVEEYLGVELD 147

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+ + G  +      + L+ +
Sbjct: 148 KSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAGWWEAVQQESDLLVSK 205


>gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2]
 gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2]
          Length = 377

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 3   TIRVHEGDIPAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLS-PGDG-TVDIIRIAAG 59
           T+  ++ D+ A C     +  +A D E   +   ++++C+VQ++ P D   VD + I   
Sbjct: 5   TLIENDEDLAARCDLLKTEKRLAFDLEADSMHHFKEKVCLVQMADPNDSFVVDPLSI--- 61

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +   L  +  D    K+FH   FDI  L   F + V  +F T+IA R       +  L
Sbjct: 62  -DDLSVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNNLFDTEIACRFL--GIQKRSL 118

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
              L++   + + K  Q +DWS   LS E + Y+ +DV +L  L     ++L+  GR
Sbjct: 119 AALLEKHFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLELSDILKKRLEDEGR 175


>gi|78048167|ref|YP_364342.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78036597|emb|CAJ24288.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 363

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 3/189 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +H  ++     A     I +DTE +       +L +VQ++ GD  + I  +  G   A  
Sbjct: 6   IHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGDEILLIDPLIPGMNAA-- 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      K+ H    D+       G   RP+F T+IA+ L          K  ++E
Sbjct: 64  LKEWLTAPDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           + G  ++K +  SDW    LS  QL+YAA DV +L A+    T +L   GR +       
Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEWLAEDAE 182

Query: 186 FLMDRAELD 194
            L+   E D
Sbjct: 183 RLLATVEHD 191


>gi|218439906|ref|YP_002378235.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
 gi|218172634|gb|ACK71367.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
          Length = 308

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 20/166 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLV-----GMLVD 72
           V  + +DTE+  L  ++ RL ++Q+   P D       I     N P++V      ++V+
Sbjct: 20  VKILWLDTESTDLNSKKSRLSLIQVLAYPEDTNGSRTYIFDVLDN-PDIVDYFIEKIMVN 78

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHGLKDNLKELLG- 128
           ++  KIFH  + D+  L    G + + V CT   S+    +      H LK  L E L  
Sbjct: 79  DQINKIFHNAQHDLQFLG---GKKAKNVTCTLKLSKTIPYHILPVPNHTLK-TLTEYLTD 134

Query: 129 -INISKAQQSSDWSADDLSDEQLQYAASDVV---HLHALRLQFTEK 170
             N+SK +Q+SDWS   LS +QL YA  D V   H+H   L+  ++
Sbjct: 135 FKNVSKEEQTSDWSQRPLSQKQLDYAKMDPVYLAHIHGRLLELNQQ 180


>gi|332667981|ref|YP_004450769.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100]
 gi|332336795|gb|AEE53896.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100]
          Length = 395

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           ++ +  D+E +G      RLC++Q++   G   I       KN    + M+ +    K+ 
Sbjct: 23  IEWMCFDSEFVGEKRFTTRLCLIQVATRHGLFLIDPFPL--KNLDPFLEMIENPNIVKVT 80

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H G  D  +L+ +FG   +  F T+IA+     Y      K  ++  L IN++K+   +D
Sbjct: 81  HAGENDYRLLYASFGTIPKNTFDTQIAAGFL-GYRYPLAFKKLVETELKINMNKSFTVAD 139

Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163
           W A   +  QL+YA  D+  L+ L
Sbjct: 140 WEARPFNQNQLKYAIQDIEPLYDL 163


>gi|294626013|ref|ZP_06704623.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599683|gb|EFF43810.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 363

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G   A  
Sbjct: 6   THPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L+     K+ H    D+       G   RP+F T+IA+ L          K  ++E
Sbjct: 64  LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           + G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L   GR +      +
Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLTEQGRLEWLAEDAD 182

Query: 186 FLMDRAELD 194
            L+   E D
Sbjct: 183 RLLATVEHD 191


>gi|154508933|ref|ZP_02044575.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798567|gb|EDN80987.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
           17982]
          Length = 414

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 94  GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
           G+R   +F T+IA+RL      + GL   ++++LG+ + K  Q+SDWS   L  E L+YA
Sbjct: 117 GLRPSTLFDTEIAARLI--GLERFGLAAVVEQVLGLGLVKDHQASDWSVRPLPKEWLRYA 174

Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           A DV  L  L  + +++L  +GR + A     + +
Sbjct: 175 ALDVELLTELYYRLSKRLDEMGRWEWAQQEFGYAL 209


>gi|88705065|ref|ZP_01102777.1| ribonuclease D [Congregibacter litoralis KT71]
 gi|88700760|gb|EAQ97867.1| ribonuclease D [Congregibacter litoralis KT71]
          Length = 370

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 7/143 (4%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREK 77
            D IAVDTE +        + ++QL   D    +D + I+    N   L  +L D    K
Sbjct: 22  ADEIAVDTEFMRRNSYYPHIALLQLCTDDHAWLIDPLTIS----NLDGLRALLTDSACIK 77

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V  +  GV   P+  T+ A+ L        G +  +KELLG+ + K +  
Sbjct: 78  VLHSCSEDLEVFRHWLGVLPSPLVDTQRATALLGKGFGL-GYRALVKELLGVELDKGETR 136

Query: 138 SDWSADDLSDEQLQYAASDVVHL 160
           SDW    LS+ Q  YAA DV+ L
Sbjct: 137 SDWLKRPLSESQCHYAALDVLEL 159


>gi|325928069|ref|ZP_08189282.1| ribonuclease D [Xanthomonas perforans 91-118]
 gi|325541567|gb|EGD13096.1| ribonuclease D [Xanthomonas perforans 91-118]
          Length = 363

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 3/189 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +H  ++     A     I +DTE +       +L +VQ++ GD  + I  +  G   A  
Sbjct: 6   IHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGDEILLIDPLIPGMNAA-- 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      K+ H    D+       G   RP+F T+IA+ L          K  ++E
Sbjct: 64  LKEWLTATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           + G  ++K +  SDW    LS  QL+YAA DV +L A+    T +L   GR +       
Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEWLAEDAE 182

Query: 186 FLMDRAELD 194
            L+   E D
Sbjct: 183 RLLATVEHD 191


>gi|188991267|ref|YP_001903277.1| hypothetical protein xccb100_1872 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733027|emb|CAP51225.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 362

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE +       +L +VQ++ G+  + I  +  G  +A  L   LV     K+ H  
Sbjct: 22  IGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMTDA--LKDWLVAPDIVKVMHSA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+       GV  RP+F T+IA+ L          K  ++E+ G  ++K +  SDW  
Sbjct: 80  SEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQEVTGTLLTKGETRSDWMR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175
             LS  QL+YAA DV +L A+    T KL    RLG
Sbjct: 139 RPLSPAQLEYAADDVRYLFAIHDALTAKLTAQDRLG 174


>gi|293192610|ref|ZP_06609564.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
 gi|292820117|gb|EFF79114.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
          Length = 414

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 94  GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
           G+R   +F T+IA+RL      + GL   ++++LG+ + K  Q+SDWS   L  E L+YA
Sbjct: 117 GLRPSALFDTEIAARLI--GLERFGLAAVVEQVLGLGLVKDHQASDWSVRPLPKEWLRYA 174

Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLA 180
           A DV  L  L  + +++L  +GR + A
Sbjct: 175 ALDVELLTELYYRLSKRLDEMGRWEWA 201


>gi|289665658|ref|ZP_06487239.1| ribonuclease D [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 210

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            H  ++     A     I +DTE +       +L +VQL+ G+  + I  +  G   A  
Sbjct: 6   THPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQLAIGEEILLIDPLIPGMNEA-- 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      K+ H    D+       GV  RP+F T+IA+ L          K  ++E
Sbjct: 64  LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLG 175
           + G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L    RLG
Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQDRLG 175


>gi|21243147|ref|NP_642729.1| ribonuclease D [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108668|gb|AAM37265.1| ribonuclease D [Xanthomonas axonopodis pv. citri str. 306]
          Length = 363

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G   A  
Sbjct: 6   THPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L+     K+ H    D+       G   RP+F T+IA+ L          K  ++E
Sbjct: 64  LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           + G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L   GR +      +
Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLAEQGRLEWLAEDAD 182

Query: 186 FLMDRAELD 194
            L+   E D
Sbjct: 183 RLLATVEHD 191


>gi|262375228|ref|ZP_06068461.1| ribonuclease D [Acinetobacter lwoffii SH145]
 gi|262309482|gb|EEY90612.1| ribonuclease D [Acinetobacter lwoffii SH145]
          Length = 380

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLK----DNLKELLGI 129
           ++ IFH    DI +++ YT    +  VF T++           HGL+    + LK++L +
Sbjct: 72  QQNIFHACSEDIDLIYHYTQKKSLSNVFDTQVGMSFLG-----HGLQVSYQNALKQMLEV 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS EQL YAA+DV +L  L  +  + L      D A   C FL
Sbjct: 127 DIEKDQTRSDWLARPLSSEQLLYAANDVHYLVQLSEKIKQDLDSKDLLDFALQDCRFL 184


>gi|294666468|ref|ZP_06731711.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292603774|gb|EFF47182.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 363

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 3/189 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G   A  
Sbjct: 6   THPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L+     K+ H    D+       G   RP+F T+IA+ L          K  ++E
Sbjct: 64  LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           + G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L   GR +       
Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLTEQGRLEWQAEDAE 182

Query: 186 FLMDRAELD 194
            L+   E D
Sbjct: 183 RLLATVEHD 191


>gi|260366009|ref|ZP_05778494.1| ribonuclease D [Vibrio parahaemolyticus K5030]
 gi|308111259|gb|EFO48799.1| ribonuclease D [Vibrio parahaemolyticus K5030]
          Length = 292

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66
           D+   CA AR  D + +DTE + +     +L ++QL  G     +D   +     +  + 
Sbjct: 27  DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122
           + +L D    K+ H    D+ V    FG    P+  T++ +         HGL       
Sbjct: 83  IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAG 190


>gi|226945355|ref|YP_002800428.1| ribonuclease D protein [Azotobacter vinelandii DJ]
 gi|226720282|gb|ACO79453.1| ribonuclease D protein [Azotobacter vinelandii DJ]
          Length = 375

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 10/168 (5%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  + + CA  R +  +A+DTE + +     +  +VQ+  G     I  +  G      L
Sbjct: 11  DASLASHCARWRQLPFVALDTEFVRVDTFYPQTGLVQVGDGRSAYLIDPLDIGDWRP--L 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNL 123
             +L D    K+ H    D+ VL    G    P+F T++A+     Y N     G    +
Sbjct: 69  AALLEDPAVVKVLHACSEDLEVLLRLTGSLPLPLFDTQLAA----AYLNLGFSMGYSRLV 124

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           + +LGI + K +  SDW    LS+ Q++YAA D VHL  L +    +L
Sbjct: 125 QAVLGIELPKGETRSDWLQRPLSELQIRYAAEDAVHLAELYVALGARL 172


>gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana]
          Length = 834

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDI--IRIAAGQKNAPNLVGMLVDE 73
           R V+  AVD E       +   C++Q+S    D  VD   +RI  G    P L  +  D 
Sbjct: 240 RSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIG----PYLREIFKDP 295

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K++K+ H    DI  L   FG+ V  +F T  ASR+     N   L+  L+   G+  +K
Sbjct: 296 KKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERN--SLEFLLQHFCGVTANK 353

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             Q++DW    L +E  +YA  D  +L  +      +LQR+ + D  T
Sbjct: 354 EYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHT 401


>gi|15239221|ref|NP_198440.1| 3'-5' exonuclease domain-containing protein / helicase and RNase D
           C-terminal domain-containing protein / HRDC
           domain-containing protein [Arabidopsis thaliana]
          Length = 838

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDI--IRIAAGQKNAPNLVGMLVDE 73
           R V+  AVD E       +   C++Q+S    D  VD   +RI  G    P L  +  D 
Sbjct: 245 RSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIG----PYLREIFKDP 300

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K++K+ H    DI  L   FG+ V  +F T  ASR+     N   L+  L+   G+  +K
Sbjct: 301 KKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERN--SLEFLLQHFCGVTANK 358

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             Q++DW    L +E  +YA  D  +L  +      +LQR+ + D  T
Sbjct: 359 EYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHT 406


>gi|262199835|ref|YP_003271044.1| ribonuclease D [Haliangium ochraceum DSM 14365]
 gi|262083182|gb|ACY19151.1| Ribonuclease D [Haliangium ochraceum DSM 14365]
          Length = 400

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV-DEKREKIFHYGRFDIAVLFYTFGVRV 97
           L +VQ+S GD     I +       P  V  L+ D     + H  + D+ +L   F +  
Sbjct: 46  LALVQVSWGDPEAPEIALIDSVAVDPTPVLRLIGDPAVVSVAHAAKQDLGILAARFDIFA 105

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
              + T+IA+        Q G    +  LLG+ + KA Q + W    LS  QL+YAA DV
Sbjct: 106 ENFWDTQIAAAFV-GMAEQIGYGKLVDALLGVQLDKASQFTKWLERPLSPAQLRYAADDV 164

Query: 158 VHLHALRLQFTEKLQRLGR 176
            +L  +    +++L  LGR
Sbjct: 165 RYLPRVWAHLSQRLDELGR 183


>gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
 gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
          Length = 325

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66
           D+   CA AR  D + +DTE + +     +L ++QL  G     +D   +     +  + 
Sbjct: 27  DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122
           + +L D    K+ H    D+ V    FG    P+  T++ +         HGL       
Sbjct: 83  IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAG 190


>gi|152996550|ref|YP_001341385.1| ribonuclease D [Marinomonas sp. MWYL1]
 gi|150837474|gb|ABR71450.1| ribonuclease D [Marinomonas sp. MWYL1]
          Length = 384

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVDTE +          ++Q+S GD  V I  ++  +     L  ++VD    K+FH  
Sbjct: 37  IAVDTEFIRRTTYFPITGLIQISEGDKAVLIDPLSIDEWEP--LRNLMVDPSVMKVFHAC 94

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V     GV   P + T+I         +   +K  + E L I ++K +  SDW  
Sbjct: 95  SEDLDVFDRLLGVLPTPFYDTQIGEAYASAQWSLSYVK-LIHEYLQIEVAKDETRSDWVQ 153

Query: 143 DDLSDEQLQYAASDVVHL 160
             L+D Q +YAA DVV+L
Sbjct: 154 RPLTDAQKRYAALDVVYL 171


>gi|153840116|ref|ZP_01992783.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
 gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
          Length = 341

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66
           D+   CA AR  D + +DTE + +     +L ++QL  G     +D   +     +  + 
Sbjct: 27  DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122
           + +L D    K+ H    D+ V    FG    P+  T++ +         HGL       
Sbjct: 83  IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAG 190


>gi|21231744|ref|NP_637661.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768130|ref|YP_242892.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004]
 gi|21113449|gb|AAM41585.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573462|gb|AAY48872.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004]
          Length = 362

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE +       +L +VQ++ G+  + I  +  G  +A  L   L+     K+ H  
Sbjct: 22  IGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMTDA--LKDWLIAPDIVKVMHSA 79

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+       GV  RP+F T+IA+ L          K  ++E+ G  ++K +  SDW  
Sbjct: 80  SEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQEVTGTLLTKGETRSDWMR 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175
             LS  QL+YAA DV +L A+    T KL    RLG
Sbjct: 139 RPLSPAQLEYAADDVRYLFAIHDALTAKLTAQDRLG 174


>gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana]
 gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
          Length = 870

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDI--IRIAAGQKNAPNLVGMLVDE 73
           R V+  AVD E       +   C++Q+S    D  VD   +RI  G    P L  +  D 
Sbjct: 277 RSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIG----PYLREIFKDP 332

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K++K+ H    DI  L   FG+ V  +F T  ASR+     N   L+  L+   G+  +K
Sbjct: 333 KKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERN--SLEFLLQHFCGVTANK 390

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             Q++DW    L +E  +YA  D  +L  +      +LQR+ + D  T
Sbjct: 391 EYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHT 438


>gi|330808098|ref|YP_004352560.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376206|gb|AEA67556.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 377

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHG 118
           N   L  +L +    K+ H    D+ VL    G    P+F T++A+     Y N     G
Sbjct: 64  NWQPLAALLENPAVLKVLHACSEDLEVLLRLTGSLPAPLFDTQLAA----AYLNLGFSMG 119

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               ++E+LGI + K +  SDW    LS+ Q+ YAA D VHL  + +    KL
Sbjct: 120 YSRLVQEVLGIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVLLRPKL 172


>gi|325914723|ref|ZP_08177061.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937]
 gi|325539000|gb|EGD10658.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937]
          Length = 364

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 3/171 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G   A  
Sbjct: 6   THPSELTERLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNEA-- 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      K+ H    D+       GV  RP+F T+IA+ L          K  ++E
Sbjct: 64  LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           + G  ++K +  SDW    LS  QL+YAA DV +L A+  + + +L  L R
Sbjct: 123 VTGTLLTKGETRSDWMRRPLSASQLEYAADDVRYLFAIHDELSRRLTELDR 173


>gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
 gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
          Length = 372

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66
           D+   CA AR  D + +DTE + +     +L ++QL  G     +D   +     +  + 
Sbjct: 27  DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122
           + +L D    K+ H    D+ V    FG    P+  T++ +         HGL       
Sbjct: 83  IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197

Query: 183 CCNFLMDR 190
             + L+ +
Sbjct: 198 ESDLLVSK 205


>gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
 gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329]
          Length = 388

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66
           D+   CA AR  D + +DTE + +     +L ++QL  G     +D   +     +  + 
Sbjct: 27  DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122
           + +L D    K+ H    D+ V    FG    P+  T++ +         HGL       
Sbjct: 83  IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197

Query: 183 CCNFLMDR 190
             + L+ +
Sbjct: 198 ESDLLVSK 205


>gi|206576967|ref|YP_002237811.1| ribonuclease D [Klebsiella pneumoniae 342]
 gi|290508867|ref|ZP_06548238.1| ribonuclease D [Klebsiella sp. 1_1_55]
 gi|206566025|gb|ACI07801.1| ribonuclease D [Klebsiella pneumoniae 342]
 gi|289778261|gb|EFD86258.1| ribonuclease D [Klebsiella sp. 1_1_55]
          Length = 375

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 7/168 (4%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGT-VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
           +DTE +       +L ++QL   DGT V +I        AP +  +L+++   K  H G 
Sbjct: 27  LDTEFVRTRTYYPQLGLLQLF--DGTQVSLIDPLTISDWAP-MRELLLNQDVTKYLHAGS 83

Query: 84  FDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            D+ V    F +  +P+  T+I A+   R  +   G    ++E  G+ + K++  +DW A
Sbjct: 84  EDLEVFLNAFSLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKSESRTDWLA 141

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             L++ Q +YAA+DV +L  +  Q   +  R G    A   C  +  R
Sbjct: 142 RPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLSAALDECRLMQQR 189


>gi|262194484|ref|YP_003265693.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
 gi|262077831|gb|ACY13800.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
          Length = 925

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           LC+VQL+  + TV +I   A     P +  +L      KI H  +F+ +V F   G+ + 
Sbjct: 791 LCLVQLAAPEYTV-VIDARAVDDLGP-VSELLASRAVVKIIHNAQFERSV-FRKLGMDIE 847

Query: 99  PVFCT-KIASRL-TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
            VF T K++ RL  R     HGL       LG  + K +Q SDW+   L+  QL YAA D
Sbjct: 848 NVFDTLKVSRRLRGRKREGGHGLGAVCARELGRELDKHEQRSDWTLRPLTQRQLDYAALD 907

Query: 157 VVHLHALRLQFTEKL 171
              L  L  +FT +L
Sbjct: 908 AEVLLVLHERFTREL 922


>gi|288934742|ref|YP_003438801.1| ribonuclease D [Klebsiella variicola At-22]
 gi|288889451|gb|ADC57769.1| ribonuclease D [Klebsiella variicola At-22]
          Length = 371

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 7/168 (4%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGT-VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
           +DTE +       +L ++QL   DGT V +I        AP +  +L+++   K  H G 
Sbjct: 23  LDTEFVRTRTYYPQLGLLQLF--DGTQVSLIDPLTISDWAP-MRELLLNQDVTKYLHAGS 79

Query: 84  FDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            D+ V    F +  +P+  T+I A+   R  +   G    ++E  G+ + K++  +DW A
Sbjct: 80  EDLEVFLNAFSLMPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVALDKSESRTDWLA 137

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             L++ Q +YAA+DV +L  +  Q   +  R G    A   C  +  R
Sbjct: 138 RPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLSAALDECRLMQQR 185


>gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
 gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
          Length = 354

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 16/173 (9%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNL 66
           D+   CA AR  D + +DTE + +     +L ++QL  G     +D   +     +  + 
Sbjct: 27  DLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDPTELT----DMTSF 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN---- 122
           + +L D    K+ H    D+ V    FG    P+  T++ +         HGL       
Sbjct: 83  IELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-----GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAG 190


>gi|156933634|ref|YP_001437550.1| ribonuclease D [Cronobacter sakazakii ATCC BAA-894]
 gi|156531888|gb|ABU76714.1| hypothetical protein ESA_01456 [Cronobacter sakazakii ATCC BAA-894]
          Length = 369

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR   A+A+DTE +       +L ++QL  G+  V +I        AP    +L D+   
Sbjct: 15  ARTQRALALDTEFVRTRTYYPQLGLIQLYDGEN-VALIDPLTITDWAP-FQALLQDQNVT 72

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F +   P   T++ +     +    G    ++   G+ + K++ 
Sbjct: 73  KFLHAGSEDLEVFQNAFSMMPDPFIDTQVLASFV-GHPLSCGFATLVEHHTGVVLDKSES 131

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  L++ Q  YAA+DV +L  +  +  E+++  G    A + C  +  R
Sbjct: 132 RTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAINECRLMTQR 185


>gi|149196457|ref|ZP_01873512.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155]
 gi|149140718|gb|EDM29116.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155]
          Length = 372

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ +         + +F T++A   T     Q  L     E++ I ISK QQ
Sbjct: 76  KILHSPDQDLKLFKLFCDAEAKNIFDTQLAYAFTGA-PKQVSLAKLCLEMMDIEISKTQQ 134

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            SDW+   L D QL YAA DV +L  +     EKL+  GR D
Sbjct: 135 VSDWTKRPLKDSQLNYAAEDVRYLIEITETLREKLKENGRYD 176


>gi|71065355|ref|YP_264082.1| putative ribonuclease D [Psychrobacter arcticus 273-4]
 gi|71038340|gb|AAZ18648.1| putative ribonuclease D [Psychrobacter arcticus 273-4]
          Length = 432

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 8/155 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +       RL +VQL+ G+    +  + A Q     L   L+ +    I+H  
Sbjct: 72  VALDTEFIKRDTYYPRLALVQLNTGNH---VYLLDAPQLQLSELWQALI-KVDVAIWHAC 127

Query: 83  RFDIAVLFYTFGVR-VRPVFCTKIA-SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             D+ + +   G   +  +F T+IA S LT     Q G +  L E L ++I K Q  SDW
Sbjct: 128 GEDLGIFYLLSGCPPLTNIFDTQIALSYLTGQL--QMGYQQALDEQLDMHIDKEQSQSDW 185

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
               LSDEQ QYA  DV  L AL L     L+  G
Sbjct: 186 LQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQG 220


>gi|262372600|ref|ZP_06065879.1| ribonuclease D [Acinetobacter junii SH205]
 gi|262312625|gb|EEY93710.1| ribonuclease D [Acinetobacter junii SH205]
          Length = 380

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 12/104 (11%)

Query: 71  VDEKREKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLK----DNLKE 125
           V E ++ IFH    DI +++ Y     ++ VF T++A          HGL+    + LK 
Sbjct: 68  VFEAQQNIFHACGEDIDLIYHYADQKPLKNVFDTQVAMAFLG-----HGLQVSYQNALKT 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL--RLQF 167
            L I+I K Q  SDW A  LS EQ+ YAA+DV++L+ L  RL+F
Sbjct: 123 CLNIDIDKDQTRSDWLARPLSQEQMSYAANDVLYLNKLAERLKF 166


>gi|325107025|ref|YP_004268093.1| ribonuclease D [Planctomyces brasiliensis DSM 5305]
 gi|324967293|gb|ADY58071.1| Ribonuclease D [Planctomyces brasiliensis DSM 5305]
          Length = 401

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A DTE +     R RLC++Q    +  V +        +      ++ DE+ E I H G
Sbjct: 25  VAFDTEFVSEFTFRPRLCLLQFGTSEEKVAVDPFQLT--DLTPWWEIMADEQTEVIIHGG 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRL-TRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
           R +I   ++  G + + +   +I   L +R +   H     +++++   +   +  +DWS
Sbjct: 83  REEILFCWHAIGKKPQNLIDVQIVQGLLSRGFPLSHSAL--VQKVVRKKVHGKETRTDWS 140

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
              L+ +Q+ YA  DVVHL  +  +   +L++  R+  A   C   +D
Sbjct: 141 KRPLTTKQINYAIEDVVHLIDIAEKQKVRLKKTKRTTWADEECRQFVD 188


>gi|254508462|ref|ZP_05120581.1| ribonuclease D [Vibrio parahaemolyticus 16]
 gi|219548574|gb|EED25580.1| ribonuclease D [Vibrio parahaemolyticus 16]
          Length = 386

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 11/175 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR VD + +DTE +       +L ++QL  G+  + +I      +  P  V +L D    
Sbjct: 34  AREVDVVMLDTEFVRTRTFYPQLGLIQLFDGE-QLSLIDPTELDEMTP-FVELLQDTSVL 91

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINIS 132
           K+ H    D+ V   +FG    P+  T++ +         HGL      L    L + + 
Sbjct: 92  KVLHACGEDLEVFQNSFGCLPYPMVDTQVMAAFL-----GHGLSTGFASLVEHYLQVELD 146

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           K++  +DW A  L+D+QL YAA+DV +L  L  +    +   G  + A    + L
Sbjct: 147 KSESRTDWLARPLTDKQLDYAAADVFYLLPLYEKLLNAVTEAGWWEAAQQESDLL 201


>gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 584

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 52  DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL-T 110
           D+ RI    ++   L+     E +  I H  +FDI  L   FG+  + VF T IAS+L +
Sbjct: 61  DMFRIPQFSEHLKELL-----ENKGVIGHNLKFDIKFLKTNFGIFPQIVFDTMIASQLLS 115

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
                +H L      L   ++ K+QQ S W   +L++EQL+YAA DV  L  +     ++
Sbjct: 116 EDSREKHSLSALSYRLTDNHLDKSQQRSPWGIKNLTEEQLRYAAKDVQVLREIFPVLRDE 175

Query: 171 LQRLGRSDLAT 181
           L R+     AT
Sbjct: 176 LNRIETPHKAT 186


>gi|15827504|ref|NP_301767.1| hypothetical protein ML1040 [Mycobacterium leprae TN]
 gi|221229981|ref|YP_002503397.1| hypothetical protein MLBr_01040 [Mycobacterium leprae Br4923]
 gi|699161|gb|AAA62926.1| u1764u [Mycobacterium leprae]
 gi|13093054|emb|CAC31421.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933088|emb|CAR71135.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 429

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDE---KREKIF 79
           AVDTE        +R  ++Q+   + GTV I  ++ G  N P      V E   K E I 
Sbjct: 51  AVDTERASGFRYSNRAYLIQIRRANAGTVLIDPVSHG--NDPLTALRPVAEVISKDEWIL 108

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG  ++K   ++D
Sbjct: 109 HSADQDLPCLA-EVGMRPPALYDTELAGRLA--GFDRVNLATMVQRLLGFELAKGHGAAD 165

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           WS   L  + L YAA DV  L  LR   ++ L    ++D AT   N+L
Sbjct: 166 WSKRPLPSDWLNYAALDVELLIELRTAISKVLAEQDKTDWATQEFNYL 213


>gi|59712314|ref|YP_205090.1| ribonuclease D [Vibrio fischeri ES114]
 gi|59480415|gb|AAW86202.1| ribonuclease D [Vibrio fischeri ES114]
          Length = 373

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 11/152 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + +DTE +       RL ++Q+  G+    VD + I     +   L  +L +E   K+ H
Sbjct: 25  LMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEI----DDLTPLWDLLKNESVTKVLH 80

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+ V  +  G    P+  T+I +     Y    G    + + LGI + K +  +DW
Sbjct: 81  ACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKLVSDYLGIELDKGEARTDW 139

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            A  LSD+QL YAA+DV +L    L   EKLQ
Sbjct: 140 MARPLSDKQLHYAAADVHYL----LPLFEKLQ 167


>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 575

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 11/150 (7%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGR 83
           +DTET G     DRL +VQL  G G + ++ +   G++    L  +L   ++  + H  +
Sbjct: 27  LDTETTG-----DRLRLVQLG-GQGEIFLLDLFELGERGVLFLKELL--SQKGVVGHNLK 78

Query: 84  FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143
           FD+  L Y + +    VF T +AS+L     ++H L+      LG  + K+ Q SDW + 
Sbjct: 79  FDLKYL-YRYHIEPYAVFDTMVASQLL-AELDRHSLQSVAMHYLGQVLDKSLQLSDWGSR 136

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            L+  QL+YAA DVV +  L     EKL +
Sbjct: 137 VLTKAQLEYAALDVVVVRDLFPILLEKLNQ 166


>gi|326384419|ref|ZP_08206099.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
 gi|326196764|gb|EGD53958.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
          Length = 407

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 78/181 (43%), Gaps = 11/181 (6%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71
           AE   R    IAVDTE         R  +VQL   G G+  I  I     + P+ +  L+
Sbjct: 40  AELIGRGTGPIAVDTERASGYRYSQRAYLVQLKRAGSGSFLIDPI-----SHPDALSPLI 94

Query: 72  D--EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           D  +  E I H    D+  L    G     +F T++A RL      +  L   + E L +
Sbjct: 95  DALDGPEWILHAADQDLPCL-RELGFTPTTLFDTELAGRLLNI--PKVNLAAMVAEFLHL 151

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            ++K   ++DWS   L D+ L YAA DV  L  LR    + L   GR + A     +++ 
Sbjct: 152 GLAKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAVADALSEAGRDEWAAQEFAYVLA 211

Query: 190 R 190
           R
Sbjct: 212 R 212


>gi|156089519|ref|XP_001612166.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
 gi|154799420|gb|EDO08598.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
          Length = 230

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFG 94
           R R  ++Q++  D  +  +    G  + P+ V  +L D    KI H    D+ +++  FG
Sbjct: 80  RTRPAVIQIASNDICLVYLMYKIG--HLPSSVSHILSDPDILKISHGAPSDMRLMYRHFG 137

Query: 95  VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
           VR R      + S           LK  ++ +LG+ +SK QQ S+W A +LS +Q++YAA
Sbjct: 138 VRSRSF--VDLQSVCEELQLRPCSLKSVVQRVLGLRLSKKQQCSNWEAAELSQQQIKYAA 195

Query: 155 SD 156
           +D
Sbjct: 196 TD 197


>gi|197335934|ref|YP_002156528.1| ribonuclease D [Vibrio fischeri MJ11]
 gi|197317424|gb|ACH66871.1| ribonuclease D [Vibrio fischeri MJ11]
          Length = 373

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 11/152 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + +DTE +       RL ++Q+  G+    VD + I     +   L  +L +E   K+ H
Sbjct: 25  LMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEI----DDLTPLWDLLKNESVTKVLH 80

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+ V  +  G    P+  T+I +     Y    G    + + LGI + K +  +DW
Sbjct: 81  ACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKLVSDYLGIELDKGEARTDW 139

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            A  LSD+QL YAA+DV +L    L   EKLQ
Sbjct: 140 MARPLSDKQLHYAAADVHYL----LPLFEKLQ 167


>gi|84624243|ref|YP_451615.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576150|ref|YP_001913079.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84368183|dbj|BAE69341.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520602|gb|ACD58547.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 363

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 6/173 (3%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G   A  
Sbjct: 6   IHPSELTDRLQAARPARIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      K+ H    D+       GV  RP+F T+IA+ L          K  ++E
Sbjct: 64  LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175
           + G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L    RLG
Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLG 175


>gi|93005631|ref|YP_580068.1| 3'-5' exonuclease [Psychrobacter cryohalolentis K5]
 gi|92393309|gb|ABE74584.1| 3'-5' exonuclease [Psychrobacter cryohalolentis K5]
          Length = 380

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 8/166 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +       RL ++QL+ G+    +  + A Q     L   L+ +    I+H  
Sbjct: 20  VALDTEFIKRDTYYPRLALIQLNTGN---HVYLLDAPQLQLSELWQALM-KVDVAIWHAC 75

Query: 83  RFDIAVLFYTFGVR-VRPVFCTKIA-SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             D+ + +   G   +  +F T+IA S LT     Q G +  L E L ++I K Q  SDW
Sbjct: 76  GEDLGIFYLLSGCPPLTNIFDTQIALSYLTGQL--QMGYQQALDEQLDMHIDKEQSQSDW 133

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
               LSDEQ QYA  DV  L AL L     L+  G  +     C  
Sbjct: 134 LQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQGLYEYVWEDCQL 179


>gi|209694623|ref|YP_002262551.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
 gi|208008574|emb|CAQ78749.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
          Length = 374

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 11/152 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + +DTE +       RL ++Q+  G+    VD + I     +   L  +L +E   K+ H
Sbjct: 25  LMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEI----DDLTPLWDLLKNESVTKVLH 80

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+ V  +  G    P+  T+I +     Y    G    + + LG+++ K +  +DW
Sbjct: 81  ACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKLVSDYLGVDLDKGESRTDW 139

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            A  LSD+QL YAA+DV +L    L   EKLQ
Sbjct: 140 MARPLSDKQLDYAAADVHYL----LPLFEKLQ 167


>gi|294141241|ref|YP_003557219.1| ribonuclease D [Shewanella violacea DSS12]
 gi|293327710|dbj|BAJ02441.1| ribonuclease D [Shewanella violacea DSS12]
          Length = 369

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R  D + +DTE +        L ++Q   G     I  +A    N      +L +     
Sbjct: 21  RQSDLLVLDTEFVRTRTYYANLGLIQAYDGKTLALIDPVAIN--NLSEFWSLLTEPGITT 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V       +   +F ++IA+ L   + +  G    +++ L I++ K +  
Sbjct: 79  VLHSCSEDLEVFARNGACQPYNLFDSQIAAALC-GFGHGLGYAKLVEQTLDISLDKGESR 137

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           +DW    LS+ QL YAA+DV +L+ L  Q  EKLQ  GR
Sbjct: 138 TDWMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQEQGR 176


>gi|330445493|ref|ZP_08309145.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489684|dbj|GAA03642.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 375

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 7/177 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73
           +A+   A+ +DTE +       RL ++QL  G+    +D + I     +   L  +L D+
Sbjct: 18  SAKTQAAVMLDTEFVRTRTLYPRLGLIQLFDGEHLSLIDPLEI----DDMEPLWALLRDQ 73

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              K+ H    D+ V  +  G    P+  T++ +     +    G    +KE +G+ + K
Sbjct: 74  SVIKVLHACGEDLEVFQHHAGCLPTPMLDTQLMAAFL-GHGISTGFGALVKEYVGVELDK 132

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +  ++W A  L+ +QL YAA+DV +L  L      K++  G  +     CN +M R
Sbjct: 133 GEARTNWLARPLTAKQLDYAAADVHYLKPLYETLLAKVEATGYMEALQQECNSVMLR 189


>gi|295394778|ref|ZP_06804993.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972374|gb|EFG48234.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030]
          Length = 385

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   +F T++A+RL      + GL    +E++G+ ++K  
Sbjct: 83  EWILHAATQDLGCLAEK-GMRPDALFDTELAARLLNF--ERFGLASLTEEIMGVTLAKEH 139

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            + DWS   L  E L YAA DV  L+ LR +  ++L   G+ + A    + L+
Sbjct: 140 SAVDWSTRPLPHEWLAYAALDVEVLNHLRTELADRLHAQGKWEYARQEFDHLL 192


>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 857

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 10/147 (6%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLVGMLVDE 73
           R V+  AVD E       +   C++Q+S    D  +D +  RI  G    P L  +  D 
Sbjct: 246 RAVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIIDTLKLRIHVG----PYLREVFKDP 301

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            + K+ H    DI  L   FG+ V  +F T  ASR+ +   N   L+  L+   GI  +K
Sbjct: 302 TKRKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERN--SLEHLLRHFCGITANK 359

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160
             Q++DW    L+DE L+Y   D  +L
Sbjct: 360 EYQNADWRLRPLTDEMLRYGREDTHYL 386


>gi|27363618|ref|NP_759146.1| ribonuclease D [Vibrio vulnificus CMCP6]
 gi|27359734|gb|AAO08673.1| ribonuclease D [Vibrio vulnificus CMCP6]
          Length = 390

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 11/163 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE +       +L ++QL  GD T+ +I       +      +L D    
Sbjct: 38  AREADVVMLDTEFVRTRTYYPQLGLIQLFDGD-TLSLIDPTV-LTDMSAFTELLNDASVM 95

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINIS 132
           K+ H    D+ V     G    P+  T+I +         HGL      L    L + + 
Sbjct: 96  KVLHACGEDLEVFHNALGAIPVPMVDTQIMAAFL-----GHGLSTGFAALVEQYLNVELD 150

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           K++  +DW A  LSD+QL+YAA+DV +L  L     EK+   G
Sbjct: 151 KSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMEAG 193


>gi|302525782|ref|ZP_07278124.1| ribonuclease D [Streptomyces sp. AA4]
 gi|302434677|gb|EFL06493.1| ribonuclease D [Streptomyces sp. AA4]
          Length = 420

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 83/183 (45%), Gaps = 10/183 (5%)

Query: 2   TTIRVHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIA 57
           T   V + D  AE  AR      A+AVDTE         +  +VQL   G GTV I  IA
Sbjct: 32  TPPVVADPDALAEACARLAAGTGAVAVDTERASGYRYWPKAYLVQLRREGSGTVLIDPIA 91

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                AP L  +L D   E + H    D+  L     +R R +F T++A RL      + 
Sbjct: 92  LADDLAP-LRDVLNDT--EWVLHAASQDLPCLA-ELNLRPRSLFDTELAGRLA--GYERV 145

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            L   ++ LLG  + K   ++DWS   L  + L YAA DV  L+ LR +   +L   G+ 
Sbjct: 146 ALGTLVELLLGYTLEKGHSAADWSKRPLPVDWLNYAALDVELLNELREKLEAELTAQGKL 205

Query: 178 DLA 180
           + A
Sbjct: 206 EWA 208


>gi|90416003|ref|ZP_01223936.1| ribonuclease D [marine gamma proteobacterium HTCC2207]
 gi|90332377|gb|EAS47574.1| ribonuclease D [marine gamma proteobacterium HTCC2207]
          Length = 374

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 7/164 (4%)

Query: 1   MTTIR--VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           MTTI   +      AE   +  DA  +A+DTE +       +L ++QLS G+    +I  
Sbjct: 1   MTTINHWIDNSQQLAELCEQLQDATELAIDTEFMRSDTFFAKLALIQLSDGEQCW-LIDT 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            A ++  P L  +L   +   +FH    D+ VL     VR + +F +++A+ +     + 
Sbjct: 60  PAIEQLQP-LTALLNGPQLTLVFHSCGEDLEVLDQVLSVRPKKLFDSQVAAGIVNIGYSM 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            G    ++ +L I + K    SDW A  LSD Q +YAA DV++L
Sbjct: 119 -GYARLVENMLQIELGKEDTRSDWLARPLSDRQKRYAADDVLYL 161


>gi|58582365|ref|YP_201381.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426959|gb|AAW75996.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 416

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 6/156 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE +       +L +VQ++ G+  + I  +  G   A  L   L      K+ H  
Sbjct: 76  IGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA--LKEWLTATDIVKVMHSA 133

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+       GV  RP+F T+IA+ L          K  ++E+ G  ++K +  SDW  
Sbjct: 134 SEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQEVTGTLLTKGETRSDWMR 192

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175
             LS  QL+YAA DV +L A+  + T +L    RLG
Sbjct: 193 RPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLG 228


>gi|212635098|ref|YP_002311623.1| ribonuclease D [Shewanella piezotolerans WP3]
 gi|212556582|gb|ACJ29036.1| Ribonuclease D [Shewanella piezotolerans WP3]
          Length = 369

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 5/168 (2%)

Query: 13  AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A   A+Y +A  + +DTE +       RL ++Q   G     I  +A    N      +L
Sbjct: 14  AALVAQYREAKLLVIDTEFVRTRTYYARLGLIQAYDGKTLALIDPLAV--TNLSLFWALL 71

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D    K+ H    D+ V       +   +F ++IA+ L        G    +++ L I 
Sbjct: 72  TDSSIIKLLHSCSEDLEVFAKNGACQPNKLFDSQIAAGLCGMGYG-LGYAKLVEQTLDIT 130

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           + K +  +DW    LS+ QL YAA+DV +L+ L  Q  +KL+  GR D
Sbjct: 131 LDKGESRTDWLKRPLSEAQLNYAANDVYYLYELYPQLVDKLESQGRLD 178


>gi|296171911|ref|ZP_06852975.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295893910|gb|EFG73681.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 430

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 7/188 (3%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTV--DIIRIAAG 59
           ++ V E +  AE   R     AVD E        +R  ++Q+   G GTV  D +   A 
Sbjct: 35  SVTVGEIEAAAELLGRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGAD 94

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
              A   V  ++DE  E I H    D+  L    G++   ++ T++A RL      +  L
Sbjct: 95  PLEALRPVAEVLDED-EWILHSADQDLPCL-AEVGLQPPALYDTELAGRLA--GFERVNL 150

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ LLG  ++K   ++DWS   L +E L YAA DV  L  LR    + L + G++  
Sbjct: 151 ATMVERLLGSGLAKGHGAADWSKRPLPEEWLNYAALDVELLIELRGAIADVLAQQGKTGW 210

Query: 180 ATSCCNFL 187
           A    ++L
Sbjct: 211 AAEEFDYL 218


>gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299]
 gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299]
          Length = 332

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +AVD E       +   C++Q+S    D  VD + +    ++A  L  ++ D +  K+FH
Sbjct: 57  MAVDLEHHSYRSFQGFTCVIQVSTRRMDFVVDALELRGLIRDA--LGPVMADPRVMKVFH 114

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L   FG+ V  +F T  A+R+    +   GL   L     +   K  Q +DW
Sbjct: 115 GADMDVQWLQRDFGIYVVGMFDTGQAARVLELPSK--GLAYLLDHYCSVKADKRFQLADW 172

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               LS+E + YA  D  HL  +  +  ++L  +GR D
Sbjct: 173 RVRPLSEEMISYARGDTHHLLYVYDRLRQQLDAVGRGD 210


>gi|54308269|ref|YP_129289.1| ribonuclease D [Photobacterium profundum SS9]
 gi|46912697|emb|CAG19487.1| hypothetical ribonuclease D [Photobacterium profundum SS9]
          Length = 374

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    + +DTE +       +L ++Q+  GD  V I  I     +      +L D+   
Sbjct: 19  ARTHSVVMLDTEFVRTRTLYPKLGLIQMFDGDNLVLIDPIEID--DLTPFWDLLRDQSII 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  +  G    P+  T++ +     +    G    + E +G+++ K + 
Sbjct: 77  KVLHACGEDLEVFQHHAGCLPTPMIDTQLMAAFL-GHGVSAGFGSLVSEYVGVDLEKGEA 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            ++W A  L+D+QL YAA+DV +L  L     EK++  G  +     C  LM +
Sbjct: 136 RTNWLARPLTDKQLDYAAADVFYLLPLYETLLEKVKAKGWMEALELECAALMQK 189


>gi|317491812|ref|ZP_07950247.1| ribonuclease D [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920246|gb|EFV41570.1| ribonuclease D [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 371

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 8/179 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLV 71
           E A+R+   IA+DTE +       +L ++QL  G+    +D + I   Q      V +L 
Sbjct: 17  EQASRHA-YIALDTEFVRTRTYYPQLGLIQLFDGETLTLIDPLPITDWQP----FVALLK 71

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           + +  K+ H    D+ V  + F     P+  T+I +  T    +  G    + + L + +
Sbjct: 72  NPEVTKLLHACSEDLEVFLHEFQTLPTPMIDTQILAAFTGRALS-CGFAAMVNDYLQVEL 130

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            K++  +DW A  L++ Q +YAA+DV +L  L  +   ++   G  D A   C  L  R
Sbjct: 131 DKSESRTDWLARPLTERQCEYAAADVFYLLPLADKLIAEVAEAGWLDAAKDDCLSLCRR 189


>gi|85712692|ref|ZP_01043738.1| Ribonuclease D [Idiomarina baltica OS145]
 gi|85693542|gb|EAQ31494.1| Ribonuclease D [Idiomarina baltica OS145]
          Length = 367

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 17/171 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPG------DGTVDIIRIAAGQKNAPNLVGML 70
           AR   + A+DTE +        L +VQL+        D  +DI   A  Q        ++
Sbjct: 9   ARLAGSFAIDTEFVRRKTYFANLGLVQLNVDGETFIIDPLIDIDLTALWQ--------LI 60

Query: 71  VDEKREKIFHYGRFDIAVLFY-TFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL-G 128
            D     + H G  DI + ++ + G + R VF T+IA+      ++  G    +++L  G
Sbjct: 61  ADPDVVTVLHAGGEDIELFYHQSNGQKPRAVFDTQIAAGFIGMGSS-LGYASLVEQLFDG 119

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           + + K+Q  +DW    LS+EQL YAA+DV +L+++     E++ +   +D+
Sbjct: 120 VTLDKSQSRTDWLKRPLSEEQLTYAAADVSYLNSMYPWLVEQVAQAHVADI 170


>gi|327484520|gb|AEA78927.1| Ribonuclease D [Vibrio cholerae LMA3894-4]
          Length = 348

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
            V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++
Sbjct: 41  FVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQD 99

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 100 QLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAA 154


>gi|50085406|ref|YP_046916.1| ribonuclease D, processes tRNA [Acinetobacter sp. ADP1]
 gi|49531382|emb|CAG69094.1| ribonuclease D, processes tRNA [Acinetobacter sp. ADP1]
          Length = 398

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ +FH    DI +++ Y     +  VF T++           HGL+ +    LK +L I
Sbjct: 90  KQNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLG-----HGLQVSYQAALKLVLDI 144

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            I K Q  SDW A  LSDEQL+YAA+DV++L  L  Q   +LQ     D     C  L
Sbjct: 145 EIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVLEDCRHL 202


>gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719]
 gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719]
          Length = 374

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE + +        +VQ+  GDG  + +      ++      +L DE+  K+ H  
Sbjct: 28  LALDTEFMRVDTSYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 85

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  SDW  
Sbjct: 86  SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 144

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             L++ Q++YAA DV HL  + L    +L    R+ L
Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWL 181


>gi|330879592|gb|EGH13741.1| ribonuclease D [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 377

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE + +        ++Q+  GDG    +       N   L  +L +    K+ H  
Sbjct: 27  VALDTEFMRVDTFYPIAALLQI--GDGQSAWLIEPLLINNWAPLSALLENPDVIKVVHAC 84

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139
             D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K +  SD
Sbjct: 85  SEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPKGETRSD 140

Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163
           W    LSD Q+ YAA D VHL  L
Sbjct: 141 WLQRPLSDTQISYAAEDAVHLAEL 164


>gi|92113585|ref|YP_573513.1| ribonuclease D [Chromohalobacter salexigens DSM 3043]
 gi|91796675|gb|ABE58814.1| ribonuclease D [Chromohalobacter salexigens DSM 3043]
          Length = 375

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 2/150 (1%)

Query: 40  CIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
            +VQL  G   V ++   A   + P L  +L      K+ H    D+ VL     V V P
Sbjct: 46  ALVQLYAGGDAVYMVDPRAVSAS-PALQALLSVSGPLKLLHASGEDLEVLESWAEVGVAP 104

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           +  T++A  L  T  +  G +  ++   G  + K +  SDW    LSD QLQYAA DVV+
Sbjct: 105 IADTQVAQSLLGTQASL-GYQRLVEHWTGDVLPKEETRSDWLQRPLSDAQLQYAALDVVY 163

Query: 160 LHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           L  +     + L R GR       C  L D
Sbjct: 164 LPRIWEAQRDALMREGRLAWLEEECARLCD 193


>gi|17229189|ref|NP_485737.1| hypothetical protein all1697 [Nostoc sp. PCC 7120]
 gi|17135517|dbj|BAB78063.1| all1697 [Nostoc sp. PCC 7120]
          Length = 302

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 15/156 (9%)

Query: 25  VDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVG-----MLVDEKREK 77
           +DTE      R  RL ++Q+   P D + D + +     + P+LV      ++V+   EK
Sbjct: 25  IDTEVADYKSRNPRLSLIQVLDDPNDMSGDRVYLL-DVLDQPDLVADFVDKIMVNTNIEK 83

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTY--TNQHGLKDNLKELLGIN-ISK 133
           +FH   FD+ +L      + R + CT +IA ++         + L+   K L   N I K
Sbjct: 84  VFHNANFDVKLLG---NKQARNITCTLEIAKKIPYYLLPVQNYQLQSLAKLLCNFNNIDK 140

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            +Q S+W    LS+EQ++YA  D ++L  +  +  E
Sbjct: 141 QEQGSNWGQRPLSEEQIEYAYLDCIYLAQIHRRLLE 176


>gi|262167934|ref|ZP_06035634.1| ribonuclease D [Vibrio cholerae RC27]
 gi|262023661|gb|EEY42362.1| ribonuclease D [Vibrio cholerae RC27]
          Length = 348

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
            V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++
Sbjct: 41  FVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQD 99

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A
Sbjct: 100 QLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAA 154


>gi|330964859|gb|EGH65119.1| ribonuclease D [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 377

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE + +        ++Q+  GDG    +       N   L  +L +    K+ H  
Sbjct: 27  VALDTEFMRVDTFYPIAALLQI--GDGQSAWLIDPLLINNWAPLSALLENPDVIKVVHAC 84

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139
             D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K +  SD
Sbjct: 85  SEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPKGETRSD 140

Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163
           W    LSD Q+ YAA D VHL  L
Sbjct: 141 WLQRPLSDTQISYAAEDAVHLAEL 164


>gi|227496242|ref|ZP_03926539.1| possible ribonuclease D [Actinomyces urogenitalis DSM 15434]
 gi|226834230|gb|EEH66613.1| possible ribonuclease D [Actinomyces urogenitalis DSM 15434]
          Length = 431

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 19/195 (9%)

Query: 4   IRVHEGDIP-----------AECAARYVDAIAVDTE-TLGLMPRRDRLCIVQLSPGDGTV 51
           +  HEG  P           A+C A     +AVD E   G    +D   I     G GT 
Sbjct: 31  VHPHEGLPPVTDSPELLSQAADCLAAGHGPVAVDAERASGFRYGQDAYLIQLRREGAGTF 90

Query: 52  DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111
            +  + AG  +A  L   L  +  E I H    D+  L    G+  R +F T++A+RL  
Sbjct: 91  LVDPVTAGDMSA--LAAAL--DGPEWILHAADQDLPCL-SALGLHPRSLFDTELAARLL- 144

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               + GL   ++E LG+ ++K   ++DWS   L    L YAA DV  L  LR+    +L
Sbjct: 145 -GRARVGLGAVVEETLGLRLAKDHAAADWSTRPLPRTWLVYAALDVELLADLRVALGAEL 203

Query: 172 QRLGRSDLATSCCNF 186
           +  G+++ A    ++
Sbjct: 204 EEAGKAEWARQEFDY 218


>gi|54025710|ref|YP_119952.1| putative RNase D [Nocardia farcinica IFM 10152]
 gi|54017218|dbj|BAD58588.1| putative RNase D [Nocardia farcinica IFM 10152]
          Length = 424

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   +F T++  RL      + GL   ++ LLG  + K  
Sbjct: 102 EWVLHSADQDLPGL-AELGLRPARLFDTELGGRLA--GFERVGLAAMVERLLGRTLRKGH 158

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++DWS   L  E L YAA DV  L  LR     +LQR G+SD A 
Sbjct: 159 GAADWSTRPLPAEWLNYAALDVELLLELRDAVAAELQRQGKSDWAA 204


>gi|119511988|ref|ZP_01631084.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414]
 gi|119463339|gb|EAW44280.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414]
          Length = 871

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 31/164 (18%)

Query: 25  VDTETLGLMPRRDRLCIVQL--SPGDGT------VDIIRIAAGQKNAPNLV-----GMLV 71
           +DTE         RL ++Q+   P D T      +D++       + P+L       +++
Sbjct: 25  LDTEIADFTTHYPRLSLIQVLADPTDSTGVSAYLLDVL-------DKPDLAEYFINQIMI 77

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLG-- 128
           +   EK+FH   FD+  L       +    CT +IA ++TR       LK  LK L    
Sbjct: 78  NPNIEKVFHNAGFDLKYLGKKLAQNIT---CTYQIARKITRDRLKVSNLK--LKTLAAEL 132

Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
              +N+   + SSDW    LSD+Q++YAA D V+L A+  +  E
Sbjct: 133 CHFVNVDADEGSSDWGKRPLSDKQVKYAAMDTVYLAAVHRKLLE 176


>gi|330466515|ref|YP_004404258.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
 gi|328809486|gb|AEB43658.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
          Length = 438

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 11/172 (6%)

Query: 13  AECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           AE  AR+      +A+D E         R  +VQL   G GT  I  +     +A  L  
Sbjct: 63  AEVVARFAAGSGPVALDAERASGYRYSQRAYLVQLRRSGAGTALIDPLPLPDLSA--LDA 120

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++ D   E + H    D+  L    G+R R +F T++A+RL      + GL    ++LLG
Sbjct: 121 VIADT--EWVLHAANQDLPCL-AELGLRPRRLFDTELAARLA--GFERVGLAALTEQLLG 175

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++ K   ++DWS+  L +  L YAA DV  L  LR     +L R G+S  A
Sbjct: 176 YSLEKHHSAADWSSRPLPESWLTYAALDVELLTDLRDALDAELTRQGKSQWA 227


>gi|254428623|ref|ZP_05042330.1| ribonuclease D [Alcanivorax sp. DG881]
 gi|196194792|gb|EDX89751.1| ribonuclease D [Alcanivorax sp. DG881]
          Length = 375

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 10/169 (5%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +DTE +       +L +VQ+  G+    +D  R+     + P L  +   ++   + H  
Sbjct: 45  LDTEFMRERTFWPQLALVQVHDGEQIRLIDTTRV-----DGPTLSPVF--QQHTLVMHAC 97

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+  +    G     +  T+IA+ L+     Q G +  ++ LLG+++ K    ++W  
Sbjct: 98  SEDLEAIATFTGQYPAAIEDTQIAAALS-GEDMQWGYQKVVQMLLGVDLPKGATRTNWLK 156

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             LSDEQL YA  DV +L  +     E+L +LGR       C  L+++A
Sbjct: 157 RPLSDEQLHYAEDDVKYLPEVAAILAERLDKLGRRAWWQEECERLLNQA 205


>gi|320103484|ref|YP_004179075.1| ribonuclease D [Isosphaera pallida ATCC 43644]
 gi|319750766|gb|ADV62526.1| ribonuclease D [Isosphaera pallida ATCC 43644]
          Length = 396

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 3/151 (1%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           LC++Q++     V +I   A    +P    +L D K E + H G  D+ +     G    
Sbjct: 45  LCLIQVATASKLV-VIDALAFSDLSPFWDAVL-DPKLEVVVHAGGEDLRICKIKTGRLPE 102

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            VF  ++A+  T   +    L +  +E+LG+ +   +  +DW    LS  Q+ YA  DV 
Sbjct: 103 RVFDVQLAAGFT-GLSYPLSLTNLAREVLGVQLVGGESRTDWRKRPLSVAQMNYALEDVR 161

Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           HL  L      KL+R+GR D         +D
Sbjct: 162 HLLDLADALRSKLERMGRLDWVIEETRAFLD 192


>gi|115767336|ref|XP_001198019.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus
           purpuratus]
 gi|115963545|ref|XP_001176068.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus
           purpuratus]
          Length = 228

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 20/195 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVD 72
           + R    I +D E + L   +  L +VQ+S  DG     D  +     K   +L  +L  
Sbjct: 25  STRQTVVIGLDCEGVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKILEH 84

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127
               K+ H  + D   L + FGV+++ VF T IA R      N++     G K  L ELL
Sbjct: 85  NSILKVIHDCKSDTYGLHHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFK-ALCELL 143

Query: 128 GIN--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHL-HALRLQFTEKLQRLGRS 177
           G          + K  ++ D W    L++E + YAASD + L  ++ L+F   L  L R 
Sbjct: 144 GEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNGMLTPLWR- 202

Query: 178 DLATSCCNFLMDRAE 192
           DL T  C   M+  +
Sbjct: 203 DLFTWSCKDTMESIQ 217


>gi|320093825|ref|ZP_08025670.1| ribonuclease D [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979258|gb|EFW10756.1| ribonuclease D [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 412

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
               G+R   +F T+IA+RL      + GL    + +LG+ + K  Q++DWS   L  + 
Sbjct: 113 LRAVGLRCPELFDTEIAARLV--GMRRFGLASVAESVLGLALVKDHQAADWSVRPLPKDW 170

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           L+YAA DV  L  L  + + +L  LGR + AT
Sbjct: 171 LRYAALDVELLTELHRRLSTRLHDLGRWEWAT 202


>gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA]
 gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei]
          Length = 1808

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 12/183 (6%)

Query: 24   AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81
             +D ET GL    +++ ++Q+S  +  V I  +     N     L  +L DE   KI   
Sbjct: 1260 GLDMETTGLEVFGEKIRLIQISVENYPVIIYDMFNITNNNILDGLRKILNDENIVKIIQN 1319

Query: 82   GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139
            G+FD   L Y     +  +F T IAS+L     N +G K N  +++ L + + K QQ+S 
Sbjct: 1320 GKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQQQNSV 1378

Query: 140  WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR---SDLATSC----CNFLMDRAE 192
            W+   L++ QL YAA D   L  L  + +E+++       +D+   C    C+  ++  +
Sbjct: 1379 WNNSLLNNNQLFYAARDSSCLLKLYKKLSEQIKAENMQIVNDIENKCILPICDMELNGIK 1438

Query: 193  LDL 195
            +DL
Sbjct: 1439 VDL 1441


>gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 532

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 9/139 (6%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85
           DTET  L  R  ++ ++  S G   V +   +  ++    L  +L D+   K+FH  +FD
Sbjct: 10  DTETDSLDFRTGKIKLIAFSKGLNEV-VTTTSVDER----LKSILNDKNIIKVFHNAKFD 64

Query: 86  IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD-WSADD 144
           +   F + G RV    CT + +++      +  LK   K+ L +++ K+ Q SD W   +
Sbjct: 65  VG-FFQSKGYRVNNYHCTLLMAQVLGE--EKLSLKALAKKYLDVDMDKSMQHSDNWQETE 121

Query: 145 LSDEQLQYAASDVVHLHAL 163
           ++ E + YA  DV H  AL
Sbjct: 122 ITQEHIDYAVKDVEHTRAL 140


>gi|87122723|ref|ZP_01078598.1| Ribonuclease D [Marinomonas sp. MED121]
 gi|86162020|gb|EAQ63310.1| Ribonuclease D [Marinomonas sp. MED121]
          Length = 387

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVDTE +          ++Q+S G+  V +  +A    N   L+ ++ ++   K+FH  
Sbjct: 39  IAVDTEFIRRTTFYPITGLIQISEGEHAVLVDPLAIS--NWQPLIDLMTNQSVVKVFHAC 96

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSD 139
             D+ V     GV   P + T++A      Y +       +K +L    I I+K +  SD
Sbjct: 97  SEDLEVFDRLLGVVPSPFYDTQVAE----AYVSGQWSLSYVKLILAYKNIEIAKDETRSD 152

Query: 140 WSADDLSDEQLQYAASDVVHL 160
           W    L++ Q +YAA DV+HL
Sbjct: 153 WLKRPLTEAQKRYAALDVIHL 173


>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 867

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDI--IRIAAGQKNAPNLVGMLVDE 73
           R V+  AVD E       +   C++Q+S    D  VD   +RI  G    P L  +  D 
Sbjct: 273 RGVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIG----PYLREIFKDP 328

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K++KI H    DI  L   FG+ V  +F T  ASR+     N   L+  L+   G+  +K
Sbjct: 329 KKKKIMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLGRN--SLEFLLQHFCGVTANK 386

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             Q++DW    L +E  +YA  D  +L  +      +L+R+ + D  T
Sbjct: 387 EYQNADWRIRPLPEEMTRYAREDTHYLLYIYDVMRLELERMAKDDEHT 434


>gi|213022814|ref|ZP_03337261.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 182

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQH 117
           G  +   L  +L D    K  H G  D+ V    FG    P+  T+I A+   R  +   
Sbjct: 22  GISDWSPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFCGRPLS--W 79

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           G    ++E  G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G  
Sbjct: 80  GFASMVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWL 139

Query: 178 DLATSCCNFLMDR 190
             A   C  +  R
Sbjct: 140 PAALDECRLMQQR 152


>gi|307107266|gb|EFN55509.1| hypothetical protein CHLNCDRAFT_133914 [Chlorella variabilis]
          Length = 1092

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 58/138 (42%), Gaps = 2/138 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVD E       +   C++QLS     + I  +A      P L  +  D    K+ H  
Sbjct: 270 LAVDLEAHSYRSFQGFCCLMQLSTRSEDLVIDTLALRAHVGPALAPIFADPGVVKVLHGA 329

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+A L   FG+ +  +F T  A+R+       HGL   L    G    K  Q +DW  
Sbjct: 330 DSDVAWLQRDFGLFLANLFDTGQAARVLGM--RGHGLAHLLDFYCGFKADKRFQLADWRV 387

Query: 143 DDLSDEQLQYAASDVVHL 160
             L+ E L YA SD  HL
Sbjct: 388 RPLTPEMLHYARSDTHHL 405


>gi|238919524|ref|YP_002933039.1| ribonuclease D [Edwardsiella ictaluri 93-146]
 gi|238869093|gb|ACR68804.1| ribonuclease D, putative [Edwardsiella ictaluri 93-146]
          Length = 371

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 9/171 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IA+DTE +       +L +VQL  G+    +D + I+  Q      V +L + +  K+ H
Sbjct: 26  IALDTEFVRTRTYYPQLGLVQLYDGEMLSLIDPLTISDWQP----FVDLLRNPQVVKLLH 81

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSSD 139
               D+ V  + F    +P+  T+I +  + R  ++  G    +   L +++ K++  +D
Sbjct: 82  ASSEDLEVFLHDFQTLPQPLIDTQILAAFSGRPLSS--GFAAMVSAYLQVDLDKSESRTD 139

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           W A  LS+ Q  YAA+DV +L  +  +   +++  G    A   C  L  R
Sbjct: 140 WLARPLSERQCDYAAADVYYLLPMAHKLLAEVEACGWLPSALDECQALCRR 190


>gi|229820453|ref|YP_002881979.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333]
 gi|229566366|gb|ACQ80217.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333]
          Length = 416

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 80/171 (46%), Gaps = 14/171 (8%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGM--- 69
           E  AR   A+AVD E         R  +VQ+   G GT  I  IA      P+L G+   
Sbjct: 29  EAVARADGAVAVDAERASGYRYGQRAYLVQIRRLGAGTALIDPIAC-----PDLSGLSAA 83

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D   E + H    D+  L    G+  R VF T++A RL      + GL   +++ LG+
Sbjct: 84  LGDA--EWVLHAANQDLPCLA-EVGLVPRHVFDTELAGRLL--GRERVGLAAIVEQELGL 138

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++K   + DWS   L ++ L+YAA DV  L  LR      L R G+++ A
Sbjct: 139 TLAKEHSAVDWSTRPLREDWLRYAALDVEVLVELRDALERDLVRAGKAEWA 189


>gi|115661808|ref|XP_001202523.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
 gi|115689950|ref|XP_001201160.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
          Length = 234

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 20/195 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVD 72
           + R    I +D E + L   +  L +VQ+S  DG     D  +     K   +L  +L  
Sbjct: 31  STRQTVVIGLDCEGVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKILEH 90

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127
               K+ H  + D   L + FGV+++ VF T IA R      N++     G K  L ELL
Sbjct: 91  NSILKVIHDCKSDTYGLHHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFK-ALCELL 149

Query: 128 GIN--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHL-HALRLQFTEKLQRLGRS 177
           G          + K  ++ D W    L++E + YAASD + L  ++ L+F   L  L R 
Sbjct: 150 GEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNGMLTPLWR- 208

Query: 178 DLATSCCNFLMDRAE 192
           DL T  C   M+  +
Sbjct: 209 DLFTWSCKDTMESIQ 223


>gi|315604318|ref|ZP_07879384.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314024|gb|EFU62075.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 414

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           +F T+IA+RL      + GL    +++LG+ + K  Q+SDWS   L  E L+YAA DV  
Sbjct: 123 LFDTEIAARLV--GLERFGLAAVAEQVLGLGLVKDHQASDWSLRPLPPEWLRYAALDVEL 180

Query: 160 LHALRLQFTEKLQRLGRSDLA 180
           L  L  + +++L ++GR + A
Sbjct: 181 LTELYYRLSKRLDQMGRWEWA 201


>gi|238063529|ref|ZP_04608238.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149]
 gi|237885340|gb|EEP74168.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149]
          Length = 442

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R R +F T++A+RL      + GL    ++LLG ++ K  
Sbjct: 126 EWVLHAASQDLPCL-AEVGLRPRRLFDTELAARLA--GFERVGLAALTEQLLGFSLEKHH 182

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS+  L +  L YAA DV  L  LR     +L R G+S  A
Sbjct: 183 SAADWSSRPLPESWLTYAALDVELLTDLRDALDAELARQGKSAWA 227


>gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2]
          Length = 380

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE + +        +VQ+  GDG  + +      ++      +L DE+  K+ H  
Sbjct: 34  LALDTEFMRVDTFYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 91

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  SDW  
Sbjct: 92  SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 150

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             L++ Q++YAA DV HL  + L    +L    R+ L
Sbjct: 151 RPLTEMQMRYAADDVQHLAQVYLALDTRLSEEKRAWL 187


>gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016]
 gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016]
          Length = 374

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE + +        +VQ+  GDG  + +      ++      +L DE+  K+ H  
Sbjct: 28  LALDTEFMRVDTFYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 85

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  SDW  
Sbjct: 86  SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 144

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             L++ Q++YAA DV HL  + L    +L    R+ L
Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWL 181


>gi|146306804|ref|YP_001187269.1| ribonuclease D [Pseudomonas mendocina ymp]
 gi|145575005|gb|ABP84537.1| ribonuclease D [Pseudomonas mendocina ymp]
          Length = 377

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 10/161 (6%)

Query: 15  CAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           CAA R +  +A+DTE + +        ++Q+S GD    I  +         L  +L  +
Sbjct: 18  CAAWRALPFVALDTEFMRVDTFYPIAGLLQVSGGDKAYLIDPLCIDDWRP--LAELLQAQ 75

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130
              K+ H    D+ V     G    P+F T++A+     Y N     G    ++ LLGI 
Sbjct: 76  TVVKVLHSCSEDLEVFLRLTGSLPVPLFDTQVAA----GYLNLGFSMGYSRLVQTLLGIE 131

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           + K +  SDW    LS  Q+ YAA DV+HL  +    T++L
Sbjct: 132 LPKGETRSDWLQRPLSATQISYAAEDVLHLVEVYQALTQRL 172


>gi|296117768|ref|ZP_06836352.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
 gi|295969499|gb|EFG82740.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
          Length = 411

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 5   RVHEGDIPA--------ECAARYV----DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVD 52
           RV EG IP         E AAR +      IA+DTE        DR  ++QL   D  + 
Sbjct: 6   RVPEGGIPTVVSTRAGVEDAARILAQGSGPIAIDTERASSFRYDDRAFLIQLRRADTPIF 65

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           ++     + +   ++  +V+ ++  + H    D+  L +  G+    +F T++A RL   
Sbjct: 66  LVAPEGIRDDVREVLAPVVNGEK-WVVHAAVTDLTSLAW-LGLYPGSLFDTEVAGRLLGI 123

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                 L    +E LGI + K   ++DWS   LS  QL YAA DV  L  L  +   +L+
Sbjct: 124 --QNPNLASVTEEFLGIELDKGYGATDWSRFPLSKAQLIYAALDVDTLLELADEMAYELE 181

Query: 173 RLGRSDLA 180
           +  +++ A
Sbjct: 182 QEDKTEWA 189


>gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
 gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192]
 gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192]
 gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
          Length = 374

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE + +        +VQ+  GDG  + +      ++      +L DE+  K+ H  
Sbjct: 28  LALDTEFMRVDTFYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 85

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  SDW  
Sbjct: 86  SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 144

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             L++ Q++YAA DV HL  + L    +L    R+ L
Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWL 181


>gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1]
 gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 374

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE + +        +VQ+  GDG  + +      ++      +L DE+  K+ H  
Sbjct: 28  LALDTEFMRVDTFYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 85

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  SDW  
Sbjct: 86  SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 144

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             L++ Q++YAA DV HL  + L    +L    R+ L
Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWL 181


>gi|331019018|gb|EGH99074.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 377

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDN 122
           L  +L +    K+ H    D+ VL    G    P+F T++A+     Y N     G    
Sbjct: 68  LSALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRL 123

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           ++E+L I++ K +  SDW    LSD Q+ YAA D VHL  L
Sbjct: 124 VQEVLNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAEL 164


>gi|322514433|ref|ZP_08067476.1| ribonuclease D [Actinobacillus ureae ATCC 25976]
 gi|322119681|gb|EFX91739.1| ribonuclease D [Actinobacillus ureae ATCC 25976]
          Length = 371

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A+ +DTE + +     +L ++QL  G+  V +I        AP  + +L +++  K+ H 
Sbjct: 28  AVTLDTEFIRIRTYYPKLGLIQLFDGE-QVSLIDPTKIDDFAP-FIELLANQQVVKVLHA 85

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+ V  + F     P+  T+I +       +  G    +   L I + K    +DW 
Sbjct: 86  CGEDLEVFQHRFKQLPTPLVDTQIMADFAGIGVSM-GFAKLVAHYLQIELDKGASRTDWL 144

Query: 142 ADDLSDEQLQYAASDVVHL 160
           A  LS+EQLQYAA+DV +L
Sbjct: 145 ARPLSEEQLQYAAADVWYL 163


>gi|33152538|ref|NP_873891.1| ribonuclease D [Haemophilus ducreyi 35000HP]
 gi|33148762|gb|AAP96280.1| ribonuclease D [Haemophilus ducreyi 35000HP]
          Length = 373

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 7/171 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           AIA+DTE +       +  ++QL  G+ T  +D   I+    +    + +L +    K+ 
Sbjct: 28  AIALDTEFIRTRSYYPKFGLIQLFDGEQTSLIDPTTIS----DFLPFIDLLANPNIVKVL 83

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+ +  + F   + P+  T+I +  +    +  G    +   L I + K    +D
Sbjct: 84  HACSEDLEIFQHQFNQALTPLIDTQIMAAFSGLGLS-IGFAKLVNHYLNIELDKGASRTD 142

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           W A  L++ QLQYAA+DV +L  +  +   +L +    +     C  L+++
Sbjct: 143 WLARPLTETQLQYAAADVYYLLPIYQKLQAELAQTNWQEAVNQECQLLVNK 193


>gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1]
 gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1]
          Length = 374

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE + +        +VQ+  GDG  + +      ++      +L DE+  K+ H  
Sbjct: 28  LALDTEFMRVDTFYPAAGLVQV--GDGRQEWLIDPLLIQDWSPFAELLEDERVVKVLHAC 85

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  SDW  
Sbjct: 86  SEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETRSDWLQ 144

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             L++ Q++YAA DV HL  + L    +L    R+ L
Sbjct: 145 RPLTEMQMRYAADDVQHLAQVYLALDTRLSEEKRAWL 181


>gi|223041446|ref|ZP_03611649.1| ribonuclease D [Actinobacillus minor 202]
 gi|223017704|gb|EEF16111.1| ribonuclease D [Actinobacillus minor 202]
          Length = 373

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           AIA+DTE + +     +L ++QL  G+  V +I  ++ +  +P  + +L +    K+ H 
Sbjct: 28  AIALDTEFIRIRSFYPQLGLIQLFDGE-QVSLIDPSSIEDFSP-FIALLANPDVIKVLHA 85

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              D+ V  Y F     P+  T++ A  L R  +   G    ++  L I + K    +DW
Sbjct: 86  CSEDLEVFEYRFKQLPTPLVDTQVVAGFLNRGISI--GFAKLVEHYLHIELDKGASRTDW 143

Query: 141 SADDLSDEQLQYAASDVVHL----HALRLQFTEKLQRLGRSDLATSCCNFL 187
            A  LS+ Q QYAA+DV +L    H ++ + +E   R  ++ +   C  FL
Sbjct: 144 LARPLSEIQCQYAAADVFYLLPVYHKMQKELSEN--RWQKA-VEEECQKFL 191


>gi|28871074|ref|NP_793693.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28854324|gb|AAO57388.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 377

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LSD Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSDTQISYAAEDAVHLAEL 164


>gi|41408900|ref|NP_961736.1| hypothetical protein MAP2802 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397259|gb|AAS05119.1| hypothetical protein MAP_2802 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 428

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 14  ECAARYVD----AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           E AAR +D      AVD E        +R  ++Q+   G GTV I  ++ G      L  
Sbjct: 37  EDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRP 96

Query: 69  ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +  V    E I H    D+  L    G+R   ++ T++A RL      +  L   ++ LL
Sbjct: 97  VAEVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFERVNLATMVERLL 153

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           G  ++K   ++DWS   L  E L YAA DV  L  LR    + L   G++D A    ++L
Sbjct: 154 GFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGKTDWAAQEFDYL 213

Query: 188 MD 189
            +
Sbjct: 214 RE 215


>gi|213969693|ref|ZP_03397828.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
 gi|301383544|ref|ZP_07231962.1| ribonuclease D [Pseudomonas syringae pv. tomato Max13]
 gi|302062110|ref|ZP_07253651.1| ribonuclease D [Pseudomonas syringae pv. tomato K40]
 gi|302130100|ref|ZP_07256090.1| ribonuclease D [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213925501|gb|EEB59061.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
          Length = 377

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LSD Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSDTQISYAAEDAVHLAEL 164


>gi|184201057|ref|YP_001855264.1| putative ribonuclease D [Kocuria rhizophila DC2201]
 gi|183581287|dbj|BAG29758.1| putative ribonuclease D [Kocuria rhizophila DC2201]
          Length = 420

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 74/174 (42%), Gaps = 18/174 (10%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML- 70
           AE  A     +AVDTE         R  +VQL   G GTV I          P  VG L 
Sbjct: 37  AEQLAAAHGPVAVDTERASGFRYGQRAFLVQLRREGAGTVLI---------DPEAVGSLA 87

Query: 71  -VDEKR---EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
            VDE     E + H    D+  L     +    +F T++  RL      + GL    +EL
Sbjct: 88  EVDEALRGVEWVLHAATQDMPCL-AELDMHPDELFDTELGGRLL--GLRKVGLASMTEEL 144

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           LG  +SK   + DWS   L  + L YAA DV  L  LR    E+L R G+ D A
Sbjct: 145 LGFTLSKEHSAVDWSQRPLPVDWLNYAALDVEVLVQLRWATEERLARAGKLDWA 198


>gi|269126003|ref|YP_003299373.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
 gi|268310961|gb|ACY97335.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
          Length = 437

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 14/158 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78
           +AVD E         R  ++QL   G GT  I  IA      P+L G+   L D   E +
Sbjct: 70  VAVDAERASGYRYGQRAYLIQLRRQGAGTALIDPIAC-----PDLSGLDAALADA--EMV 122

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L    G+R R +F T++A RL      + GL   ++ +LG  + K   + 
Sbjct: 123 LHAANQDLPCL-AEVGLRPRRLFDTELAGRLL--GHPKVGLGSMVENVLGFVLEKGHSAV 179

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           DWS   L ++ L+YAA DV  L  LR     +L+R G+
Sbjct: 180 DWSTRPLPEDWLRYAALDVELLIELRDALHAELERAGK 217


>gi|239983036|ref|ZP_04705560.1| ribonuclease D [Streptomyces albus J1074]
 gi|291454868|ref|ZP_06594258.1| ribonuclease D [Streptomyces albus J1074]
 gi|291357817|gb|EFE84719.1| ribonuclease D [Streptomyces albus J1074]
          Length = 348

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 13/173 (7%)

Query: 13  AECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           AE  ARY      +AVD E         R  +VQL   G GT  I  +A      P+L G
Sbjct: 56  AETVARYAAGSGPLAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC-----PDLSG 110

Query: 69  M-LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +  V E  E + H    D+  L    G+  + +F T++A RL      + GL   ++ +L
Sbjct: 111 LGEVVEDAEWLLHAATQDLPCL-RDIGMVPQRLFDTELAGRLA--GFARVGLGAMVENVL 167

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           G ++ K   + DWS   L +  L+YAA DV  L  LR    E+L   G+ D A
Sbjct: 168 GYSLEKGHSAVDWSTRPLPEPWLRYAALDVELLADLRDALEEELAGQGKLDWA 220


>gi|227875468|ref|ZP_03993609.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
 gi|227844022|gb|EEJ54190.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
          Length = 397

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 6/175 (3%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           E  A    ++A+DTE  G         +VQL   D    +I   A     P  +G  +  
Sbjct: 24  ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEP--LGAAIG- 80

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K E I H    D+  L    G+R + +F T++A++L      + GL    +++LGI + K
Sbjct: 81  KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLNF--ERFGLGSLTEQVLGIMLEK 137

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
              ++DWS   L    L+YAA DV  L  LR     +L   G+ D A      L+
Sbjct: 138 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 192


>gi|89094008|ref|ZP_01166952.1| ribonuclease D [Oceanospirillum sp. MED92]
 gi|89081682|gb|EAR60910.1| ribonuclease D [Oceanospirillum sp. MED92]
          Length = 397

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           +L  +  DE   K+ H    D+ +     G    P+F T+IA+ L   +    GL+  L+
Sbjct: 81  SLSTLFKDEGVVKVMHAATEDLELFHKEIGALPVPLFDTQIAAALI-NWGFSMGLQRMLE 139

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL-RLQFTEKLQRLGRSDLATSC 183
             L + + K + +S+W    L+  Q +YAA DV +L A+  +Q  E L R G        
Sbjct: 140 SCLSVQLEKHETTSNWLQRPLTSSQEKYAALDVAYLPAIYEIQRQELLSR-GHFHWVEQE 198

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
           C+ ++  A +D     +VD FS+
Sbjct: 199 CSAMLADAAID-----DVDGFSY 216


>gi|323499349|ref|ZP_08104325.1| ribonuclease D [Vibrio sinaloensis DSM 21326]
 gi|323315534|gb|EGA68569.1| ribonuclease D [Vibrio sinaloensis DSM 21326]
          Length = 371

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 16/194 (8%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQ 60
           I     ++ A C  AR  D + +DTE +       +L ++QL  G+    +D   +    
Sbjct: 5   IVTQTSELVAVCKQARESDVVMLDTEFVRTRTFYPQLGLIQLFDGEHLSLIDPTEL---- 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           ++    V +L D    K+ H    D+ V   +FG    P+  T++ +         HGL 
Sbjct: 61  EDMTAFVQLLQDTSVLKVLHACGEDLEVFHNSFGCLPYPMVDTQLMAAFL-----GHGLS 115

Query: 121 DNLKEL----LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                L    L + + K++  +DW A  L+D+QL YAA+DV +L  L  +    +   G 
Sbjct: 116 TGFAALVDHYLQVELDKSESRTDWLARPLTDKQLDYAAADVFYLWPLYEKLLAAVTEAGW 175

Query: 177 SDLATSCCNFLMDR 190
            + A    + L  +
Sbjct: 176 WEAAQQESDLLASK 189


>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
          Length = 576

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 9/133 (6%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           +DTET+      +++ +VQL   +    +     G      L  +LVD  +  + H  ++
Sbjct: 27  LDTETVS-----EKIRLVQLGNNEDVFIVDLFETGSYGVDFLKDLLVD--KGIVGHNLKY 79

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           D+  L Y +G+    VF T IAS+L     ++H L+      LG  + K+ Q S+W    
Sbjct: 80  DLKFL-YRYGIEPYAVFDTMIASQLLGE-LDRHSLQKVAMHYLGEVLDKSLQMSNWGRAV 137

Query: 145 LSDEQLQYAASDV 157
           LS EQL+YAA DV
Sbjct: 138 LSKEQLEYAALDV 150


>gi|307544648|ref|YP_003897127.1| ribonuclease D [Halomonas elongata DSM 2581]
 gi|307216672|emb|CBV41942.1| ribonuclease D [Halomonas elongata DSM 2581]
          Length = 395

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L+ E   K+ H    D+ V  +  GV V P+  T+IA  L        G +  ++  +G 
Sbjct: 91  LLGEGPVKLLHASSEDLEVFLHWAGVTVSPLVDTQIAQALL-GEVPAMGYQKLVEFWVGE 149

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K +  S+W    LS+ Q  YAA DV++L  +     + L+R GR       C  L+D
Sbjct: 150 TLPKDETRSNWLERPLSETQTTYAALDVIYLLEVWQVQRDALERYGRLGWLEEECRKLVD 209

Query: 190 RAELD 194
           +A  D
Sbjct: 210 QAARD 214


>gi|118463563|ref|YP_882753.1| ribonuclease D [Mycobacterium avium 104]
 gi|118164850|gb|ABK65747.1| ribonuclease D [Mycobacterium avium 104]
          Length = 428

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 14  ECAARYVD----AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           E AAR +D      AVD E        +R  ++Q+   G GTV I  ++ G      L  
Sbjct: 37  EDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRP 96

Query: 69  ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +  V    E I H    D+  L    G+R   ++ T++A RL      +  L   ++ LL
Sbjct: 97  VAEVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFERVNLATMVERLL 153

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           G  ++K   ++DWS   L  E L YAA DV  L  LR    + L   G++D A    ++L
Sbjct: 154 GFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGKTDWAAQEFDYL 213

Query: 188 MD 189
            +
Sbjct: 214 RE 215


>gi|239946745|ref|ZP_04698498.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921021|gb|EER21045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 281

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 7/169 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE         +L I+Q+   +  G +D    A    +      +L D    KIFH
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +  F +    VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W
Sbjct: 79  APREDLEIFYNLFKILPSNVFDIQIAANIC-GFGKQLSYNDLCYKLIGITIDKTHQKSNW 137

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
               ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D
Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLD 186


>gi|306818778|ref|ZP_07452500.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
 gi|304648464|gb|EFM45767.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
          Length = 422

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 6/175 (3%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           E  A    ++A+DTE  G         +VQL   D    +I   A     P  +G  +  
Sbjct: 49  ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEP--LGTAIG- 105

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K E I H    D+  L    G+R + +F T++A++L      + GL    +++LGI + K
Sbjct: 106 KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLNF--ERFGLGSLTEQVLGIMLEK 162

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
              ++DWS   L    L+YAA DV  L  LR     +L   G+ D A      L+
Sbjct: 163 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 217


>gi|114562909|ref|YP_750422.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
 gi|114334202|gb|ABI71584.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
          Length = 370

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 7/151 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +       +L ++Q   G  T+ +I   A    +P    +L D+   K+ H  
Sbjct: 26  LVLDTEFVRTRTYYAKLGLIQAYDGK-TLALIDPVAITDLSP-FWQLLTDQNIVKLVHSC 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISKAQQSSDW 140
             D+ V  +    +  P+F ++IA+         HGL     +   L + I K +  +DW
Sbjct: 84  SEDLEVFAHYGECQPSPLFDSQIAASFAGL---GHGLGYAKLVDACLQVEIDKGESRTDW 140

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               LSD QLQYAA+DV +L+ L  Q  +KL
Sbjct: 141 MNRPLSDAQLQYAANDVFYLYQLYPQLQQKL 171


>gi|110834629|ref|YP_693488.1| ribonuclease D [Alcanivorax borkumensis SK2]
 gi|110647740|emb|CAL17216.1| ribonuclease D [Alcanivorax borkumensis SK2]
          Length = 357

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 9/180 (5%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           +DTE +       +L +VQ+  G   V I  I   + + P L+ +   +    + H    
Sbjct: 27  LDTEFMRERTFWPQLALVQVHDG---VRIRLIDTTEVDGPTLLPVF--QNHTLVMHACSE 81

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           D+  +    G     +  T+IA+ L+     Q G +  ++ LLG+++ K    ++W    
Sbjct: 82  DLEAIATFTGQYPAAIEDTQIAAALS-GEDMQWGYQKVVQMLLGVDLPKGATRTNWLKRP 140

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWENV 201
           LSDEQL YA  DV +L  +     E+L  LGR       C  L+ +A   +L    W NV
Sbjct: 141 LSDEQLHYAEDDVKYLPEVAGILAERLDGLGRRAWWEEECARLLKQARSQVLPQDAWRNV 200


>gi|255319565|ref|ZP_05360778.1| ribonuclease D, processes tRNA [Acinetobacter radioresistens SK82]
 gi|262379863|ref|ZP_06073019.1| ribonuclease D [Acinetobacter radioresistens SH164]
 gi|255303363|gb|EET82567.1| ribonuclease D, processes tRNA [Acinetobacter radioresistens SK82]
 gi|262299320|gb|EEY87233.1| ribonuclease D [Acinetobacter radioresistens SH164]
          Length = 380

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 4/115 (3%)

Query: 75  REKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIA-SRLTRTYTNQHGLKDNLKELLGINIS 132
           ++ IFH    DI ++++  G   +  VF T++  S L +    Q   ++ LK +L I+I 
Sbjct: 72  QQNIFHACSEDIDLIYHYAGPYSLSNVFDTQVGLSFLGQGL--QVSYQNALKLVLDIDIE 129

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           K Q  SDW A  L+DEQL YAA+DV++L  L  Q   +L++    +     C  L
Sbjct: 130 KDQTRSDWLARPLTDEQLHYAANDVLYLGQLAEQIKTELKQKNLYECVLEDCKHL 184


>gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
 gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
          Length = 352

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PG-DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           I +DTE   L    ++LC++Q+S PG D  +D +   + Q       G      +E I H
Sbjct: 24  IPIDTEADSLHCYFEKLCLIQISVPGHDLLIDPLAGISLQPLFEAFAG------KELIIH 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+ +L         PVF T IA+RL      +  L   +K    + ++KA Q ++W
Sbjct: 78  GADYDLRLLRRVGFTVTAPVFDTMIAARLC--GIEEFSLAALIKRYFDVALTKASQKANW 135

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +   LS +   YA  D  +L  +      +L RL R +     C+
Sbjct: 136 ARRPLSPQMADYAVKDTHYLLEIAGILEAELTRLDRMEWFRQSCD 180


>gi|269977281|ref|ZP_06184254.1| ribonuclease D [Mobiluncus mulieris 28-1]
 gi|307701108|ref|ZP_07638133.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
 gi|269934584|gb|EEZ91145.1| ribonuclease D [Mobiluncus mulieris 28-1]
 gi|307614103|gb|EFN93347.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
          Length = 422

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 6/175 (3%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           E  A    ++A+DTE  G         +VQL   D    +I   A     P  +G  +  
Sbjct: 49  ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEP--LGAAIG- 105

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K E I H    D+  L    G+R + +F T++A++L      + GL    +++LGI + K
Sbjct: 106 KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLNF--ERFGLGSLTEQVLGIMLEK 162

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
              ++DWS   L    L+YAA DV  L  LR     +L   G+ D A      L+
Sbjct: 163 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 217


>gi|118618645|ref|YP_906977.1| hypothetical protein MUL_3315 [Mycobacterium ulcerans Agy99]
 gi|183982048|ref|YP_001850339.1| hypothetical protein MMAR_2035 [Mycobacterium marinum M]
 gi|118570755|gb|ABL05506.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
 gi|183175374|gb|ACC40484.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 435

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 9/180 (5%)

Query: 14  ECAARYVD----AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           E AA  +D      AVD E        +R  ++Q+   G GTV I  ++ G      L  
Sbjct: 41  EAAATLLDRGSGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGGDPLTVLQP 100

Query: 69  ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +  V  K E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LL
Sbjct: 101 LAEVLAKDEWILHSADQDLPCL-AEVGMRPSALYDTELAGRLA--GYDRVNLATMVERLL 157

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           G+ + K   ++DWS   L  + L YAA DV  L  LR   +  L   G+SD A     +L
Sbjct: 158 GMGLVKGHGAADWSKRPLPSDWLNYAALDVELLIELRSAISGVLAEQGKSDWAAQEFEYL 217


>gi|148272845|ref|YP_001222406.1| putative ribonuclease D [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830775|emb|CAN01715.1| putative ribonuclease D [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 496

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+A L    G+  + +F T++ASRL      + GL   ++ELLGI+++K  
Sbjct: 175 EWVLHAASQDLACL-REVGLDPQRIFDTELASRLL--GLPRVGLGTVVEELLGIHLAKEH 231

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L    L YAA DV  L  +R +   +L+  G++ +A
Sbjct: 232 SAADWSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTGIA 276


>gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum]
          Length = 860

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 9/153 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVD E           C++Q+S  D T  II   A   +   L  +  D K  K+FH  
Sbjct: 280 IAVDLEHHSYRSFLGITCLIQISTLD-TDYIIDALALHDHLSILNEVFTDPKIVKVFHGS 338

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG---LKDNLKELLGINISKAQQSSD 139
             D+  L   FGV V  +F T +A+RL      QHG   L   L+  + IN +K  Q +D
Sbjct: 339 DSDLMWLQRDFGVYVVNLFDTGVAARLL-----QHGRFSLSYLLQRYVNINPNKKYQLAD 393

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           W    L +E ++YA +D  +L  +  +   +LQ
Sbjct: 394 WRIRPLPNELIEYARTDTHYLLHIASRMCRELQ 426


>gi|290475404|ref|YP_003468292.1| RNase D, processes tRNA [Xenorhabdus bovienii SS-2004]
 gi|289174725|emb|CBJ81524.1| RNase D, processes tRNA precursor [Xenorhabdus bovienii SS-2004]
          Length = 385

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IA+DTE +       +L ++QL  G+    +D + I+  Q        +L D    K  H
Sbjct: 35  IALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLDISEWQP----FRELLTDRDVLKFIH 90

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
            G  D+ V + +F     P+  T++ +     +    G    + + L + + K++  +DW
Sbjct: 91  AGSEDLEVFWNSFQCLPTPMIDTQVLAAFI-GHPMSCGFATLVAQYLHVELDKSESRTDW 149

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
            A  LS++Q +YAA+DV +L  L
Sbjct: 150 LARPLSEKQCEYAAADVYYLLPL 172


>gi|187735079|ref|YP_001877191.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
 gi|187425131|gb|ACD04410.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
          Length = 352

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDE 73
           AA+    + +D E   L   ++++C++Q +   G+  +D + I   +   P    +   +
Sbjct: 16  AAQPAGRVVLDLEADSLHRYQEKICLIQYADETGSCLIDPLSI---EDMGPFYNWL---K 69

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + E   H   +D+++    +      ++ T+ A+RL      Q GL   ++   GI +SK
Sbjct: 70  ETEVWMHGADYDMSLFQNAWETLPAMIWDTQTAARLLGF--RQFGLAALVEHFHGITLSK 127

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           + Q +DW+   LS   + YA +DV ++  +  + T  L++ GR       C   M+RA
Sbjct: 128 SSQKADWARRPLSPTMVTYALNDVNYMLDMADKLTAALRKKGRMGWFEEICRHSMERA 185


>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus]
          Length = 574

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 70/143 (48%), Gaps = 16/143 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTET G     +R+ +VQL   + T  +I +       P  +  L+ EK   I H  
Sbjct: 25  LYLDTETTG-----NRIRLVQLGDDEKTY-VIDLYEIHDITP--LRELISEKG-VIGHNL 75

Query: 83  RFDIAVLFYTFGVRVRPV--FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
           +FD   L Y    ++ P+  F T IAS L      +H L   +  LLG  + K+ Q SDW
Sbjct: 76  KFD---LHYLMNYQIEPLATFDTMIASFLLGY--ERHSLNHLVGNLLGYTLDKSYQLSDW 130

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
            A  LSD QL+YAA DV  L  L
Sbjct: 131 GAPVLSDAQLKYAAKDVDVLREL 153


>gi|24374123|ref|NP_718166.1| ribonuclease D [Shewanella oneidensis MR-1]
 gi|24348616|gb|AAN55610.1|AE015699_8 ribonuclease D [Shewanella oneidensis MR-1]
          Length = 367

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 77  KIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISK 133
           K+ H    D+ V F  +G R   P+F ++IA+ L       HGL     ++  LG  I K
Sbjct: 76  KLVHSCSEDLEV-FAHYGQRQPTPLFDSQIAASLCGM---GHGLGYAKLVETCLGEVIDK 131

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            +  +DW    L+D QL YAA+DV++L+ L  Q  EKLQ   R D
Sbjct: 132 GESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQDRLD 176


>gi|115665303|ref|XP_001177704.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
 gi|115976409|ref|XP_001186302.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
          Length = 579

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 18/160 (11%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVDEK 74
           R    I +D E +GL      L +VQ+S  DG     D  +     K   +L  +L    
Sbjct: 387 RETVVIGLDCEGVGLGRAGGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKILEHNS 446

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLKELLGI 129
             K+ H  + D   L++ FGV+++ VF T IA R     L R  + Q G K  L ELLG 
Sbjct: 447 ILKVIHDCKSDAYSLYHGFGVKLKNVFDTSIAMRTIMEQLNRNRSYQVGFK-ALCELLGE 505

Query: 130 N--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHL 160
                    + K  ++ D W    L++E + YAASD + L
Sbjct: 506 GASHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCL 545


>gi|300864534|ref|ZP_07109398.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337492|emb|CBN54546.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 880

 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 18/179 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVGMLVD-----E 73
           + I  DTE         RL ++Q+   P D T D   I     + P LV   +D      
Sbjct: 21  EIIWADTEVADWQTPNPRLSLIQILADPNDLTGDFAYIL-DVLDKPELVENFIDLIMANP 79

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLT--RTYTNQHGLKDNLKELLGIN 130
             EK+FH   +D+  L  T   + + V CT KIA +L+  R       LK     L    
Sbjct: 80  TIEKVFHNSSYDLRYLGKT---QAKNVTCTWKIAQKLSLERLQVPNRQLKTLAAGLCKFT 136

Query: 131 -ISKAQQSSDWSADDLSDEQLQYAASDVVHL---HALRLQFTEKLQRLGRSDLATSCCN 185
            I+K +Q+SDW    L+ +QL YA  D V+L   H   L+ T +   + +S+++    N
Sbjct: 137 EINKQEQTSDWGRRPLTQKQLDYAKMDTVYLAGVHRRLLELTNQKHLIIKSNISMPPAN 195


>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa]
 gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa]
          Length = 858

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 10/147 (6%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLVGMLVDE 73
           R V+  AVD E       +   C++Q+S    D  VD +  RI  G    P L  +  D 
Sbjct: 250 RGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVG----PYLREVFKDP 305

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            + K+ H    D+  L   FG+ +  +F T  ASR+ +   N   L+  L    G+  +K
Sbjct: 306 AKRKVMHGADRDVVWLQRDFGIYICNLFDTGQASRVLKLERN--SLEHLLHHFCGVTANK 363

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160
             Q++DW    L DE ++YA  D  +L
Sbjct: 364 EYQNADWRLRPLPDEMIRYAREDTHYL 390


>gi|294790936|ref|ZP_06756094.1| putative ribonuclease D [Scardovia inopinata F0304]
 gi|294458833|gb|EFG27186.1| putative ribonuclease D [Scardovia inopinata F0304]
          Length = 433

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKAQQSSDWSADDLSDE 148
           +Y  G+R   +F T+ A+RL     N H GL    ++ LG+ ++K   ++DWS   L+ +
Sbjct: 102 YYALGMRPSRLFDTERAARL---LGNAHFGLAAVTEKYLGLTLAKEHSAADWSYRPLNRD 158

Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
              YAA DV  L  LR   + +L+R G+ + A     FL+ + 
Sbjct: 159 MRNYAALDVEVLIELRNTLSAELRRSGKEEWAQEDFAFLLKKG 201


>gi|289706235|ref|ZP_06502598.1| putative ribonuclease D [Micrococcus luteus SK58]
 gi|289557074|gb|EFD50402.1| putative ribonuclease D [Micrococcus luteus SK58]
          Length = 416

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   +F T++A+R+      + GL   L+ELLG+ ++K  
Sbjct: 98  EWILHAASQDLPCLAEQ-GLRPDRLFDTELAARVA--GLPRVGLAAVLEELLGVTLAKEH 154

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            ++DWS   L +  L YAA DV  L  LR     +L+  G+
Sbjct: 155 SAADWSVRPLPEAMLAYAALDVELLVPLREALIARLEADGK 195


>gi|170782038|ref|YP_001710370.1| putative ribonuclease [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156606|emb|CAQ01757.1| putative ribonuclease [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 443

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+A L    G+  + +F T++ASRL      + GL   ++ELLGI+++K  
Sbjct: 122 EWVLHAASQDLACL-REVGLDPQRIFDTELASRLL--GLPRVGLGTVVEELLGIHLAKEH 178

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L    L YAA DV  L  +R +   +L+  G++ +A
Sbjct: 179 SAADWSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTAIA 223


>gi|240169721|ref|ZP_04748380.1| hypothetical protein MkanA1_10437 [Mycobacterium kansasii ATCC
           12478]
          Length = 433

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 1   MTTIRVHEGDIPAECAARYVD----AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIR 55
           M  + V  G I  E AA  +D      AVD E        +R  ++Q+   G GTV I  
Sbjct: 30  MPDLSVTVGQI--EAAAELLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDP 87

Query: 56  IAAGQKNAPNLVGML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
           ++ G + A  L  +  V  + E I H    D+  L    G+R   ++ T++A RL     
Sbjct: 88  VSHGGEPATALQPVAEVLRQDEWILHSADQDLPCL-AEVGMRPSALYDTELAGRLA--GF 144

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           ++  L   ++ LLG+ ++K   ++DWS   L    L YAA DV  L  LR   ++ L   
Sbjct: 145 DRVNLATMVERLLGLGLAKGHGAADWSKRPLPPAWLNYAALDVELLIELRAAISQVLTEQ 204

Query: 175 GRSDLAT 181
           G++  A 
Sbjct: 205 GKTGWAA 211


>gi|254776017|ref|ZP_05217533.1| ribonuclease D [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 416

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 14  ECAARYVD----AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           E AAR +D      AVD E        +R  ++Q+   G GTV I  ++ G      L  
Sbjct: 25  EDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRP 84

Query: 69  ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +  V    E I H    D+  L    G+R   ++ T++A RL      +  L   ++ LL
Sbjct: 85  VAEVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFERVNLATMVERLL 141

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           G  ++K   ++DWS   L  E L YAA DV  L  LR    + L   G++D A    ++L
Sbjct: 142 GFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAGQGKTDWAAQEFDYL 201

Query: 188 MD 189
            +
Sbjct: 202 RE 203


>gi|37526051|ref|NP_929395.1| ribonuclease D [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785481|emb|CAE14428.1| Ribonuclease D (RNase D) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 375

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 7/177 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDE 73
            A+    +A+DTE +       +L ++QL  G+    +D + I   Q        ++   
Sbjct: 18  GAKKYSKVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLNITNWQP----FRELITHP 73

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           +  K+ H G  D+ V    F     P+  T++ +     +    G    + E + + + K
Sbjct: 74  QILKLLHAGSEDLEVFLNAFQCLPEPMIDTQVLAAFI-GHPLSCGFAALVAEYIHVELDK 132

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++  +DW A  LS++Q +YAA+DV +L  L         + G  + AT  C  +  R
Sbjct: 133 SESRTDWLARPLSEKQCEYAAADVYYLLPLADILMTATAQAGYMEAATGECRLISRR 189


>gi|323495020|ref|ZP_08100109.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
 gi|323310677|gb|EGA63852.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
          Length = 346

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--- 122
            V +L D    K+ H    D+ V   +FG    P+  T++ +         HGL      
Sbjct: 41  FVHLLQDTSVLKVLHACGEDLEVFQNSFGCLPYPMVDTQLMAAFL-----GHGLSTGFAA 95

Query: 123 -LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            + E L + + K++  +DW A  L+D+QL+YAA+DV +L  L  Q  E + + G    A 
Sbjct: 96  LVNEYLNVELDKSESRTDWLARPLTDKQLEYAAADVYYLLPLYEQLFENITQAGWWQAAQ 155

Query: 182 SCCNFLM---------DRAELDLLG-WE 199
              + +          +RA LD+ G W+
Sbjct: 156 QESDLIASKRIKTVNPERAYLDVKGAWQ 183


>gi|167623763|ref|YP_001674057.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
 gi|167353785|gb|ABZ76398.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
          Length = 369

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 11/162 (6%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D + +DTE +       RL ++Q   G     I  +A    N      +L  E   K+ H
Sbjct: 24  DLLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPLAVS--NLELFWQLLNKESSVKLLH 81

Query: 81  YGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGL--KDNLKELLGINISKAQQ 136
               D+ V F  +G + +P  +F ++IA+ L       HGL     +++ L +++ K + 
Sbjct: 82  SCSEDLEV-FARYG-QCQPTNLFDSQIAAGLAGM---GHGLGYAKLVEQTLEVSLDKGES 136

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            +DW    L++ QL YAA+DV +L+ L  Q  +KL+  GR D
Sbjct: 137 RTDWLKRPLTEAQLNYAANDVYYLYKLYPQLVDKLKEQGRLD 178


>gi|327479994|gb|AEA83304.1| ribonuclease D [Pseudomonas stutzeri DSM 4166]
          Length = 374

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 10/161 (6%)

Query: 15  CAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           CA  R +  +AVDTE + +        +VQ+  GDG    +      ++      +L D 
Sbjct: 18  CAEWRQLPFVAVDTEFMRVDTFYPIAGLVQV--GDGRRAYLIDPLAVRDWHPFATLLDDA 75

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130
              K+ H    D+ VL    G   +P+F T++A+     Y N     G    ++ +LGI 
Sbjct: 76  AVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAA----GYLNIGFSMGYSRLVQAVLGIE 131

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           + K +  SDW    LS+ Q++YAA D  HL  L      KL
Sbjct: 132 LPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKL 172


>gi|325924432|ref|ZP_08185961.1| ribonuclease D [Xanthomonas gardneri ATCC 19865]
 gi|325545080|gb|EGD16405.1| ribonuclease D [Xanthomonas gardneri ATCC 19865]
          Length = 364

 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G   A  
Sbjct: 6   THPSELTQRLHAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 63

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      K+ H    D+       GV  RP+F T+IA+ L          K  ++E
Sbjct: 64  LGEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQE 122

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175
           + G  ++K +  SDW    LS  QL+YAA DV +L A+  + + +L    RLG
Sbjct: 123 VTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELSRRLTEQDRLG 175


>gi|169630071|ref|YP_001703720.1| hypothetical protein MAB_2988 [Mycobacterium abscessus ATCC 19977]
 gi|169242038|emb|CAM63066.1| Conserved hypothetical protein (putative exonuclease)
           [Mycobacterium abscessus]
          Length = 400

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 62  NAPNLVGMLVDE--KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           N P  +G +VD     E I H    D+  L     ++   ++ T++A RL      +  L
Sbjct: 79  NVPGSLGPIVDALGADEWILHAADQDLPCL-AELAMKPPSLYDTELAGRLA--GFEKVNL 135

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              +  LLG+ ++K   ++DWS   L D+ L YAA DV  L  LR +  E L   G+++ 
Sbjct: 136 ASMVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVELRDKIAEVLAEQGKTEW 195

Query: 180 A 180
           A
Sbjct: 196 A 196


>gi|311898875|dbj|BAJ31283.1| putative ribonuclease D [Kitasatospora setae KM-6054]
          Length = 411

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 14/162 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78
           +AVD E         R  ++QL   G GT  I  IA      P+L G+   L D   E +
Sbjct: 48  VAVDAERASGYRYGQRAYLIQLRRQGAGTALIDPIAC-----PDLTGLNAALADT--EWV 100

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  LF   G+    +F T++A RL      + GL    + +LG++++K   + 
Sbjct: 101 VHAATQDLPCLF-EVGMHPGVLFDTELAGRLA--GFPRVGLGPMTENVLGLSLAKEHSAV 157

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DWS   L +  L+YAA DV  L  LR     +L R G+ D A
Sbjct: 158 DWSTRPLPEPWLRYAALDVEVLVDLRDALEAELDRQGKLDWA 199


>gi|330941897|gb|EGH44622.1| ribonuclease D [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 377

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVLHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164


>gi|284031654|ref|YP_003381585.1| 3'-5' exonuclease [Kribbella flavida DSM 17836]
 gi|283810947|gb|ADB32786.1| 3'-5' exonuclease [Kribbella flavida DSM 17836]
          Length = 422

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+A L    G+  R VF T++A RL      + GL   + E+LG  + K  
Sbjct: 104 EWIIHAANQDLACL-AEVGMVPRQVFDTELAGRLL--GYPKVGLASLVSEVLGYRMRKEH 160

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L    L YAA DV  L  LR    ++L+R G+ + A
Sbjct: 161 SAADWSTRPLPGPWLVYAALDVEMLIELRDAIEQELRREGKWEWA 205


>gi|146281747|ref|YP_001171900.1| ribonuclease D [Pseudomonas stutzeri A1501]
 gi|145569952|gb|ABP79058.1| ribonuclease D [Pseudomonas stutzeri A1501]
          Length = 401

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 10/161 (6%)

Query: 15  CAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           CA  R +  +AVDTE + +        +VQ+  GDG    +      ++      +L D 
Sbjct: 45  CAEWRQLPFVAVDTEFMRVDTFYPIAGLVQV--GDGRRAYLIDPLAVRDWHPFATLLDDA 102

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130
              K+ H    D+ VL    G   +P+F T++A+     Y N     G    ++ +LGI 
Sbjct: 103 AVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAA----GYLNIGFSMGYSRLVQAVLGIE 158

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           + K +  SDW    LS+ Q++YAA D  HL  L      KL
Sbjct: 159 LPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKL 199


>gi|289628944|ref|ZP_06461898.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651074|ref|ZP_06482417.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298486131|ref|ZP_07004194.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159138|gb|EFI00196.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330868058|gb|EGH02767.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 377

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164


>gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246]
          Length = 203

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 12/129 (9%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           +   +AVDTET GL P RDR+ ++Q++ G     +D+   A    +   L   L D  +E
Sbjct: 47  WAGPVAVDTETTGLDPARDRVRLIQVAAGQDVALIDVFAFADPVADLRPLFAALAD--KE 104

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----RTYTN---QHGLKDNLKELLGI 129
           ++ H  +FD+  L   F      VF T +ASR+     R  +N   +HGL D     LG 
Sbjct: 105 QVGHNLQFDLRFL-APFEFVPGKVFDTILASRVRHAGDRAESNGRFRHGLGDAAARELGR 163

Query: 130 NISKAQQSS 138
           ++ K++Q+ 
Sbjct: 164 SLDKSEQTP 172


>gi|330959294|gb|EGH59554.1| ribonuclease D [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 377

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164


>gi|307946769|ref|ZP_07662104.1| ribonuclease D [Roseibium sp. TrichSKD4]
 gi|307770433|gb|EFO29659.1| ribonuclease D [Roseibium sp. TrichSKD4]
          Length = 330

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 22/137 (16%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK----- 124
           + D    K+FH  R D+ ++++   +   P+F +++A+ +        G  D++      
Sbjct: 1   MADRNVTKVFHAARQDVEIVYHLGKLIPAPLFDSQVAAMVC-------GFGDSISYDQLV 53

Query: 125 -ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ++ G  I K+ + +DWS   L+ +QL+YA +DV HL  +       L   GRS      
Sbjct: 54  YKVTGAQIDKSSRFTDWSRRPLTQKQLEYALADVTHLRDVYQFLKANLAEQGRS------ 107

Query: 184 CNFLMDRAELDLLGWEN 200
            +++ D  E+++L  EN
Sbjct: 108 -HWVQD--EMEILTSEN 121


>gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
 gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
          Length = 414

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 7/159 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           +AVDTE         R  +VQL   G GTV +  IA G +  P LV  L  E  E + H 
Sbjct: 50  VAVDTERASGYRYSQRAYLVQLRREGAGTVLVDPIALGGRLDP-LVEAL--EGTEWVLHA 106

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L    G+    +F T++A RL      +  L   ++ LLG  + K   ++DWS
Sbjct: 107 ASQDLPCL-AELGLTPSALFDTELAGRLA--GFERVALGTLVELLLGYRLEKGHGAADWS 163

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
              L  + L YAA DV  L  LR    E+L++ G+ + A
Sbjct: 164 RRPLPADWLNYAALDVELLVQLRDVLEEELRQQGKLEWA 202


>gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi]
 gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi]
          Length = 1429

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 24   AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81
             +D ET GL    +++ ++Q++  +  V I  +     N     L  +L DE   KI   
Sbjct: 1246 GLDMETTGLEVFGEKIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVKIIQN 1305

Query: 82   GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139
            G+FD   L Y     +  +F T IAS+L     N +G K N  +++ L + + K QQ+S 
Sbjct: 1306 GKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQQQNSV 1364

Query: 140  WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            W+   L++ QL YAA D   L  L  + +E++
Sbjct: 1365 WNNSLLNNNQLFYAARDSSCLLKLYKKLSEQI 1396


>gi|330894750|gb|EGH27411.1| ribonuclease D [Pseudomonas syringae pv. mori str. 301020]
          Length = 377

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164


>gi|157375657|ref|YP_001474257.1| ribonuclease D [Shewanella sediminis HAW-EB3]
 gi|157318031|gb|ABV37129.1| ribonuclease D [Shewanella sediminis HAW-EB3]
          Length = 369

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +       RL ++Q   G     I  IA G  N      +L + +   + H  
Sbjct: 26  LVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPIAVG--NLSEFWSLLTEPEITTVLHSC 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V       +   +F ++IA+ L   + +  G    +++ L I + K +  +DW  
Sbjct: 84  SEDLEVFARNGQCQPIRLFDSQIAASLC-GFGHGLGYAKLVEQTLNIALDKGESRTDWMK 142

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             LS  QL YAA+DV +L+ L  Q  +KL+   R D
Sbjct: 143 RPLSKAQLTYAANDVYYLYELYPQLIQKLEDTDRLD 178


>gi|300867748|ref|ZP_07112393.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300334331|emb|CBN57565.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 433

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT---NQHGLKDNLKELLGI-NI 131
           EK+ H   +DI  L      R + + CT   +R    Y      H LK  ++ L GI N+
Sbjct: 81  EKVMHNASYDIRFLG---NDRAQNITCTLKLARKIPYYVLPLPNHKLKTLIEALCGIPNV 137

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            KA+Q  DW    L+++QL+YA  DVV+L
Sbjct: 138 DKAEQGGDWGKRPLTEKQLEYAKMDVVYL 166


>gi|257483935|ref|ZP_05637976.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320325216|gb|EFW81283.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327790|gb|EFW83798.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330989388|gb|EGH87491.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331013134|gb|EGH93190.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 377

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164


>gi|71735861|ref|YP_273799.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556414|gb|AAZ35625.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 377

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164


>gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
          Length = 1813

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 24   AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81
             +D ET GL    +++ ++Q++  +  V I  +     N     L  +L DE   KI   
Sbjct: 1265 GLDMETTGLEVFGEKIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVKIIQN 1324

Query: 82   GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139
            G+FD   L Y     +  +F T IAS+L     N +G K N  +++ L + + K QQ+S 
Sbjct: 1325 GKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQQQNSV 1383

Query: 140  WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            W+   L++ QL YAA D   L  L  + +E++
Sbjct: 1384 WNNSLLNNNQLFYAARDSSCLLKLYKKLSEQI 1415


>gi|254411454|ref|ZP_05025231.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196181955|gb|EDX76942.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 862

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 20/152 (13%)

Query: 25  VDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLV-----GMLVDEKREK 77
           +DTE         RL ++Q+   P D T D   I     N P++V      ++V+   EK
Sbjct: 24  LDTEVADWQTSNPRLSLIQILADPTDRTGDRAYIFDVLDN-PDIVRDFVAQIMVNPNIEK 82

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGI------- 129
           +FH   FD+   F     + + V CT K+  +LT+  + +  L+ + K+L  +       
Sbjct: 83  VFHNASFDLK--FLGGKHQAQNVTCTFKLVRKLTKK-SRKTPLQVSNKQLKTLAVELCHF 139

Query: 130 -NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            N+ K +QSSDW    L+ +QL YA  D V+L
Sbjct: 140 TNVDKTEQSSDWGQRPLTPKQLHYAKMDTVYL 171


>gi|330877463|gb|EGH11612.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 307

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 17/148 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           +A+DTE + +        ++Q+  GDG     +D + I   Q     L  +L +    K+
Sbjct: 27  VALDTEFMRVDTFYPIAALLQI--GDGQSAWLIDPLLINDWQP----LSALLENPDVIKV 80

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQ 135
            H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K +
Sbjct: 81  VHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLNIDLPKGE 136

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHAL 163
             SDW    LS+ Q+ YAA D VHL  L
Sbjct: 137 TRSDWLQRPLSETQISYAAEDAVHLAEL 164


>gi|262166092|ref|ZP_06033829.1| ribonuclease D [Vibrio mimicus VM223]
 gi|262025808|gb|EEY44476.1| ribonuclease D [Vibrio mimicus VM223]
          Length = 328

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
            V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    +++
Sbjct: 21  FVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQD 79

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++   G  + A
Sbjct: 80  QLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAGWWEAA 134


>gi|238650864|ref|YP_002916719.1| ribonuclease D [Rickettsia peacockii str. Rustic]
 gi|238624962|gb|ACR47668.1| ribonuclease D [Rickettsia peacockii str. Rustic]
          Length = 281

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE         +L I+Q+   +  G +D    A    +      +L D    KIFH
Sbjct: 23  LSIDTEFERRYTYYTQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W
Sbjct: 79  APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 137

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
               ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D
Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKELNNIIVRNNLTNKYQTTLSALLD 186


>gi|189218664|ref|YP_001939305.1| Ribonuclease D [Methylacidiphilum infernorum V4]
 gi|189185522|gb|ACD82707.1| Ribonuclease D [Methylacidiphilum infernorum V4]
          Length = 324

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + E I H   +D+ +L      + R +F T IA++L       +    +L     + ++K
Sbjct: 29  RSEWICHGMDYDLKMLRKAGCPQPRTIFDTHIAAKLCGFEAVGYARLVSL--FFQVKLTK 86

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
             Q +DWS   L    + Y A DV++L  L+   T  L+ LGR +     C  +  + E 
Sbjct: 87  EHQKADWSRRPLPPSLINYTAKDVLYLEKLKEILTRLLKSLGRWEWMEQSCKRIQRKIEN 146

Query: 194 DLLG----WENVD 202
             LG    WE ++
Sbjct: 147 SFLGSPKEWERIE 159


>gi|229586838|ref|YP_002845339.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|228021888|gb|ACP53596.1| Ribonuclease D [Rickettsia africae ESF-5]
          Length = 281

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE         +L I+Q+   +  G +D    A    +      +L D    KIFH
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W
Sbjct: 79  APREDLEIFYNLFNTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 137

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
               ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D
Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKEINNIIVRNNLTNKYQTTLSALLD 186


>gi|166711789|ref|ZP_02242996.1| ribonuclease D [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 363

 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 6/156 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +DTE +       +L +VQ++ G+  + I  +      A  L   L      K+ H  
Sbjct: 23  IGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPSMNAA--LKEWLTATDIVKVMHSA 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+       GV  RP+F T+IA+ L          K  ++E+ G  ++K +  SDW  
Sbjct: 81  SEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQEVTGTLLTKGETRSDWMR 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175
             LS  QL+YAA DV +L A+  + T +L    RLG
Sbjct: 140 RPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLG 175


>gi|145336746|ref|NP_175846.3| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana]
 gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana]
 gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana]
          Length = 637

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVD 72
            A + V+  AVD E       +   C++Q+S    D  VDI ++       P L  +  D
Sbjct: 129 AALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKL--WDHIGPYLRELFKD 186

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            K++K+ H    DI  L   FG+ V  +F T  ASR+ +   N   L+  LK   G+  +
Sbjct: 187 PKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERN--SLEFLLKHYCGVAAN 244

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHL 160
           K  Q +DW    L D   +YA  D  +L
Sbjct: 245 KEYQKADWRIRPLPDVMKRYAREDTHYL 272


>gi|90020985|ref|YP_526812.1| ribonuclease D [Saccharophagus degradans 2-40]
 gi|89950585|gb|ABD80600.1| ribonuclease D [Saccharophagus degradans 2-40]
          Length = 386

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 5/167 (2%)

Query: 14  ECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           EC  R+     +AVDTE +          ++Q++  DG  + +       +      +LV
Sbjct: 21  ECCERWQSKKLLAVDTEFMRSQTYYPIAGLIQVN--DGEANYLLDPTTIDDFSPFAEILV 78

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D+   K  H    D+ V +++FG   + +F T+IA           G    ++ +LG+ +
Sbjct: 79  DDDIIKAIHSCSEDLEVFYHSFGFLPQRLFDTQIAGAFV-NLGYSMGFARMVQGVLGVEL 137

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            K +  SDW    LS  Q  YAA DV +L+ L  +   +L+   R D
Sbjct: 138 PKTETRSDWLQRPLSVAQKHYAALDVEYLYLLAGKLLTELKAKERLD 184


>gi|145224502|ref|YP_001135180.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
 gi|145216988|gb|ABP46392.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
          Length = 424

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 11/170 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKN----APNLVGMLVDEKREK 77
            AVD E        +R  +VQ+   G GTV I  ++ G       AP    +  DE    
Sbjct: 55  FAVDAERASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVAAVLSTDEW--- 111

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+ ++K   +
Sbjct: 112 VLHAADQDLPCL-AEIGMRPTALYDTELAGRLANF--DRVNLAAMVQRLLGLQLTKGHGA 168

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +DWS   L DE L YAA DV  L  LR      L   G+++ A     +L
Sbjct: 169 ADWSKRPLPDEWLNYAALDVEVLTDLREAIAAVLDEQGKAEWARQEFEYL 218


>gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana]
          Length = 642

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVD 72
            A + V+  AVD E       +   C++Q+S    D  VDI ++       P L  +  D
Sbjct: 129 AALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKL--WDHIGPYLRELFKD 186

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            K++K+ H    DI  L   FG+ V  +F T  ASR+ +   N   L+  LK   G+  +
Sbjct: 187 PKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERN--SLEFLLKHYCGVAAN 244

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHL 160
           K  Q +DW    L D   +YA  D  +L
Sbjct: 245 KEYQKADWRIRPLPDVMKRYAREDTHYL 272


>gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana]
          Length = 639

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVD 72
            A + V+  AVD E       +   C++Q+S    D  VDI ++       P L  +  D
Sbjct: 129 AALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKL--WDHIGPYLRELFKD 186

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            K++K+ H    DI  L   FG+ V  +F T  ASR+ +   N   L+  LK   G+  +
Sbjct: 187 PKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLERN--SLEFLLKHYCGVAAN 244

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHL 160
           K  Q +DW    L D   +YA  D  +L
Sbjct: 245 KEYQKADWRIRPLPDVMKRYAREDTHYL 272


>gi|330955621|gb|EGH55881.1| ribonuclease D [Pseudomonas syringae Cit 7]
          Length = 235

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 20  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 75

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 76  GETRSDWLERPLSETQISYAAEDAVHLAEL 105


>gi|239917797|ref|YP_002957355.1| ribonuclease D [Micrococcus luteus NCTC 2665]
 gi|239839004|gb|ACS30801.1| ribonuclease D [Micrococcus luteus NCTC 2665]
          Length = 416

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   +F T++A+R+      + GL   L+ELLG+ ++K  
Sbjct: 98  EWILHAASQDLPCLAEQ-GLRPDRLFDTELAARVA--GLPRVGLVAVLEELLGVTLAKEH 154

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            ++DWS   L +  L YAA DV  L  LR     +L+  G+
Sbjct: 155 SAADWSVRPLPEAMLTYAALDVELLVPLREALIARLEADGK 195


>gi|218442029|ref|YP_002380358.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
 gi|218174757|gb|ACK73490.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
          Length = 648

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 62  NAPNLVGMLVDE-----KREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTN 115
           + P+L+   +++     + EK+FH   FDI  L       V+ V CT KIA ++ +   N
Sbjct: 63  DKPDLIQDFINQIMKNPQIEKVFHNASFDIKYL--GGKEEVKNVTCTLKIAKKIGKHSLN 120

Query: 116 QHGLK-DNLKELL-GINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
              LK   L E L  + I + QQ+SDW    L++ QL YA  DVV+L
Sbjct: 121 VPNLKLKTLAEYLCNLPIVEDQQASDWGKRPLTELQLNYAKMDVVYL 167


>gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
          Length = 2215

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 83   RFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSD 139
            R +I  L    GV V  P+F T IA+++        G K    ++  LG+ + K  Q+SD
Sbjct: 1688 RPEIGALQSDGGVYVSGPIFDTLIAAKVVEAGVMGTGFKLLQVVERFLGVLMDKRMQASD 1747

Query: 140  WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            WS+  LS EQL YAA D   +  L+ +   KL+
Sbjct: 1748 WSSPHLSQEQLLYAARDAAVMLPLQQRLQRKLE 1780



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 22   AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKI 78
            ++ VD ET GL P   R+ ++QL+  D    +  + A   ++P+L     +L   +  K+
Sbjct: 1527 SMGVDVETTGLDPYSARVRLLQLALPDFPTLLFDLFALPVSSPSLRAVRLLLASPRIRKV 1586

Query: 79   FHYGRFDIAVL 89
            FH G+FD+  L
Sbjct: 1587 FHNGKFDLCFL 1597


>gi|302187116|ref|ZP_07263789.1| ribonuclease D [Pseudomonas syringae pv. syringae 642]
          Length = 377

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164


>gi|330975291|gb|EGH75357.1| ribonuclease D [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 377

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164


>gi|315444833|ref|YP_004077712.1| ribonuclease D [Mycobacterium sp. Spyr1]
 gi|315263136|gb|ADT99877.1| ribonuclease D [Mycobacterium sp. Spyr1]
          Length = 424

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 11/170 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKN----APNLVGMLVDEKREK 77
            AVD E        +R  +VQ+   G GTV I  ++ G       AP    +  DE    
Sbjct: 55  FAVDAERASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVAAVLSTDEW--- 111

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+ ++K   +
Sbjct: 112 VLHAADQDLPCL-AEIGMRPTALYDTELAGRLANF--DRVNLAAMVQRLLGLQLTKGHGA 168

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +DWS   L DE L YAA DV  L  LR      L   G+++ A     +L
Sbjct: 169 ADWSKRPLPDEWLNYAALDVEVLTDLREAIAAILDEQGKAEWARQEFEYL 218


>gi|75906891|ref|YP_321187.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
 gi|75700616|gb|ABA20292.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
          Length = 302

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 15/147 (10%)

Query: 25  VDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVG-----MLVDEKREK 77
           +DTE      R  RL ++Q+   P D + D + +     + P+LV      ++V    EK
Sbjct: 25  IDTEVADYKSRNPRLSLIQVLDDPDDMSGDRVYLL-DVLDQPDLVANFVEKIMVSTNIEK 83

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLT-RTYTNQHGLKDNLKELL--GINISK 133
           +FH   FD+ +L      + + + CT +IA ++       Q+    +L  LL    NI K
Sbjct: 84  VFHNASFDVKLLG---NKQAKNITCTLEIAKKIPYHLLPVQNYQLQSLATLLCNFNNIDK 140

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160
            +QSS+W    LS+EQ++YA  D ++L
Sbjct: 141 QEQSSNWGRRPLSEEQIEYAYLDCIYL 167


>gi|253989912|ref|YP_003041268.1| ribonuclease D [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638250|emb|CAR66874.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781362|emb|CAQ84524.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica]
          Length = 375

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 7/176 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           A+    IA+DTE +       +L ++QL  G+    +D + I   Q        ++ + +
Sbjct: 19  AKEYAKIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLNITNWQP----FRELITNPQ 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K  H G  D+ V    F     P+  T++ +     +    G    + E + + + K+
Sbjct: 75  ILKFLHAGSEDLEVFLNAFQCLPEPMIDTQVLAAFI-GHPLSCGFAALVAEYIHVELDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +  +DW A  LS++Q +YAA+DV +L  L         + G  + A   C  +  R
Sbjct: 134 ESRTDWLARPLSEKQCEYAAADVYYLLPLADILITATTQAGYMEAAIGECELISQR 189


>gi|159037106|ref|YP_001536359.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
 gi|157915941|gb|ABV97368.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
          Length = 451

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R R +F T++A+RL      + GL    + LLG ++ K  
Sbjct: 134 EWVLHAASQDLPCL-AELGLRPRRLFDTELAARLA--GFERVGLAALTEHLLGFSLEKHH 190

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            ++DWS+  L +  L YAA DV  L  LR     +L R G+
Sbjct: 191 SAADWSSRPLPESWLTYAALDVELLVELRDALEAELTRQGK 231


>gi|108799177|ref|YP_639374.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
 gi|119868292|ref|YP_938244.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
 gi|126434785|ref|YP_001070476.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
 gi|108769596|gb|ABG08318.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
 gi|119694381|gb|ABL91454.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
 gi|126234585|gb|ABN97985.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
          Length = 428

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 24  AVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDE---KREKIF 79
           A+D E        +R  +VQ+   G GTV I  +  G+   P +V   V +     E + 
Sbjct: 61  AIDAERASGFRYSNRAYLVQIRREGAGTVLIDPVNHGED--PTMVMAPVADVLDTDEWVL 118

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+R   ++ T++A RL      +  L   + ELLG+ + K   ++D
Sbjct: 119 HAADQDLPCL-AELGMRPPKLYDTELAGRLA--GLARVNLATMVSELLGLQLMKGHGAAD 175

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           WS   L D+ L YAA DV  L  LR      L   G++D A
Sbjct: 176 WSKRPLPDDWLNYAALDVEVLLELRDAVAAVLDDQGKTDWA 216


>gi|67459201|ref|YP_246825.1| ribonuclease D [Rickettsia felis URRWXCal2]
 gi|67004734|gb|AAY61660.1| Ribonuclease D [Rickettsia felis URRWXCal2]
          Length = 281

 Score = 48.9 bits (115), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE         +L I+Q+   +  G +D    A    +      +L D    KIFH
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W
Sbjct: 79  APREDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 137

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
               ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D
Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLD 186


>gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7]
 gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7]
          Length = 393

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 1/111 (0%)

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L D +  K+ H    D+ V     G    P+F T++A+       +  G    +KE+L 
Sbjct: 91  LLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLD 149

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           I++ K +  SDW    L++ Q++YAA DV HL  + L    +L    R+ L
Sbjct: 150 IDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWL 200


>gi|281413711|ref|ZP_06245453.1| ribonuclease D [Micrococcus luteus NCTC 2665]
          Length = 415

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   +F T++A+R+      + GL   L+ELLG+ ++K  
Sbjct: 98  EWILHAASQDLPCLAEQ-GLRPDRLFDTELAARVA--GLPRVGLVAVLEELLGVTLAKEH 154

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            ++DWS   L +  L YAA DV  L  LR     +L+  G+
Sbjct: 155 SAADWSVRPLPEAMLTYAALDVELLVPLREALIARLEADGK 195


>gi|237800267|ref|ZP_04588728.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023124|gb|EGI03181.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 377

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQISYAAEDAVHLAEL 164


>gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1]
 gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax]
          Length = 1860

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 5/137 (3%)

Query: 24   AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA--PNLVGMLVDEKREKIFHY 81
             +D ET GL    +++ ++Q++  D  V I  +    K +    L  +L +EK  KI   
Sbjct: 1312 GLDIETTGLEVFDEKIRLIQIAVEDYPVIIYDMFNITKESILTGLREVLKNEKVVKIIQN 1371

Query: 82   GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139
            G+FD   L +     V  +F T IAS+L     N +G K N  +++ L + + K QQ+S 
Sbjct: 1372 GKFDAKFLMHN-KFEVANIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQQNSV 1430

Query: 140  WSADDLSDEQLQYAASD 156
            W+   L++ QL YAA D
Sbjct: 1431 WNNSLLNNNQLFYAARD 1447


>gi|15604326|ref|NP_220842.1| ribonuclease D (RND) [Rickettsia prowazekii str. Madrid E]
 gi|3861018|emb|CAA14918.1| RIBONUCLEASE D (rnd) [Rickettsia prowazekii]
 gi|292572078|gb|ADE29993.1| Ribonuclease D [Rickettsia prowazekii Rp22]
          Length = 281

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-QKNAPNLVGMLVDEKREKIFH 80
           ++++DTE         +L I+Q+   +G   II   +    N  N   +L+D    KIFH
Sbjct: 22  SLSIDTEFERRYTYYAQLSIIQVK-AEGYCGIIDTLSNLDLNIFN--KLLIDNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL-KELLGINISKAQQSSD 139
             R D+ + +  F      +F  +IA+ +      Q    DNL  +L+GI I K  Q S+
Sbjct: 79  APREDLEIFYNLFKTLPSNIFDIQIAASICGF--GQQLSYDNLCYKLIGITIDKTHQKSN 136

Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163
           W    ++++ L YA  DV +L+ +
Sbjct: 137 WLKRPITNDMLNYAILDVEYLYKI 160


>gi|315123522|ref|YP_004065528.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
           SM9913]
 gi|315017282|gb|ADT70619.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
           SM9913]
          Length = 376

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +        + ++Q+  G+    I  +A  + +  +   +L D K  K+ H  
Sbjct: 25  LAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLA--ELSLFDFWQILKDPKVLKVLHSP 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI V     G    P+F T+ A +L     N  G    +K LL I I K++  ++W  
Sbjct: 83  SEDIEVFQKYAGFVPYPLFDTQFALQLLGE-GNCMGFALMVKTLLNIEIDKSESRTNWLQ 141

Query: 143 DDLSDEQLQYAASDVVHL 160
             L+ +QL+YAA+D  HL
Sbjct: 142 RPLTQKQLEYAAADTYHL 159


>gi|330900086|gb|EGH31505.1| ribonuclease D [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 377

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQITYAAEDAVHLAEL 164


>gi|34581576|ref|ZP_00143056.1| ribonuclease D [Rickettsia sibirica 246]
 gi|28262961|gb|EAA26465.1| ribonuclease D [Rickettsia sibirica 246]
          Length = 281

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE         +L I+Q+   +  G +D    A    +      +L D    KIFH
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W
Sbjct: 79  APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 137

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
               ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D
Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKEINNIIVRNNLTNKYQTTLSALLD 186


>gi|66044808|ref|YP_234649.1| ribonuclease D [Pseudomonas syringae pv. syringae B728a]
 gi|63255515|gb|AAY36611.1| Ribonuclease D [Pseudomonas syringae pv. syringae B728a]
          Length = 377

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQVSYAAEDAVHLAEL 164


>gi|296270237|ref|YP_003652869.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
 gi|296093024|gb|ADG88976.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
          Length = 403

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AR    +A+D E         R  +VQL   G GT  I  +A        L  +L D   
Sbjct: 34  ARGTGPVAMDAERASGYRYSGRAYLVQLRREGAGTALIDPVACPDLG--ELDRVLADA-- 89

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G R R +F T++A+RL      + GL   ++ +LG+ + K  
Sbjct: 90  EIVLHAATQDLPCL-AELGFRPRRLFDTELAARLL--GYERVGLATMVEVVLGLRLEKGH 146

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L ++ L+YAA DV  L  LR    E+L   G+ + A
Sbjct: 147 SAADWSRRPLPEDWLRYAALDVEVLVELRDALYEQLVESGKLEWA 191


>gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
 gi|238658291|emb|CAZ29351.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
          Length = 830

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVD E           C++Q+S   G+  II   A + +   L  +  D K  K+FH  
Sbjct: 236 IAVDLEHHSYRSFLGITCLIQMS-TLGSDYIIDALALRDHLSILNEVFTDPKIVKVFHGS 294

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+  L   FGV V  +F T IA+RL +    +  L   L+  +GI  +K  Q +DW  
Sbjct: 295 DSDLMWLQRDFGVYVVNLFDTGIAARLLQY--GRFSLSYLLQRFVGIYANKKYQLADWRI 352

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
             L +E ++YA SD  +L  +  +   +LQ
Sbjct: 353 RPLPNELIEYARSDTHYLLHIASRMCRELQ 382


>gi|289178849|gb|ADC86095.1| Ribonuclease D [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 440

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H  R D+   F   G++ R +F T+IA++L   +  + GL       LGI ++K  
Sbjct: 103 EWILHDSRQDLPG-FAQIGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEH 159

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            ++DWS   L  +   YAA DV  L  L    T +L+R G+ + A    ++ +
Sbjct: 160 SAADWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDYAL 212


>gi|330974089|gb|EGH74155.1| ribonuclease D [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 377

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISK 133
           K+ H    D+ VL    G    P+F T++A+     Y N     G    ++E+L I++ K
Sbjct: 79  KVVHACSEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQEVLDIDLPK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 135 GETRSDWLQRPLSETQVSYAAEDAVHLAEL 164


>gi|332992448|gb|AEF02503.1| ribonuclease D [Alteromonas sp. SN2]
          Length = 385

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE +        L ++QL  G   V I  +A    +    + ++ + +  
Sbjct: 19  AQQQKAVALDTEFVRTRTLSPHLGLIQLYDGHQLVLIDPLAID--DLSPFIALMENTRVV 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+      F     PVF ++ A+ +     +  G    ++ L  +++ K + 
Sbjct: 77  KVLHSCSEDLETFLTAFNTVPTPVFDSQFAASILGLGASL-GYAKLVELLCDVSLDKGES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            +DW A  L + QL YAA+DV++L        EK+   G+
Sbjct: 136 RTDWIARPLREAQLSYAANDVLYLLPCYEHLVEKINEAGK 175


>gi|323359928|ref|YP_004226324.1| ribonuclease D [Microbacterium testaceum StLB037]
 gi|323276299|dbj|BAJ76444.1| ribonuclease D [Microbacterium testaceum StLB037]
          Length = 398

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E +FH    D+  L    G+    +F T++ +RL      + GL   +++ LGI ++KA 
Sbjct: 77  EWVFHAASQDLPSL-RERGLEPPRIFDTELGARLL--GHERVGLGAVVEQTLGITLAKAH 133

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            ++DWS   L    L+YAA DV HL  +R     +L+   +++ A      +++R
Sbjct: 134 SAADWSTRPLPASWLEYAALDVEHLIDVRDVLVAELEEQQKTEFARQEFQAVLER 188


>gi|219683452|ref|YP_002469835.1| ribonuclease D [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621102|gb|ACL29259.1| putative ribonuclease D [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 430

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H  R D+   F   G++ R +F T+IA++L   +  + GL       LGI ++K  
Sbjct: 93  EWILHDSRQDLPG-FAQIGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEH 149

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            ++DWS   L  +   YAA DV  L  L    T +L+R G+ + A    ++ +
Sbjct: 150 SAADWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDYAL 202


>gi|183601395|ref|ZP_02962765.1| hypothetical protein BIFLAC_02027 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191105|ref|YP_002968499.1| hypothetical protein Balac_1081 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196511|ref|YP_002970066.1| hypothetical protein Balat_1081 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219001|gb|EDT89642.1| hypothetical protein BIFLAC_02027 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249497|gb|ACS46437.1| hypothetical protein Balac_1081 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251065|gb|ACS48004.1| hypothetical protein Balat_1081 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794094|gb|ADG33629.1| hypothetical protein BalV_1041 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 433

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H  R D+   F   G++ R +F T+IA++L   +  + GL       LGI ++K  
Sbjct: 96  EWILHDSRQDLPG-FAQIGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEH 152

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            ++DWS   L  +   YAA DV  L  L    T +L+R G+ + A    ++ +
Sbjct: 153 SAADWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDYAL 205


>gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
 gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
          Length = 682

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 29/165 (17%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT-----------VDIIRIAAGQKNAPNLVGMLV 71
           + +D ET GL P +DR  ++ LS    T           ++ +R     K  P LVG   
Sbjct: 150 LGLDLETTGLDPHQDRPRLLSLSTERDTYLVDLFALPHALEALRPLFEAKTGPVLVG--- 206

Query: 72  DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                   H  +FD+A L         R ++CT +A ++    +    L D     L   
Sbjct: 207 --------HNLKFDLAFLLKAGLWPEGRRLWCTGLAHQVIHARSRMPALAD-----LVPG 253

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           + K  Q+SDWS   +S+ QL YAA D   L  L  Q  E+ +RLG
Sbjct: 254 LDKRLQTSDWSGP-ISEAQLAYAARDTQVLLPLYHQQQEESRRLG 297


>gi|332670632|ref|YP_004453640.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484]
 gi|332339670|gb|AEE46253.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484]
          Length = 424

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 20/185 (10%)

Query: 7   HEGDIPAECAARYVDA-------IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58
           H  D P E A R V A       +AVD E         R  +VQL   G GT  I  +A 
Sbjct: 37  HVVDTPEELA-RVVAAFGAGTGPVAVDAERASGYRYGQRTYLVQLRREGAGTALIDPVAL 95

Query: 59  GQKNAPN--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              +A +  LVG+      E + H    D+  L    G+R   +F T++ +RL      +
Sbjct: 96  PDLSALSEALVGV------EWVLHAASQDLPGLTEQ-GMRPTRIFDTELGARLL--GMER 146

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            GL   + + LG+ ++K   + DWS   L  E L+YAA DV  L  LR    E+L   G+
Sbjct: 147 VGLAAVVADALGLGLAKEHSAVDWSTRPLPQEWLRYAALDVEVLVPLREVLAERLAVAGK 206

Query: 177 SDLAT 181
           ++ A 
Sbjct: 207 AEWAA 211


>gi|312882473|ref|ZP_07742214.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369873|gb|EFP97384.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 346

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 11/155 (7%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           +DTE +       +L ++QL  G   + +I        +P  + +L D    K+ H    
Sbjct: 2   LDTEFVRTRTYHPQLGLIQLYDGQ-NLSLIDPKVIDDMSP-FIDLLKDPSVLKVLHACGE 59

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINISKAQQSSDW 140
           D+ V   +FG    P+  T++ +         HGL      L    L + + K++  +DW
Sbjct: 60  DLEVFHNSFGCLPHPMVDTQLMAAFL-----GHGLSTGFAALVEQYLEVELDKSESRTDW 114

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            A  L+ +QL YAA+DV +L  L     EK++++G
Sbjct: 115 LARPLTQKQLDYAAADVFYLKPLFSLLLEKIEQVG 149


>gi|157964642|ref|YP_001499466.1| ribonuclease D [Rickettsia massiliae MTU5]
 gi|157844418|gb|ABV84919.1| Ribonuclease D [Rickettsia massiliae MTU5]
          Length = 284

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE         +L I+Q+   +  G +D    A    +      +L D    KIFH
Sbjct: 26  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 81

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W
Sbjct: 82  APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 140

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
               ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D
Sbjct: 141 LKRPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLD 189


>gi|312959586|ref|ZP_07774103.1| ribonuclease D [Pseudomonas fluorescens WH6]
 gi|311286303|gb|EFQ64867.1| ribonuclease D [Pseudomonas fluorescens WH6]
          Length = 377

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 9/152 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE + +        ++Q+  GDG    +       N   L  +L +    K+ H  
Sbjct: 27  VALDTEFMRVDTFYPIAGLIQI--GDGVRAYLIDPLTIDNWQPLAALLENPSVIKVVHAC 84

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139
             D+ VL    G    P+F T++A+     Y N     G    ++ +L I++ K +  SD
Sbjct: 85  SEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQAVLDIDLPKGETRSD 140

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           W    LS+ Q+ YAA D VHL  +  +   KL
Sbjct: 141 WLQRPLSETQISYAAEDAVHLAEVYTRLRPKL 172


>gi|148653524|ref|YP_001280617.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1]
 gi|148572608|gb|ABQ94667.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1]
          Length = 431

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 16/172 (9%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL----VGMLVDEKRE 76
           D +A+DTE +        L +VQ++ G     I        +AP L      ++++E   
Sbjct: 67  DRVALDTEFIKRNTYFPILALVQINTGKAIYLI--------DAPKLDLTEFWVVLEEMPL 118

Query: 77  KIFHYGRFDIAVLFY-TFGVRVRPVFCTKIA-SRLTRTYTNQHGLKDNLKELLGINISKA 134
            I+H    D+ + +  +    +  VF T+IA S LT     Q G +  L + L +++ KA
Sbjct: 119 MIWHACGEDLGIFYLLSESPALTNVFDTQIALSYLTGQL--QMGYQQALSQELDVHVEKA 176

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           +  SDW A  LS EQ  YA  DV +L  L     ++L + G +D     C  
Sbjct: 177 ESQSDWLARPLSHEQENYAIDDVRYLLNLYDILQQQLSKQGLTDKVVEDCQL 228


>gi|307154950|ref|YP_003890334.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
 gi|306985178|gb|ADN17059.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
          Length = 305

 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 20/161 (12%)

Query: 25  VDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKI 78
           +DTE      ++ RL ++Q+       DG+   I     +++  +  +  ++ +E+  K+
Sbjct: 25  LDTEVADFKSQKPRLSLIQMLAYPQDKDGSRTFIIDVLNKRDEVDYFIEKIMSNEQINKV 84

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCT-KIASR-----LTRTYTNQHGLKDNLKELLGINIS 132
           FH  + D+  L    G + + + CT K+A       L  +      L ++L E    N+S
Sbjct: 85  FHNAQHDLKFLG---GKKAQNITCTMKLAQSIPYHILPVSSLTLKTLTEHLTEF--KNVS 139

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVV---HLHALRLQFTEK 170
           K +Q SDW    LSD+QL YA  D +   H+H   L+  +K
Sbjct: 140 KEEQGSDWGQRPLSDQQLHYAKMDPIYLAHIHQKLLELIKK 180


>gi|269794953|ref|YP_003314408.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
 gi|269097138|gb|ACZ21574.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
          Length = 437

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           VF T++A+R+      + GL   + E+LG+ ++K   + DWS   L D  L YAA DV  
Sbjct: 136 VFDTELAARIL--GMERVGLAAVVAEVLGLGLAKEHSAVDWSTRPLPDAWLLYAALDVEV 193

Query: 160 LHALRLQFTEKLQRLGRSDLA 180
           L  LR +  E+L+  G+++ A
Sbjct: 194 LVELRDRMAERLEAAGKTEWA 214


>gi|332290211|ref|YP_004421063.1| ribonuclease D [Gallibacterium anatis UMN179]
 gi|330433107|gb|AEC18166.1| ribonuclease D [Gallibacterium anatis UMN179]
          Length = 377

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           AR+   +A+DTE   +     +L ++QL  G     +D + I   Q      + +L D  
Sbjct: 20  ARHYSVVALDTEFERVRSYYAKLGLIQLYFGADVALIDPLTITDWQP----FIALLADAN 75

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             KI H    DI +    F     P+  T+I +     +    G     +  L + + K 
Sbjct: 76  VLKILHASGEDIEIFHQQFQQIPTPMLDTQIMANFL-GFPQSAGFALLAQHYLQVELDKK 134

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHL 160
              +DW    LS+ QL YAA+DV +L
Sbjct: 135 ASRTDWLKRPLSERQLNYAAADVYYL 160


>gi|317508452|ref|ZP_07966122.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974]
 gi|316253299|gb|EFV12699.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974]
          Length = 470

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   +F T++  R+      + GL   ++ LLG+ ++K  
Sbjct: 126 EWVLHAADQDLPCL-AELGLRPAKLFDTELGGRIA--GFERVGLAALVETLLGVGLAKGH 182

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            ++DWS   L  E L YAA DV  L  +R    E L   G+++ A     ++  R
Sbjct: 183 GAADWSQRPLPPEWLNYAALDVELLLPMREALLEALAEQGKTEWALEEFEYVRMR 237


>gi|83645396|ref|YP_433831.1| ribonuclease D [Hahella chejuensis KCTC 2396]
 gi|83633439|gb|ABC29406.1| ribonuclease D [Hahella chejuensis KCTC 2396]
          Length = 398

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T++A+ L     N+ GL+  +++ LGI + K    SDW+   L+D+Q+QYA  DVV L  
Sbjct: 117 TQVANALLDGELNE-GLQSLVRQNLGIELEKHATRSDWTQRPLTDKQIQYAQEDVVVLWP 175

Query: 163 LRLQFTEKLQRLGRSDLA 180
           L  +  E L+  G+ ++A
Sbjct: 176 LYQKLAEALRLSGKYEIA 193


>gi|15892619|ref|NP_360333.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|15619787|gb|AAL03234.1| ribonuclease D [Rickettsia conorii str. Malish 7]
          Length = 281

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 7/143 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE         +L I+Q+   +  G +D    A    +      +L D    KIFH
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W
Sbjct: 79  APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNW 137

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
               ++ + L YA  DV +L+ +
Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKI 160


>gi|120403469|ref|YP_953298.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1]
 gi|119956287|gb|ABM13292.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1]
          Length = 426

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   ++ T++A RL   Y  +  L   ++ LLG+ ++K  
Sbjct: 112 EWVLHAADQDLPCLA-EIGMRPPSLYDTELAGRLA-NY-ERVNLAAMVQRLLGLQLTKGH 168

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            ++DWS   L  + L YAA DV  L  LR   +E LQ  G+   A     +L
Sbjct: 169 GAADWSKRPLPQDWLNYAALDVEVLVDLRHAISEVLQEQGKEGWAAEEFEYL 220


>gi|157825886|ref|YP_001493606.1| ribonuclease D [Rickettsia akari str. Hartford]
 gi|157799844|gb|ABV75098.1| Ribonuclease D [Rickettsia akari str. Hartford]
          Length = 281

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 7/169 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE         +L I+Q+   +  G +D    A    +      +L D    KIFH
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNVFNKLLEDNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W
Sbjct: 79  APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDICYKLIGITIDKTHQKSNW 137

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
               ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D
Sbjct: 138 LKRPITSDMLNYAMLDVKYLYKIYQELNNIIIRNNLTNKYKTTLSSLLD 186


>gi|320534424|ref|ZP_08034906.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133371|gb|EFW25837.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 424

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKA 134
           E I H    DI  L    G+R   +F T++A+RL      QH GL   ++E LG+ ++K 
Sbjct: 104 EWILHAADQDIPCL-TALGLRADSLFDTELAARL---LGRQHVGLGAVIEETLGLRLAKD 159

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++DWS   L    L YAA DV  L  LR     +L+  G+   A
Sbjct: 160 HAAADWSTRPLPASWLTYAALDVELLIDLRNALATELKAAGKDQWA 205


>gi|91792982|ref|YP_562633.1| ribonuclease D [Shewanella denitrificans OS217]
 gi|91714984|gb|ABE54910.1| ribonuclease D [Shewanella denitrificans OS217]
          Length = 371

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +       RL ++Q   G  T+ +I   A +  +P    +L      K+ H  
Sbjct: 26  LVLDTEFVRTRTYYARLGLIQAFDGK-TLALIDPVAIEDLSP-FWQLLTAPHITKLVHSC 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISKAQQSSDW 140
             D+ V  +    +  P+F ++IA+ L       HGL     ++E L + I K +  +DW
Sbjct: 84  SEDLEVFAHYGHCQPAPLFDSQIAASLAGL---GHGLGYAKLVQECLSVEIDKGESRTDW 140

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               L+D QLQYAA+DV +L+ L     EKL   GR +
Sbjct: 141 MKRPLTDAQLQYAANDVFYLYKLYPLLLEKLNANGRVE 178


>gi|77362412|ref|YP_341986.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877323|emb|CAI89540.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 376

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +        + ++Q+  G+    I  +A  + +  +   +L D    K+FH  
Sbjct: 25  LAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLA--ELSLFDFWQILKDPAVLKVFHSP 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI V     G    P+F T+ A ++     N  G    +K LL I I K++  ++W  
Sbjct: 83  SEDIEVFQKYAGFVPTPLFDTQFALQILGE-GNCMGFALMVKTLLDIEIDKSESRTNWLQ 141

Query: 143 DDLSDEQLQYAASDVVHL 160
             L+++QL+YAA+D  HL
Sbjct: 142 RPLTNKQLEYAAADAYHL 159


>gi|218680574|ref|ZP_03528471.1| ribonuclease D [Rhizobium etli CIAT 894]
          Length = 262

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            ++I K+ + +DWS   LSD+QL+YA +DV HL  + L    +L R GR+   +   + L
Sbjct: 5   NVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEMDIL 64

Query: 188 MDRAELDL 195
             R   DL
Sbjct: 65  EARETYDL 72


>gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40]
 gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40]
          Length = 703

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 47/222 (21%)

Query: 19  YVDAIAVDTETL------GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           Y   + +D ET        L P   ++ +VQ++     + + R    +KN    + +L D
Sbjct: 8   YKKIVGIDIETWDGKKGGSLDPYSGKIALVQIAYDRNNIVLYR--PWEKNFEEALKVLSD 65

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL----------------------- 109
           +   K+ H  +FD+   FY   +   P+F T IAS++                       
Sbjct: 66  KDVLKVGHNLKFDLK-FFYMNNIYPEPIFDTMIASQMIYAGLDEPDEISEVLEALKDDLT 124

Query: 110 --------------TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155
                         T+     H L+  LK  L I + K  Q+S+W  + LS+ Q +YA +
Sbjct: 125 TEEVAIFDVFGKKRTKATKFSHSLQAVLKRELNIFLPKDVQNSNWGGE-LSEAQKEYAIN 183

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           DV +L  L ++  +K++ L   ++      FL     L+L G
Sbjct: 184 DVKYLKDLSIELWKKIKALNIENVFMLEMKFLPVLVMLELTG 225


>gi|319441607|ref|ZP_07990763.1| hypothetical protein CvarD4_07546 [Corynebacterium variabile DSM
           44702]
          Length = 459

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 66/146 (45%), Gaps = 13/146 (8%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRIA-AGQKNAPNLVG 68
           AE  A     +AVDTE        DR  +VQL   G GT  VD   +  AG+  AP L  
Sbjct: 35  AEVLATGSGPVAVDTERASGFRFDDRAWLVQLRRAGAGTHLVDPAVVPDAGELLAPVLND 94

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +        + H    D+  L  T G     +  T+IA RL      Q GL   L+ELLG
Sbjct: 95  L------PWVLHAAHTDLPAL-TTLGWHTPLLHDTQIAGRLL--GFGQIGLAGMLEELLG 145

Query: 129 INISKAQQSSDWSADDLSDEQLQYAA 154
           + ++K +   DWSA  L  + L YAA
Sbjct: 146 VTVAKDKGREDWSARPLPADMLTYAA 171


>gi|269956679|ref|YP_003326468.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
 gi|269305360|gb|ACZ30910.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
          Length = 420

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   VF T++A+RL      + GL   + + LG+ ++K  
Sbjct: 109 EWILHAASQDLPGL-AEHGLRPASVFDTELAARLL--GLERVGLAAVVADTLGLGLAKEH 165

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            + DWS   L  + L+YAA DV  L  +R    E+L   G+S+ A 
Sbjct: 166 SAVDWSTRPLPVDWLRYAALDVEVLGEVRDVLAERLADAGKSEWAA 211


>gi|262166840|ref|ZP_06034571.1| ribonuclease D [Vibrio cholerae RC27]
 gi|262024728|gb|EEY43402.1| ribonuclease D [Vibrio cholerae RC27]
          Length = 284

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE         +L I+Q+   +  G +D    A    +      +L D    KIFH
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAENYCGIID----ALSNVDLNIFNKLLADNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +  F      VF  +IA+ +   +  Q    D   +L GI I K  Q S+W
Sbjct: 79  APREDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLFGIAIDKTHQKSNW 137

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
               ++ + L YA  DV +L+ +
Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKI 160


>gi|117928598|ref|YP_873149.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117649061|gb|ABK53163.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 416

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +AVD E         R  +VQL  PG GT  +D +  A  +     L         E I 
Sbjct: 44  VAVDAERASAYRYGHRAYLVQLRRPGAGTFLIDPLPFANLRPVHEALSTA------EWIV 97

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+R   +F T++A+RL   Y    GL   ++ELLG  ++K     D
Sbjct: 98  HAAAQDLPCL-AELGLRPARLFDTELAARLA-GYPRV-GLAAMVEELLGFRLNKDHARVD 154

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           WS   L +  L+YAA DV  L  LR     +LQR G+
Sbjct: 155 WSRRPLPESWLRYAALDVEVLVELREILHTELQRQGK 191


>gi|91205505|ref|YP_537860.1| ribonuclease D [Rickettsia bellii RML369-C]
 gi|157827220|ref|YP_001496284.1| ribonuclease D [Rickettsia bellii OSU 85-389]
 gi|91069049|gb|ABE04771.1| Ribonuclease D [Rickettsia bellii RML369-C]
 gi|157802524|gb|ABV79247.1| Ribonuclease D [Rickettsia bellii OSU 85-389]
          Length = 286

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 3/167 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+     ++ I  I     N  N   +L+D    KIFH  
Sbjct: 23  LSIDTEFERRYTYYAKLSIIQVKAEGCSIIIDAINNLDLNVFN--KLLIDNNIIKIFHAP 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D  + +  F      +F  ++A+ +     +Q    D   +L  INI K  Q S+W  
Sbjct: 81  REDFEIFYNLFKTLPSNIFDVQVAANVC-GLGSQLSYDDICYKLFKINIDKTHQKSNWLK 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
             ++++ L YA  DV +L  +  Q  + +     ++   S   FL +
Sbjct: 140 RPITEDMLNYAFLDVEYLDKIYKQLNKIILDNNLTNQYQSMLQFLFN 186


>gi|157803677|ref|YP_001492226.1| ribonuclease D [Rickettsia canadensis str. McKiel]
 gi|157784940|gb|ABV73441.1| Ribonuclease D [Rickettsia canadensis str. McKiel]
          Length = 284

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE         +L I+Q+   +  G +D    A    +      +L D    KIFH
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAENYCGIID----ALSNVDLNIFNKLLADNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +  F      VF  +IA+ +   +  Q    D   +L GI I K  Q S+W
Sbjct: 79  APREDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLFGIAIDKTHQKSNW 137

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
               ++ + L YA  DV +L+ +
Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKI 160


>gi|329945641|ref|ZP_08293374.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528644|gb|EGF55609.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 372

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKA 134
           E I H    DI  L    G+R   +F T++A+RL      QH GL   ++E LG+ ++K 
Sbjct: 52  EWILHAADQDIPCL-TALGLRSASLFDTELAARL---LGRQHVGLGAVIEETLGLRLAKD 107

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             ++DWS   L    L YAA DV  L  LR     +L+  G+S  A 
Sbjct: 108 HAAADWSTRPLPASWLIYAALDVELLIDLRDALAAELETDGKSQWAA 154


>gi|254786713|ref|YP_003074142.1| ribonuclease D [Teredinibacter turnerae T7901]
 gi|237686111|gb|ACR13375.1| ribonuclease D [Teredinibacter turnerae T7901]
          Length = 393

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 1/112 (0%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V     G+  + +  T+IAS L   Y    G    +  +LG  + K + 
Sbjct: 84  KVLHSCSEDLEVFHRFLGIVPKHMLDTQIASALC-GYGFSVGFGKLVHAVLGEELPKEET 142

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            SDW    LS  Q+ YAA DV +L+ L      KL+ LGR       C  ++
Sbjct: 143 RSDWLHRPLSSAQIDYAAIDVEYLYKLASILVLKLKNLGRLTWVAEDCEAML 194


>gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H]
 gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H]
          Length = 1861

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 24   AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA--PNLVGMLVDEKREKIFHY 81
             +D ET GL    +++ ++Q++  +  V I  +    K +    L  +L +EK  KI   
Sbjct: 1313 GLDIETTGLEVFDEKIRLIQIAVENYPVIIYDMFNITKESILTGLREILKNEKVVKIIQN 1372

Query: 82   GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139
            G+FD   L +    +V  +F T IAS+L     N +G K N  +++ L + + K QQ+S 
Sbjct: 1373 GKFDAKFLMHN-NFQVDNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQQNSV 1431

Query: 140  WSADDLSDEQLQYAASD 156
            W+   L++ QL YAA D
Sbjct: 1432 WNNSLLNNNQLFYAARD 1448


>gi|223939512|ref|ZP_03631388.1| 3'-5' exonuclease [bacterium Ellin514]
 gi|223891784|gb|EEF58269.1| 3'-5' exonuclease [bacterium Ellin514]
          Length = 372

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 12/169 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGML-VDEKREKIF 79
           +A+DTE   L    +++C++Q++   GD  +D +       +  NL  +L      E I 
Sbjct: 37  VALDTEADSLHAYPEKVCLLQITTPLGDELIDPL-------SGINLDPLLDTFGGHELIM 89

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H   +D+ +L        + +F T +ASRL      Q GL   +   LG+ + K  Q +D
Sbjct: 90  HGSDYDLRLLRKHHAFVPKAIFDTMLASRLL--GHTQFGLVHLVAHYLGVTLEKGSQKAD 147

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           W+   L+     YA +D  +L  L  +    L+  GR       C  L+
Sbjct: 148 WAKRPLTPRMEAYARNDTHYLKHLADRLKSDLEVKGRLGWHQELCARLI 196


>gi|51473650|ref|YP_067407.1| ribonuclease D [Rickettsia typhi str. Wilmington]
 gi|51459962|gb|AAU03925.1| ribonuclease D [Rickettsia typhi str. Wilmington]
          Length = 281

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 7/144 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-QKNAPNLVGMLVDEKREKIFH 80
           ++++DTE         +L I+Q+   +G   II   +    N  N   +L+D    KIFH
Sbjct: 22  SLSIDTEFERRYTYYAQLSIIQVK-AEGYCGIIDTLSNLDLNIFN--KLLIDNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL-KELLGINISKAQQSSD 139
             R D+ + +  F      +F  +IA+ +      Q    DNL  +L+GI I K  Q S+
Sbjct: 79  APREDLEIFYNLFKTLPSNIFDIQIAASICGF--GQQLSYDNLCYKLIGITIDKTHQKSN 136

Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163
           W    ++ + L YA  DV +L+ +
Sbjct: 137 WLKRPITSDMLNYAILDVEYLYKI 160


>gi|296129572|ref|YP_003636822.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
 gi|296021387|gb|ADG74623.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
          Length = 417

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   VF T++A+RL      + GL   + + LG+ ++K  
Sbjct: 105 EWVLHAASQDLPGLAEQ-GMRPSRVFDTELAARLL--GMERVGLAAVVADTLGLGLAKEH 161

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L  E L+YAA DV  L  +R    E+L   G+++ A
Sbjct: 162 SAVDWSTRPLPTEWLRYAALDVEVLVEVRQVLAERLAVSGKAEWA 206


>gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans]
          Length = 741

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +AVD E       +   C++QLS    D  VD++R+   + +   L  + +D    K+FH
Sbjct: 241 VAVDLEHHDFRSFQGITCLMQLSTRSEDYIVDVLRL---RSHMHRLNRVFLDTNILKVFH 297

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             + D+  L   FG+ V  +F T IA    +T    H L   +    G+ + K  Q++DW
Sbjct: 298 GAKEDVRWLQKDFGLYVANMFDTGIA---LQTLHMPHSLAFAVDHFCGVRLDKKYQTADW 354

Query: 141 SADDLSDEQLQYAASDVVHL 160
               +  E + YA  D  +L
Sbjct: 355 RIRPVPSEMIHYARQDTHYL 374


>gi|157828635|ref|YP_001494877.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933351|ref|YP_001650140.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
 gi|157801116|gb|ABV76369.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908438|gb|ABY72734.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
          Length = 281

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 7/169 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +++DTE         +L I+Q+   +  G +D    A    +      +L D    KIFH
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIID----ALSNLDLNIFNKLLADNNITKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S W
Sbjct: 79  APREDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSHW 137

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
               ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D
Sbjct: 138 LKRPITSDMLNYAMLDVEYLYKIYKELNNIIVRNNLTNKYQTTLSALLD 186


>gi|323700422|ref|ZP_08112334.1| 3'-5' exonuclease [Desulfovibrio sp. ND132]
 gi|323460354|gb|EGB16219.1| 3'-5' exonuclease [Desulfovibrio desulfuricans ND132]
          Length = 204

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%)

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155
           R +P     ++S   +     HGL++    LLG  ISK+ Q S+W+ D LS +Q+ YAA+
Sbjct: 127 RFKPSGFVDLSSITAKYNLQTHGLRNMAANLLGFRISKSAQCSNWAKDKLSRQQVLYAAT 186

Query: 156 DVVHLHALRLQFTE 169
           D      L L   E
Sbjct: 187 DAWISRELYLALEE 200


>gi|284990407|ref|YP_003408961.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160]
 gi|284063652|gb|ADB74590.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160]
          Length = 418

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 18/174 (10%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLV-- 67
           AE  A     +AVD E         R  +VQL     G G +D I +       P+L   
Sbjct: 47  AEALAAGSGPVAVDAERASGYRYGQRAYLVQLRRVGTGTGLIDPIPL-------PDLSVV 99

Query: 68  -GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
              +VD   E + H    D+  L     V  R +F T++A+RL      + GL   ++ L
Sbjct: 100 QSAIVDA--EWVLHAASQDLPSLAEVGLVPAR-LFDTELAARLA--GLPRVGLGAVVESL 154

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           LG  + K   ++DWS   L +E L YAA DV  L  LR      L+  G+++ A
Sbjct: 155 LGYRLEKGHSAADWSTRPLPEEWLVYAALDVEVLVDLRDALAAVLEEQGKTEWA 208


>gi|145594075|ref|YP_001158372.1| 3'-5' exonuclease [Salinispora tropica CNB-440]
 gi|145303412|gb|ABP53994.1| 3'-5' exonuclease [Salinispora tropica CNB-440]
          Length = 451

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R R +F T++A+RL      + GL    + LLG ++ K  
Sbjct: 134 EWVLHAASQDLYCL-AELGLRPRRLFDTELAARLA--GFERVGLAALTENLLGFSLEKHH 190

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            ++DWS+  L +  L YAA DV  L  LR     +L R G+
Sbjct: 191 SAADWSSRPLPESWLTYAALDVELLVELRDALDAELTRQGK 231


>gi|289671331|ref|ZP_06492406.1| ribonuclease D [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 293

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+       GV  RP+F T+IA+ L          K  ++E+ G  ++K + 
Sbjct: 5   KVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK-LVQEVTGTLLTKGET 63

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLG 175
            SDW    LS  QL+YAA DV +L A+  + T +L    RLG
Sbjct: 64  RSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQDRLG 105


>gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
 gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
          Length = 373

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           AA   DA+ VDTE +       ++ +VQL        GT  +I     +  AP L  +  
Sbjct: 18  AAIGCDAVMVDTEFMRRNTFYPQVALVQLCFCGGGATGTAWMIDPLKIEDPAP-LANLFK 76

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D    KI H    D+ V     GV   P+F T+ A+ L        G +  + EL   ++
Sbjct: 77  DAGVIKILHSASEDLEVFQRWLGVLPLPLFDTQKAAALV-GLDFGLGYRSMVLELCNEDL 135

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            K +  SDW    L++ Q  YAA DV+ L        E+   + R D
Sbjct: 136 PKGETRSDWLQRPLTESQCHYAAQDVIWLLDAYQIIAERCHSMQRYD 182


>gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis]
          Length = 827

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRIAAGQK--NAPNLVGMLVDEKREK 77
           A AVD E           C++Q+S  D    VD   I       N P      VD    K
Sbjct: 274 AFAVDLEHNSYRSYYGLTCLLQISTRDTDYIVDPFPIWHEMYILNEP-----FVDPNIVK 328

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    DI  L   FG+ V  +F T  A  +      Q  LK  +KEL+G+N+ K+ Q+
Sbjct: 329 VMHGSSQDIQWLQRDFGIYVVNLFDTYHAMEVLEM--PQRSLKFLVKELVGVNLDKSYQT 386

Query: 138 SDWSADDLSDEQLQYAASDVVHL 160
           +DW    L  + L YA SD  +L
Sbjct: 387 ADWRIRPLGSKMLAYARSDSHYL 409


>gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis]
          Length = 669

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 18/145 (12%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E       +   C++QLS    D  VD + + A   N   L  +  + K  K+FH
Sbjct: 139 IAVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTLALRA---NLNILNQVFTNPKIVKVFH 195

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLKELLGINISKAQ 135
               DI  L   FGV V  +F T  A+R     L+R Y  +H  K        +   K  
Sbjct: 196 GADQDIKWLQRDFGVYVVNLFDTGQAARVLELGLSREYLLKHYCK--------VESDKKY 247

Query: 136 QSSDWSADDLSDEQLQYAASDVVHL 160
           Q +DW    LS + L+YA  D  +L
Sbjct: 248 QKADWRERPLSKDMLKYAQEDTHYL 272


>gi|319426180|gb|ADV54254.1| ribonuclease D [Shewanella putrefaciens 200]
          Length = 369

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +       +L ++Q   G     I  +A    +   L  +L +    K+ H  
Sbjct: 26  LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAKLWALLANPNIIKLVHSC 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  +DW  
Sbjct: 84  SEDLEVFAHYGQCQPVPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 142

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L++ QL YAA+DV++LH L  Q   KL   GR
Sbjct: 143 RPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGR 176


>gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 681

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           V+  AVD E       +   C++Q+S    D  VD  ++       P+L  +  D K++K
Sbjct: 227 VEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKL--WDHIGPHLRELFKDPKKKK 284

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    DI  L   FG+ V  +F T  ASR+ +    +  L+  LK   G+   K  Q+
Sbjct: 285 VMHGADHDIIWLQRDFGIYVCNLFDTGQASRVLK--LERKSLEFLLKHYCGVAADKQYQN 342

Query: 138 SDWSADDLSDEQLQYAASDVVHL 160
           +DW    L D   +YA  D  +L
Sbjct: 343 ADWRIRPLPDVMTRYAREDTHYL 365


>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa]
 gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa]
          Length = 855

 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLVGMLVDE 73
           R V+  AVD E       +   C++Q+S    D  VD +  RI  G    P L  +  D 
Sbjct: 249 RGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVG----PYLREVFKDP 304

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            + K+ H    DI  L   FG+ +  +F T  ASR+ +   N   L+  L    G+   K
Sbjct: 305 AKRKVMHGADRDIVWLQRDFGIYICNLFDTGQASRVLKLERN--SLEYLLHHFCGVTAKK 362

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160
             Q+++W    L DE ++YA  D  +L
Sbjct: 363 EYQNAEWRLRPLPDEMIRYAREDTHYL 389


>gi|309811737|ref|ZP_07705515.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
 gi|308434349|gb|EFP58203.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
          Length = 459

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R R +F T++ SRL      + GL    +  +G+ ++K  
Sbjct: 129 EWVLHAATQDLPCL-KALGLRPRKLFDTELGSRLA--GLPRVGLAAVTEHFVGVTLAKEH 185

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + DWS   L  + L YAA DV  L  +R      L+  G+++ A      L+D
Sbjct: 186 SAVDWSTRPLPHDWLVYAALDVERLVEVRDALAADLEAQGKAEWARQEFEALLD 239


>gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 341

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 40  CIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           C++Q+S    D  VD +++        +L  + +D  ++K+ H    DI  L   FG+ +
Sbjct: 31  CLMQISTRTEDFIVDTLKLR--DHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIYI 88

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
             +F T  ASR+ +    ++ L+  L+   G+  +K  Q++DW A  L D  ++Y   D 
Sbjct: 89  CNMFDTGQASRVLK--MERYSLQHLLQHFCGVTANKEYQNADWRARPLPDVMIKYGREDT 146

Query: 158 VHL 160
            +L
Sbjct: 147 HYL 149


>gi|119470938|ref|ZP_01613522.1| putative RNase D, processing tRNA precursors [Alteromonadales
           bacterium TW-7]
 gi|119445960|gb|EAW27240.1| putative RNase D, processing tRNA precursors [Alteromonadales
           bacterium TW-7]
          Length = 376

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 10/171 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +        + ++Q+  G+    I  +A  + +  +   +L D    K+ H  
Sbjct: 25  LAIDTEFMRRRTLYPEVALIQVFDGEHLALIDPLA--ELSLFDFWQVLKDPAVLKVLHSP 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI V     G    P+F T+ A +L     N  G    +K LLGI I K++  ++W  
Sbjct: 83  SEDIEVFQKYAGFVPAPLFDTQFALQLLGE-GNCMGFALMVKTLLGIEIDKSESRTNWLQ 141

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
             L+ +QL YAA+D  HL      F   + R+  +DL       ++D +EL
Sbjct: 142 RPLTTKQLDYAAADTFHLLPC---FELIIDRINNADL----FEIVLDESEL 185


>gi|170726464|ref|YP_001760490.1| ribonuclease D [Shewanella woodyi ATCC 51908]
 gi|169811811|gb|ACA86395.1| ribonuclease D [Shewanella woodyi ATCC 51908]
          Length = 369

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 5/166 (3%)

Query: 13  AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A+  ++Y ++  + +DTE +       RL ++Q   G     I  +A    +      +L
Sbjct: 14  AKLVSQYRESQLLVLDTEFVRTRTFYARLGLIQAYDGKTLALIDPVAVS--DLSGFWSLL 71

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            +     I H    D+ V       +   +F ++IA+ L   + +  G    +++ L I 
Sbjct: 72  TEPSITTILHSCSEDLEVFARNGQCQPVKLFDSQIAAALC-GFGHGLGYAKLVEQTLNIP 130

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           + K +  +DW    LS+ QL YAA+DV +L+ L  Q  EKL+   R
Sbjct: 131 LDKGESRTDWMKRPLSEAQLNYAANDVYYLYQLYPQLVEKLEEQNR 176


>gi|186685790|ref|YP_001868986.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
 gi|186468242|gb|ACC84043.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
          Length = 306

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 19/154 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVG-----MLVD 72
           +  + +DTE      R  RL ++Q+  +P D + D + +     + PN++      ++++
Sbjct: 20  IKTLWIDTEVADYKSRNPRLSLIQVLDNPQDMSGDRVYLL-DVLDQPNIIAEFIEKIMIN 78

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-----KIASRLTRTYTNQHGLKDNLKELL 127
              EK+FH   +D+  L      + + + CT     KI   +      Q  LK     L 
Sbjct: 79  SAIEKVFHNASYDLKFLG---NKKAKNITCTLEMVKKIPYHILPLPNYQ--LKTIATALC 133

Query: 128 GIN-ISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             N I K +Q+SDW    L++EQ++YA  D ++L
Sbjct: 134 SFNNIDKQEQTSDWGKRPLTEEQIEYAYLDCIYL 167


>gi|152965548|ref|YP_001361332.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
 gi|151360065|gb|ABS03068.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
          Length = 427

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   +F T++ SR+      + GL   ++ELLG+ ++K  
Sbjct: 102 EWVLHAANQDLPCL-AEVGMRPTRLFDTELGSRIA--GLPRVGLGAVVEELLGLRLAKEH 158

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L YAA DV  L  +R    E+L   G+ + A
Sbjct: 159 SAVDWSTRPLPEPWLTYAALDVEVLVQVRDALAERLAAQGKLEWA 203


>gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group]
          Length = 599

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 10/163 (6%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLVGMLVDEKR 75
           V+  AVD E       +   C++Q+S    D  VD +  RI  G      L     D  +
Sbjct: 163 VNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIGLY----LKEHFKDPTK 218

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    DI  L   F + V  +F T  ASR+ +   N   L+  L+   G+  +K  
Sbjct: 219 RKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQMERN--SLEHLLRHFCGVTANKEY 276

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           Q++DW +  LSDE ++YA  D  +L  +      +LQ+   SD
Sbjct: 277 QNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQKESTSD 319


>gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 10/163 (6%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDII--RIAAGQKNAPNLVGMLVDEKR 75
           V+  AVD E       +   C++Q+S    D  +D +  RI  G      L  +  D  +
Sbjct: 52  VNEFAVDLEHNQYRSFQGLTCLMQISTRSEDFIIDTLKLRIYIGSY----LKEIFKDPTK 107

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    DI  L   F V V  +F T  ASR+ +   N   L+  L    G+  +K  
Sbjct: 108 RKVMHGADRDIMWLQRDFRVYVCNLFDTGQASRVLQMERN--SLEHLLHHFCGVTANKIY 165

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           Q++DW +  LSDE ++YA  D  +L  +      +LQR   S+
Sbjct: 166 QNADWRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQRESTSE 208


>gi|126174091|ref|YP_001050240.1| ribonuclease D [Shewanella baltica OS155]
 gi|125997296|gb|ABN61371.1| ribonuclease D [Shewanella baltica OS155]
          Length = 369

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +       +L ++Q   G     I  +A    +      +L D    K+ H  
Sbjct: 26  LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAQFWALLSDPNIVKLVHSC 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  +DW  
Sbjct: 84  SEDLEVFAHYGKCQPTPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 142

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L++ QL YAA+DV++L+ L  Q   KL   GR
Sbjct: 143 RPLTEAQLSYAANDVLYLYQLYPQLEAKLSAQGR 176


>gi|157962268|ref|YP_001502302.1| ribonuclease D [Shewanella pealeana ATCC 700345]
 gi|157847268|gb|ABV87767.1| ribonuclease D [Shewanella pealeana ATCC 700345]
          Length = 369

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 9/170 (5%)

Query: 13  AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A    +Y DA  + +DTE +       RL ++Q   G     I  +A    N      +L
Sbjct: 14  AALVEQYQDADLLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPLAVS--NLELFWQLL 71

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLG 128
             E   K+ H    D+ V       +   +F ++IA+ L       HGL     +++ L 
Sbjct: 72  SKESSVKLLHSCSEDLEVFARYGNCQPTNLFDSQIAAGLAGM---GHGLGYAKLVEQTLE 128

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +++ K +  +DW    L++ QL YAA+DV +L+ L  Q  + L+  GR D
Sbjct: 129 VSLDKGESRTDWLKRPLTEAQLNYAANDVYYLYKLYPQLVKLLEEQGRLD 178


>gi|331696705|ref|YP_004332944.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190]
 gi|326951394|gb|AEA25091.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190]
          Length = 394

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKN-APNLVGMLVDEKREKI 78
           +AVD E         R  +VQL     G   +D I + +     +P L G       E +
Sbjct: 34  VAVDAERASGFRYSQRAYLVQLRRAGAGSALIDPIPLGSDLSALSPALTGP------EWV 87

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L    G+    +F T++A RL      + GL   +++LLG+ + K   ++
Sbjct: 88  LHAASQDLPCL-AEVGLAPTSLFDTELAGRLA--GLPRVGLGPMVEQLLGLALEKGHGAA 144

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           DWS   L ++ L YAA DV  L  LR      L   G+S+ A 
Sbjct: 145 DWSRRPLPEDWLVYAALDVEVLIELRDLLAGMLAEQGKSEFAA 187


>gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 906

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 10/125 (8%)

Query: 40  CIVQLSP--GDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95
           C++Q+S    D  VD +++    +N    NL  +  D  ++K+ H    DI  L   FG+
Sbjct: 305 CLMQISTRTEDFIVDTLKL----RNCLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGI 360

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155
            V  +F T  ASR+ +   +++ L+  L+   G+  +K  QS+DW    L DE  +YA  
Sbjct: 361 YVCNLFDTGQASRILQM--DRNSLEHLLQYFCGVTANKEYQSADWRLRPLPDEMTKYARE 418

Query: 156 DVVHL 160
           D  +L
Sbjct: 419 DTHYL 423


>gi|225439201|ref|XP_002269553.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 912

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 14  ECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLV 67
           E AA+   V+  AVD E       +   C++Q+S    D  VD +  RI  G    P L 
Sbjct: 238 ELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHVG----PYLR 293

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +  D  ++K+ H    DI  L   FG+ +  +F T  ASR+ +   N   L+  L    
Sbjct: 294 EVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQASRVLKLERN--SLEHLLHHYC 351

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           G+  +K  Q+ DW    L  E L+YA  D  +L
Sbjct: 352 GVTANKEYQNGDWRLRPLPHEMLRYAREDTHYL 384


>gi|312196135|ref|YP_004016196.1| 3'-5' exonuclease [Frankia sp. EuI1c]
 gi|311227471|gb|ADP80326.1| 3'-5' exonuclease [Frankia sp. EuI1c]
          Length = 440

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 96  EWVLHAASQDLPCL-AELGLRPTTLFDTELAGRLL--GYERVGLGMMVERVLGFGLEKGH 152

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L +  L+YAA DV  L  LR     +L   G+ D A
Sbjct: 153 SAADWSTRPLPEPWLRYAALDVELLVELRDALAVELAETGKLDFA 197


>gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group]
 gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica
           Group]
 gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group]
 gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group]
          Length = 600

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLVGMLVDE 73
           + V+  AVD E       +   C++Q+S    D  VD +  RI  G      L     D 
Sbjct: 162 KSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIYIGLY----LKEHFKDP 217

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            + K+ H    DI  L   F + V  +F T  ASR+ +   N   L+  L+   G+  +K
Sbjct: 218 TKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQMERN--SLEHLLRHFCGVTANK 275

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             Q++DW +  LSDE ++YA  D  +L  +      +LQ+   SD
Sbjct: 276 EYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQKESTSD 320


>gi|308177768|ref|YP_003917174.1| ribonuclease D [Arthrobacter arilaitensis Re117]
 gi|307745231|emb|CBT76203.1| putative ribonuclease D [Arthrobacter arilaitensis Re117]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+  L +  G+    +F T++A RL      +  L   + ELLG+ ++K   +
Sbjct: 109 ILHAATQDLPCL-HELGMSPTALFDTELAGRLA--GFPRVSLGTMVGELLGLQLAKEHSA 165

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            DWS   L +  L YAA DV  L  LR   T  L+  G+ + A
Sbjct: 166 VDWSTRPLPESWLNYAALDVEVLEELRQAITATLEEQGKLEFA 208


>gi|125558189|gb|EAZ03725.1| hypothetical protein OsI_25856 [Oryza sativa Indica Group]
          Length = 501

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           +ELLG+ +SK  Q SDWS   LS+ Q+QYAASD  +L  +   F +K++  G+
Sbjct: 188 EELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQKIRTEGK 240


>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera]
          Length = 901

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 14  ECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDII--RIAAGQKNAPNLV 67
           E AA+   V+  AVD E       +   C++Q+S    D  VD +  RI  G    P L 
Sbjct: 227 ELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHVG----PYLR 282

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +  D  ++K+ H    DI  L   FG+ +  +F T  ASR+ +   N   L+  L    
Sbjct: 283 EVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQASRVLKLERN--SLEHLLHHYC 340

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           G+  +K  Q+ DW    L  E L+YA  D  +L
Sbjct: 341 GVTANKEYQNGDWRLRPLPHEMLRYAREDTHYL 373


>gi|153000417|ref|YP_001366098.1| ribonuclease D [Shewanella baltica OS185]
 gi|160875014|ref|YP_001554330.1| ribonuclease D [Shewanella baltica OS195]
 gi|217973594|ref|YP_002358345.1| ribonuclease D [Shewanella baltica OS223]
 gi|151365035|gb|ABS08035.1| ribonuclease D [Shewanella baltica OS185]
 gi|160860536|gb|ABX49070.1| ribonuclease D [Shewanella baltica OS195]
 gi|217498729|gb|ACK46922.1| ribonuclease D [Shewanella baltica OS223]
 gi|315267246|gb|ADT94099.1| ribonuclease D [Shewanella baltica OS678]
          Length = 369

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +       +L ++Q   G     I  +A    +      +L D    K+ H  
Sbjct: 26  LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAQFWALLSDPNIIKLVHSC 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  +DW  
Sbjct: 84  SEDLEVFAHYGKCQPTPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 142

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L++ QL YAA+DV++L+ L  Q   KL   GR
Sbjct: 143 RPLTEAQLSYAANDVLYLYQLYPQLEAKLSAQGR 176


>gi|262279001|ref|ZP_06056786.1| ribonuclease D [Acinetobacter calcoaceticus RUH2202]
 gi|262259352|gb|EEY78085.1| ribonuclease D [Acinetobacter calcoaceticus RUH2202]
          Length = 374

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 72  QQNIFHACGEDIDLIYHYADQEDLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLDI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV+++  L     E+L++ G  D     C+ L
Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYIMKLAHHIQEQLKQKGLYDYVLEDCSSL 184


>gi|229589039|ref|YP_002871158.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
 gi|229360905|emb|CAY47765.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
          Length = 377

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE + +        ++Q+  GDG    +       N   L  +L +    K+ H  
Sbjct: 27  VALDTEFMRVDTFYPIAGLIQI--GDGVRAYLIDPLTIDNWQPLAALLENPAVIKVVHAC 84

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGINISKAQQSSD 139
             D+ VL    G    P+F T++A+     Y N     G    ++ +L I + K +  SD
Sbjct: 85  SEDLEVLLRLTGSLPVPLFDTQLAA----AYLNLGFSMGYSRLVQAVLDIELPKGETRSD 140

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           W    LS+ Q+ YAA D VHL  +  +   +L
Sbjct: 141 WLQRPLSETQISYAAEDAVHLAEVYTRLRPRL 172


>gi|254514489|ref|ZP_05126550.1| ribonuclease D [gamma proteobacterium NOR5-3]
 gi|219676732|gb|EED33097.1| ribonuclease D [gamma proteobacterium NOR5-3]
          Length = 372

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 7/140 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVDTE +        + ++QL   D    +D +++     +   L  ++ D    K+ H
Sbjct: 25  IAVDTEFMRRNTYYPHIALLQLCSDDHAWLIDPLKVT----DLDGLRALMTDTGCWKVLH 80

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+ V  +  GV   P+  T+ A+ L        G +  ++ LLG+ + K +  SDW
Sbjct: 81  SCSEDLEVFRHWLGVVPSPLIDTQRATALLGKGFG-LGYRALIELLLGVELDKGETRSDW 139

Query: 141 SADDLSDEQLQYAASDVVHL 160
               LSD Q  YAA DV+ L
Sbjct: 140 LKRPLSDSQCHYAALDVLKL 159


>gi|158316934|ref|YP_001509442.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
 gi|158112339|gb|ABW14536.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
          Length = 499

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R + +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 135 EWVLHAASQDLPCL-AELGLRPKTLFDTELAGRLL--GYERVGLGAMVERVLGFGLEKGH 191

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            ++DWS   L +  L+YAA DV  L  LR Q   +L
Sbjct: 192 SAADWSNRPLPEPWLRYAALDVELLVELRDQLESEL 227


>gi|118467912|ref|YP_887109.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
 gi|118169199|gb|ABK70095.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
          Length = 415

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   ++ T++A RL      +  L   ++ LLG+ + K  
Sbjct: 105 EWVLHAADQDLPCL-AEIGLRPGKLYDTELAGRLA--GFERVNLAAMVQRLLGLQLMKGH 161

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L DE L YAA DV  L  LR      L+  G+++ A
Sbjct: 162 GAADWSKRPLPDEWLNYAALDVEVLLELRHAIAAVLEEQGKTEWA 206


>gi|115471903|ref|NP_001059550.1| Os07g0452400 [Oryza sativa Japonica Group]
 gi|113611086|dbj|BAF21464.1| Os07g0452400 [Oryza sativa Japonica Group]
          Length = 501

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           +ELLG+ +SK  Q SDWS   LS+ Q+QYAASD  +L  +   F +K++  G+
Sbjct: 188 EELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQKIRTEGK 240


>gi|299770307|ref|YP_003732333.1| ribonuclease D [Acinetobacter sp. DR1]
 gi|298700395|gb|ADI90960.1| ribonuclease D [Acinetobacter sp. DR1]
          Length = 374

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 72  QQNIFHACGEDIDLIYHYADQEDLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLDI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV+++  L     E+L++ G  D     C+ L
Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYIMKLAHHIQEQLKQKGLYDYVLEDCSSL 184


>gi|226366248|ref|YP_002784031.1| ribonuclease [Rhodococcus opacus B4]
 gi|226244738|dbj|BAH55086.1| putative ribonuclease [Rhodococcus opacus B4]
          Length = 428

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTV--DIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +AVD E         R  +VQL   G GTV  D I  AA       ++  L     E I 
Sbjct: 55  LAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAPLAEVINPL-----EWIL 109

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+    +F T++A RL      + GL   ++  LG  + K   ++D
Sbjct: 110 HSADQDLPGL-AEIGLAPATLFDTELAGRLA--GFERVGLAAIVERTLGFELRKGHGAAD 166

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           WS   L D  L YAA DV  L  LR     +L   G+SD A 
Sbjct: 167 WSKRPLPDTWLNYAALDVEVLVELRNAMAAELGEQGKSDWAA 208


>gi|326773241|ref|ZP_08232524.1| ribonuclease D [Actinomyces viscosus C505]
 gi|326636471|gb|EGE37374.1| ribonuclease D [Actinomyces viscosus C505]
          Length = 424

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKA 134
           E I H    DI  L    G++   +F T++A+RL      QH GL   ++E LG+ ++K 
Sbjct: 104 EWILHAADQDIPCL-TARGLKAASLFDTELAARL---LGRQHVGLGAVIEETLGLRLAKD 159

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++DWS   L    L YAA DV  L  LR     +L+  G+   A
Sbjct: 160 HAAADWSTRPLPTSWLTYAALDVELLIDLREALATELEAAGKDQWA 205


>gi|34394896|dbj|BAC84412.1| unknown protein [Oryza sativa Japonica Group]
          Length = 501

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           +ELLG+ +SK  Q SDWS   LS+ Q+QYAASD  +L  +   F +K++  G+
Sbjct: 188 EELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQKIRTEGK 240


>gi|317125038|ref|YP_004099150.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043]
 gi|315589126|gb|ADU48423.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043]
          Length = 418

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+ V     G++ R +F T++  RL      + GL   ++  LG+ ++K  
Sbjct: 101 EWILHAATHDL-VCLAEVGLQPRVLFDTELGGRLA--GLPRVGLGAMVEHYLGLQLAKEH 157

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            + DWS   L +  L+YAA DV  L  LR      L+R G++  A      L+
Sbjct: 158 SAVDWSIRPLPEPWLRYAALDVEVLVDLRHAVHADLERQGKAGWAAEEFQSLL 210


>gi|15609818|ref|NP_217197.1| hypothetical protein Rv2681 [Mycobacterium tuberculosis H37Rv]
 gi|15842219|ref|NP_337256.1| ribonuclease D, putative [Mycobacterium tuberculosis CDC1551]
 gi|148662522|ref|YP_001284045.1| putative ribonuclease D [Mycobacterium tuberculosis H37Ra]
 gi|148823871|ref|YP_001288625.1| hypothetical protein TBFG_12696 [Mycobacterium tuberculosis F11]
 gi|253798237|ref|YP_003031238.1| hypothetical protein TBMG_01292 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232787|ref|ZP_04926114.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis C]
 gi|254365342|ref|ZP_04981387.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis str. Haarlem]
 gi|289444223|ref|ZP_06433967.1| conserved alanine rich protein [Mycobacterium tuberculosis T46]
 gi|289448336|ref|ZP_06438080.1| conserved alanine rich protein [Mycobacterium tuberculosis CPHL_A]
 gi|289553533|ref|ZP_06442743.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 605]
 gi|289575379|ref|ZP_06455606.1| conserved alanine rich protein [Mycobacterium tuberculosis K85]
 gi|289746482|ref|ZP_06505860.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289751333|ref|ZP_06510711.1| conserved alanine rich protein [Mycobacterium tuberculosis T92]
 gi|289754783|ref|ZP_06514161.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308369826|ref|ZP_07419200.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu002]
 gi|308372367|ref|ZP_07428406.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu004]
 gi|308373474|ref|ZP_07432469.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu005]
 gi|308377095|ref|ZP_07441113.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu008]
 gi|308405939|ref|ZP_07494488.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu012]
 gi|2181972|emb|CAB09492.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium
           tuberculosis H37Rv]
 gi|13882508|gb|AAK47070.1| ribonuclease D, putative [Mycobacterium tuberculosis CDC1551]
 gi|124601846|gb|EAY60856.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis C]
 gi|134150855|gb|EBA42900.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506674|gb|ABQ74483.1| putative ribonuclease D [Mycobacterium tuberculosis H37Ra]
 gi|148722398|gb|ABR07023.1| conserved alanine rich protein [Mycobacterium tuberculosis F11]
 gi|253319740|gb|ACT24343.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289417142|gb|EFD14382.1| conserved alanine rich protein [Mycobacterium tuberculosis T46]
 gi|289421294|gb|EFD18495.1| conserved alanine rich protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438165|gb|EFD20658.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 605]
 gi|289539810|gb|EFD44388.1| conserved alanine rich protein [Mycobacterium tuberculosis K85]
 gi|289687010|gb|EFD54498.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289691920|gb|EFD59349.1| conserved alanine rich protein [Mycobacterium tuberculosis T92]
 gi|289695370|gb|EFD62799.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308326264|gb|EFP15115.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu002]
 gi|308333435|gb|EFP22286.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu004]
 gi|308337502|gb|EFP26353.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu005]
 gi|308348930|gb|EFP37781.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu008]
 gi|308365086|gb|EFP53937.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu012]
 gi|323718676|gb|EGB27838.1| alanine rich protein [Mycobacterium tuberculosis CDC1551A]
 gi|326904295|gb|EGE51228.1| conserved alanine rich protein [Mycobacterium tuberculosis W-148]
 gi|328458009|gb|AEB03432.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 438

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+ ++K  
Sbjct: 109 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 165

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 166 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 211


>gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 586

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKAQQS 137
           H  +FD+  L   F V  + VF T IAS++     N  +H L      L    + K  Q+
Sbjct: 85  HNLKFDLKFLATNFDVYPKVVFDTFIASKILAKGDNSQKHSLSAVAVRLTDEEVDKTYQT 144

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           S W  ++L+ EQ++Y+A D+     LR  F E++ RL  
Sbjct: 145 SPWWVENLTKEQIEYSAKDI---EVLRSIFREQVVRLNE 180


>gi|215428107|ref|ZP_03426026.1| hypothetical protein MtubT9_17623 [Mycobacterium tuberculosis T92]
 gi|297635289|ref|ZP_06953069.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN 4207]
          Length = 416

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+ ++K  
Sbjct: 87  EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 143

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 144 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 189


>gi|304411369|ref|ZP_07392983.1| ribonuclease D [Shewanella baltica OS183]
 gi|307305309|ref|ZP_07585057.1| ribonuclease D [Shewanella baltica BA175]
 gi|304350224|gb|EFM14628.1| ribonuclease D [Shewanella baltica OS183]
 gi|306911612|gb|EFN42037.1| ribonuclease D [Shewanella baltica BA175]
          Length = 369

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +       +L ++Q   G     I  +A    +      +L D    K+ H  
Sbjct: 26  LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAQFWALLSDPNIIKLVHSC 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  +DW  
Sbjct: 84  SEDLEVFAHYGKCQPTPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 142

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L++ QL YAA+DV++L+ L  Q   KL   GR
Sbjct: 143 RPLTEAQLSYAANDVLYLYQLYPQLEAKLSVQGR 176


>gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 176

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 6/140 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
            AVD E       +   C++Q+S    D  VD++ + +  ++A  L     D  + K+ H
Sbjct: 29  FAVDLEHHSYRSFKGFTCLMQISTRERDFVVDVLALRSHVRDA--LGKAFADADKLKVMH 86

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L   FG+ V  +F T  A+R+    +   GL   L    GI  +K  Q +DW
Sbjct: 87  GADNDVQWLQKDFGMFVSCLFDTGQAARVLELPSK--GLAYLLHHYCGIKANKRFQLADW 144

Query: 141 SADDLSDEQLQYAASDVVHL 160
               L+ E ++YA  D  HL
Sbjct: 145 RLRPLTKEMVEYARGDTHHL 164


>gi|308232210|ref|ZP_07664029.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu001]
 gi|308371097|ref|ZP_07667091.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu003]
 gi|308374662|ref|ZP_07667838.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu006]
 gi|308375511|ref|ZP_07668042.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu007]
 gi|308378065|ref|ZP_07668659.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu009]
 gi|308379281|ref|ZP_07668932.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu010]
 gi|308380440|ref|ZP_07669197.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu011]
 gi|308214618|gb|EFO74017.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu001]
 gi|308329844|gb|EFP18695.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu003]
 gi|308341104|gb|EFP29955.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu006]
 gi|308346112|gb|EFP34963.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu007]
 gi|308353627|gb|EFP42478.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu009]
 gi|308357474|gb|EFP46325.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu010]
 gi|308361428|gb|EFP50279.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu011]
          Length = 468

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+ ++K  
Sbjct: 139 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 195

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 196 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 241


>gi|167970096|ref|ZP_02552373.1| conserved alanine rich protein [Mycobacterium tuberculosis H37Ra]
 gi|215404645|ref|ZP_03416826.1| hypothetical protein Mtub0_13363 [Mycobacterium tuberculosis
           02_1987]
 gi|215431621|ref|ZP_03429540.1| hypothetical protein MtubE_13303 [Mycobacterium tuberculosis
           EAS054]
 gi|254551737|ref|ZP_05142184.1| hypothetical protein Mtube_14982 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187698|ref|ZP_05765172.1| hypothetical protein MtubCP_16944 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201808|ref|ZP_05769299.1| hypothetical protein MtubT4_17360 [Mycobacterium tuberculosis T46]
 gi|260205991|ref|ZP_05773482.1| hypothetical protein MtubK8_17005 [Mycobacterium tuberculosis K85]
 gi|294994226|ref|ZP_06799917.1| 3'-5' exonuclease [Mycobacterium tuberculosis 210]
 gi|297732285|ref|ZP_06961403.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN R506]
 gi|313659618|ref|ZP_07816498.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN V2475]
          Length = 404

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+ ++K  
Sbjct: 75  EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 131

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 132 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 177


>gi|332708965|ref|ZP_08428935.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya
           majuscula 3L]
 gi|332352154|gb|EGJ31724.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya
           majuscula 3L]
          Length = 890

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 15/114 (13%)

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGV-RVRPVFCT-KIASRLTRT------YTNQHGLK 120
           ++V+   EK+FH   FD   L Y  G  +   V CT +IA +LT          + H LK
Sbjct: 74  IMVNPNIEKVFHNASFD---LRYLGGKEQANNVTCTYQIARKLTNKKLSNPLQVSNHKLK 130

Query: 121 DNLKELLGI-NISKAQQSSDWSADDLSDEQLQYAASDVV---HLHALRLQFTEK 170
               EL    N+   +QSSDW    L+ +QL YA  D V   H+H   L+ ++K
Sbjct: 131 TLALELCNFANVDTEEQSSDWGKRPLTQKQLNYAKMDTVYLAHVHRRLLEISDK 184


>gi|271967979|ref|YP_003342175.1| ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
 gi|270511154|gb|ACZ89432.1| Ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
          Length = 408

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G   R +F T++A RL      + GL   ++ +LG+ + K  
Sbjct: 91  EVVLHAASQDLPCL-AELGFHPRELFDTELAGRLL--GYERVGLGMMVENVLGLKLEKGH 147

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            ++DWS   L ++ L+YAA DV  L  LR    E+L+  G+
Sbjct: 148 SAADWSTRPLPEDWLRYAALDVEVLVELRDVLHEELKTSGK 188


>gi|149919604|ref|ZP_01908083.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
 gi|149819547|gb|EDM78975.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
          Length = 386

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 16/174 (9%)

Query: 16  AARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAPNLVGMLVD 72
           A R  DA  +A+D+E+  +   R+R+C++QL+       +  +A AG    P    +   
Sbjct: 20  AQRMRDAAWVALDSESNSMFAYRERVCLLQLNVAGALFLVDTLALAGDSGEPRAEALAAL 79

Query: 73  EKREK------IFHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKE 125
            +           H G +D+A L   FG+ +  +F T+  AS L  + T    + + + E
Sbjct: 80  AEPLASPSLRLWIHGGEYDVACLKRDFGIALGGLFDTQQAASFLGWSRTGYAAVVEAVCE 139

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
                + KA +  DW    +  + L+YA  DVVHL  +  +      R+G +DL
Sbjct: 140 Q---KLPKAHKQHDWGRRPIDAKALRYALDDVVHLPRVGRELE---ARIGAADL 187


>gi|289570857|ref|ZP_06451084.1| conserved alanine rich protein [Mycobacterium tuberculosis T17]
 gi|289544611|gb|EFD48259.1| conserved alanine rich protein [Mycobacterium tuberculosis T17]
          Length = 443

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+ ++K  
Sbjct: 139 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 195

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 196 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 241


>gi|269468831|gb|EEZ80435.1| ribonuclease D [uncultured SUP05 cluster bacterium]
          Length = 345

 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE   +      LC+VQ++    T D I +      +P L   L  +    I H  
Sbjct: 21  LAIDTEFKRVNTYYPVLCLVQIATKKNT-DCIDVLTLDDLSP-LFDKLYQDDCLWIVHSA 78

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI  L Y      + +F T+IA+ L   Y  Q   +   + L  +++ KA    DW+ 
Sbjct: 79  RQDIEALHYLSKQLPKQLFDTQIAASLV-NYPAQISYQALTESLQNVHLEKAYTRLDWTI 137

Query: 143 DDLSDEQLQYAASDVVHL 160
             L DE ++YA  DV +L
Sbjct: 138 RPLPDEAIEYALDDVRYL 155


>gi|145299067|ref|YP_001141908.1| ribonuclease D [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851839|gb|ABO90160.1| ribonuclease D [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 379

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           KE LG+++ K Q  +DW A  L++ QL+YAA+DV++L  L  +   KL   G+       
Sbjct: 130 KEFLGVDLVKDQARTDWLARPLTERQLEYAAADVLYLMPLYEKVMAKLHESGKFAWFEQE 189

Query: 184 CN 185
           C 
Sbjct: 190 CQ 191


>gi|293608164|ref|ZP_06690467.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828737|gb|EFF87099.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 374

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 72  QQNIFHACGEDIDLIYHYADQEDLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLDI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV++L  L     E+L++ G  +     C+ L
Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMKLAHHIQEQLKQKGLYNYVLEDCSSL 184


>gi|38233981|ref|NP_939748.1| putative ribonuclease [Corynebacterium diphtheriae NCTC 13129]
 gi|38200243|emb|CAE49927.1| Putative ribonuclease [Corynebacterium diphtheriae]
          Length = 407

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 6/167 (3%)

Query: 24  AVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           A+DTE  G     DR  ++Q+   G GTV +I   A ++   +++G +++ +   I H  
Sbjct: 37  AIDTERAGAYRYDDRAYLLQIRREGSGTV-LIDPEANRRLVTSVLGKVINNQ-PWIIHAA 94

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+  L    G     +F T++A RL      +  L   L+E L + + KA  + DWS 
Sbjct: 95  ATDLPCL-SELGFYPSTIFDTELAGRLAGL--PRVNLASMLEERLEVTLKKAHGAEDWSR 151

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
             L    L YAA DV  L  L       L+  G+ +     C  L++
Sbjct: 152 RPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGKLEWHKQECAHLIN 198


>gi|31793853|ref|NP_856346.1| hypothetical protein Mb2700 [Mycobacterium bovis AF2122/97]
 gi|121638556|ref|YP_978780.1| hypothetical protein BCG_2694 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224991048|ref|YP_002645737.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|31619447|emb|CAD94885.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium bovis
           AF2122/97]
 gi|121494204|emb|CAL72682.1| Conserved hypothetical alanine rich protein [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224774163|dbj|BAH26969.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 438

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+ ++K  
Sbjct: 109 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 165

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 166 GAADWSKRPLPSAWLNYAALDVELLIELRAVISRVLAEQGKTDWAA 211


>gi|219558691|ref|ZP_03537767.1| hypothetical protein MtubT1_15842 [Mycobacterium tuberculosis T17]
          Length = 379

 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+ ++K  
Sbjct: 75  EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 131

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 132 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 177


>gi|325122106|gb|ADY81629.1| ribonuclease D, processes tRNA [Acinetobacter calcoaceticus PHEA-2]
          Length = 374

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 72  QQNIFHACGEDIDLIYHYADQEDLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLDI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV++L  L     E+L++ G  +     C+ L
Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMKLAHHIQEQLKQKGLYNYVLEDCSSL 184


>gi|146292862|ref|YP_001183286.1| ribonuclease D [Shewanella putrefaciens CN-32]
 gi|145564552|gb|ABP75487.1| ribonuclease D [Shewanella putrefaciens CN-32]
          Length = 367

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +       +L ++Q   G     I  +A    +      +L +    K+ H  
Sbjct: 24  LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAKFWALLANPNIIKLVHSC 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  +DW  
Sbjct: 82  SEDLEVFAHYGQCQPVPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L++ QL YAA+DV++LH L  Q   KL   GR
Sbjct: 141 RPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGR 174


>gi|120599067|ref|YP_963641.1| ribonuclease D [Shewanella sp. W3-18-1]
 gi|120559160|gb|ABM25087.1| ribonuclease D [Shewanella sp. W3-18-1]
          Length = 367

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +       +L ++Q   G     I  +A    +      +L +    K+ H  
Sbjct: 24  LVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL--PDLAKFWALLANPNIIKLVHSC 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  +DW  
Sbjct: 82  SEDLEVFAHYGQCQPVPLFDSQIAASLCGM-GHGVGYAKLVETCLGEVIDKGESRTDWIR 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L++ QL YAA+DV++LH L  Q   KL   GR
Sbjct: 141 RPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGR 174


>gi|218184595|gb|EEC67022.1| hypothetical protein OsI_33743 [Oryza sativa Indica Group]
          Length = 854

 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D  ++K+ H    DI  L   FG+ V  +F T  ASR+ +   +++ L+  L    G
Sbjct: 281 IFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQM--DRNSLEHLLHHFCG 338

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           +  +K  QS+DW    L DE ++YA  D  +L
Sbjct: 339 VTANKEYQSADWRLRPLPDEMIKYAREDTHYL 370


>gi|198423738|ref|XP_002125788.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 [Ciona
           intestinalis]
          Length = 572

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 3/144 (2%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKRE 76
           +Y   I  D E      +   + ++QL+   G   +IR++  +   P  L  +L D    
Sbjct: 79  QYAKVIGFDCEWTSKSGKPQPVALLQLATVSGVCLLIRLSHYRGPLPVRLQSILSDASYI 138

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ- 135
           K+      D   L + +G+ V      +  +  T+   N  GLK   +  LG+ ++K + 
Sbjct: 139 KVGVGPMEDANKLLHDYGIVVSGCVDLRSLAVRTKETKNSLGLKGLAQSYLGVTMNKQKH 198

Query: 136 -QSSDWSADDLSDEQLQYAASDVV 158
            Q S W A  LS EQ+ YAA+D +
Sbjct: 199 IQCSAWDAPSLSQEQIDYAANDAL 222


>gi|111023812|ref|YP_706784.1| ribonuclease III [Rhodococcus jostii RHA1]
 gi|110823342|gb|ABG98626.1| probable ribonuclease III [Rhodococcus jostii RHA1]
          Length = 429

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTV--DIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +AVD E         R  +VQL   G GTV  D I  AA       ++  L     E I 
Sbjct: 55  LAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAPLAEVINPL-----EWIL 109

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+    +F T++A RL      + GL   ++  LG+ + K   ++D
Sbjct: 110 HSADQDLPGL-AEIGLAPATLFDTELAGRLA--GFERVGLAAIVERTLGLELRKGHGAAD 166

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           WS   L D  L YAA DV  L  LR     +L   G+S+ A 
Sbjct: 167 WSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAA 208


>gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 902

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D  ++K+ H    DI  L   FG+ V  +F T  ASR+ +   +++ L+  L    G
Sbjct: 329 IFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQM--DRNSLEHLLHHFCG 386

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           +  +K  QS+DW    L DE ++YA  D  +L
Sbjct: 387 VTANKEYQSADWRLRPLPDEMIKYAREDTHYL 418


>gi|297571370|ref|YP_003697144.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
 gi|296931717|gb|ADH92525.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
          Length = 398

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 6/170 (3%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
             AVDTE    +   +R  +VQ+      + ++     +    +L  ++ DE    I H 
Sbjct: 39  PFAVDTERAMGIRYSNRAYLVQIKRAGSGIVLLDPIGIEDRLGDLATIMHDEW---ILHA 95

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L    G+    VF T++A  L   Y ++  L+  + E LG  ++K    +DWS
Sbjct: 96  ADQDLPCL-RELGLEPSNVFDTELAG-LILGY-DRVSLQSMIAEELGFVLAKEHSDADWS 152

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           A  L  E   YAA DV  L  LR   T KL+  GR +   S C  +  R 
Sbjct: 153 ARPLGPELRAYAALDVDLLIELRESLTGKLKEAGRYEWFLSECEEVRRRP 202


>gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group]
          Length = 877

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D  ++K+ H    DI  L   FG+ V  +F T  ASR+ +   +++ L+  L    G
Sbjct: 304 IFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQM--DRNSLEHLLHHFCG 361

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           +  +K  QS+DW    L DE ++YA  D  +L
Sbjct: 362 VTANKEYQSADWRLRPLPDEMIKYAREDTHYL 393


>gi|332533384|ref|ZP_08409249.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037093|gb|EGI73550.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
          Length = 304

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L D    K+ H    DI V     G    P+F T+ A +L     N  G    +KEL G
Sbjct: 38  ILKDPSVLKVLHSPSEDIEVFQKYAGFVPSPLFDTQFALQLLGE-GNCMGFALMVKELQG 96

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           I I K++  ++W    L+ +QL YAA+D  +L
Sbjct: 97  IEIDKSESRTNWLQRPLTKKQLDYAAADTFYL 128


>gi|167392672|ref|XP_001740248.1| exosome complex exonuclease RRP6 [Entamoeba dispar SAW760]
 gi|165895708|gb|EDR23337.1| exosome complex exonuclease RRP6, putative [Entamoeba dispar
           SAW760]
          Length = 517

 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 13/150 (8%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDII--RIAAGQKNAPNLVGMLV 71
           +  +V+  AVD E          +C++Q+S    D  +D I  R +    N P       
Sbjct: 202 SLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYIIDTITLRDSITLLNDP-----FT 256

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGIN 130
           +   EK+FH   FD+  L Y FG+ V  V C   + +  R    QH  LK  L++   ++
Sbjct: 257 NPNIEKVFHGCDFDMIWLSYNFGLYV--VNCID-SGQCARALKLQHFSLKYLLQKYCNVD 313

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             K  Q +DW    L+ E ++YA  D  +L
Sbjct: 314 ADKKYQLADWRLRPLTKEMIEYARGDTHYL 343


>gi|256825389|ref|YP_003149349.1| ribonuclease D [Kytococcus sedentarius DSM 20547]
 gi|256688782|gb|ACV06584.1| ribonuclease D [Kytococcus sedentarius DSM 20547]
          Length = 431

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R R +F T++  RL      + GL   ++  L + ++K  
Sbjct: 86  EWVLHAATQDLPCLA-DLGLRPRSLFDTELGGRLV--GLPRVGLAAVVEHYLDLTLAKEH 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L  + L YAA DV  L  +R      L+RLGR + A
Sbjct: 143 SAVDWSTRPLPTDWLVYAALDVEVLVEVRDAMEADLERLGRDEWA 187


>gi|239991576|ref|ZP_04712240.1| putative ribonuclease D [Streptomyces roseosporus NRRL 11379]
          Length = 384

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 14/162 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKI 78
           +AVD E         R  +VQL     G   VD +         P+L G+    +  E I
Sbjct: 22  VAVDAERASGYRYGQRAYLVQLRREGAGSALVDPV-------GCPDLSGLGTALDGTEWI 74

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   + 
Sbjct: 75  LHAATQDLPCL-RDIGMTPTSLFDTELAGRLA--GFPRVGLGAMVENVLGYALEKGHSAV 131

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DWS   L +  L+YAA DV  L  LR    E+L R G+ + A
Sbjct: 132 DWSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGKLEWA 173


>gi|183231928|ref|XP_650756.2| exosome component 10 [Entamoeba histolytica HM-1:IMSS]
 gi|169802269|gb|EAL45368.2| exosome component 10, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 517

 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 13/150 (8%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDII--RIAAGQKNAPNLVGMLV 71
           +  +V+  AVD E          +C++Q+S    D  +D I  R +    N P       
Sbjct: 202 SLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYIIDTITLRDSITLLNDP-----FT 256

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-GLKDNLKELLGIN 130
           +   EK+FH   FD+  L Y FG+ V  V C   + +  R    QH  LK  L++   ++
Sbjct: 257 NPNIEKVFHGCDFDMIWLSYNFGLYV--VNCID-SGQCARALKLQHFSLKYLLQKYCNVD 313

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             K  Q +DW    L+ E ++YA  D  +L
Sbjct: 314 ADKKYQLADWRLRPLTKEMIEYARGDTHYL 343


>gi|297191335|ref|ZP_06908733.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720654|gb|EDY64562.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486]
          Length = 428

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L     V  R +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 115 EWILHAATQDLPCLREIGMVPAR-IFDTELAGRLG--GFPRVGLGAMVESVLGYALEKGH 171

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ D A
Sbjct: 172 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWA 216


>gi|298526151|ref|ZP_07013560.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|298495945|gb|EFI31239.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A]
          Length = 375

 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+ ++K  
Sbjct: 109 EWILHSADQDLPCL-AEVGMRPPALYDTELAGRLA--GFDRVNLAAMVERLLGLGLTKGH 165

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L    L YAA DV  L  LR   +  L   G++D A
Sbjct: 166 GAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWA 210


>gi|242008039|ref|XP_002424820.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212508370|gb|EEB12082.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 843

 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 25/167 (14%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKIFH 80
           ++VD E + L   + +L ++Q+   +G V +  +        A  L  +L  ++  K+ H
Sbjct: 401 VSVDCEGINL-GSKGKLTLIQIGTMNGNVYVFDLVTCSNLFEAGGLARLLTSDQVIKVIH 459

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIAS---RLTRTYTNQHGLKD----NLKELLGI---- 129
             R D + +++ FGV +R VF TK A    ++       H +KD     L E+  +    
Sbjct: 460 DCRNDSSTIYFQFGVILRNVFDTKSAHAVIQMQEMGKPVHKVKDVSLNTLYEIYNLPTNP 519

Query: 130 ------NISKAQQSSDWSADDLSDEQLQYAASDVV----HLHALRLQ 166
                 NI K  Q   W    LS + + YAA+DV+    HL++L L+
Sbjct: 520 MKEYFKNIYKKDQKI-WGRRPLSRDMIVYAAADVLSLVPHLYSLMLK 565


>gi|326513036|dbj|BAK03425.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 490

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%)

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           TR       L    +ELL +++SK  Q SDWS   LS+ Q+QYAASD  +L
Sbjct: 164 TRLPKETKSLASICEELLNVSLSKELQCSDWSCRPLSEGQIQYAASDAYYL 214


>gi|171910647|ref|ZP_02926117.1| ribonuclease D, putative [Verrucomicrobium spinosum DSM 4136]
          Length = 381

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 10/143 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE   L   +++LC++QL+  +G   +I         P L    V +  E  FH  
Sbjct: 42  VYLDTEADSLHHFQEKLCLIQLA-ANGIYALIDPLVLSDLGPLLE---VVDNAEVWFHSA 97

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSDW 140
            +D+ +L  T       +  T++A+RLT  RT+    GL   +++  G+ + K+ Q  DW
Sbjct: 98  DYDLTLLKRTCNWTPTHLKDTQVAARLTGHRTF----GLAALVEQHCGVTLCKSSQKEDW 153

Query: 141 SADDLSDEQLQYAASDVVHLHAL 163
           S   L  +   YA  DV +L  L
Sbjct: 154 SLRPLPAKMQAYAVDDVRYLGRL 176


>gi|114047748|ref|YP_738298.1| ribonuclease D [Shewanella sp. MR-7]
 gi|113889190|gb|ABI43241.1| ribonuclease D [Shewanella sp. MR-7]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%)

Query: 77  KIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISK 133
           K+ H    D+ V F  +G R   P+F ++IA+ L       HGL     ++  LG  I K
Sbjct: 93  KLVHSCSEDLEV-FAHYGQRQPTPLFDSQIAASLCGM---GHGLGYAKLVETCLGEVIDK 148

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLG 175
            +  +DW    L++ QL YAA+DV++L+ L  Q  +KL+   RLG
Sbjct: 149 GESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLG 193


>gi|304312978|ref|YP_003812576.1| Ribonuclease D [gamma proteobacterium HdN1]
 gi|301798711|emb|CBL46944.1| Ribonuclease D [gamma proteobacterium HdN1]
          Length = 377

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 69  MLVDEKREK--IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           ML++E ++   + H    D+ V    +      +  T++A+     +  Q  L++ L   
Sbjct: 70  MLLNENQQPTWVLHSCAEDLEVALNQWDALPNRLVDTQLAAA-HLGHPRQMSLQNLLAVE 128

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           LG+++ K +  SDW    LS  QL YAA DV HL  L  + +  L    R    T  C  
Sbjct: 129 LGVHLPKDETRSDWCKRPLSSAQLSYAAGDVAHLLPLWEKLSHTLHERDRMSWFTEDCAK 188

Query: 187 LMDRA 191
           L+ +A
Sbjct: 189 LIAKA 193


>gi|167533742|ref|XP_001748550.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773069|gb|EDQ86714.1| predicted protein [Monosiga brevicollis MX1]
          Length = 471

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 15/117 (12%)

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------------TNQHGL 119
           ++E I H G+ D+ +L       +  VF T++A  +  T                N  GL
Sbjct: 146 QKEIILHSGQTDLDLLTEVNEAPLERVFDTQLAYLINATLFIRNPQVAANLLGIRNTIGL 205

Query: 120 KDNLKELLG-INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            D +  +   + + K Q  SDW    L+DEQL YA SDV HL  +R +  + L   G
Sbjct: 206 ADLVTHMFPEVKMDKGQALSDWRVRPLNDEQLLYAISDVEHLIEMRHRLQDALSARG 262


>gi|113970513|ref|YP_734306.1| ribonuclease D [Shewanella sp. MR-4]
 gi|113885197|gb|ABI39249.1| ribonuclease D [Shewanella sp. MR-4]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%)

Query: 77  KIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISK 133
           K+ H    D+ V F  +G R   P+F ++IA+ L       HGL     ++  LG  I K
Sbjct: 93  KLVHSCSEDLEV-FAHYGQRQPTPLFDSQIAASLCGM---GHGLGYAKLVETCLGEVIDK 148

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLG 175
            +  +DW    L++ QL YAA+DV++L+ L  Q  +KL+   RLG
Sbjct: 149 GESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLG 193


>gi|291448576|ref|ZP_06587966.1| ribonuclease D [Streptomyces roseosporus NRRL 15998]
 gi|291351523|gb|EFE78427.1| ribonuclease D [Streptomyces roseosporus NRRL 15998]
          Length = 373

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 14/162 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKI 78
           +AVD E         R  +VQL     G   VD +         P+L G+    +  E I
Sbjct: 62  VAVDAERASGYRYGQRAYLVQLRREGAGSALVDPV-------GCPDLSGLGTALDGTEWI 114

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   + 
Sbjct: 115 LHAATQDLPCL-RDIGMTPTSLFDTELAGRLA--GFPRVGLGAMVENVLGYALEKGHSAV 171

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DWS   L +  L+YAA DV  L  LR    E+L R G+ + A
Sbjct: 172 DWSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGKLEWA 213


>gi|242048348|ref|XP_002461920.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor]
 gi|241925297|gb|EER98441.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor]
          Length = 505

 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           +ELL + +SK  Q SDWS   LS+ Q+QYAASD  +L  +   F +K+   G+    T
Sbjct: 192 EELLSVFLSKELQCSDWSCRPLSEGQIQYAASDAYYLLGIFDLFQKKITMEGQCSSTT 249


>gi|117920828|ref|YP_870020.1| ribonuclease D [Shewanella sp. ANA-3]
 gi|117613160|gb|ABK48614.1| ribonuclease D [Shewanella sp. ANA-3]
          Length = 388

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%)

Query: 77  KIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGINISK 133
           K+ H    D+ V F  +G R   P+F ++IA+ L       HGL     ++  LG  I K
Sbjct: 97  KLVHSCSEDLEV-FAHYGQRQPTPLFDSQIAASLCGM---GHGLGYAKLVETCLGEVIDK 152

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLG 175
            +  +DW    L++ QL YAA+DV++L+ L  Q  +KL+   RLG
Sbjct: 153 GESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLG 197


>gi|294650367|ref|ZP_06727734.1| ribonuclease D [Acinetobacter haemolyticus ATCC 19194]
 gi|292823780|gb|EFF82616.1| ribonuclease D [Acinetobacter haemolyticus ATCC 19194]
          Length = 380

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 71/171 (41%), Gaps = 18/171 (10%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPG------DGTV-DIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+DTE + +     +L + Q++        DGTV D+        NA   +     E  +
Sbjct: 25  ALDTEFIKVDTLYPKLGVCQINLDGQVALLDGTVLDLTHFWDKVFNAQQNIFHACSEDID 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I+HY   D   L   F  +V   F   + + L  +Y N       LK  L I I K Q 
Sbjct: 85  LIYHYA--DQKPLHNIFDTQVAMAF---LGNGLQVSYQNA------LKTYLDIEIEKDQT 133

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            SDW A  L+ +Q+ YAA+DV++L  L       LQ  G        C  L
Sbjct: 134 RSDWLARPLTPQQISYAANDVLYLPRLAEALKRDLQSKGIYHYVLEDCQNL 184


>gi|311742288|ref|ZP_07716097.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
 gi|311313916|gb|EFQ83824.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R R +F T+ A RL      + GL   ++  LG +++K  
Sbjct: 102 EWILHAATQDLPCL-AEIGLRPRALFDTEHAGRLLNL--PRVGLATLVEHFLGRSLAKEH 158

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            ++DWS   L +  L YAA DV  L  LR     +L+  G+ + A      L+
Sbjct: 159 SAADWSTRPLPEPWLVYAALDVEVLVELRDLLDAELREAGKREWAAQDFEALL 211


>gi|320007817|gb|ADW02667.1| 3'-5' exonuclease [Streptomyces flavogriseus ATCC 33331]
          Length = 424

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 112 EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLA--GFPRVGLGAIVENVLGYALEKGH 168

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            + DWS   L D  L+YAA DV  L  LR    E+L R G+
Sbjct: 169 SAVDWSTRPLPDPWLRYAALDVELLVDLRNALEEELDRQGK 209


>gi|317152629|ref|YP_004120677.1| 3'-5' exonuclease [Desulfovibrio aespoeensis Aspo-2]
 gi|316942880|gb|ADU61931.1| 3'-5' exonuclease [Desulfovibrio aespoeensis Aspo-2]
          Length = 203

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           HGL++    LLG  ISK+ Q S+W+ + L+ +Q+ YAA+D
Sbjct: 147 HGLRNMAANLLGFRISKSAQCSNWAKEHLTPQQITYAATD 186


>gi|184158040|ref|YP_001846379.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ACICU]
 gi|332874500|ref|ZP_08442403.1| putative ribonuclease D [Acinetobacter baumannii 6014059]
 gi|183209634|gb|ACC57032.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ACICU]
 gi|322508359|gb|ADX03813.1| Ribonuclease D, processes tRNA [Acinetobacter baumannii 1656-2]
 gi|323517981|gb|ADX92362.1| ribonuclease D, processes tRNA [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737344|gb|EGJ68268.1| putative ribonuclease D [Acinetobacter baumannii 6014059]
          Length = 374

 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 72  QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV++L  L     ++L++ G  +     C+ L
Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 184


>gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
 gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
          Length = 512

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 2/138 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVD E       +  +C++Q+S       +  +       P L  +  +    K+ H  
Sbjct: 246 IAVDLENHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGS 305

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+R+ R    + GL   L+   G+   K  Q +DW  
Sbjct: 306 DRDILWLQRDFGIYVCNLFDTGQAARVLRM--ERFGLAFLLQTFCGVTPDKRYQLADWRL 363

Query: 143 DDLSDEQLQYAASDVVHL 160
             LS E L+YA  D  +L
Sbjct: 364 RPLSAEMLKYAREDTHYL 381


>gi|239501841|ref|ZP_04661151.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AB900]
 gi|332851689|ref|ZP_08433614.1| putative ribonuclease D [Acinetobacter baumannii 6013150]
 gi|332865936|ref|ZP_08436716.1| putative ribonuclease D [Acinetobacter baumannii 6013113]
 gi|332729696|gb|EGJ61031.1| putative ribonuclease D [Acinetobacter baumannii 6013150]
 gi|332734986|gb|EGJ66072.1| putative ribonuclease D [Acinetobacter baumannii 6013113]
          Length = 374

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 72  QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV++L  L     ++L++ G  +     C+ L
Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 184


>gi|262370490|ref|ZP_06063816.1| ribonuclease D [Acinetobacter johnsonii SH046]
 gi|262314832|gb|EEY95873.1| ribonuclease D [Acinetobacter johnsonii SH046]
          Length = 380

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLK----DNLKELLGI 129
           ++ +FH    DI +++ Y     +  VF T++           HGL+    + LK++L +
Sbjct: 72  QQNVFHACSEDIDLIYHYAQHKTLNNVFDTQVGMSFLG-----HGLQVSYQNALKQMLDV 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K +  S+W A  LS  QL YAA+DV++L  L  +  ++L        A   C  L
Sbjct: 127 DIDKGETRSNWLARPLSPAQLSYAANDVLYLMNLSEKVKQELDSKSLLHFALEDCQHL 184


>gi|256822615|ref|YP_003146578.1| ribonuclease D [Kangiella koreensis DSM 16069]
 gi|256796154|gb|ACV26810.1| ribonuclease D [Kangiella koreensis DSM 16069]
          Length = 384

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTE         RL ++Q+  G     I  +A    +A  L  +       K  H  
Sbjct: 37  LAVDTEFDRTNTYFHRLALIQIYDGKEIYLIDPLAFDDLSA--LTELFASTSVVKALHSC 94

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+  L++ +G     VF T+IA+ L     +  G  + ++  L + + K    +DW  
Sbjct: 95  SEDLEALYHQYGFEFNQVFDTQIAASLDGIGLSV-GYGNIVEHFLSVVLDKEHTKTDWLQ 153

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             LS EQ  YAA DV +L  +  +  + L   G
Sbjct: 154 RPLSQEQRVYAAQDVQYLMPVYYRLRDSLLEKG 186


>gi|260555081|ref|ZP_05827302.1| ribonuclease D [Acinetobacter baumannii ATCC 19606]
 gi|260411623|gb|EEX04920.1| ribonuclease D [Acinetobacter baumannii ATCC 19606]
          Length = 246

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 72  QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV++L  L     ++L++ G  +     C+ L
Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 184


>gi|169796039|ref|YP_001713832.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AYE]
 gi|213157227|ref|YP_002319272.1| ribonuclease D [Acinetobacter baumannii AB0057]
 gi|215483497|ref|YP_002325714.1| Ribonuclease D(RNase D) [Acinetobacter baumannii AB307-0294]
 gi|301345593|ref|ZP_07226334.1| ribonuclease D [Acinetobacter baumannii AB056]
 gi|301510304|ref|ZP_07235541.1| ribonuclease D [Acinetobacter baumannii AB058]
 gi|301597268|ref|ZP_07242276.1| ribonuclease D [Acinetobacter baumannii AB059]
 gi|169148966|emb|CAM86843.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AYE]
 gi|213056387|gb|ACJ41289.1| ribonuclease D [Acinetobacter baumannii AB0057]
 gi|213988267|gb|ACJ58566.1| Ribonuclease D(RNase D) [Acinetobacter baumannii AB307-0294]
          Length = 374

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 72  QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV++L  L     ++L++ G  +     C+ L
Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 184


>gi|50954730|ref|YP_062018.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951212|gb|AAT88913.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 398

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+    +F T++A+RL      + GL   ++ELLGI+++K  
Sbjct: 77  EWVLHAATQDLTCL-REVGLDPVTIFDTELAARLL--GMPRVGLGTVVEELLGIHLTKEH 133

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALR 164
            ++DWS   L    L+YAA DV  L  LR
Sbjct: 134 SAADWSTRPLPGPWLEYAALDVELLPDLR 162


>gi|193077320|gb|ABO12113.2| ribonuclease D [Acinetobacter baumannii ATCC 17978]
          Length = 374

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 72  QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV++L  L     ++L++ G  +     C+ L
Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 184


>gi|293334443|ref|NP_001170525.1| hypothetical protein LOC100384536 [Zea mays]
 gi|238005848|gb|ACR33959.1| unknown [Zea mays]
          Length = 666

 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 16/180 (8%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAA 58
            T ++ H+G        + V   AVD E       +   C++Q+S    D  VD +++  
Sbjct: 151 FTLVQDHKGLTELAKKLKSVTEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRI 210

Query: 59  GQKNAPNLVGMLVDEK-----REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                   +G+ + E      + K+ H    DI  L   F + V  +F T  ASR+ +  
Sbjct: 211 -------YIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQME 263

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            N   L+  L    G+   K  Q++DW +  L DE ++YA  D  +L  +     ++LQR
Sbjct: 264 RN--SLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQR 321


>gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 524

 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 10/143 (6%)

Query: 40  CIVQLS--PGDGTVDII--RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95
           C++Q+S    D  +D +  RI  G      L  +  D  + K+ H    DI  L   F V
Sbjct: 4   CLMQISTRSEDFIIDTLKLRIYIGSY----LKEIFKDPTKRKVMHGADRDIMWLQRDFRV 59

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155
            V  +F T  ASR+ +   N   L+  L    G+  +K  Q++DW +  LSDE ++YA  
Sbjct: 60  YVCNLFDTGQASRVLQMERNS--LEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYARE 117

Query: 156 DVVHLHALRLQFTEKLQRLGRSD 178
           D  +L  +      +LQR   S+
Sbjct: 118 DTHYLLYIYDLMRLRLQRESTSE 140


>gi|119717898|ref|YP_924863.1| 3'-5' exonuclease [Nocardioides sp. JS614]
 gi|119538559|gb|ABL83176.1| 3'-5' exonuclease [Nocardioides sp. JS614]
          Length = 442

 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 3/108 (2%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           E  E I H    D+  L    G+    +F T++A RL      + GL   ++ LLG  ++
Sbjct: 113 EGTEWILHAATQDLPCL-AEVGLLPSRLFDTELAGRLL--GYPRVGLATLVETLLGSRLA 169

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           K   + DWS   L +  L+YAA DV  L  LR    ++L+  G+++ A
Sbjct: 170 KEHSAVDWSTRPLPEPWLEYAALDVEVLAELRDLLADELETAGKAEWA 217


>gi|282866537|ref|ZP_06275580.1| 3'-5' exonuclease [Streptomyces sp. ACTE]
 gi|282558584|gb|EFB64143.1| 3'-5' exonuclease [Streptomyces sp. ACTE]
          Length = 384

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      + GL   ++ LLG  + K  
Sbjct: 72  EWILHAATQDLPCL-RDIGMVPTSLFDTELAGRLA--GFPRVGLGAIVENLLGYALEKGH 128

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L D  L+YAA DV  L  LR     +L+R G+ + A
Sbjct: 129 SAVDWSTRPLPDPWLRYAALDVELLVDLRDALEAELERQGKLEWA 173


>gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea sp. MED297]
 gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297]
          Length = 380

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 9/165 (5%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLV 71
           E AA  V  IA+DTE +        L ++Q+   D    +D ++I      AP LV +L 
Sbjct: 20  EWAAASV--IALDTEFVRTDSFYAHLGLIQVGIEDQVWLIDPLQI---NDWAP-LVRVLS 73

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D    K+ H    D  VL +  GV ++ VF T+IA+     +  Q      ++ +  + +
Sbjct: 74  DPAIVKVLHALSEDAEVLAHHLGVELQNVFDTQIAAGFL-GHPVQMSYARLVEAICDVEL 132

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            K    SDW    L+DEQ  YAA+DV+ L+ +      +L+   R
Sbjct: 133 PKEATRSDWLQRPLADEQCFYAAADVLWLYRVYQHCAAQLKEQNR 177


>gi|126641731|ref|YP_001084715.1| ribonuclease D [Acinetobacter baumannii ATCC 17978]
          Length = 318

 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 16  QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 70

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV++L  L     ++L++ G  +     C+ L
Sbjct: 71  DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSL 128


>gi|289641274|ref|ZP_06473440.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
 gi|289508872|gb|EFD29805.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
          Length = 474

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   +F T++A RL      + GL   ++++LG  + K  
Sbjct: 107 EWVLHAANQDLPCL-AEVGLRPSRLFDTELAGRLL--GYERVGLGIMVEKVLGFTLEKGH 163

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            ++DWS   L +  L+YAA DV  L  LR     +L+  G+
Sbjct: 164 SAADWSTRPLPEPWLRYAALDVELLVELRDALETELETQGK 204


>gi|291299881|ref|YP_003511159.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728]
 gi|290569101|gb|ADD42066.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           +AVD E       + R  ++QL   G GT  +     G ++   L   L D   E I H 
Sbjct: 47  VAVDAERASGFRYQPRAYLIQLRRAGAGTALVD--PTGFEDLRELNAALADT--EWILHA 102

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L    G+R   +F T++A+RL      + GL   +++LLG  + K   ++DWS
Sbjct: 103 ASQDLPCLAGE-GMRPPRLFDTELAARLC--GFERVGLAALVEKLLGFTLEKHHSAADWS 159

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
              L  + L YAA DV  L  LR     +L+  G+ D A
Sbjct: 160 TRPLPADWLTYAALDVELLVELRDILDAELRLQGKRDWA 198


>gi|167855622|ref|ZP_02478381.1| ribonuclease D [Haemophilus parasuis 29755]
 gi|167853249|gb|EDS24504.1| ribonuclease D [Haemophilus parasuis 29755]
          Length = 388

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            IA+DTE +       +L ++QL  G     +D + I     +      +L +E   K+ 
Sbjct: 41  VIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLSIT----DFSPFTALLTNENVLKVL 96

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINISKAQ 135
           H    D+ V  + F    +P+  T++ +          G+     +L    L + + K  
Sbjct: 97  HACSEDLEVFQHYFKQLPQPMLDTQVMAGFVGI-----GISIGFAKLALHYLEVELDKGA 151

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR-LGRSDLATSCCNFLMDR 190
             +DW +  LS+ QLQYA +DV +L  +  +  E L + L ++ +   C   L  R
Sbjct: 152 SRTDWLSRPLSEIQLQYACADVWYLLPIYHKLAEDLAKTLWQTAVVEECATLLAKR 207


>gi|297156498|gb|ADI06210.1| ribonuclease D [Streptomyces bingchenggensis BCW-1]
          Length = 424

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 71/162 (43%), Gaps = 14/162 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78
           +AVD E         R  +VQL   G GT  I  +       P+L G+   + D   E +
Sbjct: 62  VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV-----GCPDLSGLGDAIADA--EWV 114

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   + 
Sbjct: 115 LHAATQDLPCL-RDIGMLPGRLFDTELAGRLA--GFARVGLGAMVENILGYALEKGHSAV 171

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DWS   L D  L YAA DV  L  LR    E+L R G+ + A
Sbjct: 172 DWSTRPLPDPWLHYAALDVELLVDLRDALEEELTRQGKLNWA 213


>gi|134098409|ref|YP_001104070.1| putative ribonuclease D (partial match) [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003374|ref|ZP_06561347.1| ribonuclease D [Saccharopolyspora erythraea NRRL 2338]
 gi|133911032|emb|CAM01145.1| putative ribonuclease D (partial match) [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 419

 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 7/152 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           +AVDTE         R  +VQL   G GTV +  IA      P L   L D   E + H 
Sbjct: 52  VAVDTERASGYRYSQRAYLVQLRREGAGTVLVDPIALAGSLEP-LATALDDT--EWVLHA 108

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L     +R   +F T++A RL     ++  L   ++ +LG  + K   ++DWS
Sbjct: 109 ASQDLPCL-AELDLRPARLFDTELAGRLA--GFDRVSLGALVERMLGYRLEKGHSAADWS 165

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              L  + L YAA DV  L ALR     +L+R
Sbjct: 166 RRPLPADWLAYAALDVELLVALREAMHAELER 197


>gi|329940178|ref|ZP_08289460.1| ribonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301004|gb|EGG44900.1| ribonuclease [Streptomyces griseoaurantiacus M045]
          Length = 428

 Score = 44.3 bits (103), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 116 EWVLHAATQDLPCL-REIGMRPTRLFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGH 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A
Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 217


>gi|302337887|ref|YP_003803093.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293]
 gi|301635072|gb|ADK80499.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293]
          Length = 284

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 32/177 (18%)

Query: 17  ARYVDAIAVDTE-TLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGM-LVD 72
           AR V  IAVD E    L    + LC+VQ+  G+    VD           P +V + LV 
Sbjct: 23  ARGVREIAVDIEGEFNLHRYGEHLCLVQVWDGEVLAIVD-----------PLVVDLALVR 71

Query: 73  EKREKIFHYGRF---------DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           E    IF  G F         D  +L+  +G+    V C  + + +   +  + GL   L
Sbjct: 72  E----IFESGSFRKIVYDCSSDRTLLYRRYGIHFNEV-CDLMPAVVLLDFQKK-GLASVL 125

Query: 124 KELLGI--NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             +L I     K  Q  DW +  +  + L+YAA+DV+HL  L+ +  ++L+  G SD
Sbjct: 126 SSVLHIEEKPKKKFQQYDWMSRPIDADALEYAAADVLHLFTLKEELFKRLEEEGLSD 182


>gi|296394326|ref|YP_003659210.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985]
 gi|296181473|gb|ADG98379.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985]
          Length = 470

 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   +F T++  R+      + GL   ++ LLG+ ++K  
Sbjct: 115 EWVLHAADQDLPCL-AELGLRPAKLFDTELGGRIA--GFERVGLAALVEALLGVGLAKGH 171

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L  E L YAA DV  L  +R      L   G++  A
Sbjct: 172 GAADWSQRPLPPEWLNYAALDVELLIPMREALLAVLAEQGKTQWA 216


>gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S]
 gi|311888800|emb|CBH48112.1| putative RNase D [Rhodococcus equi 103S]
          Length = 445

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+    +F T++A RL      + GL   ++  LG+ + K  
Sbjct: 127 EWVLHSADQDLPCL-AELGLEPAALFDTELAGRLA--GFERVGLAAIVERTLGLELRKGH 183

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L D  L YAA DV  L  LR     +L   G+++ A
Sbjct: 184 GAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGKTEWA 228


>gi|260554178|ref|ZP_05826436.1| ribonuclease D(RNase D) [Acinetobacter sp. RUH2624]
 gi|260404684|gb|EEW98196.1| ribonuclease D(RNase D) [Acinetobacter sp. RUH2624]
          Length = 374

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 72  QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV++L  L     ++L++ G  +     C  L
Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYECVLEDCRSL 184


>gi|118379200|ref|XP_001022767.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89304534|gb|EAS02522.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 722

 Score = 43.9 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 24/168 (14%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + +DTE          LC++Q+S    D  +D++ I + Q     L  + + +   KIF+
Sbjct: 47  LGIDTEQSFAKTYEGFLCLIQISTDQNDYLIDVLGINSKQGINECLSKVFLCKDIIKIFY 106

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRT-----------YTNQHGLKDNLKELLG 128
            G+ DI  L   F + V   F  K  AS L ++           Y N    K   KEL  
Sbjct: 107 AGQQDILWLKRDFDLSVVNYFDVKECASFLKKSDDNSLIQLIDRYCNYKLDKQKKKEL-- 164

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ-FTEKLQRLG 175
                  Q S+WS   LS EQL YAA D  +L  +R +   E +Q +G
Sbjct: 165 -------QVSEWSNRPLSKEQLDYAALDSHYLIKIRYELLCETIQSVG 205


>gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 704

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 99  PVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           P+F T IA+++      + G K    ++  LG+ + K  Q+SDWS+  LS EQL YAA D
Sbjct: 195 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHLSQEQLLYAARD 254

Query: 157 VV 158
             
Sbjct: 255 AA 256


>gi|282899917|ref|ZP_06307878.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195187|gb|EFA70123.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 317

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 9/131 (6%)

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--CTKIASRLTRTYTNQHGLKDNLKEL 126
           ++VD + +K+FH   FD+  L       V   F    KI  R+ +T TN   LK    EL
Sbjct: 75  IMVDVQIQKVFHNADFDLKYLGKNSAKNVTCTFKVAKKIGHRILQT-TNL-KLKTLAVEL 132

Query: 127 LGI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
               ++ K   +SDW    L ++QL+YAA D V+L A+      +L  L   D  +S  N
Sbjct: 133 CHFSDVDKEGGASDWGKRPLCEKQLKYAAMDTVYLAAVH----RRLMELSDPDAVSSIFN 188

Query: 186 FLMDRAELDLL 196
              D    ++L
Sbjct: 189 NNFDNTTPNIL 199


>gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 704

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 99  PVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           P+F T IA+++      + G K    ++  LG+ + K  Q+SDWS+  LS EQL YAA D
Sbjct: 195 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHLSQEQLLYAARD 254

Query: 157 VV 158
             
Sbjct: 255 AA 256


>gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus equi ATCC 33707]
 gi|325556528|gb|EGD26194.1| ribonuclease III [Rhodococcus equi ATCC 33707]
          Length = 413

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+    +F T++A RL      + GL   ++  LG+ + K  
Sbjct: 95  EWVLHSADQDLPCL-AELGLEPAALFDTELAGRLA--GFERVGLAAIVERTLGLELRKGH 151

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L D  L YAA DV  L  LR     +L   G+++ A
Sbjct: 152 GAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGKTEWA 196


>gi|72162300|ref|YP_289957.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX]
 gi|71916032|gb|AAZ55934.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX]
          Length = 420

 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L     +R R +F T++A RL      + GL   ++ +LG+ ++K  
Sbjct: 107 EMVLHAAHQDLPCLTEVH-LRPRRLFDTELAGRLL--GYQRVGLGAMVERVLGVRLAKEH 163

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L ++ L+YAA DV  L  LR     +L   G+ + A
Sbjct: 164 AAVDWSTRPLPEDWLRYAALDVEVLIELRDALEAELAETGKLEWA 208


>gi|309801464|ref|ZP_07695591.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
 gi|308221979|gb|EFO78264.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
          Length = 430

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G+    +F T+IA+RL   +  + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 106 FADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             YAA DV  L  L  +   +L+R G+ D A     + +
Sbjct: 164 RNYAALDVELLIELEQRMRTELKRQGKRDWAEEEFTYAL 202


>gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 704

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 99  PVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           P+F T IA+++      + G K    ++  LG+ + K  Q+SDWS+  LS EQL YAA D
Sbjct: 195 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHLSQEQLLYAARD 254

Query: 157 VV 158
             
Sbjct: 255 AA 256


>gi|306822549|ref|ZP_07455927.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
 gi|304554094|gb|EFM42003.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
          Length = 433

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G+    +F T+IA+RL   +  + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 109 FADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 166

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             YAA DV  L  L  +   +L+R G+ D A     + +
Sbjct: 167 RNYAALDVELLIELEQRMRTELKRQGKRDWAEEEFTYAL 205


>gi|305680942|ref|ZP_07403749.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
 gi|305659147|gb|EFM48647.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
          Length = 408

 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 15/170 (8%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
           AVDTE +      +R+C++Q+        +I + +  +   + +G ++ +    + H   
Sbjct: 40  AVDTERVSGFRYHNRVCLLQIRRAGAGTMLIDVESDPQATTDFMGRVLTDT-GWVVHAAT 98

Query: 84  FDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            D+    Y   +R+RP  +F T++A R    +  +  L   ++  LG+ + K     DWS
Sbjct: 99  SDLP---YLEQLRLRPAQLFDTELAGRFLGFH--RVNLAAMVEHYLGVRLRKNHGGEDWS 153

Query: 142 ADDLSDEQLQYAASDVVHL----HALRLQFTEKLQRLGRSDLATSCCNFL 187
              +  E L YAA DV +L     A+R + T   Q+  + +     C++L
Sbjct: 154 RRPIPSEWLDYAALDVEYLLPLADAMRSELT---QQSPKDEWVAEECDYL 200


>gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia]
          Length = 733

 Score = 43.9 bits (102), Expect = 0.014,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 9/158 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLV-DEKREKIF 79
           I VD E    +    ++ IVQ+   +    +D+I I    +   N+   +  D+K  K+F
Sbjct: 60  IGVDIEHTNDIGFDGQISIVQIKDDEDVYIIDVIEIGVDNQKLINVFKQIFEDDKIIKVF 119

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA----Q 135
           + G  D+  L   F + ++  F  K  +   +   ++  L    K+     +SK+     
Sbjct: 120 YAGSTDVLWLKRDFQITIQNFFDIKEVADECKL--SKISLIFLWKQYCDHQVSKSYKTNM 177

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           Q+SDW+   L+ EQL YAA D  +L  LR    E+L +
Sbjct: 178 QTSDWAERPLTQEQLIYAAYDCYYLPYLRYVLLEELSK 215


>gi|315080608|gb|EFT52584.1| 3'-5' exonuclease [Propionibacterium acnes HL078PA1]
          Length = 412

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 15/164 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76
           IA+DTE         R C++QL   G GT  VD + +  A G K  A  L G       +
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I H    D+  L    G+R   +F T++ASRL      +  L   ++   G+ + K   
Sbjct: 92  WILHAATQDMPCLAMD-GLRPDDLFDTELASRLLNL--PRVSLGPMVERYCGVTLLKEHS 148

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192


>gi|300784546|ref|YP_003764837.1| ribonuclease D [Amycolatopsis mediterranei U32]
 gi|299794060|gb|ADJ44435.1| ribonuclease D [Amycolatopsis mediterranei U32]
          Length = 407

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 11/169 (6%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAP--NLVGMLVDEKREKI 78
           A+AVDTE         +  +VQL   G GTV I  IA   + AP   ++  L     E +
Sbjct: 42  AVAVDTERASGYRYFPKAYLVQLRREGAGTVLIDPIALDGELAPLREVLNSL-----EWV 96

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L    G+    +F T++A RL      +  L   ++ LLG  + K   ++
Sbjct: 97  LHAASQDLPCL-AELGLHPAALFDTELAGRLA--GYERVALGTLVELLLGYTLEKGHSAA 153

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           DWS   L  + L YAA DV  L  LR +   +L   G+ + A     F+
Sbjct: 154 DWSKRPLPVDWLNYAALDVELLIQLREKLEAELGAQGKLEWARQEFEFV 202


>gi|51246649|ref|YP_066533.1| ribonuclease D [Desulfotalea psychrophila LSv54]
 gi|50877686|emb|CAG37526.1| related to ribonuclease D [Desulfotalea psychrophila LSv54]
          Length = 374

 Score = 43.9 bits (102), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDG---TVDIIRIAAGQKNAPNLVGMLVDE 73
           A  +DA+ +DTE +       +L ++Q++  D     +D + I    K+   L  +L D 
Sbjct: 20  ALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEECYAIDPLSI----KDLSPLGELLADR 75

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              KI H    D+ ++    G   + +F T++A+    + +    L   + E L   + K
Sbjct: 76  NTIKILHDAPQDLIIMSQATGATPQNIFDTRLAAGFAGSIST-ISLLQLVSEQLETELDK 134

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           ++  ++W    L+++QL Y+ +DV +L A R+    K+
Sbjct: 135 SETRTNWLKRPLTEKQLSYSLNDVRYLRATRVILLSKI 172


>gi|255637101|gb|ACU18882.1| unknown [Glycine max]
          Length = 278

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 18/166 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R+  LC++QL+  D    +  I  G++        L      K+ H  
Sbjct: 61  IGFDCEGVDLC-RKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDC 119

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128
           + D   L++ FG+++  V  T+IA  L      +  L+D+    +G              
Sbjct: 120 KRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGKSYDE 179

Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              + +   Q    W    LS++ ++ AA DV  L  +  Q  EKL
Sbjct: 180 KEEVRVLLRQDPKFWRHRPLSEQMVRAAADDVRFLLYIYHQMMEKL 225


>gi|224003495|ref|XP_002291419.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973195|gb|EED91526.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 181

 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 10/159 (6%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKN 62
           R+++G+   E     +  IA+D E          +C++QLS     G   +I   + +  
Sbjct: 18  RINDGEQSGE-----IREIALDLEAHSHRTFAGFVCLIQLSIHISSGYDFLIDALSLRHV 72

Query: 63  APNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            P  +G +L +    K+ H    DI  L   FG  V  +F T  ASR  +  +   GL  
Sbjct: 73  IPTCLGPILANPNILKVMHGADSDIPWLQRDFGCYVVNLFDTGRASRALKFQSA--GLAF 130

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            L++  G++  KA Q SDW    L D+   YA +D  +L
Sbjct: 131 LLRKYAGLDPDKAHQLSDWRRRPLPDDMRTYAVADTRYL 169


>gi|119505873|ref|ZP_01627938.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
 gi|119458301|gb|EAW39411.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
          Length = 380

 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           KI H    D+ V     GV  RP+  T K A+ L   +   +  +D + +LL I+++K +
Sbjct: 83  KILHSASEDLEVFERWLGVLPRPMIDTQKAAAMLGLGFGLSY--RDLVHDLLSIDVAKDE 140

Query: 136 QSSDWSADDLSDEQLQYAASDVVHL 160
             SDW    L+D Q  YA  DV  L
Sbjct: 141 TQSDWLVRPLTDAQCHYAMQDVTFL 165


>gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
 gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           E  E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + 
Sbjct: 101 EGTEWILHAATQDLPCL-SDLGLHPAALFDTELAGRLL--GYPRVGLGTLVETVLGFTML 157

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           K   ++DWS   L D  L+YAA DV  L  LR     +L   G+   A    ++L
Sbjct: 158 KEHSAADWSTRPLPDAWLEYAALDVEVLVELREALAAELVAQGKDAWARQEFDWL 212


>gi|89274974|gb|ABD65937.1| ribonuclease D [Streptomyces fungicidicus]
          Length = 430

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L     V  R +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 116 EWVLHAATQDLPCLREIGMVPSR-LFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGH 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ D A
Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWA 217


>gi|302557678|ref|ZP_07310020.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
 gi|302475296|gb|EFL38389.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
          Length = 430

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L     V  R +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 116 EWVLHAATQDLPCLREIGMVPSR-LFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGH 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ D A
Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWA 217


>gi|326561643|gb|EGE11980.1| ribonuclease D [Moraxella catarrhalis 103P14B1]
 gi|326562606|gb|EGE12917.1| ribonuclease D [Moraxella catarrhalis 46P47B1]
 gi|326571165|gb|EGE21189.1| ribonuclease D [Moraxella catarrhalis BC7]
 gi|326573455|gb|EGE23423.1| ribonuclease D [Moraxella catarrhalis 101P30B1]
 gi|326577111|gb|EGE27005.1| ribonuclease D [Moraxella catarrhalis O35E]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G    L E+LGI I K +  S+W A  LS EQ  YAA+DV +L         KL  + 
Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLL--------KLYEVV 185

Query: 176 RSDLA 180
           R++LA
Sbjct: 186 RTELA 190


>gi|326560439|gb|EGE10821.1| ribonuclease D [Moraxella catarrhalis 7169]
 gi|326565826|gb|EGE15988.1| ribonuclease D [Moraxella catarrhalis BC1]
 gi|326570481|gb|EGE20521.1| ribonuclease D [Moraxella catarrhalis BC8]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G    L E+LGI I K +  S+W A  LS EQ  YAA+DV +L         KL  + 
Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLL--------KLYEVV 185

Query: 176 RSDLA 180
           R++LA
Sbjct: 186 RTELA 190


>gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 515

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           D+  +C  R    IAVD E       +  +C++Q+S       +  +A      P+L  +
Sbjct: 233 DMAMKC--RLAGEIAVDLENHNYRSFQGFVCLMQVSTRSEDFIVDALALRSHMGPSLKDL 290

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLG 128
             D   +K+ H    DI  L   FG+ V  +F T + A+R+ +      GL   ++  L 
Sbjct: 291 FADANVKKVMHGADRDIEWLQRDFGIYVCNMFDTGQQAARVLQ--LEGFGLAFLMQRFLK 348

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDV 157
           IN  K  Q +DW    L  E ++YA  D 
Sbjct: 349 INPDKRYQLADWRIRPLPAEMIKYAREDT 377


>gi|296113063|ref|YP_003627001.1| ribonuclease D [Moraxella catarrhalis RH4]
 gi|295920757|gb|ADG61108.1| ribonuclease D [Moraxella catarrhalis RH4]
 gi|326563584|gb|EGE13838.1| ribonuclease D [Moraxella catarrhalis 12P80B1]
          Length = 407

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G    L E+LGI I K +  S+W A  LS EQ  YAA+DV +L         KL  + 
Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLL--------KLYEVV 185

Query: 176 RSDLA 180
           R++LA
Sbjct: 186 RTELA 190


>gi|256784454|ref|ZP_05522885.1| ribonuclease [Streptomyces lividans TK24]
          Length = 384

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 14/162 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78
           +AVD E         R  +VQL   G G+  I  +A      P+L G+   + D   E +
Sbjct: 22  VAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC-----PDLSGLGAAIADA--EWV 74

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L     V  R +F T++A RL      + GL   ++ +LG  + K   + 
Sbjct: 75  LHAATQDLPCLREIGMVPTR-IFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGHSAV 131

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DWS   L +  L+YAA DV  L  LR    ++L R G+ + A
Sbjct: 132 DWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 173


>gi|325120662|emb|CBZ56217.1| putative 3'-5' exonuclease domain-containing protein [Neospora
           caninum Liverpool]
          Length = 480

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 40/94 (42%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P LV +LV    +K       ++  L   FGV  +   C   A+      TN   L+   
Sbjct: 28  PGLVSLLVRPDVQKATQGATGEVEALQREFGVAAKNFLCLHAAAIALGCATNSRSLQALC 87

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
              L   + K+ Q S WS D LS EQ  YAA+D 
Sbjct: 88  GVFLRSYLDKSLQLSTWSRDALSPEQCMYAATDA 121


>gi|21224360|ref|NP_630139.1| ribonuclease [Streptomyces coelicolor A3(2)]
 gi|3169042|emb|CAA19240.1| putative ribonuclease [Streptomyces coelicolor A3(2)]
          Length = 394

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 14/162 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78
           +AVD E         R  +VQL   G G+  I  +A      P+L G+   + D   E +
Sbjct: 32  VAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC-----PDLSGLGAAIADA--EWV 84

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L     V  R +F T++A RL      + GL   ++ +LG  + K   + 
Sbjct: 85  LHAATQDLPCLREIGMVPTR-IFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGHSAV 141

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DWS   L +  L+YAA DV  L  LR    ++L R G+ + A
Sbjct: 142 DWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 183


>gi|302674116|ref|XP_003026743.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8]
 gi|300100427|gb|EFI91840.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8]
          Length = 297

 Score = 43.5 bits (101), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PN++ + V+ K + I     F + V     G  +  ++ +   S      T    L D  
Sbjct: 117 PNIIKVGVELKGDSILLLRHFAVPV---HNGWEISQLWKSMHPSIEVAPLTTHISLDDMA 173

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           + +LG+ + K QQ+SDWSA  LS EQ++Y+  D
Sbjct: 174 RIVLGVKVDKLQQTSDWSAPALSVEQIEYSYLD 206


>gi|171742685|ref|ZP_02918492.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC
           27678]
 gi|283456244|ref|YP_003360808.1| ribonuclease D [Bifidobacterium dentium Bd1]
 gi|171278299|gb|EDT45960.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC
           27678]
 gi|283102878|gb|ADB09984.1| Ribonuclease D [Bifidobacterium dentium Bd1]
          Length = 433

 Score = 43.5 bits (101), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G+    +F T+IA+RL   +  + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 109 FADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 166

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             YAA DV  L  L  +   +L+R G+ D A
Sbjct: 167 RNYAALDVELLIELEQRMRTELKRQGKRDWA 197


>gi|88857337|ref|ZP_01131980.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           tunicata D2]
 gi|88820534|gb|EAR30346.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           tunicata D2]
          Length = 375

 Score = 43.5 bits (101), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 2/114 (1%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V F   G    P+F T+ A  L     N  G    ++  LG+ I K++ 
Sbjct: 77  KVLHSPSEDVEV-FLKHGCIPSPIFDTQFALSLLGG-ANCLGFAIMVERFLGLTIDKSES 134

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            ++W    LS  QL+YAA DV +L     +   +++ LG  ++     + L+ +
Sbjct: 135 RTNWLQRPLSASQLEYAAGDVFYLLPCFEKIRAEIEALGFMNIVIGEGDLLVTK 188


>gi|326575647|gb|EGE25570.1| ribonuclease D [Moraxella catarrhalis CO72]
          Length = 407

 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G    L E+LGI I K +  S+W A  LS EQ  YAA+DV +L         KL  + 
Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLL--------KLYEVV 185

Query: 176 RSDLA 180
           R++LA
Sbjct: 186 RTELA 190


>gi|227495500|ref|ZP_03925816.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
 gi|226831047|gb|EEH63430.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
          Length = 402

 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    DIA L    G+ +  +F T +A+RL      + GL    +++LG+ + K  QS
Sbjct: 92  ILHDADQDIASLRMC-GLEIPELFDTMLAARLLGF--QRFGLAAVCEQILGVTLDKNHQS 148

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA--ELDL 195
            DWS   L    L+YAA DV  L  L  + +  L +  R + A    + ++ R   + D 
Sbjct: 149 DDWSTRPLPRPWLRYAALDVELLTDLYEKMSHSLFKANRWEWAQQEFHNILTRPTKKPDS 208

Query: 196 LGWENV 201
             W N+
Sbjct: 209 EPWRNL 214


>gi|169633537|ref|YP_001707273.1| ribonuclease D, processes tRNA [Acinetobacter baumannii SDF]
 gi|169152329|emb|CAP01251.1| ribonuclease D, processes tRNA [Acinetobacter baumannii]
          Length = 374

 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 10/118 (8%)

Query: 75  REKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN----LKELLGI 129
           ++ IFH    DI +++ Y     +  VF T++           HGL+ +    LK  L I
Sbjct: 72  QQNIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFLG-----HGLQVSYQGALKLCLEI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +I K Q  SDW A  LS +QL YAA+DV+ L  L     ++L++ G  +     C+ L
Sbjct: 127 DIEKDQTRSDWLARPLSPQQLCYAANDVLFLMQLANHIKDQLKQKGLYEYVLEDCSSL 184


>gi|255647529|gb|ACU24228.1| unknown [Glycine max]
          Length = 345

 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 18/167 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R+  LC++QL+  D    +  I  G++        L      K+ H  
Sbjct: 62  IGFDCEGVDLC-RKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDC 120

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128
           + D   L++ FG+++     T+IA  L      +  L+D+    +G              
Sbjct: 121 KRDSEALYFQFGIKLNNAVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGISYDE 180

Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
              + +   Q    W+   LS++ ++ AA DV  L  +  Q  EKL 
Sbjct: 181 KEEVRVLLRQDPKFWTHRPLSEQMIRAAADDVRFLLYIYRQMMEKLN 227


>gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca]
          Length = 834

 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK   G+
Sbjct: 356 LTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCGV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
             +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWER 458


>gi|302833517|ref|XP_002948322.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
           nagariensis]
 gi|300266542|gb|EFJ50729.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
           nagariensis]
          Length = 191

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 2/154 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + +AVD E       +   C++Q+S       +  +A   +  P L  +  D +  K+FH
Sbjct: 20  EELAVDLEHHSHRSFQGFTCLMQISTRTTDYVVDTLALRNQLGPALARVFADPRVVKVFH 79

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L   F + +  +F T  A+R+        GL   L+ + G+   K  Q +DW
Sbjct: 80  GADSDVDWLQRDFSLFLVNMFDTGQAARVLGL--PSFGLAYLLESICGVQADKRYQMADW 137

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
               LS   L YA  D  +L  +  +  E+L  L
Sbjct: 138 RVRPLSPPMLHYARCDTHYLLYVYDKLREQLAAL 171


>gi|313812910|gb|EFS50624.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA1]
          Length = 412

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 15/164 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76
           IA+DTE         R C++QL   G GT  VD + +  A G K  A  L G       +
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K   
Sbjct: 92  WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +SDWS   L  +   YAA DV  L+ LR +    L  +G+ + A
Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEVGKEEWA 192


>gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 585

 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 16/149 (10%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
           +DTET    P+  RL  V L  G    +D + +    K AP L+  ++  K+    H  +
Sbjct: 27  IDTET---TPKDIRLFQVGLESGPIYVIDFLFV----KRAPELIKDII-AKKGVAGHNLK 78

Query: 84  FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143
           +D+  L   + +     F T + ++L     N+  L        G +I K +Q S+WS+ 
Sbjct: 79  YDLKYLM-KYDIHPYTTFDTMVGAQLIGL--NRVSLASVYNHFTGESIDKKEQFSNWSSK 135

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +L++ Q+ YAA DV     LRL + EKL+
Sbjct: 136 ELTESQIFYAAKDV---EVLRLLY-EKLK 160


>gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva]
          Length = 996

 Score = 43.1 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 12/137 (8%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
           DTET      R  +C+VQLS  +    +D  +I  G+ N  N   +  D K  KI H   
Sbjct: 502 DTETY-----RGFICLVQLSTPEENYIIDPFKIF-GKMNKLNR--LTTDPKILKIMHGAS 553

Query: 84  FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143
            D+  L   F + V  +F T+ A+++      +  L   +++   I ++K  Q SDWS  
Sbjct: 554 NDVVWLQRDFNIFVVNLFDTREAAKVLNL--AEQSLAKLIQKYFNIKLNKRFQLSDWSKR 611

Query: 144 DLSDEQLQYAASDVVHL 160
            L  E L YA  D  +L
Sbjct: 612 PLDAEMLDYACCDSHYL 628


>gi|297243353|ref|ZP_06927286.1| ribonuclease D [Gardnerella vaginalis AMD]
 gi|296888600|gb|EFH27339.1| ribonuclease D [Gardnerella vaginalis AMD]
          Length = 476

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F+  G+R R +F T+IA++L      + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 106 FFDIGLRPRALFDTEIAAKLLGR--KRFGLSSVTEYYLGLTLAKEHSAADWSYRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             YAA DV  L  L      +L++ G+   A      L+++ 
Sbjct: 164 RNYAALDVELLIELEEVMRGELKKQGKLSWAEEEFKHLLNKG 205


>gi|330829588|ref|YP_004392540.1| ribonuclease D [Aeromonas veronii B565]
 gi|328804724|gb|AEB49923.1| Ribonuclease D [Aeromonas veronii B565]
          Length = 370

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 1/108 (0%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+ ++ +  G     +  T++A+     Y    G    + E LG+ + K Q  
Sbjct: 76  ILHASGEDLELIQHQAGHLPNQMHDTQLATAFL-GYGVSVGFGALVNEFLGVELEKDQAR 134

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +DW A  L+  QL+YAA+DV +L  L  +   KL+  G+       C 
Sbjct: 135 TDWLARPLTPRQLEYAAADVFYLMPLYEKVMAKLRESGKFAWFEQECQ 182


>gi|289768333|ref|ZP_06527711.1| ribonuclease [Streptomyces lividans TK24]
 gi|289698532|gb|EFD65961.1| ribonuclease [Streptomyces lividans TK24]
          Length = 428

 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 14/162 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78
           +AVD E         R  +VQL   G G+  I  +A      P+L G+   + D   E +
Sbjct: 66  VAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC-----PDLSGLGAAIADA--EWV 118

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L     V  R +F T++A RL      + GL   ++ +LG  + K   + 
Sbjct: 119 LHAATQDLPCLREIGMVPTR-IFDTELAGRLA--GFPRVGLGAMVENVLGFVLEKGHSAV 175

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DWS   L +  L+YAA DV  L  LR    ++L R G+ + A
Sbjct: 176 DWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 217


>gi|68536154|ref|YP_250859.1| hypothetical protein jk1077 [Corynebacterium jeikeium K411]
 gi|260578851|ref|ZP_05846757.1| ribonuclease D (RNase D) [Corynebacterium jeikeium ATCC 43734]
 gi|68263753|emb|CAI37241.1| rnd [Corynebacterium jeikeium K411]
 gi|258602998|gb|EEW16269.1| ribonuclease D (RNase D) [Corynebacterium jeikeium ATCC 43734]
          Length = 423

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 7/170 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           IA+DTE        DR  ++QL   G GT  I   A  Q  A   +  +V+E  E + H 
Sbjct: 35  IAIDTERASAYRYDDRAFLIQLRRHGSGTFLIDPEAEPQ--ATRRMAEVVNEA-EWVLHA 91

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L    G R + +  T+IA +L      + GL   L     I + K + ++DWS
Sbjct: 92  AHTDLPCLM-ALGWRPQVLHDTQIAGQLL--GAERIGLSGMLDAYFDIQVPKDKGNADWS 148

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
              L+   L YAA DV  L  L     E+L + GR++     C  ++  A
Sbjct: 149 RRPLTQAMLNYAALDVEWLLELLDCCLEELAKTGRTEWYIQECQHVLASA 198


>gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda
           melanoleuca]
          Length = 885

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK   G+
Sbjct: 379 LTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCGV 436

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
             +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 437 ESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWER 481


>gi|265762514|ref|ZP_06091082.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255122|gb|EEZ26468.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 216

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 18/81 (22%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD------VVH 159
           + Y    G++D +L+++ GI     ISK+Q+ S+W AD L+D Q QYAA+D      + H
Sbjct: 127 QEYVRPFGIQDKSLQKIYGILFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH 186

Query: 160 LHALRLQFTEKLQRLGRSDLA 180
           L        E+L+R G  +LA
Sbjct: 187 L-------LEELKRTGNYELA 200


>gi|37523316|ref|NP_926693.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
 gi|35214320|dbj|BAC91688.1| glr3747 [Gloeobacter violaceus PCC 7421]
          Length = 195

 Score = 43.1 bits (100), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 27/150 (18%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV------------GML 70
           +AVDTET             Q+S G   V ++++  G   A +++              +
Sbjct: 30  LAVDTETAHWH---------QVSTGKNRVSLLQVWDGTSEAVSVIDCFAVDLTAFVEKTM 80

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL---- 126
            + +  K+ H   +D+A L      + R V CT   +R   T       +++LK L    
Sbjct: 81  RNWEIVKLIHNAPYDLAYL--GGAAQARSVVCTLQMARSIPTSRRGALERNSLKALSAHF 138

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASD 156
           LGI + K  Q+S+W+   L+ EQL YAA D
Sbjct: 139 LGIELDKRYQASNWALRPLTAEQLDYAALD 168


>gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii]
          Length = 2579

 Score = 43.1 bits (100), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 99   PVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
            P+F T IA+++      + G K    ++  LG+ + K  Q+SDWS+  LS EQL YAA D
Sbjct: 2070 PLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHLSQEQLLYAARD 2129

Query: 157  VV 158
              
Sbjct: 2130 AA 2131


>gi|116670217|ref|YP_831150.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
 gi|116610326|gb|ABK03050.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
          Length = 449

 Score = 43.1 bits (100), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           E  E I H    D+  L    G+    +F T++A+RL      + GL   +++LLG  ++
Sbjct: 115 EGVEWILHAASQDLPCL-SELGMWPDKLFDTELAARLA--GLPRVGLAAVIEQLLGFGLA 171

Query: 133 KAQQSSDWSADDLSDEQLQYAASDV 157
           K   ++DWS   L +  L+YAA DV
Sbjct: 172 KEHSAADWSTRPLPEPWLRYAALDV 196


>gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
 gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 16/180 (8%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAA 58
            T +  H+G +      + V   AVD E       +   C++Q+S    D  VD +++  
Sbjct: 151 FTLVEDHKGLVELAKKLKGVTEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRI 210

Query: 59  GQKNAPNLVGMLVDEK-----REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                   +G+ + E      + K+ H    DI  L   F + V  +F T  ASR+ +  
Sbjct: 211 -------YIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVLQME 263

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            N   L+  L    G+   K  Q++DW +  L DE ++YA  D  +L  +     ++LQ+
Sbjct: 264 RN--SLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQK 321


>gi|257068547|ref|YP_003154802.1| ribonuclease D [Brachybacterium faecium DSM 4810]
 gi|256559365|gb|ACU85212.1| ribonuclease D [Brachybacterium faecium DSM 4810]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           + +AVD E         R  +VQL +   GT  I  +A      P  +  L+ E RE + 
Sbjct: 40  EPVAVDAERASSYRYSSRAYLVQLRTEAAGTALIDPLAF---TMPATLRSLLAE-REWVL 95

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+    +F T++A+RL      + GL   +++ LG+ ++K   ++D
Sbjct: 96  HAAGQDLPSLA-EIGLEPGGLFDTELAARLL--GMERVGLGAVVEDTLGLRLAKEHSAAD 152

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           WS   L +  L YAA DV  L  +R    E+L+   + D A
Sbjct: 153 WSRRPLPEGWLTYAALDVEVLVEVRDVLRERLREACKEDWA 193


>gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda
           melanoleuca]
          Length = 887

 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK   G+
Sbjct: 356 LTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCGV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
             +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWER 458


>gi|53712323|ref|YP_098315.1| hypothetical protein BF1031 [Bacteroides fragilis YCH46]
 gi|60680496|ref|YP_210640.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343]
 gi|253563640|ref|ZP_04841097.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52215188|dbj|BAD47781.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60491930|emb|CAH06690.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343]
 gi|251947416|gb|EES87698.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301162033|emb|CBW21577.1| putative 3'-5' exonuclease [Bacteroides fragilis 638R]
          Length = 216

 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 18/81 (22%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD------VVH 159
           + Y    G++D +L+++ GI     ISK+Q+ S+W AD L+D Q QYAA+D      + H
Sbjct: 127 QEYVRPFGIQDKSLQKIYGILFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH 186

Query: 160 LHALRLQFTEKLQRLGRSDLA 180
           L        E+L+R G  +LA
Sbjct: 187 L-------LEELKRTGNYELA 200


>gi|325000861|ref|ZP_08121973.1| 3'-5' exonuclease [Pseudonocardia sp. P1]
          Length = 230

 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L     +R   +F T++A RL      + GL   ++ LLG+++ K  
Sbjct: 85  EWVLHAASQDLPCLG-ELDLRPASLFDTELAGRLA--GLPRVGLGPMVENLLGLSLEKGH 141

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L ++ L YAA DV  L  LR   T  L   G+ + A
Sbjct: 142 GAADWSRRPLPEDWLVYAALDVEVLIELRDVLTGLLDEQGKLEWA 186


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score = 42.7 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 23   IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            + +D ET GL   RDR+ ++ L+   GT  +   A     A     +      E +    
Sbjct: 915  VGLDLETTGLSHARDRVRLLSLATPSGTFLVDLFALPDPAAALAPLLEALTAVEVVGQNL 974

Query: 83   RFDIAVLFYTFGV--RVRPVFCTKIASRLTRT--YTNQHGLKDNLKELLGINISKAQQSS 138
             FD+  L     V  RVR    T +AS++      T  H LKD     LG+ + K  Q++
Sbjct: 975  GFDLPFLMRLGFVPGRVRD---TMLASQVLHAGNRTTGHSLKDLAHRHLGLELDKGLQTA 1031

Query: 139  DWSADDLSDEQLQYAASD 156
            DWS   L+D  L YAA D
Sbjct: 1032 DWSG-PLTDAHLGYAARD 1048


>gi|225021280|ref|ZP_03710472.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946013|gb|EEG27222.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 408

 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 15/170 (8%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
           AVDTE +      +R+C++Q+        +I + +  +   + +G ++ +    + H   
Sbjct: 40  AVDTERVSGFRYHNRVCLLQIRRAGAGTMLIDVESDPQATTDFMGRVLADT-GWVVHAAT 98

Query: 84  FDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            D+    Y   +R+RP  +F T++A R    +  +  L   ++  LG+ + K     DWS
Sbjct: 99  SDLP---YLEQLRLRPAQLFDTELAGRFLGFH--RVNLAAMVEYYLGVRLRKNHGGEDWS 153

Query: 142 ADDLSDEQLQYAASDVVHL----HALRLQFTEKLQRLGRSDLATSCCNFL 187
              +  E L YAA DV +L     A+R + T   Q+  + +     C++L
Sbjct: 154 RRPIPSEWLDYAALDVEYLLPLADAMRSELT---QQSPKDEWVAEECDYL 200


>gi|84496254|ref|ZP_00995108.1| putative ribonuclease D [Janibacter sp. HTCC2649]
 gi|84383022|gb|EAP98903.1| putative ribonuclease D [Janibacter sp. HTCC2649]
          Length = 428

 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 13/130 (10%)

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + E I H    D+A L    G+R   +F T++ +RL      + GL   ++  LG+ ++K
Sbjct: 116 RAEWILHAATQDLACLA-EVGLRPVQLFDTELGARLL--GLPRVGLAAVVEHYLGLALAK 172

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
              + DWS   L +  L+YAA DV  L  LR      L R  +S+ A         R E 
Sbjct: 173 EHSAVDWSTRPLPEPWLRYAALDVEVLTELRNLMGVDLARQDKSEWA---------RQEF 223

Query: 194 D-LLGWENVD 202
           + LL WE  +
Sbjct: 224 EALLTWEPTE 233


>gi|257454439|ref|ZP_05619701.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60]
 gi|257448205|gb|EEV23186.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60]
          Length = 403

 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 14/171 (8%)

Query: 20  VDAIAVDTETLGLMPRRDR----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           VD IA+DTE +    +RD     L ++Q++ G     I  I A +        +L D   
Sbjct: 39  VDTIALDTEFI----KRDTFFPILALIQINTGKA---IYLIDAPKLYLEEFWEVLADIPT 91

Query: 76  EKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             + H    D+ + +    +  +R VF T+I      T  N  G + +L+E + +++ K 
Sbjct: 92  -VVLHACGEDLGIYYLLSNLPALRNVFDTQIGLGFL-TGENSLGYQKSLQETIAVHVDKG 149

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  SDW    L+ EQ  YA  DV +L  + +    +L   G    A   C 
Sbjct: 150 ESQSDWLQRPLTPEQESYAVDDVRYLLPMFVAIKTQLIEQGLWQYAVEDCQ 200


>gi|169234702|ref|NP_001108472.1| PM-Scl autoantigen-like protein [Bombyx mori]
 gi|18700467|dbj|BAB85201.1| PM-Scl autoantigen-like protein [Bombyx mori]
 gi|22474519|dbj|BAC10623.1| PM-Scl autoantigen-like protein [Bombyx mori]
          Length = 451

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 20  VDAIAVDTE------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           V+ IAVD E        GL       C++Q+S  +G   II   A +++   L  +  D 
Sbjct: 138 VEQIAVDVEHHSYRDLSGLYLILGITCLIQISTDEGGDFIIDALAVREHIHKLNVVFTDP 197

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K+ K+FH    D+  L   FGV +  +F T  A++          LK  L +  G++  K
Sbjct: 198 KKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAK--SLGLPALSLKFLLMKYCGVDTDK 255

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160
             + +DW    L D  ++YA  D  +L
Sbjct: 256 TYRLADWRIRPLPDVLIKYARMDTHYL 282


>gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis]
          Length = 680

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D  A+D E           C+VQLS G     I  +A  Q +   L  +L + +  K+ H
Sbjct: 136 DRTALDVEHHSTHTYSGLTCLVQLSTGSKDYLIDSLALRQ-DMHLLAPVLSNPRICKVIH 194

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA-QQSSD 139
            G  D   L   FG+ +  VF T+ A ++   +  Q  L   L+   GI   K+  Q +D
Sbjct: 195 GGGNDAVWLQRDFGLFLVNVFDTEKACQVLGYH--QRSLGALLQRFCGIQADKSLGQRAD 252

Query: 140 WSADDLSDEQLQYAASDVVHL 160
           W    LS E + YA  DV HL
Sbjct: 253 WRRRPLSAELIDYARRDVQHL 273


>gi|84995770|ref|XP_952607.1| DNA binding protein [Theileria annulata strain Ankara]
 gi|65302768|emb|CAI74875.1| DNA binding protein, putative [Theileria annulata]
          Length = 247

 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 11/125 (8%)

Query: 35  RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94
           +R +  IVQ+  GD T   I +       PN  GM +     ++ H    D+ +LF  +G
Sbjct: 101 KRCKPSIVQIC-GDSTC-FIYLIYKIGYIPN-KGMFITSFILQVSHGAPSDMRLLFKHYG 157

Query: 95  VRVRPVFCTKIA--SRLTRTYT-NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ 151
            +     CT       L + Y      LK+  + +L + ++K QQ S+W AD L  +Q+ 
Sbjct: 158 TK-----CTNFVDLKDLCKDYNIYPASLKNATESVLNLKLNKKQQCSNWEADKLVPDQIS 212

Query: 152 YAASD 156
           YA++D
Sbjct: 213 YASTD 217


>gi|307325177|ref|ZP_07604381.1| 3'-5' exonuclease [Streptomyces violaceusniger Tu 4113]
 gi|306889323|gb|EFN20305.1| 3'-5' exonuclease [Streptomyces violaceusniger Tu 4113]
          Length = 425

 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 14/162 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78
           +AVD E         R  +VQL   G GT  I  +       P+L G+   + D   E +
Sbjct: 62  VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV-----GCPDLSGLGAAIADA--EWV 114

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L     +  R +F T++A RL      + GL   ++ +LG  + K   + 
Sbjct: 115 LHAATQDLPCLRDIGMIPAR-IFDTELAGRLA--GFARVGLGAMVENILGYALEKGHSAV 171

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DWS   L +  L YAA DV  L  LR    E+L+R  + + A
Sbjct: 172 DWSTRPLPEPWLHYAALDVELLVDLRDALEEELERQSKLEWA 213


>gi|29828773|ref|NP_823407.1| ribonuclease D [Streptomyces avermitilis MA-4680]
 gi|29605878|dbj|BAC69942.1| putative ribonuclease D [Streptomyces avermitilis MA-4680]
          Length = 426

 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L     V  R +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 112 EWVLHAATQDLPCLREIGMVPTR-LFDTELAGRLA--GFPRVGLGAMVESVLGFVLEKGH 168

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A
Sbjct: 169 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 213


>gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia]
          Length = 669

 Score = 42.7 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 2/156 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVD E    +      C++QLS       I      ++    L  +  + +  K+FH  
Sbjct: 220 IAVDLEHNHSISYLGVTCLIQLSTRTQDYIIDPFPLWKQLGDMLSVVFTNPRIVKVFHGA 279

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+  L   FG+ +  +F T  AS+       Q+  +  L E    +  K  Q++DW+ 
Sbjct: 280 DNDVQWLQRDFGLYIVNLFDTFQASK--ELLLMQNSFQFLLSEYCKKSTDKTYQTADWTQ 337

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             LSDE ++YA  D  +L  +  +  + L++L + +
Sbjct: 338 RPLSDEMIKYAQIDTHYLLYIYDRMRQDLKKLNKPN 373


>gi|325963026|ref|YP_004240932.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469113|gb|ADX72798.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A+RL      + GL   +++LLG  ++K  
Sbjct: 118 EWILHAASQDLPCL-SELGMWPDKLFDTELAARLA--GLPRVGLAAVIEQLLGFGLAKEH 174

Query: 136 QSSDWSADDLSDEQLQYAASDV 157
            ++DWS   L +  L+YAA DV
Sbjct: 175 SAADWSTRPLPEPWLRYAALDV 196


>gi|314988091|gb|EFT32182.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA2]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76
           IA+DTE         R C++QL   G GT  VD + +  A G K  A  L G       +
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K   
Sbjct: 92  WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 149 ASDWSRRPLPRDWPGYAALDVELLNDLREKILSDLHEAGKEEWA 192


>gi|119026007|ref|YP_909852.1| hypothetical protein BAD_0989 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765591|dbj|BAF39770.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G+  + +F T+IA+RL      + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 106 FDELGMEPQRLFDTEIAARLL--GLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             YAA DV  L  L  +   +L+R G+ + A    ++ +
Sbjct: 164 RNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYAL 202


>gi|313801939|gb|EFS43173.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA2]
          Length = 412

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76
           IA+DTE         R C++QL   G GT  VD + +  A G K  A  L G       +
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K   
Sbjct: 92  WILHAATQDMPCLAMD-GLRPDALFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192


>gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia]
          Length = 676

 Score = 42.7 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 2/156 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVD E    +      C++QLS       I      ++    L  +  + K  K+FH  
Sbjct: 220 IAVDLEHNHQISYLGITCLIQLSTRSQDYIIDPFPLWKQLGDMLSVIFANPKIVKVFHGA 279

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+  L   FG+ +  +F T  AS+  +    Q+  +  L E    +  K  Q++DW+ 
Sbjct: 280 ENDVQWLQRDFGLYIVNLFDTFHASKELQLM--QNSFQFLLSEYCKKSTDKTYQTADWTQ 337

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L DE ++YA  D  +L  +  +  + L++L + +
Sbjct: 338 RPLPDEMIKYAQIDTHYLLYIYDRMRQDLKKLNKPN 373


>gi|333023774|ref|ZP_08451838.1| putative ribonuclease [Streptomyces sp. Tu6071]
 gi|332743626|gb|EGJ74067.1| putative ribonuclease [Streptomyces sp. Tu6071]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIFH 80
           +AVD E         R  +VQL   G GT  I  +A      P+L G+       E   H
Sbjct: 68  VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC-----PDLSGLGAALANAEWDLH 122

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   + DW
Sbjct: 123 AATQDLPCL-REIGMVPHSLFDTELAGRLA--GFPRVGLGAMVENVLGYTLEKGHSAVDW 179

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           S   L +  L+YAA DV  L  LR    ++L+R G+ + A
Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWA 219


>gi|237836145|ref|XP_002367370.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211965034|gb|EEB00230.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii
           ME49]
 gi|221505945|gb|EEE31580.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii VEG]
          Length = 672

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 36  RDRLCIVQL-SPGDGTVDII-RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
           R  L ++QL SP   TV  I +++A     P L  +L+     K+      ++  L   F
Sbjct: 196 RPPLALIQLASP---TVACIWQLSALGGLPPGLTALLLRADVVKVTQGATGEVEALQREF 252

Query: 94  GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
           GV  R   C   A+      TN   L+      L   + K+ Q S WS D LS EQ  YA
Sbjct: 253 GVSPRNFLCLHAAAIALGCATNSRSLQALCGLFLERFLDKSLQLSTWSRDALSPEQCMYA 312

Query: 154 ASDV 157
           A+D 
Sbjct: 313 ATDA 316


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 12/118 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------LVG 68
           R+    A+DTET GL PR  +L  + ++   G    I +  G ++ P          L  
Sbjct: 314 RHAGRFAIDTETTGLNPRHAKLVGISVATAPGRAAYIPL--GHEDGPQLPRPLALERLAP 371

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +L D    KIFH  +FD+ VL         PV  T + S       + HG+ D L  L
Sbjct: 372 VLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGM-DELSAL 428


>gi|302522528|ref|ZP_07274870.1| ribonuclease D [Streptomyces sp. SPB78]
 gi|302431423|gb|EFL03239.1| ribonuclease D [Streptomyces sp. SPB78]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIFH 80
           +AVD E         R  +VQL   G GT  I  +A      P+L G+       E   H
Sbjct: 68  VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC-----PDLSGLGAALANAEWDLH 122

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   + DW
Sbjct: 123 AATQDLPCL-REIGMVPHSLFDTELAGRLA--GFPRVGLGAMVENVLGYTLEKGHSAVDW 179

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           S   L +  L+YAA DV  L  LR    ++L+R G+ + A
Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWA 219


>gi|154488712|ref|ZP_02029561.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis
           L2-32]
 gi|154082849|gb|EDN81894.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis
           L2-32]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G+  + +F T+IA+RL      + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 106 FDELGMEPQRLFDTEIAARLL--GLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             YAA DV  L  L  +   +L+R G+ + A    ++ +
Sbjct: 164 RNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYAL 202


>gi|189096244|pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium
           Adolescentis
          Length = 440

 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G+  + +F T+IA+RL      + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 108 FDELGMEPQRLFDTEIAARLL--GLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDW 165

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             YAA DV  L  L  +   +L+R G+ + A    ++ +
Sbjct: 166 RNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYAL 204


>gi|318061059|ref|ZP_07979780.1| ribonuclease D [Streptomyces sp. SA3_actG]
 gi|318079172|ref|ZP_07986504.1| ribonuclease D [Streptomyces sp. SA3_actF]
          Length = 431

 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD-EKREKIFH 80
           +AVD E         R  +VQL   G GT  I  +A      P+L G+       E   H
Sbjct: 68  VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC-----PDLSGLGAALANAEWDLH 122

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   + DW
Sbjct: 123 AATQDLPCL-REIGMVPHSLFDTELAGRLA--GFPRVGLGAMVENVLGYTLEKGHSAVDW 179

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           S   L +  L+YAA DV  L  LR    ++L+R G+ + A
Sbjct: 180 STRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWA 219


>gi|312375236|gb|EFR22650.1| hypothetical protein AND_14417 [Anopheles darlingi]
          Length = 782

 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 4/151 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +  D E +    +R  + ++QL+   G   +IR+    K    L  +L D+   K+    
Sbjct: 78  LGFDCEWVSNQGQRRPVALLQLASHRGLCALIRLCMINKLPQELYDLLNDDNIIKVGVSP 137

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDW 140
             D  +L   + ++V      +  +   R      G+     E+LG+ + K  +   SDW
Sbjct: 138 YEDARLLREDYKLKVESTLDLRFMAE--RAGLEPFGIARLANEVLGLTLDKHWKIRCSDW 195

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            A DLSD Q++YAASD      L  +F  KL
Sbjct: 196 EAPDLSDRQIKYAASDAHVAVELFKKFAYKL 226


>gi|302541899|ref|ZP_07294241.1| putative ribonuclease D [Streptomyces hygroscopicus ATCC 53653]
 gi|302459517|gb|EFL22610.1| putative ribonuclease D [Streptomyces himastatinicus ATCC 53653]
          Length = 425

 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 69/160 (43%), Gaps = 10/160 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LVDEKREKIFH 80
           +AVD E         R  +VQL   G GT  I  +       P+L G+       E + H
Sbjct: 62  VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV-----GCPDLSGLGAAVADAEWVLH 116

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   + DW
Sbjct: 117 AATQDLPCL-RDIGMVPDRLFDTELAGRLA--GFARVGLGAMVENILGYALEKGHSAVDW 173

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           S   L +  L YAA DV  L  LR    E+L R G+ + A
Sbjct: 174 STRPLPEPWLHYAALDVELLVDLRDALEEELTRQGKLEWA 213


>gi|220912416|ref|YP_002487725.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6]
 gi|219859294|gb|ACL39636.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6]
          Length = 443

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A+RL      + GL   +++LLG  ++K  
Sbjct: 118 EWILHAATQDLPCL-SELGMWPDKLFDTELAARLA--GLPRVGLAAVIEQLLGFGLAKEH 174

Query: 136 QSSDWSADDLSDEQLQYAASDV 157
            ++DWS   L +  L+YAA DV
Sbjct: 175 SAADWSTRPLPEPWLRYAALDV 196


>gi|46579495|ref|YP_010303.1| 3' exoribonuclease family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602955|ref|YP_967355.1| 3'-5' exonuclease [Desulfovibrio vulgaris DP4]
 gi|46448909|gb|AAS95562.1| 3'- 5' exonuclease domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563184|gb|ABM28928.1| 3'-5' exonuclease [Desulfovibrio vulgaris DP4]
          Length = 202

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           HGL++     LGI ISK  Q S+WS  +L  +Q+ YAA+D
Sbjct: 144 HGLRNLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATD 183


>gi|302554895|ref|ZP_07307237.1| ribonuclease D [Streptomyces viridochromogenes DSM 40736]
 gi|302472513|gb|EFL35606.1| ribonuclease D [Streptomyces viridochromogenes DSM 40736]
          Length = 474

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L     V  R +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 116 EWVLHAATQDLPCLREIGMVPTR-LFDTELAGRLA--GFPRVGLGAMVEGVLGFVLEKGH 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ D A
Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWA 217


>gi|308234712|ref|ZP_07665449.1| ribonuclease D [Gardnerella vaginalis ATCC 14018]
 gi|311114520|ref|YP_003985741.1| hypothetical protein HMPREF0421_20636 [Gardnerella vaginalis ATCC
           14019]
 gi|310946014|gb|ADP38718.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 481

 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F+  G+R R +F T+IA++L      + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 130 FFDIGLRPRALFDTEIAAKLLGR--KRFGLSSVTEYYLGLTLAKEHSAADWSYRPLPRDW 187

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGR 176
             YAA DV  L  L    + +L++ G+
Sbjct: 188 RNYAALDVELLIELEEVMSGELKKQGK 214


>gi|225455316|ref|XP_002271858.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 510

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           KELLGI++SK  Q SDWS   L++EQ  YAA+D
Sbjct: 160 KELLGISLSKELQCSDWSHRPLTEEQKTYAATD 192


>gi|328885873|emb|CCA59112.1| Ribonuclease D [Streptomyces venezuelae ATCC 10712]
          Length = 427

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 115 EWILHAATQDLPCL-RDIGMLPTSLFDTELAGRLA--GFPRVGLGAMVESVLGYALEKGH 171

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A
Sbjct: 172 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 216


>gi|260772433|ref|ZP_05881349.1| ribonuclease D [Vibrio metschnikovii CIP 69.14]
 gi|260611572|gb|EEX36775.1| ribonuclease D [Vibrio metschnikovii CIP 69.14]
          Length = 267

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +LL + + K++  +DW A  LS++QL+YAA+DV +L  +  Q  +K+ + G  D
Sbjct: 19  DLLNVELDKSESRTDWLARPLSEKQLEYAAADVFYLLPMFEQLLDKVTQAGWWD 72


>gi|23465521|ref|NP_696124.1| hypothetical protein BL0948 [Bifidobacterium longum NCC2705]
 gi|23326181|gb|AAN24760.1| narrowly conserved hypothetical protein [Bifidobacterium longum
           NCC2705]
          Length = 433

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G++ + +F T+IA+RL   +  + GL    +  LGI ++K   ++DWS   L  + 
Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             YAA DV  L  L       L+  G+ + A 
Sbjct: 168 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 199


>gi|311233310|gb|ADP86164.1| 3'-5' exonuclease [Desulfovibrio vulgaris RCH1]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           HGL++     LGI ISK  Q S+WS  +L  +Q+ YAA+D
Sbjct: 143 HGLRNLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATD 182


>gi|300781041|ref|ZP_07090895.1| ribonuclease D [Corynebacterium genitalium ATCC 33030]
 gi|300532748|gb|EFK53809.1| ribonuclease D [Corynebacterium genitalium ATCC 33030]
          Length = 394

 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 69/172 (40%), Gaps = 14/172 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAPNLVGMLVDEKREK 77
            AVDTE        DR  ++Q+   G GT     + +R       AP + G       + 
Sbjct: 26  FAVDTERASAYRYDDRAFLIQIHRRGAGTFLFQPEGLREELTSALAPAVNG------EDW 79

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+  L    G+    +F T +A R+      +  L   + E  G+ + K    
Sbjct: 80  IIHAAPEDLPSL-AELGLHPGTLFDTALAGRIAGF--EKPNLAAMVAEFCGVELEKGHGR 136

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            DWS   L  E L YAA DV++L  L     E L  LG+ D A      ++D
Sbjct: 137 EDWSLPTLPREWLDYAALDVIYLPDLAEAQAELLGGLGKLDYAEQEFAHIVD 188


>gi|225352286|ref|ZP_03743309.1| hypothetical protein BIFPSEUDO_03902 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157533|gb|EEG70872.1| hypothetical protein BIFPSEUDO_03902 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 243

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G++ + +F T+IA+RL      + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 106 FNDLGLKPQRLFDTEIAARLLGM--KRFGLAAVTEHYLGLTLAKEHSAADWSYRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             YAA DV  L  L      +LQ+ G+ + A    ++ +
Sbjct: 164 RNYAALDVELLIELETTMRAELQKQGKIEWAEEEFDYAL 202


>gi|302143936|emb|CBI23041.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           KELLGI++SK  Q SDWS   L++EQ  YAA+D
Sbjct: 160 KELLGISLSKELQCSDWSHRPLTEEQKTYAATD 192


>gi|227546007|ref|ZP_03976056.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239621937|ref|ZP_04664968.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322688886|ref|YP_004208620.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|322690861|ref|YP_004220431.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227213641|gb|EEI81490.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239515128|gb|EEQ54995.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|320455717|dbj|BAJ66339.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460222|dbj|BAJ70842.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 433

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G++ + +F T+IA+RL   +  + GL    +  LGI ++K   ++DWS   L  + 
Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             YAA DV  L  L       L+  G+ + A 
Sbjct: 168 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 199


>gi|46190415|ref|ZP_00206459.1| COG0349: Ribonuclease D [Bifidobacterium longum DJO10A]
 gi|189439553|ref|YP_001954634.1| ribonuclease D [Bifidobacterium longum DJO10A]
 gi|189427988|gb|ACD98136.1| Ribonuclease D [Bifidobacterium longum DJO10A]
          Length = 433

 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G++ + +F T+IA+RL   +  + GL    +  LGI ++K   ++DWS   L  + 
Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             YAA DV  L  L       L+  G+ + A 
Sbjct: 168 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 199


>gi|317482293|ref|ZP_07941314.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916309|gb|EFV37710.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
          Length = 433

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G++ + +F T+IA+RL   +  + GL    +  LGI ++K   ++DWS   L  + 
Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             YAA DV  L  L       L+  G+ + A 
Sbjct: 168 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 199


>gi|119962304|ref|YP_947556.1| ribonuclease D [Arthrobacter aurescens TC1]
 gi|119949163|gb|ABM08074.1| putative ribonuclease D [Arthrobacter aurescens TC1]
          Length = 453

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A+RL      + GL   +++LLG  ++K  
Sbjct: 118 EWILHAASQDLPCL-SELGMWPDKLFDTELAARLA--GLPRVGLAAVIEQLLGFGLAKEH 174

Query: 136 QSSDWSADDLSDEQLQYAASDV 157
            ++DWS   L +  L+YAA DV
Sbjct: 175 SAADWSTRPLPEPWLRYAALDV 196


>gi|71278230|ref|YP_270192.1| ribonuclease D [Colwellia psychrerythraea 34H]
 gi|71143970|gb|AAZ24443.1| ribonuclease D [Colwellia psychrerythraea 34H]
          Length = 379

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 11/142 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE +       +L ++Q+  G+  + +I   A    AP    +L +E   K+ H  
Sbjct: 25  LAIDTEFVRTRTLYAKLGLLQVCDGE-QLALIDPLAIDDLAP-FWALLTNENITKVLHAC 82

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK----DNLKELLGINISKAQQSS 138
             D+ V F T G   +PV    I S++  ++   HGL       +K    I + K++  +
Sbjct: 83  SEDLEV-FLTAG-NCKPV--NLIDSQIMMSFLG-HGLSLGYAAMVKHFTDIELDKSESRT 137

Query: 139 DWSADDLSDEQLQYAASDVVHL 160
           DW+   L+++QL YA++DV HL
Sbjct: 138 DWTKRPLTEKQLDYASADVDHL 159


>gi|312132962|ref|YP_004000301.1| rnd [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773944|gb|ADQ03432.1| Rnd [Bifidobacterium longum subsp. longum BBMN68]
          Length = 408

 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G++ + +F T+IA+RL   +  + GL    +  LGI ++K   ++DWS   L  + 
Sbjct: 85  FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 142

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             YAA DV  L  L       L+  G+ + A 
Sbjct: 143 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 174


>gi|289427165|ref|ZP_06428881.1| 3'-5' exonuclease [Propionibacterium acnes J165]
 gi|289159634|gb|EFD07822.1| 3'-5' exonuclease [Propionibacterium acnes J165]
          Length = 395

 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76
           IA+DTE         R C++QL   G GT  VD + +  A G K  A  L G       +
Sbjct: 21  IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 74

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K   
Sbjct: 75  WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 131

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 132 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 175


>gi|328754581|gb|EGF68197.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA2]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76
           IA+DTE         R C++QL   G GT  VD + +  A G K  A  L G       +
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K   
Sbjct: 92  WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192


>gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens]
          Length = 679

 Score = 42.4 bits (98), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 458


>gi|313827523|gb|EFS65237.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA2]
 gi|315108646|gb|EFT80622.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA2]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76
           IA+DTE         R C++QL   G GT  VD + +  A G K  A  L G       +
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K   
Sbjct: 92  WILHAATQDLPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192


>gi|289425030|ref|ZP_06426807.1| 3'-5' exonuclease [Propionibacterium acnes SK187]
 gi|289154008|gb|EFD02696.1| 3'-5' exonuclease [Propionibacterium acnes SK187]
 gi|313792108|gb|EFS40209.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA1]
 gi|313838766|gb|EFS76480.1| 3'-5' exonuclease [Propionibacterium acnes HL086PA1]
 gi|314962767|gb|EFT06867.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA1]
 gi|315077982|gb|EFT50033.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA2]
 gi|327453174|gb|EGE99828.1| 3'-5' exonuclease [Propionibacterium acnes HL092PA1]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76
           IA+DTE         R C++QL   G GT  VD + +  A G K  A  L G       +
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K   
Sbjct: 92  WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192


>gi|221485002|gb|EEE23292.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 672

 Score = 42.4 bits (98), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 36  RDRLCIVQLSPGDGTVDII-RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94
           R  L ++QL+    TV  I +++A     P L  +L+     K+      ++  L   FG
Sbjct: 196 RPPLALIQLA--SPTVACIWQLSALGGLPPGLTALLLRADVVKVTQGATGEVEALQREFG 253

Query: 95  VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
           V  R   C   A+      TN   L+      L   + K+ Q S WS D LS EQ  YAA
Sbjct: 254 VSPRNFLCLHAAAIALGCATNSRSLQALCGLFLERFLDKSLQLSTWSRDALSPEQCMYAA 313

Query: 155 SDV 157
           +D 
Sbjct: 314 TDA 316


>gi|323453102|gb|EGB08974.1| hypothetical protein AURANDRAFT_63530 [Aureococcus anophagefferens]
          Length = 549

 Score = 42.4 bits (98), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 16/166 (9%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVD-IIRIAAGQKNAPNLVGMLVDEKREKI 78
           VD   VD E           C+VQ+S  D  VD ++   A +     L     D    K+
Sbjct: 226 VDVFGVDLEAHAEHSYESIACLVQISTAD--VDYVVDALALRFELRALAPAFADPNIRKV 283

Query: 79  FHYGR-FDIAVLFYTFGVRVRPVFCTKIASR-----------LTRTYTNQHGLKDNLKEL 126
           FH  +  DI  L   FG+ V  VF T+ A+R           L   Y +   +    ++ 
Sbjct: 284 FHACQGVDIPRLQRDFGIFVVNVFDTQEAARCAARVLGAPLGLVALYASAGVISTARRDE 343

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           L  ++ +A Q+ DW +  LS  QL+YA  D  HL  L      +L+
Sbjct: 344 LE-SLKRAYQNCDWRSRPLSPAQLEYAVCDARHLVDLEAYLNRELR 388


>gi|314918304|gb|EFS82135.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA1]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76
           IA+DTE         R C++QL   G GT  VD + +  A G K  A  L G       +
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K   
Sbjct: 92  WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192


>gi|50842545|ref|YP_055772.1| ribonuclease D [Propionibacterium acnes KPA171202]
 gi|295130624|ref|YP_003581287.1| 3'-5' exonuclease [Propionibacterium acnes SK137]
 gi|50840147|gb|AAT82814.1| ribonuclease D [Propionibacterium acnes KPA171202]
 gi|291375251|gb|ADD99105.1| 3'-5' exonuclease [Propionibacterium acnes SK137]
 gi|313764422|gb|EFS35786.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA1]
 gi|313772196|gb|EFS38162.1| 3'-5' exonuclease [Propionibacterium acnes HL074PA1]
 gi|313807552|gb|EFS46039.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA2]
 gi|313810061|gb|EFS47782.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA1]
 gi|313815960|gb|EFS53674.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA1]
 gi|313818593|gb|EFS56307.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA2]
 gi|313820361|gb|EFS58075.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA1]
 gi|313822834|gb|EFS60548.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA2]
 gi|313825235|gb|EFS62949.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA1]
 gi|313830390|gb|EFS68104.1| 3'-5' exonuclease [Propionibacterium acnes HL007PA1]
 gi|313833761|gb|EFS71475.1| 3'-5' exonuclease [Propionibacterium acnes HL056PA1]
 gi|314915414|gb|EFS79245.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA4]
 gi|314920115|gb|EFS83946.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA3]
 gi|314925249|gb|EFS89080.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA3]
 gi|314931637|gb|EFS95468.1| 3'-5' exonuclease [Propionibacterium acnes HL067PA1]
 gi|314955692|gb|EFT00094.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA1]
 gi|314958090|gb|EFT02193.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA1]
 gi|314959968|gb|EFT04070.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA2]
 gi|314967866|gb|EFT11965.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA1]
 gi|314973393|gb|EFT17489.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA1]
 gi|314976071|gb|EFT20166.1| 3'-5' exonuclease [Propionibacterium acnes HL045PA1]
 gi|314978539|gb|EFT22633.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA2]
 gi|314983908|gb|EFT28000.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA1]
 gi|314989898|gb|EFT33989.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA3]
 gi|315084278|gb|EFT56254.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA2]
 gi|315085621|gb|EFT57597.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA3]
 gi|315088327|gb|EFT60303.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA1]
 gi|315095938|gb|EFT67914.1| 3'-5' exonuclease [Propionibacterium acnes HL038PA1]
 gi|315098569|gb|EFT70545.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA2]
 gi|315101430|gb|EFT73406.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA1]
 gi|315105619|gb|EFT77595.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA1]
 gi|327326219|gb|EGE68009.1| putative ribonuclease D [Propionibacterium acnes HL096PA2]
 gi|327330288|gb|EGE72037.1| putative ribonuclease D [Propionibacterium acnes HL097PA1]
 gi|327331905|gb|EGE73642.1| putative ribonuclease D [Propionibacterium acnes HL096PA3]
 gi|327443108|gb|EGE89762.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA2]
 gi|327445890|gb|EGE92544.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA2]
 gi|327448129|gb|EGE94783.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA1]
 gi|327450750|gb|EGE97404.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA3]
 gi|327453907|gb|EGF00562.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA2]
 gi|328753437|gb|EGF67053.1| 3'-5' exonuclease [Propionibacterium acnes HL020PA1]
 gi|328754168|gb|EGF67784.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA1]
 gi|328760820|gb|EGF74386.1| putative ribonuclease D [Propionibacterium acnes HL099PA1]
 gi|332675465|gb|AEE72281.1| ribonuclease D [Propionibacterium acnes 266]
          Length = 412

 Score = 42.4 bits (98), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGT--VDIIRI--AAGQKN-APNLVGMLVDEKRE 76
           IA+DTE         R C++QL   G GT  VD + +  A G K  A  L G       +
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAGT------Q 91

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K   
Sbjct: 92  WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PRVSLGPMVERYCGVTLLKEHS 148

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 149 ASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192


>gi|291517068|emb|CBK70684.1| Ribonuclease D [Bifidobacterium longum subsp. longum F8]
          Length = 398

 Score = 42.4 bits (98), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G++ + +F T+IA+RL   +  + GL    +  LGI ++K   ++DWS   L  + 
Sbjct: 75  FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 132

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             YAA DV  L  L       L+  G+ + A 
Sbjct: 133 RNYAALDVEVLIELETMMRRDLKAAGKDEWAA 164


>gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 964

 Score = 42.4 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLV---GMLVDEKREKIFHYGRFDIAVLFYTFGV 95
           +C +Q+S  +  +D +  A   +N  N +    + +++ + KI H    DI  L   F +
Sbjct: 793 VCTIQISTVN--MDFMIDAMALRNQINQLLNKSLFLNKTKIKILHGCENDIKWLKNDFDI 850

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155
            +  +F T  A  + +     + LK+  ++ LG+ + K+ Q SDW    L    + YA  
Sbjct: 851 DIVNLFDTMFAEMIIKNKQQSYSLKNLSQDYLGVELDKSYQISDWRIRPLPTPMMNYARV 910

Query: 156 D 156
           D
Sbjct: 911 D 911


>gi|298252714|ref|ZP_06976508.1| ribonuclease D [Gardnerella vaginalis 5-1]
 gi|297533078|gb|EFH71962.1| ribonuclease D [Gardnerella vaginalis 5-1]
          Length = 476

 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F+  G+R R +F T+IA++L      + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 106 FFDIGLRPRALFDTEIAAKLLGR--KRFGLSSVTEYYLGLTLAKEHSAADWSYRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             YAA DV  L  L      +L++ G+   A      L+ + 
Sbjct: 164 RNYAALDVELLIELEEVMRVELKKQGKLSWAEEEFKHLLSKG 205


>gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis]
          Length = 673

 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWER 458


>gi|261855126|ref|YP_003262409.1| ribonuclease D [Halothiobacillus neapolitanus c2]
 gi|261835595|gb|ACX95362.1| ribonuclease D [Halothiobacillus neapolitanus c2]
          Length = 374

 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           +DTE +       +LC+VQ++  D    I  +A     AP L   L       +FH    
Sbjct: 37  IDTEFMRESTYFPQLCLVQIATPDAIWLIDPLAV--PLAP-LWHELNRTSSPLVFHAAEQ 93

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           D+ +++   G   + +  ++IA+        Q G  + +  LL + + K+Q  ++W+   
Sbjct: 94  DLELIYLDSGALPQTLRDSQIAAAFL-GLGEQIGYANLVNRLLHVELDKSQSRTNWAQRP 152

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           L+ EQ  YAA DV  L ++     E+L    R       C  L D
Sbjct: 153 LTAEQQHYAADDVRFLRSMYPLLREQLATKNRLAWFDEECAALSD 197


>gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis]
 gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis]
          Length = 552

 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    D+  L   FG+ V  +F T  ASR+      +  L   LK+  G+   K  Q
Sbjct: 325 KVFHGADMDVGWLQRDFGIYVVNMFDTGQASRVLAL--ERFSLAFLLKKFCGVTADKQYQ 382

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            +DW    L +E ++YA  D  +L  +  +   +L R G  +
Sbjct: 383 LADWRIRPLPEEMIRYAREDTHYLLYIHDRLRNELIRTGNEN 424


>gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus]
          Length = 705

 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 333 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 390

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 391 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 421


>gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus]
          Length = 497

 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444


>gi|270283861|ref|ZP_06193723.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093]
 gi|270277581|gb|EFA23435.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093]
          Length = 262

 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G+R   +F T++A+RL      + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 106 FADLGIRPHALFDTELAARLLGL--ERFGLAYVTERYLGLTLAKEHSAADWSHRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
             YAA DV  L  LR      L+  G+ + A     + ++
Sbjct: 164 RNYAALDVELLIELREAMMRDLKAAGKEEWARQEFAYALE 203


>gi|86740037|ref|YP_480437.1| 3'-5' exonuclease [Frankia sp. CcI3]
 gi|86566899|gb|ABD10708.1| 3'-5' exonuclease [Frankia sp. CcI3]
          Length = 427

 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 96  EWVLHAASQDLPCL-SELGLRPSLLFDTELAGRLL--GYERVGLGIMVERVLGYGLEKGH 152

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALR 164
            ++DWS   L +  L+YAA DV  L  LR
Sbjct: 153 SAADWSTRPLPEPWLRYAALDVELLVELR 181


>gi|290956585|ref|YP_003487767.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260646111|emb|CBG69204.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 397

 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LVDEKREKIFH 80
           +AVD E         R  +VQL   G GT  I  +A      P+L G+       E + H
Sbjct: 32  VAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC-----PDLSGLGEALSGVEWVLH 86

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L     V  R +F T++A RL      + GL   ++ +LG  + K   + DW
Sbjct: 87  AATQDLPCLREIDMVPTR-IFDTELAGRLA--GFPRVGLGAMVEGVLGYVLEKGHSAVDW 143

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           S   L +  L+YAA DV  L  LR    ++L R G+ + A
Sbjct: 144 STRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 183


>gi|257056403|ref|YP_003134235.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
 gi|256586275|gb|ACU97408.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
          Length = 413

 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+    +F T++A RL      +  L   ++ LLG  + K  
Sbjct: 101 EWVLHAASQDLPCLA-ELGLHPPSLFDTELAGRLA--GYQRVALGTLVESLLGYQLEKGH 157

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L  + L YAA DV  L  LR +  E+L   G+ + A
Sbjct: 158 SAADWSRRPLPLDWLNYAALDVELLLPLREKLEEELAASGKLEWA 202


>gi|187466071|emb|CAQ51625.1| exosome component 10 [Mus musculus]
          Length = 727

 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 355 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 412

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 413 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 443


>gi|123226358|emb|CAM23946.1| exosome component 10 [Mus musculus]
          Length = 728

 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444


>gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo]
 gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis]
          Length = 879

 Score = 42.0 bits (97), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+D E       R  +C+VQ++  D    +D   I         L  +  D +  K+ H
Sbjct: 338 VAIDVEHHSTQSYRGFVCLVQITGADDDWVIDPFSIF---DEMWRLNDVTTDPRILKVMH 394

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L   FGV V  +F T  A+ +    +  H L   ++  LGI++ K+ Q +DW
Sbjct: 395 GAESDILWLQRDFGVYVVNLFDTLKAADVL-CLSCGHSLSSLVRHFLGIHLDKSYQLADW 453

Query: 141 SADDLSDEQLQYAASDVVHL 160
               +  + L YA +D  +L
Sbjct: 454 RIRPIPRDMLTYATADTHYL 473


>gi|78357431|ref|YP_388880.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78219836|gb|ABB39185.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           HGL++    LL   ISKA Q S+WS  +LS +Q+ YAA+D
Sbjct: 143 HGLRNLAANLLEFRISKAAQCSNWSNLELSRQQISYAATD 182


>gi|146329754|ref|YP_001210006.1| ribonuclease D [Dichelobacter nodosus VCS1703A]
 gi|146233224|gb|ABQ14202.1| ribonuclease D [Dichelobacter nodosus VCS1703A]
          Length = 355

 Score = 42.0 bits (97), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDV-VHLHALRLQFTEKLQRLGRSDLAT 181
           ++  LGI++ K++  SDW A  L++EQ QYAA+DV + L A  L     LQRL R     
Sbjct: 120 VQHYLGIDLDKSETRSDWLARPLTNEQCQYAANDVGLLLQAYPL-LCADLQRLNRMHWWQ 178

Query: 182 SCCNFLM 188
             C  L+
Sbjct: 179 EECQNLL 185


>gi|790213|gb|AAB65809.1| ORFQ [Dichelobacter nodosus]
          Length = 289

 Score = 42.0 bits (97), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%)

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++  LGI++ K++  SDW A  L++EQ QYAA+DV  L          LQRL R      
Sbjct: 54  VQHYLGIDLDKSETRSDWLARPLTNEQCQYAANDVGLLLQAYPLLCADLQRLNRMHWWQE 113

Query: 183 CCNFLM 188
            C  L+
Sbjct: 114 ECQNLL 119


>gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
 gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
          Length = 512

 Score = 42.0 bits (97), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 2/143 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    IAVD E       +  +C++Q+S       +  +       P L  +  +    K
Sbjct: 241 RASSEIAVDLENHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVLRSVFANPSIRK 300

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    DI  L   FG+ V  +F T  A+R+ R    + GL   L+    +   K  Q 
Sbjct: 301 VIHGSDRDILWLQRDFGIYVCNLFDTGQAARVLRM--ERFGLAFLLQTFCEVTPDKRYQL 358

Query: 138 SDWSADDLSDEQLQYAASDVVHL 160
           +DW    LS E L+YA  D  +L
Sbjct: 359 ADWRLRPLSAEMLKYAREDTHYL 381


>gi|219870644|ref|YP_002475019.1| ribonuclease D [Haemophilus parasuis SH0165]
 gi|219690848|gb|ACL32071.1| ribonuclease D [Haemophilus parasuis SH0165]
          Length = 375

 Score = 41.6 bits (96), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IA+DTE +       +L ++QL  G     +D + I     +      +L +E   K+ H
Sbjct: 29  IALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLSIT----DFSPFTALLANENVLKVLH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL----LGINISKAQQ 136
               D+ V  + F    +P+  T++ +          G+     +L    L + + K   
Sbjct: 85  ACGEDLEVFQHYFKQLPQPMLDTQVMAGFVGL-----GISIGFAKLALHYLEVELDKGAS 139

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-GRSDLATSCCNFLMDR 190
            +DW +  LS+ QLQYA +DV +L  +  +  E L +   ++ +   C   L  R
Sbjct: 140 RTDWLSHPLSEIQLQYACADVWYLLPIYHKLAEDLAKTPWQTAVVEECATLLAKR 194


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 41/214 (19%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +D ET GL P    + ++Q++  +  V +I    G  N   L   +   K  K+ H  
Sbjct: 69  VGLDIETTGLDPHTSEISLIQIAAPNRPVILIEFR-GITNKETLRRFIEHPKIPKVGHNL 127

Query: 83  RFDIAVLFYTFGVR------VRPVFCTKIASR-------------------LTRTYTNQH 117
            F+I  L    G+       +  +  +++ +                    LTR+  N+ 
Sbjct: 128 AFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPIPDLTRSIKNKK 187

Query: 118 GLKDNLKE--------------LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            LK  L                 LG ++ K+ Q SDW    L+ EQLQYAA+D   +  L
Sbjct: 188 KLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDW-GKPLTQEQLQYAANDAAVVLPL 246

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           R     K+     +D        L   A++ L+G
Sbjct: 247 REALRNKIIDNQLTDAIQVELGALARVAQMGLMG 280


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 12/118 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------LVG 68
           R+    A+DTET GL PR  +L  + ++   G    + +  G ++ P          L  
Sbjct: 337 RHAGRFAIDTETTGLNPRHAKLVGISVATAPGRAAYVPL--GHEDGPQLPRPLALERLAP 394

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +L D    KIFH  +FD+ VL         PV  T + S       + HG+ D L  L
Sbjct: 395 VLADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGM-DELSAL 451


>gi|303272145|ref|XP_003055434.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463408|gb|EEH60686.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 590

 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 26/43 (60%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           GL    K  LG  +SKA+Q SDWS   L+  QL YAA+D  +L
Sbjct: 238 GLATLTKFTLGATLSKAEQCSDWSRRPLTAAQLSYAAADAFYL 280


>gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL
           Brener]
 gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
          Length = 768

 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 25/172 (14%)

Query: 5   RVHEGDIP-AECAARYVDA----------------IAVDTETLGLMPRRDRLCIVQLS-- 45
           RV    +P A+C  R+VDA                IAVD E       +   C++Q+S  
Sbjct: 255 RVETPYLPLAQCPLRFVDATVDLEDVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTR 314

Query: 46  PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105
             D  +D +++ +       L  + ++    K+ H  R DI  L   FG+ +   F T I
Sbjct: 315 SEDILIDCLKLRSSMHL---LAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGI 371

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           A    +T    HGL   +     + + K  Q++DW    +  E   YA  D 
Sbjct: 372 A---LQTLHMPHGLAFAVDHFCQVKLDKKYQTADWRIRPIPAEMATYARQDT 420


>gi|226954026|ref|ZP_03824490.1| ribonuclease D, processes tRNA [Acinetobacter sp. ATCC 27244]
 gi|226835237|gb|EEH67620.1| ribonuclease D, processes tRNA [Acinetobacter sp. ATCC 27244]
          Length = 286

 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 36/79 (45%)

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q   ++ LK  L I I K Q  SDW A  L+ +Q+ YAA+DV++L  L       LQ  G
Sbjct: 19  QVSYQNALKTYLDIEIEKDQTRSDWLARPLTPQQISYAANDVLYLPRLAEALKRDLQSKG 78

Query: 176 RSDLATSCCNFLMDRAELD 194
                   C  L     +D
Sbjct: 79  IYHYVLEDCQNLTKEIGID 97


>gi|313674143|ref|YP_004052139.1| 3'-5' exonuclease [Marivirga tractuosa DSM 4126]
 gi|312940841|gb|ADR20031.1| 3'-5' exonuclease [Marivirga tractuosa DSM 4126]
          Length = 194

 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155
           + RP     I S   +    Q G K+     L   ISKAQQ+S+W   +L+  Q+ YAA+
Sbjct: 117 KFRPEGFEDIGSIARQNGMLQSGAKNLTAIFLNKRISKAQQTSNWEKSELTQAQIDYAAT 176

Query: 156 DVVHLHALRLQFTEKLQRLG 175
           D      L L+  E  +R+G
Sbjct: 177 DAY----LGLKVYEVFERIG 192


>gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens]
          Length = 529

 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 458


>gi|159464515|ref|XP_001690487.1| hypothetical protein CHLREDRAFT_169205 [Chlamydomonas reinhardtii]
 gi|158279987|gb|EDP05746.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 185

 Score = 41.6 bits (96), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           E+LG  + K QQ SDW+A  LS+ QL YAA+DV  L
Sbjct: 34  EVLGKPLDKEQQRSDWAARPLSESQLAYAAADVACL 69


>gi|114553924|ref|XP_001136359.1| PREDICTED: exosome component 10 isoform 2 [Pan troglodytes]
          Length = 811

 Score = 41.6 bits (96), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482


>gi|227488764|ref|ZP_03919080.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542239|ref|ZP_03972288.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091186|gb|EEI26498.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227182068|gb|EEI63040.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 386

 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 8/180 (4%)

Query: 13  AECAARYVDA--IAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGM 69
           A+CAA       IA+DTE        DR  ++QL   G GT  +I   A + + P ++  
Sbjct: 21  ADCAATLSPGAPIAIDTERASGYTYDDRAYLIQLRQEGIGTF-LIDAEALRDDLPPVLAP 79

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
            V+     + H    DI  L    G+    +F T++A R      ++  L      +LGI
Sbjct: 80  AVNAC-PWVLHAAVSDIPCL-ADVGMTAPTLFDTEVAGRFLGF--DKVNLAAMTNRILGI 135

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           ++ K   + +WS   +    L YAA DV  L  L    T  L+R G+   A +    ++D
Sbjct: 136 DLKKGHAAENWSKRPIPRSWLIYAALDVELLIELADTLTALLEREGKLAWAEAEFQHIID 195


>gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus]
 gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus]
 gi|296479174|gb|DAA21289.1| exosome component 10 [Bos taurus]
          Length = 702

 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCSV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
             +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWER 458


>gi|114553922|ref|XP_001136272.1| PREDICTED: exosome component 10 isoform 1 [Pan troglodytes]
          Length = 768

 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482


>gi|296453936|ref|YP_003661079.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
 gi|296183367|gb|ADH00249.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
          Length = 433

 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G++ + +F T+IA+RL   +  + GL    +  LGI ++K   ++DWS   L  + 
Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             YAA DV  L  L       L+  G+ + A 
Sbjct: 168 RNYAALDVEVLIELETLMRRDLKAAGKDEWAA 199


>gi|72387778|ref|XP_844313.1| ribosomal RNA processing protein 6 [Trypanosoma brucei TREU927]
 gi|62359465|gb|AAX79902.1| ribosomal RNA processing protein 6 [Trypanosoma brucei]
 gi|70800846|gb|AAZ10754.1| ribosomal RNA processing protein 6 [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 736

 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E       +   C++Q+S    D  VD +++ A   N   +  + +     K+FH
Sbjct: 268 IAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRA---NMYLMAPVFLQPNIVKVFH 324

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+  L   FG+ +  +F T IA    +     H L   +     + ++K  Q++DW
Sbjct: 325 GAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSLAFAVDHFCQVKLNKKYQTADW 381

Query: 141 SADDLSDEQLQYAASD 156
               +  E + YA  D
Sbjct: 382 RVRPIPAEMVSYAQQD 397


>gi|227549136|ref|ZP_03979185.1| ribonuclease [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078777|gb|EEI16740.1| ribonuclease [Corynebacterium lipophiloflavum DSM 44291]
          Length = 390

 Score = 41.6 bits (96), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 4/157 (2%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
           A+DTE        DR  +VQ++  D     +    G ++A       V    + I H   
Sbjct: 27  AIDTERASSFRYDDRAFLVQVNRRDAGT-FLFAPEGHRDALREALAPVIGGTDWILHAAG 85

Query: 84  FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143
            D+  L    G+    +F T+IA+RL      +  L   + E  G+ +       DWS  
Sbjct: 86  EDLPSL-AELGLHPGTLFDTEIAARLA--GFERPNLAAMVGEFTGVTLDNGYGREDWSTI 142

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            L  +   YAA DVV+L AL    TE L   G+ + A
Sbjct: 143 PLPLQWQAYAADDVVYLSALAEGLTEVLDAAGKLEAA 179


>gi|300741364|ref|ZP_07071385.1| putative ribonuclease D [Rothia dentocariosa M567]
 gi|300380549|gb|EFJ77111.1| putative ribonuclease D [Rothia dentocariosa M567]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D   L    G+R R +F T++ +RL      +  L   ++ELLG  + K  
Sbjct: 110 EWIIHAATQDFPSLDL-LGMRPRLLFDTELGARLA--GLERVNLGAVVEELLGYKLEKKH 166

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
              DWS   L +  L YA  DV  L  LR    E L+  G+ + A     +L
Sbjct: 167 SQEDWSQRPLPESWLNYACLDVDVLADLRDALEEVLEDQGKLEYARQEFAYL 218


>gi|311113446|ref|YP_003984668.1| ribonuclease D [Rothia dentocariosa ATCC 17931]
 gi|310944940|gb|ADP41234.1| ribonuclease D [Rothia dentocariosa ATCC 17931]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D   L    G+R R +F T++ +RL      +  L   ++ELLG  + K  
Sbjct: 110 EWIIHAATQDFPSLDL-LGMRPRLLFDTELGARLA--GLERVNLGAVVEELLGYKLEKKH 166

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
              DWS   L +  L YA  DV  L  LR    E L+  G+ + A     +L
Sbjct: 167 SQEDWSQRPLPESWLNYACLDVDVLADLRDALEEVLEDQGKLEYARQEFAYL 218


>gi|302537554|ref|ZP_07289896.1| ribonuclease D [Streptomyces sp. C]
 gi|302446449|gb|EFL18265.1| ribonuclease D [Streptomyces sp. C]
          Length = 428

 Score = 41.6 bits (96), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 116 EWILHAATQDLPCL-REIGMVPTSLFDTELAGRLA--GFPRVGLGAMVEGVLGYALEKGH 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A
Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 217


>gi|213692580|ref|YP_002323166.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524041|gb|ACJ52788.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458732|dbj|BAJ69353.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 433

 Score = 41.6 bits (96), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G++ + +F T+IA+RL   +  + GL    +  LGI ++K   ++DWS   L  + 
Sbjct: 110 FAEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDW 167

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             YAA DV  L  L       L+  G+ + A 
Sbjct: 168 RNYAALDVEVLIELETLMRRDLKAAGKDEWAA 199


>gi|297561776|ref|YP_003680750.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846224|gb|ADH68244.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L     +R R +F T++A RL      + GL   ++ LL + ++K  
Sbjct: 107 EVVLHAAHQDLPCL-SEINLRPRSLFDTELAGRLL--GYQRVGLGFMVERLLHLRLAKEH 163

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L ++ L+YAA DV  L  LR     +L+  G+ + A
Sbjct: 164 SAVDWSQRPLPEDWLRYAALDVEILIDLRDSLEVELEETGKLEWA 208


>gi|163841118|ref|YP_001625523.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209]
 gi|162954594|gb|ABY24109.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209]
          Length = 480

 Score = 41.6 bits (96), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A+R+      + GL   +++LLG  ++K  
Sbjct: 153 EWILHAASQDLPCL-SELGMWPSALFDTELAARIA--GLPKVGLAAVVEQLLGFGLAKEH 209

Query: 136 QSSDWSADDLSDEQLQYAASDV 157
            ++DWS   L +  L+YAA DV
Sbjct: 210 SAADWSTRPLPEPWLRYAALDV 231


>gi|261327471|emb|CBH10446.1| ribosomal RNA processing protein 6, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 738

 Score = 41.6 bits (96), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E       +   C++Q+S    D  VD +++ A   N   +  + +     K+FH
Sbjct: 268 IAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRA---NMYLMAPVFLQPNIVKVFH 324

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+  L   FG+ +  +F T IA    +     H L   +     + ++K  Q++DW
Sbjct: 325 GAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSLAFAVDHFCQVKLNKKYQTADW 381

Query: 141 SADDLSDEQLQYAASD 156
               +  E + YA  D
Sbjct: 382 RVRPIPAEMVSYAQQD 397


>gi|254566215|ref|XP_002490218.1| Exonuclease component of the nuclear exosome [Pichia pastoris
           GS115]
 gi|238030014|emb|CAY67937.1| Exonuclease component of the nuclear exosome [Pichia pastoris
           GS115]
 gi|328350615|emb|CCA37015.1| exosome complex exonuclease RRP6 [Pichia pastoris CBS 7435]
          Length = 717

 Score = 41.2 bits (95), Expect = 0.077,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 66/158 (41%), Gaps = 7/158 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           D IAVD E   L      +C++Q+S    D  VD +++    K  P L  +  D    K+
Sbjct: 232 DVIAVDLEHHDLRTYYGLVCLMQISTRNQDYIVDTLKLRF--KLQP-LNKVFTDPSIVKV 288

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH    DI  L    G+ V  +F T  AS+L      +H L   L+       SK  Q +
Sbjct: 289 FHGAFMDIIWLQRDLGLYVVSLFDTFHASKLLGF--PKHSLAYLLETYAKFKTSKKYQLA 346

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           DW    L+   L YA SD   L  +  Q    L   G+
Sbjct: 347 DWRVRPLTKPLLAYARSDTHFLLYIFDQLNNMLIESGK 384


>gi|14250912|emb|CAC39261.1| Rrp6p homologue [Trypanosoma brucei]
          Length = 703

 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E       +   C++Q+S    D  VD +++ A   N   +  + +     K+FH
Sbjct: 235 IAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRA---NMYLMAPVFLQPNIVKVFH 291

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+  L   FG+ +  +F T IA    +     H L   +     + ++K  Q++DW
Sbjct: 292 GAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSLAFAVDHFCQVKLNKKYQTADW 348

Query: 141 SADDLSDEQLQYAASD 156
               +  E + YA  D
Sbjct: 349 RVRPIPAEMVSYAQQD 364


>gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B]
 gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B]
          Length = 372

 Score = 41.2 bits (95), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 13/154 (8%)

Query: 13  AECAARYVDA--IAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           AE  A+ +D   +A+DTE      RRD     + +VQ++  D  V +I         P L
Sbjct: 13  AEVVAQVIDGDFVAIDTE----FRRRDTFWPEVALVQIATAD-QVWLIDPLPLTDTGP-L 66

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L      K+ H    D+ V     GV   P+F T+ A+ L   Y         ++ +
Sbjct: 67  AELLQKSTLTKVLHSAGEDLEVFQAWLGVLPSPLFDTQKAAALL-GYGFGLSYAKLVEAV 125

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +++ K + +SDW    L+  Q +YAA DV +L
Sbjct: 126 CQVSLDKDETNSDWLVRPLTSAQCRYAAQDVTYL 159


>gi|241670620|ref|XP_002399861.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215506210|gb|EEC15704.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 853

 Score = 41.2 bits (95), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 21/154 (13%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKIFH 80
           +A+D E + L PR   L ++QL+   G V +  + +  +  +   L  +L  +   K+ H
Sbjct: 551 LALDAEGVNLGPR-GPLTLLQLATAAGEVFLFDVQSTPQLFDEGKLKDILESQTIVKVVH 609

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ----HGLKD-NLKELLGI-----N 130
             R D A LFY FG+R++ VF T+ A+  T    +Q    H +K+ +L  L G+     N
Sbjct: 610 DCRNDSAALFYQFGIRLQNVFDTQ-AAHATLQQQDQGKPVHKVKNVSLGTLCGLYGGPPN 668

Query: 131 ISKAQQSS-------DWSADDLSDEQLQYAASDV 157
             + Q  S        WS   LS++ + +AA DV
Sbjct: 669 PRREQVKSLYRRDQKFWSRRPLSEDMVFHAAFDV 702


>gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 [Equus caballus]
          Length = 886

 Score = 41.2 bits (95), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +  +K  Q
Sbjct: 363 KVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKRYCSVESNKQYQ 420

Query: 137 SSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
            +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 421 LADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWER 458


>gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated
           autoantigen homolog [Mus musculus]
          Length = 831

 Score = 41.2 bits (95), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444


>gi|254416561|ref|ZP_05030312.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196176527|gb|EDX71540.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 303

 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 12/94 (12%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHGLKDNLKELLGI--N 130
           EK+FH   +D   L      + + V CT   ++    Y      + LK  L E  GI   
Sbjct: 82  EKVFHNASYDRKFLG---KHKAKNVTCTLELAKTIPYYRLPVPNYQLK-TLTEYFGICPQ 137

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVV---HLH 161
           + K +Q+ DW    LS  QL YAA DVV   HLH
Sbjct: 138 VDKTEQTGDWRKRPLSPRQLDYAAKDVVYVAHLH 171


>gi|293347809|ref|XP_002726703.1| PREDICTED: rCG30986-like isoform 2 [Rattus norvegicus]
          Length = 860

 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLNYARDDTHYL 444


>gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus]
          Length = 916

 Score = 41.2 bits (95), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 359 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 416

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 417 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 447


>gi|293347807|ref|XP_002726702.1| PREDICTED: rCG30986-like isoform 1 [Rattus norvegicus]
 gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus]
          Length = 885

 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLNYARDDTHYL 444


>gi|149911424|ref|ZP_01900042.1| RNase D, processes tRNA precursor [Moritella sp. PE36]
 gi|149805532|gb|EDM65537.1| RNase D, processes tRNA precursor [Moritella sp. PE36]
          Length = 376

 Score = 41.2 bits (95), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A+CA   V+ +A+DTE +        L + QL  G  T  +  +A    ++   +  L+D
Sbjct: 17  AQCAE--VEVLAIDTEFIRQRTYYPILGLFQLYTGTETYLVDPLAVEDLSS---LWQLLD 71

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131
            +   + H    D+ V F T   +    F  T+IA+       +  G    + E   I +
Sbjct: 72  -RHPVVLHACSEDLDV-FMTVANKFPDFFHDTQIAAAFCGL-GSSLGFGGLVAEYQKITL 128

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            K +  S+W A  L+++QL YAA+DV HL     +   KL  LG  D
Sbjct: 129 DKGESRSNWLARPLTEKQLSYAAADVYHLLPCWNELEAKLNELGYYD 175


>gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus]
 gi|123226356|emb|CAM23944.1| exosome component 10 [Mus musculus]
 gi|123248912|emb|CAM21194.1| exosome component 10 [Mus musculus]
          Length = 862

 Score = 41.2 bits (95), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444


>gi|118372761|ref|XP_001019575.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89301342|gb|EAR99330.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 881

 Score = 41.2 bits (95), Expect = 0.088,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 11/161 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+D E           C++Q+S    D  VD+  +    K+   L  +  D+   K+ H
Sbjct: 266 VAIDLEHHSYRSFNGITCLMQISSRTKDYIVDVFSV---WKSLHKLNAVTTDKNIVKVLH 322

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L   FG+ +  +F T  A+R     +  + L   L+ +  +   K  Q +DW
Sbjct: 323 GADMDIQWLQRDFGIYIVNLFDTGQAARTLSMPS--YALAYLLQSISKVPTDKKYQLADW 380

Query: 141 SADDLSDEQLQYAASDVVHLHA----LRLQFTEKLQRLGRS 177
               L  E + YA SD  +L +    LR+Q   K  + G++
Sbjct: 381 RIRPLPREMISYARSDTHYLLSIYDNLRIQLVSKALQQGQN 421


>gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus]
          Length = 864

 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 358 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 415

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 416 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 446


>gi|187466046|emb|CAQ52093.1| exosome component 10 [Mus musculus]
 gi|187466070|emb|CAQ51624.1| exosome component 10 [Mus musculus]
          Length = 861

 Score = 41.2 bits (95), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 355 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 412

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 413 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 443


>gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus]
 gi|123226357|emb|CAM23945.1| exosome component 10 [Mus musculus]
 gi|123248913|emb|CAM21195.1| exosome component 10 [Mus musculus]
          Length = 887

 Score = 41.2 bits (95), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444


>gi|320583859|gb|EFW98072.1| hypothetical protein HPODL_0702 [Pichia angusta DL-1]
          Length = 729

 Score = 41.2 bits (95), Expect = 0.096,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 13/162 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV---DEKREKIF 79
           IAVD E           C++QL+  D   D +      +  P+LV + V   D    K+F
Sbjct: 241 IAVDLEHHDYRTYHGITCLMQLTT-DTKKDYLIDPLSPELRPHLVNLNVIFTDPNIVKVF 299

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    DI  L    G+ V  +F T  ASR       +H L   L+  +    SK  Q +D
Sbjct: 300 HGAFMDIIWLQRDLGLYVVSLFDTYHASR--ELGLGRHSLAHLLETYVKFKTSKKWQLAD 357

Query: 140 WSADDLSDEQLQYAASDV-------VHLHALRLQFTEKLQRL 174
           W    L+ E   YA +D          +H+  +Q  +KL+++
Sbjct: 358 WRMRPLNSEMKNYAKADTHFLIEVFYKMHSELVQNPDKLKKV 399


>gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus]
          Length = 887

 Score = 41.2 bits (95), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444


>gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7]
 gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7]
          Length = 2016

 Score = 41.2 bits (95), Expect = 0.097,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 24   AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81
             +D ET GL    + + ++Q++  +  V I  +    K      L  +L ++   KI   
Sbjct: 1468 GLDIETTGLEVFDENIRLIQIAVENYPVIIYDMFNINKKDILDGLRKVLENKNIIKIIQN 1527

Query: 82   GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSD 139
            G+FD   L +    ++  +F T IAS+L     N +G K N  +++ L + + K QQ+S 
Sbjct: 1528 GKFDAKFLLHN-NFKIENIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVILDKQQQNSV 1586

Query: 140  WSADDLSDEQLQYAASD 156
            W+   L++ QL YAA D
Sbjct: 1587 WNNSLLNNNQLFYAARD 1603


>gi|187466045|emb|CAQ52092.1| exosome component 10 [Mus musculus]
 gi|187466069|emb|CAQ51623.1| exosome component 10 [Mus musculus]
          Length = 886

 Score = 41.2 bits (95), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 355 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 412

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 413 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 443


>gi|8928261|sp|P56960|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen
           PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma
           autoantigen 2 homolog
 gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated
           autoantigen homolog [Mus musculus]
 gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus]
 gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus]
          Length = 887

 Score = 41.2 bits (95), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   L+   G+
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--ARHSLDHLLRLYCGV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444


>gi|298481453|ref|ZP_06999645.1| 3'-5' exonuclease domain protein [Bacteroides sp. D22]
 gi|295086916|emb|CBK68439.1| Ribonuclease D [Bacteroides xylanisolvens XB1A]
 gi|298272317|gb|EFI13886.1| 3'-5' exonuclease domain protein [Bacteroides sp. D22]
          Length = 222

 Score = 40.8 bits (94), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           Y  Q G++D +L+++  I     ISK+Q+ S+W AD LSD Q QYAA+D
Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177


>gi|317051081|ref|YP_004112197.1| 3'-5' exonuclease [Desulfurispirillum indicum S5]
 gi|316946165|gb|ADU65641.1| 3'-5' exonuclease [Desulfurispirillum indicum S5]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 29/53 (54%)

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           IA   TR    Q GL+     L G  +SK  + SDWS   LS EQ++YAA+D 
Sbjct: 133 IAHLATRLGIKQTGLRTLCALLFGKRLSKKARCSDWSRKHLSAEQIKYAAADA 185


>gi|260171573|ref|ZP_05757985.1| hypothetical protein BacD2_06865 [Bacteroides sp. D2]
 gi|315919887|ref|ZP_07916127.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693762|gb|EFS30597.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           Y  Q G++D +L+++  I     ISK+Q+ S+W AD LSD Q QYAA+D
Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177


>gi|153807650|ref|ZP_01960318.1| hypothetical protein BACCAC_01932 [Bacteroides caccae ATCC 43185]
 gi|149130012|gb|EDM21224.1| hypothetical protein BACCAC_01932 [Bacteroides caccae ATCC 43185]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 12/76 (15%)

Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASDV---VHLHALR 164
           Y  Q G++D +L+++  I     ISK+Q+ S+W AD LSD Q QYAA+D    ++++ L 
Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNL- 187

Query: 165 LQFTEKLQRLGRSDLA 180
               ++L+R G  ++A
Sbjct: 188 ---LQELKRTGNYEIA 200


>gi|297203084|ref|ZP_06920481.1| ribonuclease D [Streptomyces sviceus ATCC 29083]
 gi|297148288|gb|EDY56116.2| ribonuclease D [Streptomyces sviceus ATCC 29083]
          Length = 262

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM-LVDEKREKIFH 80
           +AVD E         R  +VQL   G GT  I  +A      P+L G+       E + H
Sbjct: 66  VAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC-----PDLSGLGEALSGAEWVLH 120

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L     +  R +F T++A R+      + GL   ++ +LG  + K   + DW
Sbjct: 121 AATQDLPCLREIGMIPSR-LFDTELAGRIA--GFPRVGLGAMVEGVLGFVLEKGHSAVDW 177

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           S   L +  L+YAA DV  L  LR    ++L R G+ + A
Sbjct: 178 STRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWA 217


>gi|224135103|ref|XP_002321984.1| predicted protein [Populus trichocarpa]
 gi|222868980|gb|EEF06111.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           KE+LGI++SK  Q SDWS   L++EQ  YAA+D
Sbjct: 164 KEVLGISLSKELQCSDWSHRPLTEEQKTYAAAD 196


>gi|224283333|ref|ZP_03646655.1| Ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
 gi|313140484|ref|ZP_07802677.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
 gi|313132994|gb|EFR50611.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
          Length = 428

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G+  + +F T+IA+R+   +  + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 106 FADIGLTPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             YAA DV  L  LR +   +L+  G+   A
Sbjct: 164 RNYAALDVELLIELRRKMQRELKSQGKDGWA 194


>gi|160887119|ref|ZP_02068122.1| hypothetical protein BACOVA_05135 [Bacteroides ovatus ATCC 8483]
 gi|293370879|ref|ZP_06617424.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|299148614|ref|ZP_07041676.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23]
 gi|156107530|gb|EDO09275.1| hypothetical protein BACOVA_05135 [Bacteroides ovatus ATCC 8483]
 gi|292634095|gb|EFF52639.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|298513375|gb|EFI37262.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           Y  Q G++D +L+++  I     ISK+Q+ S+W AD LSD Q QYAA+D
Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177


>gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta]
          Length = 884

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWER 482


>gi|237715608|ref|ZP_04546089.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408617|ref|ZP_06085163.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646256|ref|ZP_06723909.1| 3'-5' exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294805802|ref|ZP_06764678.1| 3'-5' exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|229444317|gb|EEO50108.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353482|gb|EEZ02576.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638389|gb|EFF56754.1| 3'-5' exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294446978|gb|EFG15569.1| 3'-5' exonuclease [Bacteroides xylanisolvens SD CC 1b]
          Length = 222

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           Y  Q G++D +L+++  I     ISK+Q+ S+W AD LSD Q QYAA+D
Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177


>gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta]
          Length = 884

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWER 458


>gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens]
 gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens]
 gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens]
 gi|56204111|emb|CAI22106.1| exosome component 10 [Homo sapiens]
          Length = 860

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 458


>gi|237721388|ref|ZP_04551869.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449184|gb|EEO54975.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           Y  Q G++D +L+++  I     ISK+Q+ S+W AD LSD Q QYAA+D
Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177


>gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens]
          Length = 884

 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482


>gi|315103391|gb|EFT75367.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA2]
          Length = 412

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 17/165 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRI--AAGQKN-APNLVGMLVDEKR 75
           IA+DTE         R C++QL   DG+    VD + +  A G K  A  L G       
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLR-RDGSSTHLVDPLALGGAVGLKPLAKALAGT------ 90

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           + I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K  
Sbjct: 91  QWILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PKVSLGPMVEHYCGVTLLKEH 147

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 148 SASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192


>gi|290975670|ref|XP_002670565.1| predicted protein [Naegleria gruberi]
 gi|284084125|gb|EFC37821.1| predicted protein [Naegleria gruberi]
          Length = 491

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 33/124 (26%)

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTY------------- 113
            ++ DE+ EK+FHY  FD+   F       + V CT +I+S+    +             
Sbjct: 187 NIMFDERCEKVFHYKTFDLK--FLGGASYCKNVSCTHEISSKYIPYHLLPISNYKLDTLS 244

Query: 114 -----------------TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
                            +N  G  + +KELL  +  K  Q SDW    LS  Q++YA  D
Sbjct: 245 HYLTSRIISHINNVSQTSNDIGNLEEIKELLTYSNKKELQESDWFERPLSPTQVEYATQD 304

Query: 157 VVHL 160
           V+ L
Sbjct: 305 VITL 308


>gi|332827669|gb|EGK00408.1| hypothetical protein HMPREF9455_03256 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 181

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 32/170 (18%)

Query: 4   IRVHEGDIPAECAARYVD---AIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAA 58
           I V + +  AE AA Y+    AI  DTET     +    ++ ++QLS  D T  + R+  
Sbjct: 8   IIVVQSESEAEKAAAYLKKQTAIGFDTETRPAFRKGVSHQIALMQLSTDD-TCFLFRL-- 64

Query: 59  GQKNAPNLVGM-------LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111
                 N++G+       LV+   +KI    + D + +       V   F         +
Sbjct: 65  ------NIIGLPDCLAEILVNPAIKKIGLSLKDDFSAIHKRNAAFVPSNFIE------LQ 112

Query: 112 TYTNQHGLKDN-LKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           ++   +G++DN L+ + GI     ISK Q+ S+W AD LSD Q  YAA D
Sbjct: 113 SFVKNYGIEDNGLQRIYGILFEKRISKGQRLSNWEADVLSDAQKMYAAID 162


>gi|332807620|ref|XP_001136452.2| PREDICTED: exosome component 10 isoform 3 [Pan troglodytes]
          Length = 884

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482


>gi|332250403|ref|XP_003274341.1| PREDICTED: exosome component 10 [Nomascus leucogenys]
          Length = 912

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWER 482


>gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens]
 gi|8928564|sp|Q01780|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen
           PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma
           overlap syndrome-associated autoantigen; AltName:
           Full=Polymyositis/scleroderma autoantigen 100 kDa;
           Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma
           autoantigen 2
 gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens]
 gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens]
 gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens]
 gi|56204112|emb|CAI22107.1| exosome component 10 [Homo sapiens]
 gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens]
 gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct]
 gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct]
 gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct]
          Length = 885

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 458


>gi|255007833|ref|ZP_05279959.1| putative 3'-5' exonuclease [Bacteroides fragilis 3_1_12]
 gi|313145540|ref|ZP_07807733.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134307|gb|EFR51667.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 215

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 18/81 (22%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD------VVH 159
           + Y    G++D +L+++ GI     ISK+Q+ S+W AD L+D Q QYAA+D      + H
Sbjct: 127 QEYVRPFGIQDKSLQKIYGILFREKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH 186

Query: 160 LHALRLQFTEKLQRLGRSDLA 180
           L        + L+R G  +LA
Sbjct: 187 L-------LQDLKRTGNYELA 200


>gi|114553916|ref|XP_514382.2| PREDICTED: exosome component 10 isoform 5 [Pan troglodytes]
          Length = 885

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 414 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 458


>gi|314966730|gb|EFT10829.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA2]
          Length = 412

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 17/165 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRI--AAGQKN-APNLVGMLVDEKR 75
           IA+DTE         R C++QL   DG+    VD + +  A G K  A  L G       
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLR-RDGSSTHLVDPLALGGAVGLKPLAKALAGT------ 90

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           + I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K  
Sbjct: 91  QWILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PKVSLGPMVEHYCGVTLLKEH 147

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 148 SASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192


>gi|306836261|ref|ZP_07469243.1| ribonuclease D [Corynebacterium accolens ATCC 49726]
 gi|304567853|gb|EFM43436.1| ribonuclease D [Corynebacterium accolens ATCC 49726]
          Length = 406

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 67/154 (43%), Gaps = 19/154 (12%)

Query: 13  AECAARY---VDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAP 64
           AE AAR      A A+DTE        DR  ++Q+   G GT+    +  R    Q  AP
Sbjct: 23  AEAAARLQAGTGAFAIDTERASGYRYDDRAFLIQIRRRGAGTMLFAPEGHRAELAQALAP 82

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR-TYTNQHGLKDNL 123
            L G      +  I H    D+  L +  G+    +F T++A+R T    TN   L   +
Sbjct: 83  VLNG------QHWIIHAAPSDLPSLGW-LGLFPGTLFDTELAARFTGFPRTN---LGAII 132

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
            EL  + + K     DWS   LS+E   YAA DV
Sbjct: 133 AELFDVQLGKGHGDDDWSIPQLSEEMRAYAALDV 166


>gi|282853987|ref|ZP_06263324.1| 3'-5' exonuclease [Propionibacterium acnes J139]
 gi|282583440|gb|EFB88820.1| 3'-5' exonuclease [Propionibacterium acnes J139]
 gi|314923384|gb|EFS87215.1| 3'-5' exonuclease [Propionibacterium acnes HL001PA1]
 gi|314981064|gb|EFT25158.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA3]
 gi|315091889|gb|EFT63865.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA4]
 gi|315093353|gb|EFT65329.1| 3'-5' exonuclease [Propionibacterium acnes HL060PA1]
 gi|327327556|gb|EGE69332.1| putative ribonuclease D [Propionibacterium acnes HL103PA1]
          Length = 412

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 17/165 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT----VDIIRI--AAGQKN-APNLVGMLVDEKR 75
           IA+DTE         R C++QL   DG+    VD + +  A G K  A  L G       
Sbjct: 38  IAIDTERAHGFRYSPRACLIQLR-RDGSSTHLVDPLALGGAVGLKPLAKALAGT------ 90

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           + I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + K  
Sbjct: 91  QWILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNL--PKVSLGPMVEHYCGVTLLKEH 147

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A
Sbjct: 148 SASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192


>gi|242034371|ref|XP_002464580.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
 gi|241918434|gb|EER91578.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
          Length = 882

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D  ++K+ H    DI  L   F + V  +F T  AS++ +   +++ L+  L    G+  
Sbjct: 315 DPTKKKVMHGAGRDIIWLQRDFSIYVCNLFDTGQASKVLQM--DRNSLEHLLHHFCGVTA 372

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEKLQRLGRSDLATSCC 184
           +K  Q++DW    L DE ++YA  D  +L      +RL+     +  G +DL    C
Sbjct: 373 NKEYQAADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVN--ESSGENDLLLEVC 427


>gi|332807618|ref|XP_001136533.2| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes]
          Length = 909

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482


>gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
 gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
          Length = 935

 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 25/190 (13%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV----GMLVDEKREKIFHY 81
           DTET  + P +  L  +  +   G    + + AG++NA  +V     +L +EK  KI   
Sbjct: 366 DTETTHVEPTQAELVGMSFAYKSGEAYYVPVPAGKENAQAVVEIFRPVLENEKILKIAQN 425

Query: 82  GRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKE------------LLG 128
            ++D A++F  +GV VR P F T +A  L      +HG+ D L E            L+G
Sbjct: 426 LKYD-AIVFKWYGVEVRGPYFDTMVAHYLLEPEM-RHGM-DYLAETYLSYSPISIEMLIG 482

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA-TSCCNFL 187
               K +   + S  DL ++   YAA D      L+  F  KL+  G  +L  T  C  +
Sbjct: 483 ---KKGKDQLNMSQIDL-EKVTDYAAEDADITLQLKELFAPKLEEGGVQELFDTIECPLI 538

Query: 188 MDRAELDLLG 197
              A+L+  G
Sbjct: 539 KVLADLEYEG 548


>gi|255074453|ref|XP_002500901.1| predicted protein [Micromonas sp. RCC299]
 gi|226516164|gb|ACO62159.1| predicted protein [Micromonas sp. RCC299]
          Length = 316

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 36/195 (18%)

Query: 2   TTIRVHEGDIPAECAARYVDAIA------VDTETLGLMPRRDRLCIVQLSPGDGTVDIIR 55
           T  RV   D P  CA    + IA      VD E + L  R   + + Q++P +G V ++ 
Sbjct: 72  TPPRVILLDDPGSCADAMRELIARGEPCAVDFEGVALS-RTGAISLAQVAPPNGPVYLVD 130

Query: 56  IA---AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           +A   A   +   L  +L      K+    R D   L + FGVR+R VF  ++A  L + 
Sbjct: 131 VACMGAAAFDEGRLGELLGATHPLKLVFDCRGDADALHHQFGVRMRGVFDVQVAFCLKKD 190

Query: 113 YTNQH-------GLKDNLKELLGIN---------ISKAQQS----------SDWSADDLS 146
             +         GL+  LKE  G++         +  A  S            W+   + 
Sbjct: 191 VDHGGKRGAYLMGLRKALKECPGLDDEARHELDAVKSAGASLFAPELGGSYDAWTKRPMH 250

Query: 147 DEQLQYAASDVVHLH 161
            + ++YAA+DV +LH
Sbjct: 251 PDLVKYAAADVTYLH 265


>gi|212715679|ref|ZP_03323807.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661046|gb|EEB21621.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
           16992]
          Length = 431

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G++ + +F T+IA+RL      + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 106 FNDLGLKPQRLFDTEIAARLL--GMKRFGLAAVTEHYLGLTLAKEHSAADWSYRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             YAA DV  L  L      +L+R G+ + A    ++ +
Sbjct: 164 RNYAALDVELLIELETIMRAELRRQGKIEWAEEEFDYAL 202


>gi|66816197|ref|XP_642108.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|60470232|gb|EAL68212.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 718

 Score = 40.8 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           ++ ++QLS  + T  +I+++  +K   +L  +L D +  K+      D A +F TF V  
Sbjct: 223 KVALIQLSSKNETF-LIQVSQMEKIPTSLEQILTDPRLIKVGVAVSQDAATIFQTFSVVT 281

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155
           +        +RLT    N  GL      ++ + + K+   + S W   DL+++Q+ YAA+
Sbjct: 282 KGCVDLVPIARLTNYEGN--GLASLALNVMNVTLDKSNLIRCSHWENKDLTNDQIHYAAA 339

Query: 156 D 156
           D
Sbjct: 340 D 340


>gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens]
          Length = 899

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 380 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNV 437

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
           + +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 438 DSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWER 482


>gi|325180763|emb|CCA15173.1| LETM1 and EFhand domaincontaining protein 1 putative [Albugo
           laibachii Nc14]
          Length = 1136

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 15/146 (10%)

Query: 20  VDAIAVDTETLGLMPRRDR------LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           V  + +DTE     PR D       + ++Q+S  D TV + RI   Q   P L  +L   
Sbjct: 149 VKIVGIDTEC---RPRFDSNKANNPVSLIQISTID-TVYLYRIKRQQPLPPLLGHLLASP 204

Query: 74  KREKIFHYGRFDIAVLFYTFGV-RVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINI 131
              K+ H  R D   L  +  V RV     T  IA RL     ++ GLK   +  L  N+
Sbjct: 205 HVIKVGHSLRDDCKSLRESKLVERVSSTLDTLPIAKRLG---CSRPGLKTLCQIFLDHNL 261

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDV 157
           SK  Q SDW + DLS +Q+QYAA+D 
Sbjct: 262 SKKMQLSDWESPDLSVKQIQYAATDA 287


>gi|218885986|ref|YP_002435307.1| 3'-5' exonuclease [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756940|gb|ACL07839.1| 3'-5' exonuclease [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 201

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV-----VHLHALRLQFTEK 170
           HGL++     L + ISK  Q S+WS  +L+ +Q+ YAA+D      +HL   RL   ++
Sbjct: 143 HGLRNLAANFLEVRISKGAQCSNWSNRELAPQQVLYAATDAWVSREIHLRMRRLGLIDR 201


>gi|332971116|gb|EGK10083.1| ribonuclease D [Psychrobacter sp. 1501(2011)]
          Length = 437

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 16/172 (9%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL----VGMLVDEKRE 76
           D +A+DTE +        L +VQ++ G+    I        +AP L      ++++E   
Sbjct: 70  DRVALDTEFIKRSTYFPILALVQINTGECIYLI--------DAPKLDLTEFWVVLEEMPL 121

Query: 77  KIFHYGRFDIAVLFY-TFGVRVRPVFCTKIA-SRLTRTYTNQHGLKDNLKELLGINISKA 134
            I+H    D+ + +  +    +  VF T+IA S LT     Q G +  L + L +++ K 
Sbjct: 122 MIWHACGEDLGIFYLLSESPALTNVFDTQIALSYLTGQL--QMGYQQALSQELDVHVDKG 179

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           +  SDW A  L+ EQ  YA  DV +L  L     ++L +    D     C  
Sbjct: 180 ESQSDWLARPLTHEQESYAIDDVRYLLNLYDILQQQLTKQSLLDKVIEDCQL 231


>gi|311064600|ref|YP_003971325.1| ribonuclease D [Bifidobacterium bifidum PRL2010]
 gi|310866919|gb|ADP36288.1| Ribonuclease D [Bifidobacterium bifidum PRL2010]
          Length = 428

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G+  + +F T+IA+R+   +  + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 106 FADIGLTPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTLAKEHSAADWSYRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             YAA DV  L  LR +   +L+  G+   A     + +
Sbjct: 164 RNYAALDVELLIELRRKMQRELKAQGKDGWADEEFRYAL 202


>gi|29349740|ref|NP_813243.1| hypothetical protein BT_4332 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569894|ref|ZP_04847303.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384013|ref|ZP_06993574.1| 3'-5' exonuclease domain protein [Bacteroides sp. 1_1_14]
 gi|29341650|gb|AAO79437.1| 3'-5' exonuclease-like protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840275|gb|EES68357.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263617|gb|EFI06480.1| 3'-5' exonuclease domain protein [Bacteroides sp. 1_1_14]
          Length = 216

 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           Y  Q G++D +L+++  I     ISK+Q+ S+W AD LSD Q QYAA+D
Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177


>gi|67593930|ref|XP_665760.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54656583|gb|EAL35530.1| hypothetical protein Chro.50386 [Cryptosporidium hominis]
          Length = 875

 Score = 40.8 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H   +DI  L   F V +  +F T  A+R+  T    + LK+ L     ++I K  Q
Sbjct: 357 KVLHGSDYDIIWLQRDFSVYIVNMFDTGQAARILNT-PGGYSLKNLLSIYCSLDIDKRFQ 415

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    LS+E ++YA  D  +L
Sbjct: 416 LADWRERPLSNELIEYARGDTHYL 439


>gi|66357594|ref|XP_625975.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
           domain and an HRDc domain [Cryptosporidium parvum Iowa
           II]
 gi|46227246|gb|EAK88196.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
           domain and an HRDc domain [Cryptosporidium parvum Iowa
           II]
          Length = 957

 Score = 40.8 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H   +DI  L   F V +  +F T  A+R+  T    + LK+ L     ++I K  Q
Sbjct: 357 KVLHGSDYDIIWLQRDFSVYIVNMFDTGQAARILNT-PGGYSLKNLLSIYCSLDIDKRFQ 415

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    LS+E ++YA  D  +L
Sbjct: 416 LADWRERPLSNELIEYARGDTHYL 439


>gi|111221533|ref|YP_712327.1| putative ribonuclease D [Frankia alni ACN14a]
 gi|111149065|emb|CAJ60747.1| Putative ribonuclease D (partial match) [Frankia alni ACN14a]
          Length = 545

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   +F T++A RL   Y  + GL   ++ +LG  + K  
Sbjct: 115 EWVLHAASQDLPCL-AELGLRPALLFDTELAGRLL-GY-ERVGLGMMVERVLGYGLEKGH 171

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALR 164
            ++DWS   L +  L+YAA DV  L  LR
Sbjct: 172 SAADWSTRPLPEPWLRYAALDVELLVELR 200


>gi|255693419|ref|ZP_05417094.1| 3'-5' exonuclease domain protein [Bacteroides finegoldii DSM 17565]
 gi|260620806|gb|EEX43677.1| 3'-5' exonuclease domain protein [Bacteroides finegoldii DSM 17565]
          Length = 214

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           Y  Q G++D +L+++  I     ISK+Q+ S+W AD LSD Q QYAA+D
Sbjct: 129 YVRQFGIQDKSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATD 177


>gi|295835905|ref|ZP_06822838.1| ribonuclease D [Streptomyces sp. SPB74]
 gi|295825772|gb|EFG64472.1| ribonuclease D [Streptomyces sp. SPB74]
          Length = 430

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           +F T++A RL      + GL   ++ +LG  + K   + DWS   L +  L+YAA DV  
Sbjct: 141 LFDTELAGRLA--GFPRVGLGAMVENVLGYTLEKGHSAVDWSTRPLPEPWLRYAALDVEL 198

Query: 160 LHALRLQFTEKLQRLGRSDLA 180
           L  LR    ++L R G+ + A
Sbjct: 199 LVDLRDALEKELDRQGKLEWA 219


>gi|327394110|dbj|BAK11532.1| ribonuclease D Rnd [Pantoea ananatis AJ13355]
          Length = 274

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           G    +     + + K++  +DW A  L++ Q QYAA+DV +L  +  Q  ++++++G  
Sbjct: 18  GFASMVAHFTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAHQLMQQVEQVGNM 77

Query: 178 DLATSCCNFLMDR 190
             A S C  L  R
Sbjct: 78  AAALSECENLCQR 90


>gi|291436577|ref|ZP_06575967.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
 gi|291339472|gb|EFE66428.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
          Length = 432

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L     +  R +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 116 EWVLHAATQDLPCLREIGMLPTR-LFDTELAGRLA--GFPRVGLGAMVENVLGYVLEKGH 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A
Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRNALEKELDRQGKLEWA 217


>gi|294815677|ref|ZP_06774320.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064]
 gi|326444024|ref|ZP_08218758.1| ribonuclease D [Streptomyces clavuligerus ATCC 27064]
 gi|294328276|gb|EFG09919.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064]
          Length = 428

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 116 EWILHAATQDLPCL-RDIGMAPALLFDTELAGRLA--GFPRVGLGAMVESVLGYALEKGH 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L+YAA DV  L  LR    E+L   G+ + A
Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLIDLRDALEEELAEQGKLEWA 217


>gi|258546025|ref|ZP_05706259.1| ribonuclease D [Cardiobacterium hominis ATCC 15826]
 gi|258518754|gb|EEV87613.1| ribonuclease D [Cardiobacterium hominis ATCC 15826]
          Length = 401

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 29/54 (53%)

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           ++  LGI   K+Q  SDW A  L+  QL YAA DV  L  L       LQRLGR
Sbjct: 165 VEHYLGIAPDKSQTRSDWLARPLNAAQLDYAADDVGLLARLYPLLVADLQRLGR 218


>gi|239928248|ref|ZP_04685201.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L     +  R +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 82  EWVLHAATQDLPCLREIGMLPTR-LFDTELAGRLA--GFPRVGLGAMVENVLGYVLEKGH 138

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A
Sbjct: 139 SAVDWSTRPLPEPWLRYAALDVELLVDLRNALEKELDRQGKLEWA 183


>gi|73950874|ref|XP_535408.2| PREDICTED: similar to exosome component 10 isoform 1 [Canis
           familiaris]
          Length = 1012

 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 482 LTDPTIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCSV 539

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL----HALRLQFTEK 170
             +K  Q +DW    L +E L YA  D  +L      +RL+  E+
Sbjct: 540 ESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWER 584


>gi|209881893|ref|XP_002142384.1| exosome component 10 [Cryptosporidium muris RN66]
 gi|209557990|gb|EEA08035.1| exosome component 10, putative [Cryptosporidium muris RN66]
          Length = 1029

 Score = 40.4 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 4/139 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVD-IIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           +A+D E   +   R  +C++Q+S    T D II      +    L  +  + +  K+FH 
Sbjct: 401 LAIDLEHHSMQTFRGFVCLIQMSTR--TCDYIIDPFPLFEELSRLNELTTNPRILKLFHG 458

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
             +DI  L   F V V  +F T  A+R+  T    + L + L     +  +K  Q SDW 
Sbjct: 459 SDYDIIWLQRDFSVYVVNMFDTGQAARVLNT-PGGYSLGNLLNLYCSVEANKQYQLSDWR 517

Query: 142 ADDLSDEQLQYAASDVVHL 160
              L    ++YA SD  +L
Sbjct: 518 ERPLPQHLIEYARSDTHYL 536


>gi|87307951|ref|ZP_01090094.1| ribonuclease D [Blastopirellula marina DSM 3645]
 gi|87289565|gb|EAQ81456.1| ribonuclease D [Blastopirellula marina DSM 3645]
          Length = 392

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 9/142 (6%)

Query: 39  LCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
           LC+VQ++ G+    VD  RI     +      ++       + H GR +    +   G  
Sbjct: 41  LCLVQIAAGEILAIVDPKRI----DDMNVFWELIAGGDHVSVVHSGREEFLFCYRATGKA 96

Query: 97  VRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155
              +F T+IA  L    Y    G  + +  LL   + K +  +DW    LS  Q++YA +
Sbjct: 97  PANLFDTQIAGGLIGMEYPASFG--NLILRLLDEKLPKGETRTDWRVRPLSSRQIEYALN 154

Query: 156 DVVHLHALRLQFTEKLQRLGRS 177
           DV +L     +  ++L +L R+
Sbjct: 155 DVAYLGPAAQELEKELTKLDRT 176


>gi|322815315|gb|EFZ23992.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
          Length = 713

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 25/172 (14%)

Query: 5   RVHEGDIP-AECAARYVDA----------------IAVDTETLGLMPRRDRLCIVQLS-- 45
           RV    +P A+C  R+VDA                IAVD E       +   C++Q+S  
Sbjct: 200 RVETPYLPLAQCPLRFVDATVDLEEVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTR 259

Query: 46  PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105
             D  +D +++ +       L  + ++    K+ H  R DI  L   FG+ +   F T I
Sbjct: 260 SEDILIDCLKLRSLMHL---LAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGI 316

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           A    +T    HGL   +     + + K  Q++DW    +  E + YA  D 
Sbjct: 317 A---LQTLHMPHGLAFAVDHFCQVKLDKKYQTADWRIRPIPAEMVTYARQDT 365


>gi|319901369|ref|YP_004161097.1| 3'-5' exonuclease [Bacteroides helcogenes P 36-108]
 gi|319416400|gb|ADV43511.1| 3'-5' exonuclease [Bacteroides helcogenes P 36-108]
          Length = 220

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           + Y    G++D +L+++ GI     ISK+Q+ S+W AD LS+ Q QYAA+D        L
Sbjct: 127 QEYVRAFGIQDKSLQKIYGILFGEKISKSQRLSNWEADMLSESQKQYAATDAWAC----L 182

Query: 166 QFTEKLQRLGRS 177
               +LQ L R+
Sbjct: 183 NIYNRLQELKRT 194


>gi|315608200|ref|ZP_07883192.1| 3'-5' exonuclease domain protein [Prevotella buccae ATCC 33574]
 gi|315250169|gb|EFU30166.1| 3'-5' exonuclease domain protein [Prevotella buccae ATCC 33574]
          Length = 215

 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 44/176 (25%)

Query: 21  DAIAVDTETLGLMPR-------------RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           D +  DTET  +  R             RD   + +L+    T DIIR+   + N    +
Sbjct: 46  DILGFDTETKPVFRRGQHSKVALLQVANRDACILFRLNYTGMTSDIIRLL--EDNTVKKI 103

Query: 68  GM-----LVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           G+     ++  +R K F  G F D+  +    G+  R          L + Y N      
Sbjct: 104 GLSWHDDILSLQRRKPFQVGSFIDLQDIVGDLGIEDRS---------LQKLYAN------ 148

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
               L    ISK Q+ ++W AD L D Q QYAA+D        ++  E+++RL R+
Sbjct: 149 ----LFQEKISKNQRLTNWEADVLKDSQKQYAATDAWTC----IKLYEEIERLKRT 196


>gi|308460613|ref|XP_003092609.1| hypothetical protein CRE_19499 [Caenorhabditis remanei]
 gi|308253010|gb|EFO96962.1| hypothetical protein CRE_19499 [Caenorhabditis remanei]
          Length = 275

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 31/46 (67%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            LK+ +KE +G++I K +  SDW+ + L+ +Q+ YAA D + +H +
Sbjct: 221 SLKEAVKESVGLDIDKRETMSDWTKEILTKDQIVYAAMDALAVHYI 266


>gi|242057747|ref|XP_002458019.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
 gi|241929994|gb|EES03139.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
          Length = 340

 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 73/189 (38%), Gaps = 30/189 (15%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R   LCI+QL+  D    +  I  G++        L  +   K+ H  
Sbjct: 54  IGFDCEGVDLC-RNGALCIMQLAFPDAVYLVDAIEGGKELIQACKPALESDHITKVIHDC 112

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL--------------KELLG 128
           + D   L++ FG+++  V  T+IA  L +    Q G K                 K   G
Sbjct: 113 KRDSEALYFQFGIKLHNVMDTQIAYSLIQE-QEQEGKKKTSDDYNYISFVSLLADKRFCG 171

Query: 129 INISKA--------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG----- 175
           I   +         Q  + W+   LSD  ++ A  DV  L  +  +  EKL ++      
Sbjct: 172 IPYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRFLLNIYEKMMEKLSKVSLWRLA 231

Query: 176 -RSDLATSC 183
            RS+L   C
Sbjct: 232 VRSELYCRC 240


>gi|308466384|ref|XP_003095446.1| hypothetical protein CRE_16334 [Caenorhabditis remanei]
 gi|308245291|gb|EFO89243.1| hypothetical protein CRE_16334 [Caenorhabditis remanei]
          Length = 275

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 31/46 (67%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            LK+ +KE +G++I K +  SDW+ + L+ +Q+ YAA D + +H +
Sbjct: 221 SLKEAVKESVGLDIDKRETMSDWTKEILTKDQIVYAAMDALAVHYI 266


>gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10, partial [Taeniopygia guttata]
          Length = 504

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 40  CIVQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           C++Q+S    T D I      ++  N++     D    K+ H    D+  L   FG+ + 
Sbjct: 331 CLMQIS--TRTEDFIIDTLALRSDMNILNETFTDPAIVKVLHGADSDVEWLQRDFGLYLV 388

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            VF T  A+RL      +H L   LK   G++  K  Q +DW    L +E ++YA  D  
Sbjct: 389 NVFDTHQAARLLNL--GRHSLDHLLKLYCGVDADKKYQLADWRIRPLPEEMIRYARDDTH 446

Query: 159 HL 160
           +L
Sbjct: 447 YL 448


>gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
 gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
          Length = 832

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 56/138 (40%), Gaps = 3/138 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E       +   C++Q+S  D    I+   A + +   L     D K  K+FH  
Sbjct: 295 FAVDLEHHSYRSFQGFTCLMQVSTRDHDY-IVDTLALRADLHVLNDTFTDPKVVKVFHGA 353

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FGV V  +F T  AS +      +H L   LK    +   K  Q +DW  
Sbjct: 354 DMDIQWLQRDFGVYVVNMFDTGQASHVLGL--PRHSLAYLLKTYCDVEPDKKYQLADWRI 411

Query: 143 DDLSDEQLQYAASDVVHL 160
             L  E  QYA  D  +L
Sbjct: 412 RPLPSEMTQYAREDTHYL 429


>gi|317484427|ref|ZP_07943341.1| 3'-5' exonuclease [Bilophila wadsworthia 3_1_6]
 gi|316924315|gb|EFV45487.1| 3'-5' exonuclease [Bilophila wadsworthia 3_1_6]
          Length = 198

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
            GL+    +L+G  ISKA Q S+W+   L+ +Q++YAA+D 
Sbjct: 144 QGLRTLAAQLMGCRISKAAQCSNWAKKTLTPQQIRYAATDA 184


>gi|88856896|ref|ZP_01131548.1| ribonuclease [marine actinobacterium PHSC20C1]
 gi|88813864|gb|EAR23734.1| ribonuclease [marine actinobacterium PHSC20C1]
          Length = 418

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++ +R+      + GL   ++  LGI+++K  
Sbjct: 97  EWILHAATQDLTCL-REVGLYPTRLFDTELGARIA--GLPRVGLGTVVEHFLGIHLAKEH 153

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            S+DWS   L    L YAA DV  L  LR    E L    + D+A    + ++ R
Sbjct: 154 SSADWSTRPLPQAWLVYAALDVELLVDLREALGELLDSADKHDIAQQEFDSVLAR 208


>gi|170048985|ref|XP_001853674.1| 3'-5' exonuclease [Culex quinquefasciatus]
 gi|167870951|gb|EDS34334.1| 3'-5' exonuclease [Culex quinquefasciatus]
          Length = 755

 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 5/156 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +  D E +    +R  + ++QL+   G   +IR+   ++  P L  +L D    K+    
Sbjct: 73  LGFDCEWVTEKGKRHPVALLQLASHQGLCALIRLCQMKRIPPELGELLNDPGILKVGIGA 132

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDW 140
             D  +L   + ++V      +  +   R     +G+    ++ LG+ + K  +  +SDW
Sbjct: 133 IEDAQLLRSDYNLKVESALDLRHLAERCRV-PGPYGMARLAEKSLGLQLDKHWRVRASDW 191

Query: 141 SADDLSDEQLQYAASDV-VHLHALRLQFTEKLQRLG 175
            A +LS+ QL+YAA+D  V +   RL + +++ R G
Sbjct: 192 EALELSERQLKYAANDAHVAVELFRL-YADRVLRCG 226


>gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 743

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 17/188 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E       +   C++Q+S    D  VD +++   + +   L  + ++    K+FH
Sbjct: 255 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL---RSSMGALAPVFLNPSILKVFH 311

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI  L   F + V   F T +A    +T    + L   +     + ++K  Q++DW
Sbjct: 312 GAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPYSLAFAVDHFCQVKLNKKYQTADW 368

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-----GRSDLATSCCNFLMDRAELDL 195
               LS E + YA  D   L    L   ++L+ L     GR+ + +   +   +  +L L
Sbjct: 369 RVRPLSAEMVHYARQDTHFL----LYVHDRLKALLLNSEGRASIGSLLVHVYNESKQLSL 424

Query: 196 LGWENVDI 203
             +E  ++
Sbjct: 425 QIYEKPNV 432


>gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus]
          Length = 860

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +  +K  Q
Sbjct: 363 KVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNVESNKQYQ 420

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L +E L YA  D  +L
Sbjct: 421 LADWRIRPLPEEMLSYARDDTHYL 444


>gi|288917119|ref|ZP_06411489.1| 3'-5' exonuclease [Frankia sp. EUN1f]
 gi|288351488|gb|EFC85695.1| 3'-5' exonuclease [Frankia sp. EUN1f]
          Length = 525

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 131 EWVLHAASQDLPCL-AELGLHPTSLFDTELAGRLL--GYERVGLGAMVERVLGFALEKGH 187

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++DWS   L +  L+YAA DV  L  LR +   +L    + D A
Sbjct: 188 SAADWSTRPLPEPWLRYAALDVELLVELRDRLEAELVERDKIDFA 232


>gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
           (ISS) [Ostreococcus tauri]
 gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
           (ISS) [Ostreococcus tauri]
          Length = 701

 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 6/162 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
            AVD E       +   C++Q+S    D  VD++ + +  ++A  L     D    K+ H
Sbjct: 141 FAVDLEHHSYRSFKGFTCLMQVSTREKDFVVDVLALRSLVRDA--LGKAFADPNTLKVMH 198

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L   FG+ V  +F T  A+R+    +    L   L+   GI  +K  Q +DW
Sbjct: 199 GADNDVQWLQKDFGIFVSCLFDTGQAARVLELPSK--ALAYLLQHYCGIKANKKFQLADW 256

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
               L+ E L YA  D  +L  +  +  + L   G + +A +
Sbjct: 257 RVRPLTREMLDYARGDTHYLLYVYDELKKALAARGENSIAAT 298


>gi|297597041|ref|NP_001043365.2| Os01g0566900 [Oryza sativa Japonica Group]
 gi|52076246|dbj|BAD45014.1| egalitarian-like [Oryza sativa Japonica Group]
 gi|125526475|gb|EAY74589.1| hypothetical protein OsI_02478 [Oryza sativa Indica Group]
 gi|215712371|dbj|BAG94498.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673376|dbj|BAF05279.2| Os01g0566900 [Oryza sativa Japonica Group]
          Length = 307

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 30/187 (16%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R   LCI+Q++  D    +  I  G++        L  E   K+ H  
Sbjct: 25  IGFDCEGVDLC-RHGALCIMQIAFPDAVYLVDAIEGGKELIEACKPALESEYVTKVIHDC 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL------------GIN 130
           + D   L++ FG+++  V  T+IA  L      Q G K    E +            G+ 
Sbjct: 84  KRDSEALYFQFGIKLHNVMDTQIAYSLLE---EQEGKKRGYDEYISFVSLLADPRYCGMA 140

Query: 131 ISKA--------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG------R 176
             +         Q  + W+   LS+  ++ A  DV  L ++  +  EKL ++       R
Sbjct: 141 YPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSIHEKMMEKLSKVSLWRLSVR 200

Query: 177 SDLATSC 183
           S+L   C
Sbjct: 201 SELYCRC 207


>gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus]
          Length = 885

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +  +K  Q
Sbjct: 363 KVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCNVESNKQYQ 420

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L +E L YA  D  +L
Sbjct: 421 LADWRIRPLPEEMLSYARDDTHYL 444


>gi|41582248|gb|AAR37708.2| ribonuclease D, putative [uncultured marine bacterium 441]
          Length = 177

 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 7/140 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+DTE   +      LC++Q++  D    +D++ +     N   L   L  +K + I H
Sbjct: 34  LAIDTEFRRVDSYLPELCLIQIATKDKLECIDVLSL----DNLDPLFVKLYGKKTKWIAH 89

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI  L+         +F T+IA+     Y  Q   ++  + L  + + K     DW
Sbjct: 90  SARQDIEALYSLSNQIPSAIFDTQIAASFL-NYPLQISYQNLTESLENVRLEKKFTRFDW 148

Query: 141 SADDLSDEQLQYAASDVVHL 160
               L  + LQYA  DV +L
Sbjct: 149 KKRPLPADVLQYAIDDVKYL 168


>gi|225429426|ref|XP_002276186.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147856945|emb|CAN82846.1| hypothetical protein VITISV_007988 [Vitis vinifera]
 gi|296081603|emb|CBI20608.3| unnamed protein product [Vitis vinifera]
          Length = 341

 Score = 40.0 bits (92), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 25/196 (12%)

Query: 1   MTTIRVHEGDIPAECAARYVDA-------IAVDTETLGLMPRRDRLCIVQLSPGDGTVDI 53
           +  + +H   +P++    +++        I  D E + L  R   LCI+Q++  D    +
Sbjct: 29  LPLVPIHIVTLPSQLPIEFLEPSPERKLVIGFDCEGVDLC-RHGTLCIMQIAFPDAIYLV 87

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
             I  G+         L      K+ H  + D   L++ FG+++  V  T+IA  L    
Sbjct: 88  DAIQGGEMLMKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ 147

Query: 114 TNQHGLKDNLKELL---------GINISKAQQSSD--------WSADDLSDEQLQYAASD 156
             +  L D+    +         G++  + Q+  D        W+   LSD  ++ AA D
Sbjct: 148 EGRKRLVDDYISFVGLLADPRYCGVSYLEKQEVRDLLRQNPDFWTHRPLSDLMVRAAADD 207

Query: 157 VVHLHALRLQFTEKLQ 172
           V  L  +  +  EKL 
Sbjct: 208 VRFLLYIYHKMMEKLN 223


>gi|289739467|gb|ADD18481.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 349

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 13/158 (8%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           + T+R H GD            +  D E + +   R  + ++QL+  +G   + R+    
Sbjct: 39  VNTLRQHCGD---------YKVLGFDCEWITIGRVRKPVALLQLASPNGFCGLFRLCHMD 89

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
               +L  +L D++  K+      D   L   +G+ V   F  +  + + R      GL+
Sbjct: 90  HIPESLKNLLADKEIIKVGVNPAEDARKLQGDYGIYVASTFDIRYLAAMIRC--KPLGLE 147

Query: 121 DNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASD 156
              + LL ++  K      S+W  D L D+Q++YAA+D
Sbjct: 148 KLSRSLLNVDFVKPWYIARSNWEFDKLDDDQVEYAAND 185


>gi|261880482|ref|ZP_06006909.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332821|gb|EFA43607.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 253

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 29/178 (16%)

Query: 13  AECAARYV---DAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           AE A  Y+   D + VDTET     R  + ++C++Q+S  D T  + R+       P + 
Sbjct: 35  AEKAVDYLLSSDILGVDTETRPSFHRGEQHQVCLLQVSNRD-TCFLFRLHL-TGITPAIK 92

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD-NLKEL 126
            +L D   +KI      DI       G++ R  F   +   L +    + G+KD +L++L
Sbjct: 93  RLLEDTTVKKIGLSWHDDIR------GLQARENFTPGLFVDL-QDIVPELGVKDLSLQKL 145

Query: 127 ----LGINISKAQQSSDWSADDLSDEQLQYAASDV---VHLHALRLQFTEKLQRLGRS 177
                G  ISK Q+ S+W A  LSD+Q QYAA D    +HL+       E++ RL R+
Sbjct: 146 YANFFGKKISKRQRLSNWEAAVLSDKQKQYAAIDAWSCIHLY-------EEITRLKRT 196


>gi|117620631|ref|YP_856729.1| ribonuclease D [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562038|gb|ABK38986.1| ribonuclease D [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 379

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+ ++ +  G     +  T++A+     Y    G    + E L + + K Q  
Sbjct: 85  ILHASGEDLELIQHQAGHLPNQMHDTQLAAAFL-GYGVSVGFGALVNEFLAVELEKDQAR 143

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +DW A  L+  QL+YAA+DV +L  L  +   KL   G+       C 
Sbjct: 144 TDWLARPLTPRQLEYAAADVFYLLPLYEKVMAKLHESGKFAWFEQECQ 191


>gi|242277603|ref|YP_002989732.1| 3'-5' exonuclease [Desulfovibrio salexigens DSM 2638]
 gi|242120497|gb|ACS78193.1| 3'-5' exonuclease [Desulfovibrio salexigens DSM 2638]
          Length = 198

 Score = 40.0 bits (92), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 109 LTRTYTNQ-HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           L R+   Q +GL++    LLG  ISK  Q S+W   +L+ +Q+ YAA+D      + L+F
Sbjct: 133 LARSLEMQTNGLRNLAANLLGFRISKGVQCSNWGRKELTPQQITYAATDAWVSREIYLKF 192

Query: 168 TE 169
            +
Sbjct: 193 QD 194


>gi|255566405|ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 977

 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 9/141 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIF 79
            AVDTE   L        +VQ+S    D  +D I +     +A  ++G +  + K  K+F
Sbjct: 145 FAVDTEQHSLRSFLGFTALVQISTQKEDYLLDTIAL----HDAMGILGAVFANPKICKVF 200

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H G  DI  L   F + V  +F T  A  +      Q  L   L+   G++ +K  Q  D
Sbjct: 201 HGGDNDILWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGVSTNKLLQRED 258

Query: 140 WSADDLSDEQLQYAASDVVHL 160
           W    L  E LQYA +D  +L
Sbjct: 259 WRQRPLPAEMLQYALTDAHYL 279


>gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 743

 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 17/188 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E       +   C++Q+S    D  VD +++   + +   L  + ++    K+ H
Sbjct: 255 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL---RSSMGALAPVFLNPSILKVLH 311

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI  L   F + V   F T +A    +T    H L   +     + ++K  Q++DW
Sbjct: 312 GAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPHSLAFAVDHFCQVKLNKKYQTADW 368

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-----GRSDLATSCCNFLMDRAELDL 195
               LS E + YA  D   L    L   ++L+ L     GR+ + +   +   +  +L L
Sbjct: 369 RVRPLSAEMVHYARQDTHFL----LYVYDRLKALLLNSEGRASIGSLLVHVYNESKQLSL 424

Query: 196 LGWENVDI 203
             +E   +
Sbjct: 425 QIYEKPSV 432


>gi|82621130|gb|ABB86253.1| 3'-5' exonuclease domain-containing protein-like [Solanum
           tuberosum]
          Length = 338

 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 77/205 (37%), Gaps = 25/205 (12%)

Query: 1   MTTIRVHEGDIPAECAARYVDA-------IAVDTETLGLMPRRDRLCIVQLSPGDGTVDI 53
            +T+ +H    P+E    +++        I  D E + L  R   LCI+QL+  D    +
Sbjct: 27  FSTVPIHVVTNPSELPVEFLEPSAETQLVIGFDCEGVDLC-RHGTLCIMQLAFPDAIYLV 85

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
             +  G+         L      K+ H  + D   L++ FG+++  V  T+IA  L    
Sbjct: 86  DAVQGGEAVVQACKPALESNYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLINEQ 145

Query: 114 TNQHGLKDNLKELLG-----------------INISKAQQSSDWSADDLSDEQLQYAASD 156
                + D     +G                 + +   Q    W+   LS++ ++ AA D
Sbjct: 146 EGHARVPDCHISFVGLLADPRYCGVSYDEKEEVRVLLRQDPKYWTYRPLSEQMIRAAADD 205

Query: 157 VVHLHALRLQFTEKLQRLGRSDLAT 181
           V  L  +  +  +KL      +LA 
Sbjct: 206 VRFLLHIYHKMVQKLNDKSLWNLAV 230


>gi|226491678|ref|NP_001141141.1| hypothetical protein LOC100273227 [Zea mays]
 gi|194702850|gb|ACF85509.1| unknown [Zea mays]
          Length = 339

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 30/189 (15%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R   LCI+QL+  D    +  I  G++        L  +   K+ H  
Sbjct: 53  IGFDCEGVDLC-RNGALCIMQLAFPDAVYLVDAIEGGKELIQACKPALESDHITKVIHDC 111

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK---DNL-----------KELLG 128
           + D   L++ FG+++  V  T+IA  L      Q G K   D+            K   G
Sbjct: 112 KRDSEALYFQFGIKLHNVMDTQIAYSLIEE-QEQEGKKMTSDDYNYISFVSLLADKRYCG 170

Query: 129 INISKA--------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG----- 175
           I   +         Q  + W+   LSD  ++ A  DV  L ++  +  EKL ++      
Sbjct: 171 ILYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRFLLSIYAKMMEKLSKVSLWRLA 230

Query: 176 -RSDLATSC 183
            RS+L   C
Sbjct: 231 VRSELYCRC 239


>gi|311258442|ref|XP_003127631.1| PREDICTED: exosome component 10-like [Sus scrofa]
          Length = 759

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    +
Sbjct: 356 LTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCSV 413

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
             +K  Q +DW    L +E L YA  D  +L
Sbjct: 414 ESNKQYQLADWRIRPLPEEMLSYARDDTHYL 444


>gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue [Leishmania infantum]
          Length = 743

 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 17/188 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E       +   C++Q+S    D  VD +++   + +   L  + ++    K+ H
Sbjct: 255 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL---RSSMGALAPVFLNPSILKVLH 311

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI  L   F + V   F T +A    +T    H L   +     + ++K  Q++DW
Sbjct: 312 GAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPHSLAFAVDHFCQVKLNKKYQTADW 368

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-----GRSDLATSCCNFLMDRAELDL 195
               LS E + YA  D   L    L   ++L+ L     GR+ + +   +   +  +L L
Sbjct: 369 RVRPLSAEMVHYARQDTHFL----LYVYDRLKALLLNSEGRASIGSLLVHVYNESKQLSL 424

Query: 196 LGWENVDI 203
             +E   +
Sbjct: 425 QIYEKPSV 432


>gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus]
          Length = 886

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FG+ V  +F T  A+RL      +H L   LK    ++  K  Q
Sbjct: 360 KVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSLDHLLKLYCSVDSDKQYQ 417

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L +E L YA  D  +L
Sbjct: 418 LADWRIRPLPEEMLSYARDDTHYL 441


>gi|283783345|ref|YP_003374099.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05]
 gi|283441638|gb|ADB14104.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05]
          Length = 476

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F+  G+R   +F T+IA++L      + GL    +  LG+ ++K   ++DWS   L  + 
Sbjct: 106 FFNIGLRPLALFDTEIAAKLLGR--KRFGLSSVTEYYLGLTLAKEHSAADWSYRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             YAA DV  L  L      +L++ G+   A      L+ + 
Sbjct: 164 RNYAALDVELLIELEEVMRVELKKQGKLSWAEEEFKHLLSKG 205


>gi|213510932|ref|NP_001133834.1| Exosome component 10 [Salmo salar]
 gi|209155512|gb|ACI33988.1| Exosome component 10 [Salmo salar]
          Length = 885

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ +  +F T  ASR       +H L   LK    ++  K  Q
Sbjct: 362 KVFHGADSDIEWLQKDLGLYIVNMFDTHQASRTLNL--GRHSLDHLLKLFCNVDSDKRYQ 419

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L DE  QYA +D  +L
Sbjct: 420 LADWRIRPLPDEMFQYARADTHYL 443


>gi|291456557|ref|ZP_06595947.1| ribonuclease D [Bifidobacterium breve DSM 20213]
 gi|291381834|gb|EFE89352.1| ribonuclease D [Bifidobacterium breve DSM 20213]
          Length = 433

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+   F   G++ + +F T+IA+RL   +  + GL    +  LGI ++K   +
Sbjct: 99  ILHDSLMDLPG-FADLGLQPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAKEHSA 155

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +DWS   L  +   YAA DV  L  L       L+  G+ + A
Sbjct: 156 ADWSYRPLPRDWRNYAALDVEVLIELENLMRRDLRAAGKDEWA 198


>gi|255550866|ref|XP_002516481.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223544301|gb|EEF45822.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 342

 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 18/168 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R   LCI+Q++  D    +     G+         L      K+ H  
Sbjct: 59  IGFDCEGVDLC-RHGTLCIMQIAFPDAIFLVDATQGGEMLLKACKPALESSYITKVIHDC 117

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128
           + D   L++ FG+++  VF T+IA  L      +  L D+    +G              
Sbjct: 118 KRDSEALYFQFGIKLHNVFDTQIAYSLIEEQEGRTKLPDDYISFVGLLADPRYCGISYLE 177

Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              + +   Q S+ W+   LS+  ++ AA DV  L  +  +  +KL +
Sbjct: 178 KEEVRLLLRQDSNFWTYRPLSELMIRAAADDVRFLLYIYHKMIKKLNQ 225


>gi|333029171|ref|ZP_08457232.1| 3'-5' exonuclease [Bacteroides coprosuis DSM 18011]
 gi|332739768|gb|EGJ70250.1| 3'-5' exonuclease [Bacteroides coprosuis DSM 18011]
          Length = 211

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 8/71 (11%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           + Y    G+KD +L+++  I     ISKAQ+ S+W A +L+D Q +YAA+D      LR+
Sbjct: 127 QEYVKHFGIKDKSLQKIYAILFKEKISKAQRLSNWEAVELTDAQQRYAATDA--WSCLRI 184

Query: 166 -QFTEKLQRLG 175
             F E+L++ G
Sbjct: 185 YNFLEELKQSG 195


>gi|226533369|ref|NP_001143931.1| hypothetical protein LOC100276743 [Zea mays]
 gi|194696098|gb|ACF82133.1| unknown [Zea mays]
 gi|195629726|gb|ACG36504.1| hypothetical protein [Zea mays]
          Length = 344

 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 73/189 (38%), Gaps = 30/189 (15%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R   LCI+QL+  D    +  I  G++        L  +   K+ H  
Sbjct: 58  IGFDCEGVDLC-RNGALCIMQLAFPDAVYLVDAIEGGKELIQACKPALESDHITKVIHDC 116

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL--------------KELLG 128
           + D   L++ FG+++  V  T+IA  L +    Q G K                 K   G
Sbjct: 117 KRDSEALYFQFGIKLHNVMDTQIAYSLIQE-QEQKGKKKTSDDYNYISFVSLLADKRYCG 175

Query: 129 INISKA--------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG----- 175
           I   +         Q  + W+   LSD  ++ A  DV  L  +  +  EKL ++      
Sbjct: 176 IPYPEKEEVRILLRQDPNFWTIRPLSDMMVRAATDDVRFLLNIYEKMMEKLNKVSLWRLA 235

Query: 176 -RSDLATSC 183
            RS+L   C
Sbjct: 236 VRSELYCRC 244


>gi|310287702|ref|YP_003938960.1| Ribonuclease D [Bifidobacterium bifidum S17]
 gi|309251638|gb|ADO53386.1| Ribonuclease D [Bifidobacterium bifidum S17]
          Length = 428

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           F   G+  + +F T+IA+R+   +  + GL    +  LG+  +K   ++DWS   L  + 
Sbjct: 106 FADIGLAPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTFAKEHSAADWSYRPLPRDW 163

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             YAA DV  L  LR +   +L+  G+   A     + +
Sbjct: 164 RNYAALDVELLIELRRKMQRELKVQGKDGWADEEFRYAL 202


>gi|222618694|gb|EEE54826.1| hypothetical protein OsJ_02264 [Oryza sativa Japonica Group]
          Length = 504

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 30/187 (16%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R   LCI+Q++  D    +  I  G++        L  E   K+ H  
Sbjct: 222 IGFDCEGVDLC-RHGALCIMQIAFPDAVYLVDAIEGGKELIEACKPALESEYVTKVIHDC 280

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL------------GIN 130
           + D   L++ FG+++  V  T+IA  L      Q G K    E +            G+ 
Sbjct: 281 KRDSEALYFQFGIKLHNVMDTQIAYSLLE---EQEGKKRGYDEYISFVSLLADPRYCGMA 337

Query: 131 ISKA--------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG------R 176
             +         Q  + W+   LS+  ++ A  DV  L ++  +  EKL ++       R
Sbjct: 338 YPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSIHEKMMEKLSKVSLWRLSVR 397

Query: 177 SDLATSC 183
           S+L   C
Sbjct: 398 SELYCRC 404


>gi|63054485|ref|NP_593004.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe 972h-]
 gi|6226742|sp|Q10146|RRP6_SCHPO RecName: Full=Exosome complex exonuclease rrp6; AltName:
           Full=Ribosomal RNA-processing protein 6
 gi|159883898|emb|CAA93168.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe]
          Length = 777

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 19/146 (13%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNA------PNLVGMLVDEK 74
           IAVD E       R  +C++Q+S    D  VD + +    +        PN++       
Sbjct: 240 IAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEALNVVFTNPNII------- 292

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+FH    DI  L   FG+ V  +F T  A+++       HGL   L++    +  K 
Sbjct: 293 --KVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGF--EGHGLAFLLQKYCDYDADKR 348

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHL 160
            Q +DW    L  E L+YA SD  +L
Sbjct: 349 YQMADWRIRPLPREMLKYAQSDTHYL 374


>gi|15223514|ref|NP_176027.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
 gi|12321757|gb|AAG50917.1|AC069159_18 3'-5' exonuclease, putative [Arabidopsis thaliana]
          Length = 582

 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD-VVHLHALR 164
           GL    K++LG++++K +++SDW    LS  QL+YAA D  V +H  R
Sbjct: 497 GLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHIFR 544


>gi|332195255|gb|AEE33376.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
          Length = 589

 Score = 39.7 bits (91), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD-VVHLHALR 164
           GL    K++LG++++K +++SDW    LS  QL+YAA D  V +H  R
Sbjct: 483 GLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHIFR 530


>gi|115653109|ref|XP_001198503.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus
           purpuratus]
 gi|115960717|ref|XP_001189337.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus
           purpuratus]
          Length = 819

 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 9/186 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E           C++Q+S    D  VD + + +  +    L     D K  K+FH
Sbjct: 286 IAVDLEHHSYRSYLGFTCLMQISTAEHDYVVDTLELRSELQM---LNDAFTDPKIVKVFH 342

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L    G+ V  +F T  ASR        H L   L     +   K  Q +DW
Sbjct: 343 GANMDIDWLQRDLGLYVVNMFDTHQASR--SLGFPHHSLASLLSRYCQVEADKQYQLADW 400

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200
               L +E L YA  D  +L  L +  T K + + R +   +    ++D++    +   N
Sbjct: 401 RIRPLPEEMLHYAREDTHYL--LYIYHTMKNELIKRGNDRRNLLRAVLDQSTRICVQRYN 458

Query: 201 VDIFSH 206
             IF++
Sbjct: 459 KPIFTN 464


>gi|94987515|ref|YP_595448.1| ribonuclease D [Lawsonia intracellularis PHE/MN1-00]
 gi|94731764|emb|CAJ55127.1| Ribonuclease D [Lawsonia intracellularis PHE/MN1-00]
          Length = 198

 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           IA    R      GL+     +LG  +SKA Q S+W   +LS +Q+ YAA+D
Sbjct: 131 IAEMARRLQLKAQGLRTLAANILGCRVSKAVQCSNWEKKELSPQQVLYAATD 182


>gi|330955743|gb|EGH56003.1| ribonuclease D [Pseudomonas syringae Cit 7]
          Length = 178

 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           +E+L I++ K +  SDW    LS+ Q+ YAA D VHL  L
Sbjct: 1   QEVLDIDLPKGETRSDWLERPLSETQISYAAEDAVHLAEL 40


>gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500]
          Length = 1011

 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 16/174 (9%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQK--NAPNLVGMLVDEKR 75
           V+  AVD E       +  +C++Q+S    D  VD + + +  K  N P       + K 
Sbjct: 293 VEEFAVDLEAHNYRSFQGFVCLMQVSTRTEDFIVDTLVLRSHMKMLNVP-----FTNPKI 347

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    D+  L   FG+ +  +F T  ASR+    +    L   L+   G++ +K  
Sbjct: 348 VKVLHGSESDVKWLQRDFGIYIVNMFDTGQASRILEYPS--ASLAFLLRFYCGVDANKKF 405

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           Q +DW    + +E ++YA  D  +L  +  +   +L   G+     S  N+LM+
Sbjct: 406 QLADWRIRPVPEEMIKYAREDTHYLLYIYDRLRNELVLKGK-----STNNYLME 454


>gi|325282020|ref|YP_004254562.1| 3'-5' exonuclease [Odoribacter splanchnicus DSM 20712]
 gi|324313829|gb|ADY34382.1| 3'-5' exonuclease [Odoribacter splanchnicus DSM 20712]
          Length = 203

 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKDN-----LKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           Y    G++D      +  + G+ ISK Q++S+W A  L++ Q++YAA+D
Sbjct: 131 YAGYFGIEDKSFSKLMAIIFGVKISKRQRTSNWEAPALTEAQIRYAATD 179


>gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 704

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLK 124
           L + + E + H   F+   +   +   +R +  TK+ S+     L      QHG   +L+
Sbjct: 110 LANPQVEVVGHSLDFEQRWMLAKYNFPIRNLRDTKLMSQVYWAGLDPWLLKQHGKPHSLE 169

Query: 125 EL---LGINISKAQQSSDWSADD-----LSDEQLQYAASDV 157
            +   LGI+I K++Q+SDW   D     LS+ Q  YAA+D 
Sbjct: 170 SVCLRLGISIDKSRQTSDWGWGDLGNGQLSNNQFNYAANDA 210


>gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona
           intestinalis]
          Length = 647

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 58/140 (41%), Gaps = 7/140 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E       +   C++QLS    D  VD I + A + N  N V    +    K+FH
Sbjct: 86  IAVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTIALRA-ELNILNQV--FANPNIIKVFH 142

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L   FG+ V  +F T  A+R       +H L   L     +   K  Q +DW
Sbjct: 143 GADSDIIWLQRDFGIYVVNLFDTGQAARALGL--QRHSLDYLLTHYCNVQADKKYQLADW 200

Query: 141 SADDLSDEQLQYAASDVVHL 160
               L  E L YA  D  +L
Sbjct: 201 RIRPLPKEMLLYAQGDTHYL 220


>gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
 gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
          Length = 535

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 3/143 (2%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           + V   AVD E       +  +C++Q+S  D    I+   A +     L  +  D K  K
Sbjct: 256 KSVTEFAVDLEHHSYRSYQGFVCLMQISTRDADY-IVDTLALRSELWTLNEVFSDPKIIK 314

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    DI  L   F + V  +F T  A+RL +    +  L   L +   +  +K  Q 
Sbjct: 315 ILHGADSDIIWLQRDFAIYVVNMFDTGQAARLLQF--PRFSLSYLLLKYCNVTANKGLQL 372

Query: 138 SDWSADDLSDEQLQYAASDVVHL 160
           +DW    L  E +QYA  D  +L
Sbjct: 373 ADWRIRPLPQEMVQYAREDTHYL 395


>gi|50552133|ref|XP_503541.1| YALI0E04444p [Yarrowia lipolytica]
 gi|49649410|emb|CAG79122.1| YALI0E04444p [Yarrowia lipolytica]
          Length = 738

 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + IA+D E   +       C+VQ+S    D  +D I +    +N      +L D K  K+
Sbjct: 241 EEIAIDVEHHSMRTYYGITCLVQVSSREQDYIIDTIAL----RNLEIFNEVLTDPKIVKV 296

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    DI  L   FG+ +  +F T  A++        H L   L+       SK  Q S
Sbjct: 297 LHGATMDIQWLQRDFGLYIVSLFDTFHAAQALGL--KGHSLAFLLQHYANFVTSKKYQLS 354

Query: 139 DWSADDLSDEQLQYAASDV 157
           DW    +S EQL YA +D 
Sbjct: 355 DWRIRPMSPEQLLYARADT 373


>gi|224142834|ref|XP_002324746.1| predicted protein [Populus trichocarpa]
 gi|222866180|gb|EEF03311.1| predicted protein [Populus trichocarpa]
          Length = 331

 Score = 39.3 bits (90), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 23/193 (11%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGL------MPRRDRLCIVQLSPGDGTVDIIRIA 57
           + +H    P++  A +++  A     +G       + R   LCI+QL+  D    +  I 
Sbjct: 22  VPIHVVTEPSQLPAEFLNPSAAKQLIIGFDCEGVDLCRHGTLCIMQLAFPDAIYLVDAIK 81

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
            G+         L      K+ H  + D   L++ FG+++  V  T+IA         + 
Sbjct: 82  GGESLIRACKPALESSHITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSQIEEQEGRT 141

Query: 118 GLKDNLKELLG-----------------INISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            L D+    +G                 + +   Q    W+   LS+  +  AA DV  L
Sbjct: 142 RLPDDYISFVGLLADPRYCGISYLEKEEVRVLLRQDPMFWTYRPLSEMMIHAAADDVRFL 201

Query: 161 HALRLQFTEKLQR 173
             +  +  EKL +
Sbjct: 202 LRIYYKMMEKLNQ 214


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score = 39.3 bits (90), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           K+   L R     + L       LG ++ K+ Q SDW    L+ EQLQYAA+D   +  L
Sbjct: 188 KLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDW-GKPLTQEQLQYAANDAAVVLPL 246

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           R  F  K+     +D        L   A++ L+G
Sbjct: 247 RDTFRSKIIENQLADAIQVELGALARVAQMGLMG 280


>gi|40063706|gb|AAR38487.1| ribonuclease D, putative [uncultured marine bacterium 583]
          Length = 341

 Score = 39.3 bits (90), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 11/142 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A+DTE   +     +LC+VQ++       +D++ I     +   L   L   K E I H
Sbjct: 21  LAIDTEFKRINTYYPQLCLVQIATTHSLECIDVLSI----NDLEPLFEKLYRSKTEWIVH 76

Query: 81  YGRFDIAVLFYTFGVRVRPV--FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
             R DI   FY    R+ PV  F T+IA+ L   Y  Q   +   + L  I + K+    
Sbjct: 77  SARQDIEA-FYHLSKRI-PVSLFDTQIAASLL-NYPLQISYQLITEVLQDIQLDKSFTRF 133

Query: 139 DWSADDLSDEQLQYAASDVVHL 160
           DW+   L  + ++YA  DV +L
Sbjct: 134 DWTTRPLPADVVEYALDDVRYL 155


>gi|145544186|ref|XP_001457778.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425596|emb|CAK90381.1| unnamed protein product [Paramecium tetraurelia]
          Length = 389

 Score = 39.3 bits (90), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 30/167 (17%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +A  +D E         R+C++Q+S G        IA    N    +         KIF+
Sbjct: 15  EAFGIDIEF-----SNKRICLIQISDGKEIYLFDPIAL---NLEQYMRDFFQNDAIKIFY 66

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASR---------LTRTYTNQHGLKDNLKELLGINI 131
            G  D+  L   + + V      K+ ++         L + Y      +D+ K L     
Sbjct: 67  SGAQDLKWLKTEYQIEVNNYCDLKVLAQKEPDQSLIALWKKYCGVQFERDDKKRL----- 121

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALR----LQFTEKLQRL 174
               Q SDW A  LS EQL YAA D  HL  LR     Q+TE+ ++ 
Sbjct: 122 ----QRSDWFARPLSQEQLFYAALDCKHLIMLRDILLQQYTEEEKKF 164


>gi|260906565|ref|ZP_05914887.1| putative ribonuclease D [Brevibacterium linens BL2]
          Length = 384

 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 94  GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
           G++   +F T++A+R+      + GL    +  LG+ ++K   ++DWS   L  E L YA
Sbjct: 99  GMQPEVLFDTELAARML--GWEKFGLAAVAERTLGVRLAKEHSAADWSKRPLPKEWLNYA 156

Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           A DV  L  +R    E L    + + A      L+D
Sbjct: 157 ALDVEVLLPIRDILHEALIEADKWEFARQEFEHLLD 192


>gi|56460926|ref|YP_156207.1| ribonuclease D [Idiomarina loihiensis L2TR]
 gi|56179936|gb|AAV82658.1| Ribonuclease D [Idiomarina loihiensis L2TR]
          Length = 390

 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 17/146 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            A+D+E +       +L ++Q+   +GT  +I   A     P L  ++  ++ E + H G
Sbjct: 36  FAIDSEFVRERTYYAQLGLLQIH-ANGTTAVIDPLADIDLEP-LWQLISGDEVETVLHAG 93

Query: 83  RFDIAVLFY-TFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE-------LLGINISKA 134
             DI + F  + G + + +F ++IA+          GL D++           G+ + K+
Sbjct: 94  GEDIELFFQQSSGRQPKQIFDSQIAAGFC-------GLGDSMGYARLVDALFDGVELDKS 146

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHL 160
              ++W    LSDEQL YAA+D  +L
Sbjct: 147 LSRTNWLKRPLSDEQLDYAAADASYL 172


>gi|313837100|gb|EFS74814.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA2]
 gi|314927873|gb|EFS91704.1| 3'-5' exonuclease [Propionibacterium acnes HL044PA1]
 gi|314971873|gb|EFT15971.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA3]
 gi|328907332|gb|EGG27098.1| 3'-5' exonuclease [Propionibacterium sp. P08]
          Length = 412

 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 7/144 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIA-AGQKNAPNLVGMLVDEKREKIFH 80
           +A+DTE         R C++QL   G GT  +  +A +G  +   L   L     + I H
Sbjct: 38  VAIDTERAHGFRYSPRACLIQLRREGSGTHLVDPLAFSGNTDLKPLAEALAGT--QWILH 95

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L  +  +R   +F T++A RL      + GL   ++   G+ + K   +SDW
Sbjct: 96  AAIQDMPCLAMS-DLRPDDLFDTELAGRLLNL--PRVGLGPMIEHYCGVTLLKEHSASDW 152

Query: 141 SADDLSDEQLQYAASDVVHLHALR 164
           S   L  + L YAA DV  L  LR
Sbjct: 153 SRRPLPQDCLVYAALDVELLTDLR 176


>gi|269219399|ref|ZP_06163253.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211192|gb|EEZ77532.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+  L    G     +F T++A  L      +  L+  + E+LG  ++K    
Sbjct: 92  ILHAADQDLPCL-RELGFNPPEIFDTEVAGILL--GFERISLQAEVAEVLGYGLAKEHSM 148

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +DWS   L+ E   YAA DV  L  LR + T  L+  GR +     C 
Sbjct: 149 ADWSERPLAPELRAYAALDVELLIELRERLTAMLRAAGRLEWLHEECE 196


>gi|256395899|ref|YP_003117463.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928]
 gi|256362125|gb|ACU75622.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928]
          Length = 443

 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 23/172 (13%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIA-----AGQKNAPNLVGMLVDEKRE 76
           +AVD E         R  +VQ+   G GT  I  IA     A   + P L G       E
Sbjct: 60  VAVDAERASGYKYSQRAYLVQIRRQGAGTFLIDPIACPDLSALAGDGPALAGA------E 113

Query: 77  KIFHYGRFDIAVLFYTFGVRV---RP-----VFCTKIASRLTRTYTNQHGLKDNLKELLG 128
            + H    D+A L    G+     RP     +F T++ +RL      + GL   + E+L 
Sbjct: 114 WVLHAASQDLACL-AEVGMHPPARRPDGTGGLFDTELGARLG--GHERVGLGPLVAEVLK 170

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           + + K   +SDWS   L +  L+YAA DV  L  +R    ++L+  G+ D A
Sbjct: 171 LELEKGHSASDWSTRPLPEAWLRYAALDVEVLVEVRDIIEDELRGAGKLDWA 222


>gi|158301896|ref|XP_321572.4| AGAP001549-PA [Anopheles gambiae str. PEST]
 gi|157012692|gb|EAA01810.4| AGAP001549-PA [Anopheles gambiae str. PEST]
          Length = 769

 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 4/139 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + +  D E +    +R  + ++QL+   G   +IR+    +    L  +L D+   K+  
Sbjct: 75  NVLGFDCEWVSNQGKRRPVALLQLASHRGLCALIRLCMINRIPQELYDLLNDDNIIKVGV 134

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SS 138
               D  VL   + ++V      +  +   R      G+     E+LG+ + K  +   S
Sbjct: 135 SPYEDARVLREDYRLKVESTLDLRYMAE--RAGLEPLGIARLANEVLGLTLDKHWKVRCS 192

Query: 139 DWSADDLSDEQLQYAASDV 157
           DW + +LSD Q++YAASD 
Sbjct: 193 DWESPELSDRQIKYAASDA 211


>gi|262202194|ref|YP_003273402.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
 gi|262085541|gb|ACY21509.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
          Length = 447

 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKR--EKIF 79
           +AVDTE         R  ++Q+   G GT  +  I     + P+ +  ++D  R  E + 
Sbjct: 71  VAVDTERASGYRYSQRAYLIQIRRRGAGTFLLDPI-----DEPDALAPVIDALRGPEWVL 125

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G     ++ T++A RL      +  L   + E LG+ + K   ++D
Sbjct: 126 HAADQDLPCL-RELGFVCAELYDTELAGRLL--GLAKVNLAAMVAEFLGLGLRKGHGAAD 182

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           WS   L D+ L YAA DV  L  LR      L   G+   A     ++++
Sbjct: 183 WSRRPLPDDWLNYAALDVEVLVELRDAMDAALAAAGKDRWAREEFAYVLN 232


>gi|118566802|gb|ABL01720.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 151

 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 36/74 (48%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G    ++E  G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G 
Sbjct: 20  WGFASMVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGW 79

Query: 177 SDLATSCCNFLMDR 190
              A   C  +  R
Sbjct: 80  LPAALDECRLMQQR 93


>gi|310792006|gb|EFQ27533.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
          Length = 882

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    D+  L    G+ V  +F T +A  +   +  Q  L   LK+ +  +  K  Q
Sbjct: 297 KVFHGAFMDMVWLQRDLGLYVNGLFDTGMACEVL--HYPQKSLAFLLKKFVNFDADKKYQ 354

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    LS+E L YA SD  +L
Sbjct: 355 LADWRVRPLSEEMLYYARSDTHYL 378


>gi|221052342|ref|XP_002257747.1| dna binding protein [Plasmodium knowlesi strain H]
 gi|193807578|emb|CAQ38083.1| dna binding protein, putative [Plasmodium knowlesi strain H]
          Length = 470

 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQK 61
           D   E  ++   A++ + + L  + RR+         LC++QLS  +    +  I   + 
Sbjct: 111 DFIKEIKSKGFTAMSTEGKFLKRVQRRNYPPWSEKKTLCLIQLSSKNLCF-VFNINKLKG 169

Query: 62  NAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             P  V  ++ DEK +K+ H  R D   +F    +++R  F   +     + Y     L+
Sbjct: 170 KIPMCVKEIMEDEKIKKVCHDIRND-KDMFEDQDIQIRNTF--DLYDFCMKNYLYPPSLQ 226

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
             +K  L  N+ K  + S+W + DL +EQ+ YAA+D
Sbjct: 227 FLVKLFLKKNLEKHFRLSNWLSHDLKEEQILYAAAD 262


>gi|189467792|ref|ZP_03016577.1| hypothetical protein BACINT_04184 [Bacteroides intestinalis DSM
           17393]
 gi|189436056|gb|EDV05041.1| hypothetical protein BACINT_04184 [Bacteroides intestinalis DSM
           17393]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 5/51 (9%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           + Y    G++D +L+++ GI     ISK+Q+ S+W A+ L++ Q QYAA+D
Sbjct: 127 QEYVRMFGIQDKSLQKIYGILFGEKISKSQRLSNWEAEHLTEPQKQYAATD 177


>gi|115689891|ref|XP_001200735.1| PREDICTED: similar to exosome component 10, partial
           [Strongylocentrotus purpuratus]
          Length = 376

 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 54/140 (38%), Gaps = 7/140 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E           C++Q+S    D  VD + + +  +    L     D K  K+FH
Sbjct: 140 IAVDLEHHSYRSYLGFTCLMQISTAEHDYVVDTLELRSELQM---LNDAFTDPKIVKVFH 196

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D   L    G+ V  +F T  ASR        H L   L     +   K  Q +DW
Sbjct: 197 GANMDFDWLQRDLGLYVVNMFDTHQASR--SLGFPHHSLASLLSRYCQVEADKQYQLADW 254

Query: 141 SADDLSDEQLQYAASDVVHL 160
               L +E L YA  D  +L
Sbjct: 255 RIRPLPEEMLHYAREDTHYL 274


>gi|221117975|ref|XP_002165683.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 608

 Score = 38.9 bits (89), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 18/160 (11%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA--PNLVGMLV 71
           EC    +  + +D E +     +  + ++QLS G  T  I RI     N   P  +  L+
Sbjct: 104 ECFQENLHFVGLDCEWVS--NEKSHVALIQLSLG-TTCLIYRIPQLSINEEFPFQLKKLL 160

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQH----------GLK 120
           +  +   F    ++     ++ GV VR     +I A R     T ++          GL+
Sbjct: 161 ENPKILKFGVAIYEDVRRLHSHGVAVRGFVDLRILAQRCLPFITTKNSEDENKYKGMGLQ 220

Query: 121 DNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVV 158
               +LL +N+ K++  Q S+W A DLS EQ+ YAA D +
Sbjct: 221 SLSYKLLNMNLDKSRNIQCSNWHATDLSKEQILYAAKDAI 260


>gi|308484203|ref|XP_003104302.1| hypothetical protein CRE_24938 [Caenorhabditis remanei]
 gi|308258271|gb|EFP02224.1| hypothetical protein CRE_24938 [Caenorhabditis remanei]
          Length = 179

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            LKD + E+ G+ + K +  S+W   +L  +Q+ YAA D V LH L
Sbjct: 105 SLKDYVHEVTGLEVLKTETMSNWRVLNLRKDQIWYAAMDTVSLHYL 150


>gi|221124179|ref|XP_002154311.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 608

 Score = 38.9 bits (89), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 18/160 (11%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA--PNLVGMLV 71
           EC    +  + +D E +     +  + ++QLS G  T  I RI     N   P  +  L+
Sbjct: 104 ECFQENLHFVGLDCEWVS--NEKSHVALIQLSLG-TTCLIYRIPQLSINEEFPFQLKKLL 160

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQH----------GLK 120
           +  +   F    ++     ++ GV VR     +I A R     T ++          GL+
Sbjct: 161 ENPKILKFGVAIYEDVRRLHSHGVAVRGFVDLRILAQRCLPFITTKNSEDENKYKGMGLQ 220

Query: 121 DNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVV 158
               +LL +N+ K++  Q S+W A DLS EQ+ YAA D +
Sbjct: 221 SLSYKLLNMNLDKSRNIQCSNWHATDLSKEQILYAAKDAI 260


>gi|313205201|ref|YP_004043858.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
 gi|312444517|gb|ADQ80873.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
          Length = 231

 Score = 38.9 bits (89), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 12  PAECAARYVDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           PA    R    + +DTET     R    ++ +VQ+S  D    + R+      A  L   
Sbjct: 34  PAIAELRKSKVVGIDTETKPSFTRGTYHKVSLVQISTLDHCF-LFRLNKIDFPAA-LAEF 91

Query: 70  LVDEKREKIFHYGRFDIAVL--FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           L DE  +KI    R D+  L   + F    +P  C  I + +      + GL+     L 
Sbjct: 92  LSDENIKKIGLSLRDDLNGLNKHHAF----KPANCVDIQTIVQSYGILELGLQKIYAILF 147

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASD 156
           G  ISK+Q+ ++W   +L+++Q +YAA+D
Sbjct: 148 GKKISKSQRLTNWENPELTEQQQRYAATD 176


>gi|225442373|ref|XP_002281479.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 336

 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 18/166 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R   LCI+QL+  D    +  I  G+K        L      K+ H  
Sbjct: 57  IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGEKLMKACKPALESSYITKVIHDC 115

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128
           + D   L++ FG+++  V  ++IA  L      +    D+    +G              
Sbjct: 116 KRDSEALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRSPDDYISFVGLLADPRYCGISYLE 175

Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              + +   Q    W+   LS+  ++ AA DV  L  +  +  E+L
Sbjct: 176 KKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPYIYYKMMEEL 221


>gi|297743128|emb|CBI35995.3| unnamed protein product [Vitis vinifera]
          Length = 367

 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 18/166 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R   LCI+QL+  D    +  I  G+K        L      K+ H  
Sbjct: 88  IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGEKLMKACKPALESSYITKVIHDC 146

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128
           + D   L++ FG+++  V  ++IA  L      +    D+    +G              
Sbjct: 147 KRDSEALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRSPDDYISFVGLLADPRYCGISYLE 206

Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              + +   Q    W+   LS+  ++ AA DV  L  +  +  E+L
Sbjct: 207 KKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPYIYYKMMEEL 252


>gi|126328720|ref|XP_001364275.1| PREDICTED: similar to exosome component 10, isoform 2 [Monodelphis
           domestica]
          Length = 836

 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FG+ V  +F T  A+R+      +H L   LK    +  +K  Q
Sbjct: 339 KVFHGADMDIEWLQKDFGLYVVNMFDTHQAARILNL--GRHSLDHLLKLYCNVESNKQYQ 396

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L +E   YA  D  +L
Sbjct: 397 LADWRIRPLPEEMFNYARHDTHYL 420


>gi|224538568|ref|ZP_03679107.1| hypothetical protein BACCELL_03462 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519812|gb|EEF88917.1| hypothetical protein BACCELL_03462 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 5/51 (9%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           + Y    G++D +L+++ GI     ISK+Q+ S+W A+ L++ Q QYAA+D
Sbjct: 127 QEYVRMFGIQDKSLQKIYGILFGEKISKSQRLSNWEAEHLTEPQKQYAATD 177


>gi|72388613|gb|AAZ67949.1| At5g24340 [Arabidopsis thaliana]
 gi|72388615|gb|AAZ67950.1| At5g24340 [Arabidopsis thaliana]
 gi|72388617|gb|AAZ67951.1| At5g24340 [Arabidopsis thaliana]
 gi|72388619|gb|AAZ67952.1| At5g24340 [Arabidopsis thaliana]
          Length = 163

 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           KE+L I++SK  Q SDWS   L++EQ  YAA+D
Sbjct: 35  KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 67


>gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 550

 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FG+ V  +F T  ASR       +H L   L     +   K  Q
Sbjct: 330 KVFHGADSDIEWLQRDFGLYVVRLFDTHQASRALNL--ARHSLDHLLTHFCNVASDKRYQ 387

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L +E +QYA +D  +L
Sbjct: 388 LADWRIRPLPEEMVQYARADTHYL 411


>gi|297848138|ref|XP_002891950.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337792|gb|EFH68209.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 569

 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD-VVHLHALR 164
           GL    K++LG++++K +++SDW    L+  QL+YAA D  V +H  R
Sbjct: 484 GLAGLTKKILGVSLNKTRRNSDWEQRPLTQNQLEYAALDAAVLIHIFR 531


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 58/132 (43%), Gaps = 26/132 (19%)

Query: 23  IAVDTETLGLMPRR------------DRLCIVQL---SPGDGTVDIIRIAA---GQ---- 60
           +AVDTET  L P               R C + L    PGDG  D+   AA   GQ    
Sbjct: 407 VAVDTETTSLDPMSCELVGVSLAITPGRACYIPLQHREPGDG--DLFGGAALLQGQIPLD 464

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K    L  +L D+   KI H  ++D+ VL   +GV V P+  T + S    T  N HGL 
Sbjct: 465 KAIATLKPLLEDDAVLKIAHNMKYDLLVL-ARYGVDVAPIEDTMLISYTLDTGRNNHGLD 523

Query: 121 D-NLKELLGINI 131
           +  LK L   NI
Sbjct: 524 ELTLKHLGHENI 535


>gi|126328718|ref|XP_001364197.1| PREDICTED: similar to exosome component 10, isoform 1 [Monodelphis
           domestica]
          Length = 861

 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FG+ V  +F T  A+R+      +H L   LK    +  +K  Q
Sbjct: 339 KVFHGADMDIEWLQKDFGLYVVNMFDTHQAARILNL--GRHSLDHLLKLYCNVESNKQYQ 396

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L +E   YA  D  +L
Sbjct: 397 LADWRIRPLPEEMFNYARHDTHYL 420


>gi|320352196|ref|YP_004193535.1| 3'-5' exonuclease [Desulfobulbus propionicus DSM 2032]
 gi|320120698|gb|ADW16244.1| 3'-5' exonuclease [Desulfobulbus propionicus DSM 2032]
          Length = 210

 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 31/47 (65%)

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           R   + HGL+     + G+ ISK+ ++++W+  +L+ +Q++YAA+D 
Sbjct: 139 RRGVHNHGLRGLAALVCGVRISKSARTTNWANAELTPQQIRYAATDA 185


>gi|296139599|ref|YP_003646842.1| 3'-5' exonuclease [Tsukamurella paurometabola DSM 20162]
 gi|296027733|gb|ADG78503.1| 3'-5' exonuclease [Tsukamurella paurometabola DSM 20162]
          Length = 404

 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 10/168 (5%)

Query: 13  AECAA---RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           AECAA   R    IA+DTE         R  ++Q+   G G   +  I   +  AP +  
Sbjct: 32  AECAAALRRGTGPIALDTERASGFTYSSRAYLIQIKRTGSGLFLLDPIHEPEGLAPVIEA 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +      E + H    D+  L    G     +F T++A RL      +  L     E  G
Sbjct: 92  L---RGVEWVLHAADQDLPCL-RDDGFVCDALFDTELAGRLL--GEPRVNLAAMTSEFTG 145

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             ++K   ++DWS   L  + L YAA DV  L  LR +  E+L   G+
Sbjct: 146 YALAKGHGAADWSTRPLPHDWLNYAALDVELLVDLRDEAYERLDAAGK 193


>gi|72388593|gb|AAZ67939.1| At5g24340 [Arabidopsis thaliana]
 gi|72388595|gb|AAZ67940.1| At5g24340 [Arabidopsis thaliana]
 gi|72388597|gb|AAZ67941.1| At5g24340 [Arabidopsis thaliana]
 gi|72388599|gb|AAZ67942.1| At5g24340 [Arabidopsis thaliana]
 gi|72388601|gb|AAZ67943.1| At5g24340 [Arabidopsis thaliana]
 gi|72388603|gb|AAZ67944.1| At5g24340 [Arabidopsis thaliana]
 gi|72388609|gb|AAZ67947.1| At5g24340 [Arabidopsis thaliana]
 gi|72388611|gb|AAZ67948.1| At5g24340 [Arabidopsis thaliana]
          Length = 163

 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           KE+L I++SK  Q SDWS   L++EQ  YAA+D
Sbjct: 35  KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 67


>gi|72388605|gb|AAZ67945.1| At5g24340 [Arabidopsis thaliana]
 gi|72388607|gb|AAZ67946.1| At5g24340 [Arabidopsis thaliana]
          Length = 163

 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           KE+L I++SK  Q SDWS   L++EQ  YAA+D
Sbjct: 35  KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 67


>gi|329962096|ref|ZP_08300107.1| 3'-5' exonuclease [Bacteroides fluxus YIT 12057]
 gi|328530744|gb|EGF57602.1| 3'-5' exonuclease [Bacteroides fluxus YIT 12057]
          Length = 231

 Score = 38.5 bits (88), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           + Y    G++D +L+++ GI     ISK+Q+ S+W AD LS+ Q  YAA+D        L
Sbjct: 127 QEYVRTFGIQDKSLQKIYGILFGEKISKSQRLSNWEADVLSESQKLYAATDAWAC----L 182

Query: 166 QFTEKLQRLGRS 177
               KLQ L R+
Sbjct: 183 NIYNKLQELKRT 194


>gi|255325116|ref|ZP_05366222.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
 gi|255297681|gb|EET76992.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
          Length = 414

 Score = 38.5 bits (88), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 6/136 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            A+DTE        DR  +VQ+   G GT  ++    G +         V    E I H 
Sbjct: 36  FAIDTERASGYRYDDRAFVVQIRRRGAGT--MLFAPEGHREELTAALAPVLNGTEWIIHA 93

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L +  G+    +F T++A+RL      +  L   + EL  + + K    +DWS
Sbjct: 94  AHSDLPCLGW-LGLFPGSIFDTELAARLA--GFERPNLGTMVAELFDVELEKGYGDADWS 150

Query: 142 ADDLSDEQLQYAASDV 157
              LS+E   YAA DV
Sbjct: 151 TPQLSEELKAYAALDV 166


>gi|308462810|ref|XP_003093685.1| hypothetical protein CRE_23111 [Caenorhabditis remanei]
 gi|308249485|gb|EFO93437.1| hypothetical protein CRE_23111 [Caenorhabditis remanei]
          Length = 324

 Score = 38.5 bits (88), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR----LQFTEKLQRLGRSDLA 180
           + ISK++  S+W    L D+Q+QYAA D + LH +     L ++    R  R+D++
Sbjct: 238 VPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNINIGTALDWSYSPPRPSRTDIS 293


>gi|289740869|gb|ADD19182.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 568

 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +  D E + +   R  + ++QL    G   + R+   ++   +L  +L DE+  K+    
Sbjct: 80  LGFDCEWVTVSGSRRPVALLQLCSNRGYCALFRLCCIRQIPKSLRDLLADEEVIKVGVDP 139

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDW 140
            +D   L   +GV V   F  +  +  T       GL      +L + + K  +   S+W
Sbjct: 140 GYDAQKLAQDYGVGVASTFDLRYLA--TMVGRKPEGLAKLSLSVLKVTLDKHWRLSCSNW 197

Query: 141 SADDLSDEQLQYAASD 156
            A DL+++Q++YAA+D
Sbjct: 198 EAKDLTEKQIEYAAND 213


>gi|332886278|gb|EGK06522.1| hypothetical protein HMPREF9456_00396 [Dysgonomonas mossii DSM
           22836]
          Length = 197

 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 111 RTYTNQHGLKDN-LKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           +++   +G++DN L+ + GI     ISK Q+ S+W  D LSD Q  YAA D
Sbjct: 125 QSFVKDYGIEDNGLQRIYGILFEKRISKGQRLSNWEVDVLSDSQKMYAALD 175


>gi|327537477|gb|EGF24200.1| ribonuclease D [Rhodopirellula baltica WH47]
          Length = 433

 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 8/159 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK----- 77
           I  DTE +     R  LC+VQ++ G     I     G  +      +L D++ E      
Sbjct: 54  IGFDTEFVSEDCYRPELCLVQVAAGKHLAVIDPYTVG--DTKPFWDILTDDQIEPGSRVV 111

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H  R +I   +   G  +  +F T++A+           L   +++L+G  + K +  
Sbjct: 112 IAHAAREEIRFAYRYSGRPIAGLFDTQLAAGFV-GIEYPASLATLVQKLVGQTLPKGETR 170

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           ++W    L+ +QL YA  DV  L  +  +    ++ L R
Sbjct: 171 TNWRHRPLTKDQLTYALHDVTTLAEMHSKLIADVKALDR 209


>gi|154494239|ref|ZP_02033559.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC
           43184]
 gi|154086101|gb|EDN85146.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC
           43184]
          Length = 193

 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 5/51 (9%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           + Y  Q G++D +L+++  I     ISK Q+ S+W AD LSD Q +YAA D
Sbjct: 129 QNYVGQFGIEDASLQKIYAILFNKKISKGQRLSNWEADVLSDAQKKYAALD 179


>gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio]
          Length = 500

 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FG+ V  +F T  A+R      N   L   LK    ++  K  Q
Sbjct: 361 KVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRN--SLDHLLKVYCDVSSDKRYQ 418

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L DE L+YA +D  +L
Sbjct: 419 LADWRIRPLPDEMLKYAQADTHYL 442


>gi|195644322|gb|ACG41629.1| hypothetical protein [Zea mays]
          Length = 202

 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156
           + A R+ R    Q GL+  ++ ++G+N+ K Q+   S W A  LS EQ++YA  D
Sbjct: 132 RXAERMXRPDLRQAGLRAXVQVVMGVNLVKPQRVTMSRWDASCLSYEQIKYACID 186


>gi|157874025|ref|XP_001685508.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128580|emb|CAJ08712.1| hypothetical protein LMJF_32_1880 [Leishmania major strain
           Friedlin]
          Length = 753

 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 32/195 (16%)

Query: 17  ARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVD 72
           ARY D   IA+D E   L  R   +CI+ L+       +D++ + A    A + +  +++
Sbjct: 541 ARYSDTLTIALDLEGRSLG-RMGSICIITLATYSTVYIIDVVMLGAEALYAGSPLKRVLE 599

Query: 73  EKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-------------- 117
            +   K+    R D   LF+ +GVR++ V   +I+S      T+ H              
Sbjct: 600 SRDIMKLMFDCRADCDALFFLYGVRLQNVCDLQISSCFALFPTSPHLPGMKSVFLVLGLF 659

Query: 118 -----GLKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKL 171
                G+K+  + L      +   S DW  +  L+D  +QY A DV +  A +L   + +
Sbjct: 660 TDEDAGIKNAGRHLFN---PRCGGSFDWWEERPLTDVLVQYCAVDVKYFFAAQLILQDHV 716

Query: 172 Q---RLGRSDLATSC 183
           +   RLG + LA+ C
Sbjct: 717 EQGCRLGEARLASVC 731


>gi|212704372|ref|ZP_03312500.1| hypothetical protein DESPIG_02427 [Desulfovibrio piger ATCC 29098]
 gi|212672197|gb|EEB32680.1| hypothetical protein DESPIG_02427 [Desulfovibrio piger ATCC 29098]
          Length = 201

 Score = 38.1 bits (87), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            GL+     L G  ISK  Q S+WS  +LS  Q+ YAA+D     A+ L+  E
Sbjct: 141 QGLRTLAANLFGQRISKGPQCSNWSVMELSKRQVIYAATDAWIGRAIYLRMRE 193


>gi|237808321|ref|YP_002892761.1| ribonuclease D [Tolumonas auensis DSM 9187]
 gi|237500582|gb|ACQ93175.1| ribonuclease D [Tolumonas auensis DSM 9187]
          Length = 365

 Score = 38.1 bits (87), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 9/159 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIF 79
           + +DTE + +     +L ++QL  +  D  +D + I     N+ NL+   +  + R  +F
Sbjct: 25  LLLDTEFIRVSTYFPKLGLLQLHLNAVDYLIDPLAI-----NSINLLWDAIFSDHRLFVF 79

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H  + D+ VL          VF T++A+     Y    G    ++++  + ++K Q  +D
Sbjct: 80  HSCKEDLDVLQVCAQKLPGRVFDTQVAAAFL-GYGASLGYAGLVEKVCDVTVAKDQTLTD 138

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           W A  L+  Q  YAA DV +L  L    +++L   G+++
Sbjct: 139 WLARPLTAAQKLYAAKDVSYLQYLYDHLSQELNTTGKTE 177


>gi|157876102|ref|XP_001686412.1| exosome subunit rrp6p homologue [Leishmania major strain Friedlin]
 gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain
           Friedlin]
          Length = 742

 Score = 38.1 bits (87), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 17/188 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E       +   C++Q+S    D  VD +++   + +   L  + ++    K+ H
Sbjct: 254 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL---RSSMGALAPVFLNPSILKVLH 310

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI  L   F + V  +F T +A    +T    + L   +     + ++K  Q++DW
Sbjct: 311 GAREDIRWLQKDFSLYVVNLFDTGVA---LQTLHMPYSLAFAVDHFCQVKLNKKYQTADW 367

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL-----GRSDLATSCCNFLMDRAELDL 195
               LS E + YA  D   L    L   ++L+ L     GR+ + +   +   +  +L L
Sbjct: 368 RVRPLSAEMVHYARQDTHFL----LYVHDRLKALLLNSEGRASIGSVLVHVYNESKQLSL 423

Query: 196 LGWENVDI 203
             +E  ++
Sbjct: 424 QIYEKPNV 431


>gi|167555226|ref|NP_001107878.1| exonuclease 3'-5' domain-containing protein 2 [Danio rerio]
 gi|166796362|gb|AAI59254.1| Zgc:175195 protein [Danio rerio]
          Length = 617

 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 114 TNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD-----VVHLHALRLQ 166
           TN   LK   ++LL + + K+ +   SDW A++LS EQ+ YAA D      +  H L + 
Sbjct: 207 TNGLSLKSLAEDLLNVTLDKSVELRCSDWEAEELSPEQITYAARDAQISIALFFHLLGMN 266

Query: 167 FTEKLQRLGRSDL--ATSCCNFLMD 189
               L   G +     ++CC  L+D
Sbjct: 267 TERHLPAEGEAVFLHLSACCQGLVD 291


>gi|325186923|emb|CCA21467.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1069

 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 118  GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            GL D  K  LG  + K  Q SDW    LS  Q++YAA D   L    L   E+L+ +G
Sbjct: 1013 GLSDLAKSSLGFPLCKRMQRSDWEQRPLSSAQIEYAALDAYVL----LMIYERLREIG 1066


>gi|224088954|ref|XP_002308585.1| predicted protein [Populus trichocarpa]
 gi|222854561|gb|EEE92108.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 18/168 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R   LCI+QL+  D    +  I  G+         L      K+ H  
Sbjct: 55  IGFDCEGVNLC-RHGALCIMQLAFPDAIYLVDAINGGESLIKVCKPALESSYITKVIHDC 113

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------------- 128
           + D   L++ FG+++  V  T+IA  L      +  L  +    +G              
Sbjct: 114 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRTRLPGDYISFVGLLADPRYCGVSYLE 173

Query: 129 ---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              + +   Q    W+   LS+  ++ AA DV  L  +  +  EKL  
Sbjct: 174 KEEVRVLLRQDPMFWTYRPLSEMMIRAAADDVRFLLCIYYKMMEKLNE 221


>gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana]
          Length = 237

 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 7/156 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
             AVDTE   L        ++Q+S    D  VD I   A       L  +  D    K+F
Sbjct: 76  VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTI---ALHDVMSILRPVFSDPNICKVF 132

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +K  Q  D
Sbjct: 133 HGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKLLQRED 190

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           W    LS+E ++YA +D  +L  +    T +L++L 
Sbjct: 191 WRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 226


>gi|311739578|ref|ZP_07713413.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305394|gb|EFQ81462.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 414

 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 10/138 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML--VDEKREKIF 79
            A+DTE        DR  +VQ+   G GT+    + A + +   L   L  V    E I 
Sbjct: 36  FAIDTERASGYRYDDRAFVVQIRRRGAGTM----LFAPEGHREELTAALAPVLNGAEWII 91

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L +  G+    +F T++A+RL      +  L   + EL  + + K    +D
Sbjct: 92  HAAHSDLPCLGW-LGLFPGSIFDTELAARLA--GFERPNLGTMVGELFDVELEKGYGDAD 148

Query: 140 WSADDLSDEQLQYAASDV 157
           WS   LS+E   YAA DV
Sbjct: 149 WSTPQLSEELKAYAALDV 166


>gi|72388621|gb|AAZ67953.1| At5g24340-like protein [Arabidopsis lyrata]
          Length = 163

 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           KE+L I++SK  Q SDWS   L++EQ  YAA+D
Sbjct: 35  KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 67


>gi|15237941|ref|NP_197822.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
 gi|10177895|dbj|BAB11227.1| unnamed protein product [Arabidopsis thaliana]
 gi|30102678|gb|AAP21257.1| At5g24340 [Arabidopsis thaliana]
 gi|110743600|dbj|BAE99637.1| hypothetical protein [Arabidopsis thaliana]
 gi|332005912|gb|AED93295.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
          Length = 505

 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           KE+L I++SK  Q SDWS   L++EQ  YAA+D
Sbjct: 158 KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 190


>gi|297808445|ref|XP_002872106.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317943|gb|EFH48365.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 508

 Score = 38.1 bits (87), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           KE+L I++SK  Q SDWS   L++EQ  YAA+D
Sbjct: 161 KEMLDISLSKELQCSDWSYRPLTEEQKLYAATD 193


>gi|303325512|ref|ZP_07355955.1| 3'- 5' exonuclease domain protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863428|gb|EFL86359.1| 3'- 5' exonuclease domain protein [Desulfovibrio sp. 3_1_syn3]
          Length = 216

 Score = 38.1 bits (87), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
            GL+     L G  ISK  Q S+WS  +LS  Q+ YAA+D 
Sbjct: 137 QGLRTLAANLFGWRISKGSQCSNWSLMELSQRQIAYAATDA 177


>gi|167765134|ref|ZP_02437247.1| hypothetical protein BACSTE_03520 [Bacteroides stercoris ATCC
           43183]
 gi|167696762|gb|EDS13341.1| hypothetical protein BACSTE_03520 [Bacteroides stercoris ATCC
           43183]
          Length = 210

 Score = 38.1 bits (87), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           L G  ISK+Q+ S+W AD L+  Q QYAA+D        L    +LQ L R+
Sbjct: 147 LFGEKISKSQRLSNWEADVLTPSQQQYAATDAWAC----LNIYNRLQELKRT 194


>gi|255549190|ref|XP_002515649.1| 3-5 exonuclease, putative [Ricinus communis]
 gi|223545192|gb|EEF46701.1| 3-5 exonuclease, putative [Ricinus communis]
          Length = 523

 Score = 38.1 bits (87), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           E+LGI++SK  Q SDWS   L++EQ  YAA D
Sbjct: 167 EVLGISLSKELQCSDWSHRPLTEEQKAYAAID 198


>gi|170112858|ref|XP_001887630.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164637532|gb|EDR01817.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 854

 Score = 38.1 bits (87), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E          LC++Q+S    D  VD++ +   +     L  +  D K  K+ H
Sbjct: 264 IAVDLEHHSYRSYTGFLCLMQISDRENDWIVDLLAL---RDEIEQLNEIFTDPKIVKVLH 320

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L   F V +  +F T  AS+L      +HGL + L+        K  Q +DW
Sbjct: 321 GAESDVVWLQQDFNVYIVNLFDTFHASKLLDF--PRHGLANLLEMYCDYIPDKRYQLADW 378

Query: 141 SADDLSDEQLQYAASDV 157
               L  E L YA SD 
Sbjct: 379 RIRPLPQEMLDYARSDT 395


>gi|156095069|ref|XP_001613570.1| DNA binding protein [Plasmodium vivax SaI-1]
 gi|148802444|gb|EDL43843.1| DNA binding protein, putative [Plasmodium vivax]
          Length = 481

 Score = 38.1 bits (87), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 7/127 (5%)

Query: 34  PRRDR--LCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLF 90
           P R++  LC++QLS  +    +  I   +   P  V  ++ DEK  K+ H  R D   +F
Sbjct: 133 PCREKKTLCLIQLSSKELCF-VFNINKLKGKIPMCVKEIMEDEKIRKVCHDIRND-QDMF 190

Query: 91  YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL 150
               V++R  F   +     +++     L+  +K  L  N+ K  + S+W +DDL +EQ+
Sbjct: 191 LDQHVQIRNSF--DLYDFCMQSFLYPPSLQFLVKLFLKKNLEKQFRLSNWLSDDLREEQI 248

Query: 151 QYAASDV 157
            YAA+D 
Sbjct: 249 LYAAADA 255


>gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 892

 Score = 38.1 bits (87), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +K  Q
Sbjct: 194 KVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKLLQ 251

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             DW    LS+E ++YA +D  +L  +    T +L++L   D ++
Sbjct: 252 REDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSS 296


>gi|283458265|ref|YP_003362884.1| ribonuclease D [Rothia mucilaginosa DY-18]
 gi|283134299|dbj|BAI65064.1| ribonuclease D [Rothia mucilaginosa DY-18]
          Length = 449

 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 93  FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
            G+R   +F T++ +RL      +  L   ++ELLG  ++K     DWS   L +  L Y
Sbjct: 152 LGMRPNRLFDTELGARLA--GLERVNLGATVEELLGYKLAKKHSKEDWSRRPLPESWLNY 209

Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           A  DV  L  LR    + L++ G+   A     +L
Sbjct: 210 ALLDVDVLIDLRDALEDLLRQQGKLQYALEEFEYL 244


>gi|46249983|gb|AAH68411.1| Zgc:175195 protein [Danio rerio]
          Length = 504

 Score = 37.7 bits (86), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 114 TNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD-----VVHLHALRLQ 166
           TN   LK   ++LL + + K+ +   SDW A++LS EQ+ YAA D      +  H L + 
Sbjct: 94  TNGLSLKSLAEDLLNVTLDKSVELRCSDWEAEELSPEQITYAARDAQISIALFFHLLGMN 153

Query: 167 FTEKLQRLGRSDL--ATSCCNFLMD 189
               L   G +     ++CC  L+D
Sbjct: 154 TERHLPAEGEAVFLHLSACCQGLVD 178


>gi|242053889|ref|XP_002456090.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor]
 gi|241928065|gb|EES01210.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor]
          Length = 239

 Score = 37.7 bits (86), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 13/94 (13%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-LTRTYTNQHGLKDNLK 124
            VG+ VD   E+++     D  +L  T      PV    +A+  L+R    + GLK  ++
Sbjct: 117 FVGVSVDGDVERLY----CDCKILVAT------PVDLRHVAAEVLSRPELRRAGLKALVR 166

Query: 125 ELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156
           E++G+ + K +    S WS   LS EQ++YAA D
Sbjct: 167 EVMGVVMEKPKHVTMSRWSRRPLSPEQVRYAAID 200


>gi|218263130|ref|ZP_03477349.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222915|gb|EEC95565.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
           DSM 18315]
          Length = 193

 Score = 37.7 bits (86), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 5/51 (9%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           + Y  Q G++D +L+++  I     ISK Q+ S+W AD LSD Q +YAA D
Sbjct: 129 QNYVGQFGIEDASLQKIYAILFNKKISKGQRLSNWEADVLSDAQKKYAALD 179


>gi|288925838|ref|ZP_06419769.1| 3'-5' exonuclease domain protein [Prevotella buccae D17]
 gi|288337493|gb|EFC75848.1| 3'-5' exonuclease domain protein [Prevotella buccae D17]
          Length = 212

 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 44/176 (25%)

Query: 21  DAIAVDTETLGLMPR-------------RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           D +  DTET  +  R             RD   + +L+    T DIIR+   +      +
Sbjct: 46  DILGFDTETKPVFRRGQHSKVALLQVANRDACILFRLNYTGMTSDIIRLL--EDRTVKKI 103

Query: 68  GM-----LVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           G+     ++  +R K F  G F D+  +    G+  R          L + Y N      
Sbjct: 104 GLSWHDDILSLQRRKPFQVGSFIDLQDIVGDLGIEDRS---------LQKLYAN------ 148

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
               L    ISK Q+ ++W AD L D Q QYAA+D        ++  E+++RL R+
Sbjct: 149 ----LFQEKISKNQRLTNWEADVLKDSQKQYAATDAWTC----IKLYEEIERLKRT 196


>gi|226306331|ref|YP_002766291.1| ribonuclease D [Rhodococcus erythropolis PR4]
 gi|226185448|dbj|BAH33552.1| putative ribonuclease D [Rhodococcus erythropolis PR4]
          Length = 429

 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+    +F T++A RL      + GL   ++  L + + K   +
Sbjct: 102 VLHSADQDLPGL-AELGLTPAELFDTELAGRLA--GFERVGLAAIVERTLRVELRKGHGA 158

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +DWS   L D  L YAA DV  L  LR     +L+  G+ + A     ++
Sbjct: 159 ADWSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGKLEWAKEEFEYI 208


>gi|330802281|ref|XP_003289147.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
 gi|325080770|gb|EGC34311.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
          Length = 1045

 Score = 37.7 bits (86), Expect = 0.94,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           +V+  A+D E       +  +C++Q+S   G   II   A + +   L  +  +    K+
Sbjct: 269 HVEEFAMDLEHHNYRSYQGFVCLMQIST-RGEDFIIDTLALRSHIHMLNNVTTNPAIVKV 327

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    DI  L   FG+ +  +F T  ASR+    +    L   LK    ++ +K  Q +
Sbjct: 328 LHGSDSDIKWLQRDFGIYIVNMFDTGQASRVLEYPSAS--LAFLLKYFCAVDANKKYQLA 385

Query: 139 DWSADDLSDEQLQYAASDVVHL 160
           DW    + +E ++YA  D  +L
Sbjct: 386 DWRIRKIPEEMIKYAREDTHYL 407


>gi|302837201|ref|XP_002950160.1| 3'-5' exonuclease [Volvox carteri f. nagariensis]
 gi|300264633|gb|EFJ48828.1| 3'-5' exonuclease [Volvox carteri f. nagariensis]
          Length = 313

 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 23/118 (19%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVF---CTKIASR----LTRTYTNQHGLKDNLKELLGI 129
           K+F+  R D   L++  GV +R V     +++A R    + R      GL   L+  L  
Sbjct: 143 KLFYDVRCDAEALYHQHGVSLRGVVDLQLSEVAYRRYGPVVRRVGYVIGLTRALECYLAP 202

Query: 130 NISKAQQSSD----------------WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            + +  QS+                 W    LS EQ++YAA DV++LH L  +FT  L
Sbjct: 203 ELRERWQSTAVDKRLLHETFNRDLRYWDRRPLSQEQVRYAADDVLYLHHLHREFTAAL 260


>gi|229491276|ref|ZP_04385102.1| ribonuclease D [Rhodococcus erythropolis SK121]
 gi|229321815|gb|EEN87610.1| ribonuclease D [Rhodococcus erythropolis SK121]
          Length = 431

 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+    +F T++A RL      + GL   ++  L + + K   +
Sbjct: 104 VLHSADQDLPGL-AELGLTPAELFDTELAGRLA--GFERVGLAAIVERTLRVELRKGHGA 160

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +DWS   L D  L YAA DV  L  LR     +L+  G+ + A     ++
Sbjct: 161 ADWSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGKLEWAKEEFEYI 210


>gi|32473842|ref|NP_866836.1| ribonuclease D [Rhodopirellula baltica SH 1]
 gi|32444378|emb|CAD74377.1| ribonuclease D [Rhodopirellula baltica SH 1]
          Length = 493

 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 8/159 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK----- 77
           I  DTE +     R  LC+VQ++ G     I     G  +      +L D++ E      
Sbjct: 114 IGFDTEFVSEDCYRPELCLVQVAAGKHLAVIDPYTVG--DTKPFWDILTDDQIEPGSRVV 171

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H  R +I   +   G  +  +F T++A+           L   +++L+G  + K +  
Sbjct: 172 IAHAAREEIRFAYRYSGRPIAGLFDTQLAAGFV-GIEYPASLATLVQKLVGQTLPKGETR 230

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           ++W    L+ +QL YA  DV  L  +  +    ++ L R
Sbjct: 231 TNWRHRPLTKDQLTYALHDVTTLAEMHSKLIADVKALDR 269


>gi|300932462|ref|ZP_07147718.1| hypothetical protein CresD4_00200 [Corynebacterium resistens DSM
           45100]
          Length = 429

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           IA+DTE   +    DR  ++QL   G GT  +       K       +L +     + H 
Sbjct: 22  IAIDTERAAMYRFDDRAYLIQLRREGAGTFIVDPTGHPAKLREWQDALLAETP--WLLHA 79

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L    G +   +  T+IA+RL   +  + GL   L+E L I+I K + ++DWS
Sbjct: 80  AHTDLPALL-ALGWQPSVLLDTQIAARLLGCH--RLGLSLLLEEFLSISIPKDKGNADWS 136

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
              L +  L YAA DV +L  +     ++L  L R D     C 
Sbjct: 137 QRPLPNSMLAYAALDVEYLVPMHDMMIKELAELNRLDWYRQECE 180


>gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 891

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 19/167 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQK------NAPNLVGMLVDEK 74
            AVDTE   L        ++Q+S    D  VD I +           + PN+        
Sbjct: 140 FAVDTEQHSLRSFLGFTALIQISTHEKDFLVDTIVLHDAMSILRPVFSEPNIC------- 192

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+FH    D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +K 
Sbjct: 193 --KVFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKL 248

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            Q  DW    LS+E ++YA +D  +L  +    T +L++L   D ++
Sbjct: 249 LQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTAELKQLATEDSSS 295


>gi|157133260|ref|XP_001656205.1| 3-5 exonuclease [Aedes aegypti]
 gi|108870910|gb|EAT35135.1| 3-5 exonuclease [Aedes aegypti]
          Length = 771

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +  D E +    +R  + ++QL+   G   +IR+   ++  P L  +L D    K
Sbjct: 67  REFRVLGFDCEWVNEQGKRHPVALLQLATHRGLCALIRLCEMKRIPPELGELLNDPAIVK 126

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           +      D  +L + + ++V      + +A R        +G+    ++ LG+ + K  +
Sbjct: 127 VGVGPLEDAKLLRHDYNLKVESTLDLRHLADRCG--VPGPYGMAKLAEKTLGVKLDKHWR 184

Query: 137 --SSDWSADDLSDEQLQYAASDV 157
             +S+W    L++ Q+QYAASD 
Sbjct: 185 IRASNWENAQLTERQIQYAASDA 207


>gi|218749845|ref|NP_001136335.1| egalitarian [Nasonia vitripennis]
          Length = 829

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 23/193 (11%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK--NAPNLVGM 69
           P + AA     ++ D E + + P+  RL ++Q+    G + I  +        A  L  +
Sbjct: 401 PRKSAADGKSVVSFDCEGINVGPK-GRLTLLQIGTMSGLIYIFDLITCPNILQAGGLQKL 459

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR-----------------T 112
           L  E   K+ H  + D A LF+ FG+ +  +F T+ A  +                   T
Sbjct: 460 LESENVIKVIHDCKNDSANLFHQFGITLVNIFDTQAAHSVIEYQNTGKPVYKVKNANLNT 519

Query: 113 YTNQHGLKDN-LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             + +G   N LKE L  NI +  Q   W+   L+ + + YA+SDV  L  L      KL
Sbjct: 520 LCDLYGAPSNVLKEQLK-NIYRRDQRY-WARRPLTRDMIVYASSDVQSLVPLIYNAMSKL 577

Query: 172 QRLGRSDLATSCC 184
            +     L    C
Sbjct: 578 IKPEMQKLFNELC 590


>gi|156543102|ref|XP_001605365.1| PREDICTED: similar to ENSANGP00000024697 [Nasonia vitripennis]
          Length = 1018

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K E ++H G F++++++Y  G+++RP F         +        K+ ++ +LG N   
Sbjct: 253 KAEALYHLGDFELSLVYYYRGMKIRPEF--------DQFRLGVQKAKEAIQNILGSNSVP 304

Query: 134 AQQSSDWSADDLSDE 148
           A + +D   D+L +E
Sbjct: 305 APKKTDSRTDELLEE 319


>gi|320167779|gb|EFW44678.1| exosome component 10 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 945

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 3/141 (2%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           V   A+D E       +  +C++Q+S     V +I   A + +  +L  +  +    K+F
Sbjct: 312 VSEFAIDLEHHSYRSLQGFVCLMQVSTRTEDV-VIDTLAVRSSMHHLREVFANPNILKVF 370

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L + FG+    +F T  A+R+       + L   L+    +   K  Q +D
Sbjct: 371 HGADMDVVWLQHDFGIYTINMFDTGQAARVLEL--GSYSLAHLLRYFCNVTADKKYQLAD 428

Query: 140 WSADDLSDEQLQYAASDVVHL 160
           W    +  E LQYA  D  +L
Sbjct: 429 WRIRPIPAEMLQYAREDTHYL 449


>gi|255086371|ref|XP_002509152.1| predicted protein [Micromonas sp. RCC299]
 gi|226524430|gb|ACO70410.1| predicted protein [Micromonas sp. RCC299]
          Length = 1227

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           V C + A+ + R + +Q GL    + LLG  + K ++  DWS   L++ Q+ Y A D 
Sbjct: 610 VLCLQRAA-IDRGHGSQPGLSSVCQALLGQPLDKRERCGDWSRRPLTESQVAYGAQDA 666


>gi|229817486|ref|ZP_04447768.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM
           20098]
 gi|229785275|gb|EEP21389.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM
           20098]
          Length = 430

 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+   F   G+  + +F T++A+R+     ++ GL    +  LGI ++K   +
Sbjct: 94  IIHDAMMDLPG-FAQIGMTPQRLFDTEMAARML--GLSRFGLAAVTERYLGITLAKEHSA 150

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +DWS   L  +   YAA DV  L  L  +    L+  G+ + A
Sbjct: 151 ADWSYRPLPRDWRNYAALDVELLIELERKMRADLKASGKEEWA 193


>gi|308474798|ref|XP_003099619.1| hypothetical protein CRE_22979 [Caenorhabditis remanei]
 gi|308266474|gb|EFP10427.1| hypothetical protein CRE_22979 [Caenorhabditis remanei]
          Length = 398

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           LK ++G  ISK++  S W+  +L  +Q+ YAA D + LH + ++
Sbjct: 231 LKRVVGKEISKSETMSCWTVPELRHDQIHYAAMDAIALHYINIK 274


>gi|307212494|gb|EFN88225.1| Exosome component 10 [Harpegnathos saltator]
          Length = 804

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 15/177 (8%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           RY + IAVD E       +   C++Q+S  D T  +I     +     L  +       K
Sbjct: 192 RY-NEIAVDLEHHSYRSFQGVTCLMQISTVD-TDYLIDTLILRSELHQLNEIFTKPTILK 249

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           +FH   FDI  L     + V  +F T + A +L   Y +   L   LK+   IN +K  Q
Sbjct: 250 VFHGADFDIQWLQRDLSLYVVNMFDTHQAAKQLNFPYLSLAFL---LKKYCNINPNKHFQ 306

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL--GRS-------DLATSCC 184
            +DW    L +E ++YA  D  +L  ++     +L  L  G+S       D++T  C
Sbjct: 307 LADWRIRPLPEELMKYAREDTHYLLHIKDMLKNELIELANGQSNILKAVYDMSTDIC 363


>gi|255730563|ref|XP_002550206.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132163|gb|EER31721.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 786

 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 3/151 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + IAVD E          +C++Q+S  D    II   A +     L  +  +    K+FH
Sbjct: 252 EEIAVDLEHHDFRTYYGIVCLMQISNRDQDW-IIDTLALRDELTELNEVFTNPNIVKVFH 310

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L    G+ +  +F T  ASR      ++  L   L+       SK  Q +DW
Sbjct: 311 GAFMDIIWLQRDLGLYIVSLFDTYHASRALG--LSRFSLAYLLEHYAQFKTSKKYQLADW 368

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               LS   L YA SD   L  +  Q   KL
Sbjct: 369 RIRPLSSPMLAYARSDTHFLLYIYDQLKNKL 399


>gi|303286107|ref|XP_003062343.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455860|gb|EEH53162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 149

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           V   AVD E       R   C++Q+S  +    +  +A   K   +L     D  ++K+ 
Sbjct: 18  VAEFAVDLEHHSYRSFRGFTCVIQVSTRERDFVVDALALRSKMRAHLARHFEDATKQKVM 77

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG---LKD---NLKELLGINISK 133
           H    D+  L   FG+ V  +F T  A+R+    +   G   L D    LK    ++  K
Sbjct: 78  HGADMDVQWLQRDFGIYVVNMFDTGQAARVLELPSKGLGAFYLTDAAYALKHFCDVDADK 137

Query: 134 AQQSSDW 140
             Q +DW
Sbjct: 138 RYQLADW 144


>gi|308490719|ref|XP_003107551.1| hypothetical protein CRE_13400 [Caenorhabditis remanei]
 gi|308250420|gb|EFO94372.1| hypothetical protein CRE_13400 [Caenorhabditis remanei]
          Length = 168

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           LKD++K +  +++ K +  SDW+A  L D+Q+ YAA D V L+ L +
Sbjct: 58  LKDHVKIVTEMDLLKNETMSDWNAPRLRDDQVWYAAMDAVCLYYLNV 104


>gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo]
          Length = 888

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L   FG+ +  +F T  A+RL      +H L   LK    ++  K  Q
Sbjct: 359 KVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNL--GKHSLDHLLKLYCSVDADKQYQ 416

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L +E +QYA  D  +L
Sbjct: 417 LADWRIRPLPEEMIQYARDDTHYL 440


>gi|195625840|gb|ACG34750.1| hypothetical protein [Zea mays]
          Length = 202

 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156
           + A R+ R    Q GL+  ++ ++G+N+ K Q+   S W A  LS EQ++YA  D
Sbjct: 132 RAAERMNRPDLRQAGLRALVQVVMGVNLVKPQRVTMSRWDASCLSYEQIKYACID 186


>gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus]
          Length = 910

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L   FG+ +  +F T  A+RL      +H L   LK    ++  K  Q
Sbjct: 381 KVLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNL--GKHSLDHLLKLYCSVDADKQYQ 438

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L +E +QYA  D  +L
Sbjct: 439 LADWRIRPLPEEMIQYARDDTHYL 462


>gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio]
          Length = 899

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FG+ V  +F T  A+R      N   L   LK    ++  K  Q
Sbjct: 361 KVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRN--SLDHLLKVYCDVSSDKRYQ 418

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L DE L+YA +D  +L
Sbjct: 419 LADWRIRPLPDEMLKYAQADTHYL 442


>gi|268533708|ref|XP_002631983.1| Hypothetical protein CBG10261 [Caenorhabditis briggsae]
 gi|187031193|emb|CAP29729.1| hypothetical protein CBG_10261 [Caenorhabditis briggsae AF16]
          Length = 413

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 128 GINISKAQQSSDWSADDLSDEQLQY 152
           GI ISK +  SDW+A++L D+Q+QY
Sbjct: 336 GIEISKTETMSDWTAEELRDDQMQY 360


>gi|289743269|gb|ADD20382.1| putative salivary expressed 3'-5' exonuclease [Glossina morsitans
           morsitans]
          Length = 339

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 4/142 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R+   +  D E + +   R+ + ++QL+  +G   + R+        +L  +L D++  
Sbjct: 67  CRHYKVLGFDCEWITVGRVRNPVALLQLASPNGFCGLFRLRHMHHIPESLKNLLRDKEII 126

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+      D   L   +G+ V   F  +  + + R      GL+   + LL ++  K   
Sbjct: 127 KVGVDPAGDARKLQEDYGIYVASTFDIRYLAVMIRC--KPLGLEKLSRSLLNVDFVKRGY 184

Query: 137 --SSDWSADDLSDEQLQYAASD 156
              S+W  D L D+Q++YAA+D
Sbjct: 185 IGRSNWEFDKLDDDQVEYAAND 206


>gi|255542852|ref|XP_002512489.1| 3-5 exonuclease, putative [Ricinus communis]
 gi|223548450|gb|EEF49941.1| 3-5 exonuclease, putative [Ricinus communis]
          Length = 570

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           GL    K+LLG  ++K +++S+W    LS  QL+YAA D V L
Sbjct: 476 GLSGLAKKLLGAGLNKTRRNSNWEQRPLSQHQLEYAALDAVVL 518


>gi|226533262|ref|NP_001141102.1| hypothetical protein LOC100273185 [Zea mays]
 gi|194702630|gb|ACF85399.1| unknown [Zea mays]
          Length = 202

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156
           + A R+ R    Q GL+  ++ ++G+N+ K Q+   S W A  LS EQ++YA  D
Sbjct: 132 RAAERMNRPDLRQAGLRALVQVVMGVNLVKPQRVTMSRWDASCLSYEQIKYACID 186


>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
 gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
          Length = 937

 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 51/124 (41%), Gaps = 16/124 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGM--- 69
           AR    +AVDTET  L     RL  V LS G G    I +  G  +     P  + M   
Sbjct: 351 ARAAHVVAVDTETASLDSVTGRLVGVSLSTGAGKACYIPLGHGGTDMFAEKPEQIAMGDA 410

Query: 70  -------LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                    D+   K+ H  ++DI VL    GV V P   T + S       +QHGL D 
Sbjct: 411 LERLGALFADDAVLKVGHNLKYDIGVL-AQHGVTVAPYDDTLLMSFALDAGKHQHGL-DE 468

Query: 123 LKEL 126
           L +L
Sbjct: 469 LAKL 472


>gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 593

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML--VDEKREKIFHYG 82
            D ET G +    RL  +QL  GD   D   + A Q   P +   +  + E    +FH G
Sbjct: 3   ADCETNGFLHVMTRLWTIQL--GDANTDEATVYADQIGFPPIKDAIKRLKEADRVVFHNG 60

Query: 83  R-FDIAVL--FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           + FDI  +  FY   +    V+ T +A+RL       + L D  K L         +  D
Sbjct: 61  QGFDIHAINHFYPGTLTPHQVWDTLVAARLLNPSERANSLDDWGKRL----GEYKGEFKD 116

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           +S    S E ++YA  DVV    L  +   +L+  G+S
Sbjct: 117 FSR--FSKELVEYARQDVVVTRKLYHKLEPQLRNWGQS 152


>gi|221121078|ref|XP_002157951.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 758

 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 7/145 (4%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           + V  IAVD E       +  LC++Q+S    D  +D +   A ++    +  +  D   
Sbjct: 258 KKVKEIAVDLEHHSYRSFQGFLCLMQISTRFEDFIIDTL---ALREEMYKINEIFSDPNI 314

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    DI  L   FGV V  +F T  A+R    + ++  L   L +   ++  K  
Sbjct: 315 LKVMHGADSDIGWLQRDFGVYVVNMFDTGQAAR--TLHEDRFSLAYLLSKYCNVDAQKQY 372

Query: 136 QSSDWSADDLSDEQLQYAASDVVHL 160
           Q +DW    +  E + YA  D  +L
Sbjct: 373 QLADWRIRPIPKEMILYAQEDTHYL 397


>gi|255075999|ref|XP_002501674.1| predicted protein [Micromonas sp. RCC299]
 gi|226516938|gb|ACO62932.1| predicted protein [Micromonas sp. RCC299]
          Length = 725

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 109 LTRTYTNQH--GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----VVHLHA 162
           L   Y  +H  GL      +LG  + KA + SDWS   L+  Q+ YAA D    V  +  
Sbjct: 645 LKEHYQRKHLVGLSHLTAAVLGKPLDKATRMSDWSKRPLTPRQVTYAALDAWVLVELMRT 704

Query: 163 LRLQFTEKLQRL 174
           LR    E+L+RL
Sbjct: 705 LRENHAEELERL 716


>gi|117530351|ref|YP_851194.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
 gi|117165963|dbj|BAF36271.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
          Length = 427

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-------ASRLTRTYTNQHGLKD 121
           + +D    K+    RF+  V   T+GV    ++C  +       A+      T  +    
Sbjct: 89  IWLDSSVRKVCFNARFEALVTQATWGVWPDNLYCAMVLFQQIGAATGFKAGRTRGYSYGS 148

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
            ++++L   ++K   SSDWS  +L+  QLQYAA DV
Sbjct: 149 LVRDILDTPLNKELASSDWSG-ELTPAQLQYAALDV 183


>gi|308473681|ref|XP_003099064.1| hypothetical protein CRE_27780 [Caenorhabditis remanei]
 gi|308267718|gb|EFP11671.1| hypothetical protein CRE_27780 [Caenorhabditis remanei]
          Length = 208

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR----LQFTEKLQRLGRSDLA 180
           + + ISK++  S+W    L D+Q+QYAA D + LH +     L ++    R  R D++
Sbjct: 53  IRVPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNINIGTALDWSYSPPRPSRPDIS 110


>gi|308486518|ref|XP_003105456.1| hypothetical protein CRE_21803 [Caenorhabditis remanei]
 gi|308256561|gb|EFP00514.1| hypothetical protein CRE_21803 [Caenorhabditis remanei]
          Length = 371

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           ISK +  S+W    L D+Q+QYAA D + LH L +
Sbjct: 220 ISKTETMSNWCGPQLRDDQIQYAAMDAIVLHNLNI 254


>gi|255327433|ref|ZP_05368506.1| ribonuclease D [Rothia mucilaginosa ATCC 25296]
 gi|255295501|gb|EET74845.1| ribonuclease D [Rothia mucilaginosa ATCC 25296]
          Length = 421

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 93  FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
            G+R   +F T++ +RL      +  L   ++ELLG  ++K     DWS   L +  L Y
Sbjct: 124 LGMRPNRLFDTELGARLA--GLERVNLGAAVEELLGYKLAKKHSKEDWSRRPLPESWLNY 181

Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           A  DV  L  LR    + L++ G+   A     +L
Sbjct: 182 ALLDVDVLIDLRDAMEDLLRQQGKLQYALEEFEYL 216


>gi|308455884|ref|XP_003090432.1| hypothetical protein CRE_12365 [Caenorhabditis remanei]
 gi|308263351|gb|EFP07304.1| hypothetical protein CRE_12365 [Caenorhabditis remanei]
          Length = 308

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
            LK  + +  G+ I K +  S W+  DL  +QL YAA D + LH + ++
Sbjct: 230 SLKKMVDDWAGVKIVKTETMSCWTVPDLRHDQLHYAAMDAIALHYINIR 278


>gi|289610752|emb|CBI60186.1| unnamed protein product [Sordaria macrospora]
          Length = 134

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 28/139 (20%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D +AVDTE +        LC++Q++  +    I  +A G    P L+ +L D +      
Sbjct: 24  DFVAVDTEFMRENSYWPELCLIQIANTEEAAAIDPMAPGIDLTP-LLNLLTDNED----- 77

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
                                  K+A+ +      Q G  + +   LGI + K  + +DW
Sbjct: 78  ---------------------VLKVAA-MALGQGEQVGYSNLVDAYLGITVDKGARFTDW 115

Query: 141 SADDLSDEQLQYAASDVVH 159
           S   L D Q+ YA +D  H
Sbjct: 116 SRRPLDDRQIDYAIADATH 134


>gi|115438991|ref|NP_001043775.1| Os01g0660800 [Oryza sativa Japonica Group]
 gi|55773822|dbj|BAD72360.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|55773961|dbj|BAD72488.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113533306|dbj|BAF05689.1| Os01g0660800 [Oryza sativa Japonica Group]
 gi|125527143|gb|EAY75257.1| hypothetical protein OsI_03144 [Oryza sativa Indica Group]
          Length = 199

 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156
           A RL R   +Q GL+  ++ ++G ++ K Q+   S W A  LS+EQ++YA  D
Sbjct: 133 AQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACID 185


>gi|307103312|gb|EFN51573.1| hypothetical protein CHLNCDRAFT_140064 [Chlorella variabilis]
          Length = 969

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG---LKDNLK 124
           G+  D ++    H   F +A          R     +   R T  Y  + G   L    +
Sbjct: 491 GIASDFRKLARHHPAAFSLARGCLDLSTLWRSCHIEQTGKRSTAGYKKRVGEVSLSVLAQ 550

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +LG  + K+QQ SDW    LS +QL+YAA D    HA  L F
Sbjct: 551 SVLGKPLDKSQQVSDWGRRPLSSQQLEYAALDA---HAAVLIF 590


>gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806]
          Length = 956

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-------- 74
           +A DTET  L PR  +L  +    G     +  I  G +N  NL   +V EK        
Sbjct: 368 VAWDTETTDLNPRVAKLVGIGCCWGKELNAMAYIPIGHQNGDNLNLEIVLEKLRPILASD 427

Query: 75  -REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
              K+F   +FDI V FY  G+ V+  VF T +AS     Y     L  NL++L
Sbjct: 428 NYPKVFQNAKFDIDV-FYHQGITVKGLVFDTMVAS-----YVLHPELTHNLEDL 475


>gi|115948726|ref|XP_001193541.1| PREDICTED: similar to exosome component 10, partial
           [Strongylocentrotus purpuratus]
          Length = 776

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 9/186 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E           C++Q+S    D  VD + + +  +    L     D K  K+FH
Sbjct: 140 IAVDLEHHSYRSYLGFTCLMQISTAEHDYVVDTLELRSELQM---LNDAFTDPKIVKVFH 196

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D   L    G+ V  +F T  ASR        H L   L     +   K  Q +DW
Sbjct: 197 GANMDFDWLQRDLGLYVVNMFDTHQASR--SLGFPHHSLASLLSRYCQVEADKQYQLADW 254

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200
               L +E L YA  D  +L  L +  T K + + R +   +    ++D++    +   N
Sbjct: 255 RIRPLPEEMLHYAREDTHYL--LYIYHTMKNELIKRGNDRRNLLRAVLDQSTRICVQRYN 312

Query: 201 VDIFSH 206
             IF++
Sbjct: 313 KPIFTN 318


>gi|308471995|ref|XP_003098227.1| hypothetical protein CRE_12172 [Caenorhabditis remanei]
 gi|308269378|gb|EFP13331.1| hypothetical protein CRE_12172 [Caenorhabditis remanei]
          Length = 391

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR----LQFTEKLQRLGRSDLA 180
           + ISK++  S+W    L D+Q+QYAA D + LH +     L ++    R  R D++
Sbjct: 238 VPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNINIGTTLDWSYSPPRPSRPDIS 293


>gi|296215361|ref|XP_002807292.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 3'-5' domain-containing
           protein 2-like [Callithrix jacchus]
          Length = 621

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---AGQKNAP-NLVGMLVDEKREKI 78
           + +D E + L  R   L ++Q++   G   +IR+     G K  P  L+ +L D    K+
Sbjct: 105 LGIDCEWVNLEGRASPLSLLQMASPSGLCVLIRLPKLICGGKTLPRTLLDILADGTILKV 164

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT--YTNQHGLKDNLKELLGINISKAQ- 135
                 D + L   +G+ VR     +  +   R    +N   LK   + +L  ++ K+  
Sbjct: 165 GVGCSEDASKLLQDYGLVVRGCLDLRYLAMWQRKNLLSNGLSLKSLAETVLNFSLDKSLV 224

Query: 136 -QSSDWSADDLSDEQLQYAASD-----VVHLHALRLQFT 168
            + S+W A+ L+++Q+ YAA D      + LH L   F+
Sbjct: 225 LRCSNWDAETLTEDQVIYAARDAQISVALFLHLLGYPFS 263


>gi|159480884|ref|XP_001698512.1| hypothetical protein CHLREDRAFT_142979 [Chlamydomonas reinhardtii]
 gi|158282252|gb|EDP08005.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 3780

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 85  DIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHG-LKDNLKELLGINISKAQQSSDWSA 142
           D+  L   FGVRVR     + +A R+        G L+     LLG  + K  Q SDW A
Sbjct: 260 DVKRLERDFGVRVRGAVDVRLVAQRVAPDCLAAGGSLQALTGSLLGRRLDKGPQRSDWGA 319

Query: 143 DDLSDEQLQYAASD 156
             L   Q+ YAA D
Sbjct: 320 GRLDQRQVVYAAHD 333


>gi|222618988|gb|EEE55120.1| hypothetical protein OsJ_02898 [Oryza sativa Japonica Group]
          Length = 174

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASD 156
           A RL R   +Q GL+  ++ ++G ++ K Q+   S W A  LS+EQ++YA  D
Sbjct: 108 AQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACID 160


>gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex]
          Length = 834

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 3/156 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVD E       +   C++Q+S       I  +    +  P L  +  + K  KIFH  
Sbjct: 255 IAVDLEAHSYRSFQGLTCLMQISTSSSDYIIDTLELWDQLQP-LNEVFCNPKIVKIFHGA 313

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A++L      Q  L   L+    +   K  Q +DW  
Sbjct: 314 DMDIQWLQRDFGIYVVNLFDTYHAAKLLGF--AQLSLSFLLRHYCQVIADKQYQLADWRI 371

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L ++ + YA  D  +L  +  +  + L+  G  D
Sbjct: 372 RPLPEQMVNYAREDTHYLGYIYEKMKKDLKMKGTGD 407


>gi|111226700|ref|XP_642107.2| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|90970724|gb|EAL68469.2| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 686

 Score = 37.0 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 5/121 (4%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           ++ ++QLS  + T  +I+++  +K   +L  +L D +  K+      D A +F TF V  
Sbjct: 193 KVALIQLSSKNETF-LIQVSQMEKIPISLEQILTDPRLIKVGVAVSQDAATIFQTFSVVT 251

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAAS 155
           +        +RLT    N  GL      ++ + ++K+ +     W    LS++Q+ YAA+
Sbjct: 252 KGYVDLVPIARLTNYEGN--GLASLALNVMNVTLNKSNKIRCGHWENKKLSNDQIHYAAA 309

Query: 156 D 156
           D
Sbjct: 310 D 310


>gi|300858616|ref|YP_003783599.1| ribonuclease D [Corynebacterium pseudotuberculosis FRC41]
 gi|300686070|gb|ADK28992.1| Ribonuclease D [Corynebacterium pseudotuberculosis FRC41]
 gi|302206328|gb|ADL10670.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis C231]
 gi|302330885|gb|ADL21079.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis 1002]
 gi|308276570|gb|ADO26469.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis I19]
          Length = 401

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+  L    G+R   +F T++A RL      +  L    +E++G+ + K   +
Sbjct: 90  IIHAAPSDLPCL-RELGLRPSNIFDTELAGRLM--GMPRVNLAAMSEEIVGLTLLKGHGA 146

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            DWS   L  + L YAA DV  L  L     E L   G+ + A
Sbjct: 147 EDWSRRPLPIDWLNYAALDVETLLDLADAMAELLDSQGKLEWA 189


>gi|308460450|ref|XP_003092529.1| hypothetical protein CRE_25898 [Caenorhabditis remanei]
 gi|308253105|gb|EFO97057.1| hypothetical protein CRE_25898 [Caenorhabditis remanei]
          Length = 418

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR----LQFTEKLQRLGRSDLA 180
           + ISK++  S+W    L D+Q+QYAA D + LH +     L ++    R  R D++
Sbjct: 265 VPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNINIGTTLDWSYSPPRPSRPDIS 320


>gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis]
 gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis]
          Length = 883

 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FG+ +  +F T  A+R+      +H L   L+    +   K  Q
Sbjct: 359 KVFHGADSDIEWLQKDFGLYIVNMFDTHQAARILNL--GRHSLDHLLRLYCNVESDKRYQ 416

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L +E L+YA  D  +L
Sbjct: 417 LADWRIRPLPEEMLEYARVDTHYL 440


>gi|294865716|ref|XP_002764472.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
 gi|239863939|gb|EEQ97189.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
          Length = 703

 Score = 36.6 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 18/147 (12%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR----- 75
           +A+D E   +   R   C++Q++    D  VD++        AP ++  + D  R     
Sbjct: 565 VAIDLEHHNMQSYRGFTCLIQIATRKKDYIVDVL--------APGIMMKMHDFNRITSDP 616

Query: 76  --EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              K+ H    D+  L       +  +F T  A+R+       + LK+ L    G    K
Sbjct: 617 GIVKVLHGADMDVQWLQRDLSAYLCNMFDTGQAARVLE-LGGGYSLKNLLDFYCGYKADK 675

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHL 160
           A Q +DW    LS+   QYA  DV +L
Sbjct: 676 ANQLADWRQRPLSERMKQYARDDVHYL 702


>gi|182435269|ref|YP_001822988.1| putative ribonuclease D [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178463785|dbj|BAG18305.1| putative ribonuclease D [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 423

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 112 EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLA--GFPRVGLGAMVENVLGYALEKGH 168

Query: 136 QSSDWSADDLSDEQLQYAASDV 157
            + DWS   L +  L+YAA DV
Sbjct: 169 SAVDWSTRPLPEPWLRYAALDV 190


>gi|218512494|ref|ZP_03509334.1| hypothetical protein Retl8_01789 [Rhizobium etli 8C-3]
          Length = 35

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/18 (77%), Positives = 16/18 (88%)

Query: 190 RAELDLLGWENVDIFSHS 207
           RA+LDLLGWE  DIF+HS
Sbjct: 18  RAKLDLLGWEEADIFAHS 35


>gi|220905226|ref|YP_002480538.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219869525|gb|ACL49860.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 214

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
            GL+       G  +SK  Q S+WS  +LS  Q+ YAA+D 
Sbjct: 141 QGLRTLAANFFGWRVSKGSQCSNWSLPELSARQIAYAATDA 181


>gi|328698648|ref|XP_001946371.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           [Acyrthosiphon pisum]
          Length = 522

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 4/145 (2%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           E +A Y+  + +D E +     R  + ++Q++  +G   +IR++  +    +L  +L + 
Sbjct: 51  EKSASYLPILGLDCEWVTQNGIRQPVALLQIADNNGMCSLIRLSKFKTIPSSLSDILSNS 110

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              K+      D  +L   + + V    C  +      +   +  L     +LLG  + K
Sbjct: 111 NIIKVGVAILDDAHLLMNDYNINVSG--CIDLRYLAKESCLEERSLSALAFKLLGCELDK 168

Query: 134 AQ--QSSDWSADDLSDEQLQYAASD 156
               ++SDW A++L+D Q +YAA D
Sbjct: 169 DWHVRASDWEAEELNDRQTEYAALD 193


>gi|326775908|ref|ZP_08235173.1| 3'-5' exonuclease [Streptomyces cf. griseus XylebKG-1]
 gi|326656241|gb|EGE41087.1| 3'-5' exonuclease [Streptomyces cf. griseus XylebKG-1]
          Length = 423

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 112 EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLA--GFPRVGLGAMVENVLGYALEKGH 168

Query: 136 QSSDWSADDLSDEQLQYAASDV 157
            + DWS   L +  L+YAA DV
Sbjct: 169 SAVDWSTRPLPEPWLRYAALDV 190


>gi|255015322|ref|ZP_05287448.1| hypothetical protein B2_15541 [Bacteroides sp. 2_1_7]
          Length = 193

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 5/51 (9%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           + Y  Q G++D +L+++  I     ISK Q+ ++W AD L+D Q +YAA D
Sbjct: 129 QNYVGQFGIEDASLQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALD 179


>gi|150007050|ref|YP_001301793.1| hypothetical protein BDI_0393 [Parabacteroides distasonis ATCC
           8503]
 gi|256840209|ref|ZP_05545717.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262381047|ref|ZP_06074185.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377471|ref|ZP_06987423.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19]
 gi|301311285|ref|ZP_07217213.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3]
 gi|149935474|gb|ABR42171.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256737481|gb|EEU50807.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262296224|gb|EEY84154.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265490|gb|EFI07151.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19]
 gi|300830859|gb|EFK61501.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3]
          Length = 193

 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 5/51 (9%)

Query: 111 RTYTNQHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASD 156
           + Y  Q G++D +L+++  I     ISK Q+ ++W AD L+D Q +YAA D
Sbjct: 129 QNYVGQFGIEDASLQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALD 179


>gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102]
          Length = 831

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 4/203 (1%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T +  +EG +      R    IAVD E          +C++Q+S  D    +  +   + 
Sbjct: 224 TWVDTYEGVLEMLQELRKAKEIAVDLEHHDFRTYTGLVCLMQVSTRDQDWIVDTLQPWRH 283

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +  +    K+FH    D+  L    G+ V  +F T  A  L   Y  +  L  
Sbjct: 284 KLEVLNDVFANPSIVKVFHGAYMDMVWLQRDLGLYVNGLFDTYFACDLL-NYPGK-SLAF 341

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH-LHALRLQFTEKLQRLGRSDLA 180
            L + +G +  K  Q +DW    + +E L YA SD  + L+       E ++   +SD  
Sbjct: 342 LLSKFVGFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLYIFDNVRNELIEASDKSDPE 401

Query: 181 TSCCNFLMDRA-ELDLLGWENVD 202
               N  ++R+ EL L   EN D
Sbjct: 402 KDYINQALERSRELALSRHENPD 424


>gi|40063040|gb|AAR37896.1| ribonuclease D, putative [uncultured marine bacterium 560]
          Length = 358

 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           ++A+DTE   +      LC+VQ++       +D++ I     +   L   L   K E I 
Sbjct: 33  SLAIDTEFKRINTYYPELCLVQIATTQFAECIDVLSI----NDLEPLFEKLYHNKTEWIV 88

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H  R DI  L++        +F T+IA+ L   Y  Q   +   + L  + + K+    D
Sbjct: 89  HSARQDIEALYHLSKRIPVSLFDTQIAASLL-NYPLQISYQALTEILQDVLLDKSYTRFD 147

Query: 140 WSADDLSDEQLQYAASDVVHL 160
           W+   L    ++YA  DV +L
Sbjct: 148 WTTRPLPANVVEYALDDVRYL 168


>gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis]
          Length = 329

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L   FG+ +  VF T  A+R  +    +H L   LK    ++ +K  Q
Sbjct: 147 KVLHGADSDVEWLQRDFGLYLVNVFDTHQAAR--QLSLGRHSLDHLLKLYCNVDANKQYQ 204

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L +E L YA  D  +L
Sbjct: 205 LADWRIRPLPEEMLNYARDDTHYL 228


>gi|317475897|ref|ZP_07935153.1| 3'-5' exonuclease [Bacteroides eggerthii 1_2_48FAA]
 gi|316907930|gb|EFV29628.1| 3'-5' exonuclease [Bacteroides eggerthii 1_2_48FAA]
          Length = 210

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           L G  ISK+Q+ S+W A+ L+  Q QYAA+D        L    +LQ L R+
Sbjct: 147 LFGEKISKSQRLSNWEAEMLTPSQQQYAATDAWAC----LNIYNRLQELKRT 194


>gi|224064982|ref|XP_002301621.1| predicted protein [Populus trichocarpa]
 gi|222843347|gb|EEE80894.1| predicted protein [Populus trichocarpa]
          Length = 228

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 7/140 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
            AVDTE   L        ++Q+S    D  VD I   A       L  +  D    K+FH
Sbjct: 74  FAVDTEQHSLRSFLGFTALIQISTRNEDYLVDTI---ALHDVMGVLAPVFADPTICKVFH 130

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L   F + V  +F T  A  +      Q  L   L+   G+  +K  Q  DW
Sbjct: 131 GADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGVATNKLLQREDW 188

Query: 141 SADDLSDEQLQYAASDVVHL 160
               LS E L+YA +D  +L
Sbjct: 189 RQRPLSAEMLEYAQTDAHYL 208


>gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana]
          Length = 327

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 7/155 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
            AVDTE   L        ++Q+S    D  VD I   A       L  +  D    K+FH
Sbjct: 141 FAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTI---ALHDVMSILRPVFSDPNICKVFH 197

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +K  Q  DW
Sbjct: 198 GADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKLLQREDW 255

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
               LS+E ++YA  D  +L  +    T +L++L 
Sbjct: 256 RQRPLSEEMVRYARXDAHYLLYIADSLTTELKQLA 290


>gi|218129756|ref|ZP_03458560.1| hypothetical protein BACEGG_01335 [Bacteroides eggerthii DSM 20697]
 gi|217987866|gb|EEC54191.1| hypothetical protein BACEGG_01335 [Bacteroides eggerthii DSM 20697]
          Length = 210

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           L G  ISK+Q+ S+W A+ L+  Q QYAA+D        L    +LQ L R+
Sbjct: 147 LFGEKISKSQRLSNWEAEMLTPSQQQYAATDAWAC----LNIYNRLQELKRT 194


>gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 872

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTV--------DIIRIAAGQKNAPNLVGMLVDEK 74
            AVDTE   L        ++Q+S  +           D++ I     + PN+        
Sbjct: 141 FAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNIC------- 193

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+FH    D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +K 
Sbjct: 194 --KVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKL 249

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            Q  DW    LS+E ++YA +D  +L  +    T +L++L 
Sbjct: 250 LQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 290


>gi|227503491|ref|ZP_03933540.1| ribonuclease D [Corynebacterium accolens ATCC 49725]
 gi|227075994|gb|EEI13957.1| ribonuclease D [Corynebacterium accolens ATCC 49725]
          Length = 406

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 13  AECAARY---VDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAP 64
           AE AAR        A+DTE        DR  ++Q+   G GT+    +  R    Q  AP
Sbjct: 23  AEAAARLQAGTGPFAIDTERASGYRYDDRAFLIQIRRRGAGTMLFAPEGHRAELTQALAP 82

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L G      +  I H    D+  L +  G+    +F T++A+R    +    G    + 
Sbjct: 83  VLNG------QHWIIHAAPSDLPSLGW-LGLFPGTLFDTELAARFAGFHRTNLGA--IIA 133

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           EL  + + K     DWS   LS+E   YAA DV
Sbjct: 134 ELFDVQLEKGHGDDDWSIPRLSEEMRAYAALDV 166


>gi|19553105|ref|NP_601107.1| ribonuclease D [Corynebacterium glutamicum ATCC 13032]
 gi|62390740|ref|YP_226142.1| ribonuclease D protein [Corynebacterium glutamicum ATCC 13032]
 gi|41326078|emb|CAF20241.1| PROBABLE RIBONUCLEASE D PROTEIN [Corynebacterium glutamicum ATCC
           13032]
          Length = 403

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 18/185 (9%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAPNLV 67
           A+  A      A+DTE        DR  ++Q+   G GT+    +  R    Q   P L 
Sbjct: 26  ADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVLN 85

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKE 125
           G      +E I H    D+  L +   + + P  +F T++A RL     +   L   +++
Sbjct: 86  G------QEWIIHAASTDLPSLAW---LDLHPGLLFDTELAGRLAGF--DHVNLAAMVEQ 134

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  +++ K   S DWS   L +  L YAA DV  L  L     E L + G+   A     
Sbjct: 135 IFDLHLLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFV 194

Query: 186 FLMDR 190
            ++D+
Sbjct: 195 HIVDQ 199


>gi|160889123|ref|ZP_02070126.1| hypothetical protein BACUNI_01544 [Bacteroides uniformis ATCC 8492]
 gi|270296116|ref|ZP_06202316.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156861130|gb|EDO54561.1| hypothetical protein BACUNI_01544 [Bacteroides uniformis ATCC 8492]
 gi|270273520|gb|EFA19382.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 207

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           L G  ISK+Q+ S+W A+ L++ Q  YAA+D        L    KLQ L R+
Sbjct: 147 LFGEKISKSQRLSNWEAETLTEPQKLYAATDAWAC----LNIYNKLQELKRT 194


>gi|303286635|ref|XP_003062607.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456124|gb|EEH53426.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 720

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----VVHLHALRLQFTEKLQR 173
           GL    + +LG  + K+ + SDWSA  L++ Q  YAA D    V  +  LR +  ++L R
Sbjct: 657 GLSHVARVVLGKPLDKSTRMSDWSARPLTERQRHYAALDAWVLVEVMRVLREEHGDELDR 716

Query: 174 LGRS 177
           L R 
Sbjct: 717 LSRG 720


>gi|118361377|ref|XP_001013917.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89295684|gb|EAR93672.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1490

 Score = 36.2 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
           I AG   + +L  M    K EK F    F DIA+L        R +F          +  
Sbjct: 459 IKAGHSISTDLNEMEKTFKSEKKFDLNNFVDIALL-------NRDIF----------SLA 501

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           N   LK  +++LL + +SK +Q S+W    L   Q+ YAA D      + ++  EKL ++
Sbjct: 502 NTASLKFMVQKLLNLQMSKFEQISNWDRRPLRKSQIHYAAVDAF----IVIKLYEKLVQI 557

Query: 175 GRSDLATSCCNFLMDRAELDL 195
            ++  A +  N   +  + +L
Sbjct: 558 QQAGGALNYVNVYQEEQKDNL 578


>gi|145295805|ref|YP_001138626.1| hypothetical protein cgR_1730 [Corynebacterium glutamicum R]
 gi|140845725|dbj|BAF54724.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 403

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 18/185 (9%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAPNLV 67
           A+  A      A+DTE        DR  ++Q+   G GT+    +  R    Q   P L 
Sbjct: 26  ADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVLN 85

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKE 125
           G      +E I H    D+  L +   + + P  +F T++A RL     +   L   +++
Sbjct: 86  G------QEWIIHAASTDLPSLAW---LDLHPGLLFDTELAGRLAGF--DHVNLAAMVEQ 134

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  +++ K   S DWS   L +  L YAA DV  L  L     E L + G+   A     
Sbjct: 135 IFDLHLLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFV 194

Query: 186 FLMDR 190
            ++D+
Sbjct: 195 HIVDQ 199


>gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum]
          Length = 892

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH   +D+  L   FG+ V  +F T  A  +      ++ L   ++ +  + + K  Q
Sbjct: 346 KVFHGSEYDVQWLQRDFGIYVVGMFDTFCAMHVLNFA--KYSLAHLVQSICNVTLDKELQ 403

Query: 137 SSDWSADDLSDEQLQYAASDVVHL 160
            +DW    L+   ++YA SD  +L
Sbjct: 404 KADWRVRPLTTAHIEYARSDTHYL 427


>gi|254883500|ref|ZP_05256210.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254836293|gb|EET16602.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 216

 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKDN-----LKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           Y  + G+ D         L G  ISK+Q+ S+W AD LS+ Q  YAA+D
Sbjct: 131 YVGRFGIADRSLQKIFANLFGQKISKSQRLSNWEADVLSEGQKLYAATD 179


>gi|319641711|ref|ZP_07996394.1| hypothetical protein HMPREF9011_01992 [Bacteroides sp. 3_1_40A]
 gi|317386685|gb|EFV67581.1| hypothetical protein HMPREF9011_01992 [Bacteroides sp. 3_1_40A]
          Length = 216

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKDN-----LKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           Y  + G+ D         L G  ISK+Q+ S+W AD LS+ Q  YAA+D
Sbjct: 131 YVGRFGIADRSLQKIFANLFGQKISKSQRLSNWEADVLSEGQKLYAATD 179


>gi|90408161|ref|ZP_01216329.1| ribonuclease D [Psychromonas sp. CNPT3]
 gi|90310691|gb|EAS38808.1| ribonuclease D [Psychromonas sp. CNPT3]
          Length = 296

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH----LHALRLQFTEK 170
           G    ++ L G+ + K +  +DW    L+++Q+ YAA DV+H    L  L+ Q  EK
Sbjct: 36  GYAKMVETLQGVIVDKGESRTDWCKRPLTEKQVDYAAIDVLHLKPCLEKLKAQLAEK 92


>gi|21324671|dbj|BAB99294.1| Ribonuclease D [Corynebacterium glutamicum ATCC 13032]
          Length = 421

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 18/185 (9%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTV----DIIRIAAGQKNAPNLV 67
           A+  A      A+DTE        DR  ++Q+   G GT+    +  R    Q   P L 
Sbjct: 44  ADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVLN 103

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKE 125
           G      +E I H    D+  L +   + + P  +F T++A RL     +   L   +++
Sbjct: 104 G------QEWIIHAASTDLPSLAW---LDLHPGLLFDTELAGRLAGF--DHVNLAAMVEQ 152

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  +++ K   S DWS   L +  L YAA DV  L  L     E L + G+   A     
Sbjct: 153 IFDLHLLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFV 212

Query: 186 FLMDR 190
            ++D+
Sbjct: 213 HIVDQ 217


>gi|291514664|emb|CBK63874.1| Ribonuclease D [Alistipes shahii WAL 8301]
          Length = 202

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           +LG  +SKAQ+ S+W A  L+D+Q  YAA+D
Sbjct: 151 VLGRRVSKAQRLSNWEAATLTDKQQLYAATD 181


>gi|240254568|ref|NP_850189.5| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 891

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +K  Q
Sbjct: 194 KVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATNKLLQ 251

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             DW    LS+E ++YA +D  +L  +    T +L++L 
Sbjct: 252 REDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 290


>gi|242001434|ref|XP_002435360.1| 3-5 exonuclease, putative [Ixodes scapularis]
 gi|215498690|gb|EEC08184.1| 3-5 exonuclease, putative [Ixodes scapularis]
          Length = 587

 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 14/153 (9%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------NLVGMLV 71
           R    + +D+E   +   R R+ ++QL+P      ++R+    + A       +L  +L 
Sbjct: 55  REAGVLGLDSEWTTVQGHRHRVALLQLAPNANFSVLLRLCQFTEEASTVTLPESLRDILK 114

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH----GLKDNLKELL 127
           D K  K+      D   LF  +G+ V    C  +   L       H    GL+   + LL
Sbjct: 115 DVKIIKVGVGVIDDAHKLFQDYGIDVWG--CLDLRHALGCLPELGHFPKVGLRSLSESLL 172

Query: 128 GINISKAQQ--SSDWSADDLSDEQLQYAASDVV 158
           G++  K+ +   S+W AD L+++Q++YAA D +
Sbjct: 173 GVSPDKSWRLRCSNWEADVLTEKQIRYAADDAL 205


>gi|6324574|ref|NP_014643.1| Rrp6p [Saccharomyces cerevisiae S288c]
 gi|14195186|sp|Q12149|RRP6_YEAST RecName: Full=Exosome complex exonuclease RRP6; AltName:
           Full=Ribosomal RNA-processing protein 6
 gi|1150996|gb|AAC49480.1| hypothetical protein UNC733 [Saccharomyces cerevisiae]
 gi|1420088|emb|CAA99189.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814890|tpg|DAA10783.1| TPA: Rrp6p [Saccharomyces cerevisiae S288c]
          Length = 733

 Score = 36.2 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 7/151 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E          +C++Q+S    D  VD +++   ++N   L  +  +    K+FH
Sbjct: 235 IAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKL---RENLHILNEVFTNPSIVKVFH 291

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L    G+ V  +F T  AS+       +H L   L+       SK  Q +DW
Sbjct: 292 GAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL--PRHSLAYLLENFANFKTSKKYQLADW 349

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               LS     YA +D   L  +  Q   KL
Sbjct: 350 RIRPLSKPMTAYARADTHFLLNIYDQLRNKL 380


>gi|326498999|dbj|BAK05990.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 212

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS--DWSADDLSDEQLQYAASD 156
           A  + R +  Q GLKD    ++G N+ K ++ +   W A  LS EQ+QYA  D
Sbjct: 133 ADEMRRPWLRQAGLKDVAGVVMGANLHKPRRVTMGPWDACRLSQEQIQYACID 185


>gi|323335702|gb|EGA76985.1| Rrp6p [Saccharomyces cerevisiae Vin13]
          Length = 733

 Score = 36.2 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 7/151 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E          +C++Q+S    D  VD +++   ++N   L  +  +    K+FH
Sbjct: 235 IAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKL---RENLHILNEVFTNPSIVKVFH 291

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L    G+ V  +F T  AS+       +H L   L+       SK  Q +DW
Sbjct: 292 GAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL--PRHSLAYLLENFANFKTSKKYQLADW 349

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               LS     YA +D   L  +  Q   KL
Sbjct: 350 RIRPLSKPMTAYARADTHFLLNIYDQLRNKL 380


>gi|151945630|gb|EDN63871.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 gi|190407342|gb|EDV10609.1| exosome complex exonuclease RRP6 [Saccharomyces cerevisiae RM11-1a]
 gi|207341289|gb|EDZ69386.1| YOR001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256274006|gb|EEU08922.1| Rrp6p [Saccharomyces cerevisiae JAY291]
 gi|259149485|emb|CAY86289.1| Rrp6p [Saccharomyces cerevisiae EC1118]
          Length = 733

 Score = 36.2 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 7/151 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E          +C++Q+S    D  VD +++   ++N   L  +  +    K+FH
Sbjct: 235 IAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKL---RENLHILNEVFTNPSIVKVFH 291

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L    G+ V  +F T  AS+       +H L   L+       SK  Q +DW
Sbjct: 292 GAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL--PRHSLAYLLENFANFKTSKKYQLADW 349

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               LS     YA +D   L  +  Q   KL
Sbjct: 350 RIRPLSKPMTAYARADTHFLLNIYDQLRNKL 380


>gi|51013151|gb|AAT92869.1| YOR001W [Saccharomyces cerevisiae]
          Length = 733

 Score = 36.2 bits (82), Expect = 2.8,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 7/151 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E          +C++Q+S    D  VD +++   ++N   L  +  +    K+FH
Sbjct: 235 IAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKL---RENLHILNEVFTNPSIVKVFH 291

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L    G+ V  +F T  AS+       +H L   L+       SK  Q +DW
Sbjct: 292 GAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL--PRHSLAYLLENFANFKTSKKYQLADW 349

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               LS     YA +D   L  +  Q   KL
Sbjct: 350 RIRPLSKPMTAYARADTHFLLNIYDQLRNKL 380


>gi|217072026|gb|ACJ84373.1| unknown [Medicago truncatula]
          Length = 187

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I  D E + L  R   LCI+QL+  D    +  I  G          L  +   K+ H  
Sbjct: 70  IGFDCEAVDLC-RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDC 128

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + D   L++ FG+++  V  T+IA  L      Q  L D+   L
Sbjct: 129 KRDSEALYFQFGIKLNNVVDTQIAYSLLEEQEGQRRLPDDYISL 172


>gi|301100864|ref|XP_002899521.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262103829|gb|EEY61881.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1101

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%)

Query: 108  RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
            +L R    Q GL   +K+ L + +SK QQ SDW    L+ +Q+ YAA D   L  L+
Sbjct: 1039 KLQRRRRRQKGLSTYIKQALELPLSKLQQKSDWERRPLTTQQVGYAALDAYCLLMLQ 1095


>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
 gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
          Length = 933

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 27/192 (14%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDG--------- 49
           +TT+   E   P    AR     A+DTET GL  ++ RL  + L+  PG           
Sbjct: 335 VTTVEALE---PWLTEARKAGLFAMDTETDGLDAQQCRLVGISLAIAPGKACYIPLDHQT 391

Query: 50  TVD-IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
           T+D  +R  A  + A  L  +L D    KIF  G+FD+AVL       + P+  T + S 
Sbjct: 392 TLDQPVRQPAIAEIAAALNPILADPTVLKIFQNGKFDLAVLRRHQMPVIAPIDDTMLISY 451

Query: 109 LTRTYTNQHGLKDNLKEL-LGINISKAQQSSDWSADDLS------DEQLQYAASDV-VHL 160
                 + HG+ D L  L LG +     Q +    + L       D+   YAA D  V L
Sbjct: 452 AQEAGAHGHGM-DELSVLHLGHSPISYDQVTGTGRNRLPFPQVPIDKATAYAAEDADVTL 510

Query: 161 ---HALRLQFTE 169
              HALR +  E
Sbjct: 511 RLWHALRPRLRE 522


>gi|308472106|ref|XP_003098282.1| hypothetical protein CRE_08446 [Caenorhabditis remanei]
 gi|308269268|gb|EFP13221.1| hypothetical protein CRE_08446 [Caenorhabditis remanei]
          Length = 231

 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           G+ I K +  SDW+   L  +QL YAA D + LH + ++
Sbjct: 77  GVKIFKTETMSDWTVQTLRHDQLHYAAMDAIALHYINIK 115


>gi|260805242|ref|XP_002597496.1| hypothetical protein BRAFLDRAFT_156042 [Branchiostoma floridae]
 gi|229282761|gb|EEN53508.1| hypothetical protein BRAFLDRAFT_156042 [Branchiostoma floridae]
          Length = 505

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 93  FGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQ 149
           +G+ VR  V    +A R     + + GL+   +++LG+ + K++  + S+W A  LS+EQ
Sbjct: 74  YGITVRGCVDLRHLAIRHKSLQSGKLGLQALAEQVLGVKMDKSRTVRCSNWEASKLSEEQ 133

Query: 150 LQYAASDVV 158
           + YAA+D +
Sbjct: 134 ITYAANDAL 142


>gi|193697404|ref|XP_001951643.1| PREDICTED: exosome component 10-like [Acyrthosiphon pisum]
          Length = 739

 Score = 36.2 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 12/170 (7%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           V+ +A+D E       +   C++Q+S    D  +D + +   +     L  +  +    K
Sbjct: 228 VNELAIDLEAHSYRTYQGFTCLMQISTRNADYIIDTLYL---RDKLHVLNEIFTNPAVVK 284

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +FH    DI  L    G+ V  +F T  A+++     ++ GL+  LK    ++  K  Q 
Sbjct: 285 VFHGADSDIPWLQRDLGLYVVNMFDTYQAAKILNF--SRKGLEFLLKHYCNVDADKTFQL 342

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            DW    LS E + YA  D  +L  +     + L       ++T+ CN++
Sbjct: 343 YDWRTRPLSTEAIFYARCDTHYLLYVYDMIKKDLMA-----MSTNQCNYI 387


>gi|221114219|ref|XP_002154256.1| PREDICTED: similar to ZK1098.3 [Hydra magnipapillata]
          Length = 650

 Score = 36.2 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 21/96 (21%)

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           NA NLV +  +E  EKI  Y                 PV  T       ++  N+ GL  
Sbjct: 576 NASNLVDL--NEISEKILKY-----------------PV--TNAYLYPVQSVQNEKGLSL 614

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
            +  LLG ++ K  Q SDW    LS  Q+QYA  +V
Sbjct: 615 LIYRLLGQSLDKTFQVSDWDKRPLSTNQIQYAGLNV 650


>gi|213408214|ref|XP_002174878.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002925|gb|EEB08585.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
           yFS275]
          Length = 782

 Score = 36.2 bits (82), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IAVD E          +C++Q+S    D  VD + +    +   N+V    D K  K+ H
Sbjct: 239 IAVDLEHHDYRSYSGFVCLMQISTRNQDWIVDTLELREELECL-NIV--FTDPKIIKVLH 295

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L   FG+ +  +F T  A++        HGL   LK+       K  Q +DW
Sbjct: 296 GATMDVIWLQRDFGLYLVGLFDTYYATKALGF--EGHGLAFLLKKYCQFEADKRYQMADW 353

Query: 141 SADDLSDEQLQYAASDVVHL----HALRLQFTEKLQR 173
               L  E L+YA SD   L      LR++  E+  R
Sbjct: 354 RIRPLPKEMLKYAQSDTHFLLYVFDCLRVELLEQSSR 390


>gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
 gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
          Length = 1195

 Score = 36.2 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L   FGV +  +F T  ASR+    +    L   LK    I+ +K  Q
Sbjct: 321 KVLHGSDSDIKWLQRDFGVYIVNMFDTGQASRILEYPSAS--LAFLLKFYCAIDANKKYQ 378

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            +DW    L +E ++YA  D  +L  +  +   +L   G  +L
Sbjct: 379 LADWRIRKLPEEMIKYAREDTHYLLYIYDRLRNELISKGNKNL 421


>gi|326496741|dbj|BAJ98397.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326514394|dbj|BAJ96184.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 332

 Score = 36.2 bits (82), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 41/208 (19%)

Query: 9   GDIPAE----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           G +P E     AA+ +  I  D E + L  R   LCI+Q++  D    +  I  G++   
Sbjct: 33  GQLPVEFLEPSAAKKL-VIGFDCEGVDLC-RNGALCIMQIAFPDAVYLVDAIEGGKELVE 90

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL--------------- 109
                L  +   K+ H  + D   L++ FG+++  V  T+IA  L               
Sbjct: 91  ACKPALESDHVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIEEQEGKKRAYDVYI 150

Query: 110 --------TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
                    R     +  K+ ++ LL       Q  + W    LS+  ++ A  DV  L 
Sbjct: 151 SFVSLLADPRYCGMPYPEKEEVRTLL------RQDPNFWKNRPLSEMMIRAATDDVRFLL 204

Query: 162 ALRLQFTEKLQRLG------RSDLATSC 183
            +  +  EKL ++       RS+L   C
Sbjct: 205 NIHEKMMEKLSKVSSWRLAVRSELYCRC 232


>gi|308481970|ref|XP_003103189.1| hypothetical protein CRE_26689 [Caenorhabditis remanei]
 gi|308260294|gb|EFP04247.1| hypothetical protein CRE_26689 [Caenorhabditis remanei]
          Length = 89

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           + ISK +  S+W    L D+++QYAA D V LH + +
Sbjct: 50  VPISKTETMSNWCGPQLRDDKIQYAAMDAVVLHNINI 86


>gi|158291195|ref|XP_312669.4| AGAP002300-PA [Anopheles gambiae str. PEST]
 gi|157018260|gb|EAA07463.4| AGAP002300-PA [Anopheles gambiae str. PEST]
          Length = 969

 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 5/160 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHY 81
           IA+D E       +   C++QLS    T D I  A   ++  +++  +  D K+ K+ H 
Sbjct: 290 IAIDLEHHSYRSYQGFTCLMQLS--TRTKDYIVDALALRDELHVLNEVFTDPKKLKVLHG 347

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              DI  L    G+ +  +F T  A+R+ +   ++ GL+  LK    I+  KA Q +DW 
Sbjct: 348 SVSDIEWLQRDLGLYLVNMFDTGEAARVLQF--SRIGLQFLLKHYCNIDTDKAFQLADWR 405

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
              + +  ++YA  D  +L  +  +   +L   G S L T
Sbjct: 406 IRPIPENFIEYARKDTHYLLYIYDRMRNELLEKGESLLQT 445


>gi|311246922|ref|XP_003122404.1| PREDICTED: probable exonuclease mut-7 homolog [Sus scrofa]
          Length = 547

 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
               GL   ++++LG  + K QQ S+W    L +EQL YAA+D   L
Sbjct: 345 AGPRGLSLLVQQVLGKPLDKTQQLSNWDRRPLGEEQLVYAAADAYCL 391


>gi|316973270|gb|EFV56889.1| putative 3'-5' exonuclease [Trichinella spiralis]
          Length = 535

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 1/119 (0%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           +VQ +   G   ++R++       + V +L + K  K+      D+  L+   G+ VR  
Sbjct: 76  LVQFATAFGVCILVRLSQMNTPTSSFVTVLENSKVMKVGLGIEQDVKRLYLDHGIVVRGK 135

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           F  +    + +   +   L  N  + + + ++K    S+W A +L++ Q+QYA+SD  +
Sbjct: 136 FDVRYLLDVDQRNISLQTLVKNCFDHVLVKLTKVA-CSNWDATELTEAQIQYASSDAQY 193


>gi|145630436|ref|ZP_01786217.1| ribonuclease D [Haemophilus influenzae R3021]
 gi|144984171|gb|EDJ91608.1| ribonuclease D [Haemophilus influenzae R3021]
          Length = 273

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           GL    ++ L I I K    ++W    LSD QLQYAA DV +L  L
Sbjct: 18  GLAKLAQQYLNIEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPL 63


>gi|308802033|ref|XP_003078330.1| 3'-5' exonuclease, putative (ISS) [Ostreococcus tauri]
 gi|116056782|emb|CAL53071.1| 3'-5' exonuclease, putative (ISS) [Ostreococcus tauri]
          Length = 1013

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 16/86 (18%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           GL    +++ G  + K +Q SDW    L++ Q+ YAA+D    H+L L F +        
Sbjct: 517 GLAVLTRQVTGFTLDKKEQCSDWGKRPLTEGQIAYAAADG---HSLCLIFDK-------- 565

Query: 178 DLATSCCNFLMDRAELDLLGWENVDI 203
                C   ++D AE+  +  E +D+
Sbjct: 566 -----CLEMILDEAEIPRVLREVIDL 586


>gi|145536632|ref|XP_001454038.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421782|emb|CAK86641.1| unnamed protein product [Paramecium tetraurelia]
          Length = 529

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 25/150 (16%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
           +R+C++Q+S G        IA    N    +         KIF+ G  D+  L   + + 
Sbjct: 26  NRICLIQISDGKEIYLFDPIAL---NLEQYMREFFKNDAIKIFYSGAQDLKWLKNEYQIV 82

Query: 97  VRPVFCTKIASR---------LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSD 147
           V      K+ ++         L + Y      +++ K L         Q SDW A  L++
Sbjct: 83  VNNYCDLKVLAQKEPDLSLIALWKKYCGVQFEREDKKRL---------QKSDWFARPLTE 133

Query: 148 EQLQYAASDVVHLHALR----LQFTEKLQR 173
           EQL YAA D  +L  LR     Q+TE+ Q+
Sbjct: 134 EQLFYAALDCKYLVVLREILLQQYTEEEQK 163


>gi|303284617|ref|XP_003061599.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456929|gb|EEH54229.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1174

 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           VR V        L+    ++ GL    +  LG  + K+Q +SDWS   L+  QL YAA D
Sbjct: 615 VRDVASALCLQELSGPRGHRPGLSAACEAWLGRGLDKSQTTSDWSRRPLTAAQLAYAAQD 674

Query: 157 V 157
            
Sbjct: 675 A 675


>gi|260802943|ref|XP_002596351.1| hypothetical protein BRAFLDRAFT_215559 [Branchiostoma floridae]
 gi|229281606|gb|EEN52363.1| hypothetical protein BRAFLDRAFT_215559 [Branchiostoma floridae]
          Length = 503

 Score = 35.8 bits (81), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           ++ HGL   +++ LG+ ++K +Q SDW    L   Q+ YA+ D   L  +    T++++ 
Sbjct: 162 SDAHGLSQLVQQCLGLPLAKTEQLSDWERRPLRKAQILYASLDAYCLLEVYDVLTKRVKD 221

Query: 174 LG 175
            G
Sbjct: 222 AG 223


>gi|213964497|ref|ZP_03392697.1| ribonuclease D [Corynebacterium amycolatum SK46]
 gi|213952690|gb|EEB64072.1| ribonuclease D [Corynebacterium amycolatum SK46]
          Length = 433

 Score = 35.8 bits (81), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 70/176 (39%), Gaps = 7/176 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTE        DR  ++Q         +I    G+K A  + G  V+     I H  
Sbjct: 45  LAVDTERASAYRYDDRAFLLQFRRRGAGTFLIDPEDGRK-AMAVFGSSVN-NLTWIIHAA 102

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+  L    G+    V  T++A RL      +  L    + LLG+ ++K     DWS 
Sbjct: 103 HSDLPCL-AALGLYPTKVIDTELAGRLL--GLERVNLAALTERLLGVGLAKGHGREDWST 159

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC--NFLMDRAELDLL 196
             L  + L YAA DV  L  L     + L  L R +     C     ++R  LD L
Sbjct: 160 RPLPADWLDYAALDVELLIELAEVLCQALTELDRLEWLEQECERELAINRKYLDGL 215


>gi|116793719|gb|ABK26855.1| unknown [Picea sitchensis]
          Length = 204

 Score = 35.8 bits (81), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASD 156
           A +L R    Q GLK   KE+LG+ +SK +    S+W+   L   Q+QYA  D
Sbjct: 136 AEKLERRELKQAGLKGLAKEVLGLRLSKPKSISMSNWAWAILQHRQIQYACID 188


>gi|332261664|ref|XP_003279887.1| PREDICTED: probable exonuclease mut-7 homolog [Nomascus leucogenys]
          Length = 1115

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           GL   ++++LG  + K QQ S+W    L +EQL YAA+D 
Sbjct: 812 GLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQLIYAAADA 851


>gi|293334477|ref|NP_001168997.1| hypothetical protein LOC100382828 [Zea mays]
 gi|223974363|gb|ACN31369.1| unknown [Zea mays]
          Length = 98

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           GL    KE+LG  ++K +++S+W    L+  Q +YAA D V L
Sbjct: 15  GLSGLSKEILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVL 57


>gi|167751882|ref|ZP_02424009.1| hypothetical protein ALIPUT_00124 [Alistipes putredinis DSM 17216]
 gi|167660123|gb|EDS04253.1| hypothetical protein ALIPUT_00124 [Alistipes putredinis DSM 17216]
          Length = 203

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           +LG  +SKAQ+ S+W A  L+D+Q  YAA+D
Sbjct: 151 VLGQRVSKAQRLSNWEAAQLTDKQQFYAATD 181


>gi|25028351|ref|NP_738405.1| hypothetical protein CE1795 [Corynebacterium efficiens YS-314]
 gi|23493636|dbj|BAC18605.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 413

 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 10/171 (5%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML- 70
           A+  A      A+DTE        DR  ++Q+   G GT+    +   + + P L   L 
Sbjct: 32  ADVLAGGSGPFAIDTERASGFRYDDRAFLIQIRRRGAGTL----LFDPESHRPELSRSLG 87

Query: 71  -VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
            V   +E I H    D+  L +   +    +F T++A RL         L   ++++  +
Sbjct: 88  PVLNGQEWIIHAAATDLPSLAW-LDLHPGTLFDTELAGRLAGFELVN--LAAMVEQIFDL 144

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           ++ K   + DWS   L +E L YAA DV  L  L     E L   G+ D A
Sbjct: 145 HLLKGHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWA 195


>gi|323144458|ref|ZP_08079061.1| putative ribonuclease D [Succinatimonas hippei YIT 12066]
 gi|322415773|gb|EFY06504.1| putative ribonuclease D [Succinatimonas hippei YIT 12066]
          Length = 384

 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           GL   +KEL+G  + K    +DW    LS+ QL YAA DV +L  +
Sbjct: 130 GLNAYVKELVGAELEKDCTRTDWLYRPLSENQLIYAALDVEYLEEM 175


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 15/126 (11%)

Query: 17  ARYVD------AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-KNAPN---- 65
           AR+VD       +AVDTET GL P   RL  V L+  +G    + +AA   +  P     
Sbjct: 317 ARWVDKALERGVVAVDTETDGLDPLTCRLVGVSLAVDEGRACYVPLAAPDVRPLPADVVR 376

Query: 66  --LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN 122
             L  +L  +K  K+    +FD  VL   +GVR   P F T +A+ L  +   ++ L   
Sbjct: 377 EVLTPLLASQKVSKVGQNLKFDYHVL-RRWGVRPEGPFFDTMVAAWLLESDAGRYNLDRL 435

Query: 123 LKELLG 128
            ++ LG
Sbjct: 436 AEKYLG 441


>gi|307104422|gb|EFN52676.1| hypothetical protein CHLNCDRAFT_54323 [Chlorella variabilis]
          Length = 529

 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 16/170 (9%)

Query: 3   TIRVHEGDIPAECAA--RYV--DAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDI 53
           T+   EG +PA  AA  R +    +A+D E       G  P   R+ ++QL+     V +
Sbjct: 133 TVVAAEGQLPAALAALRRSMQDSCVAIDLEWKPEGWAGGGP--TRVALMQLASATVAVLV 190

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKI-FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
                G +  P+L   L D     I F +   D   +  TFG   R +F   +  +    
Sbjct: 191 RVCRLGFRMPPSLRAFLSDPDLTFIGFSWDSSDEVKMRQTFGEGRRELFPRFLDLQQVGA 250

Query: 113 YTNQHG--LKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVV 158
               HG  L    K +LG  + K ++   S+W A  LS  Q+QY A D V
Sbjct: 251 SLGYHGFGLAALTKRVLGFALPKCRKVTMSNWEARQLSARQVQYGALDAV 300


>gi|259507406|ref|ZP_05750306.1| ribonuclease D [Corynebacterium efficiens YS-314]
 gi|259165031|gb|EEW49585.1| ribonuclease D [Corynebacterium efficiens YS-314]
          Length = 407

 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 10/171 (5%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML- 70
           A+  A      A+DTE        DR  ++Q+   G GT+    +   + + P L   L 
Sbjct: 26  ADVLAGGSGPFAIDTERASGFRYDDRAFLIQIRRRGAGTL----LFDPESHRPELSRSLG 81

Query: 71  -VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
            V   +E I H    D+  L +   +    +F T++A RL         L   ++++  +
Sbjct: 82  PVLNGQEWIIHAAATDLPSLAW-LDLHPGTLFDTELAGRLAGFELVN--LAAMVEQIFDL 138

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           ++ K   + DWS   L +E L YAA DV  L  L     E L   G+ D A
Sbjct: 139 HLLKGHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWA 189


>gi|219118334|ref|XP_002179944.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408997|gb|EEC48930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 700

 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 11/161 (6%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII-RIAAGQ-KNAPNLVGMLVDEKREKIF 79
           A+A D E+          C++QLS   G   +I  +A G  +    L  +  D    K+ 
Sbjct: 257 ALAFDVESYNKSKYTQLTCLLQLSTDHGMAYVIDPLAPGVFEEVGGLAPIFADPDIVKVG 316

Query: 80  H-YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL------LGINIS 132
           H  G  D+  L   FG+ V   F T  A+++       HGL    +        L  ++ 
Sbjct: 317 HSIGGLDVRSLHRDFGIFVINAFDTYEAAKVL--CLESHGLAAVCEHYGMKYTDLYKSLK 374

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              Q+ DW A  L+   +QY   DV  L  LR+     L +
Sbjct: 375 NEYQTCDWRARPLTGPMIQYGRFDVHFLIELRMLMIRDLTK 415


>gi|225447009|ref|XP_002268685.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 936

 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    D+  L   F + V  +F T  A  +      Q  L   L+   G+  +K  Q
Sbjct: 188 KVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGVATNKLLQ 245

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
             DW    LS E L+YA +D    H L       +  L + D   SCC
Sbjct: 246 REDWRQRPLSVEMLEYAQTDA---HYLLYIANCLIAELRQHDSENSCC 290


>gi|312385767|gb|EFR30186.1| hypothetical protein AND_00361 [Anopheles darlingi]
          Length = 526

 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           IA+D E       +   C++QLS    D  VD +   A +     L  +  D ++ K+ H
Sbjct: 231 IAIDLEHHSYRTFQGFTCLMQLSTRKKDYIVDTL---ALRDELHVLNEVFTDPRKLKVLH 287

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               DI  L    G+ +  +F T  A+R+ +   ++ GL+  LK    I   KA Q +DW
Sbjct: 288 GAISDIEWLQRDLGLYLVNMFDTGEAARVLQF--SRIGLQFLLKHYCNIETDKAYQLADW 345

Query: 141 SADDLSDEQLQYAASDVVHL 160
               L    ++YA  D  +L
Sbjct: 346 RMRPLPPAFIEYARKDTHYL 365


>gi|224023974|ref|ZP_03642340.1| hypothetical protein BACCOPRO_00691 [Bacteroides coprophilus DSM
           18228]
 gi|224017196|gb|EEF75208.1| hypothetical protein BACCOPRO_00691 [Bacteroides coprophilus DSM
           18228]
          Length = 204

 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL-QFTEKLQRLG 175
           L G  ISK Q+ S+W A+ L++ Q  YAA+D      +R+ ++ E+L+R G
Sbjct: 149 LFGEKISKTQRLSNWEAETLTEAQQLYAATDA--WACVRIYEYLEELRRTG 197


>gi|28493361|ref|NP_787522.1| ribonuclease D [Tropheryma whipplei str. Twist]
 gi|28476402|gb|AAO44491.1| ribonuclease D [Tropheryma whipplei str. Twist]
          Length = 391

 Score = 35.4 bits (80), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    DI  L    G+ +  +F T+IA RL      +  L    ++ + + + K  
Sbjct: 90  EVVIHAAINDIKSL-KRVGIHITNLFDTEIACRLLNI--PKVNLSYVTEKFINVKLRKEY 146

Query: 136 QSSDWSADDLSDEQLQYAASDVVHL 160
            + +WSA  L+ + L+YA  DV HL
Sbjct: 147 STVNWSARPLNKKYLEYAEGDVKHL 171


>gi|313220222|emb|CBY31081.1| unnamed protein product [Oikopleura dioica]
          Length = 597

 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 118 GLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRL 174
           GL +  +++LG  ++K  +   S+W AD LS+EQ  YAA D V      LQ   KL Q L
Sbjct: 172 GLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAV----CALQILGKLIQEL 227

Query: 175 GRS 177
           G S
Sbjct: 228 GES 230


>gi|242000324|ref|XP_002434805.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215498135|gb|EEC07629.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 492

 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           GL +  + LLG+ ++K +Q SDW    L   Q++YAA D   L    LQ  E+L
Sbjct: 393 GLSELTRTLLGLPLNKDEQCSDWENRPLRSSQMRYAALDAFCL----LQVYEEL 442


>gi|294786964|ref|ZP_06752218.1| HRDC:3-5 exonuclease [Parascardovia denticolens F0305]
 gi|315226603|ref|ZP_07868391.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|294485797|gb|EFG33431.1| HRDC:3-5 exonuclease [Parascardovia denticolens F0305]
 gi|315120735|gb|EFT83867.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 432

 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           ++  G++   +F T+ A+RL      + GL    +  L + ++K   ++DWS   L  + 
Sbjct: 109 YFDLGLKPAGLFDTERAARLLGQV--RFGLAAVTERYLDLTLAKEHSAADWSYRPLDRDM 166

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
             YAA DV  L  L     + L++ G+ D A     +L+++ +
Sbjct: 167 RIYAALDVEVLIELEGLMKKDLKKAGKWDWAQEDFIYLLNKGK 209


>gi|325068901|ref|ZP_08127574.1| ribonuclease D [Actinomyces oris K20]
          Length = 289

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 115 NQH-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            QH GL   ++E LG+ ++K   ++DWS   L    L YAA DV  L  LR     +L+ 
Sbjct: 4   RQHVGLGAVIEETLGLRLAKDHAAADWSTRPLPASWLTYAALDVELLIDLRDALATELEA 63

Query: 174 LGRSDLAT 181
            G+   A 
Sbjct: 64  AGKDQWAA 71


>gi|313234915|emb|CBY24860.1| unnamed protein product [Oikopleura dioica]
          Length = 812

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 118 GLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRL 174
           GL +  +++LG  ++K  +   S+W AD LS+EQ  YAA D V      LQ   KL Q L
Sbjct: 200 GLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAV----CALQILGKLIQEL 255

Query: 175 GRS 177
           G S
Sbjct: 256 GES 258


>gi|224051280|ref|XP_002200511.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 1
           [Taeniopygia guttata]
          Length = 621

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR----IAAGQKNAPNLVGMLVDEKREKI 78
           + +D E + +  + + + ++Q++   G   ++R    +A+GQ     L+ ++ D    K+
Sbjct: 107 LGIDCEWVSVEGKANPVSLLQMASSSGLCILVRLPRLVASGQTLPKTLLDIMADSAVLKV 166

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT--YTNQHGLKDNLKELLGINISKAQ- 135
                 D   L + +G+ V+     +  +   R     N   LK   +++L   + K+  
Sbjct: 167 GVGCWEDACKLLHDYGLAVKGSMDLRYLAMRQRKDLLHNCLSLKSLAEKVLNFPLDKSPH 226

Query: 136 -QSSDWSADDLSDEQLQYAASDV 157
            + S+W A++L+ +Q+ YAA D 
Sbjct: 227 VRCSNWEAEELTQDQVLYAARDA 249


>gi|28572529|ref|NP_789309.1| ribonuclease [Tropheryma whipplei TW08/27]
 gi|28410661|emb|CAD67047.1| putative ribonuclease [Tropheryma whipplei TW08/27]
          Length = 360

 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    DI  L    G+ +  +F T+IA RL      +  L    ++ + + + K  
Sbjct: 59  EVVIHAAINDIKSL-KRVGIHITNLFDTEIACRLLNI--PKVNLSYVTEKFINVKLRKEY 115

Query: 136 QSSDWSADDLSDEQLQYAASDVVHL 160
            + +WSA  L+ + L+YA  DV HL
Sbjct: 116 STVNWSARPLNKKYLEYAEGDVKHL 140


>gi|289743943|gb|ADD20719.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 514

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            +  D E + +   R  + ++QL+  +G   + R+        +L  +L D+   K+   
Sbjct: 81  VLGFDCEWITIGRVRRPVALLQLASPNGFCGLFRLCHMDHIPESLKNLLADKDIIKVGVD 140

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSD 139
              D   L   +G+ V   F  +  + + R      GL+   + LL ++  K      S+
Sbjct: 141 PAGDARKLRADYGIYVASTFDIRYLAVMIRC--KPLGLEKLSRSLLNVDFVKPWYIARSN 198

Query: 140 WSADDLSDEQLQYAASD 156
           W  D L D+Q++YAA D
Sbjct: 199 WEFDKLDDDQVEYAAKD 215


>gi|313216815|emb|CBY38052.1| unnamed protein product [Oikopleura dioica]
          Length = 680

 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 118 GLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRL 174
           GL +  +++LG  ++K  +   S+W AD LS+EQ  YAA D V      LQ   KL Q L
Sbjct: 133 GLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAV----CALQILGKLIQEL 188

Query: 175 GRS 177
           G S
Sbjct: 189 GES 191


>gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera]
          Length = 935

 Score = 35.0 bits (79), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    D+  L   F + V  +F T  A  +      Q  L   L+   G+  +K  Q
Sbjct: 188 KVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGVATNKLLQ 245

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
             DW    LS E L+YA +D    H L       +  L + D   SCC
Sbjct: 246 REDWRQRPLSVEMLEYAQTDA---HYLLYIANCLIAELRQHDSENSCC 290


>gi|297626438|ref|YP_003688201.1| ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922203|emb|CBL56771.1| Ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 445

 Score = 35.0 bits (79), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      +  L   +++  G+++ K  
Sbjct: 116 EWIIHAATQDLPCLV-EIGLYPSRLFDTELAGRLL--GFPRVSLGTMIEQHFGVHLLKEH 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            ++DWS   L  + + YAA DV  L  LR    ++L   G+ + A      L+D
Sbjct: 173 SAADWSRRPLPPDWIAYAALDVELLIELRNLVADELVAAGKKEWADEEFAHLVD 226


>gi|294775292|ref|ZP_06740815.1| 3'-5' exonuclease [Bacteroides vulgatus PC510]
 gi|294450869|gb|EFG19346.1| 3'-5' exonuclease [Bacteroides vulgatus PC510]
          Length = 216

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKDN-----LKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           Y  + G+ D         L G  ISK+Q+ S+W A+ LS+ Q  YAA+D
Sbjct: 131 YVGRFGIADRSLQKIFANLFGQKISKSQRLSNWEAEVLSEGQKLYAATD 179


>gi|255089332|ref|XP_002506588.1| predicted protein [Micromonas sp. RCC299]
 gi|226521860|gb|ACO67846.1| predicted protein [Micromonas sp. RCC299]
          Length = 1038

 Score = 35.0 bits (79), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 91  YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL 150
           +  G R+  V    + +   +    + GL   +  +LG  + K +Q SDW    L+ +Q+
Sbjct: 712 HALGTRIVDVKALALCAFPDKQKLTRVGLATLVASVLGAYVDKTEQCSDWERRPLTTDQV 771

Query: 151 QYAASDVVHLHALRLQF 167
            YAA+D    H L + F
Sbjct: 772 DYAAADA---HVLTVLF 785


>gi|296191265|ref|XP_002743563.1| PREDICTED: probable exonuclease mut-7 homolog [Callithrix jacchus]
          Length = 1009

 Score = 35.0 bits (79), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           GL   ++++LG  + K QQ S+W    L +EQL YAA+D 
Sbjct: 536 GLSLLVQQVLGTTLDKTQQLSNWDRRPLFEEQLIYAAADA 575


>gi|150006113|ref|YP_001300857.1| hypothetical protein BVU_3624 [Bacteroides vulgatus ATCC 8482]
 gi|149934537|gb|ABR41235.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 216

 Score = 35.0 bits (79), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 113 YTNQHGLKDN-----LKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           Y  + G+ D         L G  ISK+Q+ S+W A+ LS+ Q  YAA+D
Sbjct: 131 YVGRFGIADRSLQKIFANLFGQKISKSQRLSNWEAEVLSEGQKLYAATD 179


>gi|159478793|ref|XP_001697485.1| 3'-5' exonuclease [Chlamydomonas reinhardtii]
 gi|158274364|gb|EDP00147.1| 3'-5' exonuclease [Chlamydomonas reinhardtii]
          Length = 253

 Score = 35.0 bits (79), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           W    L+ EQ++YA+ DV++LH L  QF   LQ
Sbjct: 179 WDRRPLTQEQVRYASDDVLYLHHLHAQFKAALQ 211


>gi|311748079|ref|ZP_07721864.1| 3'- 5' exonuclease domain protein [Algoriphagus sp. PR1]
 gi|126574723|gb|EAZ79104.1| 3'- 5' exonuclease domain protein [Algoriphagus sp. PR1]
          Length = 201

 Score = 35.0 bits (79), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 25/31 (80%)

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           +L + ISK++Q S+W A+ L+++Q +YAA+D
Sbjct: 148 VLKMRISKSEQVSNWEAEVLTEKQQRYAATD 178


>gi|313157179|gb|EFR56609.1| 3'-5' exonuclease [Alistipes sp. HGB5]
          Length = 203

 Score = 35.0 bits (79), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 116 QHGLKD-NLKELLGI----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL--RLQFT 168
           + G++D +L++L  I     +SKAQ+ S+W A  L+D+Q  YAA+D     A+  +L  T
Sbjct: 136 EWGIEDKSLRKLSAIVLRQRVSKAQRLSNWEAATLTDKQKLYAATDAWVCTAIYDKLLHT 195

Query: 169 EKLQR 173
            K++R
Sbjct: 196 PKIKR 200


>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
 gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Cupriavidus metallidurans CH34]
          Length = 934

 Score = 35.0 bits (79), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 24/156 (15%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------AGQKNAPNLV--------- 67
           +A+DTET  L P   +L  + LS   G    I +A      AG +N   L          
Sbjct: 354 VAIDTETTSLDPMLAQLVGISLSVEPGAAAYIPVAHRGPDVAGLENHGQLSREYVLERMR 413

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
           G L D  R K+  + ++D  V F   GV +R +   T + S +  +Y N HG+    + L
Sbjct: 414 GWLEDPARPKLGQHLKYDSHV-FANHGVALRGIAHDTMLESYVLASYRN-HGMDSLAERL 471

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASD 156
           L +     ++     A+ +  +Q+      +YAA D
Sbjct: 472 LSLKTITYEEVCGKGANQIGFDQIDLPRATEYAAED 507


>gi|299473101|emb|CBN77494.1| 3\'-5\' exonuclease family protein [Ectocarpus siliculosus]
          Length = 192

 Score = 34.7 bits (78), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 105 IASRLTRTYTNQHGLKDNL------KELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
           + ++LT    N  G+  +L         LG ++SK QQ S W+   L   Q+ YAA D  
Sbjct: 102 LNTKLTGGACNDQGIPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDA- 160

Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            L ALR+ F   L  LG  D+   C  +   R
Sbjct: 161 -LVALRV-FDALLLALGSLDVGELCTTWTPRR 190


>gi|164656377|ref|XP_001729316.1| hypothetical protein MGL_3351 [Malassezia globosa CBS 7966]
 gi|159103207|gb|EDP42102.1| hypothetical protein MGL_3351 [Malassezia globosa CBS 7966]
          Length = 348

 Score = 34.7 bits (78), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 18/157 (11%)

Query: 35  RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94
           R  +  + QL+  +  + +I ++  ++    LV ML D    K     R D++ L   FG
Sbjct: 140 RMGKTAVAQLATAND-IFVIHLSQMKRLPDTLVAMLQDPHILKSGVAVRQDLSKLQRDFG 198

Query: 95  VRVRPVF-CTKIASRLTRTYTNQH----GLKDNLKELLGINISKAQ-QSSDWSADDLSDE 148
           +        ++IA +L     N       L+D     LG +++K   ++S W+   L++E
Sbjct: 199 IETCGALELSRIAWKLDPERWNGRRALISLRDLCAAYLGCDLAKGPTRTSSWTQVPLTNE 258

Query: 149 QLQYAASD-----------VVHLHALRLQFTEKLQRL 174
           Q+ YAASD           ++  HA R   +E  Q+L
Sbjct: 259 QITYAASDAYVSLELAHAMLLDAHAKRPMSSEDAQKL 295


>gi|323345482|ref|ZP_08085705.1| 3'-5' exonuclease domain protein [Prevotella oralis ATCC 33269]
 gi|323093596|gb|EFZ36174.1| 3'-5' exonuclease domain protein [Prevotella oralis ATCC 33269]
          Length = 212

 Score = 34.7 bits (78), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 21/26 (80%)

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASD 156
           ISK QQ ++W AD L+D+Q +YAA+D
Sbjct: 154 ISKRQQLTNWDADVLNDKQKEYAATD 179


>gi|308484057|ref|XP_003104229.1| hypothetical protein CRE_24937 [Caenorhabditis remanei]
 gi|308258198|gb|EFP02151.1| hypothetical protein CRE_24937 [Caenorhabditis remanei]
          Length = 228

 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           +G  ISK++  S+W+A  L ++Q++YA  D + LH + L
Sbjct: 138 IGAPISKSKTMSNWTAWRLREDQIRYAMMDAIVLHYINL 176


>gi|223997400|ref|XP_002288373.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975481|gb|EED93809.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 782

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
           GL    +  LG  + KA+Q SDWSA  LS EQ +Y
Sbjct: 723 GLSRACEHYLGKQLDKAEQCSDWSARPLSTEQREY 757


>gi|149737203|ref|XP_001500310.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 1
           [Equus caballus]
          Length = 625

 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 13/159 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---AGQKNAPN-LVGMLVDEKREKI 78
           + +D E + L  +   L ++Q++   G   ++R+     G K  P  L+ +L D+   K+
Sbjct: 109 LGIDCEWVNLEGKASPLSLLQMASPSGFCVLVRLPKLVCGGKTLPKTLLDILADDTILKV 168

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT--YTNQHGLKDNLKELLGINISKAQ- 135
                 D + L   +G+ V+     +  +   R     N   LK   + +L   + K+  
Sbjct: 169 GVGCSEDASKLLQDYGLVVKGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLL 228

Query: 136 -QSSDWSADDLSDEQLQYAASD-----VVHLHALRLQFT 168
            + S+W A++L+++Q+ YAA D      + LH L   F+
Sbjct: 229 LRCSNWDAENLTEDQVIYAARDAQISVALFLHLLGYPFS 267


>gi|294868076|ref|XP_002765369.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983]
 gi|239865388|gb|EEQ98086.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983]
          Length = 1005

 Score = 34.7 bits (78), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +Q GL + +K  LG  +SK  + S+W    LS  Q++YA+ D + L    L+  EK+Q
Sbjct: 579 HQRGLTEVVKYFLGKPLSKVMRLSNWRRRPLSYRQVEYASLDAIVL----LKCIEKIQ 632


>gi|219126108|ref|XP_002183306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405062|gb|EEC45006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 311

 Score = 34.7 bits (78), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR------TYTNQHGL 119
           L+ +L +    K+ H    DIA L   FG+ +  +F T  A+R  +       Y  QH +
Sbjct: 205 LLPVLTNPDVVKVLHGADSDIAWLQRDFGLYIVNLFDTMRAARALKFPRASYAYVLQHYV 264

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
                   G++  K+ Q +DW    L +   QYA  D  +L
Sbjct: 265 D-------GLHADKSAQLADWRVRPLPEALQQYAIQDTAYL 298


>gi|118099131|ref|XP_415556.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 865

 Score = 34.7 bits (78), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           + GL   ++ +LG  + K +Q S+W    L +EQ+ YAASD   L    L+  EKL
Sbjct: 525 EKGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCL----LEVYEKL 576


>gi|225450638|ref|XP_002278277.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089752|emb|CBI39571.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score = 34.7 bits (78), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD---VVHL 160
           GL    K++LG  ++K +++S+W    LS  QL+YAA D   +VH+
Sbjct: 480 GLSGLAKKVLGAGLNKTRRNSNWEQRPLSQHQLEYAALDAAVLVHI 525


>gi|71024099|ref|XP_762279.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
 gi|46101781|gb|EAK87014.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
          Length = 1027

 Score = 34.7 bits (78), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 5/140 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           V+ IA+D E       +  +C++QLS   GD  +D +     Q +A  L     +  + K
Sbjct: 360 VNEIAIDLEHHSYRTYQGIVCLMQLSTRWGDWIIDTLSDDVRQ-HAELLNSSFTNPDKVK 418

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+ +  +F T  A+ +    +  HGL   +      +  K  Q 
Sbjct: 419 VLHGANHDVLWLQRDLGLYLVNLFDTYHATNVLMFPS--HGLNYLMARYCNFDADKRYQL 476

Query: 138 SDWSADDLSDEQLQYAASDV 157
           +DW    L  E L YA SD 
Sbjct: 477 ADWRIRPLPKEMLYYARSDT 496


>gi|302673415|ref|XP_003026394.1| hypothetical protein SCHCODRAFT_114457 [Schizophyllum commune H4-8]
 gi|300100076|gb|EFI91491.1| hypothetical protein SCHCODRAFT_114457 [Schizophyllum commune H4-8]
          Length = 357

 Score = 34.7 bits (78), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           T+   L D  +  +G+ I K  Q SDW    L++EQ+ YA  D   L
Sbjct: 166 TSHISLDDMARITVGVRIMKEMQRSDWGTSVLTEEQIDYALIDAYML 212


>gi|301781518|ref|XP_002926188.1| PREDICTED: LOW QUALITY PROTEIN: probable exonuclease mut-7 homolog
           [Ailuropoda melanoleuca]
          Length = 849

 Score = 34.7 bits (78), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           GL   ++++LG  + K+QQ S+W    LS+ QL YAA+D   L
Sbjct: 525 GLSLLVQQVLGKPLDKSQQLSNWDRRPLSEGQLVYAAADAYCL 567


>gi|242087595|ref|XP_002439630.1| hypothetical protein SORBIDRAFT_09g017250 [Sorghum bicolor]
 gi|241944915|gb|EES18060.1| hypothetical protein SORBIDRAFT_09g017250 [Sorghum bicolor]
          Length = 562

 Score = 34.3 bits (77), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           GL    KE+LG  ++K++++S+W    L+  Q +YAA D V L
Sbjct: 479 GLSGLSKEILGAGLNKSRRNSNWEQRPLTQNQKEYAALDAVVL 521


>gi|118395219|ref|XP_001029962.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89284244|gb|EAR82299.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1087

 Score = 34.3 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 39   LCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
            +C +QLS    +  +DI+ ++  +  + +L  +    K  K+FH G  D+ +L       
Sbjct: 915  ICTLQLSTLSSNFVIDILNLS--KSVSVHLKSIFESPKFVKVFHGGETDLKLLKKDLNFN 972

Query: 97   VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
            +  +F T  A            L    ++ L  N+ K  Q+SDW    L    L YA  D
Sbjct: 973  LVNIFDTAKAYLKQNKGAGSVSLSSLSQQYLNYNVDKQYQTSDWRIRPLPKPMLNYAMYD 1032

Query: 157  VVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
                  L       + +   S +A SC    + + E
Sbjct: 1033 SFITLILFFVMKSTISQEDLSIIAISCNKMCIKQLE 1068


>gi|326930167|ref|XP_003211223.1| PREDICTED: probable exonuclease mut-7 homolog [Meleagris gallopavo]
          Length = 916

 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           + GL   ++ +LG  + K +Q S+W    L +EQ+ YAASD   L  +  +  +  +  G
Sbjct: 525 EKGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCLLEVYEKLCKDPESFG 584

Query: 176 -RSDLATS 182
             SDL  S
Sbjct: 585 LSSDLTES 592


>gi|222637126|gb|EEE67258.1| hypothetical protein OsJ_24424 [Oryza sativa Japonica Group]
          Length = 949

 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 16/202 (7%)

Query: 8   EGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKN 62
           E D   E  AR +D   A AVDTE   L        ++Q+S    D  +D I   A    
Sbjct: 149 ETDAQLEDLARLLDDEKAFAVDTEQHSLRSFLGYTALMQISTQKADYLIDTI---ALHDV 205

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +  +    KIFH    D+  L   F + V  +F T  A  +      Q  L   
Sbjct: 206 MSILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQKSLAYL 263

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDLA 180
           L+   G+   K  Q  DW    L+ E +QYA  D  +L  +      +L  +    SD  
Sbjct: 264 LELYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAKTYDASDSP 323

Query: 181 TSCCNFLMD---RAELDLLGWE 199
               NF  +   R+ +DL+ W+
Sbjct: 324 NDKINFFFEASHRSNMDLV-WK 344


>gi|313242411|emb|CBY34559.1| unnamed protein product [Oikopleura dioica]
          Length = 420

 Score = 34.3 bits (77), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 3/138 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVD E       +   C+VQ+S       I+   A  ++   L  +  + K  KIFH  
Sbjct: 278 LAVDLEHHRYRSYQGFTCLVQISSRQKDY-ILDPLAVWEDMYKLNEVFANPKIVKIFHGS 336

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+  L   FGV V  +F T  A++  +    +  L   L+    I + K  Q +DW  
Sbjct: 337 RNDMLWLQRDFGVYVVNLFDTFFAAK--KLDLAKKSLDYLLQHYCKIRLDKRFQLADWRM 394

Query: 143 DDLSDEQLQYAASDVVHL 160
             +    L+YA  D  +L
Sbjct: 395 RPIPPNMLRYARQDTHYL 412


>gi|240103869|ref|YP_002960178.1| hypothetical protein TGAM_1812 [Thermococcus gammatolerans EJ3]
 gi|239911423|gb|ACS34314.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 146

 Score = 34.3 bits (77), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 25/38 (65%)

Query: 49 GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI 86
           TVD++ + +G+ + P+LVG+LV     + +++  FDI
Sbjct: 13 ATVDLVSLFSGENSEPHLVGILVARSNRRSYNFSLFDI 50


Searching..................................................done


Results from round 2




>gi|254780636|ref|YP_003065049.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040313|gb|ACT57109.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62]
          Length = 207

 Score =  324 bits (832), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ
Sbjct: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK
Sbjct: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA
Sbjct: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
           TSCCNFLMDRAELDLLGWENVDIFSHS
Sbjct: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207


>gi|90421943|ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90103957|gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 204

 Score =  311 bits (798), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 119/205 (58%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 2   TIRLHRGDLPD--LSRYTDSVAIDTETMGLNPHRDRLCVVQLSNGDGSADVVQIPVGHSD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L+   GV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPAITKIFHFARFDLAALYNALGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E+LG+++SK QQSSDW A  LSD QL YAASDV+HLH LR +    L R GR++LA +
Sbjct: 120 VREVLGVDLSKQQQSSDWGAQSLSDAQLAYAASDVLHLHGLRTRLDAMLAREGRTELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDL GW   DIF+HS
Sbjct: 180 CFDFLPTRAKLDLSGWAEQDIFAHS 204


>gi|91974656|ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
 gi|91681112|gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
          Length = 204

 Score =  308 bits (791), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 118/205 (57%), Positives = 152/205 (74%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY +++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 2   TIRLHRGDLPD--LSRYTNSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGHSD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L+  FGV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPTVVKIFHFARFDLAALYNAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL +++SK QQSSDW A+ LSD QL YAASDV+HLH LR +    L R  R+DLA +
Sbjct: 120 VRELLNVDLSKQQQSSDWGAETLSDAQLAYAASDVLHLHGLREKLDAMLARENRTDLAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ LDL GW   DIF+HS
Sbjct: 180 CFGFLPHRSRLDLDGWSEEDIFAHS 204


>gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
 gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
          Length = 204

 Score =  308 bits (790), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 117/205 (57%), Positives = 152/205 (74%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G   
Sbjct: 2   TIRLHRGDLPD--LSRYTDSVAIDTETMGLNPHRDRLCVVQLSNGDGSADVVQIPLGHTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD++ L    GV  +P++CTKIASRL RTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPAVTKIFHFARFDLSALSNALGVMPQPIYCTKIASRLCRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E+LGI++SK QQSSDW A +L+D QL YAASDV+HLHALR +    L R GR+ +A +
Sbjct: 120 VREVLGIDLSKQQQSSDWGAQNLTDAQLAYAASDVLHLHALRARLDAMLAREGRTAMAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA LDL GW N DIF+HS
Sbjct: 180 CFDFLPTRAMLDLSGWNNEDIFAHS 204


>gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
 gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
          Length = 204

 Score =  306 bits (786), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 123/205 (60%), Positives = 153/205 (74%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY  ++A+DTETLGL P RDRLC+VQLS GDGT D+++I AG  +
Sbjct: 2   TIRLHRGDLPD--LSRYTHSVAIDTETLGLNPHRDRLCVVQLSNGDGTADVVQIPAGHTD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    K+FH+ RFDIAVL + FGV  +P++CTKIAS+L RTYT++HGLKD 
Sbjct: 60  APNLKKLLADPMVTKLFHFARFDIAVLEHAFGVMTQPIYCTKIASKLVRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLG+ ISK QQSSDW A+ LS+ QL YAASDV+HLHALR +    L R  R DLA S
Sbjct: 120 VRELLGVEISKQQQSSDWGAEKLSEAQLTYAASDVLHLHALREKLDTMLARENRMDLAKS 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW+  DIF+HS
Sbjct: 180 CFEFLPTRARLDLQGWDETDIFAHS 204


>gi|316931442|ref|YP_004106424.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
 gi|315599156|gb|ADU41691.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
          Length = 211

 Score =  306 bits (785), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY  ++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 9   TIRLHRGDLPD--LSRYTHSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPLGATD 66

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L+  FGV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 67  APNLKKLLGDPAVVKIFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 126

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLGI++SK QQSSDW A+ LSD QL YAASDV+HLHALR +    L R GR+DLA +
Sbjct: 127 VRELLGIDLSKQQQSSDWGAESLSDAQLAYAASDVLHLHALRDKLDTMLAREGRTDLAAA 186

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW   DIF+HS
Sbjct: 187 CFGFLPVRARLDLDGWSEEDIFAHS 211


>gi|86747785|ref|YP_484281.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
 gi|86570813|gb|ABD05370.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
          Length = 204

 Score =  306 bits (784), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/205 (58%), Positives = 150/205 (73%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P     RY D++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 2   TIRLHRGDLPD--LTRYNDSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGHSD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L    GV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPNILKIFHFARFDLAALSNALGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL +++SK QQSSDW AD LSD QL YAASDV+HLHALR +    L R  R++LA +
Sbjct: 120 VRELLNVDLSKQQQSSDWGADTLSDAQLAYAASDVLHLHALRDKLDAMLARENRTELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW   DIF+HS
Sbjct: 180 CFGFLPHRARLDLGGWSEEDIFAHS 204


>gi|299133324|ref|ZP_07026519.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
 gi|298593461|gb|EFI53661.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
          Length = 204

 Score =  305 bits (783), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/205 (59%), Positives = 152/205 (74%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY  ++A+DTETLGL P RDRLC+VQLS GDG+ D+++I AG  +
Sbjct: 2   TIRLHRGDLPD--LSRYTHSVAIDTETLGLNPHRDRLCVVQLSNGDGSADVVQIPAGHTD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    K+FH+ RFDIAVL++ FGV  +PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPAITKLFHFARFDIAVLYHAFGVMAQPVYCTKIASKLVRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E+LG+ ISK QQSSDW A  LS+ QL YAASDV+HLHALR +    L R  R  LA +
Sbjct: 120 VREMLGVEISKQQQSSDWGAASLSEAQLSYAASDVLHLHALRDKLDAMLAREDREPLAKA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GWE  DIF+HS
Sbjct: 180 CFEFLPTRARLDLQGWEETDIFAHS 204


>gi|315122172|ref|YP_004062661.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495574|gb|ADR52173.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 209

 Score =  305 bits (783), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 166/206 (80%), Positives = 183/206 (88%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MTTIRVH GDIP EC ARY   IAVDTETLGL+PRRDRLC+VQLSPGDGT DIIRIAA Q
Sbjct: 1   MTTIRVHNGDIPTECIARYTGPIAVDTETLGLIPRRDRLCVVQLSPGDGTADIIRIAAEQ 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           KNAPNLV ML +E +EKIFHY RFDIAVLFYTFGVRV+P+FCTKIASRLTRTY ++HGLK
Sbjct: 61  KNAPNLVTMLANETQEKIFHYARFDIAVLFYTFGVRVKPIFCTKIASRLTRTYIDRHGLK 120

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           DNL+ELLG++ISK QQ SDWS DDLS EQLQYAASDVVHLHALR +F  KLQ LGRSD+A
Sbjct: 121 DNLRELLGVDISKKQQLSDWSEDDLSHEQLQYAASDVVHLHALREKFIAKLQSLGRSDVA 180

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
           ++C NFLM RAELDLLGW+N+DIFSH
Sbjct: 181 SACFNFLMSRAELDLLGWDNIDIFSH 206


>gi|92115811|ref|YP_575540.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
 gi|91798705|gb|ABE61080.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
          Length = 206

 Score =  305 bits (783), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 120/205 (58%), Positives = 150/205 (73%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P +   RY  + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ+ 
Sbjct: 2   TIRLHRGDLPDQDLKRYTHSAAIDTETMGLNPHRDRLCVVQMSPGDGSADVIQIAQGQRE 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L   FGV  +PV+CTKIASRL RTYT++HGLKD 
Sbjct: 62  APNLKQLLADPTIVKIFHFARFDLAALSNAFGVMPQPVYCTKIASRLIRTYTDRHGLKDL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL I +SK QQSSDW A  LSD QL YAASDV+HLHALR +    L R  R+ +A +
Sbjct: 122 VRELLNIELSKQQQSSDWGAQTLSDAQLAYAASDVLHLHALRDKLDAMLARENRTGMAQA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDL GW   DIF+H+
Sbjct: 182 CFEFLPTRAKLDLSGWGAEDIFAHA 206


>gi|148251746|ref|YP_001236331.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
 gi|146403919|gb|ABQ32425.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
          Length = 204

 Score =  305 bits (782), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 120/205 (58%), Positives = 155/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+R+H GD+P    +RY  ++A+DTET+GL P RDRLC+VQLSPGDG+ D+++I  G  +
Sbjct: 2   TVRLHRGDLPD--LSRYTSSVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L +    KIFH+ RFD+A LF+TFGV  +PV+CTKIASRL RTYT++HGLKD 
Sbjct: 60  APNLKALLANPAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL +++SK QQSSDW AD+LS+ QL YAASDV+HLHALR +    L R GR  LA +
Sbjct: 120 VRELLNVDLSKQQQSSDWGADNLSEPQLAYAASDVLHLHALREKLDVMLAREGRLGLAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL G+E  DIF+HS
Sbjct: 180 CFAFLPHRATLDLGGFEAEDIFAHS 204


>gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
 gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
          Length = 204

 Score =  305 bits (782), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY +++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 2   TIRLHRGDLPD--LSRYTNSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGATD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L+  FGV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPAVVKIFHFARFDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLGI++SK QQSSDW AD LSD QL YAASDV+HLHALR +    L R  R+DLA +
Sbjct: 120 VRELLGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDKLDTMLARENRTDLAAA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW   DIF+HS
Sbjct: 180 CFGFLPIRARLDLDGWSEEDIFAHS 204


>gi|27375830|ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium japonicum USDA 110]
 gi|27348968|dbj|BAC45984.1| blr0719 [Bradyrhizobium japonicum USDA 110]
          Length = 204

 Score =  304 bits (779), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 117/205 (57%), Positives = 155/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+R+H GD+P    +RY  A+A+DTET+GL P RDRLC+VQLSPGDG+ D+++I  G  +
Sbjct: 2   TVRLHRGDLPD--LSRYTGAVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L +    KIFH+ RFD+AVL+ +FGV   P++CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKALLANPAITKIFHFARFDVAVLYQSFGVMTGPIYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E+L +++SK QQSSDW +D L++ QL YAASDV+HLHALR +    L R GR+ LA +
Sbjct: 120 VREVLNVDLSKQQQSSDWGSDSLTEPQLAYAASDVLHLHALRERLDAMLVREGRTGLAKA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA LDL GW   DIF+HS
Sbjct: 180 CFDFLPTRALLDLQGWAEEDIFAHS 204


>gi|75674370|ref|YP_316791.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
 gi|74419240|gb|ABA03439.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
          Length = 206

 Score =  303 bits (776), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 125/205 (60%), Positives = 155/205 (75%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P +  ARY  + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ++
Sbjct: 2   TIRLHRGDLPHQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQRD 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL+ +L D    KIFH+ RFD+A L+  FGV  RPV+CTKIASRL RTYT++HGLKD 
Sbjct: 62  APNLIKLLKDPAIVKIFHFARFDLAALYNAFGVMPRPVYCTKIASRLIRTYTDRHGLKDL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL I++SK QQSSDW +  LSD QL YAASDV+HLHALR +    L R  RS LA +
Sbjct: 122 VRELLSIDLSKQQQSSDWGSPTLSDAQLAYAASDVLHLHALRDKLEATLAREDRSALAQA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GWE  DIF+HS
Sbjct: 182 CFEFLPSRAMLDLAGWETEDIFAHS 206


>gi|39933126|ref|NP_945402.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
 gi|39652751|emb|CAE25490.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
          Length = 204

 Score =  303 bits (776), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 124/205 (60%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P    +RY  ++A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G  +
Sbjct: 2   TIRLHRGDLPD--LSRYTHSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGATD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L+ TFGV  +PV+CTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNLKKLLGDPAVVKIFHFARFDLAALYKTFGVMPQPVYCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLGI++SK QQSSDW AD LSD QL YAASDV+HLHALR +    L R  R+DLA +
Sbjct: 120 VRELLGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDRLDTMLARENRTDLAAA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW   DIF+HS
Sbjct: 180 CFGFLPVRARLDLDGWSEEDIFAHS 204


>gi|222147114|ref|YP_002548071.1| ribonuclease D [Agrobacterium vitis S4]
 gi|221734104|gb|ACM35067.1| ribonuclease D [Agrobacterium vitis S4]
          Length = 208

 Score =  302 bits (774), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 147/206 (71%), Positives = 173/206 (83%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           +TIR HEGDI +E AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIA GQ+
Sbjct: 3   STIRYHEGDISSEDAARYTRAIAIDTETLGLIPRRDRLCVVQLSPGDGTADVIRIAPGQR 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D  REKIFHYGRFDIAVLF+TFGV   PVFCTKIASRL+RTYT++HGLKD
Sbjct: 63  QAPNLTALLEDPTREKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L +++SKAQQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR D AT
Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLVRDGRMDHAT 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFEFLPTRAKLDLLGWEETDIFAHS 208


>gi|190889732|ref|YP_001976274.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|190695011|gb|ACE89096.1| ribonuclease III protein [Rhizobium etli CIAT 652]
          Length = 208

 Score =  301 bits (773), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 147/206 (71%), Positives = 170/206 (82%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI A  AARY  A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK
Sbjct: 3   ATIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL+RTYT++HGLKD
Sbjct: 63  EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L ++ISK QQSSDW A+ LS  QL+YAASDV++LHALR + T +L R GR D AT
Sbjct: 123 NLKEMLDVDISKTQQSSDWGAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHAT 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFAFLPTRAKLDLLGWEEADIFAHS 208


>gi|222084303|ref|YP_002542832.1| RNAse D protein [Agrobacterium radiobacter K84]
 gi|221721751|gb|ACM24907.1| RNAse D protein [Agrobacterium radiobacter K84]
          Length = 208

 Score =  301 bits (771), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 149/206 (72%), Positives = 170/206 (82%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI A  AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIA+GQ 
Sbjct: 3   ATIRYHEGDISAADAARYTGAIAIDTETLGLIPRRDRLCVVQLSPGDGTADIIRIASGQS 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV ML D  R+KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKD
Sbjct: 63  QAPNLVAMLADTTRQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKELL ++ISKAQQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR + A 
Sbjct: 123 NLKELLEVDISKAQQSSDWAAEKLSPAQLEYAASDVLYLHALRDKLTARLVRDGRMEHAE 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFAFLPTRAKLDLLGWEEADIFAHS 208


>gi|13472866|ref|NP_104433.1| hypothetical protein mll3296 [Mesorhizobium loti MAFF303099]
 gi|14023613|dbj|BAB50219.1| mll3296 [Mesorhizobium loti MAFF303099]
          Length = 206

 Score =  301 bits (771), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 125/207 (60%), Positives = 157/207 (75%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IR H+ D+P   +   V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ
Sbjct: 1   MADIRFHKHDLPD-LSHYNVGAVAIDTETLGLNPHRDRLCLVQISPGDGSADVIQIAPGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K APNLV +L +    K+FH+GRFD+AVL+  FGV   PVFCTKIASRLTRTYT++HGLK
Sbjct: 60  KKAPNLVSLLRNRSVTKLFHFGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D   ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR     +L R GR+  A
Sbjct: 120 DICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLAREGRTKEA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDL+GW+  DIF+HS
Sbjct: 180 DACFRFLPTRAKLDLMGWDEEDIFAHS 206


>gi|150398650|ref|YP_001329117.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
 gi|150030165|gb|ABR62282.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
          Length = 208

 Score =  300 bits (769), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 149/206 (72%), Positives = 170/206 (82%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI    AARY  AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRIAAGQK
Sbjct: 3   NTIRFHEGDISEADAARYRGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRIAAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV ML D  R+KIFH+GRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKD
Sbjct: 63  QAPNLVAMLSDPARQKIFHFGRFDIAVLFHTFGVTASPVFCTKIASRLARTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKELL ++ISK QQSSDW+AD LS  QL+YAASDV+HLHALR + T +L R GR +LA 
Sbjct: 123 NLKELLDVDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLLRDGRMELAE 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFSFLPTRAKLDLLGWEETDIFAHS 208


>gi|254466427|ref|ZP_05079838.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
 gi|206687335|gb|EDZ47817.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
          Length = 204

 Score =  299 bits (768), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 107/203 (52%), Positives = 145/203 (71%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC++Q+S GDG   I+++  GQ  AP
Sbjct: 4   HLYKNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVIQMSGGDGNAHIVQVEKGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML D    K+FH+GRFDIA +++ FG    PV+CTKIASRL RTYT++HGLK+  +
Sbjct: 62  NLCRMLEDPNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELLGI+ISK QQ SDW A++L++ QL YAASDV+HLH LR    ++L R GRS++A +C 
Sbjct: 122 ELLGIDISKQQQMSDWGAEELTEAQLDYAASDVLHLHKLREALDKRLAREGRSEMAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA+LDL GW  +DIF+HS
Sbjct: 182 DFLPMRAKLDLAGWPEIDIFAHS 204


>gi|146337290|ref|YP_001202338.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
 gi|146190096|emb|CAL74088.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
          Length = 204

 Score =  299 bits (767), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 121/205 (59%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+R+H GD+P    +RY  ++A+DTET+GL P RDRLC+VQLSPGDG+ D+++I  G  +
Sbjct: 2   TVRLHRGDLPD--LSRYTSSVAIDTETMGLNPHRDRLCVVQLSPGDGSADVVQIPKGHTD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L +    KIFH+ RFD+A LF+TFGV  +PV+CTKIASRL RTYT++HGLKD 
Sbjct: 60  APNLKTLLGNTAITKIFHFARFDVATLFHTFGVMPQPVYCTKIASRLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL I++SK QQSSDW AD LS+ QL YAASDV+HLHALR +    L R GR  LA +
Sbjct: 120 VRELLNIDLSKQQQSSDWGADSLSEPQLAYAASDVLHLHALREKLDVMLAREGRLALAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL G+E  DIF+HS
Sbjct: 180 CFAFLPHRATLDLGGFEADDIFAHS 204


>gi|195970213|ref|NP_384368.2| hypothetical protein SMc00342 [Sinorhizobium meliloti 1021]
 gi|307306427|ref|ZP_07586171.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C]
 gi|307319314|ref|ZP_07598743.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83]
 gi|187904130|emb|CAC41699.2| Probable ribonuclease D [Sinorhizobium meliloti 1021]
 gi|306895150|gb|EFN25907.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83]
 gi|306902269|gb|EFN32866.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C]
          Length = 208

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 149/206 (72%), Positives = 170/206 (82%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI    AARY  AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRI+AGQK
Sbjct: 3   NTIRFHEGDISETDAARYTGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRISAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV ML D  R+KIFH+GRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKD
Sbjct: 63  QAPNLVSMLADPTRQKIFHFGRFDIAVLFHTFGVTASPVFCTKIASRLARTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKELL I+ISK QQSSDW+AD LS  QL+YAASDV+HLHALR + T +L R GR +LA 
Sbjct: 123 NLKELLDIDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLLRDGRMELAE 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFSFLPTRAKLDLLGWEEADIFAHS 208


>gi|218661189|ref|ZP_03517119.1| ribonuclease III protein [Rhizobium etli IE4771]
          Length = 208

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 148/206 (71%), Positives = 170/206 (82%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI A  AARY  A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK
Sbjct: 3   ATIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKD
Sbjct: 63  EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L I+ISK QQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR D AT
Sbjct: 123 NLKEMLDIDISKTQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHAT 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFEFLPTRAKLDLLGWEEADIFAHS 208


>gi|86355756|ref|YP_467648.1| RNAse D protein [Rhizobium etli CFN 42]
 gi|86279858|gb|ABC88921.1| RNAse D protein [Rhizobium etli CFN 42]
          Length = 208

 Score =  299 bits (766), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 149/206 (72%), Positives = 171/206 (83%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI A  AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK
Sbjct: 3   ATIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKD
Sbjct: 63  AAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTNPVFCTKIASRLCRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L +++SKAQQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR D AT
Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHAT 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFAFLPTRAKLDLLGWEEADIFAHS 208


>gi|85714031|ref|ZP_01045020.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
 gi|85699157|gb|EAQ37025.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
          Length = 206

 Score =  298 bits (765), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 123/205 (60%), Positives = 152/205 (74%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H GD+P +  ARY  + A+DTET+GL P RDRLC+VQ+SPGDG+ D+I+IA GQ +
Sbjct: 2   TIRLHRGDLPDQDLARYTGSAAIDTETMGLKPHRDRLCVVQMSPGDGSADVIQIARGQHD 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFH+ RFD+A L   FGV  RPV+CTKIASRLTRTYT++HGLKD 
Sbjct: 62  APNLKKLLGDPAIVKIFHFARFDLAALHNAFGVMPRPVYCTKIASRLTRTYTDRHGLKDL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E L I++SK QQSSDW +  LSD QL YAASDV+HLHALR +    L R  R+ LA +
Sbjct: 122 VREALSIDLSKQQQSSDWGSLALSDAQLAYAASDVLHLHALRDKLDAMLAREDRTGLAQA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL GW+  DIF+HS
Sbjct: 182 CFEFLPARAMLDLSGWDAEDIFAHS 206


>gi|319781433|ref|YP_004140909.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167321|gb|ADV10859.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 206

 Score =  298 bits (765), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 126/207 (60%), Positives = 157/207 (75%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IR H+ D+P   +   V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ
Sbjct: 1   MADIRFHKNDLPD-LSHYNVGAVAIDTETLGLNPHRDRLCVVQISPGDGSADVIQIAPGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K APNLV +L +    K+FHYGRFD+AVL+  FGV   PVFCTKIASRLTRTYT++HGLK
Sbjct: 60  KKAPNLVSLLRNRGVTKLFHYGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D   ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR     +L R GR+  A
Sbjct: 120 DICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLARDGRTKEA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDL+GW+  DIF+HS
Sbjct: 180 DACFRFLPTRAKLDLMGWDEEDIFAHS 206


>gi|218508865|ref|ZP_03506743.1| ribonuclease III protein [Rhizobium etli Brasil 5]
 gi|327190020|gb|EGE57137.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 208

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 147/206 (71%), Positives = 171/206 (83%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI A  AARY  A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK
Sbjct: 3   ATIRYHEGDISAADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL+RTYT++HGLKD
Sbjct: 63  EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L ++ISK QQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR D AT
Sbjct: 123 NLKEMLDVDISKTQQSSDWAAETLSQAQLEYAASDVLYLHALRDKLTARLIRDGRFDHAT 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFAFLPTRAKLDLLGWEEADIFAHS 208


>gi|209551599|ref|YP_002283516.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537355|gb|ACI57290.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 208

 Score =  298 bits (764), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 149/206 (72%), Positives = 172/206 (83%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI A  AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIA+GQK
Sbjct: 3   ATIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIASGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKD
Sbjct: 63  EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTNPVFCTKIASRLIRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L ++ISKAQQSSDW+A+ LS  QL+YAASDV++LHALR + TE+L R GR D AT
Sbjct: 123 NLKEMLDVDISKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTERLLRDGRFDHAT 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFAFLPTRAKLDLLGWEEADIFAHS 208


>gi|218670593|ref|ZP_03520264.1| ribonuclease III protein [Rhizobium etli GR56]
          Length = 208

 Score =  298 bits (763), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 147/206 (71%), Positives = 169/206 (82%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI    AARY  A+A+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK
Sbjct: 3   ATIRYHEGDISTADAARYTGAVAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKD
Sbjct: 63  EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L I+ISK QQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR D AT
Sbjct: 123 NLKEMLDIDISKTQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRFDHAT 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFEFLPTRAKLDLLGWEEADIFAHS 208


>gi|110677766|ref|YP_680773.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453882|gb|ABG30087.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 248

 Score =  297 bits (762), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 111/205 (54%), Positives = 144/205 (70%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  V++ D+P          +A+D ET+GL P RDRLC+VQLS GDG   +I+IA GQ  
Sbjct: 46  THNVYKNDLPDGLDLG--PMVAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTE 103

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D K  K+FH+GRFDIA +   FG    PV+CTKIASRL RTYT++HGL   
Sbjct: 104 APNLCKLLEDPKVLKLFHFGRFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKL 163

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L+ELL I+ISK QQSSDW A+ L+D Q++YAASDV++LH LR    + L+R GR + A +
Sbjct: 164 LQELLAIDISKQQQSSDWGAETLTDAQIEYAASDVLYLHQLREALNKMLEREGRMETAQA 223

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDL+GW + DIF+HS
Sbjct: 224 CFDFLPMRAKLDLMGWPDTDIFAHS 248


>gi|15890866|ref|NP_356538.1| ribonuclease D [Agrobacterium tumefaciens str. C58]
 gi|15159163|gb|AAK89323.1| ribonuclease D [Agrobacterium tumefaciens str. C58]
          Length = 208

 Score =  297 bits (762), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 148/206 (71%), Positives = 171/206 (83%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI AE AARY  AIA+DTETLGL+PRRDRLC+VQLS GDGT D+IRIAAGQK
Sbjct: 3   ATIRYHEGDISAEDAARYKGAIAIDTETLGLVPRRDRLCVVQLSSGDGTADVIRIAAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV ML D  R+KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKD
Sbjct: 63  QAPNLVHMLADPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLCRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L ++ISKAQQSSDW+A+ LS  QL+YAASDV++LHALR + T +L R GR + A 
Sbjct: 123 NLKEMLEVDISKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLIRDGRIEHAD 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGW+  DIF+HS
Sbjct: 183 ACFAFLPTRAKLDLLGWDETDIFAHS 208


>gi|86136835|ref|ZP_01055413.1| exonuclease, putative [Roseobacter sp. MED193]
 gi|85826159|gb|EAQ46356.1| exonuclease, putative [Roseobacter sp. MED193]
          Length = 204

 Score =  297 bits (762), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 105/203 (51%), Positives = 145/203 (71%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P +        +A+D ET+GL P RDRLC++QLS GDG   I+++A GQ  AP
Sbjct: 4   HLYQNDLPDDLKLG--PVVAIDCETMGLNPHRDRLCVIQLSDGDGNAHIVQVAKGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML D +  K+FH+GRFDIA +++ FG    PV+CTKIASRL RTYT++HGLK+  +
Sbjct: 62  NLCAMLEDPETLKLFHFGRFDIAAMYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLTQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           EL+G++ISK QQ SDW A  L++ QL YAASDV++LH LR    ++L+R GR ++A +C 
Sbjct: 122 ELIGVDISKQQQMSDWGAKVLTEAQLDYAASDVLYLHRLREALNKRLEREGRMEMAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA+LDL GW   DIF+HS
Sbjct: 182 DFLPMRAKLDLAGWPETDIFAHS 204


>gi|84500657|ref|ZP_00998906.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
 gi|84391610|gb|EAQ03942.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
          Length = 204

 Score =  297 bits (761), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 110/205 (53%), Positives = 148/205 (72%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  +++ D+P          +A+D ET+GL P RDRLC+VQ+S GDG   I+++A GQ +
Sbjct: 2   TNHLYKQDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQMSGGDGDAHIVQVAIGQDS 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D K  K+FH+GRFDIA ++  FG    PV+CTKIASRL RTYT++HGLK+ 
Sbjct: 60  APNLCAMLTDPKVLKLFHFGRFDIAAMYNAFGALAAPVYCTKIASRLVRTYTDRHGLKNL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLGI++SK QQSSDW A++LS  QL+YAASDV++LH LR +   +L R GR+++A +
Sbjct: 120 TQELLGIDLSKQQQSSDWGAEELSAAQLEYAASDVLYLHRLREELDARLAREGRTEIAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA LDL+GW   DIF+HS
Sbjct: 180 CFDFLPVRARLDLMGWPETDIFAHS 204


>gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 206

 Score =  296 bits (760), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 127/207 (61%), Positives = 159/207 (76%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT IRVH+GD+P      +VDAIAVDTETLGL P RDRLC+VQLS GDGT DII+IA GQ
Sbjct: 1   MTEIRVHQGDLP-NLDNYHVDAIAVDTETLGLQPYRDRLCVVQLSSGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNLV +L D+   KIFH+GRFD+A+L +TFG+    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  NSAPNLVKLLEDKAITKIFHFGRFDLAILAHTFGIMPDVVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+ + LS  Q++YAASDV++LH L+  F  +L+R  R ++A
Sbjct: 120 EICSELLNVNISKQQQSSDWATETLSRAQIEYAASDVLYLHRLKSVFETRLKREERENVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDLLGW   DIF+HS
Sbjct: 180 KACFQFLPMRAKLDLLGWTETDIFAHS 206


>gi|260431736|ref|ZP_05785707.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415564|gb|EEX08823.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
          Length = 204

 Score =  296 bits (760), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 105/203 (51%), Positives = 143/203 (70%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC++Q+S GDG   I+++  GQ  AP
Sbjct: 4   HLYKNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVIQMSGGDGHSHIVQVEKGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML + +  K+FH+GRFDIA L++ FG    PV+CTKIASRL RTYT++HGLK+  +
Sbjct: 62  NLCAMLENPEVLKLFHFGRFDIAALYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLCQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELLGI+ISK QQ SDW A+ L++ QL YAASDV++LH LR     +L+R GR+++A +C 
Sbjct: 122 ELLGIDISKQQQMSDWGAETLTEAQLDYAASDVLYLHQLRAALDARLEREGRTEMAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA LDL GW   DIF+HS
Sbjct: 182 DFLPMRARLDLAGWPETDIFAHS 204


>gi|254510165|ref|ZP_05122232.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11]
 gi|221533876|gb|EEE36864.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11]
          Length = 204

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 105/203 (51%), Positives = 143/203 (70%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC++Q+S GDG   I+++  GQ +AP
Sbjct: 4   HLYKNDLPDGLDMG--PIVAIDCETMGLNPHRDRLCVIQMSGGDGDCHIVQVEKGQASAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML D    K+FH+GRFDIA +++ FG    PV+CTKIASRL RTYT++HGLK+  +
Sbjct: 62  NLCAMLEDPNILKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLCQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELLG++ISK QQ SDW A+ L+D QL YAASDV++LH LR     +L R GR+++A +C 
Sbjct: 122 ELLGVDISKQQQMSDWGAETLTDAQLDYAASDVLYLHRLREALDGRLAREGRTEVAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA+LDL GW   DIF+HS
Sbjct: 182 DFLPTRAKLDLAGWPETDIFAHS 204


>gi|254505241|ref|ZP_05117392.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
 gi|222441312|gb|EEE47991.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
          Length = 223

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/205 (58%), Positives = 154/205 (75%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+GD+P   A     A+AVD+ETLGL P RDRLC+VQLSPGDG+ D+++IA GQ  
Sbjct: 19  TIRYHKGDLPDLSAYETASAVAVDSETLGLNPHRDRLCVVQLSPGDGSADVVQIARGQTE 78

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +  D  + KIFH+ RFD+AVL +  G+ V PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 79  APNLAALFTDAAKPKIFHFARFDVAVLRHYLGIHVTPVWCTKIASKLVRTYTDRHGLKDI 138

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG+ +SK QQSSDW+A+ LSD QL YAASDV+HLH L+ +    L+R  R+++A +
Sbjct: 139 TRELLGVELSKQQQSSDWAAETLSDAQLAYAASDVLHLHDLKAKLEMMLEREERTNIAEA 198

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RAELDL GWE  DIF+HS
Sbjct: 199 CFSFLPVRAELDLKGWEENDIFAHS 223


>gi|296446798|ref|ZP_06888736.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
 gi|296255673|gb|EFH02762.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
          Length = 204

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 122/204 (59%), Positives = 149/204 (73%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H+GD+P          +A+DTETLGL P RDRLC+VQLS G+G  D++RIA GQ  
Sbjct: 2   TIRLHQGDLPDGADLG--PVVAIDTETLGLNPHRDRLCLVQLSGGNGDADLVRIAPGQTR 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L +    K+FH+GRFDIAV+  TFGV   PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  APNLEALLANPNVLKLFHFGRFDIAVMAKTFGVMAEPVYCTKIASKLIRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLG+ ISK QQSSDW AD LSD QL YAASDV++LHALR +    L R  R+DLA +
Sbjct: 120 VRELLGVEISKQQQSSDWGADTLSDAQLSYAASDVLYLHALREKLDVMLAREHRTDLAAA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL  RA LDL GW  +DIFSH
Sbjct: 180 CFAFLPMRARLDLAGWPEIDIFSH 203


>gi|126738420|ref|ZP_01754125.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
 gi|126720219|gb|EBA16925.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
          Length = 204

 Score =  296 bits (759), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 108/203 (53%), Positives = 146/203 (71%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P +        +A+D ET+GL P RDRLC++Q+S GDG   II++A GQ  AP
Sbjct: 4   HLYQNDLPDDLKLG--PVVAIDCETMGLNPHRDRLCVIQMSDGDGNAHIIQVAKGQSEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  +L D +  K+FH+GRFDIA ++  FG    PV+CTKIASRL RTYT++HGLK+  +
Sbjct: 62  NLCRLLEDPETLKLFHFGRFDIAAMYNAFGALSAPVYCTKIASRLVRTYTDRHGLKNLTQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELLGI+ISK QQ SDW A+ L+D QL YAASDV+HLH LR    ++L+R GR+++A +C 
Sbjct: 122 ELLGIDISKQQQMSDWGAEILTDAQLDYAASDVLHLHKLRKALNKRLEREGRTEMAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA+LDL GW   DIF+HS
Sbjct: 182 DFLPMRAKLDLAGWPETDIFAHS 204


>gi|56695010|ref|YP_165357.1| exonuclease, putative [Ruegeria pomeroyi DSS-3]
 gi|56676747|gb|AAV93413.1| exonuclease, putative [Ruegeria pomeroyi DSS-3]
          Length = 204

 Score =  296 bits (758), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 108/203 (53%), Positives = 143/203 (70%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC++Q+S GDG   I+++  GQ  AP
Sbjct: 4   HLYKNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVIQMSGGDGNTHIVQVEKGQTAAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML + +  K+FH+GRFDIA L++ FG    PV+CTKIASRL RTYT++HGLK+  +
Sbjct: 62  NLCAMLENPEVLKLFHFGRFDIAALYHAFGALTAPVYCTKIASRLVRTYTDRHGLKNLCQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELLG++ISK QQ SDW A+ LS+ QL YAASDV++LH LR     +L R GR+DLA SC 
Sbjct: 122 ELLGVDISKQQQMSDWGAETLSEAQLDYAASDVLYLHRLREALDGRLAREGRADLAQSCF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA LDL+GW   DIF+HS
Sbjct: 182 DFLPTRARLDLVGWPETDIFAHS 204


>gi|17988111|ref|NP_540745.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
 gi|62289101|ref|YP_220894.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699039|ref|YP_413613.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148559185|ref|YP_001258158.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189023376|ref|YP_001934144.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225626663|ref|ZP_03784702.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225851660|ref|YP_002731893.1| hypothetical protein BMEA_A0127 [Brucella melitensis ATCC 23457]
 gi|237814593|ref|ZP_04593591.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|254690430|ref|ZP_05153684.1| hypothetical protein Babob68_09714 [Brucella abortus bv. 6 str.
           870]
 gi|254694918|ref|ZP_05156746.1| hypothetical protein Babob3T_09702 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696124|ref|ZP_05157952.1| hypothetical protein Babob28_00020 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700933|ref|ZP_05162761.1| hypothetical protein Bsuib55_08749 [Brucella suis bv. 5 str. 513]
 gi|254707182|ref|ZP_05169010.1| hypothetical protein BpinM_09468 [Brucella pinnipedialis
           M163/99/10]
 gi|254709273|ref|ZP_05171084.1| hypothetical protein BpinB_03206 [Brucella pinnipedialis B2/94]
 gi|254713304|ref|ZP_05175115.1| hypothetical protein BcetM6_08117 [Brucella ceti M644/93/1]
 gi|254716342|ref|ZP_05178153.1| hypothetical protein BcetM_07890 [Brucella ceti M13/05/1]
 gi|254731461|ref|ZP_05190039.1| hypothetical protein Babob42_09744 [Brucella abortus bv. 4 str.
           292]
 gi|256030796|ref|ZP_05444410.1| hypothetical protein BpinM2_09123 [Brucella pinnipedialis
           M292/94/1]
 gi|256045912|ref|ZP_05448786.1| hypothetical protein Bmelb1R_15494 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060264|ref|ZP_05450439.1| hypothetical protein Bneo5_07870 [Brucella neotomae 5K33]
 gi|256112626|ref|ZP_05453547.1| hypothetical protein Bmelb3E_08085 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256158817|ref|ZP_05456678.1| hypothetical protein BcetM4_08038 [Brucella ceti M490/95/1]
 gi|256254202|ref|ZP_05459738.1| hypothetical protein BcetB_07895 [Brucella ceti B1/94]
 gi|256258682|ref|ZP_05464218.1| hypothetical protein Babob9C_15316 [Brucella abortus bv. 9 str.
           C68]
 gi|256264829|ref|ZP_05467361.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|256368584|ref|YP_003106090.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260169700|ref|ZP_05756511.1| 3'-5' exonuclease family protein [Brucella sp. F5/99]
 gi|260546398|ref|ZP_05822138.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260563197|ref|ZP_05833683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260755977|ref|ZP_05868325.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260759201|ref|ZP_05871549.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260760489|ref|ZP_05872835.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884998|ref|ZP_05896612.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|261215252|ref|ZP_05929533.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|261218123|ref|ZP_05932404.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261221350|ref|ZP_05935631.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|261314663|ref|ZP_05953860.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261316779|ref|ZP_05955976.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261321030|ref|ZP_05960227.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261324237|ref|ZP_05963434.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261751448|ref|ZP_05995157.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|261759236|ref|ZP_06002945.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|265987850|ref|ZP_06100407.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|265992324|ref|ZP_06104881.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994066|ref|ZP_06106623.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|265997310|ref|ZP_06109867.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|294851524|ref|ZP_06792197.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297247517|ref|ZP_06931235.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306842591|ref|ZP_07475240.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|17983864|gb|AAL53009.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
 gi|62195233|gb|AAX73533.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615140|emb|CAJ10073.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148370442|gb|ABQ60421.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189018948|gb|ACD71670.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225618320|gb|EEH15363.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225640025|gb|ACN99938.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237789430|gb|EEP63640.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|255998742|gb|ACU47141.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260096505|gb|EEW80381.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260153213|gb|EEW88305.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260669519|gb|EEX56459.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260670924|gb|EEX57745.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676085|gb|EEX62906.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260874526|gb|EEX81595.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|260916859|gb|EEX83720.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|260919934|gb|EEX86587.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|260923212|gb|EEX89780.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261293720|gb|EEX97216.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261296002|gb|EEX99498.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261300217|gb|EEY03714.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261303689|gb|EEY07186.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261739220|gb|EEY27216.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|261741201|gb|EEY29127.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|262551778|gb|EEZ07768.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|262765047|gb|EEZ10968.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|263003390|gb|EEZ15683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095285|gb|EEZ18912.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|264660047|gb|EEZ30308.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|294820113|gb|EFG37112.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297174686|gb|EFH34033.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306287236|gb|EFM58724.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|326408140|gb|ADZ65205.1| 3'-5' exonuclease [Brucella melitensis M28]
 gi|326537851|gb|ADZ86066.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 205

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H  D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL + FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205


>gi|260460457|ref|ZP_05808708.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
 gi|259033562|gb|EEW34822.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
          Length = 206

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 126/207 (60%), Positives = 156/207 (75%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IR H+ D+P       V A+A+DTETLGL P RDRLC+VQ+SPGDG+ D+I+IA GQ
Sbjct: 1   MADIRFHKHDLPD-LTHYNVGAVAIDTETLGLNPHRDRLCVVQISPGDGSADVIQIAPGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K APNLV +L +    K+FHYGRFD+AVL+  FGV   PVFCTKIASRLTRTYT++HGLK
Sbjct: 60  KKAPNLVSLLRNRGITKLFHYGRFDLAVLYNAFGVMPEPVFCTKIASRLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D   ELLG+ +SKAQQSSDW+A+ LS EQL+YAASDV++LH LR   + +L R GR+  A
Sbjct: 120 DICFELLGVGLSKAQQSSDWAAEILSPEQLEYAASDVLYLHRLRDVLSGRLARDGRTKEA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDL+GW   DIF+HS
Sbjct: 180 DACFRFLPTRAKLDLMGWGEEDIFAHS 206


>gi|306844394|ref|ZP_07476984.1| 3'-5' exonuclease [Brucella sp. BO1]
 gi|306275207|gb|EFM56957.1| 3'-5' exonuclease [Brucella sp. BO1]
          Length = 205

 Score =  295 bits (756), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H  D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIDAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL + FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205


>gi|254476761|ref|ZP_05090147.1| 3'-5' exonuclease [Ruegeria sp. R11]
 gi|214031004|gb|EEB71839.1| 3'-5' exonuclease [Ruegeria sp. R11]
          Length = 204

 Score =  295 bits (756), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 107/203 (52%), Positives = 143/203 (70%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC++Q+S GDG   I+++A GQ  AP
Sbjct: 4   HLYQNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVIQMSGGDGNAHIVQVAKGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML D    K+FH+GRFDIA +++ FG    PV+CTKIASRL RTYT++HGLK+  +
Sbjct: 62  NLCRMLEDPNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           EL+G++ISK QQ SDW A  LSD QL YAASDV+HLH LR    ++L R GR+++A +C 
Sbjct: 122 ELIGVDISKQQQMSDWGAAQLSDAQLDYAASDVLHLHRLRAALDKRLDREGRTEMAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA+LDL GW   DIF+HS
Sbjct: 182 DFLPMRAKLDLAGWPETDIFAHS 204


>gi|239830972|ref|ZP_04679301.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823239|gb|EEQ94807.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 205

 Score =  295 bits (756), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/205 (60%), Positives = 157/205 (76%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+ D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHKNDLP-NLDHYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL +TFG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAHTFGTMPQPVFCTKIASKLTRTYTDRHGLKEL 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CNELLDVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRLERDGRAKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWPEDDIFAHS 205


>gi|153007480|ref|YP_001368695.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
 gi|151559368|gb|ABS12866.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
          Length = 205

 Score =  295 bits (756), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+ D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHKNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL   FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAQAFGTMPQPVFCTKIASKLTRTYTDRHGLKEL 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CNELLDVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRLERDGRAKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWPEDDIFAHS 205


>gi|163733026|ref|ZP_02140470.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
 gi|161393561|gb|EDQ17886.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
          Length = 204

 Score =  294 bits (755), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 111/205 (54%), Positives = 141/205 (68%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +V++ D+P          +A+D ET+GL P RDRLC+VQLS GDG   +I+IA GQ  
Sbjct: 2   THKVYKNDLPDGLDLG--PMVAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    K+FH+GRFDIA +   FG    PV+CTKIASRL RTYT++HGL   
Sbjct: 60  APNLCKLLEDPNVLKLFHFGRFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L+ELL I+ISK QQSSDW AD L+D Q+ YAASDV++LH LR      L R GR + A +
Sbjct: 120 LQELLNIDISKQQQSSDWGADTLTDAQIDYAASDVLYLHQLREALNTMLTREGRMETAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDL+GW + DIF+HS
Sbjct: 180 CFDFLPMRAKLDLMGWPDTDIFAHS 204


>gi|163842395|ref|YP_001626799.1| hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
 gi|163673118|gb|ABY37229.1| Hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
          Length = 205

 Score =  294 bits (755), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 122/205 (59%), Positives = 154/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H  D+P       V A+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHRNDLP-NLDNYQVAAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL + FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205


>gi|255262197|ref|ZP_05341539.1| 3'-5' exonuclease [Thalassiobium sp. R2A62]
 gi|255104532|gb|EET47206.1| 3'-5' exonuclease [Thalassiobium sp. R2A62]
          Length = 203

 Score =  294 bits (755), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 101/202 (50%), Positives = 141/202 (69%), Gaps = 2/202 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC++Q+S GD    II+++ GQ  AP
Sbjct: 4   HLYQNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVIQMSGGDSNAHIIQVSKGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML +    K+FH+GRFDIA +   FG    PV+CTKIAS++ RTYT++HGLK+ L+
Sbjct: 62  NLTAMLTNPDVLKLFHFGRFDIAAMQNAFGAVTAPVYCTKIASKMVRTYTDRHGLKNLLQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           EL+G++ISK QQSSDW +  L++ QL YAASDV++LH LR +   +L R GR ++A +C 
Sbjct: 122 ELIGVDISKQQQSSDWGSQTLTNAQLDYAASDVLYLHKLRTELNARLVREGRMEMAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSH 206
           +FL  RA+LDL GW  +DIFSH
Sbjct: 182 DFLPMRAQLDLEGWPEIDIFSH 203


>gi|241207041|ref|YP_002978137.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860931|gb|ACS58598.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 208

 Score =  294 bits (754), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 149/206 (72%), Positives = 171/206 (83%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI A  AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK
Sbjct: 3   ATIRYHEGDISAADAARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            A NLV +L D   +KIFHYGRFDIAVLF+TFGV   PVFCTKIASRL RTYT++HGLKD
Sbjct: 63  EARNLVALLEDPTHQKIFHYGRFDIAVLFHTFGVTATPVFCTKIASRLIRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L +++SKAQQSSDW+A+ LS  QL+YAASDV++LHALR + TE+L R GR D AT
Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIRDGRYDHAT 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFEFLPTRAKLDLLGWEEADIFAHS 208


>gi|118589455|ref|ZP_01546861.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
 gi|118438155|gb|EAV44790.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
          Length = 206

 Score =  294 bits (754), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 121/205 (59%), Positives = 156/205 (76%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+GD+P   A    +A+AVD+ETLGL P RDRLC+VQLSPGDG+ D+++IA GQ  
Sbjct: 2   TIRYHKGDLPDLKAYETANAVAVDSETLGLNPHRDRLCVVQLSPGDGSADVVQIARGQSE 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ++ D  + KIFH+ RFD+AVL +   +RV PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 62  APNLAALMTDTSKPKIFHFARFDVAVLQHYLNIRVSPVWCTKIASKLVRTYTDRHGLKDI 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG+ +SK QQSSDW+A+ LSD QL YAASDV+HLHAL+ +    L+R  R+ +A +
Sbjct: 122 TRELLGVELSKQQQSSDWAAETLSDAQLAYAASDVLHLHALKERLEMMLEREERTHIAEA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RAELDL GWE  DIF+HS
Sbjct: 182 CFDFLPTRAELDLKGWEENDIFAHS 206


>gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
 gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
          Length = 207

 Score =  294 bits (753), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 114/206 (55%), Positives = 144/206 (69%), Gaps = 2/206 (0%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            T+R+H GD+PA   A    A+A+DTETLGL P RDRLC+VQLS GDGT D+++I     
Sbjct: 4   PTVRLHRGDLPASYDAGR--AVAIDTETLGLNPHRDRLCVVQLSTGDGTADVVQIPQAGP 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +L D    KIFH+ RFD+AVL+   GV   PV+CTKIAS+L RTYT++HGLKD
Sbjct: 62  EPVVLKRVLADPGILKIFHFARFDVAVLYRALGVMPSPVYCTKIASKLARTYTDRHGLKD 121

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++EL+G+++SK QQSSDW A+ LS  QL YAASDV+HLHA R +    L R GR+DLA 
Sbjct: 122 VVRELVGVDLSKQQQSSDWGAETLSQAQLDYAASDVLHLHAARERLDAMLAREGRTDLAA 181

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA LDL GW   DIF+H+
Sbjct: 182 ACFGFLPTRARLDLDGWPETDIFAHT 207


>gi|254718341|ref|ZP_05180152.1| hypothetical protein Bru83_02133 [Brucella sp. 83/13]
 gi|265983300|ref|ZP_06096035.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306839563|ref|ZP_07472369.1| 3'-5' exonuclease [Brucella sp. NF 2653]
 gi|264661892|gb|EEZ32153.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306405349|gb|EFM61622.1| 3'-5' exonuclease [Brucella sp. NF 2653]
          Length = 205

 Score =  294 bits (753), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 123/205 (60%), Positives = 154/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H  D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I AGQK 
Sbjct: 2   TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCMVQISPGDGTADVIQIEAGQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL   FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLANAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205


>gi|116249870|ref|YP_765708.1| ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254518|emb|CAK05592.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 208

 Score =  294 bits (753), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 148/206 (71%), Positives = 170/206 (82%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI A   ARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT DIIRIAAGQK
Sbjct: 3   ATIRYHEGDISAADVARYTGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADIIRIAAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV +L D   +KIFHYGRFDIAVLF+TF V   PVFCTKIASRL RTYT++HGLKD
Sbjct: 63  EAPNLVALLEDPTHQKIFHYGRFDIAVLFHTFSVTTTPVFCTKIASRLIRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L +++SKAQQSSDW+A+ LS  QL+YAASDV++LHALR + TE+L R GR D AT
Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIRDGRYDHAT 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFEFLPTRAKLDLLGWEEADIFAHS 208


>gi|23009303|ref|ZP_00050402.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 209

 Score =  293 bits (752), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 111/204 (54%), Positives = 145/204 (71%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           IR+H GD+P +   +   AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I  G    
Sbjct: 8   IRLHRGDLPPDF--QPGSAIAIDTETLGLNPHRDRLCVVQISRGDGSADVVQIRPGDPEP 65

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +L D    KIFH+ RFD+AVLF   GV   PV+CTK+AS+L RTYT++HGLKD +
Sbjct: 66  VRLKAILADPGVLKIFHFARFDLAVLFRALGVMPAPVYCTKVASKLARTYTDRHGLKDVV 125

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +EL+G+++SK QQSSDW A+ LS  Q+ YAASDV+HLHA R +    L R GRS++A +C
Sbjct: 126 RELVGVDLSKQQQSSDWGAETLSQAQIDYAASDVLHLHAARERLDLMLAREGRSEMARAC 185

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
            +FL  RA LDL GW   DIF+HS
Sbjct: 186 FDFLPTRARLDLAGWPETDIFAHS 209


>gi|23501034|ref|NP_697161.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161618108|ref|YP_001591995.1| hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|254705301|ref|ZP_05167129.1| hypothetical protein Bsuib36_15553 [Brucella suis bv. 3 str. 686]
 gi|260567236|ref|ZP_05837706.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261756011|ref|ZP_05999720.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
 gi|23346898|gb|AAN29076.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161334919|gb|ABX61224.1| Hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|260156754|gb|EEW91834.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261745764|gb|EEY33690.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
          Length = 205

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 122/205 (59%), Positives = 154/205 (75%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H  D+P       VDA+A+DTETLGL P RDRLC+VQ+SPGDGT D+I+I A QK 
Sbjct: 2   TIRFHRNDLP-NLDNYQVDAVAIDTETLGLNPHRDRLCVVQISPGDGTADVIQIEADQKK 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+GRFD+AVL + FG   +PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 61  APNLVKLLKDRSITKIFHFGRFDLAVLAHAFGTMPQPVFCTKIASKLTRTYTDRHGLKEI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL ++ISK QQSSDW+A+ LS  QL+YAASDV++LH L+    ++L+R GR+  A +
Sbjct: 121 CSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLERDGRTKQAEA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R+ELDL+GW   DIF+HS
Sbjct: 181 CFKFLPTRSELDLMGWAESDIFAHS 205


>gi|240139043|ref|YP_002963518.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
 gi|240009015|gb|ACS40241.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
          Length = 209

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/204 (54%), Positives = 147/204 (72%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           IR+H GD+P + A     AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I  G    
Sbjct: 8   IRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDPAP 65

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +L D    KIFH+ RFD+AVLF  FGV   PV+CTKIAS+L RTYT++HGLKD +
Sbjct: 66  ERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVV 125

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +EL+G+++SK QQSSDW A  LS  Q+ YAASDV+HLHA R +    L R GR+++A +C
Sbjct: 126 RELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQAC 185

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
            +FL  R++LDL GW  +DIF+H+
Sbjct: 186 FDFLPTRSKLDLAGWPEIDIFAHA 209


>gi|188581677|ref|YP_001925122.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
 gi|179345175|gb|ACB80587.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
          Length = 209

 Score =  293 bits (750), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/204 (54%), Positives = 149/204 (73%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           IR+H GD+P + A     AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I  G    
Sbjct: 8   IRLHRGDLPLDFAPGA--AIAIDTETLGLNPHRDRLCVVQISRGDGSADVVQIRPGDPAP 65

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +L D +  KIFH+ RFD+AVLF  FGV   PV+CTK+AS+L RTYT++HGLKD +
Sbjct: 66  ERLKAVLADPQIVKIFHFARFDLAVLFKAFGVMPMPVYCTKVASKLARTYTDRHGLKDVV 125

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +EL+G+++SK QQSSDW A+ LS  Q+ YAASDV+HLHA R +    L R GR+++A +C
Sbjct: 126 RELVGVDLSKQQQSSDWGAEALSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQAC 185

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
            +FL  RA+LDL GW  +DIF+H+
Sbjct: 186 FDFLPTRAKLDLAGWPEMDIFAHT 209


>gi|254561638|ref|YP_003068733.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
 gi|254268916|emb|CAX24877.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
          Length = 209

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 111/204 (54%), Positives = 147/204 (72%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           IR+H GD+P + A     AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I  G    
Sbjct: 8   IRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDPAP 65

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +L D    KIFH+ RFD+AVLF  FGV   PV+CTKIAS+L RTYT++HGLKD +
Sbjct: 66  ERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVV 125

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +EL+G+++SK QQSSDW A  LS  Q+ YAASDV+HLHA R +    L R GR+++A +C
Sbjct: 126 RELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQAC 185

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
            +FL  R++LDL GW  +DIF+H+
Sbjct: 186 FDFLPTRSKLDLAGWPEIDIFAHA 209


>gi|126732863|ref|ZP_01748654.1| 3'-5' exonuclease [Sagittula stellata E-37]
 gi|126706639|gb|EBA05713.1| 3'-5' exonuclease [Sagittula stellata E-37]
          Length = 204

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 109/203 (53%), Positives = 145/203 (71%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           ++H+GD+P          +A+D ET+GL P RDRLC+VQLS GDG   ++++A GQ  AP
Sbjct: 4   QLHQGDLPDNLDLG--PVVAIDCETMGLHPHRDRLCVVQLSAGDGNAHLVQVARGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  +L D    K+FHYGRFDIA ++  FG    PV+CTKIASRL RTYT++HGLK+  +
Sbjct: 62  NLSRLLTDPDVLKLFHYGRFDIAAMYNAFGALAAPVYCTKIASRLVRTYTDRHGLKNLTQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELLG++ISK QQSSDW A+ L+D Q  YAASDV+HLH LR      L+R GR+++A +C 
Sbjct: 122 ELLGVDISKQQQSSDWGAETLTDAQKDYAASDVLHLHRLRTALNAMLEREGRTEIAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA+LDL GW + DIF+H+
Sbjct: 182 DFLPARAKLDLAGWPDTDIFAHA 204


>gi|158425553|ref|YP_001526845.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158332442|dbj|BAF89927.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 206

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 125/207 (60%), Positives = 154/207 (74%), Gaps = 4/207 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           TIR+H GD+P     +    +A+DTETLGL P RDRLC+VQLS GDGT D+++I AG   
Sbjct: 2   TIRLHRGDLPDSF--QPAPVVAIDTETLGLKPHRDRLCVVQLSNGDGTADVVQIPAGATA 59

Query: 62  -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNLV ML D    K+FH+GRFDIAVL +TFGV   PVFCTKIASRLTRTYT++HGLK
Sbjct: 60  ESAPNLVRMLADPNVVKLFHFGRFDIAVLLHTFGVTTAPVFCTKIASRLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D ++ELLG+++SK QQSSDW+A +L+D QL YAASDV+HLHA + +    L R GR+ LA
Sbjct: 120 DLVRELLGVDLSKQQQSSDWAASELTDAQLAYAASDVLHLHACKEKLEAMLARDGRTALA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
             C  FL  RA LDL GW + DIF+HS
Sbjct: 180 AECFKFLPARAALDLAGWPDEDIFAHS 206


>gi|332716830|ref|YP_004444296.1| Ribonuclease D [Agrobacterium sp. H13-3]
 gi|325063515|gb|ADY67205.1| Ribonuclease D [Agrobacterium sp. H13-3]
          Length = 208

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 150/206 (72%), Positives = 172/206 (83%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI A  AARY+ AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK
Sbjct: 3   ATIRYHEGDISAADAARYLGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  ML D  R+KIFHYGRFDIAVLF+TFGV   PVFCTKIASRLTRTYT++HGLKD
Sbjct: 63  EAPNLTHMLADPARQKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLTRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKE+L ++ISKAQQSSDW+A+ LS  QL+YAASDV+HLHALR + T +L R GR D A 
Sbjct: 123 NLKEMLEVDISKAQQSSDWAAEKLSPAQLEYAASDVLHLHALRDKLTHRLVRDGRLDHAD 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGW+  DIF+HS
Sbjct: 183 ACFAFLPTRAKLDLLGWDETDIFAHS 208


>gi|21328703|gb|AAM48709.1| 3'- 5' exonuclease family protein [uncultured marine
           proteobacterium]
          Length = 204

 Score =  292 bits (748), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 115/205 (56%), Positives = 148/205 (72%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  V++GD+P          +A+D ET+GL P+RDRLC+VQLS GDG   ++++A GQ  
Sbjct: 2   TNHVYKGDLPDGLELG--PIVAIDCETMGLNPKRDRLCVVQLSSGDGHAHLVQVAKGQTA 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D    K+FH+GRFDIA +   FG    PV+CTKIASR+TRTYT++HGLK+ 
Sbjct: 60  APNLCRMLEDPNVLKLFHFGRFDIAAMKEAFGALTAPVYCTKIASRMTRTYTDRHGLKNL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L+ELL ++ISK QQSSDW A DL+  Q++YAASDV++LHALR +  E L R GR +LA S
Sbjct: 120 LQELLCVDISKQQQSSDWGAADLTKAQVEYAASDVLYLHALRERLNEMLIREGRMELAQS 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RAELDL GW + DIF+HS
Sbjct: 180 CFDFLPTRAELDLAGWPDSDIFAHS 204


>gi|90420956|ref|ZP_01228860.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
 gi|90334734|gb|EAS48510.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
          Length = 205

 Score =  291 bits (747), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 119/205 (58%), Positives = 157/205 (76%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIRVH+GD+P    +RY   +A+DTETLGL  RRDRLC+VQLSPGDGT D+++IA GQ  
Sbjct: 2   TIRVHKGDLPD--ISRYTGPVAIDTETLGLDTRRDRLCVVQLSPGDGTADVVQIAKGQSE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APN+  +L D  + KIFHY RFD+A L++ FGV    +FCTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNITALLKDPAKTKIFHYARFDVAALYHAFGVMTDGIFCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +E++G++ISK QQSSDW+A+ LS  Q++YAASDV++LH +     ++L+R  R +LA +
Sbjct: 120 AREMVGVDISKQQQSSDWAAETLSQAQVEYAASDVLYLHDIMGGLYKRLEREDRMELAKA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDL GW++ DIFSHS
Sbjct: 180 CFTFLPTRAKLDLAGWDDEDIFSHS 204


>gi|163851920|ref|YP_001639963.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
 gi|163663525|gb|ABY30892.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
          Length = 209

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 111/204 (54%), Positives = 148/204 (72%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           IR+H GD+P + A     AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I  G    
Sbjct: 8   IRLHHGDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPGDPAP 65

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L+ +L D    KIFH+ RFD+AVLF  FGV   PV+CTKIAS+L RTYT++HGLKD +
Sbjct: 66  ERLMAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVV 125

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +EL+G+++SK QQSSDW A  LS  Q+ YAASDV+HLHA R +    L R GR+++A +C
Sbjct: 126 RELVGVDLSKQQQSSDWGAGTLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQAC 185

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
            +FL  R++LDL GW  +DIF+H+
Sbjct: 186 FDFLPTRSKLDLAGWPEIDIFAHA 209


>gi|89052719|ref|YP_508170.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
 gi|88862268|gb|ABD53145.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
          Length = 203

 Score =  291 bits (746), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 106/204 (51%), Positives = 147/204 (72%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  +++ D+P +        +A+D ET+GL P RDRLC++QLS GDG   ++++A GQ  
Sbjct: 2   TNTLYQTDLPDDLELG--PIVAIDCETMGLHPHRDRLCVIQLSDGDGNAHLVQVAKGQTA 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    K+FH+GRFDIA +++ FG    PV+CTKIAS+L RTYT++HGLK+ 
Sbjct: 60  APNLCALLEDPNTLKLFHFGRFDIAAMYHAFGALTAPVYCTKIASKLVRTYTDRHGLKNL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L+ELLGI+ISK QQSSDW AD L++ Q+ YAASDV++LH ++ +    L R GR++LA +
Sbjct: 120 LQELLGIDISKQQQSSDWGADSLTEAQVDYAASDVLYLHGVKDKLDVMLAREGRTELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA+LDL GW  +DIFSH
Sbjct: 180 CFDFLPMRAKLDLAGWPEMDIFSH 203


>gi|323136907|ref|ZP_08071987.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
 gi|322397668|gb|EFY00190.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
          Length = 204

 Score =  290 bits (743), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 117/204 (57%), Positives = 147/204 (72%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H+GD+PA  A      +A+DTETLGL  RRDRLC+VQLS GDG  ++++IA GQ  
Sbjct: 2   TIRLHQGDLPAGVAV--APIVAIDTETLGLNHRRDRLCVVQLSIGDGDAELVQIAKGQTQ 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           A NLV +LVD K  K+FH+ RFD+ +L  TFGV   PV+CTKIAS+LTRTYT++HGLKD 
Sbjct: 60  AENLVKLLVDPKVLKLFHFARFDMGILAKTFGVMPAPVYCTKIASKLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL G+ ISK QQSSDW A  L+D Q  YAASDV++LH L+ +    L R GR++LA +
Sbjct: 120 ARELAGVEISKQQQSSDWGAATLTDAQQAYAASDVLYLHQLKEKLDAMLAREGRTELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  R  LDL GW   DIFSH
Sbjct: 180 CFDFLPTRTRLDLAGWPESDIFSH 203


>gi|83855386|ref|ZP_00948916.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83941910|ref|ZP_00954372.1| exonuclease, putative [Sulfitobacter sp. EE-36]
 gi|83843229|gb|EAP82396.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83847730|gb|EAP85605.1| exonuclease, putative [Sulfitobacter sp. EE-36]
          Length = 204

 Score =  290 bits (743), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 110/205 (53%), Positives = 139/205 (67%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  V++ D+P          +A+D ET+GL P RDRLC+VQLS GDG   +++IA GQ  
Sbjct: 2   TNTVYQNDLPDGLNLG--PMVAIDCETMGLHPHRDRLCVVQLSGGDGNAHLVQIAKGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    K+FHYGRFDIA L  TFG +  PV+CTKIASRL RTYT++HGL   
Sbjct: 60  APNLCALLEDPHVLKLFHYGRFDIAALLNTFGAKAAPVYCTKIASRLVRTYTDRHGLAKL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL ++ISK QQSSDW A+ L+  Q+ YAASDV+HLH LR    + L R GR +LA +
Sbjct: 120 CQELLSVDISKQQQSSDWGAETLTKAQIDYAASDVLHLHKLRDVLNQMLIREGRIELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDL GW   DIF+H+
Sbjct: 180 CFEFLPTRAQLDLDGWPETDIFAHA 204


>gi|114706944|ref|ZP_01439843.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
 gi|114537494|gb|EAU40619.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
          Length = 207

 Score =  290 bits (743), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 119/205 (58%), Positives = 149/205 (72%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIRVH+GD+P     RY   +A+DTETLGL   RDRLC+VQLSPGDGT D+++IA GQ  
Sbjct: 2   TIRVHKGDLPD--LDRYTGPVAIDTETLGLNTMRDRLCVVQLSPGDGTADVVQIAKGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APN+  +L D  + KIFHY RFD+A L++ FG     +FCTKIASRLTRTYT++HGLKD 
Sbjct: 60  APNISALLADASKTKIFHYARFDVAALYHAFGAMTEGIFCTKIASRLTRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+G+++SK QQSSDW+ + LS  QL YAASDV++LH +     ++L+R  R DLA  
Sbjct: 120 ARELVGVDLSKQQQSSDWAVETLSPAQLDYAASDVLYLHDIMGALYKRLEREDRMDLARE 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R  LDL GWEN DIFSHS
Sbjct: 180 CFRFLPMRVRLDLAGWENEDIFSHS 204


>gi|154244026|ref|YP_001414984.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
 gi|154158111|gb|ABS65327.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
          Length = 206

 Score =  289 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 120/207 (57%), Positives = 150/207 (72%), Gaps = 4/207 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           TIR+H GD+PA+  A     +A+DTET+GL P RDRLC+VQLS GDG+ D+++I  G   
Sbjct: 2   TIRLHRGDLPADFVA--APVVAIDTETMGLNPFRDRLCLVQLSNGDGSADLVQIPQGADA 59

Query: 62  -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             APNL  +L D    K+FH+GRFDIAVL +TF V  +PV+CTKIASRL RTYT++HGLK
Sbjct: 60  TTAPNLTRLLADPAITKLFHFGRFDIAVLQHTFHVMPQPVWCTKIASRLVRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D L+E + ++ISK QQSSDW A DLSD QL YAASDV+HLHA++ +  E L R  R+ LA
Sbjct: 120 DLLRETINVDISKQQQSSDWGAKDLSDAQLAYAASDVLHLHAVKAKLEEMLARENRTGLA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA LDL GW   DIF+HS
Sbjct: 180 AACFAFLPARAALDLSGWAEEDIFAHS 206


>gi|84684593|ref|ZP_01012494.1| exonuclease, putative [Maritimibacter alkaliphilus HTCC2654]
 gi|84667572|gb|EAQ14041.1| exonuclease, putative [Rhodobacterales bacterium HTCC2654]
          Length = 203

 Score =  289 bits (741), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/202 (51%), Positives = 141/202 (69%), Gaps = 2/202 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC+VQ+S GDG   ++++  GQ  AP
Sbjct: 4   HLYKCDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQMSGGDGHAHMVQVERGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML D    KIFH+GRFDIA L   FGV   PV+CTKIAS+L RTYT++HGLK  L+
Sbjct: 62  NLTAMLTDPNVLKIFHFGRFDIAALLNAFGVVTAPVYCTKIASKLIRTYTDRHGLKTLLE 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E+L I+ISK QQ +DW A +L++ QL YAASDV++LH LR +   +L R GR++LA +C 
Sbjct: 122 EILRIDISKYQQQTDWGARELTEAQLDYAASDVLYLHRLREKLDGRLAREGRAELAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSH 206
           +FL  RA+LDL GW + DIF+H
Sbjct: 182 DFLPARAQLDLAGWPDTDIFTH 203


>gi|227824096|ref|YP_002828069.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234]
 gi|227343098|gb|ACP27316.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234]
          Length = 208

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 151/206 (73%), Positives = 171/206 (83%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TIR HEGDI A  AARY  AIA+DTETLGL+PRRDRLC+VQLSPGDGT D+IRIAAGQK
Sbjct: 3   NTIRFHEGDISAADAARYAGAIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQK 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNLV ML D  R+KIFH+GRFDIAVLF+TFGV   PVFCTKIASRLTRTYT++HGLKD
Sbjct: 63  EAPNLVRMLADPARQKIFHFGRFDIAVLFHTFGVTSTPVFCTKIASRLTRTYTDRHGLKD 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           NLKELL ++ISK QQSSDW+AD LS  QL+YAASDV+HLHALR + T +L R GR + A 
Sbjct: 123 NLKELLDVDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLIRDGRMEHAD 182

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C  FL  RA+LDLLGWE  DIF+HS
Sbjct: 183 ACFAFLPTRAKLDLLGWEETDIFAHS 208


>gi|294675670|ref|YP_003576285.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
 gi|294474490|gb|ADE83878.1| ribonuclease D-1 [Rhodobacter capsulatus SB 1003]
          Length = 204

 Score =  289 bits (740), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/205 (53%), Positives = 146/205 (71%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H+ D+P          +A+DTET+GL PRRDRLC+VQ+S GDG   +++IA GQ  
Sbjct: 2   TIHLHQNDLPEGLDLG--PVVAIDTETMGLDPRRDRLCLVQMSSGDGHAHLVQIAKGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           AP L  ML D K EK+FH+ RFDIA L+  FGV   PVFCTKIAS++ RT+T++HGLK  
Sbjct: 60  APRLCAMLADPKVEKLFHFARFDIAALYNAFGVVTAPVFCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L++L+G+++SK QQ+SDW A +L+  QL YAASDV++LH L+     +L R GR++LA +
Sbjct: 120 LQDLVGVDVSKQQQTSDWGAAELTAAQLDYAASDVLYLHQLKAALVTRLAREGRTELAQA 179

Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206
           C +FL  RA LDL+GWE   DIF H
Sbjct: 180 CFDFLPARARLDLMGWEEPNDIFHH 204


>gi|254463169|ref|ZP_05076585.1| 3'-5' exonuclease [Rhodobacterales bacterium HTCC2083]
 gi|206679758|gb|EDZ44245.1| 3'-5' exonuclease [Rhodobacteraceae bacterium HTCC2083]
          Length = 203

 Score =  288 bits (739), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 106/204 (51%), Positives = 142/204 (69%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  +++ DIPA+        +A+D ET+GL P RDRLC++Q+S GDG   ++++A GQ  
Sbjct: 2   TNTLYQNDIPADLDLG--PVVAIDCETMGLHPHRDRLCVIQMSGGDGNAHLVQVAKGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D    K+FH+GRFDIA +   FG    PV+CTKIAS+L RTYT++HGLK+ 
Sbjct: 60  APNLCKMLTDPNVLKLFHFGRFDIAAMQNAFGAVTAPVYCTKIASKLIRTYTDRHGLKNL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L+ELL I+ISK QQSSDW +  L++ QL+YAASDV++LH LR +  ++L R  R  +A +
Sbjct: 120 LQELLNIDISKQQQSSDWGSAKLTNAQLEYAASDVLYLHRLRTELNKRLIREDRMVIAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA LDL GW   DIFSH
Sbjct: 180 CFDFLPMRANLDLKGWPEQDIFSH 203


>gi|218530671|ref|YP_002421487.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
 gi|218522974|gb|ACK83559.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
          Length = 209

 Score =  288 bits (739), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/204 (53%), Positives = 145/204 (71%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           IR+H  D+P + A     AIA+DTETLGL P RDRLC+VQ+S GDG+ D+++I       
Sbjct: 8   IRLHHCDLPPDFAPGA--AIAIDTETLGLNPHRDRLCVVQVSRGDGSADVVQIRPSDPAP 65

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +L D    KIFH+ RFD+AVLF  FGV   PV+CTKIAS+L RTYT++HGLKD +
Sbjct: 66  ERLKAVLADAGVVKIFHFARFDLAVLFNAFGVMPAPVYCTKIASKLARTYTDRHGLKDVV 125

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +EL+G+++SK QQSSDW A  LS  Q+ YAASDV+HLHA R +    L R GR+++A +C
Sbjct: 126 RELVGVDLSKQQQSSDWGAATLSQAQIDYAASDVLHLHAARERLDAMLAREGRTEMAQAC 185

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
            +FL  R++LDL GW  +DIF+H+
Sbjct: 186 FDFLPTRSKLDLAGWPEIDIFAHA 209


>gi|298290361|ref|YP_003692300.1| 3'-5' exonuclease [Starkeya novella DSM 506]
 gi|296926872|gb|ADH87681.1| 3'-5' exonuclease [Starkeya novella DSM 506]
          Length = 210

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 120/209 (57%), Positives = 158/209 (75%), Gaps = 4/209 (1%)

Query: 3   TIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +IR+H GD+             +A+DTETLGL P RDRLC+VQLSPGDGT D+++I AG 
Sbjct: 2   SIRLHRGDLVDLSRYTPENAPFVAIDTETLGLNPHRDRLCVVQLSPGDGTADVVQIPAGA 61

Query: 61  K--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              +APNL  +L D +  K+FH+ RFD+AVL  TFG+ V PV+CTKIASRLTRTYT++HG
Sbjct: 62  GPGSAPNLEALLTDPRITKLFHFARFDVAVLGKTFGLTVAPVWCTKIASRLTRTYTDRHG 121

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           LK+ ++EL+G+++SK QQSSDW+A++LS+ QLQYAASDV++LHALR +    L R GR++
Sbjct: 122 LKELVRELIGVDLSKQQQSSDWAAEELSEAQLQYAASDVLYLHALREKLASMLARDGRTE 181

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSHS 207
           LA SC  FL  RA+LDL GW + DIF+HS
Sbjct: 182 LAQSCFEFLPTRAKLDLAGWPDEDIFAHS 210


>gi|217976351|ref|YP_002360498.1| 3'-5' exonuclease [Methylocella silvestris BL2]
 gi|217501727|gb|ACK49136.1| 3'-5' exonuclease [Methylocella silvestris BL2]
          Length = 204

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 121/204 (59%), Positives = 153/204 (75%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H+GD+P   A  +  A+A+DTET+GL+P RDRLC+VQLS GDG+ D+++IA  Q  
Sbjct: 2   TIRLHKGDLPEGEA--FSGAVAIDTETMGLVPGRDRLCLVQLSRGDGSADLVQIAPAQTA 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D   EK+FH+ RFDIAVL+ TFGV   P++CTKIAS+L RTYT++HGLKD 
Sbjct: 60  APNLTRLLADPAVEKLFHFARFDIAVLYKTFGVMTGPIYCTKIASKLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLGI +SK QQSSDW  D LS+ QL YAASDV+HLHALR +    L+R GR  LA +
Sbjct: 120 ARELLGIELSKQQQSSDWGGDILSEAQLAYAASDVLHLHALRTKLDAMLEREGRRALAEA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA+LDL+GW + DIFSH
Sbjct: 180 SFAFLPTRAKLDLMGWGDSDIFSH 203


>gi|254487503|ref|ZP_05100708.1| ribonuclease D [Roseobacter sp. GAI101]
 gi|214044372|gb|EEB85010.1| ribonuclease D [Roseobacter sp. GAI101]
          Length = 204

 Score =  288 bits (737), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 104/204 (50%), Positives = 137/204 (67%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  V++ D+P          +A+D ET+GL P RDRLC+VQLS GDG   +++I  GQ  
Sbjct: 2   TNTVYQNDLPDGLDLG--PIVAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQIGKGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA +   FG +  PV+CTKIASRL RT+T++HGL   
Sbjct: 60  APNLCALLEDPEVLKLFHFGRFDIAAMQNAFGAKTAPVYCTKIASRLVRTFTDRHGLAKL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG +ISK QQSSDW A  L+  Q+ YAASDV++LH LR +    L R  R D+A +
Sbjct: 120 CQELLGTDISKQQQSSDWGAAQLTQAQIDYAASDVLYLHQLRDKLNAMLIREDRMDIAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA+LDL GW + DIF+H
Sbjct: 180 CFDFLPMRAQLDLAGWPDTDIFAH 203


>gi|163745220|ref|ZP_02152580.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161382038|gb|EDQ06447.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 204

 Score =  287 bits (736), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 106/207 (51%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT   +++ D+P +        +A+D ET+GL P RDRLC+VQLS GDG   +++IA GQ
Sbjct: 1   MTNF-LYQNDLPDDLDLG--PMVAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQIAKGQ 57

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             APNL  +L +    K+FHYGRFDIA +   FG    PV+CTKIASRL RTYT++HGL 
Sbjct: 58  TEAPNLCALLENPHVLKLFHYGRFDIAAMLNAFGATAAPVYCTKIASRLIRTYTDRHGLA 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
              +ELL ++ISK QQSSDW A +L+  Q+ YAASDV++LH LR +  ++L R GR D+A
Sbjct: 118 KLCQELLSVDISKQQQSSDWGAKELTQAQIDYAASDVLYLHRLRDELNKRLIREGRMDMA 177

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C +FL  RA LDL GW + DIF+H+
Sbjct: 178 QACFDFLPMRARLDLEGWPDTDIFAHA 204


>gi|182677567|ref|YP_001831713.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633450|gb|ACB94224.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 204

 Score =  287 bits (736), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 118/204 (57%), Positives = 154/204 (75%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +H+GD+P   +  +  ++AVDTETLGL+P RDRLC+VQLS GDG   +++I  GQ +A
Sbjct: 3   IHLHKGDLPENVS--FGRSVAVDTETLGLLPHRDRLCLVQLSGGDGQAHLVQIKPGQTHA 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P+L  +L+D    K+FHY RFDIAVL+ TFG    P++CTKIAS+LTRTYT++HGLKD  
Sbjct: 61  PHLERLLIDPNVTKLFHYARFDIAVLYKTFGTMTTPLYCTKIASKLTRTYTDRHGLKDLA 120

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +ELLG+++SK QQSSDW AD LSD QL YAASDV+HLHALR +    L+R  R++LA +C
Sbjct: 121 RELLGVDLSKQQQSSDWGADTLSDAQLTYAASDVLHLHALRTKLDGMLEREHRTELAQAC 180

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
            +FL  RA+LDL GW   DIFSH+
Sbjct: 181 FDFLPTRAKLDLAGWAETDIFSHA 204


>gi|149912958|ref|ZP_01901492.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
 gi|149813364|gb|EDM73190.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
          Length = 203

 Score =  287 bits (736), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 102/202 (50%), Positives = 139/202 (68%), Gaps = 2/202 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC+VQ+S GDG   +++I  GQ  AP
Sbjct: 4   YLYKNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQMSGGDGNAYLVQIDKGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  +L +    K+FH+GRFDIA +F  FG    PV+CTKIAS+L RTYT++HGLK+ ++
Sbjct: 62  NLAALLENPDILKLFHFGRFDIAAMFNAFGALAAPVYCTKIASKLVRTYTDRHGLKNLMQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELL  +ISK QQSSDW A  L++ QL YAASDV++LH LR +    L R GR ++A +C 
Sbjct: 122 ELLDKDISKQQQSSDWGAPKLTEAQLDYAASDVLYLHQLRDELNRMLAREGRVEMAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSH 206
           +FL  RA+LDL GW  +DIF+H
Sbjct: 182 DFLPIRAKLDLAGWPEIDIFAH 203


>gi|119713543|gb|ABL97595.1| putative exonuclease [uncultured marine bacterium EB0_39F01]
          Length = 204

 Score =  287 bits (735), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 103/207 (49%), Positives = 141/207 (68%), Gaps = 3/207 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT    ++ D+P          +A+DTET+GL P RDRLC++Q S GDG   I++I    
Sbjct: 1   MTNF-TYKNDLPDNLELG--PIVAIDTETMGLNPMRDRLCVIQFSSGDGNAHIVQIEPDA 57

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             APN+  +L+D+ + K+FH+ RFDIA+L + F + + PV+CTKIAS+L RTYTN+HGLK
Sbjct: 58  PQAPNICKILLDQNKVKLFHFARFDIAILKHHFKINISPVYCTKIASKLVRTYTNKHGLK 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           + L+E+L I ISK QQSSDW A +L+  Q++YAASDV++LH L  +    L+R  R ++A
Sbjct: 118 NLLREMLSIEISKQQQSSDWGASELTKAQIEYAASDVLYLHKLMDKLNLNLKRENRYEIA 177

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C NFL  RA LDL GW   DIFSHS
Sbjct: 178 EACFNFLPMRATLDLAGWSEDDIFSHS 204


>gi|170743378|ref|YP_001772033.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
 gi|168197652|gb|ACA19599.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
          Length = 204

 Score =  286 bits (734), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 117/205 (57%), Positives = 146/205 (71%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
             R+H GD+P + A     AIAVDTETLGL P RDRLC+VQ+S GDG  D+++IA G   
Sbjct: 2   PHRLHRGDLPDDYA--PGPAIAVDTETLGLEPHRDRLCVVQISRGDGEADLVQIAKGGPE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L D    KIFH+ RFD+AVLF+  GV   P++CTK+ASRL+RTYT++HGLKD 
Sbjct: 60  PVVLKRVLTDPAVTKIFHFARFDLAVLFHRLGVMPGPIYCTKVASRLSRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLGI ISK QQSSDW A+ LS  Q++YAASDV+HLHALR +    L R  R+ LA +
Sbjct: 120 VRELLGIEISKQQQSSDWGAETLSPAQIEYAASDVLHLHALRAKLDAMLAREERTALAEA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDLLGW+ VDI +HS
Sbjct: 180 CFAFLPTRARLDLLGWDEVDILAHS 204


>gi|110636308|ref|YP_676516.1| 3'-5' exonuclease [Mesorhizobium sp. BNC1]
 gi|110287292|gb|ABG65351.1| 3'-5' exonuclease [Chelativorans sp. BNC1]
          Length = 205

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 126/205 (61%), Positives = 161/205 (78%), Gaps = 1/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+ D+P   +   VDA+A+DTETLGL P RDRLC+VQLSPGDGT D+++IAAGQ+ 
Sbjct: 2   TIRFHQYDLPD-LSRYDVDAVAIDTETLGLNPHRDRLCVVQLSPGDGTADVVQIAAGQRR 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L + +  K+FHY RFDIAVL+++FGV   PVFCTKIASRLTRTYT++HGLKD 
Sbjct: 61  APNLVALLRNRRITKLFHYARFDIAVLYHSFGVMPDPVFCTKIASRLTRTYTDRHGLKDI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL +N+SKAQQSSDW+A+ L+ EQL+YAASDV++LH L     ++L R GR+  A +
Sbjct: 121 CYELLQVNLSKAQQSSDWAAEQLTPEQLEYAASDVLYLHRLADVLQQRLMRDGRAREAQA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDL+GW+  DIF+HS
Sbjct: 181 CFKFLPTRAKLDLMGWDEQDIFAHS 205


>gi|328545553|ref|YP_004305662.1| 3'-5' exonuclease [polymorphum gilvum SL003B-26A1]
 gi|326415294|gb|ADZ72357.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1]
          Length = 206

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 122/205 (59%), Positives = 155/205 (75%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+ D+P   A     A+AVDTETLGL P RDRLC+VQLSPGDGT D+++IA GQ+ 
Sbjct: 2   TIRHHKTDLPDLSAYDAAQAVAVDTETLGLNPHRDRLCVVQLSPGDGTADVVQIARGQRA 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D  + KIFH+ RFD+AVL +  G+ V PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 62  APNLARLLTDPAKMKIFHFARFDLAVLRHNLGIEVAPVWCTKIASKLVRTYTDRHGLKDI 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG+++SK QQSSDW+A+ L+D QL YAASDV+HLHALR +    L+R  R+ LA +
Sbjct: 122 TRELLGVDLSKQQQSSDWAAETLTDAQLAYAASDVLHLHALREKLAAMLEREERTALARA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDL+GWE  DIF+H+
Sbjct: 182 CYEFLPTRAALDLMGWEEQDIFAHT 206


>gi|254470791|ref|ZP_05084194.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
 gi|211959933|gb|EEA95130.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
          Length = 206

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 112/205 (54%), Positives = 148/205 (72%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+ D+P        DA+AVDTETLGL P RDRLC+VQLS GDG+ D+++I  GQ  
Sbjct: 2   TIRYHKNDLPDLSNYSSADAVAVDTETLGLNPHRDRLCVVQLSSGDGSADVVQIERGQLA 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +  D  + KIFH+ RFD+A+L     + V PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 62  APNLQALFEDASKPKIFHFARFDVAILKEYLDISVSPVWCTKIASKLVRTYTDRHGLKDI 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+G+++SK QQSSDW+A+ L+D QL YAASDV+HLH L+ +    L+R  R+++A  
Sbjct: 122 CRELIGVDLSKQQQSSDWAAEKLTDAQLAYAASDVLHLHKLKERLEFMLEREERTEIAQK 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDL GW   DIF+HS
Sbjct: 182 CFDFLPTRAQLDLAGWPETDIFAHS 206


>gi|163757673|ref|ZP_02164762.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
 gi|162285175|gb|EDQ35457.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
          Length = 207

 Score =  286 bits (733), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 136/207 (65%), Positives = 163/207 (78%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IR H+GDI  +  ARY   IAVDTETLGL+PRRDRLC+VQLSPGDG+ D+I+IA GQ
Sbjct: 1   MADIRAHKGDISDQAMARYTGDIAVDTETLGLVPRRDRLCVVQLSPGDGSADVIQIAKGQ 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K APNLV +L D KR K+FHYGRFDIAVL+  FGV   PVFCTKIASRLTRTYT++HGLK
Sbjct: 61  KRAPNLVALLTDRKRRKLFHYGRFDIAVLYNAFGVTTEPVFCTKIASRLTRTYTDRHGLK 120

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  +ELL +++SK QQSSDW+A+ L+  QL+YAASDV+HLHAL  + TE+LQR  R   A
Sbjct: 121 DVTRELLEVDLSKQQQSSDWAAETLTPAQLEYAASDVLHLHALTAKLTERLQRDDREAHA 180

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDL+GWE  DIF+HS
Sbjct: 181 KACFEFLPTRAKLDLMGWEETDIFAHS 207


>gi|163738084|ref|ZP_02145500.1| exonuclease, putative [Phaeobacter gallaeciensis BS107]
 gi|161388700|gb|EDQ13053.1| exonuclease, putative [Phaeobacter gallaeciensis BS107]
          Length = 204

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/203 (53%), Positives = 143/203 (70%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC+VQLS GDG   +++IA GQ  AP
Sbjct: 4   HLYQNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQLSGGDGNAHMVQIAKGQSEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML D    K+FH+GRFDIA +++ FG    PV+CTKIASRL RTYT++HGL++  +
Sbjct: 62  NLCAMLEDPNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLRNLTQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           EL+G++ISK QQ SDW A  LSD QL YAASDV+HLH LR    ++L R  RS++A +C 
Sbjct: 122 ELIGVDISKQQQMSDWGAAQLSDAQLDYAASDVLHLHRLRAALDKRLDREDRSEMAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA+LDL GW + DIF+HS
Sbjct: 182 DFLPMRAKLDLAGWSDTDIFAHS 204


>gi|114769797|ref|ZP_01447407.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|114549502|gb|EAU52384.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|161170293|gb|ABX59263.1| 5-exonuclease family protein [uncultured marine bacterium
           EB000_55B11]
 gi|297183821|gb|ADI19944.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 204

 Score =  286 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 103/207 (49%), Positives = 141/207 (68%), Gaps = 3/207 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT    ++ D+P          +A+DTET+GL P RDRLC++Q S GDG   I++I    
Sbjct: 1   MTNF-TYKNDLPDNLELG--PIVAIDTETMGLNPMRDRLCVIQFSSGDGHAHIVQIEPDA 57

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             APN+  +L+D+ + K+FH+ RFDIA+L + F + + PV+CTKIAS+L RTYTN+HGLK
Sbjct: 58  PQAPNICKILLDQNKVKLFHFARFDIAILKHHFKINISPVYCTKIASKLVRTYTNKHGLK 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           + L+E+L I ISK QQSSDW A +L+  Q++YAASDV++LH L  +    L+R  R ++A
Sbjct: 118 NLLREMLSIEISKQQQSSDWGASELTKAQIEYAASDVLYLHKLMDKLNLNLKRENRYEIA 177

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C NFL  RA LDL GW   DIFSHS
Sbjct: 178 EACFNFLPMRATLDLAGWSEDDIFSHS 204


>gi|89067364|ref|ZP_01154877.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
 gi|89046933|gb|EAR52987.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
          Length = 203

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/202 (52%), Positives = 144/202 (71%), Gaps = 2/202 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC+VQ+S GDG   ++++A GQ +AP
Sbjct: 4   HLYKNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQMSGGDGHAHLVQVAKGQTSAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NLV ML +    K+FH+GRFDIA L   FG R  PV+CTKIAS+L RT+T++HGLK  L+
Sbjct: 62  NLVAMLENPDVLKLFHFGRFDIAALMNAFGARTAPVYCTKIASKLVRTFTDRHGLKVLLQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           +L+G+++SK QQ SDW A+ LSD QL YAASDV+HLH LR +  E L R GR+ +A +C 
Sbjct: 122 DLVGVDVSKHQQQSDWGAETLSDAQLDYAASDVLHLHRLREKLDEMLAREGRTMIAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSH 206
           +FL  RA+LDL GW + DIFSH
Sbjct: 182 DFLPTRAQLDLAGWPDQDIFSH 203


>gi|260428903|ref|ZP_05782880.1| 3'-5' exonuclease [Citreicella sp. SE45]
 gi|260419526|gb|EEX12779.1| 3'-5' exonuclease [Citreicella sp. SE45]
          Length = 204

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/203 (52%), Positives = 142/203 (69%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++GD+P          +A+D ET+GL P RDRLC+VQLS GDG   ++++A GQ  AP
Sbjct: 4   HLYKGDLPDGLDLG--PVVAIDCETMGLDPHRDRLCVVQLSGGDGNAHLVQVARGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  +L DE   K+FH+GRFDIA +++ FG    PV+CTKIASR+ RTYT++HGLK   +
Sbjct: 62  NLCRLLRDETVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRMVRTYTDRHGLKALTQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELL ++ISK QQSSDW A DL+  QL YAASDV++LH LR +    L+R GR+ LA +C 
Sbjct: 122 ELLSVDISKQQQSSDWGAADLTAAQLDYAASDVLYLHQLRDRLNGMLEREGRTALAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA LDL GW   DIF+H+
Sbjct: 182 DFLPTRALLDLEGWPETDIFAHA 204


>gi|149201444|ref|ZP_01878419.1| exonuclease, putative [Roseovarius sp. TM1035]
 gi|149145777|gb|EDM33803.1| exonuclease, putative [Roseovarius sp. TM1035]
          Length = 203

 Score =  285 bits (731), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 106/202 (52%), Positives = 139/202 (68%), Gaps = 2/202 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC+VQLS GDG   +++++ GQ  AP
Sbjct: 4   HLYQNDLPDGLDLG--PVVAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQVSKGQTTAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  +L +    K+FH+GRFDIA +   FG    PV+CTKIAS+L RTYT++HGLK  L+
Sbjct: 62  NLARLLENPDVLKLFHFGRFDIAAMQNAFGALAAPVYCTKIASKLIRTYTDRHGLKYLLQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELL I+ISK QQSSDW AD LS  QL YAASDV++LH LR +   +L R GR +LA +C 
Sbjct: 122 ELLNIDISKQQQSSDWGADSLSAAQLDYAASDVLYLHRLRDELNARLIREGRMELAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSH 206
           +FL  RA LDL GW  +DIF+H
Sbjct: 182 DFLPQRALLDLAGWPEIDIFAH 203


>gi|163742520|ref|ZP_02149906.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10]
 gi|161384105|gb|EDQ08488.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10]
          Length = 226

 Score =  285 bits (730), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 108/203 (53%), Positives = 143/203 (70%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC+VQLS GDG   +++IA GQ  AP
Sbjct: 26  HLYQNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCVVQLSGGDGNAHMVQIAKGQSEAP 83

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML D    K+FH+GRFDIA +++ FG    PV+CTKIASRL RTYT++HGL++  +
Sbjct: 84  NLCAMLEDLNVLKLFHFGRFDIAAMYHAFGALAAPVYCTKIASRLVRTYTDRHGLRNLTQ 143

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           EL+G++ISK QQ SDW A  LSD QL YAASDV+HLH LR    ++L R  RS++A +C 
Sbjct: 144 ELIGVDISKQQQMSDWGAAQLSDAQLDYAASDVLHLHRLRAALDKRLDREDRSEMAQACF 203

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA+LDL GW + DIF+HS
Sbjct: 204 DFLPMRAKLDLAGWSDTDIFAHS 226


>gi|329114438|ref|ZP_08243200.1| Ribonuclease D [Acetobacter pomorum DM001]
 gi|326696514|gb|EGE48193.1| Ribonuclease D [Acetobacter pomorum DM001]
          Length = 256

 Score =  284 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/208 (49%), Positives = 140/208 (67%), Gaps = 7/208 (3%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--- 60
           I +H  D+P      +  ++AVDTET+GL P RDRLC+VQLS GDGT  +++I       
Sbjct: 49  ITLHRNDLPDNVT--FTGSVAVDTETMGLNPHRDRLCLVQLSAGDGTAHLVQIIPTSLGG 106

Query: 61  --KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              + PNL  ++ D    KI H+ RFD+A+L +  G+ V PV CTKIA+RL RT+T++HG
Sbjct: 107 KGYDCPNLKRVMADPSITKIMHFARFDVAILQHALGITVSPVVCTKIAARLVRTFTDRHG 166

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L    +++LG+ +SK QQ+SDW A +L  EQL YAASDV++LHAL  + +  L R GR +
Sbjct: 167 LAALCRDMLGVELSKQQQTSDWGALELKPEQLAYAASDVLYLHALWDKMSALLDREGRRE 226

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA +C +FL  RA LDLLG+E+ DIFSH
Sbjct: 227 LAQACYDFLPARARLDLLGYEDPDIFSH 254


>gi|310817096|ref|YP_003965060.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
 gi|308755831|gb|ADO43760.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
          Length = 227

 Score =  284 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 106/206 (51%), Positives = 142/206 (68%), Gaps = 3/206 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M    +++ D+P +        IA+D ET+GL P RDRLC+VQ+S GDG   +I+I+ GQ
Sbjct: 25  MANF-LYQNDLPDDLDLG--PVIAIDCETMGLNPHRDRLCLVQISGGDGNAHMIQISPGQ 81

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           ++APNL  ML D    K+FHYGRFDIA +++ FG   +PV+CTKIAS++ RTYT +HGLK
Sbjct: 82  RSAPNLARMLEDANILKLFHYGRFDIAAMYHAFGALAQPVYCTKIASKMVRTYTERHGLK 141

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             L++L+G++ISK QQ SDW A  L+  QL YAASDV++LH LR      L R GR+ LA
Sbjct: 142 FLLQDLIGVDISKHQQQSDWGAASLTPAQLDYAASDVLYLHRLRAHLDALLAREGRTGLA 201

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C +FL  RA LDL GW+  DIF+H
Sbjct: 202 QACFDFLPTRARLDLEGWQENDIFAH 227


>gi|126724660|ref|ZP_01740503.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
 gi|126705824|gb|EBA04914.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
          Length = 203

 Score =  284 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 105/202 (51%), Positives = 138/202 (68%), Gaps = 2/202 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            V++ D+P          +A+D ET+GL P RDRLC++Q+S GDG   ++++  GQ  AP
Sbjct: 4   TVYKRDLPDGLDLG--PVVAIDCETMGLNPIRDRLCLIQMSNGDGNAHMVQVEKGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML D    K+FH+GRFDIA +   FGV   PV+CTKIAS++ RTYT++HGL++ L+
Sbjct: 62  NLCRMLADPNVLKLFHFGRFDIAAMHNAFGVLTEPVYCTKIASKMVRTYTDRHGLRNLLQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELL ++ISK QQ SDW A+ L+  QL YAASDV+HLH LR +  E L R GR +LA SC 
Sbjct: 122 ELLKVDISKFQQMSDWGAETLTKAQLDYAASDVLHLHRLRDRLNELLVREGRMELAQSCF 181

Query: 185 NFLMDRAELDLLGWENVDIFSH 206
           +FL  RA LDL GW   DIF+H
Sbjct: 182 DFLPSRALLDLKGWPETDIFAH 203


>gi|163867544|ref|YP_001608743.1| hypothetical protein Btr_0277 [Bartonella tribocorum CIP 105476]
 gi|161017190|emb|CAK00748.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
          Length = 206

 Score =  284 bits (729), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 130/207 (62%), Positives = 159/207 (76%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P        DAIA+DTETLGL P RDRLC+VQ+SPGDGT DII+IA GQ
Sbjct: 1   MAEIRVHQGDLP-NLDNYKTDAIAIDTETLGLQPHRDRLCVVQISPGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           KNAPNLV +L D    KIFH+GRFD+A+L +TFGV    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  KNAPNLVKLLEDNAVTKIFHFGRFDLAILAHTFGVMPEAVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+A+ LS  Q++YAASDV++LH L+  F E+L+R  R  +A
Sbjct: 120 EICNELLNVNISKQQQSSDWAAETLSQAQIEYAASDVLYLHRLKAIFEERLRREERESVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDLLGW  VDIF+HS
Sbjct: 180 KACFQFLPMRAKLDLLGWSEVDIFAHS 206


>gi|99079868|ref|YP_612022.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
 gi|99036148|gb|ABF62760.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
          Length = 204

 Score =  284 bits (728), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 111/207 (53%), Positives = 145/207 (70%), Gaps = 3/207 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M T  +++ D+P          +A+D ET+GL P RDRLC+VQ+S GDG   +++IA GQ
Sbjct: 1   MAT-HLYQHDLPNSLDLG--PVVAIDCETMGLNPHRDRLCVVQMSSGDGDAHLVQIAKGQ 57

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNL  ML +    K+FHYGRFDIA L++ FG    PV+CTKIASRL RTYT++HGLK
Sbjct: 58  TDAPNLTAMLTNPDVLKLFHYGRFDIAALYHRFGALAAPVYCTKIASRLVRTYTDRHGLK 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +  ++LLG +ISK QQ SDW A+ L+  Q+ YAASDV+HLH LR    ++L R GRSDLA
Sbjct: 118 NLTQDLLGQDISKQQQMSDWGAETLTRAQMDYAASDVLHLHRLRDALDQRLVREGRSDLA 177

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C +FL  RA LDL GW + DIF+HS
Sbjct: 178 QACFDFLPTRARLDLAGWPDTDIFAHS 204


>gi|154250652|ref|YP_001411476.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
 gi|154154602|gb|ABS61819.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
          Length = 203

 Score =  284 bits (727), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 105/203 (51%), Positives = 140/203 (68%), Gaps = 2/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           + +H GD+P   +  + +++AVDTET+GL P RD+LC+VQLS GDG   I+++  G  NA
Sbjct: 3   VTLHRGDLPEGLS--FGESVAVDTETMGLHPERDQLCVVQLSAGDGNAHIVQLDRGTYNA 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  ++ D    KIFH+ RFD+A+L    GV   PV+CTKIAS+L RTYT++HGLKD  
Sbjct: 61  PRLRALMADPAILKIFHFARFDVAMLQRYLGVVTAPVYCTKIASKLVRTYTDRHGLKDLA 120

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +EL+ I++SK QQSSDW A  L+D QL YAASDV+HLH ++      L R GR++LA +C
Sbjct: 121 RELVNIDMSKQQQSSDWGAASLTDAQLSYAASDVLHLHEIKSVLDGMLAREGRTELARAC 180

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  RA LDL GW   DIF+H
Sbjct: 181 FAFLPVRAALDLAGWPEEDIFAH 203


>gi|254438617|ref|ZP_05052111.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307]
 gi|198254063|gb|EDY78377.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307]
          Length = 203

 Score =  284 bits (727), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 103/202 (50%), Positives = 140/202 (69%), Gaps = 2/202 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P +        +A+D ET+GL P RDRLC++QLS GDG   +I+I+ GQ  AP
Sbjct: 4   HLYQHDLPDDLDLG--PVVAIDCETMGLNPHRDRLCLIQLSSGDGNCHLIQISVGQTTAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  +L D +  K+FH+GRFDIA +   FG    PV+CTKIAS+L RTYT++HGLK+ L+
Sbjct: 62  NLCKVLADPQVLKLFHFGRFDIAAMLNAFGTVTAPVYCTKIASKLIRTYTDRHGLKNLLQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E L ++ISK QQ SDW A+ LS  Q+ YAASDV++LH LR +   +L R  R+D+A +C 
Sbjct: 122 EFLRVDISKFQQQSDWGAETLSKAQIDYAASDVLYLHQLRDELNIRLVRERRTDMAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSH 206
           +FL  RA+LDL GW   DIFSH
Sbjct: 182 DFLPMRAKLDLAGWPEQDIFSH 203


>gi|159046129|ref|YP_001534923.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
 gi|157913889|gb|ABV95322.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
          Length = 203

 Score =  284 bits (727), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 112/204 (54%), Positives = 140/204 (68%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  +H  D+P          +A+DTET+GL+P RDRLC+VQLS GDG   +++IA GQ  
Sbjct: 2   TNHLHSHDLPDGLDLG--PVVAIDTETMGLVPARDRLCVVQLSSGDGDAHMVQIAQGQTE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D K  K+FHY RFD+A L   FGVR  P++CTKIAS+L RTYT++HGLK  
Sbjct: 60  APNLTRMLTDPKVLKLFHYARFDVAALENAFGVRTAPIYCTKIASKLVRTYTDRHGLKAL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L E+LG+++SKAQQSSDW A  LS  QL YAASDV++LH L+      L R GR++LA +
Sbjct: 120 LSEVLGVDVSKAQQSSDWGAPTLSAAQLDYAASDVLYLHRLKEALDGMLAREGRTELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL  RA LDL GW  +DIF H
Sbjct: 180 CFEFLPTRARLDLGGWSEIDIFHH 203


>gi|114764076|ref|ZP_01443315.1| exonuclease, putative [Pelagibaca bermudensis HTCC2601]
 gi|114543434|gb|EAU46449.1| exonuclease, putative [Roseovarius sp. HTCC2601]
          Length = 204

 Score =  283 bits (726), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 110/203 (54%), Positives = 139/203 (68%), Gaps = 2/203 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++GD+P          +A+D ET+GL P RDRLC+VQLS GDG   ++++A GQ  AP
Sbjct: 4   HLYKGDLPDGLDLG--PVVAIDCETMGLEPHRDRLCVVQLSGGDGNAHLVQVAKGQTEAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  +L DE   K+FHYGRFDIA ++  FG    PV+CTKIASR+ RTYT++HGLK   +
Sbjct: 62  NLCRLLRDECVLKLFHYGRFDIAAMYNAFGALAAPVYCTKIASRMVRTYTDRHGLKTLTQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELL ++ISK QQSSDW A+ L++ Q  YAASDV+HLH LR      L R GRS LA SC 
Sbjct: 122 ELLSVDISKQQQSSDWGAETLTEAQRDYAASDVLHLHKLREALDGMLAREGRSALAQSCF 181

Query: 185 NFLMDRAELDLLGWENVDIFSHS 207
           +FL  RA LDL GW   DIF+HS
Sbjct: 182 DFLPTRALLDLEGWPGTDIFAHS 204


>gi|119385336|ref|YP_916392.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
 gi|119375103|gb|ABL70696.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
          Length = 204

 Score =  283 bits (724), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 114/205 (55%), Positives = 150/205 (73%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI ++  D+P +        +A+DTET+GL PRRDRLC+VQLS GDG   +++IA GQ+ 
Sbjct: 2   TITLYRNDLPDDLDLG--PVVAIDTETMGLDPRRDRLCLVQLSSGDGNAHLVQIAKGQRE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D K  K+FH+GRFDIA L   FGV  +PV+CTKIAS++ RTYT++HGLK  
Sbjct: 60  APNLARMLADPKVLKLFHFGRFDIAALEAAFGVVTKPVWCTKIASKMVRTYTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G++ISK QQ+SDW A +LS+ QL+YAASDV++LHAL+ +  ++L R GR  LA +
Sbjct: 120 LSELVGVDISKQQQTSDWGAAELSEAQLEYAASDVLYLHALKAELEKRLAREGRLGLAQA 179

Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206
           C +FL  RA LDLLGW +  DIF H
Sbjct: 180 CFDFLPARAHLDLLGWGDENDIFHH 204


>gi|103487824|ref|YP_617385.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256]
 gi|98977901|gb|ABF54052.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256]
          Length = 205

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 3/206 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-K 61
           ++  HE D+P +       A+AVDTET+GL P RDRLC+VQ+S G G   ++R   G   
Sbjct: 2   SVYFHEEDLPEDVL--GPGAVAVDTETMGLNPLRDRLCLVQISDGSGDEHLVRFRPGSSY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +AP L  +L D +R K+FH+ RFDIA L    GV   PV+CTKIAS+L RTYT++HGLK+
Sbjct: 60  DAPVLKAILADPERLKLFHFARFDIAALQQALGVVTTPVYCTKIASKLVRTYTDRHGLKE 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG  +SK QQSSDW A +LS+ Q  YAASDV  LHA++     +L R GR++LA 
Sbjct: 120 LVRELLGQEVSKQQQSSDWGAAELSEAQRDYAASDVRFLHAMKEILDARLAREGRTELAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  RA LDL GW  VDIF+HS
Sbjct: 180 ACFDFLPTRAALDLAGWPEVDIFAHS 205


>gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 217

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 103/208 (49%), Positives = 140/208 (67%), Gaps = 7/208 (3%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--- 60
           I +H  D+P      +  ++AVDTET+GL P RDRLC+VQLS GDGT  +++I       
Sbjct: 10  ITLHRNDLPDNVT--FTGSVAVDTETMGLNPHRDRLCLVQLSAGDGTAHLVQIIPTSLGG 67

Query: 61  --KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              + PNL  +L D    KI H+ RFD+A+L +  G+ V PV CTKIA+RL RT+T++HG
Sbjct: 68  KGYDCPNLKRVLADPSITKIMHFARFDVAILQHALGITVSPVVCTKIAARLVRTFTDRHG 127

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L    +++LG+ +SK QQ+SDW A +L  EQL YAASDV++LHAL  + +  L R GR +
Sbjct: 128 LAALCRDMLGVELSKQQQTSDWGAKELKPEQLAYAASDVLYLHALWDKMSALLDREGRRE 187

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA +C +FL  RA LDLLG+E+ DIFSH
Sbjct: 188 LAQACYDFLPARARLDLLGYEDPDIFSH 215


>gi|85705765|ref|ZP_01036862.1| exonuclease, putative [Roseovarius sp. 217]
 gi|85669755|gb|EAQ24619.1| exonuclease, putative [Roseovarius sp. 217]
          Length = 203

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/202 (51%), Positives = 138/202 (68%), Gaps = 2/202 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC+VQLS GDG   ++++A GQ +AP
Sbjct: 4   HLYQNDLPDGLDLG--SVVAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQVAKGQTSAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  +L D    K+FH+GRFDIA +   FG    PV+CTKIAS+L RTYT++HGLK  L+
Sbjct: 62  NLERLLTDPNVLKLFHFGRFDIAAMHNAFGALAAPVYCTKIASKLIRTYTDRHGLKYLLQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ELL I+ISK QQSSDW A+ L+  QL YAASDV++LH LR +   +L R  R  LA +C 
Sbjct: 122 ELLNIDISKQQQSSDWGAESLTSAQLDYAASDVLYLHRLRDELNTRLVREDRMGLAQACF 181

Query: 185 NFLMDRAELDLLGWENVDIFSH 206
           +FL  RA LDL GW  +DIF+H
Sbjct: 182 DFLPQRAVLDLAGWPEIDIFAH 203


>gi|220925751|ref|YP_002501053.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
 gi|219950358|gb|ACL60750.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
          Length = 204

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 113/205 (55%), Positives = 142/205 (69%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
             R+H GD+P +       AIAVDTETLGL P RDRLC+VQ+S GDG  D+++I      
Sbjct: 2   PHRLHCGDLPDDYV--PGPAIAVDTETLGLEPHRDRLCVVQISHGDGEADVVQIPKIGPE 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L D    KIFHY RFD+AVL++  GV   PV+CTK+ASRL RTYT++HGLKD 
Sbjct: 60  PVVLKRVLTDPAVTKIFHYARFDLAVLYHRLGVMPGPVYCTKVASRLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLG+ +SK QQSSDW AD L+  Q+ YAASDV+HLHALR +    L R  R+D+A +
Sbjct: 120 VRELLGVELSKQQQSSDWGADTLTPAQIDYAASDVLHLHALRAKLDAMLAREERTDMAEA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA LDLLGW+ VDI +HS
Sbjct: 180 CFAFLPTRARLDLLGWDEVDILAHS 204


>gi|126463573|ref|YP_001044687.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126105237|gb|ABN77915.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 204

 Score =  281 bits (721), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/205 (54%), Positives = 146/205 (71%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H  D+P   A      +A+DTET+GL PRRDRLC+VQLS GDG   +++I  GQ +
Sbjct: 2   TIHLHRNDLPDGLALG--PVVAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA L   FGVR  PV+CTKIAS++ RT+T++HGLK  
Sbjct: 60  APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G+++SK QQ+SDW A +L+D Q  YAASDV+HLH L+ +   +L R GR +LA  
Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179

Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206
           C +FL  RAELDL+GW+   DIF H
Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204


>gi|254450150|ref|ZP_05063587.1| 3'-5' exonuclease [Octadecabacter antarcticus 238]
 gi|198264556|gb|EDY88826.1| 3'-5' exonuclease [Octadecabacter antarcticus 238]
          Length = 203

 Score =  281 bits (720), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 108/204 (52%), Positives = 141/204 (69%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  +++ D+P       V  +A+D ET+GL P RDRLC+VQLS GDG   +I++A GQ  
Sbjct: 2   TNHLYQNDLPDGLDLGAV--VAIDCETMGLNPHRDRLCLVQLSGGDGNCHLIQVAGGQTT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA +   FG    PV+CTKIAS+L RTYT++HGLK+ 
Sbjct: 60  APNLCKVLADPQVLKLFHFGRFDIAAMLNAFGTVTAPVYCTKIASKLIRTYTDRHGLKNL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L+E L ++ISK QQ SDW AD LS  QL YAASDV++LH LR +   +L R  R+D+A +
Sbjct: 120 LQEFLRVDISKFQQQSDWGADQLSKAQLDYAASDVLYLHKLRDELNIRLARELRTDMAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA+LDL GW   DIFSH
Sbjct: 180 CFDFLPMRAQLDLAGWPEQDIFSH 203


>gi|49473901|ref|YP_031943.1| ribonuclease d [Bartonella quintana str. Toulouse]
 gi|49239404|emb|CAF25742.1| Ribonuclease d [Bartonella quintana str. Toulouse]
          Length = 206

 Score =  281 bits (719), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 131/207 (63%), Positives = 161/207 (77%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P       +DA+AVDTETLGL P RDRLC+VQLS GDGT DII+IA GQ
Sbjct: 1   MKEIRVHQGDLP-NLDNYQIDAVAVDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K+APNLV +L D+   KIFH+GRFD+A+L YTFGV    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  KSAPNLVKLLKDKAITKIFHFGRFDLAILAYTFGVMPDVVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+A+ LS  Q++YAASDV++LH LR  F E+L+R  R ++A
Sbjct: 120 EICCELLNVNISKQQQSSDWAAEILSRAQIEYAASDVLYLHRLRDIFEERLKREERENVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDLLGW  VDIF+HS
Sbjct: 180 KACFQFLPMRAKLDLLGWSEVDIFAHS 206


>gi|77464733|ref|YP_354237.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|77389151|gb|ABA80336.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
          Length = 204

 Score =  281 bits (719), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 110/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H  D+P          +A+DTET+GL PRRDRLC+VQLS GDG   +++I  GQ +
Sbjct: 2   TIHLHRNDLPDGLVLG--PVVAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA L   FGVR  PV+CTKIAS++ RT+T++HGLK  
Sbjct: 60  APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G+++SK QQ+SDW A +L+D Q  YAASDV+HLH L+ +   +L R GR +LA  
Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179

Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206
           C +FL  RAELDL+GW+   DIF H
Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204


>gi|73667429|ref|YP_303445.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394570|gb|AAZ68847.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 216

 Score =  280 bits (718), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 110/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            + VH+ D+P      + DA+A+DTET+GL+ RRDRLC+VQL+   G V +++ + G   
Sbjct: 14  PVFVHDCDLPNGL--NFEDAVAIDTETMGLVCRRDRLCLVQLADSSGNVHLVKFS-GNYQ 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+ RFDIAV+ Y  G+   P +CTKIAS+L RTYT+ HGLK+ 
Sbjct: 71  APNLVSVLSDPNIIKIFHFARFDIAVMRYYLGMWANPCYCTKIASKLVRTYTDHHGLKEL 130

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELLG+ ++K QQSSDW  + L+ EQL YAASDV++LHAL+ +    LQR  + +LA +
Sbjct: 131 CYELLGVKLNKMQQSSDWGRESLTSEQLNYAASDVIYLHALKSKLDAMLQRENKRELAAA 190

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGWENVDIFSHS
Sbjct: 191 CFKFLQTRAQLDLLGWENVDIFSHS 215


>gi|329888476|ref|ZP_08267074.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328847032|gb|EGF96594.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 204

 Score =  280 bits (718), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 108/205 (52%), Positives = 142/205 (69%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+  HEGD+P          +A+D+ET+GL  RRD LC+VQLS GDG   ++R+     +
Sbjct: 2   TVYFHEGDLPDGLDLG--PQVAIDSETMGLRFRRDPLCVVQLSSGDGNAHVVRLNRPAYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +L D K  KIFH+GRFDI +     GV  RPV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKRLLTDPKVLKIFHFGRFDIGMFDLHLGVETRPVYCTKIASKLARTYTDRHGLKDV 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            KEL G+++SKAQQSSDW A +LS  QL YAASDV++LHA+  +  E L R GR +LA +
Sbjct: 120 AKELAGVDMSKAQQSSDWGAAELSQAQLDYAASDVLYLHAIMNRLNEMLVREGRMELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  R+ LDL GW+ +DIF+H+
Sbjct: 180 CFDFLPVRSRLDLAGWDEIDIFAHA 204


>gi|121602332|ref|YP_989471.1| 3'-5' exonuclease domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614509|gb|ABM45110.1| 3'-5' exonuclease domain protein [Bartonella bacilliformis KC583]
          Length = 206

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 127/207 (61%), Positives = 160/207 (77%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P       VDA+A+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ
Sbjct: 1   MIDIRVHQGDLP-NLDNYCVDAVAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNLV +L D+   KIFH+GRFD+A+L +TFG+    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  NSAPNLVKLLADKAITKIFHFGRFDLAILAHTFGIMPDAVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+A+ LS  Q++YAASDV++LH L+  F E+L+R  R D+A
Sbjct: 120 EICSELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKSVFEERLKREEREDVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDLLGW  +DIF+HS
Sbjct: 180 KACFQFLPVRAKLDLLGWPEIDIFAHS 206


>gi|259417301|ref|ZP_05741220.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B]
 gi|259346207|gb|EEW58021.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B]
          Length = 204

 Score =  280 bits (717), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 110/207 (53%), Positives = 142/207 (68%), Gaps = 3/207 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M T  +++ D+P          +A+D ET+GL P RDRLC+VQ+S GDG   +++I+  Q
Sbjct: 1   MAT-HLYQNDLPDSVDLG--PVVAIDCETMGLNPHRDRLCVVQMSGGDGDAHLVQISKDQ 57

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             APNL  ML +    K+FHYGRFDIA L++ FG    PV+CTKIASRL RTYT++HGLK
Sbjct: 58  TEAPNLTSMLTNPDVLKLFHYGRFDIAALYHRFGALTAPVYCTKIASRLVRTYTDRHGLK 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +  ++LLG +ISK QQ SDW AD L+  Q+ YAASDV+HLH LR     +L R GRSDLA
Sbjct: 118 NLTQDLLGQDISKQQQMSDWGADTLTRAQMDYAASDVLHLHRLRGALDLRLAREGRSDLA 177

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C +FL  RA LDL GW + DIF+HS
Sbjct: 178 QACFDFLPTRARLDLAGWPDTDIFAHS 204


>gi|85709987|ref|ZP_01041052.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1]
 gi|85688697|gb|EAQ28701.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1]
          Length = 215

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/205 (51%), Positives = 140/205 (68%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+  HE D+PA         +AVDTET+GL+  RDRLC+VQ+S G G   ++R + G   
Sbjct: 6   TVHFHEEDLPAGV-LEGTGPLAVDTETMGLITHRDRLCVVQISDGSGDEHLVRFSPGSDY 64

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L DE R K++H+ RFD+A + Y  GV   PVFCTKIAS+L RTYT++HGLK+
Sbjct: 65  EAPNLSAILADESRVKLYHFARFDLAAIQYYLGVVAAPVFCTKIASKLVRTYTDRHGLKN 124

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
              ELLG +ISK QQSSDW   +L+D Q +YAASDV +LH LR +   +L+R GR ++A 
Sbjct: 125 LTDELLGESISKQQQSSDWGGPELNDAQREYAASDVRYLHRLRDELIVRLEREGRMEIAQ 184

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RA LD+ GW+  DIFSH
Sbjct: 185 ACFDFLPTRAALDIAGWDGRDIFSH 209


>gi|240849913|ref|YP_002971302.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
 gi|240267036|gb|ACS50624.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
          Length = 206

 Score =  279 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 126/207 (60%), Positives = 159/207 (76%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P        DAIA+DTETLGL P RDRLC+VQLS GDGT D+I+I+ GQ
Sbjct: 1   MAEIRVHQGDLP-NLDNYKTDAIAIDTETLGLQPHRDRLCVVQLSSGDGTADVIQISKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K+APNLV +L D    KIFH+GRFD+A+L +TFGV    +FCTKIAS+LTRTYT++HGLK
Sbjct: 60  KSAPNLVKLLGDNAVIKIFHFGRFDLAILAHTFGVMPEAIFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+A+ LS  Q++YAASDV++LH L++ F E+L+R  R  +A
Sbjct: 120 EICNELLNVNISKQQQSSDWAAETLSQAQIEYAASDVLYLHRLKVIFEERLRREERESVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA+LDLLGW  VDIF+HS
Sbjct: 180 KACFQFLPMRAKLDLLGWAEVDIFAHS 206


>gi|221640647|ref|YP_002526909.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
 gi|221161428|gb|ACM02408.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
          Length = 204

 Score =  279 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 110/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H  D+P          +A+DTET+GL PRRDRLC+VQLS GDG   +++I  GQ +
Sbjct: 2   TIHLHRSDLPDGLVLG--PVVAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTS 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA L   FGVR  PV+CTKIAS++ RT+T++HGLK  
Sbjct: 60  APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G+++SK QQ+SDW A +L+D Q  YAASDV+HLH L+ +   +L R GR +LA  
Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179

Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206
           C +FL  RAELDL+GW+   DIF H
Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204


>gi|332559626|ref|ZP_08413948.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
 gi|332277338|gb|EGJ22653.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
          Length = 204

 Score =  279 bits (716), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 110/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H  D+P          +A+DTET+GL PRRDRLC+VQLS GDG   +++I  GQ +
Sbjct: 2   TIHLHRNDLPDGLVLG--PVVAIDTETMGLDPRRDRLCVVQLSAGDGDAHLLQIERGQTS 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA L   FGVR  PV+CTKIAS++ RT+T++HGLK  
Sbjct: 60  APNLERLLTDPQVLKLFHFGRFDIAALKRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G+++SK QQ+SDW A +L+D Q  YAASDV+HLH L+ +   +L R GR +LA  
Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKDELEARLLREGRMELAQR 179

Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206
           C +FL  RAELDL+GW+   DIF H
Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204


>gi|315497170|ref|YP_004085974.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48]
 gi|315415182|gb|ADU11823.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48]
          Length = 206

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/205 (54%), Positives = 142/205 (69%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI  HEGD+P       V  +A+D+ET+GL   RD LC+VQLS GDG   ++R+     +
Sbjct: 2   TIHYHEGDLPNGLNLGAV--VAIDSETMGLRFGRDDLCVVQLSAGDGDAHVVRLNRPAYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +L DEK  K+FH+GRFDI +     GV   PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKALLTDEKVLKLFHFGRFDIGMFLLHLGVVTAPVYCTKIASKLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELL ++ISKAQQSSDW A  L+ EQL YAASDV+HLH LR +    L R GR++LA  
Sbjct: 120 VRELLSVDISKAQQSSDWGAQTLTPEQLAYAASDVLHLHTLREKLDTMLAREGRTELAQG 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  R +LDL GWE+ DIF+HS
Sbjct: 180 CFDFLPHRVKLDLAGWEDTDIFAHS 204


>gi|209542515|ref|YP_002274744.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530192|gb|ACI50129.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/205 (50%), Positives = 142/205 (69%), Gaps = 3/205 (1%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            +I +H GD+  +    +  +IAVDTE +GL P RDRLC+VQ+S GDG+  +++I  G  
Sbjct: 7   PSILLHRGDLADDVV--FHGSIAVDTEAMGLNPHRDRLCLVQISAGDGSAHLVQILPGTP 64

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           + PNL  ++ D    K+ H+ RFD+A+L ++ GV V PV CTKIAS+L RT+T +HGL  
Sbjct: 65  S-PNLARLMADPSITKLMHFARFDVAILQHSLGVTVAPVICTKIASKLVRTFTERHGLAQ 123

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             +ELLG+++SK QQ+SDW A +L+ EQ  YAASDV+HLHAL  +    L R GR DLA 
Sbjct: 124 LCRELLGVDLSKQQQTSDWGAPELTPEQKAYAASDVLHLHALWTKLEALLHREGRRDLAQ 183

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RA LDLLG+E+ DIF+H
Sbjct: 184 ACYDFLPTRARLDLLGYEDPDIFAH 208


>gi|49475064|ref|YP_033105.1| ribonuclease d [Bartonella henselae str. Houston-1]
 gi|49237869|emb|CAF27065.1| Ribonuclease d [Bartonella henselae str. Houston-1]
          Length = 206

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 128/207 (61%), Positives = 159/207 (76%), Gaps = 1/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT IRVH+GD+P       +DA+AVDTETLGL P RDRLC+VQLS GDGT D+I+IA GQ
Sbjct: 1   MTEIRVHQGDLP-NLDNYRIDAVAVDTETLGLQPHRDRLCVVQLSSGDGTADVIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           K+APNLV +L D    KIFH+GRFD+A+L +TFGV    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  KSAPNLVRLLSDRDITKIFHFGRFDLAILAHTFGVMPDVVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+A+ LS  Q++YAASDV++LH L+  F E+L+R  R  +A
Sbjct: 120 EICGELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKDIFEERLKREERESVA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C  FL  RA LDLLGW  +DIF+HS
Sbjct: 180 KACFQFLPMRANLDLLGWSEIDIFAHS 206


>gi|300021932|ref|YP_003754543.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523753|gb|ADJ22222.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
          Length = 205

 Score =  279 bits (714), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/205 (55%), Positives = 148/205 (72%), Gaps = 3/205 (1%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T I++H+GD+P      + + IA+DTET+GL P RDRLC+VQLS GDGT  +++      
Sbjct: 4   TKIKLHKGDLPTGLT--FPNGIAIDTETMGLNPHRDRLCLVQLSGGDGTAHLVKFDGKSY 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +APNL  +L D K  KIFH+ RFD+AVL +  GV   P++CTKIAS+L RTYT++HGLKD
Sbjct: 62  DAPNLKALLADPKSLKIFHFARFDVAVLEHYLGVVTSPIYCTKIASKLARTYTDRHGLKD 121

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            + E+LGI ISK QQSSDW A +LSD Q  YAA+DV+HLHAL+ +  E L R GR DLA 
Sbjct: 122 LVGEILGIEISKQQQSSDWGAAELSDSQRSYAANDVLHLHALKTRLDEMLARTGRQDLAK 181

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +   FL  RA+LDLLG+E+ DIF+H
Sbjct: 182 AAFGFLPIRAKLDLLGFED-DIFAH 205


>gi|126734481|ref|ZP_01750228.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126717347|gb|EBA14211.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 203

 Score =  278 bits (713), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/202 (50%), Positives = 141/202 (69%), Gaps = 2/202 (0%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +++ D+P          +A+D ET+GL P RDRLC++Q+S GDG   ++++  GQ  AP
Sbjct: 4   HLYQNDLPDGLDLG--PVVAIDCETMGLNPHRDRLCLIQMSGGDGDCHLVQVTPGQTAAP 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           NL  ML +    K+FH+GRFDIA L   FG    PV+CTKIAS+L RTYT++HGLK  L+
Sbjct: 62  NLCAMLENPDVLKLFHFGRFDIAALLNAFGALTAPVYCTKIASKLVRTYTDRHGLKTLLQ 121

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           +++GI+ISK QQ SDW A +L+D QL YAASDV++LH L+ +F   L R  R+D+A SC 
Sbjct: 122 DMVGIDISKHQQQSDWGAPNLTDAQLDYAASDVLYLHQLKEKFDVLLAREHRADVAQSCF 181

Query: 185 NFLMDRAELDLLGWENVDIFSH 206
           +FL  RA+LDL GW ++DIFSH
Sbjct: 182 DFLPTRAKLDLAGWPDIDIFSH 203


>gi|146278808|ref|YP_001168967.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
 gi|145557049|gb|ABP71662.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
          Length = 204

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 111/205 (54%), Positives = 145/205 (70%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +H  D+P       V  +A+DTET+GL PRRDRLC+VQLS GDG   +++I  GQ  
Sbjct: 2   TIHLHRNDLPDGLDLGRV--VAIDTETMGLDPRRDRLCVVQLSAGDGDAHLVQIERGQTR 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +  K+FH+GRFDIA L   FGVR  PV+CTKIAS++ RT+T++HGLK  
Sbjct: 60  APNLERLLTDPQVLKLFHFGRFDIAALQRAFGVRTEPVWCTKIASKMVRTFTDRHGLKYL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L EL+G+++SK QQ+SDW A +L+D Q  YAASDV+HLH L+ +   +L R GR +LA  
Sbjct: 120 LLELVGVDVSKQQQTSDWGAAELTDAQKDYAASDVLHLHRLKEELEARLLREGRMELAQR 179

Query: 183 CCNFLMDRAELDLLGWENV-DIFSH 206
           C +FL  RAELDL+GW+   DIF H
Sbjct: 180 CFDFLPTRAELDLMGWDEPNDIFHH 204


>gi|296115075|ref|ZP_06833717.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
 gi|295978412|gb|EFG85148.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
          Length = 215

 Score =  278 bits (712), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/207 (51%), Positives = 144/207 (69%), Gaps = 4/207 (1%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TI  H GD+P +    +  A+AVDTET+GL P RDRLC+VQLS GDG   ++++ AG  
Sbjct: 8   DTIHFHRGDLPHDVV--FSGAVAVDTETMGLNPHRDRLCLVQLSDGDGHAHLVQVPAGAT 65

Query: 62  --NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             + PN++ +L D    K+ H+ RFD+A+L YTFG+ V P  CTKIAS+L RTYT +HGL
Sbjct: 66  AADFPNMLAVLTDPSVTKLMHFARFDVAILQYTFGITVAPCICTKIASKLVRTYTERHGL 125

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
               +ELLG+ +SK QQSSDW A DL+ EQ+ YAASDV++LHAL  +    L R GR +L
Sbjct: 126 AHLCRELLGVELSKQQQSSDWGAPDLTPEQMTYAASDVLYLHALWARLEALLVREGRREL 185

Query: 180 ATSCCNFLMDRAELDLLGWENVDIFSH 206
           A +C +F+  RA LD+LG+E+ D+F+H
Sbjct: 186 AQACYDFMPTRARLDILGYEDPDLFAH 212


>gi|162147898|ref|YP_001602359.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786475|emb|CAP56057.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score =  278 bits (711), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 103/205 (50%), Positives = 142/205 (69%), Gaps = 3/205 (1%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            +I +H GD+  +    +  +IAVDTE +GL P RDRLC+VQ+S GDG+  +++I  G  
Sbjct: 7   PSILLHRGDLADDVV--FHGSIAVDTEAMGLNPHRDRLCLVQISAGDGSAHLVQILPGTP 64

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           + PNL  ++ D    K+ H+ RFD+A+L ++ GV V PV CTKIAS+L RT+T +HGL  
Sbjct: 65  S-PNLARLMADPSITKLMHFARFDVAILQHSLGVTVAPVICTKIASKLVRTFTERHGLAQ 123

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             +ELLG+++SK QQ+SDW A +L+ EQ  YAASDV+HLHAL  +    L R GR DLA 
Sbjct: 124 LCRELLGVDLSKQQQTSDWGAPELTPEQKAYAASDVLHLHALWTKLEVLLHREGRRDLAQ 183

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RA LDLLG+E+ DIF+H
Sbjct: 184 ACYDFLPTRARLDLLGYEDPDIFAH 208


>gi|304392222|ref|ZP_07374164.1| 3'-5' exonuclease [Ahrensia sp. R2A130]
 gi|303296451|gb|EFL90809.1| 3'-5' exonuclease [Ahrensia sp. R2A130]
          Length = 211

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 120/205 (58%), Positives = 154/205 (75%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR+H+ D+P    + Y D++A+DTETLGL PRRDRLC+VQLSPGDGT D+++I  GQ +
Sbjct: 9   TIRLHKNDLPD--LSNYSDSVAIDTETLGLRPRRDRLCVVQLSPGDGTADVVQIEKGQTS 66

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APN+  +LVD   +KI+HYGRFDIAVL++ FG      FCTKIASRLTRTYT++HGLK+ 
Sbjct: 67  APNIEKLLVDTNVQKIYHYGRFDIAVLYHAFGALSDNNFCTKIASRLTRTYTDRHGLKNL 126

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             EL+G+++SK QQSSDW+A++L+  Q  YAASDV+HLHALR    ++L R  R  LA  
Sbjct: 127 THELIGVDLSKVQQSSDWAAEELTKAQQAYAASDVLHLHALRDALLKRLAREDRQHLADE 186

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  R  LDL GWE+ DIF+HS
Sbjct: 187 CFKFLPTRCLLDLAGWEDTDIFAHS 211


>gi|254419186|ref|ZP_05032910.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3]
 gi|196185363|gb|EDX80339.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3]
          Length = 204

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 105/205 (51%), Positives = 143/205 (69%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+ +HEGD+P +        +A+D+ET+GL  RRD LC+VQLS GDG   ++R+     +
Sbjct: 2   TVYLHEGDLPDDLDLG--PDVAIDSETMGLRFRRDPLCVVQLSAGDGNAHVVRLNRPGYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +L D    KIFH+GRFDI +     GV  RPV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKRLLTDPAVTKIFHFGRFDIGMFLLHLGVETRPVYCTKIASKLARTYTDRHGLKDV 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E +G+++SKAQQSSDW A +L+  QL YAASDV++LHA R +    L R GR++LA  
Sbjct: 120 VRETVGVDLSKAQQSSDWGAAELTQAQLDYAASDVLYLHAARAKLDLMLAREGRAELAAQ 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  R+ LDL GW+ +DIF+HS
Sbjct: 180 CFDFLPTRSALDLAGWDEIDIFAHS 204


>gi|94495607|ref|ZP_01302187.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58]
 gi|94424995|gb|EAT10016.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58]
          Length = 205

 Score =  278 bits (711), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 109/205 (53%), Positives = 140/205 (68%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+  HE D+P    A     IAVDTET+GL+  RDRLC+VQ+S G G   ++R   G   
Sbjct: 2   TVHFHEEDLPVGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGKGDEHLVRFNPGSDY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D +R K++H+GRFDIA L +  G+   PV+CTKIASRL RTYT++HGLK+
Sbjct: 60  AAPNLKAVLADPERLKLYHFGRFDIAALRHYLGIVAAPVYCTKIASRLVRTYTDRHGLKE 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG +ISK QQSSDW    LSD Q  YAASDV  LH L+ +  ++L+R GR +LA 
Sbjct: 120 LVRELLGQDISKQQQSSDWGGPVLSDAQKDYAASDVRFLHQLKAELDKRLEREGRMELAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RAELDL GW   DIF+H
Sbjct: 180 ACFDFLPHRAELDLAGWPETDIFAH 204


>gi|260577298|ref|ZP_05845271.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
 gi|259020479|gb|EEW23802.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
          Length = 204

 Score =  277 bits (710), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 106/204 (51%), Positives = 143/204 (70%), Gaps = 3/204 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           + +++GD+PA         +A+DTET+GL PRRDRLC+VQLS GDG   +++IA GQ +A
Sbjct: 3   VHLYKGDLPAGLNLG--PVVAIDTETMGLDPRRDRLCLVQLSSGDGNAHLVQIARGQTSA 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D    K+FH+GRFDIA +   FGV   PV+CTKIA++L RT+T++HGLK  L
Sbjct: 61  PNLEKLLTDPSVLKLFHFGRFDIAAMKAAFGVVTAPVWCTKIAAKLVRTFTDRHGLKYLL 120

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +EL+G+++SK QQ+SDW ++ LSD Q  YAASDV++LH L  +    L R  R  LA  C
Sbjct: 121 QELVGVDVSKQQQTSDWGSETLSDAQKDYAASDVLYLHRLMAELERCLIRENRLALAQRC 180

Query: 184 CNFLMDRAELDLLGWENV-DIFSH 206
            +FL  RAELDL+GW+   DIF H
Sbjct: 181 FDFLPTRAELDLMGWDEPNDIFHH 204


>gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510]
 gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510]
          Length = 208

 Score =  277 bits (710), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 106/207 (51%), Positives = 143/207 (69%), Gaps = 3/207 (1%)

Query: 3   TIRVHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
            I +H+GD+P           + +A+DTET+GL P RDRLC+VQLS GDG V +++   G
Sbjct: 2   PIDLHDGDLPDGLDLAAGARDNCVAIDTETMGLNPHRDRLCLVQLSAGDGAVHLVQFRPG 61

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           +  APNL  +L D    K+FH+ RFD+AV+    GV  RPV+CTK+AS+L RT+T++HGL
Sbjct: 62  RYEAPNLKRLLTDPGVTKLFHFARFDVAVMKAYLGVDCRPVYCTKVASKLVRTFTDRHGL 121

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           KD  K+LLG+ ISK QQSSDW A +L+ +Q++YAASDV+HLH L+ +    L R GR+ L
Sbjct: 122 KDLCKDLLGVEISKQQQSSDWGAPELTTDQMKYAASDVLHLHDLKAKLDVMLAREGRTHL 181

Query: 180 ATSCCNFLMDRAELDLLGWENVDIFSH 206
           A +C +FL  R ELDL GWE  DI +H
Sbjct: 182 AQACFDFLPARGELDLGGWETPDILAH 208


>gi|307943000|ref|ZP_07658345.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
 gi|307773796|gb|EFO33012.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
          Length = 206

 Score =  277 bits (709), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 118/205 (57%), Positives = 147/205 (71%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TIR H+ D+         DA+AVDTETLGL   RDRLC+VQLSPGDG+ D+++I  G   
Sbjct: 2   TIRFHKNDLSDLTHYVSCDAVAVDTETLGLNLLRDRLCVVQLSPGDGSADVVQIEKGMTA 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D  R KIFHY RFD+A+L    G+ V PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 62  APNLTALLSDPARTKIFHYARFDVAILRQNLGIHVDPVWCTKIASKLCRTYTDRHGLKDI 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG++ISK QQSSDW+A+ L+D QL YAASDV+HLHAL+ +    L+R  R+ LA +
Sbjct: 122 TRELLGVDISKQQQSSDWAAEQLTDAQLAYAASDVLHLHALKEKLEFMLRREERTHLAEA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
              FL  RAELDL GW   DIF+HS
Sbjct: 182 SFGFLPTRAELDLKGWGETDIFAHS 206


>gi|114568663|ref|YP_755343.1| 3'-5' exonuclease [Maricaulis maris MCS10]
 gi|114339125|gb|ABI64405.1| 3'-5' exonuclease [Maricaulis maris MCS10]
          Length = 204

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/205 (53%), Positives = 143/205 (69%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+  H+GD+PA+        +AVDTETLGL   RD LC+VQLS GDG   ++++     +
Sbjct: 2   TVHYHKGDLPADIDLG--PIVAVDTETLGLSLTRDMLCVVQLSAGDGDAHVVQMNRADYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +L D   EKI H+ RFD+A++    GV + PVFCTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKRVLADPAVEKILHFARFDVAMVDKYLGVTMAPVFCTKIASKLVRTYTDRHGLKDV 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+G  ++K QQSSDW AD+LS  QL YAASDV+HLH LR +    L+R GR+DLA +
Sbjct: 120 TRELVGAEMNKQQQSSDWGADELSPAQLDYAASDVLHLHKLREKLGMMLEREGRTDLAKA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA+LDL GW  +DIF+HS
Sbjct: 180 CFDFLPTRAKLDLAGWPEIDIFAHS 204


>gi|83950822|ref|ZP_00959555.1| exonuclease, putative [Roseovarius nubinhibens ISM]
 gi|83838721|gb|EAP78017.1| exonuclease, putative [Roseovarius nubinhibens ISM]
          Length = 203

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/204 (50%), Positives = 145/204 (71%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T  V++GD+P +        +A+D ET+GL+P RDRLC+VQLS GDG   ++++A GQ+ 
Sbjct: 2   TNTVYKGDLPDDLDLG--PIVAIDCETMGLLPHRDRLCVVQLSGGDGHAHLVQVAKGQRT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L +    K+FH+GRFDIA +   FG    PV+CTKIAS+L RTYT++HGL++ 
Sbjct: 60  APNLVRLLENPDVLKLFHFGRFDIAAMLNAFGAVAAPVYCTKIASKLVRTYTDRHGLRNL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L++LLG++ISK QQSSDW   +LS  Q+ YAASDV++LH LR     +L R  R ++A +
Sbjct: 120 LQDLLGVDISKHQQSSDWGRAELSTAQIDYAASDVLYLHRLREALNVRLLREERMEMAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA+LDL GW + D+F+H
Sbjct: 180 CFDFLPMRAQLDLAGWPDDDLFAH 203


>gi|312114054|ref|YP_004011650.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
 gi|311219183|gb|ADP70551.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
          Length = 204

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/205 (53%), Positives = 145/205 (70%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI VH  D+P +    +  ++A+DTETLGL P RDRLC+VQLS GDG   +++   G  +
Sbjct: 2   TITVHLNDLPPDID--FGASVAIDTETLGLKPHRDRLCVVQLSAGDGNAHLVQFEKGHYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +LV+    KIFH+GRFDIAV+    GV+  PV+CTKIA++L RT+T +HGLKD 
Sbjct: 60  APNLTALLVNPAVLKIFHFGRFDIAVMQQYLGVKTGPVYCTKIAAKLVRTFTERHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG+ +SK QQ+SDW    L+ EQL YAASDV+HLHAL+ +    L R GR++LA +
Sbjct: 120 CRELLGVELSKQQQTSDWGQAKLTPEQLSYAASDVLHLHALKEKLDALLAREGRTELAAA 179

Query: 183 CCNFLMDRAELDLLGW-ENVDIFSH 206
           C  FL  RAELDL GW ++ D+F+H
Sbjct: 180 CFGFLPYRAELDLKGWHDDADVFNH 204


>gi|307293724|ref|ZP_07573568.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1]
 gi|306879875|gb|EFN11092.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1]
          Length = 205

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 108/205 (52%), Positives = 141/205 (68%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+  HE D+P    A     IAVDTET+GL+  RDRLC+VQ+S G G   ++R   G   
Sbjct: 2   TVHFHEEDLPQGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGQGDEHLVRFNPGSDY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D  R K++H+GRFDIA + +  G+   PV+CTKIASRL RTYT++HGLK+
Sbjct: 60  AAPNLRAVLADPARLKLYHFGRFDIAAIRHYMGIVAAPVYCTKIASRLVRTYTDRHGLKE 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG  +SK QQSSDW    LSD Q +YAASDV +LHAL+ +  ++L R GR +LA 
Sbjct: 120 LVRELLGQELSKVQQSSDWGGPVLSDPQKEYAASDVRYLHALKAELDKRLVREGRMELAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RAELDL GW  +DIF+H
Sbjct: 180 ACFDFLPHRAELDLAGWPEIDIFAH 204


>gi|332187924|ref|ZP_08389657.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17]
 gi|332012085|gb|EGI54157.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17]
          Length = 206

 Score =  276 bits (707), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 150/206 (72%), Gaps = 2/206 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+ +HE DIPA+  A    AIAVDTET+GL+  RDRLC+VQLS G     ++R +     
Sbjct: 2   TVHLHEEDIPADLFAPGA-AIAVDTETMGLITPRDRLCVVQLSDGGPDEHLVRFSPDSDY 60

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D  R K++H+GRFDIA + +  GV   PV+CTKIASRL RTYT++HGLK+
Sbjct: 61  AAPNLRALLADPARLKLYHFGRFDIAAIRHYLGVVAAPVYCTKIASRLIRTYTDRHGLKE 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLGI +SKAQQSSDW A +LSD Q +YAASDV +LH ++++  ++L+R GR +LA 
Sbjct: 121 LVRELLGIELSKAQQSSDWGAPELSDAQREYAASDVRYLHRMKVELDKRLEREGRMELAQ 180

Query: 182 SCCNFLMDRAELDLLGWENVDIFSHS 207
           +C +FL  RAELDL GW  +DIF+H+
Sbjct: 181 ACFDFLPARAELDLAGWPEIDIFAHA 206


>gi|294013112|ref|YP_003546572.1| ribonuclease D [Sphingobium japonicum UT26S]
 gi|292676442|dbj|BAI97960.1| ribonuclease D [Sphingobium japonicum UT26S]
          Length = 205

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/205 (53%), Positives = 140/205 (68%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+  HE D+P    A     IAVDTET+GL+  RDRLC+VQ+S G G   ++R   G   
Sbjct: 2   TVHFHEEDLPLGVLA--PGPIAVDTETMGLITPRDRLCVVQISDGQGDEHLVRFNPGSDY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL   L D  R K++H+GRFDIA + +  GV   PV+CTKIASRL RTYT++HGLK+
Sbjct: 60  AAPNLRAALADPARLKLYHFGRFDIAAIRHYLGVVAAPVYCTKIASRLVRTYTDRHGLKE 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG  +SK QQSSDW    LSD Q +YAASDV +LHAL+ +  ++L R GR +LA 
Sbjct: 120 LVRELLGQELSKVQQSSDWGGPVLSDAQKEYAASDVRYLHALKAELDKRLAREGRMELAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RAELDL GW  +DIF+H
Sbjct: 180 ACFDFLPHRAELDLAGWPEIDIFAH 204


>gi|197103637|ref|YP_002129014.1| ribonuclease D [Phenylobacterium zucineum HLK1]
 gi|196477057|gb|ACG76585.1| ribonuclease D [Phenylobacterium zucineum HLK1]
          Length = 205

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 115/207 (55%), Positives = 150/207 (72%), Gaps = 2/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MTT  VHEGD+PA+  A    ++A+D+ET+GL   RD LC+VQLS G G   ++++    
Sbjct: 1   MTTF-VHEGDLPADVLA-SASSVAIDSETMGLRLGRDPLCVVQLSDGGGDAHLVKLDRTT 58

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNL  +L D    KIFH+GRFDIA+ +   GV   PV+CTKIAS++ RTYT++HGLK
Sbjct: 59  YDAPNLKRLLTDPAVTKIFHFGRFDIAMFWLHLGVLTAPVYCTKIASKIARTYTDRHGLK 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  KELLG+++SKAQQSSDW A  LSDEQ+ YAASDV+HLHAL+ +  + L R GR  LA
Sbjct: 119 DISKELLGVDMSKAQQSSDWGAGKLSDEQVAYAASDVLHLHALKDRLQQMLVREGRDSLA 178

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C +FL  RA LD+ GWE+VDIF+HS
Sbjct: 179 QACFDFLPHRAVLDVAGWEDVDIFAHS 205


>gi|326388611|ref|ZP_08210204.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206862|gb|EGD57686.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
          Length = 205

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 106/204 (51%), Positives = 142/204 (69%), Gaps = 3/204 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-QKN 62
           + +HE D+PA+  A     +AVDTET+GL+  RDRLC+VQ+S G G   ++R A G   +
Sbjct: 3   VYLHEEDLPADVLA--PGIVAVDTETMGLVTTRDRLCVVQISDGKGDEHLVRFAPGSTYD 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +R K+FH+ RFD+A + Y  GV   PVFCTKIAS+L RTYT++HGLK+ 
Sbjct: 61  APNLKAVLADPERLKLFHFARFDLAAIHYYLGVMATPVFCTKIASKLVRTYTDRHGLKEL 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++EL G  ISK QQSSDW   +LSD QL+YAASDV +LH       ++L R GR+++A +
Sbjct: 121 VRELAGKEISKQQQSSDWGGANLSDAQLEYAASDVRYLHTCHAVLVDRLAREGRAEIAQA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA LD+ GW + DIFSH
Sbjct: 181 CFDFLPTRALLDIAGWADRDIFSH 204


>gi|254292595|ref|YP_003058618.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
 gi|254041126|gb|ACT57921.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
          Length = 204

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/204 (50%), Positives = 141/204 (69%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I+ HEGD+P       +  +AVDTE +GL   RD+LC+VQLS G G   ++R+     + 
Sbjct: 3   IKYHEGDLPNGLKLGAI--LAVDTEAMGLEFHRDQLCVVQLSDGTGDEHVVRLDRKTFDC 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  ++ D K  KIFH+ RFD+A++    G+   P+FCTKIAS+L RTYT++HGLKD  
Sbjct: 61  PNLKALMSDTKVLKIFHFARFDVAMMKKWLGIECAPIFCTKIASKLARTYTDRHGLKDVS 120

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +EL+G ++SKAQQSSDW AD LS+ QL YAASDV++LH +R +    L+R GR +LA +C
Sbjct: 121 RELVGADMSKAQQSSDWGADSLSEAQLAYAASDVLYLHEIREKLILMLEREGRMELAQAC 180

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
            +FL  RA+LDL GW   DIF+HS
Sbjct: 181 FDFLPKRADLDLAGWPETDIFAHS 204


>gi|88608093|ref|YP_506413.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600262|gb|ABD45730.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 206

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/206 (52%), Positives = 143/206 (69%), Gaps = 2/206 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M    ++EGD+PA+ A    DAIA+DTE++GL+ RRDRLC+VQLS GDGT  ++R     
Sbjct: 1   MNKYYIYEGDVPADFA--PSDAIAIDTESMGLVNRRDRLCLVQLSTGDGTAHLVRFNGTD 58

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +AP L  +LVD    KIFH+ RFDIA+L +  GV     +CTKIASRL RTYT+ H LK
Sbjct: 59  YSAPRLKSLLVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLK 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   +LLG+ ++K +QSSDW +  L+ EQ+ YAASDV++LHA++      L+R  R +LA
Sbjct: 119 ELCLDLLGVRLNKGKQSSDWGSTSLTREQMSYAASDVLYLHAIKEALDVMLKREKRIELA 178

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C  FL  RAELDLLGWEN DIFSH
Sbjct: 179 RACFQFLPYRAELDLLGWENQDIFSH 204


>gi|295691424|ref|YP_003595117.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
 gi|295433327|gb|ADG12499.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
          Length = 205

 Score =  275 bits (705), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/207 (52%), Positives = 141/207 (68%), Gaps = 2/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M    VHEGD+P    A     IA+D+ET+GL   RD LC+VQLS GDG   ++R++   
Sbjct: 1   MANF-VHEGDLPDGVFA-GASIIAIDSETMGLRLGRDPLCVVQLSSGDGDAHVVRLSRPD 58

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            + PNL  +L D    K+FH+GRFDIA+     GV   PV+CTKIAS+L RTYT++HGLK
Sbjct: 59  YDCPNLKALLTDPAILKLFHFGRFDIAMFQLHLGVVTAPVYCTKIASKLARTYTDRHGLK 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  +ELLG+ +SKAQQSSDW +  LS +Q+ YAASDV+HLH LR +    L+R GR  LA
Sbjct: 119 DVTRELLGVELSKAQQSSDWGSASLSADQVAYAASDVLHLHGLRQKLNAMLEREGRMALA 178

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +  ++L  RA LDL GWE+VDIF+HS
Sbjct: 179 QAAFDYLPHRASLDLAGWEDVDIFAHS 205


>gi|83944937|ref|ZP_00957303.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633]
 gi|83851719|gb|EAP89574.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633]
          Length = 204

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/205 (50%), Positives = 138/205 (67%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI  H GD+P          +A+DTET GL   RD LC+VQLS GDG   I++      +
Sbjct: 2   TIHFHRGDLPDGLDLG--KRVAIDTETQGLSLVRDGLCLVQLSAGDGEAHIVQPDRATYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +L D   EK+ H+ RFD+A++    GV + PVFCTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKALLADTGVEKLLHFARFDLAIIERDLGVTMTPVFCTKIASKLVRTYTDRHGLKDV 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +E+ G+ +SK QQSSDW+A DLS+ QL YAASDV++LHA+    T  L+R GR ++A +
Sbjct: 120 CREIAGVELSKQQQSSDWAAQDLSEAQLNYAASDVLYLHAIADGLTAMLEREGRMEMARA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA LDL+GW+  DIF+HS
Sbjct: 180 CFDFLPSRARLDLMGWDETDIFAHS 204


>gi|148555811|ref|YP_001263393.1| 3'-5' exonuclease [Sphingomonas wittichii RW1]
 gi|148501001|gb|ABQ69255.1| 3'-5' exonuclease [Sphingomonas wittichii RW1]
          Length = 205

 Score =  275 bits (704), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/205 (52%), Positives = 142/205 (69%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+ +H+ D+PA+        +AVDTET+GL+  RDRLC+VQ+S G G   ++R A G   
Sbjct: 2   TVHLHQEDLPADAL--GPGPVAVDTETMGLITPRDRLCLVQISDGRGDEHLVRFAPGSDY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L D  R K++H+ RFD+A + +  GV   PV+CTK ASRL RTYT++HGLK+
Sbjct: 60  AAPNLRAVLADPARLKLYHFARFDLAAIRHYIGVMAAPVYCTKTASRLIRTYTDRHGLKE 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG  +SK QQSSDW A DLS+ Q  YAASDV +LHA+R    E+L R GR+ LA 
Sbjct: 120 LVRELLGQEVSKQQQSSDWGAPDLSEAQKDYAASDVRYLHAMRTILDERLAREGRTALAQ 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RAELDL GW  +DIF+H
Sbjct: 180 ACFDFLPARAELDLAGWPEIDIFAH 204


>gi|83591355|ref|YP_425107.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170]
 gi|83574269|gb|ABC20820.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 206

 Score =  274 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 108/205 (52%), Positives = 134/205 (65%), Gaps = 3/205 (1%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TI  H GD+P+     +   IAVDTET+GL P RDRLC+VQLS GD    ++ +     
Sbjct: 5   PTIHYHRGDLPSGLT--FPQGIAVDTETMGLNPHRDRLCVVQLSGGDNIAHVVHLNR-DL 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            AP L  +L D    KI H+GRFDIA + +  GV   PV+CTKIAS+L RT T+ HGLK 
Sbjct: 62  QAPVLASLLGDPSVLKIMHFGRFDIASIHHGLGVLCEPVYCTKIASKLCRTNTDSHGLKA 121

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             K+LLG+++SK QQ+SDW A+ LS EQL YAASDV++LHAL+ +    L R GR+ LA 
Sbjct: 122 LCKDLLGVDLSKHQQTSDWGAESLSPEQLTYAASDVLYLHALKARLDGLLAREGRTTLAE 181

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
            C  FL  RA LDL GWE  DIFSH
Sbjct: 182 GCFRFLPTRALLDLAGWEEPDIFSH 206


>gi|241760851|ref|ZP_04758940.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753179|ref|YP_003226072.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283856222|ref|YP_162013.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374470|gb|EER63931.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552542|gb|ACV75488.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283775217|gb|AAV88902.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 209

 Score =  274 bits (703), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/205 (51%), Positives = 141/205 (68%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           T+  HE D+P +  +    A+AVDTET+GL+  RDRLC+VQ+S G G   ++R A     
Sbjct: 6   TVYFHEEDLPKDALSE--GAVAVDTETMGLITHRDRLCVVQISDGKGDQHLVRFAPDSDY 63

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +APNL  +L D  R KI+H+GRFDIA + Y  GV   PV+CTKIAS+L RTYT++HGLK+
Sbjct: 64  SAPNLKAVLSDPNRLKIYHFGRFDIAAILYYLGVMAAPVYCTKIASKLVRTYTDRHGLKE 123

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ELLG +ISK QQ SDW  + LSD Q +YAASDV  LH L+ +   +L+R  R +LA 
Sbjct: 124 LVRELLGQDISKQQQCSDWGGEKLSDAQREYAASDVRFLHGLKEKLDIRLKREKREELAQ 183

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +FL  RA+LD+ GW   DIF+H
Sbjct: 184 ACFDFLPTRAKLDIAGWSETDIFAH 208


>gi|114797270|ref|YP_758935.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
 gi|114737444|gb|ABI75569.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
          Length = 204

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 101/207 (48%), Positives = 141/207 (68%), Gaps = 3/207 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I +H+GD+P   +      IAVDTE +GL   RD L +VQ+S GDGT  ++++    
Sbjct: 1   MNQITLHKGDLPEGLSLG--PVIAVDTEAMGLNAMRDNLTLVQVSSGDGTAHLVQLTR-D 57

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            + PNL  +L D K  KIFH+ RFD+ ++    G+   P++CTKIASRL RTYT++HGLK
Sbjct: 58  YDCPNLKALLTDPKVLKIFHFARFDVVMMKRWMGITCAPIWCTKIASRLARTYTDRHGLK 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  +E+ G+++SKAQQSSDW  D L+D Q+QYAASDV++LH ++      L+R GR +LA
Sbjct: 118 DVAREVAGVDMSKAQQSSDWGQDKLTDAQIQYAASDVLYLHQIKAGLEAMLEREGRLELA 177

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +C +FL  RA+LDL GW + DIF+HS
Sbjct: 178 QACFDFLPIRADLDLAGWPDEDIFAHS 204


>gi|57239514|ref|YP_180650.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579496|ref|YP_197708.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58617549|ref|YP_196748.1| putative ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|57161593|emb|CAH58521.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58417161|emb|CAI28274.1| Probable ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58418122|emb|CAI27326.1| Probable ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 205

 Score =  274 bits (702), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 104/205 (50%), Positives = 141/205 (68%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            I VH+ D+P      + + +AVDTET+GL+ RRDRLC+VQ+S  +G V +++  + +  
Sbjct: 2   PIFVHDYDLPDGV--EFGNTVAVDTETMGLVCRRDRLCLVQMSGSNGNVHLVKFPSTEYQ 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           A NL  +L D    KIFH+ RFDI  + Y  G+   P +CTKIAS+L RTYT+ HGLK+ 
Sbjct: 60  ASNLKKILSDLSITKIFHFARFDITAIRYYLGIWAIPCYCTKIASKLARTYTDHHGLKEL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELLGI ++K QQSSDW  + L+ EQL YAASDV+HLHAL+ +    L+R  + +LA S
Sbjct: 120 CNELLGIKLNKVQQSSDWGKEVLTSEQLNYAASDVIHLHALKSKLDAMLERENKQELAKS 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  R +LDLLGW+NVDIFSH+
Sbjct: 180 CFDFLPTRVQLDLLGWDNVDIFSHA 204


>gi|329847152|ref|ZP_08262180.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
 gi|328842215|gb|EGF91784.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
          Length = 206

 Score =  274 bits (701), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 111/205 (54%), Positives = 143/205 (69%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+  HEGD+PA        +IA+D+ET+GL   RD LC+VQLS GDG   ++R+     +
Sbjct: 2   TVFYHEGDLPAGLDLG--KSIALDSETMGLRFGRDDLCVVQLSAGDGHAHVVRLNRPAYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +LVD    K+FHYGRFDI +     GV   PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKALLVDPSVLKLFHYGRFDIGMFALHLGVDTSPVYCTKIASKLARTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+G+++SKAQQSSDW A  L+ EQL YAASDV+HLHAL+ +    L R GRS LA +
Sbjct: 120 SRELVGVDMSKAQQSSDWGAATLTPEQLAYAASDVLHLHALKDKLDAMLAREGRSALAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  R +LDL GWE+ DIF+HS
Sbjct: 180 CFDFLPQRVKLDLAGWEDCDIFAHS 204


>gi|296282123|ref|ZP_06860121.1| 3'-5' exonuclease [Citromicrobium bathyomarinum JL354]
          Length = 205

 Score =  274 bits (701), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 109/204 (53%), Positives = 143/204 (70%), Gaps = 3/204 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-N 62
           +  HE D+P    A    A+AVDTET+GL+ RRDRLC+VQ+S G G   ++R       +
Sbjct: 3   VYFHEEDLPEGVLAE--GAVAVDTETMGLITRRDRLCLVQISDGKGDEHLVRFGVDSSFD 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D  R K++H+GRFD+A + Y  GV   PVFCTKIAS+LTRTYT++HGLK  
Sbjct: 61  APNLKAVLADPARTKLYHFGRFDLAAIEYWLGVTAAPVFCTKIASKLTRTYTDRHGLKML 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + ELLG +ISK QQSSDW A  ++D Q +YAASDV +LH LR  F E+L R GR+++A +
Sbjct: 121 VSELLGEDISKQQQSSDWGAPKINDAQREYAASDVRYLHRLRDIFEERLAREGRTEIAQA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA LD++GW + DIFSH
Sbjct: 181 CFDFLPTRARLDIIGWPDTDIFSH 204


>gi|319406582|emb|CBI80224.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 206

 Score =  274 bits (701), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 129/206 (62%), Positives = 160/206 (77%), Gaps = 1/206 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P       VD+IA+DTETLGL P RDRLC+VQLSPGDGT DII+IA GQ
Sbjct: 1   MAEIRVHQGDLP-NLDNYCVDSIAIDTETLGLQPHRDRLCVVQLSPGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNLV +L D+   KIFH+GRFD+A+L +TFGV    VFCTK+AS+LTRTYT++HGLK
Sbjct: 60  NSAPNLVTLLEDKTITKIFHFGRFDLAILAHTFGVMPDAVFCTKLASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+AD LS  Q++YAASDV++LH L+  F E+L+R  R D+A
Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C  FL  RA+LDLLGW  VDIF+H
Sbjct: 180 KACFQFLPVRAKLDLLGWSEVDIFAH 205


>gi|85375259|ref|YP_459321.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594]
 gi|84788342|gb|ABC64524.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594]
          Length = 206

 Score =  274 bits (701), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 106/205 (51%), Positives = 140/205 (68%), Gaps = 2/205 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-N 62
           +  HE D+PA   A     +AVDTET+GL+ RRDRLCIVQ+S G     ++R A      
Sbjct: 3   VHFHEEDLPAGVLAGDAP-LAVDTETMGLVTRRDRLCIVQISDGGEDEHLVRFAPDSDYA 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D  R K++H+ RFD+A + +  GV   PVFCTKIAS+LTRTYT++HGLK+ 
Sbjct: 62  APNLKALLADTNRVKLYHFARFDLAAIEHYLGVTAAPVFCTKIASKLTRTYTDRHGLKNL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLG N+SK QQSSDW   D+++ Q  YAASDV +LH +R     +L+R GR+++A +
Sbjct: 122 VEELLGENLSKQQQSSDWGGADINEAQRDYAASDVRYLHRMREILITRLEREGRTEMAQA 181

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA LDL GWE  DIF HS
Sbjct: 182 CFDFLPTRARLDLAGWEEHDIFHHS 206


>gi|87201263|ref|YP_498520.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444]
 gi|87136944|gb|ABD27686.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444]
          Length = 205

 Score =  273 bits (700), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 108/204 (52%), Positives = 141/204 (69%), Gaps = 3/204 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           + +HE D+P    A    A+AVDTET+GL+  RDRLC+VQ+S G G   ++R + G   A
Sbjct: 3   VFLHEEDLPEGALA--PGAVAVDTETMGLITPRDRLCVVQISDGRGDEHLVRFSPGSAFA 60

Query: 64  -PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  +L D +R K++H+ RFD+A + +  GV   PVFCTKIAS+L RTYT++HGLKD 
Sbjct: 61  APNLKAVLADPERLKLYHFARFDLAAIEHYLGVVAAPVFCTKIASKLVRTYTDRHGLKDL 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLG  ISK QQSSDW A  L+D Q +YAASDV HLHA+     E+L+R GR+ +A +
Sbjct: 121 VRELLGKEISKQQQSSDWGAPTLTDAQQEYAASDVRHLHAMHTILVERLEREGRTAMAQA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C +FL  RA LDL GW   DIFSH
Sbjct: 181 CFDFLPMRARLDLAGWAERDIFSH 204


>gi|319403664|emb|CBI77249.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 206

 Score =  273 bits (700), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 128/206 (62%), Positives = 159/206 (77%), Gaps = 1/206 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IRVH+GD+P       VD+IA+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ
Sbjct: 1   MAEIRVHQGDLP-NLDNYCVDSIAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNLV +L D+   KIFH+GRFD+A+L +TFGV    VFCTK+AS+LTRTYT++HGLK
Sbjct: 60  NSAPNLVTLLEDKTITKIFHFGRFDLAILAHTFGVMPDAVFCTKLASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+AD LS  Q++YAASDV++LH L+  F E+L+R  R D+A
Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C  FL  RA+LDLLGW  VDIF+H
Sbjct: 180 KACFQFLPVRAKLDLLGWSEVDIFAH 205


>gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
 gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
          Length = 217

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/208 (50%), Positives = 140/208 (67%), Gaps = 7/208 (3%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-- 61
           I++H+ D+P      +   +A+DTET+GL PRRDRLC+VQLS GDG    ++I       
Sbjct: 12  IKLHKHDLPDGID--FGPVVAIDTETMGLDPRRDRLCLVQLSAGDGNAHCVQIIPESLGG 69

Query: 62  ---NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              + PNL  +L      K+FH+ RFD+A+L    G+   PV CTKIA++L RT+T++HG
Sbjct: 70  RGADCPNLKALLTRPDVVKLFHFARFDVAILRAALGIECAPVRCTKIAAKLVRTFTDRHG 129

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           LKD  +ELLG+ ISK QQSSDW A +L+ EQL YAASDV+HLHAL  +    L+R GR +
Sbjct: 130 LKDLCRELLGVEISKQQQSSDWGAPELTPEQLAYAASDVLHLHALWAKLEGLLRREGRLE 189

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA SC  FL  R +LDLLG+E+ DIFSH
Sbjct: 190 LAESCFRFLPARGQLDLLGYEDPDIFSH 217


>gi|326403860|ref|YP_004283942.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
 gi|325050722|dbj|BAJ81060.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
          Length = 218

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/210 (50%), Positives = 140/210 (66%), Gaps = 7/210 (3%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TI +H  D+P          +AVDTET+GL PRRDRLC+VQLS GD +  +++I     
Sbjct: 10  ATIHIHRHDLPDGLDLG--PVVAVDTETMGLDPRRDRLCLVQLSAGDNSAHLVQIVPPAL 67

Query: 62  -----NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                + PNL  +L      K+FH+ RFD+A+L++  GV   PV CTKIAS+L RTYT++
Sbjct: 68  GGRGADCPNLKRLLEHPGVTKLFHFARFDLAMLYHALGVTTAPVICTKIASKLVRTYTDR 127

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           HGLKD  ++L+GI ISK QQ+SDW + +LS EQ  YAASDV+HLHA+  +    L R GR
Sbjct: 128 HGLKDLCRDLVGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWARLEALLVREGR 187

Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206
            +LA +C  FL  RA+LDLLG+E+ DIFSH
Sbjct: 188 RELADACYRFLPARAKLDLLGFEDPDIFSH 217


>gi|302381884|ref|YP_003817707.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
 gi|302192512|gb|ADL00084.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
          Length = 204

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 107/205 (52%), Positives = 144/205 (70%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+ +HEGD+P +        +AVD+ET+GL  RRD LC+VQLS GDG   ++R++    +
Sbjct: 2   TVYLHEGDLPDDLDLG--PEVAVDSETMGLRFRRDPLCVVQLSSGDGDAHVVRLSRPDYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            PNL  ++ D    KIFH+GRFDIA++    GV   PV+CTKIAS+L RTYT++HGLKD 
Sbjct: 60  CPNLKRLMADRDVLKIFHFGRFDIAMVELHLGVETGPVYCTKIASKLARTYTDRHGLKDV 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +E+ GI++SKAQQSSDW A +LS  QL YAASDV+HLH +  +  E L R GR +LA +
Sbjct: 120 AREMAGIDLSKAQQSSDWGAAELSQAQLDYAASDVLHLHVIMRRLNEMLVREGRMELAQA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA LDL GW+ +DIF+H+
Sbjct: 180 CFDFLPVRARLDLRGWDEMDIFAHT 204


>gi|84514850|ref|ZP_01002213.1| exonuclease, putative [Loktanella vestfoldensis SKA53]
 gi|84511009|gb|EAQ07463.1| exonuclease, putative [Loktanella vestfoldensis SKA53]
          Length = 203

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/206 (50%), Positives = 136/206 (66%), Gaps = 3/206 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M     H  D+P          +A+D ET+GL P RDRLC++Q+S GDG   +++++ GQ
Sbjct: 1   MANFLYH-NDLPDGLNLG--PVVAIDCETMGLNPHRDRLCLIQMSGGDGDCHLVQVSKGQ 57

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             APNL  ML D    K+FH+GRFDIA L   FGV   PV+CTKIAS+L RTYT++HGLK
Sbjct: 58  AGAPNLCAMLTDPAVLKLFHFGRFDIAALLNAFGVVTAPVYCTKIASKLVRTYTDRHGLK 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             L+++LGI+ISK QQ SDW A  L+  QL YAASDV++LH L+  F   LQR  R+ +A
Sbjct: 118 VLLQDMLGIDISKHQQQSDWGAPKLTPAQLDYAASDVLYLHQLKAAFDVLLQREDRTAVA 177

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C +FL  RA LDL GW   DIF+H
Sbjct: 178 KACFDFLPTRAALDLHGWPETDIFTH 203


>gi|167648909|ref|YP_001686572.1| 3'-5' exonuclease [Caulobacter sp. K31]
 gi|167351339|gb|ABZ74074.1| 3'-5' exonuclease [Caulobacter sp. K31]
          Length = 205

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 111/207 (53%), Positives = 141/207 (68%), Gaps = 2/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M    +HEGD+P    A    AIA+D+ET+GL   RD LC+VQLS GDG   ++R+    
Sbjct: 1   MANF-LHEGDLPDGVFAGAA-AIAIDSETMGLRLGRDPLCVVQLSSGDGDAHVVRLDRAT 58

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +APNL  +L D    K+FH+GRFDIA+     GV   PV+CTKIAS+L RTYT++HGLK
Sbjct: 59  YDAPNLKRLLTDPSVVKLFHFGRFDIAMFLLHLGVMTAPVYCTKIASKLARTYTDRHGLK 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  +EL+G+ +SK QQSSDW A  LS EQL YAASDV+HLHALR +    L R GR  LA
Sbjct: 119 DVTRELVGVELSKVQQSSDWGAATLSPEQLAYAASDVLHLHALRERLNAMLVREGRMQLA 178

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
            +  ++L  RA LDL GWE+VDIF+H+
Sbjct: 179 QAAFDYLPHRAALDLAGWEDVDIFAHT 205


>gi|148260666|ref|YP_001234793.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
 gi|146402347|gb|ABQ30874.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
          Length = 218

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 106/210 (50%), Positives = 139/210 (66%), Gaps = 7/210 (3%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TI +H  D+P          +AVDTET+GL PRRDRLC+VQLS GD +  +++I     
Sbjct: 10  ATIHIHRHDLPDGLDLG--PVVAVDTETMGLDPRRDRLCLVQLSAGDNSAHLVQIVPPAL 67

Query: 62  -----NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                + PNL  +L      K+FH+ RFD+A+L +  GV   PV CTKIAS+L RTYT++
Sbjct: 68  GGRGADCPNLKRLLEHPGVTKLFHFARFDLAMLHHALGVTTAPVICTKIASKLVRTYTDR 127

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           HGLKD  ++L+GI ISK QQ+SDW + +LS EQ  YAASDV+HLHA+  +    L R GR
Sbjct: 128 HGLKDLCRDLVGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWARLEALLVREGR 187

Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206
            +LA +C  FL  RA+LDLLG+E+ DIFSH
Sbjct: 188 RELADACYRFLPARAKLDLLGFEDPDIFSH 217


>gi|330993409|ref|ZP_08317344.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
 gi|329759439|gb|EGG75948.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
          Length = 215

 Score =  272 bits (696), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 106/205 (51%), Positives = 143/205 (69%), Gaps = 4/205 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I  H GD+PA+    +   +AVDTET+GL P RDRLC+VQLS GDG   ++++      A
Sbjct: 10  IHFHRGDLPADVT--FTGMVAVDTETMGLNPHRDRLCLVQLSAGDGQAHLVQVPPHATAA 67

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
             PNLV +L D +  KI H+ RFD+A+L +TF V V P  CTK+AS+L RTYT++HGL +
Sbjct: 68  GFPNLVRVLTDARVPKIMHFARFDVAILQHTFNVTVAPCICTKVASKLVRTYTDRHGLAN 127

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             +ELLG+ +SK QQSSDW A DL+ EQL YAASDV++LHAL  +    L R GR D+A 
Sbjct: 128 LCRELLGVELSKQQQSSDWGATDLTREQLCYAASDVLYLHALWERLEALLHREGRRDVAQ 187

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C +F+  RA LD+LG+++ DIF+H
Sbjct: 188 ACFDFMPARARLDILGYQDPDIFAH 212


>gi|254796888|ref|YP_003081725.1| ribonuclease D [Neorickettsia risticii str. Illinois]
 gi|254590124|gb|ACT69486.1| ribonuclease D [Neorickettsia risticii str. Illinois]
          Length = 216

 Score =  271 bits (695), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 107/205 (52%), Positives = 141/205 (68%), Gaps = 2/205 (0%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
               ++EGD+PA+      DAIAVDTE++GL+ RRDRLC+VQLS GDGT  ++R      
Sbjct: 12  NKYYIYEGDVPADFPL--SDAIAVDTESMGLVNRRDRLCLVQLSTGDGTAHLVRFNGTDY 69

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +AP L  ++VD    KIFH+ RFDIA+L +  GV     +CTKIASRL RTYT+ H LK+
Sbjct: 70  SAPRLKSLIVDPAVIKIFHFARFDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLKE 129

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
              +LLG+ ++K +QSSDW +  L+ EQ+ YAASDV++LHA++      L+R  R +LA 
Sbjct: 130 LCSDLLGVRLNKGKQSSDWGSASLTREQMSYAASDVLYLHAIKEALDVMLKREKRIELAQ 189

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
           +C  FL  RAELDLLGWEN DIFSH
Sbjct: 190 ACFQFLPYRAELDLLGWENQDIFSH 214


>gi|68171372|ref|ZP_00544766.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657845|ref|YP_507797.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67772422|gb|AAY79412.1| ribonuclease D [Ehrlichia chaffeensis]
 gi|67999197|gb|EAM85853.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599302|gb|ABD44771.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 204

 Score =  271 bits (694), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/205 (51%), Positives = 141/205 (68%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            + VH+ D+P     ++ + +AVDTET+GL+ RRD+LC+VQL   +G   +++   G   
Sbjct: 2   PVFVHDCDLPNGL--KFENTVAVDTETMGLVCRRDKLCVVQLCDSNGETHLVKFL-GSYQ 58

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNLV +L D    KIFH+ RFDIAV+ Y  GV   P +CTKIAS+L RTYT+ HGLK+ 
Sbjct: 59  APNLVSVLSDSSITKIFHFARFDIAVIRYYLGVWATPCYCTKIASKLVRTYTDHHGLKEL 118

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             ELL + ++K QQSSDW  + L+ EQL YAASDV++LHAL+ +    LQR  + +LA S
Sbjct: 119 CYELLNVKLNKMQQSSDWGKETLTSEQLNYAASDVIYLHALKNKLDAMLQRENKQELAAS 178

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C  FL  RA+LDLLGW+ VDIFSH+
Sbjct: 179 CFGFLPTRAQLDLLGWDGVDIFSHA 203


>gi|16127833|ref|NP_422397.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|221236653|ref|YP_002519090.1| ribonuclease D [Caulobacter crescentus NA1000]
 gi|13425349|gb|AAK25565.1| ribonuclease D, putative [Caulobacter crescentus CB15]
 gi|220965826|gb|ACL97182.1| ribonuclease D [Caulobacter crescentus NA1000]
          Length = 205

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 110/207 (53%), Positives = 142/207 (68%), Gaps = 2/207 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M    VHEGD+P    A   + IA+D+ET+GL  RRD LC+VQLS GDG   ++R++   
Sbjct: 1   MANF-VHEGDLPDGVFAD-AEIIAIDSETMGLRLRRDPLCVVQLSAGDGDAHVVRLSRPD 58

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            + PNL  +L + K  K+FH+GRFDIA+     GV   PV+CTKIAS+L RTYT++HGLK
Sbjct: 59  YDCPNLKALLTNPKVLKLFHFGRFDIAMFELHLGVVTAPVYCTKIASKLARTYTDRHGLK 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  +ELLG+ +SK QQSSDW A  LS +Q+ YAASDV+HLH LRL+    L+R GR  LA
Sbjct: 119 DVTRELLGVELSKVQQSSDWGAPSLSVDQVAYAASDVLHLHGLRLKLNAMLEREGRMALA 178

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
               ++L  RA LDL GWE +DIF+HS
Sbjct: 179 QHAFDYLPHRASLDLAGWEEMDIFAHS 205


>gi|269958513|ref|YP_003328300.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
 gi|269848342|gb|ACZ48986.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
          Length = 204

 Score =  271 bits (693), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/203 (51%), Positives = 141/203 (69%), Gaps = 3/203 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           + VH  D+P        + +AVDTET+GL+ RRDR+C+VQLS GDG   +++ + G  +A
Sbjct: 3   VFVHNNDLPDGLDLG--NVVAVDTETMGLVCRRDRVCLVQLSSGDGDAHLVKFS-GDYSA 59

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  ++ +    KIFH+ RFD+A + + FG+   P +CTKIASRL RTYTN HGLKD  
Sbjct: 60  PNLRRIVSNPDIMKIFHFARFDVAAIRHCFGMWATPCYCTKIASRLVRTYTNHHGLKDLC 119

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELLG+ I+KAQQSSDW  + L+ EQL YAA+DV++LH ++ +    L+R  + DLA SC
Sbjct: 120 YELLGVKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLDMMLEREDKQDLAESC 179

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             F+  RAELDLLGW+ VDIFSH
Sbjct: 180 FKFIPARAELDLLGWDGVDIFSH 202


>gi|56417079|ref|YP_154153.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222475445|ref|YP_002563862.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
 gi|254995250|ref|ZP_05277440.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
 gi|255003431|ref|ZP_05278395.1| ribonuclease D (rnd) [Anaplasma marginale str. Puerto Rico]
 gi|255004550|ref|ZP_05279351.1| ribonuclease D (rnd) [Anaplasma marginale str. Virginia]
 gi|56388311|gb|AAV86898.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222419583|gb|ACM49606.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
          Length = 204

 Score =  270 bits (691), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 105/203 (51%), Positives = 142/203 (69%), Gaps = 3/203 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           + VH  D+P        + +AVDTET+GL+ RRDR+C+VQLS GDG   +++ + G  +A
Sbjct: 3   VFVHNNDLPDGLDLG--NVVAVDTETMGLVCRRDRVCLVQLSSGDGDAHLVKFS-GDYSA 59

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  ++ + +  KIFH+ RFD+A + + FG+   P +CTKIASRL RTYTN HGLKD  
Sbjct: 60  PNLRRIVSNPEIMKIFHFARFDVAAIRHCFGMWAVPCYCTKIASRLVRTYTNHHGLKDLC 119

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELLG+ I+KAQQSSDW  + L+ EQL YAA+DV++LH ++ +    L+R  + DLA SC
Sbjct: 120 YELLGVKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLDMMLEREDKQDLAESC 179

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             F+  RAELDLLGW+ VDIFSH
Sbjct: 180 FKFIPARAELDLLGWDGVDIFSH 202


>gi|209966458|ref|YP_002299373.1| ribonuclease D, putative [Rhodospirillum centenum SW]
 gi|209959924|gb|ACJ00561.1| ribonuclease D, putative [Rhodospirillum centenum SW]
          Length = 204

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/205 (51%), Positives = 141/205 (68%), Gaps = 3/205 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-K 61
            I +H+GD+P          +A+DTET+GL P RDRLC+VQLS GDG   +++   G   
Sbjct: 2   PIDLHDGDLPDGLDLG--PVVAIDTETMGLNPARDRLCLVQLSAGDGRCHLVQFRQGAGY 59

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +APNL  ML D    K+FH+ RFDIAV+    GV   PV+CTK+AS+LTRT+T++HGLKD
Sbjct: 60  DAPNLKRMLTDPGTLKLFHFARFDIAVMQAYLGVLTGPVYCTKVASKLTRTFTDRHGLKD 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             ++LLG+ +SK QQSSDW AD+L+ EQL+YAASDV+HLH ++ +    L R GR+ LA 
Sbjct: 120 LCRDLLGVELSKQQQSSDWGADELTAEQLKYAASDVLHLHEIKARLDGMLAREGRTALAE 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
            C  FL  RA LDL GW + D+F+H
Sbjct: 180 DCFRFLPTRALLDLGGWADPDLFAH 204


>gi|163794941|ref|ZP_02188910.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
 gi|159179760|gb|EDP64287.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
          Length = 203

 Score =  269 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/204 (51%), Positives = 143/204 (70%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+ +H GD+P          +A+D+ET+GL P RDRLC+VQ S GDGT  +++ A G+ +
Sbjct: 2   TVTLHHGDLPDGLDLG--SVVAIDSETMGLRPIRDRLCVVQFSSGDGTAHLVQFAPGEYD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  ML D    K+FH+ RFD+AVL    GV   P++CTKIAS+L RTYT++HGLKD 
Sbjct: 60  APNLTRMLTDPDVLKLFHFARFDVAVLQAFLGVATAPIYCTKIASKLVRTYTDRHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +EL+G+++SK QQSSDW A +L+ EQL YAASDV+HLHAL+ +    L R GR+ +A  
Sbjct: 120 CRELIGVDLSKQQQSSDWGAAELTAEQLAYAASDVLHLHALKDRLDIMLAREGRTGIAAD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL  RA LDL+G+ + DIF+H
Sbjct: 180 CFRFLGTRAALDLIGYADEDIFAH 203


>gi|58040278|ref|YP_192242.1| ribonuclease D [Gluconobacter oxydans 621H]
 gi|58002692|gb|AAW61586.1| Ribonuclease D [Gluconobacter oxydans 621H]
          Length = 214

 Score =  269 bits (688), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/210 (46%), Positives = 136/210 (64%), Gaps = 7/210 (3%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60
             I +++GD+P +     +  +A+DTET+GL P RDRLC+VQLS GDG   +++I     
Sbjct: 5   NAIHLYDGDLPDDFDLGPL--VAIDTETMGLNPHRDRLCLVQLSAGDGEAHLVQIKPVSM 62

Query: 61  ----KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                + PNL  +L D+   K+ H+ RFD+AVL   F + +  V CTKIA+RL  T+T++
Sbjct: 63  GGRGYDCPNLKALLTDDSVTKLMHFARFDVAVLQNAFNITIPSVICTKIAARLVYTFTDR 122

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           HGL    ++LLG+ ISK QQSSDW A  L+ +QL+YAASDV++LHAL  +    L R  R
Sbjct: 123 HGLAYLCRDLLGVEISKHQQSSDWGAQTLTPDQLRYAASDVLYLHALWDKLEAMLIRENR 182

Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206
            DLA +C +FL  R  LDL+G+E  DIFSH
Sbjct: 183 RDLAQACYDFLPARCRLDLMGYEEPDIFSH 212


>gi|319405135|emb|CBI78741.1| Ribonuclease D [Bartonella sp. AR 15-3]
          Length = 206

 Score =  268 bits (687), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 127/206 (61%), Positives = 158/206 (76%), Gaps = 1/206 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  IR+H+GD+P       VD++A+DTETLGL P RDRLC+VQLS GDGT DII+IA GQ
Sbjct: 1   MAEIRIHQGDLP-NLDNYCVDSVAIDTETLGLQPHRDRLCVVQLSSGDGTADIIQIAKGQ 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             APNLV +L D+K  KIFH+GRFD+A+L +TF V    VFCTKIAS+LTRTYT++HGLK
Sbjct: 60  NRAPNLVTLLEDKKITKIFHFGRFDLAILAHTFAVMPDVVFCTKIASKLTRTYTDRHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +   ELL +NISK QQSSDW+AD LS  Q++YAASDV++LH L+  F E+L+R  R D+A
Sbjct: 120 EICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIFEERLKREEREDIA 179

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            +C  FL  RA+LDLLGW  VDIF+H
Sbjct: 180 KACFQFLPVRAKLDLLGWAEVDIFAH 205


>gi|88607131|ref|YP_505646.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
 gi|88598194|gb|ABD43664.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
          Length = 204

 Score =  268 bits (686), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/203 (51%), Positives = 142/203 (69%), Gaps = 3/203 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           + VH  D+P +      D +AVDTET+GL+ RRDR+C+VQLS G+G   +++   G  +A
Sbjct: 3   VFVHRNDLPHDVDLG--DMVAVDTETMGLVCRRDRVCLVQLSAGNGDAHLVKF-DGDYSA 59

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  ++ D    KIFH+ RFD+A + + FG+   P +CTKIASRL RTYTN HGLKD  
Sbjct: 60  PNLRKVISDPGVLKIFHFARFDVAAIRHGFGMWATPCYCTKIASRLVRTYTNHHGLKDLC 119

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELLG+ I+KAQQSSDW  + L+ EQL YAA+DV++LHA++ +    L+R  + +LA +C
Sbjct: 120 YELLGVKINKAQQSSDWGREVLTAEQLSYAAADVIYLHAIKKKLDMMLEREEKQELAEAC 179

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             F+  RAELDLLGW+ VDIFSH
Sbjct: 180 FKFVPVRAELDLLGWDGVDIFSH 202


>gi|304320833|ref|YP_003854476.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
 gi|303299735|gb|ADM09334.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
          Length = 204

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 106/204 (51%), Positives = 141/204 (69%), Gaps = 2/204 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +H  D+PA+   R+  A+AVD+ETLGL P RDRLC+VQLS GDG   ++   AG  +A
Sbjct: 3   IHLHRNDLPADI--RFDGAVAVDSETLGLNPLRDRLCVVQLSAGDGDAHLVTFDAGAYDA 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P+L  +L D +  KIFH+ RFD+AV  +  GV   P++CTKIAS+L RTYT++HGLKD +
Sbjct: 61  PHLKAVLSDPQLLKIFHFARFDVAVFKHWLGVDTTPIYCTKIASKLARTYTDRHGLKDVV 120

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +E+ G+ +SK QQSSDW+A +L++ Q  YAASDV+HLHA+R      + R GR  L T+ 
Sbjct: 121 REMTGVELSKQQQSSDWAAAELTEAQRAYAASDVLHLHAVREGLDRMIDREGRRALLTAA 180

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
             FL  RA LDL GW   DIF+HS
Sbjct: 181 FAFLPTRAALDLAGWSETDIFAHS 204


>gi|149185091|ref|ZP_01863408.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21]
 gi|148831202|gb|EDL49636.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21]
          Length = 207

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/205 (48%), Positives = 143/205 (69%), Gaps = 3/205 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKN 62
           +  HE D+P +  A     +AVDTET+GL+  RDRLC+VQ+S G+G   ++R       +
Sbjct: 3   VHFHEEDLPEDVLAD--GPVAVDTETMGLVTIRDRLCVVQISDGNGDEHLVRFGPDSDYD 60

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D +R K+FH+ RFD+A + Y  GV   P +CTKIAS++ RT+T++HGLK+ 
Sbjct: 61  APNLKAVLGDPERLKLFHFARFDLAAIEYYLGVTAAPCYCTKIASKMVRTFTDRHGLKNL 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ELLG ++SKAQQSSDW    L+D Q  YAASDV  LH ++ +   +L+R GR++LA +
Sbjct: 121 VEELLGESMSKAQQSSDWGGPVLNDAQRDYAASDVRFLHRMKEELDRRLEREGRTELAQA 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
           C +FL  RA LD+LGW++ DIFSH+
Sbjct: 181 CFDFLPARAHLDILGWDDHDIFSHA 205


>gi|114327365|ref|YP_744522.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
 gi|114315539|gb|ABI61599.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
          Length = 259

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/210 (45%), Positives = 132/210 (62%), Gaps = 7/210 (3%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            TI +H  D+P          IA+DTET+GL   RDRLC++Q+S GDG   +++I   + 
Sbjct: 52  KTIHLHRHDLPPSLDIG--PIIAIDTETMGLNHHRDRLCLIQISAGDGHAHLVQIVPERL 109

Query: 62  -----NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                + PNL  +L +    K+ HY RFD+ +L    G+ +  V CTKIA++L RT+T++
Sbjct: 110 GGKGADCPNLKRLLSNPGCVKLMHYARFDVGILQNALGIAMSNVKCTKIAAKLVRTFTDR 169

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           HGLKD  ++LLG+ ISK QQSSDW A +L+ EQ+ YAASDV++LHAL  +    L R  R
Sbjct: 170 HGLKDLCRDLLGVEISKQQQSSDWGAPELTPEQMAYAASDVLYLHALWNRLEGLLIREDR 229

Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206
             LA +C  FL  RA LD LG++  DIFSH
Sbjct: 230 LALAEACFAFLPARARLDYLGYDEPDIFSH 259


>gi|218440719|ref|YP_002379048.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
 gi|218173447|gb|ACK72180.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
          Length = 209

 Score =  265 bits (679), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/209 (46%), Positives = 131/209 (62%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+  E  +RY   DAIAVDTET+GL P RDRLC++QL   +G V  IR+  
Sbjct: 3   LDNFKVLQEDLSDEILSRYLKADAIAVDTETMGLNPHRDRLCLIQLCDPEGYVTAIRVTK 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ+ AP L  ++      K+FH+ RFD+A L + FG+   P+FCTKIAS+L RTYT+ HG
Sbjct: 63  GQQEAPKLKQLMEASNITKVFHFARFDVAQLRHHFGIETTPIFCTKIASKLARTYTSSHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  + EL G+ + K  QSSDW  AD LS+EQL YAA+DV +L  ++ +    L R  R 
Sbjct: 123 LKSLVLELEGVELDKTAQSSDWGNADKLSEEQLSYAANDVRYLLGVKEKLISMLNRENRM 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA +C N L     LDL  ++N  IF H
Sbjct: 183 ELARNCFNCLPVLVSLDLQFYQN--IFEH 209


>gi|91205563|ref|YP_537918.1| ribonuclease D [Rickettsia bellii RML369-C]
 gi|157827279|ref|YP_001496343.1| ribonuclease D [Rickettsia bellii OSU 85-389]
 gi|91069107|gb|ABE04829.1| Ribonuclease D [Rickettsia bellii RML369-C]
 gi|157802583|gb|ABV79306.1| Ribonuclease D [Rickettsia bellii OSU 85-389]
          Length = 203

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 98/204 (48%), Positives = 135/204 (66%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI +++ D+P +        +A+DTET+GL   RD+LC++Q S G+G   ++       N
Sbjct: 2   TITLYQNDLPDDFELE--GDLAIDTETMGLNLYRDKLCLLQFSNGNGDAHLVHFLNQNYN 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D++R KIFH+ RFD+A +    G+ +  +FCTKI+S+L RTYT  HGLKD 
Sbjct: 60  APNLKNLLSDKERCKIFHFARFDLAAIKKYLGIDLENIFCTKISSKLVRTYTESHGLKDI 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELLG+NISK QQSS W AD+LS +Q +YAA DV++LH LR    E L +  R +LA  
Sbjct: 120 CRELLGVNISKQQQSSYWGADNLSSDQQEYAAKDVLYLHKLREHLIEMLVKENRFELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDL+GW+ VDIF+H
Sbjct: 180 IFKFLPTRANLDLVGWDEVDIFTH 203


>gi|294084811|ref|YP_003551571.1| 3'- 5' exonuclease family protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664386|gb|ADE39487.1| 3'- 5' exonuclease family protein, putative [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 203

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 97/203 (47%), Positives = 140/203 (68%), Gaps = 2/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           + +++ D+PA+        +A+DTET+GL  +RDRLC+VQLS GDG   +++IA   K +
Sbjct: 3   VNIYKDDLPADIDLG--SIVAIDTETMGLKTQRDRLCLVQLSSGDGNAHLVQIAQPAKPS 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  +L D    K+FH+ RFD+A L +  G     ++CTKIAS+L RTYT++HGLK+  
Sbjct: 61  PVLAALLADPAVTKLFHFARFDLAALIHYIGAVEGDIYCTKIASKLARTYTDRHGLKELC 120

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +ELL I+ISK QQSSDW A+ L+ +Q  YAA DV++LHA+R + +  L+R  R  LA +C
Sbjct: 121 RELLQIDISKQQQSSDWGAETLTIDQQNYAAGDVLYLHAIREKLSYMLERENRMALANAC 180

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL +RA+LDL+G+ +VDIF H
Sbjct: 181 FGFLPERAQLDLIGFGDVDIFHH 203


>gi|126660170|ref|ZP_01731288.1| 3'-5' exonuclease [Cyanothece sp. CCY0110]
 gi|126618535|gb|EAZ89286.1| 3'-5' exonuclease [Cyanothece sp. CCY0110]
          Length = 214

 Score =  264 bits (675), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 100/208 (48%), Positives = 134/208 (64%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
              +V + D+ +E   RY   DAIA+DTET+GL+P+RDRLC+VQL    G V  IRI   
Sbjct: 9   NNFQVCDRDLTSETLDRYLQTDAIAIDTETMGLIPQRDRLCLVQLCDSSGYVTAIRIEKE 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           QK APNL  +L ++   KIFHY RFD+A   Y FG+   P+FCTK+AS+L RTYT  HGL
Sbjct: 69  QKEAPNLKKLLENQSIVKIFHYARFDVAQFKYNFGIDTAPIFCTKVASKLARTYTGSHGL 128

Query: 120 KDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K  ++E+ G+ + K+ QSSDW  + +LS+ QL YAA+DV +L  LR Q    LQR  R +
Sbjct: 129 KALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLREQLITMLQREERWE 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           +A  C N +    ELDL+ ++  DIF H
Sbjct: 189 IAQKCMNVISVFVELDLMYYK--DIFEH 214


>gi|254422868|ref|ZP_05036586.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
 gi|196190357|gb|EDX85321.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
          Length = 207

 Score =  263 bits (674), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 104/209 (49%), Positives = 134/209 (64%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M    V + D+  +   RY   DAIAVDTET+GL P RDRLC++QL    G V  IR   
Sbjct: 1   MENFEVCDYDLTPQLLERYIQADAIAVDTETMGLNPLRDRLCLIQLCDPGGYVCAIRTER 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ +APNL  +L ++   KIFH+ RFD+A L +  G+   PVFCTKIAS++ RTY+  HG
Sbjct: 61  GQSSAPNLKQLLEEKNITKIFHFARFDLATLQHHLGIVTAPVFCTKIASKIARTYSPSHG 120

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  +KEL+GI + K+QQSSDW  A  LSDEQL YAA+DV +L+ L+ + TE L+R GR 
Sbjct: 121 LKSLVKELIGIELDKSQQSSDWGNAAALSDEQLSYAANDVRYLYVLQNKLTEMLKREGRW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C + L    ELDL  + +V  F H
Sbjct: 181 TLAKQCLDCLPVFVELDLRQFGSV--FEH 207


>gi|83313031|ref|YP_423295.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
 gi|82947872|dbj|BAE52736.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
          Length = 203

 Score =  263 bits (674), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 106/204 (51%), Positives = 137/204 (67%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+  H+ D+P       +  +A+D+ET+GL  +RDRLC+VQLS GDG   ++     + N
Sbjct: 2   TVFYHKNDLPDGLDLGNL--VAIDSETMGLNLQRDRLCVVQLSAGDGHAHVVHYPKPEWN 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           +PNLV ML D K  K+FH+ RFD+A++    GVR  PVFCTKIAS+LTRT T  H LK  
Sbjct: 60  SPNLVRMLADSKVTKLFHFARFDVAMIRRYLGVRCTPVFCTKIASKLTRTNTEGHSLKVL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            KE L I++SK QQSSDW A +L+ +QL YAASDV++LH L+ +    L R GR  LA +
Sbjct: 120 CKEFLNIDLSKLQQSSDWGAPELTADQLAYAASDVLYLHQLKDRLDALLDREGRRALAEA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL DRAELDL GW+  DIFSH
Sbjct: 180 CFAFLPDRAELDLAGWDAEDIFSH 203


>gi|225630598|ref|YP_002727389.1| 3'-5' exonuclease [Wolbachia sp. wRi]
 gi|225592579|gb|ACN95598.1| 3'-5' exonuclease [Wolbachia sp. wRi]
          Length = 206

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +++ D+PA      V +IAVDTE +GL+  RDRLC+VQLS  DG   ++++      A
Sbjct: 3   IFLYKDDLPASSIPDDVRSIAVDTEAMGLLHGRDRLCLVQLSFNDGNAHLVQL-KNDYTA 61

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D+   KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+  
Sbjct: 62  PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELL   ++K QQSSDW  ++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C
Sbjct: 122 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 181

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R ELDL+GWENVDIF+H
Sbjct: 182 FEFLPTRIELDLMGWENVDIFNH 204


>gi|58698542|ref|ZP_00373443.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534924|gb|EAL59022.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 234

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +++ D+PA      V +IAVDTE +GL+  RDRLC+VQLS  DG   ++++      A
Sbjct: 31  IFLYKDDLPASSIPDDVRSIAVDTEAMGLLHGRDRLCLVQLSFNDGNAHLVQL-KNDYTA 89

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D+   KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+  
Sbjct: 90  PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 149

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELL   ++K QQSSDW  ++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C
Sbjct: 150 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 209

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R ELDL+GWENVDIF+H
Sbjct: 210 FEFLPTRIELDLMGWENVDIFNH 232


>gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803]
 gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803]
          Length = 217

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/209 (44%), Positives = 128/209 (61%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           ++   V + D+P +   +      +AVDTET+GL P RDRLC+VQ+   +G V  +RIA 
Sbjct: 7   LSQFEVFDYDLPEDVCQQLLACKEVAVDTETMGLNPHRDRLCLVQICDPEGNVTALRIAK 66

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ+ APNL  ++ D    KIFH+ RFD A L +TF ++  P+FCTKIAS++ RTYT+ HG
Sbjct: 67  GQEEAPNLTRLMEDPGITKIFHFARFDTAQLKHTFDIKTYPIFCTKIASKIARTYTSHHG 126

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  ++EL+G+ + K+ Q SDW  A +LS  QL YAA+DV +L  LR +  + L R  R 
Sbjct: 127 LKTLVQELVGVELDKSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKLEKMLAREDRL 186

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C   L     LDL  + NV  F H
Sbjct: 187 RLAQRCFECLPVMVTLDLGMYGNV--FEH 213


>gi|166365344|ref|YP_001657617.1| ribonuclease D [Microcystis aeruginosa NIES-843]
 gi|166087717|dbj|BAG02425.1| probable ribonuclease D [Microcystis aeruginosa NIES-843]
          Length = 209

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/209 (46%), Positives = 138/209 (66%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+  +  +RY  V++IAVDTET+GL+P RDRLC++QL    G V  IR+  
Sbjct: 3   LDNFQVCDRDLSDDLLSRYLGVNSIAVDTETMGLIPGRDRLCLIQLCDPSGFVTAIRVFR 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  APNL  ++ DE+ EK+FH+ RFD+A L  TFG+  +P+FCTKIAS+L RTYT+ HG
Sbjct: 63  GQTEAPNLKKVMEDERIEKVFHFARFDVAQLSQTFGIATKPIFCTKIASKLARTYTSSHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  ++EL GI + K  QSSDW  A +L+ +QL YAA+DV +L ++R +    LQR  R 
Sbjct: 123 LKSLVQELEGIELDKTAQSSDWGNAANLTPQQLSYAANDVRYLLSVRDKLIVMLQREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C + +     LDL  ++  DIF H
Sbjct: 183 ELAQKCFSCIPIFTALDLQQYK--DIFEH 209


>gi|42520711|ref|NP_966626.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410451|gb|AAS14560.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 206

 Score =  262 bits (670), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +++ D+PA      + +IAVDTE +GL+  RDRLC+VQLS  DG   ++++      A
Sbjct: 3   IFLYKDDLPASSIPDDIRSIAVDTEAMGLLHSRDRLCLVQLSFNDGNAHLVQL-KNDYTA 61

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D+   KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+  
Sbjct: 62  PNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELL   ++K QQSSDW  ++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C
Sbjct: 122 LELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKC 181

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R ELDL+GWENVDIF+H
Sbjct: 182 FEFLPTRIELDLMGWENVDIFNH 204


>gi|46201483|ref|ZP_00054962.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 203

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/204 (51%), Positives = 137/204 (67%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+  H+ D+P       +  +A+D+ET+GL  +RDRLC+VQLS GDG   ++     + N
Sbjct: 2   TVFYHKNDLPDGLDLGNL--VAIDSETMGLNLQRDRLCVVQLSAGDGHAHVVHYPKPEWN 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           +PNLV ML D K  K+FH+ RFD+A++    GVR  P+FCTKIAS+LTRT T  H LK  
Sbjct: 60  SPNLVRMLADPKVTKLFHFARFDVAMIRKYLGVRCNPLFCTKIASKLTRTNTEGHSLKVL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            KE L I++SK QQSSDW A +L+ +QL YAASDV++LH L+ +    L R GR  LA +
Sbjct: 120 CKEFLNIDLSKLQQSSDWGAPELNADQLAYAASDVLYLHQLKDRLDMLLDREGRRALAEA 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL DRAELDL GW+  DIFSH
Sbjct: 180 CFAFLPDRAELDLAGWDAEDIFSH 203


>gi|190571105|ref|YP_001975463.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213019628|ref|ZP_03335434.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357377|emb|CAQ54811.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995050|gb|EEB55692.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 206

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 94/203 (46%), Positives = 132/203 (65%), Gaps = 1/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I +++ D+PA      + +IAVDTE +GL+  RDRLC+VQLS  DG   +++       A
Sbjct: 3   IFIYKDDLPASAIPNDIKSIAVDTEAMGLLHSRDRLCLVQLSFNDGNAHLVQF-KNDYTA 61

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D+   KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+  
Sbjct: 62  PNLRKILEDKNITKIFHFARFDVSIIHYYLQTWALPCYCTKIASRLVRTYTDNHSLKELC 121

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELL I ++K QQSSDW  ++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C
Sbjct: 122 LELLDIKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHKIKEKLDLMLERENRKELAEKC 181

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R ELD +GW +VDIF+H
Sbjct: 182 FEFLPTRIELDSMGWGSVDIFNH 204


>gi|67921652|ref|ZP_00515170.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
 gi|67856764|gb|EAM52005.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
          Length = 214

 Score =  261 bits (669), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 97/208 (46%), Positives = 131/208 (62%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
              +V + D+ +E   RY   DA+A+DTET+GL+P+RDRLC+VQL    G V  IRI  G
Sbjct: 9   NNFQVCDRDLSSETLERYLKADALAIDTETMGLVPQRDRLCLVQLCDPSGYVTAIRIERG 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q  APNL  +L ++   KIFHY RFD+    Y F V   P+FCTK+AS+L RTYT  HGL
Sbjct: 69  QTEAPNLKQLLENKNIVKIFHYARFDVGQFKYNFSVETDPIFCTKVASKLARTYTGSHGL 128

Query: 120 KDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K  ++EL G+ + K+ QSSDW  + +LS+ QL YAA+DV +L  LR Q    L+R  R +
Sbjct: 129 KSLVQELEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIQLREQLITMLKREERWE 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           +A  C   +    ELDL+ ++  DIF H
Sbjct: 189 IAQKCMKVIPLFVELDLMYYK--DIFDH 214


>gi|159030499|emb|CAO91403.1| rnd [Microcystis aeruginosa PCC 7806]
          Length = 209

 Score =  261 bits (667), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 97/209 (46%), Positives = 137/209 (65%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+  +  +RY  V++IAVDTET+GL+P RDRLC++QL    G V  IRI  
Sbjct: 3   LDNFQVCDRDLSDDLLSRYLGVNSIAVDTETMGLIPGRDRLCLIQLCDPSGFVTAIRIFR 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  APNL  ++ DE+ EK+FH+ RFD+A L  TFG+  +P+FCTKIAS+L RTYT+ HG
Sbjct: 63  GQTEAPNLKKVMEDERIEKVFHFARFDVAQLSQTFGIATQPIFCTKIASKLARTYTSSHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  ++EL GI + K  QSSDW    +L+ +QL YAA+DV +L ++R +    +QR  R 
Sbjct: 123 LKSLVQELEGIELDKTAQSSDWGNAVNLTPKQLSYAANDVRYLLSVRDKLIVMMQREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C + +     LDL  ++  DIF H
Sbjct: 183 ELAQKCFSCIPIFTALDLQQYK--DIFEH 209


>gi|58584866|ref|YP_198439.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419182|gb|AAW71197.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 206

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/203 (47%), Positives = 134/203 (66%), Gaps = 1/203 (0%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I V++ D+PA      V +IAVDTE +GL+  RDRLC++QLS  DG   +I+       A
Sbjct: 3   IFVYKDDLPASSIPDNVRSIAVDTEAMGLLHVRDRLCLIQLSFNDGNAHLIQF-KNDYAA 61

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           PNL  +L D+   KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+  
Sbjct: 62  PNLRKILGDKNITKIFHFARFDVSIICYYLETWALPCYCTKIASRLVRTYTDNHSLKELC 121

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            ELL   ++K QQSSDW +++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C
Sbjct: 122 LELLDTKLNKQQQSSDWGSENLTDKQKSYAASDVLYLHKIKEKLDLMLERENRKELAQKC 181

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
             FL  R ELDL+GWE++DIF+H
Sbjct: 182 FEFLPIRVELDLMGWEDMDIFNH 204


>gi|319898371|ref|YP_004158464.1| Ribonuclease D [Bartonella clarridgeiae 73]
 gi|319402335|emb|CBI75874.1| Ribonuclease D [Bartonella clarridgeiae 73]
          Length = 193

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 120/187 (64%), Positives = 148/187 (79%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           V++IA+DTETLGL P RDRLC+VQLS GDGT DII++A GQ  APNLV +L D+   KIF
Sbjct: 6   VNSIAIDTETLGLKPHRDRLCVVQLSSGDGTADIIQVAKGQNRAPNLVALLEDKAITKIF 65

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H+GRFD+A+L +TFGV    VFCTKIAS+LTRTYT++HGLK+   ELL INISK QQSSD
Sbjct: 66  HFGRFDLAILAHTFGVIPDVVFCTKIASKLTRTYTDRHGLKEICSELLNINISKQQQSSD 125

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199
           W+AD LS  Q++YAASDV++LH L+  F E+L+R  R D+A +C  FL  RA+LDLLGW 
Sbjct: 126 WAADALSRAQIEYAASDVLYLHRLKNIFEERLKREEREDIAKACFQFLPVRAKLDLLGWS 185

Query: 200 NVDIFSH 206
            VDIF+H
Sbjct: 186 EVDIFAH 192


>gi|170078658|ref|YP_001735296.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
 gi|157811866|gb|ABV80286.1| ribonuclease D [Synechococcus sp. PCC 7002]
 gi|169886327|gb|ACB00041.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
          Length = 207

 Score =  259 bits (664), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/209 (46%), Positives = 127/209 (60%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M    + + D+  E   RY    AIA+DTET+GL P RDRLC+VQL    G V  IRIA 
Sbjct: 1   MDQFALFDQDLSLEILERYLKSGAIAIDTETMGLNPYRDRLCLVQLCDDAGYVSAIRIAQ 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  APNL  ++   +  K+FH+ RFD+A L + FG+  RP FCTKIAS+L RTYT+ HG
Sbjct: 61  GQTAAPNLKALMEAPEITKVFHFARFDLAQLRHVFGIETRPFFCTKIASKLGRTYTSSHG 120

Query: 119 LKDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  +KEL+G+ + K+ QSSDW     LS EQL+YA++DV +L  +  + T  LQR  R 
Sbjct: 121 LKALVKELMGVELDKSAQSSDWGNVAVLSAEQLKYASNDVRYLIPMMRKLTAMLQRENRW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            L   C   L     LDL  ++NV  F H
Sbjct: 181 PLMEECLRCLPTFISLDLAFYDNV--FEH 207


>gi|113475312|ref|YP_721373.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
 gi|110166360|gb|ABG50900.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
          Length = 207

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 140/209 (66%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M+  +V + D+  +  + Y   D++AVDTET+GL+PRRDRLC+VQL    G V  IRI  
Sbjct: 1   MSDFQVCDRDLTKDILSNYLQADSMAVDTETMGLLPRRDRLCLVQLCDPLGQVTAIRIHK 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ+ APNL  ++      K+FH+ RFD+A+L +  G++V P+FCTKI+S+L RTYT +HG
Sbjct: 61  GQQEAPNLKQLMEANSIVKVFHFARFDVAMLQHYLGIKVSPIFCTKISSKLARTYTGKHG 120

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + EL  + + K+ QSSDW  A++L+++QL YAA+DV +L ++R + ++ L+R  R 
Sbjct: 121 LKDLVMELEKVELDKSSQSSDWGNAENLTEKQLNYAANDVRYLLSVREKLSKILKREERW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C   L     LDLL ++  DIF H
Sbjct: 181 ELAQQCFECLPVFVGLDLLQYK--DIFEH 207


>gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
 gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
          Length = 209

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/209 (47%), Positives = 136/209 (65%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+      +Y++  AIAVDTET+GL+P+RDRLC+VQL   +G V +IRIA 
Sbjct: 3   LQDFQVSDRDLSDAALGQYLESTAIAVDTETMGLLPQRDRLCLVQLCNLEGKVTVIRIAK 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  APNL  +       K+FH+ RFDIA L    G++V PVFCTKIAS+L RTYTN+HG
Sbjct: 63  GQTEAPNLKKLFEAANVVKVFHFARFDIATLRANLGIQVSPVFCTKIASKLARTYTNRHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD ++EL  + + K+ QSSDW     LS+ QL YAA+DV +L +++ + TE L+R  R 
Sbjct: 123 LKDVVQELEKVELDKSSQSSDWGNAVSLSEAQLSYAANDVRYLLSVQQKLTEMLKREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            +A  C  FL     LDLL ++  D+F H
Sbjct: 183 KIAQECFEFLPTIVSLDLLQFK--DLFEH 209


>gi|157803820|ref|YP_001492369.1| ribonuclease D [Rickettsia canadensis str. McKiel]
 gi|157785083|gb|ABV73584.1| ribonuclease D [Rickettsia canadensis str. McKiel]
          Length = 203

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/204 (46%), Positives = 131/204 (64%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P     R    +A+DTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   TIKIYQNDLPNNF--RLGGDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFENQNYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKALLSDKSRCKIFHFARFDLAAIKKYLEIELENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+    + L +  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWRADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRFELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              F+  RA LDLLGW  +DIF H
Sbjct: 180 IFRFVPTRANLDLLGWNEIDIFMH 203


>gi|117923642|ref|YP_864259.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
 gi|117607398|gb|ABK42853.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
          Length = 213

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 102/207 (49%), Positives = 129/207 (62%), Gaps = 4/207 (1%)

Query: 3   TIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           TI     D+      RY     +AVDTET+GL   RDRLC+VQ+    G V +++I    
Sbjct: 7   TIHTFIDDLDEAQFQRYMKSPFLAVDTETMGLDINRDRLCVVQMCDVTGEVSVVQIR--N 64

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP L  ++   + EKIFH+ RFD+A +     + ++PVFCTKIAS+L RTYT  HGLK
Sbjct: 65  YQAPRLKALMEAPEVEKIFHFARFDLATMKRWLDIEIKPVFCTKIASKLVRTYTGSHGLK 124

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           D  +ELLG+ + K QQSSDW A+ L+ EQLQYAASDV+HL  +R +  E L R GR  LA
Sbjct: 125 DVSQELLGVVMDKQQQSSDWGAEQLTPEQLQYAASDVIHLVEIRARLVEMLAREGRLQLA 184

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
                FL  R  LDLLGW N DIFSH+
Sbjct: 185 DEIMRFLPTRVALDLLGWNNHDIFSHA 211


>gi|172035932|ref|YP_001802433.1| ribonuclease D [Cyanothece sp. ATCC 51142]
 gi|171697386|gb|ACB50367.1| ribonuclease D [Cyanothece sp. ATCC 51142]
          Length = 214

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/208 (46%), Positives = 130/208 (62%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
              +V + D+  E   RY    AIA+DTET+GL+P+RDRLC+VQL    G V  IRI  G
Sbjct: 9   NKFQVCDRDLSPETLDRYLQAKAIAIDTETMGLIPQRDRLCLVQLCDPSGYVTAIRIEKG 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q+ A NL  +L ++   KIFHY RFD+A   Y F +   P+FCTK+AS+L RTYT  HGL
Sbjct: 69  QQTAENLKQLLENQNIIKIFHYARFDVAQFKYNFAIETEPIFCTKVASKLARTYTGSHGL 128

Query: 120 KDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K  ++E+ G+ + K+ QSSDW  + +LS+ QL YAA+DV +L  L+ Q    LQR  R +
Sbjct: 129 KALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLKEQLITMLQREERWE 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +    ELDL+ ++  DIF H
Sbjct: 189 LAQKCMKVIPLFVELDLMYYK--DIFEH 214


>gi|284053636|ref|ZP_06383846.1| 3'-5' exonuclease [Arthrospira platensis str. Paraca]
          Length = 209

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 132/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M   +V + D+     + +   +A+A+DTET+GL+P RDRLC+VQ+    G V  IRI  
Sbjct: 3   MNDFQVCDRDLSDSRVSEFMEAEALAIDTETMGLLPWRDRLCLVQICDPKGQVVAIRIER 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ+ APNL  +L      K+FH+ RFD+A L +  G+ V PVFCTKIAS+L RTYT +HG
Sbjct: 63  GQREAPNLKTLLETTNILKVFHFARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + EL G+ + K+ QSSDW  A +LS+ QL YAA+DV +L + + +  + L+R  R 
Sbjct: 123 LKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           DLA  C   L     LDL+ ++  DIF H
Sbjct: 183 DLALDCFQCLPTIVTLDLMQFD--DIFKH 209


>gi|291571594|dbj|BAI93866.1| ribonuclease D [Arthrospira platensis NIES-39]
          Length = 207

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 132/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M   +V + D+     + +   +A+A+DTET+GL+P RDRLC+VQ+    G V  IRI  
Sbjct: 1   MNDFQVCDRDLSDSRVSEFMEAEALAIDTETMGLLPWRDRLCLVQICDPKGQVVAIRIER 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ+ APNL  +L      K+FH+ RFD+A L +  G+ V PVFCTKIAS+L RTYT +HG
Sbjct: 61  GQREAPNLKTLLETTNILKVFHFARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHG 120

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + EL G+ + K+ QSSDW  A +LS+ QL YAA+DV +L + + +  + L+R  R 
Sbjct: 121 LKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREERW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           DLA  C   L     LDL+ ++  DIF H
Sbjct: 181 DLALDCFQCLPTIVTLDLMQFD--DIFKH 207


>gi|218245974|ref|YP_002371345.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
 gi|218166452|gb|ACK65189.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
          Length = 210

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/209 (47%), Positives = 130/209 (62%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+  E  +RY    AIAVDTET+GL+P+RDRLC+VQL    G V  IRI  
Sbjct: 4   LENFQVCDRDLSDETLSRYLAATAIAVDTETMGLIPQRDRLCLVQLCDPSGFVTAIRIER 63

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQK AP L  ++  +   K+FHY RFD+A L Y FG+  +P+FCTKIAS+L RTYT+ HG
Sbjct: 64  GQKEAPKLKQLMEAKTILKVFHYARFDVAQLRYHFGIETQPIFCTKIASKLARTYTSSHG 123

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  ++EL GI + K  QSSDW  + +LS  QL YAA+DV +L   + +    LQR  R 
Sbjct: 124 LKSLVQELEGIELDKTSQSSDWGNSANLSVAQLSYAANDVRYLIPAKEKLITMLQREERW 183

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C N +     LDL  ++  DIF H
Sbjct: 184 QLAEQCFNCIPVFVSLDLEQYK--DIFEH 210


>gi|307151178|ref|YP_003886562.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
 gi|306981406|gb|ADN13287.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
          Length = 209

 Score =  257 bits (658), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 102/209 (48%), Positives = 131/209 (62%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V EGD+  +  A+Y   +AIAVDTET+GL+P RDRLC+VQL    G V  IRIA 
Sbjct: 3   LDNFQVLEGDLSDDILAQYLQAEAIAVDTETMGLIPHRDRLCLVQLCDPTGYVTAIRIAK 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQK AP L  ++ +    K+FH+ RFD+A L +  G+   P+FCTKIAS+L RTYT+ HG
Sbjct: 63  GQKEAPKLKQLMENNHSIKVFHFARFDVAQLRHHLGIETTPIFCTKIASKLARTYTSSHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  + EL GI + K  QSSDW  A +LS+EQL YAA+DV +L  L+ +    LQR  R 
Sbjct: 123 LKSLVLELEGIELDKTAQSSDWGNAANLSEEQLSYAANDVRYLLGLKQKLITMLQREDRW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C   L     LDLL + NV  F H
Sbjct: 183 QLAQDCFQCLPVIVSLDLLLYPNV--FEH 209


>gi|119513593|ref|ZP_01632605.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
 gi|119461746|gb|EAW42771.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
          Length = 189

 Score =  257 bits (657), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 3/189 (1%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
             DAIAVDTET+GL+P+RDRLC+VQL   +G V  IRIA GQ  APNL  ++      KI
Sbjct: 3   ASDAIAVDTETMGLLPQRDRLCLVQLCNPEGKVTAIRIAKGQTEAPNLKILMEAVNVVKI 62

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH+ RFDIA L +  G++V+PVFCTKIAS+L RTYTN+HGLK+ ++EL  I + K+ QSS
Sbjct: 63  FHFARFDIATLRHNLGIQVQPVFCTKIASKLARTYTNRHGLKEVVQELEHIELDKSSQSS 122

Query: 139 DWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           DW  A +LS+ QL YAA+DV +L ++R +  E LQR  R ++A  C   L     LDLL 
Sbjct: 123 DWGNAANLSEAQLNYAANDVRYLISVRQKLMEMLQREERWEIAQECFQVLPTLVTLDLLQ 182

Query: 198 WENVDIFSH 206
           ++  D+F H
Sbjct: 183 FK--DLFEH 189


>gi|257059023|ref|YP_003136911.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
 gi|256589189|gb|ACV00076.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
          Length = 210

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/209 (46%), Positives = 130/209 (62%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+  +  +RY    AIAVDTET+GL+P+RDRLC+VQL    G V  IRI  
Sbjct: 4   LENFQVCDRDLSDQTLSRYLAATAIAVDTETMGLIPQRDRLCLVQLCDPSGFVTAIRIER 63

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQK AP L  ++  +   K+FHY RFD+A L Y FG+  +P+FCTKIAS+L RTYT+ HG
Sbjct: 64  GQKEAPKLKQLMEAKTILKVFHYARFDVAQLRYHFGIETQPIFCTKIASKLARTYTSSHG 123

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK  ++EL GI + K  QSSDW  + +LS  QL YAA+DV +L   + +    LQR  R 
Sbjct: 124 LKSLVQELEGIELDKTSQSSDWGNSANLSVAQLSYAANDVRYLIPAKEKLITMLQREERW 183

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C N +     LDL  ++  DIF H
Sbjct: 184 QLAEQCFNCIPVFVSLDLEQYK--DIFEH 210


>gi|209524209|ref|ZP_03272759.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
 gi|209495300|gb|EDZ95605.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
          Length = 207

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 132/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M   +V + D+     + +   +A+A+DTET+GL+P RDRLC+VQ+    G V  IRI  
Sbjct: 1   MNDFQVCDRDLSDSRLSEFMAAEALAIDTETMGLLPGRDRLCLVQICDPKGQVVAIRIER 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ+ APNL  +L      K+FH+ RFD+A L +  G+ V PVFCTKIAS+L RTYT +HG
Sbjct: 61  GQREAPNLKTLLETANILKVFHFARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHG 120

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + EL G+ + K+ QSSDW  A +LS+ QL YAA+DV +L + + +  + L+R  R 
Sbjct: 121 LKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLIQMLKREERW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           DLA  C   L     LDL+ ++  DIF H
Sbjct: 181 DLALDCFQCLPTIVTLDLMQFD--DIFKH 207


>gi|300867874|ref|ZP_07112515.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
 gi|300334110|emb|CBN57691.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
          Length = 210

 Score =  255 bits (653), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 100/209 (47%), Positives = 133/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           MT   V + D+P    + Y   +AIA DTET+GL+P RDRLC+VQL   +G V ++RIA 
Sbjct: 1   MTDFNVCDRDLPDTLLSHYLTAEAIAADTETMGLLPWRDRLCLVQLCDAEGIVTVVRIAK 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ+ APNL  ++      KIFH+ RFD+A L Y   + V PVFC+KIAS+L RTYT +HG
Sbjct: 61  GQREAPNLKKLMEASNIVKIFHFARFDMATLKYHLDIHVAPVFCSKIASKLARTYTGKHG 120

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD ++EL  + + K  QSSDW  A +LS++QL+YAA+DV +L + R +    LQR  R 
Sbjct: 121 LKDLVQELEQVELDKTAQSSDWGNAANLSEKQLRYAANDVRYLISAREKLITMLQREDRW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C   L     LDLL ++  DIF H
Sbjct: 181 QLAQECFQCLPVIVSLDLLQFK--DIFDH 207


>gi|158334839|ref|YP_001516011.1| ribonuclease D [Acaryochloris marina MBIC11017]
 gi|158305080|gb|ABW26697.1| ribonuclease D [Acaryochloris marina MBIC11017]
          Length = 209

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 91/209 (43%), Positives = 135/209 (64%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           ++  +V + D+       Y   D IAVDTET+GL P RDRLC+VQ+   +G V ++RIA 
Sbjct: 3   LSEFQVCDRDLSDAFLQDYLQADRIAVDTETMGLKPHRDRLCLVQICNPEGQVTVVRIAQ 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ +APNL  ++  +   K+FH+ RFDIA L +   +   P+FCTKIAS+L RTY+ +HG
Sbjct: 63  GQMDAPNLKQLMESDTVLKVFHFARFDIATLLHHLDIETMPIFCTKIASKLVRTYSPRHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK+ ++EL+G  + K+ QSSDW  A++LS+EQL YA++DV +L + +    + L+R  R 
Sbjct: 123 LKELVRELVGEELDKSAQSSDWGNAENLSEEQLNYASNDVRYLLSAQATLVKMLEREERL 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA +C   L     LDL+ ++N  IF H
Sbjct: 183 ELAMACFQCLPTIVTLDLMHFDN--IFEH 209


>gi|239787681|emb|CAX84189.1| 3\'-5\' exonuclease family protein [uncultured bacterium]
          Length = 202

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 111/202 (54%), Positives = 138/202 (68%), Gaps = 3/202 (1%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            +H GD+P          IA+DTET+GL P RDRLC+VQLS GDG   ++    G+  AP
Sbjct: 4   YLHHGDLPEGLDLG--PVIAIDTETMGLNPMRDRLCLVQLSSGDGDAHLVHF-QGRYEAP 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D  R K+FHY RFDIA+L    GV   PV+CTKIASRLTRT T++HGLKD  +
Sbjct: 61  RLKALLADHNRLKLFHYARFDIAMLARWLGVTCTPVYCTKIASRLTRTNTDKHGLKDLCR 120

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           +LLGI++SK QQ+SDW + DL+ EQ  YAASDV+HLHAL+ +    L+R GR  LA SC 
Sbjct: 121 DLLGIDLSKQQQTSDWGSGDLTAEQQAYAASDVLHLHALKAKLDALLKREGRGALADSCY 180

Query: 185 NFLMDRAELDLLGWENVDIFSH 206
           +FL  RA LDLLGW   DIF+H
Sbjct: 181 SFLPTRAALDLLGWGEEDIFAH 202


>gi|239947292|ref|ZP_04699045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921568|gb|EER21592.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 203

 Score =  254 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 94/204 (46%), Positives = 129/204 (63%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P          +A+DTET+GL   RD+LC++Q S G+G    +        
Sbjct: 2   TIKIYQNDLPNNFELE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHFVHFTNQDYI 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGL D 
Sbjct: 60  APNLKALLLDKTRCKIFHFARFDLAFIKKYLSIDLENIFCTKISSKLVRTYTDSHGLNDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+    + L +  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDLLGW  +DIF H
Sbjct: 180 IFRFLPTRANLDLLGWNEIDIFMH 203


>gi|157825707|ref|YP_001493427.1| ribonuclease D [Rickettsia akari str. Hartford]
 gi|157799665|gb|ABV74919.1| Ribonuclease D [Rickettsia akari str. Hartford]
          Length = 203

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 95/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P          IA+DTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   TIKIYQNDLPDNFELE--GDIAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFVNQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKALLLDKTRCKIFHFARFDLASIKQYLSIDLENIFCTKISSKLVRTYTDNHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W  D+LS EQ +YAA DV++LH L+    + L R  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGTDNLSSEQKEYAAKDVLYLHQLKDMLQKMLLRENRLELAHD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDL+GW  +DIF H
Sbjct: 180 IFRFLPTRANLDLIGWNEIDIFMH 203


>gi|56750860|ref|YP_171561.1| ribonuclease D [Synechococcus elongatus PCC 6301]
 gi|81299489|ref|YP_399697.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
 gi|56685819|dbj|BAD79041.1| probable ribonuclease D [Synechococcus elongatus PCC 6301]
 gi|81168370|gb|ABB56710.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
          Length = 211

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 97/208 (46%), Positives = 127/208 (61%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           +   + E D+  E  A  R   AIA+DTE +GL   RDRLC+VQL    G    +RIA G
Sbjct: 6   SDFHLCEQDLTDELLAQYRQSPAIAIDTEAMGLNFHRDRLCLVQLCDSAGITTCVRIAQG 65

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q  APNL  +  D +  K+FH+ RFDI  L +  G+ V+P+FCTKIAS+L RTY++QHGL
Sbjct: 66  QTVAPNLQALCEDPQITKVFHFARFDITALKHGLGIAVQPIFCTKIASKLARTYSSQHGL 125

Query: 120 KDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K  L+EL+G+ + K  QSSDW  A  LS EQ++YA +DV +L A + + T  LQR GR  
Sbjct: 126 KSLLQELVGVELDKTAQSSDWGNAAALSHEQMRYACNDVRYLLAAQAKLTTMLQREGRWQ 185

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   L   A LDL  + +V  F H
Sbjct: 186 LAQDCFACLPTFAALDLAQFGSV--FEH 211


>gi|254466167|ref|ZP_05079578.1| ribonuclease D [Rhodobacterales bacterium Y4I]
 gi|206687075|gb|EDZ47557.1| ribonuclease D [Rhodobacterales bacterium Y4I]
          Length = 385

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRI 56
           M T+   E       AA     + VDTE L       +LC++QL+      D  V +  +
Sbjct: 1   MKTLTTTEELQAFCDAAAQHPYVTVDTEFLRERTYYSKLCLIQLAFSGNGEDDAVLVDPL 60

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
           A G    P L  +  DE   K+FH  R D+ + +   GV  +P+F T++A+ +   +  Q
Sbjct: 61  ADGISLEP-LYALFRDENVVKVFHAARQDLEIFWVDAGVFPKPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +++++   + K  + +DWS   LS+ Q  YA +DV HL  +      +L++ GR
Sbjct: 119 AGYETLVRKIVKQGLDKTSRFTDWSRRPLSEAQKTYALADVTHLRKIYEFLAAELEKSGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           S         L D A  D+     W+ V   ++S
Sbjct: 179 SHWVAEELQVLTDPATYDIQPQEAWQRVKTRTNS 212


>gi|67459045|ref|YP_246669.1| ribonuclease D [Rickettsia felis URRWXCal2]
 gi|67004578|gb|AAY61504.1| Ribonuclease D [Rickettsia felis URRWXCal2]
          Length = 203

 Score =  254 bits (649), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 94/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            I++++ D+P          IA+DTET+GL   RD+LC++Q S G+G   ++       +
Sbjct: 2   NIKIYQDDLPNNFELE--GDIAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFVNQDYS 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKALLLDKTRCKIFHFARFDLAAIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W  D+LS EQ +YAA DV++LH L+    + L R  R +LA  
Sbjct: 120 CRELLSINISKQQQSSYWGTDNLSSEQKEYAAKDVLYLHQLKDILQKMLLRENRLELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDL+GW  +DIF H
Sbjct: 180 IFRFLPTRANLDLIGWNEIDIFMH 203


>gi|51473610|ref|YP_067367.1| ribonuclease D [Rickettsia typhi str. Wilmington]
 gi|51459922|gb|AAU03885.1| ribonuclease D [Rickettsia typhi str. Wilmington]
          Length = 203

 Score =  254 bits (649), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 94/204 (46%), Positives = 130/204 (63%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            I++++ D+P          IAVDTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   NIKIYQNDLPNNFKLE--GDIAVDTETMGLNIHRDKLCLLQFSNGNGAAHLVHFINQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W  D+LS EQ +YAA DV++LH L+    + L R  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGTDNLSLEQKEYAAKDVLYLHQLKDILQKMLFRENRLELAHE 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  R  LDL+GW+ +DIF+H
Sbjct: 180 IFRFLPTRVNLDLIGWDQIDIFTH 203


>gi|157828459|ref|YP_001494701.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933177|ref|YP_001649966.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
 gi|157800940|gb|ABV76193.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908264|gb|ABY72560.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
          Length = 203

 Score =  253 bits (648), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 93/204 (45%), Positives = 131/204 (64%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P          +A+DTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   TIKIYQNDLPNNFTLE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APN+  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNVKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+    + L +  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDL+GW  +DIF H
Sbjct: 180 IFRFLPIRANLDLIGWNEIDIFMH 203


>gi|15892510|ref|NP_360224.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|34580497|ref|ZP_00141977.1| ribonuclease D [Rickettsia sibirica 246]
 gi|229586700|ref|YP_002845201.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238650888|ref|YP_002916744.1| ribonuclease D [Rickettsia peacockii str. Rustic]
 gi|15619670|gb|AAL03125.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|28261882|gb|EAA25386.1| ribonuclease D [Rickettsia sibirica 246]
 gi|228021750|gb|ACP53458.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238624986|gb|ACR47692.1| ribonuclease D [Rickettsia peacockii str. Rustic]
          Length = 203

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/204 (45%), Positives = 131/204 (64%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P          +A+DTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   TIKIYQNDLPNNFKLE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APN+  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNVKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+    + L +  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  RA LDL+GW  +DIF H
Sbjct: 180 IFRFLPIRANLDLIGWNEIDIFMH 203


>gi|260433597|ref|ZP_05787568.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417425|gb|EEX10684.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
          Length = 424

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M T++  + ++   C  A     + VDTE L       +LC++Q++      D  V +  
Sbjct: 40  MKTLKTTQ-ELADFCRLAANFPYVTVDTEFLRERTYYSKLCLIQMAVPSEDEDSAVLVDP 98

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           +A G    P L  +  +E   K+FH  R D+ + +   G+  +P+F T++A+ +   +  
Sbjct: 99  LADGLSLDP-LYELFQNEDVVKVFHAARQDLEIFWVEAGIFPKPLFDTQVAAMVC-GFGE 156

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  ++++    + K  + +DWS   LSD Q  YA +DV HL  +      +L++ G
Sbjct: 157 QVGYETLVRKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELEKTG 216

Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           RS         L +    D+     W  V   ++S
Sbjct: 217 RSRWVAEELRVLTNPETYDIRPEEAWRRVKTRTNS 251


>gi|157964505|ref|YP_001499329.1| ribonuclease D [Rickettsia massiliae MTU5]
 gi|157844281|gb|ABV84782.1| Ribonuclease D [Rickettsia massiliae MTU5]
          Length = 203

 Score =  252 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/204 (45%), Positives = 132/204 (64%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI++++ D+P          +A+DTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   TIKIYQNDLPNNFELE--GDLAIDTETMGLNLHRDKLCLLQFSNGNGEAHLVHFTNQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKALLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W AD+LS EQ +YAA DV++LH L+    + L +  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGADNLSSEQKEYAAKDVLYLHQLKDILQKMLLKENRYELAQD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
             +FL  RA LDL+GW  +DIF +
Sbjct: 180 IFHFLPTRANLDLIGWNEIDIFMY 203


>gi|86605802|ref|YP_474565.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554344|gb|ABC99302.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
          Length = 210

 Score =  252 bits (646), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/209 (47%), Positives = 136/209 (65%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   ++ + D+  E A        +AVDTET+GL+P+RDRLC+VQ++   G V ++R++ 
Sbjct: 3   LEPFQICDEDLTPEVAEALAGETLLAVDTETMGLIPQRDRLCVVQIANAAGEVVLLRLSR 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           G K AP+L  +L D   EKIFHY RFD+A+L Y  G++  PVFCTKIAS+L RTYT++H 
Sbjct: 63  GVKQAPHLARLLTDPNIEKIFHYARFDLAMLRYHLGIQAWPVFCTKIASKLARTYTSKHS 122

Query: 119 LKDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + EL G+ ++K  QSSDW     LS EQL+YAA+DV +L  +R +  + LQR  R 
Sbjct: 123 LKDVVGELCGVELNKTAQSSDWGNVQALSPEQLEYAANDVRYLIPVRHKLAQMLQREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C   L    ELDLLG+ NV  F H
Sbjct: 183 ELAQRCFQHLPTLVELDLLGYGNV--FEH 209


>gi|161618719|ref|YP_001592606.1| ribonuclease D [Brucella canis ATCC 23365]
 gi|260566676|ref|ZP_05837146.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161335530|gb|ABX61835.1| ribonuclease D [Brucella canis ATCC 23365]
 gi|260156194|gb|EEW91274.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 382

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A  A    D + VDTE +        LC++Q++  D T  +  +A G 
Sbjct: 1   MQLITTTEALEEAVFALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DE+  K+FH  R DI ++F+   +   PVF T++A+ +   + +     
Sbjct: 61  DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++ G ++ K+ + +DW    LSD+QL YA +DV +L  + L   E+LQ+ GRS+  
Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   DL     W  V 
Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203


>gi|163741269|ref|ZP_02148661.1| ribonuclease D [Phaeobacter gallaeciensis 2.10]
 gi|161385622|gb|EDQ09999.1| ribonuclease D [Phaeobacter gallaeciensis 2.10]
          Length = 385

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M T+   E D+ A C AA   D + VDTE L       +LC+VQL+    GD    ++  
Sbjct: 1   MKTLTSTE-DLQAFCEAAAQHDYVTVDTEFLRERTYYSKLCLVQLAYPGAGDENAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            A   +   L  +  +E   K+FH  R D+ + +    V  +P+F T++A+ +   +  Q
Sbjct: 60  LADGLSLEPLYDLFRNETVVKVFHAARQDLEIFWVDAQVFPKPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +++++   + K  + +DWS   LSD Q  YA +DV HL  +      +L+R GR
Sbjct: 119 VGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKRTGR 178

Query: 177 SDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
           +         L D A  D+     W  V   ++S
Sbjct: 179 ARWVEEELQVLTDPATYDVDPQEAWRRVKTRTNS 212


>gi|254718869|ref|ZP_05180680.1| Rnd, ribonuclease D [Brucella sp. 83/13]
 gi|265983854|ref|ZP_06096589.1| ribonuclease D [Brucella sp. 83/13]
 gi|306837628|ref|ZP_07470498.1| ribonuclease D [Brucella sp. NF 2653]
 gi|264662446|gb|EEZ32707.1| ribonuclease D [Brucella sp. 83/13]
 gi|306407277|gb|EFM63486.1| ribonuclease D [Brucella sp. NF 2653]
          Length = 385

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A  A    D + VDTE +        LC++Q++  D T  +  +A G 
Sbjct: 1   MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DEK  K+FH  R DI ++F+   +   PVF T++A+ +   + +     
Sbjct: 61  DLAP-FFRLMADEKIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++ G ++ K+ + +DW    LSD+QL YA +DV +L  + L   E+LQ+ GRS+  
Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   DL     W  V 
Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203


>gi|86608835|ref|YP_477597.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557377|gb|ABD02334.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 210

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/209 (48%), Positives = 138/209 (66%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDI-PAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   ++ + D+ PA   A      +AVDTET+GL+P+RDRLC+VQ++   G V ++R++ 
Sbjct: 3   LQPFQLCDEDLTPAVAKALAREPYLAVDTETMGLIPQRDRLCVVQIANSAGEVVLLRLSR 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           G K AP L  +L+    EKIFHY RFD+A+L Y  G+R  PVFCTKIAS+L RTYT++HG
Sbjct: 63  GVKQAPFLAQLLMAPSIEKIFHYARFDLAMLRYHLGIRAWPVFCTKIASKLARTYTSKHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + EL G+ ++K  QSSDW A   LS EQL+YAA+DV +L  +R +  E L+R  R 
Sbjct: 123 LKDVVSELCGVELNKTAQSSDWGAVHALSAEQLEYAANDVRYLIPVRHKLAEMLRREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C   L    ELDLLG+ NV  F H
Sbjct: 183 ELAQQCFQHLPTLVELDLLGFSNV--FEH 209


>gi|163736203|ref|ZP_02143622.1| ribonuclease D [Phaeobacter gallaeciensis BS107]
 gi|161390073|gb|EDQ14423.1| ribonuclease D [Phaeobacter gallaeciensis BS107]
          Length = 385

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M T+   E D+ A C AA   D + VDTE L       +LC+VQL+    GD    ++  
Sbjct: 1   MKTLTSTE-DLQAFCEAAAQHDYVTVDTEFLRERTYYSKLCLVQLAYPGAGDENAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            A   +   L  +  +E   K+FH  R D+ + +    V  +P+F T++A+ +   +  Q
Sbjct: 60  LADGLSLEPLYDLFRNETVVKVFHAARQDLEIFWVDAQVFPKPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +++++   + K  + +DWS   LSD Q  YA +DV HL  +      +L+R GR
Sbjct: 119 VGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKRTGR 178

Query: 177 SDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
           +         L D A  D+     W  V   ++S
Sbjct: 179 ARWVEEELQVLTDPATYDVDPQEAWRRVKTRTNS 212


>gi|23501637|ref|NP_697764.1| ribonuclease D [Brucella suis 1330]
 gi|254704076|ref|ZP_05165904.1| ribonuclease D [Brucella suis bv. 3 str. 686]
 gi|261754734|ref|ZP_05998443.1| ribonuclease D [Brucella suis bv. 3 str. 686]
 gi|23347555|gb|AAN29679.1| ribonuclease D [Brucella suis 1330]
 gi|261744487|gb|EEY32413.1| ribonuclease D [Brucella suis bv. 3 str. 686]
          Length = 385

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A  A    D + VDTE +        LC++Q++  D T  +  +A G 
Sbjct: 1   MQLITTTEALEEAVFALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DE+  K+FH  R DI ++F+   +   PVF T++A+ +   + +     
Sbjct: 61  DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++ G ++ K+ + +DW    LSD+QL YA +DV +L  + L   E+LQ+ GRS+  
Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   DL     W  V 
Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203


>gi|306842001|ref|ZP_07474675.1| ribonuclease D [Brucella sp. BO2]
 gi|306843696|ref|ZP_07476296.1| ribonuclease D [Brucella sp. BO1]
 gi|306276006|gb|EFM57715.1| ribonuclease D [Brucella sp. BO1]
 gi|306287929|gb|EFM59346.1| ribonuclease D [Brucella sp. BO2]
          Length = 385

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A  A    D + VDTE +        LC++Q++  D T  +  +A G 
Sbjct: 1   MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DEK  K+FH  R DI ++F+   +   PVF T++A+ +   + +     
Sbjct: 61  DLAP-FFRLMADEKIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++ G ++ K+ + +DW    LSD+QL YA +DV +L  + L   E+LQ+ GRS+  
Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   DL     W  V 
Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203


>gi|254689015|ref|ZP_05152269.1| Rnd, ribonuclease D [Brucella abortus bv. 6 str. 870]
 gi|260754508|ref|ZP_05866856.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
 gi|260674616|gb|EEX61437.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
          Length = 384

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A  A    D + VDTE +        LC++Q++  D T  +  +A G 
Sbjct: 1   MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DE+  K+FH  R DI ++F+   +   PVF T++A+ +   + +     
Sbjct: 61  DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++ G ++ K+ + +DW    LSD+QL YA +DV +L  + L   E+LQ+ GRS+  
Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   DL     W  V 
Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203


>gi|62289703|ref|YP_221496.1| RND, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
 gi|148560669|ref|YP_001258731.1| ribonuclease D [Brucella ovis ATCC 25840]
 gi|163843022|ref|YP_001627426.1| ribonuclease D [Brucella suis ATCC 23445]
 gi|189023953|ref|YP_001934721.1| Rnd, ribonuclease D [Brucella abortus S19]
 gi|225627251|ref|ZP_03785288.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|237815192|ref|ZP_04594190.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|254693498|ref|ZP_05155326.1| Rnd, ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|254697150|ref|ZP_05158978.1| Rnd, ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701527|ref|ZP_05163355.1| Rnd, ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|254707023|ref|ZP_05168851.1| Rnd, ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|254709868|ref|ZP_05171679.1| Rnd, ribonuclease D [Brucella pinnipedialis B2/94]
 gi|254713869|ref|ZP_05175680.1| Rnd, ribonuclease D [Brucella ceti M644/93/1]
 gi|254717074|ref|ZP_05178885.1| Rnd, ribonuclease D [Brucella ceti M13/05/1]
 gi|254730046|ref|ZP_05188624.1| Rnd, ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|256031360|ref|ZP_05444974.1| Rnd, ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|256060870|ref|ZP_05451030.1| Rnd, ribonuclease D [Brucella neotomae 5K33]
 gi|256257265|ref|ZP_05462801.1| Rnd, ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|256369183|ref|YP_003106691.1| ribonuclease D [Brucella microti CCM 4915]
 gi|260168494|ref|ZP_05755305.1| ribonuclease D [Brucella sp. F5/99]
 gi|260545541|ref|ZP_05821282.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260757729|ref|ZP_05870077.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|260761554|ref|ZP_05873897.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883537|ref|ZP_05895151.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|261213756|ref|ZP_05928037.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|261218885|ref|ZP_05933166.1| ribonuclease D [Brucella ceti M13/05/1]
 gi|261314491|ref|ZP_05953688.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|261317409|ref|ZP_05956606.1| ribonuclease D [Brucella pinnipedialis B2/94]
 gi|261321616|ref|ZP_05960813.1| ribonuclease D [Brucella ceti M644/93/1]
 gi|261324867|ref|ZP_05964064.1| ribonuclease D [Brucella neotomae 5K33]
 gi|261752075|ref|ZP_05995784.1| ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|261757962|ref|ZP_06001671.1| ribonuclease D [Brucella sp. F5/99]
 gi|265988446|ref|ZP_06101003.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|297248110|ref|ZP_06931828.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
 gi|62195835|gb|AAX74135.1| Rnd, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
 gi|148371926|gb|ABQ61905.1| ribonuclease D [Brucella ovis ATCC 25840]
 gi|163673745|gb|ABY37856.1| ribonuclease D [Brucella suis ATCC 23445]
 gi|189019525|gb|ACD72247.1| Rnd, ribonuclease D [Brucella abortus S19]
 gi|225617256|gb|EEH14301.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|237790029|gb|EEP64239.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|255999343|gb|ACU47742.1| ribonuclease D [Brucella microti CCM 4915]
 gi|260096948|gb|EEW80823.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668047|gb|EEX54987.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|260671986|gb|EEX58807.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|260873065|gb|EEX80134.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|260915363|gb|EEX82224.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|260923974|gb|EEX90542.1| ribonuclease D [Brucella ceti M13/05/1]
 gi|261294306|gb|EEX97802.1| ribonuclease D [Brucella ceti M644/93/1]
 gi|261296632|gb|EEY00129.1| ribonuclease D [Brucella pinnipedialis B2/94]
 gi|261300847|gb|EEY04344.1| ribonuclease D [Brucella neotomae 5K33]
 gi|261303517|gb|EEY07014.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|261737946|gb|EEY25942.1| ribonuclease D [Brucella sp. F5/99]
 gi|261741828|gb|EEY29754.1| ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|264660643|gb|EEZ30904.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|297175279|gb|EFH34626.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
          Length = 385

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A  A    D + VDTE +        LC++Q++  D T  +  +A G 
Sbjct: 1   MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DE+  K+FH  R DI ++F+   +   PVF T++A+ +   + +     
Sbjct: 61  DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++ G ++ K+ + +DW    LSD+QL YA +DV +L  + L   E+LQ+ GRS+  
Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   DL     W  V 
Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203


>gi|82699633|ref|YP_414207.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|82615734|emb|CAJ10730.1| HRDC domain:3'-5' exonuclease:Ribonuclease D [Brucella melitensis
           biovar Abortus 2308]
          Length = 385

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A  A    D + VDTE +        LC++Q++  D T  +  +A G 
Sbjct: 1   MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDELAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DE+  K+FH  R DI ++F+   +   PVF T++A+ +   + +     
Sbjct: 61  DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++ G ++ K+ + +DW    LSD+QL YA +DV +L  + L   E+LQ+ GRS+  
Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   DL     W  V 
Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203


>gi|33863970|ref|NP_895530.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313]
 gi|33635554|emb|CAE21878.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313]
          Length = 214

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/208 (43%), Positives = 128/208 (61%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
            +  V +GD+ ++ A RY    AIAVDTE +GL+  RDRLC+VQ+      V  +RI  G
Sbjct: 9   ASFVVFDGDLDSDWANRYLRASAIAVDTEAMGLIHGRDRLCLVQICDPADNVACVRIGLG 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q +AP L  ++     EK+FH+ RFD+A L    G+ V P+FCTK+ASRL RTY+ +HGL
Sbjct: 69  QTSAPRLQKLMEAPSVEKVFHFARFDVAALASGLGIYVLPIFCTKVASRLARTYSPRHGL 128

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K+ + EL+G+ + K  QSSDW   ++LSD QL YAA+D  +L   R +    L+R GR +
Sbjct: 129 KEVVMELVGVELDKQAQSSDWGRVEELSDVQLAYAANDARYLLPARQRLEMMLRREGRWE 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           +A  C + +   AELD L +    IF H
Sbjct: 189 IAQRCFSCIPVIAELDRLRFTQ--IFEH 214


>gi|17231283|ref|NP_487831.1| ribonuclease D [Nostoc sp. PCC 7120]
 gi|17132925|dbj|BAB75490.1| ribonuclease D [Nostoc sp. PCC 7120]
          Length = 209

 Score =  252 bits (644), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/209 (44%), Positives = 133/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+     A+Y   +AIAVDTET+GL+P+RDRLC++QL   +G V  IRIA 
Sbjct: 3   LQDFQVGDRDLSDATVAQYLQSEAIAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRIAQ 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  APNL  +L      K+FH+ RFD+A L +   + V+P+FCTKIAS+L RTYTN+HG
Sbjct: 63  GQTAAPNLKKLLEATNVLKVFHFARFDVATLLHHLDIHVQPIFCTKIASKLARTYTNRHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + EL  + + K+ Q SDW  A +L++ QL YAA+DV +L + + +    L+R  R 
Sbjct: 123 LKDLVHELEQVELDKSAQGSDWGNAANLTEAQLSYAANDVRYLLSAQQKLVAMLKREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C   L     LDLL ++  D+F H
Sbjct: 183 ELAQQCFQVLPTIVSLDLLQFK--DLFEH 209


>gi|220907657|ref|YP_002482968.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
 gi|219864268|gb|ACL44607.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
          Length = 217

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/208 (47%), Positives = 138/208 (66%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           T  +V++ D+PA+  + +   D IAVDTET+GL P+RDRLC+VQL+   G + +IRI  G
Sbjct: 12  TDFQVYDRDLPADTLSYFLTADRIAVDTETMGLKPQRDRLCLVQLAHPQGLITVIRIGQG 71

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q++AP+L  +L      K+FH+ RFDI  L Y   + V+P+FCTKIAS+L RTY+ +HGL
Sbjct: 72  QRSAPHLKQLLEHPGTTKVFHFARFDITTLRYHLDIWVQPLFCTKIASKLARTYSPRHGL 131

Query: 120 KDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           KD ++EL G+ + K  QSSDW    +L++EQL+YA++DV +L A + +  E LQR  R  
Sbjct: 132 KDLIRELEGVELDKTVQSSDWGNPNNLTEEQLRYASNDVRYLLAAQAKLVEMLQRENRWQ 191

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C + L   A LDLL +E   IF H
Sbjct: 192 LAQECFHCLPTLASLDLLEFEA--IFEH 217


>gi|282899306|ref|ZP_06307275.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195763|gb|EFA70691.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 209

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 98/209 (46%), Positives = 137/209 (65%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V +GD+     + Y   DA+AVDTET+GL+P+RDRLC+VQL   +G V  +RIA 
Sbjct: 3   LDDFQVVDGDLDYPTLSEYLRSDALAVDTETMGLLPQRDRLCLVQLCNPEGKVTAVRIAK 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ +APNL  +L      K+FH+ RFD+A L +   + V+PVFCTKIAS+L RTYTN+HG
Sbjct: 63  GQTHAPNLQQLLESTDVVKVFHFARFDLATLRHNLKIHVQPVFCTKIASKLARTYTNRHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK+ ++EL  + + K+ QSSDW     LSD QL YAA+DV +L +L+ + ++ LQR  R 
Sbjct: 123 LKELVQELEQVELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C +FL     LDLL ++ +  F H
Sbjct: 183 QLAQECFSFLPTLVSLDLLQFKEL--FEH 209


>gi|260436505|ref|ZP_05790475.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
 gi|260414379|gb|EEX07675.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
          Length = 225

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 125/206 (60%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V + D+ A    RY     +AVDTE +GL+  RDRLC+VQ++  +  V  +RI  GQ 
Sbjct: 22  FAVFDRDLDAAWTERYLQSPRLAVDTEAMGLIHGRDRLCLVQIADAEDRVACVRIGLGQT 81

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +L     EK+FH+ RFD+A L    G+ V PVFCTK+ SRL RTYT +HGLKD
Sbjct: 82  EAPNLKRLLEAPTVEKVFHFARFDVAALAAGLGIEVNPVFCTKVGSRLGRTYTPRHGLKD 141

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL+G+ + K  QSSDW   D+L+D QL YAA+DV +L   R +  + L+R GR DLA
Sbjct: 142 LVMELVGVELDKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEKMLRREGRWDLA 201

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   +   AELD L +    IF H
Sbjct: 202 QRCFQCVPVVAELDRLRFHQ--IFEH 225


>gi|282897776|ref|ZP_06305775.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
 gi|281197455|gb|EFA72352.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
          Length = 209

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 98/209 (46%), Positives = 137/209 (65%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V +GD+     + Y   DA+AVDTET+GL+P+RDRLC+VQL   +G V  +RIA 
Sbjct: 3   LDDFQVLDGDLDHPTLSEYLRSDALAVDTETMGLVPQRDRLCLVQLCNPEGKVTAVRIAK 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ +APNL  +L      K+FH+ RFD+A L +   + V+PVFCTKIAS+L RTYTN+HG
Sbjct: 63  GQTHAPNLQQLLESTHVVKVFHFARFDLATLRHNLKIYVQPVFCTKIASKLARTYTNRHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK+ ++EL  + + K+ QSSDW     LSD QL YAA+DV +L +L+ + ++ LQR  R 
Sbjct: 123 LKELVQELEQLELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            L   C +FL     LDLL ++  D+F H
Sbjct: 183 QLVQECFSFLPTLVSLDLLQFK--DLFEH 209


>gi|17987486|ref|NP_540120.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
 gi|225852267|ref|YP_002732500.1| ribonuclease D [Brucella melitensis ATCC 23457]
 gi|256044440|ref|ZP_05447344.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113284|ref|ZP_05454152.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|256264225|ref|ZP_05466757.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
 gi|260563791|ref|ZP_05834277.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990860|ref|ZP_06103417.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994696|ref|ZP_06107253.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|17983183|gb|AAL52384.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
 gi|225640632|gb|ACO00546.1| ribonuclease D [Brucella melitensis ATCC 23457]
 gi|260153807|gb|EEW88899.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|262765809|gb|EEZ11598.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|263001644|gb|EEZ14219.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094471|gb|EEZ18293.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
 gi|326408773|gb|ADZ65838.1| ribonuclease D [Brucella melitensis M28]
 gi|326538491|gb|ADZ86706.1| ribonuclease D [Brucella melitensis M5-90]
          Length = 385

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A  A    D + VDTE +        LC++Q++  D T  +  +A G 
Sbjct: 1   MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DE+  K+FH  R DI ++F+   +   PVF T++A+ +   + +     
Sbjct: 61  DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++ G ++ K+ + +DW    LSD+QL YA +DV +L  + L   E+LQ+ GRS+  
Sbjct: 119 QLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   DL     W  V 
Sbjct: 179 NEEIAVLTARQTYDLHPDDAWRRVK 203


>gi|332709748|ref|ZP_08429707.1| ribonuclease D [Lyngbya majuscula 3L]
 gi|332351575|gb|EGJ31156.1| ribonuclease D [Lyngbya majuscula 3L]
          Length = 216

 Score =  250 bits (640), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 130/209 (62%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+P      Y   D++AVDTET+GL+ +RDRLC+VQL    G V  +RI  
Sbjct: 10  LKDFQVCDRDLPESICQEYLRADSLAVDTETMGLIYQRDRLCLVQLCDPQGRVTFVRIDK 69

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  AP L  +L      K+FH+ RFD+A+L    G+ V PVFCTKIAS+L RTYT+ HG
Sbjct: 70  GQTEAPRLKQLLEATNVLKVFHFARFDVAMLRQNLGIDVNPVFCTKIASKLARTYTSSHG 129

Query: 119 LKDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK+ +KEL  I++ K+ QSSDW    +LSD+QL+YAA+DV +L  +R +    L+R  R 
Sbjct: 130 LKELVKELERIDLDKSAQSSDWGNVANLSDQQLEYAANDVRYLLNVRQKLINMLEREDRW 189

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C   L     LDLL +   D+F H
Sbjct: 190 ELAQQCFEALPTMVSLDLLHYR--DVFEH 216


>gi|75908135|ref|YP_322431.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
 gi|75701860|gb|ABA21536.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
          Length = 209

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 133/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+      +Y   +AIAVDTET+GL+P+RDRLC++QL   +G V  IRIA 
Sbjct: 3   LQDFQVGDRDLSDAAVDQYLQSEAIAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRIAR 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  APNL  +L      K+FH+ RFD+A L +   + V+P+FCTKIAS+L RTYTN+HG
Sbjct: 63  GQTAAPNLKKLLEATNVLKVFHFARFDVATLRHHLDIHVQPIFCTKIASKLARTYTNRHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + EL  + + K+ QSSDW  A +L+D QL YAA+DV +L + + +    L+R  R 
Sbjct: 123 LKDLVYELEQVELDKSAQSSDWGNAANLTDAQLSYAANDVRYLLSAQQKLVAMLKREERW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C   L     LDLL ++  D+F H
Sbjct: 183 ELAQQCFQVLPTIVSLDLLQFK--DLFEH 209


>gi|288958469|ref|YP_003448810.1| ribonuclease D [Azospirillum sp. B510]
 gi|288910777|dbj|BAI72266.1| ribonuclease D [Azospirillum sp. B510]
          Length = 396

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 2/193 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT I   +       +    + I VDTE L       +LC+VQ+   DG V I  +A G 
Sbjct: 1   MTLITTTDALQAFCQSLAGTEYITVDTEFLREKTYWPQLCLVQVGGPDGAVAIDPLAEGI 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P L  ++ D    K+FH  R D+ + ++  G    P+F T++A+ +   +    G +
Sbjct: 61  DLTP-LFALMSDPSVLKVFHAARQDVEIFWHLSGQIPHPLFDTQVAAMVC-GFGESVGYE 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + +L G  I K+ + +DWS   L++ QL YA SDV+HL     +   +L R GRS   
Sbjct: 119 TLVTKLAGARIDKSSRFTDWSHRPLTERQLTYALSDVIHLRPAYEKLKRRLARSGRSHWL 178

Query: 181 TSCCNFLMDRAEL 193
                 L D A  
Sbjct: 179 EEEMAILTDPATY 191


>gi|294852115|ref|ZP_06792788.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|294820704|gb|EFG37703.1| ribonuclease D [Brucella sp. NVSL 07-0026]
          Length = 385

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A  A    D + VDTE +        LC++Q++  D T  +  +A G 
Sbjct: 1   MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DE+  K+FH  R DI ++F+   +   PVF T++A+ +   + +     
Sbjct: 61  DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++   ++ K+ + +DW    LSD+QL YA +DV +L  + L   E+LQ+ GRS+  
Sbjct: 119 QLVQKVTSKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   DL     W  V 
Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203


>gi|256159482|ref|ZP_05457250.1| Rnd, ribonuclease D [Brucella ceti M490/95/1]
 gi|256254768|ref|ZP_05460304.1| Rnd, ribonuclease D [Brucella ceti B1/94]
 gi|261221947|ref|ZP_05936228.1| ribonuclease D [Brucella ceti B1/94]
 gi|265997910|ref|ZP_06110467.1| ribonuclease D [Brucella ceti M490/95/1]
 gi|260920531|gb|EEX87184.1| ribonuclease D [Brucella ceti B1/94]
 gi|262552378|gb|EEZ08368.1| ribonuclease D [Brucella ceti M490/95/1]
          Length = 385

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A  A    D + VDTE +        LC++Q++  D T  +  +A G 
Sbjct: 1   MQLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DE+  K+FH  R DI ++F+   +   PVF T++A+ +   + +     
Sbjct: 61  DLAP-FFRLMADEEIVKVFHAARQDIEIVFHLGNLIPSPVFDTQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++ G ++ K+ + +DW    LSD+QL YA +DV +L  + L   E+LQ+ GRS+  
Sbjct: 119 QLMQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   DL     W  V 
Sbjct: 179 NEEMAVLTARQTYDLHPDDAWRRVK 203


>gi|56697032|ref|YP_167394.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
 gi|56678769|gb|AAV95435.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
          Length = 385

 Score =  249 bits (637), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M T+     ++ A C AA     + VDTE L       +LC++QL+      D  V +  
Sbjct: 1   MKTLTTT-PELAAFCKAAASHAYVTVDTEFLRERTYYSKLCLIQLAYPGEDADSAVLVDP 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           +A G +  P L  +  D    K+FH  R D+ + +   GV   P+F T++A+ +   +  
Sbjct: 60  LAEGLELEP-LYTLFRDTSVVKVFHAARQDLEIFWVDAGVFPEPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  ++++    + K  + +DWS   LSD Q  YA +DV HL  +       L + G
Sbjct: 118 QVGYETLVRKICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAADLAKTG 177

Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           RS         L D A  D+     W  +   ++S
Sbjct: 178 RSHWVAEELRTLTDPATYDIRPEEAWRRIKTRTNS 212


>gi|99081315|ref|YP_613469.1| ribonuclease D [Ruegeria sp. TM1040]
 gi|99037595|gb|ABF64207.1| ribonuclease D [Ruegeria sp. TM1040]
          Length = 385

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M T+   + ++ A C  A     + VDTE L       +LC++Q++    G+    ++  
Sbjct: 1   MKTLTTTD-ELRAFCQEAAKYPYVTVDTEFLRERTYYSKLCLIQIAYRGDGETDAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            +G  +   L  +  +E   K+FH  R D+ + +   GV  +P+F T++A+ +   +  Q
Sbjct: 60  LSGDLSLEPLYELFRNEDVVKVFHAARQDLEIFWVDAGVFPKPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++    + K  + +DWS   LSD Q  YA +DV HL  +     ++L +  R
Sbjct: 119 VGYETLVRKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLRKELDKTKR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           S         L D A  ++     W  V   ++S
Sbjct: 179 SHWVAEELQVLTDPATYNIQPREAWRRVKTRTNS 212


>gi|119487500|ref|ZP_01621110.1| ribonuclease D [Lyngbya sp. PCC 8106]
 gi|119455669|gb|EAW36805.1| ribonuclease D [Lyngbya sp. PCC 8106]
          Length = 208

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/209 (44%), Positives = 132/209 (63%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M+  +V + DI  +  + Y   D +AVDTET+GL+P RDRLC+VQL    G V  ++IA 
Sbjct: 1   MSNFQVCDRDISEDILSSYLTADRLAVDTETMGLLPWRDRLCLVQLCDPKGQVTAVKIAK 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
            Q  AP+L  +L      K+FH+ RFD+A L Y   + V PVFCTKIAS+L RTYT +HG
Sbjct: 61  DQTEAPHLKKLLEASNTLKVFHFARFDMATLLYYLDIDVNPVFCTKIASKLARTYTGRHG 120

Query: 119 LKDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LK+ ++EL  + + K+ QSSDW    +LS++QL YAA+DV +L  ++ +    L+R  R 
Sbjct: 121 LKELVQELEQVELDKSSQSSDWGNVGNLSEDQLNYAANDVRYLLNVQQKLMVMLEREERL 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           DLA +C + L     LDLL ++  DIF H
Sbjct: 181 DLAQNCFDCLPTIVTLDLLHYK--DIFEH 207


>gi|259416057|ref|ZP_05739977.1| ribonuclease D [Silicibacter sp. TrichCH4B]
 gi|259347496|gb|EEW59273.1| ribonuclease D [Silicibacter sp. TrichCH4B]
          Length = 385

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M T+   + ++ A C  A     + VDTE L       +LC++Q++    G     ++  
Sbjct: 1   MKTLTTTD-ELRAFCEEAANYPYVTVDTEFLRERTYYSKLCLIQIAFRGDGKTDAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            +   +   L  +  +E   K+FH  R D+ + +    V  +P+F T++A+ +   +  Q
Sbjct: 60  LSSDLSLEPLYELFRNEDVVKVFHAARQDLEIFWVDASVFPKPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++    + K  + +DWS   LSD Q  YA +DV HL  +     ++L + GR
Sbjct: 119 VGYETLVRKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLRKELDKTGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           S         L D A  D+     W  V   ++S
Sbjct: 179 SHWVAEELQVLTDPATYDIQPREAWRRVKTRTNS 212


>gi|318042597|ref|ZP_07974553.1| ribonuclease [Synechococcus sp. CB0101]
          Length = 234

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 121/206 (58%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V +GD+  E         A+AVDTE +GL+  RDRLC+VQ+S     V  IRI  GQ 
Sbjct: 29  FAVLDGDLTPEWHELLGRSSALAVDTEAMGLVHGRDRLCLVQISDDQDNVCCIRILRGQS 88

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            AP L  ++      K+FH+ RFD+A L    G+ V P+FCTK+ASRL RTYTN+HGLK+
Sbjct: 89  EAPLLKQLMEHSGIVKVFHFARFDVAALGEGLGIAVNPLFCTKVASRLARTYTNRHGLKE 148

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL G+ + K  QSSDW   ++LS+ QL YAA+DV +L   R + T+ L+R  R DLA
Sbjct: 149 LVSELCGVELDKGAQSSDWGRVEELSETQLAYAANDVRYLLPARERLTQMLEREERLDLA 208

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
                 +   AELD   +    IF H
Sbjct: 209 QRSFQCIPVIAELDRGRFGA--IFEH 232


>gi|209548705|ref|YP_002280622.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534461|gb|ACI54396.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 381

 Score =  247 bits (633), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP 
Sbjct: 4   TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  
Sbjct: 63  FFELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  ++I K+ + +DWS   LSD+QL+YA +DV HL  + L    +L R GR+   +   +
Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEMD 181

Query: 186 FLMDRAELDLL---GWENVD 202
            L  R   DL     W+ + 
Sbjct: 182 ILEARETYDLHPDDAWQRLK 201


>gi|116075800|ref|ZP_01473059.1| putative ribonuclease D [Synechococcus sp. RS9916]
 gi|116067115|gb|EAU72870.1| putative ribonuclease D [Synechococcus sp. RS9916]
          Length = 214

 Score =  247 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 126/206 (61%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V +GD+ A  A RY    A+AVDTE +GL+  RDRLC+VQ+   D  V  +RI  GQ 
Sbjct: 11  FAVFDGDLDAAWAERYGRAKALAVDTEAMGLIHGRDRLCLVQICDPDDHVACVRIGLGQT 70

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            AP L  ++  +  EK+FH+ RFD+A L    G+ V P+FCTK+ASRL RTYT +HGLKD
Sbjct: 71  EAPRLEALMESKAVEKVFHFARFDVAALASGLGIAVNPIFCTKVASRLARTYTPRHGLKD 130

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL+G+ + K  QSSDW   D+L++ QL YAA+D  +L   R +    L+R GR +LA
Sbjct: 131 LVMELVGVELDKQAQSSDWGRVDELTEAQLAYAANDARYLLPARDRLELMLRREGRWELA 190

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   +   A+LD L +  V  F H
Sbjct: 191 ERCFPCIPVIADLDRLRFNQV--FEH 214


>gi|78211959|ref|YP_380738.1| 3'-5' exonuclease [Synechococcus sp. CC9605]
 gi|78196418|gb|ABB34183.1| 3'-5' exonuclease [Synechococcus sp. CC9605]
          Length = 214

 Score =  247 bits (633), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 123/206 (59%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V + D+ A    RY     +AVDTE +GL+  RDRLC+VQ++  +  V  +RI  GQ 
Sbjct: 11  FAVFDRDLDAAWTERYLQSPRLAVDTEAMGLIHGRDRLCLVQIADAEDRVACVRIGLGQT 70

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +      EK+FH+ RFD+A L     + V PVFCTK+ SRL RTYT +HGLKD
Sbjct: 71  EAPNLKRLFEAPTVEKVFHFARFDVAALAAGLSIEVNPVFCTKVGSRLGRTYTPRHGLKD 130

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL+G+ + K  QSSDW   D+L+D QL YAA+DV +L   R +  + L+R GR DLA
Sbjct: 131 LVMELVGVELDKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEQMLRREGRWDLA 190

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   +   AELD L +    IF H
Sbjct: 191 QRCFQCVPVVAELDRLRFHQ--IFEH 214


>gi|113955257|ref|YP_729699.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311]
 gi|113882608|gb|ABI47566.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311]
          Length = 214

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 91/208 (43%), Positives = 126/208 (60%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
               V +GD+ A+ A RY    A+AVDTE +GL+  RDRLC+VQ+   +  V  +RIA G
Sbjct: 9   RAFAVFDGDLDADWAERYSHATALAVDTEAMGLIHGRDRLCLVQICDAEDQVSCVRIALG 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q  AP L  ++     EK+FH+ RFD+A L    G+RV P+FCTK+ SRL RTY+ +HGL
Sbjct: 69  QTEAPRLKELMERASIEKVFHFARFDVAALATGLGIRVNPIFCTKVGSRLARTYSPRHGL 128

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K+ + EL+G+ + K  QSSDW   D+LS+ QL YAA+D  +L   R +  E LQR GR +
Sbjct: 129 KEVVMELVGVELDKQAQSSDWGRVDELSETQLAYAANDARYLLPARDRLKEMLQREGRWE 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   ++LD   +     F H
Sbjct: 189 LAERCFECIPVMSDLDRFRFNQ--TFEH 214


>gi|254512186|ref|ZP_05124253.1| ribonuclease D [Rhodobacteraceae bacterium KLH11]
 gi|221535897|gb|EEE38885.1| ribonuclease D [Rhodobacteraceae bacterium KLH11]
          Length = 385

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M T+   +  + A CA A     + VDTE L       +LC+VQL+    GD +  ++  
Sbjct: 1   MKTLTTTQ-QLAAFCAEAAQYPYVTVDTEFLRERTYYSKLCLVQLAVPAEGDDSAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            A   +   L  +  +E   K+FH  R D+ + +   GV   P+F T++A+ +   +  Q
Sbjct: 60  LAEGMSLDPLYELFRNESVVKVFHAARQDLEIFWVDAGVFPTPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++    + K  + +DWS   L++ Q  YA +DV HL  +      +L++  R
Sbjct: 119 VGYETLVRKICKEGVDKTSRFTDWSRRPLTEAQKSYALADVTHLRKIYEYLAGELKKTKR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
                     L      D+     W  V   ++S
Sbjct: 179 DHWVAEELRILTRAETYDIRPEEAWRRVKTRTNS 212


>gi|33866568|ref|NP_898127.1| putative ribonuclease D [Synechococcus sp. WH 8102]
 gi|33633346|emb|CAE08551.1| putative ribonuclease D [Synechococcus sp. WH 8102]
          Length = 214

 Score =  247 bits (631), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 128/206 (62%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V +GD+ A+   RY+   A+AVDTE +GL+  RDRLC+VQ++  D  V  IRI  GQ 
Sbjct: 11  FAVFDGDLDADWTERYLRMSALAVDTEAMGLIHGRDRLCLVQIADADDRVCCIRIGLGQT 70

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +APNL  +L     EK+FH+ RFD+A L    G+ V P+FCTK+ SRL RTYT +HGLKD
Sbjct: 71  SAPNLQRLLEAASVEKVFHFARFDVAALASGLGIAVSPIFCTKVGSRLGRTYTPRHGLKD 130

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL+G+ + K  QSSDW   D+LSD QL YAA+DV +L   R +    L+R GR DLA
Sbjct: 131 LVMELVGVELDKGAQSSDWGRVDELSDVQLAYAANDVRYLLPARQKLEAMLRREGRWDLA 190

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   +   A+LD + +     F H
Sbjct: 191 QRCFGCIPVIADLDRMRFNQ--TFEH 214


>gi|298491354|ref|YP_003721531.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
 gi|298233272|gb|ADI64408.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
          Length = 209

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/209 (46%), Positives = 135/209 (64%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +   +V + D+ A   + Y   +AIAVDTET+GL+P+RDRLC+VQL    G V  I IA 
Sbjct: 3   LPDFQVSDRDLDAASLSEYLQSEAIAVDTETMGLLPQRDRLCLVQLCNSQGKVTAICIAK 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           GQ  APNL  +L      K+FH+ RFD+A L +   ++V+PVFCTKIAS+L RTYTN HG
Sbjct: 63  GQTEAPNLKQLLEATHILKVFHFARFDVATLRHNLEIQVQPVFCTKIASKLARTYTNLHG 122

Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD ++EL  + + K+ QSSDW    +LS+ QL YAA+DV +L  ++ + T+ L+R GR 
Sbjct: 123 LKDVVQELEQVELDKSAQSSDWGNAVNLSETQLSYAANDVRYLLNVQQKLTQMLEREGRW 182

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
           +LA  C   L     LDLL ++  D+F H
Sbjct: 183 ELAQQCFQVLPTLVSLDLLQFK--DLFEH 209


>gi|89069870|ref|ZP_01157204.1| ribonuclease D [Oceanicola granulosus HTCC2516]
 gi|89044546|gb|EAR50665.1| ribonuclease D [Oceanicola granulosus HTCC2516]
          Length = 385

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M TI   E D+   CA A     + VDTE L        LC+VQL+    G     ++  
Sbjct: 1   MRTITTTE-DLATFCAEAAKAPYVTVDTEFLRERTYYPHLCLVQLAYPGDGKTDAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
             G  +   L  +  D    K+FH  R D+ + ++   V   P+F T++A+ +   +  Q
Sbjct: 60  LEGGLDLAPLYALFQDHGVVKVFHAARQDLEIFWHGGQVIPEPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++   N+ K+ + +DWS   LS+ Q +YA +DV HL  +  +   +L + GR
Sbjct: 119 VGYETLVRKIARENLDKSSRFTDWSRRPLSEAQKRYALADVTHLRVIYEELKAELDKSGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
                     L D A   +     W+ V   ++S
Sbjct: 179 IKWLAEEMAILKDPATYVVQPDEAWQRVKTRTNS 212


>gi|15604287|ref|NP_220803.1| hypothetical protein RP422 [Rickettsia prowazekii str. Madrid E]
 gi|3860979|emb|CAA14879.1| unknown [Rickettsia prowazekii]
 gi|292572036|gb|ADE29951.1| Ribonuclease D [Rickettsia prowazekii Rp22]
          Length = 203

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/204 (46%), Positives = 129/204 (63%), Gaps = 2/204 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            I++++ D+P+         IAVDTET+GL   RD+LC++Q S G+G   ++        
Sbjct: 2   NIKIYQNDLPSNFKLE--GDIAVDTETMGLNIHRDKLCLLQFSNGNGEAHLVHFINQDYT 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L+D+ R KIFH+ RFD+A +     + +  +FCTKI+S+L RTYT+ HGLKD 
Sbjct: 60  APNLKMLLLDKTRCKIFHFARFDLASIKKYLSIDLENIFCTKISSKLVRTYTDSHGLKDL 119

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +ELL INISK QQSS W  D LS EQ +YAA DV++LH L+    + L R  R +LA  
Sbjct: 120 CRELLNINISKQQQSSYWGTDHLSLEQKEYAAKDVLYLHQLKDILQKMLLRENRLELAHD 179

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
              FL  R  LDL+GW+ +DIF H
Sbjct: 180 IFRFLPTRVHLDLIGWDQIDIFMH 203


>gi|239831578|ref|ZP_04679907.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
 gi|239823845|gb|EEQ95413.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
          Length = 385

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A  A    D + VDTE +        LC++Q++  + T  +  +A G 
Sbjct: 1   MHLITTTEALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPNHTALVDALAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DEK  K+FH  R DI ++F+   +   PVF +++A+ +   + +     
Sbjct: 61  DLAP-FFSLMADEKVVKVFHAARQDIEIVFHLGDLIPSPVFDSQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++ G +I K+ + +DW    LS++QL YA +DV +L  + L   ++L++ GRS+  
Sbjct: 119 QLVQKVTGKHIDKSSRFTDWRRRPLSEKQLDYALADVTYLRDIYLYLKQELEKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   DL     W  V 
Sbjct: 179 NEEMAVLTSRETYDLHPDDAWRRVK 203


>gi|254409855|ref|ZP_05023636.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196183852|gb|EDX78835.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 207

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/209 (46%), Positives = 130/209 (62%), Gaps = 5/209 (2%)

Query: 1   MTTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M   +V + D+P      Y   +AIAVDTET+GL+ +RDRLC+VQL      V +IRI  
Sbjct: 1   MAEFQVCDRDLPDALLKTYLNAEAIAVDTETMGLIYQRDRLCLVQLCDPQDRVTVIRIDK 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
            Q  APNL  +L  +   K+FH+ RFD+A+L     + V+PVFCTKIAS+L RTYTN+HG
Sbjct: 61  KQTEAPNLKQLLEAQTVLKVFHFARFDLAILRQNLDIYVQPVFCTKIASKLARTYTNRHG 120

Query: 119 LKDNLKELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LKD + +L  + + K+ QSSDW    +LSDEQL+YAA+DV +L ++R +    LQR  R 
Sbjct: 121 LKDLVMDLEQVELDKSSQSSDWGNPNNLSDEQLRYAANDVRYLLSVRQKLITMLQREERW 180

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA  C   L     LDLL +   DIF H
Sbjct: 181 QLAQECFEALSVMVSLDLLLYR--DIFEH 207


>gi|153009869|ref|YP_001371084.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
 gi|151561757|gb|ABS15255.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
          Length = 385

 Score =  246 bits (629), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +    A  A    D + VDTE +        LC++Q++  D T  +  +A G 
Sbjct: 1   MHLITTTQALEEAVSALAKSDFVTVDTEFIRETTFWPELCLIQMASPDHTALVDALAPGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DE   K+FH  R DI ++F+   +   PVF +++A+ +   + +     
Sbjct: 61  DLAP-FFRLMADETIVKVFHAARQDIEIVFHLGDLIPSPVFDSQVAAMVC-GFGDAISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++ G  I K+ + +DW    LSD+QL YA +DV +L  + L   E+L++ GRS+  
Sbjct: 119 QLVQKVTGKQIDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELEKEGRSEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   D+     W  V 
Sbjct: 179 NEEMAVLTSRETYDMHPDDAWRRVK 203


>gi|254454077|ref|ZP_05067514.1| ribonuclease D [Octadecabacter antarcticus 238]
 gi|198268483|gb|EDY92753.1| ribonuclease D [Octadecabacter antarcticus 238]
          Length = 395

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M TI     ++   CA A     + VDTE L       +LC++QL+     GD  V +  
Sbjct: 11  MKTITTT-AELATYCAQAAKYPYVTVDTEFLRERTYYSKLCLIQLAYMGEGGDDAVLVDP 69

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           +A G   AP L  +  DE   K+FH  R D+ + F   G+  +P+F T++A+ +   +  
Sbjct: 70  LAEGLDLAP-LYELFKDENVVKVFHAARQDLEIFFVDQGIIPKPLFDTQVAAMVC-GFGE 127

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  ++++   N+ K+ + +DWS   L+D Q  YA +DV HL  +    + +L++ G
Sbjct: 128 QAGYETLVRKIAKDNVDKSSRFTDWSRRPLTDAQKTYALADVTHLRVIYENLSAELEKSG 187

Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
           R          L D A         W+ V   + S
Sbjct: 188 RKKWVAEEMAVLNDPATYQADPDNAWKRVKTRTSS 222


>gi|87124930|ref|ZP_01080777.1| putative ribonuclease D [Synechococcus sp. RS9917]
 gi|86167250|gb|EAQ68510.1| putative ribonuclease D [Synechococcus sp. RS9917]
          Length = 213

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/208 (44%), Positives = 125/208 (60%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
               V +GD+ A  A RY  A  +AVDTE +GL+  RDRLC+VQL  GD  V  +RI  G
Sbjct: 8   RDFAVFDGDLDAAWADRYAKASRLAVDTEAMGLVHGRDRLCLVQLCDGDDNVSCVRIGLG 67

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q  AP L  ++     EK+FH+ RFD+A L    G+ V P+FCTK+ASRL RTY+ +HGL
Sbjct: 68  QCEAPRLKALMEAAAVEKVFHFARFDVAALASGLGIAVDPIFCTKVASRLARTYSPKHGL 127

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K+ + EL+G+ + K  QSSDW   ++LS+ QL YAA+D  +L   R +    L+R GR +
Sbjct: 128 KEVVLELVGVELDKQAQSSDWGRVEELSEAQLAYAANDARYLLPARERLEVMLRREGRWE 187

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   +ELD L +     F H
Sbjct: 188 LAQRCFRCIPVMSELDRLRFAQ--TFEH 213


>gi|114326875|ref|YP_744031.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
 gi|114315049|gb|ABI61109.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
          Length = 429

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 88/193 (45%), Gaps = 3/193 (1%)

Query: 2   TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
            T+     D+ A C   R    + +DTE +        LC+VQL   D    I  +A   
Sbjct: 46  PTLITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPEL 105

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    +L D    K+FH  R DI +    FG   +P+F T++A+ +   + +Q G  
Sbjct: 106 DLAPV-GELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVA-GFGDQVGYD 163

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             +  L G +I KA + SDWS   LS  Q+ YAA+DV HL  +     ++L++ GR    
Sbjct: 164 TLVSSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEGRLAWV 223

Query: 181 TSCCNFLMDRAEL 193
           +     L D A  
Sbjct: 224 SEEMAVLNDPATY 236


>gi|78185488|ref|YP_377923.1| 3'-5' exonuclease [Synechococcus sp. CC9902]
 gi|78169782|gb|ABB26879.1| 3'-5' exonuclease [Synechococcus sp. CC9902]
          Length = 214

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 124/206 (60%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V +GD+ A    RY+    +AVDTE +GL+  RDRLC+VQ++     V  +RIA GQ 
Sbjct: 11  FAVFDGDLDASWTERYLQMPCLAVDTEAMGLIHGRDRLCLVQIADAQDRVACVRIALGQS 70

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +      EK+FH+ RFD+A L     + V+P+FCTK+ SRL RTYT +HGLKD
Sbjct: 71  TAPNLQRLFEAPSVEKVFHFARFDVAALAAGLDIAVQPLFCTKVGSRLGRTYTPRHGLKD 130

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL+G+ + K  QSSDW   D+L+D QL YAA+DV +L   R +    L+R GR +LA
Sbjct: 131 LVMELVGVELDKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNKLETMLRREGRWELA 190

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   +   AELD + +     F H
Sbjct: 191 QRCFACIPVMAELDRMRFNQ--TFEH 214


>gi|254474856|ref|ZP_05088242.1| ribonuclease D [Ruegeria sp. R11]
 gi|214029099|gb|EEB69934.1| ribonuclease D [Ruegeria sp. R11]
          Length = 385

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M TI   + ++   C  A     + VDTE L       +LC+VQL+      +  V +  
Sbjct: 1   MKTITTTD-ELETFCQEAAQHPYVTVDTEFLRERTYFSKLCLVQLAYPGKDNENAVLVDP 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           +A G    P L  +  +E   K+FH  R D+ + +    V   P+F T++A+ +   +  
Sbjct: 60  LADGLSLEP-LYALFRNESVVKVFHAARQDLEIFWVDAQVFPTPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  +++++   + K  + +DWS   LSD Q  YA +DV HL  +      +L+R  
Sbjct: 118 QVGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAAELKRTE 177

Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           RS         L D A  ++     W  V   ++S
Sbjct: 178 RSHWVAEELQVLTDPATYEINPRDAWRRVKTRTNS 212


>gi|254419933|ref|ZP_05033657.1| ribonuclease D [Brevundimonas sp. BAL3]
 gi|196186110|gb|EDX81086.1| ribonuclease D [Brevundimonas sp. BAL3]
          Length = 383

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 8/206 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           MT I  +E  +   CA       I VDTE +       RLC++Q +  D    I  +A G
Sbjct: 1   MTPITTNEA-LADFCARLATAPFITVDTEFMRETTYWPRLCLIQAASADHAGIIDPMAEG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P L  +L D K  K+FH  R D+ +     G   RP+F T++A+ +   +  Q   
Sbjct: 60  LDLEPFL-DLLRDPKIIKVFHACRQDVEIFVR-LGAMPRPMFDTQVAA-MAAGFGEQVAY 116

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++++L + + K  + +DW+   LSD QL YA  DV HL AL  +  ++L++ GR D 
Sbjct: 117 DSLVRQMLRVELDKGSRFTDWARRPLSDSQLVYALGDVTHLAALYPKLRDRLKKEGRLDW 176

Query: 180 ATSCCNFLMDRAELDL---LGWENVD 202
             S    L+D A  D      W+ + 
Sbjct: 177 VMSEMESLIDPALYDTNPENAWKRLK 202


>gi|86138715|ref|ZP_01057288.1| ribonuclease D [Roseobacter sp. MED193]
 gi|85824775|gb|EAQ44977.1| ribonuclease D [Roseobacter sp. MED193]
          Length = 385

 Score =  245 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M T+   +  + A C  A     + VDTE L       +LC++Q++    G+    ++  
Sbjct: 1   MKTLTTTDA-LQAFCEEAANHPYVTVDTEFLRERTYYSKLCLIQIAFSGDGENDAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            +   +   L  +  DE   K+FH  R D+ + +    V  +P+F T++A+ +   + +Q
Sbjct: 60  LSEGLSLEPLYALFRDESVVKVFHAARQDLEIFWVDANVFPKPLFDTQVAAMVC-GFGDQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +++++   + K+ + +DWS   LS+ Q  YA +DV HL  +       L+R GR
Sbjct: 119 VGYETLVRKIVKEGVDKSSRFTDWSRRPLSEAQQAYALADVTHLRRVYEYLAADLERSGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           S         L D A  ++     W  V   + S
Sbjct: 179 SHWVAEELQVLTDPATYNIQPQDAWRRVKTRTSS 212


>gi|84501108|ref|ZP_00999343.1| ribonuclease D [Oceanicola batsensis HTCC2597]
 gi|84391175|gb|EAQ03593.1| ribonuclease D [Oceanicola batsensis HTCC2597]
          Length = 385

 Score =  245 bits (626), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M TI   E D+ A C  A   D + VDTE L       +LC++Q++     D    +I  
Sbjct: 1   MRTITTTE-DLAAFCNEAASCDYVTVDTEFLRERTYYSQLCLIQMAMPGEDDENAVLIDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            +G  +   L  +  ++   K+FH  R D+ + +   GV  +P+F T+IA+ +   +  Q
Sbjct: 60  LSGNLDLAPLYELFRNQAVVKVFHAARQDLEIFYVDAGVIPQPLFDTQIAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +K +    + K+ + +DWS   L++ Q +YA +DV HL  +     +KL+R  R
Sbjct: 119 VGYETLVKRIAKQQLDKSSRFTDWSRRPLTEAQKKYALADVTHLRKIYEYLADKLRRQKR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
                     L       +     W+ V   + S
Sbjct: 179 EAWVEEELGILTSPETYIVRPEEAWQRVRTRTSS 212


>gi|83951561|ref|ZP_00960293.1| ribonuclease D [Roseovarius nubinhibens ISM]
 gi|83836567|gb|EAP75864.1| ribonuclease D [Roseovarius nubinhibens ISM]
          Length = 385

 Score =  244 bits (625), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M TI   +  +   C  AR    + VDTE L       +LC+VQL+       G V +  
Sbjct: 1   MITITTTDA-LADYCQEARKHPYVTVDTEFLRERTYYSKLCLVQLAMPGEDDAGAVLVDP 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           +A G    P L  +  DE   K+FH  R D+ + +   G+  +P+F T++A+ +   +  
Sbjct: 60  LAEGLSLEP-LYELFRDENVVKVFHAARQDLEIFYVDAGLIPQPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  ++ +    + K+ + +DWS   LS+ Q +YA  DV HL  +      +L++ G
Sbjct: 118 QVGYETLVRRIAKEQLDKSSRFTDWSRRPLSEAQKKYALGDVTHLRRIYEYLAAELEKSG 177

Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           R          LMD A         W+ +   ++S
Sbjct: 178 RDAWVKEELGTLMDPATYITRPEDAWQRIKTRNNS 212


>gi|126737525|ref|ZP_01753255.1| ribonuclease D [Roseobacter sp. SK209-2-6]
 gi|126720918|gb|EBA17622.1| ribonuclease D [Roseobacter sp. SK209-2-6]
          Length = 388

 Score =  244 bits (624), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 7/213 (3%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRIA 57
           M  I   +        A     + VDTE L       +LC++QL+    G+    ++   
Sbjct: 1   MKIITTTDELQSFCEEAAQYAYVTVDTEFLRERTYYSKLCLIQLAFAGDGEEDAVLVDPL 60

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
           A       L  +  +E   K+FH  R D+ + +   GV  +P+F T++A+ +   +  Q 
Sbjct: 61  AEGLALDPLYDLFRNEAVVKVFHAARQDLEIFWVDAGVFPKPLFDTQVAAMVC-GFGEQV 119

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           G +  ++++   ++ K+ + +DWS   LS  Q  YA +DV HL  +     ++L++ GRS
Sbjct: 120 GYETLVRKIAKQSLDKSSRFTDWSRRPLSGAQKTYALADVTHLRRIYEFLAKELEKSGRS 179

Query: 178 DLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
                    L D A  D+     W  V   + S
Sbjct: 180 HWVAEELKVLTDPATYDIRPEEAWRRVKTRTSS 212


>gi|15964944|ref|NP_385297.1| ribonuclease D protein [Sinorhizobium meliloti 1021]
 gi|307301014|ref|ZP_07580783.1| ribonuclease D [Sinorhizobium meliloti BL225C]
 gi|15074123|emb|CAC45770.1| Probable ribonuclease D [Sinorhizobium meliloti 1021]
 gi|306903969|gb|EFN34555.1| ribonuclease D [Sinorhizobium meliloti BL225C]
          Length = 383

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C        I +DTE L        LC++Q++  +  V +  +A G   AP 
Sbjct: 4   TTADLEAACRELARSSYITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ +    K+FH  R DI ++ +   +   P+F T++A+ +   + +       +  
Sbjct: 63  FFALMSNPDVVKVFHAARQDIEIIHHLGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVNR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +    I K+ + +DWS   L+D+QL YA +DV HL  +    T++L R GRS        
Sbjct: 122 IKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEEMA 181

Query: 186 FLMDRAELDL---LGWENVD 202
            L  R   DL     W+ + 
Sbjct: 182 ILESRETYDLHPDNAWQRLK 201


>gi|227821514|ref|YP_002825484.1| ribonuclease D [Sinorhizobium fredii NGR234]
 gi|227340513|gb|ACP24731.1| ribonuclease D [Sinorhizobium fredii NGR234]
          Length = 383

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              ++ A C        I +DTE L        LC++Q++  D  V +  +A G   AP 
Sbjct: 4   TTAELEAACQELALSSYITIDTEFLRETTFWPELCLIQMAGPDTAVIVDPMAPGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ +    K+FH  R DI ++ +   +   P+F T++A+ +   + +       +  
Sbjct: 63  FFALMANADVVKVFHAARQDIEIIHHLGNLIPHPLFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  + I K+ + +DWS   L+D+QL YA +DV HL  +      +L+R GRS        
Sbjct: 122 IKNVQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDVYHYLKAELEREGRSSWLAEEMA 181

Query: 186 FLMDRAELDL---LGWENVD 202
            L  R   DL     W+ + 
Sbjct: 182 ILESRETYDLHPENAWQRLK 201


>gi|222148187|ref|YP_002549144.1| ribonuclease D [Agrobacterium vitis S4]
 gi|221735175|gb|ACM36138.1| ribonuclease D [Agrobacterium vitis S4]
          Length = 384

 Score =  243 bits (622), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 6/197 (3%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+ A C      + I +DTE L        LC++Q++  D  V +  +A G   AP    
Sbjct: 7   DLEAACEKLAKSEFITIDTEFLRETTFWPELCLIQMASPDLEVIVDPLAEGLDLAP-FFK 65

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++ +    K+FH  R DI ++F+   +   P+F T++A+ +   + +       ++++  
Sbjct: 66  LMANGDVIKVFHAARQDIEIIFHLGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVQKIKN 124

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           I+I K+ + +DWS   LS++QL YA +DV HL  + L    +L+R GR+   +     L 
Sbjct: 125 IHIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLTLNAELEREGRASWLSEEMAILE 184

Query: 189 DRAELDLL---GWENVD 202
            R   DL     W+ + 
Sbjct: 185 SRDTYDLHPDDAWQRLK 201


>gi|159904246|ref|YP_001551590.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211]
 gi|159889422|gb|ABX09636.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211]
          Length = 214

 Score =  243 bits (622), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/208 (40%), Positives = 126/208 (60%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
            T  + + D+  +    +    ++A+DTE +GLM  RDRLC+VQ+      V  IRI   
Sbjct: 9   KTFHILDRDLDEKSFKEFSTKASLAIDTEAMGLMHGRDRLCLVQICDESDNVICIRIERN 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           QK+AP L  +L +   +KIFH+ RFD+A L     ++V P+FCTK+AS++ RTY+ +HGL
Sbjct: 69  QKSAPLLKNLLENPSIQKIFHFARFDVAALEVNLDIKVTPIFCTKVASKIGRTYSPRHGL 128

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K+ + EL+ + + K  QSSDW A +DLS +QL YAA+DV +L   + +    L+R GR +
Sbjct: 129 KEVVMELVNVELDKQAQSSDWGAVEDLSAKQLAYAANDVRYLIKAKEKLEHMLKREGRWE 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           L T C   +   +ELD+  + N  IF H
Sbjct: 189 LTTKCFQCIPVMSELDIYRFGN--IFEH 214


>gi|330813574|ref|YP_004357813.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486669|gb|AEA81074.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 205

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/205 (44%), Positives = 130/205 (63%), Gaps = 2/205 (0%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            I +++ D+P         ++A+D E+LGL    RD+LC++QL  GD  V I++      
Sbjct: 2   NITLYQNDLPENHKLTNAQSVAIDAESLGLNYKGRDKLCLLQLCSGDDEVYIVQFDRNNY 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            +PNL  +L D    KI H+ RF++ +L Y    ++  ++CTKIAS+L RTYT++HGL D
Sbjct: 62  KSPNLCKILNDNNILKIAHFARFEMGILKYYLNAKIENIYCTKIASKLGRTYTDKHGLYD 121

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             KELL I ++K+QQSSDW   DLS+EQ QYAA DV++LH L+ +    L+R  R  LA 
Sbjct: 122 ITKELLNITLNKSQQSSDWGLKDLSEEQKQYAALDVLYLHKLKEKLDLMLRREKRDQLAK 181

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
            C +FL  R+ELDL GW+  DIFSH
Sbjct: 182 YCFDFLSTRSELDLNGWDE-DIFSH 205


>gi|307317748|ref|ZP_07597186.1| ribonuclease D [Sinorhizobium meliloti AK83]
 gi|306896510|gb|EFN27258.1| ribonuclease D [Sinorhizobium meliloti AK83]
          Length = 383

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C        I +DTE L        LC++Q++  +  V +  +A G   AP 
Sbjct: 4   TTADLEAACRELARSSYITIDTEFLRETTFWPVLCLIQMASPEMAVIVDPMAPGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ +    K+FH  R DI ++ +   +   P+F T++A+ +   + +       +  
Sbjct: 63  FFALMSNPDVVKVFHAARQDIEIIHHLGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVNR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +    I K+ + +DWS   L+D+QL YA +DV HL  +    T++L R GRS        
Sbjct: 122 IKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYQYLTKELDREGRSSWLAEEMA 181

Query: 186 FLMDRAELDL---LGWENVD 202
            L  R   DL     W+ + 
Sbjct: 182 ILESRETYDLHPDNAWQRLK 201


>gi|86357133|ref|YP_469025.1| RNase D protein [Rhizobium etli CFN 42]
 gi|86281235|gb|ABC90298.1| RNase D protein [Rhizobium etli CFN 42]
          Length = 381

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP 
Sbjct: 4   TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTMEVLVDPLAKGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  
Sbjct: 63  FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  ++I K+ + +DWS   LS++QL+YA +DV HL  + L  + +L R GR+       +
Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSEKQLEYALADVTHLRDVYLSLSSQLDREGRTSWLREEMD 181

Query: 186 FLMDRAELDLL---GWENVD 202
            L  R   D+     W+ + 
Sbjct: 182 ILEARETYDMHPDDAWQRLK 201


>gi|126725300|ref|ZP_01741142.1| ribonuclease D [Rhodobacterales bacterium HTCC2150]
 gi|126704504|gb|EBA03595.1| ribonuclease D [Rhodobacterales bacterium HTCC2150]
          Length = 385

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M TI   E D+   C  A     + VDTE L       +LC+VQL+         V +  
Sbjct: 1   MRTITTTE-DLAEYCTQAAKFPYVTVDTEFLRERTYYAKLCLVQLAMPGDDDSNAVLVDP 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           +A G   AP L  +  DE   K+FH  R D+ + F   GV   P+F T++A+ +   + +
Sbjct: 60  LAKGLSLAP-LYDLFRDENVVKVFHAARQDLEIFFVEEGVIPSPLFDTQVAAMVC-GFGD 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  ++++    + K+ + +DWS   LSD Q  YA +DV HL  +     ++L++  
Sbjct: 118 QVGYETLVRKIAREAVDKSSRFTDWSRRPLSDAQKTYALADVTHLRVVYEYLAKELEKSK 177

Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
           R+   T     L + +   +     W+ V   ++S
Sbjct: 178 RTKWVTEELGVLTEPSTYIVEPANAWKRVKTRTNS 212


>gi|116251369|ref|YP_767207.1| ribonuclease D [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256017|emb|CAK07098.1| putative ribonuclease D [Rhizobium leguminosarum bv. viciae 3841]
          Length = 381

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP 
Sbjct: 4   TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  
Sbjct: 63  FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  ++I K+ + +DWS   LSD+QL YA +DV HL  + L    +L R GRS   +   +
Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLSLKAELDREGRSSWLSEEMD 181

Query: 186 FLMDRAELDLL---GWENVD 202
            L  R   D+     W+ + 
Sbjct: 182 ILESRETYDMHPDDAWQRLK 201


>gi|296117272|ref|ZP_06835863.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
 gi|295976165|gb|EFG82952.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
          Length = 421

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 2/176 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    I +DTE +        LC+VQL+  D  V +  +A G   AP L  +L DE   
Sbjct: 49  LRREPFITIDTEFVRERTYWPELCLVQLASADEVVVVDALAPGMDLAP-LGELLADEGVI 107

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH  R D+ +  + F    +P+F T++A+ +   Y +Q G    +  ++G  I K+ +
Sbjct: 108 KVFHAARQDLEIFLHLFDRLPQPLFDTQVAAMVA-GYGDQVGYDSLVASVVGAQIDKSHR 166

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            SDW+A  LS  Q++YAA+DV +L  +  +   +L R GR D  T+  + L   A 
Sbjct: 167 FSDWAARPLSAAQIEYAAADVTYLREVYQRLVAQLDREGRKDWMTAEMDVLNSPAT 222


>gi|240850739|ref|YP_002972139.1| ribonuclease D [Bartonella grahamii as4aup]
 gi|240267862|gb|ACS51450.1| ribonuclease D [Bartonella grahamii as4aup]
          Length = 384

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 6/206 (2%)

Query: 1   MTTIRVHEGDIP-AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  +     D+  A  A R  D + VDTE +       +LC++QL+  D TV I  IA  
Sbjct: 1   MMNLITQTTDLEIALNALRTSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAPD 60

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    +++D+K  K+FH  R DI  +++  GV   P+F T+IA  +   + +    
Sbjct: 61  IDLQP-FFDLMIDKKVVKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSIC-GFGDSISY 118

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++   G ++ K+ + +DWS   LS++QL YA +DV +L  + L   ++L++  R+  
Sbjct: 119 DQIVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRAHW 178

Query: 180 ATSCCNFLMDRAELDL---LGWENVD 202
                  L++    D+     W+ V 
Sbjct: 179 MDDELTILLNPKTYDMPEDEAWKKVK 204


>gi|124026737|ref|YP_001015852.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A]
 gi|123961805|gb|ABM76588.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A]
          Length = 214

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/208 (41%), Positives = 125/208 (60%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           +T  + + DI +E   A R   A+AVDTE +GL+  RDRLC++Q+      V  IRI   
Sbjct: 9   STFNIFDQDIDSETEIALRSSSALAVDTEAMGLIHGRDRLCLIQICDEFDNVICIRIERN 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q +AP+L  +L ++  EK+FH+ RFD+A L     + V P+FCTKIAS++ RTY+ +HGL
Sbjct: 69  QHSAPHLKSILENKTIEKVFHFARFDVAALASNLNINVNPIFCTKIASKIGRTYSPRHGL 128

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K+ + E +G+ + K  QSSDW    DL+ +QL YAA+DV +L   + +  E L+R  R  
Sbjct: 129 KEVVLETVGVELDKQAQSSDWGKVGDLTQKQLIYAANDVRYLLGAKHKLEEMLKREERWG 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   +ELD   + N  IF H
Sbjct: 189 LAQKCFQCVPVLSELDRRRFTN--IFDH 214


>gi|241203984|ref|YP_002975080.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857874|gb|ACS55541.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 381

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP 
Sbjct: 4   TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPRTEVLVDPLAKGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  
Sbjct: 63  FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  ++I K+ + +DWS   LSD+QL YA +DV HL  + L    +L R GRS   +   +
Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLSLKAELDREGRSSWLSEEMD 181

Query: 186 FLMDRAELDLL---GWENVD 202
            L  R   D+     W+ + 
Sbjct: 182 ILESRETYDMHPDDAWQRLK 201


>gi|148238801|ref|YP_001224188.1| ribonuclease D [Synechococcus sp. WH 7803]
 gi|147847340|emb|CAK22891.1| Ribonuclease D [Synechococcus sp. WH 7803]
          Length = 214

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 127/206 (61%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V +GD+ AE + R+    A+AVDTE +GL+  RDRLC+VQ+      V  IRIA GQ 
Sbjct: 11  FVVLDGDLNAEWSERFAASTALAVDTEAMGLIHGRDRLCLVQICDDKDQVACIRIALGQS 70

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            AP L  ++     EK+FH+ RFD+A L    G+RV P+FCTK+ SRL RTYT +HGLKD
Sbjct: 71  EAPRLKALMEAATIEKVFHFARFDVAALATGLGIRVNPIFCTKVGSRLARTYTPRHGLKD 130

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL+G+ + K  QSSDW   D+L+D QL YAA+D  +L   R Q    L+R GR +LA
Sbjct: 131 LVMELVGVELDKQAQSSDWGRVDELTDVQLAYAANDARYLLPARRQLEVMLRREGRWELA 190

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            SC   +   ++LD   +  V+ F H
Sbjct: 191 QSCFQCIPVMSDLDRFRF--VNTFEH 214


>gi|49475730|ref|YP_033771.1| ribonuclease D [Bartonella henselae str. Houston-1]
 gi|49238537|emb|CAF27773.1| Ribonuclease D [Bartonella henselae str. Houston-1]
          Length = 406

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 3/196 (1%)

Query: 1   MTTIRVHEGDIP-AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  +     D+  A    R  D + +DTE +       +LC++QL+  D TV I  I+  
Sbjct: 23  MMKLITQTTDLEIALATLRNSDFVTIDTEFIRETTFWPQLCLIQLASPDTTVLIDPISQD 82

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++V++K  K+FH  R DI  +++  GV   P+F T+IA  +   + +    
Sbjct: 83  IDLKP-FFDLMVNKKIVKVFHAARQDIETIYHLGGVIPSPLFDTQIAGSIC-GFGDSISY 140

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++   G  + K+ + +DWS   LS++QL YA +DV +L  + L   ++L++  R+  
Sbjct: 141 DQIVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRTHW 200

Query: 180 ATSCCNFLMDRAELDL 195
                  L++    D+
Sbjct: 201 MDDEIAVLLEPKTYDM 216


>gi|116072599|ref|ZP_01469865.1| 3'-5' exonuclease [Synechococcus sp. BL107]
 gi|116064486|gb|EAU70246.1| 3'-5' exonuclease [Synechococcus sp. BL107]
          Length = 214

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 124/206 (60%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V +GD+ A    RY+   ++AVDTE +GL+  RDRLC+VQ++     V  +RI  GQ 
Sbjct: 11  FAVFDGDLDASWTERYLQMPSLAVDTEAMGLIHGRDRLCLVQIADAQDRVACVRIGLGQS 70

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL  +      EK+FH+ RFD+A L     + V+P+FCTK+ SRL RTYT +HGLKD
Sbjct: 71  TAPNLQRLFEAASVEKVFHFARFDVAALAAGLDIAVQPLFCTKVGSRLGRTYTPRHGLKD 130

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL+G+ + K  QSSDW   D+L+D QL YAA+DV +L   R Q    L+R GR +LA
Sbjct: 131 LVMELVGVELDKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNQLETMLRREGRWELA 190

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   +   AELD + +     F H
Sbjct: 191 QRCFTCIPVIAELDRMRFNQ--TFEH 214


>gi|88807852|ref|ZP_01123363.1| putative ribonuclease D [Synechococcus sp. WH 7805]
 gi|88787891|gb|EAR19047.1| putative ribonuclease D [Synechococcus sp. WH 7805]
          Length = 214

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 127/206 (61%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V +GD+  E + RY    A+AVDTE +GL+  RDRLC+VQ+      V  IRIA GQ 
Sbjct: 11  FVVLDGDLNEEWSERYARSTALAVDTEAMGLIHGRDRLCLVQICDDKDQVACIRIALGQT 70

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            AP L  ++     EK+FH+ RFD+A L    G+RV P+FCTK+ SRL RTYT +HGLKD
Sbjct: 71  EAPRLKALMEATTIEKVFHFARFDVAALATGLGIRVNPLFCTKVGSRLARTYTPRHGLKD 130

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL+G+ + K  QSSDW   D+L+D QL YAA+D  +L A R Q    L+R GR +LA
Sbjct: 131 LVMELVGVELDKQAQSSDWGRVDELTDVQLAYAANDARYLLAARRQLEVMLRREGRWELA 190

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
            SC   +   ++LD   +  V+ F H
Sbjct: 191 QSCFQCIPVMSDLDRFRF--VNTFEH 214


>gi|327194287|gb|EGE61150.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 381

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP 
Sbjct: 4   TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  
Sbjct: 63  FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  ++I K+ + +DWS   LSD+QL+YA +DV HL  + L    +L R GR+   T   N
Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLTEEMN 181

Query: 186 FLMDRAELDLL---GWENVD 202
            L  R   D+     W+ + 
Sbjct: 182 ILEARETYDMHPDDAWQRLK 201


>gi|150396023|ref|YP_001326490.1| ribonuclease D [Sinorhizobium medicae WSM419]
 gi|150027538|gb|ABR59655.1| ribonuclease D [Sinorhizobium medicae WSM419]
          Length = 383

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C        I +DTE L        LC++Q++  D  V +  +A G   A  
Sbjct: 4   TTADLEAACRELASSSYITIDTEFLRETTFWPELCLIQMASPDMAVIVDPMAPGIDLAS- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ +    K+FH  R DI ++ +   +   P+F T++A+ +   + +       +  
Sbjct: 63  FFALMGNADVVKVFHAARQDIEIIHHLGNLIPHPLFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +    I K+ + +DWS   L+D+QL YA +DV HL  +     ++L+R GRS        
Sbjct: 122 IKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYHYLVQELEREGRSSWLAEEMA 181

Query: 186 FLMDRAELDL---LGWENVD 202
            L +R   DL     W+ + 
Sbjct: 182 ILENRETYDLHPDNAWQRLK 201


>gi|254431401|ref|ZP_05045104.1| RNAse D protein [Cyanobium sp. PCC 7001]
 gi|197625854|gb|EDY38413.1| RNAse D protein [Cyanobium sp. PCC 7001]
          Length = 224

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/207 (44%), Positives = 125/207 (60%), Gaps = 5/207 (2%)

Query: 4   IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V +GD+ A  A  Y  A  +AVDTE +GL+  RDRLC+VQ+      V  IR+  GQ 
Sbjct: 15  FAVFDGDLDAGWAELYAGARALAVDTEAMGLIHGRDRLCLVQICDDADNVCCIRLRRGQS 74

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +AP+L  ++ +   EK+FH+ RFD+A L    G+ V P+FCTKI SRL RTY+ +HGLKD
Sbjct: 75  SAPHLQALMENAAIEKVFHFARFDVAALAENLGIAVHPIFCTKIGSRLARTYSPRHGLKD 134

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++EL+G+ + K  QSSDW   DDLS+ QL YAA DV +L   R +    L+R  R +LA
Sbjct: 135 VVQELVGVELDKRAQSSDWGEVDDLSEAQLAYAAGDVRYLLQARDRLERMLRREERWELA 194

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
             C   L   A+LD   +  +  F HS
Sbjct: 195 QRCFTCLPVFADLDRQRFHLL--FEHS 219


>gi|190891177|ref|YP_001977719.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|190696456|gb|ACE90541.1| ribonuclease III protein [Rhizobium etli CIAT 652]
          Length = 381

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP 
Sbjct: 4   TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  
Sbjct: 63  FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  ++I K+ + +DWS   LSD+QL+YA +DV HL  + L    +L R GR+   T   N
Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLTEEMN 181

Query: 186 FLMDRAELDLL---GWENVD 202
            L  R   D+     W+ + 
Sbjct: 182 ILEARETYDMHPDDAWQRLK 201


>gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3]
 gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3]
          Length = 386

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 3/187 (1%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   C      + I +DTE L        LC+VQ++     V +  +A G    P L  +
Sbjct: 8   LAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGLDLTP-LFEL 66

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           + +    K+FH  R DI ++++  G+   P+F T++A+ +   + +       ++ +  +
Sbjct: 67  MANPDVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVQRIKNV 125

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            I K+ + +DWS   L+++QL YA +DV HL  + L    +L+R GRS   T   + L  
Sbjct: 126 QIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLEREGRSLWLTEEMDILES 185

Query: 190 RAELDLL 196
           R   D+ 
Sbjct: 186 RETYDMH 192


>gi|163759179|ref|ZP_02166265.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
 gi|162283583|gb|EDQ33868.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
          Length = 383

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 7/206 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   E  + A CA     + + VDTE L        LC++Q++  D    +  +A G
Sbjct: 1   MDMITTTEA-LAAFCARLAAHEFVTVDTEFLRETTYWPELCLIQMAGPDDEGIVDPLAEG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ D    K+FH  R DI ++ +   +   P+F T++A+ +   +      
Sbjct: 60  IDLKP-FFELMADTSVVKVFHAARQDIEIMVHRGDLVPHPIFDTQVAAMVC-GFGESISY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              +  + G +I K+ + +DWS   LSD+QL YA +DV HL  + L+   +L+  GRS  
Sbjct: 118 DQLVSRITGAHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLELLSRLKAEGRSHW 177

Query: 180 ATSCCNFLMDRAELDLL---GWENVD 202
                  L  RA  ++     W  + 
Sbjct: 178 VADEMAVLESRATYEIEPSDAWRRLK 203


>gi|148243178|ref|YP_001228335.1| ribonuclease [Synechococcus sp. RCC307]
 gi|147851488|emb|CAK28982.1| Ribonuclease [Synechococcus sp. RCC307]
          Length = 217

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           T   V +GD+  E    Y    A+AVDTE +GL+  RDRLC+VQ+      V  IRIA G
Sbjct: 10  THFAVFDGDLSPEWFGHYKNAKALAVDTEAMGLIHGRDRLCLVQICDDQDRVCCIRIARG 69

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q  AP L  ++     EK+FHY RFD+A +    G+ V P+FCTK+ASRL RTY+ +HGL
Sbjct: 70  QSEAPLLKELMEATGIEKVFHYARFDVAAMASGLGIAVNPIFCTKVASRLARTYSPRHGL 129

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
              + EL+G+++ K  QSSDW   ++LS++QL YAA+DV +L   R +  + L R  R  
Sbjct: 130 AAVVSELVGVDLDKQAQSSDWGRVEELSEQQLAYAANDVRYLLPARDRLEQMLVREERWS 189

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   ++LD   ++   IF H
Sbjct: 190 LAQRCFLCIPVFSDLD--RFQYGSIFEH 215


>gi|126731278|ref|ZP_01747085.1| ribonuclease D [Sagittula stellata E-37]
 gi|126708189|gb|EBA07248.1| ribonuclease D [Sagittula stellata E-37]
          Length = 385

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M T+   E ++   CA A+    I VDTE L       +LC++QL+    GD    ++  
Sbjct: 1   MQTLTTTE-ELSDFCARAKGQPYITVDTEFLRERTYYSKLCLIQLALPGKGDEDAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                +   L+ +  DE   K+FH  R D+ + F   GV  +P+F T++A+ +   +  Q
Sbjct: 60  MVDGLSLDPLLELFRDESIVKVFHAARQDLEIFFIDHGVIPQPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +K +    + K+ + +DWS   L+D Q  YA +DV HL  +      KL+  GR
Sbjct: 119 VGYETLVKRIAKQQLDKSSRFTDWSRRPLTDAQKSYALADVTHLREIYEFLAAKLEESGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           S         L D           W+ V   S++
Sbjct: 179 SRWVAEELGVLTDPETYITRPREAWKRVKTRSNA 212


>gi|126735792|ref|ZP_01751537.1| ribonuclease D [Roseobacter sp. CCS2]
 gi|126714979|gb|EBA11845.1| ribonuclease D [Roseobacter sp. CCS2]
          Length = 385

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M TI   E D+ A C  A     + VDTE L       +LC+VQL+     G   V +  
Sbjct: 1   MKTITTTE-DLAAFCQEAAKRAYVTVDTEFLRERTYYSKLCLVQLAYQDDSGADAVLLDP 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           +  G    P L  +  D    K+FH  R D+ + +   GV   P+F T++A+ +   +  
Sbjct: 60  LVDGLSLEP-LYDLFKDHGVVKVFHAARQDLEIFYVDAGVIPEPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  ++++   ++ K+ + +DWS   L+D Q +YA +DV HL  +    + +L + G
Sbjct: 118 QVGYETLVRKITKSDLDKSSRFTDWSRRPLTDAQAKYALADVTHLRDIYEHLSARLAKSG 177

Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
           RS         L D A         W+ V   + S
Sbjct: 178 RSKWVAEEMAVLEDPATYQADPDNAWKRVKTRTQS 212


>gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
 gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score =  241 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 3/187 (1%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   C      + I +DTE L        LC+VQ++     V +  +A G    P    +
Sbjct: 8   LAEACTELAKSEFITIDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDLTPMF-EL 66

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           + +    K+FH  R DI ++++  G+   P+F T++A+ +   + +       ++++  +
Sbjct: 67  MANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVQKIKNV 125

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            I K+ + +DWS   L+++QL YA +DV HL  + L    +L+R GRS   T   N L  
Sbjct: 126 QIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLWLTEEMNILES 185

Query: 190 RAELDLL 196
           R   D+ 
Sbjct: 186 RDTYDMH 192


>gi|86749614|ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
 gi|86572642|gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
          Length = 382

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 5/207 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A         I VDTE L        LC+VQ++  D  V +  +A G 
Sbjct: 1   MDLISTTEQLASACTRLASHPVITVDTEFLRETTYYPLLCVVQMASRDEAVVVDTLAPGI 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P    ++ +E   K+FH  R DI ++++  G+   P+F T++A+ +   Y +     
Sbjct: 61  DLKP-FFDLMANENVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++ + G    K  + +DWS   L+DEQL YA SDV HL  +       L++ GRSD  
Sbjct: 119 QLVERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLRDVFAALDADLKQRGRSDWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVDIF 204
           +     L      D      WE +   
Sbjct: 179 SEEMEVLTSPKTYDFHPESAWERLKTR 205


>gi|329850483|ref|ZP_08265328.1| ribonuclease D [Asticcacaulis biprosthecum C19]
 gi|328840798|gb|EGF90369.1| ribonuclease D [Asticcacaulis biprosthecum C19]
          Length = 417

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 8/205 (3%)

Query: 1   MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           MT I  +  D+ A C A +    I VDTE +       +LC++Q +  D    I  +A  
Sbjct: 1   MTPI-TNTNDLIAFCEAIKSAPFITVDTEFMRETTYWPKLCLIQAASEDHAAIIDPLAKS 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P L  +L DEK  K+FH  R D+ +     G    P+F T++A+ +   Y +Q   
Sbjct: 60  LDLKPFL-DILADEKILKVFHACRQDMEIFVN-LGTMPMPIFDTQVAA-MAAGYGDQVAY 116

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              +++ L I+I K  + +DWS   LSD+QLQYA  DV HL  L  +  ++L R GR + 
Sbjct: 117 DSLVRQKLKIDIDKGSRFTDWSRRPLSDQQLQYALGDVTHLAKLYPKLRDRLAREGRLEW 176

Query: 180 ATSCCNFLMDRAELDLL---GWENV 201
            ++    L             W  +
Sbjct: 177 VSAEMVDLCAPELYSTNPEDAWRRL 201


>gi|72382995|ref|YP_292350.1| putative ribonuclease D [Prochlorococcus marinus str. NATL2A]
 gi|72002845|gb|AAZ58647.1| 3'-5' exonuclease [Prochlorococcus marinus str. NATL2A]
          Length = 214

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 85/208 (40%), Positives = 125/208 (60%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           +T  + + DI +E   A R   A+AVDTE +GL+  RDRLC++Q+      V  IRI   
Sbjct: 9   STFNIFDQDIDSETEIALRSSSALAVDTEAMGLIHGRDRLCLIQICDEFDNVICIRIERN 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q +AP+L  +L ++  EK+FH+ RFD+A L     + V P+FCTKIAS++ RTY+ +HGL
Sbjct: 69  QHSAPHLKSILENKTIEKVFHFARFDVAALASNLNINVNPIFCTKIASKIGRTYSPRHGL 128

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K+ + E +G+ + K  QSSDW    DL+ +QL YA++DV +L   + +  E L+R  R  
Sbjct: 129 KEVVLETVGVELDKQAQSSDWGKVGDLTQKQLIYASNDVRYLLGAKHKLEEMLKREERWG 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   +ELD   + N  IF H
Sbjct: 189 LAQKCFQCVPVLSELDRRRFTN--IFDH 214


>gi|254439069|ref|ZP_05052563.1| ribonuclease D [Octadecabacter antarcticus 307]
 gi|198254515|gb|EDY78829.1| ribonuclease D [Octadecabacter antarcticus 307]
          Length = 395

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M TI     ++   CA A     + VDTE L       +LC++QL+    GD    ++  
Sbjct: 11  MKTITTT-AELATYCAQAAKYPYVTVDTEFLRERTYYSKLCLIQLAYMGDGDDDAVLLDP 69

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            A   +   L  +  DE   K+FH  R D+ + F   G+  +P+F T++A+ +   +  Q
Sbjct: 70  LANGLDLAPLYDLFKDENVVKVFHAARQDLEIFFVDQGIIPKPLFDTQVAAMVC-GFGEQ 128

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++   N+ K+ + +DWS   LSD Q  YA +DV HL  +    + +L + GR
Sbjct: 129 AGYETLVRKIAKDNVDKSSRFTDWSRRPLSDAQKTYALADVTHLRVIYEYLSAELDKSGR 188

Query: 177 SDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
                     L D A         W+ V   + S
Sbjct: 189 KKWVAEEMAVLNDPATYQADPDNAWKRVKTRTSS 222


>gi|46202610|ref|ZP_00208583.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 398

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 7/211 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   E  + A C   +    + VDTE +       +LC+VQ++  D    I  +A G
Sbjct: 1   MPMISDTES-LAAFCRRLKSAPFVTVDTEFMREKTYWPQLCLVQVAGPDEARAIDPLAPG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P L  ++ D    K+FH  R D+ +  +       P+F T+IA+ +   + +  G 
Sbjct: 60  MDLTP-LFELMADTNVLKVFHAARQDVEIFLHLADAIPTPIFDTQIAAMVC-GFGDSVGY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           +    +L    I K+ + +DWS   LS++Q+QYA +DV HL     +   KL+R GR + 
Sbjct: 118 ETLASQLAKARIDKSMRFTDWSIRPLSEKQIQYALADVTHLRVAYEKLVRKLERNGRIEW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIFSHS 207
            +     L +     +     W  +   S S
Sbjct: 178 LSEEMALLTEPGTYRVDPENAWRRLKPRSTS 208


>gi|110679520|ref|YP_682527.1| ribonuclease D [Roseobacter denitrificans OCh 114]
 gi|109455636|gb|ABG31841.1| ribonuclease D [Roseobacter denitrificans OCh 114]
          Length = 387

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M TI   +  +   C  A   D + VDTE L       +LC++QL+     D T  I+  
Sbjct: 1   MKTITTTQA-LAEFCTQAAQFDYVTVDTEFLRERTYYSKLCLIQLAMPGEDDSTGCIVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            A   +   L  +  D    K+FH  R D+ + +    V   P+F T++A+ +   +  Q
Sbjct: 60  LAPGLSLEPLYALFRDTSVVKVFHAARQDLEIFYVDAEVFPEPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++ +    + K  + +DWS   L+D Q++YA +DV HL  +     EKL+  GR
Sbjct: 119 VGYETLVRRIAKKPLDKTSRFTDWSRRPLTDAQMKYALADVTHLREVYEFLAEKLEETGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           S         L       +     W  V   ++S
Sbjct: 179 SRWVREELTVLTSPETYIIAPMDAWRRVKTRTNS 212


>gi|255261512|ref|ZP_05340854.1| ribonuclease D [Thalassiobium sp. R2A62]
 gi|255103847|gb|EET46521.1| ribonuclease D [Thalassiobium sp. R2A62]
          Length = 385

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M TI   + ++ A C  A     + VDTE L       +LC++QL+    GD    ++  
Sbjct: 1   MITITTTQ-ELAAFCQEAAAHPYVTVDTEFLRERTYYSKLCLIQLAYPGEGDENAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                +  +L  +  D    K+FH  R D+ + F   G+   P+F T++A+ +   +  Q
Sbjct: 60  LEDGLSLASLYDLFRDPNVVKVFHAARQDLEIFFVDEGIIPAPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++    + K+ + +DWS   LSD Q +YA  DV +L  +     +KL +  R
Sbjct: 119 VGYETLVRKIAKAPLDKSSRFTDWSRRPLSDAQKKYALGDVTYLREIYEFLADKLAKNNR 178

Query: 177 SDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
           +         L       +     W  +   ++S
Sbjct: 179 AKWVAEEMAVLNAPKTYRVEPSEAWMRIKTRTNS 212


>gi|319405613|emb|CBI79236.1| Ribonuclease D [Bartonella sp. AR 15-3]
          Length = 383

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 3/193 (1%)

Query: 4   IRVHEGDIP-AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +  +  D+  A  A R  + + VDTE +       +LC++Q++  D T+ I  +A     
Sbjct: 3   LITNTIDLEIAIAALRKSNFVTVDTEFIRETTFWPQLCLIQVASSDVTILIDPMAQDINL 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            P    +++D+K  K+FH  R DI ++++  GV   P+F T++A  +   + +       
Sbjct: 63  QP-FFDLMIDKKIVKVFHAARQDIEIIYHLGGVIPSPLFDTQVAGSIC-GFGDSISYDQI 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++   G ++ K+ + +DWS   LS++QL YA +DV +L  + L   ++L+   R+     
Sbjct: 121 VQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLREVYLVLKKQLEEKKRTHWMND 180

Query: 183 CCNFLMDRAELDL 195
               L+     D+
Sbjct: 181 EMAILLTPTTYDI 193


>gi|254461790|ref|ZP_05075206.1| ribonuclease D [Rhodobacterales bacterium HTCC2083]
 gi|206678379|gb|EDZ42866.1| ribonuclease D [Rhodobacteraceae bacterium HTCC2083]
          Length = 385

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 9/213 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M TI   E  +   C  A+    + VDTE L       +LC+VQL+     D    ++  
Sbjct: 1   MLTITTTEA-LAEFCEEAKKHAYVTVDTEFLRERTYYSKLCLVQLAMPGTDDSNGCLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                +   L  +  D    K+FH  R DI +     GV   P+F T++AS +   +  Q
Sbjct: 60  LVEGISLEPLYDLFRDTSVVKVFHAARQDIEIFQVDAGVIPTPLFDTQVASMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++    I K+ + +DWS   LSD Q +YA +DV HL  +     +KL+  GR
Sbjct: 119 VGYETLVRKIAKQEIDKSSRFTDWSRRPLSDAQAKYALADVTHLRQVYEFLAKKLKDQGR 178

Query: 177 SDLATSCCNFLMDR---AELDLLGWENVDIFSH 206
           S         L +      L    W+ V I ++
Sbjct: 179 SHWVDEEMKILNNPDTYITLPENAWKRVKIRNN 211


>gi|163868507|ref|YP_001609716.1| hypothetical protein Btr_1359 [Bartonella tribocorum CIP 105476]
 gi|161018163|emb|CAK01721.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
          Length = 384

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 3/196 (1%)

Query: 1   MTTIRVHEGDIP-AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  +     D+  A  A R  D + VDTE +       +LC++QL+  D TV I  IA  
Sbjct: 1   MMNLITQTTDLEIALNALRNSDFVTVDTEFIRETTFWPQLCLIQLASPDVTVLIDPIAPD 60

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    +++D+K  K+FH  R DI  ++Y  GV   P+F T+IA  +   + +    
Sbjct: 61  IDLQP-FFDLMIDKKIVKVFHSARQDIETIYYLGGVIPSPLFDTQIAGSIC-GFGDSISY 118

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++   G ++ K+ + +DWS   LS++QL YA +DV +L  + L   ++L++  R+  
Sbjct: 119 DQIVQHCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRTHW 178

Query: 180 ATSCCNFLMDRAELDL 195
                  L++    D+
Sbjct: 179 MDDEVTILLNPKTYDM 194


>gi|294084191|ref|YP_003550949.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663764|gb|ADE38865.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 409

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 4   IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +     D+       R    +A+DTE +       +LC++Q+  G   V I  +A     
Sbjct: 30  LITTNADLLRVVDEFRGKPFLAIDTEFMRERTYYPQLCLIQVGDGTKAVAIDPLAKNLNL 89

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            P L  ++ DE   K+FH G  D+ +     G    PV+ T+IA  L   + +Q G    
Sbjct: 90  EP-LWSLMRDESIIKVFHAGNQDMEIFLNEMGGLPSPVYDTQIAG-LVCGHGDQIGYDSL 147

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +K +LG N+ K  + +DWS   L+D Q+ YA  DV++L  +     +K+    R++    
Sbjct: 148 VKSILGKNVDKTSRFTDWSKRPLTDRQISYALDDVIYLAQIYPIMLDKIASENRTNWLDE 207

Query: 183 CCNFLMDRAEL---DLLGWENVDIFS 205
                 D A         W+ + I  
Sbjct: 208 EFKKFSDPATYVTKPENAWKRIKIRH 233


>gi|49474343|ref|YP_032385.1| ribonuclease D [Bartonella quintana str. Toulouse]
 gi|49239847|emb|CAF26240.1| Ribonuclease D [Bartonella quintana str. Toulouse]
          Length = 404

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 3/196 (1%)

Query: 1   MTTIRVHEGDIP-AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  +     D+  A  A R  D + VDTE +       +LC++QL+  D T+ I  +A  
Sbjct: 21  MMRLITQTTDLEIALAALRPSDFVTVDTEFIRETTFWPQLCLIQLASPDVTMLIDPMAQD 80

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++VDEK  K+FH  R DI ++++  GV   P+F T+IA  +   + +    
Sbjct: 81  MDLKP-FFDLMVDEKIVKVFHAARQDIEIIYHLGGVIPYPLFDTQIAGSIC-GFGDSISY 138

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++   G  + K+ + +DWS   LS++QL YA +DV +L  + L   ++L++  R   
Sbjct: 139 DQIVQRCTGHQLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRMHW 198

Query: 180 ATSCCNFLMDRAELDL 195
                  L      D+
Sbjct: 199 MDDEITTLSTPKTYDI 214


>gi|92117640|ref|YP_577369.1| ribonuclease D [Nitrobacter hamburgensis X14]
 gi|91800534|gb|ABE62909.1| ribonuclease D [Nitrobacter hamburgensis X14]
          Length = 396

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I     ++ + CA       + VDTE L        LC+VQ++  D  V +  +A G
Sbjct: 15  MDLITTT-AELASVCARLANYPVVTVDTEFLRETTYYPLLCVVQMASPDEAVVVDALAEG 73

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ +E+  K+FH  R DI ++++  G+   P+F T++A+ +   Y +    
Sbjct: 74  IDLKP-FFDLMSNERVLKVFHAARQDIEIVWHQAGIIPHPIFDTQVAAMVL-GYGDSIAY 131

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ + G    K  + +DWS   L+ +QL+YA +DV HL  +       L++ GR D 
Sbjct: 132 DALVERVNGHRPDKTHRFTDWSRRPLTKDQLEYAVADVTHLRDVFAALDADLKKRGRGDW 191

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +     L      D      WE +   
Sbjct: 192 VSEEMEVLTSPKTYDFHPERAWERLKTR 219


>gi|85717198|ref|ZP_01048155.1| ribonuclease D [Nitrobacter sp. Nb-311A]
 gi|85695978|gb|EAQ33879.1| ribonuclease D [Nitrobacter sp. Nb-311A]
          Length = 420

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I     ++ + CA       I VDTE L        LC++Q++  D  + I  +A G
Sbjct: 39  MDLITTT-AELASVCARFAKHPVITVDTEFLRETTYYPLLCVIQMASPDEAIAIDALAEG 97

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
                    ++ +E   K+FH  R DI ++++  G+   PVF T++A+ +   Y +    
Sbjct: 98  IDLNS-FFTLMSNEGVLKVFHAARQDIEIIWHQAGIIPHPVFDTQVAAMVL-GYGDSIAY 155

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ + G    K  + +DWS   L+ EQL+YA +DV HL  +       L++ GRSD 
Sbjct: 156 DALVERVTGHRPDKTHRFTDWSRRPLTAEQLEYAVADVTHLRDVFAALDVDLRKRGRSDW 215

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +     L      D      WE +   
Sbjct: 216 VSEEMEILTSPKTYDFHPERAWERLKTR 243


>gi|146340329|ref|YP_001205377.1| ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278]
 gi|146193135|emb|CAL77147.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278]
          Length = 389

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I     D+ A CA       I VDTE L        LC+VQ++  D  V I  +A G
Sbjct: 8   MDLITTT-ADLAAACARLAQHPVITVDTEFLRETTYYPLLCVVQMASQDEAVVIDALAEG 66

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +      ++ +EK  K+FH  R DI ++++  G+   P+F T++A+ +   Y +    
Sbjct: 67  I-DLKAFFELMANEKVLKVFHAARQDIEIIWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 124

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ + G    K  + +DWS   L+ EQ  YA +DV HL  +       L++ GRSD 
Sbjct: 125 DQLVERITGHRPDKTHRFTDWSRRPLTKEQAHYAEADVTHLRDVFAALDTDLKKRGRSDW 184

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +     L      D      WE +   
Sbjct: 185 VSEEMEILTSPKTYDFHPERAWERLKTR 212


>gi|115525280|ref|YP_782191.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
 gi|115519227|gb|ABJ07211.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
          Length = 392

 Score =  239 bits (610), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   E  + A CA       I VDTE L        LC+VQ++  D  V I  +A G
Sbjct: 1   MDLITTSE-QLAAACARFAKQPVITVDTEFLRETTYYPLLCVVQIASADEAVVIDSLAPG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ DE   K+FH  R DI ++++  G+   P+F T++A+ +   Y +    
Sbjct: 60  IDLKP-FFELMADEHVLKVFHAARQDIEIVWHRAGILPHPIFDTQVAAMVL-GYGDSIAY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ + G    K  + +DWS   L++EQ+ YA SDV HL  +       L++ GRSD 
Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLTEEQVHYAVSDVTHLRDVFAALDADLKKRGRSDW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +     L      D      WE +   
Sbjct: 178 VSEEMEILTSPKTYDFHPERAWERLKTR 205


>gi|218461991|ref|ZP_03502082.1| RNase D protein [Rhizobium etli Kim 5]
          Length = 293

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP 
Sbjct: 4   TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  
Sbjct: 63  FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
              ++I K+ + +DWS   LSD+QL+YA +DV HL  + L  + +L R GR+       +
Sbjct: 122 SKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLSSQLDREGRTSWLREEMD 181

Query: 186 FLMDRAELDLL---GWENVD 202
            L  R   D+     W+ + 
Sbjct: 182 VLEARETYDMHPDDAWQRLK 201


>gi|123967004|ref|YP_001012085.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515]
 gi|123201370|gb|ABM72978.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515]
          Length = 213

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 124/206 (60%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           I ++  DI       Y D   +AVDTE +GL+  RDRLC++Q+S        I+I     
Sbjct: 10  ITLYNNDITQNLYNIYKDSSYLAVDTEAMGLIHGRDRLCLIQISNEFHLTSCIKIELNNS 69

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           ++P++  +  D K  KIFHY RFD+A L     +    +FCTKIAS+L RTYT++HGLK+
Sbjct: 70  DSPHIKKLFEDNKIMKIFHYARFDVAALKCNLNINTNNIFCTKIASKLARTYTHKHGLKE 129

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL+GI + K+ QSSDW + +DLSD+Q+ YAA+DV +L     +    L+R GR DLA
Sbjct: 130 LIHELIGIELDKSSQSSDWGSCEDLSDKQIDYAANDVKYLIEAMRKLRIILEREGRYDLA 189

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   +   +ELD+L + N  IF H
Sbjct: 190 QKCFQTIPVHSELDILKFSN--IFEH 213


>gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens]
          Length = 388

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 3/187 (1%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   C      + I  DTE L        LC+VQ++     V +  +A G    P    +
Sbjct: 8   LAEACTELAKSEFITTDTEFLRETTFWPELCLVQMASPTLEVLVDPLAKGIDLTPMF-EL 66

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           + +    K+FH  R DI ++++  G+   P+F T++A+ +   + +       ++++  +
Sbjct: 67  MANPNVVKVFHAARQDIEIIYHLGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVQKIKNV 125

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            I K+ + +DWS   L+++QL YA +DV HL  + L    +L+R GRS   T   N L  
Sbjct: 126 QIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLWLTEEMNILES 185

Query: 190 RAELDLL 196
           R   D+ 
Sbjct: 186 RDTYDMH 192


>gi|167646508|ref|YP_001684171.1| ribonuclease D [Caulobacter sp. K31]
 gi|167348938|gb|ABZ71673.1| ribonuclease D [Caulobacter sp. K31]
          Length = 389

 Score =  238 bits (608), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 6/188 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE +       +LC++Q++  D    I  +A G    P L+ +L D    
Sbjct: 17  LKGQPFIAVDTEFMRETTYWPKLCLIQVASPDIEACIDPLAEGMDLEP-LLEILRDPGVL 75

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH  R D+ +          P+F T++A  +   +  Q      ++++L I + K+ +
Sbjct: 76  KVFHAARQDVEIF-NNLNAMPTPLFDTQVAG-MAAGFGEQIAYDALVRQMLKIELDKSSR 133

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL- 195
            +DW+   LSD QL YA +DV HL  L     E+L++ GR          L D A  D+ 
Sbjct: 134 FTDWARRPLSDAQLTYAVADVTHLATLFPILRERLEKAGRLAWVEEEMKALNDPAAYDVD 193

Query: 196 --LGWENV 201
               W  +
Sbjct: 194 PEKAWRRL 201


>gi|91977418|ref|YP_570077.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
 gi|91683874|gb|ABE40176.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
          Length = 392

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   E  +   C        I VDTE L        LC+VQ++  D  V +  +A G
Sbjct: 1   MDLISTTE-QLADVCTRLASHPVITVDTEFLRETTYYPLLCVVQMASPDEAVVVDTLAPG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ +E   K+FH  R DI ++++  G+   P+F T++A+ +   Y +    
Sbjct: 60  IDLKP-FFDLMANENVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ + G    K  + +DWS   L+DEQL YA SDV HL  +       L++  RSD 
Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLRDVFAALDADLKKRDRSDW 177

Query: 180 ATSCCNFLMDRAELDLL---GWENVDIF 204
            +     L      D      WE +   
Sbjct: 178 VSEEMEILTSPKTYDFHPESAWERLKTR 205


>gi|297184397|gb|ADI20513.1| ribonuclease d [uncultured alpha proteobacterium EB080_L58F04]
          Length = 387

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG----DGTVDIIRI 56
           M TI   +  I    AA+  D + +DTE L       +LC++QL+      D  V +  +
Sbjct: 1   MKTITKTDELIAFCEAAKAFDYVTIDTEFLRERTYYSKLCLIQLAVPGKGDDHAVLVDPL 60

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
           A G K    L  +  DE   K+FH  R D+ +     GV  +P+F T++A+ +   +  Q
Sbjct: 61  AHGLK-LDALYALFEDETVVKVFHAARQDLEIFCVDAGVLPKPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++   +I K+ + +DWS   L++ Q  YA +DV HL  +      K+++ GR
Sbjct: 119 VGYETLVRKITKNSIDKSSRFTDWSRRPLTEAQKSYALADVTHLRQVYEFLRAKIEKTGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
                     L +     +     W  V   + S
Sbjct: 179 GPWVEEELQILTNPETYRVRPSEAWRRVKTRTSS 212


>gi|329890110|ref|ZP_08268453.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
 gi|328845411|gb|EGF94975.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
          Length = 384

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT I  ++  I           I VDTE +       +LC++Q +       II   A  
Sbjct: 1   MTPITTNDALIAFCERLAKAPYITVDTEFMRETTYWPKLCLIQAAASPTDAAIIDPMAEG 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +    + +L DE   K+FH  R D+ +     G   RP+F T++A+ +   + +Q   +
Sbjct: 61  LDLEPFLDILRDESILKVFHAARQDVEIF-NKLGAMPRPLFDTQVAA-MAAGFGDQVSYE 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++L   + K  + +DW+   LSD QL YA  DV HL AL  +  ++LQ+ GR D  
Sbjct: 119 ALVRQMLRQELDKGSRFTDWARRPLSDAQLTYALGDVTHLSALYPKLRDRLQKEGRLDWV 178

Query: 181 TSCCNFLMDRAELDL---LGWENVD 202
            S    + D A  D      W+ + 
Sbjct: 179 MSEMGAVTDPALYDTSPENAWKRLK 203


>gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1]
 gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1]
          Length = 392

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 8/211 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           MT I     ++ A CA  +    +AVDTE +       +LC++Q +       I  +A  
Sbjct: 1   MTPITTT-AELEAFCAKLKGQPFVAVDTEFMRETTYWPKLCLIQAAAPSAEAVIDPLADD 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +    + +L DE  +K+FH  R D+ +     G   +P+F T++A  +   +  Q   
Sbjct: 60  I-DLSCFLDILRDESIQKVFHAARQDVEIF-NNLGAMPKPLFDTQVAG-MAAGFGEQIAY 116

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++++L I I K+ + +DW+   LSD QL YA +DV HL  L     ++L+R GR   
Sbjct: 117 DALVRQMLKIEIDKSSRFTDWARRPLSDSQLTYALADVTHLAKLYPLLRQRLEREGRLAW 176

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIFSHS 207
            T   N L D A  D+     W+ +    H+
Sbjct: 177 VTDEMNDLTDPANYDVEPENAWKRLRPRRHT 207


>gi|319404161|emb|CBI77754.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 383

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 5/191 (2%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            A R  + + VDTE +       +LC++Q++  D T+ I  +A      P    +++D+K
Sbjct: 15  AALRKSNFVTVDTEFIRKTTFWPQLCLIQVASPDITILIDPMAQDINLQP-FFDLMIDKK 73

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+FH  R DI ++++  G+   P+F T++A  +   + +       ++   G ++ K+
Sbjct: 74  VVKVFHAARQDIEIIYHLGGIIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLDKS 132

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
            + +DWS   LS++QL YA SDV +L  + L   ++L+   R+         L+     D
Sbjct: 133 SRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRTHWMHDEMALLLTPTTYD 192

Query: 195 L---LGWENVD 202
           +     W+ V 
Sbjct: 193 IPENEAWKKVK 203


>gi|149202482|ref|ZP_01879454.1| ribonuclease D [Roseovarius sp. TM1035]
 gi|149143764|gb|EDM31798.1| ribonuclease D [Roseovarius sp. TM1035]
          Length = 386

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 10/215 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M TI   + D+ A CA AR    + +DTE L       +LC++Q++      D  V +  
Sbjct: 1   MKTITTTD-DLAAFCAMARKHPYVTLDTEFLRERTYYSKLCLLQMAVPGADDDTAVLVDP 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           I   + +   L  +  D    K+FH  R D+ +     GV   P+F T++A+ +   +  
Sbjct: 60  IDGAEMSMEPLYELFRDTSVVKVFHAARQDLEIFHVDAGVIPDPLFDTQVAAMVC-GFGE 118

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  +K +    + K+ + +DWS   L++ Q  YA +DV HL  +     +KL   G
Sbjct: 119 QVGYETLVKRIAKQTVDKSSRFTDWSRRPLTEAQKVYALADVTHLRVIYEYLAKKLASSG 178

Query: 176 RSDLATSCCNFLMDRAEL---DLLGWENVDIFSHS 207
           R        + L D A         W+ V   + S
Sbjct: 179 RDKWVAEELSVLTDPATYRTDPADAWQRVKTRNTS 213


>gi|163735131|ref|ZP_02142567.1| ribonuclease D [Roseobacter litoralis Och 149]
 gi|161391589|gb|EDQ15922.1| ribonuclease D [Roseobacter litoralis Och 149]
          Length = 387

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M TI   +  +   C  A   D + VDTE L       +LC++QL+     D T  I+  
Sbjct: 1   MKTITTTQA-LEEFCTQAAQFDYVTVDTEFLRERTYYSKLCLIQLAMPGEDDSTGCIVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                +   L  +  D    K+FH  R D+ + +    V   P+F T++A+ +   +  Q
Sbjct: 60  LVPGLSLEPLYALFRDTSVVKVFHAARQDLEIFYVDAEVFPEPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++ +    + K  + +DWS   L+D Q++YA +DV HL  +     EKL+  GR
Sbjct: 119 VGYETLVRRIAKQPLDKTSRFTDWSRRPLTDAQMKYALADVTHLRDVYEFLAEKLEETGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           S         L       +     W  V   ++S
Sbjct: 179 SRWVREELTVLTSPETYIIPPMDAWRRVKTRTNS 212


>gi|296536446|ref|ZP_06898543.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
 gi|296263225|gb|EFH09753.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
          Length = 394

 Score =  237 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 91/203 (44%), Gaps = 7/203 (3%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   E  +   CA  R    + VDTE +        LC+VQL+  +    I   A G   
Sbjct: 15  ITTTEA-LAELCARLRTEPFVTVDTEFMRERTYWPELCVVQLAGAEDVAVIDAQAEGLDL 73

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           AP L  +L D K  K+FH  R D+ +    FG   RP+F T+IA+ +   + +Q      
Sbjct: 74  AP-LGELLADPKVTKVFHAARQDVEICILRFGAPPRPLFDTQIAAMVA-GFGDQASYDSL 131

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ L G  I KA + SDW+A  LS  Q+ YAA+DV HL  +     E+L + GR      
Sbjct: 132 VRALAGAQIDKAHRFSDWAARPLSPAQINYAAADVTHLRRVYTALVERLTQEGRLSWVAE 191

Query: 183 CCNFLMDRAEL---DLLGWENVD 202
               L D A         WE + 
Sbjct: 192 EMAELTDPATYRQDPETAWERLK 214


>gi|83942499|ref|ZP_00954960.1| ribonuclease D [Sulfitobacter sp. EE-36]
 gi|83846592|gb|EAP84468.1| ribonuclease D [Sulfitobacter sp. EE-36]
          Length = 385

 Score =  237 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M TI     ++ A C  A   D + VDTE L       +LC++QL+     D    ++  
Sbjct: 1   MKTITTT-AELEAYCTEAAKHDYVTVDTEFLRERTYYSKLCLIQLAMPGTDDSNAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            +   +   L  +  D    K+FH  R D+ + +   GV   P+F T++A+ +   +  Q
Sbjct: 60  LSEGLSLDPLYTLFRDTSVVKVFHAARQDLEIFYVDAGVFPEPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++    + K  + +DWS   LSD Q +YA +DV HL  +      KL++ GR
Sbjct: 119 VGYETLVRKIAHQPLDKTSRFTDWSRRPLSDAQAKYALADVTHLRQIYEFLARKLEQTGR 178

Query: 177 SDLATSCCNFLMDRAEL---DLLGWENVDIFSHS 207
           +         L             W  V   ++S
Sbjct: 179 ARWVQEELEILTSPDTYVTPPREAWRRVKTRTNS 212


>gi|78780061|ref|YP_398173.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9312]
 gi|78713560|gb|ABB50737.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9312]
          Length = 211

 Score =  237 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 89/208 (42%), Positives = 124/208 (59%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
             I     D+ A+     +    +A+DTE +GL+  RDRLC+VQ+         I+I   
Sbjct: 6   KNIDFLYSDLTADLYNIYKKSSYLAIDTEAMGLIHGRDRLCLVQICNELRRTACIKIELN 65

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           + +APNL  +L DEK  KIFHY RFD+A L    G+  + +FCTKIAS+L RTYTN+HGL
Sbjct: 66  RSSAPNLKALLEDEKITKIFHYARFDVAALKCNLGINTKNIFCTKIASKLARTYTNKHGL 125

Query: 120 KDNLKELLGINISKAQQSSDW-SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           KD + ELLG+ + K+ QSSDW S +DL+ +QL YA++DV +L     +    L R  R +
Sbjct: 126 KDLINELLGVELDKSSQSSDWGSKEDLTKDQLDYASNDVRYLIEAMHKLKVILDRENRYE 185

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   A+LD+L + N  IF H
Sbjct: 186 LAQKCFKTVSVHADLDILKFSN--IFEH 211


>gi|85702967|ref|ZP_01034071.1| ribonuclease D [Roseovarius sp. 217]
 gi|85671895|gb|EAQ26752.1| ribonuclease D [Roseovarius sp. 217]
          Length = 386

 Score =  237 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 7/198 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPG----DGTVDIIR 55
           M TI   E D+   CA AR    + VDTE L       +LC++QL+      D  V +  
Sbjct: 1   MKTITTTE-DLAEFCAMARTHSYVTVDTEFLRERTYYSKLCLLQLAVPGKGDDSAVLVDP 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           I     +   L  +  D    K+FH  R D+ + +   GV   P+F T++A+ +   +  
Sbjct: 60  IEGEDMSMEPLYELFRDTSVVKVFHAARQDLEIFYVDAGVIPDPMFDTQVAAMVC-GFGE 118

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  +K +    + K+ + +DWS   L+D Q  YA +DV HL  +     +KL   G
Sbjct: 119 QVGYETLVKRIAKQTVDKSSRFTDWSRRPLTDAQKTYALADVTHLRVVYEFLAKKLASSG 178

Query: 176 RSDLATSCCNFLMDRAEL 193
           R        + L D A  
Sbjct: 179 RDKWVAEELSVLTDPATY 196


>gi|148255258|ref|YP_001239843.1| ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1]
 gi|146407431|gb|ABQ35937.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1]
          Length = 384

 Score =  237 bits (607), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I     D+ A CA       I VDTE L        LC+VQ++  D  + I  +A G
Sbjct: 1   MDLITTT-ADLSAACARLAQHPVITVDTEFLRETTYYPLLCVVQMASPDEALVIDALAEG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +  +   ++ +EK  K+FH  R DI ++++   +   P+F T++A+ +   Y +    
Sbjct: 60  I-DLTSFFELMANEKVLKVFHAARQDIEIIWHRANIVPHPIFDTQVAAMVL-GYGDSIAY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ + G    K  + +DWS   LS EQ+ YA +DV HL  +       L++ GRSD 
Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLSKEQVHYAEADVTHLRDVFAALDADLKKRGRSDW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +     L      D      WE +   
Sbjct: 178 VSEEMEILTSPRTYDFHPERAWERLKTR 205


>gi|260426693|ref|ZP_05780672.1| ribonuclease D [Citreicella sp. SE45]
 gi|260421185|gb|EEX14436.1| ribonuclease D [Citreicella sp. SE45]
          Length = 385

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 7/213 (3%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRIA 57
           M TI   E       AA     + VDTE L       +LC++QL+    GD    ++   
Sbjct: 1   MKTITTTEDLAAFCQAAAKAPYVTVDTEFLRERTYYSKLCLIQLAFPGKGDENAVLVDPL 60

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
               +   L+ +  +    K+FH  R D+ + F   GV   P+F T++A+ +   +  Q 
Sbjct: 61  VDGLDLEPLLELFRNTAVVKVFHAARQDLEIFFIDHGVIPDPLFDTQVAAMVC-GFGEQV 119

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           G +  +K +    + K+ + +DWS   L++ Q +YA +DV HL  +      +L+R GR+
Sbjct: 120 GYETLVKRIAKQALDKSSRFTDWSRRPLTEAQKKYALADVTHLRVIYEYLAAELERTGRA 179

Query: 178 DLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
                    L D           W+ V   S S
Sbjct: 180 RWVAEELAVLTDPETYITRPEDAWQRVKTRSSS 212


>gi|254473302|ref|ZP_05086699.1| ribonuclease D [Pseudovibrio sp. JE062]
 gi|211957418|gb|EEA92621.1| ribonuclease D [Pseudovibrio sp. JE062]
          Length = 405

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 5/207 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A       D + VDTE L       +LC++Q++  D  V +  +A   
Sbjct: 1   MKMITTTEELAQACAKLANSDFVTVDTEFLRETTFWPKLCVIQIANPDHAVLVDALAEDL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P    ++ +    K+FH  R DI ++++  G    P+F +++A+ +   + +     
Sbjct: 61  DLEP-FFALMRNTDIVKVFHAARQDIEIIYHLGGFVPSPLFDSQVAAMVC-GFGDSVSYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + ++ G  I K+ + +DWS   L+++QL YA +DV HL  + L   ++L++ GRS   
Sbjct: 119 QLVSKVTGERIDKSSRFTDWSRRPLTNKQLAYALADVTHLREVYLFLKKQLEQKGRSHWV 178

Query: 181 TSCCNFLMDRAEL---DLLGWENVDIF 204
                 L             W+ + + 
Sbjct: 179 EDEMATLSSIDTYRSDPAKAWQRMKLR 205


>gi|148284142|ref|YP_001248232.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
 gi|146739581|emb|CAM79331.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
          Length = 210

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 94/210 (44%), Positives = 127/210 (60%), Gaps = 9/210 (4%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-------DGTVDIIRI 56
           I +   DIP          +A+DTET+GL   RDRLC++Q           D  V +++ 
Sbjct: 3   IHIFINDIPDNLM--ISGDLAIDTETMGLNFARDRLCLLQFCQESKDDNIDDKEVFLVKF 60

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              Q N+ NL  +L+D  R KIFH+ RFD+A + Y  GV +  +FCT +AS+L RTYT+ 
Sbjct: 61  EDQQYNSHNLKKLLMDCSRTKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDS 120

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           HGLKD  +ELLGI ISK  QSSDW    L+ +Q +YAA DVV+LH ++    E L R  R
Sbjct: 121 HGLKDLCRELLGIQISKQCQSSDWGRQSLTSDQEEYAAKDVVYLHRIKNILEEMLIREHR 180

Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206
            D+A     FL  RAELD++GW+++DI SH
Sbjct: 181 LDIAQKIFKFLPARAELDVIGWQDIDILSH 210


>gi|114767452|ref|ZP_01446239.1| ribonuclease D [Pelagibaca bermudensis HTCC2601]
 gi|114540462|gb|EAU43543.1| ribonuclease D [Roseovarius sp. HTCC2601]
          Length = 385

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRI 56
           M TI   E D+ A C+ A     + VDTE L       +LC++QL+    GD    ++  
Sbjct: 1   MKTITSTE-DLAAFCSEAATAPYVTVDTEFLRERTYYSKLCLIQLAYPGQGDENAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            AG+ +   L+ +  +    K+FH  R D+ + F   GV   P+F T++A+ +   +  Q
Sbjct: 60  LAGELSLEPLLELFRNTNVVKVFHAARQDLEIFFIDHGVIPDPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +K +    + K+ + +DWS   L+D Q +YA +DV HL  +      +L+R GR
Sbjct: 119 VGYETLVKRIAKQGLDKSSRFTDWSRRPLTDAQKKYALADVTHLRVIYEYLAAELERTGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           +         L D           W+ V   S S
Sbjct: 179 ARWVAEELGVLTDPETYITRPQDAWQRVKTRSSS 212


>gi|83953718|ref|ZP_00962439.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
 gi|83841663|gb|EAP80832.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
          Length = 385

 Score =  237 bits (606), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M TI     ++ A C  A   D + VDTE L       +LC++QL+     D    ++  
Sbjct: 1   MKTITTT-AELEAYCTEAAKHDYVTVDTEFLRERTYYSKLCLIQLAMPGTDDSNAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            +   +   L  +  D    K+FH  R D+ + +   GV   P+F T++A+ +   +  Q
Sbjct: 60  LSEGLSLDPLYTLFRDTSVVKVFHAARQDLEIFYVDAGVFPEPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++    + K  + +DWS   LSD Q +YA +DV HL  +      KL++ GR
Sbjct: 119 VGYETLVRKIAHQPLDKTSRFTDWSRRPLSDAQAKYALADVTHLRQIYEFLARKLEQTGR 178

Query: 177 SDLATSCCNFLMDRAEL---DLLGWENVDIFSHS 207
           +         L             W  V   ++S
Sbjct: 179 ARWVQEELEILTSPDTYVTPPREAWRRVKTRTNS 212


>gi|33862140|ref|NP_893701.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634358|emb|CAE20043.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 213

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 84/208 (40%), Positives = 120/208 (57%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
             I     DI  +     +    +AVDTE +GL+  RDRLC++Q+         I+I   
Sbjct: 8   KKINFSHNDINTDLYNLYKDSSYLAVDTEAMGLIHGRDRLCLIQICNELNLTACIKIELN 67

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             ++PN+  +  D+   KIFHY RFD+A L     +  R +FCTKIAS+L RTYTN+HGL
Sbjct: 68  NSDSPNIKKLFEDKNIMKIFHYARFDVAALRCNLEINTRNIFCTKIASKLARTYTNKHGL 127

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           KD + ELL + + K+ QSSDW + +DLS++Q+ YAA+DV +L     +    L R GR +
Sbjct: 128 KDLINELLEVELDKSSQSSDWGSLEDLSNKQIDYAANDVRYLIETMHKLKLILDREGRYE 187

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   +ELD+L + N  IF H
Sbjct: 188 LAQKCFKTIPVHSELDILKFSN--IFEH 213


>gi|22298627|ref|NP_681874.1| putative ribonuclease D [Thermosynechococcus elongatus BP-1]
 gi|22294807|dbj|BAC08636.1| tlr1083 [Thermosynechococcus elongatus BP-1]
          Length = 211

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 95/203 (46%), Positives = 130/203 (64%), Gaps = 5/203 (2%)

Query: 7   HEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            + D+     A +   D +AVDTET+GL   RDRLC+VQ+   +G V +++I  GQK AP
Sbjct: 10  FDYDLSPTALAHFLNADQLAVDTETMGLNIPRDRLCLVQVCDPEGQVAVVKIGRGQKEAP 69

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           +L  +L   +  KIFHY RFD+A L Y  G+RV PVFCTKIAS++ RTY+ +HGLKD + 
Sbjct: 70  HLQQLLEHPRITKIFHYARFDLATLRYHLGIRVHPVFCTKIASKIARTYSPRHGLKDLVL 129

Query: 125 ELLGINISKAQQSSDWS-ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +LLG+ I K+ QSSDW  A  L ++QL+YAA+DV +L  LR Q T  L+R  R +L  + 
Sbjct: 130 DLLGVEIDKSAQSSDWGNATALREDQLRYAANDVRYLIPLRQQLTAMLKREERFELVQTA 189

Query: 184 CNFLMDRAELDLLGWENVDIFSH 206
            + L    +LDL G+  V  F H
Sbjct: 190 LSCLPAIVDLDLAGYTQV--FEH 210


>gi|254486025|ref|ZP_05099230.1| ribonuclease D [Roseobacter sp. GAI101]
 gi|214042894|gb|EEB83532.1| ribonuclease D [Roseobacter sp. GAI101]
          Length = 385

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M TI     ++ A C  A   D + +DTE L       +LC++Q++     D    ++  
Sbjct: 1   MKTITTT-AELEAYCLEAATHDYVTIDTEFLRERTYYSKLCLIQMAMPGTDDSGAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            AG  +   L  +  D    K+FH  R D+ + F   GV   P+F T++A+ +   +  Q
Sbjct: 60  LAGDMSLEPLYALFRDTSVVKVFHAARQDLEIFFVDAGVFPEPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++    + K  + +DWS   L+D Q +YA +DV HL  +      KL+  GR
Sbjct: 119 VGYETLVRKIAHQAVDKTSRFTDWSRRPLTDAQAKYALADVTHLRQVYEFLARKLEETGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           +         L             W+ V   ++S
Sbjct: 179 ARWVAEELEILTSPDTYITQPRDAWKRVKTRTNS 212


>gi|319407179|emb|CBI80818.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 383

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 5/191 (2%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            A R  + + VDTE +       +LC++Q++  D T+ I  +       P    +++D+K
Sbjct: 15  AALRKSNFVTVDTEFIRETTFWPQLCLIQVASQDITILIDPMVQDINLQP-FFDLMIDKK 73

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+FH  R DI ++++  G+   P+F T++A  +   + +       ++   G ++ K+
Sbjct: 74  VVKVFHAARQDIEIIYHLGGIIPSPLFDTQVAGSIC-GFGDSISYDQIVQRCTGHHLDKS 132

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
            + +DWS   LS++QL YA SDV +L  + L   ++L+   R+         L+     D
Sbjct: 133 SRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQLEEKKRTHWMHDEMTLLLTPTTYD 192

Query: 195 L---LGWENVD 202
           +     W+ V 
Sbjct: 193 IPENEAWKKVK 203


>gi|83311936|ref|YP_422200.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
 gi|82946777|dbj|BAE51641.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
          Length = 397

 Score =  237 bits (605), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 7/211 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   E  + A C   +    + VDTE +       +LC+VQ++  D    I  +A  
Sbjct: 1   MPMISDTES-LAAFCRRLKSAPFVTVDTEFMREKTYWPQLCLVQVAGPDEARAIDPLAPD 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
              AP L  ++ D    K+FH  R D+ +  +       P+F T+IA+ +   + +  G 
Sbjct: 60  MDLAP-LFELMADTNVLKVFHAARQDVEIFLHLADAIPTPIFDTQIAAMVC-GFGDSVGY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           +    +L    I K+ + +DWS   LS++Q+QYA +DV HL     +   K+++ GR + 
Sbjct: 118 ETLASQLAKARIDKSMRFTDWSIRPLSEKQIQYALADVTHLRVAYEKLVRKVEKNGRIEW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIFSHS 207
            +     L +     +     W  +   S S
Sbjct: 178 LSEEMALLTEPGTYRVDPENAWRRLKPRSTS 208


>gi|75675781|ref|YP_318202.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
 gi|74420651|gb|ABA04850.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
          Length = 382

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 6/204 (2%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            +     ++ + CA       I VDTE L        LC++QL+  D  V +  +A G  
Sbjct: 2   DLITTSAELASVCARLARHPVITVDTEFLRETTYYPLLCVIQLASPDEAVVVDALAGGID 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
             P    ++ +E   K+FH  R DI ++++  G+   PVF T++A+ +   + +      
Sbjct: 62  LKP-FFALMSNESVLKVFHAARQDIEIIWHQAGLIPHPVFDTQVAAMVL-GHGDSIAYDA 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ + G    K  + +DWS   L+ EQL+YA +DV HL  +       L + GRSD  +
Sbjct: 120 LVERITGHRPDKTHRFTDWSRRPLTAEQLEYAVADVTHLRDVFAALDADLSKRGRSDWVS 179

Query: 182 SCCNFLMDRAELDL---LGWENVD 202
                L      D      WE + 
Sbjct: 180 EEMEVLTSPKTYDFHPERAWERLK 203


>gi|218670444|ref|ZP_03520115.1| ribonuclease III protein [Rhizobium etli GR56]
          Length = 212

 Score =  237 bits (605), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 3/191 (1%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP 
Sbjct: 4   TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  
Sbjct: 63  FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  ++I K+ + +DWS   LSD+QL+YA +DV HL  + L    +L R GR+   +   +
Sbjct: 122 IKSVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEMD 181

Query: 186 FLMDRAELDLL 196
            L  R   D+ 
Sbjct: 182 ILEARETYDMH 192


>gi|209964842|ref|YP_002297757.1| ribonuclease D, putative [Rhodospirillum centenum SW]
 gi|209958308|gb|ACI98944.1| ribonuclease D, putative [Rhodospirillum centenum SW]
          Length = 385

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 6/206 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +     D+ A     +  + + VDTE +       +LC+VQ++  D    I  +A G   
Sbjct: 3   LITTTADLAAFVTRLKGAEYVTVDTEFMREKTYWPQLCLVQVAGPDEAAAIDPLAEGMDL 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            P L  +L D    K+FH  R D+ +  +  G    P+F T+IA+ +   + +  G +  
Sbjct: 63  TP-LFELLHDPGVLKVFHAARQDVEIFVHLTGAVPAPLFDTQIAAMVC-GFGDSVGYETL 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + +L    I K+ + +DWS   L++ QL YA SDV HL     +   +L + GR      
Sbjct: 121 ITKLTSARIDKSSRFTDWSQRPLTERQLSYALSDVTHLRPAYEKLRRRLAKTGREHWLDE 180

Query: 183 CCNFLMDRAELDL---LGWENVDIFS 205
               L D A   +     W  + + +
Sbjct: 181 ENVILADPATYRVDPEEAWRRLKVRT 206


>gi|110633474|ref|YP_673682.1| ribonuclease D [Mesorhizobium sp. BNC1]
 gi|110284458|gb|ABG62517.1| ribonuclease D [Chelativorans sp. BNC1]
          Length = 392

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A  A    D + VDTE +        LC++Q++    T  +  +A G   AP    ++ +
Sbjct: 13  AVAALENSDFVTVDTEFIRETTFWPELCLIQMAAPGVTALVDPLADGMDLAP-FFRLMGN 71

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           E+  K+FH  R DI +++   G+   P+F T++A+ +   + +       +  + G +I 
Sbjct: 72  EQVVKVFHAARQDIEIIYNRGGLIPHPIFDTQVAAMVC-GFGDSISYDQLVLRITGEHID 130

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           K  + +DW    LS++QL+YA +DV HL  +    T +LQR GR        + L  R  
Sbjct: 131 KTSRFTDWRHRPLSEKQLRYALADVTHLIPVYAHLTTELQRGGREGWLKEEMDVLTARET 190

Query: 193 LDLL---GWENVDIFS 205
            D      W+ + + +
Sbjct: 191 YDPHPDDAWKRLKMRA 206


>gi|300024345|ref|YP_003756956.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526166|gb|ADJ24635.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
          Length = 384

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M TI     ++ A C      D +AVDTE L        LC++QL+  +    +  +A G
Sbjct: 1   MQTITTT-PELAALCETLSRSDYVAVDTEFLREQTFWPLLCLIQLAGPEAEAIVDPLAPG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
              AP    ++ D    K+FH  R DI ++F   GV   PVF +++A+ +   + +    
Sbjct: 60  LDLAP-FYHLMADTSTVKVFHAARQDIEIVFLKSGVVPTPVFDSQVAAMVC-GFGDSISY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            + +K+  G ++ K+ + +DWS   LS +QL YA +DV +L  +  +  + L + GR+  
Sbjct: 118 VNLVKKTTGADLDKSSRFTDWSRRPLSPKQLDYALADVTYLRDVYQRLRQTLDKTGRTPW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
                  L   A  D      W+ + + 
Sbjct: 178 LQEEMGVLTSPATYDTSPENAWQRLRLR 205


>gi|254526817|ref|ZP_05138869.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202]
 gi|221538241|gb|EEE40694.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202]
          Length = 211

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/208 (41%), Positives = 123/208 (59%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
             I     D+ ++     +    +A+DTE +GL+  RDRLC+VQ+    G    I+I   
Sbjct: 6   KNIDFFYNDLTSDLYNLYKNSSFLAIDTEAMGLIHGRDRLCLVQICNEFGRTSCIKIELN 65

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             ++ +L  +L D+K  KIFHY RFD+A L     +  + +FCTKIAS+L RTYTN+HGL
Sbjct: 66  TSSSTHLKALLEDDKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGL 125

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           KD + ELLGI + K+ QSSDW + +DL+ EQL YAA+DV +L     +    L+R  R +
Sbjct: 126 KDLINELLGIELDKSSQSSDWGSNEDLTKEQLDYAANDVRYLIEAMHKLKVILKRENRYE 185

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   A+LD+L + N  IF H
Sbjct: 186 LAQKCFETVPVHADLDILKFSN--IFEH 211


>gi|90423836|ref|YP_532206.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
 gi|90105850|gb|ABD87887.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
          Length = 384

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   +  + A C       AI VDTE L        LC+VQ++  +  V +  +A G
Sbjct: 1   MDLITTTD-QLAAVCDRLAKHPAITVDTEFLRETTYYPLLCVVQMASAEDAVVVDTLAPG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ ++   K+FH  R DI ++++  G+   P+F T++A+ +   Y +    
Sbjct: 60  IDLKP-FFDLMANDDVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ + G    K  + +DW+   L+DEQL YA SDV HL  +       L++ GRSD 
Sbjct: 118 DQLVERITGHRPDKTHRFTDWARRPLTDEQLHYAVSDVTHLRDVFAALDADLKKRGRSDW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +     L      D      WE +   
Sbjct: 178 VSEEMEVLTSPKTYDFHPERAWERLKTR 205


>gi|84517066|ref|ZP_01004422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
 gi|84508961|gb|EAQ05422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
          Length = 385

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 10/212 (4%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRIAA 58
           I     D+ A C  A     + VDTE L       +LC+VQ+    + G+  V +  +A 
Sbjct: 3   IISTTADLAAFCTQAAKRAYVTVDTEFLRERTYYSKLCLVQMAYRDAAGEDAVLVDPLAE 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           G    P L  +  D    K+FH  R D+ +     GV   P+F T++A+ +   +  Q G
Sbjct: 63  GISLDP-LYDLFRDPGVVKVFHAARQDLEIFHVDAGVIPAPLFDTQVAAMVC-GFGEQAG 120

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            +  ++++    + K+ + +DWS   L+D Q +YA +DV HL  +      +L + GR+ 
Sbjct: 121 YETLVRKIAKAEVDKSSRFTDWSRRPLTDAQAEYALADVTHLRDVYEYLANRLAKSGRTK 180

Query: 179 LATSCCNFLMDRAELDLL---GWENVDIFSHS 207
                   L D A         W  V   + S
Sbjct: 181 WVAEEMAVLNDPATYQSNPDEAWMRVKTRTTS 212


>gi|295689658|ref|YP_003593351.1| ribonuclease D [Caulobacter segnis ATCC 21756]
 gi|295431561|gb|ADG10733.1| ribonuclease D [Caulobacter segnis ATCC 21756]
          Length = 389

 Score =  236 bits (603), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 8/205 (3%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I     ++ A C        +AVDTE +       +LC++Q++       I  +A  
Sbjct: 1   MKPITTT-AELAAFCNELAGEPFVAVDTEFMRETTYWPKLCLIQVASPTHEAVIDPLADD 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P L+ ++ DE+  K+FH  R D+ +         +P+F T++A  +   +  Q   
Sbjct: 60  IDLEP-LLAVMRDERILKVFHAARQDVEIF-NNLKAMPKPLFDTQVAG-MAAGFGEQIAY 116

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++++L I + K+ + +DW+   L++ QL YA +DV HL AL     E+L+  GR   
Sbjct: 117 DALVRQMLRIELDKSSRFTDWARRPLTEAQLTYALADVTHLAALFPILRERLETSGRLAW 176

Query: 180 ATSCCNFLMDRAELDL---LGWENV 201
                  + D A  D+     W  +
Sbjct: 177 VEEEMTAISDPAAYDVDPEKAWRRL 201


>gi|83858515|ref|ZP_00952037.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633]
 gi|83853338|gb|EAP91190.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633]
          Length = 384

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 6/208 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A    R  + +AVDTE +       +LC++Q +  D  V I  +A G 
Sbjct: 1   MEWIADTESLAQACAKLRQAEYVAVDTEFMRESTFWPQLCLIQAAGDDTEVLIDPLAEGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGL 119
              P    +L D+   K+FH  R D+ + F+  G +  +P+F ++IA+ +     +    
Sbjct: 61  DLQP-FYDLLTDQNVIKVFHACRQDLEIFFHEGGGIIPKPLFDSQIAA-MAVGLGDSISY 118

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            + ++ L+ +N+ K  + +DWS   LSD+Q +YA +DV HL  L     EKL ++GR   
Sbjct: 119 DNLVRALVKVNLDKGSRFTDWSRRPLSDKQKEYALADVTHLRDLFPILREKLAKVGREAW 178

Query: 180 ATSCCNFLMDRAELDLL---GWENVDIF 204
                  L D A  ++     W+ + + 
Sbjct: 179 LAEEMKTLTDPATYEMHPEDAWKRLKLR 206


>gi|157414190|ref|YP_001485056.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215]
 gi|157388765|gb|ABV51470.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215]
          Length = 211

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/208 (41%), Positives = 123/208 (59%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
             I     D+ ++     +    +A+DTE +GL+  RDRLC+VQ+    G    I+I   
Sbjct: 6   KNIDFFYNDLTSDLYNLYKNSSFLAIDTEAMGLIHGRDRLCLVQICNEFGRTSCIKIELN 65

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             ++ +L  +L DEK  KIFHY RFD+A L     +  + +FCTKIAS+L RTYTN+HGL
Sbjct: 66  TSSSTHLKALLEDEKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGL 125

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           KD + ELLGI + K+ QSSDW + +DL+ EQL YAA+DV +L     +    L+R  R +
Sbjct: 126 KDLINELLGIELDKSSQSSDWGSNEDLTKEQLDYAANDVRYLIEAMHKLKVILKRENRYE 185

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   A+LD+L + N  IF H
Sbjct: 186 LAQKCFETVSVHADLDILKFSN--IFEH 211


>gi|222085490|ref|YP_002544020.1| ribonuclease D [Agrobacterium radiobacter K84]
 gi|221722938|gb|ACM26094.1| ribonuclease D [Agrobacterium radiobacter K84]
          Length = 381

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 6/200 (3%)

Query: 7   HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
               + A C      + I +DTE L        LC++Q++     V +  +A G    P 
Sbjct: 4   TTAQLEAACQELAKSEFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGLDLKP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ +    K+FH  R DI ++F    +   P+F T++A+ +   + +       +  
Sbjct: 63  FFELMANTAVMKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  I I K+ + +DWS   LS++QL YA +DV HL  + L   E+L+R GR+        
Sbjct: 122 IKNIQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLSLKEQLEREGRASWLLEEMA 181

Query: 186 FLMDRAELDLL---GWENVD 202
            L  R   DL     W+ + 
Sbjct: 182 ILEARETYDLHPDDAWQRLK 201


>gi|260466883|ref|ZP_05813067.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
 gi|259029385|gb|EEW30677.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
          Length = 383

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +    A  A    D + VDTE +        LC++Q++    T  I  +++  
Sbjct: 1   MHVITTQKELETALAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLSSDI 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P    ++ +E   K+FH  R DI ++ +   +   PVF T++A+ +   + +     
Sbjct: 61  DLRP-FFKLMANEAVVKVFHAARQDIEIIVHLGDLVPHPVFDTQVAAMVC-GFGDSVSYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++ + G  + K+ + +DW    LSD+QL YA +DV HL  +      +L R  R+   
Sbjct: 119 QLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLNAELARENRAHWL 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
               + L  R   D      W+ + 
Sbjct: 179 NEEMDVLTSRETYDPHPEDAWKRLK 203


>gi|189184295|ref|YP_001938080.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda]
 gi|189181066|dbj|BAG40846.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda]
          Length = 210

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 94/210 (44%), Positives = 127/210 (60%), Gaps = 9/210 (4%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-------DGTVDIIRI 56
           I +   DIP          +A+DTET+GL   RDRLC++Q           D  V +++ 
Sbjct: 3   IHIFINDIPDNLM--ISGDLAIDTETMGLNLIRDRLCLLQFCQESKDDTIDDKEVFLVKF 60

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              Q N  NL  +L+D+ R KIFH+ RFD+A + Y  GV +  +FCT +AS+L RTYT+ 
Sbjct: 61  EDQQYNCRNLKKLLMDDGRTKIFHFARFDLAAIQYYLGVTLNNIFCTNVASKLVRTYTDS 120

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           HGLKD  +ELLGI ISK  QSSDW    L+ +Q +YAA DVV+LH ++    E L R  R
Sbjct: 121 HGLKDLCRELLGIQISKQCQSSDWGGQSLTSDQEEYAAKDVVYLHRIKNILEEMLIREQR 180

Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIFSH 206
            D+A     FL  RAELD++GW+++DI SH
Sbjct: 181 LDIAQKIFKFLPARAELDVIGWQDIDILSH 210


>gi|319784197|ref|YP_004143673.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170085|gb|ADV13623.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 383

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +       A    D + VDTE +        LC++Q++    T  I  +A   
Sbjct: 1   MHVITTQKELETVLAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLAPDI 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P    ++ +E   K+FH  R DI ++ +   +   PVF T++A+ +   + +     
Sbjct: 61  DLKP-FFRLMANEAVVKVFHAARQDIEIIVHLGDLVPHPVFDTQVAAMVC-GFGDSVSYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++ + G  + K+ + +DW    LSD+QL YA +DV HL  +    + +L+R  R+   
Sbjct: 119 QLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLSAELERENRAHWL 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L  R   D      W+ + 
Sbjct: 179 NEEMEVLTSRETYDPHPEDAWKRLK 203


>gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
 gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
          Length = 382

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT I  ++  +           IAVDTE +       +LC++Q +       I   A G 
Sbjct: 1   MTPITTNDALVQFCSDVASAPFIAVDTEFMRETTYWPKLCLIQAATPTHEAIIDPQADGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P L  +L D    K+FH  R D  +     G   +P+F T++A+ +   + +Q    
Sbjct: 61  DLTPFL-DILRDPAIVKVFHAARQDTEIFVK-LGAMPKPMFDTQVAA-MAAGFGDQVAYD 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++++L I++ K  + +DWS   LSD QL YA  DV HL AL  +  ++L R GR D  
Sbjct: 118 GLVRQMLKIDLDKGSRFTDWSRRPLSDAQLTYAIGDVTHLAALYPKLRDRLAREGRLDWV 177

Query: 181 TSCCNFLMDRAELDL---LGWENVD 202
           TS    L++    D      W+ + 
Sbjct: 178 TSEMEDLVNPELYDTTPDKAWKRLK 202


>gi|154247067|ref|YP_001418025.1| ribonuclease D [Xanthobacter autotrophicus Py2]
 gi|154161152|gb|ABS68368.1| ribonuclease D [Xanthobacter autotrophicus Py2]
          Length = 382

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A         + VDTE L       +LC+VQ++  +  V I  +A G 
Sbjct: 1   MDPISSTEALAAACERLARHPFVTVDTEFLRETTFWPKLCVVQVASPEEAVLIDALADGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ +E+  K+FH GR DI ++++   +   PVF T++A+ +   Y +     
Sbjct: 61  DLAP-FYRLMANERVMKVFHAGRQDIEIIWHQARLIPHPVFDTQVAAMVL-GYGDSISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++ + G  + K+ + +DWS   LS  Q+ YA +DV HL  + ++ T  L+  GR++  
Sbjct: 119 QLVQRVTGHALDKSSRFTDWSRRPLSQAQIVYAVADVTHLRDIYIKLTTDLETRGRAEWV 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
               + L   A  +      WE + 
Sbjct: 179 GEEMHVLTSPATYEQHPDSAWERLK 203


>gi|121601718|ref|YP_989156.1| ribonuclease D [Bartonella bacilliformis KC583]
 gi|120613895|gb|ABM44496.1| ribonuclease D [Bartonella bacilliformis KC583]
          Length = 391

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +    A    R  D + VDTE +       +LC++QL+  + T  I  +    
Sbjct: 1   MELITKTKDLEIAIATLRNSDFVTVDTEFIRETTFWPQLCLIQLASPNSTALIDPMVPDI 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P    +++D+   K+FH  R DI ++++   +   P+F T+IA  +   + +     
Sbjct: 61  DLQP-FFDLMIDKNIVKVFHAARQDIEIIYHLGRIIPFPLFDTQIAGAIC-GFGDSISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             +    G ++ K+ + +DWS   LS++Q+ YA +DV +L  + L   ++L+   R    
Sbjct: 119 QIVYHCTGQHLDKSSRFTDWSCRPLSEKQILYALADVTYLRDVYLSLKKQLEESKRFHWM 178

Query: 181 TSCCNFLMDRAELDL---LGWENVD 202
                 L      D+     W+ V 
Sbjct: 179 DGEMAILSTPTTYDIPEDEAWKKVK 203


>gi|319898851|ref|YP_004158944.1| Ribonuclease D [Bartonella clarridgeiae 73]
 gi|319402815|emb|CBI76366.1| Ribonuclease D [Bartonella clarridgeiae 73]
          Length = 385

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 2/195 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I           A R  + + VDTE +       +LC++Q++  D T  I  +A   
Sbjct: 1   MKLITTTTDLEITIAALRNSNFVTVDTEFIRETTFWPQLCLIQVASPDITTLIDPMAQDI 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P    +++D+K  K+FH  R DI  +++  GV   P+F T++A  +   + +     
Sbjct: 61  NLQP-FFDLMIDKKVVKVFHAARQDIETIYHLGGVIPSPLFDTQVAGSIC-GFGDSISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++   G ++ K+ + +DWS   LS++QL YA +DV +L  + L   ++L++  R+   
Sbjct: 119 QIVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLTLKKQLEKKKRTHWM 178

Query: 181 TSCCNFLMDRAELDL 195
                 L+     D+
Sbjct: 179 NDEMAILLAPTTYDI 193


>gi|192291826|ref|YP_001992431.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
 gi|192285575|gb|ACF01956.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
          Length = 392

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   E  +   CA       I VDTE L        LC+VQ++  +  + I  +A G
Sbjct: 1   MDLISTSE-QLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ +E+  K+FH  R DI ++++  G+   P+F T++A+ +   Y +    
Sbjct: 60  IDLKP-FFDLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ + G    K  + +DWS   L+ EQ+ YA SDV HL  +       L++ GRSD 
Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +     L   +  D+     WE +   
Sbjct: 178 VSEEMEVLTSPSTYDVHPERAWERLKTR 205


>gi|163792851|ref|ZP_02186827.1| Ribonuclease D [alpha proteobacterium BAL199]
 gi|159181497|gb|EDP66009.1| Ribonuclease D [alpha proteobacterium BAL199]
          Length = 386

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 6/207 (2%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+      + A C        +AVDTE +       +LC+VQL+  D  V +  +A G  
Sbjct: 2   TLVTDTASLSALCDRLARERYVAVDTEFMRDKTYYAKLCLVQLAGADEAVAVDTLAPGID 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            AP L  ++ +    K+FH  R D+ +  +       P+F T+IA+ +   + +      
Sbjct: 62  LAP-LYALMANPDVLKVFHAARQDVEIFVHQADAVPAPLFDTQIAAMVC-GFGDAVSYDR 119

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ L G+ + K  + +DWS   LS  Q++YA +DV+HL     +   KL++ GR +  +
Sbjct: 120 LVRGLTGVKLDKTSRFTDWSHRPLSSRQIEYALADVIHLRPAYEKLHRKLEKTGRLEWLS 179

Query: 182 SCCNFLMDRAELDL---LGWENVDIFS 205
                L D A   +     W  + I S
Sbjct: 180 EEMAVLTDTATYKVPPEQSWRRLKIRS 206


>gi|220924978|ref|YP_002500280.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
 gi|219949585|gb|ACL59977.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
          Length = 389

 Score =  235 bits (600), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 3/194 (1%)

Query: 1   MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   +G + A CA       + VDTE +       +LC++Q++  DG+  ++   A 
Sbjct: 1   MKLITSTDG-LAATCAQFATQPFVTVDTEFMRETTYYPKLCLIQIAAPDGSTALVDPLAP 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +      ++ DE+  K+FH  R D+ +++   G+  +P F T++A+ +   Y +    
Sbjct: 60  AIDLTPFFALMGDERVLKVFHSARQDLEIIWLQGGLLPQPFFDTQVAAMVC-GYGDSVSY 118

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           +  + ++    I K+ + +DWS   LS+ QL YA SDV HL  +      +L    R   
Sbjct: 119 EQLVNDVAKAKIDKSSRFTDWSRRPLSEAQLSYALSDVTHLIKVYEALARQLLATDRGAW 178

Query: 180 ATSCCNFLMDRAEL 193
                  L      
Sbjct: 179 LDEEMAVLTSPETY 192


>gi|39936108|ref|NP_948384.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
 gi|39649962|emb|CAE28486.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
          Length = 392

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   E  +   CA       I VDTE L        LC+VQ++  +  + I  +A G
Sbjct: 1   MDLISTSE-QLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ +E+  K+FH  R DI ++++  G+   P+F T++A+ +   Y +    
Sbjct: 60  IDLKP-FFDLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ + G    K  + +DWS   L+ EQ+ YA SDV HL  +       L++ GRSD 
Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +     L   +  D+     WE +   
Sbjct: 178 VSEEMEVLTSPSTYDVHPERAWERLKTR 205


>gi|16125948|ref|NP_420512.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|221234713|ref|YP_002517149.1| ribonuclease D [Caulobacter crescentus NA1000]
 gi|13423116|gb|AAK23680.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|220963885|gb|ACL95241.1| ribonuclease D [Caulobacter crescentus NA1000]
          Length = 389

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 8/205 (3%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I     ++ A C        +AVDTE +       +LC++Q++       I  +A  
Sbjct: 1   MKLITTT-AELAAFCNGLAGEPFVAVDTEFMRETTYWPKLCLIQVASPTQEAVIDPLADN 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P LV ++ DE+  K+FH  R D+ +         +P+F T++A  +   +  Q   
Sbjct: 60  IDLEPLLV-VMRDERILKVFHAARQDVEIF-NNLKAMPKPLFDTQVAG-MAAGFGEQIAY 116

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++++L I I K+ + +DW+   L+D QL YA +DV HL  L     E+L+  GR   
Sbjct: 117 DALVRQMLRIEIDKSSRFTDWARRPLTDAQLSYALADVTHLAKLFPILRERLETSGRLAW 176

Query: 180 ATSCCNFLMDRAELDL---LGWENV 201
                  + D A  D+     W  +
Sbjct: 177 VEEEMTAISDPAAYDVDPEKAWRRL 201


>gi|262276193|ref|ZP_06054002.1| ribonuclease D [Grimontia hollisae CIP 101886]
 gi|262220001|gb|EEY71317.1| ribonuclease D [Grimontia hollisae CIP 101886]
          Length = 405

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 13/193 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR V A+ +DTE +       RL ++QL  G+    I  I     +   L G+L DE   
Sbjct: 50  ARQVPAVMLDTEFVRTRTLYPRLGLIQLYDGETLSLIDPIE--LDDLSPLWGLLTDESVV 107

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V ++  G    P+  T+I +     +    G    ++E L + + K + 
Sbjct: 108 KVLHACSEDLEVFYHYAGAMPTPMVDTQIMAAFL-GHGLSTGFASLVEEYLVVTLDKGEA 166

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL--------- 187
            +DW A  LS++QL+YAA+DV +L  L  + ++++   G  +     C  +         
Sbjct: 167 RTDWCARPLSEKQLEYAAADVYYLLPLYNELSKRVSAAGWDEAVKQECALMASKRGKTPE 226

Query: 188 MDRAELDL-LGWE 199
            ++A LD+   W+
Sbjct: 227 PEKAYLDIKNAWQ 239


>gi|217976404|ref|YP_002360551.1| ribonuclease D [Methylocella silvestris BL2]
 gi|217501780|gb|ACK49189.1| ribonuclease D [Methylocella silvestris BL2]
          Length = 405

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 7/204 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M+ I   E  +   C        + VDTE L       +LC+VQL+  D  V +  +A+G
Sbjct: 7   MSLITTTEA-LAEVCQRLASHAFVTVDTEFLRETTFWPKLCVVQLASADEAVAVDALASG 65

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
              AP L  ++ D    K+FH  R D+ +++    +   P+F T++A+ +   + +Q   
Sbjct: 66  LDLAP-LFELMADPAVVKVFHAARQDLEIVWNLAKIIPAPLFDTQVAAMVC-GFGDQVSY 123

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            D ++ +  +++ K+ + +DWS   L   Q+ YA +DV +L  +     +KL+  GR   
Sbjct: 124 GDLVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKETGRLGW 183

Query: 180 ATSCCNFLMDRAELDL---LGWEN 200
            +     L   A  +      WE 
Sbjct: 184 LSDEMALLTSPATYEQHPDNAWER 207


>gi|315500006|ref|YP_004088809.1| ribonuclease d [Asticcacaulis excentricus CB 48]
 gi|315418018|gb|ADU14658.1| ribonuclease D [Asticcacaulis excentricus CB 48]
          Length = 382

 Score =  234 bits (599), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 5/194 (2%)

Query: 1   MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M TI      +   CA       I VDTE +       +LC++Q +  +    I  ++  
Sbjct: 1   MPTITTTAA-LTDFCAKIASAPFITVDTEFMRETTYWPKLCLIQAASEEHAGIIDPLSPD 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P L  +L D    K+FH  R D+ +     G    PVF T++A+ +   + +Q   
Sbjct: 60  LDLKPFL-DLLTDPAILKVFHACRQDVEIF-NNLGAMPAPVFDTQVAA-MAAGFGDQVAY 116

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              +++++ ++I K  + +DWS   LS++QLQYA  DV HL  L  +  EKL+   R + 
Sbjct: 117 DSLVRQVIKVDIDKGSRFTDWSRRPLSEQQLQYALGDVTHLARLYPKLVEKLKAQNRYEW 176

Query: 180 ATSCCNFLMDRAEL 193
             +    L D    
Sbjct: 177 VAAEMADLTDPKLY 190


>gi|162146523|ref|YP_001600982.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|209543478|ref|YP_002275707.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785098|emb|CAP54642.1| putative Ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531155|gb|ACI51092.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 393

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 2/176 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    +++DTE +        LC+VQL+  D  V +  +A G   AP L  +L D +  
Sbjct: 28  LRREPFVSIDTEFVRERTYWPELCLVQLAGQDEVVVVDTLAPGIDLAP-LGVLLDDPEVV 86

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH  R D+ +  Y FG     +F T++A+ +   + +Q G  + +  L G +I KA +
Sbjct: 87  KVFHAARQDLEIFLYLFGHLPAALFDTQVAAMVA-GFGDQVGYDNLVASLTGAHIDKAHR 145

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            SDWSA  LS+ Q+ YAA+DV HL  +     E+L+R GR D   S    L D A 
Sbjct: 146 FSDWSARPLSEAQIAYAAADVTHLRTVYQLLLERLEREGRLDWVASDLAVLSDPAT 201


>gi|330991792|ref|ZP_08315742.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
 gi|329761260|gb|EGG77754.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
          Length = 395

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 3/188 (1%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
               ++ A  A  R    + +DTE +        LC+VQL+ G+  V +I   A   +  
Sbjct: 16  TTTAELEAVTARLRREPFVTIDTEFVRERTYWPELCLVQLA-GENDVVVIDTTAPGIDLS 74

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           +L G+L D    K+FH  R D+ +  + F      +F T++A+ +   Y +Q G  + + 
Sbjct: 75  SLGGLLDDAGVIKVFHAARQDLEIFLHLFDRLPAALFDTQVAAMVA-GYGDQVGYDNLVW 133

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            LLG+ I K+ + SDWS   LS  Q+ YAA+DV +L  +  Q   +L++ GR D   +  
Sbjct: 134 SLLGVQIDKSHRFSDWSVRPLSAAQIGYAAADVTYLRQVYGQLLAQLEKEGRLDWVAAEL 193

Query: 185 NFLMDRAE 192
           + L + A 
Sbjct: 194 DVLNNPAT 201


>gi|304321318|ref|YP_003854961.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
 gi|303300220|gb|ADM09819.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
          Length = 383

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 3/191 (1%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+ A C      D + VDTE +       +LC++Q++  +    I  +AA    
Sbjct: 3   IVTQTQDLTALCGRLAKHDFVTVDTEFMRERTYYPKLCLIQVASTEEAAIIDPLAAALDL 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           AP L  +L D    K+FH  R D+ + +   G    P+F T+IA+ +   + +Q G +  
Sbjct: 63  APFL-ELLADPSVLKVFHAARQDLEIFYKLMGKVPAPLFDTQIAA-MACGHGDQVGYEAL 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E+ G  + K  + +DW+   LSD+QL YA  DV HL         +L+  GR +   +
Sbjct: 121 IREVTGAQVDKGSRFTDWAKRPLSDKQLTYALGDVTHLVDAYQALITELEEKGRLEWIHA 180

Query: 183 CCNFLMDRAEL 193
               L D    
Sbjct: 181 EMTQLNDPTLY 191


>gi|316933724|ref|YP_004108706.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
 gi|315601438|gb|ADU43973.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
          Length = 387

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   E  +   CA       I VDTE L        LC+VQ++  +  + I  +A G
Sbjct: 1   MDLISTSE-QLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEDALVIDALADG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ +E+  K+FH  R DI ++++  G+   P+F T++A+ +   Y +    
Sbjct: 60  IDLKP-FFDLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVL-GYGDSIAY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ + G    K  + +DWS   L+ EQ+ YA SDV HL  +       L++ GRSD 
Sbjct: 118 DQLVERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +     L   +  D+     WE +   
Sbjct: 178 VSEEMEVLTSPSTYDVHPERAWERLKTR 205


>gi|154253761|ref|YP_001414585.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
 gi|154157711|gb|ABS64928.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
          Length = 427

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I  +E    A         + VDTE +        LC++QL+     + +  +A   
Sbjct: 44  MEIITTNEALRAACDRLSTAGFVTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDL 103

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ +    K+FH  R DI +  +       P+F T++A+ +   + +  G +
Sbjct: 104 DLAP-FYALMKNRNVVKVFHAARQDIEIFCHEGKAIPDPLFDTQVAAMVC-GFGDSVGYE 161

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             +++L G ++ K+ + +DWS   LSD+QLQYA +DV +L  +     ++L    R+   
Sbjct: 162 TLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVLAKRLTHTKRAHWV 221

Query: 181 TSCCNFLMDRAELDL---LGWENVD 202
                 L D     +     W+ V 
Sbjct: 222 AEEMAVLQDPETYAMRPENAWKRVK 246


>gi|84687040|ref|ZP_01014923.1| ribonuclease D [Maritimibacter alkaliphilus HTCC2654]
 gi|84665014|gb|EAQ11495.1| ribonuclease D [Rhodobacterales bacterium HTCC2654]
          Length = 387

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 10/215 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M TI   E  +   C  A     + VDTE L       +LC+VQL+      +    ++ 
Sbjct: 1   MKTITTTEA-LADYCRRAATFPYVTVDTEFLRERTYYSKLCLVQLAVMGDDDEVDAVLVD 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
             A   +   L  +  DE   K+FH  R D+ + +   G+   P+F T++A+ +   + +
Sbjct: 60  PLADGLSLEPLYELFRDEGVVKVFHAARQDLEIFYVDAGLIPSPLFDTQVAAMVC-GFGD 118

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  ++++    + K+ + +DWS   L+D Q +YA  DV HL  +      +L+  G
Sbjct: 119 QAGYETLVRKIAKAQLDKSSRFTDWSRRPLTDAQKKYAIGDVTHLRVIYEFLKAQLEETG 178

Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
           R+       + L D     +     W+ V   ++S
Sbjct: 179 RAKWVKEELSVLTDPDTYTVDPDEAWKRVKTRTNS 213


>gi|304391965|ref|ZP_07373907.1| ribonuclease D [Ahrensia sp. R2A130]
 gi|303296194|gb|EFL90552.1| ribonuclease D [Ahrensia sp. R2A130]
          Length = 383

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +    A       D + VDTE L        LC++Q++  D    +  +A G 
Sbjct: 1   MKIIETTQELATACKDFAQHDYVTVDTEFLRETTFWPILCLIQIAGPDDECIVDPMADGI 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P    ++ D    K+FH  R D+ ++++  G+  +P+F T++A+ +   Y +     
Sbjct: 61  DLQP-FFELMADTSVVKVFHAARQDVEIVYHLGGLVPKPLFDTQVAAMVC-GYGDSVAYN 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             +  + G  I K+ + +DW+   L+ +QL YA +DV HL  +       L++  R    
Sbjct: 119 ALVSRITGGVIDKSSRFTDWARRPLTTKQLDYALADVTHLRDVYQSLKADLEKKNRKHWV 178

Query: 181 TSCCNFLMDRAELDL---LGWENVD 202
               + L +    DL     W  + 
Sbjct: 179 DEEMDVLTNPETYDLPVEKAWSRLK 203


>gi|13476899|ref|NP_108468.1| ribonuclease D [Mesorhizobium loti MAFF303099]
 gi|14027660|dbj|BAB53929.1| ribonuclease D [Mesorhizobium loti MAFF303099]
          Length = 383

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +       A    D + VDTE +        LC++Q++    T  I  ++   
Sbjct: 1   MHVITTQKELETVLAAFEKSDFVTVDTEFIRETTFWPILCLIQMAAPGVTALIDPLSPDI 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ +E   K+FH  R DI ++ +   +   PVF T++A+ +   + +     
Sbjct: 61  NLAP-FFRLMANEAVVKVFHAARQDIEIIVHLGDLVPHPVFDTQVAAMVC-GFGDSVSYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++ + G  + K+ + +DW    LSD+QL YA +DV HL  +    + +L R  R+   
Sbjct: 119 QLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLSAELARENRAHWL 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
               + L  R   D      W+ + 
Sbjct: 179 NEEMDVLTSRETYDPHPEDAWKRLK 203


>gi|114569802|ref|YP_756482.1| ribonuclease D [Maricaulis maris MCS10]
 gi|114340264|gb|ABI65544.1| ribonuclease D [Maricaulis maris MCS10]
          Length = 386

 Score =  234 bits (597), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 7/209 (3%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT I   E    A  A      +AVDTE +       +LC++Q + G+  V I  +A G 
Sbjct: 1   MTMITTTEALEAACDALLQHPYVAVDTEFMRETVYWPQLCLIQAAAGETEVIIDPLAEGI 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG--VRVRPVFCTKIASRLTRTYTNQHG 118
              P    ++ DE+  K+FH  R D+ + F+  G  +   P+F +++A+ +     +   
Sbjct: 61  DLEP-FWELMADERIIKVFHAARQDLEIFFHQGGDALIPHPMFDSQVAA-MALGLGDSIA 118

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               ++ LL   I K  + +DWS   LSD Q +YA +DV HL  L     E+L++ GR++
Sbjct: 119 YDALVRTLLNRPIDKGPRFTDWSRRPLSDAQTKYAIADVTHLRDLYPMMVERLEKTGRTE 178

Query: 179 LATSCCNFLMDRAELDL---LGWENVDIF 204
                   L   +   L     W  + + 
Sbjct: 179 WLAGEMKTLTSPSTYRLDPEESWRRMKLR 207


>gi|27379246|ref|NP_770775.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
 gi|27352397|dbj|BAC49400.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
          Length = 382

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I     D+ A C+       I VDTE L        LC+VQ++  +  + I  +A G
Sbjct: 1   MDLITTT-ADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASPEEAIVIDTLAVG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ +E   K+FH  R DI ++++   +   PVF T++A+ +   Y +    
Sbjct: 60  IDLKP-FFELMGNEAVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAAMVL-GYGDSIAY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++++ G    K  + +DWS   L+ EQ+ YA SDV HL  +       L++  RS+ 
Sbjct: 118 DQLVEKVTGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +     L      D      WE +   
Sbjct: 178 VSIEMEVLTSPRTYDFHPERAWERLKTR 205


>gi|37522692|ref|NP_926069.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
 gi|35213694|dbj|BAC91064.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
          Length = 208

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 90/205 (43%), Positives = 133/205 (64%), Gaps = 5/205 (2%)

Query: 5   RVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           ++   D+  E A  Y+ +  +AVD+E +GL+P RDRLC+VQL    G V ++R++AG   
Sbjct: 6   QIFTDDLSPEVAGTYLQSGLLAVDSEAMGLLPHRDRLCLVQLCDEAGLVSLVRLSAGLTQ 65

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           A  L  +L      K+FHY RFD+A+L +  G+RV+P+ CTK+AS+L RTY+ +HGLKD 
Sbjct: 66  ASQLQKVLEAPAVIKLFHYARFDVAMLRHHLGIRVQPIVCTKVASKLARTYSPRHGLKDL 125

Query: 123 LKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           + E +G+ + K+ QSSDW A  +LS+EQL+YAA+DV +L     +    L+R GR +LA 
Sbjct: 126 VLETVGVELDKSAQSSDWGAVLELSEEQLRYAANDVRYLIPAWRKLETMLRREGRFELAR 185

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
            C   L  + +LDLLG+ +V  F H
Sbjct: 186 RCFAHLETQVDLDLLGYSSV--FEH 208


>gi|83593408|ref|YP_427160.1| ribonuclease D [Rhodospirillum rubrum ATCC 11170]
 gi|83576322|gb|ABC22873.1| Ribonuclease D [Rhodospirillum rubrum ATCC 11170]
          Length = 386

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 7/211 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   + D+   CA       + VDTE +       +LC++QL+ G      +   A 
Sbjct: 1   MPLISTTK-DLADFCARLSTESFVTVDTEFMREKTYWPKLCLIQLA-GTTEAHCVDPLAP 58

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +   L  ++ +E   K+FH  R D+ +  +  G   +P+F T++A+ +   + +  G 
Sbjct: 59  DIDMAPLFALMANESVLKVFHAARQDLEIFLHESGHLPKPIFDTQVAAMVC-GFGDSVGY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           +  + +L    I K+ + +DW+   L+D QL YAA DV HL  +  +  E L   GR+  
Sbjct: 118 ETLVAKLAKARIDKSMRFTDWARRPLNDRQLVYAAGDVTHLRVVYERLAETLAANGRTAW 177

Query: 180 ATSCCNFLMDRAELDLL---GWENVDIFSHS 207
                  L D A   +     W  +   S S
Sbjct: 178 LDQEMAILTDPAHYRVEPEDAWMRIKARSRS 208


>gi|328543996|ref|YP_004304105.1| ribonuclease d protein [polymorphum gilvum SL003B-26A1]
 gi|326413740|gb|ADZ70803.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
          Length = 394

 Score =  233 bits (596), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           MT I   +    A       D + VDTE L       +LC++Q++  D  V +  +A G 
Sbjct: 1   MTVITTTDALADACSRLASHDYVTVDTEFLRETTFWPKLCVIQMAGPDDAVIVDALADGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP L  ++ +E+  K+FH  R DI ++++  G+   P+F T++A+ +   + +     
Sbjct: 61  DLAPFL-DLMRNERVTKVFHAARQDIEIVYHLGGLIPHPLFDTQVAAMVC-GFGDSISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++ + G  I K+ + +DW+   L+ +QL YA +DV +L  +       L    RS   
Sbjct: 119 QLVQRITGARIDKSSRFTDWARRPLTQKQLDYALADVTYLRDVYRFLKANLAEQDRSHWV 178

Query: 181 TSCCNFLMDRAEL---DLLGWENVD 202
                 L          +  W+ + 
Sbjct: 179 EDEMEILTSEGTYRTEPVNAWQRLK 203


>gi|156973677|ref|YP_001444584.1| ribonuclease D [Vibrio harveyi ATCC BAA-1116]
 gi|156525271|gb|ABU70357.1| hypothetical protein VIBHAR_01380 [Vibrio harveyi ATCC BAA-1116]
          Length = 382

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   CA AR  D + +DTE + +     +L ++QL  G     I        +
Sbjct: 15  IITKNKDLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDP--TELTD 72

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             + V +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 73  MTSFVELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 131

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 132 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAGWWEAVQQ 191

Query: 183 CCNFLMDR---------AELDLLG-WE 199
             + L+ +         A LD+ G W+
Sbjct: 192 ESDLLVSKRIRNVNEENAYLDIKGAWQ 218


>gi|91070231|gb|ABE11151.1| putative ribonuclease D [uncultured Prochlorococcus marinus clone
           HF10-11H11]
          Length = 211

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/208 (40%), Positives = 123/208 (59%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
             I +   D+  +     +    +A+DTE +GL+  RDRLC+VQ+         I+I   
Sbjct: 6   KNIDLLYSDLTEDLYHLYKKSSYLAIDTEAMGLIHGRDRLCLVQICNEFNRTSCIKIELN 65

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             ++P+L  +L D+K  KIFHY RFD+A L     +  + +FCTKIAS+L RTYTN+HGL
Sbjct: 66  TSSSPHLKALLEDDKITKIFHYARFDVAALKCNLKINTKNIFCTKIASKLARTYTNKHGL 125

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           KD + ELLGI + K+ QSSDW + +DL+ +QL YAA+DV +L     +    L+R  R +
Sbjct: 126 KDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMHKLKVILERENRYE 185

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   A+LD+L + N  IF H
Sbjct: 186 LAQKCFETVSVHADLDILKFSN--IFEH 211


>gi|326404838|ref|YP_004284920.1| ribonuclease D [Acidiphilium multivorum AIU301]
 gi|325051700|dbj|BAJ82038.1| ribonuclease D [Acidiphilium multivorum AIU301]
          Length = 392

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 58/184 (31%), Positives = 80/184 (43%), Gaps = 3/184 (1%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           + A C        + VDTE +        LC+VQL   +    I   A G   AP L  +
Sbjct: 19  LAALCDRLAAEPFVTVDTEFMREKTYFPELCVVQLGGANDVAVIDAQAEGLDLAP-LGAL 77

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             +    K+FH  R DI +    FG    P+F T++A+ +   + +Q G    +  L G 
Sbjct: 78  FANPAVTKVFHACRQDIEIFLLKFGAVPTPLFDTQVAAMVA-GFGDQVGYDTLVSSLAGG 136

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            I KA + SDWSA  LS  Q+ YAA+DV  L  +      +L R GR D        L D
Sbjct: 137 RIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLTREGRLDWVAEEAAVLAD 196

Query: 190 RAEL 193
            A  
Sbjct: 197 PATY 200


>gi|144899165|emb|CAM76029.1| Ribonuclease D [Magnetospirillum gryphiswaldense MSR-1]
          Length = 406

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 6/203 (2%)

Query: 9   GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            ++ A C        I VDTE +       +LC+VQL+  D    +  +A G   AP L 
Sbjct: 15  AELAAFCQRLSSAPYITVDTEFMREKTYYPQLCLVQLAGPDEARAVDPLAPGMDLAP-LF 73

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            ++ +    K+FH  R D+ +  +  G    P+F T++A+ +   + +  G +    +L 
Sbjct: 74  ELMANPNVLKVFHAARQDVEIFLHLSGAVPAPLFDTQVAAMVC-GFGDSVGYETLASQLA 132

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
              I K+Q+ +DW+   L+++Q+QYA +DV HL     +   KL+R GR D        L
Sbjct: 133 KARIDKSQRFTDWALRPLTEKQVQYALADVTHLRVAYEKLVRKLERNGRLDWLVDEMAEL 192

Query: 188 --MDRAELD-LLGWENVDIFSHS 207
              D    D    W+ +   S S
Sbjct: 193 ASPDTYRTDPENAWKRLKPRSSS 215


>gi|148261351|ref|YP_001235478.1| ribonuclease D [Acidiphilium cryptum JF-5]
 gi|146403032|gb|ABQ31559.1| ribonuclease D [Acidiphilium cryptum JF-5]
          Length = 392

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 82/191 (42%), Gaps = 4/191 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   E  + A C        + VDTE +        LC+VQL   +    I   A G   
Sbjct: 13  IETTEA-LAALCDRLAAEPFVTVDTEFMREKTYFPELCVVQLGGANDVAVIDAQAEGLDL 71

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           AP L  +  +    K+FH  R DI +    FG    P+F T++A+ +   + +Q G    
Sbjct: 72  AP-LGALFANPAVTKVFHACRQDIEIFLLKFGAVPAPLFDTQVAAMVA-GFGDQVGYDTL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +  L G  I KA + SDWSA  LS  Q+ YAA+DV  L  +      +L R GR D    
Sbjct: 130 VSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLTREGRLDWVAE 189

Query: 183 CCNFLMDRAEL 193
               L D A  
Sbjct: 190 EAAVLADPATY 200


>gi|89054329|ref|YP_509780.1| ribonuclease D [Jannaschia sp. CCS1]
 gi|88863878|gb|ABD54755.1| ribonuclease D [Jannaschia sp. CCS1]
          Length = 386

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 8/214 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M        ++ A CA A     + VDTE L       +LC+VQ++     D    +I  
Sbjct: 1   MPHTITTTDELAAYCARAATQPYVTVDTEFLRERTYFAQLCLVQVAMPGTDDTDAVLIDP 60

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            A   +   L  +  +    K+FH  R D+ + F   G+   P+F T++A+ +   + +Q
Sbjct: 61  LAEGLSLEPLYELFRNVNVVKVFHAARQDLEIFFVEGGLVPTPLFDTQVAAMVC-GFGDQ 119

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++ +   N+ K+ + +DWS   LSD Q  YA +DV +L  +    + +L R  R
Sbjct: 120 VGYETLVRRIAKANLDKSSRFTDWSRRPLSDAQKVYALADVTYLREIYEYLSAELARTDR 179

Query: 177 SDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
           +         L +     +     W+ + + S+S
Sbjct: 180 THWLEEELAQLTNADAYVVDPENAWKRLKLRSNS 213


>gi|269960729|ref|ZP_06175101.1| ribonuclease D [Vibrio harveyi 1DA3]
 gi|269834806|gb|EEZ88893.1| ribonuclease D [Vibrio harveyi 1DA3]
          Length = 372

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 4/188 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   CA AR  D + +DTE + +     +L ++QL  G     I        +
Sbjct: 5   IITKNKDLEEVCALAREADVVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDP--TELTD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             + V +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 63  MTSFVELLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 122 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAGWWEAVQQ 181

Query: 183 CCNFLMDR 190
             + L+ +
Sbjct: 182 ESDLLVSK 189


>gi|90419527|ref|ZP_01227437.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
 gi|90336464|gb|EAS50205.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
          Length = 385

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M TI     ++   C+     + + VDTE +        LC++Q++  D  V +  +A G
Sbjct: 3   MHTITTT-AELSEACSRLAAAEFVTVDTEFIRETTFWPELCLIQMASDDLAVLVDPLADG 61

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
              AP    ++ DE+  K+FH  R D+ ++     +   P+F T++A+ +   +      
Sbjct: 62  LDLAP-FFDLMRDERIVKVFHAARQDVEIIHKLGDIIPVPLFDTQVAAMVC-GFGESIAY 119

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              +       I K  + +DW    LSD+QL YA +DV +L  +    + +L   GR+  
Sbjct: 120 DQLVARTTDGRIDKTSRFTDWRRRPLSDQQLAYALADVTYLRDVYRFLSAQLAEKGRTRW 179

Query: 180 ATSCCNFLMDRAELDLL---GWENVDIF 204
                  L D A  DL     W  + + 
Sbjct: 180 VDEEMAVLTDPATYDLHPDDAWRRLKLR 207


>gi|87300944|ref|ZP_01083786.1| putative ribonuclease D [Synechococcus sp. WH 5701]
 gi|87284815|gb|EAQ76767.1| putative ribonuclease D [Synechococcus sp. WH 5701]
          Length = 228

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 94/207 (45%), Positives = 127/207 (61%), Gaps = 5/207 (2%)

Query: 4   IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V EGD+ AE         A+AVDTE +GL+  RDRLC+VQ++     V  IRIA GQ+
Sbjct: 20  FAVFEGDLDAEWLSLLAQAPALAVDTEAMGLVHGRDRLCLVQIADHLDNVCCIRIARGQQ 79

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            AP L  ++     EK+FH+ RFD+A L    G+ V P+FCTK+ASRL RTY+++HGLK+
Sbjct: 80  EAPRLRELMESPAIEKVFHFARFDLAALGEGLGIAVAPLFCTKVASRLARTYSSRHGLKE 139

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++EL+G+ + K  QSSDW   ++L + QL YAA+DV +L A R      L+R  R DLA
Sbjct: 140 VVQELVGVELDKQSQSSDWGRVEELGEAQLVYAANDVRYLLAARHALAAILEREERLDLA 199

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSHS 207
             C   L   AELD   + +V  F HS
Sbjct: 200 RRCFACLPVFAELDRSRFGSV--FEHS 224


>gi|218710187|ref|YP_002417808.1| Ribonuclease D [Vibrio splendidus LGP32]
 gi|218323206|emb|CAV19383.1| Ribonuclease D [Vibrio splendidus LGP32]
          Length = 397

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   C  AR  D + +DTE +       +L ++QL  G+    I  IA     
Sbjct: 30  IITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIA--LDE 87

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               VG+L D    K+ H    D+ V    FG    P+  T+I +     +    G    
Sbjct: 88  MTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-GHGLSTGFAAL 146

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + E +G+++ K++  +DW A  LS +QL YAA+DV +L  +  +  EK+   G  + A  
Sbjct: 147 VSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQQ 206

Query: 183 CCNFL---------MDRAELDLLG-WE 199
             +            D A LD+ G W+
Sbjct: 207 ESDLQVAKRIRKANPDNAYLDIKGAWQ 233


>gi|319408646|emb|CBI82301.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 383

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I        A  A    D + VDTE +       +LC++QL+  + T+ I  +    
Sbjct: 1   MKVITQTTELEIAIAALSNSDFVTVDTEFIRETTFWPQLCLIQLASPNVTMLIDPMVPDI 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                   ++VDEK  K+FH  R DI  +++  G+   P+F T+IA  +   + +     
Sbjct: 61  DLQS-FFDLMVDEKIVKVFHAARQDIETIYHLGGIIPYPLFDTQIAGSIC-GFGDSISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++   G ++ K+ + +DWS   LS++QL YA +DV +L  + L   +KL++  R+   
Sbjct: 119 QIVQRCTGHHLDKSSRFTDWSHRPLSEKQLLYALADVTYLRDVYLSLKKKLEKNKRTHWM 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L+     D+     W+ V 
Sbjct: 179 DDELEILLTPTTYDIPEEDAWKKVK 203


>gi|262394860|ref|YP_003286714.1| ribonuclease D [Vibrio sp. Ex25]
 gi|262338454|gb|ACY52249.1| ribonuclease D [Vibrio sp. Ex25]
          Length = 388

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   C  AR  D + +DTE + +     +L ++QL  G+    I        +
Sbjct: 21  IITKNKDLEEVCIHAREADVVMLDTEFVRIRTFYPQLGLIQLFDGNRLSLIDP--TELTD 78

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 79  MTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFASL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+ + G  +    
Sbjct: 138 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTQAGWWEAVQQ 197

Query: 183 CCNFLMDR---------AELDLLG-WE 199
             + L+ +         A LD+ G W+
Sbjct: 198 ESDLLVSKRIRVTNEENAYLDIKGAWQ 224


>gi|170742646|ref|YP_001771301.1| ribonuclease D [Methylobacterium sp. 4-46]
 gi|168196920|gb|ACA18867.1| ribonuclease D [Methylobacterium sp. 4-46]
          Length = 394

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 8/206 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDG-TVDIIRIAA 58
           M  I   + D+ + CA       + VDTE +       +LC++Q++  DG T  +  +A 
Sbjct: 1   MKLITSTD-DLTSACAHLSTQPFVTVDTEFMRETTYYPKLCLIQIAAPDGTTALVDPLAP 59

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
           G   AP    ++ DE   K+FH  R D+ +++   G+  +P F T++A+ +   Y +   
Sbjct: 60  GIDLAP-FFALMGDEGVLKVFHSARQDLEIIWLQGGLLPQPFFDTQVAAMVC-GYGDSVS 117

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            +  + ++    + K+ + +DWS   LS+ QL YA SDV HL  +      +L    R  
Sbjct: 118 YEQLVNDVAKAKVDKSSRFTDWSRRPLSEAQLTYALSDVTHLIKVYEALARQLLASDRGA 177

Query: 179 LATSCCNFLMDRAELD---LLGWENV 201
                   L      +      W  +
Sbjct: 178 WLDEEMAVLTSPETYEADPAQAWRRL 203


>gi|149915004|ref|ZP_01903533.1| ribonuclease D [Roseobacter sp. AzwK-3b]
 gi|149811192|gb|EDM71029.1| ribonuclease D [Roseobacter sp. AzwK-3b]
          Length = 385

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRI 56
           M T+   E  +   C  AR  D + VDTE L       +LC+VQL+    G     ++  
Sbjct: 1   MKTLTTTE-QLEQFCTRARQFDYVTVDTEFLRERTYYSKLCLVQLAVPGTGAEDAVLVDP 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            AG  +   L  +  DE   K+FH  R D+ + F   GV   P+F T++ + +   +  Q
Sbjct: 60  LAGDLSMAPLYDLFRDESVVKVFHAARQDLEIFFVDAGVIPAPLFDTQVTAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  ++++    + K  + +DWS   L+D Q +YA +DV HL  +      KL +  R
Sbjct: 119 VGYETLVRKIAKEQLDKTSRFTDWSRRPLTDAQKKYALADVTHLRDIYEFLARKLAQSDR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
               T     L       +     W+ V   + S
Sbjct: 179 QKWVTEELQVLTAPETYRVSPDEAWKRVKTRNAS 212


>gi|114704849|ref|ZP_01437757.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
 gi|114539634|gb|EAU42754.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
          Length = 383

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 5/205 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I+  E    A  A      + VDTE +        LC++Q++  D  V +  +A G 
Sbjct: 1   MEPIKTTEALTRACEALSRSPYVTVDTEFIRETTFWPELCLIQMASDDTEVLVDPLAKGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P    ++ DE   K+FH  R D+ +++    V  +P+F T+IA+ +   +       
Sbjct: 61  SLDP-FFALMADESVVKVFHAARQDLEIVYKLGAVIPKPLFDTQIAAMVC-GFGESIAYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             +  L    I K+ + +DW    LSD+QL YA +DV HL  +      +L+   R    
Sbjct: 119 QLVARLTDGRIDKSSRFTDWRHRPLSDKQLTYALADVTHLRDVYKALKAQLEETSRHSWL 178

Query: 181 TSCCNFLMDRAELDLL---GWENVD 202
                 L D    DL     W  + 
Sbjct: 179 DEEMAILADPQTYDLHPDDAWRRMK 203


>gi|170746940|ref|YP_001753200.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
 gi|170653462|gb|ACB22517.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
          Length = 395

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 1/193 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +              + VDTE +       +LC++Q++  DGT  ++   A  
Sbjct: 1   MDLITTTDALRQICTRLAEQPFVTVDTEFMRETTYYPKLCLIQMAAPDGTAVLVDPLAPG 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +    + ++ DE+  K+FH  R D+ +++   G+   P F T++A+ +   Y +    +
Sbjct: 61  IDLDPFIALMADERTVKVFHSARQDLEIIWLIGGILPHPFFDTQVAAMVC-GYGDSVSYE 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + ++    I K+ + +DWS   LS+ QL YA SDV HL  +      +L R  R    
Sbjct: 120 QLVNDVAKAKIDKSSRFTDWSRRPLSEAQLTYALSDVTHLVKIYEVLVAELLRTDRGAWL 179

Query: 181 TSCCNFLMDRAEL 193
                 L      
Sbjct: 180 DEEMAVLTSPETY 192


>gi|123969324|ref|YP_001010182.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601]
 gi|123199434|gb|ABM71075.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601]
          Length = 211

 Score =  231 bits (591), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 87/208 (41%), Positives = 123/208 (59%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
             I     D+  +     +    +A+DTE +GL+  RDRLC+VQ+         I+I   
Sbjct: 6   KNIDFLYSDLTVDLYNLYKKSSYLAIDTEAMGLIHGRDRLCLVQICNEFKRTSCIKIELN 65

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             ++PNL  +L D+K  KIFHY RFD+A L     +  + +FCTKIAS+L RTYTN+HGL
Sbjct: 66  TSSSPNLKALLEDDKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGL 125

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           KD + ELLGI + K+ QSSDW + +DL+ +QL YAA+DV +L    L+    L+R  R +
Sbjct: 126 KDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMLKLKVILKRENRYE 185

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   A+LD+L + N  IF H
Sbjct: 186 LAQKCFETVSVHADLDILKFSN--IFEH 211


>gi|317968782|ref|ZP_07970172.1| ribonuclease [Synechococcus sp. CB0205]
          Length = 225

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 118/206 (57%), Gaps = 5/206 (2%)

Query: 4   IRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             V + D+  E         A+AVDTE +GL+  RDRLC+VQ+S     V  IRI  GQ 
Sbjct: 20  FAVLDHDLNPEWRALLGASSALAVDTEAMGLIHGRDRLCLVQISDDHDNVCCIRIHRGQT 79

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            AP L  ++     EK+FH+ RFD+A L     + V P+FCTKI SRL RTYTN+HGLKD
Sbjct: 80  EAPLLKELMEAAGIEKVFHFARFDVAALAEGLDIHVSPIFCTKIGSRLARTYTNRHGLKD 139

Query: 122 NLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            + EL  + + K  QSSDW   ++LS+ QL YAA+DV +L A R +  E L R  R DLA
Sbjct: 140 LVNELCHVELDKGAQSSDWGRVEELSESQLAYAANDVRYLLAARTRLIEMLVREERLDLA 199

Query: 181 TSCCNFLMDRAELDLLGWENVDIFSH 206
             C   +   ++LD   +    IF H
Sbjct: 200 QRCFACIPVISDLDRGRFGA--IFEH 223


>gi|269967938|ref|ZP_06181978.1| ribonuclease D [Vibrio alginolyticus 40B]
 gi|269827461|gb|EEZ81755.1| ribonuclease D [Vibrio alginolyticus 40B]
          Length = 388

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   C  AR  D + +DTE + +     +L ++QL  G+    I        +
Sbjct: 21  IITKNKDLEEVCTHAREADVVMLDTEFVRIRTFYPQLGLIQLFDGNRLSLIDP--TELTD 78

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 79  MTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFASL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+ + G  +    
Sbjct: 138 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAGWWEAVQQ 197

Query: 183 CCNFLMDR---------AELDLLG-WE 199
             + L+ +         A LD+ G W+
Sbjct: 198 ESDLLVSKRIRVTNEENAYLDIKGAWQ 224


>gi|329114834|ref|ZP_08243590.1| Ribonuclease D [Acetobacter pomorum DM001]
 gi|326695731|gb|EGE47416.1| Ribonuclease D [Acetobacter pomorum DM001]
          Length = 406

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 2/172 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             + VDTE +        LC+VQ+      V I  +A G    P L  +  D    K+FH
Sbjct: 36  SFVTVDTEFMREQTYWPELCLVQIGATHDIVLIDALAEGIDLTP-LKNLFADTAVLKVFH 94

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ +  + F     P+F T++A+ +   + +Q G    +  L G  I K+ + +DW
Sbjct: 95  AARQDLEIFLHLFDALPTPLFDTQVAAMVA-GFGDQVGYDSLVGSLTGHMIDKSHRFTDW 153

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           S   LS  QL YAA DV  L  +  +  +KL++  R D   +    L D A 
Sbjct: 154 SVRPLSPAQLTYAAGDVTWLRLVYERLVKKLEQEQRLDWVAAEMAELEDPAT 205


>gi|163746426|ref|ZP_02153784.1| ribonuclease D [Oceanibulbus indolifex HEL-45]
 gi|161380311|gb|EDQ04722.1| ribonuclease D [Oceanibulbus indolifex HEL-45]
          Length = 385

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 13/216 (6%)

Query: 1   MTTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDII 54
           M TI     D+   C  AARY D + VDTE L       +LC+VQL+         V + 
Sbjct: 1   MKTITTT-ADLAQFCEEAARY-DYVTVDTEFLRERTYYSKLCLVQLAMPGTDDSNAVLVD 58

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
            +A G    P L  +  D    K+FH  R D+ + F    V   P+F T++A+ +   + 
Sbjct: 59  PLAEGISLEP-LYTLFRDTSVVKVFHAARQDLEIFFVDAEVFPEPLFDTQVAAMVC-GFG 116

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            Q G +  ++++    + K  + +DWS   L+D Q  YA +DV HL  +      KL+  
Sbjct: 117 EQVGYETLVRKIAHQALDKTSRFTDWSRRPLTDAQKTYALADVTHLRQIYEFLARKLEET 176

Query: 175 GRSDLATSCCNFLMDRAEL---DLLGWENVDIFSHS 207
           GR+         L+            W+ V   ++S
Sbjct: 177 GRARWVAEELETLLSPDTYVTQPQDAWKRVKTRTNS 212


>gi|260576346|ref|ZP_05844337.1| ribonuclease D [Rhodobacter sp. SW2]
 gi|259021417|gb|EEW24722.1| ribonuclease D [Rhodobacter sp. SW2]
          Length = 385

 Score =  231 bits (590), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT---VDIIRI 56
           M TI     D+   C AA+    + +DTE L       +LC++Q++    T   V +  I
Sbjct: 1   MQTITTTT-DLADFCEAAKREPYVTIDTEFLRERTYWSKLCLIQMALPGKTGRAVLVDPI 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              + +   L  +   +   K+FH  R D+ + F        P+F T++A+ +   Y  Q
Sbjct: 60  EGPEMSLEPLYDLFRHQATVKVFHAARQDLEIFFVEGNSFPEPLFDTQVAAMVC-GYGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +K++   N+ K  + +DWS   LS+ Q  YA +DV HL  +      ++ + GR
Sbjct: 119 VGYETLVKKIAKENLDKTSRFTDWSRRPLSEAQSDYALADVTHLRVVYESLAAQIAKSGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
                   + L D A         W+ V   + S
Sbjct: 179 QKWVEEELSILTDPATYTTHPEEAWQRVKTRTTS 212


>gi|158425285|ref|YP_001526577.1| ribonuclease D [Azorhizobium caulinodans ORS 571]
 gi|158332174|dbj|BAF89659.1| ribonuclease D [Azorhizobium caulinodans ORS 571]
          Length = 383

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 2/193 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   E    A       D + VDTE L       +LC++Q++  D  + I  +A G 
Sbjct: 1   MDPITSTEALAAACERLSRHDFVTVDTEFLRETTFWPKLCVIQVASVDEAIIIDALAEGL 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ +EK +K+FH GR DI ++++   +   PVF T++A+ +   Y +     
Sbjct: 61  DLAP-FFALMGNEKVKKVFHAGRQDIEIVWHLAEIIPHPVFDTQVAAMVL-GYGDSISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++ + G  I K+ + +DWS   LS  QL YA +DV HL  +  +  E L+  GR+D  
Sbjct: 119 QLVQRITGHAIDKSSRFTDWSRRPLSQAQLTYAVADVTHLRDVYKKLMEDLESRGRADWM 178

Query: 181 TSCCNFLMDRAEL 193
               N L   +  
Sbjct: 179 GEEMNILTSPSTY 191


>gi|254448397|ref|ZP_05061858.1| ribonuclease D [gamma proteobacterium HTCC5015]
 gi|198262010|gb|EDY86294.1| ribonuclease D [gamma proteobacterium HTCC5015]
          Length = 384

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 3/178 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
               + + +DTE L       +LC++Q++  D    I  +A    +   L  +L DE   
Sbjct: 20  LAGSEWLTLDTEFLREKTYYPQLCLIQIANHDLIACIDPLA--IDDLTPLYALLHDESIV 77

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D  +L+ +     +PVF T++A+ L   Y +Q G    ++++ G+ + K+Q 
Sbjct: 78  KVLHAAVQDQEILYQSSQQPPKPVFDTQVAASLL-GYGDQMGYAKLVEKICGVQLDKSQS 136

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
            +DWS   L+++Q+ YAA DV HL  +      +L+RLGRSD      + L +    D
Sbjct: 137 RTDWSRRPLNEKQIDYAADDVRHLREIYQHLKTELERLGRSDWLQKDFDDLANPQRYD 194


>gi|311279296|ref|YP_003941527.1| ribonuclease D [Enterobacter cloacae SCF1]
 gi|308748491|gb|ADO48243.1| ribonuclease D [Enterobacter cloacae SCF1]
          Length = 386

 Score =  231 bits (589), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + A C AAR   AIA+DTE +       +L ++Q+  GD  V I  ++    +  
Sbjct: 16  TQDDALKAACDAARGAPAIALDTEFVRTRTYYPQLGLIQMYDGDSVVLIDPLS--ITDWT 73

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L+D    K  H G  D+ V   TFGV   P+  T+I +          G    ++
Sbjct: 74  PFRDLLLDGAVTKYLHAGSEDLEVFLNTFGVLPEPLIDTQILAAFC-GRPMSWGFAAMVE 132

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  GI + K++  +DW A  L++ Q  YAA+DV +L  +  +   + +  G    A   C
Sbjct: 133 EYTGIALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMAETEASGWLPAALDEC 192

Query: 185 NFLMDRAE 192
             +  R  
Sbjct: 193 RLMQQRRR 200


>gi|260776343|ref|ZP_05885238.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607566|gb|EEX33831.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
          Length = 371

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 13/204 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I      +   CA AR  D + +DTE +       +L ++QL  G+    I        +
Sbjct: 5   IITRPDQLEKVCAQARNADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDP--TVIDD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V   +FG    P+  T++ +     +    G    
Sbjct: 63  MTAFVHLLKDTSVLKVLHACGEDLEVFNNSFGCLPYPMVDTQLMAAFL-GHGLSTGFASL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++  LG+ + K++  +DW A  L+D+QL YAA+DV +L  L  +  E++ + G  + A  
Sbjct: 122 VESYLGVELDKSESRTDWLARPLTDKQLDYAAADVHYLLPLYEKLLEEITQAGWWEAAQQ 181

Query: 183 CCNFL---------MDRAELDLLG 197
             + L          ++A LD+ G
Sbjct: 182 ESDLLATKRIKSLDPEKAYLDVKG 205


>gi|258541225|ref|YP_003186658.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632303|dbj|BAH98278.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635360|dbj|BAI01329.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638415|dbj|BAI04377.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256641469|dbj|BAI07424.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256644524|dbj|BAI10472.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256647579|dbj|BAI13520.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256650632|dbj|BAI16566.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653623|dbj|BAI19550.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 402

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 2/172 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             + VDTE +        LC+VQ+   +  V I  +A G    P L  + VD    K+FH
Sbjct: 32  SFVTVDTEFMREQTYWPELCLVQIGATNDVVLIDALADGIDLTP-LKNLFVDTAVLKVFH 90

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D+ +  + F     P+F T++A+ +   + +Q G    +  L G  I K+ + +DW
Sbjct: 91  AARQDLEIFLHLFDALPTPLFDTQVAAMVA-GFGDQVGYDSLVGSLTGHMIDKSHRFTDW 149

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           S   LS  QL YAA DV  L  +  +  +KL++  R D   +    L D A 
Sbjct: 150 SVRPLSPAQLTYAAGDVTWLRLVYERLVKKLEQEQRLDWVAAEMAELEDPAT 201


>gi|163803649|ref|ZP_02197513.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
 gi|159172559|gb|EDP57420.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
          Length = 372

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 4/194 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   CA AR  D + +DTE + +     +L ++QL  G     I        +
Sbjct: 5   IIKKNKDLEEVCALAREADVVMLDTEFVRIRTFYPQLGLIQLFDGKQLSLIDP--TELTD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             + V +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 63  MTSFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+ + G  +    
Sbjct: 122 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNQAGWWEAVQQ 181

Query: 183 CCNFLMDRAELDLL 196
             + L+ +   D+ 
Sbjct: 182 ESDLLVSKRIRDIN 195


>gi|86147639|ref|ZP_01065948.1| ribonuclease D [Vibrio sp. MED222]
 gi|85834550|gb|EAQ52699.1| ribonuclease D [Vibrio sp. MED222]
          Length = 397

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   C  AR  D + +DTE +       +L ++QL  G+    I  IA     
Sbjct: 30  IITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIA--LDE 87

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               VG+L D    K+ H    D+ V    FG    P+  T+I +     +    G    
Sbjct: 88  MTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-GHGLSTGFAAL 146

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + E +G+++ K++  +DW A  LS +QL YAA+DV +L  +  +  EK+   G  + A  
Sbjct: 147 VSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKILEKVMEAGWWEAAQQ 206

Query: 183 CCNFL---------MDRAELDLLG-WE 199
             +            D A LD+ G W+
Sbjct: 207 ESDLQVAKRIRKANPDNAYLDIKGAWQ 233


>gi|126697114|ref|YP_001092000.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301]
 gi|126544157|gb|ABO18399.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301]
          Length = 211

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 86/208 (41%), Positives = 123/208 (59%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
             I +   D+  +     +    +A+DTE +GL+  RDRLC+VQ+         I+I   
Sbjct: 6   KNIDLLYSDLTVDLYNLYKKSSYLAIDTEAMGLIHGRDRLCLVQICNEFKRTSCIKIELN 65

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             ++P+L  +L DEK  KIFHY RFD+A L     +  + +FCTKIAS+L RTYTN+HGL
Sbjct: 66  TSSSPHLKKLLEDEKITKIFHYARFDVAALKCNLEINTKNIFCTKIASKLARTYTNKHGL 125

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           KD + ELLGI + K+ QSSDW + +DL+ +QL YAA+DV +L     +    L+R  R +
Sbjct: 126 KDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMHKLKVILEREDRYE 185

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C   +   A+LD+L + N  IF H
Sbjct: 186 LAQKCFETVSVHADLDILKFSN--IFEH 211


>gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
 gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
          Length = 354

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   CA AR  D + +DTE + +     +L ++QL  G     I        +
Sbjct: 21  IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             + + +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 79  MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197

Query: 183 CCNFLMDR---------AELDLLG-WE 199
             + L+ +         A LD+ G W+
Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKGAWQ 224


>gi|84393455|ref|ZP_00992211.1| ribonuclease D [Vibrio splendidus 12B01]
 gi|84375883|gb|EAP92774.1| ribonuclease D [Vibrio splendidus 12B01]
          Length = 313

 Score =  230 bits (588), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 13/204 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   C  AR  D + +DTE +       +L ++QL  G+    I  IA     
Sbjct: 30  IITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIA--LDE 87

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               VG+L D    K+ H    D+ V    FG    P+  T+I +     +    G    
Sbjct: 88  MTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL-GHGLSTGFAAL 146

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + E +G+++ K++  +DW A  LS +QL YAA+DV +L  +  +  EK+   G  + A  
Sbjct: 147 VSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQQ 206

Query: 183 CCNFL---------MDRAELDLLG 197
             +            D A LD+ G
Sbjct: 207 ESDLQVAKRIRKANPDNAYLDIKG 230


>gi|153840116|ref|ZP_01992783.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
 gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
          Length = 341

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   CA AR  D + +DTE + +     +L ++QL  G     I        +
Sbjct: 21  IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             + + +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 79  MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197

Query: 183 CCNFLMDR---------AELDLLG-WE 199
             + L+ +         A LD+ G W+
Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKGAWQ 224


>gi|299133731|ref|ZP_07026925.1| ribonuclease D [Afipia sp. 1NLS2]
 gi|298591567|gb|EFI51768.1| ribonuclease D [Afipia sp. 1NLS2]
          Length = 382

 Score =  230 bits (587), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   E  + A CA       + VDTE L        LC+VQL+  D  V +  +A G
Sbjct: 1   MELITSTE-QLAAVCARLARHPFVTVDTEFLRETTYYPLLCVVQLASSDEAVVVDALAEG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ DEK  K+FH  R DI ++++  G+   PVF T++A+ +   Y +    
Sbjct: 60  IDLKP-FFDLMADEKVLKVFHAARQDIEIVWHLAGIVPHPVFDTQVAAMVL-GYGDSIAY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              +  + G  + K  + +DWS   L+ EQ  YA +DV HL  +       L++  R+D 
Sbjct: 118 DQLVGRITGHKLDKTHRFTDWSRRPLTKEQSAYALADVTHLRDVFTALDADLKKRKRADW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +   + L   +  +      WE +   
Sbjct: 178 VSEEMDVLTSPSTYNAPPERAWERLKTR 205


>gi|139437245|ref|ZP_01771405.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
           25986]
 gi|133776892|gb|EBA40712.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
           25986]
          Length = 377

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 3/190 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I  H+  +     AR  DAIAVDTE L       RLC+VQ++    +V +  +     + 
Sbjct: 3   ISTHQALLDFCQRAREFDAIAVDTEFLRERTFHPRLCLVQIATPAESVAVDPL--VIDDL 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  ++ DE   K+FH    D+ V+ +T GV  RP+F T++A+        Q      +
Sbjct: 61  SPLAELMADESVTKVFHACSQDMEVMLHTVGVLPRPIFDTQVAAAFL-GERQQISYGALV 119

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +   G+++ K +  +DWS   L+D+Q++YA  DV +L     +   +L+ LGR D     
Sbjct: 120 QTFCGVSLPKTESLTDWSRRPLTDKQIEYAIDDVKYLIVAYTEMMSRLRELGRVDWVLDE 179

Query: 184 CNFLMDRAEL 193
              L D +  
Sbjct: 180 LRPLADESHY 189


>gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
 gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329]
          Length = 388

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   CA AR  D + +DTE + +     +L ++QL  G     I        +
Sbjct: 21  IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             + + +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 79  MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197

Query: 183 CCNFLMDR---------AELDLLG-WE 199
             + L+ +         A LD+ G W+
Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKGAWQ 224


>gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
 gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
          Length = 372

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   CA AR  D + +DTE + +     +L ++QL  G     I        +
Sbjct: 21  IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             + + +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 79  MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197

Query: 183 CCNFLMDR---------AELDLLG-WE 199
             + L+ +         A LD+ G W+
Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKGAWQ 224


>gi|58698273|ref|ZP_00373191.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630014|ref|YP_002726805.1| Ribonuclease D [Wolbachia sp. wRi]
 gi|225677056|ref|ZP_03788062.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|58535197|gb|EAL59278.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225590902|gb|EEH12123.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591995|gb|ACN95014.1| Ribonuclease D [Wolbachia sp. wRi]
          Length = 392

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 10/201 (4%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            DI     A+    IAVDTE +        +L ++Q+S G+ +  I+     + +   + 
Sbjct: 10  EDICEGLIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIK 68

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +++++   K+FH  R DI  L   F     P+F T++A+     Y +  G    +++  
Sbjct: 69  KIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQ 128

Query: 128 GINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           GI + K   ++SDW    LS++QL YA +DVVHL+ L      KL+   R          
Sbjct: 129 GIALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMES 188

Query: 187 LMDRAEL-----DLLGWENVD 202
           ++D  +      D   W+ + 
Sbjct: 189 IVDINKYLHSPKD--AWKRIK 207


>gi|294677027|ref|YP_003577642.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
 gi|294475847|gb|ADE85235.1| ribonuclease D-2 [Rhodobacter capsulatus SB 1003]
          Length = 384

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 8/213 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIA 57
           M TI   +  +   C  A+    + VDTE L       +LC+VQ++    +G   ++   
Sbjct: 1   MQTITTTDA-LEQFCTRAKAAPYVTVDTEFLRERTYWSKLCLVQMALPGKEGEAVLVDPL 59

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
               +   L  +   +   K+FH  R D+ + F   GV   P+F T++A+ +   +  Q 
Sbjct: 60  VEGLSLEPLYDLFRHQATVKVFHAARQDLEIFFTEAGVFPLPLFDTQVAAMVC-GFGEQV 118

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           G +  +K++   ++ K  + +DWS   L+D Q  YA +DV HL  +    +++L++ GR 
Sbjct: 119 GYETLVKKIAKQSLDKTSRFTDWSRRPLTDAQKAYALADVTHLRVIYEFLSKELRKSGRE 178

Query: 178 DLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
                    L++           WE V   ++S
Sbjct: 179 KWVEEEEAILLNPETYITRPEDAWERVKTRTNS 211


>gi|114768885|ref|ZP_01446511.1| ribonuclease D [alpha proteobacterium HTCC2255]
 gi|114549802|gb|EAU52683.1| ribonuclease D [alpha proteobacterium HTCC2255]
          Length = 386

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 13/216 (6%)

Query: 1   MTTIRVHEG--DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDII 54
           M  I   +   D   +C+A   + + +DTE L       +LC+VQ++      D  V I 
Sbjct: 1   MIIITKTQELIDFCKKCSA--YEYVTLDTEFLRERTYYSKLCLVQMAHPGNTEDSAVLID 58

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
            ++      P L  +  +    K+FH  R D+ + F    +   P F T++A+ +   + 
Sbjct: 59  PLSPDLSLDP-LYELFKNPNVVKVFHAARQDLEIFFIDKKIIPFPFFDTQVAAMVC-GFG 116

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            Q G +  ++ +    + K+ + +DWSA  LS++Q+ YA  DV +L  +    + K++  
Sbjct: 117 EQVGYEKLVRSICNEGLDKSSRFTDWSARPLSNKQMHYAIGDVTYLREIYEFLSNKIKNN 176

Query: 175 GRSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
            R          LMD     +     W  V   S S
Sbjct: 177 KRQAWVEEELKILMDPETYTIDPKYAWRRVKTRSSS 212


>gi|209885458|ref|YP_002289314.1| ribonuclease D [Oligotropha carboxidovorans OM5]
 gi|209873654|gb|ACI93450.1| ribonuclease D [Oligotropha carboxidovorans OM5]
          Length = 386

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   E  + A C        + VDTE L        LC+VQL+  D  V +  +A G
Sbjct: 1   MELISTTE-QLKAVCERLAQHPFVTVDTEFLRETTYYPLLCVVQLASTDEAVVVDALAEG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ +EK  K+FH  R DI ++++   +   PVF T++A+ +   Y +    
Sbjct: 60  IDLKP-FFDLMANEKVLKVFHAARQDIEIVWHLANIVPHPVFDTQVAAMVL-GYGDSIAY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              +  + G  + K  + +DWS   L+ EQ  YA +DV HL  + L     L++  R+D 
Sbjct: 118 DQLVGRITGHKLDKTHRFTDWSRRPLTQEQTTYALADVTHLRDVFLVLDADLKKRNRADW 177

Query: 180 ATSCCNFLMDRAELDL---LGWENVDIF 204
            +     L   A         WE +   
Sbjct: 178 VSEEMQILTSPATYHTPPERAWERLKTR 205


>gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
 gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
          Length = 325

 Score =  229 bits (586), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   CA AR  D + +DTE + +     +L ++QL  G     I        +
Sbjct: 21  IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             + + +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 79  MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197

Query: 183 CCNFLMDR---------AELDLLG-WE 199
             + L+ +         A LD+ G W+
Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKGAWQ 224


>gi|261253420|ref|ZP_05945993.1| ribonuclease D [Vibrio orientalis CIP 102891]
 gi|260936811|gb|EEX92800.1| ribonuclease D [Vibrio orientalis CIP 102891]
          Length = 371

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 4/184 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I      +   C +AR VD + +DTE +       +L ++QL  G+    I       ++
Sbjct: 5   IITQSSQLEEVCQSARNVDVVMLDTEFVRTRTYYPQLGLIQLFDGEKLSLIDP--TVIED 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V   +FG    P+  T++ +     +    G    
Sbjct: 63  MTAFVELLKDTSVLKVLHACGEDLEVFHNSFGCLPYPMVDTQLMAAFL-GHGLSTGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++  LG+ + K++  +DW A  LSD+QL+YAA+DV +L  L  Q  EK+ + G  + A  
Sbjct: 122 VENYLGVELDKSESRTDWLARPLSDKQLEYAAADVYYLQPLYEQLFEKITQAGWWEAAQQ 181

Query: 183 CCNF 186
             + 
Sbjct: 182 ESDL 185


>gi|262276702|ref|ZP_06054497.1| ribonuclease D [alpha proteobacterium HIMB114]
 gi|262225133|gb|EEY75590.1| ribonuclease D [alpha proteobacterium HIMB114]
          Length = 204

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 120/198 (60%), Gaps = 3/198 (1%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+  + + +   +IA+D E  GL P  D+L ++Q+  G   V  ++   G+ +AP L  
Sbjct: 10  NDLEDDSSLKNASSIAIDGEFSGLNPLTDKLHLLQICDGSNFVHFVKF-DGEYDAPKLKK 68

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L +   +KIFH+GR D+  +     + V+ ++ TKIAS++ R +T+ HGLKD  ++L+ 
Sbjct: 69  VLENNSIKKIFHFGRADLGFIKKHLNINVKNIYDTKIASKICRKFTSSHGLKDLSRDLIN 128

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           IN+SK  Q+SDW   + SD+Q++YAA+DV+HLH ++ +  + L R  + +LA  C  FL 
Sbjct: 129 INLSKEHQTSDWGKKEYSDDQIKYAANDVLHLHKIKEELDKILIRENKVELAEKCFQFLE 188

Query: 189 DRAELDLLGWENVDIFSH 206
            R +LDL G    DIF H
Sbjct: 189 TRTDLDLCGLG--DIFEH 204


>gi|170770112|ref|ZP_02904565.1| ribonuclease D [Escherichia albertii TW07627]
 gi|170121069|gb|EDS90000.1| ribonuclease D [Escherichia albertii TW07627]
          Length = 375

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 7/200 (3%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVRYLLPITTKLMAETEASGWLPAALDEC 183

Query: 185 NFLMDRAELDLL---GWENV 201
             +  R +  L     W ++
Sbjct: 184 RLMQIRRQEVLAPEEAWRDI 203


>gi|332557401|ref|ZP_08411723.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
 gi|332275113|gb|EGJ20428.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
          Length = 385

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M TI   E  + A C AA+    + +DTE L       +LC++Q++     G+  V +  
Sbjct: 1   MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGE-AVLVDP 58

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           I     +   L  +   E   K+FH  R D+ + F        P+F T++A+ +   +  
Sbjct: 59  IEGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  +K++    + K  + +DWS   LSD Q  YA +DV HL  +    + ++++ G
Sbjct: 118 QVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNG 177

Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           R          L D     +     W  +   + S
Sbjct: 178 RQKWVEEELAILTDPETYTVRPEEAWLRIKTRTTS 212


>gi|221638369|ref|YP_002524631.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
 gi|221159150|gb|ACM00130.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
          Length = 385

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M TI   E  + A C AA+    + +DTE L       +LC++Q++     G+  V +  
Sbjct: 1   MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGE-AVLVDP 58

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           I     +   L  +   E   K+FH  R D+ + F        P+F T++A+ +   +  
Sbjct: 59  IEGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  +K++    + K  + +DWS   LSD Q  YA +DV HL  +    + ++++ G
Sbjct: 118 QVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNG 177

Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           R          L D     +     W  +   + S
Sbjct: 178 RQKWVEEELAILTDPETYTVRPEEAWLRIKTRTTS 212


>gi|91228923|ref|ZP_01262822.1| ribonuclease D [Vibrio alginolyticus 12G01]
 gi|91187531|gb|EAS73864.1| ribonuclease D [Vibrio alginolyticus 12G01]
          Length = 277

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 13/204 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   C  AR  D + +DTE + +     +L ++QL  G+    I        +
Sbjct: 18  IITKNKDLEEVCTHAREADVVMLDTEFVRIRTFYPQLGLIQLFDGNRLSLIDP--TELTD 75

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 76  MTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFASL 134

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+ + G  +    
Sbjct: 135 VEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAGWWEAVQQ 194

Query: 183 CCNFLMDR---------AELDLLG 197
             + L+ +         A LD+ G
Sbjct: 195 ESDLLVSKRIRVTNEENAYLDIKG 218


>gi|77462516|ref|YP_352020.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|126461450|ref|YP_001042564.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
 gi|77386934|gb|ABA78119.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|126103114|gb|ABN75792.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
          Length = 385

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIR 55
           M TI   E  + A C AA+    + +DTE L       +LC++Q++     G+  V +  
Sbjct: 1   MQTITTTEA-LAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGE-AVLVDP 58

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           I     +   L  +   E   K+FH  R D+ + F        P+F T++A+ +   +  
Sbjct: 59  IEGPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  +K++    + K  + +DWS   LSD Q  YA +DV HL  +    + ++++ G
Sbjct: 118 QVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNG 177

Query: 176 RSDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           R          L D     +     W  +   + S
Sbjct: 178 RQKWVEEELAILTDPETYTVRPEEAWLRIKTRTTS 212


>gi|323175119|gb|EFZ60733.1| ribonuclease D [Escherichia coli LT-68]
          Length = 375

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|260868323|ref|YP_003234725.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
 gi|257764679|dbj|BAI36174.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
          Length = 375

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|260855663|ref|YP_003229554.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
 gi|257754312|dbj|BAI25814.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
          Length = 375

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|99034557|ref|ZP_01314528.1| hypothetical protein Wendoof_01000660 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 409

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%)

Query: 13  AECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            E  A+    IAVDTE +        +L ++Q+S G+ +  I+     + +   +  +++
Sbjct: 31  EELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDTLVPEIDLSFIKKIML 89

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           ++   K+FH  R DI  L   F     P+F T++A+     Y +  G    +++  GI +
Sbjct: 90  NQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIAL 149

Query: 132 SK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            K   ++SDW    LS++QL YA +DVVHL+ L      KL+   R          ++D 
Sbjct: 150 DKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMESIVDI 209

Query: 191 AEL-----DLLGWENVD 202
            +      D   W+ + 
Sbjct: 210 NKYLHSPKD--AWKRIK 224


>gi|157161268|ref|YP_001458586.1| ribonuclease D [Escherichia coli HS]
 gi|188495947|ref|ZP_03003217.1| ribonuclease D [Escherichia coli 53638]
 gi|194439630|ref|ZP_03071702.1| ribonuclease D [Escherichia coli 101-1]
 gi|254161863|ref|YP_003044971.1| ribonuclease D [Escherichia coli B str. REL606]
 gi|157066948|gb|ABV06203.1| ribonuclease D [Escherichia coli HS]
 gi|188491146|gb|EDU66249.1| ribonuclease D [Escherichia coli 53638]
 gi|194421451|gb|EDX37466.1| ribonuclease D [Escherichia coli 101-1]
 gi|242377525|emb|CAQ32279.1| RNase D [Escherichia coli BL21(DE3)]
 gi|253973764|gb|ACT39435.1| ribonuclease D [Escherichia coli B str. REL606]
 gi|253977958|gb|ACT43628.1| ribonuclease D [Escherichia coli BL21(DE3)]
          Length = 375

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|15831767|ref|NP_310540.1| ribonuclease D [Escherichia coli O157:H7 str. Sakai]
 gi|157156075|ref|YP_001463104.1| ribonuclease D [Escherichia coli E24377A]
 gi|187776027|ref|ZP_02799888.2| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
 gi|188024852|ref|ZP_02774388.2| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
 gi|189010430|ref|ZP_02807242.2| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
 gi|189402540|ref|ZP_02783120.2| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
 gi|189403490|ref|ZP_02795783.2| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
 gi|189404421|ref|ZP_02789258.2| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
 gi|189405084|ref|ZP_02813223.2| ribonuclease D [Escherichia coli O157:H7 str. EC869]
 gi|189406051|ref|ZP_02826040.2| ribonuclease D [Escherichia coli O157:H7 str. EC508]
 gi|191168835|ref|ZP_03030609.1| ribonuclease D [Escherichia coli B7A]
 gi|193066361|ref|ZP_03047410.1| ribonuclease D [Escherichia coli E22]
 gi|193071290|ref|ZP_03052209.1| ribonuclease D [Escherichia coli E110019]
 gi|194430003|ref|ZP_03062510.1| ribonuclease D [Escherichia coli B171]
 gi|208810493|ref|ZP_03252369.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
 gi|208816683|ref|ZP_03257803.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
 gi|208818758|ref|ZP_03259078.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
 gi|209396542|ref|YP_002270881.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
 gi|209919169|ref|YP_002293253.1| ribonuclease D [Escherichia coli SE11]
 gi|217328853|ref|ZP_03444934.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
 gi|218554376|ref|YP_002387289.1| ribonuclease D [Escherichia coli IAI1]
 gi|218695366|ref|YP_002403033.1| ribonuclease D [Escherichia coli 55989]
 gi|218705302|ref|YP_002412821.1| ribonuclease D [Escherichia coli UMN026]
 gi|254793426|ref|YP_003078263.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
 gi|260844148|ref|YP_003221926.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
 gi|291282984|ref|YP_003499802.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615]
 gi|293446176|ref|ZP_06662598.1| ribonuclease D [Escherichia coli B088]
 gi|332279045|ref|ZP_08391458.1| ribonuclease D [Shigella sp. D9]
 gi|13361980|dbj|BAB35936.1| RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
           Sakai]
 gi|157078105|gb|ABV17813.1| ribonuclease D [Escherichia coli E24377A]
 gi|187769404|gb|EDU33248.1| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
 gi|188016291|gb|EDU54413.1| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
 gi|189000217|gb|EDU69203.1| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
 gi|189355025|gb|EDU73444.1| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
 gi|189360343|gb|EDU78762.1| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
 gi|189365729|gb|EDU84145.1| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
 gi|189371954|gb|EDU90370.1| ribonuclease D [Escherichia coli O157:H7 str. EC869]
 gi|189376734|gb|EDU95150.1| ribonuclease D [Escherichia coli O157:H7 str. EC508]
 gi|190901115|gb|EDV60890.1| ribonuclease D [Escherichia coli B7A]
 gi|192926009|gb|EDV80654.1| ribonuclease D [Escherichia coli E22]
 gi|192955385|gb|EDV85869.1| ribonuclease D [Escherichia coli E110019]
 gi|194411930|gb|EDX28245.1| ribonuclease D [Escherichia coli B171]
 gi|208725009|gb|EDZ74716.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
 gi|208731026|gb|EDZ79715.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
 gi|208738881|gb|EDZ86563.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
 gi|209157942|gb|ACI35375.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
 gi|209768038|gb|ACI82331.1| RNase D [Escherichia coli]
 gi|209768040|gb|ACI82332.1| RNase D [Escherichia coli]
 gi|209768042|gb|ACI82333.1| RNase D [Escherichia coli]
 gi|209768044|gb|ACI82334.1| RNase D [Escherichia coli]
 gi|209768046|gb|ACI82335.1| RNase D [Escherichia coli]
 gi|209912428|dbj|BAG77502.1| ribonuclease D [Escherichia coli SE11]
 gi|217318200|gb|EEC26627.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
 gi|218352098|emb|CAU97835.1| ribonuclease D [Escherichia coli 55989]
 gi|218361144|emb|CAQ98727.1| ribonuclease D [Escherichia coli IAI1]
 gi|218432399|emb|CAR13290.1| ribonuclease D [Escherichia coli UMN026]
 gi|254592826|gb|ACT72187.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
 gi|257759295|dbj|BAI30792.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
 gi|290762857|gb|ADD56818.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615]
 gi|291323006|gb|EFE62434.1| ribonuclease D [Escherichia coli B088]
 gi|332101397|gb|EGJ04743.1| ribonuclease D [Shigella sp. D9]
          Length = 375

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|281178870|dbj|BAI55200.1| ribonuclease D [Escherichia coli SE15]
          Length = 375

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|26248062|ref|NP_754102.1| ribonuclease D [Escherichia coli CFT073]
 gi|91211019|ref|YP_541005.1| ribonuclease D [Escherichia coli UTI89]
 gi|215487015|ref|YP_002329446.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69]
 gi|218558666|ref|YP_002391579.1| ribonuclease D [Escherichia coli S88]
 gi|218689740|ref|YP_002397952.1| ribonuclease D [Escherichia coli ED1a]
 gi|26108465|gb|AAN80667.1|AE016761_242 Ribonuclease D [Escherichia coli CFT073]
 gi|91072593|gb|ABE07474.1| ribonuclease D [Escherichia coli UTI89]
 gi|215265087|emb|CAS09475.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69]
 gi|218365435|emb|CAR03162.1| ribonuclease D [Escherichia coli S88]
 gi|218427304|emb|CAR08103.1| ribonuclease D [Escherichia coli ED1a]
 gi|294489955|gb|ADE88711.1| ribonuclease D [Escherichia coli IHE3034]
          Length = 375

 Score =  228 bits (582), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|331683306|ref|ZP_08383907.1| ribonuclease D [Escherichia coli H299]
 gi|331079521|gb|EGI50718.1| ribonuclease D [Escherichia coli H299]
          Length = 371

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 7/200 (3%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAELDLL---GWENV 201
             +  R +  +     W ++
Sbjct: 180 RLMQMRRQEIVAPEDAWRDI 199


>gi|187733914|ref|YP_001880596.1| ribonuclease D [Shigella boydii CDC 3083-94]
 gi|187430906|gb|ACD10180.1| ribonuclease D [Shigella boydii CDC 3083-94]
          Length = 375

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I S          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|300904667|ref|ZP_07122502.1| ribonuclease D [Escherichia coli MS 84-1]
 gi|301305900|ref|ZP_07211983.1| ribonuclease D [Escherichia coli MS 124-1]
 gi|300403417|gb|EFJ86955.1| ribonuclease D [Escherichia coli MS 84-1]
 gi|300838826|gb|EFK66586.1| ribonuclease D [Escherichia coli MS 124-1]
 gi|315257385|gb|EFU37353.1| ribonuclease D [Escherichia coli MS 85-1]
 gi|323180583|gb|EFZ66128.1| ribonuclease D [Escherichia coli 1180]
          Length = 371

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|82543793|ref|YP_407740.1| ribonuclease D [Shigella boydii Sb227]
 gi|81245204|gb|ABB65912.1| RNase D [Shigella boydii Sb227]
          Length = 375

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I S          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|42520085|ref|NP_966000.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409822|gb|AAS13934.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 392

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%)

Query: 13  AECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            E  A+    IAVDTE +        +L ++Q+S G+ +  I+     + +   +  +++
Sbjct: 14  EELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKKIML 72

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           ++   K+FH  R DI  L   F     P+F T++A+     Y +  G    +++  GI +
Sbjct: 73  NQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIAL 132

Query: 132 SK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            K   ++SDW    LS++QL YA +DVVHL+ L      KL+   R          ++D 
Sbjct: 133 DKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMESIVDI 192

Query: 191 AEL-----DLLGWENVD 202
            +      D   W+ + 
Sbjct: 193 NKYLHSPKD--AWKRIK 207


>gi|170680016|ref|YP_001743442.1| ribonuclease D [Escherichia coli SMS-3-5]
 gi|218699628|ref|YP_002407257.1| ribonuclease D [Escherichia coli IAI39]
 gi|170517734|gb|ACB15912.1| ribonuclease D [Escherichia coli SMS-3-5]
 gi|218369614|emb|CAR17383.1| ribonuclease D [Escherichia coli IAI39]
          Length = 375

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|323186982|gb|EFZ72300.1| ribonuclease D [Escherichia coli RN587/1]
          Length = 371

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|323152955|gb|EFZ39224.1| ribonuclease D [Escherichia coli EPECa14]
          Length = 371

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|320194484|gb|EFW69115.1| Ribonuclease D [Escherichia coli WV_060327]
          Length = 375

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +
Sbjct: 5   LITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    
Sbjct: 63  WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASM 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A  
Sbjct: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181

Query: 183 CCNFLMDRAE 192
            C  +  R +
Sbjct: 182 ECRLMQMRRQ 191


>gi|16129758|ref|NP_416318.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655]
 gi|89108643|ref|AP_002423.1| ribonuclease D [Escherichia coli str. K-12 substr. W3110]
 gi|170081460|ref|YP_001730780.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B]
 gi|238901018|ref|YP_002926814.1| ribonuclease D [Escherichia coli BW2952]
 gi|301019362|ref|ZP_07183546.1| ribonuclease D [Escherichia coli MS 196-1]
 gi|133152|sp|P09155|RND_ECOLI RecName: Full=Ribonuclease D; Short=RNase D
 gi|75765643|pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An
           Exoribonuclease Involved In Structured Rna Processing
 gi|581215|emb|CAA30098.1| unnamed protein product [Escherichia coli]
 gi|1736427|dbj|BAA15599.1| ribonuclease D [Escherichia coli str. K12 substr. W3110]
 gi|1788105|gb|AAC74874.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655]
 gi|169889295|gb|ACB03002.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B]
 gi|238863466|gb|ACR65464.1| ribonuclease D [Escherichia coli BW2952]
 gi|299882254|gb|EFI90465.1| ribonuclease D [Escherichia coli MS 196-1]
 gi|309702026|emb|CBJ01340.1| ribonuclease D [Escherichia coli ETEC H10407]
 gi|315136445|dbj|BAJ43604.1| ribonuclease D [Escherichia coli DH1]
 gi|226093|prf||1410308A ribonuclease D
          Length = 375

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|253773243|ref|YP_003036074.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|297516497|ref|ZP_06934883.1| ribonuclease D [Escherichia coli OP50]
 gi|300927881|ref|ZP_07143442.1| ribonuclease D [Escherichia coli MS 187-1]
 gi|312969840|ref|ZP_07784023.1| ribonuclease D [Escherichia coli 1827-70]
 gi|253324287|gb|ACT28889.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|300464070|gb|EFK27563.1| ribonuclease D [Escherichia coli MS 187-1]
 gi|310338125|gb|EFQ03214.1| ribonuclease D [Escherichia coli 1827-70]
 gi|323961858|gb|EGB57457.1| ribonuclease D [Escherichia coli H489]
 gi|323972689|gb|EGB67892.1| ribonuclease D [Escherichia coli TA007]
          Length = 371

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|191171723|ref|ZP_03033270.1| ribonuclease D [Escherichia coli F11]
 gi|190908053|gb|EDV67645.1| ribonuclease D [Escherichia coli F11]
 gi|284921723|emb|CBG34795.1| ribonuclease D [Escherichia coli 042]
          Length = 375

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|195937492|ref|ZP_03082874.1| ribonuclease D [Escherichia coli O157:H7 str. EC4024]
 gi|256018008|ref|ZP_05431873.1| ribonuclease D [Shigella sp. D9]
 gi|261227700|ref|ZP_05941981.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258135|ref|ZP_05950668.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK966]
 gi|293405300|ref|ZP_06649292.1| ribonuclease D [Escherichia coli FVEC1412]
 gi|298380942|ref|ZP_06990541.1| ribonuclease D [Escherichia coli FVEC1302]
 gi|300816311|ref|ZP_07096533.1| ribonuclease D [Escherichia coli MS 107-1]
 gi|300823140|ref|ZP_07103273.1| ribonuclease D [Escherichia coli MS 119-7]
 gi|300899043|ref|ZP_07117330.1| ribonuclease D [Escherichia coli MS 198-1]
 gi|300917626|ref|ZP_07134277.1| ribonuclease D [Escherichia coli MS 115-1]
 gi|300924870|ref|ZP_07140803.1| ribonuclease D [Escherichia coli MS 182-1]
 gi|307314118|ref|ZP_07593730.1| ribonuclease D [Escherichia coli W]
 gi|309794180|ref|ZP_07688604.1| ribonuclease D [Escherichia coli MS 145-7]
 gi|331663292|ref|ZP_08364202.1| ribonuclease D [Escherichia coli TA143]
 gi|331668492|ref|ZP_08369340.1| ribonuclease D [Escherichia coli TA271]
 gi|331673338|ref|ZP_08374106.1| ribonuclease D [Escherichia coli TA280]
 gi|331677680|ref|ZP_08378355.1| ribonuclease D [Escherichia coli H591]
 gi|291427508|gb|EFF00535.1| ribonuclease D [Escherichia coli FVEC1412]
 gi|298278384|gb|EFI19898.1| ribonuclease D [Escherichia coli FVEC1302]
 gi|300357343|gb|EFJ73213.1| ribonuclease D [Escherichia coli MS 198-1]
 gi|300415143|gb|EFJ98453.1| ribonuclease D [Escherichia coli MS 115-1]
 gi|300418949|gb|EFK02260.1| ribonuclease D [Escherichia coli MS 182-1]
 gi|300524294|gb|EFK45363.1| ribonuclease D [Escherichia coli MS 119-7]
 gi|300531001|gb|EFK52063.1| ribonuclease D [Escherichia coli MS 107-1]
 gi|306906256|gb|EFN36773.1| ribonuclease D [Escherichia coli W]
 gi|308122085|gb|EFO59347.1| ribonuclease D [Escherichia coli MS 145-7]
 gi|315061107|gb|ADT75434.1| ribonuclease D [Escherichia coli W]
 gi|320188500|gb|EFW63162.1| Ribonuclease D [Escherichia coli O157:H7 str. EC1212]
 gi|320197983|gb|EFW72591.1| Ribonuclease D [Escherichia coli EC4100B]
 gi|320641655|gb|EFX11043.1| ribonuclease D [Escherichia coli O157:H7 str. G5101]
 gi|320647014|gb|EFX15847.1| ribonuclease D [Escherichia coli O157:H- str. 493-89]
 gi|320652296|gb|EFX20594.1| ribonuclease D [Escherichia coli O157:H- str. H 2687]
 gi|320657898|gb|EFX25660.1| ribonuclease D [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658471|gb|EFX26165.1| ribonuclease D [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668369|gb|EFX35196.1| ribonuclease D [Escherichia coli O157:H7 str. LSU-61]
 gi|323158715|gb|EFZ44729.1| ribonuclease D [Escherichia coli E128010]
 gi|323186449|gb|EFZ71797.1| ribonuclease D [Escherichia coli 1357]
 gi|323378318|gb|ADX50586.1| ribonuclease D [Escherichia coli KO11]
 gi|323948311|gb|EGB44299.1| ribonuclease D [Escherichia coli H120]
 gi|324018061|gb|EGB87280.1| ribonuclease D [Escherichia coli MS 117-3]
 gi|324118864|gb|EGC12753.1| ribonuclease D [Escherichia coli E1167]
 gi|326342179|gb|EGD65960.1| Ribonuclease D [Escherichia coli O157:H7 str. 1044]
 gi|326343729|gb|EGD67491.1| Ribonuclease D [Escherichia coli O157:H7 str. 1125]
 gi|331059091|gb|EGI31068.1| ribonuclease D [Escherichia coli TA143]
 gi|331063686|gb|EGI35597.1| ribonuclease D [Escherichia coli TA271]
 gi|331069536|gb|EGI40923.1| ribonuclease D [Escherichia coli TA280]
 gi|331074140|gb|EGI45460.1| ribonuclease D [Escherichia coli H591]
          Length = 371

 Score =  227 bits (581), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|148978262|ref|ZP_01814780.1| ribonuclease D [Vibrionales bacterium SWAT-3]
 gi|145962563|gb|EDK27840.1| ribonuclease D [Vibrionales bacterium SWAT-3]
          Length = 372

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   C  AR  D + +DTE +       +L ++QL  G+    I  IA     
Sbjct: 5   IITQLKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIA--LDE 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               VG+L D    K+ H    D+ V    F     P+  T+I +     +    G    
Sbjct: 63  MTPFVGLLKDASVLKVLHACGEDLEVFQNAFDCTPTPMVDTQIMAAFL-GHGLSTGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + E +G+++ K++  +DW A  LS +QL YAA+DV +L  +  +  EK+   G  + A  
Sbjct: 122 VSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQQ 181

Query: 183 CCNFL---------MDRAELDLLG-WE 199
             +            D A LD+ G W+
Sbjct: 182 ESDLQVARRIRKVNPDTAYLDIKGAWQ 208


>gi|222825102|dbj|BAH22259.1| putative ribonuclease D [Wolbachia endosymbiont of Cadra cautella]
          Length = 394

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 3/182 (1%)

Query: 14  ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E   +    IA+DTE +        +L ++Q+S G+ +  I+     + +   +  M+++
Sbjct: 15  ELMEKDPKFIAIDTEFIRNNLTYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIKKMMLN 73

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           +   K+FH  R DI  L   F     P+F T++A+     Y +  G    +++  GI + 
Sbjct: 74  QGIIKVFHSCRQDIESLLTVFKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIALD 133

Query: 133 K-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   ++SDW    LS++QL YA +DVV+L+ L      KL+   R          L+D  
Sbjct: 134 KIKAKNSDWLRRPLSEDQLDYAINDVVYLYDLYQILCNKLEESNRMSWFQEEMELLVDIN 193

Query: 192 EL 193
           + 
Sbjct: 194 KY 195


>gi|91762366|ref|ZP_01264331.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718168|gb|EAS84818.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002]
          Length = 203

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 125/204 (61%), Gaps = 4/204 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            I++H  D+P +      + IAVD E +GL  +RD LC++Q+S G+    II++   + +
Sbjct: 4   DIKLHTSDLPEDLDLG--NIIAVDGEFMGLNVKRDPLCLIQISTGNSDAHIIQLDREKYD 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L DE   KIFHYGR D+A + +        +  TKIAS+L R+Y++ H LK  
Sbjct: 62  APNLNKVLSDESITKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +KE + +++SK  QSSD+   +LS  QL+Y A+DV++LH +  +  + L R  R DL  S
Sbjct: 122 IKEFMNVDVSKQFQSSDFGG-ELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKS 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL  R +LDL  +++ DI+SH
Sbjct: 181 CLAFLKTRVDLDLALFKD-DIWSH 203


>gi|260366009|ref|ZP_05778494.1| ribonuclease D [Vibrio parahaemolyticus K5030]
 gi|308111259|gb|EFO48799.1| ribonuclease D [Vibrio parahaemolyticus K5030]
          Length = 292

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 13/204 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   CA AR  D + +DTE + +     +L ++QL  G     I        +
Sbjct: 21  IITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLIQLFDGKHLSLIDP--TELTD 78

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             + + +L D    K+ H    D+ V    FG    P+  T++ +     +    G    
Sbjct: 79  MTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL-GHGLSTGFATL 137

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E LG+ + K++  +DW A  L+ +QL YAA+DV +L  L  +  +K+   G  +    
Sbjct: 138 VEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQ 197

Query: 183 CCNFLMDR---------AELDLLG 197
             + L+ +         A LD+ G
Sbjct: 198 ESDLLVSKRIRETNEENAYLDIKG 221


>gi|82776970|ref|YP_403319.1| ribonuclease D [Shigella dysenteriae Sd197]
 gi|81241118|gb|ABB61828.1| RNase D [Shigella dysenteriae Sd197]
          Length = 375

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|320183816|gb|EFW58649.1| Ribonuclease D [Shigella flexneri CDC 796-83]
 gi|332096395|gb|EGJ01392.1| ribonuclease D [Shigella boydii 3594-74]
          Length = 371

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I S          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|15802217|ref|NP_288240.1| ribonuclease D [Escherichia coli O157:H7 EDL933]
 gi|12515844|gb|AAG56793.1|AE005403_4 RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
           EDL933]
          Length = 375

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 5/190 (2%)

Query: 4   IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +
Sbjct: 6   ITTXDA-LASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    
Sbjct: 63  WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASM 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A  
Sbjct: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181

Query: 183 CCNFLMDRAE 192
            C  +  R +
Sbjct: 182 ECRLMQMRRQ 191


>gi|117623964|ref|YP_852877.1| ribonuclease D [Escherichia coli APEC O1]
 gi|227885769|ref|ZP_04003574.1| ribonuclease D [Escherichia coli 83972]
 gi|237705754|ref|ZP_04536235.1| ribonuclease D [Escherichia sp. 3_2_53FAA]
 gi|300994259|ref|ZP_07180813.1| ribonuclease D [Escherichia coli MS 45-1]
 gi|301050852|ref|ZP_07197705.1| ribonuclease D [Escherichia coli MS 185-1]
 gi|306814949|ref|ZP_07449105.1| ribonuclease D [Escherichia coli NC101]
 gi|312967002|ref|ZP_07781220.1| ribonuclease D [Escherichia coli 2362-75]
 gi|331657844|ref|ZP_08358806.1| ribonuclease D [Escherichia coli TA206]
 gi|115513088|gb|ABJ01163.1| Ribonuclease D [Escherichia coli APEC O1]
 gi|222033551|emb|CAP76292.1| ribonuclease D [Escherichia coli LF82]
 gi|226900511|gb|EEH86770.1| ribonuclease D [Escherichia sp. 3_2_53FAA]
 gi|227837342|gb|EEJ47808.1| ribonuclease D [Escherichia coli 83972]
 gi|300297490|gb|EFJ53875.1| ribonuclease D [Escherichia coli MS 185-1]
 gi|300406325|gb|EFJ89863.1| ribonuclease D [Escherichia coli MS 45-1]
 gi|305851597|gb|EFM52050.1| ribonuclease D [Escherichia coli NC101]
 gi|307553822|gb|ADN46597.1| ribonuclease D [Escherichia coli ABU 83972]
 gi|307626717|gb|ADN71021.1| ribonuclease D [Escherichia coli UM146]
 gi|312288466|gb|EFR16368.1| ribonuclease D [Escherichia coli 2362-75]
 gi|312946400|gb|ADR27227.1| ribonuclease D [Escherichia coli O83:H1 str. NRG 857C]
 gi|315286519|gb|EFU45954.1| ribonuclease D [Escherichia coli MS 110-3]
 gi|315290392|gb|EFU49767.1| ribonuclease D [Escherichia coli MS 153-1]
 gi|315299924|gb|EFU59162.1| ribonuclease D [Escherichia coli MS 16-3]
 gi|323952305|gb|EGB48178.1| ribonuclease D [Escherichia coli H252]
 gi|323956433|gb|EGB52175.1| ribonuclease D [Escherichia coli H263]
 gi|323978014|gb|EGB73100.1| ribonuclease D [Escherichia coli TW10509]
 gi|324007181|gb|EGB76400.1| ribonuclease D [Escherichia coli MS 57-2]
 gi|331056092|gb|EGI28101.1| ribonuclease D [Escherichia coli TA206]
          Length = 371

 Score =  227 bits (580), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|300938850|ref|ZP_07153558.1| ribonuclease D [Escherichia coli MS 21-1]
 gi|300456240|gb|EFK19733.1| ribonuclease D [Escherichia coli MS 21-1]
          Length = 371

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|194434924|ref|ZP_03067168.1| ribonuclease D [Shigella dysenteriae 1012]
 gi|194416812|gb|EDX32937.1| ribonuclease D [Shigella dysenteriae 1012]
          Length = 375

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKSILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|37679238|ref|NP_933847.1| ribonuclease D [Vibrio vulnificus YJ016]
 gi|37197981|dbj|BAC93818.1| ribonuclease D [Vibrio vulnificus YJ016]
          Length = 390

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 4/184 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   C+ AR  D + +DTE +       +L ++QL  GD    I        +
Sbjct: 24  IITENQDLARVCSKAREADVVMLDTEFVRTRTYYPQLGLIQLFDGDSLSLIDP--TVLTD 81

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L D    K+ H    D+ V    FG    P+  T+I +     +    G    
Sbjct: 82  MSAFTELLNDASVMKVLHACGEDLEVFHNAFGAMPVPMVDTQIMAAFL-GHGLSTGFAAL 140

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  L     EK+   G    A  
Sbjct: 141 VEQYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMAAGWWQAAQQ 200

Query: 183 CCNF 186
               
Sbjct: 201 ESEL 204


>gi|301026544|ref|ZP_07189972.1| ribonuclease D [Escherichia coli MS 69-1]
 gi|300395475|gb|EFJ79013.1| ribonuclease D [Escherichia coli MS 69-1]
          Length = 371

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPISWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|293410113|ref|ZP_06653689.1| ribonuclease D [Escherichia coli B354]
 gi|291470581|gb|EFF13065.1| ribonuclease D [Escherichia coli B354]
          Length = 371

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLSAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|170019851|ref|YP_001724805.1| ribonuclease D [Escherichia coli ATCC 8739]
 gi|256022532|ref|ZP_05436397.1| ribonuclease D [Escherichia sp. 4_1_40B]
 gi|293415119|ref|ZP_06657762.1| ribonuclease D [Escherichia coli B185]
 gi|300951410|ref|ZP_07165251.1| ribonuclease D [Escherichia coli MS 116-1]
 gi|300956696|ref|ZP_07168970.1| ribonuclease D [Escherichia coli MS 175-1]
 gi|301645686|ref|ZP_07245613.1| ribonuclease D [Escherichia coli MS 146-1]
 gi|307138464|ref|ZP_07497820.1| ribonuclease D [Escherichia coli H736]
 gi|331642413|ref|ZP_08343548.1| ribonuclease D [Escherichia coli H736]
 gi|331653208|ref|ZP_08354213.1| ribonuclease D [Escherichia coli M718]
 gi|169754779|gb|ACA77478.1| ribonuclease D [Escherichia coli ATCC 8739]
 gi|260449075|gb|ACX39497.1| ribonuclease D [Escherichia coli DH1]
 gi|291432767|gb|EFF05746.1| ribonuclease D [Escherichia coli B185]
 gi|300316496|gb|EFJ66280.1| ribonuclease D [Escherichia coli MS 175-1]
 gi|300449336|gb|EFK12956.1| ribonuclease D [Escherichia coli MS 116-1]
 gi|301076058|gb|EFK90864.1| ribonuclease D [Escherichia coli MS 146-1]
 gi|323937062|gb|EGB33342.1| ribonuclease D [Escherichia coli E1520]
 gi|323940530|gb|EGB36721.1| ribonuclease D [Escherichia coli E482]
 gi|331039211|gb|EGI11431.1| ribonuclease D [Escherichia coli H736]
 gi|331049306|gb|EGI21378.1| ribonuclease D [Escherichia coli M718]
 gi|332343528|gb|AEE56862.1| ribonuclease D [Escherichia coli UMNK88]
 gi|333006772|gb|EGK26269.1| ribonuclease D [Shigella flexneri K-272]
          Length = 371

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|58584516|ref|YP_198089.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58418832|gb|AAW70847.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 399

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 10/201 (4%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            DI  E  A+    IA DTE +        RL ++Q+S G+ +  +  +A  + +   + 
Sbjct: 10  EDICEELIAKKPKFIAADTEFIRNHLTYYPRLSLIQISYGEKSFIVDALAP-EVDLSFIK 68

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            ++++ +  K+FH  R DI  LF  F     P+F T++A+     Y +  G    +++  
Sbjct: 69  KIMLNREITKVFHSCRQDIESLFTVFKCIPAPIFDTQVAAMFCHYYHDFIGYSKVVEQYQ 128

Query: 128 GINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           G+ + K   ++SDW    LS +QL YA SDVVHL+ L     ++L+  GR          
Sbjct: 129 GVVLDKIKAKNSDWLRRPLSKDQLDYAISDVVHLYDLHQILCDRLEESGRMGWFHEEMES 188

Query: 187 LMDRAEL-----DLLGWENVD 202
           ++D  +      D   W+ + 
Sbjct: 189 VVDINKYLHSPKD--AWKRIK 207


>gi|110641921|ref|YP_669651.1| ribonuclease D [Escherichia coli 536]
 gi|300981914|ref|ZP_07175784.1| ribonuclease D [Escherichia coli MS 200-1]
 gi|110343513|gb|ABG69750.1| ribonuclease D [Escherichia coli 536]
 gi|300307392|gb|EFJ61912.1| ribonuclease D [Escherichia coli MS 200-1]
 gi|324011590|gb|EGB80809.1| ribonuclease D [Escherichia coli MS 60-1]
          Length = 371

 Score =  227 bits (580), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GISDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|110805403|ref|YP_688923.1| ribonuclease D [Shigella flexneri 5 str. 8401]
 gi|110614951|gb|ABF03618.1| RNase D, processes tRNA precursor [Shigella flexneri 5 str. 8401]
 gi|281600843|gb|ADA73827.1| RNase D [Shigella flexneri 2002017]
 gi|332759595|gb|EGJ89901.1| ribonuclease D [Shigella flexneri K-671]
 gi|333018392|gb|EGK37691.1| ribonuclease D [Shigella flexneri K-304]
          Length = 375

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRVFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|71083204|ref|YP_265923.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062317|gb|AAZ21320.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062]
          Length = 203

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 81/204 (39%), Positives = 125/204 (61%), Gaps = 4/204 (1%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            I++H+ D+P +      + IAVD E +GL  +RD LC++Q+S G+    II++   + +
Sbjct: 4   DIKLHKNDLPEDLDLG--NIIAVDGEFMGLNVKRDPLCLIQISTGNSDAHIIQLDREKYD 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           APNL  +L D    KIFHYGR D+A + +        +  TKIAS+L R+Y++ H LK  
Sbjct: 62  APNLNKVLSDASIIKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +KE + +++SK  QSSD+   +LS  QL+Y A+DV++LH +  +  + L R  R DL  S
Sbjct: 122 IKEFMNVDVSKQFQSSDFGG-ELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKS 180

Query: 183 CCNFLMDRAELDLLGWENVDIFSH 206
           C  FL  R +LDL  +++ DI+SH
Sbjct: 181 CLAFLKTRVDLDLALFKD-DIWSH 203


>gi|331647298|ref|ZP_08348392.1| ribonuclease D [Escherichia coli M605]
 gi|330911610|gb|EGH40120.1| ribonuclease D [Escherichia coli AA86]
 gi|331044081|gb|EGI16217.1| ribonuclease D [Escherichia coli M605]
          Length = 371

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNIFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|188582284|ref|YP_001925729.1| ribonuclease D [Methylobacterium populi BJ001]
 gi|179345782|gb|ACB81194.1| ribonuclease D [Methylobacterium populi BJ001]
          Length = 384

 Score =  227 bits (579), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 3/185 (1%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D  A  AA+    + VDTE +       +LC++Q++  DG   ++   A   +      
Sbjct: 11  SDACARLAAQT--FVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKDLDLKPFFE 68

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++ DE   K+FH  R D+ +++   G+   P F T++A+ +   Y +    +  + ++  
Sbjct: 69  LMADESTVKVFHSARQDLEIIWLLGGLLPHPFFDTQVAAMVC-GYGDSVSYEQLVNDVAK 127

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             I K+ + +DWS   LS+ QL YA SDV HL  +      +L    R          L 
Sbjct: 128 ARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWLDEEMAVLT 187

Query: 189 DRAEL 193
                
Sbjct: 188 SPETY 192


>gi|309788586|ref|ZP_07683188.1| ribonuclease D [Shigella dysenteriae 1617]
 gi|308923613|gb|EFP69118.1| ribonuclease D [Shigella dysenteriae 1617]
          Length = 275

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|320173702|gb|EFW48889.1| Ribonuclease D [Shigella dysenteriae CDC 74-1112]
          Length = 371

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I S          G    ++
Sbjct: 61  PLKAILRDPAITKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|320181157|gb|EFW56076.1| Ribonuclease D [Shigella boydii ATCC 9905]
 gi|332089922|gb|EGI95022.1| ribonuclease D [Shigella boydii 5216-82]
 gi|332093315|gb|EGI98374.1| ribonuclease D [Shigella dysenteriae 155-74]
          Length = 371

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKSILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|333003670|gb|EGK23206.1| ribonuclease D [Shigella flexneri VA-6]
          Length = 371

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRADWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|87199358|ref|YP_496615.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444]
 gi|87135039|gb|ABD25781.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444]
          Length = 405

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 5/192 (2%)

Query: 4   IRVHEG--DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           I   E   D+    A    D + VDTE +        LC+VQ++       I  +A G  
Sbjct: 7   ITTTEALADLCERLA--KADFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPLAPGLD 64

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            +P L  ++ +E   K+FH G  D+ +++   G    P+F T+IA  +  + + Q G  +
Sbjct: 65  MSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGKTPHPIFDTQIA-MMAVSQSEQIGYSN 123

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++  LG++I K  + +DWS   L++ Q++YA  DV HL  +  +  ++L + GR +   
Sbjct: 124 LVESWLGLSIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPKLLKRLIKTGRGEWLD 183

Query: 182 SCCNFLMDRAEL 193
                L D    
Sbjct: 184 IEMEKLADPENY 195


>gi|298291118|ref|YP_003693057.1| ribonuclease D [Starkeya novella DSM 506]
 gi|296927629|gb|ADH88438.1| ribonuclease D [Starkeya novella DSM 506]
          Length = 385

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 5/204 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +    A         I VDTE L       +LC+VQL+  +  + +  +A G 
Sbjct: 1   MDMITTTDTLSAACERLARHPFITVDTEFLRETTFWPKLCVVQLASVEEAIVVDAVADGI 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             AP    ++ DEK  K+FH GR DI ++++  G+   PVF T++A+ +   + +     
Sbjct: 61  DLAP-FFALMSDEKVLKVFHAGRQDIEIVWHLAGIIPHPVFDTQVAAMVL-GHGDSISYD 118

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++ + G  + K+ + +DWS   LS  Q+ YA +DV HL  + L+    L++ GR+D  
Sbjct: 119 QLVQRITGEVLDKSLRFTDWSRRPLSAAQIAYAEADVTHLRDVFLKLDADLKKRGRADWV 178

Query: 181 TSCCNFLMDRAEL---DLLGWENV 201
                 L             WE +
Sbjct: 179 GEEMAVLTSPDTYRQEPERAWERL 202


>gi|30062942|ref|NP_837113.1| ribonuclease D [Shigella flexneri 2a str. 2457T]
 gi|56479892|ref|NP_707318.2| ribonuclease D [Shigella flexneri 2a str. 301]
 gi|30041191|gb|AAP16920.1| RNase D [Shigella flexneri 2a str. 2457T]
 gi|56383443|gb|AAN43025.2| RNase D [Shigella flexneri 2a str. 301]
 gi|313649164|gb|EFS13598.1| ribonuclease D [Shigella flexneri 2a str. 2457T]
 gi|332758877|gb|EGJ89192.1| ribonuclease D [Shigella flexneri 2747-71]
 gi|332762455|gb|EGJ92720.1| ribonuclease D [Shigella flexneri 4343-70]
 gi|332767130|gb|EGJ97325.1| ribonuclease D [Shigella flexneri 2930-71]
 gi|333004261|gb|EGK23792.1| ribonuclease D [Shigella flexneri K-218]
          Length = 371

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRVFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|301327561|ref|ZP_07220781.1| ribonuclease D [Escherichia coli MS 78-1]
 gi|300845871|gb|EFK73631.1| ribonuclease D [Escherichia coli MS 78-1]
          Length = 371

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQREYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|292899665|ref|YP_003539034.1| ribonuclease D [Erwinia amylovora ATCC 49946]
 gi|291199513|emb|CBJ46630.1| ribonuclease D [Erwinia amylovora ATCC 49946]
          Length = 373

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 4/191 (2%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+      +   C  AR V A+A+DTE +       RL ++QL  G+    I  +     
Sbjct: 4   TMITTNAALCEVCQRARQVPALALDTEFVRTRTYYPRLGLIQLYDGETICLIDPLP--IT 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +      +L+D++  K  H G  D+ V  + FGV  +P+  T+I +  +       G   
Sbjct: 62  DWTPFRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFS-GRPLSCGFAT 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++   GI + K++  +DW A  LS++Q +YAA+DV +L  +  +   + +  G+   A 
Sbjct: 121 IVESFTGIVLDKSESRTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAAL 180

Query: 182 SCCNFLMDRAE 192
             C  L  R  
Sbjct: 181 DECRLLCQRRT 191


>gi|254456084|ref|ZP_05069513.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083086|gb|EDZ60512.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211]
          Length = 203

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/205 (39%), Positives = 123/205 (60%), Gaps = 4/205 (1%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
             I++H+ D+P +      + +AVD E +GL  RRD LC++QLS G+    I+++     
Sbjct: 3   NNIKLHQKDLPEDLDLG--NVLAVDGEFMGLNVRRDPLCLIQLSTGNSDAHIVQLDRKSY 60

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            APNL+ +L DE   KIFHYGR D+A + Y        +  TKIAS+L R+Y++ H LK 
Sbjct: 61  EAPNLIKILKDETITKIFHYGRADMAHIKYYLKTETNNILDTKIASKLARSYSDNHSLKT 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            +KE   ++ISK  QSSD+    L+  QL+Y A+DV++LH +  +  + L+R  R  L  
Sbjct: 121 LIKEFANVDISKQFQSSDFGG-TLTPAQLKYCANDVIYLHQIHDELFKILERENRIKLYK 179

Query: 182 SCCNFLMDRAELDLLGWENVDIFSH 206
            C +FL  R +LDL  +++ DI+SH
Sbjct: 180 DCLSFLKTRVDLDLALFKD-DIWSH 203


>gi|283785541|ref|YP_003365406.1| ribonuclease D [Citrobacter rodentium ICC168]
 gi|282948995|emb|CBG88598.1| ribonuclease D [Citrobacter rodentium ICC168]
          Length = 377

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 7/200 (3%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  +   C A R   AIA+DTE +       +L ++QL  G+    I     G  +  
Sbjct: 7   TTDDALATLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGERVALIDP--HGISDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDTAITKYLHAGSEDLEVFLNAFGELPQPLIDTQILAAFC-GRPLSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYTGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPIAGKLMAETEAAGWLPAALDEC 183

Query: 185 NFLMDRAELDLL---GWENV 201
             +  R +  L     W ++
Sbjct: 184 RLMQQRRQEILAPEEAWRDI 203


>gi|320157018|ref|YP_004189397.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
 gi|319932330|gb|ADV87194.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
          Length = 390

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 4/184 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   C+ AR  D + +DTE +       +L ++QL  GD    I        +
Sbjct: 24  IITENQDLVRVCSKAREADVVMLDTEFVRTRTYYPQLGLIQLFDGDTLSLIDP--TVLTD 81

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L D    K+ H    D+ V    FG    P+  T+I +     +    G    
Sbjct: 82  MSAFTELLNDASVMKVLHACGEDLEVFHNAFGAIPVPMVDTQIMAAFL-GHGLSTGFAAL 140

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  L     EK+   G    A  
Sbjct: 141 VEQYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMEAGWWQAAQQ 200

Query: 183 CCNF 186
               
Sbjct: 201 ESEL 204


>gi|312113633|ref|YP_004011229.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
 gi|311218762|gb|ADP70130.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
          Length = 404

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 7/207 (3%)

Query: 1   MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           +  +     D+   C A      + VDTE +     R +LC++Q++       +  +   
Sbjct: 25  LPPVITSITDLKTLCDALAGQPYVTVDTEFMRQTTYRPKLCLIQMAAPGIEAVVDPLP-- 82

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +      ++ +    K+FH  R DI +++   GV   P+F T+IA+ +   + +    
Sbjct: 83  NLDLSPFYALMANTAVVKVFHAARQDIEIVWQEAGVIPMPLFDTQIAA-MALGHGDAISY 141

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              +K+LL  N  K  Q+ DW    L  +QL+YA  DV +L  +  +  ++L++ GR   
Sbjct: 142 GALVKKLLKKNHDKTYQAIDWCQRPLGPKQLEYALGDVTYLRDVYAKLKQRLEQTGREPW 201

Query: 180 ATSCCNFLMDRAELDL---LGWENVDI 203
                  L D           W+ + +
Sbjct: 202 LEEEVAVLTDPKTYAFDPADAWKRLKL 228


>gi|159044436|ref|YP_001533230.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12]
 gi|157912196|gb|ABV93629.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12]
          Length = 385

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 11/215 (5%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPG----DGTVDIIR 55
           M T+      +   CA A   D + VDTE L       +LC+VQL+      +  V +  
Sbjct: 1   MDTL-TDTAALADFCARAAEHDYVTVDTEFLRERTYYAKLCLVQLAYPGEGEETAVLVDP 59

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           +A G   AP L  +  +    K+FH  R D+ + F   GV   P+F T++A+ +   +  
Sbjct: 60  LAEGMSLAPML-DLFRNPDVVKVFHAARQDLEIFFVEHGVFPEPLFDTQVAAMVC-GFGE 117

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G +  ++++   ++ K  + +DWS   LS  Q +YA +DV HL  +       + + G
Sbjct: 118 QVGYETLVRKIARESLDKTSRFTDWSHRPLSKAQKKYALADVTHLRVIYEYLAAAIDKTG 177

Query: 176 RSDLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
           R          L+D     +     W  V   ++S
Sbjct: 178 RRAWVEEELQGLLDPEIYVVDPDEAWRRVKTRTNS 212


>gi|310815760|ref|YP_003963724.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
 gi|308754495|gb|ADO42424.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
          Length = 388

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 8/213 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIA 57
           M TI   E  + + CA A     + VDTE L       +LC+VQL  S  D    ++   
Sbjct: 1   MKTITTTEA-LASFCAEAAKHPYVTVDTEFLRERTYYAKLCLVQLAFSGPDADAALVDPL 59

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
           A   +   L  + ++    K+FH  R D+ +      V   P+F T++A+ +   Y  Q 
Sbjct: 60  ADGIDLKPLYDLFLNPAVVKVFHAARQDLEIFSVGQNVIPAPLFDTQVAAMVC-GYGEQV 118

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
             +   +++   +I K  + +DWS   LS+ Q +YA +DV HL  +    + ++ + GR+
Sbjct: 119 SYETLARKIAKADIDKTSRFTDWSRRPLSEAQKEYALADVTHLRQIYENLSAQIAKSGRA 178

Query: 178 DLATSCCNFLMDRAELDL---LGWENVDIFSHS 207
                    L D     +     W  V   + S
Sbjct: 179 AWVAEEMGVLNDPDTYRVDPEQAWLRVKTRTSS 211


>gi|323968571|gb|EGB63977.1| ribonuclease D [Escherichia coli M863]
 gi|327252925|gb|EGE64579.1| ribonuclease D [Escherichia coli STEC_7v]
          Length = 371

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +     +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--VITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|190570587|ref|YP_001974945.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356859|emb|CAQ54230.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 394

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 10/197 (5%)

Query: 13  AECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            E  A+    IAVDTE +        RL ++Q+S G+ +  I+ +     +   +  +++
Sbjct: 14  EELMAKDPKFIAVDTEFIRNNLTYYPRLSLIQISYGEKSF-IVDVLVPGIDLSLIKKIML 72

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           + +  K+FH  R DI  L         P+F T++A+     Y +  G    +++  G+ +
Sbjct: 73  NREITKVFHSCRQDIESLLTVLKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGVAL 132

Query: 132 SK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            K   ++SDW    LS++QL YA +DV+HL+ L      KL+   R          ++D 
Sbjct: 133 DKIKAKNSDWLKRPLSEDQLDYAVNDVIHLYDLHQILCNKLEENNRMGWFQEEMESIVDV 192

Query: 191 AEL-----DLLGWENVD 202
            +      D   W+ + 
Sbjct: 193 NKYLHNPKD--AWKRIK 207


>gi|198244835|ref|YP_002215323.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197939351|gb|ACH76684.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 375

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 8   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 66  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 185 LMQQRRQ 191


>gi|205357371|ref|ZP_02347252.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205322073|gb|EDZ09912.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 375

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 8   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 66  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 185 LMQQRRQ 191


>gi|53803525|ref|YP_114794.1| ribonuclease D [Methylococcus capsulatus str. Bath]
 gi|53757286|gb|AAU91577.1| ribonuclease D [Methylococcus capsulatus str. Bath]
          Length = 388

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 8/186 (4%)

Query: 10  DIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           D PAE AA          IAVDTE +       + C++Q++ G     I  +A   ++  
Sbjct: 13  DSPAELAAFCRSIGGSPWIAVDTEFMRDKTYYPKFCLLQIANGTQAACIDPLA--IEDLR 70

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            +  +L +    K+FH  R D+ + F+ F     P+F T++A+ L   +  Q G    + 
Sbjct: 71  EVECLLFNRAITKVFHAARQDLEIFFHRFRAVPAPIFDTQLAAPLV-GHPEQVGYASLVS 129

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            +LG+ + K    +DWS   LS  Q +YAA+DV+HL AL  +  E+L+RLGR        
Sbjct: 130 AMLGVTVDKEHTRTDWSQRPLSAAQKEYAANDVIHLAALYPRMREQLERLGRYAWLVDEF 189

Query: 185 NFLMDR 190
             L + 
Sbjct: 190 AALEEP 195


>gi|205352517|ref|YP_002226318.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205359829|ref|ZP_02832566.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|207856676|ref|YP_002243327.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205272298|emb|CAR37177.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205342684|gb|EDZ29448.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206708479|emb|CAR32800.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627575|gb|EGE33918.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 375

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 8   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 66  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 185 LMQQRRQ 191


>gi|323137715|ref|ZP_08072791.1| ribonuclease D [Methylocystis sp. ATCC 49242]
 gi|322397012|gb|EFX99537.1| ribonuclease D [Methylocystis sp. ATCC 49242]
          Length = 393

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 6/197 (3%)

Query: 9   GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            ++ A C        + VDTE L       ++C++Q++  +  V I  ++ G    P   
Sbjct: 8   DELAAVCDRFSRHPFVTVDTEFLRETTFWPKVCVIQIASPEEAVAIDALSEGIDLTP-FF 66

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            ++ +    K+FH  R D+ +++    +   P+F T++A+ +   +  Q    + +K + 
Sbjct: 67  SLMANADVVKVFHAARQDLEIIWRLARLIPAPLFDTQVAAMVC-GFGEQASYLELVKAIT 125

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
             N+ K+ + +DWS   LS  Q+ YA +DV HL  +     ++L+R  R +        L
Sbjct: 126 RANLDKSSRFTDWSRRPLSAAQIDYAIADVTHLRDIYTTLRQRLERSNRLEWLADEMQTL 185

Query: 188 MDRAELDL---LGWENV 201
              A  +      WE +
Sbjct: 186 TSPATYEQHPENAWERL 202


>gi|94497624|ref|ZP_01304192.1| ribonuclease D [Sphingomonas sp. SKA58]
 gi|94422841|gb|EAT07874.1| ribonuclease D [Sphingomonas sp. SKA58]
          Length = 412

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 5/199 (2%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   CA       +AVDTE +        LC+VQ++       I   A G    P L  +
Sbjct: 37  LSDFCARIANSPYVAVDTEFMRENSYWPDLCLVQVADSHEAAAIDPKAPGIDLTPLLNLL 96

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           + +E   K+FH G  DI ++    G    P+F T+IA+ +   +  Q G  + +   LG+
Sbjct: 97  VDNEDVLKVFHAGGQDIEIVHNLTGKAPHPMFDTQIAA-MALGFGEQIGYGNLVDAWLGV 155

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K  + +DW+   L   Q+ YA  DV +L  +  +  E+L++ GR D        + +
Sbjct: 156 QLDKGARFTDWARRPLDKRQIDYAIGDVTYLIKIFPKMLEELKKTGRGDWLDQEMERISN 215

Query: 190 RAELD---LLGWENVDIFS 205
            +  +      W+ V I S
Sbjct: 216 PSNYENDPADAWKRVRIAS 234


>gi|333018685|gb|EGK37978.1| ribonuclease D [Shigella flexneri K-227]
          Length = 371

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YA +DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAVADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|326623067|gb|EGE29412.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 371

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 4   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 62  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 120

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 181 LMQQRRQ 187


>gi|194445618|ref|YP_002041074.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|200390008|ref|ZP_03216619.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|194404281|gb|ACF64503.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|199602453|gb|EDZ00999.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 375

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 8   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 66  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 185 LMQQRRQ 191


>gi|254508462|ref|ZP_05120581.1| ribonuclease D [Vibrio parahaemolyticus 16]
 gi|219548574|gb|EED25580.1| ribonuclease D [Vibrio parahaemolyticus 16]
          Length = 386

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 12/190 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR VD + +DTE +       +L ++QL  G+    I             V +L D    
Sbjct: 34  AREVDVVMLDTEFVRTRTFYPQLGLIQLFDGEQLSLIDP--TELDEMTPFVELLQDTSVL 91

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V   +FG    P+  T++ +     +    G    ++  L + + K++ 
Sbjct: 92  KVLHACGEDLEVFQNSFGCLPYPMVDTQVMAAFL-GHGLSTGFASLVEHYLQVELDKSES 150

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL--------- 187
            +DW A  L+D+QL YAA+DV +L  L  +    +   G  + A    + L         
Sbjct: 151 RTDWLARPLTDKQLDYAAADVFYLLPLYEKLLNAVTEAGWWEAAQQESDLLAAKRIKNTD 210

Query: 188 MDRAELDLLG 197
            + A LD+ G
Sbjct: 211 PEMAYLDVKG 220


>gi|62180380|ref|YP_216797.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194734944|ref|YP_002114851.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197248423|ref|YP_002146207.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197301010|ref|ZP_02662940.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|205360221|ref|ZP_02681919.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|62128013|gb|AAX65716.1| RNase D, processes tRNA precursor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194710446|gb|ACF89667.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197212126|gb|ACH49523.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197289302|gb|EDY28669.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|205350690|gb|EDZ37321.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|322714855|gb|EFZ06426.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 375

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 8   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 66  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 185 LMQQRRQ 191


>gi|260768989|ref|ZP_05877923.1| ribonuclease D [Vibrio furnissii CIP 102972]
 gi|260617019|gb|EEX42204.1| ribonuclease D [Vibrio furnissii CIP 102972]
          Length = 397

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 4/179 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            D+   C  AR  D + +DTE +       +L ++QL  G+    I  +A         V
Sbjct: 36  NDLERVCSLARDADVVMLDTEFVRTRTFYPQLGLIQLFDGENLSLIDPLA--MDEMTPFV 93

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    DI V   +FG    P+  T+I +     Y    G      +LL
Sbjct: 94  ELLQDTSVLKVLHACGEDIEVFKTSFGCVPFPMVDTQIMAAFL-GYGLSTGFAALAHDLL 152

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
            + + K++  +DW A  LS +QL+YAA+DV +L  +  Q  EK+ + G  + A      
Sbjct: 153 NVELDKSESRTDWLARPLSQKQLEYAAADVFYLMPMYEQLLEKVTQAGWWEAAQQESEL 211


>gi|320085676|emb|CBY95454.1| RNase D, processes tRNA precursor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 371

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 4   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 62  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 120

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 181 LMQQRRQ 187


>gi|16765158|ref|NP_460773.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194448143|ref|YP_002045863.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197262566|ref|ZP_03162640.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205358997|ref|ZP_02666341.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|16420349|gb|AAL20732.1| RNase D [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194406447|gb|ACF66666.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197240821|gb|EDY23441.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205339484|gb|EDZ26248.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|261247002|emb|CBG24819.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993774|gb|ACY88659.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158341|emb|CBW17840.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332988704|gb|AEF07687.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 375

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 8   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 66  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 185 LMQQRRQ 191


>gi|16760707|ref|NP_456324.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29141535|ref|NP_804877.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|25289178|pir||AB0725 ribonuclease D [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503004|emb|CAD05500.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137162|gb|AAO68726.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 375

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 8   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 66  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 185 LMQQRRQ 191


>gi|195873245|ref|ZP_02696622.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634367|gb|EDX52719.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 375

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 8   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 66  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 185 LMQQRRQ 191


>gi|205357935|ref|ZP_02574364.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328669|gb|EDZ15433.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|323130091|gb|ADX17521.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 390

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 23  TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 80

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 81  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 139

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 140 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 199

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 200 LMQQRRQ 206


>gi|254294269|ref|YP_003060292.1| ribonuclease D [Hirschia baltica ATCC 49814]
 gi|254042800|gb|ACT59595.1| ribonuclease D [Hirschia baltica ATCC 49814]
          Length = 390

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 5/191 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +  + IAVDTE         +LC++Q +  +    I  ++     AP L  ++ D  R 
Sbjct: 25  LKKGEFIAVDTEFHRESTFWPKLCLIQAATLEFDCLIDPLSPNIDLAPFL-DLMADTSRV 83

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH  R D+ +     G    P+F +++A+ +     +    ++ + +LL   + K+ Q
Sbjct: 84  KVFHAARQDMEIFTKLIGTPPAPIFDSQVAA-MACGLGDSVSYENLVSQLLKARVDKSSQ 142

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL- 195
            +DW    L+++QL YA  DV HL    ++   KL++LGR          L++    D  
Sbjct: 143 FTDWQRRPLTEKQLDYARGDVTHLRHCYVKLKAKLEKLGRMGWIEEETEILVNPDTYDTN 202

Query: 196 --LGWENVDIF 204
               W+ + I 
Sbjct: 203 PKNAWKRMKIR 213


>gi|56413264|ref|YP_150339.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362190|ref|YP_002141827.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127521|gb|AAV77027.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093667|emb|CAR59137.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 371

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 4   TDDALASLCEAVRTCPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 62  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 181 LMQQRRQ 187


>gi|161613674|ref|YP_001587639.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161363038|gb|ABX66806.1| hypothetical protein SPAB_01399 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|322616813|gb|EFY13721.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618052|gb|EFY14944.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625723|gb|EFY22542.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626173|gb|EFY22983.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633779|gb|EFY30519.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638933|gb|EFY35626.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640751|gb|EFY37401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644138|gb|EFY40683.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649210|gb|EFY45648.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655369|gb|EFY51677.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660875|gb|EFY57106.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662828|gb|EFY59035.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668012|gb|EFY64171.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674226|gb|EFY70320.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675419|gb|EFY71493.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683166|gb|EFY79182.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686859|gb|EFY82837.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195248|gb|EFZ80428.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200159|gb|EFZ85245.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203843|gb|EFZ88861.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207397|gb|EFZ92345.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213750|gb|EFZ98532.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217380|gb|EGA02099.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220925|gb|EGA05358.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323224700|gb|EGA08971.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231403|gb|EGA15516.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235843|gb|EGA19922.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240412|gb|EGA24455.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245305|gb|EGA29305.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246673|gb|EGA30645.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253527|gb|EGA37355.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323263330|gb|EGA46866.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266778|gb|EGA50264.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268984|gb|EGA52440.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 371

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 4   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 62  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 181 LMQQRRQ 187


>gi|194468559|ref|ZP_03074543.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205358811|ref|ZP_02659348.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194454923|gb|EDX43762.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331760|gb|EDZ18524.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 375

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 8   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D +  K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 66  LKAVLRDTEITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 125 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 184

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 185 LMQQRRQ 191


>gi|224583693|ref|YP_002637491.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238912118|ref|ZP_04655955.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|224468220|gb|ACN46050.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 371

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 4   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 62  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFAAMVEE 120

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 181 LMQQRRQ 187


>gi|218515424|ref|ZP_03512264.1| ribonuclease III protein [Rhizobium etli 8C-3]
          Length = 177

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C      D I +DTE L        LC++Q++     V +  +A G   AP 
Sbjct: 4   TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLVDPLAKGIDLAP- 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              ++ D K  K+FH  R DI ++F    +   P+F T++A+ +   + +       +  
Sbjct: 63  FFELMADTKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVC-GFGDSVSYDQLVSR 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           +  ++I K+ + +DWS   LSD+QL+YA +DV HL  + L    +L R GR+   T
Sbjct: 122 IKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLT 177


>gi|213648384|ref|ZP_03378437.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
          Length = 371

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 4   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 62  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 181 LMQQRRQ 187


>gi|326388937|ref|ZP_08210519.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206537|gb|EGD57372.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370]
          Length = 445

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 3/190 (1%)

Query: 6   VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +   D  A+  AR   A  + VDTE +        LC+VQ++       I  +A G   +
Sbjct: 7   ITTTDALADICARLAKAEFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPMAPGIDLS 66

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  ++ +E   K+FH G  D+ +++   G    P+F T+IA  +  + + Q G  + +
Sbjct: 67  PLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGRTPHPIFDTQIA-MMAVSQSEQIGYSNLV 125

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +  LG +I K  + +DWS   L++ Q++YA  DV HL  +  +  ++L + GR +     
Sbjct: 126 ESWLGFSIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPRILKRLIKTGRGEWLDIE 185

Query: 184 CNFLMDRAEL 193
              L D    
Sbjct: 186 MEKLADPENY 195


>gi|261209844|ref|ZP_05924146.1| ribonuclease D [Vibrio sp. RC341]
 gi|260841142|gb|EEX67662.1| ribonuclease D [Vibrio sp. RC341]
          Length = 398

 Score =  224 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 30  IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVMDE 87

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 88  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 146

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  + A  
Sbjct: 147 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWEAALQ 206

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 207 ESELQVAKRTKVSNPELAYLDIKGAWQ 233


>gi|146279098|ref|YP_001169257.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025]
 gi|145557339|gb|ABP71952.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025]
          Length = 385

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 9/214 (4%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRI 56
           M TI   E       AA+    + +DTE L       +LC++Q++     G+  V +  +
Sbjct: 1   MKTITTTEALAAFCEAAKAAPYVTIDTEFLRERTYWSKLCLIQMALPGKTGE-AVLVDPV 59

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            A   +   L  +   E   K+FH  R D+ + F    V   P+F T++A+ +   +  Q
Sbjct: 60  EAPDMSLEPLYDLFRHEPTVKVFHAARQDLEIFFVEGRVFPTPLFDTQVAAMVC-GFGEQ 118

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +K++    + K  + +DWS   LSD Q  YA +DV HL  +    + ++++ GR
Sbjct: 119 VGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGR 178

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
                     L D     +     W  +   + S
Sbjct: 179 QRWVEEELAILTDPETYTVRPEEAWLRIKTRTTS 212


>gi|312912807|dbj|BAJ36781.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224451|gb|EFX49514.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 371

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 4   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 62  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 181 LMQQRRQ 187


>gi|27363618|ref|NP_759146.1| ribonuclease D [Vibrio vulnificus CMCP6]
 gi|27359734|gb|AAO08673.1| ribonuclease D [Vibrio vulnificus CMCP6]
          Length = 390

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 4/184 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   C+ AR  D + +DTE +       +L ++QL  GD    I        +
Sbjct: 24  IITENQDLVRVCSKAREADVVMLDTEFVRTRTYYPQLGLIQLFDGDTLSLIDP--TVLTD 81

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L D    K+ H    D+ V     G    P+  T+I +     +    G    
Sbjct: 82  MSAFTELLNDASVMKVLHACGEDLEVFHNALGAIPVPMVDTQIMAAFL-GHGLSTGFAAL 140

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  L     EK+   G    A  
Sbjct: 141 VEQYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYEILLEKVMEAGWWQAAQQ 200

Query: 183 CCNF 186
               
Sbjct: 201 ESEL 204


>gi|262404337|ref|ZP_06080892.1| ribonuclease D [Vibrio sp. RC586]
 gi|262349369|gb|EEY98507.1| ribonuclease D [Vibrio sp. RC586]
          Length = 381

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 13  IITQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVMDE 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++   G  + A  
Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQ 189

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 190 ESELQVAKRIKVSNPEHAYLDIKGAWQ 216


>gi|213052594|ref|ZP_03345472.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213419335|ref|ZP_03352401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213426609|ref|ZP_03359359.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213609541|ref|ZP_03369367.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|289828970|ref|ZP_06546670.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
          Length = 371

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 4   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 62  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 181 LMQQRRQ 187


>gi|218531091|ref|YP_002421907.1| ribonuclease D [Methylobacterium chloromethanicum CM4]
 gi|218523394|gb|ACK83979.1| ribonuclease D [Methylobacterium chloromethanicum CM4]
          Length = 384

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 1/193 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +    A         + VDTE +       +LC++Q++  DG   ++   A  
Sbjct: 1   MELISATQALSDACTQFAAQPFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKD 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +      ++ DE   K+FH  R D+ +++   G+  +P F T++A+ +   Y +    +
Sbjct: 61  LDLKPFFDLMADESTVKVFHSARQDLEIIWLLGGLLPQPFFDTQVAAMVC-GYGDSVSYE 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + ++    I K+ + +DWS   LS+ QL YA SDV HL  +      +L    R    
Sbjct: 120 QLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWL 179

Query: 181 TSCCNFLMDRAEL 193
                 L      
Sbjct: 180 DEEMAVLTSPETY 192


>gi|294013278|ref|YP_003546738.1| ribonuclease D [Sphingobium japonicum UT26S]
 gi|292676608|dbj|BAI98126.1| ribonuclease D [Sphingobium japonicum UT26S]
          Length = 401

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 6/198 (3%)

Query: 13  AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A+  AR      IAVDTE +        LC+VQ++       I   A G   +P L  M+
Sbjct: 27  AQFCARIAKSPYIAVDTEFMRENSYWPDLCLVQVADEHEAAAIDPKAPGLDLSPLLDLMV 86

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            +E   K+FH G  D+ +++   G    P+F T+IA+ +      Q G  + +   LG+ 
Sbjct: 87  DNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFDTQIAA-MALGLGEQIGYGNLVDAWLGVQ 145

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           + K  + +DW+   L   Q+ YA  DV +L  +  +  E+L+R GR D        + D 
Sbjct: 146 LDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTGRGDWLDQEMERISDP 205

Query: 191 AELDLL---GWENVDIFS 205
           +  +      W+ V I S
Sbjct: 206 SNYENKPEEAWQRVRIAS 223


>gi|292488477|ref|YP_003531361.1| ribonuclease D [Erwinia amylovora CFBP1430]
 gi|291553908|emb|CBA20953.1| Ribonuclease D [Erwinia amylovora CFBP1430]
          Length = 369

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 3/176 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR V A+A+DTE +       RL ++QL  G+    I  +     +      +L+D++  
Sbjct: 15  ARQVPALALDTEFVRTRTYYPRLGLIQLYDGETICLIDPLP--ITDWTPFRDLLLDQQVI 72

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V  + FGV  +P+  T+I +  +       G    ++   GI + K++ 
Sbjct: 73  KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFS-GRPLSCGFATIVESFTGIVLDKSES 131

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            +DW A  LS++Q +YAA+DV +L  +  +   + +  G+   A   C  L  R  
Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAALDECRLLCQRRT 187


>gi|312172621|emb|CBX80877.1| Ribonuclease D [Erwinia amylovora ATCC BAA-2158]
          Length = 369

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 3/176 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR V A+A+DTE +       RL ++QL  G+    I  +     +      +L+D++  
Sbjct: 15  ARQVPALALDTEFVRTRTYYPRLGLIQLYDGETICLIDPLP--ITDWTPFRDLLLDQQVI 72

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V  + FGV  +P+  T+I +  +       G    ++   GI + K++ 
Sbjct: 73  KYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFS-GRPLSCGFATIVESFTGIVLDKSES 131

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            +DW A  LS++Q +YAA+DV +L  +  +   + +  G+   A   C  L  R  
Sbjct: 132 RTDWLARPLSEKQCRYAAADVFYLLPIAEKLVAETEAAGQMAAALDECRLLCQRRT 187


>gi|297182779|gb|ADI18933.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0010_09O16]
          Length = 203

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 128/207 (61%), Gaps = 5/207 (2%)

Query: 1   MTT-IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M T I +H+GD+P       +  +AVD E LGL  RRDRLC++Q+S G+    I+++   
Sbjct: 1   MNTKIELHKGDLPENLDLGTI--VAVDGEFLGLNVRRDRLCLIQVSSGNSDAHIVQLDRE 58

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             NAPNLV +L D+  +K+FHY R D+  + Y     V  + C+KI S+L RT+++ H L
Sbjct: 59  NYNAPNLVKILADKNIKKLFHYARSDLTHIKYYLKTDVNNIECSKIKSKLARTFSDSHSL 118

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           K  +KE   +++SK  Q+SD+   +LS  QL+Y A+DV++LH +  +  + L+R  R DL
Sbjct: 119 KTLIKEFANVDVSKQFQTSDFGG-ELSQGQLKYCANDVIYLHKIHSELDKILEREKRMDL 177

Query: 180 ATSCCNFLMDRAELDLLGWENVDIFSH 206
              C  FL  R +LDLL +++ DI+SH
Sbjct: 178 YRECIKFLHTRIKLDLLEFKD-DIWSH 203


>gi|229521896|ref|ZP_04411313.1| ribonuclease D [Vibrio cholerae TM 11079-80]
 gi|229340821|gb|EEO05826.1| ribonuclease D [Vibrio cholerae TM 11079-80]
          Length = 381

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 13  IISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A  
Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216


>gi|307295006|ref|ZP_07574848.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
 gi|306879480|gb|EFN10698.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
          Length = 388

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 5/199 (2%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           + + CA       IA+DTE +        LC+VQ++       I   A G   +P L  M
Sbjct: 13  LASFCARIAKSPYIAIDTEFMRENSYWPDLCLVQVADEHEAAAIDPKAPGLDLSPLLDLM 72

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           + +E   K+FH G  D+ +++   G    P+F T+IA+ +      Q G  + +   LG+
Sbjct: 73  VDNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFDTQIAA-MALGLGEQIGYGNLVDAWLGV 131

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K  + +DW+   L   Q+ YA  DV +L  +  +  E+L+R GR D        + D
Sbjct: 132 QLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTGRGDWLDQEMERISD 191

Query: 190 RAELDLL---GWENVDIFS 205
            +  +      W+ V I S
Sbjct: 192 PSNYENKPDEAWQRVRIAS 210


>gi|240139668|ref|YP_002964145.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1]
 gi|240009642|gb|ACS40868.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1]
          Length = 384

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 1/193 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +    A         + VDTE +       +LC++Q++  DG   ++   A  
Sbjct: 1   MELISATQALSDACTQFAAQPFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKD 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +      ++ DE   K+FH  R D+ +++   G+  +P F T++A+ +   Y +    +
Sbjct: 61  LDLKPFFDLMADESTVKVFHSARQDLEIIWLLGGLLPQPFFDTQVAAMVC-GYGDSVSYE 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + ++    I K+ + +DWS   LS+ QL YA SDV HL  +      +L    R    
Sbjct: 120 QLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWL 179

Query: 181 TSCCNFLMDRAEL 193
                 L      
Sbjct: 180 DEEMAVLTSPETY 192


>gi|33241189|ref|NP_876131.1| putative ribonuclease D [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238719|gb|AAQ00784.1| Ribonuclease D [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 214

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 79/208 (37%), Positives = 120/208 (57%), Gaps = 5/208 (2%)

Query: 2   TTIRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
            + +V E D+  +    +     +A+DTE +GL+  RDRLC+VQ+      V  I+I   
Sbjct: 9   ASFKVFETDLDDQWTQHFSTQSCLAIDTEAMGLIHGRDRLCLVQICDEQDNVACIKIQQH 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q  A NL  ++ D   EK+FHY RFD+A +     + V  +FCTK+AS++ RTY+ +HGL
Sbjct: 69  QTKANNLQSLMEDSAIEKVFHYARFDVAAISCNLNIAVNSIFCTKLASKIGRTYSPRHGL 128

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K+ + EL+GI + K  QSSDW    +L+++QL+YA +DV +L   R Q  + L R  R +
Sbjct: 129 KEVILELVGIELDKQAQSSDWGRVGELTEKQLEYATNDVRYLIQARNQLEKMLIREDRWE 188

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           L   C   +   +ELD+  + N  IF H
Sbjct: 189 LTKRCFECISVMSELDIRRFHN--IFEH 214


>gi|254286913|ref|ZP_04961865.1| ribonuclease D [Vibrio cholerae AM-19226]
 gi|150423063|gb|EDN15012.1| ribonuclease D [Vibrio cholerae AM-19226]
          Length = 381

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 13  IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  + A  
Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWEAALQ 189

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 190 ESELQVVKRTKVSNPELAYLDIKGAWQ 216


>gi|183220183|ref|YP_001838179.1| ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910303|ref|YP_001961858.1| ribonuclease D-like [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167774979|gb|ABZ93280.1| Ribonuclease D-related [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778605|gb|ABZ96903.1| Ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 212

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 89/209 (42%), Positives = 129/209 (61%), Gaps = 6/209 (2%)

Query: 2   TTIR--VHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
           +TI+  V +GD+  +   A +  D +AVD E +GL PRRDRLC+VQ+S     V +++I 
Sbjct: 6   STIKPAVLQGDLNEDFFEAFKKDDRLAVDCEMMGLNPRRDRLCVVQISDSKNKVALVQIL 65

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
            GQK AP++  +   ++  KIFH+ R D+  L    G++V+ VFCTKIAS+L RTYT++H
Sbjct: 66  PGQKEAPHIQKLFESKEITKIFHFARMDMTFLRARLGIKVQNVFCTKIASKLARTYTDKH 125

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           GLK+ ++E    NI K  QSSDW    L+ +Q+ YA++DV  L +L    TE + R  R 
Sbjct: 126 GLKELIREFFEENIDKKNQSSDWGKKILTKDQVDYASTDVRFLISLESILTEMMIRENRF 185

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            +A  C  FL  + ELDLL  E  ++F H
Sbjct: 186 TIAEKCFGFLETQVELDLL--EVYNLFEH 212


>gi|163852332|ref|YP_001640375.1| ribonuclease D [Methylobacterium extorquens PA1]
 gi|163663937|gb|ABY31304.1| ribonuclease D [Methylobacterium extorquens PA1]
          Length = 384

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 1/193 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +    A         + VDTE +       +LC++Q++  DG   ++   A  
Sbjct: 1   MELISATQALSDACTQFAAQPFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKD 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +      ++ DE   K+FH  R D+ +++   G+  +P F T++A+ +   Y +    +
Sbjct: 61  LDLKPFFDLMADESTVKVFHSARQDLEIIWLLGGLLPQPFFDTQVAAMVC-GYGDSVSYE 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + ++    I K+ + +DWS   LS+ QL YA SDV HL  +      +L    R    
Sbjct: 120 QLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWL 179

Query: 181 TSCCNFLMDRAEL 193
                 L      
Sbjct: 180 DEEMAVLTSPETY 192


>gi|46204778|ref|ZP_00049503.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 214

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 1/193 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +    A         + VDTE +       +LC++Q++  DG   ++   A  
Sbjct: 1   MELISETQALSDACARLAAQSFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKG 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +    + ++ DE   K+FH  R D+ +++   G+   P F T++A+ +   Y +    +
Sbjct: 61  LDLKPFLDLMADESTVKVFHSARQDLEIIWLLGGLLPHPFFDTQVAAMVC-GYGDSVSYE 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + ++    I K+ + +DWS   LSD QL YA SDV HL  +      +L R  R    
Sbjct: 120 QLVNDVAKARIDKSSRFTDWSRRPLSDAQLAYALSDVTHLVTIYQVLAAELVRTDRGLWL 179

Query: 181 TSCCNFLMDRAEL 193
                 L     +
Sbjct: 180 DEEMAVLTSPETI 192


>gi|54308269|ref|YP_129289.1| ribonuclease D [Photobacterium profundum SS9]
 gi|46912697|emb|CAG19487.1| hypothetical ribonuclease D [Photobacterium profundum SS9]
          Length = 374

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I      +   C  AR    + +DTE +       +L ++Q+  GD  V I  I     +
Sbjct: 5   IITTTQRLDTICDHARTHSVVMLDTEFVRTRTLYPKLGLIQMFDGDNLVLIDPIE--IDD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L D+   K+ H    D+ V  +  G    P+  T++ +     +    G    
Sbjct: 63  LTPFWDLLRDQSIIKVLHACGEDLEVFQHHAGCLPTPMIDTQLMAAFL-GHGVSAGFGSL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + E +G+++ K +  ++W A  L+D+QL YAA+DV +L  L     EK++  G  +    
Sbjct: 122 VSEYVGVDLEKGEARTNWLARPLTDKQLDYAAADVFYLLPLYETLLEKVKAKGWMEALEL 181

Query: 183 CCNFLMDRAE 192
            C  LM +  
Sbjct: 182 ECAALMQKRT 191


>gi|58697529|ref|ZP_00372780.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
 gi|58535998|gb|EAL59702.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
          Length = 284

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 10/201 (4%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            DI     A+    IAVDTE +        +L ++Q+S G+ +  I+     + +   + 
Sbjct: 10  EDICEGLIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSF-IVDALVPEIDLSFIK 68

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +++++   K+FH  R DI  L   F     P+F T++A+     Y +  G    +++  
Sbjct: 69  KIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQ 128

Query: 128 GINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           GI + K   ++SDW    LS++QL YA +DVVHL+ L      KL+   R          
Sbjct: 129 GIALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMES 188

Query: 187 LMDRAEL-----DLLGWENVD 202
           ++D  +      D   W+ + 
Sbjct: 189 IVDINKYLHSPKD--AWKRIK 207


>gi|254502050|ref|ZP_05114201.1| ribonuclease D [Labrenzia alexandrii DFL-11]
 gi|222438121|gb|EEE44800.1| ribonuclease D [Labrenzia alexandrii DFL-11]
          Length = 392

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 9/209 (4%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M  I   + D+ A C      D + VDTE L       +LC++Q++  +    +  +A G
Sbjct: 1   MEVITKTK-DLAAACQRLATNDYVTVDTEFLRETTFWPKLCVIQMAGTEMAFIVDALAEG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               P    ++ D+   K+FH  R DI ++++  G+   P+F T++A+ +   + +    
Sbjct: 60  LDLEP-FFDLMRDDSVTKVFHAARQDIEIIYHLGGLIPAPLFDTQVAAMVC-GFGDSISY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              + ++ G  I K+ + +DW+   L+ +QL YA +DV HL          L    R+  
Sbjct: 118 DQLVYKVTGARIDKSSRFTDWARRPLTAKQLDYALADVTHLRDAFQFLKANLAEQNRTHW 177

Query: 180 ATSCCNFLMD----RAELDLLGWENVDIF 204
                  L      RA+ D   W+ + + 
Sbjct: 178 VQDEMTVLTSVATYRADPD-QAWKRLKLR 205


>gi|254226821|ref|ZP_04920393.1| ribonuclease D [Vibrio cholerae V51]
 gi|125620668|gb|EAZ49030.1| ribonuclease D [Vibrio cholerae V51]
          Length = 381

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 13  IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  + A  
Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTQAGWWEAALQ 189

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216


>gi|325497053|gb|EGC94912.1| ribonuclease D [Escherichia fergusonii ECD227]
          Length = 375

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +    ++
Sbjct: 5   LITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLT--IRD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L D    K  H G  D+ V    FG   +P+  T++ +          G    
Sbjct: 63  WSPLKSVLRDPAITKFLHAGSEDLEVFLNKFGEMPQPLIDTQVLAAFC-GRPMSWGFASM 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A  
Sbjct: 122 VEEYSGVILDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMAETEASGWLPAALD 181

Query: 183 CCNFLMDRAE 192
            C  +  R +
Sbjct: 182 ECRLMQMRRQ 191


>gi|153826834|ref|ZP_01979501.1| ribonuclease D [Vibrio cholerae MZO-2]
 gi|149739355|gb|EDM53601.1| ribonuclease D [Vibrio cholerae MZO-2]
          Length = 381

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 13  IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A  
Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216


>gi|74311884|ref|YP_310303.1| ribonuclease D [Shigella sonnei Ss046]
 gi|73855361|gb|AAZ88068.1| RNase D [Shigella sonnei Ss046]
          Length = 375

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 7   TTDDALASLCEAVRVFPAIAQDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 65  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RLMQMRRQ 191


>gi|157145434|ref|YP_001452753.1| ribonuclease D [Citrobacter koseri ATCC BAA-895]
 gi|157082639|gb|ABV12317.1| hypothetical protein CKO_01177 [Citrobacter koseri ATCC BAA-895]
          Length = 371

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 7/200 (3%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  +   C A R   AIA+DTE +       +L ++QL  G+    I     G  +  
Sbjct: 3   TTDDALATLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHVALIDP--HGITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V   TFG   +P+  T+I +          G    ++
Sbjct: 61  PLRAVLRDTAITKFLHAGSEDLEVFLNTFGELPQPLIDTQILAAFC-GRPLSWGFAAMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EFTGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPITKKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAELDLL---GWENV 201
             +  R +  L     W ++
Sbjct: 180 RLMQQRRQEILAPEDAWRDI 199


>gi|262276742|ref|ZP_06054535.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114]
 gi|262223845|gb|EEY74304.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114]
          Length = 206

 Score =  224 bits (571), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 78/208 (37%), Positives = 124/208 (59%), Gaps = 4/208 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M   + +  DI  + + +   +IA+D E  GL P  D+L ++QL  G   V +++   G+
Sbjct: 1   MKNYKFYLSDIDGDTSLKNASSIAIDGEFSGLNPLTDKLHLLQLCDGSDFVHLVKF-EGK 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            NAPNL  +L + K +KIFH+GR D+A L     + V  +F TKI S+++R ++  HGLK
Sbjct: 60  YNAPNLKEILENNKIKKIFHFGRADLAFLKQHLDIHVTNIFDTKIGSKISRKFSPHHGLK 119

Query: 121 DNLKELLGINISKAQQSSDWSA--DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           D  ++L+ IN+SK  Q+SDW    ++ S++Q+ YA  DV++LH ++ +  + L+R  + +
Sbjct: 120 DLCRDLININLSKEYQTSDWGKKIEEYSEDQILYACKDVLYLHKIKNELEKILKRENKLE 179

Query: 179 LATSCCNFLMDRAELDLLGWENVDIFSH 206
           LA  C  FL  R  LDL+G    DIF H
Sbjct: 180 LAEQCFKFLETRTALDLVGLTG-DIFEH 206


>gi|153801848|ref|ZP_01956434.1| ribonuclease D [Vibrio cholerae MZO-3]
 gi|153829828|ref|ZP_01982495.1| ribonuclease D [Vibrio cholerae 623-39]
 gi|229515363|ref|ZP_04404823.1| ribonuclease D [Vibrio cholerae TMA 21]
 gi|229528995|ref|ZP_04418385.1| ribonuclease D [Vibrio cholerae 12129(1)]
 gi|124122620|gb|EAY41363.1| ribonuclease D [Vibrio cholerae MZO-3]
 gi|148874687|gb|EDL72822.1| ribonuclease D [Vibrio cholerae 623-39]
 gi|229332769|gb|EEN98255.1| ribonuclease D [Vibrio cholerae 12129(1)]
 gi|229348068|gb|EEO13027.1| ribonuclease D [Vibrio cholerae TMA 21]
          Length = 381

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 13  IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A  
Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216


>gi|161503057|ref|YP_001570169.1| ribonuclease D [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864404|gb|ABX21027.1| hypothetical protein SARI_01122 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 371

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 4   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGADVALIDPL--GITDWSP 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 62  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C 
Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECR 180

Query: 186 FLMDRAE 192
            +  R +
Sbjct: 181 LMQQRRQ 187


>gi|153217090|ref|ZP_01950854.1| ribonuclease D [Vibrio cholerae 1587]
 gi|124113892|gb|EAY32712.1| ribonuclease D [Vibrio cholerae 1587]
          Length = 381

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 13  IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A  
Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216


>gi|323166513|gb|EFZ52276.1| ribonuclease D [Shigella sonnei 53G]
          Length = 371

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C A R   AIA DTE +       +L ++QL  G+    I  +  G  +  
Sbjct: 3   TTDDALASLCEAVRVFPAIAQDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RLMQMRRQ 187


>gi|218548642|ref|YP_002382433.1| ribonuclease D [Escherichia fergusonii ATCC 35469]
 gi|218356183|emb|CAQ88800.1| ribonuclease D [Escherichia fergusonii ATCC 35469]
 gi|324113537|gb|EGC07512.1| ribonuclease D [Escherichia fergusonii B253]
          Length = 375

 Score =  223 bits (570), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  + + C A R   AIA+DTE +       +L ++QL  G+    I  +    ++
Sbjct: 5   LITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLT--IRD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L D    K  H G  D+ V    FG   +P+  T++ +          G    
Sbjct: 63  WSPLKSVLRDPAITKFLHAGSEDLEVFLNKFGEMPQPLIDTQVLAAFC-GRPMSWGFASM 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A  
Sbjct: 122 VEEYSGVILDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMAETEASGWLPAALD 181

Query: 183 CCNFLMDRAE 192
            C  +  R +
Sbjct: 182 ECRLMQMRRQ 191


>gi|188533676|ref|YP_001907473.1| ribonuclease D [Erwinia tasmaniensis Et1/99]
 gi|188028718|emb|CAO96580.1| Ribonuclease D [Erwinia tasmaniensis Et1/99]
          Length = 373

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 4/191 (2%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+      +   C  AR V A+A+DTE +       RL ++QL  G+    I  +     
Sbjct: 4   TMITTNAALSEACQRARQVPALALDTEFVRTRTYYPRLGLIQLYDGETISLIDPLP--IT 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +      +L D+K  K  H G  D+ V  + FGV  +P+  T+I +  +       G   
Sbjct: 62  DWTPFSELLQDQKVIKYLHAGSEDLEVFCHEFGVLPQPMIDTQILAAFS-GRPLSCGFAT 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++   GI + K++  +DW A  LS++Q QYAA+DV +L  +  +   + +  G+   A 
Sbjct: 121 VVESFTGIALDKSESRTDWLARPLSEKQCQYAAADVFYLLPIAGKLVAEAESAGQMAAAL 180

Query: 182 SCCNFLMDRAE 192
             C  L  R  
Sbjct: 181 DECRLLCQRRT 191


>gi|297183461|gb|ADI19592.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0770_37D02]
          Length = 214

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/211 (40%), Positives = 120/211 (56%), Gaps = 6/211 (2%)

Query: 1   MTTIRVHEGDIPAECA--ARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIA 57
           MT I   + DI AE         ++A+DTE  GL  P RD+L +VQ S G+    II+  
Sbjct: 5   MTKIYKFQDDIAAEALKELENHSSLAIDTEGSGLQIPHRDKLSLVQFSTGNNDAYIIQPN 64

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                APN+  +L ++K  KI HY R+DI+ L Y     V+ +F TK+AS+L RTY+  H
Sbjct: 65  RKDYKAPNIKKILENDKITKIGHYLRYDISGLEYFLKCNVKNIFDTKLASKLCRTYSQNH 124

Query: 118 GLKDNLKELLGINISKAQQSSDWSA--DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           GLKD   E  G  + K   SSDW+   D+L+D QLQY ++DV++LH ++ +  + L R  
Sbjct: 125 GLKDLALEFCGKKLDKRLGSSDWNKNLDELTDAQLQYCSNDVIYLHKIKDELYKMLVREN 184

Query: 176 RSDLATSCCNFLMDRAELDLLGWENVDIFSH 206
           R +L  +C  FL  R +LD  G+   DIF H
Sbjct: 185 RLELYENCIKFLKTRIKLDQSGFAE-DIFQH 214


>gi|213019164|ref|ZP_03334971.1| putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995273|gb|EEB55914.1| putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 378

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 10/193 (5%)

Query: 17  ARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A+    IAVDTE +        RL ++Q+S G+ +  I+ +     +   +  ++++ + 
Sbjct: 2   AKDPKFIAVDTEFIRNNLTYYPRLSLIQISYGEKSF-IVDVLVPGIDLSLIKKIMLNREI 60

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-A 134
            K+FH  R DI  L         P+F T++A+     Y +  G    +++  G+ + K  
Sbjct: 61  TKVFHSCRQDIESLLTVLKCVPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGVALDKIK 120

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL- 193
            ++SDW    LS++QL YA +DV+HL+ L      KL+   R          ++D  +  
Sbjct: 121 AKNSDWLKRPLSEDQLDYAVNDVIHLYDLHQILCNKLEENNRMGWFQEEMESIVDVNKYL 180

Query: 194 ----DLLGWENVD 202
               D   W+ + 
Sbjct: 181 HNPKD--AWKRIK 191


>gi|315180685|gb|ADT87599.1| ribonuclease D [Vibrio furnissii NCTC 11218]
          Length = 371

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 4/179 (2%)

Query: 9   GDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            D+   C  AR  D + +DTE +       +L ++QL  G+    I  +A         V
Sbjct: 10  NDLERVCSLARDADVVMLDTEFVRTRTFYPQLGLIQLFDGENLSLIDPLA--MDEMTPFV 67

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+ H    DI V   +FG    P+  T+I +     Y    G      +LL
Sbjct: 68  ELLQDTSVLKVLHACGEDIEVFKTSFGCVPFPMVDTQIMAAFL-GYGLSTGFAALAHDLL 126

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
            + + K++  +DW A  LS +QL+YAA+DV +L  +  Q  EK+ + G  + A      
Sbjct: 127 NVELDKSESRTDWLARPLSQKQLEYAAADVFYLMPMYEQLLEKVTQAGWWEAAQQESEL 185


>gi|149186862|ref|ZP_01865172.1| ribonuclease D [Erythrobacter sp. SD-21]
 gi|148829529|gb|EDL47970.1| ribonuclease D [Erythrobacter sp. SD-21]
          Length = 411

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 12/210 (5%)

Query: 1   MTTIR--VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           M  I   + + D  A    R    D + VDTE +        LC+VQ++  +    I  +
Sbjct: 1   MMKIHDLITDTDTLAAMCERLAKSDFVTVDTEFMRENTYWPELCLVQIANEEEAAAIDPL 60

Query: 57  AAGQKNAPNLVGMLVD-EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           A G    P L  +L D E+  K+FH G  D+ +++   G    P+F T+IA  +  +   
Sbjct: 61  ADGIDLQP-LWDLLCDNEEVLKVFHAGGQDVEIVYNFTGKTPHPIFDTQIA-MMAISQNE 118

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G  + ++  +GI + K  + +DW    L+D Q++YA  DV HL  +     +KL + G
Sbjct: 119 QIGYANLVESWMGITVDKGARFTDWGRRPLTDRQIEYAIGDVTHLSKIFPMILKKLIKTG 178

Query: 176 RSDLATSCCNFLMDRAEL----DLLGWENV 201
           R     +  + L D A      DL  W+ +
Sbjct: 179 RGVWLDAEMDKLADPANYANNADL-AWKRI 207


>gi|262171029|ref|ZP_06038707.1| ribonuclease D [Vibrio mimicus MB-451]
 gi|261892105|gb|EEY38091.1| ribonuclease D [Vibrio mimicus MB-451]
          Length = 381

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 13  IITQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVIDE 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++   G  + A  
Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQ 189

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216


>gi|15641986|ref|NP_231618.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591319|ref|ZP_01678609.1| ribonuclease D [Vibrio cholerae 2740-80]
 gi|147675516|ref|YP_001217510.1| ribonuclease D [Vibrio cholerae O395]
 gi|153819311|ref|ZP_01971978.1| ribonuclease D [Vibrio cholerae NCTC 8457]
 gi|227082111|ref|YP_002810662.1| ribonuclease D [Vibrio cholerae M66-2]
 gi|229507927|ref|ZP_04397432.1| ribonuclease D [Vibrio cholerae BX 330286]
 gi|229511838|ref|ZP_04401317.1| ribonuclease D [Vibrio cholerae B33]
 gi|229518974|ref|ZP_04408417.1| ribonuclease D [Vibrio cholerae RC9]
 gi|229607472|ref|YP_002878120.1| ribonuclease D [Vibrio cholerae MJ-1236]
 gi|254849070|ref|ZP_05238420.1| ribonuclease D [Vibrio cholerae MO10]
 gi|298497984|ref|ZP_07007791.1| ribonuclease D [Vibrio cholerae MAK 757]
 gi|9656525|gb|AAF95132.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121546819|gb|EAX56983.1| ribonuclease D [Vibrio cholerae 2740-80]
 gi|126510131|gb|EAZ72725.1| ribonuclease D [Vibrio cholerae NCTC 8457]
 gi|146317399|gb|ABQ21938.1| ribonuclease D [Vibrio cholerae O395]
 gi|227009999|gb|ACP06211.1| ribonuclease D [Vibrio cholerae M66-2]
 gi|227013881|gb|ACP10091.1| ribonuclease D [Vibrio cholerae O395]
 gi|229343663|gb|EEO08638.1| ribonuclease D [Vibrio cholerae RC9]
 gi|229351803|gb|EEO16744.1| ribonuclease D [Vibrio cholerae B33]
 gi|229355432|gb|EEO20353.1| ribonuclease D [Vibrio cholerae BX 330286]
 gi|229370127|gb|ACQ60550.1| ribonuclease D [Vibrio cholerae MJ-1236]
 gi|254844775|gb|EET23189.1| ribonuclease D [Vibrio cholerae MO10]
 gi|297542317|gb|EFH78367.1| ribonuclease D [Vibrio cholerae MAK 757]
          Length = 381

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 13  IISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A  
Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQ 189

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216


>gi|296446899|ref|ZP_06888835.1| ribonuclease D [Methylosinus trichosporium OB3b]
 gi|296255574|gb|EFH02665.1| ribonuclease D [Methylosinus trichosporium OB3b]
          Length = 388

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 6/200 (3%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
               D+ A CA       + VDTE L       ++C++QL+  +    +  +A G   +P
Sbjct: 5   TSTEDLAAACARLSRHPFVTVDTEFLRETTFWPKVCVIQLASPEEAFAVDTLAEGLDLSP 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               ++ D    K+FH  R D+ +++    +   P+F T++A+ +   + +Q    + +K
Sbjct: 65  -FFELMADASVVKVFHAARQDLEIIWRLARLIPTPLFDTQVAAMVC-GFGDQASYVELVK 122

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            +   ++ K+ + +DWS   LS  Q+ YA +DV HL  +     ++L+R  R D      
Sbjct: 123 AIAKESLDKSSRFTDWSKRPLSVAQIDYAIADVTHLRQIYTHLRQRLERSNRLDWLVDEM 182

Query: 185 NFLMDRAELDL---LGWENV 201
             L      +      WE +
Sbjct: 183 RTLTSPETYEQSPENAWERL 202


>gi|103487237|ref|YP_616798.1| ribonuclease D [Sphingopyxis alaskensis RB2256]
 gi|98977314|gb|ABF53465.1| ribonuclease D [Sphingopyxis alaskensis RB2256]
          Length = 395

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 4/191 (2%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +  D IAVDTE +        LC++Q++  +    I  +A G    P L  ++ +E   K
Sbjct: 21  KDSDFIAVDTEFMRENTFWPELCLIQVADTEHAAAIDPMAQGMDLKPLLDLLVDNEDMLK 80

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +FH G  D+ ++F   G    P+F T+I  ++      Q G  + ++  LG+ + K  + 
Sbjct: 81  VFHAGGQDVEIIFNLTGKTPHPIFDTQI-GQMALGQAEQVGYSNLVEAWLGLQLDKGARF 139

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL-- 195
           +DWS   L   Q+ YA  DV HL  +     +KL R GR          L D A   +  
Sbjct: 140 TDWSRRPLDKRQIDYAIGDVTHLAKIFPMMLDKLIRTGRGHWLDEEMEKLADPANYSVDP 199

Query: 196 -LGWENVDIFS 205
              W+ + I S
Sbjct: 200 DKAWQRIKIPS 210


>gi|323499349|ref|ZP_08104325.1| ribonuclease D [Vibrio sinaloensis DSM 21326]
 gi|323315534|gb|EGA68569.1| ribonuclease D [Vibrio sinaloensis DSM 21326]
          Length = 371

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 13/204 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     ++ A C  AR  D + +DTE +       +L ++QL  G+    I       ++
Sbjct: 5   IVTQTSELVAVCKQARESDVVMLDTEFVRTRTFYPQLGLIQLFDGEHLSLIDP--TELED 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V   +FG    P+  T++ +     +    G    
Sbjct: 63  MTAFVQLLQDTSVLKVLHACGEDLEVFHNSFGCLPYPMVDTQLMAAFL-GHGLSTGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +   L + + K++  +DW A  L+D+QL YAA+DV +L  L  +    +   G  + A  
Sbjct: 122 VDHYLQVELDKSESRTDWLARPLTDKQLDYAAADVFYLWPLYEKLLAAVTEAGWWEAAQQ 181

Query: 183 CCNFL---------MDRAELDLLG 197
             + L          + A LD+ G
Sbjct: 182 ESDLLASKRIKNVDPELAYLDVKG 205


>gi|213865181|ref|ZP_03387300.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 200

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 3/177 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R   AIA+DTE +       +L ++QL  G     I  +  G  +   L  +L D   
Sbjct: 3   AVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGI 60

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K  H G  D+ V    FG    P+  T+I +          G    ++E  G+ + K++
Sbjct: 61  TKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEEYTGVALDKSE 119

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
             +DW A  LS+ Q +YAA+DV +L  +  +   + +  G    A   C  +  R +
Sbjct: 120 SRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAALDECRLMQQRRQ 176


>gi|297579488|ref|ZP_06941416.1| ribonuclease D [Vibrio cholerae RC385]
 gi|297537082|gb|EFH75915.1| ribonuclease D [Vibrio cholerae RC385]
          Length = 381

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 13  IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A  
Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216


>gi|182678372|ref|YP_001832518.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634255|gb|ACB95029.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 388

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           MT I   + ++   C        + VDTE L       +LC+VQL+  +  V +  +A G
Sbjct: 1   MTLIASTQ-ELRDVCQRLARQPFVTVDTEFLRETTFWPKLCVVQLASTEEAVAVDALAEG 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
              +P L  ++ +E   K+FH  R D+ +++    +   P+F T++A+ +   + +Q   
Sbjct: 60  LDLSP-LFELMANEATVKVFHAARQDLEIIWNLAKLIPTPLFDTQVAAMVC-GFGDQISY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            D ++ +  +++ K+ + +DWS   LS  Q+ YA +DV +L  + L    KL+   R   
Sbjct: 118 GDLVQTVTRVSLDKSSRFTDWSRRPLSPAQVDYAIADVTYLRDIYLYLRRKLETSSRLAW 177

Query: 180 ATSCCNFLMDRAELDLL---GWENV 201
            +     L   +  +      WE +
Sbjct: 178 LSDEMALLSSPSTYEQAPETAWERL 202


>gi|237731840|ref|ZP_04562321.1| ribonuclease D [Citrobacter sp. 30_2]
 gi|226907379|gb|EEH93297.1| ribonuclease D [Citrobacter sp. 30_2]
          Length = 371

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 7/200 (3%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  +   C A R   AIA+DTE +       +L ++QL  G     I     G  +  
Sbjct: 3   TTDDALATLCEAVREFPAIALDTEFVRTRTYYPQLGLIQLFDGKHVALIDP--QGITDWS 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K  H G  D+ V    FG   +P+  T+I +          G    ++
Sbjct: 61  PLRDILRDTAITKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFC-GRPMSWGFAAMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  +   + +  G    A   C
Sbjct: 120 EFTGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPITTKLMVETEASGWLPAALDEC 179

Query: 185 NFLMDRAELDLL---GWENV 201
             +  R +  L     W ++
Sbjct: 180 RLMQQRRQEVLAPEDAWRDI 199


>gi|121729927|ref|ZP_01682350.1| ribonuclease D [Vibrio cholerae V52]
 gi|121628334|gb|EAX60840.1| ribonuclease D [Vibrio cholerae V52]
          Length = 350

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 5   IISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 63  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A  
Sbjct: 122 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQ 181

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 182 ESELQVAKRTKVSNPELAYLDIKGAWQ 208


>gi|258626516|ref|ZP_05721356.1| ribonuclease D [Vibrio mimicus VM603]
 gi|258581227|gb|EEW06136.1| ribonuclease D [Vibrio mimicus VM603]
          Length = 385

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 17  IITQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVIDE 74

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 75  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 133

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++   G  + A  
Sbjct: 134 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQ 193

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 194 ESELQVAKRTKVSNPELAYLDIKGAWQ 220


>gi|283832800|ref|ZP_06352541.1| ribonuclease D [Citrobacter youngae ATCC 29220]
 gi|291072487|gb|EFE10596.1| ribonuclease D [Citrobacter youngae ATCC 29220]
          Length = 371

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 7/195 (3%)

Query: 11  IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   C A R   AIA+DTE +       +L ++QL  G     I     G  +   L  +
Sbjct: 8   LATLCEAVREFPAIALDTEFVRTRTYYPQLGLIQLFDGKHVALIDP--QGITDWSPLRAI 65

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K  H G  D+ V    FG   +P+  T+I +          G    ++E  G+
Sbjct: 66  LRDTAITKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFC-GRPLSWGFAAMVEEFTGV 124

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K++  +DW A  L++ Q +YAA+DV +L  +      + +  G    A   C  +  
Sbjct: 125 ALDKSESRTDWLARPLTERQCEYAAADVWYLLPITTTLMAETEASGWLPAALDECRLMQQ 184

Query: 190 RAELDLL---GWENV 201
           R +  L     W ++
Sbjct: 185 RRQEILAPEDAWRDI 199


>gi|85373619|ref|YP_457681.1| ribonuclease D [Erythrobacter litoralis HTCC2594]
 gi|84786702|gb|ABC62884.1| ribonuclease D [Erythrobacter litoralis HTCC2594]
          Length = 401

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 2/185 (1%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   C      + + +DTE +        LC++Q+   +    +  +A G    P L  M
Sbjct: 13  LAELCDRLAQHEFVCIDTEFMRENTYWPELCLIQIGNEEEAAAVDPLADGIDLQPLLDLM 72

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             +E   K+FH G  D+ +++   G    P+F T+IA  +  + + Q G  + ++  L  
Sbjct: 73  CENEDILKVFHAGGQDVEIVYNLTGKTPFPIFDTQIA-MMAISQSEQIGYANLVESWLNK 131

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            I K  + +DWS   L+D Q++YA  DV +L  +  +   KL + GR     +  + L D
Sbjct: 132 TIDKGARFTDWSRRPLTDRQIEYAIGDVTYLAKIFPKILNKLVKTGRGAWLNAEMDKLAD 191

Query: 190 RAELD 194
            A  +
Sbjct: 192 PANYE 196


>gi|254562078|ref|YP_003069173.1| ribonuclease D [Methylobacterium extorquens DM4]
 gi|254269356|emb|CAX25322.1| Ribonuclease D (RNase D) [Methylobacterium extorquens DM4]
          Length = 384

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 1/193 (0%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M  I   +    A         + VDTE +       +LC++Q++  DG   ++   A  
Sbjct: 1   MELISATQALSDACTQFAAQPFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKD 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +      ++ DE   K+FH  R D+ +++   G+  +P F T++A+ +   Y +    +
Sbjct: 61  LDLKPFFDLMADESTVKVFHSARQDLEIIWLLGGLLPQPFFDTQVAAMVC-GYGDSVSYE 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + ++    I K+ + +DWS   LS+ QL YA SDV HL  +      +L    R    
Sbjct: 120 QLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWL 179

Query: 181 TSCCNFLMDRAEL 193
                 L      
Sbjct: 180 DEEMAVLTSPETY 192


>gi|255745267|ref|ZP_05419216.1| ribonuclease D [Vibrio cholera CIRS 101]
 gi|262155992|ref|ZP_06029112.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
 gi|255737097|gb|EET92493.1| ribonuclease D [Vibrio cholera CIRS 101]
 gi|262030170|gb|EEY48814.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
          Length = 373

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 13/204 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 5   IISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 63  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A  
Sbjct: 122 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQ 181

Query: 183 CCNFL---------MDRAELDLLG 197
                          + A LD+ G
Sbjct: 182 ESELQVAKRTKVSNPELAYLDIKG 205


>gi|259908266|ref|YP_002648622.1| ribonuclease D [Erwinia pyrifoliae Ep1/96]
 gi|224963888|emb|CAX55391.1| Ribonuclease D [Erwinia pyrifoliae Ep1/96]
 gi|283478197|emb|CAY74113.1| rnd [Erwinia pyrifoliae DSM 12163]
          Length = 369

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
                +   C  AR V A+A+DTE +       RL ++QL  G+    I  +     +  
Sbjct: 3   TTNAALSDVCLRARRVPALALDTEFVRTRTYYPRLGLIQLYDGETISLIDPLP--ITDWT 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L+D++  K  H G  D+ V  + FGV  +P+  T+I +  +       G    ++
Sbjct: 61  PFRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFS-GRPLSCGFATIVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
              GI + K++  +DW A  LS++Q +YAA+DV +L  +  +  ++ +  G+   A   C
Sbjct: 120 SFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIASKLVDETEAAGQMAAALDEC 179

Query: 185 NFLMDRAE 192
             L  R  
Sbjct: 180 RLLCQRRT 187


>gi|260598272|ref|YP_003210843.1| ribonuclease D [Cronobacter turicensis z3032]
 gi|260217449|emb|CBA31565.1| Ribonuclease D [Cronobacter turicensis z3032]
          Length = 409

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 5/188 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I  ++  + A C  AR   A+A+DTE +       +L ++QL  G+    I  +      
Sbjct: 42  ITTNDA-LAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLT--ITE 98

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L D+   K  H G  D+ V    FG+   P   T++ +     +    G    
Sbjct: 99  WAPFQALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFV-GHPLSCGFATL 157

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++   G+ + K++  +DW A  L++ Q  YAA+DV +L  +  +  E+++  G    A +
Sbjct: 158 VEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAIN 217

Query: 183 CCNFLMDR 190
            C  +  R
Sbjct: 218 ECRLMTQR 225


>gi|310767817|gb|ADP12767.1| ribonuclease D [Erwinia sp. Ejp617]
          Length = 369

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
                +   C  AR V A+A+DTE +       RL ++QL  G+    I  +     +  
Sbjct: 3   TTNAALSDVCLRARRVPALALDTEFVRTRTYYPRLGLIQLYDGETISLIDPLP--ITDWT 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L+D++  K  H G  D+ V  + FGV  +P+  T+I +  +       G    ++
Sbjct: 61  PFRDLLLDQQVIKYLHAGSEDLEVFQHEFGVLPQPMIDTQILAAFS-GRPLSCGFATIVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
              GI + K++  +DW A  LS++Q +YAA+DV +L  +  +  ++ +  G+   A   C
Sbjct: 120 SFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIASKLVDETEAAGQMAAALDEC 179

Query: 185 NFLMDRAE 192
             L  R  
Sbjct: 180 RLLCQRRT 187


>gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
           13280]
 gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
           13280]
          Length = 377

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 4/188 (2%)

Query: 7   HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
              D+ A C  AR   AIA+DTE L       +LC+VQ++  D  V I  +A    +   
Sbjct: 5   TNEDLTAFCNRARAFSAIAIDTEFLREKTYHAKLCLVQVATPDECVVIDPLA--IDDLGP 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  ++ D    K+FH    D+ VL +  G    P+F T++A+        Q    + +  
Sbjct: 63  LAELMTDVDTLKVFHACSQDMEVLCHALGSVPAPIFDTQVAAGFLGERA-QCSYHNLVST 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+++ K +  +DWS   LS +Q++YA  DV +L         KL  LGR+        
Sbjct: 122 FCGVSLPKTESLTDWSRRPLSPKQIEYALDDVRYLIDAYRVIESKLHSLGRTAWVRDEIR 181

Query: 186 FLMDRAEL 193
            L D A  
Sbjct: 182 PLADPAHY 189


>gi|271500522|ref|YP_003333547.1| ribonuclease D [Dickeya dadantii Ech586]
 gi|270344077|gb|ACZ76842.1| ribonuclease D [Dickeya dadantii Ech586]
          Length = 373

 Score =  221 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 6/197 (3%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   EG + A CA A  V  +A+DTE +       +L ++QL  GD    I  +A    N
Sbjct: 6   ITTDEG-LSAVCALACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLSLIDPLAIS--N 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L + +  K  H G  D+ V    FG    P   T+I +   R     +G    
Sbjct: 63  WEPFRALLQNPQVTKYLHAGSEDLEVFLNAFGCLPSPFIDTQILAAF-RGKPLSYGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + +   I + K++  +DW A  LS++Q QYAA+DV +L  +     E+ +  G  + A  
Sbjct: 122 VADYRQIVLDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARVLVEETRLAGWMEAALD 181

Query: 183 CCNFLMDRAELDLLGWE 199
            C  L  R + D+L  E
Sbjct: 182 ECQLLCQRRQ-DVLAPE 197


>gi|269215504|ref|ZP_06159358.1| ribonuclease D [Slackia exigua ATCC 700122]
 gi|269130991|gb|EEZ62066.1| ribonuclease D [Slackia exigua ATCC 700122]
          Length = 399

 Score =  221 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 4/194 (2%)

Query: 1   MTTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M         +    A AR  D +A+DTE L       +LC++QL   + +V +  +   
Sbjct: 1   MPLYITDTKQLEEFVAFARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKV- 59

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +   L  ++VD    K+FH    D+ +LF+   V   P+F T++A+ L    T Q G 
Sbjct: 60  -HDLSPLRDLMVDTSVVKVFHAATQDLDILFHELDVMPDPIFDTQVAAALL-GQTVQVGY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              +    G+ + KA   +DW+   LS  Q+ YA  DVV+L  +  Q TE+L+ LGR+  
Sbjct: 118 GTLVLNECGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIYRQLTERLEALGRASW 177

Query: 180 ATSCCNFLMDRAEL 193
                  L+D +  
Sbjct: 178 LEHDFAELVDPSRY 191


>gi|291617685|ref|YP_003520427.1| Rnd [Pantoea ananatis LMG 20103]
 gi|291152715|gb|ADD77299.1| Rnd [Pantoea ananatis LMG 20103]
          Length = 373

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 5/195 (2%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           ++  +   C  AR   A+A+DTE +       +L ++QL  G+  V I  +    ++   
Sbjct: 8   NDDRLAEVCNKARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPV--RDWSP 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
            + +L D +  K  H G  D+ V  + F V  +P+  T+I +  +       G    +  
Sbjct: 66  FIELLTDTRVTKFLHAGGEDLEVFLHRFAVLPQPMIDTQILAAFS-GQPLSWGFASMVAH 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
              + + K++  +DW A  L++ Q QYAA+DV +L  +  Q  +++++ G    A S C 
Sbjct: 125 FTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAHQLMQQVEQAGNMAAALSECE 184

Query: 186 FLMDRAELDLLGWEN 200
            L  R  LD L  E+
Sbjct: 185 NLCQR-RLDSLAPED 198


>gi|296284765|ref|ZP_06862763.1| ribonuclease D [Citromicrobium bathyomarinum JL354]
          Length = 391

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 6/202 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   +  +   C      D + VDTE +        LC+VQ+        I  +A G   
Sbjct: 7   ITTTDA-LADLCDRLGKGDFVCVDTEFMRENTYWPELCLVQIGDEHEAAAIDPLADGIDL 65

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            P L  +  +E   KIFH G  D+ + +   G    P+F T+IA  +  + + Q G  + 
Sbjct: 66  KPLLDLLTENEDVLKIFHAGSQDVEIFYNLTGKTPHPIFDTQIA-MMAISQSEQIGYANL 124

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++  L   I K  + +DWS   L+D QL+YA  DV +L  +  +  +KL +  R     +
Sbjct: 125 VEHWLDKTIDKGARFTDWSRRPLTDRQLEYAIGDVTYLAKIFPRILKKLMKTDRGMWLNA 184

Query: 183 CCNFLMDRAELDL---LGWENV 201
               L D     +     W+ +
Sbjct: 185 EMEKLADPENYAIEPDKAWKRI 206


>gi|90411623|ref|ZP_01219633.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK]
 gi|90327513|gb|EAS43866.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK]
          Length = 374

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I      +   C  AR    + +DTE +       +L ++Q+  GD  V I  I    ++
Sbjct: 5   IITTTQRLDTICDHARTYSVVMLDTEFVRTRTLYPKLGLIQMFDGDNLVLIDPIE--IED 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L D+   K+ H    D+ V  +  G    P+  T++ +     +    G    
Sbjct: 63  LTPFWDLLRDQSVIKVLHACGEDLEVFQHHAGCLPTPMIDTQLMAAFL-GHGVSAGFGSL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + E +G+++ K +  ++W A  L+D+QL YAA+DV +L  L     EK++  G  D    
Sbjct: 122 VSEYVGVDLEKGEARTNWLARPLTDKQLDYAAADVFYLLPLYETLLEKVKAKGWMDALEL 181

Query: 183 CCNFLMDRAE 192
            C  LM +  
Sbjct: 182 ECTALMQKRT 191


>gi|24215616|ref|NP_713097.1| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45657025|ref|YP_001111.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24196771|gb|AAN50115.1|AE011455_9 ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45600262|gb|AAS69748.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 212

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 86/209 (41%), Positives = 120/209 (57%), Gaps = 6/209 (2%)

Query: 2   TTIR--VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
           +TI+  +  GD+  +    Y   D +AVD E +GL PRRDRLC+VQ+      V +++I 
Sbjct: 6   STIKPELFPGDLSEQRFEEYKLDDRLAVDCEMMGLNPRRDRLCVVQICDSSNNVSLVQIL 65

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
             QK AP L  +  + +  KIFH+ R D   L Y  G+ ++ VFCTKIAS+L RTYT++H
Sbjct: 66  PDQKEAPLLKSLFENPEIVKIFHFARMDSLFLRYRLGINLQNVFCTKIASKLARTYTDKH 125

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           GLKD +KE     I K  QSSDW    L+ +Q++YA+ DV +L +L  + TE L R GR 
Sbjct: 126 GLKDLIKEFYDEVIDKKNQSSDWGKKILTKDQIEYASGDVKYLISLEQKLTEILVREGRD 185

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA      L    ++D L  E   +F H
Sbjct: 186 SLAREAFRCLPVFNQIDWL--EMPTLFEH 212


>gi|258621252|ref|ZP_05716286.1| ribonuclease D [Vibrio mimicus VM573]
 gi|258586640|gb|EEW11355.1| ribonuclease D [Vibrio mimicus VM573]
          Length = 373

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 5   IITQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVINE 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 63  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++   G  + A  
Sbjct: 122 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQ 181

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 182 ESELQVAKRTKVSNPELAYLDIKGAWQ 208


>gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2]
 gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2]
          Length = 377

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 5/191 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I  HE  + A C AAR    +A+DTE L       RLC+VQ++  + +  +  +    ++
Sbjct: 3   ISTHE-QLAALCDAARSFSIVAIDTEFLRERTYHPRLCLVQVATPEVSALVDPLE--IED 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  ++ DE   KIFH    D+ VL     V   P+F T++A+        Q      
Sbjct: 60  LSPLAALMADEGTRKIFHACSQDMEVLLNALDVLPNPIFDTQVAAAFLGERV-QMSYDGL 118

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +K   G+++ K    +DWS   L+ EQ+ YA  DV +L        E+L++ GR   A  
Sbjct: 119 VKAFCGVSLPKTASLTDWSHRPLTAEQMDYAEDDVRYLICAYEVMAERLEQRGRMSWALD 178

Query: 183 CCNFLMDRAEL 193
               L D +  
Sbjct: 179 EMRPLADESHY 189


>gi|229523996|ref|ZP_04413401.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
 gi|229337577|gb|EEO02594.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
          Length = 381

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 13  IISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMLDGENLSLIDP--TVLDE 70

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 71  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 129

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A  
Sbjct: 130 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQ 189

Query: 183 CCNFL---------MDRAELDLLG-WE 199
                          + A LD+ G W+
Sbjct: 190 ESELQVAKRTKVSNPELAYLDIKGAWQ 216


>gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
 gi|210159428|gb|EEA90399.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
          Length = 377

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 5/191 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I  ++ D+ A C  AR   AIA+DTE L       +LC+VQ++  D  V I  +     +
Sbjct: 3   ISTYD-DLSAFCGRARCHVAIAIDTEFLRERTYHAKLCLVQVATPDECVVIDPLT--IDD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  ++ D    K+FH    D+ VL +T GV   P+F T++A+        Q    + 
Sbjct: 60  LSPLAELMADVDTLKVFHACSQDMEVLVHTLGVCPAPIFDTQVAAGFLGERA-QCSYHNL 118

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +    G+++ K +  +DWS   LS +Q++YA  DV +L         KL  LGR+     
Sbjct: 119 VHSFCGVSLPKTESLTDWSRRPLSPQQIEYAVDDVRYLIDAYRVIESKLHSLGRTAWVRD 178

Query: 183 CCNFLMDRAEL 193
               L D A  
Sbjct: 179 EIRPLADPAHY 189


>gi|116327594|ref|YP_797314.1| ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331795|ref|YP_801513.1| ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120338|gb|ABJ78381.1| Ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125484|gb|ABJ76755.1| Ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 212

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/209 (41%), Positives = 119/209 (56%), Gaps = 6/209 (2%)

Query: 2   TTIR--VHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
           +TI+  +  GD+  +    Y   D +AVD E +GL PRRDRLC+VQ+      V +++I 
Sbjct: 6   STIKPELFLGDLSEKRLEEYKADDRLAVDCEMMGLNPRRDRLCVVQICDSSNNVSLVQIL 65

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
             QK AP L  +  + +  KIFH+ R D   L Y  G+ +  VFCTKIAS+L RTYT++H
Sbjct: 66  PDQKEAPLLKSLFENPEIVKIFHFARMDSLFLRYRLGISLENVFCTKIASKLARTYTDKH 125

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           GLKD +KE     I K  QSSDW    L+ +Q++YA+ DV +L +L  + TE L R GR 
Sbjct: 126 GLKDLIKEFYDEVIDKKNQSSDWGKKILTKDQIEYASGDVKYLISLEQKLTEILVREGRD 185

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIFSH 206
            LA      L    ++D L  E   +F H
Sbjct: 186 SLAREAFRCLPVFNQIDWL--EMPSLFEH 212


>gi|257063921|ref|YP_003143593.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
 gi|256791574|gb|ACV22244.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
          Length = 392

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +LC++QL+  +  V +  +     +   L  +  DE   
Sbjct: 15  ARAHKVLAIDTEFMREKTYWPKLCLIQLATPERAVAVDPLR--LHDLSALNVLFQDENIL 72

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH  R D+ ++    G    P+F T+IA+ L   +T Q G    +   LG+++ KA  
Sbjct: 73  KLFHASRQDLEIINIEMGCLPAPIFDTQIAAALL-GHTTQIGYGPLVMNELGVHLKKADS 131

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
            +DWS   L+  QLQYA  DV++L  L    + KL++L R D   S    L D +  +
Sbjct: 132 YTDWSRRPLTKSQLQYALDDVIYLPKLYDSMSRKLKKLNRMDWLASDFRDLSDPSNYE 189


>gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
 gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
          Length = 392

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 4/191 (2%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I   E       +    D IA+DTE L       +LC+VQ +  D    I  +   + + 
Sbjct: 7   IETPEALQAFLDSIAGTDWIALDTEFLREKTYYPQLCLVQAATLDQLACIDPL---RLDI 63

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  D    K+FH    D+ +L+   G    PVF T+IA+ +   Y  Q G  + +
Sbjct: 64  QQLAPLFRDPGITKVFHAASQDMELLYRELGFVPSPVFDTQIAASML-GYGEQVGYANLV 122

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           K +L  ++ K+Q  +DWS   LS EQ++YAA DV HL  L  +   +L    R       
Sbjct: 123 KTVLERDLDKSQTRTDWSRRPLSAEQIRYAADDVRHLATLFNRLLHELDTHDRMHWLRPE 182

Query: 184 CNFLMDRAELD 194
              L + A  +
Sbjct: 183 MEALSNPALYE 193


>gi|149191139|ref|ZP_01869398.1| ribonuclease D [Vibrio shilonii AK1]
 gi|148835067|gb|EDL52045.1| ribonuclease D [Vibrio shilonii AK1]
          Length = 289

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR  D + +DTE + +     +L ++QL  G+    I  +     +    + +L D    
Sbjct: 19  ARESDVVMLDTEFVRIRTFYPKLGLIQLYDGEQLSLIDPLTIS--DFTPFIELLQDASVL 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V   +FG    P+  T+I +     +    G    + E LG+ + K++ 
Sbjct: 77  KVLHACGEDLEVFVNSFGCMPFPMVDTQIMAAFL-GHGLSTGFAALVDEYLGVELDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL--------- 187
            +DW A  L+D+QL YAA+DV +L  L  +   +++     D A    + L         
Sbjct: 136 RADWVARPLTDKQLDYAAADVYYLWPLYFKLFAQVEAKDWWDAAQQESDLLMQKRGKTPN 195

Query: 188 MDRAELDLLG 197
            D A LD+ G
Sbjct: 196 PDSAYLDIKG 205


>gi|90580077|ref|ZP_01235885.1| hypothetical ribonuclease D [Vibrio angustum S14]
 gi|90438962|gb|EAS64145.1| hypothetical ribonuclease D [Vibrio angustum S14]
          Length = 375

 Score =  220 bits (562), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 4/189 (2%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            I      +   C  AR   A+ +DTE +       RL ++QL  G+    I  +    +
Sbjct: 4   DIITTTEQLQQRCDSARTHTAVMLDTEFVRTRTLYPRLGLIQLFDGEQLSLIDPLEV--E 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +   L  +L D+   K+ H    D+ V  +  G    P+F T++ +     +    G   
Sbjct: 62  DMEPLWALLRDQSVIKVLHACGEDLEVFQHHAGCLPTPMFDTQLMAAFL-GHGISTGFGT 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            +KE +G+ + K +  ++W A  L+++QL YAA+DV +L  L      K++  G  +   
Sbjct: 121 LVKEYVGVELDKGEARTNWLARPLTEKQLDYAAADVYYLKPLFESLLAKVEERGYMEALQ 180

Query: 182 SCCNFLMDR 190
             C  +M R
Sbjct: 181 QECESVMHR 189


>gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H]
 gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H]
          Length = 396

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 2/176 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    + +DTE +        LC+VQL+  +  V I  +A G   AP L  +L      
Sbjct: 27  LQNEPFVTIDTEFVRERTYWPELCLVQLAGTEDVVLIDTLAPGIDLAP-LGALLAKPDCT 85

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH  R D+ +  + F      VF T++A+ +   + +Q G    +  + G +I KA +
Sbjct: 86  KVFHAARQDLEIFLHIFDRLPASVFDTQVAAMVA-GFGDQVGYDSLVGAITGRSIDKAHR 144

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            SDWSA  LS  Q+ YAA+DV HL  +     ++L    R   A S    L +   
Sbjct: 145 FSDWSARPLSKAQIAYAATDVTHLRTVYDALRKQLAEQDRLHWADSEQAILTEEKT 200


>gi|307256641|ref|ZP_07538420.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306864689|gb|EFM96593.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 371

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 8/194 (4%)

Query: 4   IRVHEGDIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           I  H  D   +       A    A+A+DTE +       +L ++QL  GD    I     
Sbjct: 5   IHYHWIDTDEKLKTVCENACRKSAVALDTEFIRTRSYYPKLGLIQLFDGDTVSLIDP--N 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              +    +G+L  +   K+ H    D+ V  + F     P+  T+I +          G
Sbjct: 63  PISDFSPFIGLLTCQNVVKVLHACSEDLEVFQHLFKQLPTPLADTQIMAGFAGG-GISLG 121

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               +   L + + K    +DW A  L++EQLQYAA+DV +L  +  +    L      +
Sbjct: 122 FAKLVAHYLNVELDKGASRTDWLARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQN 181

Query: 179 LATSCCNFLMDRAE 192
                C +L+ + E
Sbjct: 182 AVEQECRYLLSKRE 195


>gi|261868337|ref|YP_003256259.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413669|gb|ACX83040.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 385

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 4/189 (2%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           ++   + ++   C AAR   A+A+DTE + +     +L ++Q+  GD    I  +    +
Sbjct: 15  SVVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDRVALIDPLP--IQ 72

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +    + +L D    KI H    D+ V  + F    RP+  T++ +     +    G   
Sbjct: 73  DFSPFIKLLADTNLVKILHACSEDLDVFQHYFQQLPRPMCDTQVMAHFL-GFAGSTGFAT 131

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++    I I K    +DW A  LSD QLQYAA+DV +L  L  Q  ++L +     +  
Sbjct: 132 LVQHYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYEQMQQQLTQTEWQSVVE 191

Query: 182 SCCNFLMDR 190
           + C FL+++
Sbjct: 192 NECEFLLNK 200


>gi|165976032|ref|YP_001651625.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303249665|ref|ZP_07335870.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307245476|ref|ZP_07527563.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307252170|ref|ZP_07534068.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307254430|ref|ZP_07536267.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258890|ref|ZP_07540621.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|165876133|gb|ABY69181.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302651477|gb|EFL81628.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306853535|gb|EFM85753.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306860314|gb|EFM92329.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306862571|gb|EFM94528.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866914|gb|EFM98771.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 371

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 8/194 (4%)

Query: 4   IRVHEGDIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           I  H  D   +       A    A+A+DTE +       +L ++QL  GD    I     
Sbjct: 5   IHYHWIDTDEKLKTVCENACRKSAVALDTEFIRTRSYYPKLGLIQLFDGDTVSLIDP--N 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              +    +G+L  +   K+ H    D+ V  + F     P+  T+I +          G
Sbjct: 63  PISDFSPFIGLLTCQNVVKVLHACSEDLEVFQHLFKQLPTPLADTQIMAGFAGG-GISLG 121

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               +   L + + K    +DW A  L++EQLQYAA+DV +L  +  +    L      +
Sbjct: 122 FAKLVAHYLNVELDKGASRTDWLARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQN 181

Query: 179 LATSCCNFLMDRAE 192
                C +L+ + E
Sbjct: 182 AVEQECRYLLSKRE 195


>gi|32035264|ref|ZP_00135282.1| COG0349: Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208098|ref|YP_001053323.1| ribonuclease D [Actinobacillus pleuropneumoniae L20]
 gi|190149931|ref|YP_001968456.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|307249819|ref|ZP_07531795.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307261076|ref|ZP_07542755.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307263258|ref|ZP_07544876.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|126096890|gb|ABN73718.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|189915062|gb|ACE61314.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306858121|gb|EFM90201.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306869208|gb|EFN01006.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306871320|gb|EFN03046.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 371

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 8/194 (4%)

Query: 4   IRVHEGDIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           I  H  D   +       A    A+A+DTE +       +L ++QL  GD    I     
Sbjct: 5   IHYHWIDTDEKLKTVCENACRKSAVALDTEFIRTRSYYPKLGLIQLFDGDTVSLIDP--N 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              +    +G+L  +   K+ H    D+ V  + F     P+  T+I +          G
Sbjct: 63  SISDFSPFIGLLTCQNVVKVLHACSEDLEVFQHLFKQLPTPLADTQIMAGFAGG-GISLG 121

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               +   L + + K    +DW A  L++EQLQYAA+DV +L  +  +    L      +
Sbjct: 122 FAKLVAHYLNVELDKGASRTDWLARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQN 181

Query: 179 LATSCCNFLMDRAE 192
                C +L+ + E
Sbjct: 182 AVEQECRYLLSKRE 195


>gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1]
 gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1]
          Length = 381

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 4/188 (2%)

Query: 7   HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           ++ ++ A    A +   +A+DTE L       +LC++QL+  D T  +   A    +   
Sbjct: 5   NQENLAAFAERAMHSSVLAIDTEFLREKTYYAKLCLIQLATDDETAIVDPFAV--DDLKV 62

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L +E   K+FH G  D+ +L    GV   P+F T++A+ L   +T Q G    +  
Sbjct: 63  LAPVLRNENVMKLFHAGNQDLEILLREVGVLPHPLFDTQVAAALL-GHTQQIGYAALVHA 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
             G+ + K    +DWS   LSD QL+YAA DVV+L  +  +   +L  LGR         
Sbjct: 122 ECGVTLKKIDSFTDWSRRPLSDSQLEYAADDVVYLPRMYERMRAQLVELGRLSWLDRDFE 181

Query: 186 FLMDRAEL 193
            L D A  
Sbjct: 182 DLADPARY 189


>gi|118340523|gb|ABK80573.1| putative ribonuclease D [uncultured marine Nitrospinaceae
           bacterium]
          Length = 386

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 14/188 (7%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +  D + VDTE +       R  ++Q+  G+    I  IA    +   L+ +L D  + K
Sbjct: 17  QSADVLVVDTEFVRERTYFHRTGLIQVGGGEHFAAIDPIA--LPDMTPLLELLKDPTKVK 74

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +FH  R D+ +L    G  + P+F T+IA+ L   +  Q      + + LG  I K++  
Sbjct: 75  VFHAARQDLEILVRFCGQVIPPIFDTQIAAALV-GWGTQISFAKIVYKALGKKIHKSETY 133

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           +DW    LSD Q++YA  DV +L  +  +  E+L+++GR D                +  
Sbjct: 134 TDWCRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKKMGRLDWVQGE-----------VNA 182

Query: 198 WENVDIFS 205
           WE+   F+
Sbjct: 183 WEDPKTFA 190


>gi|56551610|ref|YP_162449.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761264|ref|ZP_04759352.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260752797|ref|YP_003225690.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56543184|gb|AAV89338.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374171|gb|EER63668.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552160|gb|ACV75106.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 390

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 2/184 (1%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           + A C+     D IA+DTE +        LC++Q++       I  +A G    P    +
Sbjct: 13  LAALCSRLSRADFIAIDTEFIRENSYWPELCLIQIADDKEAAAIDPLAPGLDMTPLTDLL 72

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           + +E   K+FH G  D+ ++ +  G    P+F T+IA+ +      Q G  + ++  L I
Sbjct: 73  VNNEDILKVFHAGGQDLEIILHHTGKMPFPLFDTQIAA-MALGVGEQVGYSNLVERYLSI 131

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K  + +DWS   L   QL YA +DV HL  L     ++L+  GR          L D
Sbjct: 132 KLDKGARFTDWSHRPLDRRQLDYAIADVTHLATLFPMLLKELRDKGRGAWLDQEMERLAD 191

Query: 190 RAEL 193
            ++ 
Sbjct: 192 PSQY 195


>gi|254361720|ref|ZP_04977856.1| ribonuclease D [Mannheimia haemolytica PHL213]
 gi|261492043|ref|ZP_05988618.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495020|ref|ZP_05991488.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153093246|gb|EDN74252.1| ribonuclease D [Mannheimia haemolytica PHL213]
 gi|261309336|gb|EEY10571.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312326|gb|EEY13454.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 372

 Score =  219 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 4/187 (2%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
               + A C  AR    +A+DTE +        L ++QL  G     I        +   
Sbjct: 12  TNEQLEAVCEQARKTKVVALDTEFIRTRTYYPILGLIQLFDGQQVSLIDP--NTISDFSP 69

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
            V +L D+   K+ H    D+ V  Y F     P+  T++ +          G    +  
Sbjct: 70  FVSLLADKNIIKVLHACSEDLEVFEYQFKQLPEPMLDTQVMAAFA-GIGISMGFAKLVSH 128

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
            L I + K    +DW A  LS EQLQYAA+DV +L  +  +  + L +          C 
Sbjct: 129 YLNIELDKGASRTDWLARPLSAEQLQYAAADVWYLLPVYEKLAQALTKSTWQSAVAEECV 188

Query: 186 FLMDRAE 192
            L+ +A+
Sbjct: 189 ALLKKAK 195


>gi|329296338|ref|ZP_08253674.1| ribonuclease D [Plautia stali symbiont]
          Length = 373

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 5/199 (2%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+  H   + A C  AR   A+A+DTE +       +L ++QL  G+  V I  +     
Sbjct: 4   TLIDHNDQLAAVCQQARQHRAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLTIS-- 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +    + +L D +  K  H G  D+ V  + FG    P+  T+I +          G   
Sbjct: 62  DWAPFIALLQDRQLTKFLHAGGEDLEVFLHRFGCLPEPMIDTQILAAFA-GQPLSWGFAA 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            +     I + K++  +DW A  L++ Q QYAA+DV +L  +  Q   + +  G    A 
Sbjct: 121 MVNHFNQIELDKSEARTDWLARPLTERQCQYAAADVAYLLPIAHQLVAQTEAAGNMAAAL 180

Query: 182 SCCNFLMDRAELDLLGWEN 200
           S C  L  R  LD+L  E 
Sbjct: 181 SECATLCQR-RLDVLQPEE 198


>gi|251792786|ref|YP_003007512.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
 gi|247534179|gb|ACS97425.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
          Length = 385

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 5/192 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  +   CA A    A+A+DTE +       +L ++QL  GD    I       ++
Sbjct: 16  LITEDESLAEVCALAGQQSAVALDTEFVRTRTFYPKLGLIQLYAGDEVALIDP--TTIQD 73

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               + +L DE+  K+ H    D+ V  + F    +P+  T++ +     + N  G    
Sbjct: 74  FSPFIALLADERVTKVLHASGEDLEVFQHYFQQLPQPMCDTQVVANFL-GFANSPGFATL 132

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +K    I I K    +DW A  LSD QLQYAA+DV +L  L  Q   +L +        +
Sbjct: 133 VKHYFQIEIDKGASCTDWLARPLSDTQLQYAAADVWYLLPLYQQMKAQLAQTEWQSAVEN 192

Query: 183 CCNFLMD-RAEL 193
            C FL++ RA+ 
Sbjct: 193 ECEFLLNKRAQY 204


>gi|317048442|ref|YP_004116090.1| ribonuclease D [Pantoea sp. At-9b]
 gi|316950059|gb|ADU69534.1| ribonuclease D [Pantoea sp. At-9b]
          Length = 373

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 6/202 (2%)

Query: 1   MTTIRVHEGD-IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M    + + D + A C  AR   A+A+DTE +       +L ++QL  G+  V I  +  
Sbjct: 1   MNYSLIDQNDQLAAVCDKARQHSAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPL-- 58

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              +    V +L D +  K  H G  D+ V  + FG    P+  T+I +          G
Sbjct: 59  NISDWAPFVALLRDTQVTKFLHAGGEDLEVFLHRFGCLPDPMVDTQILAAFA-GQPLSWG 117

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               +     I + K++  +DW A  L+  Q +YAA+DV +L  +  Q   + +  G   
Sbjct: 118 FAAMVMHFNQIELDKSEARTDWLARPLTARQCEYAAADVAYLLPIAHQLVAQTEAAGHMA 177

Query: 179 LATSCCNFLMDRAELDLLGWEN 200
            A S C+ L  R  LD+L  E+
Sbjct: 178 AALSECDILCQR-RLDVLAPED 198


>gi|118590153|ref|ZP_01547556.1| probable ribonuclease d protein [Stappia aggregata IAM 12614]
 gi|118437125|gb|EAV43763.1| probable ribonuclease d protein [Stappia aggregata IAM 12614]
          Length = 394

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 3/187 (1%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +     D+ A C      D + VDTE L       +LC++Q++  D    +  ++ G   
Sbjct: 3   VITKTKDLAAACQRLAAHDYVTVDTEFLRETTFWPKLCVIQMAGPDMAFIVDALSEGLDL 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            P    ++ D    K+FH  R DI ++++   +   P+F T++A+ +   + +       
Sbjct: 63  EP-FFELMRDGSVTKVFHAARQDIEIIYHLGELIPAPLFDTQVAAMVC-GFGDSISYDQL 120

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + ++ G  I K+ + +DW+   L+ +QL YA +DV HL          L    R      
Sbjct: 121 VYKVTGARIDKSSRFTDWARRPLTAKQLDYALADVTHLRDAYQFLKANLAEQDRIHWVQD 180

Query: 183 CCNFLMD 189
               L  
Sbjct: 181 EMQVLTS 187


>gi|251789601|ref|YP_003004322.1| ribonuclease D [Dickeya zeae Ech1591]
 gi|247538222|gb|ACT06843.1| ribonuclease D [Dickeya zeae Ech1591]
          Length = 373

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 5/190 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   EG + A CA A  V  +A+DTE +       +L ++QL  GD    I  +A   ++
Sbjct: 6   ITTDEG-LSAVCAQACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLSLIDPLA--IRD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L + +  K  H G  D+ V    FG    P   ++I +         +G    
Sbjct: 63  WAPFRALLQNPQITKFLHAGSEDLEVFLNAFGCLPSPFIDSQILAAFLGKPL-SYGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + +   + + K++  +DW A  LS++Q QYAA+DV +L  +      + +  G  D A  
Sbjct: 122 VADYRQVALDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARTLVAETRAAGWLDAALD 181

Query: 183 CCNFLMDRAE 192
            C  L  R +
Sbjct: 182 ECRLLCQRRQ 191


>gi|146312020|ref|YP_001177094.1| ribonuclease D [Enterobacter sp. 638]
 gi|145318896|gb|ABP61043.1| ribonuclease D [Enterobacter sp. 638]
          Length = 384

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 3/189 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I  ++         R   AIA+DTE +       +L ++Q+  G     I  +  G  + 
Sbjct: 15  ITTNDALATLCDVTRDFPAIALDTEFVRTRTYYPQLGLIQMYDGKNVSLIDPL--GITDW 72

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             +  +L++    K  H G  D+ V   TFG+   P+  T+I +  +       G    +
Sbjct: 73  SPMRELLLNTAITKYLHAGSEDLEVFLNTFGIMPEPLIDTQILAAFS-GRPLSWGFAAMV 131

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +E  GI + K++  +DW A  L++ QL YAA+DV +L  +  Q  ++ +  G  D A + 
Sbjct: 132 EEYTGIALDKSESRTDWLARPLTERQLDYAAADVFYLLPIAGQLMKEAEAAGWLDAALNE 191

Query: 184 CNFLMDRAE 192
           C     R +
Sbjct: 192 CRMTQQRRQ 200


>gi|85708161|ref|ZP_01039227.1| ribonuclease D [Erythrobacter sp. NAP1]
 gi|85689695|gb|EAQ29698.1| ribonuclease D [Erythrobacter sp. NAP1]
          Length = 400

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 3/190 (1%)

Query: 6   VHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +   D  A+   R    + +AVDTE +        LC+VQ++  +    I  +A G   +
Sbjct: 7   ITTSDALADLCERLSQSEFVAVDTEFMRENTYWPELCLVQIANTEEAAAIDPLADGIDLS 66

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L  +  +++  K+FH G  D+ ++    G    P+F T+I S +  + + Q G  + +
Sbjct: 67  PLLELLTENDEVLKVFHAGGQDVEIIVNMTGKTPFPIFDTQI-SMMAISQSEQIGYANLV 125

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
              L I + K  + +DWS   L+D Q++YA  DV HL  +  +  +KL +  R     + 
Sbjct: 126 DHWLNITVDKGARFTDWSRRPLTDRQIEYAIGDVTHLSKIFPKILKKLMKTERGAWLDAE 185

Query: 184 CNFLMDRAEL 193
              L D +  
Sbjct: 186 MEKLADPSNY 195


>gi|293392299|ref|ZP_06636633.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952833|gb|EFE02952.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 385

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 4/189 (2%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           ++   + ++   C AAR   A+A+DTE + +     +L ++Q+  GD    I  +    +
Sbjct: 15  SVVTDDAELARVCQAARQQSAVALDTEFVRVRTLYPKLGLIQMYFGDQVALIDPLP--IQ 72

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +    + +L D    KI H    D+ V    F    RP+  T++ +     +    G   
Sbjct: 73  DFSPFIELLADTNLVKILHACSEDLDVFQRYFQQLPRPMCDTQVMAHFL-GFAGSTGFAT 131

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++    I I K    +DW A  LSD QLQYAA+DV +L  L  Q  ++L +        
Sbjct: 132 LVQHYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYGQMQQQLTQTEWQSAVE 191

Query: 182 SCCNFLMDR 190
           + C FL+++
Sbjct: 192 NECEFLLNK 200


>gi|89075742|ref|ZP_01162130.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
 gi|89048474|gb|EAR54049.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
          Length = 363

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +AR   A+ +DTE +       RL ++QL  G+    I  I    ++   L  +L D+  
Sbjct: 6   SARAHSAVMLDTEFVRTRTLYPRLGLIQLFDGEQLSLIDPIEV--EDMEPLWALLRDQSV 63

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    D+ V  +  G    P+F T++ +     +    G    +KE +G+ + K +
Sbjct: 64  IKVLHACGEDLEVFQHHAGCLPTPMFDTQLMAAFL-GHGISTGFGALVKEYVGVELDKGE 122

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W A  L+ +QL YAA+DV +L  L      K+++ G  +     C  +M R
Sbjct: 123 ARTNWLARPLTAKQLDYAAADVYYLKPLFETLLAKVEKRGYMEALQQECQSVMQR 177


>gi|119384625|ref|YP_915681.1| ribonuclease D [Paracoccus denitrificans PD1222]
 gi|119374392|gb|ABL69985.1| ribonuclease D [Paracoccus denitrificans PD1222]
          Length = 401

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 15/214 (7%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLS---------PGDGTVDIIRI 56
              ++   C  A+    + +DTE L       +LC++Q +          G  +V I  +
Sbjct: 18  TTAELAEFCELAKAEPYVTLDTEFLRERTYYSKLCLIQAALPPASATKAAGGLSVLIDPL 77

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
             G    P L  +   +   K+FH  R D+ + F+  GV   P+F T+IA+ +   +  Q
Sbjct: 78  VEGLSLEP-LYDLFRHKPTVKVFHAARQDLEIFFHDAGVMPDPLFDTQIAAMVC-GFGEQ 135

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G +  +K++    + K+ + +DWS   LSD Q  YA +DV HL A+    + +L + GR
Sbjct: 136 VGYETLVKKIARQPLDKSSRFTDWSHRPLSDAQAAYALADVTHLRAIYEFLSAQLDKTGR 195

Query: 177 SDLATSCCNFLMDRAELDLL---GWENVDIFSHS 207
           +         L++           WE V   S S
Sbjct: 196 APWLAEEVAVLLNPETYITRPEEAWERVRTRSGS 229


>gi|300717019|ref|YP_003741822.1| ribonuclease D [Erwinia billingiae Eb661]
 gi|299062855|emb|CAX59975.1| Ribonuclease D [Erwinia billingiae Eb661]
          Length = 373

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 4/192 (2%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+      +   C  AR   A+A+DTE +        L ++Q+  G+    I  +     
Sbjct: 4   TMITTNEALAELCLTARQFPALALDTEFVRTRTYYPGLGLIQMYDGENIALIDPLP--IT 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
                  +L+DEK  K  H G  D+ V  + + V   P+  T+I +  T       G   
Sbjct: 62  EWAPFRDLLLDEKVIKFLHAGSEDLEVFLHEYDVLPVPMIDTQILAAFT-GRPLSCGFAT 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++   GI + K++  +DW A  L+++Q QYAA+DV +L  +  +   + +  GR + A 
Sbjct: 121 IVESFTGIALDKSESRTDWLARPLTEKQCQYAAADVFYLLPIAHKLLAEAEESGRINAAL 180

Query: 182 SCCNFLMDRAEL 193
           + C+ L  R ++
Sbjct: 181 NECSLLCQRRQM 192


>gi|167041251|gb|ABZ06007.1| putative 3'-5' exonuclease [uncultured marine microorganism
           HF4000_005D21]
 gi|167045755|gb|ABZ10401.1| putative 3'-5' exonuclease [uncultured marine bacterium
           HF4000_APKG3108]
          Length = 214

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 6/211 (2%)

Query: 1   MTTIRVHEGDIPAECA--ARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIA 57
           MT I   + DI  +         ++A+DTE  GL  P RD+L +VQ S G+    I++  
Sbjct: 5   MTKIYKFQDDISTDALKELEKHSSLAIDTEGSGLQIPHRDKLSLVQFSAGNNDAYIVQPN 64

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                APN+V +L + K  KI HY R+D++ L Y     V+ +F TKIAS+L RTY+  H
Sbjct: 65  RKSYKAPNIVKILENAKITKIGHYLRYDVSGLEYFLKCNVKNIFDTKIASKLCRTYSQNH 124

Query: 118 GLKDNLKELLGINISKAQQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           GLKD   E     + K   SSDW+ +  +L+D QLQY ++DV++LH ++    + L R  
Sbjct: 125 GLKDLALEFCSKKLDKRLGSSDWNKNLYELTDAQLQYCSNDVIYLHKIKDALYKMLVREN 184

Query: 176 RSDLATSCCNFLMDRAELDLLGWENVDIFSH 206
           R +L  SC  FL  R +LD  G+   DIF H
Sbjct: 185 RLELYESCIQFLKTRIKLDQSGFAE-DIFQH 214


>gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626]
 gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626]
          Length = 376

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 3/187 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I   E  I     A +V  +AVDTE L       +LC+VQ+S G+    I  ++    + 
Sbjct: 3   ISTQEELISFCLRAAHVPVLAVDTEFLREKTYYPKLCLVQVSTGEEIAAIDPLS--IDDL 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             LV +  D+K  K+ H    D+ VL Y       PVF T++A+        Q      +
Sbjct: 61  SPLVRLFEDQKIVKVIHACSQDLEVLLYGMHCACAPVFDTQLAAAFLGMR-QQASYASVV 119

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +  +G+++ K +  +DWS   L  EQL YA  DV +L  +     E+L +  R       
Sbjct: 120 EHYMGVHLPKTESLTDWSRRPLDPEQLVYAEDDVRYLPDIYRCMYERLMKTNRLGWLMPE 179

Query: 184 CNFLMDR 190
            N     
Sbjct: 180 MNAYTAP 186


>gi|153823321|ref|ZP_01975988.1| ribonuclease D [Vibrio cholerae B33]
 gi|126519155|gb|EAZ76378.1| ribonuclease D [Vibrio cholerae B33]
          Length = 246

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 4/184 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I    GD+   C AAR  D + +DTE +       +L ++Q+  G+    I         
Sbjct: 5   IISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDE 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L D    K+ H    D+ V    FG    P+  T+I +     Y    G    
Sbjct: 63  MTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +  +  E++ + G  D A  
Sbjct: 122 VQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQ 181

Query: 183 CCNF 186
               
Sbjct: 182 ESEL 185


>gi|303253729|ref|ZP_07339866.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247590|ref|ZP_07529633.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302647454|gb|EFL77673.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855860|gb|EFM88020.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 371

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 8/194 (4%)

Query: 4   IRVHEGDIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           I  H  D   +       A    A+A+DTE +       +L ++QL  GD    I     
Sbjct: 5   IHYHWIDTDEKLKTVCENACRKSAVALDTEFIRTRSYYPKLGLIQLFDGDTVSLIDP--N 62

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              +    +G+L  +   K+ H    D+ V  + F     P+  T+I +          G
Sbjct: 63  PISDFSPFIGLLTCQNVVKVLHACSEDLEVFQHLFKQLPTPLADTQIMAGFAGV-GISLG 121

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               +   L + + K    +DW A  L++EQLQYAA+DV +L  +  +    L      +
Sbjct: 122 FAKLVAHYLNVELDKGASRTDWLARPLTEEQLQYAAADVWYLLPVYQRLVSDLDATRWQN 181

Query: 179 LATSCCNFLMDRAE 192
                C +L+++ E
Sbjct: 182 AVEQECQYLLNKRE 195


>gi|253688324|ref|YP_003017514.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754902|gb|ACT12978.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 374

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 4/181 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +     +      +L DE+  
Sbjct: 19  ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLT--ITDWAPFQALLRDEQVT 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    FG    P   T+I +         +G    + + +G+ + K++ 
Sbjct: 77  KFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPL-SYGFAALVADYMGVTLDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
            +DW A  LS++Q  YAA+DV +L  +  Q     +  G  + A   C  L  R + D+L
Sbjct: 136 RTDWLARPLSEKQCDYAAADVFYLLPMAAQLVADTEAAGWMNAALDECLLLCQRKQ-DIL 194

Query: 197 G 197
            
Sbjct: 195 A 195


>gi|124023956|ref|YP_001018263.1| ribonuclease D [Prochlorococcus marinus str. MIT 9303]
 gi|123964242|gb|ABM78998.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9303]
          Length = 212

 Score =  218 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 3/177 (1%)

Query: 2   TTIRVHEGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
            +  V +GD+ ++ A RY    AIAVDTE +GL+  RDRLC+VQ+      V  +RI  G
Sbjct: 9   ASFVVFDGDLDSDWANRYLRASAIAVDTEAMGLIHGRDRLCLVQICDPADNVACVRIGLG 68

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q +AP L  ++     EK+FH+ RFD+A L    G+ V P+FCTK+ASRL RTY+ +HGL
Sbjct: 69  QTSAPRLQKLMEATSVEKVFHFARFDVAALASGLGISVLPIFCTKVASRLARTYSPRHGL 128

Query: 120 KDNLKELLGINISKAQQSSDWSA-DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           K+ + EL+G+ + K  QSSDW   ++LSD QL YAA+D  +L   R +    L+R G
Sbjct: 129 KEVVMELVGVELDKQAQSSDWGRVEELSDVQLAYAANDARYLLPARQRLEMMLRREG 185


>gi|330445493|ref|ZP_08309145.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489684|dbj|GAA03642.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 375

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 14/208 (6%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            I      +   C  A+   A+ +DTE +       RL ++QL  G+    I  +     
Sbjct: 4   DIITTTEQLQQRCDSAKTQAAVMLDTEFVRTRTLYPRLGLIQLFDGEHLSLIDPLE--ID 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +   L  +L D+   K+ H    D+ V  +  G    P+  T++ +     +    G   
Sbjct: 62  DMEPLWALLRDQSVIKVLHACGEDLEVFQHHAGCLPTPMLDTQLMAAFL-GHGISTGFGA 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            +KE +G+ + K +  ++W A  L+ +QL YAA+DV +L  L      K++  G  +   
Sbjct: 121 LVKEYVGVELDKGEARTNWLARPLTAKQLDYAAADVHYLKPLYETLLAKVEATGYMEALQ 180

Query: 182 SCCNFL---------MDRAELDL-LGWE 199
             CN +          ++A LD+   W+
Sbjct: 181 QECNSVMLRRIKPVDPEKAYLDIKNAWQ 208


>gi|268589713|ref|ZP_06123934.1| ribonuclease D [Providencia rettgeri DSM 1131]
 gi|291314943|gb|EFE55396.1| ribonuclease D [Providencia rettgeri DSM 1131]
          Length = 373

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             + ++   C  A     +A+DTE +       +L ++QL  G     I  +     +  
Sbjct: 7   TTDSELAQVCQEASNAPWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPLL--MTDFS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L + ++ K  H G  D+ V  + F     P+  T++ +     Y    G    + 
Sbjct: 65  PFKALLTNPEQLKFLHAGSEDLEVFMHDFDCVPEPMIDTQVVAAFL-GYPISCGFASLVA 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E LGI + K++  +DW A  LS++Q  YAA+DV++L  L     EK+   G  + A   C
Sbjct: 124 EHLGIELDKSESRTDWLARPLSEKQCDYAAADVLYLLPLAEILMEKVTEAGYLEDAKDEC 183

Query: 185 NFLMDRAE 192
             ++ R +
Sbjct: 184 QRVVARRQ 191


>gi|242239440|ref|YP_002987621.1| ribonuclease D [Dickeya dadantii Ech703]
 gi|242131497|gb|ACS85799.1| ribonuclease D [Dickeya dadantii Ech703]
          Length = 403

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 5/198 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  +   C+ AR +  +A+DTE +       +L ++QL  G+    I  ++     
Sbjct: 34  LITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLS--ITV 91

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L+D    K  H G  D+ V    FG+   P   T+I           +G    
Sbjct: 92  WQPFCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPL-SYGFAAL 150

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + + + + + K++  +DW A  LS++Q QYAA+DV +L  + ++  E+    G  + A  
Sbjct: 151 VADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWEAALD 210

Query: 183 CCNFLMDRAELDLLGWEN 200
            C  L  R + D+L  E 
Sbjct: 211 ECRQLCQRKQ-DVLAPEQ 227


>gi|307131134|ref|YP_003883150.1| ribonuclease D [Dickeya dadantii 3937]
 gi|306528663|gb|ADM98593.1| ribonuclease D [Dickeya dadantii 3937]
          Length = 373

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 5/190 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   EG + A CA A  V  +A+DTE +       +L ++QL  GD    I  +A   ++
Sbjct: 6   ITTDEG-LSAVCAQACAVSEVALDTEFVRTRTYYPQLGLIQLYDGDNLSLIDPLA--IRD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L + +  K  H G  D+ V    FG    P   T+I +         +G    
Sbjct: 63  WAPFRALLQNPQVTKFLHAGSEDLEVFLNAFGGLPSPFIDTQILAAFLGKPL-SYGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + +   + + K++  +DW A  LS++Q QYAA+DV +L  +     E+ +  G  + A  
Sbjct: 122 VADYRQVALDKSESRTDWLARPLSEKQCQYAAADVFYLLPVARTLVEETRAAGWLEAALD 181

Query: 183 CCNFLMDRAE 192
            C  L  R +
Sbjct: 182 ECLLLCQRRQ 191


>gi|209694623|ref|YP_002262551.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
 gi|208008574|emb|CAQ78749.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
          Length = 374

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 4/181 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I  H   +   C  A     + +DTE +       RL ++Q+  G+    +  +     +
Sbjct: 5   IVKHSQRLAEICQQASNKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVE--IDD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L +E   K+ H    D+ V  +  G    P+  T+I +     Y    G    
Sbjct: 63  LTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + + LG+++ K +  +DW A  LSD+QL YAA+DV +L  L  +   +L +      A  
Sbjct: 122 VSDYLGVDLDKGESRTDWMARPLSDKQLDYAAADVHYLLPLFEKLQAELAQTEWEKAAYQ 181

Query: 183 C 183
            
Sbjct: 182 E 182


>gi|323495020|ref|ZP_08100109.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
 gi|323310677|gb|EGA63852.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
          Length = 346

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 12/183 (6%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE +       +L ++QL  G     I        +    V +L D    K+ H   
Sbjct: 1   MLDTEFVRTRTYYPQLGLIQLYDGQTLSLIDP--TVIDDMTAFVHLLQDTSVLKVLHACG 58

Query: 84  FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143
            D+ V   +FG    P+  T++ +     +    G    + E L + + K++  +DW A 
Sbjct: 59  EDLEVFQNSFGCLPYPMVDTQLMAAFL-GHGLSTGFAALVNEYLNVELDKSESRTDWLAR 117

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---------MDRAELD 194
            L+D+QL+YAA+DV +L  L  Q  E + + G    A    + +          +RA LD
Sbjct: 118 PLTDKQLEYAAADVYYLLPLYEQLFENITQAGWWQAAQQESDLIASKRIKTVNPERAYLD 177

Query: 195 LLG 197
           + G
Sbjct: 178 VKG 180


>gi|212711905|ref|ZP_03320033.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM
           30120]
 gi|212685427|gb|EEB44955.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM
           30120]
          Length = 373

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             + ++   C  A     +A+DTE +       +L ++QL  G     I  +     +  
Sbjct: 7   TTDSELAKVCQEASDAPWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPLL--MTDFS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L +  + K  H G  D+ V  + FG    P+  T++ +     Y    G    + 
Sbjct: 65  PFKALLTNPNQLKFLHAGSEDLEVFMHDFGCVPEPMIDTQVLAAFL-GYPISCGFATLVA 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E LGI + K++  +DW A  LS++Q  YA +DV++L  L     EK+   G    A   C
Sbjct: 124 EHLGIELDKSESRTDWLARPLSEKQCDYATADVLYLLPLAKILMEKVSEEGLLADAQDEC 183

Query: 185 NFLMDRAE 192
             ++ R +
Sbjct: 184 QRIVARRQ 191


>gi|227111497|ref|ZP_03825153.1| ribonuclease D [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 374

 Score =  217 bits (555), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +     +      +L DE+  
Sbjct: 19  ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLT--ITDWAPFQALLRDEQVT 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    FG    P   T+I +         +G    + + +G+ + K++ 
Sbjct: 77  KFLHAGSEDLEVFLNAFGTLPVPFIDTQILAAFLGKPL-SYGFAALVADYMGVTLDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
            +DW A  LS++Q  YAA+DV +L  + +Q     +  G  + A   C  L  R + D+L
Sbjct: 136 RTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWMNAALDECLLLCQRKQ-DIL 194

Query: 197 G 197
            
Sbjct: 195 A 195


>gi|238895380|ref|YP_002920115.1| ribonuclease D [Klebsiella pneumoniae NTUH-K2044]
 gi|238547697|dbj|BAH64048.1| ribonuclease D [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 375

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + A C AA    A+A+DTE +       +L ++QL  G     I  +     +  
Sbjct: 7   TTDNGLRAVCEAASTASAVALDTEFVRTRTYYPQLGLLQLFDGQQVSLIDPLTIN--DWA 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            +  +L+++   K  H G  D+ V    F +  +P+  T+I +          G    ++
Sbjct: 65  PMRDLLLNQDVTKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFC-GRPMSWGFASMVE 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  Q   +  R G    A   C
Sbjct: 124 EYSGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDEC 183

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 184 RVMQQRRQ 191


>gi|269103055|ref|ZP_06155752.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162953|gb|EEZ41449.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 382

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 4/184 (2%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           TI     D+   C AA    AI +DTE +       +L ++QL  G     I  +A   +
Sbjct: 4   TIITTTADLKMVCQAASSAPAIMLDTEFVRTRTLYPKLGLIQLFDGKQLSLIDPLA--IE 61

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +   L  +L D+   K+ H    D+ V  +  G    P+  T++ +     +    G   
Sbjct: 62  DMEPLWDLLRDQSVMKVLHACGEDLEVFQHHAGCLPVPMLDTQLMAAFL-GHGVSTGFGA 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            +KE +G+ + K +  ++W A  L+D QL YAA+DV +L  L     EK+   G      
Sbjct: 121 LVKEYVGVELDKGEARTNWLARPLTDRQLNYAAADVFYLLPLYETLLEKVGAAGYCKALE 180

Query: 182 SCCN 185
             CN
Sbjct: 181 QECN 184


>gi|308187080|ref|YP_003931211.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1]
 gi|308057590|gb|ADO09762.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1]
          Length = 373

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 5/195 (2%)

Query: 7   HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  +   C  AR   A+A+DTE +       +L ++QL      V I  +    ++   
Sbjct: 8   QDEQLADVCQKARQHAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPL--NIRDWSP 65

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
            + +L D    K  H G  D+ V  + FGV   P+  T+I +  +       G    +  
Sbjct: 66  FIALLTDTSVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFS-GQPLSWGFASMVAH 124

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
              + + K++  +DW A  L+  Q +YAA+DV +L  +  Q     +  G    A S C+
Sbjct: 125 FTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGNMAAALSECD 184

Query: 186 FLMDRAELDLLGWEN 200
            L  R  LD +  + 
Sbjct: 185 NLCQR-RLDSVAPDE 198


>gi|50121299|ref|YP_050466.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
 gi|49611825|emb|CAG75274.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
          Length = 374

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 4/181 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +     +      +L DE+  
Sbjct: 19  ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLT--ITDWAPFQALLRDEEVT 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V   TFG    P   T+I +         +G    + + +G+++ K++ 
Sbjct: 77  KFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPL-SYGFAALVADYMGVSLDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
            +DW A  LS++Q  YAA+DV +L  + +Q     +  G  + A   C  L  R + D+L
Sbjct: 136 RTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTETAGWMNAALDECLLLCQRKQ-DIL 194

Query: 197 G 197
            
Sbjct: 195 A 195


>gi|317491812|ref|ZP_07950247.1| ribonuclease D [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920246|gb|EFV41570.1| ribonuclease D [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 371

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +     D+   C  A     IA+DTE +       +L ++QL  G+    I  +     +
Sbjct: 5   LITTSSDLKQVCEQASRHAYIALDTEFVRTRTYYPQLGLIQLFDGETLTLIDPLP--ITD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L + +  K+ H    D+ V  + F     P+  T+I +  T       G    
Sbjct: 63  WQPFVALLKNPEVTKLLHACSEDLEVFLHEFQTLPTPMIDTQILAAFT-GRALSCGFAAM 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + + L + + K++  +DW A  L++ Q +YAA+DV +L  L  +   ++   G  D A  
Sbjct: 122 VNDYLQVELDKSESRTDWLARPLTERQCEYAAADVFYLLPLADKLIAEVAEAGWLDAAKD 181

Query: 183 CCNFLMDRAE 192
            C  L  R +
Sbjct: 182 DCLSLCRRRQ 191


>gi|59712314|ref|YP_205090.1| ribonuclease D [Vibrio fischeri ES114]
 gi|59480415|gb|AAW86202.1| ribonuclease D [Vibrio fischeri ES114]
          Length = 373

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I      +   C  A     + +DTE +       RL ++Q+  G+    +  +     +
Sbjct: 5   IVTQSQRLAEICQQASTKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVE--IDD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L +E   K+ H    D+ V  +  G    P+  T+I +     Y    G    
Sbjct: 63  LTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + + LGI + K +  +DW A  LSD+QL YAA+DV +L  L  +   +L +    D A  
Sbjct: 122 VSDYLGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAYQ 181

Query: 183 CCNFLMDRAE 192
                + + E
Sbjct: 182 ESALAVKKRE 191


>gi|295095587|emb|CBK84677.1| ribonuclease D [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 384

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
               ++ + C   R   AIA+DTE +       +L ++Q+  G     I  +  G  +  
Sbjct: 16  TTNDELASLCEVTREFPAIALDTEFVRTRTYYPQLGLIQMYDGKHVSLIDPL--GITDWA 73

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            +  +L+D    K  H G  D+ V   TFG+  +P+  T+I +  +       G    ++
Sbjct: 74  PMRELLLDTAVTKYLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFS-GRPLSWGFAAMVE 132

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L+  QL+YAA+DV +L  +  Q  ++ +  G    A   C
Sbjct: 133 EYTGLTLDKSESRTDWLARPLTARQLEYAAADVFYLLPIAGQLMKEAEASGWLSAALDEC 192

Query: 185 NFLMDRAE 192
                R +
Sbjct: 193 RMTQQRRQ 200


>gi|332185190|ref|ZP_08386939.1| ribonuclease D [Sphingomonas sp. S17]
 gi|332014914|gb|EGI56970.1| ribonuclease D [Sphingomonas sp. S17]
          Length = 392

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 6/196 (3%)

Query: 13  AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A   AR    D I VDTE +        LC++Q++       I   A G    P L  ++
Sbjct: 14  ANLCARLSQADFITVDTEFMRESTYWPELCLIQIADTQEAAAIDPKAPGLDMTPLLDLLV 73

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            +++  K+FH G  DI +++   G    P+F T+IA+ +      Q G  + +   LGI 
Sbjct: 74  NNDEVLKVFHAGGQDIEIIYNLTGKTPHPLFDTQIAA-MALGQGEQIGYSNLVDSWLGIQ 132

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           + K  + +DWS   L   Q+ YA  DV HL  +  +  E+L++ GR          L D 
Sbjct: 133 VDKGARFTDWSRRPLDQRQVDYAIGDVTHLSDIFPRMLERLRKTGRGAWLDQEMERLADP 192

Query: 191 AEL---DLLGWENVDI 203
                     W+ V +
Sbjct: 193 EHYANDPNSAWKRVRV 208


>gi|197335934|ref|YP_002156528.1| ribonuclease D [Vibrio fischeri MJ11]
 gi|197317424|gb|ACH66871.1| ribonuclease D [Vibrio fischeri MJ11]
          Length = 373

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 4/181 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I      +   C  A     + +DTE +       RL ++Q+  G+    +  +     +
Sbjct: 5   IVTQSQRLAEICQQASTKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVE--IDD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L +E   K+ H    D+ V  +  G    P+  T+I +     Y    G    
Sbjct: 63  LTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFL-GYGLSTGFAKL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + + LGI + K +  +DW A  LSD+QL YAA+DV +L  L  +   +L +    D A  
Sbjct: 122 VSDYLGIELDKGEARTDWMARPLSDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAYQ 181

Query: 183 C 183
            
Sbjct: 182 E 182


>gi|156933634|ref|YP_001437550.1| ribonuclease D [Cronobacter sakazakii ATCC BAA-894]
 gi|156531888|gb|ABU76714.1| hypothetical protein ESA_01456 [Cronobacter sakazakii ATCC BAA-894]
          Length = 369

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 5/188 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I  ++  +   C  AR   A+A+DTE +       +L ++QL  G+    I  +     +
Sbjct: 2   ITTNDA-LATLCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLT--ITD 58

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L D+   K  H G  D+ V    F +   P   T++ +     +    G    
Sbjct: 59  WAPFQALLQDQNVTKFLHAGSEDLEVFQNAFSMMPDPFIDTQVLASFV-GHPLSCGFATL 117

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++   G+ + K++  +DW A  L++ Q  YAA+DV +L  +  +  E+++  G    A +
Sbjct: 118 VEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAIN 177

Query: 183 CCNFLMDR 190
            C  +  R
Sbjct: 178 ECRLMTQR 185


>gi|304396155|ref|ZP_07378037.1| ribonuclease D [Pantoea sp. aB]
 gi|304356524|gb|EFM20889.1| ribonuclease D [Pantoea sp. aB]
          Length = 373

 Score =  217 bits (553), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 10/207 (4%)

Query: 1   MTTIRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M    + + D  A+    AR   A+A+DTE +       +L ++QL      V I  +  
Sbjct: 1   MNYSLIDQNDQLADVCQKARQQAAVALDTEFVRTRTYYPQLGLIQLFDDHQLVLIDPL-- 58

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
             ++    + +L D +  K  H G  D+ V  + FGV   P+  T+I +  +       G
Sbjct: 59  NIRDWSPFIALLTDTRVTKFLHAGGEDLEVFLHRFGVLPTPMIDTQILAAFS-GQPLSWG 117

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               +     + + K++  +DW A  L+  Q +YAA+DV +L  +  Q     +  G   
Sbjct: 118 FASMVAHFTQVELDKSESRTDWLARPLTQRQCEYAAADVHYLLPIARQLMINTEEAGNMA 177

Query: 179 LATSCCNFLMDRAELDLL----GWENV 201
            A S C+ L  R  LD L     W ++
Sbjct: 178 AALSECDNLCQR-RLDSLSPDEAWRDI 203


>gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989]
 gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989]
          Length = 383

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 4/181 (2%)

Query: 11  IPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   C +     AIA+DTE +        + ++Q++  +G   I  +A    +   +  +
Sbjct: 27  LADLCQSLSTQSAIALDTEFVRTRTYYPHIGLLQIADENGVYLIDPLAIS--DTQPMADV 84

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L +    K+ H    D+ V  Y FGV    +F T++A+     Y +  G  + L+E+  I
Sbjct: 85  LQNPAIVKVVHACSEDLEVFQYAFGVLPESLFDTQVAAGFA-GYGSSIGYANLLREIKRI 143

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +I K +  SDW    LSD QL+YAA DV +L  +     EKLQ+  R     + C  +++
Sbjct: 144 DIPKQETRSDWLQRPLSDAQLRYAALDVEYLLEIYRGLVEKLQQQQRLLWVEADCQRMIE 203

Query: 190 R 190
           +
Sbjct: 204 K 204


>gi|296101862|ref|YP_003612008.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056321|gb|ADF61059.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 384

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
               ++ + C   R   AIA+DTE +       +L ++Q+  G     I  +  G  +  
Sbjct: 16  TTNDELASLCEVTRDFPAIALDTEFVRTRTYYPQLGLIQMYDGKHVSLIDPL--GITDWT 73

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            +  +L+D    K  H G  D+ V   TFG+  +P+  T+I +  +       G    ++
Sbjct: 74  PMRDLLLDTAVTKYLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFSN-RPLSWGFAAMVE 132

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ QL YAA+DV +L  +  Q  ++ +  G    A   C
Sbjct: 133 EYTGLTLDKSESRTDWLARPLTERQLDYAAADVFYLLPIAGQLMKEAEASGWLPAALDEC 192

Query: 185 NFLMDRAE 192
                R +
Sbjct: 193 RMTQQRRQ 200


>gi|33152538|ref|NP_873891.1| ribonuclease D [Haemophilus ducreyi 35000HP]
 gi|33148762|gb|AAP96280.1| ribonuclease D [Haemophilus ducreyi 35000HP]
          Length = 373

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 3/169 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           AIA+DTE +       +  ++QL  G+ T  I             + +L +    K+ H 
Sbjct: 28  AIALDTEFIRTRSYYPKFGLIQLFDGEQTSLIDPTTISDFL--PFIDLLANPNIVKVLHA 85

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+ +  + F   + P+  T+I +  +       G    +   L I + K    +DW 
Sbjct: 86  CSEDLEIFQHQFNQALTPLIDTQIMAAFS-GLGLSIGFAKLVNHYLNIELDKGASRTDWL 144

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           A  L++ QLQYAA+DV +L  +  +   +L +    +     C  L+++
Sbjct: 145 ARPLTETQLQYAAADVYYLLPIYQKLQAELAQTNWQEAVNQECQLLVNK 193


>gi|114797633|ref|YP_760953.1| ribonuclease D [Hyphomonas neptunium ATCC 15444]
 gi|114737807|gb|ABI75932.1| ribonuclease D [Hyphomonas neptunium ATCC 15444]
          Length = 388

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 6/206 (2%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T    +  +   C A    D + VDTE          LC++Q S       I   A    
Sbjct: 7   TPITEQSALEDLCGALSESDFVCVDTEFHRETTYWPELCLIQASAPGVEGLIDPRAEDLD 66

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
             P L  ++  +++ K+FH  R DI +     G    P+F T++A+ +   + +     +
Sbjct: 67  IRPFL-DLIASDRQLKVFHAARQDIEIFNRLIGHPPGPIFDTQVAA-MALGFGDSISYDN 124

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ +L  +I K+ Q +DW    LS +QL YA  DV HL    L+  ++L++ GR +   
Sbjct: 125 LIQRVLRKHIDKSSQFTDWMRRPLSQKQLVYALGDVTHLRDAYLKMRDELEKAGRMNWVR 184

Query: 182 SCCNFLMDRAELD---LLGWENVDIF 204
                L D A  D   +  W+ + + 
Sbjct: 185 EEMAELEDPATYDTDPMNAWQRLKLR 210


>gi|238762951|ref|ZP_04623918.1| Ribonuclease D [Yersinia kristensenii ATCC 33638]
 gi|238698709|gb|EEP91459.1| Ribonuclease D [Yersinia kristensenii ATCC 33638]
          Length = 373

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +   Q        +L D    
Sbjct: 19  ARTYAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQ--WQPFRELLQDLNVV 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F +   P+  T++ +  +   T   G    + E  G+ + K++ 
Sbjct: 77  KYLHAGSEDLEVFLNAFDIMPTPMIDTQVLAAFS-GRTLSCGFAMLVNEFEGVELDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDECELLCRR 189


>gi|322514433|ref|ZP_08067476.1| ribonuclease D [Actinobacillus ureae ATCC 25976]
 gi|322119681|gb|EFX91739.1| ribonuclease D [Actinobacillus ureae ATCC 25976]
          Length = 371

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 4/183 (2%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   C  A    A+ +DTE + +     +L ++QL  G+  V +I        AP  + +
Sbjct: 16  LAEVCQNASQKPAVTLDTEFIRIRTYYPKLGLIQLFDGE-QVSLIDPTKIDDFAP-FIEL 73

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L +++  K+ H    D+ V  + F     P+  T+I +          G    +   L I
Sbjct: 74  LANQQVVKVLHACGEDLEVFQHRFKQLPTPLVDTQIMADFA-GIGVSMGFAKLVAHYLQI 132

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K    +DW A  LS+EQLQYAA+DV +L  +  +    L      +     C  L++
Sbjct: 133 ELDKGASRTDWLARPLSEEQLQYAAADVWYLLPVYQRLVVDLDVTRWQNAVEEECQTLLE 192

Query: 190 RAE 192
           + +
Sbjct: 193 KRQ 195


>gi|262041917|ref|ZP_06015100.1| ribonuclease D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259040723|gb|EEW41811.1| ribonuclease D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 371

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + A C AA    A+A+DTE +       +L ++QL  G     I  +     +  
Sbjct: 3   TTDDGLRAVCEAASTASAVALDTEFVRTRTYYPQLGLLQLFDGQQVSLIDPLTIN--DWA 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            +  +L+++   K  H G  D+ V    F +  +P+  T+I +          G    ++
Sbjct: 61  PMRDLLLNQDVTKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  Q   +  R G    A   C
Sbjct: 120 EYSGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RVMQQRRQ 187


>gi|330000265|ref|ZP_08303673.1| ribonuclease D [Klebsiella sp. MS 92-3]
 gi|328538027|gb|EGF64198.1| ribonuclease D [Klebsiella sp. MS 92-3]
          Length = 372

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + A C AA    A+A+DTE +       +L ++QL  G     I  +     +  
Sbjct: 4   TTDDGLRAVCEAASTASAVALDTEFVRTRTYYPQLGLLQLFDGQQVSLIDPLTIN--DWA 61

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            +  +L+++   K  H G  D+ V    F +  +P+  T+I +          G    ++
Sbjct: 62  PMRDLLLNQDVTKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFC-GRPMSWGFASMVE 120

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  Q   +  R G    A   C
Sbjct: 121 EYSGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDEC 180

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 181 RVMQQRRQ 188


>gi|152970868|ref|YP_001335977.1| ribonuclease D [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150955717|gb|ABR77747.1| RNase D, processes tRNA precursor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 371

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + A C AA    A+A+DTE +       +L ++QL  G     I  +     +  
Sbjct: 3   TTDDGLRAVCEAASTASAVALDTEFVRTRTYYPQLGLLQLFDGQQVSLIDPLTIN--DWA 60

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            +  +L+++   K  H G  D+ V    F +  +P+  T+I +          G    ++
Sbjct: 61  PMRDLLLNQDVTKYLHAGSEDLEVFLNAFNLMPQPLIDTQILAAFC-GRPMSWGFASMVE 119

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L++ Q +YAA+DV +L  +  Q   +  R G    A   C
Sbjct: 120 EYSGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDEC 179

Query: 185 NFLMDRAE 192
             +  R +
Sbjct: 180 RVMQQRRQ 187


>gi|227327782|ref|ZP_03831806.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 374

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 4/181 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +     +      +L DE+  
Sbjct: 19  ARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLT--ITDWAPFQALLRDEQVT 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F     P   T+I +         +G    + + +G+ + K++ 
Sbjct: 77  KFLHAGSEDLEVFLNAFETLPTPFIDTQILAAFLGKPL-SYGFAALVADYMGVTLDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
            +DW A  LS++Q  YAA+DV +L  + +Q     +  G  + A   C  L  R + D+L
Sbjct: 136 RTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTEAAGWMNAALDECLLLCQRKQ-DIL 194

Query: 197 G 197
            
Sbjct: 195 A 195


>gi|322832720|ref|YP_004212747.1| ribonuclease D [Rahnella sp. Y9602]
 gi|321167921|gb|ADW73620.1| ribonuclease D [Rahnella sp. Y9602]
          Length = 373

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 3/178 (1%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
             A+    IA+DTE +       +L ++QL  G+    I  +          + +LVD  
Sbjct: 17  LQAKAHSKIALDTEFVRTRTYYPQLGLIQLFDGERLTLIDPLP--ITAWQPFIDLLVDPD 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K  H G  D+ V    FGV   P+  T+I +  +       G    + E  G+ + K+
Sbjct: 75  VIKFLHAGSEDLEVFLNAFGVMPSPLIDTQILAAFS-GRPLSCGFARLVAETTGVELDKS 133

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           +  +DW A  LS++Q  YAA+DV +L  L  Q   + Q  G  D A   C  L  R +
Sbjct: 134 ESRTDWIARPLSEKQCVYAAADVWYLLPLADQLMRETQDAGWMDAALDECLALCRRRK 191


>gi|261821503|ref|YP_003259609.1| ribonuclease D [Pectobacterium wasabiae WPP163]
 gi|261605516|gb|ACX88002.1| ribonuclease D [Pectobacterium wasabiae WPP163]
          Length = 374

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 4/181 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+    +A+DTE +       +L ++QL  G+    I  +     +      +L DE+  
Sbjct: 19  AQRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLT--ITDWAPFQALLRDEQVT 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V   TFG    P   T+I +         +G    + + +G+ + K++ 
Sbjct: 77  KFLHAGSEDLEVFLNTFGTLPTPFIDTQILAAFLGKPL-SYGFAALVADYMGVTLDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
            +DW A  LS++Q  YAA+DV +L  + +Q     +  G  + A   C  L  R + D+L
Sbjct: 136 RTDWLARPLSEKQCDYAAADVFYLLPMAIQLVTDTEAAGWMNAALDECLLLCQRKQ-DIL 194

Query: 197 G 197
            
Sbjct: 195 A 195


>gi|183599025|ref|ZP_02960518.1| hypothetical protein PROSTU_02469 [Providencia stuartii ATCC 25827]
 gi|188021240|gb|EDU59280.1| hypothetical protein PROSTU_02469 [Providencia stuartii ATCC 25827]
          Length = 374

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             + ++   C  A   D +A+DTE +       +L ++QL  G     I  ++    +  
Sbjct: 7   TTDSELAQVCQQASEADWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPLSIS--DFS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L ++   K  H G  D+ V  + F     P+  T++ +     Y    G    + 
Sbjct: 65  PFKALLTNKSLTKFLHAGSEDLEVFLHDFECVPEPMVDTQVIAAFL-GYPISCGFASLVS 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E LGI + K++  +DW A  LS++Q QYA +DV++L  L     +K++  G    A   C
Sbjct: 124 EYLGIELDKSESRTDWLARPLSEKQCQYATADVLYLLPLAKILMQKVEESGYLSAALEEC 183

Query: 185 NFLMDRAE 192
              ++R +
Sbjct: 184 QRTVERRQ 191


>gi|260580546|ref|ZP_05848374.1| ribonuclease D [Haemophilus influenzae RdAW]
 gi|260092888|gb|EEW76823.1| ribonuclease D [Haemophilus influenzae RdAW]
          Length = 399

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    V +L + K 
Sbjct: 45  LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLIDPLA--ITDFSPFVALLANPKV 102

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L + I K  
Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 161

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 162 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 216


>gi|261343835|ref|ZP_05971480.1| ribonuclease D [Providencia rustigianii DSM 4541]
 gi|282568219|gb|EFB73754.1| ribonuclease D [Providencia rustigianii DSM 4541]
          Length = 373

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             + ++   C  A     +A+DTE +       +L ++QL  G+    I  +     +  
Sbjct: 7   TTDSELAQVCQEASDAPWLALDTEFVRTRTYYPQLGLLQLYDGNQVSLIDPLL--MTDFS 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L +  + K  H G  D+ V  + FG    P+  T+I +     Y    G    + 
Sbjct: 65  PFKALLTNPNQLKFLHAGSEDLEVFIHDFGCVPEPMIDTQIVAAFL-GYPISCGFATLVV 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E LGI + K++  +DW A  LS +Q  YA +DV++L  L     EK+   G  D A   C
Sbjct: 124 EHLGIELDKSESRTDWLARPLSAKQCDYATADVLYLLPLAKILMEKVTEAGYLDDAKDEC 183

Query: 185 NFLMDRAE 192
             ++ R +
Sbjct: 184 QRVVARRQ 191


>gi|16272339|ref|NP_438552.1| ribonuclease D [Haemophilus influenzae Rd KW20]
 gi|1173094|sp|P44442|RND_HAEIN RecName: Full=Ribonuclease D; Short=RNase D
 gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd KW20]
          Length = 399

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    V +L + K 
Sbjct: 45  LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLIDPLA--ITDFSPFVALLANPKV 102

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L + I K  
Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 161

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 162 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 216


>gi|226329911|ref|ZP_03805429.1| hypothetical protein PROPEN_03824 [Proteus penneri ATCC 35198]
 gi|225200706|gb|EEG83060.1| hypothetical protein PROPEN_03824 [Proteus penneri ATCC 35198]
          Length = 372

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  +   C AA     IA+DTE + +      L ++Q+  G     I  +A   K+
Sbjct: 5   LITTDTALDTACKAASEASQIALDTEFVRIRTYYPHLGLIQMYDGKQISLIDPLA--IKD 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L ++   K  H G  D+ V  + FG    P+  T++ +     +    G    
Sbjct: 63  WTPFVELLTNQGIMKFLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GHPISCGFATL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++   + + K++  +DW A  L+++Q QYA+ DV +L  L  +  ++ +  G  D    
Sbjct: 122 VEKYENVALDKSESRTDWLARPLTEKQCQYASGDVFYLLPLAEKLIKEAEEAGYMDAIAD 181

Query: 183 CCNFLMDRAE 192
            C  + +R +
Sbjct: 182 ECEMIAERRQ 191


>gi|238796317|ref|ZP_04639826.1| Ribonuclease D [Yersinia mollaretii ATCC 43969]
 gi|238719762|gb|EEQ11569.1| Ribonuclease D [Yersinia mollaretii ATCC 43969]
          Length = 395

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 3/187 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I  ++G       AR    +A+DTE +       +L ++QL  G+    I  +       
Sbjct: 28  ITTNDGLQQVCEQARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEW 85

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
                +L D    K  H G  D+ V    F     P+  T++ +  +   +   G    +
Sbjct: 86  QPFRELLQDLNVVKYLHAGSEDLEVFLNAFDRMPTPMIDTQVLAAFS-GRSLSCGFAMLV 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            E  G+ + K++  +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   
Sbjct: 145 NEFEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDE 204

Query: 184 CNFLMDR 190
           C  L  R
Sbjct: 205 CELLCRR 211


>gi|288549752|ref|ZP_05968046.2| ribonuclease D [Enterobacter cancerogenus ATCC 35316]
 gi|288317705|gb|EFC56643.1| ribonuclease D [Enterobacter cancerogenus ATCC 35316]
          Length = 384

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
               ++ + C   R   AIA+DTE +       +L ++Q+  G     I  +  G  +  
Sbjct: 16  TTNDELASLCEVTRDFPAIALDTEFVRTRTYYPQLGLIQMYDGKRVSLIDPL--GITDWT 73

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            +  +L+D    K  H G  D+ V   TFG+  +P+  T+I +  +       G    ++
Sbjct: 74  PMRDLLLDTAVTKYLHAGSEDLEVFLNTFGIMPQPLIDTQILAAFSN-RPLSWGFAAMVE 132

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E  G+ + K++  +DW A  L+  QL+YAA+DV +L  +  Q  ++ +  G    A   C
Sbjct: 133 EYTGLTLDKSESRTDWLARPLTARQLEYAAADVFYLLPIAGQLMKESEASGWLSAALDEC 192

Query: 185 NFLMDRAE 192
                R +
Sbjct: 193 RMAQQRRQ 200


>gi|294635861|ref|ZP_06714315.1| ribonuclease D [Edwardsiella tarda ATCC 23685]
 gi|291090794|gb|EFE23355.1| ribonuclease D [Edwardsiella tarda ATCC 23685]
          Length = 376

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A     +A+DTE +       +L +VQL  G+    I  +     +    V +L + +  
Sbjct: 24  ASAFPYVALDTEFVRTRTYYPQLGLVQLYDGETLSLIDPLPIS--DWQPFVDLLRNPQVV 81

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H G  D+ V  + F    +P+  T+I +  T    +  G    +   LG+ + K++ 
Sbjct: 82  KLLHAGSEDLEVFLHDFQTLPQPLIDTQILAAFTGRPLSS-GFAAMVNAYLGVELDKSES 140

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS+ Q  YAA+DV +L  +  Q   +++  G    A   C  L  R
Sbjct: 141 RTDWLARPLSERQCDYAAADVYYLLPMAHQLLAEVEGCGWLPAALDECQALCRR 194


>gi|269138811|ref|YP_003295512.1| ribonuclease D [Edwardsiella tarda EIB202]
 gi|267984472|gb|ACY84301.1| ribonuclease D [Edwardsiella tarda EIB202]
 gi|304558803|gb|ADM41467.1| Ribonuclease D [Edwardsiella tarda FL6-60]
          Length = 371

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A     IA+DTE +       +L +VQL  G+    I  +     +    V +L + +  
Sbjct: 20  ASACPYIALDTEFVRTRTYYPQLGLVQLYDGETLSLIDPLPIS--DWQPFVDLLRNPQVV 77

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H G  D+ V  + F    +P+  T+I +  T    +  G    +   L +++ K++ 
Sbjct: 78  KLLHAGSEDLEVFLHDFQTLPQPLIDTQILAAFTGRPLSS-GFAAMVSAYLQVDLDKSES 136

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS+ Q  YAA+DV +L  +  +   +++  G    A   C  L  R
Sbjct: 137 RTDWLARPLSERQCDYAAADVYYLLPMAHKLLAEVEACGWLPAALDECQALCRR 190


>gi|332702439|ref|ZP_08422527.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
 gi|332552588|gb|EGJ49632.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
          Length = 409

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 3/178 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R  DA+ +DTE +        L ++QL    G   +  +  G  +   LV +L D +  
Sbjct: 42  LRGCDAVGMDTEFVRSRTYFPTLGLIQLVADGGVFLVDPL--GVDDLSPLVEILADPRLI 99

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KIFH  + D+  L+Y  G    PVF T++A+     Y  Q G    +K L G+ + K + 
Sbjct: 100 KIFHSCQEDLEALYYLCGFAPGPVFDTQVAASFL-GYGFQPGYGSLVKALFGVELDKDET 158

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
            S+W    LS+ QL YAA DV +L A+     + L   GR   A   C  L   A  +
Sbjct: 159 RSNWIKRPLSESQLIYAAQDVRYLPAMYSILGQALTEQGRLSWAREECAALEGEARFE 216


>gi|332161539|ref|YP_004298116.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318605521|emb|CBY27019.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325665769|gb|ADZ42413.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 373

 Score =  214 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +   Q        +L D    
Sbjct: 19  ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEKLSLIDPLPITQ--WQPFRELLQDVSVV 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F +   P+  T++ +  +   +   G    + EL G+ + K++ 
Sbjct: 77  KYLHAGSEDLEVFLNAFELMPTPMIDTQVLAAFS-GRSLSCGFAMLVNELEGVELDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLASKLVEATEAAGRMDAAKDECELLCRR 189


>gi|123442616|ref|YP_001006593.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122089577|emb|CAL12426.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 373

 Score =  214 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +   Q        +L D    
Sbjct: 19  ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQ--WQPFRELLQDLNVV 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F +   P+  T++ +  +   +   G    + E  G+ + K++ 
Sbjct: 77  KYLHAGSEDLEVFLNAFELMPTPMIDTQVLAAFS-GRSLSCGFAMLVNEFEGVELDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLATKLVEATEAAGRMDAAKDECELLCRR 189


>gi|238782530|ref|ZP_04626561.1| Ribonuclease D [Yersinia bercovieri ATCC 43970]
 gi|238716457|gb|EEQ08438.1| Ribonuclease D [Yersinia bercovieri ATCC 43970]
          Length = 395

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +            +L D    
Sbjct: 41  ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFRELLQDLAVV 98

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F     P+  T++ +  +   +   G    + E  G+ + K++ 
Sbjct: 99  KYLHAGSEDLEVFLNAFDRMPTPMIDTQVLAAFS-GRSLSCGFAMLVNEFEGVELDKSES 157

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 158 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECQLLCRR 211


>gi|300723126|ref|YP_003712424.1| RNase D, processes tRNA [Xenorhabdus nematophila ATCC 19061]
 gi|297629641|emb|CBJ90244.1| RNase D, processes tRNA precursor [Xenorhabdus nematophila ATCC
           19061]
          Length = 379

 Score =  214 bits (546), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 4/188 (2%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + + C  A+    IA+DTE +       +L ++QL  G+    I  +   Q    
Sbjct: 10  TTDAQLQSVCEQAKKHARIALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLEISQ--WQ 67

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +LVD    K+ H G  D+ V   +F     P+  T++ +     +    G    + 
Sbjct: 68  PLKALLVDPDVLKLIHAGSEDLEVFGNSFQCLPTPMIDTQVLAAFI-GHPISCGFATLVA 126

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           E L + + K++  +DW A  LS +Q +YAA+DV +L  L     +K ++ G  D A    
Sbjct: 127 EYLHVELDKSESRTDWLARPLSRKQCEYAAADVYYLLPLADILLKKTEQAGYFDAAKDES 186

Query: 185 NFLMDRAE 192
           + +  R +
Sbjct: 187 DLIAQRRK 194


>gi|148552971|ref|YP_001260553.1| ribonuclease D [Sphingomonas wittichii RW1]
 gi|148498161|gb|ABQ66415.1| ribonuclease D [Sphingomonas wittichii RW1]
          Length = 395

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 4/192 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
                 + VDTE +        LC++Q++  +    I   A      P L  ++ +E+  
Sbjct: 24  LAASPYVVVDTEFMRESTYWPDLCLIQIANSEEAAAIDPKAKDIDLTPLLDLLVENEEVL 83

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH G  D+ ++    G    P+F T++A+ +      Q G  + ++ +LGI + K  +
Sbjct: 84  KVFHAGGQDLEIVHNLTGKTPYPLFDTQVAA-MAMGLGEQIGYSNLVETMLGIKLDKGAR 142

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE---L 193
            +DW+   L   Q+ YA  DV HL A+  +  E+L++ GR     +    L D A    L
Sbjct: 143 FTDWARRPLDKRQIDYAIGDVTHLSAIFPRMLERLRKSGRGGWLDNEMERLGDPASYANL 202

Query: 194 DLLGWENVDIFS 205
             L W  + + S
Sbjct: 203 PELAWTRIRLPS 214


>gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7]
          Length = 396

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 9/197 (4%)

Query: 11  IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           + A C        IA+DTE +       RLC+VQ++  D    I  IA    +   L  +
Sbjct: 23  LAAFCGEIAGAQWIALDTEFVREKTYYPRLCLVQVATPDALACIDPIA--LPDLGPLAAL 80

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+ H    D+ +L  + G    PVF T++A  L   + +Q G    ++  L +
Sbjct: 81  LHDPAVTKVVHAAHQDMEILLQSTGRVPTPVFDTQVAVSLL-GHGDQIGYARMVQIYLDL 139

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K    +DWS   L   QL+YAA DV HL  +     + L+  GR D  +     + +
Sbjct: 140 ELDKGHTRTDWSQRPLETAQLRYAADDVRHLARVYPMILKDLEEKGRLDWLSEDFAAISE 199

Query: 190 RAEL----DLLGWENVD 202
            +      D   W  + 
Sbjct: 200 ESRYLPDPD-NAWRRIK 215


>gi|332992448|gb|AEF02503.1| ribonuclease D [Alteromonas sp. SN2]
          Length = 385

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 3/177 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE +        L ++QL  G   V I  +A    +    + ++ + + 
Sbjct: 18  LAQQQKAVALDTEFVRTRTLSPHLGLIQLYDGHQLVLIDPLA--IDDLSPFIALMENTRV 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    D+      F     PVF ++ A+ +        G    ++ L  +++ K +
Sbjct: 76  VKVLHSCSEDLETFLTAFNTVPTPVFDSQFAASIL-GLGASLGYAKLVELLCDVSLDKGE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
             +DW A  L + QL YAA+DV++L        EK+   G+ +        L D+  
Sbjct: 135 SRTDWIARPLREAQLSYAANDVLYLLPCYEHLVEKINEAGKLEWVYQEIAQLADKKR 191


>gi|253989912|ref|YP_003041268.1| ribonuclease D [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638250|emb|CAR66874.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781362|emb|CAQ84524.1| ribonuclease d (rnase d) [Photorhabdus asymbiotica]
          Length = 375

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 4/194 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  +   C  A+    IA+DTE +       +L ++QL  G+    I  +     N
Sbjct: 5   LITTDAQLQQVCERAKEYAKIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPL--NITN 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 ++ + +  K  H G  D+ V    F     P+  T++ +     +    G    
Sbjct: 63  WQPFRELITNPQILKFLHAGSEDLEVFLNAFQCLPEPMIDTQVLAAFI-GHPLSCGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + E + + + K++  +DW A  LS++Q +YAA+DV +L  L         + G  + A  
Sbjct: 122 VAEYIHVELDKSESRTDWLARPLSEKQCEYAAADVYYLLPLADILITATTQAGYMEAAIG 181

Query: 183 CCNFLMDRAELDLL 196
            C  +  R    L 
Sbjct: 182 ECELISQRRREILA 195


>gi|238794476|ref|ZP_04638085.1| Ribonuclease D [Yersinia intermedia ATCC 29909]
 gi|238726159|gb|EEQ17704.1| Ribonuclease D [Yersinia intermedia ATCC 29909]
          Length = 373

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +            +L D    
Sbjct: 19  ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFSELLQDLNVV 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F     P+  T+I +  +   T   G    + E  G+ + K++ 
Sbjct: 77  KYLHAGSEDLEVFLNAFSRMPTPMIDTQILAAFS-GRTLSCGFAMLVNEFEGVELDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECQLLCRR 189


>gi|293395838|ref|ZP_06640120.1| ribonuclease D [Serratia odorifera DSM 4582]
 gi|291421775|gb|EFE95022.1| ribonuclease D [Serratia odorifera DSM 4582]
          Length = 373

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 4/189 (2%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+   +  +   C  AR    IA+DTE +       +L ++QL  G+    I  +   Q 
Sbjct: 4   TLITTDAGLQQVCEQARKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQ- 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
                V +L D    K  H G  D+ V    F     P+  T+I +  T       G   
Sbjct: 63  -WQPFVDLLADSAVVKFLHAGSEDLEVFLNAFNTLPTPLVDTQILAAFTGKPL-SCGFAT 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            + + + + + K++  +DW A  L++ Q  YAA+DV +L  +  Q  ++ ++ G +  A+
Sbjct: 121 LVAQYMQVELDKSESRTDWLARPLTERQCVYAAADVFYLLPMARQLVQETEQAGWTAAAS 180

Query: 182 SCCNFLMDR 190
           S C  L  R
Sbjct: 181 SECLLLCQR 189


>gi|312882473|ref|ZP_07742214.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369873|gb|EFP97384.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 346

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 12/183 (6%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE +       +L ++QL  G     I        +    + +L D    K+ H   
Sbjct: 1   MLDTEFVRTRTYHPQLGLIQLYDGQNLSLIDP--KVIDDMSPFIDLLKDPSVLKVLHACG 58

Query: 84  FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143
            D+ V   +FG    P+  T++ +     +    G    +++ L + + K++  +DW A 
Sbjct: 59  EDLEVFHNSFGCLPHPMVDTQLMAAFL-GHGLSTGFAALVEQYLEVELDKSESRTDWLAR 117

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---------MDRAELD 194
            L+ +QL YAA+DV +L  L     EK++++G    A      L          D A LD
Sbjct: 118 PLTQKQLDYAAADVFYLKPLFSLLLEKIEQVGWWKAAQQESELLAVKRIKTIEPDLAYLD 177

Query: 195 LLG 197
           + G
Sbjct: 178 IKG 180


>gi|145638698|ref|ZP_01794307.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
 gi|145272293|gb|EDK12201.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
 gi|309750190|gb|ADO80174.1| Ribonuclease D [Haemophilus influenzae R2866]
          Length = 380

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    + +L + K 
Sbjct: 26  LAQQQSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLIDPLA--ITDFSPFIALLANPKV 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    D+ V    F    RP+  T+I +R         GL    ++ L + I K  
Sbjct: 84  LKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LS+ QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 143 TRTNWIKRPLSNIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197


>gi|301169093|emb|CBW28690.1| ribonuclease D [Haemophilus influenzae 10810]
          Length = 382

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    V +L + K 
Sbjct: 26  LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLSNPKV 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    D+ V    F    RP+  T+I +R         GL    ++ L + I K  
Sbjct: 84  LKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197


>gi|119775068|ref|YP_927808.1| ribonuclease D [Shewanella amazonensis SB2B]
 gi|119767568|gb|ABM00139.1| ribonuclease D [Shewanella amazonensis SB2B]
          Length = 371

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE +       +L ++Q+  G+    I  +    ++      +L +    K+ H  
Sbjct: 26  LVLDTEFVRTRTYYAKLGLIQVYDGNTLALIDPL--DIQDLSGFWALLTNPNILKLVHSC 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V      V+  P+F ++IA+ L+    +  G    ++E LG  + K +  +DW  
Sbjct: 84  SEDLEVFARYGKVQPTPLFDSQIAAALS-GMGHGLGYAKLVEECLGQTLDKGESRTDWIK 142

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
             L+D QLQYAA+DV +L+ L  Q  +KL+ LGR D        L +
Sbjct: 143 RPLTDAQLQYAANDVFYLYQLYPQLEQKLKTLGRFDWVLEEGARLTE 189


>gi|332307210|ref|YP_004435061.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174539|gb|AEE23793.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 391

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 5/189 (2%)

Query: 1   MTTIRVHEGD-IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           M  I +   + + A CA     +AIAVDTE +       +L ++Q+  G     I  +  
Sbjct: 1   MQYISITTNETLNAYCAQLAKAEAIAVDTEFVRTRTLYPKLGLIQIYDGQQIALIDPLEI 60

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              +   L  +L DE   K+ H    DI        +  +P+F ++ A+ +        G
Sbjct: 61  S--DFSALKAILTDENIVKVLHSCSEDIETFICALDIVPKPIFDSQFAAAIVGMGA-SLG 117

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
               ++ +L I + K +  +DW A  LS EQ +YAA DV++L+ L     +K +  GR  
Sbjct: 118 YAKLVEVMLDIQVDKGESRTDWLARPLSPEQCRYAAYDVLYLYQLYPTLRDKARAQGRQA 177

Query: 179 LATSCCNFL 187
              +  + L
Sbjct: 178 WVFAEMDNL 186


>gi|22126121|ref|NP_669544.1| ribonuclease D [Yersinia pestis KIM 10]
 gi|45441720|ref|NP_993259.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001]
 gi|108807454|ref|YP_651370.1| ribonuclease D [Yersinia pestis Antiqua]
 gi|108811715|ref|YP_647482.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|145598343|ref|YP_001162419.1| ribonuclease D [Yersinia pestis Pestoides F]
 gi|167469552|ref|ZP_02334256.1| ribonuclease D [Yersinia pestis FV-1]
 gi|186895427|ref|YP_001872539.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+]
 gi|21959080|gb|AAM85795.1|AE013826_7 RNase D [Yersinia pestis KIM 10]
 gi|45436582|gb|AAS62136.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001]
 gi|108775363|gb|ABG17882.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|108779367|gb|ABG13425.1| ribonuclease D [Yersinia pestis Antiqua]
 gi|145210039|gb|ABP39446.1| ribonuclease D [Yersinia pestis Pestoides F]
 gi|186698453|gb|ACC89082.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+]
          Length = 386

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    IA+DTE +       +L ++QL  G+    I  +            +L D    
Sbjct: 32  ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFRALLQDLNVV 89

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F     P+  T++ +  +   +   G    + E  G+ + K++ 
Sbjct: 90  KYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFS-GRSLSCGFAMLVAEFEGVELDKSES 148

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 149 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 202


>gi|238754880|ref|ZP_04616230.1| Ribonuclease D [Yersinia ruckeri ATCC 29473]
 gi|238706891|gb|EEP99258.1| Ribonuclease D [Yersinia ruckeri ATCC 29473]
          Length = 373

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR+   +A+DTE +       +L ++QL  G+    I  +            +L D+   
Sbjct: 19  ARHHAQVALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLP--ITEWQPFRELLQDQSVV 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F     P+  T++ +  T   T   G    + EL G+ + K++ 
Sbjct: 77  KFLHAGSEDLEVFLNAFQQLPTPMIDTQVLAAFT-GRTLSCGFAMLVAELQGVELDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  L+++Q  YAA+DV +L  +  Q     +  GR   A   C  L  R
Sbjct: 136 RTDWLARPLTEKQCDYAAADVFYLLPMAQQLVAATEAAGRMAAAEDECLLLCRR 189


>gi|227355430|ref|ZP_03839826.1| ribonuclease D [Proteus mirabilis ATCC 29906]
 gi|227164417|gb|EEI49301.1| ribonuclease D [Proteus mirabilis ATCC 29906]
          Length = 399

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
                  +   C AA  V  IA+DTE + +      L ++Q+  G     I  +      
Sbjct: 32  FITTNTALEDVCKAASEVSQIALDTEFVRIRTYYPHLGLIQMYDGKQISLIDPLT--ITE 89

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L +    K  H G  D+ V  + FG    P+  T++ +     Y    G    
Sbjct: 90  WTPFVELLTNPAVLKYLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GYPISCGFATL 148

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++   I + K++  +DW A  L+++Q QYA+ DV +L  L  +   + Q  G  D    
Sbjct: 149 VEKYEHIALDKSESRTDWLARPLTEKQCQYASGDVFYLLPLAKKLIAQAQEAGYMDAIVD 208

Query: 183 CCNFLMDRAE 192
            C  + +R +
Sbjct: 209 ECEMIAERRQ 218


>gi|145636341|ref|ZP_01792010.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
 gi|145270506|gb|EDK10440.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
          Length = 382

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    + +L + K 
Sbjct: 26  LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFIALLANPKV 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    D+ V    F    RP+  T+I +R         GL    ++ L + I K  
Sbjct: 84  LKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197


>gi|319426180|gb|ADV54254.1| ribonuclease D [Shewanella putrefaciens 200]
          Length = 369

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 3/166 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    + +DTE +       +L ++Q   G     I  +A    +   L  +L +    K
Sbjct: 21  QQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAKLWALLANPNIIK 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  
Sbjct: 79  LVHSCSEDLEVFAHYGQCQPVPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 137

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +DW    L++ QL YAA+DV++LH L  Q   KL   GR +     
Sbjct: 138 TDWIRRPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGRLNWLYEE 183


>gi|120599067|ref|YP_963641.1| ribonuclease D [Shewanella sp. W3-18-1]
 gi|120559160|gb|ABM25087.1| ribonuclease D [Shewanella sp. W3-18-1]
          Length = 367

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    + +DTE +       +L ++Q   G     I  +A    +      +L +    K
Sbjct: 19  QQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAKFWALLANPNIIK 76

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  
Sbjct: 77  LVHSCSEDLEVFAHYGQCQPVPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 135

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +DW    L++ QL YAA+DV++LH L  Q   KL   GR +     
Sbjct: 136 TDWIRRPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGRLNWLYEE 181


>gi|221134772|ref|ZP_03561075.1| ribonuclease D [Glaciecola sp. HTCC2999]
          Length = 382

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 3/189 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I  ++  +     A     IAVDTE +        + +VQ+  G     I  IA    + 
Sbjct: 8   IDSYDALLQYCQQAAQQSVIAVDTEFVRTRTFYPHIGLVQIYDGVDIALIDPIA--IDDL 65

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  ++ + +  K+ H    D+    +  GV   P+F T++A++L     N  G    +
Sbjct: 66  SPLSQLMTNPQVIKVLHACSEDLETFEFALGVMPEPLFDTQVAAQLA-GLGNSVGYGRLV 124

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + L  I + K +  +DW    LS EQL YAA DV++L     +  EKL+   +       
Sbjct: 125 ELLQDITLEKGESRTDWIRRPLSPEQLIYAAEDVLYLLPCYFKLAEKLEASQQLHWVYDE 184

Query: 184 CNFLMDRAE 192
            N L+ R  
Sbjct: 185 VNQLIRRKR 193


>gi|51596384|ref|YP_070575.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953]
 gi|149365996|ref|ZP_01888031.1| ribonuclease D [Yersinia pestis CA88-4125]
 gi|153949850|ref|YP_001400986.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758]
 gi|162421744|ref|YP_001606825.1| ribonuclease D [Yersinia pestis Angola]
 gi|165928352|ref|ZP_02224184.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938856|ref|ZP_02227410.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009317|ref|ZP_02230215.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166210648|ref|ZP_02236683.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401505|ref|ZP_02307002.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420357|ref|ZP_02312110.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424411|ref|ZP_02316164.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|170024358|ref|YP_001720863.1| ribonuclease D [Yersinia pseudotuberculosis YPIII]
 gi|218929182|ref|YP_002347057.1| ribonuclease D [Yersinia pestis CO92]
 gi|229894791|ref|ZP_04509971.1| ribonuclease D [Yersinia pestis Pestoides A]
 gi|229898140|ref|ZP_04513289.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902002|ref|ZP_04517123.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|270490819|ref|ZP_06207893.1| ribonuclease D [Yersinia pestis KIM D27]
 gi|294503859|ref|YP_003567921.1| ribonuclease D [Yersinia pestis Z176003]
 gi|51589666|emb|CAH21296.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953]
 gi|115347793|emb|CAL20710.1| ribonuclease D [Yersinia pestis CO92]
 gi|149292409|gb|EDM42483.1| ribonuclease D [Yersinia pestis CA88-4125]
 gi|152961345|gb|ABS48806.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758]
 gi|162354559|gb|ABX88507.1| ribonuclease D [Yersinia pestis Angola]
 gi|165913219|gb|EDR31842.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919635|gb|EDR36968.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991872|gb|EDR44173.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207828|gb|EDR52308.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962052|gb|EDR58073.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049201|gb|EDR60609.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056293|gb|EDR66062.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169750892|gb|ACA68410.1| ribonuclease D [Yersinia pseudotuberculosis YPIII]
 gi|229680898|gb|EEO76993.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|229688856|gb|EEO80923.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195]
 gi|229702264|gb|EEO90283.1| ribonuclease D [Yersinia pestis Pestoides A]
 gi|262362022|gb|ACY58743.1| ribonuclease D [Yersinia pestis D106004]
 gi|262365841|gb|ACY62398.1| ribonuclease D [Yersinia pestis D182038]
 gi|270339323|gb|EFA50100.1| ribonuclease D [Yersinia pestis KIM D27]
 gi|294354318|gb|ADE64659.1| ribonuclease D [Yersinia pestis Z176003]
 gi|320015246|gb|ADV98817.1| ribonuclease D [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 373

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    IA+DTE +       +L ++QL  G+    I  +            +L D    
Sbjct: 19  ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFRALLQDLNVV 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F     P+  T++ +  +   +   G    + E  G+ + K++ 
Sbjct: 77  KYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFS-GRSLSCGFAMLVAEFEGVELDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 189


>gi|85059311|ref|YP_455013.1| ribonuclease D [Sodalis glossinidius str. 'morsitans']
 gi|84779831|dbj|BAE74608.1| ribonuclease D [Sodalis glossinidius str. 'morsitans']
          Length = 380

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 3/175 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +AVDTE +       +L ++Q+  G+    I  +A    +    + +L DE+  K
Sbjct: 21  RQHPWVAVDTEFVRTCTYYPQLGLIQMFDGEALTLIDPLA--ITDWQPFIALLADEQVTK 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V +++FG    P+  T++ +  T       G    + E L + + K +  
Sbjct: 79  LLHACSEDLEVFWHSFGQMPVPMIDTQVLAAFT-GRALSCGFAALVAETLDVTLDKTESR 137

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           +DW A  LS  Q  YAA+DV  L  +  +   + Q+ G    A+  C  +  R  
Sbjct: 138 TDWLARPLSKRQCDYAAADVYWLLPMAHKLIAQTQQAGWWSQASQECEAICQRRR 192


>gi|37526051|ref|NP_929395.1| ribonuclease D [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785481|emb|CAE14428.1| Ribonuclease D (RNase D) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 375

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  +   C  A+    +A+DTE +       +L ++QL  G+    I  +     N
Sbjct: 5   LITTDAQLQQVCEGAKKYSKVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPL--NITN 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 ++   +  K+ H G  D+ V    F     P+  T++ +     +    G    
Sbjct: 63  WQPFRELITHPQILKLLHAGSEDLEVFLNAFQCLPEPMIDTQVLAAFI-GHPLSCGFAAL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + E + + + K++  +DW A  LS++Q +YAA+DV +L  L         + G  + AT 
Sbjct: 122 VAEYIHVELDKSESRTDWLARPLSEKQCEYAAADVYYLLPLADILMTATAQAGYMEAATG 181

Query: 183 CCNFLMDRAE 192
            C  +  R +
Sbjct: 182 ECRLISRRRK 191


>gi|238788499|ref|ZP_04632292.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641]
 gi|238723412|gb|EEQ15059.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641]
          Length = 394

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            AR    +A+DTE +       +L ++QL  G+    I  +            +L D   
Sbjct: 39  LARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFRELLQDLNV 96

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K  H G  D+ V    FG+   P+  T++ +  +   T   G    + E  G+ + K++
Sbjct: 97  VKYLHAGSEDLEVFLNAFGLMPTPMIDTQVLAAFS-GRTLSCGFAMLVNEFEGVELDKSE 155

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             +DW A  LS++Q  YAA+DV +L  L  +     +   R D A   C  L  R
Sbjct: 156 SRTDWIARPLSEKQCDYAAADVFYLLPLATKLVAATEAAERMDAAIDECQLLCRR 210


>gi|315634066|ref|ZP_07889355.1| ribonuclease D [Aggregatibacter segnis ATCC 33393]
 gi|315477316|gb|EFU68059.1| ribonuclease D [Aggregatibacter segnis ATCC 33393]
          Length = 385

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR   A+A+DTE + +     +L ++QL  GD    I       ++    + +L DE   
Sbjct: 30  ARTQSAVALDTEFVRVRTLHPKLGLIQLYAGDEVALIDP--TMIQDFSPFIALLADESVL 87

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  + F    +P+  T++ +     +    G    ++    I I K   
Sbjct: 88  KVLHACGEDLEVFQHYFQQLPQPMCDTQVMANFL-GFAGSAGFATLVQHYFHIEIDKGAS 146

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS+ QL+YAA+DV +L  L +Q   +L +        + C FL+ +
Sbjct: 147 RTDWLARPLSEIQLRYAAADVWYLLPLYVQMQTQLAQTEWQSAVKNECEFLLHK 200


>gi|260913969|ref|ZP_05920443.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
 gi|260632056|gb|EEX50233.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
          Length = 383

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  +   C  A+    +A+DTE + +     +L ++QL  G+    I  ++   ++
Sbjct: 16  LITTDQALADVCVFAQQKSVVALDTEFVRIRTLYPQLGLIQLYDGERVSLIDPLS--IQD 73

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               + +L ++   K+ H    D+ V  + +     P+  T+I +    ++ N  GL   
Sbjct: 74  FSPFIALLANQNVLKVLHACSEDLEVFQHYYQQMPTPMIDTQIMASFL-SFPNSTGLATL 132

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++    + I K    +DW A  LSD+QL YAA+DV +L  L  +  + LQ+        +
Sbjct: 133 IQHYFQLEIDKGASRTDWLARPLSDKQLVYAAADVWYLLPLYQRMQQDLQQTPWQSAVEN 192

Query: 183 CCNFLMDRAE 192
            C  L+ + E
Sbjct: 193 DCEMLLAKRE 202


>gi|146292862|ref|YP_001183286.1| ribonuclease D [Shewanella putrefaciens CN-32]
 gi|145564552|gb|ABP75487.1| ribonuclease D [Shewanella putrefaciens CN-32]
          Length = 367

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    + +DTE +       +L ++Q   G     I  +A    +      +L +    K
Sbjct: 19  QQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAKFWALLANPNIIK 76

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  
Sbjct: 77  LVHSCSEDLEVFAHYGQCQPVPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 135

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +DW    L++ QL YAA+DV++LH L  Q   KL   GR +     
Sbjct: 136 TDWIRRPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQGRLNWLYEE 181


>gi|329122266|ref|ZP_08250854.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
 gi|327473827|gb|EGF19244.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
          Length = 399

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    V +L + K 
Sbjct: 45  LAQMKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLSNPKV 102

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L I I K  
Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 161

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 162 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 216


>gi|319775680|ref|YP_004138168.1| ribonuclease D [Haemophilus influenzae F3047]
 gi|317450271|emb|CBY86487.1| ribonuclease D [Haemophilus influenzae F3047]
          Length = 380

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    V +L + K 
Sbjct: 26  LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLSNPKV 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    D+ V    F    RP+  T+I +R         GL    ++ L I I K  
Sbjct: 84  LKVLHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197


>gi|145628753|ref|ZP_01784553.1| ribonuclease D [Haemophilus influenzae 22.1-21]
 gi|144979223|gb|EDJ88909.1| ribonuclease D [Haemophilus influenzae 22.1-21]
          Length = 399

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    +  +A    +    V +L + K 
Sbjct: 45  LAQMKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLVDPLA--ITDFSPFVALLSNPKV 102

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L + I K  
Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNVEIDKGA 161

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 162 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 216


>gi|270262203|ref|ZP_06190475.1| hypothetical protein SOD_b04110 [Serratia odorifera 4Rx13]
 gi|270044079|gb|EFA17171.1| hypothetical protein SOD_b04110 [Serratia odorifera 4Rx13]
          Length = 373

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 3/180 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    IA+DTE +       +L ++QL  G+    I  +   Q      + +L D +  
Sbjct: 19  ARNHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQ--WQPFIDLLSDTQIV 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F     P+  T+I +  T       G    + E + +++ K++ 
Sbjct: 77  KFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFT-GRPLSCGFATLVTEYMQVDLDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
            +DW A  L+++Q  YAA+DV +L  +  Q  ++ +  G +  A + C  L  R    L 
Sbjct: 136 RTDWLARPLTEKQCVYAAADVFYLLPMAQQLVQETEDAGWTAAAANECLLLCQRRSESLA 195


>gi|308234516|ref|ZP_07665253.1| ribonuclease D [Atopobium vaginae DSM 15829]
 gi|328944110|ref|ZP_08241575.1| ribonuclease D [Atopobium vaginae DSM 15829]
 gi|327492079|gb|EGF23853.1| ribonuclease D [Atopobium vaginae DSM 15829]
          Length = 376

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I  +E  + + C  A   D +A+DTE +       +LC++QL+     V +  ++    +
Sbjct: 3   IETYE-QLASFCERATKSDVLAIDTEFMREKTFYPKLCLIQLATRSEIVLVDPLS--IPD 59

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             +L  + +D+K  KIFH    D+ +++  F    +PVF T++A+     +  Q G    
Sbjct: 60  LTDLCKLFLDKKITKIFHACSQDLELIYDIFSCLPKPVFDTQVAAAFL-GHRFQIGYGPL 118

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +  L  +++ KA+  +DW+   L++EQL+YAA DV +L  +      +L+   R      
Sbjct: 119 VDALCHVHLPKAESLTDWTRRPLAEEQLEYAADDVRYLPRMYDTLLHELKEKERYAWFLE 178

Query: 183 CC 184
             
Sbjct: 179 EM 180


>gi|148827593|ref|YP_001292346.1| ribonuclease D [Haemophilus influenzae PittGG]
 gi|148718835|gb|ABQ99962.1| ribonuclease D [Haemophilus influenzae PittGG]
          Length = 401

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    V +L + K 
Sbjct: 45  LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLANPKV 102

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L I I K  
Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 161

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 162 TLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELILAK 216


>gi|229897495|ref|ZP_04512651.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229693832|gb|EEO83881.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 308

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    IA+DTE +       +L ++QL  G+    I  +            +L D    
Sbjct: 32  ARTHAHIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP--ITEWQPFRALLQDLNVV 89

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F     P+  T++ +  +   +   G    + E  G+ + K++ 
Sbjct: 90  KYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFS-GRSLSCGFAMLVAEFEGVELDKSES 148

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 149 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAKDECLLLCRR 202


>gi|238756989|ref|ZP_04618177.1| Ribonuclease D [Yersinia aldovae ATCC 35236]
 gi|238704819|gb|EEP97348.1| Ribonuclease D [Yersinia aldovae ATCC 35236]
          Length = 373

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +   Q        +L D    
Sbjct: 19  ARTHTHVALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPLPITQ--WQPFRALLQDLSVV 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F     P+  T++ +  +   T   G    + E  GI + K++ 
Sbjct: 77  KYLHAGSEDLEVFLNAFEQMPTPMIDTQVLAAFS-GRTLSCGFAMLVNEFEGIELDKSES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   C  L  R
Sbjct: 136 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECELLCRR 189


>gi|15602571|ref|NP_245643.1| ribonuclease D [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720994|gb|AAK02790.1| Rnd [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 383

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 4/183 (2%)

Query: 11  IPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   C +A+    IA+DTE + +     +L ++QL  G+  V +I     Q  +P  + +
Sbjct: 23  LAEICYSAQQKAVIALDTEFVRIKTLYPQLGLIQLYDGE-RVSLIDPTTIQDFSP-FIAL 80

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L +    K+ H    D+ V  ++F     P+  T+I +     + N  GL   ++    +
Sbjct: 81  LANTAVLKVLHACSEDLEVFQHSFNQLPTPMLDTQIMANFL-GFPNSTGLATLVQHYFQL 139

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            I K    +DW A  LSD QL YAA+DV +L  L  +  E L +    + A   C  L+ 
Sbjct: 140 EIDKGASRTDWLARPLSDNQLIYAAADVWYLLPLYQRMQEALAQTRWQEAAQQDCEALLL 199

Query: 190 RAE 192
           + E
Sbjct: 200 KRE 202


>gi|238751610|ref|ZP_04613100.1| Ribonuclease D [Yersinia rohdei ATCC 43380]
 gi|238710172|gb|EEQ02400.1| Ribonuclease D [Yersinia rohdei ATCC 43380]
          Length = 394

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +   Q        ++ D    
Sbjct: 40  ARKHAHVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPITQ--WQPFRELIQDLNVV 97

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V    F     P+  T++ +  +   +   G    + E  G+ + K++ 
Sbjct: 98  KYLHAGSEDLEVFLNAFDQMPTPMIDTQVLAAFS-GRSLSCGFAMLVNEFEGVELDKSES 156

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS++Q  YAA+DV +L  L  +  E  +  GR D A   CN L  R
Sbjct: 157 RTDWIARPLSEKQCDYAAADVFYLLPLAAKLVEATEAAGRMDAAIDECNLLCRR 210


>gi|260582345|ref|ZP_05850138.1| ribonuclease D [Haemophilus influenzae NT127]
 gi|260094713|gb|EEW78608.1| ribonuclease D [Haemophilus influenzae NT127]
          Length = 380

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G     I  +A    +    V +L + K 
Sbjct: 26  LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGKHVSLIDPLA--ITDFSPFVALLANPKV 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L I I K  
Sbjct: 84  LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197


>gi|327484520|gb|AEA78927.1| Ribonuclease D [Vibrio cholerae LMA3894-4]
          Length = 348

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 13/186 (6%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE +       +L ++Q+  G+    I             V +L D    K+ H   
Sbjct: 1   MLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDEMTPFVELLQDTSVLKVLHACG 58

Query: 84  FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143
            D+ V    FG    P+  T+I +     Y    G    +++ L + + K++  +DW A 
Sbjct: 59  EDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQLQVELDKSESRTDWLAR 117

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---------MDRAELD 194
            LSD+QL+YAA+DV +L  +  +  E++ + G  D A                 + A LD
Sbjct: 118 PLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQESELQVAKRTKVSNPELAYLD 177

Query: 195 LLG-WE 199
           + G W+
Sbjct: 178 IKGAWQ 183


>gi|197285028|ref|YP_002150900.1| ribonuclease D [Proteus mirabilis HI4320]
 gi|194682515|emb|CAR42495.1| ribonuclease D [Proteus mirabilis HI4320]
          Length = 372

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
                  +   C AA  V  IA+DTE + +      L ++Q+  G     I  +      
Sbjct: 5   FITTNTALEDVCKAASEVSQIALDTEFVRIRTYYPHLGLIQMYDGKQISLIDPLT--ITE 62

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               V +L +    K  H G  D+ V  + FG    P+  T++ +     Y    G    
Sbjct: 63  WTPFVELLTNPAVLKYLHAGSEDLEVFSHQFGCVPTPMIDTQVVAAFL-GYPISCGFATL 121

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +++   I + K++  +DW A  L+++Q QYA+ DV +L  L  +   + Q  G  D    
Sbjct: 122 VEKYEHIALDKSESRTDWLARPLTEKQCQYASGDVFYLLPLAKKLIAQAQEAGYMDAIVD 181

Query: 183 CCNFLMDRAE 192
            C  + +R +
Sbjct: 182 ECEMIAERRQ 191


>gi|223041446|ref|ZP_03611649.1| ribonuclease D [Actinobacillus minor 202]
 gi|223017704|gb|EEF16111.1| ribonuclease D [Actinobacillus minor 202]
          Length = 373

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 8/197 (4%)

Query: 3   TIRVH----EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
           TI  H       +   C  A    AIA+DTE + +     +L ++QL  G+    I    
Sbjct: 4   TIHYHWVSTSQQLDEVCQKAATKKAIALDTEFIRIRSFYPQLGLIQLFDGEQVSLIDP-- 61

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
           +  ++    + +L +    K+ H    D+ V  Y F     P+  T++ +          
Sbjct: 62  SSIEDFSPFIALLANPDVIKVLHACSEDLEVFEYRFKQLPTPLVDTQVVAGFLN-RGISI 120

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           G    ++  L I + K    +DW A  LS+ Q QYAA+DV +L  +  +  ++L      
Sbjct: 121 GFAKLVEHYLHIELDKGASRTDWLARPLSEIQCQYAAADVFYLLPVYHKMQKELSENRWQ 180

Query: 178 DLATSCCNFLMDRAELD 194
                 C   + R   D
Sbjct: 181 KAVEEECQKFLHRKLKD 197


>gi|157370999|ref|YP_001478988.1| ribonuclease D [Serratia proteamaculans 568]
 gi|157322763|gb|ABV41860.1| ribonuclease D [Serratia proteamaculans 568]
          Length = 390

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  +   C  A+    IA+DTE +       +L ++QL  G+    I  +   Q  
Sbjct: 22  LITTDAGLQQVCDQAKKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQ-- 79

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               + +L + +  K  H G  D+ V    F     P+  T+I +  T       G    
Sbjct: 80  WQPFIELLSNTQVVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFT-GRPMSCGFATL 138

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + E + + + K++  +DW A  L+++Q  YAA+DV +L  +  +  ++ +  G +  A++
Sbjct: 139 VAEYMEVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRLVQETEEAGWTAAASN 198

Query: 183 CCNFLMDR 190
            C  L  R
Sbjct: 199 ECLLLCQR 206


>gi|319898087|ref|YP_004136284.1| ribonuclease d [Haemophilus influenzae F3031]
 gi|317433593|emb|CBY81977.1| ribonuclease D [Haemophilus influenzae F3031]
          Length = 380

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    V +L + K 
Sbjct: 26  LAQMKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLSNPKV 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L I I K  
Sbjct: 84  LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197


>gi|229846478|ref|ZP_04466586.1| ribonuclease D [Haemophilus influenzae 7P49H1]
 gi|229810571|gb|EEP46289.1| ribonuclease D [Haemophilus influenzae 7P49H1]
          Length = 380

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    V +L + K 
Sbjct: 26  LAQQQSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLSNPKV 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L I I K  
Sbjct: 84  LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGTSAGLAKLAQQYLNIEIDKGA 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C  ++ +
Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELVLAK 197


>gi|126174091|ref|YP_001050240.1| ribonuclease D [Shewanella baltica OS155]
 gi|125997296|gb|ABN61371.1| ribonuclease D [Shewanella baltica OS155]
          Length = 369

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 3/166 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    + +DTE +       +L ++Q   G     I  +A    +      +L D    K
Sbjct: 21  KQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAQFWALLSDPNIVK 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  
Sbjct: 79  LVHSCSEDLEVFAHYGKCQPTPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 137

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +DW    L++ QL YAA+DV++L+ L  Q   KL   GR       
Sbjct: 138 TDWIRRPLTEAQLSYAANDVLYLYQLYPQLEAKLSAQGRLAWLYEE 183


>gi|167855622|ref|ZP_02478381.1| ribonuclease D [Haemophilus parasuis 29755]
 gi|167853249|gb|EDS24504.1| ribonuclease D [Haemophilus parasuis 29755]
          Length = 388

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 3/173 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             IA+DTE +       +L ++QL  G     I  ++    +      +L +E   K+ H
Sbjct: 40  SVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLS--ITDFSPFTALLTNENVLKVLH 97

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+ V  + F    +P+  T++ +          G        L + + K    +DW
Sbjct: 98  ACSEDLEVFQHYFKQLPQPMLDTQVMAGFV-GIGISIGFAKLALHYLEVELDKGASRTDW 156

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
            +  LS+ QLQYA +DV +L  +  +  E L +          C  L+ + ++
Sbjct: 157 LSRPLSEIQLQYACADVWYLLPIYHKLAEDLAKTLWQTAVVEECATLLAKRQI 209


>gi|163752438|ref|ZP_02159629.1| ribonuclease D [Shewanella benthica KT99]
 gi|161327662|gb|EDP98855.1| ribonuclease D [Shewanella benthica KT99]
          Length = 380

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 3/166 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R  D + +DTE +       RL ++Q   G     I  +A    N     G+L +     
Sbjct: 29  RQSDLLVLDTEFVRTRTFYARLGLIQAYDGKTLALIDPVAVN--NLSEFWGLLAEPGITT 86

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V       +   +F ++IA+ L     +  G    +++ L I++ K +  
Sbjct: 87  VLHSCSEDLEVFARNGHCQPANLFDSQIAAALC-GLGHGLGYAKLVEQTLDISLDKGESR 145

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +DW    LS+ QL YAA+DV +L+ L  Q  EKLQ+ GR       
Sbjct: 146 TDWMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQQQGRLAWVIEE 191


>gi|52425412|ref|YP_088549.1| ribonuclease D [Mannheimia succiniciproducens MBEL55E]
 gi|52307464|gb|AAU37964.1| Rnd protein [Mannheimia succiniciproducens MBEL55E]
          Length = 380

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 4/188 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  +   CA A    AIA+DTE + +     +L ++QL  G+    I       ++
Sbjct: 16  LITDDEALADVCARASTKSAIALDTEFVRIRSYYPKLGLIQLYDGEQVSLIDP--QEIQD 73

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L D K  K+ H    D+ V  + +     P+  T+I +     + N  GL   
Sbjct: 74  FSPFKQLLADPKILKVLHACHEDLEVFQHYYQQLPAPMLDTQIMANFL-GFQNSMGLASL 132

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +K    + I K    +DW A  LS+ QL YAA+DV +L  L  +    L++         
Sbjct: 133 IKHYFNLEIDKGASRTDWLARPLSNRQLAYAAADVWYLLPLYCKMQNALEQTRWQSAVEF 192

Query: 183 CCNFLMDR 190
            CN L+++
Sbjct: 193 DCNLLLEK 200


>gi|157962268|ref|YP_001502302.1| ribonuclease D [Shewanella pealeana ATCC 700345]
 gi|157847268|gb|ABV87767.1| ribonuclease D [Shewanella pealeana ATCC 700345]
          Length = 369

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 1   MTTIRVHEGDIP-AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
           M   +  E D   A    +Y DA  + +DTE +       RL ++Q   G     I  +A
Sbjct: 1   MLAFQYIEDDASLAALVEQYQDADLLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPLA 60

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                      +L  E   K+ H    D+ V       +   +F ++IA+ L     +  
Sbjct: 61  VSNLEL--FWQLLSKESSVKLLHSCSEDLEVFARYGNCQPTNLFDSQIAAGLA-GMGHGL 117

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           G    +++ L +++ K +  +DW    L++ QL YAA+DV +L+ L  Q  + L+  GR 
Sbjct: 118 GYAKLVEQTLEVSLDKGESRTDWLKRPLTEAQLNYAANDVYYLYKLYPQLVKLLEEQGRL 177

Query: 178 DLATSC 183
           D     
Sbjct: 178 DWVYEE 183


>gi|153000417|ref|YP_001366098.1| ribonuclease D [Shewanella baltica OS185]
 gi|160875014|ref|YP_001554330.1| ribonuclease D [Shewanella baltica OS195]
 gi|217973594|ref|YP_002358345.1| ribonuclease D [Shewanella baltica OS223]
 gi|151365035|gb|ABS08035.1| ribonuclease D [Shewanella baltica OS185]
 gi|160860536|gb|ABX49070.1| ribonuclease D [Shewanella baltica OS195]
 gi|217498729|gb|ACK46922.1| ribonuclease D [Shewanella baltica OS223]
 gi|315267246|gb|ADT94099.1| ribonuclease D [Shewanella baltica OS678]
          Length = 369

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 3/166 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    + +DTE +       +L ++Q   G     I  +A    +      +L D    K
Sbjct: 21  KQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAQFWALLSDPNIIK 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  
Sbjct: 79  LVHSCSEDLEVFAHYGKCQPTPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 137

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +DW    L++ QL YAA+DV++L+ L  Q   KL   GR       
Sbjct: 138 TDWIRRPLTEAQLSYAANDVLYLYQLYPQLEAKLSAQGRLAWLYEE 183


>gi|262167934|ref|ZP_06035634.1| ribonuclease D [Vibrio cholerae RC27]
 gi|262023661|gb|EEY42362.1| ribonuclease D [Vibrio cholerae RC27]
          Length = 348

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 13/186 (6%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE +       +L ++Q+  G+    I             V +L D    K+ H   
Sbjct: 1   MLDTEFVRTRTFFPQLGLIQMFDGENLSLIDP--TVLDEMTPFVELLQDTSVLKVLHACG 58

Query: 84  FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143
            D+ V    FG    P+  T+I +     Y    G    +++ L + + K++  +DW A 
Sbjct: 59  EDLEVFQNAFGCTPFPMVDTQIMAAFL-GYGLSTGFAALVQDQLQVELDKSESRTDWLAR 117

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---------MDRAELD 194
            LSD+QL+YAA+DV +L  +  +  E++ + G  D A                 + A LD
Sbjct: 118 PLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQESELQVAKRTKVSNPELAYLD 177

Query: 195 LLG-WE 199
           + G W+
Sbjct: 178 IKGAWQ 183


>gi|212635098|ref|YP_002311623.1| ribonuclease D [Shewanella piezotolerans WP3]
 gi|212556582|gb|ACJ29036.1| Ribonuclease D [Shewanella piezotolerans WP3]
          Length = 369

 Score =  210 bits (536), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 7/197 (3%)

Query: 1   MTTIRVHEGD--IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
           M   +  + D  + A  A  R    + +DTE +       RL ++Q   G     I  +A
Sbjct: 1   MLAFQYIDDDTSLAALVAQYREAKLLVIDTEFVRTRTYYARLGLIQAYDGKTLALIDPLA 60

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
               N      +L D    K+ H    D+ V       +   +F ++IA+ L        
Sbjct: 61  V--TNLSLFWALLTDSSIIKLLHSCSEDLEVFAKNGACQPNKLFDSQIAAGLC-GMGYGL 117

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           G    +++ L I + K +  +DW    LS+ QL YAA+DV +L+ L  Q  +KL+  GR 
Sbjct: 118 GYAKLVEQTLDITLDKGESRTDWLKRPLSEAQLNYAANDVYYLYELYPQLVDKLESQGRL 177

Query: 178 DLATSCCNFLMDRAELD 194
           D        +  +  LD
Sbjct: 178 DWVYEDGERM-TQGRLD 193


>gi|238919524|ref|YP_002933039.1| ribonuclease D [Edwardsiella ictaluri 93-146]
 gi|238869093|gb|ACR68804.1| ribonuclease D, putative [Edwardsiella ictaluri 93-146]
          Length = 371

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A     IA+DTE +       +L +VQL  G+    I  +     +    V +L + +  
Sbjct: 20  ASACPYIALDTEFVRTRTYYPQLGLVQLYDGEMLSLIDPLTIS--DWQPFVDLLRNPQVV 77

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  + F    +P+  T+I +  +    +  G    +   L +++ K++ 
Sbjct: 78  KLLHASSEDLEVFLHDFQTLPQPLIDTQILAAFSGRPLSS-GFAAMVSAYLQVDLDKSES 136

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW A  LS+ Q  YAA+DV +L  +  +   +++  G    A   C  L  R
Sbjct: 137 RTDWLARPLSERQCDYAAADVYYLLPMAHKLLAEVEACGWLPSALDECQALCRR 190


>gi|170717427|ref|YP_001784527.1| ribonuclease D [Haemophilus somnus 2336]
 gi|168825556|gb|ACA30927.1| ribonuclease D [Haemophilus somnus 2336]
          Length = 381

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+    IA+DTE +       +L ++QL  G+    I        +    + +L ++K  
Sbjct: 30  AQQKTVIALDTEFVRTKSFYPKLGLIQLYDGEQVSLIDPFELN--DFSPFIQLLANQKVT 87

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  + F     P+  T+I +   + + N  GL   LK    + I K   
Sbjct: 88  KVLHACSEDLEVFQHYFQQLPTPMLDTQIMAAFLQ-HGNSIGLATLLKHYFKLEIDKGIS 146

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            ++W A  LSD QL YAA+DV +L  L  +  +KL +        + C  L+ +
Sbjct: 147 RTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTSWQSAVQNDCENLLKK 200


>gi|302335597|ref|YP_003800804.1| ribonuclease D [Olsenella uli DSM 7084]
 gi|301319437|gb|ADK67924.1| ribonuclease D [Olsenella uli DSM 7084]
          Length = 376

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 3/170 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            +A+DTE L       RLC++Q +  D +  I  I     +   L  +L DE   K+FH 
Sbjct: 21  VLAIDTEFLRERTYFPRLCLIQAATPDESAAIDPIL--IDDLSPLARLLTDESITKVFHA 78

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+ V++        P+F T++A+     +  Q G    +    G+ + KA+  +DWS
Sbjct: 79  CSQDLEVIYDALHCVPGPIFDTQLAAAFL-GHRQQIGYGALVDACCGVRLPKAESLTDWS 137

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
              L  EQL YA  DV +L  +  Q   +L    R          L+  A
Sbjct: 138 RRPLDAEQLAYAEDDVRYLPGIYDQMMAELIMRDRLPWLAPEMAELVSPA 187


>gi|145632638|ref|ZP_01788372.1| ribonuclease D [Haemophilus influenzae 3655]
 gi|144986833|gb|EDJ93385.1| ribonuclease D [Haemophilus influenzae 3655]
 gi|309972450|gb|ADO95651.1| Ribonuclease D [Haemophilus influenzae R2846]
          Length = 380

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    + +L + K 
Sbjct: 26  LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFIALLANPKV 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F     P+  T+I +R         GL    ++ L I I K  
Sbjct: 84  LKILHSCSEDLLVFLQEFDQLPHPMIDTQIMARFI-GLGASAGLAKLAQQYLNIEIDKGA 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C   + +
Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALSK 197


>gi|145640347|ref|ZP_01795931.1| ribonuclease D [Haemophilus influenzae R3021]
 gi|145274933|gb|EDK14795.1| ribonuclease D [Haemophilus influenzae 22.4-21]
          Length = 380

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    + +L + K 
Sbjct: 26  LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFIALLANPKV 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L + I K  
Sbjct: 84  LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNVEIDKGA 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +       +  C   + +
Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALAK 197


>gi|148825327|ref|YP_001290080.1| ribonuclease D [Haemophilus influenzae PittEE]
 gi|148715487|gb|ABQ97697.1| translation-associated GTPase [Haemophilus influenzae PittEE]
          Length = 380

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    + +L + K 
Sbjct: 26  LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFIALLANPKV 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L I I K  
Sbjct: 84  LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNIEIDKGA 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +       +  C   + +
Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALSK 197


>gi|24374123|ref|NP_718166.1| ribonuclease D [Shewanella oneidensis MR-1]
 gi|24348616|gb|AAN55610.1|AE015699_8 ribonuclease D [Shewanella oneidensis MR-1]
          Length = 367

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 4/184 (2%)

Query: 1   MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M      E  + A  A  +    + +DTE +       +L ++Q   G     I  IA  
Sbjct: 1   MFQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPIA-- 58

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +      +L +    K+ H    D+ V  +    +  P+F ++IA+ L     +  G 
Sbjct: 59  LPDLSAFWALLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLC-GMGHGLGY 117

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++  LG  I K +  +DW    L+D QL YAA+DV++L+ L  Q  EKLQ   R D 
Sbjct: 118 AKLVETCLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQDRLDW 177

Query: 180 ATSC 183
               
Sbjct: 178 LYEE 181


>gi|304411369|ref|ZP_07392983.1| ribonuclease D [Shewanella baltica OS183]
 gi|307305309|ref|ZP_07585057.1| ribonuclease D [Shewanella baltica BA175]
 gi|304350224|gb|EFM14628.1| ribonuclease D [Shewanella baltica OS183]
 gi|306911612|gb|EFN42037.1| ribonuclease D [Shewanella baltica BA175]
          Length = 369

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 3/172 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    + +DTE +       +L ++Q   G     I  +A    +      +L D    K
Sbjct: 21  KQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLAQFWALLSDPNIIK 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  
Sbjct: 79  LVHSCSEDLEVFAHYGKCQPTPLFDSQIAASLC-GMGHGVGYAKLVETCLGEVIDKGESR 137

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +DW    L++ QL YAA+DV++L+ L  Q   KL   GR          +  
Sbjct: 138 TDWIRRPLTEAQLSYAANDVLYLYQLYPQLEAKLSVQGRLAWLYEEGERMTQ 189


>gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1]
 gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1]
          Length = 399

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    V +L + K 
Sbjct: 45  LAQQQSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLANPKV 102

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L I I K  
Sbjct: 103 LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 161

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C   + +
Sbjct: 162 TLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALAK 216


>gi|290475404|ref|YP_003468292.1| RNase D, processes tRNA [Xenorhabdus bovienii SS-2004]
 gi|289174725|emb|CBJ81524.1| RNase D, processes tRNA precursor [Xenorhabdus bovienii SS-2004]
          Length = 385

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 3/180 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+    IA+DTE +       +L ++QL  G+    I  +            +L D    
Sbjct: 29  AKKHATIALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDPL--DISEWQPFRELLTDRDVL 86

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K  H G  D+ V + +F     P+  T++ +     +    G    + + L + + K++ 
Sbjct: 87  KFIHAGSEDLEVFWNSFQCLPTPMIDTQVLAAFI-GHPMSCGFATLVAQYLHVELDKSES 145

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
            +DW A  LS++Q +YAA+DV +L  L        ++ G    A      +  R +  L+
Sbjct: 146 RTDWLARPLSEKQCEYAAADVYYLLPLADILMAATEQAGYMGAAQDESYLIAQRRKEILM 205


>gi|256827062|ref|YP_003151021.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
 gi|256583205|gb|ACU94339.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
          Length = 399

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 4/191 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
               + ++ A    A     +A+DTE L       RLC++Q+   D T+ +   A    +
Sbjct: 20  FITDQAELEAFAKRALDSSVLAIDTEFLREKTYYARLCLLQMQTDDETIIVDPFAVS--D 77

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +       KI H GR D+ +L    G+  +P+F T++A+ L   +T Q G    
Sbjct: 78  LGVLAPLFQSSSIMKIVHSGRQDLEILNREVGLLPQPLFDTQVAAALL-GHTQQIGYGSL 136

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +  + G+ ++K    +DWS   LS  Q+ YAA DV++L  L    T++L+RLGR      
Sbjct: 137 VSAVCGVQLAKMDSFTDWSRRPLSASQISYAADDVIYLPQLYHTMTDELERLGRIHWLDP 196

Query: 183 CCNFLMDRAEL 193
               L+D A  
Sbjct: 197 DFAALIDPALY 207


>gi|307825065|ref|ZP_07655286.1| ribonuclease D [Methylobacter tundripaludum SV96]
 gi|307733813|gb|EFO04669.1| ribonuclease D [Methylobacter tundripaludum SV96]
          Length = 389

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 3/178 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    +A+DTE L       + C++Q++  +    I  IA    +   L   +      K
Sbjct: 22  KKEPWLALDTEFLREKTYYPKFCLLQIATPEWVACIDPIALPSLD--ILFEAIYSPSIVK 79

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +FH  R D+ + +   G    P+F T+IA+ L   +    G    +  LL +N++KA   
Sbjct: 80  VFHSCRQDLEIFYQLTGKLPEPLFDTQIAAPLL-GFQENPGYAMLVSSLLNVNLNKAHTR 138

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           +DWS   L D ++QYAA DV++L  +     +KL  LGR++        L +    ++
Sbjct: 139 ADWSKRPLIDAEIQYAADDVIYLCKIYQMMLQKLAELGRAEWLERDFAELANPDLYEV 196


>gi|127513115|ref|YP_001094312.1| ribonuclease D [Shewanella loihica PV-4]
 gi|126638410|gb|ABO24053.1| ribonuclease D [Shewanella loihica PV-4]
          Length = 368

 Score =  209 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 3/166 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    + +DTE +       +L ++Q+  G+    I  +A    +      +L  +    
Sbjct: 20  RQAKVLMLDTEFVRTRTYYAKLGLIQVYDGETLALIDPVAVS--DLSAFWALLERDDMIS 77

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ VL      + + +F ++IA+     + +  G    ++  LG+ + K +  
Sbjct: 78  VLHSCSEDLEVLARYGRCQPKVLFDSQIAAAFC-GWGHGMGYAKLVEHCLGVQLDKGESR 136

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +DW    LSD QLQYAA+DV +L+ L  Q  EKLQ  GR       
Sbjct: 137 TDWMKRPLSDAQLQYAANDVDYLYRLYPQLLEKLQESGRMPWLLEE 182


>gi|145634613|ref|ZP_01790322.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
 gi|145268158|gb|EDK08153.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
          Length = 362

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    V +L + K 
Sbjct: 8   LAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPLA--ITDFSPFVALLANPKV 65

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L + I K  
Sbjct: 66  LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFI-GLGASAGLAKLAQQYLNVEIDKGA 124

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +       +  C   + +
Sbjct: 125 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCELALAK 179


>gi|113460879|ref|YP_718946.1| ribonuclease D [Haemophilus somnus 129PT]
 gi|112822922|gb|ABI25011.1| ribonuclease D [Haemophilus somnus 129PT]
          Length = 381

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+    IA+DTE +       +L ++QL  G+    I        +    + +L ++K  
Sbjct: 30  AQQKTVIALDTEFVRTKSFYPKLGLIQLYDGEQVSLIDPFELS--DFSPFIQLLANQKVT 87

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  + F     P+  T+I +   + + N  GL   LK    + I K   
Sbjct: 88  KVLHACSEDLEVFQHYFQQLPTPMLDTQIMAAFLQ-HGNSIGLAILLKHYFKLEIDKGIS 146

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            ++W A  LSD QL YAA+DV +L  L  +  +KL +        + C  L+++
Sbjct: 147 RTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTSWQSAVQNDCENLLNK 200


>gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799]
 gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799]
          Length = 374

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           ++ D+ A C   R  DA+A+DTE +       +L ++QL  G+    I  +   Q   P 
Sbjct: 12  NDDDLAALCRQCRQKDAVALDTEFVRTRTLHAQLGLIQLYDGETLALIDPL-EIQDLGP- 69

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  ++ D+   K+ H    D+ +  Y  GV  +P+F T++A  L        G    +  
Sbjct: 70  LWQLIADKNVVKVLHSASEDLEIFAYRGGVIPQPLFDTQVAGVLLNLGG-AMGYGKLIHH 128

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            LG+ + K +  +DW    LS++QL YAA+DV +L  +       ++ +GR D     
Sbjct: 129 YLGLELDKGEARTDWLKRPLSEKQLTYAAADVYYLLQVYRMMRPAIEEMGRLDWLWQE 186


>gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469]
 gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469]
          Length = 379

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 3/169 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+    +AVDTE L       +LC+VQ+S G     I  +     +   L  +L + +  
Sbjct: 19  AKTSHILAVDTEFLREKTYFPKLCLVQVSTGSEIAAIDPLL--IDDLTPLKELLENPEIV 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    D+ VL         PVF T++A+        Q      ++    + ++KA+ 
Sbjct: 77  KILHACSQDLEVLLEKMDCACAPVFDTQVAAAFLGMR-QQVSYAGLVENFANVKLAKAES 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
            +DWS   L  EQL YA  DV +L A+  Q  EKL +L R        +
Sbjct: 136 LTDWSKRPLDKEQLVYAEDDVRYLPAIYNQMVEKLIKLDRLSWLKPEMD 184


>gi|192361069|ref|YP_001982899.1| ribonuclease D [Cellvibrio japonicus Ueda107]
 gi|190687234|gb|ACE84912.1| ribonuclease D [Cellvibrio japonicus Ueda107]
          Length = 378

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 5/192 (2%)

Query: 3   TIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
            I +   D  AE     R   AIAVDTE +          ++Q+  G G   I  +A   
Sbjct: 7   PIWIERADQLAELCVGWRQQGAIAVDTEFMRTDTFYPIAGLLQIGDGKGCYLIDPLAIA- 65

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +   L  +L+D K  K+ H    D+ V      +   P+F T+I +          G  
Sbjct: 66  -DWQPLRELLLDGKVIKVLHSCSEDLEVFQRWLDLVPSPLFDTQIGAAFANLGF-GLGYA 123

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           + +K LLGI I K +  SDW    LS  QL+YAA DV H+  +  +  + L+   R +  
Sbjct: 124 NLVKTLLGIEIPKDETRSDWLQRPLSQSQLKYAALDVAHMLVVYGKLLQILKTSQRLEWV 183

Query: 181 TSCCNFLMDRAE 192
            S C  L+++A 
Sbjct: 184 KSDCADLVEQAR 195


>gi|152978783|ref|YP_001344412.1| ribonuclease D [Actinobacillus succinogenes 130Z]
 gi|150840506|gb|ABR74477.1| ribonuclease D [Actinobacillus succinogenes 130Z]
          Length = 383

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 3/176 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A+   A+A+DTE + +     +L ++QL  G+    I        +      +L D    
Sbjct: 27  AQQKSAVALDTEFIRIRSYYPKLGLIQLYDGERVSLIDP--TTITDFSPFTALLADINVI 84

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+ V  + F     P+  T++ +     + +  GL   ++  L + I K   
Sbjct: 85  KVLHACYEDLEVFSHYFQQLPEPIMDTQVMAGFL-AFPHSTGLASLIRHYLALEIDKGAS 143

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            +DW A  LS++QLQYAA+DV +L  L  +   +L +          C  L+++  
Sbjct: 144 RTDWLARPLSEKQLQYAAADVWYLLPLYEKMAVELAKTRWQSAVEFDCGLLLEKQR 199


>gi|113970513|ref|YP_734306.1| ribonuclease D [Shewanella sp. MR-4]
 gi|113885197|gb|ABI39249.1| ribonuclease D [Shewanella sp. MR-4]
          Length = 384

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 3/172 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    + +DTE +       +L ++Q   G     I  +A    +      +L +    K
Sbjct: 36  QQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLSAFWSLLDNPNIIK 93

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  
Sbjct: 94  LVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLC-GMGHGLGYAKLVETCLGEVIDKGESR 152

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +DW    L++ QL YAA+DV++L+ L  Q  +KL+   R          + +
Sbjct: 153 TDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEEGERMTE 204


>gi|114047748|ref|YP_738298.1| ribonuclease D [Shewanella sp. MR-7]
 gi|113889190|gb|ABI43241.1| ribonuclease D [Shewanella sp. MR-7]
          Length = 384

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 3/172 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    + +DTE +       +L ++Q   G     I  +A    +      +L +    K
Sbjct: 36  QQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLSAFWSLLDNPNIIK 93

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  
Sbjct: 94  LVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLC-GMGHGLGYAKLVETCLGEVIDKGESR 152

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +DW    L++ QL YAA+DV++L+ L  Q  +KL+   R          + +
Sbjct: 153 TDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEEGERMTE 204


>gi|301156355|emb|CBW15826.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
          Length = 383

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 5/194 (2%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+  +  ++   C  AR   A+A+DTE + +     +L ++QL  G+    I  ++    
Sbjct: 12  TLIQNNEELAQVCQLARQQSAVALDTEFMRVSTYYPKLGLIQLYDGERVSLIDPLS--IT 69

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +    V +L D+   KI H    D+ V    F    +P+  T+I +R    + N  GL  
Sbjct: 70  DFSPFVELLRDQLVTKILHACNEDLLVFLQEFDALPQPMMDTQIMARFL-GFANSAGLAK 128

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            +   LGI + K    ++W    LS  QLQYAA DV +L  +  +   +L +        
Sbjct: 129 LVLHYLGIEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIELAQSPWLQAVI 188

Query: 182 SCCNFLMDR-AELD 194
             C   + + ++LD
Sbjct: 189 DDCQLAISKTSKLD 202


>gi|239992935|ref|ZP_04713459.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
          Length = 385

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 3/177 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AA+  +A+A+DTE +        L ++QL  G   V I  +A    N    + ++ + + 
Sbjct: 18  AAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLA--IDNMQPFIDLMENTEV 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    DI      F     PVF T++A  +        G    ++ L  I++ K +
Sbjct: 76  VKVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDM-GPSLGYAKLVELLCDISLDKGE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
             +DW A  L + QL YAA+DV++L     Q   K+Q  G+          L+D+  
Sbjct: 135 SRTDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEAGKVHWIYQEIALLVDKKR 191


>gi|294141241|ref|YP_003557219.1| ribonuclease D [Shewanella violacea DSS12]
 gi|293327710|dbj|BAJ02441.1| ribonuclease D [Shewanella violacea DSS12]
          Length = 369

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R  D + +DTE +        L ++Q   G     I  +A    N      +L +     
Sbjct: 21  RQSDLLVLDTEFVRTRTYYANLGLIQAYDGKTLALIDPVAIN--NLSEFWSLLTEPGITT 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V       +   +F ++IA+ L   + +  G    +++ L I++ K +  
Sbjct: 79  VLHSCSEDLEVFARNGACQPYNLFDSQIAAALC-GFGHGLGYAKLVEQTLDISLDKGESR 137

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +DW    LS+ QL YAA+DV +L+ L  Q  EKLQ  GR       
Sbjct: 138 TDWMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQEQGRLAWLFEE 183


>gi|109899113|ref|YP_662368.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
 gi|109701394|gb|ABG41314.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
          Length = 400

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 5/189 (2%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  + A CA      AIAVDTE +       +L ++Q+  G     I  +     +  
Sbjct: 17  TTDETLNAYCAQLAKAQAIAVDTEFVRTRTLYPQLGLIQIYDGQQIALIDPLEIS--DFT 74

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L DE   K+ H    DI        +  RP+F ++ A+ +T       G    ++
Sbjct: 75  ALKAILTDENIVKVLHSCSEDIETFICALDIVPRPIFDSQFAAAIT-GMGPSLGYAKLVE 133

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            +L I + K +  +DW A  LS +Q QYAA DV++L  L     +K    GR     +  
Sbjct: 134 VMLDIQVDKGESRTDWLARPLSPKQCQYAAYDVLYLFQLYPTLCDKTLAQGRQAWVFAEM 193

Query: 185 NFLMDRAEL 193
             L  R +L
Sbjct: 194 ENL-TRKKL 201


>gi|213586553|ref|ZP_03368379.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 165

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 4/162 (2%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 4   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 62  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
             G+ + K++  +DW A  LS+ Q +YAA+DV +L  +  + 
Sbjct: 121 YTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKL 162


>gi|88607542|ref|YP_504762.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
 gi|88598605|gb|ABD44075.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
          Length = 381

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 6/186 (3%)

Query: 9   GDIPAECAA---RYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            D+   C        +++A+DTE L        +LC++Q++  +    I  +A G    P
Sbjct: 7   NDLSRFCTELLRDNPESVAIDTEFLRSFNDYYPKLCLLQIAYENKQCVIDALAEGIDLTP 66

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  + +  K+FH  R D+  L   F    RP+F T+IA+ L   + N  G    ++
Sbjct: 67  -LQEIFDNTQIFKVFHDCRQDLDALSLLFESLPRPIFDTQIAAMLCEYHENSVGYSKLVE 125

Query: 125 ELLGINISKA-QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + LG+ ++K   +  DWS   L++ +++YA  DV++L+ L     + L   GR       
Sbjct: 126 QFLGVKLNKMPFKRVDWSKRPLTESEVRYALDDVIYLYKLYGILRDILTSKGRLSWYMEE 185

Query: 184 CNFLMD 189
            + ++D
Sbjct: 186 MDCIVD 191


>gi|254786713|ref|YP_003074142.1| ribonuclease D [Teredinibacter turnerae T7901]
 gi|237686111|gb|ACR13375.1| ribonuclease D [Teredinibacter turnerae T7901]
          Length = 393

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 4/180 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVDTE +          ++Q++ G+ +  I  +A    +   L  ++ +    K+ H  
Sbjct: 32  LAVDTEFMRSQTYYPITGLIQVNDGNTSYLIDPLAF--DDFTPLAELMENPGVLKVLHSC 89

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ V     G+  + +  T+IAS L   Y    G    +  +LG  + K +  SDW  
Sbjct: 90  SEDLEVFHRFLGIVPKHMLDTQIASALC-GYGFSVGFGKLVHAVLGEELPKEETRSDWLH 148

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
             LS  Q+ YAA DV +L+ L      KL+ LGR       C  ++ R   D    +N D
Sbjct: 149 RPLSSAQIDYAAIDVEYLYKLASILVLKLKNLGRLTWVAEDCEAML-RQFADNQAVDNSD 207


>gi|68248994|ref|YP_248106.1| ribonuclease D [Haemophilus influenzae 86-028NP]
 gi|68057193|gb|AAX87446.1| ribonuclease D [Haemophilus influenzae 86-028NP]
          Length = 380

 Score =  207 bits (527), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            A+   A+A+DTE + +     +L ++QL   +    I  +A    +    V +L + K 
Sbjct: 26  LAQMKSAVALDTEFMRVSTYFPKLGLIQLYDDERVSLIDPLA--ITDFSPFVALLSNPKV 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    D+ V    F    RP+  T+I +R         GL    ++ L I I K  
Sbjct: 84  LKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFL-GLGTSAGLAKLAQQYLNIEIDKGA 142

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             ++W    LSD QLQYAA DV +L  L     ++L +          C   + +
Sbjct: 143 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELALAK 197


>gi|219870644|ref|YP_002475019.1| ribonuclease D [Haemophilus parasuis SH0165]
 gi|219690848|gb|ACL32071.1| ribonuclease D [Haemophilus parasuis SH0165]
          Length = 375

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 3/173 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             IA+DTE +       +L ++QL  G     I  ++    +      +L +E   K+ H
Sbjct: 27  SVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLS--ITDFSPFTALLANENVLKVLH 84

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+ V  + F    +P+  T++ +          G        L + + K    +DW
Sbjct: 85  ACGEDLEVFQHYFKQLPQPMLDTQVMAGFV-GLGISIGFAKLALHYLEVELDKGASRTDW 143

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
            +  LS+ QLQYA +DV +L  +  +  E L +          C  L+ + ++
Sbjct: 144 LSHPLSEIQLQYACADVWYLLPIYHKLAEDLAKTPWQTAVVEECATLLAKRQI 196


>gi|117920828|ref|YP_870020.1| ribonuclease D [Shewanella sp. ANA-3]
 gi|117613160|gb|ABK48614.1| ribonuclease D [Shewanella sp. ANA-3]
          Length = 388

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 3/172 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    + +DTE +       +L ++Q   G     I  +A    +      +L +    K
Sbjct: 40  QQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA--LPDLSAFWSLLDNPNIIK 97

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V  +    +  P+F ++IA+ L     +  G    ++  LG  I K +  
Sbjct: 98  LVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLC-GMGHGLGYAKLVETCLGEVIDKGESR 156

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +DW    L++ QL YAA+DV++L+ L  Q  +KL+   R          + +
Sbjct: 157 TDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEEGERMTE 208


>gi|254492081|ref|ZP_05105256.1| ribonuclease D [Methylophaga thiooxidans DMS010]
 gi|224462633|gb|EEF78907.1| ribonuclease D [Methylophaga thiooxydans DMS010]
          Length = 379

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 5/184 (2%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           D+  + A      +A+DTE         +LC++Q++  D    +  +     +   L+ +
Sbjct: 14  DLCEQLA--ESTWLAIDTEFHREKTYYPQLCLIQVANDDVIACVDPLK--IDDLSPLMDV 69

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
                   +FH  R D+ +LF       + VF T++A+ +   Y +Q G  + +K+ L +
Sbjct: 70  FYRTDMTLVFHAARQDLELLFLLRDALPQQVFDTQLAATVL-GYGDQIGYGNLVKQCLNV 128

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           ++ KA   +DW    LS EQ+ YAA DV +L  L  Q   KL   GR +        L  
Sbjct: 129 DLDKAHARTDWRQRPLSPEQIDYAADDVRYLRELYHQLEAKLVDTGRINWLKEDFATLSA 188

Query: 190 RAEL 193
               
Sbjct: 189 TETY 192


>gi|170726464|ref|YP_001760490.1| ribonuclease D [Shewanella woodyi ATCC 51908]
 gi|169811811|gb|ACA86395.1| ribonuclease D [Shewanella woodyi ATCC 51908]
          Length = 369

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 3/172 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    + +DTE +       RL ++Q   G     I  +A    +      +L +     
Sbjct: 21  RESQLLVLDTEFVRTRTFYARLGLIQAYDGKTLALIDPVAVS--DLSGFWSLLTEPSITT 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+ V       +   +F ++IA+ L   + +  G    +++ L I + K +  
Sbjct: 79  ILHSCSEDLEVFARNGQCQPVKLFDSQIAAALC-GFGHGLGYAKLVEQTLNIPLDKGESR 137

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +DW    LS+ QL YAA+DV +L+ L  Q  EKL+   R          +  
Sbjct: 138 TDWMKRPLSEAQLNYAANDVYYLYQLYPQLVEKLEEQNRLGWVFEEGERMTQ 189


>gi|157375657|ref|YP_001474257.1| ribonuclease D [Shewanella sediminis HAW-EB3]
 gi|157318031|gb|ABV37129.1| ribonuclease D [Shewanella sediminis HAW-EB3]
          Length = 369

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 3/172 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    + +DTE +       RL ++Q   G     I  IA G  N      +L + +   
Sbjct: 21  RQSTLLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPIAVG--NLSEFWSLLTEPEITT 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V       +   +F ++IA+ L   + +  G    +++ L I + K +  
Sbjct: 79  VLHSCSEDLEVFARNGQCQPIRLFDSQIAASLC-GFGHGLGYAKLVEQTLNIALDKGESR 137

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +DW    LS  QL YAA+DV +L+ L  Q  +KL+   R D        +  
Sbjct: 138 TDWMKRPLSKAQLTYAANDVYYLYELYPQLIQKLEDTDRLDWVFEEGERMTQ 189


>gi|114562909|ref|YP_750422.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
 gi|114334202|gb|ABI71584.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
          Length = 370

 Score =  206 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 6/186 (3%)

Query: 1   MTTIRVHEGD---IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
           M T      D   +      +    + +DTE +       +L ++Q   G     I  +A
Sbjct: 1   MLTFEYISDDASLLSLVEQYQQSTLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA 60

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
               +      +L D+   K+ H    D+ V  +    +  P+F ++IA+       +  
Sbjct: 61  --ITDLSPFWQLLTDQNIVKLVHSCSEDLEVFAHYGECQPSPLFDSQIAASFA-GLGHGL 117

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           G    +   L + I K +  +DW    LSD QLQYAA+DV +L+ L  Q  +KL    R 
Sbjct: 118 GYAKLVDACLQVEIDKGESRTDWMNRPLSDAQLQYAANDVFYLYQLYPQLQQKLAADNRV 177

Query: 178 DLATSC 183
           +     
Sbjct: 178 EWLFEE 183


>gi|284006971|emb|CBA72245.1| ribonuclease D [Arsenophonus nasoniae]
          Length = 386

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 4/190 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   +  +   C AA     IA+DTE + +     +L ++QL  G+    I  IA    N
Sbjct: 17  LITTDAQLKEVCQAASKASKIALDTEFVRVKTYYPQLSLIQLYDGEQLSLIDPIA--ITN 74

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L D K  KI H G  DI V F+      +P+  T+I +     +    G    
Sbjct: 75  MEPFKNLLTDGKVTKILHAGSEDIEVFFHHLACVPQPMLDTQIMAAFV-GHPISSGFASL 133

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + + L I + K++  +DW    LSD+Q QYAA+DV  L  L  +  + + +LG     T 
Sbjct: 134 VNKYLTIALDKSESRTDWLVRPLSDKQCQYAAADVFFLLPLAEKLQQLVDKLGYLPAVTD 193

Query: 183 CCNFLMDRAE 192
            C  ++ R +
Sbjct: 194 ECQRILLRRQ 203


>gi|167623763|ref|YP_001674057.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
 gi|167353785|gb|ABZ76398.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
          Length = 369

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 3/166 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +  D + +DTE +       RL ++Q   G     I  +A           +L  E   K
Sbjct: 21  QEADLLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPLAVSNLEL--FWQLLNKESSVK 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V       +   +F ++IA+ L     +  G    +++ L +++ K +  
Sbjct: 79  LLHSCSEDLEVFARYGQCQPTNLFDSQIAAGLA-GMGHGLGYAKLVEQTLEVSLDKGESR 137

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +DW    L++ QL YAA+DV +L+ L  Q  +KL+  GR D     
Sbjct: 138 TDWLKRPLTEAQLNYAANDVYYLYKLYPQLVDKLKEQGRLDWVYEE 183


>gi|332141837|ref|YP_004427575.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551859|gb|AEA98577.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
          Length = 385

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 3/177 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AA+  +A+A+DTE +        L ++QL  G   V I  +A    N    V +L + + 
Sbjct: 18  AAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLA--IDNMQPFVALLENTEV 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    D+      F     PVF T+IA  +        G    ++ L  I++ K +
Sbjct: 76  VKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDM-GPSLGYAKLVELLCEISLDKGE 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
             +DW A  L + QL YAA+DV++L     Q    +Q LG+          L+++  
Sbjct: 135 SRTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGKVHWIYEEVALLVEKKR 191


>gi|303232226|ref|ZP_07318925.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
 gi|302481636|gb|EFL44697.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
          Length = 437

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 4/187 (2%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
                 ++ A CA       +A+DTE +       +LC++Q++    +  +  +A    +
Sbjct: 63  FITTPDELKAFCAHVAQEGCVAIDTEFIREKTYYPQLCLIQMATHTQSAVVDPLACS--S 120

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             +L  +L D+   K+F     DI VL+   GV  + VF  ++A+     Y  Q G    
Sbjct: 121 LCDLACLLEDKSIIKVFFACSQDIEVLYDALGVVPKNVFDAQLAAAFL-GYRYQLGYGAL 179

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           ++ ++G+++ K Q  +DWS   L++EQL+YAA DV++   +      +L R  R    T 
Sbjct: 180 VEAMVGVHLPKTQALTDWSLRPLTEEQLKYAADDVIYQPQMYTLLVRELTRTNRYAWFTH 239

Query: 183 CCNFLMD 189
                +D
Sbjct: 240 EMKQTLD 246


>gi|119476222|ref|ZP_01616573.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
 gi|119450086|gb|EAW31321.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
          Length = 384

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 3/172 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           ++   +A+DTE +          ++Q+S G G   I  ++    +   L  +L D    K
Sbjct: 30  QHAAVLALDTEFIRTDTFYPIGALLQISEGTGCFLIDPLS--IDDFSPLTALLTDPAIVK 87

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V    F V  +P+  T+IA+ L   Y    G +   + LL I+++K +  
Sbjct: 88  VLHSCSEDLEVFERLFQVLPQPLIDTQIAAGL-DGYGFSLGYQKMTEALLQIHVAKGETR 146

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           S+W    L++ Q+ YAA DV +L  +  Q  + L+  GR       C+ L +
Sbjct: 147 SNWLQRPLTESQIHYAALDVAYLPEMYQQLKQSLESKGRWQWLLDECSPLTN 198


>gi|190575218|ref|YP_001973063.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a]
 gi|190013140|emb|CAQ46772.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a]
          Length = 359

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 4/199 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M T      ++ A    R    I +DTE +       +L +VQ++ G   + I  +  G 
Sbjct: 1   MATWITTPAELDAYFQQRPT-RIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGM 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L DE   K+ H    D+    +  GV  RP+F T+I + L        G +
Sbjct: 60  TEA--LAHWLADESITKVMHSASEDLVAFRWACGVLPRPLFDTQIGASLAGIGG-GMGYQ 116

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + E+ G+ ++K +  SDW    LS+ QLQYAA DV HL AL      +LQ LGR    
Sbjct: 117 KLVAEITGVALAKGETRSDWMRRPLSESQLQYAADDVEHLFALHDAIDARLQALGRQQWL 176

Query: 181 TSCCNFLMDRAELDLLGWE 199
                 L+     D   W 
Sbjct: 177 HDDGERLLASVANDEDRWP 195


>gi|238897738|ref|YP_002923417.1| RNase D, processes tRNA precursor [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465495|gb|ACQ67269.1| RNase D, processes tRNA precursor [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 387

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 4/188 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +     D+   C  A    A+A+DTE +        L ++QL  G     I         
Sbjct: 16  LITTNEDLHHICELAVLRKAVALDTEFVRTKTYYAELGLIQLYDGHRVSLIDPFL--ITE 73

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +L ++K  K  H    DI + F+ F     P+  ++I +  T       G    
Sbjct: 74  WAPFYCLLKNKKIVKFLHSAGEDIEIFFHFFKTLPEPLIDSQILAAFT-GRPVSCGFSIL 132

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +KE  GI ++KA+  +DW A  LS +Q  YAA DV +L  L     +K++  G  +    
Sbjct: 133 VKEFQGIVLNKAESRTDWLARPLSQKQCDYAAEDVFYLLPLANALMKKIETSGWMEAVKE 192

Query: 183 CCNFLMDR 190
            C  L  R
Sbjct: 193 ECELLCQR 200


>gi|254522754|ref|ZP_05134809.1| ribonuclease D [Stenotrophomonas sp. SKA14]
 gi|219720345|gb|EED38870.1| ribonuclease D [Stenotrophomonas sp. SKA14]
          Length = 359

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 4/199 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M T      ++ A    R    I +DTE +       +L +VQ++ G   + I  +  G 
Sbjct: 1   MATWITTPAELDAYFQQRP-SRIGLDTEFIRERTFWPQLALVQMAVGRDILLIDPLIPGM 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L DE   K+ H    D+    +  GV  RP+F T+I + L        G +
Sbjct: 60  TEA--LAPWLADESIIKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLAGIGG-GMGYQ 116

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + E+ G+ ++K +  SDW    LS+ QLQYAA DV HL AL      +LQ LGR    
Sbjct: 117 KLVAEITGVALAKGETRSDWMRRPLSESQLQYAADDVEHLFALHDAIGARLQALGRQQWL 176

Query: 181 TSCCNFLMDRAELDLLGWE 199
                 L+     D   W 
Sbjct: 177 HDDGERLLASVANDEDRWP 195


>gi|325578461|ref|ZP_08148596.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
 gi|325160197|gb|EGC72326.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
          Length = 383

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 5/194 (2%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+  +  ++   C  AR   A+A+DTE + +     +L ++QL  G+    I  ++    
Sbjct: 12  TLIQNNEELAQVCQLARQQSAVALDTEFMRISTYYPKLGLIQLYDGERVSLIDPLS--IT 69

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +    V +L D++  KI H    D+ V    F    + +  T+I +R    + N  GL  
Sbjct: 70  DFSPFVELLRDQQVTKILHACNEDLLVFLQEFDALPQLMMDTQIMARFL-GFANSAGLAK 128

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            +   LGI + K    ++W    LS  QLQYAA DV +L  +  +   +L +        
Sbjct: 129 LVLHYLGIEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIELAQSPWLQAVI 188

Query: 182 SCCNFLMDR-AELD 194
             C   + + ++LD
Sbjct: 189 DDCQLAISKTSKLD 202


>gi|302037758|ref|YP_003798080.1| ribonuclease D [Candidatus Nitrospira defluvii]
 gi|300605822|emb|CBK42155.1| Ribonuclease D [Candidatus Nitrospira defluvii]
          Length = 401

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 5/188 (2%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T    +  + A C    +   IA+DTE +G      RL ++Q++  +G   +I   A Q+
Sbjct: 9   TFITSDDALDALCDQLIHSSVIAIDTEFMGEEHFIPRLELIQVAA-EGVAAVIDFPAVQE 67

Query: 62  NAP--NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
            AP      ++ D + EK+ H GR D+ +  +  G   +P F T+IA+ +   Y  Q   
Sbjct: 68  AAPMARFWEIVCDARIEKVLHAGRQDLELFAHHAGRLPKPFFDTQIAAAMV-GYGAQTAY 126

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            + ++ + G+ + KA   ++WS   LS EQL YA  DV  L  +     +KL  +GRS+ 
Sbjct: 127 ANLVQRVQGVKLDKAHTFTNWSQRPLSREQLVYALDDVTFLLPVHRHLRQKLSVMGRSEW 186

Query: 180 ATSCCNFL 187
                  L
Sbjct: 187 VDEEFARL 194


>gi|206576967|ref|YP_002237811.1| ribonuclease D [Klebsiella pneumoniae 342]
 gi|290508867|ref|ZP_06548238.1| ribonuclease D [Klebsiella sp. 1_1_55]
 gi|206566025|gb|ACI07801.1| ribonuclease D [Klebsiella pneumoniae 342]
 gi|289778261|gb|EFD86258.1| ribonuclease D [Klebsiella sp. 1_1_55]
          Length = 375

 Score =  204 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 3/168 (1%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           +DTE +       +L ++QL  G     I  +     +   +  +L+++   K  H G  
Sbjct: 27  LDTEFVRTRTYYPQLGLLQLFDGTQVSLIDPLTIS--DWAPMRELLLNQDVTKYLHAGSE 84

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           D+ V    F +  +P+  T+I +          G    ++E  G+ + K++  +DW A  
Sbjct: 85  DLEVFLNAFSLMPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVALDKSESRTDWLARP 143

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           L++ Q +YAA+DV +L  +  Q   +  R G    A   C  +  R +
Sbjct: 144 LTERQCEYAAADVWYLLPIASQLMAETDRAGWLSAALDECRLMQQRRQ 191


>gi|288934742|ref|YP_003438801.1| ribonuclease D [Klebsiella variicola At-22]
 gi|288889451|gb|ADC57769.1| ribonuclease D [Klebsiella variicola At-22]
          Length = 371

 Score =  204 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 3/168 (1%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           +DTE +       +L ++QL  G     I  +     +   +  +L+++   K  H G  
Sbjct: 23  LDTEFVRTRTYYPQLGLLQLFDGTQVSLIDPLTIS--DWAPMRELLLNQDVTKYLHAGSE 80

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           D+ V    F +  +P+  T+I +          G    ++E  G+ + K++  +DW A  
Sbjct: 81  DLEVFLNAFSLMPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVALDKSESRTDWLARP 139

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           L++ Q +YAA+DV +L  +  Q   +  R G    A   C  +  R +
Sbjct: 140 LTERQCEYAAADVWYLLPIASQLMAETDRAGWLSAALDECRLMQQRRQ 187


>gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2]
 gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2]
          Length = 377

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 6/196 (3%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+  ++ D+ A C   +    +A D E   +   ++++C+VQ++  + +  +  ++    
Sbjct: 5   TLIENDEDLAARCDLLKTEKRLAFDLEADSMHHFKEKVCLVQMADPNDSFVVDPLS--ID 62

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +   L  +  D    K+FH   FDI  L   F + V  +F T+IA R          L  
Sbjct: 63  DLSVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNNLFDTEIACRFLGIQKR--SLAA 120

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            L++   + + K  Q +DWS   LS E + Y+ +DV +L  L     ++L+  GR   A 
Sbjct: 121 LLEKHFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLELSDILKKRLEDEGRLAWAE 180

Query: 182 SCCNFLMDRAELDLLG 197
                L  R   D  G
Sbjct: 181 EEFE-LQTRVRHDNNG 195


>gi|194366535|ref|YP_002029145.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
 gi|194349339|gb|ACF52462.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
          Length = 358

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 4/205 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M T      ++ A    R    I +DTE +       +L +VQ++ G   + I  +  G 
Sbjct: 1   MATWITTPTELDAYFQQRP-SRIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGM 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L DE   K+ H    D+    +  GV  RP+F T+I + L        G +
Sbjct: 60  --AEALAPWLADESIIKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLAGIGG-GMGYQ 116

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + E+ G+ ++K +  SDW    LS+ QLQYAA DV HL A+      KLQ LGR    
Sbjct: 117 KLVAEITGVALAKGETRSDWMRRPLSESQLQYAADDVEHLFAMHDAIDAKLQALGRQQWL 176

Query: 181 TSCCNFLMDRAELDLLGWENVDIFS 205
                 L+     D   W ++ + S
Sbjct: 177 HDDGERLLASVANDEDRWPHLSMRS 201


>gi|114775667|ref|ZP_01451235.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
 gi|114553778|gb|EAU56159.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
          Length = 398

 Score =  202 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 6/204 (2%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I   +    A         + VDTE            ++Q+  G+G   +I     +  A
Sbjct: 9   INTPDQLRQAAATMAECQVLCVDTEFHRESTFYPEFALLQIY-GNGQCWVIDPITIKDLA 67

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P    ++++    K+FH  R DI ++F   G    P+F T++A+ L   Y  Q G  + +
Sbjct: 68  PV-WDIMLNPAILKVFHAARQDIEIIFNEAGGLPLPLFDTQVAAALL-GYGQQVGFGNLV 125

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + +    + K +  +DW A  L+ +Q+ YAA DV+ L  +     E+L+   R+      
Sbjct: 126 QRITKKLLPKGESFTDWKARPLTKKQMAYAADDVIWLMPVFQHLKERLEAAKRTQWLQEE 185

Query: 184 CNFLMDRAEL---DLLGWENVDIF 204
              L         D   +  V  F
Sbjct: 186 QQTLCSPETYQPNDADAFWRVKGF 209


>gi|88658362|ref|YP_507121.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas]
 gi|88599819|gb|ABD45288.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas]
          Length = 387

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 11  IPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +  +        IAVDTE +        +LC++Q++ G     +I + A   +   L  +
Sbjct: 12  LCNQLLVLQPKFIAVDTEFVRSSSEYYPKLCLIQIAYGKEQF-VIDVLAKDMDLSVLGHI 70

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             +E   K+FH  R DI  L   F     P+F T+IA+     Y N  G    +++ LGI
Sbjct: 71  FYNESIIKVFHDCRQDIDALLTKFPEIPSPIFDTQIAAMFCCCYDNAVGYSKLVEQFLGI 130

Query: 130 NISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           ++ K + + S+W+   LS +++QYA +DV++L+ L       L   G+        N
Sbjct: 131 SLDKLSLKRSNWALRPLSADKIQYALNDVIYLYELYQILYNNLLDAGKLPWFLEEMN 187


>gi|73667317|ref|YP_303333.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394458|gb|AAZ68735.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 386

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 3/169 (1%)

Query: 19  YVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               IA+DTE +        RLC++Q++ G     +I + A   +   L  +L ++   K
Sbjct: 20  QPKFIAIDTEFIRNSSEYYPRLCLMQVAYGREQF-VIDVLASDMDLSPLNSILYNKNIVK 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-AQQ 136
           +FH  R DI  L   F     P+F T++A+     Y N  G    +++ LGI++ K + +
Sbjct: 79  VFHDCRQDIDALLTKFPKIPNPIFDTQVAAMFCYCYENAVGYSRLVEQFLGISLDKLSLK 138

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
            S+W    LS +++QYA +DV++LH L     + L   G+        +
Sbjct: 139 RSNWMLRPLSPDKIQYALNDVIYLHELYQILYDNLVDSGKLLWFLEEMD 187


>gi|68171541|ref|ZP_00544920.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999046|gb|EAM85718.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
          Length = 387

 Score =  201 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 3/177 (1%)

Query: 11  IPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +  +        IAVDTE +        +LC++Q++ G     +I + A   +   L  +
Sbjct: 12  LCNQLLVLQPKFIAVDTEFVRSSSEYYPKLCLIQIAYGKEQF-VIDVLAKDMDLSVLGHI 70

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             +E   K+FH  R DI  L   F     P+F T+IA+     Y N  G    +++ LGI
Sbjct: 71  FYNESIIKVFHDCRQDIDALLTKFPEIPSPIFDTQIAAMFCCCYDNAVGYSKLVEQFLGI 130

Query: 130 NISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           ++ K + + S+W+   LS +++QYA +DV++L+ L       L   G+        N
Sbjct: 131 SLDKLSLKRSNWALRPLSADKIQYALNDVIYLYELYQILYNNLLDAGKLPWFLEEMN 187


>gi|326795603|ref|YP_004313423.1| ribonuclease D [Marinomonas mediterranea MMB-1]
 gi|326546367|gb|ADZ91587.1| ribonuclease D [Marinomonas mediterranea MMB-1]
          Length = 383

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 3/168 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           ++ IAVDTE L          ++Q+S G+  V I            L  ++V+    K+F
Sbjct: 29  LNVIAVDTEFLRRTTYYPITGLIQISEGEKAVLIDP--QTITEWAPLKDLMVNLDVMKVF 86

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+ V     GV   P + T+I                 ++  L I ++K +  SD
Sbjct: 87  HACSEDLDVFDRLLGVLPTPFYDTQIGEAYANGQW-SVSYVKLIQAYLSIEVAKDETRSD 145

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           W+   L++ Q +YAA DVV+L  +  Q  E LQ+    D A   C+ L
Sbjct: 146 WTVRPLTEAQKRYAALDVVYLAKVYPQQIEMLQKKNMLDWALEDCDTL 193


>gi|78048167|ref|YP_364342.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78036597|emb|CAJ24288.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 363

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 3/194 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M    +H  ++     A     I +DTE +       +L +VQ++ GD  + I  +  G 
Sbjct: 1   MPHWIIHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGDEILLIDPLIPGM 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L      K+ H    D+       G   RP+F T+IA+ L          +
Sbjct: 61  NAA--LKEWLTAPDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMG-YQ 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+    T +L   GR +  
Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEWL 177

Query: 181 TSCCNFLMDRAELD 194
                 L+   E D
Sbjct: 178 AEDAERLLATVEHD 191


>gi|28199772|ref|NP_780086.1| ribonuclease D [Xylella fastidiosa Temecula1]
 gi|182682522|ref|YP_001830682.1| ribonuclease D [Xylella fastidiosa M23]
 gi|28057893|gb|AAO29735.1| ribonuclease D [Xylella fastidiosa Temecula1]
 gi|182632632|gb|ACB93408.1| ribonuclease D [Xylella fastidiosa M23]
          Length = 362

 Score =  200 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 4/201 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +   D  A    R    I +DTE +        L +VQ++ GD  + +  +  G  +A  
Sbjct: 5   IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIGDEILLVDPLVPGMTDALG 64

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      KI H    D+    Y  GV  RP+F T+I            G +  + +
Sbjct: 65  LW--LAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAK 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  + + K +  SDW    L+  QL YAA+DV +L AL    TE+L  + RS      C 
Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181

Query: 186 FLMDRAE-LDLLGWENVDIFS 205
            L D  E  +   W ++ I S
Sbjct: 182 RLTDNIEQNENERWPHLAIRS 202


>gi|294626013|ref|ZP_06704623.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599683|gb|EFF43810.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 363

 Score =  199 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 3/194 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M     H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G 
Sbjct: 1   MPHWITHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L+     K+ H    D+       G   RP+F T+IA+ L          +
Sbjct: 61  NAA--LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMG-YQ 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L   GR +  
Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLTEQGRLEWL 177

Query: 181 TSCCNFLMDRAELD 194
               + L+   E D
Sbjct: 178 AEDADRLLATVEHD 191


>gi|325928069|ref|ZP_08189282.1| ribonuclease D [Xanthomonas perforans 91-118]
 gi|325541567|gb|EGD13096.1| ribonuclease D [Xanthomonas perforans 91-118]
          Length = 363

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 3/194 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M    +H  ++     A     I +DTE +       +L +VQ++ GD  + I  +  G 
Sbjct: 1   MPHWIIHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGDEILLIDPLIPGM 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L      K+ H    D+       G   RP+F T+IA+ L          +
Sbjct: 61  NAA--LKEWLTATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMG-YQ 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+    T +L   GR +  
Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEWL 177

Query: 181 TSCCNFLMDRAELD 194
                 L+   E D
Sbjct: 178 AEDAERLLATVEHD 191


>gi|21243147|ref|NP_642729.1| ribonuclease D [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108668|gb|AAM37265.1| ribonuclease D [Xanthomonas axonopodis pv. citri str. 306]
          Length = 363

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 3/194 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M     H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G 
Sbjct: 1   MPLWITHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L+     K+ H    D+       G   RP+F T+IA+ L          +
Sbjct: 61  NAA--LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMG-YQ 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L   GR +  
Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLAEQGRLEWL 177

Query: 181 TSCCNFLMDRAELD 194
               + L+   E D
Sbjct: 178 AEDADRLLATVEHD 191


>gi|71278230|ref|YP_270192.1| ribonuclease D [Colwellia psychrerythraea 34H]
 gi|71143970|gb|AAZ24443.1| ribonuclease D [Colwellia psychrerythraea 34H]
          Length = 379

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 3/172 (1%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
               +A+DTE +       +L ++Q+  G+    I  +A    +      +L +E   K+
Sbjct: 21  KAKVLAIDTEFVRTRTLYAKLGLLQVCDGEQLALIDPLA--IDDLAPFWALLTNENITKV 78

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+ V       +   +  ++I       +    G    +K    I + K++  +
Sbjct: 79  LHACSEDLEVFLTAGNCKPVNLIDSQIMMSFL-GHGLSLGYAAMVKHFTDIELDKSESRT 137

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           DW+   L+++QL YA++DV HL  +  +   ++ + G    A      ++D+
Sbjct: 138 DWTKRPLTEKQLDYASADVDHLFDIYPKLLAEITQAGFLAYAQIETQSMIDK 189


>gi|15837353|ref|NP_298041.1| ribonuclease D [Xylella fastidiosa 9a5c]
 gi|9105641|gb|AAF83561.1|AE003916_15 ribonuclease D [Xylella fastidiosa 9a5c]
          Length = 362

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 6/203 (2%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +   D  A    R    I +DTE +        L +VQ++  D  + +  +  G  +A  
Sbjct: 5   IQHPDTLATWWDRKPTRIGMDTEFIRERTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      KI H    D+    Y  GV  RP+F T+I            G +  +  
Sbjct: 65  LW--LAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAT 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  + + K +  SDW    L+  QL YAA+DV +L AL    TE+L  + RS      C 
Sbjct: 122 VTNVALEKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181

Query: 186 FLMDRAE-LDLLGWENVDIFSHS 207
            L D  E  +   W ++ I  HS
Sbjct: 182 RLTDNIEQNENERWPHLAI--HS 202


>gi|78485923|ref|YP_391848.1| 3'-5' exonuclease [Thiomicrospira crunogena XCL-2]
 gi|78364209|gb|ABB42174.1| ribonuclease D [Thiomicrospira crunogena XCL-2]
          Length = 385

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 4/187 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   + D+ A C   +    IA+DTE +        L ++Q+   DG   II   A + +
Sbjct: 5   IINQQADLDAFCELLKTCPWIALDTEFVRTDTYFSILSLIQIQTHDGQAAIIDPLAIE-D 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  ++ +    K+FH  R DI VL+   G     ++ T+IA    + + +  GL   
Sbjct: 64  LTALWSIISNPNVRKVFHSARQDIEVLYQVSGQMPISIYDTQIACLFLQ-HGDLAGLARV 122

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +K  L   + K Q  ++W    L+D+QL+YA +DV +L  L  +   +L    ++ L   
Sbjct: 123 VKAELNFTLEKDQTRTNWQQRPLTDKQLEYAINDVRYLAPLYEKLQAELTEQQQAAL-EE 181

Query: 183 CCNFLMD 189
               L++
Sbjct: 182 DFQALLN 188


>gi|332290211|ref|YP_004421063.1| ribonuclease D [Gallibacterium anatis UMN179]
 gi|330433107|gb|AEC18166.1| ribonuclease D [Gallibacterium anatis UMN179]
          Length = 377

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 14/207 (6%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   +  +   C  AR+   +A+DTE   +     +L ++QL  G     I  +     +
Sbjct: 6   IIQQDAQLKQLCEQARHYSVVALDTEFERVRSYYAKLGLIQLYFGADVALIDPLT--ITD 63

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
               + +L D    KI H    DI +    F     P+  T+I +     +    G    
Sbjct: 64  WQPFIALLADANVLKILHASGEDIEIFHQQFQQIPTPMLDTQIMANFL-GFPQSAGFALL 122

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +  L + + K    +DW    LS+ QL YAA+DV +L  +  +    +           
Sbjct: 123 AQHYLQVELDKKASRTDWLKRPLSERQLNYAAADVYYLLPIYQKMAATMASSEWKTAIQQ 182

Query: 183 CCNFL---------MDRAELDL-LGWE 199
            C             ++A LD+   W 
Sbjct: 183 ECKLFAQKRCRQISPEKAYLDIGNAWR 209


>gi|294666468|ref|ZP_06731711.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292603774|gb|EFF47182.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 363

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 3/194 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M     H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G 
Sbjct: 1   MPHWITHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L+     K+ H    D+       G   RP+F T+IA+ L          +
Sbjct: 61  NAA--LKEWLIATDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMG-YQ 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L   GR +  
Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLTEQGRLEWQ 177

Query: 181 TSCCNFLMDRAELD 194
                 L+   E D
Sbjct: 178 AEDAERLLATVEHD 191


>gi|15895183|ref|NP_348532.1| ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|15024889|gb|AAK79872.1|AE007698_6 Ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|325509325|gb|ADZ20961.1| Ribonuclease D [Clostridium acetobutylicum EA 2018]
          Length = 205

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 107/208 (51%), Gaps = 7/208 (3%)

Query: 1   MTTIRVHEGDIPAEC---AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
           M  I++ + D+              IA+DTET GL P +D+LC++Q+   +    I  I 
Sbjct: 1   MYNIKLCKLDLDNNDKRYILNNCKYIAIDTETTGLDPLKDKLCLIQICAKEK---IFLIK 57

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQ 116
               N  NL+G+L   K  KIFH+  FD+  L     +  +  V CTKIA++L      +
Sbjct: 58  YNNSNQKNLIGILQCSKIIKIFHHANFDLRFLMKNLKIYNINNVVCTKIAAKLLNGIEIE 117

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           + LK  L++ L INI K  Q S+WSA++L+ EQ+QYA  DV++L  L      +L +   
Sbjct: 118 NSLKKLLRKYLNINIDKKLQKSNWSAENLTKEQIQYATYDVIYLEKLWRALKAELIKANL 177

Query: 177 SDLATSCCNFLMDRAELDLLGWENVDIF 204
             LA  C  +L   A L   G EN+ I+
Sbjct: 178 YSLAEECFKYLPTNAILHNRGIENIFIY 205


>gi|94500848|ref|ZP_01307374.1| ribonuclease D [Oceanobacter sp. RED65]
 gi|94426967|gb|EAT11949.1| ribonuclease D [Oceanobacter sp. RED65]
          Length = 382

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 11/198 (5%)

Query: 1   MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIA 57
           M  I  H  D+ + C      + IA+D+E + +     +L ++Q++ G  T  VD +RI 
Sbjct: 1   MKYIDTH-IDLASACEHWNTCNRIALDSEFMRVDTFYPKLALIQINDGSETYLVDPVRIN 59

Query: 58  AGQKNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111
              +  P       L+ +L ++   K+ H    D    +   GV   P+  T+ A+ +  
Sbjct: 60  RAHRGEPREEVWGPLIEVLSNQNVVKVLHSPSEDFDAFYSNLGVVPSPIIDTQWAAAMAS 119

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                 G +  +K+LL I++ K    SDW    L+DEQ+ YAA DV HL  +  +   +L
Sbjct: 120 IDGI-MGYQKLVKQLLDIDLEKGATRSDWLQRPLTDEQIHYAADDVEHLLEITKRLETQL 178

Query: 172 QRLGRSDLATSCCNFLMD 189
              GR       C  +++
Sbjct: 179 VTQGRWTWLLEDCERMVE 196


>gi|71901132|ref|ZP_00683238.1| Ribonuclease D [Xylella fastidiosa Ann-1]
 gi|71729096|gb|EAO31221.1| Ribonuclease D [Xylella fastidiosa Ann-1]
          Length = 362

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 4/201 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +   D  A    R    I +DTE +        L +VQ++  D  + +  +  G  +A  
Sbjct: 5   IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      KI H    D+    Y  GV  RP+F T+I            G +  + +
Sbjct: 65  LW--LAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVTK 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  + + K +  SDW    L+  QL YAA+DV +L AL    TE+L  + RS      C 
Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCT 181

Query: 186 FLMDRAE-LDLLGWENVDIFS 205
            L D  E  +   W ++ I S
Sbjct: 182 RLTDNIEQNENERWPHLAIRS 202


>gi|329898076|ref|ZP_08272286.1| Ribonuclease D [gamma proteobacterium IMCC3088]
 gi|328920975|gb|EGG28399.1| Ribonuclease D [gamma proteobacterium IMCC3088]
          Length = 373

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 4/176 (2%)

Query: 9   GDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            D+    A+   + A+ +DTE +       +  +VQL+       +  +A    +A  L 
Sbjct: 13  DDLERTVASYQSNQAVVLDTEFVRERTYYPKPALVQLAGAGHISLVDPVAV--TDASALS 70

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L  E+  K+ H G  D+ V     G  ++  F T++A+ L   Y    G ++ ++  L
Sbjct: 71  SLLESERTLKVVHSGSEDLEVFQAWLGCPIKGWFDTQVAAALL-GYGYAIGYRNIVETFL 129

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           G  + K +  SDW    LSD QLQYA +DV++L  +  +  ++ + LGR +     
Sbjct: 130 GEELDKGETRSDWLQRPLSDSQLQYAIADVLYLEPVFERLYQEAEALGRVEWVLEE 185


>gi|289665658|ref|ZP_06487239.1| ribonuclease D [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 210

 Score =  197 bits (503), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 3/194 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M     H  ++     A     I +DTE +       +L +VQL+ G+  + I  +  G 
Sbjct: 1   MPHWITHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQLAIGEEILLIDPLIPGM 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L      K+ H    D+       GV  RP+F T+IA+ L          +
Sbjct: 61  NEA--LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L    R    
Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQDRLGWL 177

Query: 181 TSCCNFLMDRAELD 194
                 L+   E D
Sbjct: 178 AEDAERLLATVEHD 191


>gi|71275157|ref|ZP_00651444.1| Ribonuclease D [Xylella fastidiosa Dixon]
 gi|71163966|gb|EAO13681.1| Ribonuclease D [Xylella fastidiosa Dixon]
          Length = 362

 Score =  197 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 4/201 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +   D  A    R    I +DTE +        L +VQ++  D  + +  +  G  +A  
Sbjct: 5   IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      KI H    D+    Y  GV  RP+F T+I            G +  + +
Sbjct: 65  LW--LAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAK 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  + + K +  SDW    L+  QL YAA+DV +L  L    TE+L  + RS      C 
Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCT 181

Query: 186 FLMDRAE-LDLLGWENVDIFS 205
            L D  E  +   W ++ I S
Sbjct: 182 RLTDNIEQNENERWPHLAIRS 202


>gi|170731148|ref|YP_001776581.1| ribonuclease D [Xylella fastidiosa M12]
 gi|167965941|gb|ACA12951.1| ribonuclease D [Xylella fastidiosa M12]
          Length = 362

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 4/201 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +   D  A    R    I +DTE +        L +VQ++  D  + +  +  G  +A  
Sbjct: 5   IQHPDTLATWWDRKPTRIGMDTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALG 64

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      KI H    D+    Y  GV  RP+F T+I            G +  + +
Sbjct: 65  LW--LAAPNVIKIMHSASEDLIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAK 121

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +  + + K +  SDW    L+  QL YAA+DV +L  L    TE+L  + RS      C 
Sbjct: 122 VTNVELGKGETRSDWMHRPLTPAQLDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCT 181

Query: 186 FLMDRAE-LDLLGWENVDIFS 205
            L D  E  +   W ++ I S
Sbjct: 182 RLTDNIEQNENERWPHLAIRS 202


>gi|58582365|ref|YP_201381.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426959|gb|AAW75996.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 416

 Score =  197 bits (502), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 3/189 (1%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G   A  
Sbjct: 59  THPSELTDRLQAARPARIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGMNAA-- 116

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L   L      K+ H    D+       GV  RP+F T+IA+ L          +  ++E
Sbjct: 117 LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQKLVQE 175

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           + G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L    R         
Sbjct: 176 VTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLGWLAEDAE 235

Query: 186 FLMDRAELD 194
            L+   E D
Sbjct: 236 RLLATVEHD 244


>gi|90020985|ref|YP_526812.1| ribonuclease D [Saccharophagus degradans 2-40]
 gi|89950585|gb|ABD80600.1| ribonuclease D [Saccharophagus degradans 2-40]
          Length = 386

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 5/170 (2%)

Query: 13  AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
            EC  R+     +AVDTE +          ++Q++ G+    +        +      +L
Sbjct: 20  EECCERWQSKKLLAVDTEFMRSQTYYPIAGLIQVNDGEANYLLDP--TTIDDFSPFAEIL 77

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
           VD+   K  H    D+ V +++FG   + +F T+IA           G    ++ +LG+ 
Sbjct: 78  VDDDIIKAIHSCSEDLEVFYHSFGFLPQRLFDTQIAGAFVN-LGYSMGFARMVQGVLGVE 136

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           + K +  SDW    LS  Q  YAA DV +L+ L  +   +L+   R D  
Sbjct: 137 LPKTETRSDWLQRPLSVAQKHYAALDVEYLYLLAGKLLTELKAKERLDWV 186


>gi|269959116|ref|YP_003328905.1| ribonuclease D [Anaplasma centrale str. Israel]
 gi|269848947|gb|ACZ49591.1| ribonuclease D [Anaplasma centrale str. Israel]
          Length = 389

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 6/182 (3%)

Query: 9   GDIPAECAA---RYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            D+   CA       +++AVDTE +        RLC++Q++   G   ++ +   + +  
Sbjct: 11  SDLARFCAQILRDRPESLAVDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLS 69

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  DE   K+FH  R D+  L   F    +P+F T+ AS L   + N  G    ++
Sbjct: 70  PLQEIFDDEGICKVFHDCRQDLDALSQRFLRLPKPIFDTQTASMLCEYHDNSVGYSKLVE 129

Query: 125 ELLGINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + LG+ ++K   +  DWS   LS+ +++YA  DV +LH L     + L   GR       
Sbjct: 130 QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYGVLLDILVAKGRLTWFREE 189

Query: 184 CN 185
             
Sbjct: 190 MA 191


>gi|330504002|ref|YP_004380871.1| ribonuclease D [Pseudomonas mendocina NK-01]
 gi|328918288|gb|AEB59119.1| ribonuclease D [Pseudomonas mendocina NK-01]
          Length = 377

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 8/202 (3%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + +  +   CAA + +  +A+DTE + +        ++Q+S GDG   I  +     +  
Sbjct: 9   LDDAGLAEHCAAWQALPFVALDTEFMRVDTFYPIAGLLQVSGGDGAYLIDPLRIS--DWR 66

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L      K+ H    D+ V     G    P+F T++A+          G    ++
Sbjct: 67  PFAALLEAPNVVKVLHSCSEDLEVFLRLSGSLPAPLFDTQLAAGYLN-LGFSMGYSRLVQ 125

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            LL I + K +  SDW    LS+ Q++YAA DV+HL  +      +L    + +      
Sbjct: 126 ALLDIELPKGETRSDWLQRPLSELQVRYAAEDVLHLVEVYRALMARLAPQ-KVEWVLEDG 184

Query: 185 NFLMDRAELDLL---GWENVDI 203
             L+     ++     W    +
Sbjct: 185 AELVANLSREVAPEDAWREAKL 206


>gi|84624243|ref|YP_451615.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576150|ref|YP_001913079.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84368183|dbj|BAE69341.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520602|gb|ACD58547.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 363

 Score =  196 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 3/194 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M    +H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G 
Sbjct: 1   MPHWIIHPSELTDRLQAARPARIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L      K+ H    D+       GV  RP+F T+IA+ L          +
Sbjct: 61  NAA--LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L    R    
Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLGWL 177

Query: 181 TSCCNFLMDRAELD 194
                 L+   E D
Sbjct: 178 AEDAERLLATVEHD 191


>gi|325277926|ref|ZP_08143467.1| ribonuclease D [Pseudomonas sp. TJI-51]
 gi|324096941|gb|EGB95246.1| ribonuclease D [Pseudomonas sp. TJI-51]
          Length = 377

 Score =  195 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 4/166 (2%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           + +  +AVDTE + +     +  ++Q+  G     I  +  G  N   L  +L +    K
Sbjct: 22  QQLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLAELLENSGVVK 79

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ VL    G   +P+F T++A+          G    ++E+LGI++ K +  
Sbjct: 80  VLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLN-LGFSMGYSRLVQEVLGIDLPKGETR 138

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           SDW    LSD Q+ YAA D VHL  L      +L    +       
Sbjct: 139 SDWLQRPLSDTQVSYAAEDAVHLAELFTVLRPRLSD-DKYAWVLED 183


>gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
 gi|295313032|ref|ZP_06803730.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
 gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 363

 Score =  195 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQL+  +    I  +         L  +  D+   
Sbjct: 16  LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            SDW    L+  QL YA  DV +L  L+    ++L +    D     
Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179


>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
 gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
          Length = 382

 Score =  195 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
              V  +AVD E   L    +++C++Q+        I  +A    +  +L     D    
Sbjct: 25  LERVPVVAVDLEADSLHHFTEKVCLIQIGVNGDAFLIDPLALS--DLSSLKPFFADPGVI 82

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H   +D+  L+  FG+ +  +F ++IASR         GL D +    G+ + K  +
Sbjct: 83  KVLHGADYDVRSLYRDFGITITGLFDSEIASRFLG--VQSTGLNDVVNRRFGVTMDKGCR 140

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
             DW+   L ++ L YAA DV +L  L  Q   +LQ++GR++     C  L+ R   
Sbjct: 141 KQDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQMGRAEWVAEECE-LLSRVRY 196


>gi|78224579|ref|YP_386326.1| 3'-5' exonuclease [Geobacter metallireducens GS-15]
 gi|78195834|gb|ABB33601.1| 3'-5' exonuclease [Geobacter metallireducens GS-15]
          Length = 382

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +A D E   +   ++++C++Q +   G   I+   A    AP L  +  +    K+FH
Sbjct: 28  PYVACDLEADSMHHYQEKVCLIQFTVP-GLAAIVDPLAVADLAP-LAPVFANPSIRKVFH 85

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +DI  L   FG+ V  +F T IA +       + GL   L++  G+ + K  Q +DW
Sbjct: 86  GADYDIRSLHRDFGIEVNNLFDTMIACQFLGE--REFGLAAVLRKRFGVELDKQYQRADW 143

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           S   L+   ++YAA D   L  L  +   +L+  GR       C  L
Sbjct: 144 SRRPLTAGMIEYAAKDTTLLIELCGRLEAELREKGRIGWVEEECALL 190


>gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 364

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQL+  +    I  +         L  +  D+   
Sbjct: 16  LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            SDW    L+  QL YA  DV +L  L+    ++L +    D     
Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179


>gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS]
 gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|167009819|ref|ZP_02274750.1| ribonuclease III [Francisella tularensis subsp. holarctica FSC200]
 gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
 gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS]
 gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
          Length = 364

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQL+  +    I  +         L  +  D+   
Sbjct: 16  LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            SDW    L+  QL YA  DV +L  L+    ++L +    D     
Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179


>gi|152996550|ref|YP_001341385.1| ribonuclease D [Marinomonas sp. MWYL1]
 gi|150837474|gb|ABR71450.1| ribonuclease D [Marinomonas sp. MWYL1]
          Length = 384

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 3/168 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +  IAVDTE +          ++Q+S GD  V I  ++        L  ++VD    K+F
Sbjct: 34  LPVIAVDTEFIRRTTYFPITGLIQISEGDKAVLIDPLS--IDEWEPLRNLMVDPSVMKVF 91

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+ V     GV   P + T+I                 + E L I ++K +  SD
Sbjct: 92  HACSEDLDVFDRLLGVLPTPFYDTQIGEAYASAQW-SLSYVKLIHEYLQIEVAKDETRSD 150

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           W    L+D Q +YAA DVV+L  +      +L+           C+ L
Sbjct: 151 WVQRPLTDAQKRYAALDVVYLAKVYPMQIARLEAKNMLGWVMEDCDSL 198


>gi|166711789|ref|ZP_02242996.1| ribonuclease D [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 363

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 3/194 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M     H  ++     A     I +DTE +       +L +VQ++ G+  + I  +    
Sbjct: 1   MPHWITHPSELTDRLQAARPARIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPSM 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L      K+ H    D+       GV  RP+F T+IA+ L          +
Sbjct: 61  NAA--LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+  + T +L    R    
Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLGWL 177

Query: 181 TSCCNFLMDRAELD 194
                 L+   E D
Sbjct: 178 AEDAERLLATVEHD 191


>gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 364

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQL+  +    I  +         L  +  D+   
Sbjct: 16  LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            SDW    L+  QL YA  DV +L  L+    ++L +    D     
Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179


>gi|146306804|ref|YP_001187269.1| ribonuclease D [Pseudomonas mendocina ymp]
 gi|145575005|gb|ABP84537.1| ribonuclease D [Pseudomonas mendocina ymp]
          Length = 377

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 5/174 (2%)

Query: 11  IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   CAA R +  +A+DTE + +        ++Q+S GD    I  +     +   L  +
Sbjct: 14  LAEHCAAWRALPFVALDTEFMRVDTFYPIAGLLQVSGGDKAYLIDPL--CIDDWRPLAEL 71

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L  +   K+ H    D+ V     G    P+F T++A+          G    ++ LLGI
Sbjct: 72  LQAQTVVKVLHSCSEDLEVFLRLTGSLPVPLFDTQVAAGYLNLGF-SMGYSRLVQTLLGI 130

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            + K +  SDW    LS  Q+ YAA DV+HL  +    T++L    +       
Sbjct: 131 ELPKGETRSDWLQRPLSATQISYAAEDVLHLVEVYQALTQRLSAE-KHAWVLED 183


>gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549]
          Length = 364

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQL+  +    I  +         L  +  D+   
Sbjct: 16  LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDII 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            SDW    L+  QL YA  DV +L  L+    ++L +    D     
Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179


>gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella tularensis subsp. novicida U112]
 gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
 gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG]
 gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112]
 gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
 gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG]
          Length = 364

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQL+  +    I  +         L  +  D+   
Sbjct: 16  LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLE--DLEFKKLKEIFEDKDII 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            SDW    L+  QL YA  DV +L  L+    ++L +    D     
Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179


>gi|307578800|gb|ADN62769.1| ribonuclease D [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 339

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85
           DTE +        L +VQ++ GD  + +  +  G  +A  L   L      KI H    D
Sbjct: 2   DTEFIREGTFWPELALVQIAIGDEILLVDPLVPGMTDALGLW--LAAPNVIKIMHSASED 59

Query: 86  IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDL 145
           +    Y  GV  RP+F T+I            G +  + ++  + + K +  SDW    L
Sbjct: 60  LIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAKVTNVELGKGETRSDWMHRPL 118

Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE-LDLLGWENVDIF 204
           +  QL YAA+DV +L AL    TE+L  + RS      C  L D  E  +   W ++ I 
Sbjct: 119 TPAQLDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCTRLTDNIEQNENERWPHLAIR 178

Query: 205 S 205
           S
Sbjct: 179 S 179


>gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548]
 gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548]
          Length = 364

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQL+  +    I  +         L  +  D+   
Sbjct: 16  LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDII 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            SDW    L+  QL YA  DV +L  L+    ++L +    D     
Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179


>gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
 gi|224456967|ref|ZP_03665440.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370381|ref|ZP_04986386.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
 gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
          Length = 364

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQL+  +    I  +         L  +  D+   
Sbjct: 16  LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            SDW    L+  QL YA  DV +L  L+    ++L +    D     
Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179


>gi|254994696|ref|ZP_05276886.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
          Length = 386

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 6/182 (3%)

Query: 9   GDIPAECAA---RYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            ++   CA       +++A+DTE +        RLC++Q++   G   ++ +   + +  
Sbjct: 11  NELAQFCAQILRDRPESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLS 69

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  DE   K+FH  R D+  L   F    RP+F T+ AS L   + N  G    ++
Sbjct: 70  PLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVE 129

Query: 125 ELLGINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + LG+ ++K   +  DWS   LS+ +++YA  DV +LH L       L   GR       
Sbjct: 130 QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKGRLTWFLEE 189

Query: 184 CN 185
             
Sbjct: 190 ME 191


>gi|88705065|ref|ZP_01102777.1| ribonuclease D [Congregibacter litoralis KT71]
 gi|88700760|gb|EAQ97867.1| ribonuclease D [Congregibacter litoralis KT71]
          Length = 370

 Score =  195 bits (496), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 3/171 (1%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A  +    D IAVDTE +        + ++QL   D    I  +     +   L  +L D
Sbjct: 15  ALASLAGADEIAVDTEFMRRNSYYPHIALLQLCTDDHAWLIDPLTISNLDG--LRALLTD 72

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+ H    D+ V  +  GV   P+  T+ A+ L        G +  +KELLG+ + 
Sbjct: 73  SACIKVLHSCSEDLEVFRHWLGVLPSPLVDTQRATALLGKGF-GLGYRALVKELLGVELD 131

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           K +  SDW    LS+ Q  YAA DV+ L        E  +  GR       
Sbjct: 132 KGETRSDWLKRPLSESQCHYAALDVLELVPAWRILRELAEEQGRMQWVLDE 182


>gi|313497620|gb|ADR58986.1| Rnd [Pseudomonas putida BIRD-1]
          Length = 377

 Score =  194 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
            +  +AVDTE + +     +  ++Q+  G     I  +  G  N   L  +L D    K+
Sbjct: 23  QLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLADLLEDSGVVKV 80

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+ VL    G   +P+F T++A+          G    ++E+LGI + K +  S
Sbjct: 81  LHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGIELPKGETRS 139

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           DW    LS+ Q+ YAA D VHL  L      +L    +       
Sbjct: 140 DWLQRPLSETQVSYAAEDAVHLAELFSVLRPRLSD-DKYAWVLED 183


>gi|148546540|ref|YP_001266642.1| ribonuclease D [Pseudomonas putida F1]
 gi|148510598|gb|ABQ77458.1| ribonuclease D [Pseudomonas putida F1]
          Length = 377

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
            +  +AVDTE + +     +  ++Q+  G     I  +  G  N   L  +L D    K+
Sbjct: 23  QLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLADLLEDSGVVKV 80

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+ VL    G   +P+F T++A+          G    ++E+LGI + K +  S
Sbjct: 81  LHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGIELPKGETRS 139

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           DW    LS+ Q+ YAA D VHL  L      +L    +       
Sbjct: 140 DWLQRPLSETQVSYAAEDAVHLAELFTVLRPRLSD-DKYAWVLED 183


>gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1]
          Length = 364

 Score =  194 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQL+  +    I  +         L  +  D+   
Sbjct: 16  LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            SDW    L+  QL YA  DV +L  L+    ++L +    D     
Sbjct: 133 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLVKSEYQDFFEQE 179


>gi|226945355|ref|YP_002800428.1| ribonuclease D protein [Azotobacter vinelandii DJ]
 gi|226720282|gb|ACO79453.1| ribonuclease D protein [Azotobacter vinelandii DJ]
          Length = 375

 Score =  194 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  + + CA  R +  +A+DTE + +     +  +VQ+  G     I  +  G  +   L
Sbjct: 11  DASLASHCARWRQLPFVALDTEFVRVDTFYPQTGLVQVGDGRSAYLIDPLDIG--DWRPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+ H    D+ VL    G    P+F T++A+          G    ++ +
Sbjct: 69  AALLEDPAVVKVLHACSEDLEVLLRLTGSLPLPLFDTQLAAAYLN-LGFSMGYSRLVQAV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           LGI + K +  SDW    LS+ Q++YAA D VHL  L +    +L    R
Sbjct: 128 LGIELPKGETRSDWLQRPLSELQIRYAAEDAVHLAELYVALGARLAEDKR 177


>gi|241668633|ref|ZP_04756211.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 364

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 6/185 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQ++  +    I  +     +   L  +  D   +
Sbjct: 16  LKSTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLE--DLDFSKLKDIFEDTNIQ 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+    T + Q  LK  LK++L I + K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQS-QISLKALLKDILDIEMEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
            SDW    LS +Q  YA  DV HL  ++     KL +             L+D  + +  
Sbjct: 133 FSDWRKRPLSQKQFDYALKDVEHLIEIKYHLESKLNQTDYKQYFYEE---LLDIQKTEFN 189

Query: 197 GWENV 201
             EN+
Sbjct: 190 TVENI 194


>gi|26991275|ref|NP_746700.1| ribonuclease D [Pseudomonas putida KT2440]
 gi|24986330|gb|AAN70164.1|AE016655_9 ribonuclease D [Pseudomonas putida KT2440]
          Length = 377

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
            +  +AVDTE + +     +  ++Q+  G     I  +  G  N   L  +L D    K+
Sbjct: 23  QLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--NWQPLADLLEDSAVVKV 80

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+ VL    G   +P+F T++A+          G    ++E+LGI + K +  S
Sbjct: 81  LHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGIELPKGETRS 139

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           DW    LS+ Q+ YAA D VHL  L      +L    +       
Sbjct: 140 DWLQRPLSETQVSYAAEDAVHLAELFTVLRPRLSD-DKYAWVLED 183


>gi|256372386|ref|YP_003110210.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008970|gb|ACU54537.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
          Length = 396

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 11/198 (5%)

Query: 8   EGDIPAECAAR-YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           + D+         V  IA+DTE         RL +VQ++       I  +     +   +
Sbjct: 27  QSDLDELVGVGLGVPRIAIDTEFHRERTYYPRLALVQVAIDRRVWLIDPLRV---DLSPI 83

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
                 ++ E +FH    D+ ++    G R R +F T++A           G    L   
Sbjct: 84  AAWF--DEVELVFHAADQDLEIIERAVGARPRRIFDTQVAGGFLGAGHASLG--ALLDRY 139

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           LG++ISKA+++SDW    L   QL YAA+DV +L AL  +  E+L   GR D A S    
Sbjct: 140 LGVSISKAERTSDWLRRPLEPGQLAYAANDVRYLAALADRLLEELHARGREDWARSEMAR 199

Query: 187 LMDRAELDL---LGWENV 201
           L++R   D+   L W  +
Sbjct: 200 LVERRRRDIEPELAWTRI 217


>gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA]
 gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA]
          Length = 381

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +A D E   +   ++++C++Q +       +  +AA   +   L  +  +    K+FH
Sbjct: 28  PIVACDLEADSMHHYQEKVCLIQFAVPGYAAIVDPLAA--PDISPLAPLFANAAIRKVFH 85

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +DI  L   FG+ V  +F T IA +L      + GL   L++  G+ + K  Q +DW
Sbjct: 86  GADYDIRSLHRDFGIEVNNLFDTMIACQLLGE--REFGLAAQLRKRFGVELDKQYQRADW 143

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           S   L+   ++YA  D   L  L  Q   +L+  GR       C  L
Sbjct: 144 SRRPLTVGMIEYAVKDTTLLIELYRQLVAELEEKGRRGWVEEECELL 190


>gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523]
          Length = 364

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 3/164 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              IAVDTE   +      LC+VQ++  +    I  +     +   L  +  ++  +KI 
Sbjct: 19  TSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLK--DLDFSKLKDIFENKDIQKII 76

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I + K  Q SD
Sbjct: 77  HSATNDIPIIKRFFNCEVNNIFDTQLAAAFL-GFQTQSSLKTLLKEILDIEMEKESQFSD 135

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           W    L+ +QL YA  DV +L  L+    ++L +          
Sbjct: 136 WRNRPLTQKQLNYAIKDVEYLIQLKEYLQQQLIKSEYQGFFEQE 179


>gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7]
 gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7]
          Length = 393

 Score =  194 bits (493), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 3/165 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +A+DTE + +        +VQ+  G     I  +    ++      +L D +  K
Sbjct: 42  RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRREWLIDPLLV--RDWGPFAELLEDPRVVK 99

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  
Sbjct: 100 VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 158

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           SDW    L++ Q++YAA DV HL  + L    +L    R+ L   
Sbjct: 159 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWLLED 203


>gi|325914723|ref|ZP_08177061.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937]
 gi|325539000|gb|EGD10658.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937]
          Length = 364

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 3/194 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M     H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G 
Sbjct: 1   MPHWITHPSELTERLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L      K+ H    D+       GV  RP+F T+IA+ L          +
Sbjct: 61  NEA--LKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+  + + +L  L R    
Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSASQLEYAADDVRYLFAIHDELSRRLTELDRLGWL 177

Query: 181 TSCCNFLMDRAELD 194
                 L+   E D
Sbjct: 178 AEDAERLLATVEHD 191


>gi|77917938|ref|YP_355753.1| RNase D [Pelobacter carbinolicus DSM 2380]
 gi|77544021|gb|ABA87583.1| RNase D [Pelobacter carbinolicus DSM 2380]
          Length = 375

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 4/172 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IAVD E   L   ++++C++Q+S    TV +  +A   ++   L  +L D    
Sbjct: 20  LRDEAVIAVDLEADSLHSYQEKVCLLQISTSTRTVLVDPLAV--EDLAALAPVLADPTIR 77

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KIFH   +DI  LF  F + V+ +F T IA ++      + GL D L + L + + K  Q
Sbjct: 78  KIFHAADYDIRCLFRDFRIEVQGLFDTMIACQMLGE--KRVGLADVLAKYLDVELDKRYQ 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            +DWS   L +  + YA  D  HLH L      +L+ +GR   A      L 
Sbjct: 136 RADWSKRPLEEGMILYAMEDTCHLHRLTEILEGRLRDMGRLSWAEEEFALLQ 187


>gi|168698136|ref|ZP_02730413.1| ribonuclease D [Gemmata obscuriglobus UQM 2246]
          Length = 435

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 7/201 (3%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            H   + A  +       +  DTE +G    R  LC+VQ+S  +    I     G  +  
Sbjct: 17  THPAQLAACLSHLAKAPLVGFDTEFVGEDAYRPELCLVQVSTAEQLFVIDPFECGSLDG- 75

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L+D KR  + H GR D+ + ++  G     VF  +IA+ L    T   G    + 
Sbjct: 76  -FWDLLLDRKRTVVVHAGREDVRMCYFQAGSAPPNVFDVQIAAGLV-GLTYPIGYAGLVH 133

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           +LL   + K +  +DW    L+  Q++YA  DV +L     + TE+L++  R   A    
Sbjct: 134 DLLRQRMQKGETLTDWRQRPLTPAQVRYAYDDVRYLLPAHRKLTERLKKYRRLPWAEEEF 193

Query: 185 NFLMDRAELD---LLGWENVD 202
              + RA  D   +  W  + 
Sbjct: 194 AAAVKRAVADDATIERWRKIK 214


>gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1]
 gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 374

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +A+DTE + +        +VQ+  G     I  +    ++      +L DE+  K
Sbjct: 23  RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 80

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  
Sbjct: 81  VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 139

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           SDW    L++ Q++YAA DV HL  + L    +L    R+ L   
Sbjct: 140 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWLLED 184


>gi|87122723|ref|ZP_01078598.1| Ribonuclease D [Marinomonas sp. MED121]
 gi|86162020|gb|EAQ63310.1| Ribonuclease D [Marinomonas sp. MED121]
          Length = 387

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 4/187 (2%)

Query: 8   EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           + D+   C     +  IAVDTE +          ++Q+S G+  V +  +A    N   L
Sbjct: 23  DDDLVKWCDHFAALPVIAVDTEFIRRTTFYPITGLIQISEGEHAVLVDPLAIS--NWQPL 80

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + ++ ++   K+FH    D+ V     GV   P + T++A                +   
Sbjct: 81  IDLMTNQSVVKVFHACSEDLEVFDRLLGVVPSPFYDTQVAEAYVSGQW-SLSYVKLILAY 139

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
             I I+K +  SDW    L++ Q +YAA DV+HL  +     + L +      A      
Sbjct: 140 KNIEIAKDETRSDWLKRPLTEAQKRYAALDVIHLIDVYHTQMDALDKKNMLAWALEDGAA 199

Query: 187 LMDRAEL 193
           ++ +  L
Sbjct: 200 IIHQYRL 206


>gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
 gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192]
 gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192]
 gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
          Length = 374

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +A+DTE + +        +VQ+  G     I  +    ++      +L DE+  K
Sbjct: 23  RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 80

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  
Sbjct: 81  VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 139

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           SDW    L++ Q++YAA DV HL  + L    +L    R+ L   
Sbjct: 140 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWLLED 184


>gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
 gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
          Length = 409

 Score =  193 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A D E   L    +++C++Q+S    T  I  +A    +   L  +L +    K+FH  
Sbjct: 58  LAFDLEADSLHHYTEKVCLIQVSTNSETALIDPLAP--LDLSPLAPILANPAVRKVFHGA 115

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +D+  L+  FG  VR +F T IAS+       + GL   LK+  G+ + K  Q +DWS 
Sbjct: 116 DYDMRSLYRDFGFEVRNLFDTMIASQFLGE--KEVGLAAALKKRFGVELDKKYQKADWSK 173

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
              S + ++YA  D   L  L LQ  ++L+  GR          +
Sbjct: 174 RPFSPQMIEYAMKDTSLLIKLYLQLEDELRAKGRLAWVEEESEIV 218


>gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016]
 gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016]
          Length = 374

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +A+DTE + +        +VQ+  G     I  +    ++      +L DE+  K
Sbjct: 23  RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 80

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  
Sbjct: 81  VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 139

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           SDW    L++ Q++YAA DV HL  + L    +L    R+ L   
Sbjct: 140 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWLLED 184


>gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
          Length = 399

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQL+  +    I  +         L  +  D+   
Sbjct: 42  LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 99

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q
Sbjct: 100 KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 158

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            SDW    L+  QL YA  DV +L  L+    ++L +    D     
Sbjct: 159 FSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 205


>gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2]
          Length = 380

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +A+DTE + +        +VQ+  G     I  +    ++      +L DE+  K
Sbjct: 29  RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 86

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  
Sbjct: 87  VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 145

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           SDW    L++ Q++YAA DV HL  + L    +L    R+ L   
Sbjct: 146 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDTRLSEEKRAWLLED 190


>gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 366

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 6/185 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQ++  +    I  +     +   L  +  D   +
Sbjct: 16  LKSTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLE--DLDFSKLKDIFEDTNIQ 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+    T + Q  LK  LK++L I + K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQS-QISLKALLKDILDIEMEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
            SDW    LS +Q  YA  DV HL  ++     KL +             L++  + +  
Sbjct: 133 FSDWRKRPLSQKQFDYALKDVKHLIEIKYHLESKLNQTDYKQYFYEE---LLEIQKTEFN 189

Query: 197 GWENV 201
             EN+
Sbjct: 190 TVENI 194


>gi|170723061|ref|YP_001750749.1| ribonuclease D [Pseudomonas putida W619]
 gi|169761064|gb|ACA74380.1| ribonuclease D [Pseudomonas putida W619]
          Length = 377

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 4/166 (2%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R +  +A+DTE + +     +  ++Q+  G+    I  +     +   L  +L D    K
Sbjct: 22  RTLPFVALDTEFMRVDTFYPKAGLIQIGDGERAYLIDPLLIV--DWQPLGELLEDAGVVK 79

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ VL    G   +P+F T++A+          G    ++E+LG+ + K +  
Sbjct: 80  VLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQEVLGLELPKGETR 138

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           SDW    LSD Q+ YAA D VHL  L      +L    +       
Sbjct: 139 SDWLQRPLSDTQVSYAAEDAVHLAELFAALRPRLSD-DKYAWVLED 183


>gi|222474840|ref|YP_002563255.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
 gi|222418976|gb|ACM48999.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
          Length = 386

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 6/182 (3%)

Query: 9   GDIPAECAA---RYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            ++   CA       +++A+DTE +        RLC++Q++   G   ++ +   + +  
Sbjct: 11  NELAQFCAQILRDRPESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLS 69

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  DE   K+FH  R D+  L   F    RP+F T+ AS L   + N  G    ++
Sbjct: 70  PLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVE 129

Query: 125 ELLGINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + LG+ ++K   +  DWS   LS+ +++YA  DV +LH L       L    R       
Sbjct: 130 QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKERLTWFLEE 189

Query: 184 CN 185
             
Sbjct: 190 ME 191


>gi|167035116|ref|YP_001670347.1| ribonuclease D [Pseudomonas putida GB-1]
 gi|166861604|gb|ABZ00012.1| ribonuclease D [Pseudomonas putida GB-1]
          Length = 377

 Score =  192 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
            +  +AVDTE + +     +  ++Q+  G     I  +  G  +   L  +L D    K+
Sbjct: 23  QLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPLLIG--DWQPLADLLEDSGVVKV 80

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+ VL    G   +P+F T++A+          G    ++++LGI + K +  S
Sbjct: 81  LHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGF-SMGYSRLVQDVLGIELPKGETRS 139

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           DW    LS+ Q+ YAA D VHL  L  +   +L    +       
Sbjct: 140 DWLQRPLSETQVSYAAEDAVHLAELFTELRPRLSD-DKYTWVLED 183


>gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1]
 gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1]
          Length = 374

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +A+DTE + +        +VQ+  G     I  +    ++      +L DE+  K
Sbjct: 23  RTQPYLALDTEFMRVDTFYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 80

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  
Sbjct: 81  VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 139

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           SDW    L++ Q++YAA DV HL  + L    +L    R+ L   
Sbjct: 140 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDTRLSEEKRAWLLED 184


>gi|325924432|ref|ZP_08185961.1| ribonuclease D [Xanthomonas gardneri ATCC 19865]
 gi|325545080|gb|EGD16405.1| ribonuclease D [Xanthomonas gardneri ATCC 19865]
          Length = 364

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 3/194 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M     H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G 
Sbjct: 1   MPHWITHPSELTQRLHAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L      K+ H    D+       GV  RP+F T+IA+ L          +
Sbjct: 61  NAA--LGEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 117

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+  + + +L    R    
Sbjct: 118 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELSRRLTEQDRLGWL 177

Query: 181 TSCCNFLMDRAELD 194
                 L+   E D
Sbjct: 178 AEDAERLLATVEHD 191


>gi|188991267|ref|YP_001903277.1| hypothetical protein xccb100_1872 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733027|emb|CAP51225.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 362

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 4/194 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M     H  ++      R    I +DTE +       +L +VQ++ G+  + I  +  G 
Sbjct: 1   MPHWITHPSELTERLQLRP-SRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +A  L   LV     K+ H    D+       GV  RP+F T+IA+ L          +
Sbjct: 60  TDA--LKDWLVAPDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 116

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+    T KL    R    
Sbjct: 117 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTAKLTAQDRLGWL 176

Query: 181 TSCCNFLMDRAELD 194
                 L+   E D
Sbjct: 177 AEDGERLLGTVEHD 190


>gi|21231744|ref|NP_637661.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768130|ref|YP_242892.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004]
 gi|21113449|gb|AAM41585.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573462|gb|AAY48872.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004]
          Length = 362

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 4/194 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M     H  ++      R    I +DTE +       +L +VQ++ G+  + I  +  G 
Sbjct: 1   MPHWITHPSELTERLQLRP-SRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +A  L   L+     K+ H    D+       GV  RP+F T+IA+ L          +
Sbjct: 60  TDA--LKDWLIAPDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQ 116

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++E+ G  ++K +  SDW    LS  QL+YAA DV +L A+    T KL    R    
Sbjct: 117 KLVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTAKLTAQDRLGWL 176

Query: 181 TSCCNFLMDRAELD 194
                 L+   E D
Sbjct: 177 AEDGERLLGTVEHD 190


>gi|71898238|ref|ZP_00680412.1| Ribonuclease D [Xylella fastidiosa Ann-1]
 gi|71731977|gb|EAO34034.1| Ribonuclease D [Xylella fastidiosa Ann-1]
          Length = 339

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 4/181 (2%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85
           DTE +        L +VQ++  D  + +  +  G  +A  L   L      KI H    D
Sbjct: 2   DTEFIREGTFWPELALVQIAIEDEILLVDPLVPGMTDALGLW--LAAPNVIKIMHSASED 59

Query: 86  IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDL 145
           +    Y  GV  RP+F T+I            G +  + ++  + + K +  SDW    L
Sbjct: 60  LIAFKYACGVLPRPLFDTQI-GAALTGLGGGMGYQKLVAKVTNVELGKGETRSDWMHRPL 118

Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE-LDLLGWENVDIF 204
           +  QL YAA+DV +L  L    TE+L  + RS      C  L D  E  +   W ++ I 
Sbjct: 119 TPAQLDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCTRLTDNIEQNENERWPHLAIR 178

Query: 205 S 205
           S
Sbjct: 179 S 179


>gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 364

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVDTE   +      LC+VQL+  +    I  +         L  +  D+   
Sbjct: 16  LKNTSQIAVDTEFYWMRTYYPELCLVQLATENEIFLIDTLK--DLEFKKLKEIFEDKDIL 73

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI ++   F   V  +F T++A+     +  Q  LK  LKE+L I I K  Q
Sbjct: 74  KIIHSATNDIPIIKRFFNCEVNNIFDTQLAATFL-GFQTQSSLKTLLKEILDIEIEKESQ 132

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            SDW    L+  QL Y+  DV +L  L+    ++L +    D     
Sbjct: 133 FSDWRNRPLTQNQLNYSIKDVEYLIQLKEYLQQQLAKSEYQDFFEQE 179


>gi|89094008|ref|ZP_01166952.1| ribonuclease D [Oceanospirillum sp. MED92]
 gi|89081682|gb|EAR60910.1| ribonuclease D [Oceanospirillum sp. MED92]
          Length = 397

 Score =  191 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 10/207 (4%)

Query: 2   TTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
             I +   +  +EC    R +  IA+DTE   +        ++Q++       I  +   
Sbjct: 18  NPIWITSAEQLSECCEKWRNLPLIALDTEFQRVDTFYPLPGLIQVADDQACYLIDPLEIS 77

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +  +L  +  DE   K+ H    D+ +     G    P+F T+IA+ L   +    GL
Sbjct: 78  --DFSSLSTLFKDEGVVKVMHAATEDLELFHKEIGALPVPLFDTQIAAALIN-WGFSMGL 134

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           +  L+  L + + K + +S+W    L+  Q +YAA DV +L A+     ++L   G    
Sbjct: 135 QRMLESCLSVQLEKHETTSNWLQRPLTSSQEKYAALDVAYLPAIYEIQRQELLSRGHFHW 194

Query: 180 ATSCCNFLMDRAELDLLGWENVDIFSH 206
               C+ ++  A +D     +VD FS+
Sbjct: 195 VEQECSAMLADAAID-----DVDGFSY 216


>gi|56416471|ref|YP_153545.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|56387703|gb|AAV86290.1| ribonuclease D [Anaplasma marginale str. St. Maries]
          Length = 401

 Score =  191 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 6/182 (3%)

Query: 9   GDIPAECAA---RYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            ++   CA       +++A+DTE +        RLC++Q++   G   ++ +   + +  
Sbjct: 11  NELAQFCAQILRDRPESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQC-VVDVLDERLDLS 69

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  DE   K+FH  R D+  L   F    RP+F T+ AS L   + N  G    ++
Sbjct: 70  PLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYSKLVE 129

Query: 125 ELLGINISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + LG+ ++K   +  DWS   LS+ +++YA  DV +LH L       L    R       
Sbjct: 130 QFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKERLTWFLEE 189

Query: 184 CN 185
             
Sbjct: 190 ME 191


>gi|91792982|ref|YP_562633.1| ribonuclease D [Shewanella denitrificans OS217]
 gi|91714984|gb|ABE54910.1| ribonuclease D [Shewanella denitrificans OS217]
          Length = 371

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 3/166 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    + +DTE +       RL ++Q   G     I  +A   ++      +L      K
Sbjct: 21  QSSPLLVLDTEFVRTRTYYARLGLIQAFDGKTLALIDPVA--IEDLSPFWQLLTAPHITK 78

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V  +    +  P+F ++IA+ L     +  G    ++E L + I K +  
Sbjct: 79  LVHSCSEDLEVFAHYGHCQPAPLFDSQIAASLA-GLGHGLGYAKLVQECLSVEIDKGESR 137

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +DW    L+D QLQYAA+DV +L+ L     EKL   GR +     
Sbjct: 138 TDWMKRPLTDAQLQYAANDVFYLYKLYPLLLEKLNANGRVEWLLEE 183


>gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21]
 gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21]
          Length = 377

 Score =  190 bits (485), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +A D E   L    +++C++Q+S       I  +A    +   L  +  +   +KIFH
Sbjct: 33  SVLAFDLEADSLHHYTEKVCLIQVSSASEDRLIDPLAPI--DVKVLAPIFANPAIKKIFH 90

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+  L+  FG+ V  +F T IAS+      ++ GL   LK+  G+ + K  Q +DW
Sbjct: 91  GADYDMRSLYRDFGIEVVNLFDTMIASQFLGE--SEFGLAALLKKRFGVELDKRYQKADW 148

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           S    S E L YA  D   L  L  Q   +L++ GR          +
Sbjct: 149 SKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGRLAWVEEESELV 195


>gi|57239422|ref|YP_180558.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579394|ref|YP_197606.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|57161501|emb|CAH58427.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58418020|emb|CAI27224.1| Ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 389

 Score =  190 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 3/177 (1%)

Query: 10  DIPAECAARYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+  +        IAVDTE +        RL ++Q++  +G   +I + A   +   L  
Sbjct: 14  DVCNQLLMSCPKFIAVDTEFIRNCNEYYPRLSLIQIAWSEGKC-VIDVLADDIDLSVLES 72

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  +++  KIFH  + DI  L   F     P+F ++IA+     Y N  G    + + L 
Sbjct: 73  IFYNKEIVKIFHDCKQDIDALLTKFPRIPYPIFDSQIAAMFCAYYDNAVGYSKLVAQFLD 132

Query: 129 INISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           +++ K   + S+W    LSD+++QYA  DVV+L+ L     + L    R        
Sbjct: 133 VSLDKLTLKRSNWLMRPLSDDKIQYALDDVVYLYELYQVLYDNLISSKRLLWFLEEM 189


>gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem]
 gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem]
          Length = 377

 Score =  190 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +A D E   L    +++C++Q+S       I  +A    +   L  +  +   +KIFH
Sbjct: 33  SVLAFDLEADSLHHYTEKVCLIQVSSTSEDRLIDPLAPI--DVKVLAPIFANPAIKKIFH 90

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+  L+  FG+ V  +F T IAS+      ++ GL   LK+  G+ + K  Q +DW
Sbjct: 91  GADYDMRSLYRDFGIEVVNLFDTMIASQFLGE--SEFGLAALLKKRFGVELDKRYQKADW 148

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           S    S E L YA  D   L  L  Q   +L++ GR          +
Sbjct: 149 SKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKGRLAWVEEESELV 195


>gi|146281747|ref|YP_001171900.1| ribonuclease D [Pseudomonas stutzeri A1501]
 gi|145569952|gb|ABP79058.1| ribonuclease D [Pseudomonas stutzeri A1501]
          Length = 401

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 5/179 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V +  +   CA  R +  +AVDTE + +        +VQ+  G     I  +A   ++  
Sbjct: 36  VDDAHLARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAV--RDWH 93

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L D    K+ H    D+ VL    G   +P+F T++A+          G    ++
Sbjct: 94  PFATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIGF-SMGYSRLVQ 152

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            +LGI + K +  SDW    LS+ Q++YAA D  HL  L      KL    R+      
Sbjct: 153 AVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKLSDDKRA-WVLED 210


>gi|70728873|ref|YP_258622.1| ribonuclease D [Pseudomonas fluorescens Pf-5]
 gi|68343172|gb|AAY90778.1| ribonuclease D [Pseudomonas fluorescens Pf-5]
          Length = 377

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 8/188 (4%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           G + A+   + +  +A+DTE + +        ++Q+  G     I  +     N   L  
Sbjct: 15  GQLCAQW--QQLPFVALDTEFMRVDTFYPIAALLQIGDGQRAYLIDPLT--IDNWQPLAA 70

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+LG
Sbjct: 71  LLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGF-SMGYSRLVQEVLG 129

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           I++ K +  SDW    LS+ Q+ YAA D VHL  +  +   +L    +          L+
Sbjct: 130 IDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAQVFTELRPRLS-EDKYRWVLEDGAELV 188

Query: 189 D--RAELD 194
              R E+D
Sbjct: 189 ANLRREVD 196


>gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719]
 gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719]
          Length = 374

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +A+DTE + +        +VQ+  G     I  +    ++      +L DE+  K
Sbjct: 23  RTQPYLALDTEFMRVDTSYPAAGLVQVGDGRQEWLIDPLL--IQDWSPFAELLEDERVVK 80

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ V     G    P+F T++A+       +  G    +KE+L I++ K +  
Sbjct: 81  VLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYL-GMAHSMGYSKLVKEVLDIDLPKDETR 139

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           SDW    L++ Q++YAA DV HL  + L    +L    R+ L   
Sbjct: 140 SDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEKRAWLLED 184


>gi|330808098|ref|YP_004352560.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376206|gb|AEA67556.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 377

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 4/166 (2%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           + +  +A+DTE + +        ++Q+  G     I  +     N   L  +L +    K
Sbjct: 22  QQLPFVALDTEFMRVDTFYPIAGLLQIGDGKRAYLIDPLT--IDNWQPLAALLENPAVLK 79

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ VL    G    P+F T++A+          G    ++E+LGI + K +  
Sbjct: 80  VLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLN-LGFSMGYSRLVQEVLGIELPKGETR 138

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           SDW    LS+ Q+ YAA D VHL  + +    KL    +       
Sbjct: 139 SDWLQRPLSETQISYAAEDAVHLAEVFVLLRPKLSDE-KYRWVLED 183


>gi|117620631|ref|YP_856729.1| ribonuclease D [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562038|gb|ABK38986.1| ribonuclease D [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 379

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 4/179 (2%)

Query: 7   HEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
            + ++    A+     +A+DTE +       +L + Q+  G+    +  +     +  +L
Sbjct: 17  QQAELDQYLASLADVPLAIDTEFVRTRTYYPQLGLFQIYDGEHLALLDPL---TLDLSSL 73

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
              L    +  I H    D+ ++ +  G     +  T++A+     Y    G    + E 
Sbjct: 74  WQRLGRAGQIAILHASGEDLELIQHQAGHLPNQMHDTQLAAAFL-GYGVSVGFGALVNEF 132

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           L + + K Q  +DW A  L+  QL+YAA+DV +L  L  +   KL   G+       C 
Sbjct: 133 LAVELEKDQARTDWLARPLTPRQLEYAAADVFYLLPLYEKVMAKLHESGKFAWFEQECQ 191


>gi|330829588|ref|YP_004392540.1| ribonuclease D [Aeromonas veronii B565]
 gi|328804724|gb|AEB49923.1| Ribonuclease D [Aeromonas veronii B565]
          Length = 370

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 4/182 (2%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +   + ++    A+     +A+DTE +       +L + Q+  G+    +  +     + 
Sbjct: 5   LITQQDELEQYLASLADVPLAIDTEFVRTRTYYPQLGLFQIYDGEHLALLDPL---TLDL 61

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L   L    +  I H    D+ ++ +  G     +  T++A+     Y    G    +
Sbjct: 62  SALWQRLGRAGQIAILHASGEDLELIQHQAGHLPNQMHDTQLATAFL-GYGVSVGFGALV 120

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            E LG+ + K Q  +DW A  L+  QL+YAA+DV +L  L  +   KL+  G+       
Sbjct: 121 NEFLGVELEKDQARTDWLARPLTPRQLEYAAADVFYLMPLYEKVMAKLRESGKFAWFEQE 180

Query: 184 CN 185
           C 
Sbjct: 181 CQ 182


>gi|58617449|ref|YP_196648.1| ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58417061|emb|CAI28174.1| Ribonuclease D [Ehrlichia ruminantium str. Gardel]
          Length = 389

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 3/177 (1%)

Query: 10  DIPAECAARYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+ ++        IAVDTE +        RL ++Q++   G   +I + A   +   L  
Sbjct: 14  DVCSQLLMSCPKFIAVDTEFIRNCNEYYPRLSLIQIAWSKGKC-VIDVLADDIDLSVLES 72

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  +++  KIFH  + DI  L   F     P+F ++IA+     Y N  G    + + L 
Sbjct: 73  IFYNKEIVKIFHDCKQDIDALLTKFPRIPYPIFDSQIAAMFCAYYDNAVGYSKLVAQFLD 132

Query: 129 INISK-AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           +++ K   + S+W    LSD+++QYA  DVV+L+ L     + L    R        
Sbjct: 133 VSLDKLTLKRSNWLMRPLSDDKIQYALDDVVYLYELYQVLYDNLISSKRLLWFLEEM 189


>gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea sp. MED297]
 gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297]
          Length = 380

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 5/179 (2%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
             +  E AA     IA+DTE +        L ++Q+   D    I  +     +   LV 
Sbjct: 15  AQVADEWAA--ASVIALDTEFVRTDSFYAHLGLIQVGIEDQVWLIDPLQIN--DWAPLVR 70

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L D    K+ H    D  VL +  GV ++ VF T+IA+     +  Q      ++ +  
Sbjct: 71  VLSDPAIVKVLHALSEDAEVLAHHLGVELQNVFDTQIAAGFL-GHPVQMSYARLVEAICD 129

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           + + K    SDW    L+DEQ  YAA+DV+ L+ +      +L+   R          +
Sbjct: 130 VELPKEATRSDWLQRPLADEQCFYAAADVLWLYRVYQHCAAQLKEQNRYAWVAEDSQRM 188


>gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B]
 gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B]
          Length = 372

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 3/163 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D +A+DTE          + +VQ++  D    I  +         L  +L      K+ H
Sbjct: 23  DFVAIDTEFRRRDTFWPEVALVQIATADQVWLIDPLPLTDTG--PLAELLQKSTLTKVLH 80

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+ V     GV   P+F T+ A+ L   Y         ++ +  +++ K + +SDW
Sbjct: 81  SAGEDLEVFQAWLGVLPSPLFDTQKAAALL-GYGFGLSYAKLVEAVCQVSLDKDETNSDW 139

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
               L+  Q +YAA DV +L  +  +        GR +     
Sbjct: 140 LVRPLTSAQCRYAAQDVTYLVDVYSRLLGDAGTQGRLEWILEE 182


>gi|285018846|ref|YP_003376557.1| ribonuclease d protein [Xanthomonas albilineans GPE PC73]
 gi|283474064|emb|CBA16565.1| probable ribonuclease d protein [Xanthomonas albilineans]
          Length = 361

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 4/192 (2%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           M     H  ++    A R    I +DTE +       +L +VQ++  +  + I  +  G 
Sbjct: 1   MPYWIKHPNELAERLAQRPA-RIGLDTEFVRERTYWPQLALVQMAVAEEILLIDPLIPGM 59

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
             A  L   L D    KI H    D+       G   RP+F T+  +          G +
Sbjct: 60  PQA--LAPWLSDPGILKIMHSASEDLVTFKCACGTLPRPLFDTQ-IAAGLAGIGAGMGYQ 116

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + ++ GI+++K +  SDW    LS  QL+YAA DV HL AL      +LQ L RS   
Sbjct: 117 KLVLDITGIHLTKGETRSDWLRRPLSPAQLEYAADDVRHLFALHDTLHARLQALDRSTWL 176

Query: 181 TSCCNFLMDRAE 192
                 L+   E
Sbjct: 177 QEDGERLLGTVE 188


>gi|104783019|ref|YP_609517.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
 gi|95112006|emb|CAK16733.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
          Length = 377

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 4/166 (2%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R +  +A+DTE + +     +  +VQ+  G+    I  +     +   L  +L D    K
Sbjct: 22  RKLPFVALDTEFMRVDTFYPKAGLVQIGDGNQAFLIDPLLIS--DWQPLADLLDDSGVVK 79

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ VL    G   +P+F T++A+          G    ++E+LG+ + K +  
Sbjct: 80  VLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNIGF-SMGYSRLVQEVLGLELPKGETR 138

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           SDW    LS+ Q+ YAA D VHL  L      +L    +       
Sbjct: 139 SDWLQRPLSETQVSYAAEDAVHLAELFSALRPRLSD-DKFAWVLDD 183


>gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18]
 gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18]
          Length = 377

 Score =  189 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +A D E   L    +++C++Q+S       I  +A    +   L  +  +   +KIFH
Sbjct: 33  SVLAFDLEADSLHHYTEKVCLIQVSSESENRLIDPLAPI--DVRVLAPIFANPAIKKIFH 90

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+  L+  FG+ V  +F T IAS+      ++ GL   LK+  G+ + K  Q +DW
Sbjct: 91  GADYDMRSLYRDFGIEVVNLFDTMIASQFLGE--SEFGLAALLKKRFGVELDKRYQKADW 148

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           S    S E L+YA  D   L  L  Q   +L   GR          +
Sbjct: 149 SKRPFSQEMLEYAMKDTSLLIELYRQLEAELLAKGRLAWVEEESELV 195


>gi|225629620|ref|ZP_03787627.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591525|gb|EEH12558.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 135

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/133 (50%), Positives = 90/133 (67%)

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              KIFH+ RFD++++ Y       P +CTKIASRL RTYT+ H LK+   ELL   ++K
Sbjct: 1   NITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLELLDTKLNK 60

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
            QQSSDW  ++L+D+Q  YAASDV++LH ++ +    L+R  R +LA  C  FL  R EL
Sbjct: 61  QQQSSDWGDENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKCFEFLPTRIEL 120

Query: 194 DLLGWENVDIFSH 206
           DL+GWENVDIF+H
Sbjct: 121 DLMGWENVDIFNH 133


>gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
          Length = 381

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 4/171 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
                 +A D E   +   ++++C++Q +       +  +AA   +   L  +  +    
Sbjct: 24  LGREPIVACDLEADSMHHYQEKVCLIQFAVPGYAAIVDPLAA--PDISPLAPLFANAAIR 81

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH   +DI  L   FG+ V  +F T IA +L      + GL   L++  G+ + K  Q
Sbjct: 82  KVFHGADYDIRSLHRDFGMEVNNLFDTMIACQLLGE--REFGLAAQLRKRFGVELDKQYQ 139

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            +DWS   L+   ++YA  D   L  L  Q    L+  GR       C  L
Sbjct: 140 RADWSRRPLTPGMIEYAVKDTTLLIELCWQLATDLEAKGRRGWVEEECELL 190


>gi|77457615|ref|YP_347120.1| ribonuclease D [Pseudomonas fluorescens Pf0-1]
 gi|77381618|gb|ABA73131.1| putative ribonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 377

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 5/174 (2%)

Query: 11  IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   CA  + +  +A+DTE + +        ++Q+  G     I  +         L  +
Sbjct: 14  LAQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQVGDGKRAYLIDPLTINA--WQPLAAL 71

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+LGI
Sbjct: 72  LENPAVLKVLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGF-SMGYSRLVQEVLGI 130

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            + K +  SDW    LSD Q+ YAA D VHL  + +Q   KL    +       
Sbjct: 131 ELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVFVQLRPKLSD-DKFAWVLED 183


>gi|119470938|ref|ZP_01613522.1| putative RNase D, processing tRNA precursors [Alteromonadales
           bacterium TW-7]
 gi|119445960|gb|EAW27240.1| putative RNase D, processing tRNA precursors [Alteromonadales
           bacterium TW-7]
          Length = 376

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 3/173 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    +A+DTE +        + ++Q+  G+    I  +A  + +  +   +L D    K
Sbjct: 20  QNKPILAIDTEFMRRRTLYPEVALIQVFDGEHLALIDPLA--ELSLFDFWQVLKDPAVLK 77

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    DI V     G    P+F T+ A +L     N  G    +K LLGI I K++  
Sbjct: 78  VLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLL-GEGNCMGFALMVKTLLGIEIDKSESR 136

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++W    L+ +QL YAA+D  HL        +++      ++       + ++
Sbjct: 137 TNWLQRPLTTKQLDYAAADTFHLLPCFELIIDRINNADLFEIVLDESELIANK 189


>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
 gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
          Length = 380

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
             + IAVDTE+ GL   ++++C++Q S       +  +A+   N   L  +  +   EK+
Sbjct: 27  ACEQIAVDTESNGLHAYQEQICLIQFSVPGADYLVDPLASV--NLSGLNEIFSNPGIEKV 84

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH   +DI  L   FG     +F T IA+R+     ++ GL   L+E  G+ + K  Q +
Sbjct: 85  FHAAEYDILCLKRDFGFTFTHLFDTMIAARILG--RSEVGLAALLEEHFGVTLDKRYQRA 142

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           +W+   L    L YA  D  +L  LR    ++L   G + LA    
Sbjct: 143 NWARRPLPPAMLNYARLDTHYLIDLRNHLAKELAERGLTALAEEDF 188


>gi|327479994|gb|AEA83304.1| ribonuclease D [Pseudomonas stutzeri DSM 4166]
          Length = 374

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 5/179 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V +  +   CA  R +  +AVDTE + +        +VQ+  G     I  +A   ++  
Sbjct: 9   VDDAHLARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAV--RDWH 66

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L D    K+ H    D+ VL    G   +P+F T++A+          G    ++
Sbjct: 67  PFATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIGF-SMGYSRLVQ 125

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            +LGI + K +  SDW    LS+ Q++YAA D  HL  L      KL    R+      
Sbjct: 126 AVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKLSDDKRA-WVLED 183


>gi|189426679|ref|YP_001953856.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
 gi|189422938|gb|ACD97336.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
          Length = 381

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 5/186 (2%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+  H   +   CA       +A+D E   +   R+++C++QLS   GT  +  +     
Sbjct: 7   TVIEHNHQLEQLCAELTDETELALDLEADSMHHYREKVCLLQLSNRAGTWLVDPLRLS-- 64

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +   L  +L       + H G +DI  L   FG+ V+ +F T +A++   T   + GL  
Sbjct: 65  DLSPLRVLLARPGLRTVLHGGDYDIRSLHRDFGIVVQQMFDTMVAAQF--TGATEFGLAA 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            L+E  GI + K  Q +DWS   L+ E   YAA D  HL  L  +   +L++LGR +   
Sbjct: 123 LLREHFGIELDKRFQKADWSKRPLTTEMADYAAHDTAHLLELADRLHARLEQLGRREWVA 182

Query: 182 SCCNFL 187
             C  L
Sbjct: 183 EECALL 188


>gi|145299067|ref|YP_001141908.1| ribonuclease D [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851839|gb|ABO90160.1| ribonuclease D [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 379

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 4/182 (2%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +   + ++    A+     +A+DTE +       +L + Q+  G+    +  +     + 
Sbjct: 14  LITQQAELEQYLASLADVPLAIDTEFVRTRTYYPQLGLFQIYDGEHLALLDPL---TLDL 70

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L   L    +  I H    D+ ++ +  G     +  T++A+     Y    G     
Sbjct: 71  APLWQRLGRAGQIAILHASGEDLELIQHEAGHLPNQMHDTQLATAFL-GYGVSVGFGALA 129

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           KE LG+++ K Q  +DW A  L++ QL+YAA+DV++L  L  +   KL   G+       
Sbjct: 130 KEFLGVDLVKDQARTDWLARPLTERQLEYAAADVLYLMPLYEKVMAKLHESGKFAWFEQE 189

Query: 184 CN 185
           C 
Sbjct: 190 CQ 191


>gi|315123522|ref|YP_004065528.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
           SM9913]
 gi|315017282|gb|ADT70619.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
           SM9913]
          Length = 376

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 3/173 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    +A+DTE +        + ++Q+  G+    I  +A  + +  +   +L D K  K
Sbjct: 20  KNKPILAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLA--ELSLFDFWQILKDPKVLK 77

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    DI V     G    P+F T+ A +L     N  G    +K LL I I K++  
Sbjct: 78  VLHSPSEDIEVFQKYAGFVPYPLFDTQFALQLL-GEGNCMGFALMVKTLLNIEIDKSESR 136

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++W    L+ +QL+YAA+D  HL        + ++     D+  +    + ++
Sbjct: 137 TNWLQRPLTQKQLEYAAADTYHLLPCFELIIDSIKAADLFDIVINESELVANK 189


>gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
 gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
          Length = 373

 Score =  187 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 70/172 (40%), Gaps = 6/172 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLV 71
           AA   DA+ VDTE +       ++ +VQL        GT  +I     +  AP L  +  
Sbjct: 18  AAIGCDAVMVDTEFMRRNTFYPQVALVQLCFCGGGATGTAWMIDPLKIEDPAP-LANLFK 76

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D    KI H    D+ V     GV   P+F T+ A+ L        G +  + EL   ++
Sbjct: 77  DAGVIKILHSASEDLEVFQRWLGVLPLPLFDTQKAAALV-GLDFGLGYRSMVLELCNEDL 135

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            K +  SDW    L++ Q  YAA DV+ L        E+   + R D     
Sbjct: 136 PKGETRSDWLQRPLTESQCHYAAQDVIWLLDAYQIIAERCHSMQRYDWVLED 187


>gi|213022814|ref|ZP_03337261.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 182

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 3/156 (1%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
            +L ++QL  G     I  +  G  +   L  +L D    K  H G  D+ V    FG  
Sbjct: 2   PQLGLIQLFDGANVALIDPL--GISDWSPLKAVLRDTGITKFLHAGSEDLEVFLNAFGEL 59

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
             P+  T+I +          G    ++E  G+ + K++  +DW A  LS+ Q +YAA+D
Sbjct: 60  PEPLIDTQILAAFC-GRPLSWGFASMVEEYTGVALDKSESRTDWLARPLSERQCEYAAAD 118

Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           V +L  +  +   + +  G    A   C  +  R +
Sbjct: 119 VWYLLPIAKKLMIETEAAGWLPAALDECRLMQQRRQ 154


>gi|302525782|ref|ZP_07278124.1| ribonuclease D [Streptomyces sp. AA4]
 gi|302434677|gb|EFL06493.1| ribonuclease D [Streptomyces sp. AA4]
          Length = 420

 Score =  187 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 84/192 (43%), Gaps = 10/192 (5%)

Query: 2   TTIRVHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIA 57
           T   V + D  AE  AR      A+AVDTE         +  +VQL   G GTV I  IA
Sbjct: 32  TPPVVADPDALAEACARLAAGTGAVAVDTERASGYRYWPKAYLVQLRREGSGTVLIDPIA 91

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                AP L  +L D   E + H    D+  L     +R R +F T++A RL      + 
Sbjct: 92  LADDLAP-LRDVLNDT--EWVLHAASQDLPCL-AELNLRPRSLFDTELAGRLAGY--ERV 145

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            L   ++ LLG  + K   ++DWS   L  + L YAA DV  L+ LR +   +L   G+ 
Sbjct: 146 ALGTLVELLLGYTLEKGHSAADWSKRPLPVDWLNYAALDVELLNELREKLEAELTAQGKL 205

Query: 178 DLATSCCNFLMD 189
           + A      +  
Sbjct: 206 EWARQEFEAVRT 217


>gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter sp. FRC-32]
 gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter sp. FRC-32]
          Length = 390

 Score =  187 bits (476), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + +A D E   L    +++C++Q+S    T  I  +A    +   L  +L D    K+FH
Sbjct: 40  NILAFDLEADSLHHYTEKVCLIQVSNLSQTALIDPLAPV--DLSPLAPVLADRGIRKVFH 97

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
              +D+  L+  FG+ V  +F T IA +       + GL   LK+  G+ ++K  Q +DW
Sbjct: 98  GADYDMRSLYRDFGLEVCNMFDTMIACQFLGE--KEVGLAAALKKRFGVELNKKYQKADW 155

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           S    S E ++YA  D   L  L LQ  E+L+  GR +        +
Sbjct: 156 SKRPFSAEMIEYAKMDTALLIRLYLQLEEELRAKGRLEWVEEESELV 202


>gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
 gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
          Length = 388

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 4/173 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           + +    IAVD E   +   +++ C++Q++       +  +     +   L  +L +++ 
Sbjct: 30  SLQSQKCIAVDLEADSMFHYQEKACLLQITSNGLNYIVDPL--CDCDVKALAPILENDEI 87

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           +KIFH   +D+  LF  FG+ +  +F T++A+R       Q GL   L+   G+ + K  
Sbjct: 88  QKIFHGADYDVRCLFRDFGIELHNLFDTQVAARFLGE--PQTGLAPLLESRFGVQLEKKY 145

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           Q  +WS   L  E + YAA+D VHL  L     ++L    R       C  L 
Sbjct: 146 QKKNWSLRPLPPEMMAYAANDTVHLLELAEILKKELVEKDRLFWVEEECEILT 198


>gi|229589039|ref|YP_002871158.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
 gi|229360905|emb|CAY47765.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
          Length = 377

 Score =  186 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 4/166 (2%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           + +  +A+DTE + +        ++Q+  G     I  +     N   L  +L +    K
Sbjct: 22  QQLPFVALDTEFMRVDTFYPIAGLIQIGDGVRAYLIDPLT--IDNWQPLAALLENPAVIK 79

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ VL    G    P+F T++A+          G    ++ +L I + K +  
Sbjct: 80  VVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQAVLDIELPKGETR 138

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           SDW    LS+ Q+ YAA D VHL  +  +   +L    +       
Sbjct: 139 SDWLQRPLSETQISYAAEDAVHLAEVYTRLRPRLSDE-KYAWVLDD 183


>gi|77362412|ref|YP_341986.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877323|emb|CAI89540.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 376

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 6/188 (3%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    +A+DTE +        + ++Q+  G+    I  +A  + +  +   +L D    K
Sbjct: 20  KNKPVLAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLA--ELSLFDFWQILKDPAVLK 77

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +FH    DI V     G    P+F T+ A ++     N  G    +K LL I I K++  
Sbjct: 78  VFHSPSEDIEVFQKYAGFVPTPLFDTQFALQIL-GEGNCMGFALMVKTLLDIEIDKSESR 136

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL---D 194
           ++W    L+++QL+YAA+D  HL        + ++     ++  S    + ++ E    D
Sbjct: 137 TNWLQRPLTNKQLEYAAADAYHLLPCFNLIIDSVKAADLFNIVISESELVANKREFQTPD 196

Query: 195 LLGWENVD 202
            L ++++ 
Sbjct: 197 ELLYKDIK 204


>gi|312959586|ref|ZP_07774103.1| ribonuclease D [Pseudomonas fluorescens WH6]
 gi|311286303|gb|EFQ64867.1| ribonuclease D [Pseudomonas fluorescens WH6]
          Length = 377

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 4/166 (2%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           + +  +A+DTE + +        ++Q+  G     I  +     N   L  +L +    K
Sbjct: 22  QQLPFVALDTEFMRVDTFYPIAGLIQIGDGVRAYLIDPLT--IDNWQPLAALLENPSVIK 79

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+ VL    G    P+F T++A+          G    ++ +L I++ K +  
Sbjct: 80  VVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQAVLDIDLPKGETR 138

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           SDW    LS+ Q+ YAA D VHL  +  +   KL    +       
Sbjct: 139 SDWLQRPLSETQISYAAEDAVHLAEVYTRLRPKLSD-DKYAWVLED 183


>gi|254514489|ref|ZP_05126550.1| ribonuclease D [gamma proteobacterium NOR5-3]
 gi|219676732|gb|EED33097.1| ribonuclease D [gamma proteobacterium NOR5-3]
          Length = 372

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 3/171 (1%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A  A      IAVDTE +        + ++QL   D    I  +     +   L  ++ D
Sbjct: 15  ALDALSNASEIAVDTEFMRRNTYYPHIALLQLCSDDHAWLIDPLKV--TDLDGLRALMTD 72

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+ H    D+ V  +  GV   P+  T+ A+ L        G +  ++ LLG+ + 
Sbjct: 73  TGCWKVLHSCSEDLEVFRHWLGVVPSPLIDTQRATALLGKGF-GLGYRALIELLLGVELD 131

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           K +  SDW    LSD Q  YAA DV+ L        +     GR +     
Sbjct: 132 KGETRSDWLKRPLSDSQCHYAALDVLKLVPAWKILKDLALSQGRMEWILDE 182


>gi|88857337|ref|ZP_01131980.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           tunicata D2]
 gi|88820534|gb|EAR30346.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           tunicata D2]
          Length = 375

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 73/187 (39%), Gaps = 5/187 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +     A      +A+DTE +        + ++Q+  G     I        +    
Sbjct: 9   QSQLDEFLQAISTQSVLAIDTEFMRRRTLYPEIALIQVFDGQHLGLIDP--CCDLDLSRF 66

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             ++ D    K+ H    D+ V     G    P+F T+ A  L     N  G    ++  
Sbjct: 67  WQIMSDAAILKVLHSPSEDVEVFLKH-GCIPSPIFDTQFALSLLGG-ANCLGFAIMVERF 124

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           LG+ I K++  ++W    LS  QL+YAA DV +L     +   +++ LG  ++     + 
Sbjct: 125 LGLTIDKSESRTNWLQRPLSASQLEYAAGDVFYLLPCFEKIRAEIEALGFMNIVIGEGDL 184

Query: 187 LMDRAEL 193
           L+ +   
Sbjct: 185 LVTKRAY 191


>gi|300784546|ref|YP_003764837.1| ribonuclease D [Amycolatopsis mediterranei U32]
 gi|299794060|gb|ADJ44435.1| ribonuclease D [Amycolatopsis mediterranei U32]
          Length = 407

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 9/189 (4%)

Query: 2   TTIRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58
             +     ++   CA  A    A+AVDTE         +  +VQL   G GTV I  IA 
Sbjct: 20  PPVITDAAELAEACAKLAAGTGAVAVDTERASGYRYFPKAYLVQLRREGAGTVLIDPIAL 79

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
             + AP L  +L     E + H    D+  L    G+    +F T++A RL      +  
Sbjct: 80  DGELAP-LREVL--NSLEWVLHAASQDLPCL-AELGLHPAALFDTELAGRLAGY--ERVA 133

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L   ++ LLG  + K   ++DWS   L  + L YAA DV  L  LR +   +L   G+ +
Sbjct: 134 LGTLVELLLGYTLEKGHSAADWSKRPLPVDWLNYAALDVELLIQLREKLEAELGAQGKLE 193

Query: 179 LATSCCNFL 187
            A     F+
Sbjct: 194 WARQEFEFV 202


>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
 gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
          Length = 374

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 4/174 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
                   AVD E   +   ++++C++Q +  D TV +  +AAG  +   L  +L D   
Sbjct: 19  DLETCAVFAVDLEADSMHSYQEKVCLLQFTYHDTTVLLDPLAAG--DLAPLKPVLADSSI 76

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KIFH   +DI  L   F + +R +F T IAS+       + GL D L +   + + K  
Sbjct: 77  RKIFHAADYDIRCLARDFDIEIRGLFDTMIASQFLGE--EKVGLADVLGKYFDVTLDKRF 134

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           Q +DWS   LS E   YAA D  HL  L       L+   R          L  
Sbjct: 135 QRADWSKRPLSPEMCHYAAEDTRHLEKLVAILEPALKEKDRLWWVEEEFRLLEQ 188


>gi|256822615|ref|YP_003146578.1| ribonuclease D [Kangiella koreensis DSM 16069]
 gi|256796154|gb|ACV26810.1| ribonuclease D [Kangiella koreensis DSM 16069]
          Length = 384

 Score =  184 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 3/165 (1%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
            +  +AVDTE         RL ++Q+  G     I  +A    +   L  +       K 
Sbjct: 33  ALKELAVDTEFDRTNTYFHRLALIQIYDGKEIYLIDPLAF--DDLSALTELFASTSVVKA 90

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L++ +G     VF T+IA+ L        G  + ++  L + + K    +
Sbjct: 91  LHSCSEDLEALYHQYGFEFNQVFDTQIAASL-DGIGLSVGYGNIVEHFLSVVLDKEHTKT 149

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           DW    LS EQ  YAA DV +L  +  +  + L   G  +     
Sbjct: 150 DWLQRPLSQEQRVYAAQDVQYLMPVYYRLRDSLLEKGLFECVIED 194


>gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
          Length = 388

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 4/170 (2%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
                V AIA+DTE        DR+ ++QLS  D    I  +  G      L  +L D +
Sbjct: 20  AGLNGVRAIALDTEGASFHRFVDRIYLLQLSTADHEAVIDPLPIGTP--TRLGVLLEDPQ 77

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
            E + H   +D+ +L   +G RV  +F T++A++L        GL   L++  GI + K 
Sbjct: 78  VEVVLHDADYDLRLLRQDYGWRVTHLFDTRVAAQLLG--IRAFGLAALLEQFFGIKLDKK 135

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            Q +DWS   L+ + L YAA D  HL  LR +  ++L + GR   A    
Sbjct: 136 HQRADWSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKGRWSWAQEEF 185


>gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
 gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
          Length = 382

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVD E   L   R+++C++Q+S    +  I  +A   K+   L   L +     + H  
Sbjct: 33  VAVDLEMDSLHHYREKVCLIQISTRTESWLIDPLA--LKDLSPLAAPLGNRDILIVMHGA 90

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +DI  L    G+ V  +F T IASRL      + GL   LK   GI ++K  Q +DWS 
Sbjct: 91  DYDIRSLHRDHGIEVTNLFDTMIASRLLG--ITEFGLAALLKARFGIELNKKYQKADWSK 148

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
             LS E   YA +D   L  L     ++L   GR       C  +  
Sbjct: 149 RPLSPEMRAYAVADTADLLRLYDMLRDELLEKGRLAWLEEECRLVCQ 195


>gi|330894750|gb|EGH27411.1| ribonuclease D [Pseudomonas syringae pv. mori str. 301020]
          Length = 377

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQNAWLIDPLLIN--DWQPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRL 172


>gi|330941897|gb|EGH44622.1| ribonuclease D [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 377

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVLHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFTILRARL 172


>gi|257483935|ref|ZP_05637976.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320325216|gb|EFW81283.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327790|gb|EFW83798.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330989388|gb|EGH87491.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331013134|gb|EGH93190.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 377

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWQPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFSILRPRL 172


>gi|71735861|ref|YP_273799.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556414|gb|AAZ35625.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 377

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWQPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFSILRPRL 172


>gi|289628944|ref|ZP_06461898.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651074|ref|ZP_06482417.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298486131|ref|ZP_07004194.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159138|gb|EFI00196.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330868058|gb|EGH02767.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 377

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRL 172


>gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2]
 gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2]
          Length = 381

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 4/170 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +   AIAVD E   +   ++++C++Q S     + +  +A   K+   L  +       
Sbjct: 24  LQKETAIAVDLEADSMFHYQEKVCLLQFSTPSKNILVDPLAV--KDLSPLAPIFKSFGIC 81

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KIFH   +DI  L+  F + V  +F T+IA+R         GL   L+  L I + K  Q
Sbjct: 82  KIFHGADYDIRSLYRDFKIEVNALFDTQIAARFLG--LTDIGLASLLQGKLNITLKKKYQ 139

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
             DWS   L    LQYA  D  HL  L     E+L + GR       C  
Sbjct: 140 KKDWSQRPLPAPMLQYAVHDTCHLIPLAQNLREELVKTGRLPFVEEECQL 189


>gi|330959294|gb|EGH59554.1| ribonuclease D [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 377

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLALHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGKSAWLIDPLLIN--DWRPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRL 172


>gi|261855126|ref|YP_003262409.1| ribonuclease D [Halothiobacillus neapolitanus c2]
 gi|261835595|gb|ACX95362.1| ribonuclease D [Halothiobacillus neapolitanus c2]
          Length = 374

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 4/169 (2%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE +       +LC+VQ++  D    I  +A        L   L       +FH   
Sbjct: 36  TIDTEFMRESTYFPQLCLVQIATPDAIWLIDPLAVP---LAPLWHELNRTSSPLVFHAAE 92

Query: 84  FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143
            D+ +++   G   + +  ++IA+        Q G  + +  LL + + K+Q  ++W+  
Sbjct: 93  QDLELIYLDSGALPQTLRDSQIAAAFL-GLGEQIGYANLVNRLLHVELDKSQSRTNWAQR 151

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            L+ EQ  YAA DV  L ++     E+L    R       C  L D   
Sbjct: 152 PLTAEQQHYAADDVRFLRSMYPLLREQLATKNRLAWFDEECAALSDPQR 200


>gi|330877463|gb|EGH11612.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 307

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAEWQLLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWQPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFSILRPRL 172


>gi|257056403|ref|YP_003134235.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
 gi|256586275|gb|ACU97408.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
          Length = 413

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 7/177 (3%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A    A+AVDTE         +  ++Q+   G GT  I  I       P L  ++  
Sbjct: 41  ERLAEGSGALAVDTERASGYRYWPKAYLIQIRREGAGTFLIDPIPLRDHFTP-LAEVM-- 97

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            + E + H    D+  L    G+    +F T++A RL      +  L   ++ LLG  + 
Sbjct: 98  NQVEWVLHAASQDLPCL-AELGLHPPSLFDTELAGRLAGYQ--RVALGTLVESLLGYQLE 154

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           K   ++DWS   L  + L YAA DV  L  LR +  E+L   G+ + A      +  
Sbjct: 155 KGHSAADWSRRPLPLDWLNYAALDVELLLPLREKLEEELAASGKLEWARQEFEAVRT 211


>gi|237800267|ref|ZP_04588728.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023124|gb|EGI03181.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 377

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 5/166 (3%)

Query: 8   EGDIPAECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           + D  A   A++  +  +A+DTE + +        ++Q+  G     I  +     +   
Sbjct: 10  DDDSLALYCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGKSAWLIDPLLIN--DWRP 67

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E
Sbjct: 68  LSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQE 126

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 127 VLDIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFAILRPRL 172


>gi|331019018|gb|EGH99074.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 377

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWAPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LSD Q+ YAA D VHL  L      +L
Sbjct: 128 LNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRL 172


>gi|330964859|gb|EGH65119.1| ribonuclease D [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 377

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     N   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--NWAPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LSD Q+ YAA D VHL  L      +L
Sbjct: 128 LNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRL 172


>gi|213969693|ref|ZP_03397828.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
 gi|301383544|ref|ZP_07231962.1| ribonuclease D [Pseudomonas syringae pv. tomato Max13]
 gi|302062110|ref|ZP_07253651.1| ribonuclease D [Pseudomonas syringae pv. tomato K40]
 gi|302130100|ref|ZP_07256090.1| ribonuclease D [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213925501|gb|EEB59061.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
          Length = 377

 Score =  182 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWAPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LSD Q+ YAA D VHL  L      +L
Sbjct: 128 LNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRL 172


>gi|28871074|ref|NP_793693.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28854324|gb|AAO57388.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 377

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWAPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LSD Q+ YAA D VHL  L      +L
Sbjct: 128 LNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRL 172


>gi|330975291|gb|EGH75357.1| ribonuclease D [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 377

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFTILRPRL 172


>gi|284046840|ref|YP_003397180.1| ribonuclease D [Conexibacter woesei DSM 14684]
 gi|283951061|gb|ADB53805.1| Ribonuclease D [Conexibacter woesei DSM 14684]
          Length = 396

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 8/178 (4%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT------VDIIRIAAGQKNAPNLVGM 69
            AR    + +DTE +     R  LC+VQ++  D        + +         AP L  +
Sbjct: 21  LARAAGRLGIDTEFMSEGRYRALLCLVQVAVDDADAPNGVRIALFDPFDKLDFAP-LAAV 79

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D + E + H  R D+A++   +   VR VF T++A+     Y  Q G  + L   LG 
Sbjct: 80  LADPEIEIVLHAARQDVAIMRRAWRTDVREVFDTQVAAGFA-GYGAQTGYGNLLGAALGQ 138

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            + K    + W A  L++EQL YAA DV+HL  L     +KL   GR   A   C  +
Sbjct: 139 RVGKTASYTRWDARPLTEEQLSYAAEDVLHLLQLSDALHDKLSAHGRLQWAQEECRRM 196


>gi|302187116|ref|ZP_07263789.1| ribonuclease D [Pseudomonas syringae pv. syringae 642]
          Length = 377

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFTILRPRL 172


>gi|330900086|gb|EGH31505.1| ribonuclease D [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 377

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQITYAAEDAVHLAELFTILRPRL 172


>gi|239946745|ref|ZP_04698498.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921021|gb|EER21045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 281

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+   +    I  ++    +      +L D    KIFH  
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +  F +    VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W  
Sbjct: 81  REDLEIFYNLFKILPSNVFDIQIAANIC-GFGKQLSYNDLCYKLIGITIDKTHQKSNWLK 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199
             ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D     +     W+
Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLDVRNYKVEPKDAWK 199

Query: 200 NVDIFS 205
            +   S
Sbjct: 200 KIKYRS 205


>gi|67459201|ref|YP_246825.1| ribonuclease D [Rickettsia felis URRWXCal2]
 gi|67004734|gb|AAY61660.1| Ribonuclease D [Rickettsia felis URRWXCal2]
          Length = 281

 Score =  181 bits (461), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+   +    I  ++    +      +L D    KIFH  
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W  
Sbjct: 81  REDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL---LGWE 199
             ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D     +     W+
Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLDVRNYKVEPKNAWK 199

Query: 200 NVDIFS 205
            +   S
Sbjct: 200 KIKYRS 205


>gi|294055851|ref|YP_003549509.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
 gi|293615184|gb|ADE55339.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
          Length = 386

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 2/191 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I   E    A   A+   A+ VDTE +        L +VQL   DG  ++I  A   ++ 
Sbjct: 2   ITTTEALREAVRRAQDAGAVGVDTEFVWDRTYYPTLGVVQLGYPDGHCELID-APEIEDW 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  ++ D    KI H  + D+ +L    G   + +F T++ +      ++   L+D L
Sbjct: 61  SPLAELMSDPNVVKILHDAQQDLTILRRVCGSDPKTIFDTQLTAGFI-GLSSTISLRDIL 119

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           K LL + ++K +  SDW A  L++ Q++YA  DV     L  Q  ++   LGR +   + 
Sbjct: 120 KTLLKVRLAKTETQSDWVARPLTEAQIKYAEDDVRDSVRLMEQILKRADALGRREWIENE 179

Query: 184 CNFLMDRAELD 194
             +  D A  +
Sbjct: 180 MTYYEDAAIYE 190


>gi|254428623|ref|ZP_05042330.1| ribonuclease D [Alcanivorax sp. DG881]
 gi|196194792|gb|EDX89751.1| ribonuclease D [Alcanivorax sp. DG881]
          Length = 375

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            + +DTE +       +L +VQ+  G+    I        + P L  +   ++   + H 
Sbjct: 42  PLYLDTEFMRERTFWPQLALVQVHDGEQIRLIDTTRV---DGPTLSPVF--QQHTLVMHA 96

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  +    G     +  T+IA+ L+     Q G +  ++ LLG+++ K    ++W 
Sbjct: 97  CSEDLEAIATFTGQYPAAIEDTQIAAALS-GEDMQWGYQKVVQMLLGVDLPKGATRTNWL 155

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
              LSDEQL YA  DV +L  +     E+L +LGR       C  L+++A 
Sbjct: 156 KRPLSDEQLHYAEDDVKYLPEVAAILAERLDKLGRRAWWQEECERLLNQAR 206


>gi|330974089|gb|EGH74155.1| ribonuclease D [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 377

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTILRPRL 172


>gi|66044808|ref|YP_234649.1| ribonuclease D [Pseudomonas syringae pv. syringae B728a]
 gi|63255515|gb|AAY36611.1| Ribonuclease D [Pseudomonas syringae pv. syringae B728a]
          Length = 377

 Score =  180 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 128 LDIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTILRPRL 172


>gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.]
          Length = 382

 Score =  180 bits (459), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 4/188 (2%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T I    G   A    +    I  D E   +    +++C++Q++  +    I  I    K
Sbjct: 10  TIIETLSGLKDALVNIKEEKKIGFDLEADSMHHFPEKVCLLQVATKNCIFVIDTIK--LK 67

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +  D +  KIFH   +D+  LF  F + +  +F +++ASR       + GL+ 
Sbjct: 68  ELSLLKPIFADNEITKIFHGADYDVRSLFRDFNIEINNLFDSELASRFLG--VKETGLEA 125

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++    + + K     DWS   L D+ L YAA DV +L  L     ++L  +GR     
Sbjct: 126 VIRHRFNVYLEKKFTKRDWSKRPLIDDMLHYAADDVRYLVPLYEILEKELNDIGRLFWVK 185

Query: 182 SCCNFLMD 189
             C+ L  
Sbjct: 186 EECDILCS 193


>gi|317508452|ref|ZP_07966122.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974]
 gi|316253299|gb|EFV12699.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974]
          Length = 470

 Score =  180 bits (458), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 7/180 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70
            A   A     +AVD E         +  +VQL   G GTV +  I   +   P    + 
Sbjct: 64  AARRLAGGRGPLAVDAERASGFRYWPKAYLVQLRRQGSGTVLLDPIDHPEALEPLAEAI- 122

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                E + H    D+  L    G+R   +F T++  R+      + GL   ++ LLG+ 
Sbjct: 123 --NGLEWVLHAADQDLPCL-AELGLRPAKLFDTELGGRIAG--FERVGLAALVETLLGVG 177

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++K   ++DWS   L  E L YAA DV  L  +R    E L   G+++ A     ++  R
Sbjct: 178 LAKGHGAADWSQRPLPPEWLNYAALDVELLLPMREALLEALAEQGKTEWALEEFEYVRMR 237


>gi|85712692|ref|ZP_01043738.1| Ribonuclease D [Idiomarina baltica OS145]
 gi|85693542|gb|EAQ31494.1| Ribonuclease D [Idiomarina baltica OS145]
          Length = 367

 Score =  180 bits (458), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR   + A+DTE +        L +VQL+    T  I  +     +   L  ++ D    
Sbjct: 9   ARLAGSFAIDTEFVRRKTYFANLGLVQLNVDGETFIIDPL--IDIDLTALWQLIADPDVV 66

Query: 77  KIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL-GINISKA 134
            + H G  DI + ++   G + R VF T+IA+       +  G    +++L  G+ + K+
Sbjct: 67  TVLHAGGEDIELFYHQSNGQKPRAVFDTQIAAGFI-GMGSSLGYASLVEQLFDGVTLDKS 125

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           Q  +DW    LS+EQL YAA+DV +L+++     E++ +   +D+       
Sbjct: 126 QSRTDWLKRPLSEEQLTYAAADVSYLNSMYPWLVEQVAQAHVADIVVEESQL 177


>gi|157964642|ref|YP_001499466.1| ribonuclease D [Rickettsia massiliae MTU5]
 gi|157844418|gb|ABV84919.1| Ribonuclease D [Rickettsia massiliae MTU5]
          Length = 284

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+   +    I  ++    +      +L D    KIFH  
Sbjct: 26  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 83

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W  
Sbjct: 84  REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 142

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199
             ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D     +     W+
Sbjct: 143 RPITSDMLNYAMLDVEYLYKIYKELNNIIIRNNLTNKYQTTLSSLLDVRNYKVESKDAWK 202

Query: 200 NVDIFS 205
            +   S
Sbjct: 203 KIKYRS 208


>gi|238650864|ref|YP_002916719.1| ribonuclease D [Rickettsia peacockii str. Rustic]
 gi|238624962|gb|ACR47668.1| ribonuclease D [Rickettsia peacockii str. Rustic]
          Length = 281

 Score =  179 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 6/183 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+   +    I  ++    +      +L D    KIFH  
Sbjct: 23  LSIDTEFERRYTYYTQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W  
Sbjct: 81  REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199
             ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D     +     W+
Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIVRNNLTNKYQTTLSALLDVRNYKVEPKDAWK 199

Query: 200 NVD 202
            + 
Sbjct: 200 KIK 202


>gi|330879592|gb|EGH13741.1| ribonuclease D [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 377

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     N   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIEPLLIN--NWAPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L I++ K +  SDW    LSD Q+ YAA D VHL  L      +L
Sbjct: 128 LNIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAELFAILRPRL 172


>gi|157825886|ref|YP_001493606.1| ribonuclease D [Rickettsia akari str. Hartford]
 gi|157799844|gb|ABV75098.1| Ribonuclease D [Rickettsia akari str. Hartford]
          Length = 281

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+   +    I  ++    +      +L D    KIFH  
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNVFNKLLEDNNITKIFHAP 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W  
Sbjct: 81  REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDICYKLIGITIDKTHQKSNWLK 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199
             ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D     +     W+
Sbjct: 140 RPITSDMLNYAMLDVKYLYKIYQELNNIIIRNNLTNKYKTTLSSLLDVINYKVEPKDAWK 199

Query: 200 NVDIFS 205
            +   S
Sbjct: 200 KIKYRS 205


>gi|319786955|ref|YP_004146430.1| ribonuclease D [Pseudoxanthomonas suwonensis 11-1]
 gi|317465467|gb|ADV27199.1| ribonuclease D [Pseudoxanthomonas suwonensis 11-1]
          Length = 364

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 6/188 (3%)

Query: 10  DIPAECAARYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           D PAE   R   A   I +DTE +       RL +VQ++ G   + +  +  G   A  +
Sbjct: 8   DQPAELLRRLQSAPSRIGLDTEFIRERTFWPRLALVQMAVGGDVLLVDALVPGMPEA--I 65

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
              L      K+ H    D+       G   RP++ T++A+ L          +  + ++
Sbjct: 66  AAWLDAPHVLKVMHSASEDLVTFRCACGTVPRPMYDTQVAAALAGFGAGMG-YQRLVAQV 124

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
            G  ++K +  SDW    LS  QL+YAA DV HL A+      +L+ LGR          
Sbjct: 125 TGTTLAKGETRSDWMRRPLSPAQLEYAADDVRHLDAVYQATLARLRELGREAWLDEDMAR 184

Query: 187 LMDRAELD 194
            +++A  D
Sbjct: 185 TVEQASHD 192


>gi|229586838|ref|YP_002845339.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|228021888|gb|ACP53596.1| Ribonuclease D [Rickettsia africae ESF-5]
          Length = 281

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 6/183 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+   +    I  ++    +      +L D    KIFH  
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W  
Sbjct: 81  REDLEIFYNLFNTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199
             ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D     +     W+
Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKEINNIIVRNNLTNKYQTTLSALLDVRNYKVEPKDAWK 199

Query: 200 NVD 202
            + 
Sbjct: 200 KIK 202


>gi|34581576|ref|ZP_00143056.1| ribonuclease D [Rickettsia sibirica 246]
 gi|28262961|gb|EAA26465.1| ribonuclease D [Rickettsia sibirica 246]
          Length = 281

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 6/183 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+   +    I  ++    +      +L D    KIFH  
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W  
Sbjct: 81  REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199
             ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D     +     W+
Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKEINNIIVRNNLTNKYQTTLSALLDVRNYKVEPKDAWK 199

Query: 200 NVD 202
            + 
Sbjct: 200 KIK 202


>gi|92113585|ref|YP_573513.1| ribonuclease D [Chromohalobacter salexigens DSM 3043]
 gi|91796675|gb|ABE58814.1| ribonuclease D [Chromohalobacter salexigens DSM 3043]
          Length = 375

 Score =  178 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 77/188 (40%), Gaps = 3/188 (1%)

Query: 11  IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   C A    + +AVDTE            +VQL  G   V ++   A    +P L  +
Sbjct: 16  LDDACDALAGAEWLAVDTEFHRESTFFPIAALVQLYAGGDAVYMVDPRA-VSASPALQAL 74

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L      K+ H    D+ VL     V V P+  T++A  L  T     G +  ++   G 
Sbjct: 75  LSVSGPLKLLHASGEDLEVLESWAEVGVAPIADTQVAQSLLGTQA-SLGYQRLVEHWTGD 133

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K +  SDW    LSD QLQYAA DVV+L  +     + L R GR       C  L D
Sbjct: 134 VLPKEETRSDWLQRPLSDAQLQYAALDVVYLPRIWEAQRDALMREGRLAWLEEECARLCD 193

Query: 190 RAELDLLG 197
               D+  
Sbjct: 194 ANRRDVNA 201


>gi|326384419|ref|ZP_08206099.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
 gi|326196764|gb|EGD53958.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
          Length = 407

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 7/180 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGML 70
            AE   R    IAVDTE         R  +VQL   G G+  I  I+     +P +  + 
Sbjct: 39  AAELIGRGTGPIAVDTERASGYRYSQRAYLVQLKRAGSGSFLIDPISHPDALSPLIDAL- 97

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
             +  E I H    D+  L    G     +F T++A RL      +  L   + E L + 
Sbjct: 98  --DGPEWILHAADQDLPCL-RELGFTPTTLFDTELAGRLLN--IPKVNLAAMVAEFLHLG 152

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++K   ++DWS   L D+ L YAA DV  L  LR    + L   GR + A     +++ R
Sbjct: 153 LAKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAVADALSEAGRDEWAAQEFAYVLAR 212


>gi|269468831|gb|EEZ80435.1| ribonuclease D [uncultured SUP05 cluster bacterium]
          Length = 345

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE   +      LC+VQ++    T D I +      +P    +  D     I H  
Sbjct: 21  LAIDTEFKRVNTYYPVLCLVQIATKKNT-DCIDVLTLDDLSPLFDKLYQD-DCLWIVHSA 78

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI  L Y      + +F T+IA+ L   Y  Q   +   + L  +++ KA    DW+ 
Sbjct: 79  RQDIEALHYLSKQLPKQLFDTQIAASLVN-YPAQISYQALTESLQNVHLEKAYTRLDWTI 137

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL--DLL-GWE 199
             L DE ++YA  DV +L     Q   +L+   +S         L+D      D+   W+
Sbjct: 138 RPLPDEAIEYALDDVRYLLKNYRQLKTQLEVEEKSTWIEEEGKSLLDINLYNPDIKDAWQ 197

Query: 200 NVDIFS 205
            V  FS
Sbjct: 198 RVKGFS 203


>gi|15892619|ref|NP_360333.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|15619787|gb|AAL03234.1| ribonuclease D [Rickettsia conorii str. Malish 7]
          Length = 281

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 6/183 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+   +    I  ++    +      +L D    KIFH  
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S+W  
Sbjct: 81  REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSNWLK 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199
             ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D     +     W+
Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKEVNNIIVRNNLTNKYQTTLSALLDVRNYKVEPKDAWK 199

Query: 200 NVD 202
            + 
Sbjct: 200 KIK 202


>gi|157803677|ref|YP_001492226.1| ribonuclease D [Rickettsia canadensis str. McKiel]
 gi|157784940|gb|ABV73441.1| Ribonuclease D [Rickettsia canadensis str. McKiel]
          Length = 284

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 6/186 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+   +    I  ++    N      +L D    KIFH  
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAENYCGIIDALSNVDLN--IFNKLLADNNITKIFHAP 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +  F      VF  +IA+ +   +  Q    D   +L GI I K  Q S+W  
Sbjct: 81  REDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLFGIAIDKTHQKSNWLK 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199
             ++ + L YA  DV +L+ +  +    + R    +   +    L+D     +     W+
Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIIRSNLVNKYQTTLGSLLDVRNYKVEPKDAWK 199

Query: 200 NVDIFS 205
            +   S
Sbjct: 200 KIKYRS 205


>gi|302554895|ref|ZP_07307237.1| ribonuclease D [Streptomyces viridochromogenes DSM 40736]
 gi|302472513|gb|EFL35606.1| ribonuclease D [Streptomyces viridochromogenes DSM 40736]
          Length = 474

 Score =  177 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 8/172 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G GT  I  +A    +   L   L     
Sbjct: 60  AAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC--PDLSALGEALS--GV 115

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 116 EWVLHAATQDLPCL-REIGMVPTRLFDTELAGRLAG--FPRVGLGAMVEGVLGFVLEKGH 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ D A    + +
Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWARQEFDAI 224


>gi|51246649|ref|YP_066533.1| ribonuclease D [Desulfotalea psychrophila LSv54]
 gi|50877686|emb|CAG37526.1| related to ribonuclease D [Desulfotalea psychrophila LSv54]
          Length = 374

 Score =  177 bits (451), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 3/192 (1%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            I     D+      A  +DA+ +DTE +       +L ++Q++  D     I   + + 
Sbjct: 5   NIISTTEDLKKIVNKALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEECYAIDPLSIKD 64

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            +P L  +L D    KI H    D+ ++    G   + +F T++A+    + +    L  
Sbjct: 65  LSP-LGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFDTRLAAGFAGSIST-ISLLQ 122

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            + E L   + K++  ++W    L+++QL Y+ +DV +L A R+    K+          
Sbjct: 123 LVSEQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYLRATRVILLSKIIGPKIKSWLQ 182

Query: 182 SCCNFLMDRAEL 193
              N L + A  
Sbjct: 183 EELNLLNNPANY 194


>gi|262166840|ref|ZP_06034571.1| ribonuclease D [Vibrio cholerae RC27]
 gi|262024728|gb|EEY43402.1| ribonuclease D [Vibrio cholerae RC27]
          Length = 284

 Score =  177 bits (450), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 6/186 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+   +    I  ++    N      +L D    KIFH  
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAENYCGIIDALSNVDLN--IFNKLLADNNITKIFHAP 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +  F      VF  +IA+ +   +  Q    D   +L GI I K  Q S+W  
Sbjct: 81  REDLEIFYNLFKTLPSNVFDIQIAANIC-GFGKQLSYDDLCYKLFGIAIDKTHQKSNWLK 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199
             ++ + L YA  DV +L+ +  +    + R    +   +    L+D     +     W+
Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIIRSNLVNKYQTTLGSLLDVRNYKVEPKDAWK 199

Query: 200 NVDIFS 205
            +   S
Sbjct: 200 KIKYRS 205


>gi|157828635|ref|YP_001494877.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933351|ref|YP_001650140.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
 gi|157801116|gb|ABV76369.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908438|gb|ABY72734.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
          Length = 281

 Score =  177 bits (450), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 6/183 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +++DTE         +L I+Q+   +    I  ++    +      +L D    KIFH  
Sbjct: 23  LSIDTEFERRYTYYAQLSIIQVKAEEYCGIIDALS--NLDLNIFNKLLADNNITKIFHAP 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R D+ + +  F      VF  +IA+ +   +  Q    D   +L+GI I K  Q S W  
Sbjct: 81  REDLEIFYNLFKTLPANVFDIQIAANIC-GFGKQLSYDDLCYKLIGITIDKTHQKSHWLK 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---GWE 199
             ++ + L YA  DV +L+ +  +    + R   ++   +  + L+D     +     W+
Sbjct: 140 RPITSDMLNYAMLDVEYLYKIYKELNNIIVRNNLTNKYQTTLSALLDVRNYKVEPKDAWK 199

Query: 200 NVD 202
            + 
Sbjct: 200 KIK 202


>gi|91205505|ref|YP_537860.1| ribonuclease D [Rickettsia bellii RML369-C]
 gi|157827220|ref|YP_001496284.1| ribonuclease D [Rickettsia bellii OSU 85-389]
 gi|91069049|gb|ABE04771.1| Ribonuclease D [Rickettsia bellii RML369-C]
 gi|157802524|gb|ABV79247.1| Ribonuclease D [Rickettsia bellii OSU 85-389]
          Length = 286

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 6/185 (3%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +++DTE         +L I+Q+     ++ I  I     +      +L+D    KIFH
Sbjct: 21  KWLSIDTEFERRYTYYAKLSIIQVKAEGCSIIIDAI--NNLDLNVFNKLLIDNNIIKIFH 78

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R D  + +  F      +F  ++A+ +     +Q    D   +L  INI K  Q S+W
Sbjct: 79  APREDFEIFYNLFKTLPSNIFDVQVAANVC-GLGSQLSYDDICYKLFKINIDKTHQKSNW 137

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL---G 197
               ++++ L YA  DV +L  +  Q  + +     ++   S   FL +    ++     
Sbjct: 138 LKRPITEDMLNYAFLDVEYLDKIYKQLNKIILDNNLTNQYQSMLQFLFNIKNYEVKPEDA 197

Query: 198 WENVD 202
           W+ V 
Sbjct: 198 WKKVK 202


>gi|307544648|ref|YP_003897127.1| ribonuclease D [Halomonas elongata DSM 2581]
 gi|307216672|emb|CBV41942.1| ribonuclease D [Halomonas elongata DSM 2581]
          Length = 395

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 5/185 (2%)

Query: 11  IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   CA     D IA+DTE            +VQ   G     +        +A     +
Sbjct: 34  LDEACAEVAEADVIALDTEFFREKTFHPVPALVQFCVGGAAYLVDPTVVACTDA--FRRL 91

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L  E   K+ H    D+ V  +  GV V P+  T+IA  L        G +  ++  +G 
Sbjct: 92  LG-EGPVKLLHASSEDLEVFLHWAGVTVSPLVDTQIAQALL-GEVPAMGYQKLVEFWVGE 149

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K +  S+W    LS+ Q  YAA DV++L  +     + L+R GR       C  L+D
Sbjct: 150 TLPKDETRSNWLERPLSETQTTYAALDVIYLLEVWQVQRDALERYGRLGWLEEECRKLVD 209

Query: 190 RAELD 194
           +A  D
Sbjct: 210 QAARD 214


>gi|296270237|ref|YP_003652869.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
 gi|296093024|gb|ADG88976.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
          Length = 403

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 8/177 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           +  AR    +A+D E         R  +VQL   G GT  I  +A    +   L  +L D
Sbjct: 31  DAFARGTGPVAMDAERASGYRYSGRAYLVQLRREGAGTALIDPVAC--PDLGELDRVLAD 88

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   + H    D+  L    G R R +F T++A+RL      + GL   ++ +LG+ + 
Sbjct: 89  AEI--VLHAATQDLPCL-AELGFRPRRLFDTELAARLLGY--ERVGLATMVEVVLGLRLE 143

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           K   ++DWS   L ++ L+YAA DV  L  LR    E+L   G+ + A      ++ 
Sbjct: 144 KGHSAADWSRRPLPEDWLRYAALDVEVLVELRDALYEQLVESGKLEWALEEFAAILS 200


>gi|330466515|ref|YP_004404258.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
 gi|328809486|gb|AEB43658.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
          Length = 438

 Score =  176 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 13  AECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           AE  AR+      +A+D E         R  +VQL   G GT  I  +     +   L  
Sbjct: 63  AEVVARFAAGSGPVALDAERASGYRYSQRAYLVQLRRSGAGTALIDPLP--LPDLSALDA 120

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++ D   E + H    D+  L    G+R R +F T++A+RL      + GL    ++LLG
Sbjct: 121 VIADT--EWVLHAANQDLPCL-AELGLRPRRLFDTELAARLAG--FERVGLAALTEQLLG 175

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            ++ K   ++DWS+  L +  L YAA DV  L  LR     +L R G+S  A      L+
Sbjct: 176 YSLEKHHSAADWSSRPLPESWLTYAALDVELLTDLRDALDAELTRQGKSQWAEEEFAALV 235

Query: 189 D 189
            
Sbjct: 236 Q 236


>gi|254821715|ref|ZP_05226716.1| ribonuclease D [Mycobacterium intracellulare ATCC 13950]
          Length = 430

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 85/194 (43%), Gaps = 5/194 (2%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61
           ++ V+E +  AE   R     AVD E        +R  ++Q+   G GTV I  ++ G+ 
Sbjct: 35  SVSVYEIEAAAERLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGSGTVLIDPVSHGRD 94

Query: 62  NAPNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
               L  +       E I H    D+  L    G+R   ++ T++A RL      +  L 
Sbjct: 95  PLEALRPVAEVLGTDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FERVNLA 151

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++ LLG  ++K   ++DWS   L  E L YAA DV  L  LR    E L   G++D A
Sbjct: 152 TMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIAEVLAGQGKTDWA 211

Query: 181 TSCCNFLMDRAELD 194
               ++L D    D
Sbjct: 212 AQEFDYLRDTGSKD 225


>gi|15604326|ref|NP_220842.1| ribonuclease D (RND) [Rickettsia prowazekii str. Madrid E]
 gi|3861018|emb|CAA14918.1| RIBONUCLEASE D (rnd) [Rickettsia prowazekii]
 gi|292572078|gb|ADE29993.1| Ribonuclease D [Rickettsia prowazekii Rp22]
          Length = 281

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 76/188 (40%), Gaps = 6/188 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
                ++++DTE         +L I+Q+        I  ++    +      +L+D    
Sbjct: 17  LANHTSLSIDTEFERRYTYYAQLSIIQVKAEGYCGIIDTLS--NLDLNIFNKLLIDNNIT 74

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KIFH  R D+ + +  F      +F  +IA+ +   +  Q    +   +L+GI I K  Q
Sbjct: 75  KIFHAPREDLEIFYNLFKTLPSNIFDIQIAASIC-GFGQQLSYDNLCYKLIGITIDKTHQ 133

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
            S+W    ++++ L YA  DV +L+ +  +    +     +       + L+D     + 
Sbjct: 134 KSNWLKRPITNDMLNYAILDVEYLYKIYKELNNIIISNNLTHKYQHTLSALLDVRNYKVE 193

Query: 197 ---GWENV 201
               W+ +
Sbjct: 194 LKDAWKKI 201


>gi|332533384|ref|ZP_08409249.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037093|gb|EGI73550.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
          Length = 304

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 3/158 (1%)

Query: 30  LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL 89
           +        + ++Q+  G+    I  +A  + +  +   +L D    K+ H    DI V 
Sbjct: 1   MRRRTLYPEVALIQVFDGEHLALIDPLA--ELSLFDFWEILKDPSVLKVLHSPSEDIEVF 58

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
               G    P+F T+ A +L     N  G    +KEL GI I K++  ++W    L+ +Q
Sbjct: 59  QKYAGFVPSPLFDTQFALQLL-GEGNCMGFALMVKELQGIEIDKSESRTNWLQRPLTKKQ 117

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           L YAA+D  +L        E++   G  D+  +    +
Sbjct: 118 LDYAAADTFYLLPCFELIIERINAAGFFDIVINESELI 155


>gi|51473650|ref|YP_067407.1| ribonuclease D [Rickettsia typhi str. Wilmington]
 gi|51459962|gb|AAU03925.1| ribonuclease D [Rickettsia typhi str. Wilmington]
          Length = 281

 Score =  175 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 4/172 (2%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           +   C    +  ++++DTE         +L I+Q+        I  ++    +      +
Sbjct: 10  LEEFCDRLAHHKSLSIDTEFERRYTYYAQLSIIQVKAEGYCGIIDTLS--NLDLNIFNKL 67

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L+D    KIFH  R D+ + +  F      +F  +IA+ +   +  Q    +   +L+GI
Sbjct: 68  LIDNNITKIFHAPREDLEIFYNLFKTLPSNIFDIQIAASIC-GFGQQLSYDNLCYKLIGI 126

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            I K  Q S+W    ++ + L YA  DV +L+ +  +    +     ++   
Sbjct: 127 TIDKTHQKSNWLKRPITSDMLNYAILDVEYLYKIYKELNNIIISNNLTNKYQ 178


>gi|325107025|ref|YP_004268093.1| ribonuclease D [Planctomyces brasiliensis DSM 5305]
 gi|324967293|gb|ADY58071.1| Ribonuclease D [Planctomyces brasiliensis DSM 5305]
          Length = 401

 Score =  175 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 11/198 (5%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+     A     +A DTE +     R RLC++Q    +  V +        +      
Sbjct: 13  EDLCDRLHA--SGQVAFDTEFVSEFTFRPRLCLLQFGTSEEKVAVDPFQ--LTDLTPWWE 68

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELL 127
           ++ DE+ E I H GR +I   ++  G + + +   +I   L  R +   H     +++++
Sbjct: 69  IMADEQTEVIIHGGREEILFCWHAIGKKPQNLIDVQIVQGLLSRGFPLSHS--ALVQKVV 126

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC--- 184
              +   +  +DWS   L+ +Q+ YA  DVVHL  +  +   +L++  R+  A   C   
Sbjct: 127 RKKVHGKETRTDWSKRPLTTKQINYAIEDVVHLIDIAEKQKVRLKKTKRTTWADEECRQF 186

Query: 185 -NFLMDRAELDLLGWENV 201
            + L++  +L    W+ +
Sbjct: 187 VDGLVETQKLRGEAWQRL 204


>gi|110834629|ref|YP_693488.1| ribonuclease D [Alcanivorax borkumensis SK2]
 gi|110647740|emb|CAL17216.1| ribonuclease D [Alcanivorax borkumensis SK2]
          Length = 357

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 9/191 (4%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            +      + +DTE +       +L +VQ+  G   V I  I   + + P L+ +  +  
Sbjct: 17  ASLAAGSRLYLDTEFMRERTFWPQLALVQVHDG---VRIRLIDTTEVDGPTLLPVFQNHT 73

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
              + H    D+  +    G     +  T+IA+ L+     Q G +  ++ LLG+++ K 
Sbjct: 74  L--VMHACSEDLEAIATFTGQYPAAIEDTQIAAALS-GEDMQWGYQKVVQMLLGVDLPKG 130

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
              ++W    LSDEQL YA  DV +L  +     E+L  LGR       C  L+ +A   
Sbjct: 131 ATRTNWLKRPLSDEQLHYAEDDVKYLPEVAGILAERLDGLGRRAWWEEECARLLKQARSQ 190

Query: 195 LL---GWENVD 202
           +L    W NV 
Sbjct: 191 VLPQDAWRNVK 201


>gi|149196457|ref|ZP_01873512.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155]
 gi|149140718|gb|EDM29116.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155]
          Length = 372

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 2/161 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IA+DTE +          ++Q+    G + +I +         L  +L      KI H  
Sbjct: 23  IALDTEFVWTKTFHPIPGLLQIKSA-GEIHLIDLLIENFPKEILKELLESRDVCKILHSP 81

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ +         + +F T++A   T     Q  L     E++ I ISK QQ SDW+ 
Sbjct: 82  DQDLKLFKLFCDAEAKNIFDTQLAYAFTGA-PKQVSLAKLCLEMMDIEISKTQQVSDWTK 140

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             L D QL YAA DV +L  +     EKL+  GR D     
Sbjct: 141 RPLKDSQLNYAAEDVRYLIEITETLREKLKENGRYDWFLEE 181


>gi|29828773|ref|NP_823407.1| ribonuclease D [Streptomyces avermitilis MA-4680]
 gi|29605878|dbj|BAC69942.1| putative ribonuclease D [Streptomyces avermitilis MA-4680]
          Length = 426

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 10/189 (5%)

Query: 2   TTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58
             +   +  +    AA       +AVD E         R  +VQL   G GT  I  +A 
Sbjct: 39  PPVIADDASLAEVIAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC 98

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              +   L   +     E + H    D+  L    G+    +F T++A RL      + G
Sbjct: 99  --PDLSGLGEAIS--GVEWVLHAATQDLPCL-REIGMVPTRLFDTELAGRLAG--FPRVG 151

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L   ++ +LG  + K   + DWS   L +  L+YAA DV  L  LR    ++L R G+ +
Sbjct: 152 LGAMVESVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLE 211

Query: 179 LATSCCNFL 187
            A    + +
Sbjct: 212 WAQQEFDAI 220


>gi|298526151|ref|ZP_07013560.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|298495945|gb|EFI31239.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A]
          Length = 375

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62
           + V E    AE   R     AVD E         R  ++Q+     GTV I  ++ G   
Sbjct: 35  VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 94

Query: 63  APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
              L  +       E I H    D+  L    G+R   ++ T++A RL     ++  L  
Sbjct: 95  LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 151

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ LLG+ ++K   ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 152 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 211

Query: 182 SCCNFL 187
                L
Sbjct: 212 QEFEHL 217


>gi|296171911|ref|ZP_06852975.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295893910|gb|EFG73681.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 430

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 7/203 (3%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61
           ++ V E +  AE   R     AVD E        +R  ++Q+   G GTV I  ++ G  
Sbjct: 35  SVTVGEIEAAAELLGRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGAD 94

Query: 62  NAPNLVGMLV--DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
               L  +    DE  E I H    D+  L    G++   ++ T++A RL      +  L
Sbjct: 95  PLEALRPVAEVLDED-EWILHSADQDLPCL-AEVGLQPPALYDTELAGRLAG--FERVNL 150

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ LLG  ++K   ++DWS   L +E L YAA DV  L  LR    + L + G++  
Sbjct: 151 ATMVERLLGSGLAKGHGAADWSKRPLPEEWLNYAALDVELLIELRGAIADVLAQQGKTGW 210

Query: 180 ATSCCNFLMDRAELDLLGWENVD 202
           A    ++L      D       D
Sbjct: 211 AAEEFDYLRQVGSRDPSAAARPD 233


>gi|302557678|ref|ZP_07310020.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
 gi|302475296|gb|EFL38389.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
          Length = 430

 Score =  174 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 8/170 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E         R  +VQL   G GT  I  +A    +  +L   L     E 
Sbjct: 62  GSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC--PDLSSLGEALS--GVEW 117

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   +
Sbjct: 118 VLHAATQDLPCL-REIGMVPSRLFDTELAGRLAG--FPRVGLGAMVENVLGFVLEKGHSA 174

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            DWS   L +  L+YAA DV  L  LR    ++L R G+ D A    + +
Sbjct: 175 VDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWARQEFDAI 224


>gi|118618645|ref|YP_906977.1| hypothetical protein MUL_3315 [Mycobacterium ulcerans Agy99]
 gi|183982048|ref|YP_001850339.1| hypothetical protein MMAR_2035 [Mycobacterium marinum M]
 gi|118570755|gb|ABL05506.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
 gi|183175374|gb|ACC40484.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 435

 Score =  174 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 9/191 (4%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61
           ++   + +  A    R     AVD E        +R  ++Q+   G GTV I  ++ G  
Sbjct: 34  SVTAGQIEAAATLLDRGSGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGGD 93

Query: 62  NAP---NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  L  +L   K E I H    D+  L    G+R   ++ T++A RL     ++  
Sbjct: 94  PLTVLQPLAEVLA--KDEWILHSADQDLPCL-AEVGMRPSALYDTELAGRLAGY--DRVN 148

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L   ++ LLG+ + K   ++DWS   L  + L YAA DV  L  LR   +  L   G+SD
Sbjct: 149 LATMVERLLGMGLVKGHGAADWSKRPLPSDWLNYAALDVELLIELRSAISGVLAEQGKSD 208

Query: 179 LATSCCNFLMD 189
            A     +L  
Sbjct: 209 WAAQEFEYLRT 219


>gi|297191335|ref|ZP_06908733.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720654|gb|EDY64562.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486]
          Length = 428

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 6   VHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61
           V + D  AE  A +      +AVD E         R  +VQL   G GT  +  +  G  
Sbjct: 45  VADEDALAEVIAAFAAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGTALVDPV--GCP 102

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +   L   L D   E I H    D+  L    G+    +F T++A RL      + GL  
Sbjct: 103 DLSALGDALADT--EWILHAATQDLPCL-REIGMVPARIFDTELAGRL--GGFPRVGLGA 157

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ +LG  + K   + DWS   L +  L+YAA DV  L  LR    ++L R G+ D A 
Sbjct: 158 MVESVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWAH 217

Query: 182 SCCNFL 187
              + +
Sbjct: 218 QEFDAI 223


>gi|320103484|ref|YP_004179075.1| ribonuclease D [Isosphaera pallida ATCC 43644]
 gi|319750766|gb|ADV62526.1| ribonuclease D [Isosphaera pallida ATCC 43644]
          Length = 396

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 10/185 (5%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           D+      R       DTE +        LC++Q++     V I  +A    +       
Sbjct: 18  DLADHL--RAEGRFGFDTEFVAEESYEPILCLIQVATASKLVVIDALAFS--DLSPFWDA 73

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           ++D K E + H G  D+ +     G     VF  ++A+  T   +    L +  +E+LG+
Sbjct: 74  VLDPKLEVVVHAGGEDLRICKIKTGRLPERVFDVQLAAGFT-GLSYPLSLTNLAREVLGV 132

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            +   +  +DW    LS  Q+ YA  DV HL  L      KL+R+GR D           
Sbjct: 133 QLVGGESRTDWRKRPLSVAQMNYALEDVRHLLDLADALRSKLERMGRLDWVIEE-----T 187

Query: 190 RAELD 194
           RA LD
Sbjct: 188 RAFLD 192


>gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
 gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
          Length = 414

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
             +AVDTE         R  +VQL   G GTV +  IA G +  P +  +   E  E + 
Sbjct: 48  GPVAVDTERASGYRYSQRAYLVQLRREGAGTVLVDPIALGGRLDPLVEAL---EGTEWVL 104

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+    +F T++A RL      +  L   ++ LLG  + K   ++D
Sbjct: 105 HAASQDLPCL-AELGLTPSALFDTELAGRLAG--FERVALGTLVELLLGYRLEKGHGAAD 161

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           WS   L  + L YAA DV  L  LR    E+L++ G+ + A    +
Sbjct: 162 WSRRPLPADWLNYAALDVELLVQLRDVLEEELRQQGKLEWALEEFD 207


>gi|89274974|gb|ABD65937.1| ribonuclease D [Streptomyces fungicidicus]
          Length = 430

 Score =  174 bits (442), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 8/170 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E         R  +VQL   G GT  I  +A    +   L   L     E 
Sbjct: 62  GSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC--PDLSALGEALS--GVEW 117

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   +
Sbjct: 118 VLHAATQDLPCL-REIGMVPSRLFDTELAGRLAG--FPRVGLGAMVENVLGFVLEKGHSA 174

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            DWS   L +  L+YAA DV  L  LR    ++L R G+ D A    + +
Sbjct: 175 VDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWARQEFDAI 224


>gi|238063529|ref|ZP_04608238.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149]
 gi|237885340|gb|EEP74168.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149]
          Length = 442

 Score =  174 bits (441), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 13  AECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           AE  AR+      +A+D E         R  +VQL   G GT  I  +     +  +L  
Sbjct: 63  AEVVARFAAGTGPVALDAERASGYRYSQRAYLVQLRRAGAGTALIDPLP--LPDLSSLDS 120

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
            + D   E + H    D+  L    G+R R +F T++A+RL      + GL    ++LLG
Sbjct: 121 AIADA--EWVLHAASQDLPCL-AEVGLRPRRLFDTELAARLAG--FERVGLAALTEQLLG 175

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            ++ K   ++DWS+  L +  L YAA DV  L  LR     +L R G+S  A      L
Sbjct: 176 FSLEKHHSAADWSSRPLPESWLTYAALDVELLTDLRDALDAELARQGKSAWAAEEFAAL 234


>gi|261414901|ref|YP_003248584.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371357|gb|ACX74102.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302327506|gb|ADL26707.1| putative ribonuclease D [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 386

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 6/178 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
                 D  AVDTE   +     RLC++Q++ G+    I+    G   AP          
Sbjct: 21  ADLELYDMAAVDTEADSMYHYTARLCLIQITIGEHH-YIVDPLCGLDLAPLFKA---RAM 76

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           +  IFH   +D+ +L+ T+G   + +F T +A+++        GL D +KE  G  + K 
Sbjct: 77  QTLIFHGADYDLRLLWQTYGFSPKSIFDTMLAAKILGEQH--LGLADLVKEYFGDELKKE 134

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            Q +DW+   LS +  +YA  D  +LH L     EKLQ+ GR +  T  CN L++ A 
Sbjct: 135 NQRADWTIRPLSLDMCEYAIHDTFYLHELCAILAEKLQQAGRMNWLTEQCNTLIEHAR 192


>gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S]
 gi|311888800|emb|CBH48112.1| putative RNase D [Rhodococcus equi 103S]
          Length = 445

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 7/177 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            AE  A     +AVD E         R  +VQL   G G+  +  I   +   P    + 
Sbjct: 65  AAERLAAGTGPLAVDAERASGFRYSSRAYLVQLRRAGAGSFLLDPIPTAEDLEPLRDAI- 123

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                E + H    D+  L    G+    +F T++A RL      + GL   ++  LG+ 
Sbjct: 124 --NGLEWVLHSADQDLPCL-AELGLEPAALFDTELAGRLAG--FERVGLAAIVERTLGLE 178

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           + K   ++DWS   L D  L YAA DV  L  LR     +L   G+++ A      +
Sbjct: 179 LRKGHGAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGKTEWAAQEFEHV 235


>gi|120403469|ref|YP_953298.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1]
 gi|119956287|gb|ABM13292.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1]
          Length = 426

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 9/182 (4%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLV--- 67
            A+  A      AVD E        +R  +VQ+   G G+V I  ++ G      L    
Sbjct: 46  AADLLASGHGPFAVDAERASGFRYSNRAYLVQIRRAGAGSVLIDPVSHGGDPLEVLAPVA 105

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D   E + H    D+  L    G+R   ++ T++A RL      +  L   ++ LL
Sbjct: 106 EVLSDA--EWVLHAADQDLPCL-AEIGMRPPSLYDTELAGRLANY--ERVNLAAMVQRLL 160

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           G+ ++K   ++DWS   L  + L YAA DV  L  LR   +E LQ  G+   A     +L
Sbjct: 161 GLQLTKGHGAADWSKRPLPQDWLNYAALDVEVLVDLRHAISEVLQEQGKEGWAAEEFEYL 220

Query: 188 MD 189
             
Sbjct: 221 RT 222


>gi|315444833|ref|YP_004077712.1| ribonuclease D [Mycobacterium sp. Spyr1]
 gi|315263136|gb|ADT99877.1| ribonuclease D [Mycobacterium sp. Spyr1]
          Length = 424

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 5/180 (2%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            A+  A      AVD E        +R  +VQ+   G GTV I  ++ G      L  + 
Sbjct: 44  AADLLASGTGPFAVDAERASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVA 103

Query: 71  VDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
                 E + H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+
Sbjct: 104 AVLSTDEWVLHAADQDLPCL-AEIGMRPTALYDTELAGRLAN--FDRVNLAAMVQRLLGL 160

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            ++K   ++DWS   L DE L YAA DV  L  LR      L   G+++ A     +L  
Sbjct: 161 QLTKGHGAADWSKRPLPDEWLNYAALDVEVLTDLREAIAAILDEQGKAEWARQEFEYLRT 220


>gi|329940178|ref|ZP_08289460.1| ribonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301004|gb|EGG44900.1| ribonuclease [Streptomyces griseoaurantiacus M045]
          Length = 428

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 10/189 (5%)

Query: 2   TTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58
             +   E  +    AA       +AVD E         R  +VQL   G G+  I  +A 
Sbjct: 43  PPVISDEAGLAEVVAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPVAC 102

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              +       + D   E + H    D+  L    G+R   +F T++A RL      + G
Sbjct: 103 --PDLSAFGAAIADA--EWVLHAATQDLPCL-REIGMRPTRLFDTELAGRLAG--FPRVG 155

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L   ++ +LG  + K   + DWS   L +  L+YAA DV  L  LR    ++L R G+ +
Sbjct: 156 LGAMVENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLE 215

Query: 179 LATSCCNFL 187
            A    + +
Sbjct: 216 WALQEFDAI 224


>gi|289768333|ref|ZP_06527711.1| ribonuclease [Streptomyces lividans TK24]
 gi|289698532|gb|EFD65961.1| ribonuclease [Streptomyces lividans TK24]
          Length = 428

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 8   EGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63
           + D  AE  A +      +AVD E         R  +VQL   G G+  I  +A    + 
Sbjct: 48  DADALAEVTAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC--PDL 105

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L   + D   E + H    D+  L    G+    +F T++A RL      + GL   +
Sbjct: 106 SGLGAAIADA--EWVLHAATQDLPCL-REIGMVPTRIFDTELAGRLAG--FPRVGLGAMV 160

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + +LG  + K   + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A   
Sbjct: 161 ENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQE 220

Query: 184 CNFL 187
            + +
Sbjct: 221 FDAI 224


>gi|90416003|ref|ZP_01223936.1| ribonuclease D [marine gamma proteobacterium HTCC2207]
 gi|90332377|gb|EAS47574.1| ribonuclease D [marine gamma proteobacterium HTCC2207]
          Length = 374

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 7/195 (3%)

Query: 1   MTTIR--VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           MTTI   +      AE   +  DA  +A+DTE +       +L ++QLS G+    I   
Sbjct: 1   MTTINHWIDNSQQLAELCEQLQDATELAIDTEFMRSDTFFAKLALIQLSDGEQCWLIDTP 60

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
           A  Q     L  +L   +   +FH    D+ VL     VR + +F +++A+ +       
Sbjct: 61  AIEQ--LQPLTALLNGPQLTLVFHSCGEDLEVLDQVLSVRPKKLFDSQVAAGIVN-IGYS 117

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            G    ++ +L I + K    SDW A  LSD Q +YAA DV++L  +     E L++  R
Sbjct: 118 MGYARLVENMLQIELGKEDTRSDWLARPLSDRQKRYAADDVLYLFRIYKLLLELLEQQQR 177

Query: 177 SDLATSCCNFLMDRA 191
                     L   A
Sbjct: 178 QSWFAEEMLDLQRVA 192


>gi|302866117|ref|YP_003834754.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029]
 gi|315502675|ref|YP_004081562.1| 3'-5' exonuclease [Micromonospora sp. L5]
 gi|302568976|gb|ADL45178.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029]
 gi|315409294|gb|ADU07411.1| 3'-5' exonuclease [Micromonospora sp. L5]
          Length = 439

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 8/172 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +A+D E         R  +VQL   G GT  I  +     +   L  ++ +   
Sbjct: 70  AAGTGPVALDAERASGYRYSQRAYLVQLRRGGAGTALIDPLP--LPDLSALDAVIAET-- 125

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+A L    G+R R +F T++A+RL      + GL    ++LLG ++ K  
Sbjct: 126 EWVLHAASQDLACL-AEVGLRPRRLFDTELAARLAG--FERVGLAALTEQLLGFSLEKHH 182

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            ++DWS+  L +  L YAA DV  L  LR    E+LQR G+S  A    + L
Sbjct: 183 SAADWSSRPLPESWLTYAALDVELLVDLRDSLDEELQRQGKSGWAAEEFDAL 234


>gi|262166092|ref|ZP_06033829.1| ribonuclease D [Vibrio mimicus VM223]
 gi|262025808|gb|EEY44476.1| ribonuclease D [Vibrio mimicus VM223]
          Length = 328

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 13/166 (7%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
           +  G+    I             V +L D    K+ H    D+ V    FG    P+  T
Sbjct: 1   MFDGENLSLIDP--TVIDEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDT 58

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           +I +     Y    G    +++ L + + K++  +DW A  LSD+QL+YAA+DV +L  +
Sbjct: 59  QIMAAFL-GYGLSTGFAALVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPM 117

Query: 164 RLQFTEKLQRLGRSDLATSCCNFL---------MDRAELDLLG-WE 199
             +  E++   G  + A                 + A LD+ G W+
Sbjct: 118 YEKLLERVTHAGWWEAALQESELQVAKRTKVSNPELAYLDIKGAWQ 163


>gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus equi ATCC 33707]
 gi|325556528|gb|EGD26194.1| ribonuclease III [Rhodococcus equi ATCC 33707]
          Length = 413

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 7/177 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            AE  A     +AVD E         R  +VQL   G G+  +  I   +   P    + 
Sbjct: 33  AAERLAAGTGPLAVDAERASGFRYSSRAYLVQLRRAGAGSFLLDPIPTAEDLEPLRDAI- 91

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                E + H    D+  L    G+    +F T++A RL      + GL   ++  LG+ 
Sbjct: 92  --NGLEWVLHSADQDLPCL-AELGLEPAALFDTELAGRLAG--FERVGLAAIVERTLGLE 146

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           + K   ++DWS   L D  L YAA DV  L  LR     +L   G+++ A      +
Sbjct: 147 LRKGHGAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQGKTEWAAQEFEHV 203


>gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
 gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
          Length = 295

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 9/189 (4%)

Query: 1   MTTIRVHEGDIPAECAARYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
           M  + V E     +   R +     +AVDTE+       DR+C++Q+S  +    I  ++
Sbjct: 1   MNPVVVIEKPSELDALVRQLSTARHLAVDTESNSFYAYFDRVCLIQISSPERDYIIDPLS 60

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
              K+   L  +  + + EK+ H    D+  L   F  R   +F T IA +L      Q 
Sbjct: 61  --LKDLSVLGRLFENPRIEKVLHAASNDVLGLRRDFQFRFNGLFDTAIACKLLGY--KQL 116

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           GL   L+   G++++K  Q  DW    L  +QL YA  D  +L ALR      LQ   R 
Sbjct: 117 GLSKILETHFGVSLNKRWQRYDWGKRPLVPDQLDYARLDTHYLIALRHMLAADLQS--RE 174

Query: 178 DLATSCCNF 186
             A +C  F
Sbjct: 175 LWAEACEAF 183


>gi|240169721|ref|ZP_04748380.1| hypothetical protein MkanA1_10437 [Mycobacterium kansasii ATCC
           12478]
          Length = 433

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 5/189 (2%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61
           ++ V + +  AE   R     AVD E        +R  ++Q+   G GTV I  ++ G +
Sbjct: 34  SVTVGQIEAAAELLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGGE 93

Query: 62  NAPNLVGMLV-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            A  L  +     + E I H    D+  L    G+R   ++ T++A RL     ++  L 
Sbjct: 94  PATALQPVAEVLRQDEWILHSADQDLPCL-AEVGMRPSALYDTELAGRLAG--FDRVNLA 150

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++ LLG+ ++K   ++DWS   L    L YAA DV  L  LR   ++ L   G++  A
Sbjct: 151 TMVERLLGLGLAKGHGAADWSKRPLPPAWLNYAALDVELLIELRAAISQVLTEQGKTGWA 210

Query: 181 TSCCNFLMD 189
                 L  
Sbjct: 211 AEEFEHLRT 219


>gi|296394326|ref|YP_003659210.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985]
 gi|296181473|gb|ADG98379.1| 3'-5' exonuclease [Segniliparus rotundus DSM 44985]
          Length = 470

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
             +AVD E         +  +VQ    G GTV +  I   +   P    +      E + 
Sbjct: 62  GPLAVDAERASGFRYWPKAYLVQFRRQGSGTVLLDPIGHPEALEPLAEAV---NGLEWVL 118

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+R   +F T++  R+      + GL   ++ LLG+ ++K   ++D
Sbjct: 119 HAADQDLPCL-AELGLRPAKLFDTELGGRIAG--FERVGLAALVEALLGVGLAKGHGAAD 175

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           WS   L  E L YAA DV  L  +R      L   G++  A      +  R
Sbjct: 176 WSQRPLPPEWLNYAALDVELLIPMREALLAVLAEQGKTQWALEEFEHVRTR 226


>gi|21224360|ref|NP_630139.1| ribonuclease [Streptomyces coelicolor A3(2)]
 gi|3169042|emb|CAA19240.1| putative ribonuclease [Streptomyces coelicolor A3(2)]
          Length = 394

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 8   EGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63
           + D  AE  A +      +AVD E         R  +VQL   G G+  I  +A    + 
Sbjct: 14  DADALAEVTAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC--PDL 71

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L   + D   E + H    D+  L    G+    +F T++A RL      + GL   +
Sbjct: 72  SGLGAAIADA--EWVLHAATQDLPCL-REIGMVPTRIFDTELAGRLAG--FPRVGLGAMV 126

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + +LG  + K   + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A   
Sbjct: 127 ENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQE 186

Query: 184 CNFL 187
            + +
Sbjct: 187 FDAI 190


>gi|145224502|ref|YP_001135180.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
 gi|145216988|gb|ABP46392.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
          Length = 424

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 5/180 (2%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            A+  A      AVD E        +R  +VQ+   G GTV I  ++ G      L  + 
Sbjct: 44  AADLLASGTGPFAVDAERASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVA 103

Query: 71  VDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
                 E + H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+
Sbjct: 104 AVLSTDEWVLHAADQDLPCL-AEIGMRPTALYDTELAGRLAN--FDRVNLAAMVQRLLGL 160

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            ++K   ++DWS   L DE L YAA DV  L  LR      L   G+++ A     +L  
Sbjct: 161 QLTKGHGAADWSKRPLPDEWLNYAALDVEVLTDLREAIAAVLDEQGKAEWARQEFEYLRT 220


>gi|239928248|ref|ZP_04685201.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
          Length = 398

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 8/172 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G GT  I  +A    +   L   L     
Sbjct: 26  AAGTGPVAVDAERASGYRYGQRAYLVQLRRQGAGTALIDPVAC--PDLSALGEALS--GV 81

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 82  EWVLHAATQDLPCL-REIGMLPTRLFDTELAGRLAG--FPRVGLGAMVENVLGYVLEKGH 138

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A    + +
Sbjct: 139 SAVDWSTRPLPEPWLRYAALDVELLVDLRNALEKELDRQGKLEWARQEFDAI 190


>gi|256784454|ref|ZP_05522885.1| ribonuclease [Streptomyces lividans TK24]
          Length = 384

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 8   EGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63
           + D  AE  A +      +AVD E         R  +VQL   G G+  I  +A    + 
Sbjct: 4   DADALAEVTAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC--PDL 61

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L   + D   E + H    D+  L    G+    +F T++A RL      + GL   +
Sbjct: 62  SGLGAAIADA--EWVLHAATQDLPCL-REIGMVPTRIFDTELAGRLAG--FPRVGLGAMV 116

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + +LG  + K   + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A   
Sbjct: 117 ENVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQE 176

Query: 184 CNFL 187
            + +
Sbjct: 177 FDAI 180


>gi|291436577|ref|ZP_06575967.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
 gi|291339472|gb|EFE66428.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
          Length = 432

 Score =  172 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 8/172 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G GT  I  +A    +   L   L     
Sbjct: 60  AAGTGPVAVDAERASGYRYGQRAYLVQLRRQGAGTALIDPVAC--PDLSALGEALS--GV 115

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 116 EWVLHAATQDLPCL-REIGMLPTRLFDTELAGRLAG--FPRVGLGAMVENVLGYVLEKGH 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A    + +
Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRNALEKELDRQGKLEWARQEFDAI 224


>gi|118467912|ref|YP_887109.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
 gi|118169199|gb|ABK70095.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
          Length = 415

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 9/182 (4%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG---QKNAPNLV 67
            A   A      A+D E        +R  +VQ+   G GT  I  +  G         + 
Sbjct: 39  AARQLAGGSGPFAIDAERASGFRYSNRAYLVQIRRAGAGTALIDPVNHGGSPIDTLEPVA 98

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
             L D+  E + H    D+  L    G+R   ++ T++A RL      +  L   ++ LL
Sbjct: 99  QTLADD--EWVLHAADQDLPCL-AEIGLRPGKLYDTELAGRLAG--FERVNLAAMVQRLL 153

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           G+ + K   ++DWS   L DE L YAA DV  L  LR      L+  G+++ A      L
Sbjct: 154 GLQLMKGHGAADWSKRPLPDEWLNYAALDVEVLLELRHAIAAVLEEQGKTEWAAQEFEHL 213

Query: 188 MD 189
             
Sbjct: 214 RT 215


>gi|119505873|ref|ZP_01627938.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
 gi|119458301|gb|EAW39411.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
          Length = 380

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 3/178 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            +AVDTE          + ++QL+       +  +     +   L  +       KI H 
Sbjct: 30  FVAVDTEFRRRDTFYPEVALIQLAAAGQCWLLDPLT--LDDTQPLQKLFRQTDLIKILHS 87

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+ V     GV  RP+  T+ A+ +          +D + +LL I+++K +  SDW 
Sbjct: 88  ASEDLEVFERWLGVLPRPMIDTQKAAAML-GLGFGLSYRDLVHDLLSIDVAKDETQSDWL 146

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199
              L+D Q  YA  DV  L         + +  G           ++      L  ++
Sbjct: 147 VRPLTDAQCHYAMQDVTFLAQCWPILEARAEASGYLSWILEESAAMVTGGRGPLAKFK 204


>gi|289570857|ref|ZP_06451084.1| conserved alanine rich protein [Mycobacterium tuberculosis T17]
 gi|289544611|gb|EFD48259.1| conserved alanine rich protein [Mycobacterium tuberculosis T17]
          Length = 443

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62
           + V E    AE   R     AVD E         R  ++Q+     GTV I  ++ G   
Sbjct: 65  VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 124

Query: 63  APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
              L  +       E I H    D+  L    G+R   ++ T++A RL     ++  L  
Sbjct: 125 LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 181

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ LLG+ ++K   ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 182 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 241

Query: 182 SCCNFL 187
                L
Sbjct: 242 QEFEHL 247


>gi|320163487|gb|EFW40386.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 467

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 10/188 (5%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           E  +P   AA   + I +DTE L       +LC++QLS       +  ++     +P ++
Sbjct: 149 EAFLPILAAA---ETIGLDTEFLSFPRYTPQLCVLQLSTETDLGIVDALSI----SPEML 201

Query: 68  GMLVDEKREK--IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
             L     EK  I H    D A+L+   G     VF T+IA+          G    ++ 
Sbjct: 202 KKLCLRICEKPVIVHSCSSDCAILYDIAGTLPAKVFDTQIAAAFC-YPIMMMGYGQLVET 260

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           L  + + K+   +DWS   L  +++ YA SDVVHLHA+R +   ++  LGR++   S   
Sbjct: 261 LFEVQVDKSLTLTDWSLRPLKKDEVAYAISDVVHLHAIRDKLNARIAELGRTEWFESEMA 320

Query: 186 FLMDRAEL 193
             +  A+L
Sbjct: 321 SAVSPAKL 328


>gi|291299881|ref|YP_003511159.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728]
 gi|290569101|gb|ADD42066.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728]
          Length = 407

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 8/167 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E       + R  ++QL   G GT  +     G ++   L   L D   E 
Sbjct: 43  ATGPVAVDAERASGFRYQPRAYLIQLRRAGAGTALVDP--TGFEDLRELNAALADT--EW 98

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+  L    G+R   +F T++A+RL      + GL   +++LLG  + K   +
Sbjct: 99  ILHAASQDLPCLAGE-GMRPPRLFDTELAARLCG--FERVGLAALVEKLLGFTLEKHHSA 155

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           +DWS   L  + L YAA DV  L  LR     +L+  G+ D A    
Sbjct: 156 ADWSTRPLPADWLTYAALDVELLVELRDILDAELRLQGKRDWADEEF 202


>gi|308232210|ref|ZP_07664029.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu001]
 gi|308371097|ref|ZP_07667091.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu003]
 gi|308374662|ref|ZP_07667838.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu006]
 gi|308375511|ref|ZP_07668042.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu007]
 gi|308378065|ref|ZP_07668659.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu009]
 gi|308379281|ref|ZP_07668932.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu010]
 gi|308380440|ref|ZP_07669197.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu011]
 gi|308214618|gb|EFO74017.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu001]
 gi|308329844|gb|EFP18695.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu003]
 gi|308341104|gb|EFP29955.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu006]
 gi|308346112|gb|EFP34963.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu007]
 gi|308353627|gb|EFP42478.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu009]
 gi|308357474|gb|EFP46325.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu010]
 gi|308361428|gb|EFP50279.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu011]
          Length = 468

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62
           + V E    AE   R     AVD E         R  ++Q+     GTV I  ++ G   
Sbjct: 65  VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 124

Query: 63  APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
              L  +       E I H    D+  L    G+R   ++ T++A RL     ++  L  
Sbjct: 125 LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 181

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ LLG+ ++K   ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 182 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 241

Query: 182 SCCNFL 187
                L
Sbjct: 242 QEFEHL 247


>gi|332667981|ref|YP_004450769.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100]
 gi|332336795|gb|AEE53896.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100]
          Length = 395

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 3/168 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           ++ +  D+E +G      RLC++Q++   G   I       KN    + M+ +    K+ 
Sbjct: 23  IEWMCFDSEFVGEKRFTTRLCLIQVATRHGLFLIDPFP--LKNLDPFLEMIENPNIVKVT 80

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H G  D  +L+ +FG   +  F T+IA+     Y      K  ++  L IN++K+   +D
Sbjct: 81  HAGENDYRLLYASFGTIPKNTFDTQIAAGFL-GYRYPLAFKKLVETELKINMNKSFTVAD 139

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           W A   +  QL+YA  D+  L+ L       L R  R   A      L
Sbjct: 140 WEARPFNQNQLKYAIQDIEPLYDLWKMQEADLLRKKRLHWAEEEFKVL 187


>gi|328885873|emb|CCA59112.1| Ribonuclease D [Streptomyces venezuelae ATCC 10712]
          Length = 427

 Score =  171 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 10/178 (5%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM 69
           I A  A R    +AVD E         R  +VQL   G GT  I  +  G  +   L   
Sbjct: 55  IAAFAAGR--GPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPV--GCPDLSGLGDA 110

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L     E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG 
Sbjct: 111 LA--GTEWILHAATQDLPCL-RDIGMLPTSLFDTELAGRLAG--FPRVGLGAMVESVLGY 165

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            + K   + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A    + +
Sbjct: 166 ALEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWAHQEFDAI 223


>gi|40063040|gb|AAR37896.1| ribonuclease D, putative [uncultured marine bacterium 560]
          Length = 358

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 3/169 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
            ++A+DTE   +      LC+VQ++       I  ++    +   L   L   K E I H
Sbjct: 32  SSLAIDTEFKRINTYYPELCLVQIATTQFAECIDVLSIN--DLEPLFEKLYHNKTEWIVH 89

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI  L++        +F T+IA+ L   Y  Q   +   + L  + + K+    DW
Sbjct: 90  SARQDIEALYHLSKRIPVSLFDTQIAASLLN-YPLQISYQALTEILQDVLLDKSYTRFDW 148

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +   L    ++YA  DV +L     +   +L    +         FL+D
Sbjct: 149 TTRPLPANVVEYALDDVRYLLPNFEKLKHELTISKKIQWLDEETRFLLD 197


>gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 294

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 10/191 (5%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A      +A+DTE+      R+R+C++QLS       +  I+    +   L  +L D  R
Sbjct: 28  ALAGERVLALDTESNSFHVYRERVCLLQLSTRTQDFVVDPISV---DVRPLGEILCD-GR 83

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H   +D+  L   +G R+  +F T IA+R  R      GL   ++   G+ +SKA 
Sbjct: 84  EVVLHGADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVESHFGVRLSKAF 141

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE--- 192
           Q SDW    L+ +QL YAA D   L  L    T +L   G  D A      +        
Sbjct: 142 QRSDWGRRPLTPDQLAYAALDTHFLLPLFDLLTGELAARGALDEAWKESQRIASVVARER 201

Query: 193 -LDLLGWENVD 202
             D  GW  V 
Sbjct: 202 VFDPEGWRRVK 212


>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 867

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 3/170 (1%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+    A  R V+  AVD E       +   C++Q+S       +          P L  
Sbjct: 264 DLKELVAKLRGVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLRE 323

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D K++KI H    DI  L   FG+ V  +F T  ASR+     N   L+  L+   G
Sbjct: 324 IFKDPKKKKIMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLGRN--SLEFLLQHFCG 381

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +  +K  Q++DW    L +E  +YA  D  +L  +      +L+R+ + D
Sbjct: 382 VTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDVMRLELERMAKDD 431


>gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana]
 gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
          Length = 870

 Score =  171 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 3/174 (1%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+    A  R V+  AVD E       +   C++Q+S       +          P L  
Sbjct: 268 DLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLRE 327

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D K++K+ H    DI  L   FG+ V  +F T  ASR+      ++ L+  L+   G
Sbjct: 328 IFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCG 385

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +  +K  Q++DW    L +E  +YA  D  +L  +      +LQR+ + D  T 
Sbjct: 386 VTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD 439


>gi|56460926|ref|YP_156207.1| ribonuclease D [Idiomarina loihiensis L2TR]
 gi|56179936|gb|AAV82658.1| Ribonuclease D [Idiomarina loihiensis L2TR]
          Length = 390

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 6/184 (3%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
               D+   C  A      A+D+E +       +L ++Q+     T  I  +A    +  
Sbjct: 18  TTTDDLQDLCQQAVKCGWFAIDSEFVRERTYYAQLGLLQIHANGTTAVIDPLADI--DLE 75

Query: 65  NLVGMLVDEKREKIFHYGRFDIA-VLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
            L  ++  ++ E + H G  DI      + G + + +F ++IA+       +  G    +
Sbjct: 76  PLWQLISGDEVETVLHAGGEDIELFFQQSSGRQPKQIFDSQIAAGFC-GLGDSMGYARLV 134

Query: 124 KELL-GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             L  G+ + K+   ++W    LSDEQL YAA+D  +L  +        +  G  D+   
Sbjct: 135 DALFDGVELDKSLSRTNWLKRPLSDEQLDYAAADASYLAIMYPYLKALCEEKGVLDIVYE 194

Query: 183 CCNF 186
               
Sbjct: 195 ESQI 198


>gi|15239221|ref|NP_198440.1| 3'-5' exonuclease domain-containing protein / helicase and RNase D
           C-terminal domain-containing protein / HRDC
           domain-containing protein [Arabidopsis thaliana]
          Length = 838

 Score =  170 bits (433), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 3/174 (1%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+    A  R V+  AVD E       +   C++Q+S       +          P L  
Sbjct: 236 DLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLRE 295

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D K++K+ H    DI  L   FG+ V  +F T  ASR+      ++ L+  L+   G
Sbjct: 296 IFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCG 353

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +  +K  Q++DW    L +E  +YA  D  +L  +      +LQR+ + D  T 
Sbjct: 354 VTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD 407


>gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana]
          Length = 834

 Score =  170 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 3/174 (1%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+    A  R V+  AVD E       +   C++Q+S       +          P L  
Sbjct: 231 DLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLRE 290

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D K++K+ H    DI  L   FG+ V  +F T  ASR+      ++ L+  L+   G
Sbjct: 291 IFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCG 348

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +  +K  Q++DW    L +E  +YA  D  +L  +      +LQR+ + D  T 
Sbjct: 349 VTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD 402


>gi|15609818|ref|NP_217197.1| hypothetical protein Rv2681 [Mycobacterium tuberculosis H37Rv]
 gi|15842219|ref|NP_337256.1| ribonuclease D, putative [Mycobacterium tuberculosis CDC1551]
 gi|148662522|ref|YP_001284045.1| putative ribonuclease D [Mycobacterium tuberculosis H37Ra]
 gi|148823871|ref|YP_001288625.1| hypothetical protein TBFG_12696 [Mycobacterium tuberculosis F11]
 gi|253798237|ref|YP_003031238.1| hypothetical protein TBMG_01292 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232787|ref|ZP_04926114.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis C]
 gi|254365342|ref|ZP_04981387.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis str. Haarlem]
 gi|289444223|ref|ZP_06433967.1| conserved alanine rich protein [Mycobacterium tuberculosis T46]
 gi|289448336|ref|ZP_06438080.1| conserved alanine rich protein [Mycobacterium tuberculosis CPHL_A]
 gi|289553533|ref|ZP_06442743.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 605]
 gi|289575379|ref|ZP_06455606.1| conserved alanine rich protein [Mycobacterium tuberculosis K85]
 gi|289746482|ref|ZP_06505860.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289751333|ref|ZP_06510711.1| conserved alanine rich protein [Mycobacterium tuberculosis T92]
 gi|289754783|ref|ZP_06514161.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308369826|ref|ZP_07419200.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu002]
 gi|308372367|ref|ZP_07428406.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu004]
 gi|308373474|ref|ZP_07432469.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu005]
 gi|308377095|ref|ZP_07441113.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu008]
 gi|308405939|ref|ZP_07494488.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu012]
 gi|2181972|emb|CAB09492.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium
           tuberculosis H37Rv]
 gi|13882508|gb|AAK47070.1| ribonuclease D, putative [Mycobacterium tuberculosis CDC1551]
 gi|124601846|gb|EAY60856.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis C]
 gi|134150855|gb|EBA42900.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506674|gb|ABQ74483.1| putative ribonuclease D [Mycobacterium tuberculosis H37Ra]
 gi|148722398|gb|ABR07023.1| conserved alanine rich protein [Mycobacterium tuberculosis F11]
 gi|253319740|gb|ACT24343.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289417142|gb|EFD14382.1| conserved alanine rich protein [Mycobacterium tuberculosis T46]
 gi|289421294|gb|EFD18495.1| conserved alanine rich protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438165|gb|EFD20658.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 605]
 gi|289539810|gb|EFD44388.1| conserved alanine rich protein [Mycobacterium tuberculosis K85]
 gi|289687010|gb|EFD54498.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289691920|gb|EFD59349.1| conserved alanine rich protein [Mycobacterium tuberculosis T92]
 gi|289695370|gb|EFD62799.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308326264|gb|EFP15115.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu002]
 gi|308333435|gb|EFP22286.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu004]
 gi|308337502|gb|EFP26353.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu005]
 gi|308348930|gb|EFP37781.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu008]
 gi|308365086|gb|EFP53937.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu012]
 gi|323718676|gb|EGB27838.1| alanine rich protein [Mycobacterium tuberculosis CDC1551A]
 gi|326904295|gb|EGE51228.1| conserved alanine rich protein [Mycobacterium tuberculosis W-148]
 gi|328458009|gb|AEB03432.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 438

 Score =  170 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62
           + V E    AE   R     AVD E         R  ++Q+     GTV I  ++ G   
Sbjct: 35  VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 94

Query: 63  APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
              L  +       E I H    D+  L    G+R   ++ T++A RL     ++  L  
Sbjct: 95  LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 151

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ LLG+ ++K   ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 152 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 211

Query: 182 SCCNFL 187
                L
Sbjct: 212 QEFEHL 217


>gi|119717898|ref|YP_924863.1| 3'-5' exonuclease [Nocardioides sp. JS614]
 gi|119538559|gb|ABL83176.1| 3'-5' exonuclease [Nocardioides sp. JS614]
          Length = 442

 Score =  170 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 11/199 (5%)

Query: 7   HEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63
            E  +   C   A     +A+D E         R  ++QL   G GT  +  I       
Sbjct: 48  TEAGLAEVCERIAAGTGPVAIDAERASGYRYSSRAYLIQLRREGSGTFLVDPIPFVI--L 105

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L   L  E  E I H    D+  L    G+    +F T++A RL      + GL   +
Sbjct: 106 PQLQEAL--EGTEWILHAATQDLPCL-AEVGLLPSRLFDTELAGRLLGY--PRVGLATLV 160

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + LLG  ++K   + DWS   L +  L+YAA DV  L  LR    ++L+  G+++ A   
Sbjct: 161 ETLLGSRLAKEHSAVDWSTRPLPEPWLEYAALDVEVLAELRDLLADELETAGKAEWARQE 220

Query: 184 CNFLMDRAELD-LLGWENV 201
            + L    + + +  W   
Sbjct: 221 FDALRSFVQAERVDAWRRT 239


>gi|296139599|ref|YP_003646842.1| 3'-5' exonuclease [Tsukamurella paurometabola DSM 20162]
 gi|296027733|gb|ADG78503.1| 3'-5' exonuclease [Tsukamurella paurometabola DSM 20162]
          Length = 404

 Score =  170 bits (432), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 10/182 (5%)

Query: 13  AECAA---RYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVG 68
           AECAA   R    IA+DTE         R  ++Q+   G G   +  I   +  AP +  
Sbjct: 32  AECAAALRRGTGPIALDTERASGFTYSSRAYLIQIKRTGSGLFLLDPIHEPEGLAPVIEA 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +      E + H    D+  L    G     +F T++A RL      +  L     E  G
Sbjct: 92  L---RGVEWVLHAADQDLPCLRDD-GFVCDALFDTELAGRLLGE--PRVNLAAMTSEFTG 145

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             ++K   ++DWS   L  + L YAA DV  L  LR +  E+L   G+   A     +  
Sbjct: 146 YALAKGHGAADWSTRPLPHDWLNYAALDVELLVDLRDEAYERLDAAGKLPWALEEFEYAR 205

Query: 189 DR 190
            R
Sbjct: 206 TR 207


>gi|31793853|ref|NP_856346.1| hypothetical protein Mb2700 [Mycobacterium bovis AF2122/97]
 gi|121638556|ref|YP_978780.1| hypothetical protein BCG_2694 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224991048|ref|YP_002645737.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|31619447|emb|CAD94885.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium bovis
           AF2122/97]
 gi|121494204|emb|CAL72682.1| Conserved hypothetical alanine rich protein [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224774163|dbj|BAH26969.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 438

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62
           + V E    AE   R     AVD E         R  ++Q+     GTV I  ++ G   
Sbjct: 35  VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 94

Query: 63  APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
              L  +       E I H    D+  L    G+R   ++ T++A RL     ++  L  
Sbjct: 95  LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 151

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ LLG+ ++K   ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 152 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAVISRVLAEQGKTDWAA 211

Query: 182 SCCNFL 187
                L
Sbjct: 212 QEFEHL 217


>gi|284990407|ref|YP_003408961.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160]
 gi|284063652|gb|ADB74590.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160]
          Length = 418

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 12/180 (6%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRIAAGQKNAPNLVGM 69
           AE  A     +AVD E         R  +VQL     G G +D I +         +V  
Sbjct: 47  AEALAAGSGPVAVDAERASGYRYGQRAYLVQLRRVGTGTGLIDPIPLPDLSVVQSAIVDA 106

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
                 E + H    D+  L    G+    +F T++A+RL      + GL   ++ LLG 
Sbjct: 107 ------EWVLHAASQDLPSL-AEVGLVPARLFDTELAARLAG--LPRVGLGAVVESLLGY 157

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K   ++DWS   L +E L YAA DV  L  LR      L+  G+++ A      ++ 
Sbjct: 158 RLEKGHSAADWSTRPLPEEWLVYAALDVEVLVDLRDALAAVLEEQGKTEWARQEFAAILA 217


>gi|307107266|gb|EFN55509.1| hypothetical protein CHLNCDRAFT_133914 [Chlorella variabilis]
          Length = 1092

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 61/153 (39%), Gaps = 2/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +AVD E       +   C++QLS     + I  +A      P L  +  D    K+ H  
Sbjct: 270 LAVDLEAHSYRSFQGFCCLMQLSTRSEDLVIDTLALRAHVGPALAPIFADPGVVKVLHGA 329

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+A L   FG+ +  +F T  A+R+       HGL   L    G    K  Q +DW  
Sbjct: 330 DSDVAWLQRDFGLFLANLFDTGQAARVLGMRG--HGLAHLLDFYCGFKADKRFQLADWRV 387

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L+ E L YA SD  HL     +    L   G
Sbjct: 388 RPLTPEMLHYARSDTHHLLYCYDKLKAALAEAG 420


>gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
 gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
          Length = 288

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 10/191 (5%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A      +A+DTE+      R+R+C++QLS       +  I+    +   L  +L D  R
Sbjct: 24  ALAGERVLALDTESNSFHVYRERVCLLQLSTRAQDFVVDPISV---DVRPLGEILCD-GR 79

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H   +D+  L   +G R+  +F T IA+R  R      GL   ++   G+ +SKA 
Sbjct: 80  EVVLHGADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVEAHFGVRLSKAF 137

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE--- 192
           Q SDW    L+ +QL YAA D   L  L    T +L   G  + A      +        
Sbjct: 138 QRSDWGRRPLTPDQLAYAALDTHFLLPLFDLLTGELATRGALEEAWKESQRIASVVARER 197

Query: 193 -LDLLGWENVD 202
             D  GW  + 
Sbjct: 198 VFDPEGWRRIK 208


>gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica]
          Length = 354

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
               A+DTE   L   R+ LC++Q S    +V I  +    ++   L   L +       
Sbjct: 21  SPVCAIDTEADSLHRYRESLCLIQFSAKGESVLIDPL--VIEDLSPLGSYLSEATV--WM 76

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H   +D+ +    FG   + V+ T+I +RL      + GL D +    G+ +SK+ Q +D
Sbjct: 77  HGADYDMTMFKRQFGDLPKVVYDTQIGARLLGA--RRFGLGDLVSLYFGVELSKSSQKAD 134

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           W    LS + ++YA +DV +L  +      KL+ LGR +     C     R 
Sbjct: 135 WGKRPLSPKMIEYALNDVHYLLEMGDLIVTKLKDLGRYEWFLESCTAARRRV 186


>gi|229820453|ref|YP_002881979.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333]
 gi|229566366|gb|ACQ80217.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333]
          Length = 416

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 8/173 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  AR   A+AVD E         R  +VQ+   G GT  I  IA    +   L   L D
Sbjct: 29  EAVARADGAVAVDAERASGYRYGQRAYLVQIRRLGAGTALIDPIAC--PDLSGLSAALGD 86

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
              E + H    D+  L    G+  R VF T++A RL      + GL   +++ LG+ ++
Sbjct: 87  A--EWVLHAANQDLPCL-AEVGLVPRHVFDTELAGRLLG--RERVGLAAIVEQELGLTLA 141

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           K   + DWS   L ++ L+YAA DV  L  LR      L R G+++ A     
Sbjct: 142 KEHSAVDWSTRPLREDWLRYAALDVEVLVELRDALERDLVRAGKAEWAREEFE 194


>gi|148272845|ref|YP_001222406.1| putative ribonuclease D [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830775|emb|CAN01715.1| putative ribonuclease D [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 496

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 8/173 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A     IAVD E         R  ++Q+   G GT      A G      L  ++ D
Sbjct: 116 EAIAAGTGPIAVDAERASGFRYSQRAYLIQVFRRGAGTFLFDPPAVGG--FSELDAVIRD 173

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
              E + H    D+A L    G+  + +F T++ASRL      + GL   ++ELLGI+++
Sbjct: 174 --VEWVLHAASQDLACL-REVGLDPQRIFDTELASRLLG--LPRVGLGTVVEELLGIHLA 228

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           K   ++DWS   L    L YAA DV  L  +R +   +L+  G++ +A     
Sbjct: 229 KEHSAADWSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTGIAEQEFA 281


>gi|15827504|ref|NP_301767.1| hypothetical protein ML1040 [Mycobacterium leprae TN]
 gi|221229981|ref|YP_002503397.1| hypothetical protein MLBr_01040 [Mycobacterium leprae Br4923]
 gi|699161|gb|AAA62926.1| u1764u [Mycobacterium leprae]
 gi|13093054|emb|CAC31421.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933088|emb|CAR71135.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 429

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 5/183 (2%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            AE   +     AVDTE        +R  ++Q+     GTV I  ++ G      L  + 
Sbjct: 39  AAERLDQGYGPFAVDTERASGFRYSNRAYLIQIRRANAGTVLIDPVSHGNDPLTALRPVA 98

Query: 71  VD-EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
               K E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG 
Sbjct: 99  EVISKDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLATMVQRLLGF 155

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            ++K   ++DWS   L  + L YAA DV  L  LR   ++ L    ++D AT   N+L  
Sbjct: 156 ELAKGHGAADWSKRPLPSDWLNYAALDVELLIELRTAISKVLAEQDKTDWATQEFNYLRT 215

Query: 190 RAE 192
            A 
Sbjct: 216 YAT 218


>gi|331696705|ref|YP_004332944.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190]
 gi|326951394|gb|AEA25091.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190]
          Length = 394

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 73/178 (41%), Gaps = 7/178 (3%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71
           A   A     +AVD E         R  +VQL   G G+  I  I  G  +   L   L 
Sbjct: 24  AAAFAAGSGPVAVDAERASGFRYSQRAYLVQLRRAGAGSALIDPIPLGS-DLSALSPALT 82

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
               E + H    D+  L    G+    +F T++A RL      + GL   +++LLG+ +
Sbjct: 83  GP--EWVLHAASQDLPCL-AEVGLAPTSLFDTELAGRLAG--LPRVGLGPMVEQLLGLAL 137

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            K   ++DWS   L ++ L YAA DV  L  LR      L   G+S+ A      +  
Sbjct: 138 EKGHGAADWSRRPLPEDWLVYAALDVEVLIELRDLLAGMLAEQGKSEFAAQEFEAVRT 195


>gi|295835905|ref|ZP_06822838.1| ribonuclease D [Streptomyces sp. SPB74]
 gi|295825772|gb|EFG64472.1| ribonuclease D [Streptomyces sp. SPB74]
          Length = 430

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 10/178 (5%)

Query: 11  IPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLV 67
           +    AA       +AVD E         R  +VQL   G GT  I  +A    +   L 
Sbjct: 54  LADAVAAFAGGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC--PDLSGLG 111

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
             L     E   H    D+  L    G+    +F T++A RL      + GL   ++ +L
Sbjct: 112 AALA--SAEWDLHAATQDLPCL-REIGMVPHTLFDTELAGRLAG--FPRVGLGAMVENVL 166

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           G  + K   + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A    +
Sbjct: 167 GYTLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWALEEFD 224


>gi|215428107|ref|ZP_03426026.1| hypothetical protein MtubT9_17623 [Mycobacterium tuberculosis T92]
 gi|297635289|ref|ZP_06953069.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN 4207]
          Length = 416

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62
           + V E    AE   R     AVD E         R  ++Q+     GTV I  ++ G   
Sbjct: 13  VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 72

Query: 63  APNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
              L  +       E I H    D+  L    G+R   ++ T++A RL     ++  L  
Sbjct: 73  LTVLAPVAEVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAA 129

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ LLG+ ++K   ++DWS   L    L YAA DV  L  LR   +  L   G++D A 
Sbjct: 130 MVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAA 189

Query: 182 SCCNFL 187
                L
Sbjct: 190 QEFEHL 195


>gi|290956585|ref|YP_003487767.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260646111|emb|CBG69204.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 397

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 8/170 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E         R  +VQL   G GT  I  +A    +   L   L     E 
Sbjct: 28  GTGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC--PDLSGLGEALS--GVEW 83

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L     +    +F T++A RL      + GL   ++ +LG  + K   +
Sbjct: 84  VLHAATQDLPCL-REIDMVPTRIFDTELAGRLAG--FPRVGLGAMVEGVLGYVLEKGHSA 140

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            DWS   L +  L+YAA DV  L  LR    ++L R G+ + A    + +
Sbjct: 141 VDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQEFDAI 190


>gi|283781120|ref|YP_003371875.1| 3'-5' exonuclease [Pirellula staleyi DSM 6068]
 gi|283439573|gb|ADB18015.1| 3'-5' exonuclease [Pirellula staleyi DSM 6068]
          Length = 399

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 3/176 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
               + IA DTE +     +  LC++Q++  DG + II     Q  +P    +L +  RE
Sbjct: 19  LASAEIIAFDTEFVSEDSYQPELCLIQVAA-DGNLAIIDPLEVQDLSP-FWNLLTEPGRE 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            + H GR +    F   G R    F  +IA+ L              + L+G ++ K + 
Sbjct: 77  TLVHAGREEFRFCFKGAGRRPHKWFDVQIAAGLIGMEFPA-SYGTLAQRLIGKSLPKDET 135

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            +DW    LS  QL+YA  DV+ L  +R     KL++LGR     +      D+ E
Sbjct: 136 RTDWRRRPLSQRQLEYALLDVLDLEQIRDVLVGKLEKLGRLSWLDTELAAWQDQIE 191


>gi|297203084|ref|ZP_06920481.1| ribonuclease D [Streptomyces sviceus ATCC 29083]
 gi|297148288|gb|EDY56116.2| ribonuclease D [Streptomyces sviceus ATCC 29083]
          Length = 262

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 11/184 (5%)

Query: 8   EGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63
           + D  AE  A +      +AVD E         R  +VQL   G GT  I  +A    + 
Sbjct: 48  DEDALAEVIAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC--PDL 105

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L   L     E + H    D+  L    G+    +F T++A R+      + GL   +
Sbjct: 106 SGLGEALS--GAEWVLHAATQDLPCL-REIGMIPSRLFDTELAGRIAG--FPRVGLGAMV 160

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + +LG  + K   + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A   
Sbjct: 161 EGVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWALQE 220

Query: 184 CNFL 187
            + +
Sbjct: 221 FDAI 224


>gi|225156183|ref|ZP_03724663.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2]
 gi|224803073|gb|EEG21316.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2]
          Length = 389

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 6/174 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           P   A   V  +A+DTE   +   + R+C++Q    DG V ++ +       P L   L 
Sbjct: 40  PFLAALDRVKEVALDTEADNMYHYQTRVCLLQFLI-DGEVWLVDLMTPLPLKP-LWEKLA 97

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            +    + H   FD+ +L    G R + +F T +A++L      + GL   L E  G+ +
Sbjct: 98  TKHL--VMHGSDFDLRLLHDLCGFRPKSLFDTMLAAQLLNRQ--RIGLAALLSEHFGVTL 153

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
            K  Q ++WS   L+ + L YA+ DV HL ALR   T +L RLGR +     C 
Sbjct: 154 DKGGQKANWSKRPLTPKLLDYASLDVWHLPALRDILTRELSRLGRMEWMEQQCR 207


>gi|323359928|ref|YP_004226324.1| ribonuclease D [Microbacterium testaceum StLB037]
 gi|323276299|dbj|BAJ76444.1| ribonuclease D [Microbacterium testaceum StLB037]
          Length = 398

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 6/179 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            ++  A     +AVD E         R  ++Q+   D  V +   +  +  +P L   L 
Sbjct: 16  ASDRLAAGTGPVAVDVERASGFRYSQRAYLIQVFRRDAGVFLFDPSTIEDFSP-LQAALA 74

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D   E +FH    D+  L    G+    +F T++ +RL      + GL   +++ LGI +
Sbjct: 75  D--VEWVFHAASQDLPSL-RERGLEPPRIFDTELGARLLGH--ERVGLGAVVEQTLGITL 129

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +KA  ++DWS   L    L+YAA DV HL  +R     +L+   +++ A      +++R
Sbjct: 130 AKAHSAADWSTRPLPASWLEYAALDVEHLIDVRDVLVAELEEQQKTEFARQEFQAVLER 188


>gi|271967979|ref|YP_003342175.1| ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
 gi|270511154|gb|ACZ89432.1| Ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
          Length = 408

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 8/174 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G G+  I        +   L  +L     
Sbjct: 35  AEGTGPVAVDAERASGYRYSGRAYLVQLRRAGAGSALIDPTYC--PDLSELDTVLA--GA 90

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G   R +F T++A RL      + GL   ++ +LG+ + K  
Sbjct: 91  EVVLHAASQDLPCL-AELGFHPRELFDTELAGRLLGY--ERVGLGMMVENVLGLKLEKGH 147

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            ++DWS   L ++ L+YAA DV  L  LR    E+L+  G+   A      ++ 
Sbjct: 148 SAADWSTRPLPEDWLRYAALDVEVLVELRDVLHEELKTSGKLAWAQEEFASVLA 201


>gi|291448576|ref|ZP_06587966.1| ribonuclease D [Streptomyces roseosporus NRRL 15998]
 gi|291351523|gb|EFE78427.1| ribonuclease D [Streptomyces roseosporus NRRL 15998]
          Length = 373

 Score =  169 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 8/172 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G G+  +  +  G  +   L   L  +  
Sbjct: 56  AAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALVDPV--GCPDLSGLGTAL--DGT 111

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 112 EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAG--FPRVGLGAMVENVLGYALEKGH 168

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            + DWS   L +  L+YAA DV  L  LR    E+L R G+ + A    + +
Sbjct: 169 SAVDWSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGKLEWAREEFDAI 220


>gi|333023774|ref|ZP_08451838.1| putative ribonuclease [Streptomyces sp. Tu6071]
 gi|332743626|gb|EGJ74067.1| putative ribonuclease [Streptomyces sp. Tu6071]
          Length = 431

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 8/170 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G GT  I  +A    +   L   L +   
Sbjct: 62  ASGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC--PDLSGLGAALANA-- 117

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E   H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 118 EWDLHAATQDLPCL-REIGMVPHSLFDTELAGRLAG--FPRVGLGAMVENVLGYTLEKGH 174

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
            + DWS   L +  L+YAA DV  L  LR    ++L+R G+ + A    +
Sbjct: 175 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWALEEFD 224


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 91/208 (43%), Gaps = 11/208 (5%)

Query: 4   IRVHEGDI-PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+ P     +    +A+DTET GL P  DRL ++Q+S     V +I  AA   +
Sbjct: 79  IISQPSDLTPYFHTVKEAPLLAIDTETTGLDPHSDRLRLIQISAPGIPVLVIDCAAFLPD 138

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLK 120
               +  L++   EKIFH  RFD+  L    G+   PVF T +A++L R      + GL 
Sbjct: 139 GFACLKELLNTPSEKIFHNARFDLQFLM-GIGIDCFPVFDTMLAAQLLRPCGGPLKAGLA 197

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
                 LGI + K +Q+  W +  L+  QL YAA D   L  L       L R G    A
Sbjct: 198 VVADHYLGIKLDKTEQTGSWDSASLTGSQLAYAALDAWILLKLYDVMNPLLARHGLGRTA 257

Query: 181 TSCCNFLMDRAE-------LDLLGWENV 201
           +     +   A        LDL  W+ +
Sbjct: 258 SIEFACVSAIARTEYDGINLDLEKWDEL 285


>gi|170782038|ref|YP_001710370.1| putative ribonuclease [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156606|emb|CAQ01757.1| putative ribonuclease [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 443

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 8/173 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A     IAVD E         R  ++Q+   G GT      A G  +   L  ++ D
Sbjct: 63  EAIAAGTGPIAVDAERASGFRYSQRAYLIQVFRRGAGTFLFDPPAIG--DFSELDEVIRD 120

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
              E + H    D+A L    G+  + +F T++ASRL      + GL   ++ELLGI+++
Sbjct: 121 --VEWVLHAASQDLACL-REVGLDPQRIFDTELASRLLG--LPRVGLGTVVEELLGIHLA 175

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           K   ++DWS   L    L YAA DV  L  +R +   +L+  G++ +A     
Sbjct: 176 KEHSAADWSTRPLPRAWLVYAALDVELLVDVRDEIARRLEEQGKTAIAEQEFA 228


>gi|302537554|ref|ZP_07289896.1| ribonuclease D [Streptomyces sp. C]
 gi|302446449|gb|EFL18265.1| ribonuclease D [Streptomyces sp. C]
          Length = 428

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 8/170 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G G+  I  +  G  +   L   L     
Sbjct: 60  AAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPV--GCPDLSALGEALS--GT 115

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 116 EWILHAATQDLPCL-REIGMVPTSLFDTELAGRLAG--FPRVGLGAMVEGVLGYALEKGH 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
            + DWS   L +  L+YAA DV  L  LR    ++L R G+ + A    +
Sbjct: 173 SAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLEWARQEFD 222


>gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
 gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
          Length = 296

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 6/170 (3%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +A+DTE+      R+R+C++Q+S       +  +A    +   L  +L D  RE 
Sbjct: 27  RAEPVVALDTESNSFHVYRERICLLQVSTRAADYIVDPLAV---DPSPLGEVLCD-GRET 82

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H   +D+  L   +G  +  +F T  A+R  R      GL   ++   G+ +SK  Q 
Sbjct: 83  VLHGADYDVRCLRREYGWHLPRLFDTMAAAR--RLGRQGLGLSALVEAHFGVRLSKTFQR 140

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           SDW    L+  QL YAA D  +L ALR     +L  LG S+ A      +
Sbjct: 141 SDWGQRPLTAAQLAYAALDTHYLLALRDMLAGELDTLGASEQARREFERI 190


>gi|40063706|gb|AAR38487.1| ribonuclease D, putative [uncultured marine bacterium 583]
          Length = 341

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 3/174 (1%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +A+DTE   +     +LC+VQ++       I  ++    +   L   L   K E I H
Sbjct: 19  SRLAIDTEFKRINTYYPQLCLVQIATTHSLECIDVLSIN--DLEPLFEKLYRSKTEWIVH 76

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             R DI   ++        +F T+IA+ L   Y  Q   +   + L  I + K+    DW
Sbjct: 77  SARQDIEAFYHLSKRIPVSLFDTQIAASLLN-YPLQISYQLITEVLQDIQLDKSFTRFDW 135

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
           +   L  + ++YA  DV +L     +   +L    +         FL+D+   +
Sbjct: 136 TTRPLPADVVEYALDDVRYLLPNFEKLKHELTISKKIQWLDEETRFLLDQDLYE 189


>gi|304312978|ref|YP_003812576.1| Ribonuclease D [gamma proteobacterium HdN1]
 gi|301798711|emb|CBL46944.1| Ribonuclease D [gamma proteobacterium HdN1]
          Length = 377

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 1/176 (0%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
                 +A+DTE +        L ++Q++  D  + I  I A   +    + +  +++  
Sbjct: 20  LSQQSVVALDTEFMRSDTFYPILGLLQVASQDTVLLIDGIDAVCMSIAAEMLLNENQQPT 79

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            + H    D+ V    +      +  T++A+     +  Q  L++ L   LG+++ K + 
Sbjct: 80  WVLHSCAEDLEVALNQWDALPNRLVDTQLAAAHL-GHPRQMSLQNLLAVELGVHLPKDET 138

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            SDW    LS  QL YAA DV HL  L  + +  L    R    T  C  L+ +A 
Sbjct: 139 RSDWCKRPLSSAQLSYAAGDVAHLLPLWEKLSHTLHERDRMSWFTEDCAKLIAKAR 194


>gi|219558691|ref|ZP_03537767.1| hypothetical protein MtubT1_15842 [Mycobacterium tuberculosis T17]
          Length = 379

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 5/178 (2%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            AE   R     AVD E         R  ++Q+     GTV I  ++ G      L  + 
Sbjct: 9   AAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVA 68

Query: 71  VDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
                 E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+
Sbjct: 69  EVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAAMVERLLGL 125

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            ++K   ++DWS   L    L YAA DV  L  LR   +  L   G++D A      L
Sbjct: 126 GLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHL 183


>gi|167970096|ref|ZP_02552373.1| conserved alanine rich protein [Mycobacterium tuberculosis H37Ra]
 gi|215404645|ref|ZP_03416826.1| hypothetical protein Mtub0_13363 [Mycobacterium tuberculosis
           02_1987]
 gi|215431621|ref|ZP_03429540.1| hypothetical protein MtubE_13303 [Mycobacterium tuberculosis
           EAS054]
 gi|254551737|ref|ZP_05142184.1| hypothetical protein Mtube_14982 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187698|ref|ZP_05765172.1| hypothetical protein MtubCP_16944 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201808|ref|ZP_05769299.1| hypothetical protein MtubT4_17360 [Mycobacterium tuberculosis T46]
 gi|260205991|ref|ZP_05773482.1| hypothetical protein MtubK8_17005 [Mycobacterium tuberculosis K85]
 gi|294994226|ref|ZP_06799917.1| 3'-5' exonuclease [Mycobacterium tuberculosis 210]
 gi|297732285|ref|ZP_06961403.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN R506]
 gi|313659618|ref|ZP_07816498.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN V2475]
          Length = 404

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 5/178 (2%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            AE   R     AVD E         R  ++Q+     GTV I  ++ G      L  + 
Sbjct: 9   AAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVA 68

Query: 71  VDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
                 E I H    D+  L    G+R   ++ T++A RL     ++  L   ++ LLG+
Sbjct: 69  EVLSTNEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FDRVNLAAMVERLLGL 125

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            ++K   ++DWS   L    L YAA DV  L  LR   +  L   G++D A      L
Sbjct: 126 GLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHL 183


>gi|318061059|ref|ZP_07979780.1| ribonuclease D [Streptomyces sp. SA3_actG]
 gi|318079172|ref|ZP_07986504.1| ribonuclease D [Streptomyces sp. SA3_actF]
          Length = 431

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 8/168 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E         R  +VQL   G GT  I  +A    +   L   L +   E 
Sbjct: 64  GSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC--PDLSGLGAALANA--EW 119

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   +
Sbjct: 120 DLHAATQDLPCL-REIGMVPHSLFDTELAGRLAG--FPRVGLGAMVENVLGYTLEKGHSA 176

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
            DWS   L +  L+YAA DV  L  LR    ++L+R G+ + A    +
Sbjct: 177 VDWSTRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWALEEFD 224


>gi|187735079|ref|YP_001877191.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
 gi|187425131|gb|ACD04410.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
          Length = 352

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 6/178 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            AA+    + +D E   L   ++++C++Q +   G+  I  ++   ++       L + +
Sbjct: 15  AAAQPAGRVVLDLEADSLHRYQEKICLIQYADETGSCLIDPLS--IEDMGPFYNWLKETE 72

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
                H   +D+++    +      ++ T+ A+RL      Q GL   ++   GI +SK+
Sbjct: 73  V--WMHGADYDMSLFQNAWETLPAMIWDTQTAARLLG--FRQFGLAALVEHFHGITLSKS 128

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            Q +DW+   LS   + YA +DV ++  +  + T  L++ GR       C   M+RA 
Sbjct: 129 SQKADWARRPLSPTMVTYALNDVNYMLDMADKLTAALRKKGRMGWFEEICRHSMERAR 186


>gi|307325177|ref|ZP_07604381.1| 3'-5' exonuclease [Streptomyces violaceusniger Tu 4113]
 gi|306889323|gb|EFN20305.1| 3'-5' exonuclease [Streptomyces violaceusniger Tu 4113]
          Length = 425

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 11/181 (6%)

Query: 8   EGDIPAECAA---RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63
           + D  AE  A        +AVD E         R  +VQL   G GT  I  +  G  + 
Sbjct: 44  DADALAEVIATFAAGHGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV--GCPDL 101

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L   + D   E + H    D+  L    G+    +F T++A RL      + GL   +
Sbjct: 102 SGLGAAIADA--EWVLHAATQDLPCL-RDIGMIPARIFDTELAGRLAG--FARVGLGAMV 156

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + +LG  + K   + DWS   L +  L YAA DV  L  LR    E+L+R  + + A   
Sbjct: 157 ENILGYALEKGHSAVDWSTRPLPEPWLHYAALDVELLVDLRDALEEELERQSKLEWAHQE 216

Query: 184 C 184
            
Sbjct: 217 F 217


>gi|302522528|ref|ZP_07274870.1| ribonuclease D [Streptomyces sp. SPB78]
 gi|302431423|gb|EFL03239.1| ribonuclease D [Streptomyces sp. SPB78]
          Length = 431

 Score =  168 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 8/168 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E         R  +VQL   G GT  I  +A    +   L   L +   E 
Sbjct: 64  GSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC--PDLSGLGAALANA--EW 119

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   +
Sbjct: 120 DLHAATQDLPCL-REIGMVPHSLFDTELAGRLAG--FPRVGLGAMVENVLGYTLEKGHSA 176

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
            DWS   L +  L+YAA DV  L  LR    ++L+R G+ + A    +
Sbjct: 177 VDWSTRPLPEPWLRYAALDVELLVDLRDALEKELERQGKLEWALEEFD 224


>gi|296120940|ref|YP_003628718.1| ribonuclease D [Planctomyces limnophilus DSM 3776]
 gi|296013280|gb|ADG66519.1| Ribonuclease D [Planctomyces limnophilus DSM 3776]
          Length = 423

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 4/190 (2%)

Query: 6   VHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             + +  A C + R    +  DTE +     R  LC++QL+  D  V +       ++  
Sbjct: 7   TQQHEFEAFCKSIRQAGIVGFDTEFISEFTWRPELCLLQLATPDRAVLVDPFEV--RDLA 64

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +++D     + H GR +        G         +IA    R  +   G    +K
Sbjct: 65  PWWEIMLDPDVVVVAHGGREEARFCVTNTGQAPVNFKDVQIAEGF-RGRSFPLGYDALVK 123

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            +LG      +  SDW    L+  Q+ YA  DV H+  +  + +  L++  R        
Sbjct: 124 RVLGHKSHGKETRSDWRRRPLTKSQVHYALEDVQHILPIWAKQSADLKKKNRLAWVEDEF 183

Query: 185 NFLMDRAELD 194
             L+    L+
Sbjct: 184 TRLVRDVVLE 193


>gi|319950372|ref|ZP_08024289.1| ribonuclease D-like protein [Dietzia cinnamea P4]
 gi|319435942|gb|EFV91145.1| ribonuclease D-like protein [Dietzia cinnamea P4]
          Length = 210

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 108/204 (52%), Gaps = 7/204 (3%)

Query: 3   TIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           T ++ EGDI A     Y+ A  IAVDTET GL    DRL ++QLS       ++R++AG 
Sbjct: 6   THQILEGDIDAPTFEAYISAGRIAVDTETSGLSWAADRLNLIQLSAQSVGGSLVRLSAGA 65

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHG 118
             AP L  +L      KIFH+  FD+  +      + + + CTK AS+L     +  QH 
Sbjct: 66  --APLLKDLLESRDVVKIFHFAPFDLRFITQLGVAQAQNIRCTKTASKLLDPQLDPKQHS 123

Query: 119 LKDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           L+  L   LG+ I+K + ++SDWSA  LSD Q++YA  DV HL  L  +  ++L+     
Sbjct: 124 LRALLLRKLGVEITKGEARTSDWSARSLSDSQIRYALDDVAHLERLHSKLEKELEERSLI 183

Query: 178 DLATSCCNFLMDRAELDLLGWENV 201
           +L    C+++   A L+  G  N 
Sbjct: 184 ELYRQICDYIPIDALLETSGVPNP 207


>gi|149911424|ref|ZP_01900042.1| RNase D, processes tRNA precursor [Moritella sp. PE36]
 gi|149805532|gb|EDM65537.1| RNase D, processes tRNA precursor [Moritella sp. PE36]
          Length = 376

 Score =  168 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 7/178 (3%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A+CA   V+ +A+DTE +        L + QL  G  T  +  +A   ++  +L  +L  
Sbjct: 17  AQCA--EVEVLAIDTEFIRQRTYYPILGLFQLYTGTETYLVDPLAV--EDLSSLWQLL-- 70

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           ++   + H    D+ V              T+IA+      ++       + E   I + 
Sbjct: 71  DRHPVVLHACSEDLDVFMTVANKFPDFFHDTQIAAAFCGLGSSLG-FGGLVAEYQKITLD 129

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           K +  S+W A  L+++QL YAA+DV HL     +   KL  LG  D      + L  R
Sbjct: 130 KGESRSNWLARPLTEKQLSYAAADVYHLLPCWNELEAKLNELGYYDYYLQELDNLRRR 187


>gi|239991576|ref|ZP_04712240.1| putative ribonuclease D [Streptomyces roseosporus NRRL 11379]
          Length = 384

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 8/172 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G G+  +  +  G  +   L   L  +  
Sbjct: 16  AAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALVDPV--GCPDLSGLGTAL--DGT 71

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 72  EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAG--FPRVGLGAMVENVLGYALEKGH 128

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            + DWS   L +  L+YAA DV  L  LR    E+L R G+ + A    + +
Sbjct: 129 SAVDWSTRPLPEPWLRYAALDVELLIDLRDALEEELDRQGKLEWAREEFDAI 180


>gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 288

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 10/191 (5%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A      +A+DTE+      R+R+C++QLS       +  I+    +   L  +L D  R
Sbjct: 24  ALAGERVLALDTESNSFHVYRERVCLLQLSTRAQDFVVDPISV---DVRPLGEILCD-GR 79

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H   +D+  L   +G R+  +F T IA+R  R      GL   ++   G+ +SKA 
Sbjct: 80  EVVLHGADYDVRCLHREYGWRIPRLFDTMIAAR--RLGRPGLGLSALVEAHFGVRLSKAF 137

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE--- 192
           Q SDW    L+ +QL YA+ D   L  L    T +L   G  + A      +        
Sbjct: 138 QRSDWGRRPLTPDQLAYASLDTHFLLPLFDLLTGELATRGALEEAWKESQRIASVVARER 197

Query: 193 -LDLLGWENVD 202
             D  GW  + 
Sbjct: 198 VFDPEGWRRIK 208


>gi|237808321|ref|YP_002892761.1| ribonuclease D [Tolumonas auensis DSM 9187]
 gi|237500582|gb|ACQ93175.1| ribonuclease D [Tolumonas auensis DSM 9187]
          Length = 365

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 3/165 (1%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           +DTE + +     +L ++QL        I  +A    N   L   +  + R  +FH  + 
Sbjct: 27  LDTEFIRVSTYFPKLGLLQLHLNAVDYLIDPLAINSINL--LWDAIFSDHRLFVFHSCKE 84

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           D+ VL          VF T++A+     Y    G    ++++  + ++K Q  +DW A  
Sbjct: 85  DLDVLQVCAQKLPGRVFDTQVAAAFL-GYGASLGYAGLVEKVCDVTVAKDQTLTDWLARP 143

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           L+  Q  YAA DV +L  L    +++L   G+++        L++
Sbjct: 144 LTAAQKLYAAKDVSYLQYLYDHLSQELNTTGKTEWFNEEMTALLE 188


>gi|312196135|ref|YP_004016196.1| 3'-5' exonuclease [Frankia sp. EuI1c]
 gi|311227471|gb|ADP80326.1| 3'-5' exonuclease [Frankia sp. EuI1c]
          Length = 440

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 12/180 (6%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLV 71
           AE  A     +A D E         R  +VQ+   G GT  I  +A      P+L  ++ 
Sbjct: 36  AERLAAGDGPVAFDAERASGYRYSQRAYLVQVRRRGSGTALIDPVA-----LPDL-SVIQ 89

Query: 72  DE--KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           D+    E + H    D+  L    G+R   +F T++A RL      + GL   ++ +LG 
Sbjct: 90  DKVGGVEWVLHAASQDLPCL-AELGLRPTTLFDTELAGRLLGY--ERVGLGMMVERVLGF 146

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K   ++DWS   L +  L+YAA DV  L  LR     +L   G+ D A      ++ 
Sbjct: 147 GLEKGHSAADWSTRPLPEPWLRYAALDVELLVELRDALAVELAETGKLDFAHQEFAAIVA 206


>gi|307946769|ref|ZP_07662104.1| ribonuclease D [Roseibium sp. TrichSKD4]
 gi|307770433|gb|EFO29659.1| ribonuclease D [Roseibium sp. TrichSKD4]
          Length = 330

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 4/136 (2%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           + D    K+FH  R D+ ++++   +   P+F +++A+ +   + +       + ++ G 
Sbjct: 1   MADRNVTKVFHAARQDVEIVYHLGKLIPAPLFDSQVAAMVC-GFGDSISYDQLVYKVTGA 59

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            I K+ + +DWS   L+ +QL+YA +DV HL  +       L   GRS         L  
Sbjct: 60  QIDKSSRFTDWSRRPLTQKQLEYALADVTHLRDVYQFLKANLAEQGRSHWVQDEMEILTS 119

Query: 190 RAEL---DLLGWENVD 202
                      W+ + 
Sbjct: 120 ENTYRSEPENAWKRLK 135


>gi|32473842|ref|NP_866836.1| ribonuclease D [Rhodopirellula baltica SH 1]
 gi|32444378|emb|CAD74377.1| ribonuclease D [Rhodopirellula baltica SH 1]
          Length = 493

 Score =  167 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 8/176 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE---- 76
             I  DTE +     R  LC+VQ++ G     I     G  +      +L D++ E    
Sbjct: 112 PVIGFDTEFVSEDCYRPELCLVQVAAGKHLAVIDPYTVG--DTKPFWDILTDDQIEPGSR 169

Query: 77  -KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
             I H  R +I   +   G  +  +F T++A+           L   +++L+G  + K +
Sbjct: 170 VVIAHAAREEIRFAYRYSGRPIAGLFDTQLAAGFVGIEYPA-SLATLVQKLVGQTLPKGE 228

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             ++W    L+ +QL YA  DV  L  +  +    ++ L R        + L  + 
Sbjct: 229 TRTNWRHRPLTKDQLTYALHDVTTLAEMHSKLIADVKALDRVSWLDEETDRLQKKV 284


>gi|269126003|ref|YP_003299373.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
 gi|268310961|gb|ACY97335.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
          Length = 437

 Score =  167 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 8/174 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  ++QL   G GT  I  IA    +   L   L D   
Sbjct: 64  AAGHGPVAVDAERASGYRYGQRAYLIQLRRQGAGTALIDPIAC--PDLSGLDAALADA-- 119

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R R +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 120 EMVLHAANQDLPCL-AEVGLRPRRLFDTELAGRLLGH--PKVGLGSMVENVLGFVLEKGH 176

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + DWS   L ++ L+YAA DV  L  LR     +L+R G+   A      ++ 
Sbjct: 177 SAVDWSTRPLPEDWLRYAALDVELLIELRDALHAELERAGKLQWALEEFAAILA 230


>gi|134098409|ref|YP_001104070.1| putative ribonuclease D (partial match) [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003374|ref|ZP_06561347.1| ribonuclease D [Saccharopolyspora erythraea NRRL 2338]
 gi|133911032|emb|CAM01145.1| putative ribonuclease D (partial match) [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 419

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 7/164 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
            +AVDTE         R  +VQL   G GTV +  IA      P    +   +  E + H
Sbjct: 51  PVAVDTERASGYRYSQRAYLVQLRREGAGTVLVDPIALAGSLEPLATAL---DDTEWVLH 107

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L     +R   +F T++A RL     ++  L   ++ +LG  + K   ++DW
Sbjct: 108 AASQDLPCL-AELDLRPARLFDTELAGRLAG--FDRVSLGALVERMLGYRLEKGHSAADW 164

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           S   L  + L YAA DV  L ALR     +L+R  + + A    
Sbjct: 165 SRRPLPADWLAYAALDVELLVALREAMHAELERQDKLEWAWEEF 208


>gi|282866537|ref|ZP_06275580.1| 3'-5' exonuclease [Streptomyces sp. ACTE]
 gi|282558584|gb|EFB64143.1| 3'-5' exonuclease [Streptomyces sp. ACTE]
          Length = 384

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 8/167 (4%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
              +AVD E         R  +VQL   G G+  I  +  G  +  +L   L     E I
Sbjct: 19  TGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPV--GCPDLSSLGEAL--TGTEWI 74

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L    G+    +F T++A RL      + GL   ++ LLG  + K   + 
Sbjct: 75  LHAATQDLPCL-RDIGMVPTSLFDTELAGRLAG--FPRVGLGAIVENLLGYALEKGHSAV 131

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           DWS   L D  L+YAA DV  L  LR     +L+R G+ + A    +
Sbjct: 132 DWSTRPLPDPWLRYAALDVELLVDLRDALEAELERQGKLEWALEEFD 178


>gi|145336746|ref|NP_175846.3| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana]
 gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana]
 gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana]
          Length = 637

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 4/170 (2%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+ A  A + V+  AVD E       +   C++Q+S       +          P L  
Sbjct: 125 EDLAA--ALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRE 182

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D K++K+ H    DI  L   FG+ V  +F T  ASR+ +    ++ L+  LK   G
Sbjct: 183 LFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLK--LERNSLEFLLKHYCG 240

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +  +K  Q +DW    L D   +YA  D  +L  +      +L  + + D
Sbjct: 241 VAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKED 290


>gi|297156498|gb|ADI06210.1| ribonuclease D [Streptomyces bingchenggensis BCW-1]
          Length = 424

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 70/169 (41%), Gaps = 8/169 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G GT  I  +  G  +   L   + D   
Sbjct: 56  AEGHGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV--GCPDLSGLGDAIADA-- 111

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 112 EWVLHAATQDLPCL-RDIGMLPGRLFDTELAGRLAG--FARVGLGAMVENILGYALEKGH 168

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            + DWS   L D  L YAA DV  L  LR    E+L R G+ + A    
Sbjct: 169 SAVDWSTRPLPDPWLHYAALDVELLVDLRDALEEELTRQGKLNWAHQEF 217


>gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana]
          Length = 639

 Score =  167 bits (424), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 4/170 (2%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+ A  A + V+  AVD E       +   C++Q+S       +          P L  
Sbjct: 125 EDLAA--ALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRE 182

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D K++K+ H    DI  L   FG+ V  +F T  ASR+ +    ++ L+  LK   G
Sbjct: 183 LFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLK--LERNSLEFLLKHYCG 240

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +  +K  Q +DW    L D   +YA  D  +L  +      +L  + + D
Sbjct: 241 VAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKED 290


>gi|327537477|gb|EGF24200.1| ribonuclease D [Rhodopirellula baltica WH47]
          Length = 433

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 8/176 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE---- 76
             I  DTE +     R  LC+VQ++ G     I     G  +      +L D++ E    
Sbjct: 52  PVIGFDTEFVSEDCYRPELCLVQVAAGKHLAVIDPYTVG--DTKPFWDILTDDQIEPGSR 109

Query: 77  -KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
             I H  R +I   +   G  +  +F T++A+           L   +++L+G  + K +
Sbjct: 110 VVIAHAAREEIRFAYRYSGRPIAGLFDTQLAAGFVGIEYPA-SLATLVQKLVGQTLPKGE 168

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
             ++W    L+ +QL YA  DV  L  +  +    ++ L R        + L  + 
Sbjct: 169 TRTNWRHRPLTKDQLTYALHDVTTLAEMHSKLIADVKALDRVSWLDEETDRLQKKV 224


>gi|302541899|ref|ZP_07294241.1| putative ribonuclease D [Streptomyces hygroscopicus ATCC 53653]
 gi|302459517|gb|EFL22610.1| putative ribonuclease D [Streptomyces himastatinicus ATCC 53653]
          Length = 425

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 70/169 (41%), Gaps = 8/169 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G GT  I  +  G  +   L   + D   
Sbjct: 56  AAGHGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPV--GCPDLSGLGAAVADA-- 111

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 112 EWVLHAATQDLPCL-RDIGMVPDRLFDTELAGRLAG--FARVGLGAMVENILGYALEKGH 168

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            + DWS   L +  L YAA DV  L  LR    E+L R G+ + A    
Sbjct: 169 SAVDWSTRPLPEPWLHYAALDVELLVDLRDALEEELTRQGKLEWAHQEF 217


>gi|115653109|ref|XP_001198503.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus
           purpuratus]
 gi|115960717|ref|XP_001189337.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus
           purpuratus]
          Length = 819

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 59/160 (36%), Gaps = 3/160 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           + +    IAVD E           C++Q+S  +    ++     +     L     D K 
Sbjct: 279 SLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHD-YVVDTLELRSELQMLNDAFTDPKI 337

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L    G+ V  +F T  ASR        H L   L     +   K  
Sbjct: 338 VKVFHGANMDIDWLQRDLGLYVVNMFDTHQASRSLG--FPHHSLASLLSRYCQVEADKQY 395

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q +DW    L +E L YA  D  +L  +      +L + G
Sbjct: 396 QLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRG 435


>gi|158316934|ref|YP_001509442.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
 gi|158112339|gb|ABW14536.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
          Length = 499

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 8/177 (4%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
             E  A     +A D E         R  +VQ+   G GT+ I  IA    +   +   +
Sbjct: 74  ATERLAAGTGPVAFDAERASGYRYSQRAYLVQIRRAGAGTLLIDPIA--LPDLSGVQDAV 131

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D   E + H    D+  L    G+R + +F T++A RL      + GL   ++ +LG  
Sbjct: 132 GDT--EWVLHAASQDLPCL-AELGLRPKTLFDTELAGRLLGY--ERVGLGAMVERVLGFG 186

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           + K   ++DWS   L +  L+YAA DV  L  LR Q   +L    +   A    + +
Sbjct: 187 LEKGHSAADWSNRPLPEPWLRYAALDVELLVELRDQLESELVAQNKMAFARQEFDAI 243


>gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis]
 gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis]
          Length = 552

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 3/156 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
               AVD E          +C++Q+S  D    +  +   + +   L     +    K+F
Sbjct: 269 AQEFAVDLEHHSYRSFLGFVCLMQISTRDHDFLVDTL-ELRNDLHLLNESFTNPNILKVF 327

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L   FG+ V  +F T  ASR+      +  L   LK+  G+   K  Q +D
Sbjct: 328 HGADMDVGWLQRDFGIYVVNMFDTGQASRVLA--LERFSLAFLLKKFCGVTADKQYQLAD 385

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           W    L +E ++YA  D  +L  +  +   +L R G
Sbjct: 386 WRIRPLPEEMIRYAREDTHYLLYIHDRLRNELIRTG 421


>gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana]
          Length = 642

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 4/170 (2%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+ A  A + V+  AVD E       +   C++Q+S       +          P L  
Sbjct: 125 EDLAA--ALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRE 182

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D K++K+ H    DI  L   FG+ V  +F T  ASR+ +    ++ L+  LK   G
Sbjct: 183 LFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLK--LERNSLEFLLKHYCG 240

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +  +K  Q +DW    L D   +YA  D  +L  +      +L  + + D
Sbjct: 241 VAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKED 290


>gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
          Length = 388

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 4/169 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
               D+I+VDTE+ G      ++C++Q+S       I  +    +N  +L  +  D+K  
Sbjct: 23  LSQADSISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLK--LQNLESLGNLFEDKKIL 80

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KIFH    DI  L   FG + + +  T  +SRL      Q+ L   +     I +SK +Q
Sbjct: 81  KIFHSAIDDIKALKKDFGFQFQNIADTGFSSRLLDH--EQYSLTYLVDYYHKIKLSKKEQ 138

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
            S+W    L   QLQYAA D V+L  +  +  E+L +    + A S   
Sbjct: 139 KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELIKRNLYEEAISEFE 187


>gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana]
          Length = 578

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 3/174 (1%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+    A  R V+  AVD E       +   C++Q+S       +          P L  
Sbjct: 268 DLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLRE 327

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D K++K+ H    DI  L   FG+ V  +F T  ASR+      ++ L+  L+   G
Sbjct: 328 IFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN--LERNSLEFLLQHFCG 385

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           +  +K  Q++DW    L +E  +YA  D  +L  +      +LQR+ + D  T 
Sbjct: 386 VTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTD 439


>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa]
 gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa]
          Length = 858

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 3/163 (1%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+    A  R V+  AVD E       +   C++Q+S       +  +       P L  
Sbjct: 241 DLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYLRE 300

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D  + K+ H    D+  L   FG+ +  +F T  ASR+ +    ++ L+  L    G
Sbjct: 301 VFKDPAKRKVMHGADRDVVWLQRDFGIYICNLFDTGQASRVLK--LERNSLEHLLHHFCG 358

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +  +K  Q++DW    L DE ++YA  D  +L  +       L
Sbjct: 359 VTANKEYQNADWRLRPLPDEMIRYAREDTHYLLHIYDLMRALL 401


>gi|83645396|ref|YP_433831.1| ribonuclease D [Hahella chejuensis KCTC 2396]
 gi|83633439|gb|ABC29406.1| ribonuclease D [Hahella chejuensis KCTC 2396]
          Length = 398

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 3/171 (1%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A       D +AVDTE +          ++QL        +  +     +   +  +   
Sbjct: 29  ALLRLEKTDWLAVDTEFIRGTTFYPAPALLQLYDRQCVYLVDMLK--ITDWSGVSRLFES 86

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+ H    D+ +       +   +  T++A+ L     N+ GL+  +++ LGI + 
Sbjct: 87  RDILKVVHACSEDLELFNCVGLSQPCGLIDTQVANALLDGELNE-GLQSLVRQNLGIELE 145

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           K    SDW+   L+D+Q+QYA  DVV L  L  +  E L+  G+ ++A   
Sbjct: 146 KHATRSDWTQRPLTDKQIQYAQEDVVVLWPLYQKLAEALRLSGKYEIALEE 196


>gi|108799177|ref|YP_639374.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
 gi|119868292|ref|YP_938244.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
 gi|126434785|ref|YP_001070476.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
 gi|108769596|gb|ABG08318.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
 gi|119694381|gb|ABL91454.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
 gi|126234585|gb|ABN97985.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
          Length = 428

 Score =  166 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 7/189 (3%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62
           +   E    AE  A      A+D E        +R  +VQ+   G GTV I  +  G+  
Sbjct: 41  VTTDEILAAAELLAGGHGPFAIDAERASGFRYSNRAYLVQIRREGAGTVLIDPVNHGEDP 100

Query: 63  APNLVGM--LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              +  +  ++D   E + H    D+  L    G+R   ++ T++A RL      +  L 
Sbjct: 101 TMVMAPVADVLDTD-EWVLHAADQDLPCL-AELGMRPPKLYDTELAGRLAG--LARVNLA 156

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             + ELLG+ + K   ++DWS   L D+ L YAA DV  L  LR      L   G++D A
Sbjct: 157 TMVSELLGLQLMKGHGAADWSKRPLPDDWLNYAALDVEVLLELRDAVAAVLDDQGKTDWA 216

Query: 181 TSCCNFLMD 189
                 L  
Sbjct: 217 IQEFEHLRT 225


>gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
 gi|238658291|emb|CAZ29351.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
          Length = 830

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 3/171 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              IAVD E           C++Q+S   G+  II   A + +   L  +  D K  K+F
Sbjct: 233 CKYIAVDLEHHSYRSFLGITCLIQMSTL-GSDYIIDALALRDHLSILNEVFTDPKIVKVF 291

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L   FGV V  +F T IA+RL +    +  L   L+  +GI  +K  Q +D
Sbjct: 292 HGSDSDLMWLQRDFGVYVVNLFDTGIAARLLQYG--RFSLSYLLQRFVGIYANKKYQLAD 349

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           W    L +E ++YA SD  +L  +  +   +LQ      +A      L  R
Sbjct: 350 WRIRPLPNELIEYARSDTHYLLHIASRMCRELQDRDLLSVAIERARQLCLR 400


>gi|118463563|ref|YP_882753.1| ribonuclease D [Mycobacterium avium 104]
 gi|118164850|gb|ABK65747.1| ribonuclease D [Mycobacterium avium 104]
          Length = 428

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 5/178 (2%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            A    R     AVD E        +R  ++Q+   G GTV I  ++ G      L  + 
Sbjct: 39  AARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRPVA 98

Query: 71  V-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
                 E I H    D+  L    G+R   ++ T++A RL      +  L   ++ LLG 
Sbjct: 99  EVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FERVNLATMVERLLGF 155

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            ++K   ++DWS   L  E L YAA DV  L  LR    + L   G++D A    ++L
Sbjct: 156 GLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGKTDWAAQEFDYL 213


>gi|294815677|ref|ZP_06774320.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064]
 gi|326444024|ref|ZP_08218758.1| ribonuclease D [Streptomyces clavuligerus ATCC 27064]
 gi|294328276|gb|EFG09919.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064]
          Length = 428

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 8/167 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E         R  +VQL   G G+  I  +A    +   L   L  +  E 
Sbjct: 62  GSGPVAVDAERASGYRYGQRAYLVQLRRAGAGSALIDPVAC--PDLSPLGEAL--DGAEW 117

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   +
Sbjct: 118 ILHAATQDLPCL-RDIGMAPALLFDTELAGRLAG--FPRVGLGAMVESVLGYALEKGHSA 174

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            DWS   L +  L+YAA DV  L  LR    E+L   G+ + A    
Sbjct: 175 VDWSTRPLPEPWLRYAALDVELLIDLRDALEEELAEQGKLEWARQEF 221


>gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex]
          Length = 834

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 3/154 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            IAVD E       +   C++Q+S       I  +    +  P L  +  + K  KIFH 
Sbjct: 254 VIAVDLEAHSYRSFQGLTCLMQISTSSSDYIIDTLELWDQLQP-LNEVFCNPKIVKIFHG 312

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              DI  L   FG+ V  +F T  A++L      Q  L   L+    +   K  Q +DW 
Sbjct: 313 ADMDIQWLQRDFGIYVVNLFDTYHAAKLLG--FAQLSLSFLLRHYCQVIADKQYQLADWR 370

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
              L ++ + YA  D  +L  +  +  + L+  G
Sbjct: 371 IRPLPEQMVNYAREDTHYLGYIYEKMKKDLKMKG 404


>gi|296129572|ref|YP_003636822.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
 gi|296021387|gb|ADG74623.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
          Length = 417

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 8/172 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E         R  +VQL   D GT  I  +A    +   L   LV    E 
Sbjct: 51  GTGPVAVDAERASGYRYGQRTYLVQLRREDAGTALIDPVA--LPDLSTLSAALV--GVEW 106

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+R   VF T++A+RL      + GL   + + LG+ ++K   +
Sbjct: 107 VLHAASQDLPGLAEQ-GMRPSRVFDTELAARLLGM--ERVGLAAVVADTLGLGLAKEHSA 163

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            DWS   L  E L+YAA DV  L  +R    E+L   G+++ A      +  
Sbjct: 164 VDWSTRPLPTEWLRYAALDVEVLVEVRQVLAERLAVSGKAEWARQEFEAVRT 215


>gi|227496242|ref|ZP_03926539.1| possible ribonuclease D [Actinomyces urogenitalis DSM 15434]
 gi|226834230|gb|EEH66613.1| possible ribonuclease D [Actinomyces urogenitalis DSM 15434]
          Length = 431

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 8/180 (4%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            A+C A     +AVD E            ++QL   G GT  +  + AG  +   L   L
Sbjct: 50  AADCLAAGHGPVAVDAERASGFRYGQDAYLIQLRREGAGTFLVDPVTAG--DMSALAAAL 107

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                E I H    D+  L    G+  R +F T++A+RL      + GL   ++E LG+ 
Sbjct: 108 DGP--EWILHAADQDLPCLS-ALGLHPRSLFDTELAARLLG--RARVGLGAVVEETLGLR 162

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++K   ++DWS   L    L YAA DV  L  LR+    +L+  G+++ A    ++   R
Sbjct: 163 LAKDHAAADWSTRPLPRTWLVYAALDVELLADLRVALGAELEEAGKAEWARQEFDYERTR 222


>gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group]
          Length = 877

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 6/177 (3%)

Query: 2   TTIRVHEGDIPA----ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
            T   H  D+ +        +     AVD E       +   C++Q+S       +  + 
Sbjct: 233 DTPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQISTRTEDFIVDTLK 292

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
             +     L  +  D  ++K+ H    DI  L   FG+ V  +F T  ASR+     +++
Sbjct: 293 LRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRIL--QMDRN 350

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            L+  L    G+  +K  QS+DW    L DE ++YA  D  +L  +      +L + 
Sbjct: 351 SLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKE 407


>gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 902

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 6/177 (3%)

Query: 2   TTIRVHEGDIPA----ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
            T   H  D+ +        +     AVD E       +   C++Q+S       +  + 
Sbjct: 258 DTPFTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQISTRTEDFIVDTLK 317

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
             +     L  +  D  ++K+ H    DI  L   FG+ V  +F T  ASR+     +++
Sbjct: 318 LRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRIL--QMDRN 375

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            L+  L    G+  +K  QS+DW    L DE ++YA  D  +L  +      +L + 
Sbjct: 376 SLEHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKE 432


>gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona
           intestinalis]
          Length = 647

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 59/159 (37%), Gaps = 3/159 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E       +   C++QLS       +  IA  +     L  +  +    
Sbjct: 80  LKEASEIAVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTIAL-RAELNILNQVFANPNII 138

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FG+ V  +F T  A+R       +H L   L     +   K  Q
Sbjct: 139 KVFHGADSDIIWLQRDFGIYVVNLFDTGQAARALG--LQRHSLDYLLTHYCNVQADKKYQ 196

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +DW    L  E L YA  D  +L  +       L + G
Sbjct: 197 LADWRIRPLPKEMLLYAQGDTHYLLYVYDMMRLDLVKTG 235


>gi|152965548|ref|YP_001361332.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
 gi|151360065|gb|ABS03068.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
          Length = 427

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G GT  I   A    +  +L  +L D   
Sbjct: 46  AAGTGPVAVDAERASGYRYGQRAFLVQLRREGAGTALIDPDA--LPDLSSLGAVLADA-- 101

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   +F T++ SR+      + GL   ++ELLG+ ++K  
Sbjct: 102 EWVLHAANQDLPCL-AEVGMRPTRLFDTELGSRIAG--LPRVGLGAVVEELLGLRLAKEH 158

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            + DWS   L +  L YAA DV  L  +R    E+L   G+ + A    
Sbjct: 159 SAVDWSTRPLPEPWLTYAALDVEVLVQVRDALAERLAAQGKLEWALEEF 207


>gi|332670632|ref|YP_004453640.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484]
 gi|332339670|gb|AEE46253.1| 3'-5' exonuclease [Cellulomonas fimi ATCC 484]
          Length = 424

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 78/190 (41%), Gaps = 14/190 (7%)

Query: 7   HEGDIPAECA------ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG 59
           H  D P E A            +AVD E         R  +VQL   G GT  I  +A  
Sbjct: 37  HVVDTPEELARVVAAFGAGTGPVAVDAERASGYRYGQRTYLVQLRREGAGTALIDPVA-- 94

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +   L   LV    E + H    D+  L    G+R   +F T++ +RL      + GL
Sbjct: 95  LPDLSALSEALV--GVEWVLHAASQDLPGL-TEQGMRPTRIFDTELGARLLGM--ERVGL 149

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              + + LG+ ++K   + DWS   L  E L+YAA DV  L  LR    E+L   G+++ 
Sbjct: 150 AAVVADALGLGLAKEHSAVDWSTRPLPQEWLRYAALDVEVLVPLREVLAERLAVAGKAEW 209

Query: 180 ATSCCNFLMD 189
           A      +  
Sbjct: 210 AAQEFEAVRT 219


>gi|226306331|ref|YP_002766291.1| ribonuclease D [Rhodococcus erythropolis PR4]
 gi|226185448|dbj|BAH33552.1| putative ribonuclease D [Rhodococcus erythropolis PR4]
          Length = 429

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 7/170 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E         R  ++QL   G G+  +  I   Q   P    +  +   + 
Sbjct: 45  GHGPLAVDAERASGFRYSARAYLIQLRREGAGSFLLDPIPTAQDLQPLAEAI--NP-LQW 101

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+    +F T++A RL      + GL   ++  L + + K   +
Sbjct: 102 VLHSADQDLPGL-AELGLTPAELFDTELAGRLAG--FERVGLAAIVERTLRVELRKGHGA 158

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +DWS   L D  L YAA DV  L  LR     +L+  G+ + A     ++
Sbjct: 159 ADWSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGKLEWAKEEFEYI 208


>gi|41408900|ref|NP_961736.1| hypothetical protein MAP2802 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397259|gb|AAS05119.1| hypothetical protein MAP_2802 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 428

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 5/178 (2%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            A    R     AVD E        +R  ++Q+   G GTV I  ++ G      L  + 
Sbjct: 39  AARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRPVA 98

Query: 71  V-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
                 E I H    D+  L    G+R   ++ T++A RL      +  L   ++ LLG 
Sbjct: 99  EVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FERVNLATMVERLLGF 155

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            ++K   ++DWS   L  E L YAA DV  L  LR    + L   G++D A    ++L
Sbjct: 156 GLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGKTDWAAQEFDYL 213


>gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 681

 Score =  165 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 3/170 (1%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+    A  + V+  AVD E       +   C++Q+S       +          P+L  
Sbjct: 216 DLEDLAATLQSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLWDHIGPHLRE 275

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D K++K+ H    DI  L   FG+ V  +F T  ASR+ +    +  L+  LK   G
Sbjct: 276 LFKDPKKKKVMHGADHDIIWLQRDFGIYVCNLFDTGQASRVLK--LERKSLEFLLKHYCG 333

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +   K  Q++DW    L D   +YA  D  +L  +       L  + + D
Sbjct: 334 VAADKQYQNADWRIRPLPDVMTRYAREDTHYLLYIYDVMRIDLHTMAKED 383


>gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum]
          Length = 860

 Score =  165 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 13/195 (6%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            IAVD E           C++Q+S  D    I  +A    +   L  +  D K  K+FH 
Sbjct: 279 YIAVDLEHHSYRSFLGITCLIQISTLDTDYIIDALAL-HDHLSILNEVFTDPKIVKVFHG 337

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L   FGV V  +F T +A+RL +    +  L   L+  + IN +K  Q +DW 
Sbjct: 338 SDSDLMWLQRDFGVYVVNLFDTGVAARLLQHG--RFSLSYLLQRYVNINPNKKYQLADWR 395

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS----DLATS-CCNFLMDRA----- 191
              L +E ++YA +D  +L  +  +   +LQ         + A   C             
Sbjct: 396 IRPLPNELIEYARTDTHYLLHIASRMCRELQDRNLLSVTFERARQLCLKCYTKPVFNRLG 455

Query: 192 ELDLLGWENVDIFSH 206
            LDL        FSH
Sbjct: 456 YLDLYKQTGCSSFSH 470


>gi|269794953|ref|YP_003314408.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
 gi|269097138|gb|ACZ21574.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
          Length = 437

 Score =  165 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 14/190 (7%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD--E 73
           A     +AVD E            +VQL   G GTV I  +A    +A      + D  +
Sbjct: 57  ASGNGPVAVDAERASGYRYGQSTYLVQLRREGAGTVLIDPVALPDLSA------MSDALD 110

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
             E + H    D+  L     +    VF T++A+R+      + GL   + E+LG+ ++K
Sbjct: 111 GVEWVLHAASQDLPGLAEQH-LVPSAVFDTELAARILGM--ERVGLAAVVAEVLGLGLAK 167

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN--FLMDRA 191
              + DWS   L D  L YAA DV  L  LR +  E+L+  G+++ A        L   A
Sbjct: 168 EHSAVDWSTRPLPDAWLLYAALDVEVLVELRDRMAERLEAAGKTEWARQEFEAVRLTGPA 227

Query: 192 ELDLLGWENV 201
              +  W  V
Sbjct: 228 APRVEPWRRV 237


>gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis]
          Length = 669

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 5/160 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E       +   C++QLS       +  +A  + N   L  +  + K  
Sbjct: 133 LKQESEIAVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTLAL-RANLNILNQVFTNPKIV 191

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FGV V  +F T  A+R+     ++   +  LK    +   K  Q
Sbjct: 192 KVFHGADQDIKWLQRDFGVYVVNLFDTGQAARVLELGLSR---EYLLKHYCKVESDKKYQ 248

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFT-EKLQRLG 175
            +DW    LS + L+YA  D  +L  +      + L++ G
Sbjct: 249 KADWRERPLSKDMLKYAQEDTHYLLYIYDMMKLDLLEKAG 288



 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           +F T  A+R  +       L+  LK    +   K  Q +DW    LS + L+YA  D  +
Sbjct: 430 LFDTGQAARELKLG---CSLEYLLKHYCKVESDKKFQKADWRERPLSKDMLKYAQKDTHY 486

Query: 160 LHALRLQFT-EKLQRLG 175
           L  +      + L++ G
Sbjct: 487 LLYIYDMMKLDLLEKAG 503


>gi|239983036|ref|ZP_04705560.1| ribonuclease D [Streptomyces albus J1074]
 gi|291454868|ref|ZP_06594258.1| ribonuclease D [Streptomyces albus J1074]
 gi|291357817|gb|EFE84719.1| ribonuclease D [Streptomyces albus J1074]
          Length = 348

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/177 (29%), Positives = 78/177 (44%), Gaps = 11/177 (6%)

Query: 13  AECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           AE  ARY      +AVD E         R  +VQL   G GT  I  +A    +   L  
Sbjct: 56  AETVARYAAGSGPLAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVAC--PDLSGLGE 113

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++ D   E + H    D+  L    G+  + +F T++A RL      + GL   ++ +LG
Sbjct: 114 VVEDA--EWLLHAATQDLPCL-RDIGMVPQRLFDTELAGRLAG--FARVGLGAMVENVLG 168

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
            ++ K   + DWS   L +  L+YAA DV  L  LR    E+L   G+ D A    +
Sbjct: 169 YSLEKGHSAVDWSTRPLPEPWLRYAALDVELLADLRDALEEELAGQGKLDWAHQEFD 225


>gi|325000861|ref|ZP_08121973.1| 3'-5' exonuclease [Pseudonocardia sp. P1]
          Length = 230

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 7/172 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E         R  +VQL   G G+  +  I    +  P L   L     E 
Sbjct: 30  GTGPVAVDAERASGFRYSQRAYLVQLRRAGAGSALVDPIPLRGELGP-LAAALGGP--EW 86

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L     +R   +F T++A RL      + GL   ++ LLG+++ K   +
Sbjct: 87  VLHAASQDLPCLG-ELDLRPASLFDTELAGRLAG--LPRVGLGPMVENLLGLSLEKGHGA 143

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +DWS   L ++ L YAA DV  L  LR   T  L   G+ + A      +  
Sbjct: 144 ADWSRRPLPEDWLVYAALDVEVLIELRDVLTGLLDEQGKLEWARQEFEAVRT 195


>gi|72162300|ref|YP_289957.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX]
 gi|71916032|gb|AAZ55934.1| HRDC:3'-5' exonuclease [Thermobifida fusca YX]
          Length = 420

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 10/191 (5%)

Query: 2   TTIRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58
             +   + ++    A  A     +AVD E         R  +VQL   G GT  I  +A 
Sbjct: 34  PPVVADDEELARVAAKFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVAC 93

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
              +   L   + D   E + H    D+  L     +R R +F T++A RL      + G
Sbjct: 94  --PDLSVLRDAVGDA--EMVLHAAHQDLPCL-TEVHLRPRRLFDTELAGRLLGYQ--RVG 146

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L   ++ +LG+ ++K   + DWS   L ++ L+YAA DV  L  LR     +L   G+ +
Sbjct: 147 LGAMVERVLGVRLAKEHAAVDWSTRPLPEDWLRYAALDVEVLIELRDALEAELAETGKLE 206

Query: 179 LATSCCNFLMD 189
            A      ++ 
Sbjct: 207 WARQEFAAVLA 217


>gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda
           melanoleuca]
          Length = 885

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 3/159 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     +     L   L D    K+FH  
Sbjct: 333 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSEMYILNESLTDPSIVKVFHGA 391

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK   G+  +K  Q +DW  
Sbjct: 392 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCGVESNKQYQLADWRI 449

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             L +E L YA  D  +L  +  +   +L   G      
Sbjct: 450 RPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQ 488


>gi|229491276|ref|ZP_04385102.1| ribonuclease D [Rhodococcus erythropolis SK121]
 gi|229321815|gb|EEN87610.1| ribonuclease D [Rhodococcus erythropolis SK121]
          Length = 431

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 7/170 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E         R  ++QL   G G+  +  I   Q   P L  + ++   + 
Sbjct: 47  GHGPLAVDAERASGFRYSARAYLIQLRREGAGSFLLDPIPTAQDLQP-LAEV-INP-LQW 103

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+    +F T++A RL      + GL   ++  L + + K   +
Sbjct: 104 VLHSADQDLPGL-AELGLTPAELFDTELAGRLAG--FERVGLAAIVERTLRVELRKGHGA 160

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           +DWS   L D  L YAA DV  L  LR     +L+  G+ + A     ++
Sbjct: 161 ADWSTRPLPDAWLNYAALDVEVLLELRDAMEAELESQGKLEWAKEEFEYI 210


>gi|115948726|ref|XP_001193541.1| PREDICTED: similar to exosome component 10, partial
           [Strongylocentrotus purpuratus]
          Length = 776

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 3/160 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           + +    IAVD E           C++Q+S  +    ++     +     L     D K 
Sbjct: 133 SLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHD-YVVDTLELRSELQMLNDAFTDPKI 191

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    D   L    G+ V  +F T  ASR        H L   L     +   K  
Sbjct: 192 VKVFHGANMDFDWLQRDLGLYVVNMFDTHQASRSLG--FPHHSLASLLSRYCQVEADKQY 249

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q +DW    L +E L YA  D  +L  +      +L + G
Sbjct: 250 QLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRG 289


>gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 388

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 4/169 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
               D+I++DTE+ G      ++C++Q+S       I  +     +   L  +  D+K  
Sbjct: 23  LSQADSISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQNLDG--LGNLFEDKKIL 80

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KIFH    DI  L   FG +   +  T  +SRL      Q+ L   +     I +SK +Q
Sbjct: 81  KIFHSAIDDIKALKKDFGFKFHNIADTGFSSRLLDH--EQYSLTYLVDYYHKIKLSKKEQ 138

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
            S+W    L   QLQYAA D V+L  +  +  E+L +    + A S   
Sbjct: 139 KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNLYEEAFSEFE 187


>gi|111023812|ref|YP_706784.1| ribonuclease III [Rhodococcus jostii RHA1]
 gi|110823342|gb|ABG98626.1| probable ribonuclease III [Rhodococcus jostii RHA1]
          Length = 429

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            +     +AVD E         R  +VQL   G GTV +  I      AP L  + ++  
Sbjct: 48  LSEGTGPLAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAP-LAEV-INP- 104

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
            E I H    D+  L    G+    +F T++A RL      + GL   ++  LG+ + K 
Sbjct: 105 LEWILHSADQDLPGL-AEIGLAPATLFDTELAGRLAG--FERVGLAAIVERTLGLELRKG 161

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
             ++DWS   L D  L YAA DV  L  LR     +L   G+S+ A      +
Sbjct: 162 HGAADWSKRPLPDSWLNYAALDVEVLVELRNVMAAELDEQGKSEWAAQEFEHI 214


>gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda
           melanoleuca]
          Length = 887

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 3/159 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     +     L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSEMYILNESLTDPSIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK   G+  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCGVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             L +E L YA  D  +L  +  +   +L   G      
Sbjct: 427 RPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQ 465


>gi|288917119|ref|ZP_06411489.1| 3'-5' exonuclease [Frankia sp. EUN1f]
 gi|288351488|gb|EFC85695.1| 3'-5' exonuclease [Frankia sp. EUN1f]
          Length = 525

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 8/177 (4%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70
             E  A     IA D E         R  +VQ+   G GT+ I  +A    +  +L  ++
Sbjct: 70  ATERLAAGTGPIAFDAERASGYRYSQRAYLVQIRRQGAGTILIDPVA--LPDLTSLQEVV 127

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                E + H    D+  L    G+    +F T++A RL      + GL   ++ +LG  
Sbjct: 128 G--PTEWVLHAASQDLPCL-AELGLHPTSLFDTELAGRLLGY--ERVGLGAMVERVLGFA 182

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           + K   ++DWS   L +  L+YAA DV  L  LR +   +L    + D A      +
Sbjct: 183 LEKGHSAADWSTRPLPEPWLRYAALDVELLVELRDRLEAELVERDKIDFARQEFAAI 239


>gi|54025710|ref|YP_119952.1| putative RNase D [Nocardia farcinica IFM 10152]
 gi|54017218|dbj|BAD58588.1| putative RNase D [Nocardia farcinica IFM 10152]
          Length = 424

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 7/172 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +AVD E         R  ++QL   G GT  +  I       P    +      E 
Sbjct: 47  GTGPLAVDAERASGFRYSARAYLIQLRRAGAGTFLVDPIPVADALGPLAEAI---NDLEW 103

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+R   +F T++  RL      + GL   ++ LLG  + K   +
Sbjct: 104 VLHSADQDLPGL-AELGLRPARLFDTELGGRLAG--FERVGLAAMVERLLGRTLRKGHGA 160

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +DWS   L  E L YAA DV  L  LR     +LQR G+SD A      +  
Sbjct: 161 ADWSTRPLPAEWLNYAALDVELLLELRDAVAAELQRQGKSDWAAQEFEHVRT 212


>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 857

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 3/163 (1%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+    A  R V+  AVD E       +   C++Q+S       I  +       P L  
Sbjct: 237 DLKELAAKLRAVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIIDTLKLRIHVGPYLRE 296

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D  + K+ H    DI  L   FG+ V  +F T  ASR+ +    ++ L+  L+   G
Sbjct: 297 VFKDPTKRKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLK--LERNSLEHLLRHFCG 354

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           I  +K  Q++DW    L+DE L+Y   D  +L  +       L
Sbjct: 355 ITANKEYQNADWRLRPLTDEMLRYGREDTHYLLYIYDLMRIML 397


>gi|284031654|ref|YP_003381585.1| 3'-5' exonuclease [Kribbella flavida DSM 17836]
 gi|283810947|gb|ADB32786.1| 3'-5' exonuclease [Kribbella flavida DSM 17836]
          Length = 422

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 8/177 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E        +AVD E         R  +VQL   G G+  +  I  G  +   L   ++D
Sbjct: 45  EAFGHGTGPVAVDAERASGYRYSHRAYLVQLRREGAGSALVDPIPFG--DLSVLGDAIID 102

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
              E I H    D+A L    G+  R VF T++A RL      + GL   + E+LG  + 
Sbjct: 103 A--EWIIHAANQDLACL-AEVGMVPRQVFDTELAGRLLGY--PKVGLASLVSEVLGYRMR 157

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           K   ++DWS   L    L YAA DV  L  LR    ++L+R G+ + A      ++ 
Sbjct: 158 KEHSAADWSTRPLPGPWLVYAALDVEMLIELRDAIEQELRREGKWEWAQQEFAAILS 214


>gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 [Equus caballus]
          Length = 886

 Score =  164 bits (417), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 60/159 (37%), Gaps = 3/159 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L     D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRREDF-IVDTLELRSDMYILNESFTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    +  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKRYCSVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             L +E L YA  D  +L  +  +   +L   G      
Sbjct: 427 RPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNDQPVQ 465


>gi|73950874|ref|XP_535408.2| PREDICTED: similar to exosome component 10 isoform 1 [Canis
           familiaris]
          Length = 1012

 Score =  164 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 3/159 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 436 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPTIVKVFHGA 494

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    +  +K  Q +DW  
Sbjct: 495 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCSVESNKQYQLADWRI 552

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             L +E L YA  D  +L  +  +   +L   G      
Sbjct: 553 RPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQ 591


>gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 406

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 5/178 (2%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           D+ A    R    +++DTE+ G      ++C++Q++       I  +     N   L  +
Sbjct: 17  DL-ALINLRQSKIMSIDTESSGYYTYYPKVCLIQINSNGKNYLIDPLK--ITNLSALGPL 73

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             D    KIFH  + DI  L   FG +      T I+SRL     +       ++    +
Sbjct: 74  FEDPNILKIFHSAQDDIKALKRDFGFKFVNTADTMISSRLLSLEQSSLSF--VVEHYHKV 131

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            +SK +Q S+W    L  +QL+YAA D  +L ++ L+  E L+R    D A S  +F+
Sbjct: 132 TLSKVEQKSNWEIRPLQKQQLKYAALDTAYLESIWLKMEEDLKRRSLYDEAKSEFDFI 189


>gi|182412681|ref|YP_001817747.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
 gi|177839895|gb|ACB74147.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
          Length = 391

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 6/174 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           P   A   VD +A+DTE   +   R R+C++Q   G     +  +A        L   L 
Sbjct: 36  PLLAALDRVDEVALDTEADNMFHYRTRVCLLQFLVGREIFLVDVLAP--LPFEGLWARLA 93

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           ++    I H   FD+ +L      R + +F T +A++L      + GL   L++  G+ +
Sbjct: 94  EKNL--IMHGSDFDLRLLHDFCRFRPKSIFDTMLAAQLIN--RPRIGLASLLEDHFGVKL 149

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           SK  Q ++WS   L+ + L YAA DV HL ALR   T +L +LGR +     C 
Sbjct: 150 SKESQKANWSKRPLTKKMLDYAALDVFHLPALRDILTRELTKLGRIEWLRQQCR 203


>gi|293347807|ref|XP_002726702.1| PREDICTED: rCG30986-like isoform 1 [Rattus norvegicus]
 gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus]
          Length = 885

 Score =  164 bits (415), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 3/159 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             L +E L YA  D  +L  +  +   +L   G      
Sbjct: 427 RPLPEEMLNYARDDTHYLLYIYDRMRLELWERGNDQPVQ 465


>gi|293347809|ref|XP_002726703.1| PREDICTED: rCG30986-like isoform 2 [Rattus norvegicus]
          Length = 860

 Score =  164 bits (415), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 3/159 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             L +E L YA  D  +L  +  +   +L   G      
Sbjct: 427 RPLPEEMLNYARDDTHYLLYIYDRMRLELWERGNDQPVQ 465


>gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta]
          Length = 884

 Score =  164 bits (415), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLELWERG 459


>gi|169630071|ref|YP_001703720.1| hypothetical protein MAB_2988 [Mycobacterium abscessus ATCC 19977]
 gi|169242038|emb|CAM63066.1| Conserved hypothetical protein (putative exonuclease)
           [Mycobacterium abscessus]
          Length = 400

 Score =  164 bits (415), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 7/186 (3%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQK 61
           T    E    A+         AVD E        +R  ++Q+   G GTV +        
Sbjct: 24  TASTDEIRAAAQRLISGTGPFAVDAERASGFRYSNRAYLIQIRRRGAGTVLLDPTNVPGS 83

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
             P +  +  D   E I H    D+  L     ++   ++ T++A RL      +  L  
Sbjct: 84  LGPIVDALGAD---EWILHAADQDLPCL-AELAMKPPSLYDTELAGRLAG--FEKVNLAS 137

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            +  LLG+ ++K   ++DWS   L D+ L YAA DV  L  LR +  E L   G+++ A 
Sbjct: 138 MVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVELRDKIAEVLAEQGKTEWAR 197

Query: 182 SCCNFL 187
                L
Sbjct: 198 QEFEHL 203


>gi|320007817|gb|ADW02667.1| 3'-5' exonuclease [Streptomyces flavogriseus ATCC 33331]
          Length = 424

 Score =  164 bits (415), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 8/169 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A     +AVD E         R  +VQL   G G+  I  +  G  +   L   L     
Sbjct: 56  AAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPV--GCPDLSALGEAL--TGS 111

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 112 EWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAG--FPRVGLGAIVENVLGYALEKGH 168

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            + DWS   L D  L+YAA DV  L  LR    E+L R G+   A    
Sbjct: 169 SAVDWSTRPLPDPWLRYAALDVELLVDLRNALEEELDRQGKLGWALEEF 217


>gi|332250403|ref|XP_003274341.1| PREDICTED: exosome component 10 [Nomascus leucogenys]
          Length = 912

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLELWERG 483


>gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 2/162 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            + V+  AVD E       +   C++Q+S       I  +         L  +  D  + 
Sbjct: 49  LKDVNEFAVDLEHNQYRSFQGLTCLMQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKR 108

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L   F V V  +F T  ASR+      ++ L+  L    G+  +K  Q
Sbjct: 109 KVMHGADRDIMWLQRDFRVYVCNLFDTGQASRVL--QMERNSLEHLLHHFCGVTANKIYQ 166

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           ++DW +  LSDE ++YA  D  +L  +      +LQR   S+
Sbjct: 167 NADWRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQRESTSE 208


>gi|313233556|emb|CBY09728.1| unnamed protein product [Oikopleura dioica]
          Length = 790

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    +AVD E       +   C+VQ+S       +  +A  +     L  +  + K  
Sbjct: 272 LREESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMY-KLNEVFANPKIV 330

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KIFH  R D+  L   FGV V  +F T  A++       +  L   L+    I + K  Q
Sbjct: 331 KIFHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLD--LAKKSLDYLLQHYCKIRLDKRFQ 388

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    +    L+YA  D  +L  +  +    L++L
Sbjct: 389 LADWRMRPIPPNMLRYARQDTHYLLYVYDRLRADLEKL 426


>gi|111221533|ref|YP_712327.1| putative ribonuclease D [Frankia alni ACN14a]
 gi|111149065|emb|CAJ60747.1| Putative ribonuclease D (partial match) [Frankia alni ACN14a]
          Length = 545

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 8/172 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               +A D E         R  +VQ+   G G++ I  +  G  +   +   + D   E 
Sbjct: 61  GTGPVAFDAERASGYRYSQRAYLVQIRRRGAGSLLIDPVPLG--DLTVIQEAVGDA--EW 116

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    D+  L    G+R   +F T++A RL      + GL   ++ +LG  + K   +
Sbjct: 117 VLHAASQDLPCL-AELGLRPALLFDTELAGRLLGY--ERVGLGMMVERVLGYGLEKGHSA 173

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +DWS   L +  L+YAA DV  L  LR     +L    + + A      ++ 
Sbjct: 174 ADWSTRPLPEPWLRYAALDVELLVELRDALEAELIEQDKLEFARQEFAAIVA 225


>gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta]
          Length = 884

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLELWERG 483


>gi|226366248|ref|YP_002784031.1| ribonuclease [Rhodococcus opacus B4]
 gi|226244738|dbj|BAH55086.1| putative ribonuclease [Rhodococcus opacus B4]
          Length = 428

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 7/173 (4%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            +     +AVD E         R  +VQL   G GTV +  I      AP L  + ++  
Sbjct: 48  LSEGTGPLAVDAERASGFRYSARAYLVQLRREGAGTVLLDPIPTAADLAP-LAEV-INP- 104

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
            E I H    D+  L    G+    +F T++A RL      + GL   ++  LG  + K 
Sbjct: 105 LEWILHSADQDLPGL-AEIGLAPATLFDTELAGRLAG--FERVGLAAIVERTLGFELRKG 161

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
             ++DWS   L D  L YAA DV  L  LR     +L   G+SD A      +
Sbjct: 162 HGAADWSKRPLPDTWLNYAALDVEVLVELRNAMAAELGEQGKSDWAAQEFEHI 214


>gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca]
          Length = 834

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 3/159 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     +     L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSEMYILNESLTDPSIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK   G+  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCGVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             L +E L YA  D  +L  +  +   +L   G      
Sbjct: 427 RPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQ 465


>gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus]
          Length = 864

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 312 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 370

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 371 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 428

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 429 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 461


>gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus]
          Length = 887

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459


>gi|315080608|gb|EFT52584.1| 3'-5' exonuclease [Propionibacterium acnes HL078PA1]
          Length = 412

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G GT  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++ASRL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELASRLLN--LPRVSLGPMVERYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203


>gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus]
 gi|123226356|emb|CAM23944.1| exosome component 10 [Mus musculus]
 gi|123248912|emb|CAM21194.1| exosome component 10 [Mus musculus]
          Length = 862

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459


>gi|313801939|gb|EFS43173.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA2]
          Length = 412

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G GT  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDMPCLAMD-GLRPDALFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203


>gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus]
 gi|123226357|emb|CAM23945.1| exosome component 10 [Mus musculus]
 gi|123248913|emb|CAM21195.1| exosome component 10 [Mus musculus]
          Length = 887

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459


>gi|289706235|ref|ZP_06502598.1| putative ribonuclease D [Micrococcus luteus SK58]
 gi|289557074|gb|EFD50402.1| putative ribonuclease D [Micrococcus luteus SK58]
          Length = 416

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 6/170 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              +AVD E    +    R  +VQL      + ++   A    AP L   L     E I 
Sbjct: 45  TGPVAVDAERASGIRYGQRAMLVQLKREGAGIWLVDPEALDGLAP-LQEALA--GVEWIL 101

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+R   +F T++A+R+      + GL   L+ELLG+ ++K   ++D
Sbjct: 102 HAASQDLPCLAEQ-GLRPDRLFDTELAARVAG--LPRVGLAAVLEELLGVTLAKEHSAAD 158

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           WS   L +  L YAA DV  L  LR     +L+  G+   A      +  
Sbjct: 159 WSVRPLPEAMLAYAALDVELLVPLREALIARLEADGKLAWAEQEFEHVRT 208


>gi|8928261|sp|P56960|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen
           PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma
           autoantigen 2 homolog
 gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated
           autoantigen homolog [Mus musculus]
 gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus]
 gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus]
          Length = 887

 Score =  163 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459


>gi|254776017|ref|ZP_05217533.1| ribonuclease D [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 416

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 5/178 (2%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            A    R     AVD E        +R  ++Q+   G GTV I  ++ G      L  + 
Sbjct: 27  AARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRPVA 86

Query: 71  V-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
                 E I H    D+  L    G+R   ++ T++A RL      +  L   ++ LLG 
Sbjct: 87  EVLGSDEWILHSADQDLPCL-AEVGMRPPALYDTELAGRLAG--FERVNLATMVERLLGF 143

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            ++K   ++DWS   L  E L YAA DV  L  LR    + L   G++D A    ++L
Sbjct: 144 GLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAGQGKTDWAAQEFDYL 201


>gi|187466046|emb|CAQ52093.1| exosome component 10 [Mus musculus]
 gi|187466070|emb|CAQ51624.1| exosome component 10 [Mus musculus]
          Length = 861

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 309 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 367

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 368 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 425

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 426 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 458


>gi|187466045|emb|CAQ52092.1| exosome component 10 [Mus musculus]
 gi|187466069|emb|CAQ51623.1| exosome component 10 [Mus musculus]
          Length = 886

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 309 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 367

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 368 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 425

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 426 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 458


>gi|87307951|ref|ZP_01090094.1| ribonuclease D [Blastopirellula marina DSM 3645]
 gi|87289565|gb|EAQ81456.1| ribonuclease D [Blastopirellula marina DSM 3645]
          Length = 392

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 8   EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   C   R    I  DTE +        LC+VQ++ G+    +        +    
Sbjct: 9   QSQLTELCDRLRSESHIYFDTEFVSEDVYLPDLCLVQIAAGEILAIVDP--KRIDDMNVF 66

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             ++       + H GR +    +   G     +F T+IA  L           + +  L
Sbjct: 67  WELIAGGDHVSVVHSGREEFLFCYRATGKAPANLFDTQIAGGLIGMEYPA-SFGNLILRL 125

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           L   + K +  +DW    LS  Q++YA +DV +L     +  ++L +L R+       
Sbjct: 126 LDEKLPKGETRTDWRVRPLSSRQIEYALNDVAYLGPAAQELEKELTKLDRTSWLQEEM 183


>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa]
 gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa]
          Length = 855

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 3/163 (1%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+    A  R V+  AVD E       +   C++Q+S       +  +       P L  
Sbjct: 240 DLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYLRE 299

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  D  + K+ H    DI  L   FG+ +  +F T  ASR+ +    ++ L+  L    G
Sbjct: 300 VFKDPAKRKVMHGADRDIVWLQRDFGIYICNLFDTGQASRVLK--LERNSLEYLLHHFCG 357

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +   K  Q+++W    L DE ++YA  D  +L  +       L
Sbjct: 358 VTAKKEYQNAEWRLRPLPDEMIRYAREDTHYLLHIYDLMRALL 400


>gi|320167779|gb|EFW44678.1| exosome component 10 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 945

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 6/158 (3%)

Query: 17  ARYVDAI---AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           AR + ++   A+D E       +  +C++Q+S     V I  +A  + +  +L  +  + 
Sbjct: 306 ARRLSSVSEFAIDLEHHSYRSLQGFVCLMQVSTRTEDVVIDTLAV-RSSMHHLREVFANP 364

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              K+FH    D+  L + FG+    +F T  A+R+       + L   L+    +   K
Sbjct: 365 NILKVFHGADMDVVWLQHDFGIYTINMFDTGQAARVLELG--SYSLAHLLRYFCNVTADK 422

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             Q +DW    +  E LQYA  D  +L  +  +   +L
Sbjct: 423 KYQLADWRIRPIPAEMLQYAREDTHYLLYIYDRLRNEL 460


>gi|254443317|ref|ZP_05056793.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257625|gb|EDY81933.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 370

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 11/194 (5%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+    A +    IA+D+E   L     +LC++QL   DGT+ ++ + A   +      
Sbjct: 16  EDLCDHLAKQA--EIALDSEADNLHHFETKLCLLQLRF-DGTIYLLDVTA-DLDLDRFWE 71

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L       I H   FD+ +     G   + +F + +AS+L      + GL   L+E  G
Sbjct: 72  ILS--GLHLIMHGSDFDLRLFEEFCGFEAKSLFDSMLASQLLG--IKRIGLAALLEENFG 127

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           + I K  Q SDWS   L+ + L+YAA+DV++LH LR +   ++  LGR +     C+  +
Sbjct: 128 VKIPKDSQKSDWSQRPLTPKMLKYAATDVLYLHELRDKLMARIDELGRGEWLKQRCDNQI 187

Query: 189 DRAELDLLGWENVD 202
             A+    G+   D
Sbjct: 188 RIAK---SGFPRND 198


>gi|256825389|ref|YP_003149349.1| ribonuclease D [Kytococcus sedentarius DSM 20547]
 gi|256688782|gb|ACV06584.1| ribonuclease D [Kytococcus sedentarius DSM 20547]
          Length = 431

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 81/208 (38%), Gaps = 21/208 (10%)

Query: 1   MTTIRVHEG-DIPAECA------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSP- 46
           M T   H   D+P   A            A     +A+D E        +   +VQL   
Sbjct: 1   MPTPLTHPAEDLPPVVADDAGLAEAAARVAAGTGPVAIDAERASGHRYGNDAYLVQLRRQ 60

Query: 47  GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           G GT+ +  +  G  +   L   L     E + H    D+  L    G+R R +F T++ 
Sbjct: 61  GAGTLLVDPM--GITDMSPLAEALDGP--EWVLHAATQDLPCL-ADLGLRPRSLFDTELG 115

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
            RL      + GL   ++  L + ++K   + DWS   L  + L YAA DV  L  +R  
Sbjct: 116 GRLVG--LPRVGLAAVVEHYLDLTLAKEHSAVDWSTRPLPTDWLVYAALDVEVLVEVRDA 173

Query: 167 FTEKLQRLGRSDLATSCCNFLMDRAELD 194
               L+RLGR + A    + L      D
Sbjct: 174 MEADLERLGRDEWARQEFDALTSFTAKD 201


>gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis]
          Length = 827

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 3/154 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A AVD E           C++Q+S  D    +       +    L    VD    K+ H 
Sbjct: 274 AFAVDLEHNSYRSYYGLTCLLQISTRDTDYIVDPFPIWHEMY-ILNEPFVDPNIVKVMHG 332

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              DI  L   FG+ V  +F T  A  +      Q  LK  +KEL+G+N+ K+ Q++DW 
Sbjct: 333 SSQDIQWLQRDFGIYVVNLFDTYHAMEVLEM--PQRSLKFLVKELVGVNLDKSYQTADWR 390

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
              L  + L YA SD  +L         +L   G
Sbjct: 391 IRPLGSKMLAYARSDSHYLLYCWDVLRNQLLNRG 424


>gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus]
          Length = 910

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 3/156 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
               A+D E           C++Q+S       II     + +   L     D    K+ 
Sbjct: 325 CKEFALDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMSILNETFTDPAIVKVL 383

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L   FG+ +  +F T  A+RL      +H L   LK    ++  K  Q +D
Sbjct: 384 HGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLG--KHSLDHLLKLYCSVDADKQYQLAD 441

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           W    L +E +QYA  D  +L  +  +  E L   G
Sbjct: 442 WRIRPLPEEMIQYARDDTHYLLYIYDKMREALWERG 477


>gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
 gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
          Length = 832

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 3/179 (1%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +T +   E  +            AVD E       +   C++Q+S  D    +  +A  +
Sbjct: 273 LTLVTTLEELMDMNDKLTMCSEFAVDLEHHSYRSFQGFTCLMQVSTRDHDYIVDTLAL-R 331

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +   L     D K  K+FH    DI  L   FGV V  +F T  AS +      +H L 
Sbjct: 332 ADLHVLNDTFTDPKVVKVFHGADMDIQWLQRDFGVYVVNMFDTGQASHVLG--LPRHSLA 389

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             LK    +   K  Q +DW    L  E  QYA  D  +L  +      +L   G ++ 
Sbjct: 390 YLLKTYCDVEPDKKYQLADWRIRPLPSEMTQYAREDTHYLLHIYDCMRSELLDRGNNEA 448


>gi|313827523|gb|EFS65237.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA2]
 gi|315108646|gb|EFT80622.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA2]
          Length = 412

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G GT  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDLPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203


>gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus]
          Length = 916

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 313 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 371

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 372 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 429

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 430 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 462


>gi|297561776|ref|YP_003680750.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846224|gb|ADH68244.1| 3'-5' exonuclease [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 421

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 8/176 (4%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
             +     +AVD E         R  +VQL   G G+  I  IA    +   L   + D 
Sbjct: 49  ALSAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPIAC--PDLSALNDAVGDA 106

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           +   + H    D+  L     +R R +F T++A RL      + GL   ++ LL + ++K
Sbjct: 107 EV--VLHAAHQDLPCLS-EINLRPRSLFDTELAGRLLGYQ--RVGLGFMVERLLHLRLAK 161

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
              + DWS   L ++ L+YAA DV  L  LR     +L+  G+ + A      ++ 
Sbjct: 162 EHSAVDWSQRPLPEDWLRYAALDVEILIDLRDSLEVELEETGKLEWAREEFAAVLS 217


>gi|311898875|dbj|BAJ31283.1| putative ribonuclease D [Kitasatospora setae KM-6054]
          Length = 411

 Score =  162 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 10/187 (5%)

Query: 1   MTTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIA 57
           +  +   +  + A   A       +AVD E         R  ++QL   G GT  I  IA
Sbjct: 24  LPPVVSDDAALAAVVEAFRGGTGPVAVDAERASGYRYGQRAYLIQLRRQGAGTALIDPIA 83

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
               +   L   L D   E + H    D+  LF   G+    +F T++A RL      + 
Sbjct: 84  C--PDLTGLNAALADT--EWVVHAATQDLPCLF-EVGMHPGVLFDTELAGRLAG--FPRV 136

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           GL    + +LG++++K   + DWS   L +  L+YAA DV  L  LR     +L R G+ 
Sbjct: 137 GLGPMTENVLGLSLAKEHSAVDWSTRPLPEPWLRYAALDVEVLVDLRDALEAELDRQGKL 196

Query: 178 DLATSCC 184
           D A    
Sbjct: 197 DWAHQEF 203


>gi|119945380|ref|YP_943060.1| ribonuclease D [Psychromonas ingrahamii 37]
 gi|119863984|gb|ABM03461.1| ribonuclease D [Psychromonas ingrahamii 37]
          Length = 369

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 5/186 (2%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I      +    A      I++DTE +        L ++Q+S       I  IA G  + 
Sbjct: 5   IITTTAQLHDFIATLDGSPISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAVG--DL 62

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
            +    + ++    I H    D+ ++    G     +F T+IA           G    +
Sbjct: 63  SSFWQAIDNKNI--ILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMGA-SLGYAKMV 119

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           + L  + + K +  +DW A  LS++Q+ YA  DV++L     +  ++L+           
Sbjct: 120 ETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCLEKLQQQLENKKMFPFFEQE 179

Query: 184 CNFLMD 189
           C  ++ 
Sbjct: 180 CQSVLA 185


>gi|88856896|ref|ZP_01131548.1| ribonuclease [marine actinobacterium PHSC20C1]
 gi|88813864|gb|EAR23734.1| ribonuclease [marine actinobacterium PHSC20C1]
          Length = 418

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 8/178 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A     I +D E         R  ++Q+   G GT      A G  +   L  ++ +
Sbjct: 38  EAIAAGNGPIGIDAERASGYRYSQRAYLIQIFRRGAGTFLFDPPAIG--DFSELNDVIAN 95

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           E  E I H    D+  L    G+    +F T++ +R+      + GL   ++  LGI+++
Sbjct: 96  E--EWILHAATQDLTCL-REVGLYPTRLFDTELGARIAG--LPRVGLGTVVEHFLGIHLA 150

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           K   S+DWS   L    L YAA DV  L  LR    E L    + D+A    + ++ R
Sbjct: 151 KEHSSADWSTRPLPQAWLVYAALDVELLVDLREALGELLDSADKHDIAQQEFDSVLAR 208


>gi|117928598|ref|YP_873149.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117649061|gb|ABK53163.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 416

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 72/170 (42%), Gaps = 8/170 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
             +AVD E         R  +VQL  PG GT  I  +     N   +   L     E I 
Sbjct: 42  GPVAVDAERASAYRYGHRAYLVQLRRPGAGTFLIDPLPFA--NLRPVHEALS--TAEWIV 97

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+R   +F T++A+RL      + GL   ++ELLG  ++K     D
Sbjct: 98  HAAAQDLPCL-AELGLRPARLFDTELAARLAGY--PRVGLAAMVEELLGFRLNKDHARVD 154

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           WS   L +  L+YAA DV  L  LR     +LQR G+   A      +  
Sbjct: 155 WSRRPLPESWLRYAALDVEVLVELREILHTELQRQGKLRWAVEEFEHVRT 204


>gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
 gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
          Length = 422

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 11/186 (5%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
               + +D E        +R  ++QL      + +I         P +  +   E  E I
Sbjct: 50  GTGPVGIDAERASGYRYSNRAYLIQLRREGSGIWLIDPIELTTMQPLVEAL---EGTEWI 106

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L    G+    +F T++A RL      + GL   ++ +LG  + K   ++
Sbjct: 107 LHAATQDLPCLS-DLGLHPAALFDTELAGRLLGY--PRVGLGTLVETVLGFTMLKEHSAA 163

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---MDRAELDL 195
           DWS   L D  L+YAA DV  L  LR     +L   G+   A    ++L         D 
Sbjct: 164 DWSTRPLPDAWLEYAALDVEVLVELREALAAELVAQGKDAWARQEFDWLRGFEAPVRTD- 222

Query: 196 LGWENV 201
             W   
Sbjct: 223 -AWRRT 227


>gi|328754581|gb|EGF68197.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA2]
          Length = 412

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G GT  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203


>gi|289425030|ref|ZP_06426807.1| 3'-5' exonuclease [Propionibacterium acnes SK187]
 gi|289154008|gb|EFD02696.1| 3'-5' exonuclease [Propionibacterium acnes SK187]
 gi|313792108|gb|EFS40209.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA1]
 gi|313838766|gb|EFS76480.1| 3'-5' exonuclease [Propionibacterium acnes HL086PA1]
 gi|314962767|gb|EFT06867.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA1]
 gi|315077982|gb|EFT50033.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA2]
 gi|327453174|gb|EGE99828.1| 3'-5' exonuclease [Propionibacterium acnes HL092PA1]
          Length = 412

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G GT  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203


>gi|50842545|ref|YP_055772.1| ribonuclease D [Propionibacterium acnes KPA171202]
 gi|295130624|ref|YP_003581287.1| 3'-5' exonuclease [Propionibacterium acnes SK137]
 gi|50840147|gb|AAT82814.1| ribonuclease D [Propionibacterium acnes KPA171202]
 gi|291375251|gb|ADD99105.1| 3'-5' exonuclease [Propionibacterium acnes SK137]
 gi|313764422|gb|EFS35786.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA1]
 gi|313772196|gb|EFS38162.1| 3'-5' exonuclease [Propionibacterium acnes HL074PA1]
 gi|313807552|gb|EFS46039.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA2]
 gi|313810061|gb|EFS47782.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA1]
 gi|313815960|gb|EFS53674.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA1]
 gi|313818593|gb|EFS56307.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA2]
 gi|313820361|gb|EFS58075.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA1]
 gi|313822834|gb|EFS60548.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA2]
 gi|313825235|gb|EFS62949.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA1]
 gi|313830390|gb|EFS68104.1| 3'-5' exonuclease [Propionibacterium acnes HL007PA1]
 gi|313833761|gb|EFS71475.1| 3'-5' exonuclease [Propionibacterium acnes HL056PA1]
 gi|314915414|gb|EFS79245.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA4]
 gi|314920115|gb|EFS83946.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA3]
 gi|314925249|gb|EFS89080.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA3]
 gi|314931637|gb|EFS95468.1| 3'-5' exonuclease [Propionibacterium acnes HL067PA1]
 gi|314955692|gb|EFT00094.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA1]
 gi|314958090|gb|EFT02193.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA1]
 gi|314959968|gb|EFT04070.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA2]
 gi|314967866|gb|EFT11965.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA1]
 gi|314973393|gb|EFT17489.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA1]
 gi|314976071|gb|EFT20166.1| 3'-5' exonuclease [Propionibacterium acnes HL045PA1]
 gi|314978539|gb|EFT22633.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA2]
 gi|314983908|gb|EFT28000.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA1]
 gi|314989898|gb|EFT33989.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA3]
 gi|315084278|gb|EFT56254.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA2]
 gi|315085621|gb|EFT57597.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA3]
 gi|315088327|gb|EFT60303.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA1]
 gi|315095938|gb|EFT67914.1| 3'-5' exonuclease [Propionibacterium acnes HL038PA1]
 gi|315098569|gb|EFT70545.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA2]
 gi|315101430|gb|EFT73406.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA1]
 gi|315105619|gb|EFT77595.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA1]
 gi|327326219|gb|EGE68009.1| putative ribonuclease D [Propionibacterium acnes HL096PA2]
 gi|327330288|gb|EGE72037.1| putative ribonuclease D [Propionibacterium acnes HL097PA1]
 gi|327331905|gb|EGE73642.1| putative ribonuclease D [Propionibacterium acnes HL096PA3]
 gi|327443108|gb|EGE89762.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA2]
 gi|327445890|gb|EGE92544.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA2]
 gi|327448129|gb|EGE94783.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA1]
 gi|327450750|gb|EGE97404.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA3]
 gi|327453907|gb|EGF00562.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA2]
 gi|328753437|gb|EGF67053.1| 3'-5' exonuclease [Propionibacterium acnes HL020PA1]
 gi|328754168|gb|EGF67784.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA1]
 gi|328760820|gb|EGF74386.1| putative ribonuclease D [Propionibacterium acnes HL099PA1]
 gi|332675465|gb|AEE72281.1| ribonuclease D [Propionibacterium acnes 266]
          Length = 412

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G GT  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203


>gi|325120384|emb|CBZ55938.1| Ribonuclease D, related [Neospora caninum Liverpool]
          Length = 1387

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 2/161 (1%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           +  E +      +A+D E       R   C++QLS  +    I      + +   L  + 
Sbjct: 470 LVDELSTGAHPLVAIDLEHHSFHSYRGFTCLLQLSTREKDYLIDPFPLFE-HLHVLNAIT 528

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            + K  KIFH    DI  L   F V V  +F T +A+R          L + L    G+ 
Sbjct: 529 ANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPGGA-SLANLLHTYCGVE 587

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +K  Q +DW    L+ E   YA SD  +L  +      +L
Sbjct: 588 ANKQYQLADWRRRPLTPEMEAYARSDTHYLPFIFDVMKNQL 628


>gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo]
          Length = 888

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 3/152 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
               A+D E           C++Q+S       II     + +   L     D    K+ 
Sbjct: 303 CKEFALDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMSILNETFTDPAIVKVL 361

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L   FG+ +  +F T  A+RL      +H L   LK    ++  K  Q +D
Sbjct: 362 HGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLG--KHSLDHLLKLYCSVDADKQYQLAD 419

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           W    L +E +QYA  D  +L  +  +  E L
Sbjct: 420 WRIRPLPEEMIQYARDDTHYLLYIYDKMREAL 451


>gi|314918304|gb|EFS82135.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA1]
          Length = 412

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G GT  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203


>gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus]
          Length = 885

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 3/159 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L +    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRMEDF-IIDTLELRSDMYILNESLTNPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    +  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             L +E L YA  D  +L  +  +   +L   G S    
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLELWDRGNSQPVQ 465


>gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus]
          Length = 860

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 3/159 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L +    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRMEDF-IIDTLELRSDMYILNESLTNPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    +  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             L +E L YA  D  +L  +  +   +L   G S    
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLELWDRGNSQPVQ 465


>gi|170112858|ref|XP_001887630.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164637532|gb|EDR01817.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 854

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 63/168 (37%), Gaps = 3/168 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I   +         +    IAVD E          LC++Q+S  +    I+ + A +   
Sbjct: 245 ISTPDELQAMLAKLKKATEIAVDLEHHSYRSYTGFLCLMQISDREND-WIVDLLALRDEI 303

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  D K  K+ H    D+  L   F V +  +F T  AS+L      +HGL + L
Sbjct: 304 EQLNEIFTDPKIVKVLHGAESDVVWLQQDFNVYIVNLFDTFHASKLLD--FPRHGLANLL 361

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +        K  Q +DW    L  E L YA SD   L  +       L
Sbjct: 362 EMYCDYIPDKRYQLADWRIRPLPQEMLDYARSDTHFLLFIYDNLRNAL 409


>gi|289427165|ref|ZP_06428881.1| 3'-5' exonuclease [Propionibacterium acnes J165]
 gi|289159634|gb|EFD07822.1| 3'-5' exonuclease [Propionibacterium acnes J165]
          Length = 395

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G GT  +  +A G       L   L  
Sbjct: 13  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 72

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 73  TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 127

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 128 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 186


>gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis]
          Length = 673

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLELWERG 459


>gi|313213333|emb|CBY37160.1| unnamed protein product [Oikopleura dioica]
          Length = 689

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    +AVD E       +   C+VQ+S       +  +A  +     L  +  + K  
Sbjct: 272 LREESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMY-KLNEVFANPKIV 330

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KIFH  R D+  L   FGV V  +F T  A++       +  L   L+    I + K  Q
Sbjct: 331 KIFHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLD--LAKKSLDYLLQHYCKIRLDKRFQ 388

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    +    L+YA  D  +L  +  +    L++L
Sbjct: 389 LADWRMRPIPPNMLRYARQDTHYLLYVYDRLRADLEKL 426


>gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated
           autoantigen homolog [Mus musculus]
          Length = 831

 Score =  161 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459


>gi|114553916|ref|XP_514382.2| PREDICTED: exosome component 10 isoform 5 [Pan troglodytes]
          Length = 885

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   ++   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459


>gi|293192610|ref|ZP_06609564.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
 gi|292820117|gb|EFF79114.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
          Length = 414

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 7   HEGDI--PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNA 63
            + D+   A   +     IA+D E            +VQ+   D GT  I        + 
Sbjct: 33  TQKDLEAAAHALSAGSAPIALDVERAQGFRYGSDPYLVQIRREDVGTFLID--THALPDL 90

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L   + D     + H    D+  L    G+R   +F T+IA+RL      + GL   +
Sbjct: 91  SVLQPGVED---VWLLHDCLQDLPNL-RQVGLRPSALFDTEIAARLIG--LERFGLAAVV 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +++LG+ + K  Q+SDWS   L  E L+YAA DV  L  L  + +++L  +GR + A   
Sbjct: 145 EQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTELYYRLSKRLDEMGRWEWAQQE 204

Query: 184 CNF 186
             +
Sbjct: 205 FAY 207


>gi|123226358|emb|CAM23946.1| exosome component 10 [Mus musculus]
          Length = 728

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459


>gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
 gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
          Length = 1195

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 3/157 (1%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           +   IA+D E       +   C++Q+S       I  +   + +   L  +  +    K+
Sbjct: 264 HCQEIAIDLEHHSYRTYQGFTCLMQISTRSEDFLIDTLLL-RSHIHMLNQVFTNPSIVKV 322

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    DI  L   FGV +  +F T  ASR+         L   LK    I+ +K  Q +
Sbjct: 323 LHGSDSDIKWLQRDFGVYIVNMFDTGQASRILEY--PSASLAFLLKFYCAIDANKKYQLA 380

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           DW    L +E ++YA  D  +L  +  +   +L   G
Sbjct: 381 DWRIRKLPEEMIKYAREDTHYLLYIYDRLRNELISKG 417


>gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10, partial [Taeniopygia guttata]
          Length = 504

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 3/157 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
               A+D E           C++Q+S       I  +A  + +   L     D    K+ 
Sbjct: 311 CKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLAL-RSDMNILNETFTDPAIVKVL 369

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L   FG+ +  VF T  A+RL      +H L   LK   G++  K  Q +D
Sbjct: 370 HGADSDVEWLQRDFGLYLVNVFDTHQAARLLNLG--RHSLDHLLKLYCGVDADKKYQLAD 427

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           W    L +E ++YA  D  +L  +  +  E L   G+
Sbjct: 428 WRIRPLPEEMIRYARDDTHYLLYIYDKVRELLWERGK 464


>gi|321465482|gb|EFX76483.1| hypothetical protein DAPPUDRAFT_226045 [Daphnia pulex]
          Length = 544

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 3/150 (2%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I VD E       R   C++Q+S       I  +       P L  +  D    KIF  
Sbjct: 118 VIGVDLEHHSDRSYRGITCLMQISTDKTDYIIDTLQLWDHLQP-LNKVFCDPNIVKIFQG 176

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L   FG+ V  +F T  A+ L        GL   L+    ++++K  Q +DW 
Sbjct: 177 ADSDVIWLQRDFGIYVVNLFDTLQAASLLGFQKK--GLYFLLQHYCQVHVNKKYQLADWR 234

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              L  E ++YA  D  +L  +  +  + L
Sbjct: 235 IRPLPQEMVKYAREDTHYLIYIYERMKQDL 264


>gi|239917797|ref|YP_002957355.1| ribonuclease D [Micrococcus luteus NCTC 2665]
 gi|239839004|gb|ACS30801.1| ribonuclease D [Micrococcus luteus NCTC 2665]
          Length = 416

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 6/170 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              +AVD E    +    R  +VQL      + ++   A    AP    +      E I 
Sbjct: 45  TGPVAVDAERASGIRYGQRAMLVQLKREGAGIWLVDPEALDGLAPLQEAL---TGVEWIL 101

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+R   +F T++A+R+      + GL   L+ELLG+ ++K   ++D
Sbjct: 102 HAASQDLPCLAEQ-GLRPDRLFDTELAARVAG--LPRVGLVAVLEELLGVTLAKEHSAAD 158

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           WS   L +  L YAA DV  L  LR     +L+  G+   A      +  
Sbjct: 159 WSVRPLPEAMLTYAALDVELLVPLREALIARLEADGKLAWAEQEFEHVRT 208


>gi|187466071|emb|CAQ51625.1| exosome component 10 [Mus musculus]
          Length = 727

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 309 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 367

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 368 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 425

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 426 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 458


>gi|281413711|ref|ZP_06245453.1| ribonuclease D [Micrococcus luteus NCTC 2665]
          Length = 415

 Score =  161 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 6/170 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              +AVD E    +    R  +VQL      + ++   A    AP    +      E I 
Sbjct: 45  TGPVAVDAERASGIRYGQRAMLVQLKREGAGIWLVDPEALDGLAPLQEAL---TGVEWIL 101

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G+R   +F T++A+R+      + GL   L+ELLG+ ++K   ++D
Sbjct: 102 HAASQDLPCLAEQ-GLRPDRLFDTELAARVAG--LPRVGLVAVLEELLGVTLAKEHSAAD 158

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           WS   L +  L YAA DV  L  LR     +L+  G+   A      +  
Sbjct: 159 WSVRPLPEAMLTYAALDVELLVPLREALIARLEADGKLAWAEQEFEHVRT 208


>gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens]
 gi|8928564|sp|Q01780|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen
           PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma
           overlap syndrome-associated autoantigen; AltName:
           Full=Polymyositis/scleroderma autoantigen 100 kDa;
           Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma
           autoantigen 2
 gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens]
 gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens]
 gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens]
 gi|56204112|emb|CAI22107.1| exosome component 10 [Homo sapiens]
 gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens]
 gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct]
 gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct]
 gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct]
          Length = 885

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   ++   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459


>gi|332807618|ref|XP_001136533.2| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes]
          Length = 909

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   ++   G
Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483


>gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus]
          Length = 705

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 287 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 345

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 346 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 403

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 404 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 436


>gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens]
 gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens]
 gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens]
 gi|56204111|emb|CAI22106.1| exosome component 10 [Homo sapiens]
          Length = 860

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   ++   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459


>gi|212528170|ref|XP_002144242.1| exosome complex exonuclease Rrp6, putative [Penicillium marneffei
           ATCC 18224]
 gi|210073640|gb|EEA27727.1| exosome complex exonuclease Rrp6, putative [Penicillium marneffei
           ATCC 18224]
          Length = 795

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 7/167 (4%)

Query: 10  DIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           D P   A      +  + IAVD E   +      + ++Q+S  D    +  +   +++  
Sbjct: 232 DTPEGVAEMVKELKKANEIAVDLEHHDMHTYYGLVSLMQISTRDKDWVVDTLQPWREDLQ 291

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  D    K+FH    DI  L    G+ V  +F T  A+ +   +  +  LK  L+
Sbjct: 292 QLNEVFADPNILKVFHGSTMDIVWLQRDLGLYVVGLFDTYHAA-VALGFPKR-SLKFLLE 349

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +       K  Q +DW    L++E L+YA +D  +L  +      +L
Sbjct: 350 KYARYEADKKYQMADWRLRPLTEEMLRYARADTHYLLYIYDCLRNEL 396


>gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans]
          Length = 741

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 6/176 (3%)

Query: 3   TIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T       + A  AA      +AVD E       +   C++QLS       I+ +   + 
Sbjct: 220 TFVETVEGLDALIAALSACREVAVDLEHHDFRSFQGITCLMQLSTRSED-YIVDVLRLRS 278

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +   L  + +D    K+FH  + D+  L   FG+ V  +F T IA    +T    H L  
Sbjct: 279 HMHRLNRVFLDTNILKVFHGAKEDVRWLQKDFGLYVANMFDTGIA---LQTLHMPHSLAF 335

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGR 176
            +    G+ + K  Q++DW    +  E + YA  D  +L  +  +     L   GR
Sbjct: 336 AVDHFCGVRLDKKYQTADWRIRPVPSEMIHYARQDTHYLLYVHDRLKALLLHAEGR 391


>gi|314988091|gb|EFT32182.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA2]
          Length = 412

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G GT  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWPGYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEVA 203


>gi|313812910|gb|EFS50624.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA1]
          Length = 412

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G GT  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPRVSLGPMVERYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L  +G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEVGKEEWARQEFAHLVEVA 203


>gi|332807620|ref|XP_001136452.2| PREDICTED: exosome component 10 isoform 3 [Pan troglodytes]
          Length = 884

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   ++   G
Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483


>gi|184201057|ref|YP_001855264.1| putative ribonuclease D [Kocuria rhizophila DC2201]
 gi|183581287|dbj|BAG29758.1| putative ribonuclease D [Kocuria rhizophila DC2201]
          Length = 420

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 73/179 (40%), Gaps = 8/179 (4%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            AE  A     +AVDTE         R  +VQL   G GTV I   A G  +   +   L
Sbjct: 36  AAEQLAAAHGPVAVDTERASGFRYGQRAFLVQLRREGAGTVLIDPEAVG--SLAEVDEAL 93

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                E + H    D+  L     +    +F T++  RL      + GL    +ELLG  
Sbjct: 94  R--GVEWVLHAATQDMPCL-AELDMHPDELFDTELGGRLLG--LRKVGLASMTEELLGFT 148

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +SK   + DWS   L  + L YAA DV  L  LR    E+L R G+ D A      +  
Sbjct: 149 LSKEHSAVDWSQRPLPVDWLNYAALDVEVLVQLRWATEERLARAGKLDWALEEFEHVRT 207


>gi|262199835|ref|YP_003271044.1| ribonuclease D [Haliangium ochraceum DSM 14365]
 gi|262083182|gb|ACY19151.1| Ribonuclease D [Haliangium ochraceum DSM 14365]
          Length = 400

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 8/170 (4%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGD----GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           D E          L +VQ+S GD        I  +A    +   ++ ++ D     + H 
Sbjct: 33  DFEFASDGRFLAELALVQVSWGDPEAPEIALIDSVAV---DPTPVLRLIGDPAVVSVAHA 89

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
            + D+ +L   F +     + T+IA+        Q G    +  LLG+ + KA Q + W 
Sbjct: 90  AKQDLGILAARFDIFAENFWDTQIAAAFV-GMAEQIGYGKLVDALLGVQLDKASQFTKWL 148

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
              LS  QL+YAA DV +L  +    +++L  LGR          L   A
Sbjct: 149 ERPLSPAQLRYAADDVRYLPRVWAHLSQRLDELGRRAWVGEESALLARDA 198


>gi|225439201|ref|XP_002269553.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 912

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 4/160 (2%)

Query: 14  ECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           E AA+   V+  AVD E       +   C++Q+S       +  +       P L  +  
Sbjct: 238 ELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHVGPYLREVFK 297

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D  ++K+ H    DI  L   FG+ +  +F T  ASR+ +    ++ L+  L    G+  
Sbjct: 298 DPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQASRVLK--LERNSLEHLLHHYCGVTA 355

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +K  Q+ DW    L  E L+YA  D  +L  +      +L
Sbjct: 356 NKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYDLMRTQL 395


>gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens]
          Length = 884

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   ++   G
Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483


>gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens]
          Length = 899

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   ++   G
Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483


>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera]
          Length = 901

 Score =  160 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 4/160 (2%)

Query: 14  ECAARY--VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           E AA+   V+  AVD E       +   C++Q+S       +  +       P L  +  
Sbjct: 227 ELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHVGPYLREVFK 286

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D  ++K+ H    DI  L   FG+ +  +F T  ASR+ +    ++ L+  L    G+  
Sbjct: 287 DPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQASRVLK--LERNSLEHLLHHYCGVTA 344

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +K  Q+ DW    L  E L+YA  D  +L  +      +L
Sbjct: 345 NKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYDLMRTQL 384


>gi|159037106|ref|YP_001536359.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
 gi|157915941|gb|ABV97368.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
          Length = 451

 Score =  160 bits (407), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 13  AECAARY---VDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           A   AR+      +A+D E         R  +VQL   G GT  I  +       P L  
Sbjct: 71  AGVVARFSAGTGPVALDAERASGYRYSQRAYLVQLRRAGAGTALIDPLP-----LPELTT 125

Query: 69  MLVDEKR---EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           +  DE     E + H    D+  L    G+R R +F T++A+RL      + GL    + 
Sbjct: 126 L--DEAIGEAEWVLHAASQDLPCL-AELGLRPRRLFDTELAARLAG--FERVGLAALTEH 180

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           LLG ++ K   ++DWS+  L +  L YAA DV  L  LR     +L R G+
Sbjct: 181 LLGFSLEKHHSAADWSSRPLPESWLTYAALDVELLVELRDALEAELTRQGK 231


>gi|257068547|ref|YP_003154802.1| ribonuclease D [Brachybacterium faecium DSM 4810]
 gi|256559365|gb|ACU85212.1| ribonuclease D [Brachybacterium faecium DSM 4810]
          Length = 399

 Score =  160 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 8/179 (4%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLV 71
              A+   + +AVD E         R  +VQL     GT  I  +A        L  +L 
Sbjct: 32  EAAASAPEEPVAVDAERASSYRYSSRAYLVQLRTEAAGTALIDPLAFTMPA--TLRSLLA 89

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             +RE + H    D+  L    G+    +F T++A+RL      + GL   +++ LG+ +
Sbjct: 90  --EREWVLHAAGQDLPSL-AEIGLEPGGLFDTELAARLLGM--ERVGLGAVVEDTLGLRL 144

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +K   ++DWS   L +  L YAA DV  L  +R    E+L+   + D A         R
Sbjct: 145 AKEHSAADWSRRPLPEGWLTYAALDVEVLVEVRDVLRERLREACKEDWARQEFEHERVR 203


>gi|221121078|ref|XP_002157951.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 758

 Score =  160 bits (407), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 3/159 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            + V  IAVD E       +  LC++Q+S       I  +A  ++    +  +  D    
Sbjct: 257 LKKVKEIAVDLEHHSYRSFQGFLCLMQISTRFEDFIIDTLAL-REEMYKINEIFSDPNIL 315

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L   FGV V  +F T  A+R    + ++  L   L +   ++  K  Q
Sbjct: 316 KVMHGADSDIGWLQRDFGVYVVNMFDTGQAARTL--HEDRFSLAYLLSKYCNVDAQKQYQ 373

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +DW    +  E + YA  D  +L  +      +L   G
Sbjct: 374 LADWRIRPIPKEMILYAQEDTHYLLYVYDILRNQLLNKG 412


>gi|145594075|ref|YP_001158372.1| 3'-5' exonuclease [Salinispora tropica CNB-440]
 gi|145303412|gb|ABP53994.1| 3'-5' exonuclease [Salinispora tropica CNB-440]
          Length = 451

 Score =  160 bits (406), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 13  AECAARY---VDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVG 68
           AE  AR+      +A+D E         R  +VQL   G GT  I  +       P L  
Sbjct: 71  AEVVARFSQGTGPVALDAERASGYRYSQRAYLVQLRRAGAGTALIDPLP-----LPELTS 125

Query: 69  MLVDEKR---EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           +  DE     E + H    D+  L    G+R R +F T++A+RL      + GL    + 
Sbjct: 126 L--DEAIGEAEWVLHAASQDLYCL-AELGLRPRRLFDTELAARLAG--FERVGLAALTEN 180

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           LLG ++ K   ++DWS+  L +  L YAA DV  L  LR     +L R G+
Sbjct: 181 LLGFSLEKHHSAADWSSRPLPESWLTYAALDVELLVELRDALDAELTRQGK 231


>gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus]
 gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus]
 gi|296479174|gb|DAA21289.1| exosome component 10 [Bos taurus]
          Length = 702

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    +  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCSVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLELWERG 459


>gi|282853987|ref|ZP_06263324.1| 3'-5' exonuclease [Propionibacterium acnes J139]
 gi|282583440|gb|EFB88820.1| 3'-5' exonuclease [Propionibacterium acnes J139]
 gi|314923384|gb|EFS87215.1| 3'-5' exonuclease [Propionibacterium acnes HL001PA1]
 gi|314981064|gb|EFT25158.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA3]
 gi|315091889|gb|EFT63865.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA4]
 gi|315093353|gb|EFT65329.1| 3'-5' exonuclease [Propionibacterium acnes HL060PA1]
 gi|327327556|gb|EGE69332.1| putative ribonuclease D [Propionibacterium acnes HL103PA1]
          Length = 412

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G  T  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPKVSLGPMVEHYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEIA 203


>gi|311742288|ref|ZP_07716097.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
 gi|311313916|gb|EFQ83824.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
          Length = 411

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 8/174 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           AR    +A+D E         R  +VQL   G GT  +  I  G     +L   + D   
Sbjct: 46  ARGSGPVALDAERASGYRYSQRAYLVQLRREGSGTHLVDPIGFGG--LEDLDDAIGDA-- 101

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H    D+  L    G+R R +F T+ A RL      + GL   ++  LG +++K  
Sbjct: 102 EWILHAATQDLPCL-AEIGLRPRALFDTEHAGRLLN--LPRVGLATLVEHFLGRSLAKEH 158

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            ++DWS   L +  L YAA DV  L  LR     +L+  G+ + A      L+ 
Sbjct: 159 SAADWSTRPLPEPWLVYAALDVEVLVELRDLLDAELREAGKREWAAQDFEALLS 212


>gi|315103391|gb|EFT75367.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA2]
          Length = 412

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G  T  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPKVSLGPMVEHYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEIA 203


>gi|149174964|ref|ZP_01853588.1| ribonuclease D [Planctomyces maris DSM 8797]
 gi|148846301|gb|EDL60640.1| ribonuclease D [Planctomyces maris DSM 8797]
          Length = 395

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 80/203 (39%), Gaps = 6/203 (2%)

Query: 2   TTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           + + V + +  A C   R    +A DTE +     R  L ++Q +     V +       
Sbjct: 3   SPLIVQQSEFIALCDQIRDAGIVAFDTEFVSEFTYRPELSLLQFAVNGQAVAVDPYE--M 60

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +      ++ D+    + H GR ++    +  G + R +   +IA  L R+ +      
Sbjct: 61  DDLSPWWDIMTDDDTVIVVHGGREEVRFCRHFSGKKPRKLVDLQIAEGL-RSRSFPISYT 119

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             +  +L       +  +DW    L+ +Q++YA  DV  +  +     ++L  LGR D A
Sbjct: 120 ALVARVLNEKAGSKETRTDWRRRPLTQQQIKYALDDVKFVLKIWKIQEKELIDLGRLDWA 179

Query: 181 TSCCNFLMDRAELDLLG--WENV 201
            +    ++D  + +     W  V
Sbjct: 180 EAEFQRMIDEVDSEFHRENWRRV 202


>gi|314966730|gb|EFT10829.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA2]
          Length = 412

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
             +     IA+DTE         R C++QL   G  T  +  +A G       L   L  
Sbjct: 30  ALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L    G+R   +F T++A RL      +  L   ++   G+ + 
Sbjct: 90  TQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLN--LPKVSLGPMVEHYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  +   YAA DV  L+ LR +    L   G+ + A      L++ A
Sbjct: 145 KEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQEFAHLVEIA 203


>gi|315655438|ref|ZP_07908338.1| ribonuclease D [Mobiluncus curtisii ATCC 51333]
 gi|315490378|gb|EFU80003.1| ribonuclease D [Mobiluncus curtisii ATCC 51333]
          Length = 406

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 8/177 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A     +A+DTE  G         +VQL   G GT  I  IA      P    +   
Sbjct: 32  ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAFP-DLEPLSRAI--- 87

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            K E I H    D+  L    G+R + +F T++A++L        GL   L+++LGI+++
Sbjct: 88  GKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNFQG--FGLAAVLEQVLGISLA 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           K   ++DWS   L  +   YAA DV +L  LR     +LQ   + D A    +FL+D
Sbjct: 145 KEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201


>gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus]
          Length = 886

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     +     L   L +    K+FH  
Sbjct: 307 FAVDLEHHSYRSFLGLTCLMQVSTRTEDF-IIDTLELRSEMYLLNESLTNPTIVKVFHGA 365

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++  K  Q +DW  
Sbjct: 366 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCSVDSDKQYQLADWRI 423

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 424 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 456


>gi|304389402|ref|ZP_07371365.1| ribonuclease D [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327212|gb|EFL94447.1| ribonuclease D [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 406

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 8/177 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A     +A+DTE  G         +VQL   G GT  I  IA      P    +   
Sbjct: 32  ELVADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAFP-DLEPLSRAI--- 87

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            K E I H    D+  L    G+R + +F T++A++L        GL   L+++LGI+++
Sbjct: 88  GKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNFQG--FGLAAVLEQVLGISLA 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           K   ++DWS   L  +   YAA DV +L  LR     +LQ   + D A    +FL+D
Sbjct: 145 KEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201


>gi|308473314|ref|XP_003098882.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
 gi|308268021|gb|EFP11974.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
          Length = 860

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 5/169 (2%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           VD E   +       C++Q+S  D    I            L     + K  K+FH    
Sbjct: 292 VDLEHHEMRTYLGLTCLIQISTRDEDFIIDPFPMWDCIG-ILNEPFTNPKILKVFHGADN 350

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           D+  L   FG+ +  +F T +A +  +    +  L         + + K  Q +DW A  
Sbjct: 351 DVLWLQRDFGIHIVNLFDTYVAMKKLKY--PKFSLAYLAFRFADVILDKQYQLADWRARP 408

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL--ATSCCNFLMDRA 191
           L +  + YA  D  +L        E+L +  + DL    S CN L  R 
Sbjct: 409 LRNAMINYAREDTHYLLYSYDMLREQLLKQDKKDLNVVYSECNDLCVRV 457


>gi|315656649|ref|ZP_07909536.1| ribonuclease D [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492604|gb|EFU82208.1| ribonuclease D [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 406

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 8/177 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A     +A+DTE  G         +VQL   G GT  I  IA      P    +   
Sbjct: 32  ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAFP-DLEPLSRAI--- 87

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            K E I H    D+  L    G+R + +F T++A++L        GL   L+++LGI+++
Sbjct: 88  GKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNFQG--FGLAAVLEQVLGISLA 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           K   ++DWS   L  +   YAA DV +L  LR     +LQ   + D A    +FL+D
Sbjct: 145 KEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201


>gi|154508933|ref|ZP_02044575.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798567|gb|EDN80987.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
           17982]
          Length = 414

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 7   HEGDI--PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNA 63
            + D+   A   +     IA+D E            +VQ+   D GT  I        + 
Sbjct: 33  TQKDLEAAARALSTGSAPIALDVERAQGFRYGSDPYLVQIRREDVGTFLID--THALPDL 90

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L   + D     + H    D+  L    G+R   +F T+IA+RL      + GL   +
Sbjct: 91  SVLQPGVED---VWLLHDCLQDLPNL-RQVGLRPSTLFDTEIAARLIG--LERFGLAAVV 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +++LG+ + K  Q+SDWS   L  E L+YAA DV  L  L  + +++L  +GR + A   
Sbjct: 145 EQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTELYYRLSKRLDEMGRWEWAQQE 204

Query: 184 CNF 186
             +
Sbjct: 205 FGY 207


>gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo]
 gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis]
          Length = 879

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 2/153 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    +A+D E       R  +C+VQ++  D    I   +   +    L  +  D + 
Sbjct: 331 LLKKCSIVAIDVEHHSTQSYRGFVCLVQITGADDDWVIDPFSIFDEMW-RLNDVTTDPRI 389

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    DI  L   FGV V  +F T  A+ +    +  H L   ++  LGI++ K+ 
Sbjct: 390 LKVMHGAESDILWLQRDFGVYVVNLFDTLKAADVLC-LSCGHSLSSLVRHFLGIHLDKSY 448

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           Q +DW    +  + L YA +D  +L  L     
Sbjct: 449 QLADWRIRPIPRDMLTYATADTHYLLDLYSALK 481


>gi|114553924|ref|XP_001136359.1| PREDICTED: exosome component 10 isoform 2 [Pan troglodytes]
          Length = 811

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   ++   G
Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483


>gi|269977281|ref|ZP_06184254.1| ribonuclease D [Mobiluncus mulieris 28-1]
 gi|307701108|ref|ZP_07638133.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
 gi|269934584|gb|EEZ91145.1| ribonuclease D [Mobiluncus mulieris 28-1]
 gi|307614103|gb|EFN93347.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
          Length = 422

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 6/175 (3%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           E  A    ++A+DTE  G         +VQL   D    +I   A     P    +    
Sbjct: 49  ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEPLGAAI---G 105

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K E I H    D+  L    G+R + +F T++A++L      + GL    +++LGI + K
Sbjct: 106 KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLN--FERFGLGSLTEQVLGIMLEK 162

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
              ++DWS   L    L+YAA DV  L  LR     +L   G+ D A      L+
Sbjct: 163 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 217


>gi|298346894|ref|YP_003719581.1| ribonuclease D [Mobiluncus curtisii ATCC 43063]
 gi|298236955|gb|ADI68087.1| ribonuclease D [Mobiluncus curtisii ATCC 43063]
          Length = 406

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 8/177 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A     +A+DTE  G         +VQL   G GT  I  IA      P    +   
Sbjct: 32  ELIADATGPVALDTERAGSFRYSQGAYLVQLRREGAGTFLIDPIAFP-DLEPLSRAI--- 87

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            K E I H    D+  L    G+R + +F T++A++L        GL   L+++LGI+++
Sbjct: 88  GKAEWILHDATQDLPYLL-ELGMRPQLLFDTELAAKLLNFQG--FGLAAVLEQVLGISLA 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           K   ++DWS   L  +   YAA DV +L  LR     +LQ   + D A    +FL+D
Sbjct: 145 KEHSAADWSTRPLPSDWQTYAALDVDYLIDLRNHLWLQLQDADKDDWAEQEFDFLLD 201


>gi|93005631|ref|YP_580068.1| 3'-5' exonuclease [Psychrobacter cryohalolentis K5]
 gi|92393309|gb|ABE74584.1| 3'-5' exonuclease [Psychrobacter cryohalolentis K5]
          Length = 380

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 6/172 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A      +A+DTE +       RL ++QL+ G+    +      Q     L   L+    
Sbjct: 13  ALTTCGRVALDTEFIKRDTYYPRLALIQLNTGNHVYLLDAP---QLQLSELWQALMKVDV 69

Query: 76  EKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             I+H    D+ + +   G      +F T+IA         Q G +  L E L ++I K 
Sbjct: 70  A-IWHACGEDLGIFYLLSGCPPLTNIFDTQIALSYLTGQL-QMGYQQALDEQLDMHIDKE 127

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           Q  SDW    LSDEQ QYA  DV  L AL L     L+  G  +     C  
Sbjct: 128 QSQSDWLQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQGLYEYVWEDCQL 179


>gi|322708171|gb|EFY99748.1| exosome complex exonuclease Rrp6, putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 830

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 79/201 (39%), Gaps = 4/201 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +  +EG +      R    IAVD E          +C++Q+S  D    +  +   +   
Sbjct: 226 VDTYEGVLEMLEELRKAKEIAVDLEHHDFRTYTGLVCLMQVSTRDRDWIVDTLQPWRHKL 285

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  D    K+FH    D+  L    G+ V  +F T  A  L         L   L
Sbjct: 286 EVLNDVFADPSVVKVFHGAYMDMVWLQRDLGLYVNGLFDTYFACNLLNYPGR--SLAFLL 343

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSDLATS 182
            + +G +  K  Q +DW    + ++ L YA SD  +L  +      +L +   +SD    
Sbjct: 344 SKFVGFDADKQYQLADWRIRPIPEDMLYYARSDTHYLLYIYDNVRNELIEASDKSDPEKD 403

Query: 183 CCNFLMDRA-ELDLLGWENVD 202
             N  ++R+ EL L   EN D
Sbjct: 404 YINQALERSRELALSRHENPD 424


>gi|114553922|ref|XP_001136272.1| PREDICTED: exosome component 10 isoform 1 [Pan troglodytes]
          Length = 768

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 334 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 393 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 450

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   ++   G
Sbjct: 451 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 483


>gi|305680942|ref|ZP_07403749.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
 gi|305659147|gb|EFM48647.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
          Length = 408

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 7/177 (3%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           +  A+     AVDTE +      +R+C++Q+   G GT+ I   +  Q     +  +L D
Sbjct: 30  DRLAQGTGWCAVDTERVSGFRYHNRVCLLQIRRAGAGTMLIDVESDPQATTDFMGRVLTD 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
                + H    D+  L     +R   +F T++A R    +  +  L   ++  LG+ + 
Sbjct: 90  TG--WVVHAATSDLPYLEQ-LRLRPAQLFDTELAGRFLGFH--RVNLAAMVEHYLGVRLR 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFLM 188
           K     DWS   +  E L YAA DV +L  L      +L +   + +     C++L 
Sbjct: 145 KNHGGEDWSRRPIPSEWLDYAALDVEYLLPLADAMRSELTQQSPKDEWVAEECDYLT 201


>gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
 gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
          Length = 512

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 6/172 (3%)

Query: 11  IPA----ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +PA             IAVD E       +  +C++Q+S       +  +       P L
Sbjct: 230 LPALETMAAKLHASSEIAVDLENHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVL 289

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +  +    K+ H    DI  L   FG+ V  +F T  A+R+ R    + GL   L+  
Sbjct: 290 RSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDTGQAARVLRM--ERFGLAFLLQTF 347

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            G+   K  Q +DW    LS E L+YA  D  +L  +  +    L+    ++
Sbjct: 348 CGVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYVYDKMKGMLRDAETTE 399


>gi|306818778|ref|ZP_07452500.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
 gi|304648464|gb|EFM45767.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
          Length = 422

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 6/175 (3%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           E  A    ++A+DTE  G         +VQL   D    +I   A     P    +    
Sbjct: 49  ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEPLGTAI---G 105

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K E I H    D+  L    G+R + +F T++A++L      + GL    +++LGI + K
Sbjct: 106 KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLN--FERFGLGSLTEQVLGIMLEK 162

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
              ++DWS   L    L+YAA DV  L  LR     +L   G+ D A      L+
Sbjct: 163 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 217


>gi|302833517|ref|XP_002948322.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
           nagariensis]
 gi|300266542|gb|EFJ50729.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
           nagariensis]
          Length = 191

 Score =  159 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 2/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
               + +AVD E       +   C++Q+S       +  +A   +  P L  +  D +  
Sbjct: 16  LEAAEELAVDLEHHSHRSFQGFTCLMQISTRTTDYVVDTLALRNQLGPALARVFADPRVV 75

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    D+  L   F + +  +F T  A+R+        GL   L+ + G+   K  Q
Sbjct: 76  KVFHGADSDVDWLQRDFSLFLVNMFDTGQAARVLG--LPSFGLAYLLESICGVQADKRYQ 133

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    LS   L YA  D  +L  +  +  E+L  L
Sbjct: 134 MADWRVRPLSPPMLHYARCDTHYLLYVYDKLREQLAAL 171


>gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
 gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
          Length = 352

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 6/170 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
                  I +DTE   L    ++LC++Q+S     + I  +A    +   L        +
Sbjct: 17  LLAPHPRIPIDTEADSLHCYFEKLCLIQISVPGHDLLIDPLAGI--SLQPLFEAFA--GK 72

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E I H   +D+ +L         PVF T IA+RL      +  L   +K    + ++KA 
Sbjct: 73  ELIIHGADYDLRLLRRVGFTVTAPVFDTMIAARLCG--IEEFSLAALIKRYFDVALTKAS 130

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           Q ++W+   LS +   YA  D  +L  +      +L RL R +     C+
Sbjct: 131 QKANWARRPLSPQMADYAVKDTHYLLEIAGILEAELTRLDRMEWFRQSCD 180


>gi|115689891|ref|XP_001200735.1| PREDICTED: similar to exosome component 10, partial
           [Strongylocentrotus purpuratus]
          Length = 376

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 3/160 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           + +    IAVD E           C++Q+S  +    ++     +     L     D K 
Sbjct: 133 SLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHD-YVVDTLELRSELQMLNDAFTDPKI 191

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    D   L    G+ V  +F T  ASR        H L   L     +   K  
Sbjct: 192 VKVFHGANMDFDWLQRDLGLYVVNMFDTHQASRSLG--FPHHSLASLLSRYCQVEADKQY 249

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q +DW    L +E L YA  D  +L  +      +L + G
Sbjct: 250 QLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRG 289


>gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102]
          Length = 831

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 79/201 (39%), Gaps = 4/201 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +  +EG +      R    IAVD E          +C++Q+S  D    +  +   +   
Sbjct: 226 VDTYEGVLEMLQELRKAKEIAVDLEHHDFRTYTGLVCLMQVSTRDQDWIVDTLQPWRHKL 285

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  +    K+FH    D+  L    G+ V  +F T  A  L         L   L
Sbjct: 286 EVLNDVFANPSIVKVFHGAYMDMVWLQRDLGLYVNGLFDTYFACDLLNYPGK--SLAFLL 343

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSDLATS 182
            + +G +  K  Q +DW    + +E L YA SD  +L  +      +L +   +SD    
Sbjct: 344 SKFVGFDADKQYQLADWRIRPIPEEMLYYARSDTHYLLYIFDNVRNELIEASDKSDPEKD 403

Query: 183 CCNFLMDRA-ELDLLGWENVD 202
             N  ++R+ EL L   EN D
Sbjct: 404 YINQALERSRELALSRHENPD 424


>gi|242767043|ref|XP_002341292.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218724488|gb|EED23905.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 771

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 7/167 (4%)

Query: 10  DIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           D P   A      +    IAVD E   +      + ++Q+S  D    +  +   +++  
Sbjct: 232 DTPEGVAEMVEELKKAKEIAVDLEHHDVHTYYGLVSLMQISTRDKDWVVDTLQPWREDLQ 291

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  D    K+FH    DI  L    G+ V  +F T  A+ +   +  +  LK  L+
Sbjct: 292 RLNEVFTDPNILKVFHGSTMDIVWLQRDLGLYVVSLFDTYHAA-VALGFPKR-SLKFLLE 349

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +       K  Q +DW    L+DE L+YA +D  +L  +      +L
Sbjct: 350 KYAHYEADKKYQMADWRLRPLTDEMLKYARADTHYLLYIYDCLRNEL 396


>gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus]
          Length = 497

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       I+     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   +L   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459


>gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group]
 gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica
           Group]
 gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group]
 gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group]
          Length = 600

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 3/177 (1%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+   +  +       + V+  AVD E       +   C++Q+S       +  +     
Sbjct: 146 TLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIY 205

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L     D  + K+ H    DI  L   F + V  +F T  ASR+      ++ L+ 
Sbjct: 206 IGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVL--QMERNSLEH 263

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            L+   G+  +K  Q++DW +  LSDE ++YA  D  +L  +      +LQ+   SD
Sbjct: 264 LLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQKESTSD 320


>gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis]
 gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis]
          Length = 883

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 5/165 (3%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
                AVD E           C++Q+S       II +   + N   L     +    K+
Sbjct: 302 QCAEFAVDLEHHSYRSFLGLTCLMQISTRTED-YIIDVLELRSNLYILNESFTNPSIIKV 360

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH    DI  L   FG+ +  +F T  A+R+      +H L   L+    +   K  Q +
Sbjct: 361 FHGADSDIEWLQKDFGLYIVNMFDTHQAARILNLG--RHSLDHLLRLYCNVESDKRYQLA 418

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDLAT 181
           DW    L +E L+YA  D  +L  +  +    L     G+ +L  
Sbjct: 419 DWRIRPLPEEMLEYARVDTHYLLYIYDKMRIALLDAANGQPNLLQ 463


>gi|227875468|ref|ZP_03993609.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
 gi|227844022|gb|EEJ54190.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
          Length = 397

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 6/175 (3%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           E  A    ++A+DTE  G         +VQL   D    +I   A     P    +    
Sbjct: 24  ELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPDLEPLGAAI---G 80

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K E I H    D+  L    G+R + +F T++A++L      + GL    +++LGI + K
Sbjct: 81  KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLN--FERFGLGSLTEQVLGIMLEK 137

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
              ++DWS   L    L+YAA DV  L  LR     +L   G+ D A      L+
Sbjct: 138 EHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQEFEHLL 192


>gi|268532256|ref|XP_002631256.1| C. briggsae CBR-CRN-3 protein [Caenorhabditis briggsae]
 gi|187036904|emb|CAP23569.1| CBR-CRN-3 protein [Caenorhabditis briggsae AF16]
          Length = 868

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 5/174 (2%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           V+  +VD E   +       C++Q+S  D    I       +    L     +    K+F
Sbjct: 290 VEEFSVDLEHHEMRTYLGLTCLIQISTRDEDFIIDPFPMWDRIG-ILNEPFTNPNILKVF 348

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L   FGV V  +F T +A +  +    +  L         + + K  Q +D
Sbjct: 349 HGSDNDVLWLQRDFGVHVVNLFDTYVAMKKLKY--PKFSLAYLAFRFADVVLDKQYQLAD 406

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL--ATSCCNFLMDRA 191
           W A  L +  + YA  D  +L        E+L + G  DL    +  N L  R 
Sbjct: 407 WRARPLRNAMINYAREDTHYLLYSYDMLREQLLQQGHKDLENVYAESNDLCIRV 460


>gi|256395899|ref|YP_003117463.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928]
 gi|256362125|gb|ACU75622.1| 3'-5' exonuclease [Catenulispora acidiphila DSM 44928]
          Length = 443

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 21/180 (11%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD----E 73
               +AVD E         R  +VQ+   G GT  I  IA      P+L  +  D     
Sbjct: 56  GTGPVAVDAERASGYKYSQRAYLVQIRRQGAGTFLIDPIAC-----PDLSALAGDGPALA 110

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTKIASRLTRTYTNQHGLKDNLKE 125
             E + H    D+A L    G+            +F T++ +RL      + GL   + E
Sbjct: 111 GAEWVLHAASQDLACL-AEVGMHPPARRPDGTGGLFDTELGARL--GGHERVGLGPLVAE 167

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +L + + K   +SDWS   L +  L+YAA DV  L  +R    ++L+  G+ D A    +
Sbjct: 168 VLKLELEKGHSASDWSTRPLPEAWLRYAALDVEVLVEVRDIIEDELRGAGKLDWARQEFD 227


>gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens]
          Length = 679

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   ++   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459


>gi|312385767|gb|EFR30186.1| hypothetical protein AND_00361 [Anopheles darlingi]
          Length = 526

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 4/176 (2%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           HE  + A     +    IA+D E       +   C++QLS       +  +A  +     
Sbjct: 214 HESQLSALLSDLKAAPQIAIDLEHHSYRTFQGFTCLMQLSTRKKDYIVDTLAL-RDELHV 272

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +  D ++ K+ H    DI  L    G+ +  +F T  A+R+     ++ GL+  LK 
Sbjct: 273 LNEVFTDPRKLKVLHGAISDIEWLQRDLGLYLVNMFDTGEAARVL--QFSRIGLQFLLKH 330

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
              I   KA Q +DW    L    ++YA  D  +L  +  +    L   G   L  
Sbjct: 331 YCNIETDKAYQLADWRMRPLPPAFIEYARKDTHYLLYIYDRIRNDLLEKGGDSLLQ 386


>gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB]
 gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB]
          Length = 339

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 10/199 (5%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A         I++DTE   +   R++LC+VQ+     T           +   L     D
Sbjct: 68  AREDLDSSSLISLDTEYDSMHYFREKLCLVQVRASKRTYVFDPF--NGIDLQFLRPYFAD 125

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +  K+ H G  DI +L   +G   R +F T  A+ +    +    L   +++ LG+ I 
Sbjct: 126 PRLLKVTHAGDNDIRILKRDYGFEFRNIFDTHRAAHMLG--SQYLALSSIIEQYLGVEIE 183

Query: 133 KA--QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD- 189
           K    Q S W A  LS+ QL+YA  D  +L  L     EKL   G  + A      +   
Sbjct: 184 KTKKMQRSKWEARPLSEGQLRYAVQDTAYLADLYRHLNEKLSLKGMQERARKVFENVAAV 243

Query: 190 ---RAELDLLGWENVDIFS 205
                 LDLLG   +  ++
Sbjct: 244 SWREKTLDLLGHRRISGYA 262


>gi|50552133|ref|XP_503541.1| YALI0E04444p [Yarrowia lipolytica]
 gi|49649410|emb|CAG79122.1| YALI0E04444p [Yarrowia lipolytica]
          Length = 738

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 4/162 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +  + IA+D E   +       C+VQ+S  +    I  IA   +N      +L D K  
Sbjct: 237 LKTQEEIAIDVEHHSMRTYYGITCLVQVSSREQDYIIDTIA--LRNLEIFNEVLTDPKIV 294

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L   FG+ +  +F T  A++        H L   L+       SK  Q
Sbjct: 295 KVLHGATMDIQWLQRDFGLYIVSLFDTFHAAQALG--LKGHSLAFLLQHYANFVTSKKYQ 352

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            SDW    +S EQL YA +D   L  +  Q    L +  + +
Sbjct: 353 LSDWRIRPMSPEQLLYARADTHFLLNIYDQLKNALVQKDKIE 394


>gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group]
          Length = 599

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 3/177 (1%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+   +  +       + V+  AVD E       +   C++Q+S       +  +     
Sbjct: 145 TLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIY 204

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L     D  + K+ H    DI  L   F + V  +F T  ASR+      ++ L+ 
Sbjct: 205 IGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVL--QMERNSLEH 262

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            L+   G+  +K  Q++DW +  LSDE ++YA  D  +L  +      +LQ+   SD
Sbjct: 263 LLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQKESTSD 319


>gi|315604318|ref|ZP_07879384.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314024|gb|EFU62075.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 414

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 13/190 (6%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVG 68
           D  A+  A     +A+D E            +VQ+   D GT  I          P+L  
Sbjct: 38  DDAAKALALGRAPVALDVERAQGFRYGSDPYLVQIRREDVGTFLID-----THALPDLSA 92

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +        + H    D+  L    G+    +F T+IA+RL      + GL    +++LG
Sbjct: 93  LAPGVDDVWLLHDCLQDLPNL-RQVGLVPSSLFDTEIAARLVG--LERFGLAAVAEQVLG 149

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL- 187
           + + K  Q+SDWS   L  E L+YAA DV  L  L  + +++L ++GR + A    +   
Sbjct: 150 LGLVKDHQASDWSLRPLPPEWLRYAALDVELLTELYYRLSKRLDQMGRWEWAQQEFSHAL 209

Query: 188 ---MDRAELD 194
                 A+ D
Sbjct: 210 SVRPSPAKPD 219


>gi|213510932|ref|NP_001133834.1| Exosome component 10 [Salmo salar]
 gi|209155512|gb|ACI33988.1| Exosome component 10 [Salmo salar]
          Length = 885

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 59/159 (37%), Gaps = 3/159 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
                  AVD E           C++Q+S  D    II     +     L     D    
Sbjct: 303 LTKTSEFAVDLEHHSYRSFLGITCLMQISTRDEDF-IIDTLELRSELYILNEAFTDPAIV 361

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ +  +F T  ASR       +H L   LK    ++  K  Q
Sbjct: 362 KVFHGADSDIEWLQKDLGLYIVNMFDTHQASRTLNLG--RHSLDHLLKLFCNVDSDKRYQ 419

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +DW    L DE  QYA +D  +L  +  +    L  +G
Sbjct: 420 LADWRIRPLPDEMFQYARADTHYLLYVYDRLRVDLWEVG 458


>gi|309811737|ref|ZP_07705515.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
 gi|308434349|gb|EFP58203.1| 3'-5' exonuclease [Dermacoccus sp. Ellin185]
          Length = 459

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 16/194 (8%)

Query: 2   TTIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAA 58
             +      +   CAA       +A+D E        +   +VQL   G GT  I  +  
Sbjct: 56  PDVITTAAQLKECCAAIRAGHGPVAIDAERASGFRYGNDAYLVQLRREGAGTWLIDPVPL 115

Query: 59  GQKNAPNLVGMLVDEKR---EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
              ++       ++      E + H    D+  L    G+R R +F T++ SRL      
Sbjct: 116 NDLSS-------LNTAIGSAEWVLHAATQDLPCL-KALGLRPRKLFDTELGSRLAG--LP 165

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           + GL    +  +G+ ++K   + DWS   L  + L YAA DV  L  +R      L+  G
Sbjct: 166 RVGLAAVTEHFVGVTLAKEHSAVDWSTRPLPHDWLVYAALDVERLVEVRDALAADLEAQG 225

Query: 176 RSDLATSCCNFLMD 189
           +++ A      L+D
Sbjct: 226 KAEWARQEFEALLD 239


>gi|227495500|ref|ZP_03925816.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
 gi|226831047|gb|EEH63430.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
          Length = 402

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 10/193 (5%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGML 70
            A+  ++    +A+D E         R  +VQ+   D GT  I   +    +   L   L
Sbjct: 29  AAQLLSKSTMPVAIDVERAVGYRYSHRAYLVQIRREDVGTFLID--SGTLPDLSILNEPL 86

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            +     I H    DIA L    G+ +  +F T +A+RL      + GL    +++LG+ 
Sbjct: 87  NNA--VWILHDADQDIASL-RMCGLEIPELFDTMLAARLLGFQ--RFGLAAVCEQILGVT 141

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           + K  QS DWS   L    L+YAA DV  L  L  + +  L +  R + A    + ++ R
Sbjct: 142 LDKNHQSDDWSTRPLPRPWLRYAALDVELLTDLYEKMSHSLFKANRWEWAQQEFHNILTR 201

Query: 191 --AELDLLGWENV 201
              + D   W N+
Sbjct: 202 PTKKPDSEPWRNL 214


>gi|325183710|emb|CCA18169.1| exosome complex exonuclease RRP6like protein putativ [Albugo
           laibachii Nc14]
          Length = 770

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 3/157 (1%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
              +   A+A+D E           C++Q+S  +    +  +A  + +   L  +  D +
Sbjct: 236 LILQEAHALAIDLEHHNYRSYLGLTCLMQISTHNHDFLVDTLAL-RSSLQLLNQVFCDPQ 294

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           + K+ H    DI  L    G+ V  +F T  A+R+      +  L   LK+   I   K 
Sbjct: 295 KLKVLHGADMDILWLQRDLGLYVVNMFDTGRAARVL--QLPRFSLAYLLKKCCDIEADKQ 352

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            Q +DW    L++E  +YA  D  +L  +  +  E+L
Sbjct: 353 YQLADWRQRPLTEEMTRYAREDTRYLLFIYRKMKEEL 389


>gi|156844457|ref|XP_001645291.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115951|gb|EDO17433.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 746

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 62/174 (35%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S       +  +A  +     L  +  D    
Sbjct: 228 LKECTEIAVDLEHHDYRSYYGIVCLMQISTRKEDFLVDTLAL-RDELHILNEVFADPNIL 286

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ V  +F T  ASR       +H L   L++      SK  Q
Sbjct: 287 KVLHGAFMDIIWLQRDLGLYVVSLFDTYHASRALG--FPRHSLAYLLEKYANFKTSKKYQ 344

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW    LS     YA +D   L  +  Q   +L R  +          +  R
Sbjct: 345 LADWRVRPLSKPMHAYARADTHFLLNIYDQIRNQLIRENKLAEVLFESRNVAKR 398


>gi|47498064|ref|NP_998833.1| exosome component 10 [Xenopus (Silurana) tropicalis]
 gi|45708813|gb|AAH67962.1| exosome component 10 [Xenopus (Silurana) tropicalis]
          Length = 883

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 3/153 (1%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
                AVD E           C++Q+S       II +   + N   L     +    K+
Sbjct: 302 QCAEFAVDLEHHSYRSFLGLTCLMQISTRTED-YIIDVLELRSNMYILNESFTNPSIIKV 360

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    DI  L   FG+ +  +F T  A+R+      +H L   L+    +   K  Q +
Sbjct: 361 LHGADSDIEWLQKDFGLYIVNMFDTHQAARILNLG--RHSLDHLLRLYCNVESDKRYQLA 418

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           DW    L +E ++YA +D  +L  +  +    L
Sbjct: 419 DWRIRPLPEEMIEYARADTHYLLFIYDKMRTAL 451


>gi|157124837|ref|XP_001660547.1| hypothetical protein AaeL_AAEL010007 [Aedes aegypti]
 gi|108873835|gb|EAT38060.1| conserved hypothetical protein [Aedes aegypti]
          Length = 949

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 4/174 (2%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            I   E  +P      +    +A+D E       +   C++Q+S       I  +A  ++
Sbjct: 272 DIIDKESQLPGLLKELKAAKELAIDLEHHSYRTYQGFTCLMQISTRSKDYIIDTLAL-RE 330

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +  + K  K+ H    DI  L     + +  +F T  A+++     ++ GL+ 
Sbjct: 331 ELHILNEVFTNPKVVKVLHGAISDIEWLQRDLSLYIVNMFDTGEAAKVLE--FSRIGLQF 388

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            LK    I+  KA Q +DW    +    ++YA  D  +L  +  +   +L   G
Sbjct: 389 LLKHYCNIDTDKAYQLADWRIRPIPHNFIEYARKDTHYLLYIYDRMRNELIAKG 442


>gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
 gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
          Length = 702

 Score =  157 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 2/168 (1%)

Query: 7   HEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           H+G +      + V   AVD E       +   C++Q+S       +  +         L
Sbjct: 157 HKGLVELAKKLKGVTEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIYIGLYL 216

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
                D  + K+ H    DI  L   F + V  +F T  ASR+      ++ L+  L   
Sbjct: 217 QEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVL--QMERNSLEHLLLHF 274

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            G+   K  Q++DW +  L DE ++YA  D  +L  +     ++LQ+ 
Sbjct: 275 CGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQKE 322


>gi|225021280|ref|ZP_03710472.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946013|gb|EEG27222.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 408

 Score =  157 bits (399), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 7/177 (3%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           +  A+     AVDTE +      +R+C++Q+   G GT+ I   +  Q     +  +L D
Sbjct: 30  DRLAQGTGWCAVDTERVSGFRYHNRVCLLQIRRAGAGTMLIDVESDPQATTDFMGRVLAD 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
                + H    D+  L     +R   +F T++A R    +  +  L   ++  LG+ + 
Sbjct: 90  TG--WVVHAATSDLPYLEQ-LRLRPAQLFDTELAGRFLGFH--RVNLAAMVEYYLGVRLR 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFLM 188
           K     DWS   +  E L YAA DV +L  L      +L +   + +     C++L 
Sbjct: 145 KNHGGEDWSRRPIPSEWLDYAALDVEYLLPLADAMRSELTQQSPKDEWVAEECDYLT 201


>gi|302415657|ref|XP_003005660.1| 3'-5' exonuclease domain-containing protein [Verticillium
           albo-atrum VaMs.102]
 gi|261355076|gb|EEY17504.1| 3'-5' exonuclease domain-containing protein [Verticillium
           albo-atrum VaMs.102]
          Length = 894

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 10/204 (4%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +  +EG +      +    IAVD E          L ++Q+S  D    +  +   +   
Sbjct: 271 VDTYEGVLEMLGELKKAKEIAVDLEHHDTRTYAGLLSLMQISTRDQDWIVDTLKPWRHQL 330

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  + K  K+FH    D+  L    G+ +  +F T  A+ +      Q  L   L
Sbjct: 331 EVLNEVFTNPKIVKVFHGAHMDMQWLQRDLGLYINGLFDTFFAAEILGY--PQRSLAYLL 388

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF-TEKLQRLGR----SD 178
           K  +  +  K  Q +DW    L +E   YA SD  +L  +  +   E L    R    +D
Sbjct: 389 KRFVDFDADKKYQMADWRIRPLPEEMFYYARSDTHYLLYIFDRIRNELLDASDRSKPETD 448

Query: 179 LATSCCNFLMDRAELDLLGWENVD 202
           +       L    EL L  +E +D
Sbjct: 449 IIQQ---VLQKSKELSLSRYEGLD 469


>gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
 gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
          Length = 512

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 6/172 (3%)

Query: 11  IPA----ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +PA        R    IAVD E       +  +C++Q+S       +  +       P L
Sbjct: 230 LPALETMAAKLRASSEIAVDLENHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVL 289

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +  +    K+ H    DI  L   FG+ V  +F T  A+R+ R    + GL   L+  
Sbjct: 290 RSVFANPSIRKVIHGSDRDILWLQRDFGIYVCNLFDTGQAARVLRM--ERFGLAFLLQTF 347

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             +   K  Q +DW    LS E L+YA  D  +L  +  +    L+    ++
Sbjct: 348 CEVTPDKRYQLADWRLRPLSAEMLKYAREDTHYLLYVYDKMKGLLRDAETTE 399


>gi|262372600|ref|ZP_06065879.1| ribonuclease D [Acinetobacter junii SH205]
 gi|262312625|gb|EEY93710.1| ribonuclease D [Acinetobacter junii SH205]
          Length = 380

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 7/196 (3%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M      + D+        +    A+DTE + +     +L + Q++  D    +    A 
Sbjct: 1   MFQFIQQQKDLAVLLNQMEHCSTYALDTEFIKVDTLYPKLGVCQINVNDQVSLLD--GAA 58

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHG 118
              +     +   ++   IFH    DI ++++    +  + VF T++A      +  Q  
Sbjct: 59  LDLSDFWRKVFEAQQ--NIFHACGEDIDLIYHYADQKPLKNVFDTQVAMAFL-GHGLQVS 115

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            ++ LK  L I+I K Q  SDW A  LS EQ+ YAA+DV++L+ L  +    LQ  G   
Sbjct: 116 YQNALKTCLNIDIDKDQTRSDWLARPLSQEQMSYAANDVLYLNKLAERLKFDLQTKGLYS 175

Query: 179 LATSCCNFLMDRAELD 194
                C  L     L+
Sbjct: 176 YVLEDCQNLTKEIALE 191


>gi|283458265|ref|YP_003362884.1| ribonuclease D [Rothia mucilaginosa DY-18]
 gi|283134299|dbj|BAI65064.1| ribonuclease D [Rothia mucilaginosa DY-18]
          Length = 449

 Score =  157 bits (398), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 76/189 (40%), Gaps = 9/189 (4%)

Query: 2   TTIRVHEGDI--PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
            T+   E  +   AE  A     +AVDTE    +    R  +VQL   D    I   A  
Sbjct: 64  PTLITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGSRAFLVQLKREDQLYLIDPEAF- 122

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
            K+   +   L D   E + H    D   L    G+R   +F T++ +RL      +  L
Sbjct: 123 -KDLRIINDALADA--EWVIHAAIQDFPSL-DMLGMRPNRLFDTELGARLAG--LERVNL 176

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
              ++ELLG  ++K     DWS   L +  L YA  DV  L  LR    + L++ G+   
Sbjct: 177 GATVEELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQY 236

Query: 180 ATSCCNFLM 188
           A     +L 
Sbjct: 237 ALEEFEYLC 245


>gi|71065355|ref|YP_264082.1| putative ribonuclease D [Psychrobacter arcticus 273-4]
 gi|71038340|gb|AAZ18648.1| putative ribonuclease D [Psychrobacter arcticus 273-4]
          Length = 432

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 68/172 (39%), Gaps = 6/172 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A      +A+DTE +       RL +VQL+ G+    +      Q     L   L+    
Sbjct: 65  ALATCGRVALDTEFIKRDTYYPRLALVQLNTGNHVYLLDAP---QLQLSELWQALIKVDV 121

Query: 76  EKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             I+H    D+ + +   G      +F T+IA         Q G +  L E L ++I K 
Sbjct: 122 A-IWHACGEDLGIFYLLSGCPPLTNIFDTQIALSYLTGQL-QMGYQQALDEQLDMHIDKE 179

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           Q  SDW    LSDEQ QYA  DV  L AL L     L+  G        C  
Sbjct: 180 QSQSDWLQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQGLYGYVWEDCRL 231


>gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 906

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 2/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +     AVD E       +   C++Q+S       +  +        NL  +  D  ++
Sbjct: 282 LKSATEFAVDLEHNHYRSFQGLTCLMQISTRTEDFIVDTLKLRNCLGENLREVFQDPTKK 341

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L   FG+ V  +F T  ASR+     +++ L+  L+   G+  +K  Q
Sbjct: 342 KVMHGAGRDIIWLQRDFGIYVCNLFDTGQASRIL--QMDRNSLEHLLQYFCGVTANKEYQ 399

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           S+DW    L DE  +YA  D  +L  +      +L   
Sbjct: 400 SADWRLRPLPDEMTKYAREDTHYLLYIYDLMRLRLVNE 437


>gi|322815315|gb|EFZ23992.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
          Length = 713

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%)

Query: 10  DIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+    A    +  IAVD E       +   C++Q+S     + I      +     L  
Sbjct: 221 DLEEVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTRSEDILID-CLKLRSLMHLLAP 279

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + ++    K+ H  R DI  L   FG+ +   F T IA    +T    HGL   +     
Sbjct: 280 VFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIA---LQTLHMPHGLAFAVDHFCQ 336

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179
           + + K  Q++DW    +  E + YA  D   L  +  +     L   GR+ +
Sbjct: 337 VKLDKKYQTADWRIRPIPAEMVTYARQDTHFLLYVYDRLKTLLLNSEGRASI 388


>gi|296117768|ref|ZP_06836352.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
 gi|295969499|gb|EFG82740.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
          Length = 411

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 4/176 (2%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            A   A+    IA+DTE        DR  ++QL   D  + ++     + +   ++  +V
Sbjct: 25  AARILAQGSGPIAIDTERASSFRYDDRAFLIQLRRADTPIFLVAPEGIRDDVREVLAPVV 84

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           + ++  + H    D+  L    G+    +F T++A RL         L    +E LGI +
Sbjct: 85  NGEK-WVVHAAVTDLTSL-AWLGLYPGSLFDTEVAGRLLGIQNP--NLASVTEEFLGIEL 140

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            K   ++DWS   LS  QL YAA DV  L  L  +   +L++  +++ A      +
Sbjct: 141 DKGYGATDWSRFPLSKAQLIYAALDVDTLLELADEMAYELEQEDKTEWAQEEFAVI 196


>gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens]
          Length = 529

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L +E L YA  D  +L  +  +   ++   G
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459


>gi|262202194|ref|YP_003273402.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
 gi|262085541|gb|ACY21509.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
          Length = 447

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 7/170 (4%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
             +AVDTE         R  ++Q+   G GT  +  I      AP +  +      E + 
Sbjct: 69  GPVAVDTERASGYRYSQRAYLIQIRRRGAGTFLLDPIDEPDALAPVIDAL---RGPEWVL 125

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L    G     ++ T++A RL      +  L   + E LG+ + K   ++D
Sbjct: 126 HAADQDLPCL-RELGFVCAELYDTELAGRLLG--LAKVNLAAMVAEFLGLGLRKGHGAAD 182

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           WS   L D+ L YAA DV  L  LR      L   G+   A     ++++
Sbjct: 183 WSRRPLPDDWLNYAALDVEVLVELRDAMDAALAAAGKDRWAREEFAYVLN 232


>gi|310792006|gb|EFQ27533.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
          Length = 882

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 2/168 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +  +EG +      +  + IAVD E            ++Q+S  +    +  +   ++  
Sbjct: 224 VDTYEGVLEMLEDLKKANEIAVDLEHHDFRTYVGLTSLMQISTREKDWIVDTLKPWREQL 283

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  D    K+FH    D+  L    G+ V  +F T +A  +      Q  L   L
Sbjct: 284 QVLNEVFADPSIIKVFHGAFMDMVWLQRDLGLYVNGLFDTGMACEVLHY--PQKSLAFLL 341

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           K+ +  +  K  Q +DW    LS+E L YA SD  +L  +  +   +L
Sbjct: 342 KKFVNFDADKKYQLADWRVRPLSEEMLYYARSDTHYLLYIYDKMRNEL 389


>gi|126328718|ref|XP_001364197.1| PREDICTED: similar to exosome component 10, isoform 1 [Monodelphis
           domestica]
          Length = 861

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 3/149 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
             VD E           C++Q+S       II     + +   L     D    K+FH  
Sbjct: 286 FGVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDLYILNESFTDPSIVKVFHGA 344

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+R+      +H L   LK    +  +K  Q +DW  
Sbjct: 345 DMDIEWLQKDFGLYVVNMFDTHQAARILNLG--RHSLDHLLKLYCNVESNKQYQLADWRI 402

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             L +E   YA  D  +L  +  +    L
Sbjct: 403 RPLPEEMFNYARHDTHYLLYIYDKMRSDL 431


>gi|237835553|ref|XP_002367074.1| exosome component 10, putative [Toxoplasma gondii ME49]
 gi|211964738|gb|EEA99933.1| exosome component 10, putative [Toxoplasma gondii ME49]
          Length = 1353

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 2/162 (1%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           ++  E ++     +A+D E       R   C++QLS  +    I   A    +   L  +
Sbjct: 472 ELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYIIDPFALF-DHLHVLNTI 530

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             + K  KIFH    DI  L   F V V  +F T +A+R          L + L+    +
Sbjct: 531 TANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPGGA-SLANLLQTYCHV 589

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             +K  Q +DW    L+ E   YA SD  +L  +      +L
Sbjct: 590 EANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQL 631


>gi|221485391|gb|EEE23672.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii GT1]
          Length = 1353

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 2/162 (1%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           ++  E ++     +A+D E       R   C++QLS  +    I   A    +   L  +
Sbjct: 472 ELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYIIDPFALF-DHLHVLNTI 530

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             + K  KIFH    DI  L   F V V  +F T +A+R          L + L+    +
Sbjct: 531 TANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPGGA-SLANLLQTYCHV 589

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             +K  Q +DW    L+ E   YA SD  +L  +      +L
Sbjct: 590 EANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQL 631


>gi|255730563|ref|XP_002550206.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132163|gb|EER31721.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 786

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 3/161 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +  + IAVD E          +C++Q+S  D    I  +A  +     L  +  +    
Sbjct: 248 LKKSEEIAVDLEHHDFRTYYGIVCLMQISNRDQDWIIDTLAL-RDELTELNEVFTNPNIV 306

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ +  +F T  ASR      ++  L   L+       SK  Q
Sbjct: 307 KVFHGAFMDIIWLQRDLGLYIVSLFDTYHASRALG--LSRFSLAYLLEHYAQFKTSKKYQ 364

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            +DW    LS   L YA SD   L  +  Q   KL    + 
Sbjct: 365 LADWRIRPLSSPMLAYARSDTHFLLYIYDQLKNKLIDSDKL 405


>gi|221506253|gb|EEE31888.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii VEG]
          Length = 1353

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 2/162 (1%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           ++  E ++     +A+D E       R   C++QLS  +    I   A    +   L  +
Sbjct: 472 ELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYIIDPFALF-DHLHVLNTI 530

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             + K  KIFH    DI  L   F V V  +F T +A+R          L + L+    +
Sbjct: 531 TANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPGGA-SLANLLQTYCHV 589

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             +K  Q +DW    L+ E   YA SD  +L  +      +L
Sbjct: 590 EANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQL 631


>gi|293334443|ref|NP_001170525.1| hypothetical protein LOC100384536 [Zea mays]
 gi|238005848|gb|ACR33959.1| unknown [Zea mays]
          Length = 666

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 2/171 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           ++ H+G        + V   AVD E       +   C++Q+S       +  +       
Sbjct: 154 VQDHKGLTELAKKLKSVTEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIYIG 213

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L     D  + K+ H    DI  L   F + V  +F T  ASR+      ++ L+  L
Sbjct: 214 LYLQEPFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQASRVL--QMERNSLEHLL 271

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
               G+   K  Q++DW +  L DE ++YA  D  +L  +     ++LQR 
Sbjct: 272 LHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQRE 322


>gi|126328720|ref|XP_001364275.1| PREDICTED: similar to exosome component 10, isoform 2 [Monodelphis
           domestica]
          Length = 836

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 3/149 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
             VD E           C++Q+S       II     + +   L     D    K+FH  
Sbjct: 286 FGVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDLYILNESFTDPSIVKVFHGA 344

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+R+      +H L   LK    +  +K  Q +DW  
Sbjct: 345 DMDIEWLQKDFGLYVVNMFDTHQAARILNLG--RHSLDHLLKLYCNVESNKQYQLADWRI 402

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             L +E   YA  D  +L  +  +    L
Sbjct: 403 RPLPEEMFNYARHDTHYLLYIYDKMRSDL 431


>gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
           (ISS) [Ostreococcus tauri]
 gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
           (ISS) [Ostreococcus tauri]
          Length = 701

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 4/180 (2%)

Query: 4   IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + V   D   E A         AVD E       +   C++Q+S  +    +  +A    
Sbjct: 120 VVVDTEDALEELATHLEQCKEFAVDLEHHSYRSFKGFTCLMQVSTREKDFVVDVLALRSL 179

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L     D    K+ H    D+  L   FG+ V  +F T  A+R+         L  
Sbjct: 180 VRDALGKAFADPNTLKVMHGADNDVQWLQKDFGIFVSCLFDTGQAARVLE--LPSKALAY 237

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            L+   GI  +K  Q +DW    L+ E L YA  D  +L  +  +  + L   G + +A 
Sbjct: 238 LLQHYCGIKANKKFQLADWRVRPLTREMLDYARGDTHYLLYVYDELKKALAARGENSIAA 297


>gi|295394778|ref|ZP_06804993.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972374|gb|EFG48234.1| ribonuclease D [Brevibacterium mcbrellneri ATCC 49030]
          Length = 385

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 8/180 (4%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           A   A     + +DTE    +   +R  +VQL   G G V I   +       ++   L 
Sbjct: 23  ATQLAHGHGPVGIDTERASGIRYGNRAFLVQLKREGAGIVLID--SEALPVLSSVNAALH 80

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
               E I H    D+  L    G+R   +F T++A+RL      + GL    +E++G+ +
Sbjct: 81  --GVEWILHAATQDLGCLAEK-GMRPDALFDTELAARLLN--FERFGLASLTEEIMGVTL 135

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           +K   + DWS   L  E L YAA DV  L+ LR +  ++L   G+ + A    + L+  A
Sbjct: 136 AKEHSAVDWSTRPLPHEWLAYAALDVEVLNHLRTELADRLHAQGKWEYARQEFDHLLSFA 195


>gi|86740037|ref|YP_480437.1| 3'-5' exonuclease [Frankia sp. CcI3]
 gi|86566899|gb|ABD10708.1| 3'-5' exonuclease [Frankia sp. CcI3]
          Length = 427

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 12/174 (6%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDE--KR 75
            +  +A D E         R  +VQ+   G G++ +  IA    +      ++ D     
Sbjct: 42  GIGPVAFDAERASGYRYSQRAYLVQIRRRGTGSLLLDPIALEDLS------VIQDAVGGV 95

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           E + H    D+  L    G+R   +F T++A RL      + GL   ++ +LG  + K  
Sbjct: 96  EWVLHAASQDLPCLS-ELGLRPSLLFDTELAGRLLGY--ERVGLGIMVERVLGYGLEKGH 152

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            ++DWS   L +  L+YAA DV  L  LR     +L    + + A      ++ 
Sbjct: 153 SAADWSTRPLPEPWLRYAALDVELLVELRDALEAELIEQNKIEFARQEFAAIVA 206


>gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia]
          Length = 669

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 2/163 (1%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           E        IAVD E    +      C++QLS       I      ++    L  +  + 
Sbjct: 211 EVDQNGFSEIAVDLEHNHSISYLGVTCLIQLSTRTQDYIIDPFPLWKQLGDMLSVVFTNP 270

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           +  K+FH    D+  L   FG+ +  +F T  AS+       Q+  +  L E    +  K
Sbjct: 271 RIVKVFHGADNDVQWLQRDFGLYIVNLFDTFQASK--ELLLMQNSFQFLLSEYCKKSTDK 328

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             Q++DW+   LSDE ++YA  D  +L  +  +  + L++L +
Sbjct: 329 TYQTADWTQRPLSDEMIKYAQIDTHYLLYIYDRMRQDLKKLNK 371


>gi|167527362|ref|XP_001748013.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773431|gb|EDQ87070.1| predicted protein [Monosiga brevicollis MX1]
          Length = 837

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 3/159 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            + V  +A+D E       +   C++QLS       I  +A  + +   L  +  D    
Sbjct: 282 LKSVSELAIDLEAHSYRTYQGFTCLMQLSTRSEDYLIDTLAL-RDDLKLLNVIFADPAIL 340

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L     + +  +F T  A+R+      +H L   L+        K  Q
Sbjct: 341 KVLHGADSDILWLQRDHSLYIVNMFDTGQATRVLN--FPRHSLAWLLQHYCNFKADKKYQ 398

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +DW    LS+E L YA  D   L  +  +   +L   G
Sbjct: 399 LADWRVRPLSEEMLHYARCDTHFLLYIYDRLHSELLAQG 437


>gi|260950129|ref|XP_002619361.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
 gi|238846933|gb|EEQ36397.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
          Length = 738

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 8/196 (4%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A R    IA+D E           C++Q+S  +    +  +A    +  +L  +  +   
Sbjct: 234 ALRSSTEIAIDLEHHDYRSYYGITCLMQISNREQDWIVDTLAL-HDDLRDLNEIFANPAI 292

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+ H    DI  L    G+ +  +F T  AS+       +  L   L+       SK  
Sbjct: 293 LKVLHGANMDIIWLQRDLGLYIVSLFDTYHASKKLG--FPKFSLAYLLENFAHFKTSKKY 350

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDLATSCCNFLMDRAEL 193
           Q +DW    L+D  +QYA +D   L  +  Q   KL     G+          +  R   
Sbjct: 351 QLADWRIRPLTDAMMQYARADTHFLLNIYDQLRNKLLNAGQGKVQEVLYESRKVASR-RF 409

Query: 194 DLLGW--ENVDIFSHS 207
           +   +  +  D + HS
Sbjct: 410 EFNSFKQDQTDNWMHS 425


>gi|313242411|emb|CBY34559.1| unnamed protein product [Oikopleura dioica]
          Length = 420

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 3/152 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    +AVD E       +   C+VQ+S       +  +A  +     L  +  + K  
Sbjct: 272 LREESELAVDLEHHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMY-KLNEVFANPKIV 330

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KIFH  R D+  L   FGV V  +F T  A++       +  L   L+    I + K  Q
Sbjct: 331 KIFHGSRNDMLWLQRDFGVYVVNLFDTFFAAKKLD--LAKKSLDYLLQHYCKIRLDKRFQ 388

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            +DW    +    L+YA  D  +L  +  +  
Sbjct: 389 LADWRMRPIPPNMLRYARQDTHYLLYVYDRLR 420


>gi|294654453|ref|XP_456510.2| DEHA2A04334p [Debaryomyces hansenii CBS767]
 gi|199428893|emb|CAG84465.2| DEHA2A04334p [Debaryomyces hansenii]
          Length = 776

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 60/160 (37%), Gaps = 3/160 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
                  IA+D E          +C++Q+S  D    II     + +  +L  +  +   
Sbjct: 246 LLSEQSEIAIDLEHHDYRSYYGIVCLMQISSRDQD-WIIDTLKLRDDLESLNKVFTNPDI 304

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L    G+ +  +F T  AS+       +  L   L+       SK  
Sbjct: 305 VKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKKLG--FPKFSLAYLLETFANFKTSKKY 362

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q +DW    LS   L YA SD   L  +  Q   KL   G
Sbjct: 363 QLADWRIRPLSPPMLAYARSDTHFLLNIYDQLRNKLIDAG 402


>gi|328776419|ref|XP_003249163.1| PREDICTED: exosome component 10-like [Apis mellifera]
          Length = 1271

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + I++   D+      +    IAVD E       +   C++Q+S  D    I  ++  + 
Sbjct: 266 SDIKLLINDL------KQYKEIAVDLEHHSYRSFQGITCLMQISTEDKDYLIDTLSL-RS 318

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +       K+FH    DI  L     + V  +F T  A++          L  
Sbjct: 319 ELHELNEIFTKPTILKVFHGADLDIQWLQRDLSLYVVNMFDTHQAAKQLN--LPYLSLAY 376

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            LK    ++  K  Q +DW    L ++ ++YA  D  +L  ++      L
Sbjct: 377 LLKHYCNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYIKDMLKNAL 426


>gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva]
          Length = 996

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 6/181 (3%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I  +E D  +     + +  +++D E       R  +C+VQLS  +    I       K 
Sbjct: 474 IIDNEADFNSMLDKLKNIRVLSLDVEHHDTETYRGFICLVQLSTPEENYIIDPFKIFGKM 533

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +  D K  KI H    D+  L   F + V  +F T+ A+++      +  L   
Sbjct: 534 N-KLNRLTTDPKILKIMHGASNDVVWLQRDFNIFVVNLFDTREAAKVLN--LAEQSLAKL 590

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDLA 180
           +++   I ++K  Q SDWS   L  E L YA  D  +L  L     +++  +  GR  + 
Sbjct: 591 IQKYFNIKLNKRFQLSDWSKRPLDAEMLDYACCDSHYLIPLYSALKDEILSKEDGRVKII 650

Query: 181 T 181
            
Sbjct: 651 Q 651


>gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL
           Brener]
 gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
          Length = 768

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 6/172 (3%)

Query: 10  DIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           D+    A    +  IAVD E       +   C++Q+S     + I      + +   L  
Sbjct: 276 DLEDVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTRSEDILID-CLKLRSSMHLLAP 334

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + ++    K+ H  R DI  L   FG+ +   F T IA    +T    HGL   +     
Sbjct: 335 VFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIA---LQTLHMPHGLAFAVDHFCQ 391

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179
           + + K  Q++DW    +  E   YA  D   L  +  +     L   GR+ +
Sbjct: 392 VKLDKKYQTADWRIRPIPAEMATYARQDTHFLLYVYDRLKTLLLNSEGRASI 443


>gi|158291195|ref|XP_312669.4| AGAP002300-PA [Anopheles gambiae str. PEST]
 gi|157018260|gb|EAA07463.4| AGAP002300-PA [Anopheles gambiae str. PEST]
          Length = 969

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E       +   C++QLS       +  +A  +     L  +  D K+ 
Sbjct: 284 LQAAKEIAIDLEHHSYRSYQGFTCLMQLSTRTKDYIVDALAL-RDELHVLNEVFTDPKKL 342

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ +  +F T  A+R+     ++ GL+  LK    I+  KA Q
Sbjct: 343 KVLHGSVSDIEWLQRDLGLYLVNMFDTGEAARVL--QFSRIGLQFLLKHYCNIDTDKAFQ 400

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +DW    + +  ++YA  D  +L  +  +   +L   G
Sbjct: 401 LADWRIRPIPENFIEYARKDTHYLLYIYDRMRNELLEKG 439


>gi|193697404|ref|XP_001951643.1| PREDICTED: exosome component 10-like [Acyrthosiphon pisum]
          Length = 739

 Score =  155 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 3/155 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           V+ +A+D E       +   C++Q+S  +    II     +     L  +  +    K+F
Sbjct: 228 VNELAIDLEAHSYRTYQGFTCLMQISTRNAD-YIIDTLYLRDKLHVLNEIFTNPAVVKVF 286

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    DI  L    G+ V  +F T  A+++     ++ GL+  LK    ++  K  Q  D
Sbjct: 287 HGADSDIPWLQRDLGLYVVNMFDTYQAAKILN--FSRKGLEFLLKHYCNVDADKTFQLYD 344

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           W    LS E + YA  D  +L  +     + L  +
Sbjct: 345 WRTRPLSTEAIFYARCDTHYLLYVYDMIKKDLMAM 379


>gi|84496254|ref|ZP_00995108.1| putative ribonuclease D [Janibacter sp. HTCC2649]
 gi|84383022|gb|EAP98903.1| putative ribonuclease D [Janibacter sp. HTCC2649]
          Length = 428

 Score =  155 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 8/169 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
            +AVD E         R  ++Q+   G GT  I  IA    +   L   +   + E I H
Sbjct: 67  PVAVDAERASGYRYGQRAYLIQVRREGSGTWLIDPIAC--PDLSPLNDAIG--RAEWILH 122

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+A L    G+R   +F T++ +RL      + GL   ++  LG+ ++K   + DW
Sbjct: 123 AATQDLACL-AEVGLRPVQLFDTELGARLLG--LPRVGLAAVVEHYLGLALAKEHSAVDW 179

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           S   L +  L+YAA DV  L  LR      L R  +S+ A      L+ 
Sbjct: 180 STRPLPEPWLRYAALDVEVLTELRNLMGVDLARQDKSEWARQEFEALLT 228


>gi|254566215|ref|XP_002490218.1| Exonuclease component of the nuclear exosome [Pichia pastoris
           GS115]
 gi|238030014|emb|CAY67937.1| Exonuclease component of the nuclear exosome [Pichia pastoris
           GS115]
 gi|328350615|emb|CCA37015.1| exosome complex exonuclease RRP6 [Pichia pastoris CBS 7435]
          Length = 717

 Score =  155 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 63/161 (39%), Gaps = 3/161 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
               D IAVD E   L      +C++Q+S  +    +  +    K  P L  +  D    
Sbjct: 228 LSKADVIAVDLEHHDLRTYYGLVCLMQISTRNQDYIVDTLKLRFKLQP-LNKVFTDPSIV 286

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ V  +F T  AS+L      +H L   L+       SK  Q
Sbjct: 287 KVFHGAFMDIIWLQRDLGLYVVSLFDTFHASKLLG--FPKHSLAYLLETYAKFKTSKKYQ 344

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            +DW    L+   L YA SD   L  +  Q    L   G+ 
Sbjct: 345 LADWRVRPLTKPLLAYARSDTHFLLYIFDQLNNMLIESGKL 385


>gi|209881893|ref|XP_002142384.1| exosome component 10 [Cryptosporidium muris RN66]
 gi|209557990|gb|EEA08035.1| exosome component 10, putative [Cryptosporidium muris RN66]
          Length = 1029

 Score =  155 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 2/154 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            +A+D E   +   R  +C++Q+S       I      +     L  +  + +  K+FH 
Sbjct: 400 VLAIDLEHHSMQTFRGFVCLIQMSTRTCDYIIDPFPLFE-ELSRLNELTTNPRILKLFHG 458

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
             +DI  L   F V V  +F T  A+R+  T    + L + L     +  +K  Q SDW 
Sbjct: 459 SDYDIIWLQRDFSVYVVNMFDTGQAARVLNTPG-GYSLGNLLNLYCSVEANKQYQLSDWR 517

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
              L    ++YA SD  +L  +      +L  LG
Sbjct: 518 ERPLPQHLIEYARSDTHYLPYIYDIMKNQLLLLG 551


>gi|317125038|ref|YP_004099150.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043]
 gi|315589126|gb|ADU48423.1| 3'-5' exonuclease [Intrasporangium calvum DSM 43043]
          Length = 418

 Score =  155 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 8/172 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
               I VD E         R  +VQ+   G GTV +  +A    +   L   + D   E 
Sbjct: 47  GSGPIGVDAERASGYRYGQRAYLVQVRRQGAGTVLLDPVAV--PDLSPLDRAIGDA--EW 102

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+ V     G++ R +F T++  RL      + GL   ++  LG+ ++K   +
Sbjct: 103 ILHAATHDL-VCLAEVGLQPRVLFDTELGGRLAG--LPRVGLGAMVEHYLGLQLAKEHSA 159

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            DWS   L +  L+YAA DV  L  LR      L+R G++  A      L+ 
Sbjct: 160 VDWSIRPLPEPWLRYAALDVEVLVDLRHAVHADLERQGKAGWAAEEFQSLLQ 211


>gi|223939512|ref|ZP_03631388.1| 3'-5' exonuclease [bacterium Ellin514]
 gi|223891784|gb|EEF58269.1| 3'-5' exonuclease [bacterium Ellin514]
          Length = 372

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 6/168 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              +A+DTE   L    +++C++Q++   G   I  ++    +   L+        E I 
Sbjct: 34  TPWVALDTEADSLHAYPEKVCLLQITTPLGDELIDPLSGINLD--PLLDTFG--GHELIM 89

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H   +D+ +L        + +F T +ASRL      Q GL   +   LG+ + K  Q +D
Sbjct: 90  HGSDYDLRLLRKHHAFVPKAIFDTMLASRLLGH--TQFGLVHLVAHYLGVTLEKGSQKAD 147

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           W+   L+     YA +D  +L  L  +    L+  GR       C  L
Sbjct: 148 WAKRPLTPRMEAYARNDTHYLKHLADRLKSDLEVKGRLGWHQELCARL 195


>gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia]
          Length = 676

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 6/180 (3%)

Query: 1   MTTIRVHEGDI----PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           M T   H G++      E        IAVD E    +      C++QLS       I   
Sbjct: 194 MITNADHLGELVLKIQQEVDQNGFSEIAVDLEHNHQISYLGITCLIQLSTRSQDYIIDPF 253

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              ++    L  +  + K  K+FH    D+  L   FG+ +  +F T  AS+       Q
Sbjct: 254 PLWKQLGDMLSVIFANPKIVKVFHGAENDVQWLQRDFGLYIVNLFDTFHASK--ELQLMQ 311

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           +  +  L E    +  K  Q++DW+   L DE ++YA  D  +L  +  +  + L++L +
Sbjct: 312 NSFQFLLSEYCKKSTDKTYQTADWTQRPLPDEMIKYAQIDTHYLLYIYDRMRQDLKKLNK 371


>gi|297626438|ref|YP_003688201.1| ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922203|emb|CBL56771.1| Ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 445

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 11/182 (6%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------NAPNLV 67
           E  A     +A+DTE         R  ++Q    D    +I   A Q       +   L 
Sbjct: 50  EALASGTGPVAIDTERAQSFRYTARAYLLQFRRTDSGTWLIDPQAFQPSDGSLADFSALR 109

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
             +     E I H    D+  L    G+    +F T++A RL      +  L   +++  
Sbjct: 110 EAIA--SAEWIIHAATQDLPCLV-EIGLYPSRLFDTELAGRLLG--FPRVSLGTMIEQHF 164

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           G+++ K   ++DWS   L  + + YAA DV  L  LR    ++L   G+ + A      L
Sbjct: 165 GVHLLKEHSAADWSRRPLPPDWIAYAALDVELLIELRNLVADELVAAGKKEWADEEFAHL 224

Query: 188 MD 189
           +D
Sbjct: 225 VD 226


>gi|311258442|ref|XP_003127631.1| PREDICTED: exosome component 10-like [Sus scrofa]
          Length = 759

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/142 (28%), Positives = 57/142 (40%), Gaps = 3/142 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 310 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    +  +K  Q +DW  
Sbjct: 369 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCSVESNKQYQLADWRI 426

Query: 143 DDLSDEQLQYAASDVVHLHALR 164
             L +E L YA  D  +L  + 
Sbjct: 427 RPLPEEMLSYARDDTHYLLYIY 448


>gi|118372761|ref|XP_001019575.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89301342|gb|EAR99330.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 881

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 5/170 (2%)

Query: 4   IRVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + V + DI  E   + +    +A+D E           C++Q+S       I+ + +  K
Sbjct: 245 VFVDKEDILDEMIESLKQCSEVAIDLEHHSYRSFNGITCLMQISSRTKD-YIVDVFSVWK 303

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +   L  +  D+   K+ H    DI  L   FG+ +  +F T  A+R        + L  
Sbjct: 304 SLHKLNAVTTDKNIVKVLHGADMDIQWLQRDFGIYIVNLFDTGQAARTLSM--PSYALAY 361

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            L+ +  +   K  Q +DW    L  E + YA SD  +L ++      +L
Sbjct: 362 LLQSISKVPTDKKYQLADWRIRPLPREMISYARSDTHYLLSIYDNLRIQL 411


>gi|269956679|ref|YP_003326468.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
 gi|269305360|gb|ACZ30910.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
          Length = 420

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 16/188 (8%)

Query: 10  DIPAECA------ARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKN 62
           D PA  A      A     +A D E            +VQL   G GT  +  +A     
Sbjct: 40  DSPAGLAKVVAAFAGGRGPVAADCERASGYRYGQSTFLVQLRREGAGTALLDPVA----- 94

Query: 63  APNLVGM-LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
            P+L  +       E I H    D+  L    G+R   VF T++A+RL      + GL  
Sbjct: 95  LPDLSAIGAAVGDVEWILHAASQDLPGLAEH-GLRPASVFDTELAARLLG--LERVGLAA 151

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            + + LG+ ++K   + DWS   L  + L+YAA DV  L  +R    E+L   G+S+ A 
Sbjct: 152 VVADTLGLGLAKEHSAVDWSTRPLPVDWLRYAALDVEVLGEVRDVLAERLADAGKSEWAA 211

Query: 182 SCCNFLMD 189
                +  
Sbjct: 212 QEFEAVRT 219


>gi|39973915|ref|XP_368348.1| hypothetical protein MGG_00896 [Magnaporthe oryzae 70-15]
 gi|145018155|gb|EDK02434.1| hypothetical protein MGG_00896 [Magnaporthe oryzae 70-15]
          Length = 854

 Score =  155 bits (393), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 2/171 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +  +EG +      +    IAVD E          L ++Q+S  +    +  +   ++  
Sbjct: 260 VDTYEGVLEMLEDLKQAKEIAVDLEHHDFRTYHGLLSLMQISTREKDWIVDTLKPWRQQL 319

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  D    K+FH    DI  L    G+ V  +F T  A+           L   L
Sbjct: 320 EILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLFDTFHAAEALMY--PSKSLAYLL 377

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           K+ +     K  Q++DW    L +E L YA SD  +L  +      +L R 
Sbjct: 378 KKFVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLYVYDMMRNELLRQ 428


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 5/195 (2%)

Query: 6   VHEGDI-PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           +H  D+ P          IAVDTET GL P   +L ++QL+  D  V +I   +      
Sbjct: 12  LHPADLVPYMEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAEDLPVLVIDCFSFLPEGR 71

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDN 122
            L+  ++     K+F   +FD+  L     +    +F T +AS+L R      Q  LK  
Sbjct: 72  ELINAILSTSGVKVFQNAKFDLQFLM-ALDIFPPTLFDTMLASQLLRGSGGPVQSNLKAL 130

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +  L  ++ K +Q+S+W   +L++ Q+ YAA D   L  LR     ++     + +A  
Sbjct: 131 AQHYLNEDLDKEEQTSNW-QGELTESQILYAARDAEILLRLRKVMIPQILENHLTQIAEI 189

Query: 183 CCNFLMDRAELDLLG 197
               +   A L+  G
Sbjct: 190 EFRCVKAMAHLEYRG 204


>gi|63054485|ref|NP_593004.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe 972h-]
 gi|6226742|sp|Q10146|RRP6_SCHPO RecName: Full=Exosome complex exonuclease rrp6; AltName:
           Full=Ribosomal RNA-processing protein 6
 gi|159883898|emb|CAA93168.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe]
          Length = 777

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 7/183 (3%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            E  +       +    IAVD E       R  +C++Q+S  +    I+     ++    
Sbjct: 223 TESQLSDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKD-WIVDTLELREELEA 281

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +  +    K+FH    DI  L   FG+ V  +F T  A+++       HGL   L++
Sbjct: 282 LNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLG--FEGHGLAFLLQK 339

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL---QRLGRSDLATS 182
               +  K  Q +DW    L  E L+YA SD  +L  +      +L       + +L  S
Sbjct: 340 YCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLMQS 399

Query: 183 CCN 185
             N
Sbjct: 400 VFN 402


>gi|255327433|ref|ZP_05368506.1| ribonuclease D [Rothia mucilaginosa ATCC 25296]
 gi|255295501|gb|EET74845.1| ribonuclease D [Rothia mucilaginosa ATCC 25296]
          Length = 421

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 7/177 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            AE  A     +AVDTE    +    R  +VQL   D    I   A   K+   +   L 
Sbjct: 48  AAEQLAAASGPVAVDTERAQGIRYGSRAFLVQLKREDQLYLIDPEAF--KDLRIINDALA 105

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D   E + H    D   L    G+R   +F T++ +RL      +  L   ++ELLG  +
Sbjct: 106 DA--EWVIHAAIQDFPSL-DMLGMRPNRLFDTELGARLAG--LERVNLGAAVEELLGYKL 160

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           +K     DWS   L +  L YA  DV  L  LR    + L++ G+   A     +L 
Sbjct: 161 AKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDAMEDLLRQQGKLQYALEEFEYLC 217


>gi|321254177|ref|XP_003192989.1| exosome complex exonuclease RRP6 [Cryptococcus gattii WM276]
 gi|317459458|gb|ADV21202.1| Exosome complex exonuclease RRP6 (Ribosomal RNA processing protein
           6), putative [Cryptococcus gattii WM276]
          Length = 851

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 3/156 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKR 75
            +    IAVD E   +       C++Q+S  +    +  +    +        +  D   
Sbjct: 168 LKQAKEIAVDLEHHDMRSYSGFTCLIQISTRENDWVVDTLSLRKEIQQDKFGDVFTDPTV 227

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L   F + V  +F T  A  +      Q  L   L+        K  
Sbjct: 228 VKVFHGADSDIVWLQRDFEIFVVNLFDTYNACVVLGM--PQRSLSALLQHYCNFEADKRY 285

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           Q +DW    L D  L YA SD   L  +       L
Sbjct: 286 QRADWRIRPLPDGMLNYARSDTHFLLFIYDNLRNAL 321


>gi|269219399|ref|ZP_06163253.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211192|gb|EEZ77532.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 411

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 74/184 (40%), Gaps = 9/184 (4%)

Query: 10  DIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNL 66
           DI    +A        A+DTE    +    R  +VQ+   G GT  I  I    +  P L
Sbjct: 24  DIDDAVSALGAGRGPFAIDTERAMGIRYSGRAYVVQIRREGAGTFLIDPIGIEDRLGP-L 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L       I H    D+  L    G     +F T++A  L      +  L+  + E+
Sbjct: 83  AELLA--TDVWILHAADQDLPCL-RELGFNPPEIFDTEVAGILLG--FERISLQAEVAEV 137

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           LG  ++K    +DWS   L+ E   YAA DV  L  LR + T  L+  GR +     C  
Sbjct: 138 LGYGLAKEHSMADWSERPLAPELRAYAALDVELLIELRERLTAMLRAAGRLEWLHEECEE 197

Query: 187 LMDR 190
           +  R
Sbjct: 198 IRLR 201


>gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio]
          Length = 899

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 61/168 (36%), Gaps = 3/168 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I   E  +            AVD E           C++Q+S  +    II     +   
Sbjct: 289 ISTLEDLVALNEKLAKTTEFAVDLEHHSYRSFLGITCLMQISTREEDF-IIDTLELRSEM 347

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L     D    K+FH    DI  L   FG+ V  +F T  A+R      N   L   L
Sbjct: 348 YILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRN--SLDHLL 405

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           K    ++  K  Q +DW    L DE L+YA +D  +L  +  +    L
Sbjct: 406 KVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYVYDRVRADL 453


>gi|308177768|ref|YP_003917174.1| ribonuclease D [Arthrobacter arilaitensis Re117]
 gi|307745231|emb|CBT76203.1| putative ribonuclease D [Arthrobacter arilaitensis Re117]
          Length = 416

 Score =  154 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 11/184 (5%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
                   +AVDTE         R  ++Q+   G GT  +        +   L    V+ 
Sbjct: 49  ALEAGTGDLAVDTERASGFRYGQRAFLLQIRREGSGTWLVDP--ETLDDLSPLRT-FVNA 105

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           +   I H    D+  L +  G+    +F T++A RL      +  L   + ELLG+ ++K
Sbjct: 106 QP-WILHAATQDLPCL-HELGMSPTALFDTELAGRLAG--FPRVSLGTMVGELLGLQLAK 161

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF---LMDR 190
              + DWS   L +  L YAA DV  L  LR   T  L+  G+ + A         L D 
Sbjct: 162 EHSAVDWSTRPLPESWLNYAALDVEVLEELRQAITATLEEQGKLEFAIQEFEHERNLPDP 221

Query: 191 AELD 194
              D
Sbjct: 222 VPAD 225


>gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299]
 gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299]
          Length = 332

 Score =  154 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 2/162 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
               + +AVD E       +   C++Q+S       +  +         L  ++ D +  
Sbjct: 51  LDKSNEMAVDLEHHSYRSFQGFTCVIQVSTRRMDFVVDALELRGLIRDALGPVMADPRVM 110

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    D+  L   FG+ V  +F T  A+R+        GL   L     +   K  Q
Sbjct: 111 KVFHGADMDVQWLQRDFGIYVVGMFDTGQAARVLE--LPSKGLAYLLDHYCSVKADKRFQ 168

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            +DW    LS+E + YA  D  HL  +  +  ++L  +GR D
Sbjct: 169 LADWRVRPLSEEMISYARGDTHHLLYVYDRLRQQLDAVGRGD 210


>gi|17531757|ref|NP_496283.1| Cell-death-Related Nuclease family member (crn-3) [Caenorhabditis
           elegans]
 gi|3874231|emb|CAA90108.1| C. elegans protein C14A4.4a, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|31747255|gb|AAP57299.1| cell death-related nuclease 3 [Caenorhabditis elegans]
          Length = 876

 Score =  154 bits (390), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 3/161 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           V   AVD E   +       C++Q+S  D    I            L     + +  K+F
Sbjct: 297 VKEFAVDLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVG-MLNEPFANPRILKVF 355

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    D+  L   +GV V  +F T +A +  +    +  L         + + K  Q +D
Sbjct: 356 HGSDSDVLWLQRDYGVHVVNLFDTYVAMKKLKY--PKFSLAYLTLRFADVVLDKQYQLAD 413

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           W A  L +  + YA  D  +L        E+L +    DLA
Sbjct: 414 WRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQDTKDLA 454


>gi|262375228|ref|ZP_06068461.1| ribonuclease D [Acinetobacter lwoffii SH145]
 gi|262309482|gb|EEY90612.1| ribonuclease D [Acinetobacter lwoffii SH145]
          Length = 380

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 10/212 (4%)

Query: 1   MTTIRVHEGDIPAECAARYVDAI-AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M     H+ D+         +++  +DTE + +     +L + Q++  +    +      
Sbjct: 1   MFQFIQHQNDLTHVLKLMDQNSVYGLDTEFIKVDTLWPKLGVFQINVDNKVYLLD--GTT 58

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHG 118
                 L  +   ++   IFH    DI ++++    + +  VF T++       +  Q  
Sbjct: 59  LDLTEFLNKIFNAQQ--NIFHACSEDIDLIYHYTQKKSLSNVFDTQVGMSFL-GHGLQVS 115

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            ++ LK++L ++I K Q  SDW A  LS EQL YAA+DV +L  L  +  + L      D
Sbjct: 116 YQNALKQMLEVDIEKDQTRSDWLARPLSSEQLLYAANDVHYLVQLSEKIKQDLDSKDLLD 175

Query: 179 LATSCCNFLMDRAELD---LLGWENVDIFSHS 207
            A   C FL      D    L +++V  + HS
Sbjct: 176 FALQDCRFLTQEIGEDTPTALLYQDVGNYRHS 207


>gi|38233981|ref|NP_939748.1| putative ribonuclease [Corynebacterium diphtheriae NCTC 13129]
 gi|38200243|emb|CAE49927.1| Putative ribonuclease [Corynebacterium diphtheriae]
          Length = 407

 Score =  153 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 9/195 (4%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            A   ++     A+DTE  G     DR  ++Q+   G GTV I   A  +     L  ++
Sbjct: 25  AAYQLSQGTGPFAIDTERAGAYRYDDRAYLLQIRREGSGTVLIDPEANRRLVTSVLGKVI 84

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            ++    I H    D+  L    G     +F T++A RL      +  L   L+E L + 
Sbjct: 85  NNQP--WIIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAG--LPRVNLASMLEERLEVT 139

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           + KA  + DWS   L    L YAA DV  L  L       L+  G+ +     C  L++ 
Sbjct: 140 LKKAHGAEDWSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGKLEWHKQECAHLINT 199

Query: 191 AELDL---LGWENVD 202
           +   L     W+++ 
Sbjct: 200 SSHGLDTQRSWQDIK 214


>gi|330813924|ref|YP_004358163.1| ribonuclease D [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487019|gb|AEA81424.1| ribonuclease D [Candidatus Pelagibacter sp. IMCC9063]
          Length = 352

 Score =  153 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 76/185 (41%), Gaps = 5/185 (2%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I     D+   C  A     + +DTE          L  + +  G     I  +   +  
Sbjct: 2   IIQSNQDLEKFCKLASRKKVLFIDTEFDRRNTYYSELSFISVYDGTKFWLIDCLTDIKVE 61

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           A  L  +L ++K  K+ H  + D+ +  +   + +  +F T+ A++    +       + 
Sbjct: 62  A--LSKVLNNKKITKVLHGSQQDLEIFKH-LQLPLNSLFDTQTAAQFC-GFEQPISYANA 117

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + ++  +++ K  Q+SDW    ++ + ++Y  +DV +L  L   F+++L++         
Sbjct: 118 VLKICKVSLDKQLQNSDWLKRPVNKKTIEYLKNDVKYLKPLYAFFSKELKKNKNFSYFKE 177

Query: 183 CCNFL 187
             + +
Sbjct: 178 EMSII 182


>gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum]
          Length = 892

 Score =  153 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 3/156 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           V   AVD E           C++Q+S  +    I        +   L     +    K+F
Sbjct: 290 VSKFAVDLEHHSYRSFLGLTCLMQISTDEKDYIIDPFPIWN-DMQILNEPFTNPNILKVF 348

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H   +D+  L   FG+ V  +F T  A  +      ++ L   ++ +  + + K  Q +D
Sbjct: 349 HGSEYDVQWLQRDFGIYVVGMFDTFCAMHVLN--FAKYSLAHLVQSICNVTLDKELQKAD 406

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           W    L+   ++YA SD  +L        ++L   G
Sbjct: 407 WRVRPLTTAHIEYARSDTHYLLYCYDTLRQRLINEG 442


>gi|294650367|ref|ZP_06727734.1| ribonuclease D [Acinetobacter haemolyticus ATCC 19194]
 gi|292823780|gb|EFF82616.1| ribonuclease D [Acinetobacter haemolyticus ATCC 19194]
          Length = 380

 Score =  153 bits (389), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 7/196 (3%)

Query: 1   MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M      + D+        +    A+DTE + +     +L + Q+   DG V ++     
Sbjct: 1   MFQFIQQQEDLAVLLHKMEHCSTYALDTEFIKVDTLYPKLGVCQI-NLDGQVALLD--GT 57

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHG 118
             +  +    + + + + IFH    DI ++++    +    +F T++A         Q  
Sbjct: 58  VLDLTHFWDKVFNAQ-QNIFHACSEDIDLIYHYADQKPLHNIFDTQVAMAFLGNGL-QVS 115

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            ++ LK  L I I K Q  SDW A  L+ +Q+ YAA+DV++L  L       LQ  G   
Sbjct: 116 YQNALKTYLDIEIEKDQTRSDWLARPLTPQQISYAANDVLYLPRLAEALKRDLQSKGIYH 175

Query: 179 LATSCCNFLMDRAELD 194
                C  L      D
Sbjct: 176 YVLEDCQNLTKEIGTD 191


>gi|310823888|ref|YP_003956246.1| ribonuclease d [Stigmatella aurantiaca DW4/3-1]
 gi|309396960|gb|ADO74419.1| ribonuclease D [Stigmatella aurantiaca DW4/3-1]
          Length = 389

 Score =  153 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 4/179 (2%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A         +AVD E   +   R RLC +Q++          +A G  +A  L  ++ D
Sbjct: 20  AARTLATAGELAVDLEADSMHAFRARLCFLQVATPTDIFLFDTLAPGV-DASLLAPLMAD 78

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +R K FH  + D+  L    G+RVR +F T  A+ L      + GL D  +E LG+ + 
Sbjct: 79  PERTKYFHAAQGDLQFL-AEAGIRVRGLFDTHRAATLLG--WPKVGLADIARERLGVELP 135

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K  Q SD+S   L  E  +Y A+DV +L  L  Q  E  +  G  +     C+ + + A
Sbjct: 136 KEHQQSDFSLRPLPPEMREYIANDVRYLCELGRQVREACRTAGILEEVLLDCDRMCEEA 194


>gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
 gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
          Length = 535

 Score =  153 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 4/170 (2%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            +   + ++       + V   AVD E       +  +C++Q+S  D    +  +A   +
Sbjct: 240 NVITEKDELKDLLETLKSVTEFAVDLEHHSYRSYQGFVCLMQISTRDADYIVDTLALRSE 299

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +  D K  KI H    DI  L   F + V  +F T  A+RL      +  L  
Sbjct: 300 LW-TLNEVFSDPKIIKILHGADSDIIWLQRDFAIYVVNMFDTGQAARLL--QFPRFSLSY 356

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            L +   +  +K  Q +DW    L  E +QYA  D  +L  +    T +L
Sbjct: 357 LLLKYCNVTANKGLQLADWRIRPLPQEMVQYAREDTHYLLYIFDVLTNEL 406


>gi|241948847|ref|XP_002417146.1| exosome complex exonuclease RRP6, putative; ribsomal RNA processing
           protein 6, putative [Candida dubliniensis CD36]
 gi|223640484|emb|CAX44736.1| exosome complex exonuclease RRP6, putative [Candida dubliniensis
           CD36]
          Length = 776

 Score =  153 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 60/161 (37%), Gaps = 3/161 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    I+     + +   L  +  D    
Sbjct: 245 LKKSTEIAVDLEHHDYRSYYGIVCLMQISSREQD-WIVDTLVLRDDLTVLNEVFADPNIV 303

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ V  +F T  ASR       +  L   L+       SK  Q
Sbjct: 304 KVFHGAFMDIIWLQRDLGLYVVSLFDTYHASRALG--FPRFSLAYLLEVYAHFKTSKQYQ 361

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            +DW    LS   L YA SD   L  +  Q   KL    + 
Sbjct: 362 LADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDANKL 402


>gi|115372643|ref|ZP_01459950.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
 gi|115370364|gb|EAU69292.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
          Length = 379

 Score =  153 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 4/179 (2%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A         +AVD E   +   R RLC +Q++          +A G  +A  L  ++ D
Sbjct: 10  AARTLATAGELAVDLEADSMHAFRARLCFLQVATPTDIFLFDTLAPGV-DASLLAPLMAD 68

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +R K FH  + D+  L    G+RVR +F T  A+ L      + GL D  +E LG+ + 
Sbjct: 69  PERTKYFHAAQGDLQFL-AEAGIRVRGLFDTHRAATLLG--WPKVGLADIARERLGVELP 125

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K  Q SD+S   L  E  +Y A+DV +L  L  Q  E  +  G  +     C+ + + A
Sbjct: 126 KEHQQSDFSLRPLPPEMREYIANDVRYLCELGRQVREACRTAGILEEVLLDCDRMCEEA 184


>gi|50954730|ref|YP_062018.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951212|gb|AAT88913.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 398

 Score =  153 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 8/178 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A     +AVD E         R  ++Q+   G GT      A G+ +  N   +  D
Sbjct: 18  EVIAAGDGPVAVDAERASGFRYSQRAYLIQVFRRGAGTFLFDPPAIGRFDELN-AAISGD 76

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
              E + H    D+  L    G+    +F T++A+RL      + GL   ++ELLGI+++
Sbjct: 77  ---EWVLHAATQDLTCL-REVGLDPVTIFDTELAARLLGM--PRVGLGTVVEELLGIHLT 130

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           K   ++DWS   L    L+YAA DV  L  LR      L    ++++A       + R
Sbjct: 131 KEHSAADWSTRPLPGPWLEYAALDVELLPDLRDAVAGLLDAADKTEIARQEFEDELTR 188


>gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 550

 Score =  153 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 3/168 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I   E           +   AVD E           C++Q+S  +    II     +   
Sbjct: 258 ITTLEELAALNEKLCQLSEFAVDLEHHSYRSFLGITCLMQISTREEDF-IIDTLELRSEM 316

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L     D    K+FH    DI  L   FG+ V  +F T  ASR       +H L   L
Sbjct: 317 YILNEAFTDPAIVKVFHGADSDIEWLQRDFGLYVVRLFDTHQASRALN--LARHSLDHLL 374

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                +   K  Q +DW    L +E +QYA +D  +L  +      +L
Sbjct: 375 THFCNVASDKRYQLADWRIRPLPEEMVQYARADTHYLLYIYDCVRAQL 422


>gi|170035413|ref|XP_001845564.1| exosome component 10 [Culex quinquefasciatus]
 gi|167877380|gb|EDS40763.1| exosome component 10 [Culex quinquefasciatus]
          Length = 796

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 3/159 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    +A+D E       +   C++Q+S       I  +A  ++    L  +  D K  
Sbjct: 277 LRQAKELAIDLEHHSYRTFQGFTCLMQISTRTKDYIIDTLAL-REELHVLNEVFTDTKVV 335

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L     + V  +F T  A+++     ++ GL+  LK    I   KA Q
Sbjct: 336 KVLHGSISDIEWLQRDLALYVVNMFDTGEAAKVLE--FSRIGLQFLLKHYCNIETDKAYQ 393

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +DW    +    ++YA  D  +L  +  +   +L   G
Sbjct: 394 LADWRIRPIPKNFIEYARKDTHYLLYIYDRMRNELIEKG 432


>gi|301119505|ref|XP_002907480.1| exosome complex exonuclease RRP6-like protein [Phytophthora
           infestans T30-4]
 gi|262105992|gb|EEY64044.1| exosome complex exonuclease RRP6-like protein [Phytophthora
           infestans T30-4]
          Length = 1465

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 3/161 (1%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
             A     IAVD E           C++Q+S       +  +A   K    L  +  D +
Sbjct: 260 LTAAEARVIAVDLEHHSYRSYMGLTCLMQISTAQEDFLVDTLALRGKLQ-TLNQVFCDPE 318

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           + K+ H    DI  L    G+ +  +F T  A+RL +    +  L   LK    I+  K 
Sbjct: 319 KVKVLHGSDMDILWLQRDLGLYIVNLFDTGRAARLLQY--PRFSLAYMLKRHCNIDADKQ 376

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            Q +DW    L    ++YA  D  +L  +  +  ++L + G
Sbjct: 377 YQLADWRTRPLDKNMVKYAREDTRYLLFIYDRLKKELLQAG 417


>gi|320534424|ref|ZP_08034906.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133371|gb|EFW25837.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 424

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 8/180 (4%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            A+  A     +AVD E            ++QL   G GT+ +  + +G      L   L
Sbjct: 43  AAQLLADGQGPVAVDAERASGFRYGQDAYLIQLRRDGIGTLLVDPVTSGP--LTELATAL 100

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                E I H    DI  L    G+R   +F T++A+RL        GL   ++E LG+ 
Sbjct: 101 DGP--EWILHAADQDIPCL-TALGLRADSLFDTELAARLLGRQH--VGLGAVIEETLGLR 155

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++K   ++DWS   L    L YAA DV  L  LR     +L+  G+   A      +  +
Sbjct: 156 LAKDHAAADWSTRPLPASWLTYAALDVELLIDLRNALATELKAAGKDQWAAQEFEHVRTK 215


>gi|51013151|gb|AAT92869.1| YOR001W [Saccharomyces cerevisiae]
          Length = 733

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    IAVD E          +C++Q+S  +    +  +   ++N   L  +  +   
Sbjct: 228 DLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTL-KLRENLHILNEVFTNPSI 286

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L    G+ V  +F T  AS+       +H L   L+       SK  
Sbjct: 287 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG--LPRHSLAYLLENFANFKTSKKY 344

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           Q +DW    LS     YA +D   L  +  Q   KL    +          +  R
Sbjct: 345 QLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKR 399


>gi|151945630|gb|EDN63871.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 gi|190407342|gb|EDV10609.1| exosome complex exonuclease RRP6 [Saccharomyces cerevisiae RM11-1a]
 gi|207341289|gb|EDZ69386.1| YOR001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256274006|gb|EEU08922.1| Rrp6p [Saccharomyces cerevisiae JAY291]
 gi|259149485|emb|CAY86289.1| Rrp6p [Saccharomyces cerevisiae EC1118]
          Length = 733

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    IAVD E          +C++Q+S  +    +  +   ++N   L  +  +   
Sbjct: 228 DLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTL-KLRENLHILNEVFTNPSI 286

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L    G+ V  +F T  AS+       +H L   L+       SK  
Sbjct: 287 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG--LPRHSLAYLLENFANFKTSKKY 344

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           Q +DW    LS     YA +D   L  +  Q   KL    +          +  R
Sbjct: 345 QLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKR 399


>gi|323335702|gb|EGA76985.1| Rrp6p [Saccharomyces cerevisiae Vin13]
          Length = 733

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    IAVD E          +C++Q+S  +    +  +   ++N   L  +  +   
Sbjct: 228 DLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTL-KLRENLHILNEVFTNPSI 286

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L    G+ V  +F T  AS+       +H L   L+       SK  
Sbjct: 287 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG--LPRHSLAYLLENFANFKTSKKY 344

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           Q +DW    LS     YA +D   L  +  Q   KL    +          +  R
Sbjct: 345 QLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKR 399


>gi|242218119|ref|XP_002474853.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725980|gb|EED79945.1| predicted protein [Postia placenta Mad-698-R]
          Length = 882

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 3/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IA+D E          +C++QLS  +    +  +A  +     L  +  D +  
Sbjct: 263 LRSAQEIAIDLEYHSYRTFGGFVCLMQLSTREEDWVVDTLAV-RDEMEALNEVFTDSQIV 321

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L   F + +  +F T  AS++      +H L   L+        K  Q
Sbjct: 322 KVLHGAESDIVWLQQDFNLYIVNLFDTYHASKVLD--FPRHSLATLLEMYCDFTADKRYQ 379

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +DW    L +E L YA SD   L  +       L
Sbjct: 380 LADWRIRPLPEEMLAYARSDTHFLLYIYDNLRNAL 414


>gi|6324574|ref|NP_014643.1| Rrp6p [Saccharomyces cerevisiae S288c]
 gi|14195186|sp|Q12149|RRP6_YEAST RecName: Full=Exosome complex exonuclease RRP6; AltName:
           Full=Ribosomal RNA-processing protein 6
 gi|1150996|gb|AAC49480.1| hypothetical protein UNC733 [Saccharomyces cerevisiae]
 gi|1420088|emb|CAA99189.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814890|tpg|DAA10783.1| TPA: Rrp6p [Saccharomyces cerevisiae S288c]
          Length = 733

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    IAVD E          +C++Q+S  +    +  +   ++N   L  +  +   
Sbjct: 228 DLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTL-KLRENLHILNEVFTNPSI 286

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L    G+ V  +F T  AS+       +H L   L+       SK  
Sbjct: 287 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG--LPRHSLAYLLENFANFKTSKKY 344

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           Q +DW    LS     YA +D   L  +  Q   KL    +          +  R
Sbjct: 345 QLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKR 399


>gi|58265702|ref|XP_570007.1| PM-scl autoantigen [Cryptococcus neoformans var. neoformans JEC21]
 gi|57226239|gb|AAW42700.1| PM-scl autoantigen, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1016

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 61/178 (34%), Gaps = 4/178 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAPNLVGMLVDEKR 75
            +    IAVD E   +       C++Q+S  +    +  +A   +        +  D   
Sbjct: 325 LKQAKEIAVDLEHHDMRSYAGFTCLIQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTI 384

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L   F + V  +F T   S        Q  L   L+        K  
Sbjct: 385 VKVFHGADSDIIWLQRDFEIFVVNLFDTY--SACVVLEMPQRSLSALLQHYCNFEADKRY 442

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQF-TEKLQRLGRSDLATSCCNFLMDRAE 192
           Q +DW    L D  L YA SD   L  +        L +  R     +C   ++D A 
Sbjct: 443 QRADWRIRPLPDGMLYYARSDTHFLLFIYDNLRNALLHKSSRPSSPANCGTIVLDSAR 500


>gi|326773241|ref|ZP_08232524.1| ribonuclease D [Actinomyces viscosus C505]
 gi|326636471|gb|EGE37374.1| ribonuclease D [Actinomyces viscosus C505]
          Length = 424

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 8/180 (4%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            A+  A     +AVD E            ++QL   G GT+ I  +  G      L   L
Sbjct: 43  AAQLLAAGRGPVAVDAERASGFRYGQDAYLIQLRRDGVGTLLIDPVTTGP--LTELATAL 100

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                E I H    DI  L    G++   +F T++A+RL        GL   ++E LG+ 
Sbjct: 101 DGP--EWILHAADQDIPCLTAR-GLKAASLFDTELAARLLGRQH--VGLGAVIEETLGLR 155

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++K   ++DWS   L    L YAA DV  L  LR     +L+  G+   A      +  +
Sbjct: 156 LAKDHAAADWSTRPLPTSWLTYAALDVELLIDLREALATELEAAGKDQWAAQEFEHVRTK 215


>gi|134109437|ref|XP_776833.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259513|gb|EAL22186.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1016

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 61/178 (34%), Gaps = 4/178 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAPNLVGMLVDEKR 75
            +    IAVD E   +       C++Q+S  +    +  +A   +        +  D   
Sbjct: 325 LKQAKEIAVDLEHHDMRSYAGFTCLIQISTRESDWVVDTLALRKEIQQDKFGDVFTDPTI 384

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L   F + V  +F T   S        Q  L   L+        K  
Sbjct: 385 VKVFHGADSDIIWLQRDFEIFVVNLFDTY--SACVVLEMPQRSLSALLQHYCNFEADKRY 442

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQF-TEKLQRLGRSDLATSCCNFLMDRAE 192
           Q +DW    L D  L YA SD   L  +        L +  R     +C   ++D A 
Sbjct: 443 QRADWRIRPLPDGMLYYARSDTHFLLFIYDNLRNALLHKSSRPSSPANCGTIVLDSAR 500


>gi|297571370|ref|YP_003697144.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
 gi|296931717|gb|ADH92525.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
          Length = 398

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 8/191 (4%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAG 59
           +  I   + +   E         AVDTE    +   +R  +VQ+   G G V +  I   
Sbjct: 18  LPEITHDDYESAVERLRNGHGPFAVDTERAMGIRYSNRAYLVQIKRAGSGIVLLDPIGIE 77

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
            +   +L  ++ D   E I H    D+  L    G+    VF T++A  +     ++  L
Sbjct: 78  DRLG-DLATIMHD---EWILHAADQDLPCL-RELGLEPSNVFDTELAGLILGY--DRVSL 130

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           +  + E LG  ++K    +DWSA  L  E   YAA DV  L  LR   T KL+  GR + 
Sbjct: 131 QSMIAEELGFVLAKEHSDADWSARPLGPELRAYAALDVDLLIELRESLTGKLKEAGRYEW 190

Query: 180 ATSCCNFLMDR 190
             S C  +  R
Sbjct: 191 FLSECEEVRRR 201


>gi|224003495|ref|XP_002291419.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973195|gb|EED91526.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 181

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 5/153 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           IA+D E          +C++QLS          I  ++        L  +L +    K+ 
Sbjct: 31  IALDLEAHSHRTFAGFVCLIQLSIHISSGYDFLIDALSLRHVIPTCLGPILANPNILKVM 90

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    DI  L   FG  V  +F T  ASR  +      GL   L++  G++  KA Q SD
Sbjct: 91  HGADSDIPWLQRDFGCYVVNLFDTGRASRALKFQ--SAGLAFLLRKYAGLDPDKAHQLSD 148

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           W    L D+   YA +D  +L  +  +   +L+
Sbjct: 149 WRRRPLPDDMRTYAVADTRYLLDIYDKLRLELK 181


>gi|307177174|gb|EFN66407.1| Exosome component 10 [Camponotus floridanus]
          Length = 1189

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 5/169 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    IAVD E       +   C++Q+S  +    I  +A  +     L  +      
Sbjct: 248 DLKNQKEIAVDLEHHSYRTFQGITCLMQISTVNTDYLIDTLAL-RSELHQLNEIFTKPTI 306

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KIFH    DI  L     + V  +F T  A++          L   L +  GIN +K  
Sbjct: 307 LKIFHGADMDILWLQRDLSLYVVNMFDTHQAAKQLN--LPYLSLAYLLNKYCGINPNKHF 364

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL--GRSDLATS 182
           Q +DW    L +E ++YA  D  +L  ++     +L     G+S++  +
Sbjct: 365 QLADWRIRPLPEELMKYAREDTHYLLHIKDMLKNELIETANGKSNILKA 413


>gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500]
          Length = 1011

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 3/159 (1%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
            V+  AVD E       +  +C++Q+S       I+     + +   L     + K  K+
Sbjct: 292 QVEEFAVDLEAHNYRSFQGFVCLMQVSTRTEDF-IVDTLVLRSHMKMLNVPFTNPKIVKV 350

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H    D+  L   FG+ +  +F T  ASR+         L   L+   G++ +K  Q +
Sbjct: 351 LHGSESDVKWLQRDFGIYIVNMFDTGQASRILEY--PSASLAFLLRFYCGVDANKKFQLA 408

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           DW    + +E ++YA  D  +L  +  +   +L   G+S
Sbjct: 409 DWRIRPVPEEMIKYAREDTHYLLYIYDRLRNELVLKGKS 447


>gi|255712831|ref|XP_002552698.1| KLTH0C11066p [Lachancea thermotolerans]
 gi|238934077|emb|CAR22260.1| KLTH0C11066p [Lachancea thermotolerans]
          Length = 735

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 57/158 (36%), Gaps = 3/158 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            + IA+D E           C++Q+S  +    I  IA        L  +  D K  K+ 
Sbjct: 234 ANEIAIDLEHHDYRTYYGITCLMQISTREKDWLIDTIALRDDLW-ILNEVFTDPKITKVL 292

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    DI  L    G+ +  +F T  ASRL    + +H L   L+       SK  Q SD
Sbjct: 293 HGAFMDIIWLQRDLGLYIVSLFDTYHASRLLG--SPKHSLAYLLERYAHFKTSKKYQLSD 350

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           W    L      YA +D   L  +       L    + 
Sbjct: 351 WRVRPLPKALKAYARADTHFLLNIYDNMRNSLIEQNKL 388


>gi|260906565|ref|ZP_05914887.1| putative ribonuclease D [Brevibacterium linens BL2]
          Length = 384

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 12/186 (6%)

Query: 10  DIPAEC------AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           D PAE        A+    IA+D E    +    R  +VQL   +    ++  +    + 
Sbjct: 13  DTPAEFSSACAELAQGSGPIAIDAERASGIRYDQRAFLVQLRRANAGTYLLD-SEVLADL 71

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L         E + H    D+  L    G++   +F T++A+R+      + GL    
Sbjct: 72  SPLNDAFA--GAEWVIHSVTQDLPCLQER-GMQPEVLFDTELAARMLG--WEKFGLAAVA 126

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +  LG+ ++K   ++DWS   L  E L YAA DV  L  +R    E L    + + A   
Sbjct: 127 ERTLGVRLAKEHSAADWSKRPLPKEWLNYAALDVEVLLPIRDILHEALIEADKWEFARQE 186

Query: 184 CNFLMD 189
              L+D
Sbjct: 187 FEHLLD 192


>gi|326775908|ref|ZP_08235173.1| 3'-5' exonuclease [Streptomyces cf. griseus XylebKG-1]
 gi|326656241|gb|EGE41087.1| 3'-5' exonuclease [Streptomyces cf. griseus XylebKG-1]
          Length = 423

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 6   VHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61
           V   D  AE  A +      +AVD E         R  +VQL   G G+  I  +  G  
Sbjct: 42  VTSDDALAEVVAAFAAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPV--GCP 99

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +   L   L     E I H    D+  L    G+    +F T++A RL      + GL  
Sbjct: 100 DLSGLGSALS--GTEWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAG--FPRVGLGA 154

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ +LG  + K   + DWS   L +  L+YAA DV  L  LR +  E+L+R G+ + A 
Sbjct: 155 MVENVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLIDLRDELEEELERQGKLEWAR 214

Query: 182 SCCN 185
              +
Sbjct: 215 EEFD 218


>gi|300858616|ref|YP_003783599.1| ribonuclease D [Corynebacterium pseudotuberculosis FRC41]
 gi|300686070|gb|ADK28992.1| Ribonuclease D [Corynebacterium pseudotuberculosis FRC41]
 gi|302206328|gb|ADL10670.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis C231]
 gi|302330885|gb|ADL21079.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis 1002]
 gi|308276570|gb|ADO26469.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis I19]
          Length = 401

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 68/177 (38%), Gaps = 6/177 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGML 70
            A      V   A+DTE        DR  ++Q+     GTV I      +    +L   +
Sbjct: 25  AARLLESGVGPFAIDTERASGFRYDDRAFLLQIRRRQAGTVLIDPSVHPEAVTQHLGKAI 84

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                  I H    D+  L    G+R   +F T++A RL      +  L    +E++G+ 
Sbjct: 85  --NSHTWIIHAAPSDLPCL-RELGLRPSNIFDTELAGRLMGM--PRVNLAAMSEEIVGLT 139

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           + K   + DWS   L  + L YAA DV  L  L     E L   G+ + A      L
Sbjct: 140 LLKGHGAEDWSRRPLPIDWLNYAALDVETLLDLADAMAELLDSQGKLEWAEQEFEHL 196


>gi|307212494|gb|EFN88225.1| Exosome component 10 [Harpegnathos saltator]
          Length = 804

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 3/159 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +  + IAVD E       +   C++Q+S  D    I  +   +     L  +      
Sbjct: 189 DLKRYNEIAVDLEHHSYRSFQGVTCLMQISTVDTDYLIDTL-ILRSELHQLNEIFTKPTI 247

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH   FDI  L     + V  +F T  A++          L   LK+   IN +K  
Sbjct: 248 LKVFHGADFDIQWLQRDLSLYVVNMFDTHQAAKQLN--FPYLSLAFLLKKYCNINPNKHF 305

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           Q +DW    L +E ++YA  D  +L  ++     +L  L
Sbjct: 306 QLADWRIRPLPEELMKYAREDTHYLLHIKDMLKNELIEL 344


>gi|50306309|ref|XP_453127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642261|emb|CAH00223.1| KLLA0D01309p [Kluyveromyces lactis]
          Length = 744

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 3/168 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D E          +C++Q+S  +    +  IA  ++    L  +  D    K+ H  
Sbjct: 235 LAIDLEHHDYRSYYGIVCLMQISDREHDWIVDTIAL-REELYILNDIFTDPNVTKVLHGA 293

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L    G+ +  +F T  ASR+      +H L   L+       SK  Q +DW  
Sbjct: 294 FMDIIWLQRDLGLYIVGLFDTYHASRMLG--FPKHSLAYLLERFANFKTSKKYQLADWRI 351

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             L+   L YA +D   L  +  +    L    +          +  R
Sbjct: 352 RPLTKPMLAYARADTHFLLNIFDKLRNSLLEQNKMSDVLHESRKVAKR 399


>gi|171910647|ref|ZP_02926117.1| ribonuclease D, putative [Verrucomicrobium spinosum DSM 4136]
          Length = 381

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 6/179 (3%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+ +      +  + +DTE   L   +++LC++QL+  +G   +I         P L  
Sbjct: 28  ADLNSLITRGELTRVYLDTEADSLHHFQEKLCLIQLAA-NGIYALIDPLVLSDLGPLLEV 86

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +   +  E  FH   +D+ +L  T       +  T++A+RLT   T   GL   +++  G
Sbjct: 87  V---DNAEVWFHSADYDLTLLKRTCNWTPTHLKDTQVAARLTGHRT--FGLAALVEQHCG 141

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           + + K+ Q  DWS   L  +   YA  DV +L  L   F   L    R       C  L
Sbjct: 142 VTLCKSSQKEDWSLRPLPAKMQAYAVDDVRYLGRLVDIFMTDLVAKDRVTWFEQSCESL 200


>gi|182435269|ref|YP_001822988.1| putative ribonuclease D [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178463785|dbj|BAG18305.1| putative ribonuclease D [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 423

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 11/184 (5%)

Query: 6   VHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQK 61
           V   D  AE  A +      +AVD E         R  +VQL   G G+  I  +  G  
Sbjct: 42  VTSDDALAEVVAAFAAGTGPVAVDAERASGYRYGQRAYLVQLRREGAGSALIDPV--GCP 99

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +   L   L     E I H    D+  L    G+    +F T++A RL      + GL  
Sbjct: 100 DLSGLGSALS--GTEWILHAATQDLPCL-RDIGMTPTSLFDTELAGRLAG--FPRVGLGA 154

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++ +LG  + K   + DWS   L +  L+YAA DV  L  LR +  E+L+R G+ + A 
Sbjct: 155 MVENVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLIDLRDELEEELERQGKLEWAR 214

Query: 182 SCCN 185
              +
Sbjct: 215 EEFD 218


>gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue [Leishmania infantum]
          Length = 743

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 5/161 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              IAVD E       +   C++Q+S  +    I+     + +   L  + ++    K+ 
Sbjct: 252 ASEIAVDLEHHDFYSYQGFTCLMQISTREEDF-IVDCLKLRSSMGALAPVFLNPSILKVL 310

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H  R DI  L   F + V   F T +A    +T    H L   +     + ++K  Q++D
Sbjct: 311 HGAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPHSLAFAVDHFCQVKLNKKYQTAD 367

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179
           W    LS E + YA  D   L  +  +     L   GR+ +
Sbjct: 368 WRVRPLSAEMVHYARQDTHFLLYVYDRLKALLLNSEGRASI 408


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 5/195 (2%)

Query: 6   VHEGDI-PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           +H  D+ P          IAVDTET GL P   +L ++QL+  D  V +I   +      
Sbjct: 7   LHPADLVPYMEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAEDLPVLVIDCFSFLPEGR 66

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDN 122
            L+  ++     KIF   +FD+  L     +    +F T +AS+L R      Q  LK  
Sbjct: 67  ELINAILSTSGIKIFQNAKFDLQFLM-ALDIFPPTLFDTMLASQLLRGSGGPVQSNLKAL 125

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            +  L  ++ K +Q+S+W   +L++ Q+ YAA D   L  LR     ++     + +A  
Sbjct: 126 AQHYLNEDLDKEEQTSNW-QGELTESQILYAARDAEILLRLRKVMIPQILENHLTQIAGI 184

Query: 183 CCNFLMDRAELDLLG 197
               +   A L+  G
Sbjct: 185 EFRCVKAMAHLEYRG 199


>gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio]
          Length = 500

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 61/168 (36%), Gaps = 3/168 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I   E  +            AVD E           C++Q+S  +    II     +   
Sbjct: 289 ISTLEDLVALNEKLAKTTEFAVDLEHHSYRSFLGITCLMQISTREEDF-IIDTLELRSEM 347

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L     D    K+FH    DI  L   FG+ V  +F T  A+R      N   L   L
Sbjct: 348 YILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHHAARCLNLGRN--SLDHLL 405

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           K    ++  K  Q +DW    L DE L+YA +D  +L  +  +    L
Sbjct: 406 KVYCDVSSDKRYQLADWRIRPLPDEMLKYAQADTHYLLYVYDRVRADL 453


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREK 77
               I +DTET GL P  +R+ ++Q++     V I+ +AA        L  +L +    K
Sbjct: 33  KARVIGIDTETTGLDPLTERIRLIQIAAPQHPVIIVDLAALADSELSPLKALL-NSSALK 91

Query: 78  IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQ-HGLKDNLKELLGINISKAQ 135
           +F  G+FD  VL    G+R   P F   +AS++ R+   + H L+    E LGI + K+ 
Sbjct: 92  VFQNGKFDWQVLEMA-GLRPSGPFFDVMLASQVLRSGLKKDHDLQSLTFEFLGIKLDKSL 150

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           QSS+++   LS  QL+YAA D   L  LR +   KL+  G  + A      +   A+++L
Sbjct: 151 QSSNFAGK-LSASQLEYAALDAAVLLKLRARLHSKLRSAGLLETAKIEFAAMPAVAQMEL 209

Query: 196 LG 197
            G
Sbjct: 210 NG 211


>gi|313837100|gb|EFS74814.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA2]
 gi|314927873|gb|EFS91704.1| 3'-5' exonuclease [Propionibacterium acnes HL044PA1]
 gi|314971873|gb|EFT15971.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA3]
 gi|328907332|gb|EGG27098.1| 3'-5' exonuclease [Propionibacterium sp. P08]
          Length = 412

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 7/179 (3%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIA-AGQKNAPNLVGMLVD 72
             +     +A+DTE         R C++QL   G GT  +  +A +G  +   L   L  
Sbjct: 30  ALSNGHGPVAIDTERAHGFRYSPRACLIQLRREGSGTHLVDPLAFSGNTDLKPLAEALAG 89

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +   I H    D+  L  +  +R   +F T++A RL      + GL   ++   G+ + 
Sbjct: 90  TQ--WILHAAIQDMPCLAMS-DLRPDDLFDTELAGRLLN--LPRVGLGPMIEHYCGVTLL 144

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           K   +SDWS   L  + L YAA DV  L  LR +    L    +   A      L++ A
Sbjct: 145 KEHSASDWSRRPLPQDCLVYAALDVELLTDLRDKTLNDLCAARKEQWARQEFAHLVEVA 203


>gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 743

 Score =  151 bits (383), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 5/161 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              IAVD E       +   C++Q+S  +    I+     + +   L  + ++    K+ 
Sbjct: 252 ASEIAVDLEHHDFYSYQGFTCLMQISTREEDF-IVDCLKLRSSMGALAPVFLNPSILKVL 310

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H  R DI  L   F + V   F T +A    +T    H L   +     + ++K  Q++D
Sbjct: 311 HGAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPHSLAFAVDHFCQVKLNKKYQTAD 367

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179
           W    LS E + YA  D   L  +  +     L   GR+ +
Sbjct: 368 WRVRPLSAEMVHYARQDTHFLLYVYDRLKALLLNSEGRASI 408


>gi|148653524|ref|YP_001280617.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1]
 gi|148572608|gb|ABQ94667.1| 3'-5' exonuclease [Psychrobacter sp. PRwf-1]
          Length = 431

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 6/172 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
                D +A+DTE +        L +VQ++ G     I      + +      +L  E  
Sbjct: 62  DLETCDRVALDTEFIKRNTYFPILALVQINTGKAIYLIDAP---KLDLTEFWVVLE-EMP 117

Query: 76  EKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             I+H    D+ + +          VF T+IA         Q G +  L + L +++ KA
Sbjct: 118 LMIWHACGEDLGIFYLLSESPALTNVFDTQIALSYLTGQL-QMGYQQALSQELDVHVEKA 176

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           +  SDW A  LS EQ  YA  DV +L  L     ++L + G +D     C  
Sbjct: 177 ESQSDWLARPLSHEQENYAIDDVRYLLNLYDILQQQLSKQGLTDKVVEDCQL 228


>gi|319948476|ref|ZP_08022610.1| 3'-5' exonuclease [Dietzia cinnamea P4]
 gi|319437843|gb|EFV92829.1| 3'-5' exonuclease [Dietzia cinnamea P4]
          Length = 412

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 5/176 (2%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           +      + IAVD E    +   +R  ++QL        ++      +    L  +L   
Sbjct: 34  DALDASSEPIAVDVERASGIRYSERAFLLQLRVPGEPALLVDPETPGRTVGPLATVLS-- 91

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           +R  +FH    D+  L    G+R   +  T++A R       +  L   + E LGI ++K
Sbjct: 92  QRPLLFHAASQDLPSL-RELGIRPTALVDTELAGRFLG--IERVNLGAMISEHLGIGLAK 148

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           A  ++DWS   L    L YAA DV+ LH L  +   +L  LGR +   + C  L+D
Sbjct: 149 AHSAADWSRRPLPAAWLDYAAYDVLFLHELADEVLPRLDALGRREWFEAECRHLVD 204


>gi|300741364|ref|ZP_07071385.1| putative ribonuclease D [Rothia dentocariosa M567]
 gi|300380549|gb|EFJ77111.1| putative ribonuclease D [Rothia dentocariosa M567]
          Length = 424

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 70/178 (39%), Gaps = 7/178 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            AE        +AVDTE    +    R  +VQL   D    I   A    +   +   L 
Sbjct: 50  AAESLRAASGPVAVDTERAQGIRYGIRAFLVQLKREDKLYLIDPEAFS--DLRIINDALA 107

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D   E I H    D   L    G+R R +F T++ +RL      +  L   ++ELLG  +
Sbjct: 108 DA--EWIIHAATQDFPSL-DLLGMRPRLLFDTELGARLAG--LERVNLGAVVEELLGYKL 162

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            K     DWS   L +  L YA  DV  L  LR    E L+  G+ + A     +L  
Sbjct: 163 EKKHSQEDWSQRPLPESWLNYACLDVDVLADLRDALEEVLEDQGKLEYARQEFAYLCS 220


>gi|255319565|ref|ZP_05360778.1| ribonuclease D, processes tRNA [Acinetobacter radioresistens SK82]
 gi|262379863|ref|ZP_06073019.1| ribonuclease D [Acinetobacter radioresistens SH164]
 gi|255303363|gb|EET82567.1| ribonuclease D, processes tRNA [Acinetobacter radioresistens SK82]
 gi|262299320|gb|EEY87233.1| ribonuclease D [Acinetobacter radioresistens SH164]
          Length = 380

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 7/191 (3%)

Query: 1   MTTIRVHEGDIPAECAARYVDAI-AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M      + D+           + A+DTE + +     +L + Q++  +    +      
Sbjct: 1   MFQFIEQQTDLEKVLYLMDQHPVYALDTEFIKVDTFWPKLGVFQINIAEQIFLLD--GTT 58

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHG 118
                    +   ++   IFH    DI ++++  G   +  VF T++          Q  
Sbjct: 59  LDLTAFWKKVYRAQQ--NIFHACSEDIDLIYHYAGPYSLSNVFDTQVGLSFL-GQGLQVS 115

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            ++ LK +L I+I K Q  SDW A  L+DEQL YAA+DV++L  L  Q   +L++    +
Sbjct: 116 YQNALKLVLDIDIEKDQTRSDWLARPLTDEQLHYAANDVLYLGQLAEQIKTELKQKNLYE 175

Query: 179 LATSCCNFLMD 189
                C  L  
Sbjct: 176 CVLEDCKHLTQ 186


>gi|296815198|ref|XP_002847936.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
           113480]
 gi|238840961|gb|EEQ30623.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
           113480]
          Length = 810

 Score =  151 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 4/180 (2%)

Query: 2   TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
            T      D+ A  A  +    IAVD E          +C++Q+S  +    +  +   +
Sbjct: 246 ATFVETMEDVHAMLAELKKAKEIAVDLEHHDAHVYHGLVCLMQISTREQDWIVDTLKPWR 305

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +  D    K+ H    D+  L    G+ +  +F T  A+ +      +  LK
Sbjct: 306 DQLQVLNEVFADPSIVKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASML--QLPKKSLK 363

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-QRLGRSDL 179
             L++ +G +  K  Q++DW    L    L YA SD   L  +  +   +L +  GR  +
Sbjct: 364 FLLQQYVGFDADKQYQTADWRIRPLLPGMLDYARSDTHFLLYIFDRLRNELIEASGRDAI 423


>gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 743

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 5/161 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              IAVD E       +   C++Q+S  +    I+     + +   L  + ++    K+F
Sbjct: 252 SSEIAVDLEHHDFYSYQGFTCLMQISTREEDF-IVDCLKLRSSMGALAPVFLNPSILKVF 310

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H  R DI  L   F + V   F T +A    +T    + L   +     + ++K  Q++D
Sbjct: 311 HGAREDIRWLQKDFSLYVVNFFDTGVA---LQTLHMPYSLAFAVDHFCQVKLNKKYQTAD 367

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179
           W    LS E + YA  D   L  +  +     L   GR+ +
Sbjct: 368 WRVRPLSAEMVHYARQDTHFLLYVHDRLKALLLNSEGRASI 408


>gi|289641274|ref|ZP_06473440.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
 gi|289508872|gb|EFD29805.1| 3'-5' exonuclease [Frankia symbiont of Datisca glomerata]
          Length = 474

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 8/167 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
            +A D E         R  +VQ+   G GT  +  +A    +   +   + D   E + H
Sbjct: 56  PVAFDAERASGYRYSQRAYLVQIRRRGSGTHLLDPVALA--DLTCVQDAVGDA--EWVLH 111

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L    G+R   +F T++A RL      + GL   ++++LG  + K   ++DW
Sbjct: 112 AANQDLPCL-AEVGLRPSRLFDTELAGRLLGY--ERVGLGIMVEKVLGFTLEKGHSAADW 168

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           S   L +  L+YAA DV  L  LR     +L+  G+   A      +
Sbjct: 169 STRPLPEPWLRYAALDVELLVELRDALETELETQGKLAFAREEFAAI 215


>gi|326560439|gb|EGE10821.1| ribonuclease D [Moraxella catarrhalis 7169]
 gi|326565826|gb|EGE15988.1| ribonuclease D [Moraxella catarrhalis BC1]
 gi|326570481|gb|EGE20521.1| ribonuclease D [Moraxella catarrhalis BC8]
          Length = 407

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 1   MTTIRVHEGD----IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           + TI V   D    +  E  A   D +A+DTE +        L ++Q++ G+    I   
Sbjct: 21  LPTIWVQNDDDLYALIDEIDA--SDVVALDTEFIKRTTYYPILALIQINTGNAIYLIDAP 78

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTN 115
              + +       L +     +++    D+ + +          +F  +I          
Sbjct: 79  ---KLDLTEFWQALAEVPIM-VWYACGEDLGIFYLLAKCPPLTNIFDVQIGVAYLSGKL- 133

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G    L E+LGI I K +  S+W A  LS EQ  YAA+DV +L  L      +L   G
Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEVVRTELAARG 193

Query: 176 RSDLATSCCNF 186
             +      N 
Sbjct: 194 ILNCVLEDSNH 204


>gi|145295805|ref|YP_001138626.1| hypothetical protein cgR_1730 [Corynebacterium glutamicum R]
 gi|140845725|dbj|BAF54724.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 403

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 6/179 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70
            A+  A      A+DTE        DR  ++Q+   G GT+         +    L  +L
Sbjct: 25  AADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVL 84

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
               +E I H    D+  L     +    +F T++A RL     +   L   ++++  ++
Sbjct: 85  --NGQEWIIHAASTDLPSL-AWLDLHPGLLFDTELAGRLAG--FDHVNLAAMVEQIFDLH 139

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           + K   S DWS   L +  L YAA DV  L  L     E L + G+   A      ++D
Sbjct: 140 LLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFVHIVD 198


>gi|25028351|ref|NP_738405.1| hypothetical protein CE1795 [Corynebacterium efficiens YS-314]
 gi|23493636|dbj|BAC18605.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 413

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 6/179 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70
            A+  A      A+DTE        DR  ++Q+   G GT+     +   + + +L  +L
Sbjct: 31  AADVLAGGSGPFAIDTERASGFRYDDRAFLIQIRRRGAGTLLFDPESHRPELSRSLGPVL 90

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
               +E I H    D+  L     +    +F T++A RL         L   ++++  ++
Sbjct: 91  --NGQEWIIHAAATDLPSL-AWLDLHPGTLFDTELAGRLAG--FELVNLAAMVEQIFDLH 145

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           + K   + DWS   L +E L YAA DV  L  L     E L   G+ D A      +  
Sbjct: 146 LLKGHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWAEQEFEHIRT 204


>gi|21324671|dbj|BAB99294.1| Ribonuclease D [Corynebacterium glutamicum ATCC 13032]
          Length = 421

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 6/179 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70
            A+  A      A+DTE        DR  ++Q+   G GT+         +    L  +L
Sbjct: 43  AADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVL 102

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
               +E I H    D+  L     +    +F T++A RL     +   L   ++++  ++
Sbjct: 103 --NGQEWIIHAASTDLPSL-AWLDLHPGLLFDTELAGRLAG--FDHVNLAAMVEQIFDLH 157

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           + K   S DWS   L +  L YAA DV  L  L     E L + G+   A      ++D
Sbjct: 158 LLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFVHIVD 216


>gi|149375206|ref|ZP_01892978.1| ribonuclease D [Marinobacter algicola DG893]
 gi|149360570|gb|EDM49022.1| ribonuclease D [Marinobacter algicola DG893]
          Length = 382

 Score =  150 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 7/194 (3%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+    A    + +A+DTE   +        +VQL  G     +    +  + +     
Sbjct: 24  DDLDRWLAEGQGEPLALDTEFERVNTFFPIPGLVQLGLGQRFCLVDP--SVAEASEGFRN 81

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
            L D    K+ +    D+ +  +   +    V   +I + L        G    ++ L G
Sbjct: 82  ALTDPGTPKLLYAMSEDLELFRHWLQLEPEGVVDLQIGAALAGAGF-SVGYARLVETLFG 140

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            ++ K+   SDW +  LS  Q +YA  DV  L  L      +LQ+ G             
Sbjct: 141 ESLDKSATRSDWVSRPLSAAQERYALDDVRFLVPLYHWVITRLQKRGLEAALADES---- 196

Query: 189 DRAELDLLGWENVD 202
            R   +L   +N D
Sbjct: 197 TRFSKELAAQDNPD 210


>gi|257454439|ref|ZP_05619701.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60]
 gi|257448205|gb|EEV23186.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60]
          Length = 403

 Score =  150 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 8/184 (4%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           ++  +           VD IA+DTE +        L ++Q++ G     I          
Sbjct: 23  VKTQDALFALLDDLEQVDTIALDTEFIKRDTFFPILALIQINTGKAIYLIDAPKLY---L 79

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV--RPVFCTKIASRLTRTYTNQHGLKD 121
                +L D     + H    D+ + +Y        R VF T+I      T  N  G + 
Sbjct: 80  EEFWEVLAD-IPTVVLHACGEDLGI-YYLLSNLPALRNVFDTQIGLGFL-TGENSLGYQK 136

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           +L+E + +++ K +  SDW    L+ EQ  YA  DV +L  + +    +L   G    A 
Sbjct: 137 SLQETIAVHVDKGESQSDWLQRPLTPEQESYAVDDVRYLLPMFVAIKTQLIEQGLWQYAV 196

Query: 182 SCCN 185
             C 
Sbjct: 197 EDCQ 200


>gi|19553105|ref|NP_601107.1| ribonuclease D [Corynebacterium glutamicum ATCC 13032]
 gi|62390740|ref|YP_226142.1| ribonuclease D protein [Corynebacterium glutamicum ATCC 13032]
 gi|41326078|emb|CAF20241.1| PROBABLE RIBONUCLEASE D PROTEIN [Corynebacterium glutamicum ATCC
           13032]
          Length = 403

 Score =  150 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 6/179 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70
            A+  A      A+DTE        DR  ++Q+   G GT+         +    L  +L
Sbjct: 25  AADLLASGTGPFAIDTERASGFRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVL 84

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
               +E I H    D+  L     +    +F T++A RL     +   L   ++++  ++
Sbjct: 85  --NGQEWIIHAASTDLPSL-AWLDLHPGLLFDTELAGRLAG--FDHVNLAAMVEQIFDLH 139

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           + K   S DWS   L +  L YAA DV  L  L     E L + G+   A      ++D
Sbjct: 140 LLKGHGSEDWSKRPLPESWLNYAALDVEMLLELADVMAEILDQQGKLPWAEQEFVHIVD 198


>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
 gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
          Length = 1613

 Score =  150 bits (381), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 9/181 (4%)

Query: 24   AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR----IAAGQKNAPNLVGMLVDEKREKIF 79
             +D ET GL  R DR+ ++Q+S  D    +I          K    LV +L  +   K+ 
Sbjct: 1060 TLDIETTGLNHREDRIRLLQISTPDQPSVVIDVFKVPVPTLKECTWLVKLLGSQAV-KVL 1118

Query: 80   HYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHG--LKDNLKELLGINISKAQQ 136
            H G+FDI  L +  G  V+ P+F T IA++L           L    +  L I + K+QQ
Sbjct: 1119 HNGKFDINFLSHN-GFNVKGPIFDTMIAAKLLSATRFNWSCKLGHVAERYLNIVLDKSQQ 1177

Query: 137  SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL 196
             SDW+ D L +EQ+ YA+ D   L  L     EKL+      +A      ++   +++  
Sbjct: 1178 FSDWTLDPLFEEQVIYASRDTAVLLPLYFILQEKLKAERLDMIADIENKCVLAVCQMEQN 1237

Query: 197  G 197
            G
Sbjct: 1238 G 1238


>gi|227488764|ref|ZP_03919080.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542239|ref|ZP_03972288.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091186|gb|EEI26498.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227182068|gb|EEI63040.1| ribonuclease D [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 386

 Score =  150 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 72/180 (40%), Gaps = 8/180 (4%)

Query: 13  AECAARYVD--AIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGM 69
           A+CAA       IA+DTE        DR  ++QL   G GT  I   A      P L   
Sbjct: 21  ADCAATLSPGAPIAIDTERASGYTYDDRAYLIQLRQEGIGTFLIDAEALRDDLPPVLAP- 79

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
                   + H    DI  L    G+    +F T++A R      ++  L      +LGI
Sbjct: 80  -AVNACPWVLHAAVSDIPCL-ADVGMTAPTLFDTEVAGRFLG--FDKVNLAAMTNRILGI 135

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           ++ K   + +WS   +    L YAA DV  L  L    T  L+R G+   A +    ++D
Sbjct: 136 DLKKGHAAENWSKRPIPRSWLIYAALDVELLIELADTLTALLEREGKLAWAEAEFQHIID 195


>gi|259507406|ref|ZP_05750306.1| ribonuclease D [Corynebacterium efficiens YS-314]
 gi|259165031|gb|EEW49585.1| ribonuclease D [Corynebacterium efficiens YS-314]
          Length = 407

 Score =  150 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 6/179 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGML 70
            A+  A      A+DTE        DR  ++Q+   G GT+     +   + + +L  +L
Sbjct: 25  AADVLAGGSGPFAIDTERASGFRYDDRAFLIQIRRRGAGTLLFDPESHRPELSRSLGPVL 84

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
               +E I H    D+  L     +    +F T++A RL         L   ++++  ++
Sbjct: 85  --NGQEWIIHAAATDLPSL-AWLDLHPGTLFDTELAGRLAG--FELVNLAAMVEQIFDLH 139

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           + K   + DWS   L +E L YAA DV  L  L     E L   G+ D A      +  
Sbjct: 140 LLKGHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWAEQEFEHIRT 198


>gi|326561643|gb|EGE11980.1| ribonuclease D [Moraxella catarrhalis 103P14B1]
 gi|326562606|gb|EGE12917.1| ribonuclease D [Moraxella catarrhalis 46P47B1]
 gi|326571165|gb|EGE21189.1| ribonuclease D [Moraxella catarrhalis BC7]
 gi|326573455|gb|EGE23423.1| ribonuclease D [Moraxella catarrhalis 101P30B1]
 gi|326577111|gb|EGE27005.1| ribonuclease D [Moraxella catarrhalis O35E]
          Length = 407

 Score =  150 bits (380), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 1   MTTIRVHEGD----IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           + TI V   D    +  E  A   D +A+DTE +        L ++Q++ G+    I   
Sbjct: 21  LPTIWVQNDDDLYALIDEIDA--SDVVALDTEFIKRTTYYPILALIQINTGNAIYLIDAP 78

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTN 115
              + +       L  E    +++    D+ + +          +F  +I          
Sbjct: 79  ---KLDLTEFWQALA-EVPTMVWYACGEDLGIFYLLAKCPPLTNIFDVQIGVAYLSGKL- 133

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G    L E+LGI I K +  S+W A  LS EQ  YAA+DV +L  L      +L   G
Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEVVRTELAARG 193

Query: 176 RSDLATSCCNF 186
             +      N 
Sbjct: 194 ILNCVLEDSNH 204


>gi|68490644|ref|XP_710869.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
 gi|46432124|gb|EAK91626.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
          Length = 786

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 3/161 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    I  +A  + +   L  +  D    
Sbjct: 248 LKKSTEIAVDLEHHDYRSYYGIVCLMQISNREQDWIIDTLAL-RDDLTVLNEVFADPDIV 306

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ V  +F T  ASR       +  L   L+       SK  Q
Sbjct: 307 KVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRALG--FPRFSLAYLLEVYAHFKTSKQYQ 364

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            +DW    LS   L YA SD   L  +  Q   KL    + 
Sbjct: 365 LADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKL 405


>gi|254579989|ref|XP_002495980.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
 gi|238938871|emb|CAR27047.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
          Length = 741

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 3/176 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    IAVD E          +C++Q+S       +  +A  + +   L  +  +   
Sbjct: 227 DLKKSTEIAVDLEHHDYRSYYGIVCLMQVSTRQTDYLVDTLAL-RDDLVVLNEVFANPLI 285

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L    G+ +  +F T  ASR       +H L   L+       SK  
Sbjct: 286 VKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASRALG--FPRHSLAYLLETFASFKTSKKY 343

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           Q +DW    LS     YA +D   L  +  Q   KL    +     +    +  R+
Sbjct: 344 QLADWRVRPLSKAMSAYARADTHFLLNIYDQLRNKLIIENKLAGVLAESRNVAKRS 399


>gi|296113063|ref|YP_003627001.1| ribonuclease D [Moraxella catarrhalis RH4]
 gi|295920757|gb|ADG61108.1| ribonuclease D [Moraxella catarrhalis RH4]
 gi|326563584|gb|EGE13838.1| ribonuclease D [Moraxella catarrhalis 12P80B1]
          Length = 407

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 1   MTTIRVHEGD----IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           + TI V   D    +  E  A   D +A+DTE +        L ++Q++ G+    I   
Sbjct: 21  LPTIWVQNDDDLYALIDEIDA--SDVVALDTEFIKRTTYYPILALIQINTGNAIYLIDAP 78

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTN 115
              + +       L  E    +++    D+ + +          +F  +I          
Sbjct: 79  ---KLDLTEFWQALA-EVPTMVWYACGEDLGIFYLLAKCPPLTNIFDVQIGVAYLSGKL- 133

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G    L E+LGI I K +  S+W A  LS EQ  YAA+DV +L  L      +L   G
Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEVVRTELAARG 193

Query: 176 RSDLATSCCNF 186
             +      N 
Sbjct: 194 ILNCVLEDSNH 204


>gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
 gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
          Length = 582

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 6/177 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +D E  GL P   R+ ++QL+ G  T  +       K+   L   L      K+ H  
Sbjct: 30  VGLDIEATGLSPLDARMRLLQLAAGGETFVVDVFEV--KDLSPLREALE-GGPLKVLHNA 86

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--TNQHGLKDNLKELLGINISKAQQSSDW 140
           ++D + L    G+R+ P+F T +A++L         + L+      L   + K  +  DW
Sbjct: 87  KYDYSFLLAQHGIRLSPLFDTMLAAQLLDGGEQGPSYSLEAVAGRYLQETVDKTARREDW 146

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           S  +LS EQL+YAA D   L  L  +  E L+R G   ++      +   AE++L G
Sbjct: 147 SK-ELSREQLEYAARDAAILLPLHERLQELLEREGLGPVSRIEFGAVPAIAEMELAG 202


>gi|108760811|ref|YP_634116.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
 gi|108464691|gb|ABF89876.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
          Length = 389

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 7/182 (3%)

Query: 13  AECAARYVDA---IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
            E A R ++A   IAVD E   +   R RLC +QL+  D    +  +  G      L  +
Sbjct: 17  EESATRTLEAAREIAVDLEADSMHAFRARLCFLQLATDDQVFLLDTLQPGVVPG-MLAPL 75

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           + D  R K FH  + D+  L    GVRV+ +F T  A+ L      + GL D  +E LG+
Sbjct: 76  MADPARTKFFHAAQGDLQFL-AEVGVRVQGLFDTHRAATLLG--WPKVGLADLARERLGV 132

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            + K  Q SD+S   L     +Y A+DV +L  L  Q  +  +     +     C  L D
Sbjct: 133 ELPKEHQQSDFSIRPLPPGMREYIANDVRYLCELGRQVRDACREADILEEVLLDCVRLCD 192

Query: 190 RA 191
            A
Sbjct: 193 EA 194


>gi|326575647|gb|EGE25570.1| ribonuclease D [Moraxella catarrhalis CO72]
          Length = 407

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 1   MTTIRVHEGD----IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           + TI V   D    +  E  A   D +A+DTE +        L ++Q++ G+    I   
Sbjct: 21  LPTIWVQNDDDLYALIDEIDA--SDVVALDTEFIKRTTYYPILALIQINTGNAIYLIDAP 78

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTN 115
              + +       L  E    +++    D+ + +          +F  +I          
Sbjct: 79  ---KLDLTEFWQALA-EVPTMVWYACGEDLGIFYLLAKCPPLTNIFDVQIGVAYLSGKL- 133

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q G    L E+LGI I K +  S+W A  LS EQ  YAA+DV +L  L      +L   G
Sbjct: 134 QAGYSQALNEMLGIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEVVRTELAARG 193

Query: 176 RSDLATSCCNF 186
             +      N 
Sbjct: 194 ILNCVLEDSNH 204


>gi|238879034|gb|EEQ42672.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 786

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 3/161 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    I  +A  + +   L  +  D    
Sbjct: 248 LKKSTEIAVDLEHHDYRSYYGIVCLMQISNREQDWIIDTLAL-RDDLTVLNEVFADPDIV 306

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ V  +F T  ASR       +  L   L+       SK  Q
Sbjct: 307 KVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRALG--FPRFSLAYLLEVYAHFKTSKQYQ 364

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            +DW    LS   L YA SD   L  +  Q   KL    + 
Sbjct: 365 LADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKL 405


>gi|50286743|ref|XP_445801.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525107|emb|CAG58720.1| unnamed protein product [Candida glabrata]
          Length = 737

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 3/174 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S       +  IA  + +   L  +  +    
Sbjct: 229 LKKSSEIAVDLEHHDFRSYYGLVCLMQISTRTQDYIVDTIAL-RDDLKMLNEVFTNPLIT 287

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ +  +F T  AS+       +H L   L++      SK  Q
Sbjct: 288 KVFHGAFMDIIWLQRDLGLYIVSLFDTFHASKALG--LPKHSLAYLLEKYANFKTSKKYQ 345

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            +DW    LS   + YA +D   L  +  Q    L   G+          +  R
Sbjct: 346 LADWRRRPLSKAMMAYARADTHFLLNIFDQMRNGLISSGKLAGVLRESRNVALR 399


>gi|242011128|ref|XP_002426307.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510384|gb|EEB13569.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 737

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 55/158 (34%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
                 IA+D E       +   C++Q+S  D    I  IA   K    L  +  +    
Sbjct: 266 LEKCKEIAIDLEHHSYRSFQGFTCLLQISTRDTDYVIDTIALRSK-LEGLNKIFTNPNIV 324

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L     + V  +F T  A +L     +   L   +     I   K  Q
Sbjct: 325 KVFHGADLDILWLQRDLSLYVVNMFDTHQAGKLLNY--SSLSLAYLMFHFCKIVAQKHFQ 382

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    L DE L YA  D  +L  +       L   
Sbjct: 383 MADWRIRPLPDELLAYAREDTHYLLYIYDNLRNILIEK 420


>gi|115396098|ref|XP_001213688.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193257|gb|EAU34957.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 761

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +      + ++Q+S  +    +  +   ++    L  +  D    
Sbjct: 241 LKAAKEIAIDLEHHDVHSYHGLVSLMQISTREKDWVVDTLKPWREELQMLNEVFTDPSIL 300

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ +  +F T  A+        +  LK  L++ +     K  Q
Sbjct: 301 KVLHGSSMDIIWLQRDLGLYIVGMFDTYHAA--CALNYPKRSLKYLLQKFVNFEADKRYQ 358

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    L      YA SD  +L  +      +L R
Sbjct: 359 MADWRIRPLPSGMFDYARSDTHYLLHIYDHLRNELIR 395


>gi|68490669|ref|XP_710857.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
 gi|46432110|gb|EAK91613.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
          Length = 785

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 3/161 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    I  +A  + +   L  +  D    
Sbjct: 248 LKKSTEIAVDLEHHDYRSYYGIVCLMQISNREQDWIIDTLAL-RDDLTVLNEVFADPDIV 306

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ V  +F T  ASR       +  L   L+       SK  Q
Sbjct: 307 KVFHGAFMDIIWLQRDLGLYVVSLFDTFHASRALG--FPRFSLAYLLEVYAHFKTSKQYQ 364

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            +DW    LS   L YA SD   L  +  Q   KL    + 
Sbjct: 365 LADWRIRPLSPPMLAYARSDTHFLLFIYDQLKNKLIDAEKL 405


>gi|195108841|ref|XP_001999001.1| GI24274 [Drosophila mojavensis]
 gi|193915595|gb|EDW14462.1| GI24274 [Drosophila mojavensis]
          Length = 901

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 3/159 (1%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A    R    IA+D E           C+VQ+S       I      ++    L  +L D
Sbjct: 289 ALTELRKASQIAIDVEHHSYRTFMGITCLVQMSTRTKD-YIFDTLKLREEMHILNLVLTD 347

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            K  KI H    DI  L     + +  +F T  A++       +  L   LK  L +++ 
Sbjct: 348 PKVLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAFLLKHYLDLDVD 405

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           K+ Q +DW    L  + + YA  D  +L  +  + T  L
Sbjct: 406 KSLQLADWRMRPLPQKLIDYARQDTHYLIYIYERLTNDL 444


>gi|289620962|emb|CBI52696.1| unnamed protein product [Sordaria macrospora]
          Length = 821

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 2/170 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I  +EG +      +    IA+D E          L ++Q+S  +    I  +   +   
Sbjct: 231 IDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDTLQPWRHKL 290

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  D K  K+ H    D   L    G+ +  +F T  A  +        G    L
Sbjct: 291 EVLNEVFADPKIVKVLHGAFMDAIWLQRDLGLYLVGLFDTYHACAVLGYPGRSLGY--LL 348

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +       K  Q +DW    L +E   YA SD  +L  +      +L  
Sbjct: 349 SKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIYDMLVNELIE 398


>gi|329945641|ref|ZP_08293374.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528644|gb|EGF55609.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 372

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 7/168 (4%)

Query: 24  AVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           AVD E            +VQL   G GT+ I  +  G      L  +L     E I H  
Sbjct: 2   AVDAERASGFRYGQDAYLVQLRRDGVGTLLIDPVTCG-PLTTELAAVLDGP--EWILHAA 58

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L    G+R   +F T++A+RL        GL   ++E LG+ ++K   ++DWS 
Sbjct: 59  DQDIPCL-TALGLRSASLFDTELAARLLGRQH--VGLGAVIEETLGLRLAKDHAAADWST 115

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
             L    L YAA DV  L  LR     +L+  G+S  A      +  R
Sbjct: 116 RPLPASWLIYAALDVELLIDLRDALAAELETDGKSQWAAQEFEHVRTR 163


>gi|213964497|ref|ZP_03392697.1| ribonuclease D [Corynebacterium amycolatum SK46]
 gi|213952690|gb|EEB64072.1| ribonuclease D [Corynebacterium amycolatum SK46]
          Length = 433

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 70/186 (37%), Gaps = 13/186 (6%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVD 72
           E  A+    +AVDTE        DR  ++Q    G GT  I       ++    + +   
Sbjct: 36  EQLAKGHGWLAVDTERASAYRYDDRAFLLQFRRRGAGTFLIDP-----EDGRKAMAVFGS 90

Query: 73  --EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                  I H    D+  L    G+    V  T++A RL      +  L    + LLG+ 
Sbjct: 91  SVNNLTWIIHAAHSDLPCL-AALGLYPTKVIDTELAGRLLG--LERVNLAALTERLLGVG 147

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC--NFLM 188
           ++K     DWS   L  + L YAA DV  L  L     + L  L R +     C     +
Sbjct: 148 LAKGHGREDWSTRPLPADWLDYAALDVELLIELAEVLCQALTELDRLEWLEQECERELAI 207

Query: 189 DRAELD 194
           +R  LD
Sbjct: 208 NRKYLD 213


>gi|195390616|ref|XP_002053964.1| GJ23053 [Drosophila virilis]
 gi|194152050|gb|EDW67484.1| GJ23053 [Drosophila virilis]
          Length = 904

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IA+D E           C+VQ+S       I      +++   L  +L D K  
Sbjct: 290 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRTKD-YIFDTLTLREDMHILNLVLTDPKVL 348

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H G  DI  L     + +  +F T  A++       +  L   LK  L +++ K+ Q
Sbjct: 349 KILHGGDLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAFLLKHYLDLDVDKSLQ 406

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    L  + + YA  D  +L  +  + T  L + 
Sbjct: 407 LADWRMRPLPQKLIDYARQDTHYLIYVYERLTNDLLQA 444


>gi|150951537|ref|XP_001387875.2| ribosomal RNA processing 3'-5' exonuclease [Scheffersomyces
           stipitis CBS 6054]
 gi|149388676|gb|EAZ63852.2| ribosomal RNA processing 3'-5' exonuclease [Pichia stipitis CBS
           6054]
          Length = 792

 Score =  149 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 62/159 (38%), Gaps = 3/159 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  D    I  +A  + +   L  +  +    
Sbjct: 249 LKKSSEIAVDLEHHDYRSYYGIVCLMQISNRDQDWIIDTLAL-RDDLECLNTVFTNPHIV 307

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ +  +F T  AS+       +  L   L+       SK  Q
Sbjct: 308 KVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKSLG--FPKFSLAYLLETFAHFKTSKKYQ 365

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +DW    LS   + YA SD   L ++  Q   KL   G
Sbjct: 366 LADWRIRPLSPPMMAYARSDTHFLLSIFDQLKNKLIDAG 404


>gi|332971116|gb|EGK10083.1| ribonuclease D [Psychrobacter sp. 1501(2011)]
          Length = 437

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 6/172 (3%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
                D +A+DTE +        L +VQ++ G+    I      + +      +L  E  
Sbjct: 65  DLETRDRVALDTEFIKRSTYFPILALVQINTGECIYLIDAP---KLDLTEFWVVLE-EMP 120

Query: 76  EKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             I+H    D+ + +          VF T+IA         Q G +  L + L +++ K 
Sbjct: 121 LMIWHACGEDLGIFYLLSESPALTNVFDTQIALSYLTGQL-QMGYQQALSQELDVHVDKG 179

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           +  SDW A  L+ EQ  YA  DV +L  L     ++L +    D     C  
Sbjct: 180 ESQSDWLARPLTHEQESYAIDDVRYLLNLYDILQQQLTKQSLLDKVIEDCQL 231


>gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 515

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 3/142 (2%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    IAVD E       +  +C++Q+S       +  +A      P+L  +  D   +K
Sbjct: 239 RLAGEIAVDLENHNYRSFQGFVCLMQVSTRSEDFIVDALALRSHMGPSLKDLFADANVKK 298

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           + H    DI  L   FG+ V  +F T + A+R+        GL   ++  L IN  K  Q
Sbjct: 299 VMHGADRDIEWLQRDFGIYVCNMFDTGQQAARVL--QLEGFGLAFLMQRFLKINPDKRYQ 356

Query: 137 SSDWSADDLSDEQLQYAASDVV 158
            +DW    L  E ++YA  D  
Sbjct: 357 LADWRIRPLPAEMIKYAREDTH 378


>gi|258546025|ref|ZP_05706259.1| ribonuclease D [Cardiobacterium hominis ATCC 15826]
 gi|258518754|gb|EEV87613.1| ribonuclease D [Cardiobacterium hominis ATCC 15826]
          Length = 401

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 59/173 (34%), Gaps = 5/173 (2%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85
           D+E +       +L +VQ     GT  +     G         +L       + H    D
Sbjct: 73  DSEFVRERSYIPKLALVQTCQPGGTAQLYDPLEGDI---PWAPILHHPAPL-VMHAAAQD 128

Query: 86  IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDL 145
           + ++          +  T+    L   +         ++  LGI   K+Q  SDW A  L
Sbjct: 129 LELMQLCGDALPATIRDTQTGFALCSPHL-AVSYAALVEHYLGIAPDKSQTRSDWLARPL 187

Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGW 198
           +  QL YAA DV  L  L       LQRLGR           + R +     W
Sbjct: 188 NAAQLDYAADDVGLLARLYPLLVADLQRLGRLAWWAEESATQLARQQQTRDAW 240


>gi|71024099|ref|XP_762279.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
 gi|46101781|gb|EAK87014.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
          Length = 1027

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 3/177 (1%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLV 67
             +        V+ IA+D E       +  +C++QLS   G   I  ++   + +A  L 
Sbjct: 349 EQLRDHLDEPRVNEIAIDLEHHSYRTYQGIVCLMQLSTRWGDWIIDTLSDDVRQHAELLN 408

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
               +  + K+ H    D+  L    G+ +  +F T  A+ +       HGL   +    
Sbjct: 409 SSFTNPDKVKVLHGANHDVLWLQRDLGLYLVNLFDTYHATNVLM--FPSHGLNYLMARYC 466

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
             +  K  Q +DW    L  E L YA SD   L  +      +L   G  D      
Sbjct: 467 NFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLFIYDNLRHELMEAGGIDAIRQVF 523


>gi|311113446|ref|YP_003984668.1| ribonuclease D [Rothia dentocariosa ATCC 17931]
 gi|310944940|gb|ADP41234.1| ribonuclease D [Rothia dentocariosa ATCC 17931]
          Length = 424

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 70/178 (39%), Gaps = 7/178 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            AE        +AVDTE    +    R  +VQL   D    I   A    +   +   L 
Sbjct: 50  AAESLRAASGPVAVDTERAQGIQYGIRAFLVQLKREDKLYLIDPEAFS--DLRIINDALA 107

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D   E I H    D   L    G+R R +F T++ +RL      +  L   ++ELLG  +
Sbjct: 108 DA--EWIIHAATQDFPSL-DLLGMRPRLLFDTELGARLAG--LERVNLGAVVEELLGYKL 162

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            K     DWS   L +  L YA  DV  L  LR    E L+  G+ + A     +L  
Sbjct: 163 EKKHSQEDWSQRPLPESWLNYACLDVDVLADLRDALEEVLEDQGKLEYARQEFAYLCS 220


>gi|330802281|ref|XP_003289147.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
 gi|325080770|gb|EGC34311.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
          Length = 1045

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 4/168 (2%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            +   C    +V+  A+D E       +  +C++Q+S       I  +A  + +   L  
Sbjct: 259 QLEELCDKLSHVEEFAMDLEHHNYRSYQGFVCLMQISTRGEDFIIDTLAL-RSHIHMLNN 317

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  +    K+ H    DI  L   FG+ +  +F T  ASR+         L   LK    
Sbjct: 318 VTTNPAIVKVLHGSDSDIKWLQRDFGIYIVNMFDTGQASRVLEY--PSASLAFLLKYFCA 375

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           ++ +K  Q +DW    + +E ++YA  D  +L  +  +   +L   G+
Sbjct: 376 VDANKKYQLADWRIRKIPEEMIKYAREDTHYLLYIYDRLRNELINKGK 423


>gi|189237006|ref|XP_966807.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
          Length = 947

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 5/170 (2%)

Query: 4   IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           I + + +   E     R+    +VD E           C++Q+S  D    I  +A  + 
Sbjct: 257 IEIDKAEQLDELVETLRHCKEFSVDVEHHSYRSFMGITCLIQISTEDKDYLIDALAL-RD 315

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +       KIFH    DI  L     + V  +F T  A++  +       L  
Sbjct: 316 KLSILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMFDTHQAAKALQY--PALSLAF 373

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +K+   +  +K  Q +DW    L DE   YA  D  +L  +      +L
Sbjct: 374 LMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYIYKMMKREL 423


>gi|322799595|gb|EFZ20873.1| hypothetical protein SINV_12011 [Solenopsis invicta]
          Length = 813

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 11/183 (6%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T I+    D+      R    IAVD E       +   C++Q+S       I  +   + 
Sbjct: 269 TDIQTLLEDL------RNHKEIAVDLEHHSYRTFQGITCLMQISTITTDYLIDTLTL-RS 321

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +       K+FH    DI  L     + V  +F T  A+R          L  
Sbjct: 322 ELHRLNEIFTKPSILKVFHGADMDILWLQRDLSLYVVNMFDTHQAARQLN--LPYLSLAH 379

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDL 179
            +K+   I+++K  Q +DW    L  E  +YA  D  +L  ++     +L     G+S++
Sbjct: 380 LIKKYCDIDLNKQFQLADWRIRPLPLELTRYAREDTRYLLYIKDMLNNELIDAANGKSNI 439

Query: 180 ATS 182
             +
Sbjct: 440 LKA 442


>gi|157876102|ref|XP_001686412.1| exosome subunit rrp6p homologue [Leishmania major strain Friedlin]
 gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain
           Friedlin]
          Length = 742

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           IAVD E       +   C++Q+S  +    I+     + +   L  + ++    K+ H  
Sbjct: 254 IAVDLEHHDFYSYQGFTCLMQISTREEDF-IVDCLKLRSSMGALAPVFLNPSILKVLHGA 312

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI  L   F + V  +F T +A    +T    + L   +     + ++K  Q++DW  
Sbjct: 313 REDIRWLQKDFSLYVVNLFDTGVA---LQTLHMPYSLAFAVDHFCQVKLNKKYQTADWRV 369

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSDL 179
             LS E + YA  D   L  +  +     L   GR+ +
Sbjct: 370 RPLSAEMVHYARQDTHFLLYVHDRLKALLLNSEGRASI 407


>gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis]
          Length = 329

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 3/159 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R     A+D E           C+VQ+S       +  +         L     D    
Sbjct: 88  LRTCKEFALDLEHHSYRSFLGLTCLVQISTRTEDFILDALELRGDLY-VLNETFTDPAII 146

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L   FG+ +  VF T  A+R       +H L   LK    ++ +K  Q
Sbjct: 147 KVLHGADSDVEWLQRDFGLYLVNVFDTHQAARQLSLG--RHSLDHLLKLYCNVDANKQYQ 204

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +DW    L +E L YA  D  +L  +  +   +L   G
Sbjct: 205 LADWRIRPLPEEMLNYARDDTHYLLYIYDRVRTELWERG 243


>gi|290982318|ref|XP_002673877.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
           gruberi]
 gi|284087464|gb|EFC41133.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
           gruberi]
          Length = 956

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 3/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
               DA A+D E       +  +C++Q+S       I  +   Q +   L       K  
Sbjct: 358 LEGQDAFAIDLEQHSYRSFQGFVCLMQISTRSEDFLIDTLELRQ-HMHILNSSFTHPKIV 416

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L   F +    +F T  A R          L   LK   GI+  K  Q
Sbjct: 417 KVMHGSDCDILWLQRDFAIYCVNLFDTGQACRTLA--LPGCSLAYLLKHYCGIDADKKYQ 474

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +DW    L  E ++YA  D  +L  +  +  + +
Sbjct: 475 LADWRVRPLPSEMVKYAREDTHYLLYIYDRLRQDI 509


>gi|262370490|ref|ZP_06063816.1| ribonuclease D [Acinetobacter johnsonii SH046]
 gi|262314832|gb|EEY95873.1| ribonuclease D [Acinetobacter johnsonii SH046]
          Length = 380

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 87/212 (41%), Gaps = 10/212 (4%)

Query: 1   MTTIRVHEGDIPAECAARYVDAI-AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M      + D+         + +  +DTE + +     +L + Q++  +    +      
Sbjct: 1   MFQFIQQQQDLTPVLEKMDRNEVYGLDTEFIKVDTLWPKLGVFQINVENNVYLLD--GTT 58

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHG 118
              +     +   ++   +FH    DI ++++      +  VF T++       +  Q  
Sbjct: 59  LDLSEFWNKLFRAQQ--NVFHACSEDIDLIYHYAQHKTLNNVFDTQVGMSFL-GHGLQVS 115

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            ++ LK++L ++I K +  S+W A  LS  QL YAA+DV++L  L  +  ++L       
Sbjct: 116 YQNALKQMLDVDIDKGETRSNWLARPLSPAQLSYAANDVLYLMNLSEKVKQELDSKSLLH 175

Query: 179 LATSCCNFLMDRAELDL---LGWENVDIFSHS 207
            A   C  L      +    L ++++  + HS
Sbjct: 176 FALEDCQHLTQEIATETPLHLLYQDIGNYRHS 207


>gi|312066427|ref|XP_003136265.1| 3'-5' exonuclease [Loa loa]
 gi|307768577|gb|EFO27811.1| 3'-5' exonuclease [Loa loa]
          Length = 845

 Score =  148 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 3/151 (1%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           VD E           C++Q+S       I        +   L     D    K+FH    
Sbjct: 287 VDLEHNAQRSFLGLTCLMQISTRQTDYIIDPFPLWN-DMHILNEPFTDPNILKVFHGADS 345

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           DI  L   FG+ V  +F T  A R+     ++   +  ++      + K  Q +DW    
Sbjct: 346 DIVWLQRDFGIYVVNMFDTYKAMRVLNY--SKFSYQHLVQTCCNHTLDKKFQKADWRLRP 403

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           L+     YA SD  +L     Q   KL   G
Sbjct: 404 LTGAHKTYARSDTHYLLHCYDQLRIKLLDQG 434


>gi|146329754|ref|YP_001210006.1| ribonuclease D [Dichelobacter nodosus VCS1703A]
 gi|146233224|gb|ABQ14202.1| ribonuclease D [Dichelobacter nodosus VCS1703A]
          Length = 355

 Score =  148 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           D+E +       +L +VQ+         +I +    +   ++   L  ++   + H    
Sbjct: 25  DSEFVRERHYYPKLSLVQIMQPAWQKAQLIDMQ--SELCCSVWQQLAQQRAPVVIHAASQ 82

Query: 85  DIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143
           D+  L +  G  +  +F  T+I   L   +         ++  LGI++ K++  SDW A 
Sbjct: 83  DLE-LMHLHGQLLPNMFRDTQIGFSLISPH-KAISYLGFVQHYLGIDLDKSETRSDWLAR 140

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            L++EQ QYAA+DV  L          LQRL R       C  L+
Sbjct: 141 PLTNEQCQYAANDVGLLLQAYPLLCADLQRLNRMHWWQEECQNLL 185


>gi|170575788|ref|XP_001893385.1| 3'-5' exonuclease family protein [Brugia malayi]
 gi|158600662|gb|EDP37784.1| 3'-5' exonuclease family protein [Brugia malayi]
          Length = 847

 Score =  148 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           VD E           C++Q+S       I        +   L     D    K+FH    
Sbjct: 290 VDLEHNAQRSFLGLTCLMQISTRQMDYIIDPFPLWN-DMHILNEPFTDPNILKVFHGADS 348

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           DI  L   FG+ V  +F T  A R+     ++   +  ++      + K  Q +DW    
Sbjct: 349 DIVWLQRDFGIYVVNMFDTYKAMRVLN--FSKFSYQHLVQTCCNHTLDKKFQKADWRLRP 406

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKL 171
           L+     YA SD  +L     Q  ++L
Sbjct: 407 LTIAHKTYARSDTHYLLHCYDQLRKRL 433


>gi|169767462|ref|XP_001818202.1| exosome complex exonuclease Rrp6 [Aspergillus oryzae RIB40]
 gi|83766057|dbj|BAE56200.1| unnamed protein product [Aspergillus oryzae]
          Length = 760

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +   +  + ++Q+S  D    +  +   ++    L  +  D    
Sbjct: 236 LKSAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVFADPSIL 295

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ V  +F T  A+        +  LK  L++ +     K  Q
Sbjct: 296 KVFHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLQKFVNFEADKRYQ 353

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    + +    YA SD  +L  +      +L  
Sbjct: 354 MADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNELIE 390


>gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 524

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 2/139 (1%)

Query: 40  CIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           C++Q+S       I  +         L  +  D  + K+ H    DI  L   F V V  
Sbjct: 4   CLMQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWLQRDFRVYVCN 63

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           +F T  ASR+      ++ L+  L    G+  +K  Q++DW +  LSDE ++YA  D  +
Sbjct: 64  LFDTGQASRVL--QMERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTHY 121

Query: 160 LHALRLQFTEKLQRLGRSD 178
           L  +      +LQR   S+
Sbjct: 122 LLYIYDLMRLRLQRESTSE 140


>gi|270007326|gb|EFA03774.1| hypothetical protein TcasGA2_TC013885 [Tribolium castaneum]
          Length = 890

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 5/170 (2%)

Query: 4   IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           I + + +   E     R+    +VD E           C++Q+S  D    I  +A  + 
Sbjct: 257 IEIDKAEQLDELVETLRHCKEFSVDVEHHSYRSFMGITCLIQISTEDKDYLIDALAL-RD 315

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +       KIFH    DI  L     + V  +F T  A++  +       L  
Sbjct: 316 KLSILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMFDTHQAAKALQY--PALSLAF 373

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +K+   +  +K  Q +DW    L DE   YA  D  +L  +      +L
Sbjct: 374 LMKKFCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYIYKMMKREL 423


>gi|320588480|gb|EFX00949.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
          Length = 1631

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 61/171 (35%), Gaps = 2/171 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +   EG        R  D IAVD E          L ++Q+S  +    +  +   +   
Sbjct: 231 VDTFEGVQAMLEELRQADVIAVDLEHHDFRTYTGLLSLMQISTREKDWVVDTLTPWRHRL 290

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  D  + K+FH    DI  L    G+ +  +F T  A            L   L
Sbjct: 291 EILNEVFADPTKIKVFHGATSDIVWLQRDLGLYIVGLFDTYFACDCLEYPAR--SLAYLL 348

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           K+ +  +  K  Q +DW    L +E L YA SD   L  +      +L   
Sbjct: 349 KKFVDFDADKKYQMADWRIRPLPEEMLYYARSDTHFLLYVYDMVRNELAEK 399


>gi|296419821|ref|XP_002839490.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635651|emb|CAZ83681.1| unnamed protein product [Tuber melanosporum]
          Length = 838

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 3/161 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    IAVD E           C++QLS  D    +  +    +  P L  +  + +  K
Sbjct: 254 RRCTEIAVDLEHHDTRTYIGLTCLMQLSTRDDDYIVDTLKLRGQLEP-LNEIFTNPRVIK 312

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           + H    DI  L    G+ +  +F T  A++       + GL   LK+ +  +  K  Q 
Sbjct: 313 VLHGAFMDIIWLQRDLGLYIVGLFDTFYAAQALE--FARFGLAHILKKYVNFDADKQYQM 370

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +DW    L  E L YA SD  +L          L    R D
Sbjct: 371 ADWRLRPLPKEMLDYARSDTHYLLYCFDCMRNSLVEKSRGD 411


>gi|156542538|ref|XP_001599044.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 1138

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 3/156 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
                + IAVD E       +   C++Q+S  D    I  +   +     L  +      
Sbjct: 647 DLEKYNEIAVDLEHHSYRSFQGITCLMQISTKDTDYLIDTLTL-RSELHVLNEIFTKPSI 705

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L    G+ +  +F T  A++  +       L   LK    I+ +K  
Sbjct: 706 LKVFHGADSDILWLQRDLGLYIVNMFDTYQAAK--QLGLPFLSLSYLLKTHCEISANKHF 763

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           Q +DW    L +E ++YA  D  +L  ++   +  L
Sbjct: 764 QLADWRIRPLPEELMKYAREDTHYLLYIKDILSNAL 799


>gi|85094529|ref|XP_959900.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
 gi|28921357|gb|EAA30664.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
 gi|40804632|emb|CAF05892.1| related to nucleolar 100K polymyositis-scleroderma protein
           [Neurospora crassa]
          Length = 822

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 2/170 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +  +EG +      +    IA+D E          L ++Q+S  +    I  +   +   
Sbjct: 231 VDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDTLQPWRHKL 290

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  +    K+ H    D+  L    G+ V  +F T  A  +        G    L
Sbjct: 291 EVLNEVFANPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDTYHACAVLGYPGRSLGY--LL 348

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +       K  Q +DW    L +E   YA SD  +L  +      +L  
Sbjct: 349 SKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFDMIINELVE 398


>gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 341

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 2/152 (1%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           VD E       +   C++Q+S       +  +        +L  + +D  ++K+ H    
Sbjct: 16  VDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADR 75

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           DI  L   FG+ +  +F T  ASR+ +    ++ L+  L+   G+  +K  Q++DW A  
Sbjct: 76  DIVWLQRDFGIYICNMFDTGQASRVLKM--ERYSLQHLLQHFCGVTANKEYQNADWRARP 133

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           L D  ++Y   D  +L  +      KL  L +
Sbjct: 134 LPDVMIKYGREDTHYLLYIYDLMRIKLFELSK 165


>gi|255934162|ref|XP_002558362.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582981|emb|CAP81189.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 756

 Score =  147 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 2/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +      + ++Q+S  D    +  +   +++   L  +  D K  
Sbjct: 238 LKQAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLQPWREDLQMLNEVFADPKIL 297

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ V  +F T  A+        +  LK  L + +     K  Q
Sbjct: 298 KVLHGSTMDIIWLQRDLGLYVVGMFDTFHAASALG--FPKRSLKFLLSKFVNFEADKRYQ 355

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           ++DW A  L      YA SD  +L  +  +    L
Sbjct: 356 TADWRARPLPPAMFDYARSDTHYLLYIYDRLRNDL 390


>gi|121705450|ref|XP_001270988.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
           NRRL 1]
 gi|119399134|gb|EAW09562.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
           NRRL 1]
          Length = 778

 Score =  147 bits (373), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 2/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +      + ++Q+S  D    +  +   +++   L  +  D    
Sbjct: 246 LKSAKEIAIDLEHHDMHSYHGLVSLMQISTRDKDWVVDTLKPWREDLQILNDVFADPAIL 305

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ V  +F T  A+        +  LK  L++ +     K  Q
Sbjct: 306 KVLHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLQKFVNFEADKRYQ 363

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +DW    L      YA SD  +L  +      +L
Sbjct: 364 MADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNEL 398


>gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
 gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I
 gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
          Length = 574

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 30/201 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
                 + +DTET G     DR+ +VQ+   + T  +I +   Q   P L  ++ +    
Sbjct: 19  LENSPYLYLDTETTG-----DRIRLVQIGDEENT-YVIDLYEIQDIEP-LRKLINERGI- 70

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            + H  +FD+  L+   G+     F T IAS L      +H L   +  LLG ++ K+ Q
Sbjct: 71  -VGHNLKFDLKYLYRY-GIFPSATFDTMIASYLLGY--ERHSLNHIVSNLLGYSMDKSYQ 126

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG------------------RSD 178
           +SDW A  LSD QL+YAA+DV+ L  L  +  + L  L                   +S 
Sbjct: 127 TSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELDAERGEELLKTRTAKIFDLKSP 186

Query: 179 LATSCCNFLMDRAELDLLGWE 199
           +A     F+ + A+L++ G+ 
Sbjct: 187 VAIVEMAFVREVAKLEINGFP 207


>gi|240254568|ref|NP_850189.5| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 891

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 4/162 (2%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           AE  A+     AVDTE   L        ++Q+S  +    +  IA        L  +  D
Sbjct: 132 AEILAKEQ-VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIAL-HDVMSILRPVFSD 189

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+FH    D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +
Sbjct: 190 PNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 247

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           K  Q  DW    LS+E ++YA +D  +L  +    T +L++L
Sbjct: 248 KLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQL 289


>gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 892

 Score =  147 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 4/162 (2%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           AE  A+     AVDTE   L        ++Q+S  +    +  IA        L  +  D
Sbjct: 132 AEILAKEQ-VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIAL-HDVMSILRPVFSD 189

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+FH    D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +
Sbjct: 190 PNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 247

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           K  Q  DW    LS+E ++YA +D  +L  +    T +L++L
Sbjct: 248 KLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQL 289


>gi|332024515|gb|EGI64713.1| Exosome component 10 [Acromyrmex echinatior]
          Length = 885

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 10/180 (5%)

Query: 10  DIPAEC-----AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           D PA+        R    IAVD E       +   C++Q+S       I  ++  +    
Sbjct: 268 DKPADINILLEDLRNHKEIAVDLEHHSYRTFQGITCLMQISTIQTDYLIDTLSL-RSELY 326

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +       K+FH    DI  L     + V  +F T  A++          L   L 
Sbjct: 327 QLNEIFTKPSILKVFHGADMDILWLQRDLSLYVVNMFDTHQAAKQLN--LPYLSLAYLLN 384

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRSDLATS 182
           +  GI+ +K  Q +DW    L  E ++YA  D  +L  ++     +L     G+S++  +
Sbjct: 385 KYCGIDPNKHFQLADWRIRPLPLELMKYAREDTHYLLYVKDMLKNELIDAANGKSNILKA 444


>gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 872

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 4/162 (2%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           AE  A+     AVDTE   L        ++Q+S  +    +  IA        L  +  D
Sbjct: 132 AEILAKEQ-VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIAL-HDVMSILRPVFSD 189

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+FH    D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +
Sbjct: 190 PNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 247

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           K  Q  DW    LS+E ++YA +D  +L  +    T +L++L
Sbjct: 248 KLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQL 289


>gi|261327471|emb|CBH10446.1| ribosomal RNA processing protein 6, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 738

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 9/172 (5%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAG 59
           T      D+ A  A       IAVD E       +   C++Q+S    D  VD +++ A 
Sbjct: 247 TFVDTVEDLEAVVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRAN 306

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
                 +  + +     K+FH  R D+  L   FG+ +  +F T IA    +     H L
Sbjct: 307 MYL---MAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSL 360

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              +     + ++K  Q++DW    +  E + YA  D   L  +  +  + L
Sbjct: 361 AFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQLL 412


>gi|145252306|ref|XP_001397666.1| exosome complex exonuclease Rrp6 [Aspergillus niger CBS 513.88]
 gi|134083214|emb|CAK42852.1| unnamed protein product [Aspergillus niger]
          Length = 782

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 2/162 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +   +  + ++Q+S  D    +  +   ++    L  +  D    
Sbjct: 244 LKAAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQVLNEVFTDPNIL 303

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ V  +F T  A+        +  LK  L++ +     K  Q
Sbjct: 304 KVLHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLQKFVNFEADKRYQ 361

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            +DW    + +    YA SD  +L  +      +L      D
Sbjct: 362 MADWRIRPIPEGMFDYARSDTHYLLHIYDHIRNELVENSLPD 403


>gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva]
          Length = 1786

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 17/197 (8%)

Query: 18   RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------------ 65
            +   A+ VD ET GL    +++ +VQLS  +    II +     N P+            
Sbjct: 1217 KDPKAVGVDIETTGLDHNTNQIRLVQLSVPNQPSLIIDLFKLSTNNPDAESVVPGRNELI 1276

Query: 66   ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLK 120
                L  +   ++  K+FH G+FDI  L         P+F T +AS+L          L 
Sbjct: 1277 KCEWLKKLFKSKETVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASKLLVASRYISCKLT 1336

Query: 121  DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
               +  L I + K QQ SDWS   L +EQL Y+A D   L  L +     L+    SD+A
Sbjct: 1337 HVSERYLNIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLYVILEHLLKINNLSDIA 1396

Query: 181  TSCCNFLMDRAELDLLG 197
            +     ++  ++++L G
Sbjct: 1397 SVENKCILATSDMELNG 1413


>gi|167392672|ref|XP_001740248.1| exosome complex exonuclease RRP6 [Entamoeba dispar SAW760]
 gi|165895708|gb|EDR23337.1| exosome complex exonuclease RRP6, putative [Entamoeba dispar
           SAW760]
          Length = 517

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +  +V+  AVD E          +C++Q+S       I  I   + +   L     +   
Sbjct: 202 SLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYIIDTITL-RDSITLLNDPFTNPNI 260

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           EK+FH   FD+  L Y FG+ V     +   +R  +       LK  L++   ++  K  
Sbjct: 261 EKVFHGCDFDMIWLSYNFGLYVVNCIDSGQCARALKLQH--FSLKYLLQKYCNVDADKKY 318

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           Q +DW    L+ E ++YA  D  +L  +  Q   +   +G  +   +  N L  R
Sbjct: 319 QLADWRLRPLTKEMIEYARGDTHYLLYIIDQLRNECIDVGILEEVLNKSNELCLR 373


>gi|222637126|gb|EEE67258.1| hypothetical protein OsJ_24424 [Oryza sativa Japonica Group]
          Length = 949

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 6/170 (3%)

Query: 8   EGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           E D   E  AR +D   A AVDTE   L        ++Q+S       I  IA       
Sbjct: 149 ETDAQLEDLARLLDDEKAFAVDTEQHSLRSFLGYTALMQISTQKADYLIDTIAL-HDVMS 207

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  +    KIFH    D+  L   F + V  +F T  A  +      Q  L   L+
Sbjct: 208 ILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQKSLAYLLE 265

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
              G+   K  Q  DW    L+ E +QYA  D  +L  +      +L   
Sbjct: 266 LYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAK 315


>gi|218199707|gb|EEC82134.1| hypothetical protein OsI_26176 [Oryza sativa Indica Group]
          Length = 949

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 63/170 (37%), Gaps = 6/170 (3%)

Query: 8   EGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           E D   E  AR +D   A AVDTE   L        ++Q+S       I  IA       
Sbjct: 149 ETDAQLEDLARLLDDEKAFAVDTEQHSLRSFLGYTALMQISTQKADYLIDTIAL-HDVMS 207

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  +    KIFH    D+  L   F + V  +F T  A  +      Q  L   L+
Sbjct: 208 ILRPVFANPSICKIFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQKSLAYLLE 265

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
              G+   K  Q  DW    L+ E +QYA  D  +L  +      +L   
Sbjct: 266 LYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAK 315


>gi|72387778|ref|XP_844313.1| ribosomal RNA processing protein 6 [Trypanosoma brucei TREU927]
 gi|62359465|gb|AAX79902.1| ribosomal RNA processing protein 6 [Trypanosoma brucei]
 gi|70800846|gb|AAZ10754.1| ribosomal RNA processing protein 6 [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 736

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 9/172 (5%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAG 59
           T      D+ A  A       IAVD E       +   C++Q+S    D  VD +++ A 
Sbjct: 247 TFVDTVEDLEALVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRAN 306

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
                 +  + +     K+FH  R D+  L   FG+ +  +F T IA    +     H L
Sbjct: 307 MYL---MAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSL 360

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              +     + ++K  Q++DW    +  E + YA  D   L  +  +  + L
Sbjct: 361 AFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQLL 412


>gi|14250912|emb|CAC39261.1| Rrp6p homologue [Trypanosoma brucei]
          Length = 703

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 9/172 (5%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAG 59
           T      D+ A  A       IAVD E       +   C++Q+S    D  VD +++ A 
Sbjct: 214 TFVDTVEDLEALVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRAN 273

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
                 +  + +     K+FH  R D+  L   FG+ +  +F T IA    +     H L
Sbjct: 274 MYL---MAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIA---LQNLHMPHSL 327

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              +     + ++K  Q++DW    +  E + YA  D   L  +  +  + L
Sbjct: 328 AFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQLL 379


>gi|183231928|ref|XP_650756.2| exosome component 10 [Entamoeba histolytica HM-1:IMSS]
 gi|169802269|gb|EAL45368.2| exosome component 10, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 517

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 3/176 (1%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            +  +V+  AVD E          +C++Q+S       I  I   + +   L     +  
Sbjct: 201 VSLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYIIDTITL-RDSITLLNDPFTNPN 259

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
            EK+FH   FD+  L Y FG+ V     +   +R  +       LK  L++   ++  K 
Sbjct: 260 IEKVFHGCDFDMIWLSYNFGLYVVNCIDSGQCARALKLQH--FSLKYLLQKYCNVDADKK 317

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
            Q +DW    L+ E ++YA  D  +L  +  Q   +    G  +   +  N L  R
Sbjct: 318 YQLADWRLRPLTKEMIEYARGDTHYLLYIIDQLRNECIDAGVLEEVLNKSNELCLR 373


>gi|126667419|ref|ZP_01738391.1| ribonuclease D [Marinobacter sp. ELB17]
 gi|126628175|gb|EAZ98800.1| ribonuclease D [Marinobacter sp. ELB17]
          Length = 382

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 4/187 (2%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
             +    AA+  + + +DTE   +        +VQL   D    +       + +     
Sbjct: 25  EQLDDWLAAQPTEPLTLDTEFERVSTYYPIPGLVQLGLADQFRLVDP--EVAEASAGFRA 82

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
            L D +R K+ +    D+ +  +  G+ ++ V   ++            G    ++ L G
Sbjct: 83  ALEDAQRPKLLYAVSEDLELFRHWLGIPMQGVIDLQLGVAFA-GLGFSMGYAKLVESLFG 141

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFL 187
            ++ K    SDW +  LSD Q +YA  DV  L  +     E L   G +  L      F 
Sbjct: 142 ESLDKTLTRSDWISRPLSDVQQRYAIDDVRFLKPIYDWLQEVLAERGLQQALVEESARFA 201

Query: 188 MDRAELD 194
            D A  D
Sbjct: 202 ADLASQD 208


>gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis]
          Length = 680

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 4/164 (2%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            A       D  A+D E           C+VQLS G     I  +A  Q +   L  +L 
Sbjct: 127 AAAMELYEQDRTALDVEHHSTHTYSGLTCLVQLSTGSKDYLIDSLALRQ-DMHLLAPVLS 185

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           + +  K+ H G  D   L   FG+ +  VF T+ A ++   +  Q  L   L+   GI  
Sbjct: 186 NPRICKVIHGGGNDAVWLQRDFGLFLVNVFDTEKACQVLGYH--QRSLGALLQRFCGIQA 243

Query: 132 SKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            K+  Q +DW    LS E + YA  DV HL  +  +   +L   
Sbjct: 244 DKSLGQRADWRRRPLSAELIDYARRDVQHLLTIADRLGHELLAE 287


>gi|315054289|ref|XP_003176519.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
 gi|311338365|gb|EFQ97567.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
          Length = 827

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 2/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    +  +   +     L  +  D    
Sbjct: 267 LKQAKEIAVDLEHHDGHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQILNEVFADPSIV 326

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+ +      +  LK  L E +G +  K  Q
Sbjct: 327 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASVL--QLPKKSLKFLLHEYVGFDADKKYQ 384

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           ++DW    L    L YA SD   L  +  +   +L
Sbjct: 385 TADWRIRPLLTGMLDYARSDTHFLLYIFDRLRNEL 419


>gi|154336623|ref|XP_001564547.1| exosome subunit rrp6p homologue [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061582|emb|CAM38612.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 735

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 5/158 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              IAVD E       +   C++Q+S  +    I+     +     L  + ++    K+ 
Sbjct: 252 SSEIAVDLEHHDFYSYQGITCLMQISTREEDF-IVDCLQLRSLMGTLAPVFLNPLILKVL 310

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H  R DI  L   F + +   F T +A    +T    + L   +     + ++K  Q++D
Sbjct: 311 HGAREDIRWLQKDFSLYLVNFFDTGVA---LQTLHMPYSLAFAVDHFCQVKLNKKFQTAD 367

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGR 176
           W    LS E + YA  D   L  +  +     L   GR
Sbjct: 368 WRVRPLSAEMVHYARQDTHFLLYVYDRLKALLLNSEGR 405


>gi|294790936|ref|ZP_06756094.1| putative ribonuclease D [Scardovia inopinata F0304]
 gi|294458833|gb|EFG27186.1| putative ribonuclease D [Scardovia inopinata F0304]
          Length = 433

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 8/177 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNA--PNLVGMLVDE 73
           A     +A D E         +  +VQ    G G   +  +A  +K A   +    L D 
Sbjct: 29  ASASGPLAADAERASGYRYSQQDWLVQFKRQGAGIALVDPVAVAEKGAQWEDFNQALGDT 88

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
             E I H    D+   +Y  G+R   +F T+ A+RL        GL    ++ LG+ ++K
Sbjct: 89  --EWIIHDSLQDLPG-YYALGMRPSRLFDTERAARLLGN--AHFGLAAVTEKYLGLTLAK 143

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
              ++DWS   L+ +   YAA DV  L  LR   + +L+R G+ + A     FL+ +
Sbjct: 144 EHSAADWSYRPLNRDMRNYAALDVEVLIELRNTLSAELRRSGKEEWAQEDFAFLLKK 200


>gi|116203503|ref|XP_001227562.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
 gi|88175763|gb|EAQ83231.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
          Length = 827

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 2/171 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +  +EG +      +    IA+D E          L ++Q+S  +    I  +   +   
Sbjct: 230 VDTYEGVLEMLEELKKAPEIAIDLEHHDFRSYTGLLSLMQISTREKDWIIDTLVPWRHKL 289

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  D K  K+ H    DI  L    G+ V  +F T  AS   +       L   L
Sbjct: 290 EVLNEVFADPKIVKVLHGAFMDIIWLQRDLGLYVVGLFDTFYASTALQYAGK--SLAFLL 347

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           K+ +  +  K  Q +DW    L +E   YA SD   L  +      +L +L
Sbjct: 348 KKFVDFDADKKYQLADWRLRPLPEEMFYYARSDTHFLLYIYDMLRNELAQL 398


>gi|41582248|gb|AAR37708.2| ribonuclease D, putative [uncultured marine bacterium 441]
          Length = 177

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 3/146 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+DTE   +      LC++Q++  D    I  ++    N   L   L  +K + I H  
Sbjct: 34  LAIDTEFRRVDSYLPELCLIQIATKDKLECIDVLS--LDNLDPLFVKLYGKKTKWIAHSA 91

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
           R DI  L+         +F T+IA+     Y  Q   ++  + L  + + K     DW  
Sbjct: 92  RQDIEALYSLSNQIPSAIFDTQIAASFLN-YPLQISYQNLTESLENVRLEKKFTRFDWKK 150

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFT 168
             L  + LQYA  DV +L  +  + +
Sbjct: 151 RPLPADVLQYAIDDVKYLIPIHNKLS 176


>gi|311694773|gb|ADP97646.1| ribonuclease D [marine bacterium HP15]
          Length = 385

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 7/192 (3%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           +           +A+DTE   +        +VQL   DG   ++  +  +++      +L
Sbjct: 29  LDKWLDRAPGKPLALDTEFERVNTFYPIPGLVQLGL-DGEFCLVDPSVAEQSG-RFREVL 86

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D    K+ +    D+ +      ++   V   +I + +        G    ++ L G  
Sbjct: 87  ADPDTPKLLYAMSEDLELFRQWLNLQPAGVIDLQIGAAMAGAGF-SLGYARLVETLFGET 145

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           + K+   SDW A  LSD Q +YA  D+  L  +    +  L+  G              R
Sbjct: 146 LDKSATRSDWLARPLSDAQQRYAIDDIRFLEPMYHWVSALLRDRGLEAALVEESA----R 201

Query: 191 AELDLLGWENVD 202
              +L G E+ D
Sbjct: 202 FANELAGQEDPD 213


>gi|125773943|ref|XP_001358230.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
 gi|54637966|gb|EAL27368.1| GA20243 [Drosophila pseudoobscura pseudoobscura]
          Length = 905

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IA+D E           C+VQ+S       I    A ++    L  +L D K+ 
Sbjct: 293 LRRAPHIAIDVEHHSYRTFMGITCLVQMSTRTKD-YIFDSLALREEMHVLNLVLTDPKKV 351

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI  L     + V  +F T  A++       +  L   LK  + +++ K+ Q
Sbjct: 352 KILHGADQDIEWLQRDLSLYVVNMFDTHRAAKALNM--ARLSLAFLLKHYVDLDVDKSLQ 409

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    L  + + YA  D  +L  +  + T  L + 
Sbjct: 410 LADWRMRPLPQQLIDYARQDTHYLIYVYERMTNDLLQA 447


>gi|258566335|ref|XP_002583912.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907613|gb|EEP82014.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 635

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    I +D E          +C++Q+S  D    +  +   ++    L  +  + +  
Sbjct: 243 LKCAKEIGIDLEHHDTHSYYGLVCLMQISTRDKDWIVDTLLPWREELQILNEVFANPQIV 302

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+        +  LK  L + +     K  Q
Sbjct: 303 KVLHGSSMDVIWLQRDLGLYLVGLFDTYHAAAALHY--PKKSLKFLLDKFVNFQAEKKYQ 360

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR-----LGRSDLATS 182
            +DW    L      YA SD  +L  +      +L           D    
Sbjct: 361 IADWRVRPLLPGMFDYARSDTHYLLYIYDHLRNELIERSTPGENLIDYVQE 411


>gi|50085406|ref|YP_046916.1| ribonuclease D, processes tRNA [Acinetobacter sp. ADP1]
 gi|49531382|emb|CAG69094.1| ribonuclease D, processes tRNA [Acinetobacter sp. ADP1]
          Length = 398

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 7/196 (3%)

Query: 1   MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M      +  +    +         +DTE + +     +L + Q+   +G V ++     
Sbjct: 19  MFQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQI-NLNGQVYLLD--GT 75

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHG 118
             +       L    ++ +FH    DI ++++    +    VF T++       +  Q  
Sbjct: 76  ALDLSIFWQKLY-ASKQNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFL-GHGLQVS 133

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            +  LK +L I I K Q  SDW A  LSDEQL+YAA+DV++L  L  Q   +LQ     D
Sbjct: 134 YQAALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYD 193

Query: 179 LATSCCNFLMDRAELD 194
                C  L      D
Sbjct: 194 YVLEDCRHLTQEIGTD 209


>gi|302306959|ref|NP_983403.2| ACL001Cp [Ashbya gossypii ATCC 10895]
 gi|299788769|gb|AAS51227.2| ACL001Cp [Ashbya gossypii ATCC 10895]
          Length = 745

 Score =  145 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 3/161 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            + V  +AVD E          +C++Q+S       +  IA  + +   L  +  D    
Sbjct: 229 LKEVKELAVDLEHHDYRSYYGIVCLMQISSRSKDWLVDTIAL-RDDLHVLNVIFTDPTVV 287

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    D+  L    G+ V  +F T  ASR       +H L   L+       SK  Q
Sbjct: 288 KVFHGAFMDMIWLQRDLGLYVVSLFDTYHASRALG--FPKHSLAYLLETFAKFKTSKKYQ 345

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            +DW    L      YA SD   L ++       L + G+ 
Sbjct: 346 LADWRVRPLPKPLRDYARSDTHFLLSIYDDLRNALVKAGKL 386


>gi|323258057|gb|EGA41735.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 125

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 4/124 (3%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            +  + + C A R   AIA+DTE +       +L ++QL  G     I  +  G  +   
Sbjct: 4   TDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGANVALIDPL--GISDWSP 61

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K  H G  D+ V    FG    P+  T+I +          G    ++E
Sbjct: 62  LKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLIDTQILAAFC-GRPLSWGFASMVEE 120

Query: 126 LLGI 129
             G+
Sbjct: 121 YTGV 124


>gi|67537662|ref|XP_662605.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
 gi|40741889|gb|EAA61079.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
 gi|259482125|tpe|CBF76306.1| TPA: exosome complex exonuclease Rrp6, putative (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 1297

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 2/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +      + ++Q+S  +    +  +   ++    L  +  D    
Sbjct: 246 LKSAREIAIDLEHHDVHSYHGLVSLMQISTREKDWVVDTLKPWREELQMLNEVFADPNIL 305

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ V  +F T  A+        +  LK  L + +     K  Q
Sbjct: 306 KLFHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKKSLKYLLHKFVNFEADKQYQ 363

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +DW    L      YA SD  +L  +      +L
Sbjct: 364 MADWRIRPLPSGMFNYARSDTHYLLYIYDNLRNEL 398


>gi|119491955|ref|XP_001263472.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
           NRRL 181]
 gi|119411632|gb|EAW21575.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
           NRRL 181]
          Length = 765

 Score =  145 bits (367), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 2/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +      + ++Q+S  D    +  +   ++    L  +  D    
Sbjct: 241 LKSAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLKPWREELQILNEVFADPGIL 300

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ V  +F T  A+        +  LK  L++ +     K  Q
Sbjct: 301 KVLHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLQKFVNFEADKRYQ 358

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +DW    L      YA SD  +L  +      +L
Sbjct: 359 MADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNEL 393


>gi|119511988|ref|ZP_01631084.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414]
 gi|119463339|gb|EAW44280.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414]
          Length = 871

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQ-LSPGDGTVDIIRIAAGQKNAPNLVG-----MLVDE 73
              + +DTE         RL ++Q L+    +  +        + P+L       ++++ 
Sbjct: 20  HKTLWLDTEIADFTTHYPRLSLIQVLADPTDSTGVSAYLLDVLDKPDLAEYFINQIMINP 79

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLK--DNLKELLG-I 129
             EK+FH   FD+  L        + + CT +IA ++TR       LK      EL   +
Sbjct: 80  NIEKVFHNAGFDLKYL---GKKLAQNITCTYQIARKITRDRLKVSNLKLKTLAAELCHFV 136

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           N+   + SSDW    LSD+Q++YAA D V+L A+  +  E
Sbjct: 137 NVDADEGSSDWGKRPLSDKQVKYAAMDTVYLAAVHRKLLE 176


>gi|238484333|ref|XP_002373405.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
           NRRL3357]
 gi|220701455|gb|EED57793.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
           NRRL3357]
          Length = 434

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +   +  + ++Q+S  D    +  +   ++    L  +  D    
Sbjct: 236 LKSAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVFADPSIL 295

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L    G+ V  +F T  A+        +  LK  L++ +     K  Q
Sbjct: 296 KVFHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLQKFVNFEADKRYQ 353

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    + +    YA SD  +L  +      +L  
Sbjct: 354 MADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNELIE 390


>gi|189096244|pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium
           Adolescentis
          Length = 440

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLVD 72
            A    ++A D E            +VQ    G G   +    +AA   +  +    + D
Sbjct: 34  LASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGD 93

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
                I H    D+       G+  + +F T+IA+RL      + GL    +  LG+ ++
Sbjct: 94  A--VWILHDSLQDLPGF-DELGMEPQRLFDTEIAARLLG--LKRFGLAAVTEHFLGLTLA 148

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           K   ++DWS   L  +   YAA DV  L  L  +   +L+R G+ + A    ++
Sbjct: 149 KEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDY 202


>gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata]
 gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata]
          Length = 1786

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 84/197 (42%), Gaps = 17/197 (8%)

Query: 18   RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------------ 65
            +   A+ VD ET GL    +++ +VQLS  +    II +     N P             
Sbjct: 1217 KDPKAVGVDIETTGLDHNTNQIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVVPGRNELI 1276

Query: 66   ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLK 120
                L  +   +   K+FH G+FDI  L         P+F T +AS+L          L 
Sbjct: 1277 KCEWLKNLFKSKDTVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASKLLVASRYISCKLT 1336

Query: 121  DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
               +  L I + K QQ SDWS   L +EQL Y+A D   L  L +     L+    +D+A
Sbjct: 1337 HVSERYLNIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLYVILEHLLKINNLADIA 1396

Query: 181  TSCCNFLMDRAELDLLG 197
            +     ++  ++++L G
Sbjct: 1397 SVENKCILATSDMELNG 1413


>gi|119026007|ref|YP_909852.1| hypothetical protein BAD_0989 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765591|dbj|BAF39770.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 431

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLVD 72
            A    ++A D E            +VQ    G G   +    +AA   +  +    + D
Sbjct: 32  LASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGD 91

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
                I H    D+       G+  + +F T+IA+RL      + GL    +  LG+ ++
Sbjct: 92  A--VWILHDSLQDLPGF-DELGMEPQRLFDTEIAARLLG--LKRFGLAAVTEHFLGLTLA 146

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           K   ++DWS   L  +   YAA DV  L  L  +   +L+R G+ + A    ++
Sbjct: 147 KEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDY 200


>gi|302501205|ref|XP_003012595.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
           CBS 112371]
 gi|291176154|gb|EFE31955.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
           CBS 112371]
          Length = 1069

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 2/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    +  +   +     L  +  D    
Sbjct: 446 LKQAKEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 505

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+        +  LK  L E +G +  K  Q
Sbjct: 506 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQ 563

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           ++DW    L    L YA SD   L  +  +   +L  L
Sbjct: 564 TADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLEL 601


>gi|195037619|ref|XP_001990258.1| GH19240 [Drosophila grimshawi]
 gi|193894454|gb|EDV93320.1| GH19240 [Drosophila grimshawi]
          Length = 911

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 3/159 (1%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A    R    IA+D E           C+VQ+S       I      + +   L  +L D
Sbjct: 294 ALAELRLAHQIAIDVEHHSYRTFMGITCLVQMSTRTKD-YIFDTLILRDDMHILNLVLTD 352

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            K  KI H G  DI  L     + +  +F T  A++       +  L   LK  L +++ 
Sbjct: 353 PKVLKILHGGDLDIEWLQRDLSLYIVNMFDTHRAAKALN--LARLSLAFLLKFYLDMDVD 410

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           K+ Q +DW    L  + + YA  D  +L  +  +    L
Sbjct: 411 KSLQLADWRMRPLPQKLIDYARQDTHYLIYIYERLVNDL 449


>gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 891

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 4/162 (2%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           AE  A+     AVDTE   L        ++Q+S  +    +  I         L  +  +
Sbjct: 131 AEILAKE-KVFAVDTEQHSLRSFLGFTALIQISTHEKDFLVDTI-VLHDAMSILRPVFSE 188

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+FH    D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +
Sbjct: 189 PNICKVFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 246

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           K  Q  DW    LS+E ++YA +D  +L  +    T +L++L
Sbjct: 247 KLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTAELKQL 288


>gi|154488712|ref|ZP_02029561.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis
           L2-32]
 gi|154082849|gb|EDN81894.1| hypothetical protein BIFADO_02019 [Bifidobacterium adolescentis
           L2-32]
          Length = 431

 Score =  145 bits (366), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLVD 72
            A    ++A D E            +VQ    G G   +    +AA   +  +    + D
Sbjct: 32  LASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGD 91

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
                I H    D+       G+  + +F T+IA+RL      + GL    +  LG+ ++
Sbjct: 92  A--VWILHDSLQDLPGF-DELGMEPQRLFDTEIAARLLG--LKRFGLAAVTEHFLGLTLA 146

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           K   ++DWS   L  +   YAA DV  L  L  +   +L+R G+ + A    ++
Sbjct: 147 KEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDY 200


>gi|195143871|ref|XP_002012920.1| GL23665 [Drosophila persimilis]
 gi|194101863|gb|EDW23906.1| GL23665 [Drosophila persimilis]
          Length = 903

 Score =  144 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 4/159 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IA+D E           C+VQ+S       I    A ++    L  +L D K+ 
Sbjct: 293 LRRAPHIAIDVEHHSYRTFMGITCLVQMSTRTKD-YIFDSLALREEMHVLNLVLTDPKKV 351

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI  L     + V  +F T  A++       +  L   LK  + +++ K+ Q
Sbjct: 352 KILHGADQDIEWLQRDLSLYVVNMFDTHRAAKALNM--ARLSLAFLLKHYVDLDVDKSLQ 409

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQF-TEKLQRL 174
            +DW    L  + + YA  D  +L  +  +   + LQ  
Sbjct: 410 LADWRMRPLPQQLIDYARQDTHYLIYVYERMTNDILQAE 448


>gi|326473059|gb|EGD97068.1| hypothetical protein TESG_04488 [Trichophyton tonsurans CBS 112818]
          Length = 898

 Score =  144 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 2/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +  + IAVD E          +C++Q+S  +    +  +   +     L  +  D    
Sbjct: 249 LKQAEEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 308

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+        +  LK  L E +G +  K  Q
Sbjct: 309 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQ 366

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           ++DW    L    L YA SD   L  +  +   +L
Sbjct: 367 TADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQL 401


>gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana]
          Length = 327

 Score =  144 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 4/162 (2%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           AE  A+     AVDTE   L        ++Q+S  +    +  IA        L  +  D
Sbjct: 132 AEILAKEQ-VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIAL-HDVMSILRPVFSD 189

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+FH    D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +
Sbjct: 190 PNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 247

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           K  Q  DW    LS+E ++YA  D  +L  +    T +L++L
Sbjct: 248 KLLQREDWRQRPLSEEMVRYARXDAHYLLYIADSLTTELKQL 289


>gi|190344443|gb|EDK36119.2| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 755

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 62/170 (36%), Gaps = 4/170 (2%)

Query: 7   HEGDIPA-ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            E D+            IAVD E          +C++Q+S  +    II     + +   
Sbjct: 230 TESDLSQMVSDLSSQTEIAVDLEHHDYRSYLGIVCLMQISSREKD-WIIDTLKLRDSLVV 288

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +  +    K+FH    DI  L    G+ V  +F T  AS+       +  L   L+ 
Sbjct: 289 LNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASKKLG--LPRFSLAYLLEN 346

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
                 SK  Q +DW    LS   L YA SD   L  +  Q   +L   G
Sbjct: 347 YANFKTSKKYQLADWRMRPLSGPMLSYARSDTHFLLYVYDQLRNQLLSSG 396


>gi|159127645|gb|EDP52760.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
           A1163]
          Length = 764

 Score =  144 bits (365), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 2/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +      + ++Q+S  D    +  +   ++    L  +  D    
Sbjct: 241 LKSAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLKPWREELQILNEVFADPGIL 300

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ V  +F T  A+        +  LK  L + +     K  Q
Sbjct: 301 KVLHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLHKFVNFEADKRYQ 358

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +DW    L      YA SD  +L  +      +L
Sbjct: 359 MADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNEL 393


>gi|70999828|ref|XP_754631.1| exosome complex exonuclease Rrp6 [Aspergillus fumigatus Af293]
 gi|66852268|gb|EAL92593.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
           Af293]
          Length = 764

 Score =  144 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 2/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +      + ++Q+S  D    +  +   ++    L  +  D    
Sbjct: 241 LKSAKEIAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLKPWREELQILNEVFADPGIL 300

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ V  +F T  A+        +  LK  L + +     K  Q
Sbjct: 301 KVLHGSSMDIIWLQRDLGLYVVGMFDTYHAA--CALNYPKRSLKFLLHKFVNFEADKRYQ 358

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +DW    L      YA SD  +L  +      +L
Sbjct: 359 MADWRIRPLPSGMFDYARSDTHYLLYIYDHLRNEL 393


>gi|328767973|gb|EGF78021.1| hypothetical protein BATDEDRAFT_27210 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 826

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 3/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
              V   AVD E       +   C++Q+S       +  +   + +   L     + +  
Sbjct: 264 LEGVTEFAVDLEHHDFRSYQGFTCLMQISTRTEDFLVDTL-ILRNSLHALNTSFANPQIV 322

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+FH    DI  L   FGV V  +F T  AS         H L   LK    +   K  Q
Sbjct: 323 KVFHGAEMDIQWLQRDFGVYVVDLFDTYHASHALE--LEGHSLAFLLKYYCDVVTDKRYQ 380

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            +DW    L  E + YA  D  +L  +  +   +L
Sbjct: 381 LADWRIRPLPKEMVHYARMDTHYLLYIFDRMRNEL 415


>gi|289178849|gb|ADC86095.1| Ribonuclease D [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 440

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 8/168 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKI 78
            +A D E            ++Q    G     +  IA  ++  +       + D   E I
Sbjct: 48  PLATDAERASGYRYGHEDWLIQFKRDGAPIALLDPIALDEQGVDWNAFNEAVGDA--EWI 105

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H  R D+       G++ R +F T+IA++L   +  + GL       LGI ++K   ++
Sbjct: 106 LHDSRQDLPGFAQ-IGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEHSAA 162

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           DWS   L  +   YAA DV  L  L    T +L+R G+ + A    ++
Sbjct: 163 DWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDY 210


>gi|327308500|ref|XP_003238941.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
 gi|326459197|gb|EGD84650.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
          Length = 867

 Score =  144 bits (364), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 2/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    +  +   +     L  +  D    
Sbjct: 259 LKQAKEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 318

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+        +  LK  L E +G +  K  Q
Sbjct: 319 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQ 376

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           ++DW    L    L YA SD   L  +  +   +L
Sbjct: 377 TADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQL 411


>gi|219683452|ref|YP_002469835.1| ribonuclease D [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621102|gb|ACL29259.1| putative ribonuclease D [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 430

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 8/168 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKI 78
            +A D E            ++Q    G     +  IA  ++  +       + D   E I
Sbjct: 38  PLATDAERASGYRYGHEDWLIQFKRDGAPIALLDPIALDEQGVDWNAFNEAVGDA--EWI 95

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H  R D+       G++ R +F T+IA++L   +  + GL       LGI ++K   ++
Sbjct: 96  LHDSRQDLPGFAQ-IGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEHSAA 152

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           DWS   L  +   YAA DV  L  L    T +L+R G+ + A    ++
Sbjct: 153 DWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDY 200


>gi|183601395|ref|ZP_02962765.1| hypothetical protein BIFLAC_02027 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191105|ref|YP_002968499.1| hypothetical protein Balac_1081 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196511|ref|YP_002970066.1| hypothetical protein Balat_1081 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219001|gb|EDT89642.1| hypothetical protein BIFLAC_02027 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249497|gb|ACS46437.1| hypothetical protein Balac_1081 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251065|gb|ACS48004.1| hypothetical protein Balat_1081 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794094|gb|ADG33629.1| hypothetical protein BalV_1041 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 433

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 8/168 (4%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKI 78
            +A D E            ++Q    G     +  IA  ++  +       + D   E I
Sbjct: 41  PLATDAERASGYRYGHEDWLIQFKRDGAPIALLDPIALDEQGVDWNAFNEAVGDA--EWI 98

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            H  R D+       G++ R +F T+IA++L   +  + GL       LGI ++K   ++
Sbjct: 99  LHDSRQDLPGFAQ-IGLKPRRLFDTEIAAKLLGLH--RVGLAYVTAHFLGITLAKEHSAA 155

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           DWS   L  +   YAA DV  L  L    T +L+R G+ + A    ++
Sbjct: 156 DWSYRPLPRDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEEFDY 203


>gi|112491261|pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain
 gi|112491264|pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn
 gi|112491267|pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
 gi|112491277|pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
          Length = 410

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 3/175 (1%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    IAVD E          +C++Q+S  +    +  +   ++N   L  +  +   
Sbjct: 102 DLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTL-KLRENLHILNEVFTNPSI 160

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    DI  L    G+ V  +F T  AS+       +H L   L+       SK  
Sbjct: 161 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG--LPRHSLAYLLENFANFKTSKKY 218

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           Q +DW    LS      A +D   L  +  Q   KL    +          +  R
Sbjct: 219 QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKR 273


>gi|195570818|ref|XP_002103401.1| GD20396 [Drosophila simulans]
 gi|194199328|gb|EDX12904.1| GD20396 [Drosophila simulans]
          Length = 896

 Score =  143 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IA+D E           C+VQ+S       I      + +   L  +L D K+ 
Sbjct: 287 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDDMHILNLVLTDPKKL 345

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI  L     + +  +F T  A++       +  L   LK  L +++ K+ Q
Sbjct: 346 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAYLLKHYLDLDVDKSLQ 403

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    L  + + YA  D   L  +  + T  L + 
Sbjct: 404 LADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLQQ 441


>gi|67593930|ref|XP_665760.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54656583|gb|EAL35530.1| hypothetical protein Chro.50386 [Cryptosporidium hominis]
          Length = 875

 Score =  143 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 2/149 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D E       +  + ++QLS       I            L  +  + K  K+ H  
Sbjct: 304 LAIDVEHHSNQSYKGFVSLIQLSTRTHDYIIDPFNLFN-EIQMLNELTANPKILKVLHGS 362

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +DI  L   F V +  +F T  A+R+  T    + LK+ L     ++I K  Q +DW  
Sbjct: 363 DYDIIWLQRDFSVYIVNMFDTGQAARILNTPG-GYSLKNLLSIYCSLDIDKRFQLADWRE 421

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             LS+E ++YA  D  +L  +       L
Sbjct: 422 RPLSNELIEYARGDTHYLLYIYDIMKNLL 450


>gi|66357594|ref|XP_625975.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
           domain and an HRDc domain [Cryptosporidium parvum Iowa
           II]
 gi|46227246|gb|EAK88196.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
           domain and an HRDc domain [Cryptosporidium parvum Iowa
           II]
          Length = 957

 Score =  143 bits (363), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 2/149 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           +A+D E       +  + ++QLS       I            L  +  + K  K+ H  
Sbjct: 304 LAIDVEHHSNQSYKGFVSLIQLSTRTHDYIIDPFNLFN-EIQMLNELTANPKILKVLHGS 362

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            +DI  L   F V +  +F T  A+R+  T    + LK+ L     ++I K  Q +DW  
Sbjct: 363 DYDIIWLQRDFSVYIVNMFDTGQAARILNTPG-GYSLKNLLSIYCSLDIDKRFQLADWRE 421

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             LS+E ++YA  D  +L  +       L
Sbjct: 422 RPLSNELIEYARGDTHYLLYIYDIMKNLL 450


>gi|46123343|ref|XP_386225.1| hypothetical protein FG06049.1 [Gibberella zeae PH-1]
          Length = 807

 Score =  143 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 2/171 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +  +EG +           IAVD E          + ++Q+S  +    +  +   +   
Sbjct: 225 VDTYEGVLEMLGELMKAKEIAVDLEHHDFRSYVGLVSLMQISTREKDWIVDTLQPWRHKL 284

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  + K  K+FH    DI  L    G+ V  +F T  A            L   L
Sbjct: 285 EVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLFDTFFACGQLNYPAK--SLAYLL 342

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            + +  +  K  Q +DW    L  E L YA SD  +L  +  +   +L   
Sbjct: 343 SKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYDRVRNELVAA 393


>gi|149244804|ref|XP_001526945.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449339|gb|EDK43595.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 826

 Score =  143 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 4/185 (2%)

Query: 7   HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +E  + A     +    IAVD E          +C++Q+S  +    I  +A  +     
Sbjct: 236 NEEQLDAMIEELKAASEIAVDLEHHDYRSYYGLVCLMQISNREKDWVIDTLAL-RDELSK 294

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +  + +  K+FH    DI  L    G+ +  +F T  ASR  +    +  L+  L  
Sbjct: 295 LNVIFTNHEIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASR--QLGFAKFSLQYLLDT 352

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
                 SK  Q +DW    L    L YA SD   L  +  Q   KL    +         
Sbjct: 353 FAHFRTSKKYQLADWRIRPLPAPMLAYARSDTHFLLYIYDQLRNKLIDQDKLSKVLFELR 412

Query: 186 FLMDR 190
            +  R
Sbjct: 413 QVAKR 417


>gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana]
          Length = 237

 Score =  143 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 4/162 (2%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           AE  A+     AVDTE   L        ++Q+S  +    +  IA        L  +  D
Sbjct: 68  AEILAKEQ-VFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIAL-HDVMSILRPVFSD 125

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+FH    D+  L   F + V  +F T  A  +      Q  L   L+ + G+  +
Sbjct: 126 PNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSK--PQRSLAYLLETVCGVATN 183

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           K  Q  DW    LS+E ++YA +D  +L  +    T +L++L
Sbjct: 184 KLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQL 225


>gi|171742685|ref|ZP_02918492.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC
           27678]
 gi|283456244|ref|YP_003360808.1| ribonuclease D [Bifidobacterium dentium Bd1]
 gi|171278299|gb|EDT45960.1| hypothetical protein BIFDEN_01799 [Bifidobacterium dentium ATCC
           27678]
 gi|283102878|gb|ADB09984.1| Ribonuclease D [Bifidobacterium dentium Bd1]
          Length = 433

 Score =  143 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 8/176 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGML 70
           +  A    ++A D E            +VQ    G G   +    +A    +  +    +
Sbjct: 33  DLLAAGTGSLAADAERASGYRYGHEDWLVQFKRTGAGIGLLDPQALAQAGADWNDFNRAV 92

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+       G+    +F T+IA+RL   +  + GL    +  LG+ 
Sbjct: 93  GDA--TWILHDSLQDLPGF-ADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLT 147

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           ++K   ++DWS   L  +   YAA DV  L  L  +   +L+R G+ D A     +
Sbjct: 148 LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEQRMRTELKRQGKRDWAEEEFAY 203


>gi|195501501|ref|XP_002097822.1| GE26425 [Drosophila yakuba]
 gi|194183923|gb|EDW97534.1| GE26425 [Drosophila yakuba]
          Length = 900

 Score =  143 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IA+D E           C+VQ+S       I      +     L  +L D K+ 
Sbjct: 287 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDEMHILNLVLTDPKKL 345

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI  L     + +  +F T  A++       +  L   LK  L +++ K+ Q
Sbjct: 346 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALN--LARLSLAYLLKHYLDLDVDKSLQ 403

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    L  + + YA  D   L  +  + T  L + 
Sbjct: 404 LADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLQQ 441


>gi|326477901|gb|EGE01911.1| exosome complex exonuclease Rrp6 [Trichophyton equinum CBS 127.97]
          Length = 824

 Score =  143 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 2/155 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +  + IAVD E          +C++Q+S  +    +  +   +     L  +  D    
Sbjct: 259 LKQAEEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 318

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+        +  LK  L E +G +  K  Q
Sbjct: 319 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQ 376

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           ++DW    L    L YA SD   L  +  +   +L
Sbjct: 377 TADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQL 411


>gi|302657746|ref|XP_003020587.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
           HKI 0517]
 gi|291184437|gb|EFE39969.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
           HKI 0517]
          Length = 881

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 2/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    +  +   +     L  +  D    
Sbjct: 262 LKQAKEIAVDLEHHDSHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSII 321

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+        +  LK  L E +G +  K  Q
Sbjct: 322 KVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQ 379

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           ++DW    L    L YA SD   L  +  +   +L  L
Sbjct: 380 TADWRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLEL 417


>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
          Length = 576

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 27/204 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    + +DTET+       ++ +VQL   +    +     G      L  +LVD+   
Sbjct: 19  LKDESYLFLDTETVSE-----KIRLVQLGNNEDVFIVDLFETGSYGVDFLKDLLVDKGI- 72

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            + H  ++D+  L+   G+    VF T IAS+L     ++H L+      LG  + K+ Q
Sbjct: 73  -VGHNLKYDLKFLYRY-GIEPYAVFDTMIASQLL-GELDRHSLQKVAMHYLGEVLDKSLQ 129

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD-----------------L 179
            S+W    LS EQL+YAA DV  +  L     +KL      +                 +
Sbjct: 130 MSNWGRAVLSKEQLEYAALDVKMVRDLYSILLDKLNSTAHQEETLLKTRTSRVFGLKNPV 189

Query: 180 ATSCCNFLMDRAELDLLGWENVDI 203
           A     F+ + A+L+L G   VDI
Sbjct: 190 AIIEMAFVQEVAKLELNGIG-VDI 212


>gi|189182142|gb|ACD81847.1| LD13130p [Drosophila melanogaster]
          Length = 930

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IA+D E           C+VQ+S       I      + +   L  +L D K+ 
Sbjct: 317 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDDMHILNLVLTDPKKL 375

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI  L     + +  +F T  A++       +  L   LK  L +++ K+ Q
Sbjct: 376 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAYLLKHYLDLDVDKSLQ 433

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    L  + + YA  D   L  +  + T  L + 
Sbjct: 434 LADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQ 471


>gi|320583859|gb|EFW98072.1| hypothetical protein HPODL_0702 [Pichia angusta DL-1]
          Length = 729

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 6/167 (3%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQ-KNAPNL 66
            D+  E +      IAVD E           C++QL+        I  ++     +  NL
Sbjct: 229 DDLLVELS--KCKVIAVDLEHHDYRTYHGITCLMQLTTDTKKDYLIDPLSPELRPHLVNL 286

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +  D    K+FH    DI  L    G+ V  +F T  ASR       +H L   L+  
Sbjct: 287 NVIFTDPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASR--ELGLGRHSLAHLLETY 344

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           +    SK  Q +DW    L+ E   YA +D   L  +  +   +L +
Sbjct: 345 VKFKTSKKWQLADWRMRPLNSEMKNYAKADTHFLIEVFYKMHSELVQ 391


>gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera]
          Length = 935

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 5/164 (3%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           ++    + + V   AVDTE   L        ++Q+S  +    +  IA        L  +
Sbjct: 124 ELADVLSKQRV--FAVDTEQHSLRSFLGFTALIQISTQNEDYLVDTIAL-HDTLDVLQPV 180

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             +    K+FH    D+  L   F + V  +F T  A  +      Q  L   L+   G+
Sbjct: 181 FANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGV 238

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
             +K  Q  DW    LS E L+YA +D  +L  +      +L++
Sbjct: 239 ATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQ 282


>gi|255566405|ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 977

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 5/165 (3%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           ++  E + +     AVDTE   L        +VQ+S       +  IA        L  +
Sbjct: 134 ELTDELSNQ--SVFAVDTEQHSLRSFLGFTALVQISTQKEDYLLDTIAL-HDAMGILGAV 190

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             + K  K+FH G  DI  L   F + V  +F T  A  +      Q  L   L+   G+
Sbjct: 191 FANPKICKVFHGGDNDILWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGV 248

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           + +K  Q  DW    L  E LQYA +D  +L  +      +L++ 
Sbjct: 249 STNKLLQREDWRQRPLPAEMLQYALTDAHYLLYIASCLIAELKQK 293


>gi|302817816|ref|XP_002990583.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
 gi|300141751|gb|EFJ08460.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
          Length = 1449

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 71/185 (38%), Gaps = 6/185 (3%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+    +       AVDTE   +        ++Q+S       I  IA        L  
Sbjct: 770 EDLAQVLSEE--SEFAVDTEQHSIRSFLGFTALIQISTYKRDYLIDAIAL-HDEMETLRP 826

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  +    K+FH    DI  L   F + V  +F T  A  +      Q  L   L+    
Sbjct: 827 VFANASICKVFHGADSDILWLQRDFHIYVVNLFDTARACDVLGK--PQRSLAYLLQTYCN 884

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           I+ +KA Q SDW    L ++ L YA SD   L  +  +   +L + G +DLA +      
Sbjct: 885 ISTNKAFQKSDWRQRPLPEDILLYARSDAHFLLYIARKLYSELLQ-GETDLANAPLQMAT 943

Query: 189 DRAEL 193
            R+ L
Sbjct: 944 RRSHL 948


>gi|120554530|ref|YP_958881.1| 3'-5' exonuclease [Marinobacter aquaeolei VT8]
 gi|120324379|gb|ABM18694.1| 3'-5' exonuclease [Marinobacter aquaeolei VT8]
          Length = 383

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 3/170 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            +A+DTE   +        +VQL   DG   ++     +        ML DE R K+ + 
Sbjct: 38  PVALDTEFERVSTFYPIPGLVQLGA-DGQFWLVDPEVAEAAGS-FRAMLADESRPKLLYA 95

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+ +  +   V    V   +I + L        G    ++ L G  + K+   SDW 
Sbjct: 96  MSEDLELFRHWLNVEPAGVLDLQIGAALAGAGF-SVGYARLVETLFGEALDKSATRSDWV 154

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           +  L+  Q +YA  D+  L  L       L++               + A
Sbjct: 155 SRPLTPAQERYALDDIRFLEPLYGWVLANLRQRNLEHALADESRRFANEA 204


>gi|309801464|ref|ZP_07695591.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
 gi|308221979|gb|EFO78264.1| 3'-5' exonuclease [Bifidobacterium dentium JCVIHMP022]
          Length = 430

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 8/176 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGML 70
           +  A    ++A D E            +VQ    G G   +    +A    +  +    +
Sbjct: 30  DLLAAGTGSLAADAERASGYRYGHEDWLVQFKRTGAGIGLLDPQALAQAGADWNDFNRAV 89

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+       G+    +F T+IA+RL   +  + GL    +  LG+ 
Sbjct: 90  GDA--TWILHDSLQDLPGF-ADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLT 144

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           ++K   ++DWS   L  +   YAA DV  L  L  +   +L+R G+ D A     +
Sbjct: 145 LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEQRMRTELKRQGKRDWAEEEFTY 200


>gi|306822549|ref|ZP_07455927.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
 gi|304554094|gb|EFM42003.1| ribonuclease D [Bifidobacterium dentium ATCC 27679]
          Length = 433

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 8/176 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGML 70
           +  A    ++A D E            +VQ    G G   +    +A    +  +    +
Sbjct: 33  DLLAAGTGSLAADAERASGYRYGHEDWLVQFKRTGAGIGLLDPQALAQAGADWNDFNRAV 92

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+       G+    +F T+IA+RL   +  + GL    +  LG+ 
Sbjct: 93  GDA--TWILHDSLQDLPGF-ADLGMEPHHLFDTEIAARLLGMH--RFGLAAVTEHFLGLT 147

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           ++K   ++DWS   L  +   YAA DV  L  L  +   +L+R G+ D A     +
Sbjct: 148 LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEQRMRTELKRQGKRDWAEEEFTY 203


>gi|161078302|ref|NP_001097795.1| Rrp6 [Drosophila melanogaster]
 gi|158030263|gb|AAF55107.3| Rrp6 [Drosophila melanogaster]
          Length = 900

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IA+D E           C+VQ+S       I      + +   L  +L D K+ 
Sbjct: 287 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDDMHILNLVLTDPKKL 345

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI  L     + +  +F T  A++       +  L   LK  L +++ K+ Q
Sbjct: 346 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAYLLKHYLDLDVDKSLQ 403

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    L  + + YA  D   L  +  + T  L + 
Sbjct: 404 LADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQ 441


>gi|154301232|ref|XP_001551029.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
 gi|150856187|gb|EDN31379.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
          Length = 823

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 2/168 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +  +EG +      +    IAVD E          + ++Q+S  +    +  +   ++  
Sbjct: 226 VDTYEGVLEMLEELKGATEIAVDLEHHDTRSYVGLVSLMQVSTREKDWIVDTLKPWRQQL 285

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  D    K+FH    DI  L    G+ V  +F T  A R  R       L   L
Sbjct: 286 QVLNEVFADPNIIKVFHGAYMDIVWLQRDLGLYVVGLFDTHYACR--RLGFAGGSLAFLL 343

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           K+ +  +  K  Q +DW    L +E   YA +D   L  +      +L
Sbjct: 344 KKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNLRNEL 391


>gi|163841118|ref|YP_001625523.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209]
 gi|162954594|gb|ABY24109.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209]
          Length = 480

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGML 70
            A   A       VD E         R  +VQ+   G GT  I        +   +   L
Sbjct: 92  AARALANGSGPAGVDAERASGFRYGQRAFLVQIRREGAGTWLIDP--EPFDDLKIIDDAL 149

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                E I H    D+  L    G+    +F T++A+R+      + GL   +++LLG  
Sbjct: 150 --NGVEWILHAASQDLPCLS-ELGMWPSALFDTELAARIAG--LPKVGLAAVVEQLLGFG 204

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           ++K   ++DWS   L +  L+YAA DV  L  LR +  E L+  G+ + AT     ++ 
Sbjct: 205 LAKEHSAADWSTRPLPEPWLRYAALDVEVLAELREELIELLEADGKLEWATQEFQAILA 263


>gi|156039491|ref|XP_001586853.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980]
 gi|154697619|gb|EDN97357.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 808

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 2/175 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +  +EG +      +    IAVD E          + ++Q+S  +    +  +   ++  
Sbjct: 226 VDTYEGVLEMLEELKGAKEIAVDLEHHDTRSYVGLVSLMQISTREKDWIVDTLKPWRQQL 285

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  D    K+FH    DI  L    G+ V  +F T  A R  R       L   L
Sbjct: 286 QVLNEVFADPCIIKVFHGAYMDIVWLQRDLGLYVVGLFDTHYACR--RLGLAGGSLAFLL 343

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           K+ +  +  K  Q +DW    L +E   YA +D   L  +      +L     ++
Sbjct: 344 KKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNLRNELIDASNTE 398


>gi|171679581|ref|XP_001904737.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939416|emb|CAP64644.1| unnamed protein product [Podospora anserina S mat+]
          Length = 628

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 11/167 (6%)

Query: 15  CAARYVDAIAVDTETLGL-------MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
                   I VDT  L L             L ++Q+S  +    +  +   +     L 
Sbjct: 17  LDVESTKPIWVDT--LRLIWTHHDFRTYTGLLSLMQISTREKDWIVDTLVPWRHRLEVLN 74

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +  D    K+FH    D+  L    GV V  +F T  AS +         L   LK+ +
Sbjct: 75  EVFADPGIVKVFHGAFMDVVWLQRDLGVYVVGLFDTHHASTVLGYGGG--SLAFLLKKFV 132

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           G    K  Q +DW    L  E L YA +D  +L  +       L   
Sbjct: 133 GFEADKRWQLADWRIRPLPAEMLYYARADTHYLLYVYDMIRNDLAAA 179


>gi|320093825|ref|ZP_08025670.1| ribonuclease D [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979258|gb|EFW10756.1| ribonuclease D [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 412

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 15/184 (8%)

Query: 10  DIPAEC------AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKN 62
           D PA+              +A+D E            +VQ+   D G+  I         
Sbjct: 32  DTPADLERAASRLRSGSAPVALDVERALGFRYGSDPYLVQIRREDVGSFLID-----SHA 86

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
            P+L  +        + H    D+  L    G+R   +F T+IA+RL      + GL   
Sbjct: 87  LPDLSPLNDGVGSTWLLHDCSQDLPNL-RAVGLRCPELFDTEIAARLVGM--RRFGLASV 143

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            + +LG+ + K  Q++DWS   L  + L+YAA DV  L  L  + + +L  LGR + AT 
Sbjct: 144 AESVLGLALVKDHQAADWSVRPLPKDWLRYAALDVELLTELHRRLSTRLHDLGRWEWATQ 203

Query: 183 CCNF 186
               
Sbjct: 204 EFAH 207


>gi|256832621|ref|YP_003161348.1| 3'-5' exonuclease [Jonesia denitrificans DSM 20603]
 gi|256686152|gb|ACV09045.1| 3'-5' exonuclease [Jonesia denitrificans DSM 20603]
          Length = 406

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 71/201 (35%), Gaps = 21/201 (10%)

Query: 3   TIRVHEGDIPAEC-------------AARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGD 48
            +  H  D PA+                R     AVD E        DR  ++Q+   G 
Sbjct: 11  PVLTHPQDGPADLVNTTVSYQAALRRLDRGHGPFAVDAERASGYRYGDRNYLIQVRREGA 70

Query: 49  GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
           GT  I   A    +   L  ++       IFH    D+  L    G+    +F T++A+R
Sbjct: 71  GTFLIDPTAV--DDFSELNAVMA--ADTWIFHAAIQDLGPL-RDQGLTPGTIFDTEVAAR 125

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           L     ++  L       LG+ + K     DWS   L    L YAA DV  L  L +  T
Sbjct: 126 LLG--LDRVNLAAVTAHFLGVTLEKQHSHQDWSTRPLPSSWLTYAALDVELLGDLAISET 183

Query: 169 EKLQRLGRSDLATSCCNFLMD 189
           + L    +   A     ++  
Sbjct: 184 DALTETRKLRWAHEEFAYIQA 204


>gi|225447009|ref|XP_002268685.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 936

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 5/164 (3%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           ++    + + V   AVDTE   L        ++Q+S  +    +  IA        L  +
Sbjct: 124 ELADVLSKQRV--FAVDTEQHSLRSFLGFTALIQISTQNEDYLVDTIAL-HDTLDVLQPV 180

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             +    K+FH    D+  L   F + V  +F T  A  +      Q  L   L+   G+
Sbjct: 181 FANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGV 238

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
             +K  Q  DW    LS E L+YA +D  +L  +      +L++
Sbjct: 239 ATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQ 282


>gi|320034794|gb|EFW16737.1| exosome complex exonuclease Rrp6 [Coccidioides posadasii str.
           Silveira]
          Length = 772

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 2/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    +  +   ++    L  +  D +  
Sbjct: 244 LKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVFADPRIL 303

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  AS        +  LK  L + + +   K  Q
Sbjct: 304 KVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNY--PKKSLKFLLDKFVNLEAEKQYQ 361

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           ++DW    L      YA SD  +L  +      +L   
Sbjct: 362 TADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELIEK 399


>gi|115896423|ref|XP_795972.2| PREDICTED: similar to G protein-coupled receptor
           [Strongylocentrotus purpuratus]
 gi|115925241|ref|XP_001183731.1| PREDICTED: similar to G protein-coupled receptor
           [Strongylocentrotus purpuratus]
          Length = 976

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 20/193 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVDEK 74
           R    I +D E + L   + RL +VQ+S  DG     D  +     K   +L   L  + 
Sbjct: 730 RETVVIGLDCEGVELGREKGRLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKTLEHDS 789

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS-----RLTRTYTNQHGLKDNLKELLGI 129
             K+ H    D   L++ FGV+++ VF T IA      +L R +  Q G K    ELLG 
Sbjct: 790 ILKVIHACNSDTYSLYHDFGVKLKNVFDTSIAMFTIMEQLNRNHPYQIGYKALC-ELLGE 848

Query: 130 NIS--------KAQQSSD-WSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDL 179
             S        K  ++ D W    L++E + YAASD + L   + L+    L R+ R DL
Sbjct: 849 AASHKDDDFKKKMIETEDFWKIRPLTEEMIYYAASDTLCLVPTVYLKLNGMLTRVWR-DL 907

Query: 180 ATSCCNFLMDRAE 192
            T  C   M+R +
Sbjct: 908 FTWSCKNAMERKQ 920


>gi|303310683|ref|XP_003065353.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105015|gb|EER23208.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 766

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 2/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    +  +   ++    L  +  D +  
Sbjct: 244 LKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVFADPRIL 303

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  AS        +  LK  L + + +   K  Q
Sbjct: 304 KVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNY--PKKSLKFLLDKFVNLEAEKQYQ 361

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           ++DW    L      YA SD  +L  +      +L   
Sbjct: 362 TADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELIEK 399


>gi|212715679|ref|ZP_03323807.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661046|gb|EEB21621.1| hypothetical protein BIFCAT_00579 [Bifidobacterium catenulatum DSM
           16992]
          Length = 431

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 8/175 (4%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLV 71
             A    ++A D E            +VQ    G G   +    + A   +  +    + 
Sbjct: 31  ALASSHGSLAADAERASGFRYGHDDWLVQFKRDGAGIGLLDPQALTAEGVDWNDFNAAVG 90

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D     I H    D+       G++ + +F T+IA+RL      + GL    +  LG+ +
Sbjct: 91  DA--VWILHDSLQDLPGF-NDLGLKPQRLFDTEIAARLLGM--KRFGLAAVTEHYLGLTL 145

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           +K   ++DWS   L  +   YAA DV  L  L      +L+R G+ + A    ++
Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETIMRAELRRQGKIEWAEEEFDY 200


>gi|302916517|ref|XP_003052069.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
           77-13-4]
 gi|256733008|gb|EEU46356.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
           77-13-4]
          Length = 833

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 2/171 (1%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           +  +EG +      +    IAVD E          + ++Q+S  +    +  +   +   
Sbjct: 226 VDTYEGVLEMLKELKKAKEIAVDLEHHDFRSYIGLVSLMQISTREKDWIVDTLQPWRHKL 285

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +  + K  K+FH    D+  L    G+ V  +F T  A            L   L
Sbjct: 286 EVLNEVFTNPKIIKVFHGAYMDMVWLQRDLGLYVNGLFDTFFACDQLHYPAK--SLAFLL 343

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            + +  +  K  Q +DW    + +E + YA SD  +L  +  +   +L   
Sbjct: 344 SKFVDFDADKQYQLADWRIRPIPEEMMYYARSDTHYLLYIYDKVRNELVAT 394


>gi|298252714|ref|ZP_06976508.1| ribonuclease D [Gardnerella vaginalis 5-1]
 gi|297533078|gb|EFH71962.1| ribonuclease D [Gardnerella vaginalis 5-1]
          Length = 476

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 8/179 (4%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLV 71
             A     +A D E            ++Q      G G +D I +     +       + 
Sbjct: 31  LLAAGSGPLAADAERASGFRYSHEDWLIQFKRKGAGIGLLDPIELTKLGADWNEFNKAVG 90

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D     I H    D+   F   G+R R +F T+IA++L      + GL    +  LG+ +
Sbjct: 91  D--VPWIIHDSMQDLPGFF-DIGLRPRALFDTEIAAKLLG--RKRFGLSSVTEYYLGLTL 145

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +K   ++DWS   L  +   YAA DV  L  L      +L++ G+   A      L+ +
Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMRVELKKQGKLSWAEEEFKHLLSK 204


>gi|119195137|ref|XP_001248172.1| hypothetical protein CIMG_01943 [Coccidioides immitis RS]
          Length = 766

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 2/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    +  +   ++    L  +  D +  
Sbjct: 244 LKSAKEIAVDLEHHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVFADPRIL 303

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  AS        +  LK  L + + +   K  Q
Sbjct: 304 KVLHGSSMDVIWLQRDLGLYLVGLFDTYHASVALNY--PKKSLKFLLDKFVNLEAEKQYQ 361

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           ++DW    L      YA SD  +L  +      +L   
Sbjct: 362 TADWRLRPLLPGMFDYARSDTHYLLYIYDNLRNELIEK 399


>gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40]
 gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40]
          Length = 703

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 47/230 (20%)

Query: 13  AECAARYVDAIAVDTETL------GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
            +    Y   + +D ET        L P   ++ +VQ++     + + R    +KN    
Sbjct: 2   DKDLLGYKKIVGIDIETWDGKKGGSLDPYSGKIALVQIAYDRNNIVLYRP--WEKNFEEA 59

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN----------- 115
           + +L D+   K+ H  +FD+   +    +   P+F T IAS++     +           
Sbjct: 60  LKVLSDKDVLKVGHNLKFDLKFFYMN-NIYPEPIFDTMIASQMIYAGLDEPDEISEVLEA 118

Query: 116 --------------------------QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
                                      H L+  LK  L I + K  Q+S+W   +LS+ Q
Sbjct: 119 LKDDLTTEEVAIFDVFGKKRTKATKFSHSLQAVLKRELNIFLPKDVQNSNWGG-ELSEAQ 177

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWE 199
            +YA +DV +L  L ++  +K++ L   ++      FL     L+L G +
Sbjct: 178 KEYAINDVKYLKDLSIELWKKIKALNIENVFMLEMKFLPVLVMLELTGVK 227


>gi|270012325|gb|EFA08773.1| hypothetical protein TcasGA2_TC006462 [Tribolium castaneum]
          Length = 421

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    + VD E       +   C+VQ+S  D    I  IA  +     L  +  +   
Sbjct: 88  DLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIAL-KDELHALNEVFTNPDI 145

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KIFH    D+  L    GV V  +F T+IA +       + GL   L++   +   K  
Sbjct: 146 VKIFHSAVNDLKWLQQDLGVFVVNLFDTQIAMKALGY--KKLGLDALLQDY-HVAKDKTM 202

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           Q  D+    L  +   YA  D  +L     +   +L            CN
Sbjct: 203 QRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCN 252


>gi|195451328|ref|XP_002072866.1| GK13832 [Drosophila willistoni]
 gi|194168951|gb|EDW83852.1| GK13832 [Drosophila willistoni]
          Length = 913

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 3/155 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              IA+D E           C+VQ+S       I      +++   L  ++ D K+ KI 
Sbjct: 303 ASQIAIDVEHHSYRTFMGITCLVQMSTCSKD-YIFDTLVLREDMQLLNLVMTDPKKLKIL 361

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    DI  L     + +  +F T  A++       +  L   LK  + +++ K+ Q +D
Sbjct: 362 HGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM--ARLSLAFLLKHYVDLDVDKSLQLAD 419

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           W    L  E + YA  D  +L  +    T  L +L
Sbjct: 420 WRMRPLPQELINYARQDTHYLIYVYQCLTNDLLKL 454


>gi|297243353|ref|ZP_06927286.1| ribonuclease D [Gardnerella vaginalis AMD]
 gi|296888600|gb|EFH27339.1| ribonuclease D [Gardnerella vaginalis AMD]
          Length = 476

 Score =  141 bits (356), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 8/179 (4%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLV 71
             A    ++A D E            ++Q      G G +D I +     +       + 
Sbjct: 31  LLASGSGSLAADAERASGFRYGHEDWLIQFKRKGAGIGLLDPIELTKLGADWNEFNKAVG 90

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D     I H    D+   F   G+R R +F T+IA++L      + GL    +  LG+ +
Sbjct: 91  D--VPWIIHDSMQDLPGFF-DIGLRPRALFDTEIAAKLLG--RKRFGLSSVTEYYLGLTL 145

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +K   ++DWS   L  +   YAA DV  L  L      +L++ G+   A      L+++
Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMRGELKKQGKLSWAEEEFKHLLNK 204


>gi|225352286|ref|ZP_03743309.1| hypothetical protein BIFPSEUDO_03902 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157533|gb|EEG70872.1| hypothetical protein BIFPSEUDO_03902 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 243

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 8/175 (4%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLV 71
             A    ++A D E            +VQ    G G   +    +AA   +  +    + 
Sbjct: 31  ALASSHGSLAADAERASGFRYGHDDWLVQFKRDGAGIGLLDPQALAAEGADWNDFNRAVG 90

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D     I H    D+       G++ + +F T+IA+RL      + GL    +  LG+ +
Sbjct: 91  DA--VWILHDSLQDLPGF-NDLGLKPQRLFDTEIAARLLGM--KRFGLAAVTEHYLGLTL 145

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           +K   ++DWS   L  +   YAA DV  L  L      +LQ+ G+ + A    ++
Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETTMRAELQKQGKIEWAEEEFDY 200


>gi|218184595|gb|EEC67022.1| hypothetical protein OsI_33743 [Oryza sativa Indica Group]
          Length = 854

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 21/175 (12%)

Query: 2   TTIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
            T   H  D+      A +   A    TE               +S       +  +   
Sbjct: 229 DTPFTHVEDLKSLEVLATKLKSA----TEFA-------------ISTRTEDFIVDTLKLR 271

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           +     L  +  D  ++K+ H    DI  L   FG+ V  +F T  ASR+     +++ L
Sbjct: 272 KYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRIL--QMDRNSL 329

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           +  L    G+  +K  QS+DW    L DE ++YA  D  +L  +      +L + 
Sbjct: 330 EHLLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKE 384


>gi|294865716|ref|XP_002764472.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
 gi|239863939|gb|EEQ97189.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
          Length = 703

 Score =  140 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 5/161 (3%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            T+ + +  +     AR    +A+D E   +   R   C++Q++       +  +A G  
Sbjct: 547 DTVELVDEMLDELAEARE---VAIDLEHHNMQSYRGFTCLIQIATRKKDYIVDVLAPGIM 603

Query: 62  N-APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
               +   +  D    K+ H    D+  L       +  +F T  A+R+       + LK
Sbjct: 604 MKMHDFNRITSDPGIVKVLHGADMDVQWLQRDLSAYLCNMFDTGQAARVLELGG-GYSLK 662

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
           + L    G    KA Q +DW    LS+   QYA  DV +L 
Sbjct: 663 NLLDFYCGYKADKANQLADWRQRPLSERMKQYARDDVHYLL 703


>gi|300781041|ref|ZP_07090895.1| ribonuclease D [Corynebacterium genitalium ATCC 33030]
 gi|300532748|gb|EFK53809.1| ribonuclease D [Corynebacterium genitalium ATCC 33030]
          Length = 394

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 69/179 (38%), Gaps = 6/179 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGML 70
            A+  A      AVDTE        DR  ++Q+   G GT         ++    L   +
Sbjct: 15  AAKQLAAGHGPFAVDTERASAYRYDDRAFLIQIHRRGAGTFLFQPEGLREELTSALAPAV 74

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
             E    I H    D+  L    G+    +F T +A R+      +  L   + E  G+ 
Sbjct: 75  NGED--WIIHAAPEDLPSL-AELGLHPGTLFDTALAGRIAG--FEKPNLAAMVAEFCGVE 129

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           + K     DWS   L  E L YAA DV++L  L     E L  LG+ D A      ++D
Sbjct: 130 LEKGHGREDWSLPTLPREWLDYAALDVIYLPDLAEAQAELLGGLGKLDYAEQEFAHIVD 188


>gi|189218664|ref|YP_001939305.1| Ribonuclease D [Methylacidiphilum infernorum V4]
 gi|189185522|gb|ACD82707.1| Ribonuclease D [Methylacidiphilum infernorum V4]
          Length = 324

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
           V L  G     +      + +   L  +L   + E I H   +D+ +L      + R +F
Sbjct: 2   VSLCQGQHLAVVD---CLKDDLSALWDILS--RSEWICHGMDYDLKMLRKAGCPQPRTIF 56

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
            T IA++L        G    +     + ++K  Q +DWS   L    + Y A DV++L 
Sbjct: 57  DTHIAAKLCG--FEAVGYARLVSLFFQVKLTKEHQKADWSRRPLPPSLINYTAKDVLYLE 114

Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG----WENVD 202
            L+   T  L+ LGR +     C  +  + E   LG    WE ++
Sbjct: 115 KLKEILTRLLKSLGRWEWMEQSCKRIQRKIENSFLGSPKEWERIE 159


>gi|294786964|ref|ZP_06752218.1| HRDC:3-5 exonuclease [Parascardovia denticolens F0305]
 gi|315226603|ref|ZP_07868391.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|294485797|gb|EFG33431.1| HRDC:3-5 exonuclease [Parascardovia denticolens F0305]
 gi|315120735|gb|EFT83867.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 432

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 8/177 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKR 75
               IAVD E         +  ++Q    G G   I  +A  +   +  ++     D   
Sbjct: 38  ASGPIAVDAERASGYRYSQQDWLIQFKREGAGIALIDPVALSEQEMDWQDVNEAFGDA-- 95

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
             I H    D+   ++  G++   +F T+ A+RL      + GL    +  L + ++K  
Sbjct: 96  VWIMHDSSQDLPG-YFDLGLKPAGLFDTERAARLLGQ--VRFGLAAVTERYLDLTLAKEH 152

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            ++DWS   L  +   YAA DV  L  L     + L++ G+ D A     +L+++ +
Sbjct: 153 SAADWSYRPLDRDMRIYAALDVEVLIELEGLMKKDLKKAGKWDWAQEDFIYLLNKGK 209


>gi|261206146|ref|XP_002627810.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
           SLH14081]
 gi|239592869|gb|EEQ75450.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
           SLH14081]
          Length = 814

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E          +C++Q+S  +    +  +   ++    L  +  D K  
Sbjct: 245 LKQTTEIAIDLEHHDTHSYHGLVCLMQISTREKDWIVDTLKPWREELQILNEVFADPKII 304

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+ +   Y  +  LK  L++ +     K  Q
Sbjct: 305 KVLHGSTMDVIWLQRDLGLYLVGLFDTYHAA-VALNYPKR-SLKFLLEKFVNFQAEKKYQ 362

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    L      YA SD  +L  +  Q    L  
Sbjct: 363 MADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNSLVE 399


>gi|68536154|ref|YP_250859.1| hypothetical protein jk1077 [Corynebacterium jeikeium K411]
 gi|260578851|ref|ZP_05846757.1| ribonuclease D (RNase D) [Corynebacterium jeikeium ATCC 43734]
 gi|68263753|emb|CAI37241.1| rnd [Corynebacterium jeikeium K411]
 gi|258602998|gb|EEW16269.1| ribonuclease D (RNase D) [Corynebacterium jeikeium ATCC 43734]
          Length = 423

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 84/203 (41%), Gaps = 8/203 (3%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNA 63
              + D  +   A     IA+DTE        DR  ++QL   G GT  I   A  Q  A
Sbjct: 17  TPQQIDAVSRVLAAGTGPIAIDTERASAYRYDDRAFLIQLRRHGSGTFLIDPEAEPQ--A 74

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
              +  +V+E  E + H    D+  L    G R + +  T+IA +L      + GL   L
Sbjct: 75  TRRMAEVVNEA-EWVLHAAHTDLPCLM-ALGWRPQVLHDTQIAGQLLGA--ERIGLSGML 130

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
                I + K + ++DWS   L+   L YAA DV  L  L     E+L + GR++     
Sbjct: 131 DAYFDIQVPKDKGNADWSRRPLTQAMLNYAALDVEWLLELLDCCLEELAKTGRTEWYIQE 190

Query: 184 CNFLMDRAE-LDLLGWENVDIFS 205
           C  ++  A  L    W ++   S
Sbjct: 191 CQHVLASASPLSANDWTDLKGLS 213


>gi|239610958|gb|EEQ87945.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ER-3]
 gi|327351664|gb|EGE80521.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 814

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E          +C++Q+S  +    +  +   ++    L  +  D K  
Sbjct: 245 LKQTTEIAIDLEHHDTHSYHGLVCLMQISTREKDWIVDTLKPWREELQILNEVFADPKII 304

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+ +   Y  +  LK  L++ +     K  Q
Sbjct: 305 KVLHGSTMDVIWLQRDLGLYLVGLFDTYHAA-VALNYPKR-SLKFLLEKFVNFQAEKKYQ 362

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    L      YA SD  +L  +  Q    L  
Sbjct: 363 MADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNSLVE 399


>gi|194900862|ref|XP_001979974.1| GG21034 [Drosophila erecta]
 gi|190651677|gb|EDV48932.1| GG21034 [Drosophila erecta]
          Length = 900

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IA+D E           C+VQ+S       I      +++   L  +L D K+ 
Sbjct: 287 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILREDMHILNLVLTDPKKL 345

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI  L     + +  +F T  A++       +  L   LK  L +++ K+ Q
Sbjct: 346 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALN--LARLSLAYLLKYYLDLDVDKSLQ 403

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    L  + + YA  D   L  +  + T  L + 
Sbjct: 404 LADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLQQ 441


>gi|194743298|ref|XP_001954137.1| GF18126 [Drosophila ananassae]
 gi|190627174|gb|EDV42698.1| GF18126 [Drosophila ananassae]
          Length = 909

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IA+D E           C+VQ+S       I      +     L  +L D K+ 
Sbjct: 299 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDEMHILNLVLTDPKKL 357

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KI H    DI  L     + +  +F T  A++       +  L   LK  + +++ K+ Q
Sbjct: 358 KILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALN--LARLSLAFLLKHYIDLDVDKSLQ 415

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +DW    L  + + YA  D   L  +  + T  L   
Sbjct: 416 LADWRMRPLPQQLVDYARQDTHFLIYVYERMTNDLLEQ 453


>gi|146421793|ref|XP_001486840.1| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 755

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 61/170 (35%), Gaps = 4/170 (2%)

Query: 7   HEGDIPA-ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            E D+            IAVD E          +C++Q+S  +    II     + +   
Sbjct: 230 TESDLSQMVSDLSSQTEIAVDLEHHDYRSYLGIVCLMQISSREKD-WIIDTLKLRDSLVV 288

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +  +    K+FH    DI  L    G+ V  +F T  AS+       +  L   L+ 
Sbjct: 289 LNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASKKLG--LPRFSLAYLLEN 346

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
                 SK  Q +DW    L    L YA SD   L  +  Q   +L   G
Sbjct: 347 YANFKTSKKYQLADWRMRPLLGPMLSYARSDTHFLLYVYDQLRNQLLSSG 396


>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 575

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 26/211 (12%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I   EG +  +        + +DTET G     DRL +VQL        +     G++  
Sbjct: 6   ITSPEGLLKVKEKLSPEAVLFLDTETTG-----DRLRLVQLGGQGEIFLLDLFELGERGV 60

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L  +L  +    + H  +FD+  L+    +    VF T +AS+L     ++H L+   
Sbjct: 61  LFLKELLSQKGV--VGHNLKFDLKYLYRYH-IEPYAVFDTMVASQLL-AELDRHSLQSVA 116

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ----------- 172
              LG  + K+ Q SDW +  L+  QL+YAA DVV +  L     EKL            
Sbjct: 117 MHYLGQVLDKSLQLSDWGSRVLTKAQLEYAALDVVVVRDLFPILLEKLNQCPVREEILLK 176

Query: 173 -RLGR-----SDLATSCCNFLMDRAELDLLG 197
            R  R     + +A     F+ + A+L+L G
Sbjct: 177 TRTSRVFGLQNPVAIVEMAFVQEVAKLELNG 207


>gi|293608164|ref|ZP_06690467.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828737|gb|EFF87099.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 374

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE + +     +L + Q++  +G V ++        +     + + ++   IFH   
Sbjct: 25  GLDTEFIKVDTLWPKLGVCQVNV-NGDVYLLD-GVSLDLSQFWKKIFLAQQ--NIFHACG 80

Query: 84  FDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            DI ++++      +  VF T++       +  Q   +  LK  L I+I K Q  SDW A
Sbjct: 81  EDIDLIYHYADQEDLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLDIDIEKDQTRSDWLA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             LS +QL YAA+DV++L  L     E+L++ G  +     C+ L 
Sbjct: 140 RPLSPQQLCYAANDVLYLMKLAHHIQEQLKQKGLYNYVLEDCSSLT 185


>gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 550

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85
           D ET GL    DR+C VQL+ G+  V ++++  G      L  +L D+   KIFH  RFD
Sbjct: 380 DIETTGLNWYADRICTVQLACGN-RVAVVQLPEGHTPQ-RLSQILGDQNILKIFHNARFD 437

Query: 86  IAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLKELLGINISKAQQSSDWSADD 144
           +  + Y + V  + V CT    RL        H L++ L+  L + I K Q  SDW+   
Sbjct: 438 LRFMVYHWSVIPQNVACTLELVRLLNPRERAGHTLREVLERYLAVQIIKDQTCSDWTTAQ 497

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           L+ EQ++YA +DV +L  L         R  R + A 
Sbjct: 498 LTQEQIRYATNDVRYLPVLFDLLMNM-ARERRLEEAA 533


>gi|325122106|gb|ADY81629.1| ribonuclease D, processes tRNA [Acinetobacter calcoaceticus PHEA-2]
          Length = 374

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE + +     +L + Q++  +G V ++        +     + + ++   IFH   
Sbjct: 25  GLDTEFIKVDTLWPKLGVCQVNV-NGDVYLLD-GVSLDLSQFWKKIFLAQQ--NIFHACG 80

Query: 84  FDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            DI ++++      +  VF T++       +  Q   +  LK  L I+I K Q  SDW A
Sbjct: 81  EDIDLIYHYADQEDLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLDIDIEKDQTRSDWLA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             LS +QL YAA+DV++L  L     E+L++ G  +     C+ L 
Sbjct: 140 RPLSPQQLCYAANDVLYLMKLAHHIQEQLKQKGLYNYVLEDCSSLT 185


>gi|291456557|ref|ZP_06595947.1| ribonuclease D [Bifidobacterium breve DSM 20213]
 gi|291381834|gb|EFE89352.1| ribonuclease D [Bifidobacterium breve DSM 20213]
          Length = 433

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 8/174 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQK--NAPNLVGML 70
           E  A    ++A D E            ++Q    G G   +  IA  Q   +       +
Sbjct: 34  EALADASGSLAADAERASGFRYGHEDWLIQCKREGAGIALLDPIALTQSGADWNEFNEAV 93

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+       G++ + +F T+IA+RL   +  + GL    +  LGI 
Sbjct: 94  GDA--TWILHDSLMDLPGF-ADLGLQPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ++K   ++DWS   L  +   YAA DV  L  L       L+  G+ + A    
Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELENLMRRDLRAAGKDEWAEEEF 202


>gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 176

 Score =  139 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 4/165 (2%)

Query: 10  DIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           D   E AA        AVD E       +   C++Q+S  +    +  +A        L 
Sbjct: 14  DALEELAAHLEECKEFAVDLEHHSYRSFKGFTCLMQISTRERDFVVDVLALRSHVRDALG 73

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
               D  + K+ H    D+  L   FG+ V  +F T  A+R+        GL   L    
Sbjct: 74  KAFADADKLKVMHGADNDVQWLQKDFGMFVSCLFDTGQAARVLE--LPSKGLAYLLHHYC 131

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           GI  +K  Q +DW    L+ E ++YA  D  HL  +  +  E L+
Sbjct: 132 GIKANKRFQLADWRLRPLTKEMVEYARGDTHHLLYVHDRLKEALR 176


>gi|308234712|ref|ZP_07665449.1| ribonuclease D [Gardnerella vaginalis ATCC 14018]
 gi|311114520|ref|YP_003985741.1| hypothetical protein HMPREF0421_20636 [Gardnerella vaginalis ATCC
           14019]
 gi|310946014|gb|ADP38718.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 481

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 8/180 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQK--NAPNLVGML 70
              A     +A D E            ++Q    G G   +  IA G+   +       +
Sbjct: 54  NLLAAGSGPLAADAERASGFRYGHEDWLIQFKRKGAGIGLLDPIALGKLGVDWHEFNEAV 113

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+   F   G+R R +F T+IA++L      + GL    +  LG+ 
Sbjct: 114 GDAP--WIIHDSMQDLPGFF-DIGLRPRALFDTEIAAKLLG--RKRFGLSSVTEYYLGLT 168

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++K   ++DWS   L  +   YAA DV  L  L    + +L++ G+   A      L+ +
Sbjct: 169 LAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMSGELKKQGKLLWANQEFAHLLSK 228


>gi|325088958|gb|EGC42268.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H88]
          Length = 807

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            + V  IA+D E          +C++Q+S  D    +  +   ++    L  +  D K  
Sbjct: 245 LKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFSDPKIL 304

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+        +  LK  L++       K  Q
Sbjct: 305 KVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNY--PKKSLKFLLEKFANFQAEKKYQ 362

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    L      YA SD  +L  +  Q    L  
Sbjct: 363 IADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNDLIE 399


>gi|225560671|gb|EEH08952.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus G186AR]
          Length = 807

 Score =  138 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            + V  IA+D E          +C++Q+S  D    +  +   ++    L  +  D K  
Sbjct: 245 LKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFSDPKIL 304

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+        +  LK  L++       K  Q
Sbjct: 305 KVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNY--PKKSLKFLLEKFANFQAEKKYQ 362

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    L      YA SD  +L  +  Q    L  
Sbjct: 363 IADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNDLIE 399


>gi|289676535|ref|ZP_06497425.1| ribonuclease D [Pseudomonas syringae pv. syringae FF5]
          Length = 142

 Score =  138 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 4/135 (2%)

Query: 8   EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +  +   CA  + +  +A+DTE + +        ++Q+  G     I  +     +   L
Sbjct: 11  DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDPLLIN--DWRPL 68

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    K+ H    D+ VL    G    P+F T++A+          G    ++E+
Sbjct: 69  SALLENRDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSRLVQEV 127

Query: 127 LGINISKAQQSSDWS 141
           L I++ K +  SDW 
Sbjct: 128 LDIDLPKGETRSDWL 142


>gi|262193925|ref|YP_003265134.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
 gi|262077272|gb|ACY13241.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
          Length = 925

 Score =  138 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 71/162 (43%), Gaps = 10/162 (6%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           A  A      + +D ET       DR LC+VQL+  + TV I   A    +   +  +L 
Sbjct: 768 ACAALLGEPRVGLDVET----TLFDRALCLVQLAAPEYTVVID--ARAVDDLGPVSELLA 821

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGI 129
                KI H  +F+   +F   G+ +  VF T   SR  R       HGL       LG 
Sbjct: 822 SRAVVKIIHNAQFE-RSVFRKLGMDIENVFDTLKVSRRLRGRKREGGHGLGAVCARELGR 880

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            + K +Q SDW+   L+  QL YAA D   L AL  +FT +L
Sbjct: 881 ELDKHEQRSDWTQRPLTQRQLDYAALDAEVLLALHERFTREL 922


>gi|330955621|gb|EGH55881.1| ribonuclease D [Pseudomonas syringae Cit 7]
          Length = 235

 Score =  138 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +   L  +L +    K+ H    D+ VL    G    P+F T++A+          G   
Sbjct: 5   DWRPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLN-LGFSMGYSR 63

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            ++E+L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 64  LVQEVLDIDLPKGETRSDWLERPLSETQISYAAEDAVHLAELFTILRPRL 113


>gi|85000709|ref|XP_955073.1| 3'-5' exonuclease [Theileria annulata strain Ankara]
 gi|65303219|emb|CAI75597.1| 3'-5' exonuclease, putative [Theileria annulata]
          Length = 790

 Score =  138 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 15/187 (8%)

Query: 7   HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +E D  A     +    +++D E       R  +C++QLS       I       K    
Sbjct: 482 NESDFNAMLDKLKNSRILSMDVEHHDTETYRGFICLLQLSTPQENYIIDPFKIFGKMN-K 540

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +  D K  KI H    D+  L   F + V  +F T+ A+ +      +  L   +++
Sbjct: 541 LNRLTTDPKILKIMHGACNDVIWLQRDFNIFVVNLFDTREAAIVLN--LPEQSLAKLVQK 598

Query: 126 LLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVHLHALRLQFTEKL--QRL 174
              I ++K  Q S+WS            L DE L YA  D  +L  L     +++  +  
Sbjct: 599 YFNIKLNKRFQISNWSKSYNCLNCGIRPLDDEMLDYACCDSHYLIPLYNTLKDEILSKED 658

Query: 175 GRSDLAT 181
           GR  +  
Sbjct: 659 GRVKIIQ 665


>gi|299770307|ref|YP_003732333.1| ribonuclease D [Acinetobacter sp. DR1]
 gi|298700395|gb|ADI90960.1| ribonuclease D [Acinetobacter sp. DR1]
          Length = 374

 Score =  138 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 7/190 (3%)

Query: 1   MTTIRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           M      + D+              +DTE + +     +L + Q++  +G V ++     
Sbjct: 1   MFQFIQQQTDLVDVLQKMDQCSIYGLDTEFIKVDTLWPKLGVCQVNV-NGDVYLLD-GVS 58

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHG 118
              +     + + ++   IFH    DI ++++      +  VF T++       +  Q  
Sbjct: 59  LDLSQFWKKIFLAQQ--NIFHACGEDIDLIYHYADQEDLLNVFDTQVGLSFL-GHGLQVS 115

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            +  LK  L I+I K Q  SDW A  LS +QL YAA+DV+++  L     E+L++ G  D
Sbjct: 116 YQGALKLCLDIDIEKDQTRSDWLARPLSPQQLCYAANDVLYIMKLAHHIQEQLKQKGLYD 175

Query: 179 LATSCCNFLM 188
                C+ L 
Sbjct: 176 YVLEDCSSLT 185


>gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 584

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 24/203 (11%)

Query: 16  AARYVDAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A +    + +DTE        +    D++ ++Q+               Q  + +L  +L
Sbjct: 18  AFKEDKYLFIDTEVAVKSFEDIDFFNDKIRLIQIGNYSKIFVYDMFRIPQ-FSEHLKELL 76

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGI 129
            ++    I H  +FDI  L   FG+  + VF T IAS+L    +  +H L      L   
Sbjct: 77  ENKGV--IGHNLKFDIKFLKTNFGIFPQIVFDTMIASQLLSEDSREKHSLSALSYRLTDN 134

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR-------LGRSD---- 178
           ++ K+QQ S W   +L++EQL+YAA DV  L  +     ++L R        G+      
Sbjct: 135 HLDKSQQRSPWGIKNLTEEQLRYAAKDVQVLREIFPVLRDELNRIETPHKATGKIHETFG 194

Query: 179 ----LATSCCNFLMDRAELDLLG 197
               +A     F+   A+++L G
Sbjct: 195 LDNGVAVVEMAFVPQLADIELRG 217


>gi|91088803|ref|XP_968984.1| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
          Length = 377

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 5/170 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    + VD E       +   C+VQ+S  D    I  IA  +     L  +  +   
Sbjct: 88  DLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIAL-KDELHALNEVFTNPDI 145

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KIFH    D+  L    GV V  +F T+IA +       + GL   L++   +   K  
Sbjct: 146 VKIFHSAVNDLKWLQQDLGVFVVNLFDTQIAMKALGY--KKLGLDALLQDY-HVAKDKTM 202

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           Q  D+    L  +   YA  D  +L     +   +L            CN
Sbjct: 203 QRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCN 252


>gi|262279001|ref|ZP_06056786.1| ribonuclease D [Acinetobacter calcoaceticus RUH2202]
 gi|262259352|gb|EEY78085.1| ribonuclease D [Acinetobacter calcoaceticus RUH2202]
          Length = 374

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE + +     +L + Q++  +G V ++        +     + V ++   IFH   
Sbjct: 25  GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSQFWKKIFVAQQ--NIFHACG 80

Query: 84  FDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            DI ++++      +  VF T++       +  Q   +  LK  L I+I K Q  SDW A
Sbjct: 81  EDIDLIYHYADQEDLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLDIDIEKDQTRSDWLA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             LS +QL YAA+DV+++  L     E+L++ G  D     C+ L 
Sbjct: 140 RPLSPQQLCYAANDVLYIMKLAHHIQEQLKQKGLYDYVLEDCSSLT 185


>gi|283783345|ref|YP_003374099.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05]
 gi|283441638|gb|ADB14104.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05]
          Length = 476

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 8/179 (4%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLV 71
                   +A D E            ++Q      G G +D I +     +       + 
Sbjct: 31  LLEAGSGPLAADAERASGFRYSHEDWLIQFKRKGAGIGLLDPIELTKLGADWNEFNKAVG 90

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D     I H    D+   F   G+R   +F T+IA++L      + GL    +  LG+ +
Sbjct: 91  D--VPWIIHDSMQDLPGFFN-IGLRPLALFDTEIAAKLLG--RKRFGLSSVTEYYLGLTL 145

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +K   ++DWS   L  +   YAA DV  L  L      +L++ G+   A      L+ +
Sbjct: 146 AKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMRVELKKQGKLSWAEEEFKHLLSK 204


>gi|154278361|ref|XP_001539994.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413579|gb|EDN08962.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 807

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            + V  IA+D E          +C++QLS  D    +  +   ++    L  +  D K  
Sbjct: 245 LKEVTEIAIDLEHHDAHSYHGLVCLMQLSTRDKDWIVDTLKPWREELQVLNEVFSDPKIL 304

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+        +  LK  L++ +     K  Q
Sbjct: 305 KVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNY--PKKSLKFLLEKFVNFQAEKKYQ 362

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    L      YA SD  +L  +       L  
Sbjct: 363 IADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNDLIE 399


>gi|193077320|gb|ABO12113.2| ribonuclease D [Acinetobacter baumannii ATCC 17978]
          Length = 374

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE + +     +L + Q++  +G V ++        +     + + ++   IFH   
Sbjct: 25  GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFLAQQ--NIFHACG 80

Query: 84  FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            DI ++++      +  VF T++       +  Q   +  LK  L I+I K Q  SDW A
Sbjct: 81  EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             LS +QL YAA+DV++L  L     ++L++ G  +     C+ L 
Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185


>gi|116670217|ref|YP_831150.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
 gi|116610326|gb|ABK03050.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
          Length = 449

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 12/180 (6%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71
           A   A       VD E         R  +VQ+   G GT  I     G         ++ 
Sbjct: 58  AAAIAAGTGPAGVDAERASGFRYGQRAFLVQIRREGSGTWLIDPEPFGDL------QIIN 111

Query: 72  D--EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           D  E  E I H    D+  L    G+    +F T++A+RL      + GL   +++LLG 
Sbjct: 112 DALEGVEWILHAASQDLPCLS-ELGMWPDKLFDTELAARLAG--LPRVGLAAVIEQLLGF 168

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            ++K   ++DWS   L +  L+YAA DV  L  LR +  E LQ  G+ + A      ++ 
Sbjct: 169 GLAKEHSAADWSTRPLPEPWLRYAALDVEVLTELREELIELLQGDGKLEYAEQEFAAILA 228


>gi|239501841|ref|ZP_04661151.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AB900]
 gi|332851689|ref|ZP_08433614.1| putative ribonuclease D [Acinetobacter baumannii 6013150]
 gi|332865936|ref|ZP_08436716.1| putative ribonuclease D [Acinetobacter baumannii 6013113]
 gi|332729696|gb|EGJ61031.1| putative ribonuclease D [Acinetobacter baumannii 6013150]
 gi|332734986|gb|EGJ66072.1| putative ribonuclease D [Acinetobacter baumannii 6013113]
          Length = 374

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE + +     +L + Q++  +G V ++        +     + + ++   IFH   
Sbjct: 25  GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFLAQQ--NIFHACG 80

Query: 84  FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            DI ++++      +  VF T++       +  Q   +  LK  L I+I K Q  SDW A
Sbjct: 81  EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             LS +QL YAA+DV++L  L     ++L++ G  +     C+ L 
Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185


>gi|295659299|ref|XP_002790208.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226281913|gb|EEH37479.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 827

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +      +C++Q+S  +    +  +   ++    L  +  D K  
Sbjct: 244 LKEATEIAIDLEHHDVHSYHGLVCLMQISTREQDWIVDTLKPWREELQVLNEVFTDPKIL 303

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ +  +F T   S +   Y  +  LK  L++ +     K  Q
Sbjct: 304 KVLHGSTMDIIWLQRDLGLYIVGLFDTYHGS-VALNYPKR-SLKFLLEKFVNFKAEKKYQ 361

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    L      YA SD  +L  +       L  
Sbjct: 362 MADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNSLVE 398


>gi|184158040|ref|YP_001846379.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ACICU]
 gi|332874500|ref|ZP_08442403.1| putative ribonuclease D [Acinetobacter baumannii 6014059]
 gi|183209634|gb|ACC57032.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ACICU]
 gi|322508359|gb|ADX03813.1| Ribonuclease D, processes tRNA [Acinetobacter baumannii 1656-2]
 gi|323517981|gb|ADX92362.1| ribonuclease D, processes tRNA [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737344|gb|EGJ68268.1| putative ribonuclease D [Acinetobacter baumannii 6014059]
          Length = 374

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE + +     +L + Q++  +G V ++        +     + + ++   IFH   
Sbjct: 25  GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFLAQQ--NIFHACG 80

Query: 84  FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            DI ++++      +  VF T++       +  Q   +  LK  L I+I K Q  SDW A
Sbjct: 81  EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             LS +QL YAA+DV++L  L     ++L++ G  +     C+ L 
Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185


>gi|226288046|gb|EEH43559.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 826

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +      +C++Q+S  D    +  +   ++    L  +  D K  
Sbjct: 244 LKEATEIAIDLEHHDVHSYHGLVCLMQISTRDQDWIVDTLKPWREELQVLNEVFTDPKIL 303

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ +  +F T   S +   Y  +  LK  L++ +     K  Q
Sbjct: 304 KVLHGSTMDIIWLQRDLGLYIVGLFDTYHGS-VALNYPKR-SLKFLLEKFVNFKAEKIYQ 361

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    L      YA SD  +L  +       L  
Sbjct: 362 MADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNSLVE 398


>gi|213408214|ref|XP_002174878.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002925|gb|EEB08585.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
           yFS275]
          Length = 782

 Score =  137 bits (347), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 4/161 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IAVD E          +C++Q+S  +    I+     ++    L  +  D K  
Sbjct: 233 LKQATEIAVDLEHHDYRSYSGFVCLMQISTRNQD-WIVDTLELREELECLNIVFTDPKII 291

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L   FG+ +  +F T  A++        HGL   LK+       K  Q
Sbjct: 292 KVLHGATMDVIWLQRDFGLYLVGLFDTYYATKALG--FEGHGLAFLLKKYCQFEADKRYQ 349

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFT-EKLQRLGR 176
            +DW    L  E L+YA SD   L  +      E L++  R
Sbjct: 350 MADWRIRPLPKEMLKYAQSDTHFLLYVFDCLRVELLEQSSR 390


>gi|260554178|ref|ZP_05826436.1| ribonuclease D(RNase D) [Acinetobacter sp. RUH2624]
 gi|260404684|gb|EEW98196.1| ribonuclease D(RNase D) [Acinetobacter sp. RUH2624]
          Length = 374

 Score =  137 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE + +     +L + Q++  +G V ++        +     + V ++   IFH   
Sbjct: 25  GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFVAQQ--NIFHACG 80

Query: 84  FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            DI ++++      +  VF T++       +  Q   +  LK  L I+I K Q  SDW A
Sbjct: 81  EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             LS +QL YAA+DV++L  L     ++L++ G  +     C  L 
Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYECVLEDCRSLT 185


>gi|225679037|gb|EEH17321.1| exosome component 10 [Paracoccidioides brasiliensis Pb03]
          Length = 827

 Score =  137 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    IA+D E   +      +C++Q+S  D    +  +   ++    L  +  D K  
Sbjct: 244 LKEATEIAIDLEHHDVHSYHGLVCLMQISTRDQDWIVDTLKPWREELQVLNEVFTDPKIL 303

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    DI  L    G+ +  +F T   S +   Y  +  LK  L++ +     K  Q
Sbjct: 304 KVLHGSTMDIIWLQRDLGLYIVGLFDTYHGS-VALNYPKR-SLKFLLEKFVNFKAEKIYQ 361

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    L      YA SD  +L  +       L  
Sbjct: 362 MADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNSLVE 398


>gi|164655640|ref|XP_001728949.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
 gi|159102837|gb|EDP41735.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
          Length = 849

 Score =  137 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 64/178 (35%), Gaps = 5/178 (2%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLV 67
            +        V  IAVD E       +  +C++Q+S   GD  VD + +   +++A  L 
Sbjct: 258 QLQKHLEEERVTEIAVDLEHHNQRSYQGIVCLMQISTRWGDWIVDTL-VDEVRESAELLN 316

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
                  +  + H    DI  L    G+ V  +F T  A+R  +       L   L    
Sbjct: 317 TAFTHPDKVLVLHGADHDILWLQRDLGLYVTNLFDTFQAARALQFGA--LSLAFLLLRYT 374

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
                K  Q++DW    L  E L YA SD   L  +      +L + G         +
Sbjct: 375 NFEADKRFQTADWRIRPLPREMLFYARSDTHALLYVYDCLRNELLQRGGPLAVKEVFD 432


>gi|325963026|ref|YP_004240932.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469113|gb|ADX72798.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3]
          Length = 444

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 8/178 (4%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71
           A   A       VD E         R  +VQ+   G GT  I       +N   +   L 
Sbjct: 58  AAAIAAGTGPAGVDAERASGFRYGQRAFLVQIRREGAGTWLIDP--EPFENLDIINEALR 115

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
               E I H    D+  L    G+    +F T++A+RL      + GL   +++LLG  +
Sbjct: 116 --GVEWILHAASQDLPCLS-ELGMWPDKLFDTELAARLAG--LPRVGLAAVIEQLLGFGL 170

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +K   ++DWS   L +  L+YAA DV  L  LR +  E LQ  G+ + A      ++ 
Sbjct: 171 AKEHSAADWSTRPLPEPWLRYAALDVEVLTELREELIELLQADGKLEYAEQEFAAILA 228


>gi|294943277|ref|XP_002783816.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
 gi|239896568|gb|EER15612.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
          Length = 350

 Score =  137 bits (346), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 2/141 (1%)

Query: 32  LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-APNLVGMLVDEKREKIFHYGRFDIAVLF 90
           +   R   C++Q++       +  +A G      +   +  D    K+ H    D+  L 
Sbjct: 1   MQSYRGFTCLIQIATRKKDYIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQ 60

Query: 91  YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL 150
                 +  +F T  A+R+       + LK+ L    G    KA Q +DW    LS+   
Sbjct: 61  RDLSAYLCNMFDTGQAARVLELGG-GYSLKNLLDFYCGYKADKANQLADWRQRPLSERMK 119

Query: 151 QYAASDVVHLHALRLQFTEKL 171
           QYA  DV +L  +  +   +L
Sbjct: 120 QYARDDVHYLLYIYDRMRAQL 140


>gi|240280781|gb|EER44285.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H143]
          Length = 671

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 2/157 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            + V  IA+D E          +C++Q+S  D    +  +   ++    L  +  D K  
Sbjct: 245 LKEVTEIAIDLEHHDAHSYHGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFSDPKIL 304

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+ H    D+  L    G+ +  +F T  A+        +  LK  L++       K  Q
Sbjct: 305 KVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNY--PKKSLKFLLEKFANFQAEKKYQ 362

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +DW    L      YA SD  +L  +  Q    L  
Sbjct: 363 IADWRLRPLLPGMFDYARSDTHYLLYIYDQIRNDLIE 399


>gi|169796039|ref|YP_001713832.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AYE]
 gi|213157227|ref|YP_002319272.1| ribonuclease D [Acinetobacter baumannii AB0057]
 gi|215483497|ref|YP_002325714.1| Ribonuclease D(RNase D) [Acinetobacter baumannii AB307-0294]
 gi|301345593|ref|ZP_07226334.1| ribonuclease D [Acinetobacter baumannii AB056]
 gi|301510304|ref|ZP_07235541.1| ribonuclease D [Acinetobacter baumannii AB058]
 gi|301597268|ref|ZP_07242276.1| ribonuclease D [Acinetobacter baumannii AB059]
 gi|169148966|emb|CAM86843.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AYE]
 gi|213056387|gb|ACJ41289.1| ribonuclease D [Acinetobacter baumannii AB0057]
 gi|213988267|gb|ACJ58566.1| Ribonuclease D(RNase D) [Acinetobacter baumannii AB307-0294]
          Length = 374

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE + +     +L + Q++  +G V ++        +     + + ++   IFH   
Sbjct: 25  GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSKFWKKIFLAQQ--NIFHACG 80

Query: 84  FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            DI ++++      +  VF T++       +  Q   +  LK  L I+I K Q  SDW A
Sbjct: 81  EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             LS +QL YAA+DV++L  L     ++L++ G  +     C+ L 
Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185


>gi|330926290|ref|XP_003301407.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
 gi|311323973|gb|EFQ90519.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
          Length = 796

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 10  DIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           D P   AA     +    IA+D E          +C++Q+S  D    +  +   ++   
Sbjct: 219 DTPEALAAMLAELKTAKEIAIDLEHHDNRTYIGMVCLMQISTRDKDWIVDTLKPWRRKLE 278

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  D    K+ H    DI  L    G+ +  +F T  A+R          L   L+
Sbjct: 279 CLNEVFADPSILKVLHGAFMDIIWLQRDLGLYIVGLFDTFHAARALGYQA--ASLAYLLE 336

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             +     K  Q +DW    LS E  +YA +D   L  +      +L
Sbjct: 337 LHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYIFDNMRNEL 383


>gi|189194651|ref|XP_001933664.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979228|gb|EDU45854.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 786

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 10  DIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           D P   AA     +    IA+D E          +C++Q+S  D    +  +   ++   
Sbjct: 209 DTPEALAAMLAELKTAKEIAIDLEHHDNRTYIGMVCLMQISTRDKDWIVDTLKPWRRKLE 268

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  D    K+ H    DI  L    G+ +  +F T  A+R          L   L+
Sbjct: 269 CLNEVFADPSILKVLHGAFMDIVWLQRDLGLYIVGLFDTFHAARALGYQA--ASLAYLLE 326

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             +     K  Q +DW    LS E  +YA +D   L  +      +L
Sbjct: 327 LHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYIFDNMRNEL 373


>gi|300932462|ref|ZP_07147718.1| hypothetical protein CresD4_00200 [Corynebacterium resistens DSM
           45100]
          Length = 429

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 78/197 (39%), Gaps = 7/197 (3%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNL 66
           E D+           IA+DTE   +    DR  ++QL   G GT  +       K     
Sbjct: 7   ELDVALNALREGSGPIAIDTERAAMYRFDDRAYLIQLRREGAGTFIVDPTGHPAKLREWQ 66

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +     + H    D+  L    G +   +  T+IA+RL   +         L+E 
Sbjct: 67  DALLAETP--WLLHAAHTDLPALL-ALGWQPSVLLDTQIAARLLGCHRLGL--SLLLEEF 121

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           L I+I K + ++DWS   L +  L YAA DV +L  +     ++L  L R D     C  
Sbjct: 122 LSISIPKDKGNADWSQRPLPNSMLAYAALDVEYLVPMHDMMIKELAELNRLDWYRQECEH 181

Query: 187 LMDRAE-LDLLGWENVD 202
              RA  L    W ++ 
Sbjct: 182 DRLRATPLAAPQWTDMK 198


>gi|260555081|ref|ZP_05827302.1| ribonuclease D [Acinetobacter baumannii ATCC 19606]
 gi|260411623|gb|EEX04920.1| ribonuclease D [Acinetobacter baumannii ATCC 19606]
          Length = 246

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE + +     +L + Q++  +G V ++        +     + + ++   IFH   
Sbjct: 25  GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFLAQQ--NIFHACG 80

Query: 84  FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            DI ++++      +  VF T++       +  Q   +  LK  L I+I K Q  SDW A
Sbjct: 81  EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             LS +QL YAA+DV++L  L     ++L++ G  +     C+ L 
Sbjct: 140 RPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185


>gi|311064600|ref|YP_003971325.1| ribonuclease D [Bifidobacterium bifidum PRL2010]
 gi|310866919|gb|ADP36288.1| Ribonuclease D [Bifidobacterium bifidum PRL2010]
          Length = 428

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 8/165 (4%)

Query: 28  ETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDE--KREKIFHYGRF 84
           E            +VQ    G G V +  +A  +  A    GM  D       I H    
Sbjct: 44  ERASGFRYGHEDWLVQFKREGAGIVLLDPVALTRAGAD--WGMFNDAVGDAVWILHDSLQ 101

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           D+       G+  + +F T+IA+R+   +  + GL    +  LG+ ++K   ++DWS   
Sbjct: 102 DLPGF-ADIGLTPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTLAKEHSAADWSYRP 158

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           L  +   YAA DV  L  LR +   +L+  G+   A     + + 
Sbjct: 159 LPRDWRNYAALDVELLIELRRKMQRELKAQGKDGWADEEFRYALQ 203


>gi|23465521|ref|NP_696124.1| hypothetical protein BL0948 [Bifidobacterium longum NCC2705]
 gi|23326181|gb|AAN24760.1| narrowly conserved hypothetical protein [Bifidobacterium longum
           NCC2705]
          Length = 433

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70
           +  A    ++A D E            ++Q    G G   +  +A      +       +
Sbjct: 34  DALAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+       G++ + +F T+IA+RL   +  + GL    +  LGI 
Sbjct: 94  GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           ++K   ++DWS   L  +   YAA DV  L  L       L+  G+ + A    + 
Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 204


>gi|262194484|ref|YP_003265693.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
 gi|262077831|gb|ACY13800.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
          Length = 925

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 10/162 (6%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           A  A      + +D ET       DR LC+VQL+  + TV I   A    +   +  +L 
Sbjct: 768 ACAALLGEPRVGLDVET----TLFDRALCLVQLAAPEYTVVID--ARAVDDLGPVSELLA 821

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGI 129
                KI H  +F+   +F   G+ +  VF T   SR  R       HGL       LG 
Sbjct: 822 SRAVVKIIHNAQFE-RSVFRKLGMDIENVFDTLKVSRRLRGRKREGGHGLGAVCARELGR 880

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            + K +Q SDW+   L+  QL YAA D   L  L  +FT +L
Sbjct: 881 ELDKHEQRSDWTLRPLTQRQLDYAALDAEVLLVLHERFTREL 922


>gi|220912416|ref|YP_002487725.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6]
 gi|219859294|gb|ACL39636.1| 3'-5' exonuclease [Arthrobacter chlorophenolicus A6]
          Length = 443

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71
           A   A       VD E         R  +VQ+   G GT  I        +   +   L 
Sbjct: 58  AAAIAAGTGPAGVDAERASGFRYGQRAFLVQIRREGAGTWLIDP--EPFDDLAIINDALR 115

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
               E I H    D+  L    G+    +F T++A+RL      + GL   +++LLG  +
Sbjct: 116 --GVEWILHAATQDLPCLS-ELGMWPDKLFDTELAARLAG--LPRVGLAAVIEQLLGFGL 170

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           +K   ++DWS   L +  L+YAA DV  L  LR +  E LQ  G+ + A      ++ 
Sbjct: 171 AKEHSAADWSTRPLPEPWLRYAALDVEVLSELREELVELLQADGKLEYAEQEFAAILA 228


>gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148]
          Length = 640

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 79/182 (43%), Gaps = 7/182 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
                ++  DTETL L P R +L ++QL     D  V I      + +  +L        
Sbjct: 15  LATSHSLCFDTETLQLQPERGKLRLLQLGARDRDTIVLIDCFQLDKGDWADLRWFFSTPD 74

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTN--QHGLKDNLKELLGINI 131
           R  + H   FD+  L     +     V C+ +ASRL        +HGL   +K  L   +
Sbjct: 75  RFWLAHNAVFDLGWLQEH-NIYPAGWVRCSMLASRLLTNGLPNSKHGLDSVVKRYLKKEL 133

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
           SK QQ SDWS D LS+EQL+YAA+DV  L  L      ++ R          C  L   A
Sbjct: 134 SKEQQRSDWSGD-LSEEQLEYAANDVAALMELDPILEHRISRDRLGPAFKLECRALPAMA 192

Query: 192 EL 193
           ++
Sbjct: 193 QM 194


>gi|119962304|ref|YP_947556.1| ribonuclease D [Arthrobacter aurescens TC1]
 gi|119949163|gb|ABM08074.1| putative ribonuclease D [Arthrobacter aurescens TC1]
          Length = 453

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/174 (27%), Positives = 71/174 (40%), Gaps = 8/174 (4%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71
           A   A       VD E         R  +VQ+   G GT  I        N   +   L 
Sbjct: 58  AAAIAAGTGPAGVDAERASGFRYGQRAFLVQIRREGAGTWLIDP--EPFDNLDIINDALR 115

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
               E I H    D+  L    G+    +F T++A+RL      + GL   +++LLG  +
Sbjct: 116 --GVEWILHAASQDLPCLS-ELGMWPDKLFDTELAARLAG--LPRVGLAAVIEQLLGFGL 170

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           +K   ++DWS   L +  L+YAA DV  L  LR +  E L+  G+ + A     
Sbjct: 171 AKEHSAADWSTRPLPEPWLRYAALDVEVLAELREELIELLEADGKLEYAEQEFA 224


>gi|224283333|ref|ZP_03646655.1| Ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
 gi|313140484|ref|ZP_07802677.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
 gi|313132994|gb|EFR50611.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
          Length = 428

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 8/165 (4%)

Query: 28  ETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDE--KREKIFHYGRF 84
           E            +VQ    G G V +  +A  +  A    GM  D       I H    
Sbjct: 44  ERASGFRYGHEDWLVQFKREGAGIVLLDPVALTRAGAD--WGMFNDAVGDAVWILHDSLQ 101

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           D+       G+  + +F T+IA+R+   +  + GL    +  LG+ ++K   ++DWS   
Sbjct: 102 DLPGF-ADIGLTPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTLAKEHSAADWSYRP 158

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           L  +   YAA DV  L  LR +   +L+  G+   A     + + 
Sbjct: 159 LPRDWRNYAALDVELLIELRRKMQRELKSQGKDGWADEEFRYALQ 203


>gi|312132962|ref|YP_004000301.1| rnd [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773944|gb|ADQ03432.1| Rnd [Bifidobacterium longum subsp. longum BBMN68]
          Length = 408

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70
           +  A    ++A D E            ++Q    G G   +  +A      +       +
Sbjct: 9   DALAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 68

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+       G++ + +F T+IA+RL   +  + GL    +  LGI 
Sbjct: 69  GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 123

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           ++K   ++DWS   L  +   YAA DV  L  L       L+  G+ + A    + 
Sbjct: 124 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 179


>gi|227549136|ref|ZP_03979185.1| ribonuclease [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078777|gb|EEI16740.1| ribonuclease [Corynebacterium lipophiloflavum DSM 44291]
          Length = 390

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 69/192 (35%), Gaps = 6/192 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGML 70
            A          A+DTE        DR  +VQ++  D GT               L  ++
Sbjct: 15  AAAQLFHGRGPCAIDTERASSFRYDDRAFLVQVNRRDAGTFLFAPEGHRDALREALAPVI 74

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                  I H    D+  L    G+    +F T+IA+RL      +  L   + E  G+ 
Sbjct: 75  GGTD--WILHAAGEDLPSL-AELGLHPGTLFDTEIAARLAG--FERPNLAAMVGEFTGVT 129

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           +       DWS   L  +   YAA DVV+L AL    TE L   G+ + A      +  R
Sbjct: 130 LDNGYGREDWSTIPLPLQWQAYAADDVVYLSALAEGLTEVLDAAGKLEAAEQEFEHVRTR 189

Query: 191 AELDLLGWENVD 202
                  W ++ 
Sbjct: 190 PAPAPKTWRDLK 201


>gi|270283861|ref|ZP_06193723.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093]
 gi|270277581|gb|EFA23435.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093]
          Length = 262

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 8/177 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIR--IAAGQKNAPNLVGMLVDE 73
           A     +A D E            +VQ    G G   +    +AA   +    +  + D 
Sbjct: 33  AYASGPVAADAERAAGFRYTHDDYLVQFKREGAGIALVDPQAVAADGADWAEFMQAVGDA 92

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           +   I H    D+       G+R   +F T++A+RL      + GL    +  LG+ ++K
Sbjct: 93  EF--ILHDSAQDLPGF-ADLGIRPHALFDTELAARLLG--LERFGLAYVTERYLGLTLAK 147

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
              ++DWS   L  +   YAA DV  L  LR      L+  G+ + A     + ++ 
Sbjct: 148 EHSAADWSHRPLPRDWRNYAALDVELLIELREAMMRDLKAAGKEEWARQEFAYALEH 204


>gi|224064982|ref|XP_002301621.1| predicted protein [Populus trichocarpa]
 gi|222843347|gb|EEE80894.1| predicted protein [Populus trichocarpa]
          Length = 228

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 5/167 (2%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           D+    +       AVDTE   L        ++Q+S  +    +  IA        L  +
Sbjct: 63  DLAHTLS--KHKVFAVDTEQHSLRSFLGFTALIQISTRNEDYLVDTIAL-HDVMGVLAPV 119

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             D    K+FH    D+  L   F + V  +F T  A  +      Q  L   L+   G+
Sbjct: 120 FADPTICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGV 177

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             +K  Q  DW    LS E L+YA +D  +L  +      +L+   R
Sbjct: 178 ATNKLLQREDWRQRPLSAEMLEYAQTDAHYLLYIAGCLIAELKLQDR 224


>gi|296453936|ref|YP_003661079.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
 gi|296183367|gb|ADH00249.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
          Length = 433

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70
           +  A    ++A D E            ++Q    G G   +  +A      +       +
Sbjct: 34  DALAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+       G++ + +F T+IA+RL   +  + GL    +  LGI 
Sbjct: 94  GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           ++K   ++DWS   L  +   YAA DV  L  L       L+  G+ + A    + 
Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETLMRRDLKAAGKDEWAAEEFSH 204


>gi|237785641|ref|YP_002906346.1| Ribonuclease D [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758553|gb|ACR17803.1| Ribonuclease D [Corynebacterium kroppenstedtii DSM 44385]
          Length = 462

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 7/184 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGML 70
            A   A     +AVDTE        DR  ++QL   G G   +   A      P L  ++
Sbjct: 67  AARVLANGHGPLAVDTERASAYRYGDRAFLLQLKRAGSGLFLVDAEACRSDMGP-LAPVV 125

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
              +   I H  R D+  L    G+    +  T++          +  L D +  L+G  
Sbjct: 126 --NRLTWIIHSARTDLPALL-DMGLTPHRLCDTELGG--CIAGLKKVNLGDMVDGLVGYR 180

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           ++K     +WS   L DE L YAA DV  L  L       L  L R       C ++   
Sbjct: 181 LAKEHGHENWSRRPLPDEWLDYAALDVECLLELSTTVAGLLSELDRFAWWAEECEYIRTS 240

Query: 191 AELD 194
              D
Sbjct: 241 TLAD 244


>gi|330863471|emb|CBX73589.1| hypothetical protein YEW_EH18310 [Yersinia enterocolitica W22703]
          Length = 143

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +A+DTE +       +L ++QL  G+    I  +   Q        +L D    
Sbjct: 19  ARTHAHVALDTEFVRTRTYYPQLGLIQLYDGEKLSLIDPLPITQ--WQPFRELLQDVSVV 76

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           K  H G  D+ V    F +   P+  T++ +  +   +   G    + EL G+ + K
Sbjct: 77  KYLHAGSEDLEVFLNAFELMPTPMIDTQVLAAFS-GRSLSCGFAMLVNELEGVELDK 132


>gi|213692580|ref|YP_002323166.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524041|gb|ACJ52788.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458732|dbj|BAJ69353.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 433

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70
           +  A    ++A D E            ++Q    G G   +  +A      +       +
Sbjct: 34  DALAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+       G++ + +F T+IA+RL   +  + GL    +  LGI 
Sbjct: 94  GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           ++K   ++DWS   L  +   YAA DV  L  L       L+  G+ + A    + 
Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETLMRRDLKAAGKDEWAAEEFSH 204


>gi|317482293|ref|ZP_07941314.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916309|gb|EFV37710.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
          Length = 433

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70
           +  A    ++A D E            ++Q    G G   +  +A      +       +
Sbjct: 34  DAMAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+       G++ + +F T+IA+RL   +  + GL    +  LGI 
Sbjct: 94  GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           ++K   ++DWS   L  +   YAA DV  L  L       L+  G+ + A    + 
Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 204


>gi|46190415|ref|ZP_00206459.1| COG0349: Ribonuclease D [Bifidobacterium longum DJO10A]
 gi|189439553|ref|YP_001954634.1| ribonuclease D [Bifidobacterium longum DJO10A]
 gi|189427988|gb|ACD98136.1| Ribonuclease D [Bifidobacterium longum DJO10A]
          Length = 433

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70
           +  A    ++A D E            ++Q    G G   +  +A      +       +
Sbjct: 34  DAMAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+       G++ + +F T+IA+RL   +  + GL    +  LGI 
Sbjct: 94  GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           ++K   ++DWS   L  +   YAA DV  L  L       L+  G+ + A    + 
Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 204


>gi|227546007|ref|ZP_03976056.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239621937|ref|ZP_04664968.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322688886|ref|YP_004208620.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|322690861|ref|YP_004220431.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227213641|gb|EEI81490.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239515128|gb|EEQ54995.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|320455717|dbj|BAJ66339.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460222|dbj|BAJ70842.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 433

 Score =  135 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 8/176 (4%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGML 70
           +  A    ++A D E            ++Q    G G   +  +A      +       +
Sbjct: 34  DAMAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAV 93

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D     I H    D+       G++ + +F T+IA+RL   +  + GL    +  LGI 
Sbjct: 94  GDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGIT 148

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           ++K   ++DWS   L  +   YAA DV  L  L       L+  G+ + A    + 
Sbjct: 149 LAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 204


>gi|218442029|ref|YP_002380358.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
 gi|218174757|gb|ACK73490.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
          Length = 648

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 11/154 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV-GMLVDEKRE 76
           + +DTE         RL ++Q+        +  V ++ +        + +  ++ + + E
Sbjct: 23  LWLDTEIADWYTPNPRLSLIQILTNPKNIEENNVYVLDVLDKPDLIQDFINQIMKNPQIE 82

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLK--DNLKELLGINISK 133
           K+FH   FDI  L       V+ V CT KIA ++ +   N   LK     + L  + I +
Sbjct: 83  KVFHNASFDIKYLG--GKEEVKNVTCTLKIAKKIGKHSLNVPNLKLKTLAEYLCNLPIVE 140

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            QQ+SDW    L++ QL YA  DVV+L  +    
Sbjct: 141 DQQASDWGKRPLTELQLNYAKMDVVYLANVHHYL 174


>gi|300867748|ref|ZP_07112393.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300334331|emb|CBN57565.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 433

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 15/176 (8%)

Query: 9   GDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLS------PGDGTVDIIRIAAGQK 61
            DI A  A       + +DTE          L ++Q+        G+ +  +  +   + 
Sbjct: 8   NDIKALIAKFSQAKILWIDTEVADYK-FNPTLSLIQVLADANDLTGNASFLLDVLEQPEL 66

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHG 118
               +  ++ +   EK+ H   +DI  L      R + + CT   +R    Y      H 
Sbjct: 67  TVDFIDKIMANPDIEKVMHNASYDIRFLGND---RAQNITCTLKLARKIPYYVLPLPNHK 123

Query: 119 LKDNLKELLGI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           LK  ++ L GI N+ KA+Q  DW    L+++QL+YA  DVV+L  +     E +  
Sbjct: 124 LKTLIEALCGIPNVDKAEQGGDWGKRPLTEKQLEYAKMDVVYLAEVHSHLIEIVDE 179


>gi|169633537|ref|YP_001707273.1| ribonuclease D, processes tRNA [Acinetobacter baumannii SDF]
 gi|169152329|emb|CAP01251.1| ribonuclease D, processes tRNA [Acinetobacter baumannii]
          Length = 374

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +DTE + +     +L + Q++  +G V ++        +     + + ++   IFH   
Sbjct: 25  GLDTEFIKVDTLWPKLGVCQVNV-NGNVYLLD-GVSLDLSEFWKKIFLAQQ--NIFHACG 80

Query: 84  FDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
            DI ++++      +  VF T++       +  Q   +  LK  L I+I K Q  SDW A
Sbjct: 81  EDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVSYQGALKLCLEIDIEKDQTRSDWLA 139

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             LS +QL YAA+DV+ L  L     ++L++ G  +     C+ L 
Sbjct: 140 RPLSPQQLCYAANDVLFLMQLANHIKDQLKQKGLYEYVLEDCSSLT 185


>gi|289610752|emb|CBI60186.1| unnamed protein product [Sordaria macrospora]
          Length = 134

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 29/150 (19%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           + A C      D +AVDTE +        LC++Q++  +    I  +A G    P L  +
Sbjct: 13  LAALCTRLATSDFVAVDTEFMRENSYWPELCLIQIANTEEAAAIDPMAPGIDLTPLLNLL 72

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             +E   K+                            + +      Q G  + +   LGI
Sbjct: 73  TDNEDVLKV----------------------------AAMALGQGEQVGYSNLVDAYLGI 104

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVH 159
            + K  + +DWS   L D Q+ YA +D  H
Sbjct: 105 TVDKGARFTDWSRRPLDDRQIDYAIADATH 134


>gi|241600516|ref|XP_002405158.1| exosome component, putative [Ixodes scapularis]
 gi|215502468|gb|EEC11962.1| exosome component, putative [Ixodes scapularis]
          Length = 518

 Score =  134 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 3/147 (2%)

Query: 29  TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV 88
                  +   C++Q+S       +  +A  +     L  +  + K  K+ H    D+  
Sbjct: 40  HHSYRTFQGFTCLMQISTRSSDYVVDTLAL-RHELHLLNEVFANPKIIKVLHGADMDVLW 98

Query: 89  LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDE 148
           L   FG+ +  +F T  A+R+         L   L+    ++  K  Q +DW    L  E
Sbjct: 99  LQRDFGLYLVGLFDTGQAARVLGM--AHLSLAFLLRHYCHLDTDKKFQLADWRIRPLPLE 156

Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLG 175
            ++YA  D  +L  +       L   G
Sbjct: 157 MIKYAREDTHYLLHVYDLMRRDLLAKG 183


>gi|169234702|ref|NP_001108472.1| PM-Scl autoantigen-like protein [Bombyx mori]
 gi|18700467|dbj|BAB85201.1| PM-Scl autoantigen-like protein [Bombyx mori]
 gi|22474519|dbj|BAC10623.1| PM-Scl autoantigen-like protein [Bombyx mori]
          Length = 451

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 19  YVDAIAVDTETLGLMPRRD---------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
            V+ IAVD E       RD           C++Q+S  +G   II   A +++   L  +
Sbjct: 137 AVEQIAVDVEH---HSYRDLSGLYLILGITCLIQISTDEGGDFIIDALAVREHIHKLNVV 193

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             D K+ K+FH    D+  L   FGV +  +F T  A++          LK  L +  G+
Sbjct: 194 FTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLG--LPALSLKFLLMKYCGV 251

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +  K  + +DW    L D  ++YA  D  +L  +      ++    
Sbjct: 252 DTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKN 297


>gi|291517068|emb|CBK70684.1| Ribonuclease D [Bifidobacterium longum subsp. longum F8]
          Length = 398

 Score =  134 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 8/173 (4%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIA--AGQKNAPNLVGMLVDE 73
           A    ++A D E            ++Q    G G   +  +A      +       + D 
Sbjct: 2   AEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAGADWNEFNDAVGDA 61

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
               I H    D+       G++ + +F T+IA+RL   +  + GL    +  LGI ++K
Sbjct: 62  --TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGLH--RFGLAAVTEHYLGITLAK 116

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
              ++DWS   L  +   YAA DV  L  L       L+  G+ + A    + 
Sbjct: 117 EHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAAEEFSH 169


>gi|242050364|ref|XP_002462926.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
 gi|241926303|gb|EER99447.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
          Length = 760

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 6/164 (3%)

Query: 14  ECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           E  AR +    A AVDTE   +        ++Q+S  +    I  IA        L  + 
Sbjct: 23  EHLARLLGEERAFAVDTEQHSIRSFLGYTALMQISTQNDDYLIDTIAL-HDVMGILRPVF 81

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            +    KIFH    D+  L   F + V  +F T  A         Q  L   L+    + 
Sbjct: 82  ANSSICKIFHGADNDVLWLQRDFHIYVVNMFDT--AKACETLSKPQKSLAYLLEVYCEVT 139

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
             K  Q  DW    L+ E ++YA +D  +L  +      +L   
Sbjct: 140 TDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAK 183


>gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 576

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 30/206 (14%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A  +   V  + +DTET G     DR+ + Q+   +  + +I +    +    L  ++  
Sbjct: 15  AVASLERVPYLFIDTETTG-----DRIRLFQVGDEE-RIFVIDLFDLPEAVDVLKELIAK 68

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           +    + H  +FD+  ++   G+     F T I S L      +H L    + LLG  + 
Sbjct: 69  KGV--VGHNLKFDLKFMY-PLGIVPYATFDTMIGSFLLGY--ERHSLSHVAERLLGYTMD 123

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS---------- 182
           K+ Q SDWS   L+ +Q++YAA+DV+ +  L  +  EKL  LG +D              
Sbjct: 124 KSLQLSDWSRTALTKQQIEYAATDVLVVRELFYKMREKLNALGETDRGEELLRTRTARVF 183

Query: 183 ---------CCNFLMDRAELDLLGWE 199
                       F+ + A L++ G  
Sbjct: 184 GLTNPATVVEMAFVQEIARLEMNGIP 209


>gi|227833267|ref|YP_002834974.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
 gi|262184251|ref|ZP_06043672.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
 gi|227454283|gb|ACP33036.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
          Length = 407

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 6/178 (3%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNAPNLVGMLV 71
           A   A      A+DTE        DR  +VQ+   G GT          +    L  +L 
Sbjct: 26  AARLAAGTGPFAIDTERASSYRFDDRAFLVQVRREGAGTFLFAPEHHRDELHAALAPVL- 84

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
              +E + H    D+  L    G+    +F T++A+R          L   + EL  + +
Sbjct: 85  -NGQEWVVHAAPSDLPSL-AWLGLYPGMLFDTELAARFAGFAHP--NLAAMVLELFDVEL 140

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            K    SDWS   +  +   YAA DV  L+ L +   + L    + D A      +++
Sbjct: 141 EKGYGDSDWSETPIPRKWRNYAALDVELLNELAVTLRDILAEQDKLDWAYEEFERIVE 198


>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus]
          Length = 574

 Score =  133 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 84/205 (40%), Gaps = 31/205 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
                 + +DTET G     +R+ +VQL   + T  I        +   L  ++ ++   
Sbjct: 19  LEKSPYLYLDTETTG-----NRIRLVQLGDDEKTYVID--LYEIHDITPLRELISEKGV- 70

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            I H  +FD+  L     +     F T IAS L      +H L   +  LLG  + K+ Q
Sbjct: 71  -IGHNLKFDLHYLMNY-QIEPLATFDTMIASFLLGY--ERHSLNHLVGNLLGYTLDKSYQ 126

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ-------------RLGR-----SD 178
            SDW A  LSD QL+YAA DV  L  L  +  + L              R  R     S 
Sbjct: 127 LSDWGAPVLSDAQLKYAAKDVDVLRELFPKLRDMLNELEGERGEELLKTRTARIFGLKSP 186

Query: 179 LATSCCNFLMDRAELDLLGWENVDI 203
           +A     F+ + A+L+  G   VDI
Sbjct: 187 VAIVEMAFVKEVAKLERNGLP-VDI 210


>gi|115767336|ref|XP_001198019.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus
           purpuratus]
 gi|115963545|ref|XP_001176068.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus
           purpuratus]
          Length = 228

 Score =  133 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 86/197 (43%), Gaps = 20/197 (10%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGML 70
           + + R    I +D E + L   +  L +VQ+S  DG     D  +     K   +L  +L
Sbjct: 23  DQSTRQTVVIGLDCEGVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKIL 82

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLKE 125
                 K+ H  + D   L + FGV+++ VF T IA R     + R  + + G K    E
Sbjct: 83  EHNSILKVIHDCKSDTYGLHHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFKALC-E 141

Query: 126 LLGIN--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLG 175
           LLG          + K  ++ D W    L++E + YAASD + L   + L+F   L  L 
Sbjct: 142 LLGEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNGMLTPLW 201

Query: 176 RSDLATSCCNFLMDRAE 192
           R DL T  C   M+  +
Sbjct: 202 R-DLFTWSCKDTMESIQ 217


>gi|332708965|ref|ZP_08428935.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya
           majuscula 3L]
 gi|332352154|gb|EGJ31724.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya
           majuscula 3L]
          Length = 890

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 16/175 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQ-LSP-----GDGTVDIIRIAAGQKNAPNLVGML 70
                 + +DTE         RL ++Q L+      GD    +  +   +     +  ++
Sbjct: 16  LSAAKILWLDTEIADWNTPNPRLSLIQVLADPTDINGDKAYILDVLDQPEIVKDFVNYIM 75

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTR------TYTNQHGLKDNL 123
           V+   EK+FH   FD+  L      +   V CT +IA +LT          + H LK   
Sbjct: 76  VNPNIEKVFHNASFDLRYLG--GKEQANNVTCTYQIARKLTNKKLSNPLQVSNHKLKTLA 133

Query: 124 KELLGI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            EL    N+   +QSSDW    L+ +QL YA  D V+L  +  +  E   +   S
Sbjct: 134 LELCNFANVDTEEQSSDWGKRPLTQKQLNYAKMDTVYLAHVHRRLLEISDKNSWS 188


>gi|115661808|ref|XP_001202523.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
 gi|115689950|ref|XP_001201160.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
          Length = 234

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 86/197 (43%), Gaps = 20/197 (10%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGML 70
           + + R    I +D E + L   +  L +VQ+S  DG     D  +     K   +L  +L
Sbjct: 29  DQSTRQTVVIGLDCEGVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKIL 88

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLKE 125
                 K+ H  + D   L + FGV+++ VF T IA R     + R  + + G K    E
Sbjct: 89  EHNSILKVIHDCKSDTYGLHHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFKALC-E 147

Query: 126 LLGIN--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLG 175
           LLG          + K  ++ D W    L++E + YAASD + L   + L+F   L  L 
Sbjct: 148 LLGEGATHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLIPSIYLKFNGMLTPLW 207

Query: 176 RSDLATSCCNFLMDRAE 192
           R DL T  C   M+  +
Sbjct: 208 R-DLFTWSCKDTMESIQ 223


>gi|242034371|ref|XP_002464580.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
 gi|241918434|gb|EER91578.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
          Length = 882

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 23/188 (12%)

Query: 2   TTIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
            T      D+      A +  DA    TE               +S       +  +   
Sbjct: 260 DTPFTFVEDLKTLEVLATKLKDA----TEFA-------------ISTRTEDFIVDTLKLR 302

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           +     L     D  ++K+ H    DI  L   F + V  +F T  AS++     +++ L
Sbjct: 303 KYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSIYVCNLFDTGQASKVL--QMDRNSL 360

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL--QRLGRS 177
           +  L    G+  +K  Q++DW    L DE ++YA  D  +L  +      +L  +  G +
Sbjct: 361 EHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVNESSGEN 420

Query: 178 DLATSCCN 185
           DL    C 
Sbjct: 421 DLLLEVCK 428


>gi|262277377|ref|ZP_06055170.1| putative ribonuclease D [alpha proteobacterium HIMB114]
 gi|262224480|gb|EEY74939.1| putative ribonuclease D [alpha proteobacterium HIMB114]
          Length = 352

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 3/170 (1%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + VDTE         +L I+ +S G   V I  +         +  +   +K+ KI H G
Sbjct: 22  LCVDTEFERKKTYYSKLSIITISDG-QKVFIFDLLKFPDQIKTIREIFKSKKKIKIIHGG 80

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI +      V + P F T+IAS             + +K+     + K  Q+ DW  
Sbjct: 81  MQDIEIFLNH-NVNIEPFFDTQIASGFL-GLDKNISYANLVKKYFKKILDKKHQNEDWLK 138

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
             L + Q++Y   DV +L  + L   + L++  + + A    + ++ + +
Sbjct: 139 RPLLNSQIKYLERDVKYLKKMYLIQNKLLKKEKKLNFAKEEFSLILKKIK 188


>gi|162452521|ref|YP_001614888.1| hypothetical protein sce4245 [Sorangium cellulosum 'So ce 56']
 gi|161163103|emb|CAN94408.1| rnd [Sorangium cellulosum 'So ce 56']
          Length = 403

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 76/177 (42%), Gaps = 6/177 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
           A   DA+AVD E  GL   R RLC VQL+   GDG    I  A     AP L  +L    
Sbjct: 22  AGRADALAVDVEANGLFVYRPRLCTVQLAFREGDGIAVGIVDALRVPVAP-LARLLGAAG 80

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+ H   FD  +L    G  +     T +A+R+        GL   L   L + + K 
Sbjct: 81  PPKVLHDLTFDARML-AEAGAPLGGAHDTSVAARMLGCAAT--GLGALLLSELDVKVDKQ 137

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
            Q  DW    + D +L+Y A DV HL  LR +  E+   LG  +     C + +  A
Sbjct: 138 LQQHDWGRRPIEDAELRYLADDVRHLLPLRARLAERSGALGIDEEIEEECAYKLATA 194


>gi|119487547|ref|ZP_01621157.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
 gi|119455716|gb|EAW36852.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
          Length = 309

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 15/212 (7%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG------DGTVDII 54
           M+ +   E            + + +DTE       + RL ++Q+         D      
Sbjct: 1   MSYLTTPESIQAVISQLSSAEILWLDTEVADYKN-KPRLSLIQVLTTPNEIKSDHLYLFD 59

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
            +   +     +  ++ +   EK+FH   +D+ +L      + + V CT + ++    Y 
Sbjct: 60  VLDQPELTTLFIEEIMANPAIEKVFHNANYDLKLL---GKKQSKNVTCTLVMAKKIPYYL 116

Query: 115 ---NQHGLKDNLKELLGI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
                + LK    +L    NI K +QSSDW    L+++QL+YA  DVV+L  +      K
Sbjct: 117 LPVPNYQLKTLATQLGDFTNIDKQEQSSDWGQRPLTEKQLEYAQMDVVYLAQIHQCLL-K 175

Query: 171 LQRLGRSDLATSCCNFLMDRAELDLLGWENVD 202
           LQ L   D  T   N L  R +     W+ +D
Sbjct: 176 LQPLASPDPTTEDLNKLATRYQEIAHDWKQLD 207


>gi|289671331|ref|ZP_06492406.1| ribonuclease D [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 293

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 1/122 (0%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+ H    D+       GV  RP+F T+IA+ L          +  ++E+ G  ++
Sbjct: 1   TDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMG-YQKLVQEVTGTLLT 59

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           K +  SDW    LS  QL+YAA DV +L A+  + T +L    R          L+   E
Sbjct: 60  KGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQDRLGWLAEDAERLLATVE 119

Query: 193 LD 194
            D
Sbjct: 120 HD 121


>gi|119512751|ref|ZP_01631822.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
 gi|119462619|gb|EAW43585.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
          Length = 306

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 15/198 (7%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSP------GDGTVDIIRIAAGQKNAPNLVGMLVDE 73
              + +DTE      R  RL ++Q+        GD    +  +         +  ++++ 
Sbjct: 20  AKTLWIDTEVADYKSRNPRLSLIQVLDDPTDMSGDRVNLLDVLNQPDVVGEFIEQIMINP 79

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRT--YTNQHGLKDNLKELLGIN 130
           + EK+FH   +D+  L      R + + CT +IA ++         + LK     L   N
Sbjct: 80  EIEKVFHNANYDLKFL---GKKRAKNITCTLEIAQKIPYYILPLPNYQLKTLATALCRFN 136

Query: 131 -ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            I K +QSSDW    L++ Q++YA  D ++L  + LQ  E LQ     D  T     L  
Sbjct: 137 YIDKQEQSSDWGRRPLTEGQIEYAYLDCIYLAQVHLQLLE-LQVASNPDPKTEDLTALDA 195

Query: 190 RAELDLLGWENVDI-FSH 206
           R       W+ +   F H
Sbjct: 196 RYSELSENWQLLKSEFEH 213


>gi|310287702|ref|YP_003938960.1| Ribonuclease D [Bifidobacterium bifidum S17]
 gi|309251638|gb|ADO53386.1| Ribonuclease D [Bifidobacterium bifidum S17]
          Length = 428

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 8/165 (4%)

Query: 28  ETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDE--KREKIFHYGRF 84
           E            +VQ    G G V +  +A  +  A    GM  D       I H    
Sbjct: 44  ERASGFRYGHEDWLVQFKREGAGIVLLDPVALTRAGAD--WGMFNDAVGDAVWILHDSLQ 101

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           D+       G+  + +F T+IA+R+   +  + GL    +  LG+  +K   ++DWS   
Sbjct: 102 DLPGF-ADIGLAPQALFDTEIAARMLGLH--RFGLAAVTEHYLGVTFAKEHSAADWSYRP 158

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           L  +   YAA DV  L  LR +   +L+  G+   A     + + 
Sbjct: 159 LPRDWRNYAALDVELLIELRRKMQRELKVQGKDGWADEEFRYALQ 203


>gi|169617554|ref|XP_001802191.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
 gi|111059251|gb|EAT80371.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
          Length = 805

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 7/169 (4%)

Query: 10  DIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           D P   A      +    IAVD E          + ++Q+S  D    +  +   ++   
Sbjct: 236 DTPEAVAEMLAELKTAKEIAVDLEHHDNRSYIGMVSLMQISTRDKDWIVDTLKPWRRKLE 295

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  D    K+ H    DI  L    G+ +  +F T  A+R          L   L+
Sbjct: 296 CLNEVFADPNILKVLHGAYMDIMWLQRDLGLYIVGLFDTHHAARSLGYPGG--SLAYLLE 353

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
             +     K  Q +DW    L  E  +YA +D   L  +      +L  
Sbjct: 354 RHVQFKAQKQYQLADWRIRPLGKELFEYARADTHFLLYIFDNMRNELVE 402


>gi|300864534|ref|ZP_07109398.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337492|emb|CBN54546.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 880

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 13/165 (7%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQL-SPGDGT----VDIIRIAAGQKNAPNLVGM-LVDE 73
            + I  DTE         RL ++Q+ +  +        I+ +    +   N + + + + 
Sbjct: 20  AEIIWADTEVADWQTPNPRLSLIQILADPNDLTGDFAYILDVLDKPELVENFIDLIMANP 79

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLT--RTYTNQHGLKDNLKELLGI- 129
             EK+FH   +D+  L      + + V CT KIA +L+  R       LK     L    
Sbjct: 80  TIEKVFHNSSYDLRYL---GKTQAKNVTCTWKIAQKLSLERLQVPNRQLKTLAAGLCKFT 136

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            I+K +Q+SDW    L+ +QL YA  D V+L  +  +  E   + 
Sbjct: 137 EINKQEQTSDWGRRPLTQKQLDYAKMDTVYLAGVHRRLLELTNQK 181


>gi|186685790|ref|YP_001868986.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
 gi|186468242|gb|ACC84043.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
          Length = 306

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 15/198 (7%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSP------GDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           +  + +DTE      R  RL ++Q+        GD    +  +      A  +  ++++ 
Sbjct: 20  IKTLWIDTEVADYKSRNPRLSLIQVLDNPQDMSGDRVYLLDVLDQPNIIAEFIEKIMINS 79

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHGLKDNLKELLGIN 130
             EK+FH   +D+  L      + + + CT    +    +      + LK     L   N
Sbjct: 80  AIEKVFHNASYDLKFLGN---KKAKNITCTLEMVKKIPYHILPLPNYQLKTIATALCSFN 136

Query: 131 -ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
            I K +Q+SDW    L++EQ++YA  D ++L  +       LQ     + AT     L  
Sbjct: 137 NIDKQEQTSDWGKRPLTEEQIEYAYLDCIYLAQIHSNLLS-LQAKANPEPATEDLTSLST 195

Query: 190 RAELDLLGWENVDI-FSH 206
           R       W+ ++  F H
Sbjct: 196 RYSQLEQQWKLLNSEFEH 213


>gi|312218247|emb|CBX98193.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria
           maculans]
          Length = 783

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 7/170 (4%)

Query: 10  DIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           D P   A      +    IAVD E          + ++Q+S  +    +  +   ++   
Sbjct: 219 DTPEALASMLAELKTAKEIAVDLEHHDNRSYIGIVSLMQISTRNQDWIVDTLKPWRRKLE 278

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +  +    K+ H    DI  L    G+ V  +F T  A+R          L   L 
Sbjct: 279 CLNEVFANPDIIKVLHGAYMDIMWLQRDLGLYVVGLFDTYHAARSLGYPG--ASLAYLLD 336

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
             +G    K  Q +DW    L  E  +YA +D   L  +      +L   
Sbjct: 337 RFIGFKAQKQYQIADWRIRPLGKELFEYARADTHFLLYIFDNMRNELVEK 386


>gi|115665303|ref|XP_001177704.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
 gi|115976409|ref|XP_001186302.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
          Length = 579

 Score =  130 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 80/186 (43%), Gaps = 20/186 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV---DIIRIAAGQKNAPNLVGMLVDEK 74
           R    I +D E +GL      L +VQ+S  DG     D  +     K   +L  +L    
Sbjct: 387 RETVVIGLDCEGVGLGRAGGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKILEHNS 446

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-----LTRTYTNQHGLKDNLKELLGI 129
             K+ H  + D   L++ FGV+++ VF T IA R     L R  + Q G K    ELLG 
Sbjct: 447 ILKVIHDCKSDAYSLYHGFGVKLKNVFDTSIAMRTIMEQLNRNRSYQVGFKALC-ELLGE 505

Query: 130 N--------ISKAQQSSD-WSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDL 179
                    + K  ++ D W    L++E + YAASD + L   + L+    L  L   DL
Sbjct: 506 GASHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDALCLVPSVYLKINGMLTPL-WQDL 564

Query: 180 ATSCCN 185
            T  C 
Sbjct: 565 FTWSCK 570


>gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 586

 Score =  130 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 25/220 (11%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETL-----GLMPRRDRLCIVQLSPGDGTVDIIRIA 57
                E  + +    +    + +DTE +      +    D++ ++Q+   + T  I  + 
Sbjct: 4   NYITQENQLESLKVLQDKPYLYLDTEVMIKDFENIDFFNDKIRLIQIGDEENTFVIDLLK 63

Query: 58  AGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN- 115
              +   N +  ++ ++    I H  +FD+  L     +  + VF T IAS++     N 
Sbjct: 64  INPEVVKNHIQNLIENKGI--IGHNLKFDLKFLKTNLNILPKIVFDTMIASQILAKGDNS 121

Query: 116 -QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +H L  + K  + +++ K  Q S W A DLS EQ++YAA D+  L  L  +   +L + 
Sbjct: 122 QRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSPEQIEYAAKDIDALRHLFKEEKNQLNQD 181

Query: 175 GR---------------SDLATSCCNFLMDRAELDLLGWE 199
                            + +A     FL    E++L G  
Sbjct: 182 NLHKKASGETFKVFGVINPVAALEMAFLPALVEIELSGIP 221


>gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 587

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 27/224 (12%)

Query: 1   MTTIR--VHEGDIPAECAARYVDAIAVDTETL-----GLMPRRDRLCIVQLSPGDGTVDI 53
           M  I     E  + +    +    + +DTE +      +    D++ ++Q+   + T  I
Sbjct: 1   MMDINYITQENQLESLKVLQDTPYLYLDTEVMIKDFENIDFFNDKIRLIQIGDEENTFVI 60

Query: 54  IRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
             +    +   N +  ++ ++    I H  +FD+  L     +  + VF T IAS++   
Sbjct: 61  DLLKINPEVVKNHIQNLIENKGI--IGHNLKFDLKFLKTNLNILPKIVFDTMIASQILAK 118

Query: 113 YTN--QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
             +  +H L  + K  + +++ K  Q S W A DLS EQ++YAA D+  L  L  +   +
Sbjct: 119 GDSNQRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSSEQIEYAAKDIDTLRHLFKEEKNQ 178

Query: 171 LQRLGR---------------SDLATSCCNFLMDRAELDLLGWE 199
           L +                  + +A     FL    E++L G  
Sbjct: 179 LNQDNLHKKASGETFKVFGVINPVAALEMAFLPALVEIELSGIP 222


>gi|168005501|ref|XP_001755449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693577|gb|EDQ79929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 824

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 3/158 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +    I VD E   +   R  + ++Q+S       +  IA    +   L  +  +    
Sbjct: 82  LKGEKEIGVDIEHHHVRSFRGFIPLIQISTYSTDYLVDAIAL-HDDMHLLHPIFANPAIL 140

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           KIFH    D   L   F + +  +F T  A  +      Q  L   L+   G++  K  Q
Sbjct: 141 KIFHGADNDSLWLQRDFHIYIVNLFDTARACDVLGK--PQRSLAYLLQLYCGVSTKKIYQ 198

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            SDW    L  E   YA +D  +L  +       L + 
Sbjct: 199 RSDWRVRPLPAEMEIYARTDAHYLLYIAQCMRANLVQA 236


>gi|299473136|emb|CBN78712.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1278

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 3/135 (2%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A      IAVD E          +C++QLS  +    +  +    +    L+ +  D   
Sbjct: 329 AREACREIAVDLEHHSFRTFLGVVCLMQLSTREQDYIVDPLKLRGEMG-RLLPVFSDPNI 387

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+FH    D+  L    G+ +  +F T  A+R  +      GL   L++       K  
Sbjct: 388 VKVFHGSDSDVLWLQRDLGLYLVNMFDTGQAAR--QLGLPSFGLAHLLEKFCDFVPDKKH 445

Query: 136 QSSDWSADDLSDEQL 150
           Q SDW    L  + L
Sbjct: 446 QLSDWRMRPLPADML 460


>gi|17229189|ref|NP_485737.1| hypothetical protein all1697 [Nostoc sp. PCC 7120]
 gi|17135517|dbj|BAB78063.1| all1697 [Nostoc sp. PCC 7120]
          Length = 302

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 13/161 (8%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP------GDGTVDIIRIAAGQKNAPNLVGMLVD 72
               + +DTE      R  RL ++Q+        GD    +  +      A  +  ++V+
Sbjct: 19  QATTLWIDTEVADYKSRNPRLSLIQVLDDPNDMSGDRVYLLDVLDQPDLVADFVDKIMVN 78

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTN--QHGLKDNLKELLGI 129
              EK+FH   FD+ +L      + R + CT +IA ++         + L+   K L   
Sbjct: 79  TNIEKVFHNANFDVKLLGN---KQARNITCTLEIAKKIPYYLLPVQNYQLQSLAKLLCNF 135

Query: 130 N-ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           N I K +Q S+W    LS+EQ++YA  D ++L  +  +  E
Sbjct: 136 NNIDKQEQGSNWGQRPLSEEQIEYAYLDCIYLAQIHRRLLE 176


>gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA]
 gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei]
          Length = 1808

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 5/183 (2%)

Query: 19   YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKRE 76
             +    +D ET GL    +++ ++Q+S  +  V I  +     N     L  +L DE   
Sbjct: 1255 GIKYCGLDMETTGLEVFGEKIRLIQISVENYPVIIYDMFNITNNNILDGLRKILNDENIV 1314

Query: 77   KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKA 134
            KI   G+FD   L Y     +  +F T IAS+L     N +G K  + +++ L + + K 
Sbjct: 1315 KIIQNGKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQ 1373

Query: 135  QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
            QQ+S W+   L++ QL YAA D   L  L  + +E+++      +       ++   +++
Sbjct: 1374 QQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQIKAENMQIVNDIENKCILPICDME 1433

Query: 195  LLG 197
            L G
Sbjct: 1434 LNG 1436


>gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 964

 Score =  128 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 21  DAIAVDTETLGLMPRRDR----LCIVQLSPGDGTVDIIRIAAGQKNAPNL-VGMLVDEKR 75
               +D E       +D+    +C +Q+S  +    I  +A   +    L   + +++ +
Sbjct: 773 SIFGIDLEYYSEN--KDKNLGFVCTIQISTVNMDFMIDAMALRNQINQLLNKSLFLNKTK 830

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            KI H    DI  L   F + +  +F T  A  + +     + LK+  ++ LG+ + K+ 
Sbjct: 831 IKILHGCENDIKWLKNDFDIDIVNLFDTMFAEMIIKNKQQSYSLKNLSQDYLGVELDKSY 890

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           Q SDW    L    + YA  D   L  L     + L      +
Sbjct: 891 QISDWRIRPLPTPMMNYARVDSFILLRLFPIMKQMLTSKNLLN 933


>gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
          Length = 1813

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 5/183 (2%)

Query: 19   YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKRE 76
             +    +D ET GL    +++ ++Q++  +  V I  +     N     L  +L DE   
Sbjct: 1260 GIKYCGLDMETTGLEVFGEKIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIV 1319

Query: 77   KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKA 134
            KI   G+FD   L Y     +  +F T IAS+L     N +G K  + +++ L + + K 
Sbjct: 1320 KIIQNGKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQ 1378

Query: 135  QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
            QQ+S W+   L++ QL YAA D   L  L  + +E++       +       ++   +++
Sbjct: 1379 QQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQITAENMQIVNDIENKCILPICDME 1438

Query: 195  LLG 197
            L G
Sbjct: 1439 LNG 1441


>gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi]
 gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi]
          Length = 1429

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 5/183 (2%)

Query: 19   YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKRE 76
             +    +D ET GL    +++ ++Q++  +  V I  +     N     L  +L DE   
Sbjct: 1241 GIKYCGLDMETTGLEVFGEKIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIV 1300

Query: 77   KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKA 134
            KI   G+FD   L Y     +  +F T IAS+L     N +G K  + +++ L + + K 
Sbjct: 1301 KIIQNGKFDTKFLLYN-NFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQ 1359

Query: 135  QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
            QQ+S W+   L++ QL YAA D   L  L  + +E++       +       ++   +++
Sbjct: 1360 QQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQIVAENMQIVNDIENKCILPICDME 1419

Query: 195  LLG 197
            L G
Sbjct: 1420 LNG 1422


>gi|219126108|ref|XP_002183306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405062|gb|EEC45006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 311

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 28/183 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS-------------------------PGDGTV 51
             +V  IA+D E          +C++QLS                         P     
Sbjct: 131 LAHVTEIALDLEAHSYRSFAGMVCLLQLSFRDHHYHDKDDHDTPNDNDDTNDNSPTVHNF 190

Query: 52  DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111
            I  I         L+ +L +    K+ H    DIA L   FG+ +  +F T  A+R  +
Sbjct: 191 LIDTIVLKPYLNEVLLPVLTNPDVVKVLHGADSDIAWLQRDFGLYIVNLFDTMRAARALK 250

Query: 112 TYTNQHGLKDNLKELL-GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
               +      L+  + G++  K+ Q +DW    L +   QYA  D  +L  +  +    
Sbjct: 251 --FPRASYAYVLQHYVDGLHADKSAQLADWRVRPLPEALQQYAIQDTAYLLDIYDRMRYD 308

Query: 171 LQR 173
           L +
Sbjct: 309 LSQ 311


>gi|75906891|ref|YP_321187.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
 gi|75700616|gb|ABA20292.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
          Length = 302

 Score =  127 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 25/189 (13%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP------GDGTVDIIRIAAGQKNAPNLVGMLVD 72
               + +DTE      R  RL ++Q+        GD    +  +      A  +  ++V 
Sbjct: 19  QATTLWIDTEVADYKSRNPRLSLIQVLDDPDDMSGDRVYLLDVLDQPDLVANFVEKIMVS 78

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTN--QHGLKDNLKELLGI 129
              EK+FH   FD+ +L      + + + CT +IA ++         + L+     L   
Sbjct: 79  TNIEKVFHNASFDVKLLGN---KQAKNITCTLEIAKKIPYHLLPVQNYQLQSLATLLCNF 135

Query: 130 N-ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           N I K +QSS+W    LS+EQ++YA  D ++L  +  +  +                   
Sbjct: 136 NNIDKQEQSSNWGRRPLSEEQIEYAYLDCIYLAQIHRRLLDLQIESN------------P 183

Query: 189 DRAELDLLG 197
           D A +D+  
Sbjct: 184 DPATVDITA 192


>gi|254416561|ref|ZP_05030312.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196176527|gb|EDX71540.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 303

 Score =  127 bits (320), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 19/196 (9%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQ-LSPGD----GTVDIIRIAAGQKNAPNLVG-MLVD 72
               + +DTE         +L ++Q L+ G+     +V I+ +    + A   +  ++ +
Sbjct: 19  QASILWLDTEVADYKTDTPQLSLIQVLADGNDLTAESVGILDVLYQPELADEFIAKVMYN 78

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHGLKDNLKELLGI 129
              EK+FH   +D   L      + + V CT   ++    Y      + LK    E  GI
Sbjct: 79  PAIEKVFHNASYDRKFLGKH---KAKNVTCTLELAKTIPYYRLPVPNYQLKTLT-EYFGI 134

Query: 130 --NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
              + K +Q+ DW    LS  QL YAA DVV++  L     +    L + D AT     L
Sbjct: 135 CPQVDKTEQTGDWRKRPLSPRQLDYAAKDVVYVAHLHRHLLD----LAQPDPATEDIEAL 190

Query: 188 MDRAELDLLGWENVDI 203
             R       W+ +D 
Sbjct: 191 TLRYRQIEHRWKQLDT 206


>gi|254411454|ref|ZP_05025231.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196181955|gb|EDX76942.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 862

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 16/164 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQL------SPGDGTVDIIRIAAGQKNAPNLVGML 70
                 + +DTE         RL ++Q+        GD       +         +  ++
Sbjct: 16  LATYPTLWLDTEVADWQTSNPRLSLIQILADPTDRTGDRAYIFDVLDNPDIVRDFVAQIM 75

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLT---RTYTNQHG---LKDNL 123
           V+   EK+FH   FD+  L      + + V CT K+  +LT   R    Q     LK   
Sbjct: 76  VNPNIEKVFHNASFDLKFLG--GKHQAQNVTCTFKLVRKLTKKSRKTPLQVSNKQLKTLA 133

Query: 124 KELLGI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
            EL    N+ K +QSSDW    L+ +QL YA  D V+L  +   
Sbjct: 134 VELCHFTNVDKTEQSSDWGQRPLTPKQLHYAKMDTVYLAHVHRH 177


>gi|28493361|ref|NP_787522.1| ribonuclease D [Tropheryma whipplei str. Twist]
 gi|28476402|gb|AAO44491.1| ribonuclease D [Tropheryma whipplei str. Twist]
          Length = 391

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 12/189 (6%)

Query: 21  DAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              A+DTE        ++   +VQL        I   +    N   L  ++  E+   + 
Sbjct: 37  GPFAIDTERANRFKYDQEFPWLVQLYRRPTGCFIFDTSKI-DNLSKLGDLIGSEEV--VI 93

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    DI  L    G+ +  +F T+IA RL      +  L    ++ + + + K   + +
Sbjct: 94  HAAINDIKSLKR-VGIHITNLFDTEIACRLLN--IPKVNLSYVTEKFINVKLRKEYSTVN 150

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN--FLMDRAELDLLG 197
           WSA  L+ + L+YA  DV HL  L       L+   + ++A    +  F++ + + ++  
Sbjct: 151 WSARPLNKKYLEYAEGDVKHLLDLSQALKTALRAENKLEIAKEEFSHVFMVVKHQSEI-- 208

Query: 198 WENVDIFSH 206
            + +D F H
Sbjct: 209 -DKLDKFCH 216


>gi|323144458|ref|ZP_08079061.1| putative ribonuclease D [Succinatimonas hippei YIT 12066]
 gi|322415773|gb|EFY06504.1| putative ribonuclease D [Succinatimonas hippei YIT 12066]
          Length = 384

 Score =  125 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 11/172 (6%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D I++DTE + +      L ++QL   + T  +  +A   K+   LV  L + K   +  
Sbjct: 31  DFISLDTEFVRINTLFPILGLLQLRFKNETYLVDPVALNIKD---LVRTLTETKAAVLIF 87

Query: 81  YGRFDIAVL---FYTFGV---RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
            G  D+ +L       G      + V+  ++ +     +    GL   +KEL+G  + K 
Sbjct: 88  SGDEDLEILVKIARDNGFASLLPQKVYDLQLLAAF-DDFLYGKGLNAYVKELVGAELEKD 146

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
              +DW    LS+ QL YAA DV +L  +     +++    R     +    
Sbjct: 147 CTRTDWLYRPLSENQLIYAALDVEYLEEMYKLLYKRID-EKRFSYFLAEMEL 197


>gi|302803751|ref|XP_002983628.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
 gi|300148465|gb|EFJ15124.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
          Length = 201

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 5/163 (3%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+    +       AVDTE   +        ++Q+S       I  IA        L  
Sbjct: 42  EDLAEVLSEE--SEFAVDTEQHSIRSFLGFTALIQISTYKRDYLIDAIAL-HDEMEILRP 98

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +  +    K+FH    DI  L   F + V  +F T  A  +      Q  L   L+    
Sbjct: 99  VFANAAICKVFHGADSDILWLQRDFHIYVVNLFDTARACDVLGK--PQRSLAYLLQTYCN 156

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           I+ +KA Q SDW    L ++ L YA +D   L  +  +   +L
Sbjct: 157 ISTNKAFQKSDWRQRPLPEDILLYARTDAHFLLYIARKLYSEL 199


>gi|28572529|ref|NP_789309.1| ribonuclease [Tropheryma whipplei TW08/27]
 gi|28410661|emb|CAD67047.1| putative ribonuclease [Tropheryma whipplei TW08/27]
          Length = 360

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 12/189 (6%)

Query: 21  DAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
              A+DTE        ++   +VQL        I   +    N   L  ++  E+   + 
Sbjct: 6   GPFAIDTERANRFKYDQEFPWLVQLYRRPTGCFIFDTSKI-DNLSKLGDLIGSEEV--VI 62

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H    DI  L    G+ +  +F T+IA RL      +  L    ++ + + + K   + +
Sbjct: 63  HAAINDIKSLKR-VGIHITNLFDTEIACRLLN--IPKVNLSYVTEKFINVKLRKEYSTVN 119

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN--FLMDRAELDLLG 197
           WSA  L+ + L+YA  DV HL  L       L+   + ++A    +  F++ + + ++  
Sbjct: 120 WSARPLNKKYLEYAEGDVKHLLDLSQALKTALRAENKLEIAKEEFSHVFMVVKHQSEI-- 177

Query: 198 WENVDIFSH 206
            + +D F H
Sbjct: 178 -DKLDKFCH 185


>gi|319441607|ref|ZP_07990763.1| hypothetical protein CvarD4_07546 [Corynebacterium variabile DSM
           44702]
          Length = 459

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 71/181 (39%), Gaps = 11/181 (6%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           AE  A     +AVDTE        DR  +VQL        ++  A        L  +L D
Sbjct: 35  AEVLATGSGPVAVDTERASGFRFDDRAWLVQLRRAGAGTHLVDPAVVPDAGELLAPVLND 94

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
                + H    D+  L  T G     +  T+IA RL      Q GL   L+ELLG+ ++
Sbjct: 95  --LPWVLHAAHTDLPAL-TTLGWHTPLLHDTQIAGRLLGFG--QIGLAGMLEELLGVTVA 149

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHA----LRLQFTEKLQRLG--RSDLATSCCNF 186
           K +   DWSA  L  + L YAA DV  L         +   + +  G  R       C+ 
Sbjct: 150 KDKGREDWSARPLPADMLTYAALDVELLVELLATAMSRLRRRSEAEGLDRVGWYRQECDH 209

Query: 187 L 187
           +
Sbjct: 210 V 210


>gi|255325116|ref|ZP_05366222.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
 gi|255297681|gb|EET76992.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
          Length = 414

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 10/189 (5%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
                A+DTE        DR  +VQ+   G GT+        ++    L  +L     E 
Sbjct: 32  GTGPFAIDTERASGYRYDDRAFVVQIRRRGAGTMLFAPEGHREELTAALAPVL--NGTEW 89

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+  L    G+    +F T++A+RL      +  L   + EL  + + K    
Sbjct: 90  IIHAAHSDLPCLG-WLGLFPGSIFDTELAARLAG--FERPNLGTMVAELFDVELEKGYGD 146

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL- 196
           +DWS   LS+E   YAA DV  L  L     + L    + D A    + ++     D   
Sbjct: 147 ADWSTPQLSEELKAYAALDVELLLELADALRDILAEQDKMDWALEEFSAIVQEHSGDFAP 206

Query: 197 ---GWENVD 202
               W ++ 
Sbjct: 207 QPHTWRDLK 215


>gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 586

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 83/223 (37%), Gaps = 26/223 (11%)

Query: 1   MTTIRVHEGDIPAE-CAARYVDAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDII 54
           M        ++ A     + +  + +DTE        +    D++ ++Q+   +    I 
Sbjct: 1   MVNYITQSKELTALKEKLKDLPYVYLDTEVAVKDFEKVDYFNDKVRLIQIGTQEDIFVID 60

Query: 55  RIAAGQKNA-PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                +      L  +L  +    + H  +FD+  L   F V  + VF T IAS++    
Sbjct: 61  AFKVERDTLKEFLKEVLESKGI--VGHNLKFDLKFLATNFDVYPKVVFDTFIASKILAKG 118

Query: 114 TNQ--HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            N   H L      L    + K  Q+S W  ++L+ EQ++Y+A D+  L ++  +   +L
Sbjct: 119 DNSQKHSLSAVAVRLTDEEVDKTYQTSPWWVENLTKEQIEYSAKDIEVLRSIFREQVVRL 178

Query: 172 QRL-------GRS--------DLATSCCNFLMDRAELDLLGWE 199
                     G +         +A     FL     ++L G  
Sbjct: 179 NEEQTHLKSSGETYKVFGVVNPVAALEMAFLPCLVSIELSGIP 221


>gi|229817486|ref|ZP_04447768.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM
           20098]
 gi|229785275|gb|EEP21389.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM
           20098]
          Length = 430

 Score =  124 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 8/165 (4%)

Query: 28  ETLGLMPRRDRLCIVQL---SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           E            +VQ      G    D I + A   +       + D     I H    
Sbjct: 43  ERASGFRYGHEDWLVQFKREGVGIFLFDPIALTAAGADWGRFNRAVGDA--TWIIHDAMM 100

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
           D+       G+  + +F T++A+R+     ++ GL    +  LGI ++K   ++DWS   
Sbjct: 101 DLPGFAQ-IGMTPQRLFDTEMAARMLG--LSRFGLAAVTERYLGITLAKEHSAADWSYRP 157

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           L  +   YAA DV  L  L  +    L+  G+ + A      ++ 
Sbjct: 158 LPRDWRNYAALDVELLIELERKMRADLKASGKEEWAEEEFRHILA 202


>gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 532

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 9/173 (5%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85
           DTET  L  R  ++ ++  S G   V              L  +L D+   K+FH  +FD
Sbjct: 10  DTETDSLDFRTGKIKLIAFSKGLNEVV-----TTTSVDERLKSILNDKNIIKVFHNAKFD 64

Query: 86  IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD-WSADD 144
           +       G RV    CT + +++      +  LK   K+ L +++ K+ Q SD W   +
Sbjct: 65  VGFFQSK-GYRVNNYHCTLLMAQVLGE--EKLSLKALAKKYLDVDMDKSMQHSDNWQETE 121

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           ++ E + YA  DV H  AL  +  + L       +       L     L+  G
Sbjct: 122 ITQEHIDYAVKDVEHTRALYYKLLDLLVENNLLTVYERERRALPAIVMLESNG 174


>gi|323453102|gb|EGB08974.1| hypothetical protein AURANDRAFT_63530 [Aureococcus anophagefferens]
          Length = 549

 Score =  124 bits (312), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 65/167 (38%), Gaps = 14/167 (8%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
             VD   VD E           C+VQ+S  D    +  +A  +     L     D    K
Sbjct: 224 EGVDVFGVDLEAHAEHSYESIACLVQISTADVDYVVDALAL-RFELRALAPAFADPNIRK 282

Query: 78  IFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHGLKDNLKELLGI------ 129
           +FH  +  DI  L   FG+ V  VF T+ A+R   R      GL        G+      
Sbjct: 283 VFHACQGVDIPRLQRDFGIFVVNVFDTQEAARCAARVLGAPLGLVALYAS-AGVISTARR 341

Query: 130 ----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               ++ +A Q+ DW +  LS  QL+YA  D  HL  L      +L+
Sbjct: 342 DELESLKRAYQNCDWRSRPLSPAQLEYAVCDARHLVDLEAYLNRELR 388


>gi|306836261|ref|ZP_07469243.1| ribonuclease D [Corynebacterium accolens ATCC 49726]
 gi|304567853|gb|EFM43436.1| ribonuclease D [Corynebacterium accolens ATCC 49726]
          Length = 406

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 13/198 (6%)

Query: 13  AECAAR---YVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVG 68
           AE AAR      A A+DTE        DR  ++Q+   G GT+         + A  L  
Sbjct: 23  AEAAARLQAGTGAFAIDTERASGYRYDDRAFLIQIRRRGAGTMLFAPEGHRAELAQALAP 82

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L  +    I H    D+  L    G+    +F T++A+R   T   +  L   + EL  
Sbjct: 83  VLNGQH--WIIHAAPSDLPSLG-WLGLFPGTLFDTELAARF--TGFPRTNLGAIIAELFD 137

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           + + K     DWS   LS+E   YAA DV  L  L     + L    + +     C  ++
Sbjct: 138 VQLGKGHGDDDWSIPQLSEEMRAYAALDVELLLELATTLRDILAEQEKLEWMLEECAAIV 197

Query: 189 DRAELDLL----GWENVD 202
            +   D       W ++ 
Sbjct: 198 AKHAHDTSPQPGSWRDIK 215


>gi|307154950|ref|YP_003890334.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
 gi|306985178|gb|ADN17059.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
          Length = 305

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 13/166 (7%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQL------SPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           +  + +DTE      ++ RL ++Q+        G  T  I  +    +    +  ++ +E
Sbjct: 20  LKILWLDTEVADFKSQKPRLSLIQMLAYPQDKDGSRTFIIDVLNKRDEVDYFIEKIMSNE 79

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG---LKDNLKELLG-I 129
           +  K+FH  + D+  L    G + + + CT   ++    +        LK   + L    
Sbjct: 80  QINKVFHNAQHDLKFL---GGKKAQNITCTMKLAQSIPYHILPVSSLTLKTLTEHLTEFK 136

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           N+SK +Q SDW    LSD+QL YA  D ++L  +  +  E +++  
Sbjct: 137 NVSKEEQGSDWGQRPLSDQQLHYAKMDPIYLAHIHQKLLELIKKNN 182


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 81/244 (33%), Gaps = 48/244 (19%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I   E  + A         + +D ET GL P    + ++Q++  +  V +I    G  N 
Sbjct: 50  ISDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLIQIAAPNRPVILIEF-RGITNK 108

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV--RPVFCTKIASRLT----------- 110
             L   +   K  K+ H   F+I  L    G+         T + S+L            
Sbjct: 109 ETLRRFIEHPKIPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEED 168

Query: 111 --------------------------RTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
                                     R     + L   +   LG ++ K+ Q SDW    
Sbjct: 169 AKTGVLPIPDLTRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGK-P 227

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE-------LDLLG 197
           L+ EQLQYAA+D   +  LR     K+     +D        L   A+       LDL  
Sbjct: 228 LTQEQLQYAANDAAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLDLDR 287

Query: 198 WENV 201
           W  +
Sbjct: 288 WGEL 291


>gi|311739578|ref|ZP_07713413.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305394|gb|EFQ81462.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 414

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 10/189 (5%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
                A+DTE        DR  +VQ+   G GT+        ++    L  +L     E 
Sbjct: 32  GTGPFAIDTERASGYRYDDRAFVVQIRRRGAGTMLFAPEGHREELTAALAPVL--NGAEW 89

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H    D+  L    G+    +F T++A+RL      +  L   + EL  + + K    
Sbjct: 90  IIHAAHSDLPCLG-WLGLFPGSIFDTELAARLAG--FERPNLGTMVGELFDVELEKGYGD 146

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLL- 196
           +DWS   LS+E   YAA DV  L  L     + L    + D A    + ++     D   
Sbjct: 147 ADWSTPQLSEELKAYAALDVELLLELADALRDILAEQDKMDWALEEFSAIVQEHSGDFAP 206

Query: 197 ---GWENVD 202
               W ++ 
Sbjct: 207 QPHTWRDLK 215


>gi|790213|gb|AAB65809.1| ORFQ [Dichelobacter nodosus]
          Length = 289

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           + H    D+  L +  G  +  +F  T+I   L   +         ++  LGI++ K++ 
Sbjct: 10  VIHAASQDLE-LMHLHGQLLPNMFRDTQIGFSLISPH-KAISYLGFVQHYLGIDLDKSET 67

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
            SDW A  L++EQ QYAA+DV  L          LQRL R       C  L+
Sbjct: 68  RSDWLARPLTNEQCQYAANDVGLLLQAYPLLCADLQRLNRMHWWQEECQNLL 119


>gi|118379200|ref|XP_001022767.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89304534|gb|EAS02522.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 722

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 7/151 (4%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + +DTE          LC++Q+S    D  +D++ I + Q     L  + + +   KIF+
Sbjct: 47  LGIDTEQSFAKTYEGFLCLIQISTDQNDYLIDVLGINSKQGINECLSKVFLCKDIIKIFY 106

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ----Q 136
            G+ DI  L   F + V   F  K  +   +   +   L   +       + K +    Q
Sbjct: 107 AGQQDILWLKRDFDLSVVNYFDVKECASFLKKSDDN-SLIQLIDRYCNYKLDKQKKKELQ 165

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            S+WS   LS EQL YAA D  +L  +R + 
Sbjct: 166 VSEWSNRPLSKEQLDYAALDSHYLIKIRYEL 196


>gi|240949173|ref|ZP_04753520.1| ribonuclease D [Actinobacillus minor NM305]
 gi|240296476|gb|EER47112.1| ribonuclease D [Actinobacillus minor NM305]
          Length = 121

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 3   TIRVH----EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
           TI  H       +   C  A    AIA+DTE + +     +L ++QL  G+    I    
Sbjct: 4   TIHYHWVSTSQQLDEVCQKAANKKAIALDTEFIRIRSFYPQLGLIQLFDGEQVSLIDP-- 61

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
              ++  + + +L +    K+ H    D+ V  Y F     P+  T++ +      
Sbjct: 62  NSIEDFSSFIALLANPDVIKVLHACSEDLEVFEYRFKQLPTPLVDTQVVAGFLNKG 117


>gi|321452793|gb|EFX64106.1| hypothetical protein DAPPUDRAFT_66464 [Daphnia pulex]
          Length = 181

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I VD E       R   C++Q+S       I  +       P L  +  D    KIF  
Sbjct: 61  VIGVDLEHHSDRSYRGITCLMQISTDKTDYIIDTLKLWDHLQP-LNKVFCDPNIVKIFQG 119

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L   FG+ V  +F T  A+ L        GL   L+    +++ K  Q  DW 
Sbjct: 120 ADSDVIWLQRDFGIYVVNLFDTFQAASLLGFQKK--GLSFLLQHYCQVHVDKKYQLEDWR 177

Query: 142 ADDL 145
              L
Sbjct: 178 IRPL 181


>gi|227503491|ref|ZP_03933540.1| ribonuclease D [Corynebacterium accolens ATCC 49725]
 gi|227075994|gb|EEI13957.1| ribonuclease D [Corynebacterium accolens ATCC 49725]
          Length = 406

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 13/198 (6%)

Query: 13  AECAAR---YVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVG 68
           AE AAR        A+DTE        DR  ++Q+   G GT+         +    L  
Sbjct: 23  AEAAARLQAGTGPFAIDTERASGYRYDDRAFLIQIRRRGAGTMLFAPEGHRAELTQALAP 82

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L  +    I H    D+  L    G+    +F T++A+R    +  +  L   + EL  
Sbjct: 83  VLNGQH--WIIHAAPSDLPSLG-WLGLFPGTLFDTELAARFAGFH--RTNLGAIIAELFD 137

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
           + + K     DWS   LS+E   YAA DV  L  L     + L    + D     C  ++
Sbjct: 138 VQLEKGHGDDDWSIPRLSEEMRAYAALDVELLLELATTLRDILAEQEKLDWMVEECAAIV 197

Query: 189 DRAELDLL----GWENVD 202
            +   D       W ++ 
Sbjct: 198 AKHANDTAPQPHSWRDIK 215


>gi|321452292|gb|EFX63714.1| hypothetical protein DAPPUDRAFT_66837 [Daphnia pulex]
          Length = 181

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I VD E       R   C++Q+S       I  +       P L  +  D    KIF  
Sbjct: 61  VIGVDLEHHSDRSYRGITCLMQISTDKTDYIIDTLKLWDHLQP-LNKVFCDPNIVKIFQG 119

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L   FG+ V  +F T  A+ L        GL   L+    +++ K  Q  DW 
Sbjct: 120 ADSDVIWLQRDFGIYVVNLFDTFQAASLLGFQKK--GLSFLLQHYCQVHVDKKYQLEDWR 177

Query: 142 ADDL 145
              L
Sbjct: 178 IRPL 181


>gi|167533742|ref|XP_001748550.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773069|gb|EDQ86714.1| predicted protein [Monosiga brevicollis MX1]
          Length = 471

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 21/188 (11%)

Query: 27  TETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI 86
           TE +     R +L ++Q+        +   A  +     L  +L  ++   I H G+ D+
Sbjct: 101 TEFVHFPMYRPKLEVLQIGTETTLAAVDCAAYTKAQLKELTRVLAQKEI--ILHSGQTDL 158

Query: 87  AVLFYTFGVRVRPVFCTKIA--------------SRLTRTYTNQHGLKDNLKELL-GINI 131
            +L       +  VF T++A              +       N  GL D +  +   + +
Sbjct: 159 DLLTEVNEAPLERVFDTQLAYLINATLFIRNPQVAANLLGIRNTIGLADLVTHMFPEVKM 218

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL---- 187
            K Q  SDW    L+DEQL YA SDV HL  +R +  + L   G           L    
Sbjct: 219 DKGQALSDWRVRPLNDEQLLYAISDVEHLIEMRHRLQDALSARGVEAWFQEDMRTLLTPR 278

Query: 188 MDRAELDL 195
              A+ DL
Sbjct: 279 PTPADEDL 286


>gi|321465548|gb|EFX76549.1| hypothetical protein DAPPUDRAFT_55085 [Daphnia pulex]
          Length = 181

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I VD E       R   C++Q+S       +  +       P L  +  D    KIF  
Sbjct: 61  VIGVDLEHHSDRSYRGITCLMQISTEKTDYIVDTLQLWDHLQP-LNEVFCDPTIVKIFQG 119

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L   FG+ V  +F T  A+ L        GL   L+    +++ K  Q  DW 
Sbjct: 120 ADSDVIWLQRDFGIYVVNLFDTFQAASLLGFQKK--GLSFLLQHYCQVHVDKKYQLEDWR 177

Query: 142 ADDL 145
              L
Sbjct: 178 IRPL 181


>gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
 gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
          Length = 682

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 13/192 (6%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           +P    A     + +D ET GL P +DR  ++ LS    T  +   A        L  + 
Sbjct: 140 LPPRLMA--APVLGLDLETTGLDPHQDRPRLLSLSTERDTYLVDLFALPHA-LEALRPLF 196

Query: 71  VD-EKREKIFHYGRFDIAVLFYTFGVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
                   + H  +FD+A L    G+    R ++CT +A ++    +    L D +    
Sbjct: 197 EAKTGPVLVGHNLKFDLAFLLKA-GLWPEGRRLWCTGLAHQVIHARSRMPALADLV---- 251

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
              + K  Q+SDWS   +S+ QL YAA D   L  L  Q  E+ +RLG   +       L
Sbjct: 252 -PGLDKRLQTSDWSG-PISEAQLAYAARDTQVLLPLYHQQQEESRRLGIGKVLEIESRAL 309

Query: 188 MDRAELDLLGWE 199
              A + L+G  
Sbjct: 310 PAVAWMGLMGVP 321


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 4/164 (2%)

Query: 23   IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            + +D ET GL   RDR+ ++ L+   GT  +   A     A     +      E +    
Sbjct: 915  VGLDLETTGLSHARDRVRLLSLATPSGTFLVDLFALPDPAAALAPLLEALTAVEVVGQNL 974

Query: 83   RFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--TNQHGLKDNLKELLGINISKAQQSSDW 140
             FD+  L    G     V  T +AS++      T  H LKD     LG+ + K  Q++DW
Sbjct: 975  GFDLPFLMR-LGFVPGRVRDTMLASQVLHAGNRTTGHSLKDLAHRHLGLELDKGLQTADW 1033

Query: 141  SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            S   L+D  L YAA D     AL  +   +L     +  A +  
Sbjct: 1034 SG-PLTDAHLGYAARDAELPLALWERLAPELAAAHLTGTAEAEM 1076


>gi|218439906|ref|YP_002378235.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
 gi|218172634|gb|ACK71367.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
          Length = 308

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 92/232 (39%), Gaps = 34/232 (14%)

Query: 5   RVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVD---IIRIAA 58
                DI A       V  + +DTE+  L  ++ RL ++Q+   P D       I  +  
Sbjct: 4   FTQSEDIQALIDDLTEVKILWLDTESTDLNSKKSRLSLIQVLAYPEDTNGSRTYIFDVLD 63

Query: 59  GQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---T 114
                   +  ++V+++  KIFH  + D+  L    G + + V CT   S+    +    
Sbjct: 64  NPDIVDYFIEKIMVNDQINKIFHNAQHDLQFL---GGKKAKNVTCTLKLSKTIPYHILPV 120

Query: 115 NQHGLKDNLKELLG-INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK--- 170
             H LK   + L    N+SK +Q+SDWS   LS +QL YA  D V+L  +  +  E    
Sbjct: 121 PNHTLKTLTEYLTDFKNVSKEEQTSDWSQRPLSQKQLDYAKMDPVYLAHIHGRLLELNQQ 180

Query: 171 ---------LQRLGR--------SDLATSCCNFLMDRAELDLLGWENVDIFS 205
                    L  +G+          L  S  + L  RA+  +      + F+
Sbjct: 181 SNPDPNQDNLTEIGKRYQEIKPEWQLLKSEIDNLETRAKNAMKAQNQTENFA 232


>gi|62088052|dbj|BAD92473.1| exosome component 10 isoform 2 variant [Homo sapiens]
          Length = 431

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            AVD E           C++Q+S       II     + +   L   L D    K+FH  
Sbjct: 309 FAVDLEHHSYRSFLGLTCLMQISTRTEDF-IIDTLELRSDMYILNESLTDPAIVKVFHGA 367

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             DI  L   FG+ V  +F T  A+RL      +H L   LK    ++ +K  Q +DW  
Sbjct: 368 DSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRI 425

Query: 143 D 143
            
Sbjct: 426 R 426


>gi|118566802|gb|ABL01720.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 151

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
             P+  T+I +          G    ++E  G+ + K++  +DW A  LS+ Q +YAA+D
Sbjct: 1   PEPLIDTQILAAFC-GRPLSWGFASMVEEYTGVALDKSESRTDWLARPLSERQCEYAAAD 59

Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           V +L  +  +   + +  G    A   C  +  R +
Sbjct: 60  VWYLLPIAKKLMIETEAAGWLPAALDECRLMQQRRQ 95


>gi|321465391|gb|EFX76392.1| hypothetical protein DAPPUDRAFT_55156 [Daphnia pulex]
          Length = 181

 Score =  119 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I VD E       R   C++Q+S       +  +       P L  +  D K  KIF  
Sbjct: 61  VIGVDLEHHSERSYRGITCLMQISTDKTDYIVDTLQLWDHLQP-LNEVFCDPKIVKIFQG 119

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS 141
              D+  L   FG+ V  +F T  A+ L      +  L   L+    ++++K  Q  DW 
Sbjct: 120 ADSDVIWLQRDFGIYVVNLFDTFQAATLLG--FEKKSLSFLLQHYCQVHVNKKYQLEDWR 177

Query: 142 ADDL 145
              L
Sbjct: 178 IRPL 181


>gi|149919604|ref|ZP_01908083.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
 gi|149819547|gb|EDM78975.1| ribonuclease D, putative [Plesiocystis pacifica SIR-1]
          Length = 386

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-------LVGML 70
           R    +A+D+E+  +   R+R+C++QL+       +  +A    +          L   L
Sbjct: 24  RDAAWVALDSESNSMFAYRERVCLLQLNVAGALFLVDTLALAGDSGEPRAEALAALAEPL 83

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                    H G +D+A L   FG+ +  +F T+ A+       ++ G    ++ +    
Sbjct: 84  ASPSLRLWIHGGEYDVACLKRDFGIALGGLFDTQQAASFLG--WSRTGYAAVVEAVCEQK 141

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           + KA +  DW    +  + L+YA  DVVHL  +  +   ++      +
Sbjct: 142 LPKAHKQHDWGRRPIDAKALRYALDDVVHLPRVGRELEARIGAADLDE 189


>gi|326431455|gb|EGD77025.1| hypothetical protein PTSG_07367 [Salpingoeca sp. ATCC 50818]
          Length = 848

 Score =  118 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 9/160 (5%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A +    +AVD E   +   +   C++Q+S       I  +A  + +   L   L     
Sbjct: 278 ALKGEREVAVDLEAHNVRSYQGFTCLMQVSTRTRDFLIDTLAL-RGHLEVLNECLC---- 332

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
             + H    DI  L    G+ +  +F    A R+      ++ L   LK L  +++ K  
Sbjct: 333 --VLHGADSDILWLQRDHGLYIVCLFVCLFAMRVLGY--PKYSLAYLLKHLFHLSLDKRH 388

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q SDW    L  +   YA +D  +L         +L   G
Sbjct: 389 QLSDWRIRPLPADMCVYAQADTHYLLDAHDALKAELLERG 428


>gi|282899917|ref|ZP_06307878.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195187|gb|EFA70123.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 317

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 13/163 (7%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP------GDGTVDIIRIAAGQKNAPNLVGML 70
                ++ +DTE         RL ++Q+        G+       +     +   +  ++
Sbjct: 17  LAKCKSLWLDTEIADWNTPCPRLSLIQVLANPTDLIGEFAYIFDVLDKPDISTYFISQIM 76

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTR--TYTNQHGLKDNLKELL 127
           VD + +K+FH   FD+  L        + V CT K+A ++      T    LK    EL 
Sbjct: 77  VDVQIQKVFHNADFDLKYLGKN---SAKNVTCTFKVAKKIGHRILQTTNLKLKTLAVELC 133

Query: 128 GI-NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
              ++ K   +SDW    L ++QL+YAA D V+L A+  +  E
Sbjct: 134 HFSDVDKEGGASDWGKRPLCEKQLKYAAMDTVYLAAVHRRLME 176


>gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia]
          Length = 733

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 9/161 (5%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP---NLVGMLVDEKREK 77
             I VD E    +    ++ IVQ+   +    I  I  G  N         +  D+K  K
Sbjct: 58  SIIGVDIEHTNDIGFDGQISIVQIKDDEDVYIIDVIEIGVDNQKLINVFKQIFEDDKIIK 117

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135
           +F+ G  D+  L   F + ++  F  K  +   +   ++  L    K+     +SK+   
Sbjct: 118 VFYAGSTDVLWLKRDFQITIQNFFDIKEVADECK--LSKISLIFLWKQYCDHQVSKSYKT 175

Query: 136 --QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
             Q+SDW+   L+ EQL YAA D  +L  LR    E+L + 
Sbjct: 176 NMQTSDWAERPLTQEQLIYAAYDCYYLPYLRYVLLEELSKA 216


>gi|126641731|ref|YP_001084715.1| ribonuclease D [Acinetobacter baumannii ATCC 17978]
          Length = 318

 Score =  115 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHG 118
              +     + + ++   IFH    DI ++++      +  VF T++       +  Q  
Sbjct: 3   LDLSEFWKKIFLAQQ--NIFHACGEDIDLIYHYADEQNLLNVFDTQVGLSFL-GHGLQVS 59

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            +  LK  L I+I K Q  SDW A  LS +QL YAA+DV++L  L     ++L++ G  +
Sbjct: 60  YQGALKLCLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGLYE 119

Query: 179 LATSCCNFLM 188
                C+ L 
Sbjct: 120 YVLEDCSSLT 129


>gi|255550866|ref|XP_002516481.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223544301|gb|EEF45822.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 342

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 21/197 (10%)

Query: 4   IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +      +PAE      D    I  D E + L      LCI+Q++  D    +     G+
Sbjct: 37  VVTDASQLPAEFLNPTPDKQLIIGFDCEGVDLCRH-GTLCIMQIAFPDAIFLVDATQGGE 95

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---- 116
                    L      K+ H  + D   L++ FG+++  VF T+IA  L      +    
Sbjct: 96  MLLKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVFDTQIAYSLIEEQEGRTKLP 155

Query: 117 ---HGLKDNLK--ELLGIN-ISKAQ------QSSD-WSADDLSDEQLQYAASDVVHLHAL 163
                    L      GI+ + K +      Q S+ W+   LS+  ++ AA DV  L  +
Sbjct: 156 DDYISFVGLLADPRYCGISYLEKEEVRLLLRQDSNFWTYRPLSELMIRAAADDVRFLLYI 215

Query: 164 RLQFTEKLQRLGRSDLA 180
             +  +KL +     LA
Sbjct: 216 YHKMIKKLNQRSLWYLA 232


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 82/244 (33%), Gaps = 48/244 (19%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I+  E  + A         + +D ET GL P    + ++Q++  +  V +I       + 
Sbjct: 50  IKDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLIQIAAPNRPVILIEF-RSITHK 108

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV--RPVFCTKIASRLT----------- 110
            +L   +   K  K+ H   F+I  L    G+         T + ++L            
Sbjct: 109 ESLRRFIEHHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDD 168

Query: 111 --------------------------RTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
                                     R     + L       LG ++ K+ Q SDW    
Sbjct: 169 IKAGVLPIPNLNQSIKNKKKLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGK-P 227

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE-------LDLLG 197
           L+ EQLQYAA+D   +  LR  F  K+     +D        L   A+       LDL  
Sbjct: 228 LTQEQLQYAANDAAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMGLMGMGLDLDR 287

Query: 198 WENV 201
           W  +
Sbjct: 288 WGEL 291


>gi|219118334|ref|XP_002179944.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408997|gb|EEC48930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 700

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 61/162 (37%), Gaps = 11/162 (6%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79
           A+A D E+          C++QLS   G   +I   A         L  +  D    K+ 
Sbjct: 257 ALAFDVESYNKSKYTQLTCLLQLSTDHGMAYVIDPLAPGVFEEVGGLAPIFADPDIVKVG 316

Query: 80  HY-GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL------LGINIS 132
           H  G  D+  L   FG+ V   F T  A+++       HGL    +        L  ++ 
Sbjct: 317 HSIGGLDVRSLHRDFGIFVINAFDTYEAAKVLC--LESHGLAAVCEHYGMKYTDLYKSLK 374

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
              Q+ DW A  L+   +QY   DV  L  LR+     L + 
Sbjct: 375 NEYQTCDWRARPLTGPMIQYGRFDVHFLIELRMLMIRDLTKT 416


>gi|222618694|gb|EEE54826.1| hypothetical protein OsJ_02264 [Oryza sativa Japonica Group]
          Length = 504

 Score =  114 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 78/207 (37%), Gaps = 27/207 (13%)

Query: 4   IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +    G +P E     A     I  D E + L      LCI+Q++  D    +  I  G+
Sbjct: 200 VVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDLCRHGA-LCIMQIAFPDAVYLVDAIEGGK 258

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113
           +        L  E   K+ H  + D   L++ FG+++  V  T+IA  L        R Y
Sbjct: 259 ELIEACKPALESEYVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLLEEQEGKKRGY 318

Query: 114 TNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHAL 163
                    L      G+    K +  +    D   W+   LS+  ++ A  DV  L ++
Sbjct: 319 DEYISFVSLLADPRYCGMAYPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSI 378

Query: 164 RLQFTEKLQRLG------RSDLATSCC 184
             +  EKL ++       RS+L   C 
Sbjct: 379 HEKMMEKLSKVSLWRLSVRSELYCRCF 405


>gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1]
 gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax]
          Length = 1860

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 5/178 (2%)

Query: 24   AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81
             +D ET GL    +++ ++Q++  D  V I  +    K      L  +L +EK  KI   
Sbjct: 1312 GLDIETTGLEVFDEKIRLIQIAVEDYPVIIYDMFNITKESILTGLREVLKNEKVVKIIQN 1371

Query: 82   GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSD 139
            G+FD   L +     V  +F T IAS+L     N +G K  + +++ L + + K QQ+S 
Sbjct: 1372 GKFDAKFLMHN-KFEVANIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQQNSV 1430

Query: 140  WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
            W+   L++ QL YAA D   L  L  +   ++ R     +       ++   +++L G
Sbjct: 1431 WNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICRENMGTVNDIENKCILPICDMELNG 1488


>gi|327394110|dbj|BAK11532.1| ribonuclease D Rnd [Pantoea ananatis AJ13355]
          Length = 274

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           +  T+I +  +       G    +     + + K++  +DW A  L++ Q QYAA+DV +
Sbjct: 1   MIDTQILAAFS-GQPLSWGFASMVAHFTQVELDKSEARTDWLARPLTERQCQYAAADVHY 59

Query: 160 LHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGWEN 200
           L  +  Q  ++++++G    A S C  L  R  LD L  E+
Sbjct: 60  LLPIAHQLMQQVEQVGNMAAALSECENLCQR-RLDSLAPED 99


>gi|297825683|ref|XP_002880724.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326563|gb|EFH56983.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 342

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 79/221 (35%), Gaps = 24/221 (10%)

Query: 4   IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           I      +PA+      +    I  D E + L     +LCI+Q++  +    +  I  G+
Sbjct: 36  IVTDPLQLPADFLNPSPEKKLVIGFDCEGVDLCRH-GKLCIMQIAFSNAIYLVDVIEGGE 94

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113
                    L      K+ H  + D   L++ FG+R+  V  T+IA  L        R  
Sbjct: 95  VLMKACKPALESTYITKVIHDCKRDSEALYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPL 154

Query: 114 TNQHGLKDNLK--ELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHAL 163
            +       L      GI+  + ++       D   W+   +++  ++ AA DV  L  L
Sbjct: 155 DDYISFVSLLADPRYCGISYEEKEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYL 214

Query: 164 RLQFTEKLQRLGRSDLA---TSCCNFLMDRAELDLLGWENV 201
             +   KL +     LA      C  L    + D   W  V
Sbjct: 215 YHKMMGKLNQRSLWHLAVRGALYCRCLCCMNDADFADWPTV 255


>gi|147856691|emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera]
          Length = 951

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 34/164 (20%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           ++    + + V   AVDTE   L        ++Q+S  +    +  IA        L  +
Sbjct: 124 ELADVLSKQRV--FAVDTEQHSLRSFLGFTALIQISTQNEDYLVDTIAL-HDTLDVLQPV 180

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
             +    K+FH    D+  L   F + V  +F T                          
Sbjct: 181 FANPSICKVFHGADNDVLWLQRDFHIXVVNLFDT-------------------------- 214

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
                 +  DW    LS E L+YA +D  +L  +      +L++
Sbjct: 215 -----AKREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQ 253


>gi|225429426|ref|XP_002276186.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147856945|emb|CAN82846.1| hypothetical protein VITISV_007988 [Vitis vinifera]
 gi|296081603|emb|CBI20608.3| unnamed protein product [Vitis vinifera]
          Length = 341

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 72/197 (36%), Gaps = 21/197 (10%)

Query: 4   IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           I      +P E      +    I  D E + L      LCI+Q++  D    +  I  G+
Sbjct: 36  IVTLPSQLPIEFLEPSPERKLVIGFDCEGVDLCRH-GTLCIMQIAFPDAIYLVDAIQGGE 94

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---- 116
                    L      K+ H  + D   L++ FG+++  V  T+IA  L      +    
Sbjct: 95  MLMKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRLV 154

Query: 117 ---HGLKDNLK--ELLGIN-ISKAQ------QSSD-WSADDLSDEQLQYAASDVVHLHAL 163
                    L      G++ + K +      Q+ D W+   LSD  ++ AA DV  L  +
Sbjct: 155 DDYISFVGLLADPRYCGVSYLEKQEVRDLLRQNPDFWTHRPLSDLMVRAAADDVRFLLYI 214

Query: 164 RLQFTEKLQRLGRSDLA 180
             +  EKL       LA
Sbjct: 215 YHKMMEKLNERSLWYLA 231


>gi|90408161|ref|ZP_01216329.1| ribonuclease D [Psychromonas sp. CNPT3]
 gi|90310691|gb|EAS38808.1| ribonuclease D [Psychromonas sp. CNPT3]
          Length = 296

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             D+ ++    G     +F T++A           G    ++ L G+ + K +  +DW  
Sbjct: 2   SEDLEIIRDHKGDLNIRLFDTQVACAFLN-LGASLGYAKMVETLQGVIVDKGESRTDWCK 60

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             L+++Q+ YAA DV+HL     +   +L            C  ++
Sbjct: 61  RPLTEKQVDYAAIDVLHLKPCLEKLKAQLAEKNMLTFFEQECQNIL 106


>gi|79323071|ref|NP_001031418.1| 3'-5' exonuclease domain-containing protein / K homology
           domain-containing protein / KH domain-containing protein
           [Arabidopsis thaliana]
 gi|330252678|gb|AEC07772.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
           thaliana]
          Length = 342

 Score =  112 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 79/221 (35%), Gaps = 24/221 (10%)

Query: 4   IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           I      +PA+      +    I  D E + L     +LCI+Q++  +    +  I  G+
Sbjct: 36  IVTDPFQLPADFLNPSPEKKLVIGFDCEGVDLCRH-GKLCIMQIAFSNAIYLVDVIEGGE 94

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113
                    L      K+ H  + D   L++ FG+R+  V  T+IA  L        R  
Sbjct: 95  VIMKACKPALESNYITKVIHDCKRDSEALYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPL 154

Query: 114 TNQHGLKDNLK--ELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHAL 163
            +       L      GI+  + ++       D   W+   +++  ++ AA DV  L  L
Sbjct: 155 DDYISFVSLLADPRYCGISYEEKEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYL 214

Query: 164 RLQFTEKLQRLGRSDLA---TSCCNFLMDRAELDLLGWENV 201
             +   KL +     LA      C  L    + D   W  V
Sbjct: 215 YHKMMGKLNQRSLWHLAVRGALYCRCLCCMNDADFADWPTV 255


>gi|18400976|ref|NP_565612.1| 3'-5' exonuclease domain-containing protein / K homology
           domain-containing protein / KH domain-containing protein
           [Arabidopsis thaliana]
 gi|13605561|gb|AAK32774.1|AF361606_1 At2g25910/F17H15.6 [Arabidopsis thaliana]
 gi|18491139|gb|AAL69538.1| At2g25910/F17H15.6 [Arabidopsis thaliana]
 gi|20197359|gb|AAC42241.2| expressed protein [Arabidopsis thaliana]
 gi|21554875|gb|AAM63716.1| unknown [Arabidopsis thaliana]
 gi|330252677|gb|AEC07771.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
           thaliana]
          Length = 341

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 79/221 (35%), Gaps = 24/221 (10%)

Query: 4   IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           I      +PA+      +    I  D E + L     +LCI+Q++  +    +  I  G+
Sbjct: 36  IVTDPFQLPADFLNPSPEKKLVIGFDCEGVDLCRH-GKLCIMQIAFSNAIYLVDVIEGGE 94

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113
                    L      K+ H  + D   L++ FG+R+  V  T+IA  L        R  
Sbjct: 95  VIMKACKPALESNYITKVIHDCKRDSEALYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPL 154

Query: 114 TNQHGLKDNLK--ELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHAL 163
            +       L      GI+  + ++       D   W+   +++  ++ AA DV  L  L
Sbjct: 155 DDYISFVSLLADPRYCGISYEEKEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYL 214

Query: 164 RLQFTEKLQRLGRSDLA---TSCCNFLMDRAELDLLGWENV 201
             +   KL +     LA      C  L    + D   W  V
Sbjct: 215 YHKMMGKLNQRSLWHLAVRGALYCRCLCCMNDADFADWPTV 255


>gi|297597041|ref|NP_001043365.2| Os01g0566900 [Oryza sativa Japonica Group]
 gi|52076246|dbj|BAD45014.1| egalitarian-like [Oryza sativa Japonica Group]
 gi|125526475|gb|EAY74589.1| hypothetical protein OsI_02478 [Oryza sativa Indica Group]
 gi|215712371|dbj|BAG94498.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673376|dbj|BAF05279.2| Os01g0566900 [Oryza sativa Japonica Group]
          Length = 307

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 78/207 (37%), Gaps = 27/207 (13%)

Query: 4   IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +    G +P E     A     I  D E + L      LCI+Q++  D    +  I  G+
Sbjct: 3   VVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDLCRHGA-LCIMQIAFPDAVYLVDAIEGGK 61

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113
           +        L  E   K+ H  + D   L++ FG+++  V  T+IA  L        R Y
Sbjct: 62  ELIEACKPALESEYVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLLEEQEGKKRGY 121

Query: 114 TNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHAL 163
                    L      G+    K +  +    D   W+   LS+  ++ A  DV  L ++
Sbjct: 122 DEYISFVSLLADPRYCGMAYPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSI 181

Query: 164 RLQFTEKLQRLG------RSDLATSCC 184
             +  EKL ++       RS+L   C 
Sbjct: 182 HEKMMEKLSKVSLWRLSVRSELYCRCF 208


>gi|325972527|ref|YP_004248718.1| 3'-5' exonuclease [Spirochaeta sp. Buddy]
 gi|324027765|gb|ADY14524.1| 3'-5' exonuclease [Spirochaeta sp. Buddy]
          Length = 294

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 78/197 (39%), Gaps = 20/197 (10%)

Query: 1   MTTIRVHEGD-----IPAECAARYVDAIAVD--TETLGLMPRRDRLCIVQLSPGDGTVDI 53
           M T  + + D     + ++   + +  +A+D   E   L    + LC++QL  G     +
Sbjct: 1   MHTYTLIDSDAKLNLLQSQWKEQGITTVAMDFEGEFN-LHIYGEHLCLIQLFDGSAYALV 59

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                   +   L   L D    K+      D A++   + + +  V+  +IA+      
Sbjct: 60  DPF---TLSKEALKAFLEDASLLKVMFDCASDSALVRKQYDILLDGVYDIRIAALALGYI 116

Query: 114 TNQHGLKDNLKELL------GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            N  GL   ++  +       ++  K  Q ++W    L  +Q++YA SDV HL  L+   
Sbjct: 117 GNLTGL---VERYIPEAEKPNLSSKKKNQMTNWLIRPLKSDQIEYALSDVEHLLVLKDIL 173

Query: 168 TEKLQRLGRSDLATSCC 184
             ++++ G ++      
Sbjct: 174 DGEVEKKGLTEKVALEM 190


>gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H]
 gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H]
          Length = 1861

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 5/178 (2%)

Query: 24   AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKREKIFHY 81
             +D ET GL    +++ ++Q++  +  V I  +    K      L  +L +EK  KI   
Sbjct: 1313 GLDIETTGLEVFDEKIRLIQIAVENYPVIIYDMFNITKESILTGLREILKNEKVVKIIQN 1372

Query: 82   GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISKAQQSSD 139
            G+FD   L +    +V  +F T IAS+L     N +G K  + +++ L + + K QQ+S 
Sbjct: 1373 GKFDAKFLMHN-NFQVDNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQQNSV 1431

Query: 140  WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
            W+   L++ QL YAA D   L  L  +   ++ +     +       ++   +++L G
Sbjct: 1432 WNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICKENMETVNDIENKCILPICDMELNG 1489


>gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 585

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 25  VDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
           +DTET        + + + Q+    G + +I     ++    +  ++  +      H  +
Sbjct: 27  IDTETT------PKDIRLFQVGLESGPIYVIDFLFVKRAPELIKDIIAKKGVA--GHNLK 78

Query: 84  FDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD 143
           +D+  L     +     F T + ++L     N+  L        G +I K +Q S+WS+ 
Sbjct: 79  YDLKYLMKY-DIHPYTTFDTMVGAQLIG--LNRVSLASVYNHFTGESIDKKEQFSNWSSK 135

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           +L++ Q+ YAA DV  L  L  +   +L + 
Sbjct: 136 ELTESQIFYAAKDVEVLRLLYEKLKNELNKE 166


>gi|82621130|gb|ABB86253.1| 3'-5' exonuclease domain-containing protein-like [Solanum
           tuberosum]
          Length = 338

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 21/197 (10%)

Query: 4   IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +  +  ++P E     A     I  D E + L      LCI+QL+  D    +  +  G+
Sbjct: 34  VVTNPSELPVEFLEPSAETQLVIGFDCEGVDLCRH-GTLCIMQLAFPDAIYLVDAVQGGE 92

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL-------TRTY 113
                    L      K+ H  + D   L++ FG+++  V  T+IA  L        R  
Sbjct: 93  AVVQACKPALESNYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLINEQEGHARVP 152

Query: 114 TNQHGLKDNLK--ELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHAL 163
                    L      G++  + ++       D   W+   LS++ ++ AA DV  L  +
Sbjct: 153 DCHISFVGLLADPRYCGVSYDEKEEVRVLLRQDPKYWTYRPLSEQMIRAAADDVRFLLHI 212

Query: 164 RLQFTEKLQRLGRSDLA 180
             +  +KL      +LA
Sbjct: 213 YHKMVQKLNDKSLWNLA 229


>gi|226954026|ref|ZP_03824490.1| ribonuclease D, processes tRNA [Acinetobacter sp. ATCC 27244]
 gi|226835237|gb|EEH67620.1| ribonuclease D, processes tRNA [Acinetobacter sp. ATCC 27244]
          Length = 286

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
             +F T++A         Q   ++ LK  L I I K Q  SDW A  L+ +Q+ YAA+DV
Sbjct: 2   HNIFDTQVAMAFLGNGL-QVSYQNALKTYLDIEIEKDQTRSDWLARPLTPQQISYAANDV 60

Query: 158 VHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
           ++L  L       LQ  G        C  L     +D
Sbjct: 61  LYLPRLAEALKRDLQSKGIYHYVLEDCQNLTKEIGID 97


>gi|303286107|ref|XP_003062343.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455860|gb|EEH53162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 149

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+ +      V   AVD E       R   C++Q+S  +    +  +A   K   +L  
Sbjct: 9   ADLASHLD--GVAEFAVDLEHHSYRSFRGFTCVIQVSTRERDFVVDALALRSKMRAHLAR 66

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG------LKDN 122
              D  ++K+ H    D+  L   FG+ V  +F T  A+R+    +   G          
Sbjct: 67  HFEDATKQKVMHGADMDVQWLQRDFGIYVVNMFDTGQAARVLELPSKGLGAFYLTDAAYA 126

Query: 123 LKELLGINISKAQQSSDWSADDL 145
           LK    ++  K  Q +DW    L
Sbjct: 127 LKHFCDVDADKRYQLADWRRRPL 149


>gi|224088954|ref|XP_002308585.1| predicted protein [Populus trichocarpa]
 gi|222854561|gb|EEE92108.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 21/197 (10%)

Query: 4   IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +      +P E     A     I  D E + L      LCI+QL+  D    +  I  G+
Sbjct: 33  VVTEPSQLPVEFLNPSAAKQLIIGFDCEGVNLCRHGA-LCIMQLAFPDAIYLVDAINGGE 91

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113
                    L      K+ H  + D   L++ FG+++  V  T+IA  L        R  
Sbjct: 92  SLIKVCKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRTRLP 151

Query: 114 TNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHAL 163
            +       L      G++ + K +       D   W+   LS+  ++ AA DV  L  +
Sbjct: 152 GDYISFVGLLADPRYCGVSYLEKEEVRVLLRQDPMFWTYRPLSEMMIRAAADDVRFLLCI 211

Query: 164 RLQFTEKLQRLGRSDLA 180
             +  EKL       LA
Sbjct: 212 YYKMMEKLNERSLWYLA 228


>gi|227504960|ref|ZP_03935009.1| ribonuclease D [Corynebacterium striatum ATCC 6940]
 gi|227198469|gb|EEI78517.1| ribonuclease D [Corynebacterium striatum ATCC 6940]
          Length = 414

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 6/179 (3%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGML 70
                +R     A+DTE        DR  ++Q+   G GT          + +  L  ++
Sbjct: 25  ATAALSRGTGPFAIDTERASSYRFDDRAFLIQIRRAGAGTFLFAPEGKRSELSAALAPVI 84

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D+    + H    D+  L    G+    +F T++A+R+        G    + EL  + 
Sbjct: 85  NDQD--WVVHAAPSDLPSL-AWLGLYPGTLFDTELAARMADFAHPNLG--AMILELFDVE 139

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
           + K    SDWSA  LS     YAA DV  L  L     + L    +   A      ++D
Sbjct: 140 LEKGYGDSDWSAPKLSPNLRAYAALDVELLLELAEALRDILAEEDKLGWAYEEFAAMVD 198


>gi|37523316|ref|NP_926693.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
 gi|35214320|dbj|BAC91688.1| glr3747 [Gloeobacter violaceus PCC 7421]
          Length = 195

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 9/165 (5%)

Query: 18  RYVDAIAVDTETLGLM---PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
           +    +AVDTET         ++R+ ++Q+  G      +           +   + + +
Sbjct: 25  QTRKVLAVDTETAHWHQVSTGKNRVSLLQVWDGTSEAVSVIDCFAVDLTAFVEKTMRNWE 84

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----RTYTNQHGLKDNLKELLGIN 130
             K+ H   +D+A L      + R V CT   +R      R    ++ LK      LGI 
Sbjct: 85  IVKLIHNAPYDLAYLG--GAAQARSVVCTLQMARSIPTSRRGALERNSLKALSAHFLGIE 142

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           + K  Q+S+W+   L+ EQL YAA D      +       ++   
Sbjct: 143 LDKRYQASNWALRPLTAEQLDYAALDPWVTFHIWEHMRALVEPEN 187


>gi|145630436|ref|ZP_01786217.1| ribonuclease D [Haemophilus influenzae R3021]
 gi|144984171|gb|EDJ91608.1| ribonuclease D [Haemophilus influenzae R3021]
          Length = 273

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           +  T+I +R         GL    ++ L I I K    ++W    LSD QLQYAA DV +
Sbjct: 1   MIDTQIMARFI-GLGASAGLAKLAQQYLNIEIDKGATRTNWIKRPLSDIQLQYAAGDVWY 59

Query: 160 LHALRLQFTEKLQRLGRSDLATSCCNFLMDR 190
           L  L     ++L +          C  ++ +
Sbjct: 60  LLPLYHILEKELAKTPWEQAVRDDCELVLAK 90


>gi|224142834|ref|XP_002324746.1| predicted protein [Populus trichocarpa]
 gi|222866180|gb|EEF03311.1| predicted protein [Populus trichocarpa]
          Length = 331

 Score =  108 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 21/197 (10%)

Query: 4   IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +      +PAE     A     I  D E + L      LCI+QL+  D    +  I  G+
Sbjct: 26  VVTEPSQLPAEFLNPSAAKQLIIGFDCEGVDLCRH-GTLCIMQLAFPDAIYLVDAIKGGE 84

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA-SRL------TRTY 113
                    L      K+ H  + D   L++ FG+++  V  T+IA S++      TR  
Sbjct: 85  SLIRACKPALESSHITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSQIEEQEGRTRLP 144

Query: 114 TNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHAL 163
            +       L      GI+ + K +       D   W+   LS+  +  AA DV  L  +
Sbjct: 145 DDYISFVGLLADPRYCGISYLEKEEVRVLLRQDPMFWTYRPLSEMMIHAAADDVRFLLRI 204

Query: 164 RLQFTEKLQRLGRSDLA 180
             +  EKL +     LA
Sbjct: 205 YYKMMEKLNQRSLWYLA 221


>gi|302337887|ref|YP_003803093.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293]
 gi|301635072|gb|ADK80499.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293]
          Length = 284

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 15/187 (8%)

Query: 4   IRVHEGDIP-----AECAARYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           IR  + D        +  AR V  IAVD E     L    + LC+VQ+  G+    +  +
Sbjct: 5   IRFLDNDQATAAWLDDIKARGVREIAVDIEGEFN-LHRYGEHLCLVQVWDGEVLAIVDPL 63

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                +   +  +       KI +    D  +L+  +G+    V     A  L       
Sbjct: 64  VV---DLALVREIFESGSFRKIVYDCSSDRTLLYRRYGIHFNEVCDLMPAVVLLDFQKK- 119

Query: 117 HGLKDNLKELLGIN--ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            GL   L  +L I     K  Q  DW +  +  + L+YAA+DV+HL  L+ +  ++L+  
Sbjct: 120 -GLASVLSSVLHIEEKPKKKFQQYDWMSRPIDADALEYAAADVLHLFTLKEELFKRLEEE 178

Query: 175 GRSDLAT 181
           G SD   
Sbjct: 179 GLSDEYE 185


>gi|145536632|ref|XP_001454038.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421782|emb|CAK86641.1| unnamed protein product [Paramecium tetraurelia]
          Length = 529

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 16/157 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           A  +D E        +R+C++Q+S G        IA   +    +     ++   KIF+ 
Sbjct: 16  AFGIDIEFSN-----NRICLIQISDGKEIYLFDPIALNLEQ--YMREFFKNDAI-KIFYS 67

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS----KAQQS 137
           G  D+  L   + + V      K+ ++          L    K+  G+       K  Q 
Sbjct: 68  GAQDLKWLKNEYQIVVNNYCDLKVLAQ----KEPDLSLIALWKKYCGVQFEREDKKRLQK 123

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           SDW A  L++EQL YAA D  +L  LR    ++    
Sbjct: 124 SDWFARPLTEEQLFYAALDCKYLVVLREILLQQYTEE 160


>gi|297743128|emb|CBI35995.3| unnamed protein product [Vitis vinifera]
          Length = 367

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 4   IRVHEGDIPAECAA----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           I  H   +P +       R +  I  D E + L      LCI+QL+  D    +  I  G
Sbjct: 66  IVTHASQLPKDFLVPSPVRQL-VIGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGG 123

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RT 112
           +K        L      K+ H  + D   L++ FG+++  V  ++IA  L        R+
Sbjct: 124 EKLMKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRS 183

Query: 113 YTNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHA 162
             +       L      GI+ + K +       D   W+   LS+  ++ AA DV  L  
Sbjct: 184 PDDYISFVGLLADPRYCGISYLEKKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPY 243

Query: 163 LRLQFTEKLQRLGRSDLA 180
           +  +  E+L       LA
Sbjct: 244 IYYKMMEELNEHSLWKLA 261


>gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7]
 gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7]
          Length = 2016

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 18   RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKR 75
            + +    +D ET GL    + + ++Q++  +  V I  +           L  +L ++  
Sbjct: 1462 KDIKYCGLDIETTGLEVFDENIRLIQIAVENYPVIIYDMFNINKKDILDGLRKVLENKNI 1521

Query: 76   EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK--DNLKELLGINISK 133
             KI   G+FD   L +    ++  +F T IAS+L     N +G K  + +++ L + + K
Sbjct: 1522 IKIIQNGKFDAKFLLHN-NFKIENIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVILDK 1580

Query: 134  AQQSSDWSADDLSDEQLQYAASD 156
             QQ+S W+   L++ QL YAA D
Sbjct: 1581 QQQNSVWNNSLLNNNQLFYAARD 1603


>gi|145544186|ref|XP_001457778.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425596|emb|CAK90381.1| unnamed protein product [Paramecium tetraurelia]
          Length = 389

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 16/162 (9%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
             +A  +D E         R+C++Q+S G        IA   +    +     ++   KI
Sbjct: 13  QGEAFGIDIEFSNK-----RICLIQISDGKEIYLFDPIALNLEQ--YMRDFFQNDAI-KI 64

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS----KA 134
           F+ G  D+  L   + + V      K+   L +   +Q  L    K+  G+       K 
Sbjct: 65  FYSGAQDLKWLKTEYQIEVNNYCDLKV---LAQKEPDQ-SLIALWKKYCGVQFERDDKKR 120

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            Q SDW A  LS EQL YAA D  HL  LR    ++     +
Sbjct: 121 LQRSDWFARPLSQEQLFYAALDCKHLIMLRDILLQQYTEEEK 162


>gi|326496741|dbj|BAJ98397.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326514394|dbj|BAJ96184.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 332

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 27/207 (13%)

Query: 4   IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +    G +P E     A     I  D E + L  R   LCI+Q++  D    +  I  G+
Sbjct: 28  VVTKPGQLPVEFLEPSAAKKLVIGFDCEGVDL-CRNGALCIMQIAFPDAVYLVDAIEGGK 86

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTY 113
           +        L  +   K+ H  + D   L++ FG+++  V  T+IA  L        R Y
Sbjct: 87  ELVEACKPALESDHVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIEEQEGKKRAY 146

Query: 114 TNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHAL 163
                    L      G+    K +  +    D   W    LS+  ++ A  DV  L  +
Sbjct: 147 DVYISFVSLLADPRYCGMPYPEKEEVRTLLRQDPNFWKNRPLSEMMIRAATDDVRFLLNI 206

Query: 164 RLQFTEKLQRLG------RSDLATSCC 184
             +  EKL ++       RS+L   C 
Sbjct: 207 HEKMMEKLSKVSSWRLAVRSELYCRCF 233


>gi|225442373|ref|XP_002281479.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 336

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 4   IRVHEGDIPAECAA----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           I  H   +P +       R +  I  D E + L      LCI+QL+  D    +  I  G
Sbjct: 35  IVTHASQLPKDFLVPSPVRQL-VIGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGG 92

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RT 112
           +K        L      K+ H  + D   L++ FG+++  V  ++IA  L        R+
Sbjct: 93  EKLMKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRS 152

Query: 113 YTNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHLHA 162
             +       L      GI+ + K +       D   W+   LS+  ++ AA DV  L  
Sbjct: 153 PDDYISFVGLLADPRYCGISYLEKKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPY 212

Query: 163 LRLQFTEKLQRLGRSDLA 180
           +  +  E+L       LA
Sbjct: 213 IYYKMMEELNEHSLWKLA 230


>gi|242057747|ref|XP_002458019.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
 gi|241929994|gb|EES03139.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
          Length = 340

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 76/201 (37%), Gaps = 25/201 (12%)

Query: 4   IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           I    G +P E     A     I  D E + L  R   LCI+QL+  D    +  I  G+
Sbjct: 32  IVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDL-CRNGALCIMQLAFPDAVYLVDAIEGGK 90

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT------ 114
           +        L  +   K+ H  + D   L++ FG+++  V  T+IA  L +         
Sbjct: 91  ELIQACKPALESDHITKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIQEQEQEGKKK 150

Query: 115 -----NQHGLKDNL--KELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVH 159
                N       L  K   GI    K +  +    D   W+   LSD  ++ A  DV  
Sbjct: 151 TSDDYNYISFVSLLADKRFCGIPYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRF 210

Query: 160 LHALRLQFTEKLQRLGRSDLA 180
           L  +  +  EKL ++    LA
Sbjct: 211 LLNIYEKMMEKLSKVSLWRLA 231


>gi|302824807|ref|XP_002994043.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii]
 gi|300138097|gb|EFJ04877.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii]
          Length = 328

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 19/181 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A +  AI +D E + L     RLCI+QL+  D    +  +  G          L      
Sbjct: 37  AAHALAIGLDCEGVDLARH-GRLCIMQLAFQDAIYLVDAVQGGDALMQACKAALESPHVT 95

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKE---L 126
           K+ H  + D   L++  G+++  VF T+IA  L      +           D L +    
Sbjct: 96  KVVHDCKRDSEALYFQHGIKLNNVFDTQIAHSLIELQQGRQWIPDDCISFVDLLADAKYC 155

Query: 127 LGINIS-KAQQSS----D---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +G+    K +  S    D   W+   L++   + AA DV  L  +     ++L      +
Sbjct: 156 VGVAYDEKDEVRSLLRKDPEFWTHRPLTNMMKRAAADDVRFLLRIHRNMVQRLDAFSAWE 215

Query: 179 L 179
           L
Sbjct: 216 L 216


>gi|255637101|gb|ACU18882.1| unknown [Glycine max]
          Length = 278

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 18/176 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I  D E + L  R+  LC++QL+  D    +  I  G++        L      K+ H 
Sbjct: 60  VIGFDCEGVDL-CRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHD 118

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTYTNQHGLKDNLK--ELLGINIS 132
            + D   L++ FG+++  V  T+IA  L        R   +       L      G +  
Sbjct: 119 CKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGKSYD 178

Query: 133 KAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           + ++       D   W    LS++ ++ AA DV  L  +  Q  EKL       LA
Sbjct: 179 EKEEVRVLLRQDPKFWRHRPLSEQMVRAAADDVRFLLYIYHQMMEKLNERSLWYLA 234


>gi|226533369|ref|NP_001143931.1| hypothetical protein LOC100276743 [Zea mays]
 gi|194696098|gb|ACF82133.1| unknown [Zea mays]
 gi|195629726|gb|ACG36504.1| hypothetical protein [Zea mays]
          Length = 344

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 25/201 (12%)

Query: 4   IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           I    G +P E     A     I  D E + L  R   LCI+QL+  D    +  I  G+
Sbjct: 36  IVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDL-CRNGALCIMQLAFPDAVYLVDAIEGGK 94

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT------ 114
           +        L  +   K+ H  + D   L++ FG+++  V  T+IA  L +         
Sbjct: 95  ELIQACKPALESDHITKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIQEQEQKGKKK 154

Query: 115 -----NQHGLKDNL--KELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVH 159
                N       L  K   GI   + ++       D   W+   LSD  ++ A  DV  
Sbjct: 155 TSDDYNYISFVSLLADKRYCGIPYPEKEEVRILLRQDPNFWTIRPLSDMMVRAATDDVRF 214

Query: 160 LHALRLQFTEKLQRLGRSDLA 180
           L  +  +  EKL ++    LA
Sbjct: 215 LLNIYEKMMEKLNKVSLWRLA 235


>gi|255647529|gb|ACU24228.1| unknown [Glycine max]
          Length = 345

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 18/176 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I  D E + L  R+  LC++QL+  D    +  I  G++        L      K+ H 
Sbjct: 61  VIGFDCEGVDL-CRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHD 119

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLT-------RTYTNQHGLKDNLK--ELLGINIS 132
            + D   L++ FG+++     T+IA  L        R   +       L      GI+  
Sbjct: 120 CKRDSEALYFQFGIKLNNAVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGISYD 179

Query: 133 KAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           + ++       D   W+   LS++ ++ AA DV  L  +  Q  EKL       LA
Sbjct: 180 EKEEVRVLLRQDPKFWTHRPLSEQMIRAAADDVRFLLYIYRQMMEKLNERSLWYLA 235


>gi|302789405|ref|XP_002976471.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii]
 gi|300156101|gb|EFJ22731.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii]
          Length = 328

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 19/181 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A +  AI +D E + L     RLCI+QL+  D    +  +  G          L      
Sbjct: 37  AAHALAIGLDCEGVDLARH-GRLCIMQLAFQDAIYLVDAVQGGDALMQACKPALESPHVT 95

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKE---L 126
           K+ H  + D   L++  G+++  VF T+IA  L      +           D L +    
Sbjct: 96  KVVHDCKRDSEALYFQHGIKLNNVFDTQIAHSLIELQQGRQWIPDDCISFVDLLADAKYC 155

Query: 127 LGINIS-KAQQSS----D---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +G+    K +  S    D   W+   L++   + AA DV  L  +     ++L      +
Sbjct: 156 VGVAYDEKDEVRSLLRKDPEFWTHRPLTNMMKRAAADDVRFLLRIHRNMVQRLDAFSAWE 215

Query: 179 L 179
           L
Sbjct: 216 L 216


>gi|241670620|ref|XP_002399861.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215506210|gb|EEC15704.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 853

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 20/183 (10%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--AAGQKNAPNLVG 68
           + A         +A+D E + L PR   L ++QL+   G V +  +       +   L  
Sbjct: 539 LYARAMLSQCPVLALDAEGVNLGPRGP-LTLLQLATAAGEVFLFDVQSTPQLFDEGKLKD 597

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLK 120
           +L  +   K+ H  R D A LFY FG+R++ VF T+ A    +               L 
Sbjct: 598 ILESQTIVKVVHDCRNDSAALFYQFGIRLQNVFDTQAAHATLQQQDQGKPVHKVKNVSLG 657

Query: 121 DNLKELLGINISKAQQ-----SSD---WSADDLSDEQLQYAASDVVHLHA-LRLQFTEKL 171
                  G    + +Q       D   WS   LS++ + +AA DV  L   +       +
Sbjct: 658 TLCGLYGGPPNPRREQVKSLYRRDQKFWSRRPLSEDMVFHAAFDVFCLLPAVHDALRGAI 717

Query: 172 QRL 174
           +  
Sbjct: 718 KPE 720


>gi|298245785|ref|ZP_06969591.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963]
 gi|297553266|gb|EFH87131.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963]
          Length = 402

 Score =  105 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 12/165 (7%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRR--------DRLCIVQLSPGDGTVDIIRIAAGQKN 62
           + A    +    +A+D E   +             RL ++QL+       +  +    K+
Sbjct: 46  LHAVELLKQSPVVAIDAEFTQVRSLSAESNGSTVPRLALLQLAIEKQCFVVDTLR--LKD 103

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  ++ D     + H    D+ V+    GV V   +  +  SR          L   
Sbjct: 104 LSPLNTVVSDPDVIVLLHGAGADLRVMAER-GVFVAHYYDLEATSRSVFGQHES-SLAAM 161

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           L     + + K+ Q +DW+   L    + YAA D     AL    
Sbjct: 162 LWRAFHMRLDKSLQRTDWTRRPLPPAMVAYAARDAEATLALYSWL 206


>gi|226491678|ref|NP_001141141.1| hypothetical protein LOC100273227 [Zea mays]
 gi|194702850|gb|ACF85509.1| unknown [Zea mays]
          Length = 339

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 76/201 (37%), Gaps = 25/201 (12%)

Query: 4   IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           I    G +P E     A     I  D E + L  R   LCI+QL+  D    +  I  G+
Sbjct: 31  IVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDL-CRNGALCIMQLAFPDAVYLVDAIEGGK 89

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT------ 114
           +        L  +   K+ H  + D   L++ FG+++  V  T+IA  L           
Sbjct: 90  ELIQACKPALESDHITKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIEEQEQEGKKM 149

Query: 115 -----NQHGLKDNL--KELLGI-NISKAQQSS----D---WSADDLSDEQLQYAASDVVH 159
                N       L  K   GI    K +  +    D   W+   LSD  ++ A  DV  
Sbjct: 150 TSDDYNYISFVSLLADKRYCGILYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRF 209

Query: 160 LHALRLQFTEKLQRLGRSDLA 180
           L ++  +  EKL ++    LA
Sbjct: 210 LLSIYAKMMEKLSKVSLWRLA 230


>gi|156089519|ref|XP_001612166.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
 gi|154799420|gb|EDO08598.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
          Length = 230

 Score =  104 bits (261), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 23/177 (12%)

Query: 7   HEGDIPAECAARYVDAIAVDTE-------------TLGLMPRRDRLCIVQLSPGDGTVDI 53
           H  D  A   +     +  D E                  P      ++Q++  D    +
Sbjct: 45  HYQDSAAALLS--TKCVGFDLEYVPDYYASIHRQSFDRTRP-----AVIQIASND-ICLV 96

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
             +        ++  +L D    KI H    D+ +++  FGVR R     +  S      
Sbjct: 97  YLMYKIGHLPSSVSHILSDPDILKISHGAPSDMRLMYRHFGVRSRSFVDLQ--SVCEELQ 154

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
                LK  ++ +LG+ +SK QQ S+W A +LS +Q++YAA+D     A  L+   K
Sbjct: 155 LRPCSLKSVVQRVLGLRLSKKQQCSNWEAAELSQQQIKYAATDAWVTLAAFLKLKPK 211


>gi|294950345|ref|XP_002786583.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239900875|gb|EER18379.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 387

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 20/173 (11%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            A      I VD E + L     +LC +Q++   G   +            L  +L D  
Sbjct: 34  LALAKEGVIGVDCEGVMLGRF-GQLCTIQIATERGDAFMFDACRPGVVQS-LAPLLSDPS 91

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLKELL---GIN 130
             K+FH  R D + L++  G+ +  VF T+ A+ L     + Q G  + ++++L      
Sbjct: 92  VLKVFHDCREDSSALYHQHGISLDCVFDTQ-ATMLVGNRMDHQTGYWELVRQVLFDGEKE 150

Query: 131 IS----------KAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           +S          K Q + D   W    L    + YA S  +HL  L      +
Sbjct: 151 VSHEVLGDDPQFKTQMAEDPELWRRRPLPQHVVDYALSGCLHLIPLYHAIQSR 203


>gi|218680574|ref|ZP_03528471.1| ribonuclease D [Rhizobium etli CIAT 894]
          Length = 262

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
            +  ++I K+ + +DWS   LSD+QL+YA +DV HL  + L    +L R GR+   +   
Sbjct: 2   RIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAELDREGRTSWLSEEM 61

Query: 185 NFLMDRAELDLL---GWENVD 202
           + L  R   DL     W+ + 
Sbjct: 62  DILEARETYDLHPDDAWQRLK 82


>gi|13278238|gb|AAH03952.1| Exosc10 protein [Mus musculus]
          Length = 517

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 89  LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDE 148
           L   FG+ V  +F T  A+RL      +H L   L+   G+  +K  Q +DW    L +E
Sbjct: 5   LQKDFGLYVVNMFDTHQAARLLN--LARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEE 62

Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLG 175
            L YA  D  +L  +  +   +L   G
Sbjct: 63  MLSYARDDTHYLLYIYDRMRLELWERG 89


>gi|148909222|gb|ABR17711.1| unknown [Picea sitchensis]
          Length = 317

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 18/176 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I  D E + L     RLCI+QL+  D    +  +  G          L      K+ H 
Sbjct: 36  VIGFDCEGVDLARY-GRLCIMQLAFEDAVYLVDAVEGGHLLMQACKPALESVYVTKVVHD 94

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLK--ELLGIN-I 131
            + D   L++ +G+++  V  T+IA  L      +             L      G++  
Sbjct: 95  CKRDSEALYFQYGIKLNNVVDTQIAYSLIEEQEGRKWAPDEYISFVGLLADPRYCGVSYA 154

Query: 132 SKAQQSS----D---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            K +  +    D   W    L+    + AA DV  L  +  +  EKL+      LA
Sbjct: 155 EKEEVRTLLREDPKFWEHRPLTYMMKKTAADDVRFLLHIYNKMIEKLELHSLWQLA 210


>gi|168010031|ref|XP_001757708.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690984|gb|EDQ77348.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 294

 Score =  104 bits (260), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I  D E + L     RLCI+QL+  D    +  +  G          L      K+ H 
Sbjct: 13  VIGFDCEGVDLARY-GRLCIMQLAFDDAVYLVDAVMGGNSLMQACKLGLESPYVIKVCHD 71

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-------NQHGLKDNL--KELLG---- 128
            + D   L++ +G+++  VF T+IA  L +          +     D L  +   G    
Sbjct: 72  CKRDSEALYFQYGIKLNNVFDTQIAYTLLKEQHGKKWVPDDYISFVDLLADERYCGMIYD 131

Query: 129 ------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
                 + + K  Q   W+    +    + AA DV  L  +  +  + L  L +  L
Sbjct: 132 EKEEVRVLLRKDPQF--WAHRPWTVMMKRVAADDVRFLLRIYERMVKSLTELSKWRL 186


>gi|168060140|ref|XP_001782056.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666467|gb|EDQ53120.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 319

 Score =  103 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 25/199 (12%)

Query: 4   IRVHEGDIPAECA---ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           I  H   +P             I  D E + L     RLC++QL+  +    +  +  G 
Sbjct: 8   IVTHPAQLPTSFLRPNPHQPFVIGFDCEGVDLARY-GRLCVMQLAFDNAVYLVDAVLGGN 66

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT------ 114
               +    L      K+ H  + D   L++ + +++  VF T+IA  L           
Sbjct: 67  ALMQSCKLGLESPYIIKVCHDCKRDSEALYFQYNIKLNNVFDTQIAFSLLEEQRGKNWMP 126

Query: 115 -NQHGLKDNL--KELLGINIS----------KAQQSSDWSADDLSDEQLQYAASDVVHLH 161
            +     D L  +   G+             K  Q   W+    +    + AA DV  L 
Sbjct: 127 DDYISFVDLLADERYCGVAYDEKEEVRMLLRKDPQF--WAHRPWTVMMKRVAADDVRFLL 184

Query: 162 ALRLQFTEKLQRLGRSDLA 180
            +  +  + L  L +  L 
Sbjct: 185 CIYERMVKSLTDLSKWRLH 203


>gi|325118112|emb|CBZ53663.1| Exonuclease 3'-5' domain-like-containing protein 1, related
           [Neospora caninum Liverpool]
          Length = 355

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 15/160 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-PNLVGMLVDEKREKIFHY 81
           +A+D E + L     R+C VQ++    T+ +     G       L  +L      K+ H 
Sbjct: 78  VALDCEGVALGRF-GRMCTVQIATSTHTLLLDAFKTGVVGGNKKLKEILESPHIVKVCHD 136

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN----QHGLKDNLKELLGIN---ISKA 134
            R D + L +   +R+R VF T++A ++          Q  L +  +  L +    ++K 
Sbjct: 137 CREDASALLHQHTIRLRNVFDTQVAHQIWSEQKGETRFQASLSELFRSFLNLRDGGVAKQ 196

Query: 135 QQS------SDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            +S      S W    L  + L+YA   V HL  L     
Sbjct: 197 AKSAMEADPSVWCQRPLPTDLLRYAVFGVSHLLDLAHILA 236


>gi|330837264|ref|YP_004411905.1| 3'-5' exonuclease [Spirochaeta coccoides DSM 17374]
 gi|329749167|gb|AEC02523.1| 3'-5' exonuclease [Spirochaeta coccoides DSM 17374]
          Length = 298

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 24/208 (11%)

Query: 11  IPAECAARYVDAIAVD--TETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           +      + ++ +A+D   E   L    + LC++QL  G     I        +A  L  
Sbjct: 16  LLDTWRQKGINLVAMDFEGEFN-LHVYGEHLCLIQLYDGHDFYLIDPFIV---SARTLKS 71

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL- 127
            L  +  EKI      D +++   +G+++R +   ++ +       N  GL   +++ + 
Sbjct: 72  FLEADDIEKIMFDCASDASLVRKQYGIQLRNICDLRVMAMALGFMGNLTGL---IEQYVP 128

Query: 128 -GINISKAQ-------------QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
             + +                 Q ++W    L+  QL YA  DV HL  LR     ++ +
Sbjct: 129 RNVPLIAESTDSSEKSGSKKKNQMTNWMKRPLTPSQLVYALEDVAHLFVLRSALVAEIAK 188

Query: 174 LGRSDLATSCCNFLMDRAELDLLGWENV 201
            G  +   +           +  GWE +
Sbjct: 189 AGLEEKVAALMRLAPLPKGPEKPGWEKL 216


>gi|50508632|dbj|BAD31028.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica
           Group]
 gi|50509503|dbj|BAD31184.1| polymyositis/scleroderma autoantigen 2 -like [Oryza sativa Japonica
           Group]
          Length = 1031

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           IFH    D+  L   F + V  +F T  A  +      Q  L   L+   G+   K  Q 
Sbjct: 303 IFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSK--PQKSLAYLLELYCGVTTDKTMQR 360

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            DW    L+ E +QYA  D  +L  +      +L   
Sbjct: 361 EDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAK 397



 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 8   EGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           E D   E  AR +D   A AVDTE   L        ++Q+S       I  IA       
Sbjct: 149 ETDAQLEDLARLLDDEKAFAVDTEQHSLRSFLGYTALMQISTQKADYLIDTIAL-HDVMS 207

Query: 65  NLVGMLVDEKR 75
            L  +  +   
Sbjct: 208 ILRPVFANPSI 218


>gi|195455204|ref|XP_002074609.1| GK23167 [Drosophila willistoni]
 gi|194170694|gb|EDW85595.1| GK23167 [Drosophila willistoni]
          Length = 1008

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 24/209 (11%)

Query: 6   VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V   DI  + AA+     I++D E + L   +  + ++++  G G   +  + +      
Sbjct: 539 VFVTDILLKYAAKNESIVISLDCEGINLG-LKGEITLIEIGTGRGEAFLFDVQSCPAMVS 597

Query: 65  N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116
           +  L  +L  E+  K+ H  R D A L+  FG+ +R VF T+ A  + +   N       
Sbjct: 598 DGGLKTLLEHEQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKA 657

Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163
               L    ++       +   + K     D   W+   L+ E + YAA DV+ L    L
Sbjct: 658 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 716

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
                 +++   R  L+  C   ++ + +
Sbjct: 717 FGNLARQIKPENRQLLSELCTEQILMQIK 745


>gi|321451818|gb|EFX63353.1| hypothetical protein DAPPUDRAFT_35911 [Daphnia pulex]
          Length = 143

 Score =  102 bits (255), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I VD E       R   C++Q+S       I  +       P L  +  D    KIF  
Sbjct: 31  VIGVDLEHHSYRSYRGITCLMQISTEKTDYIIDTLKLWDHLQP-LNKVFGDPNIVKIFQG 89

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
              D+  L   FG+ +  +F T  A+ L      + GL   L+    ++++K  Q
Sbjct: 90  ADSDVIWLQRDFGIYIVNLFYTLQAASLLG--FEKKGLPFLLQHYCQVHVNKKYQ 142


>gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
          Length = 2215

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 12/131 (9%)

Query: 86   IAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSA 142
            I  L    GV V  P+F T IA+++        G K    ++  LG+ + K  Q+SDWS+
Sbjct: 1691 IGALQSDGGVYVSGPIFDTLIAAKVVEAGVMGTGFKLLQVVERFLGVLMDKRMQASDWSS 1750

Query: 143  DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG----- 197
              LS EQL YAA D   +  L+ +   KL+     ++       L     ++L G     
Sbjct: 1751 PHLSQEQLLYAARDAAVMLPLQQRLQRKLEAYDLQEVMDVEMRCLRPVVAMELNGMQIEH 1810

Query: 198  --WENVDIFSH 206
              W+ ++  +H
Sbjct: 1811 ARWKELE--AH 1819



 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 22   AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKI 78
            ++ VD ET GL P   R+ ++QL+  D    +  + A   ++P+L     +L   +  K+
Sbjct: 1527 SMGVDVETTGLDPYSARVRLLQLALPDFPTLLFDLFALPVSSPSLRAVRLLLASPRIRKV 1586

Query: 79   FHYGRFDIAVLFYTFGV-----RVRP 99
            FH G+FD+       G+     R  P
Sbjct: 1587 FHNGKFDL-CFLAAAGLGGPQSRPAP 1611


>gi|332021038|gb|EGI61427.1| Exonuclease 3'-5' domain-containing protein 1 [Acromyrmex
           echinatior]
          Length = 832

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKIF 79
            ++ D E + L   R +L +VQ+    G   +  +    G   A  L  +L      K+ 
Sbjct: 417 VVSFDCEGINLGV-RGQLTLVQIGTMSGQAYVFDLVTCPGLVQAGGLQKLLEHPHVTKVI 475

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL----- 126
           H  R D   L+  F + +  VF T+ A  + +               L            
Sbjct: 476 HDCRNDSVNLYNQFNITLTNVFDTQAAHAVLQFQDTGKPVYKVKNVNLNTLCDHYNAPCN 535

Query: 127 -LGINIS----KAQQSSDWSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDLA 180
            L   +     K Q+   WS   ++ E L YA+SDV+ L   +    +  ++    S  A
Sbjct: 536 PLKEQLKNIYRKDQRY--WSRRPITREMLIYASSDVLSLVPQVYNAMSRLIKPEQESLFA 593

Query: 181 TSCCNFLMDRAE 192
             C   +     
Sbjct: 594 ELCEEQIQMHIR 605


>gi|157129284|ref|XP_001655349.1| hypothetical protein AaeL_AAEL002475 [Aedes aegypti]
 gi|108882084|gb|EAT46309.1| conserved hypothetical protein [Aedes aegypti]
          Length = 939

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 21/191 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79
            ++ D E + L   R ++ ++QL    G   I  +A+     P+  +  +L  EK  K+ 
Sbjct: 480 VVSFDCEGINLGV-RGQITMIQLGTTRGEAFIFDVASCPDMVPHGGIKEVLESEKVIKVI 538

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL-LGIN 130
           H  R D   LF  F + ++ VF T+ A  + +               L    +     +N
Sbjct: 539 HDCRNDSVNLFNQFQILLKNVFDTQSAHAVLQFQDQGKQVYKVKNVSLNTLCEMYNATVN 598

Query: 131 ISKAQ----QSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLGRSDLAT 181
             K Q       D   W+   L+ + L YAA DV+ L    L L     ++   R  LA 
Sbjct: 599 PMKDQLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMATSIKAEFRELLAE 658

Query: 182 SCCNFLMDRAE 192
            C   ++    
Sbjct: 659 LCTEQILMLIR 669


>gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246]
          Length = 203

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 12/134 (8%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII--RIAAGQKNAPNLVGML 70
           A+    +   +AVDTET GL P RDR+ ++Q++ G     I     A    +   L   L
Sbjct: 41  ADALQGWAGPVAVDTETTGLDPARDRVRLIQVAAGQDVALIDVFAFADPVADLRPLFAAL 100

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-------QHGLKDNL 123
            D+  E++ H  +FD+  L   F      VF T +ASR+             +HGL D  
Sbjct: 101 ADK--EQVGHNLQFDLRFL-APFEFVPGKVFDTILASRVRHAGDRAESNGRFRHGLGDAA 157

Query: 124 KELLGINISKAQQS 137
              LG ++ K++Q+
Sbjct: 158 ARELGRSLDKSEQT 171


>gi|223995113|ref|XP_002287240.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976356|gb|EED94683.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 743

 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 53/147 (36%), Gaps = 14/147 (9%)

Query: 38  RLCIVQLSPG----DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY-GRFDIAVLFYT 92
           R C++Q++      D  +D +           L  +  D +  KI H  G  D   L   
Sbjct: 321 RTCLIQMTANTVVKDYVIDPLAPNVWDAIPHYLGPLFSDPRIVKIGHGIGGMDTTSLHRD 380

Query: 93  FGVRVRPVFCTKIASR-LTRTYTNQHGLKDNLKELLGI-------NISKAQQSSDWSADD 144
           FG+ +   F T  AS  L        GL    K   G+       N+    Q SDW    
Sbjct: 381 FGIVIVNAFDTFEASAVLLHGKKGGLGLAKLCKHY-GLPCWQDYANLKSQFQCSDWRKRP 439

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKL 171
           L D+ L+Y   DV  L  +R      L
Sbjct: 440 LCDDALEYGRYDVRFLITIRQLLLRDL 466


>gi|242008039|ref|XP_002424820.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212508370|gb|EEB12082.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 843

 Score = 99.7 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 35/198 (17%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA--GQKNAPNL 66
            DI ++        ++VD E + L   + +L ++Q+   +G V +  +        A  L
Sbjct: 387 DDILSKAKEGSEVVVSVDCEGINLGS-KGKLTLIQIGTMNGNVYVFDLVTCSNLFEAGGL 445

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHG 118
             +L  ++  K+ H  R D + +++ FGV +R VF TK A  + +               
Sbjct: 446 ARLLTSDQVIKVIHDCRNDSSTIYFQFGVILRNVFDTKSAHAVIQMQEMGKPVHKVKDVS 505

Query: 119 LKDN----------LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV----HLHAL- 163
           L             +KE    NI K  Q   W    LS + + YAA+DV+    HL++L 
Sbjct: 506 LNTLYEIYNLPTNPMKEYFK-NIYKKDQKI-WGRRPLSRDMIVYAAADVLSLVPHLYSLM 563

Query: 164 -------RLQFTEKLQRL 174
                    +  E+L   
Sbjct: 564 LKIIKPEYKKLLEELCEE 581


>gi|260772433|ref|ZP_05881349.1| ribonuclease D [Vibrio metschnikovii CIP 69.14]
 gi|260611572|gb|EEX36775.1| ribonuclease D [Vibrio metschnikovii CIP 69.14]
          Length = 267

 Score = 99.3 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
            +     Y    G      +LL + + K++  +DW A  LS++QL+YAA+DV +L  +  
Sbjct: 1   MAAFI-GYGLSTGFAALANDLLNVELDKSESRTDWLARPLSEKQLEYAAADVFYLLPMFE 59

Query: 166 QFTEKLQRLGRSDLATSCCNF 186
           Q  +K+ + G  D        
Sbjct: 60  QLLDKVTQAGWWDAVLQESQL 80


>gi|170041336|ref|XP_001848422.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167864931|gb|EDS28314.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 982

 Score = 99.3 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 21/191 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79
            I+ D E + L   R ++ ++QL    G   I  +A      P+  +  +L  EK  K+ 
Sbjct: 505 VISFDCEGINLGV-RGQITMIQLGTTRGEAFIFDVATCPDMVPHGGIKQVLEAEKVIKVI 563

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL-LGIN 130
           H  R D   L+  F + +R VF T+ A  + +               L    +     +N
Sbjct: 564 HDCRNDSVNLYNQFQIMLRNVFDTQSAHAVLQFQDQGKQVYKVKNVSLNTLCEMYNATVN 623

Query: 131 ISKAQ----QSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLGRSDLAT 181
             K Q       D   W+   L+ + L YAA DV+ L    L L     ++   R  LA 
Sbjct: 624 PMKDQLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMATSIKPEFRELLAE 683

Query: 182 SCCNFLMDRAE 192
            C   ++    
Sbjct: 684 LCTEQILMLIR 694


>gi|218749845|ref|NP_001136335.1| egalitarian [Nasonia vitripennis]
          Length = 829

 Score = 98.9 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 22/183 (12%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGM 69
           P + AA     ++ D E + + P + RL ++Q+    G + I  +        A  L  +
Sbjct: 401 PRKSAADGKSVVSFDCEGINVGP-KGRLTLLQIGTMSGLIYIFDLITCPNILQAGGLQKL 459

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKD 121
           L  E   K+ H  + D A LF+ FG+ +  +F T+ A  +                 L  
Sbjct: 460 LESENVIKVIHDCKNDSANLFHQFGITLVNIFDTQAAHSVIEYQNTGKPVYKVKNANLNT 519

Query: 122 NLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHAL-RLQFTEKL 171
                      L   +    +  D   W+   L+ + + YA+SDV  L  L     ++ +
Sbjct: 520 LCDLYGAPSNVLKEQLKNIYRR-DQRYWARRPLTRDMIVYASSDVQSLVPLIYNAMSKLI 578

Query: 172 QRL 174
           +  
Sbjct: 579 KPE 581


>gi|70950310|ref|XP_744489.1| exonuclease [Plasmodium chabaudi chabaudi]
 gi|56524464|emb|CAH74590.1| exonuclease, putative [Plasmodium chabaudi chabaudi]
          Length = 406

 Score = 98.1 bits (244), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 32/203 (15%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPG--------DGTVDIIRIAAGQKNAPNLVGMLVD 72
           D IAVD E   L     ++C++Q+           +       +     N+  +  ++ +
Sbjct: 103 DIIAVDFEGTNLGRY-GKVCLMQIYTEIEKKDKVFEKYYIFDLLNKSVINS--VKKIIEN 159

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-----RTYTNQHGLKDNLKELL 127
           +K  K+ H  R D + L+    ++   V+ T  A  L           Q    + L + L
Sbjct: 160 KKTLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLLLEKKKENDIYQVSFLNLLHDYL 219

Query: 128 GI------NISKAQQSSD--WSADDLSDEQLQYAASDVVHLHALR---LQFTEKLQRLGR 176
           G+      NI K    +D  W    LS   + YA  +V +L  +     +   K + L +
Sbjct: 220 GVKDDCLNNIKKEMYKNDKIWEIRPLSKISIIYALKNVKYLLPIYKIFDKLISKKEVLEK 279

Query: 177 S-DLATSCCNFLMDRAEL--DLL 196
           S D    C   L  R +L  DL 
Sbjct: 280 SKDFVNYCF--LNSRYKLPVDLA 300


>gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 704

 Score = 98.1 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 73/211 (34%), Gaps = 36/211 (17%)

Query: 18  RYVDAIAVDTETLGLM------PRRDRLCIVQLSPGDGTVDIIRIAAGQK---------- 61
           +       D ET          P    + ++Q++     V +I I  G            
Sbjct: 37  QQSPRFGFDLETFSRASTPAIAPETGEIRLIQIAIEQPAVQVIVIDLGWTAKERSRIHQK 96

Query: 62  -----NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR-------- 108
                    L   L + + E + H   F+   +   +   +R +  TK+ S+        
Sbjct: 97  LESLGFWTTLQERLANPQVEVVGHSLDFEQRWMLAKYNFPIRNLRDTKLMSQVYWAGLDP 156

Query: 109 -LTRTYTNQHGLKDNLKELLGINISKAQQSSDWS-----ADDLSDEQLQYAASDVVHLHA 162
            L + +   H L+      LGI+I K++Q+SDW         LS+ Q  YAA+D      
Sbjct: 157 WLLKQHGKPHSLESVCLR-LGISIDKSRQTSDWGWGDLGNGQLSNNQFNYAANDASITIK 215

Query: 163 LRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
           +      +L+ +G        C      A++
Sbjct: 216 VHDLLEPRLKEIGVWTSYLIECAASPAFAQM 246


>gi|195119318|ref|XP_002004178.1| GI19770 [Drosophila mojavensis]
 gi|193909246|gb|EDW08113.1| GI19770 [Drosophila mojavensis]
          Length = 991

 Score = 97.0 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 80/209 (38%), Gaps = 23/209 (11%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
            V +  +       +  AI++D E + L   +  + ++++    G   +  + +      
Sbjct: 522 FVTDALLDLAKDEEHNIAISLDCEGINLGI-KGEITLIEIGTARGEAFLFDVQSCPAMVS 580

Query: 65  N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116
           +  L  +L  ++  K+ H  R D   L+  FG+ +R VF T+ A  + +   N       
Sbjct: 581 DGGLKTLLEHDQVIKVIHDCRNDAVNLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKA 640

Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163
               L    ++       +   + K     D   W+   L+ E + YAA DV+ L    L
Sbjct: 641 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHEQL 699

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
                ++++   R   +  C   ++ + +
Sbjct: 700 FGTLAQQIKPENRQLFSELCTEQILMQIK 728


>gi|82753293|ref|XP_727619.1| 3'-5' exonuclease [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483550|gb|EAA19184.1| 3'-5' exonuclease, putative [Plasmodium yoelii yoelii]
          Length = 410

 Score = 97.0 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 16/179 (8%)

Query: 7   HEGDIPAECAARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGD-GTVDIIRIAAGQKNAP 64
           +  +I        +  I +D E  G    R   + I+Q+   D    D+ +       A 
Sbjct: 57  YINEIEQNVMNENLKIIGLDIE--GYKIGRNGTVSIIQICAKDIYIFDLYKCDNSYLFAK 114

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----RTYTNQHGLK 120
            L  +  ++   K+ H  R D ++LF  + + +  +F T+IA  L     +    Q    
Sbjct: 115 YLKELFENKNIIKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQISYD 174

Query: 121 DNLKELL------GINISKAQQSSD--WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           D L + L       I   K     +  +    +S E + YA  DV++L  L L   E L
Sbjct: 175 DLLYKCLFLNNNHKIYFHKIISLDNKIYLKRPISKELIHYAVQDVLYLKPLMLNLVETL 233


>gi|156380461|ref|XP_001631787.1| predicted protein [Nematostella vectensis]
 gi|156218833|gb|EDO39724.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score = 96.6 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 6/155 (3%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           DA+  DTE       +  +C++QL+  D  +         +  P L  +L      K  H
Sbjct: 192 DALGFDTEHCSS---QGLVCVIQLASADKAILWHCHNFNHRMPPGLRSLLT-GNVYKTGH 247

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D  ++   F V  + +  T   ++          L+      LG ++SK  Q S+W
Sbjct: 248 ACLQDAIMISNQFKVHAKNLIDTCHWAKDLHCMPR--SLQAMCAIFLGEHLSKRHQQSNW 305

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
              DLS  Q+ YAA+D      +  +     +RLG
Sbjct: 306 KKSDLSPGQVAYAATDAWVSLRVYQEMKRHGERLG 340


>gi|195026828|ref|XP_001986344.1| GH20576 [Drosophila grimshawi]
 gi|193902344|gb|EDW01211.1| GH20576 [Drosophila grimshawi]
          Length = 995

 Score = 96.6 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 75/192 (39%), Gaps = 23/192 (11%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79
           A+++D E + L   +  + ++++    G   +  +        +  L  +L  ++  K+ 
Sbjct: 545 AVSLDCEGINLGV-KGEITLIEIGTARGEAFLFDVQTCPAMVSDGGLKTLLEHDQVIKVI 603

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLKEL----- 126
           H  R D   L+  FG+ +R VF T+ A  + +   N           L    ++      
Sbjct: 604 HDCRNDAVNLYQQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLCEQYNAPCN 663

Query: 127 -LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLGRSDLA 180
            +   + K     D   W+   L+ E + YAA DV+ L    L     ++++   R   +
Sbjct: 664 PIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLAQQIKPENRVLFS 722

Query: 181 TSCCNFLMDRAE 192
             C   ++ + +
Sbjct: 723 ELCTEQILMQIK 734


>gi|195401414|ref|XP_002059308.1| GJ18283 [Drosophila virilis]
 gi|194142314|gb|EDW58720.1| GJ18283 [Drosophila virilis]
          Length = 1176

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 76/192 (39%), Gaps = 23/192 (11%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79
           AI++D E + L   +  + ++++    G   +  + +      +  L  +L  ++  K+ 
Sbjct: 726 AISLDCEGINLGI-KGEITLIEIGTARGEAFLFDVQSCPAMVSDGGLKTLLEHDQVIKVI 784

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLKEL----- 126
           H  R D   L+  FG+ +R VF T+ A  + +   N           L    ++      
Sbjct: 785 HDCRNDAVNLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLCEQYNAPCN 844

Query: 127 -LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLGRSDLA 180
            +   + K     D   W+   L+ E + YAA DV+ L    L     ++++   R   +
Sbjct: 845 PIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGSLAQQIKPENRQLFS 903

Query: 181 TSCCNFLMDRAE 192
             C   ++ + +
Sbjct: 904 ELCTEQILMQIK 915


>gi|195154607|ref|XP_002018213.1| GL17589 [Drosophila persimilis]
 gi|194114009|gb|EDW36052.1| GL17589 [Drosophila persimilis]
          Length = 831

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 24/193 (12%)

Query: 6   VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V   DI  + AA+     +++D E + L   +  + ++++    G   +  + +      
Sbjct: 550 VFVTDILLKYAAKNEGIVVSLDCEGINLG-LKGEITLIEIGTARGEAFLFDVQSCPAMVT 608

Query: 65  N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116
           +  L  +L  E+  K+ H  R D A L+  FG+ +R VF T+ A  + +   N       
Sbjct: 609 DGGLKTVLEHEQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKA 668

Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRL 165
               L    ++       +   + K     D   W+   L+ E + YAA DV+ L  +  
Sbjct: 669 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVL--IHD 725

Query: 166 QFTEKLQRLGRSD 178
           Q    L R  R +
Sbjct: 726 QLFGSLARQIRPE 738


>gi|198458527|ref|XP_002138553.1| GA24836 [Drosophila pseudoobscura pseudoobscura]
 gi|198136373|gb|EDY69111.1| GA24836 [Drosophila pseudoobscura pseudoobscura]
          Length = 830

 Score = 96.2 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 24/193 (12%)

Query: 6   VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V   DI  + AA+     +++D E + L   +  + ++++    G   +  + +      
Sbjct: 549 VFVTDILLKYAAKNEGIVVSLDCEGINLG-LKGEITLIEIGTARGEAFLFDVQSCPAMVT 607

Query: 65  N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116
           +  L  +L  E+  K+ H  R D A L+  FG+ +R VF T+ A  + +   N       
Sbjct: 608 DGGLKTVLEHEQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKA 667

Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRL 165
               L    ++       +   + K     D   W+   L+ E + YAA DV+ L  +  
Sbjct: 668 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVL--IHD 724

Query: 166 QFTEKLQRLGRSD 178
           Q    L R  R +
Sbjct: 725 QLFGSLARQIRPE 737


>gi|307198047|gb|EFN79100.1| Exonuclease 3'-5' domain-like-containing protein 1 [Harpegnathos
           saltator]
          Length = 831

 Score = 96.2 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKIF 79
            I+ D E + L   + +L +VQ+    G   +  +        A  L  +L  +   K+ 
Sbjct: 420 VISFDCEGINLGV-KGQLTLVQIGTMSGQAYVFDLFTCPSLVQAGGLQKLLEHKNVVKVI 478

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL----- 126
           H  R D   L+  F + +  VF T+ A  + +               L            
Sbjct: 479 HDCRNDSVNLYNQFKIMLTNVFDTQAAHAVLQFQETGKPVYKVKNVNLNTLCDHYGAPCN 538

Query: 127 -LGINIS----KAQQSSDWSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDLA 180
            L   +     K Q+   WS   ++ + L YA+SDV+ L   +    +  ++   +   A
Sbjct: 539 PLKEQLKNIYRKDQRY--WSRRPMTRDMLIYASSDVLSLVPQVYNAMSRLIKPEIQGLFA 596

Query: 181 TSCCNFLMDRAE 192
             C   +     
Sbjct: 597 ELCEEQIQMHIR 608


>gi|118395219|ref|XP_001029962.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89284244|gb|EAR82299.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1087

 Score = 95.8 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 59/173 (34%), Gaps = 14/173 (8%)

Query: 19   YVDAIAVDTETLGLMPRR----DR----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
                I +D E            D+    +C +QLS       I  +   +  + +L  + 
Sbjct: 893  QHQIIGIDLE------YWTDNKDQKLSFICTLQLSTLSSNFVIDILNLSKSVSVHLKSIF 946

Query: 71   VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
               K  K+FH G  D+ +L       +  +F T  A            L    ++ L  N
Sbjct: 947  ESPKFVKVFHGGETDLKLLKKDLNFNLVNIFDTAKAYLKQNKGAGSVSLSSLSQQYLNYN 1006

Query: 131  ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            + K  Q+SDW    L    L YA  D      L       + +   S +A SC
Sbjct: 1007 VDKQYQTSDWRIRPLPKPMLNYAMYDSFITLILFFVMKSTISQEDLSIIAISC 1059


>gi|221485002|gb|EEE23292.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 672

 Score = 95.4 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 70/194 (36%), Gaps = 20/194 (10%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           GD+P   +               L P R  L ++QL+       I +++A     P L  
Sbjct: 181 GDLPPSLSL-----------FASLSP-RPPLALIQLASP-TVACIWQLSALGGLPPGLTA 227

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L+     K+      ++  L   FGV  R   C   A+      TN   L+      L 
Sbjct: 228 LLLRADVVKVTQGATGEVEALQREFGVSPRNFLCLHAAAIALGCATNSRSLQALCGLFLE 287

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             + K+ Q S WS D LS EQ  YAA+D      +     E++               + 
Sbjct: 288 RFLDKSLQLSTWSRDALSPEQCMYAATDAYVSRQVLFGMREQVVP-------KEVMRLVE 340

Query: 189 DRAELDLLGWENVD 202
            +A L L   +N D
Sbjct: 341 AQATLQLRCTQNED 354


>gi|66811680|ref|XP_640019.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|60468043|gb|EAL66053.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 390

 Score = 95.4 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 24/173 (13%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREKI 78
           I +D E + +  + D + +VQ+S  +G + +  I     N       L  +L   K  K+
Sbjct: 187 IGLDIEAIEMGKKGD-ISLVQISTPNGRIYLFDIIKMGANVTPFKYGLKEVLESVKILKV 245

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT------YTNQHGLKDNL-----KELL 127
            H  R D  +LF+ + V +  V+  +IA  L +          ++G  + +     ++  
Sbjct: 246 VHDCRRDSEILFHRYQVALAHVYDVQIAHALVQKKIQGNIPIRRYGFNELIDLYTSRKYS 305

Query: 128 GINIS-K---AQQSSD----WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            I I  K    QQ  +    W+   L  + + YA+ D   L  +      KLQ
Sbjct: 306 EICIDIKFKVKQQFENQPEVWAKRPLPKDFIDYASLDAACLLPIYYHIKPKLQ 358


>gi|237836145|ref|XP_002367370.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211965034|gb|EEB00230.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii
           ME49]
 gi|221505945|gb|EEE31580.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii VEG]
          Length = 672

 Score = 95.4 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 70/194 (36%), Gaps = 20/194 (10%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           GD+P   +               L P R  L ++QL+       I +++A     P L  
Sbjct: 181 GDLPPSLSL-----------FASLSP-RPPLALIQLASP-TVACIWQLSALGGLPPGLTA 227

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L+     K+      ++  L   FGV  R   C   A+      TN   L+      L 
Sbjct: 228 LLLRADVVKVTQGATGEVEALQREFGVSPRNFLCLHAAAIALGCATNSRSLQALCGLFLE 287

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLM 188
             + K+ Q S WS D LS EQ  YAA+D      +     E++               + 
Sbjct: 288 RFLDKSLQLSTWSRDALSPEQCMYAATDAYVSRQVLFGMREQVVP-------KEVMRLVE 340

Query: 189 DRAELDLLGWENVD 202
            +A L L   +N D
Sbjct: 341 AQATLQLRCTQNED 354


>gi|158292666|ref|XP_314043.4| AGAP005155-PA [Anopheles gambiae str. PEST]
 gi|157017099|gb|EAA09562.4| AGAP005155-PA [Anopheles gambiae str. PEST]
          Length = 1064

 Score = 95.4 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 71/197 (36%), Gaps = 21/197 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDE 73
           +      ++ D E + L   R ++ +VQL    G   I  IA          L  +L  E
Sbjct: 552 SLEEQAIVSFDCEGINLGV-RGQITMVQLGTTRGEAFIFDIATCPDMVVEGGLKEILESE 610

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKE 125
           K  K+ H  R D   LF  F + +R VF T+ A  + +               L    + 
Sbjct: 611 KVIKVIHDCRNDSVNLFNQFQILLRNVFDTQSAHAVLQFQDQGKQVYKVKNVSLNTLCEM 670

Query: 126 L-LGINISKAQ----QSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLG 175
               +N  K Q       D   W+   L+ + L YAA DV+ L    L L     ++   
Sbjct: 671 YNATVNPMKDQLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMATSIRPEY 730

Query: 176 RSDLATSCCNFLMDRAE 192
           R  L+  C   ++    
Sbjct: 731 RELLSELCTEQILMLIR 747


>gi|68073827|ref|XP_678828.1| 3'-5' exonuclease [Plasmodium berghei strain ANKA]
 gi|56499420|emb|CAI00231.1| 3'-5' exonuclease, putative [Plasmodium berghei]
          Length = 383

 Score = 95.4 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 13/144 (9%)

Query: 42  VQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           +Q+   D    D+ +       A  L  +  ++   K+ H  R D ++LF  + + +  +
Sbjct: 91  IQICAKDIYIFDLYKCDNSYLFAKYLKELFENKSIIKVTHDCREDCSILFNQYNINLNNI 150

Query: 101 FCTKIASRLT----RTYTNQHGLKDNLKELL------GINISKAQQSSD--WSADDLSDE 148
           F T+IA  L     +    Q    D L + L       I   K    ++  +    +S E
Sbjct: 151 FDTQIAYTLILKKSKKELYQISYDDLLYKCLFLNNNHKIYFHKIISLNNKIYLKRPISKE 210

Query: 149 QLQYAASDVVHLHALRLQFTEKLQ 172
            + YA  DV++L  L L   E L+
Sbjct: 211 LIHYAVQDVLYLKPLMLNLIEVLR 234


>gi|317051081|ref|YP_004112197.1| 3'-5' exonuclease [Desulfurispirillum indicum S5]
 gi|316946165|gb|ADU65641.1| 3'-5' exonuclease [Desulfurispirillum indicum S5]
          Length = 213

 Score = 94.7 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 8/166 (4%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           A  A +    +  DTET     R+ +     ++QL+  +  V + +I+     A  L+ +
Sbjct: 43  ALPALQQCPVLGFDTET-RPTFRKGQFFLPSLIQLATHNH-VYLFQISRFNLPA-GLLEI 99

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
              +   K+     +D+  L        +      IA   TR    Q GL+     L G 
Sbjct: 100 FSSQHIVKVGAGLNYDVKQLQQIAAFDEQSFVD--IAHLATRLGIKQTGLRTLCALLFGK 157

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +SK  + SDWS   LS EQ++YAA+D      L +     L++  
Sbjct: 158 RLSKKARCSDWSRKHLSAEQIKYAAADAWISRELYMALNSLLEKQN 203


>gi|70949124|ref|XP_744002.1| 3'-5' exonuclease [Plasmodium chabaudi chabaudi]
 gi|56523765|emb|CAH76355.1| 3'-5' exonuclease, putative [Plasmodium chabaudi chabaudi]
          Length = 383

 Score = 94.7 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 68/182 (37%), Gaps = 16/182 (8%)

Query: 7   HEGDIPAECAARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGD-GTVDIIRIAAGQKNAP 64
           +  +I        +  I +D E  G    R   + I+Q+   D    D+ +         
Sbjct: 57  YINEIEKNVMNENLKIIGLDIE--GYKIGRNGTVSIIQVCAKDIYIFDLYKCDNSYLFVK 114

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----RTYTNQHGLK 120
            L  +  ++   K+ H  R D ++LF  + + +  +F T+IA  L     +    Q    
Sbjct: 115 YLKELFENKNIIKVAHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQISYD 174

Query: 121 DNLKELL------GINISKAQQSSD--WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           D L + L       I   K     +  +    +S E + YA  DV++L  L L   + L 
Sbjct: 175 DLLYKCLFLNNNHKIYFHKIISLDNKIYLKRPISKELIHYAVQDVLYLKPLMLNLVDTLY 234

Query: 173 RL 174
           R 
Sbjct: 235 RK 236


>gi|240949175|ref|ZP_04753521.1| ribonuclease D [Actinobacillus minor NM305]
 gi|240296407|gb|EER47047.1| ribonuclease D [Actinobacillus minor NM305]
          Length = 250

 Score = 94.7 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%)

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
             ++  L I + K    +DW A  LS+ Q QYAA+DV +L  +  +  ++L         
Sbjct: 1   KLVEHYLHIELDKGASRTDWLARPLSEIQCQYAAADVFYLLPVYQKMQKELSENRWQKAV 60

Query: 181 TSCCNFLMDRAELD 194
              C   ++R   D
Sbjct: 61  EEECQKFLNRKLKD 74


>gi|221468312|ref|NP_726360.3| egalitarian [Drosophila melanogaster]
 gi|220902361|gb|AAF47054.4| egalitarian [Drosophila melanogaster]
          Length = 1004

 Score = 94.3 bits (234), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 24/209 (11%)

Query: 6   VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V   DI  + AA+     +++D E + L   +  + ++++    G   +  + +      
Sbjct: 540 VFVTDIILKYAAKNESIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 598

Query: 65  N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116
           +  L  +L  ++  K+ H  R D A L+  FG+ +R VF T+ A  + +   +       
Sbjct: 599 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 658

Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163
               L    ++       +   + K     D   W+   L+ E + YAA DV+ L    L
Sbjct: 659 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 717

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
                 +++   R+  +  C   ++ + +
Sbjct: 718 FGNLARQIKPENRALFSELCTEQILMQIK 746


>gi|328872117|gb|EGG20484.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 347

 Score = 94.3 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 26/173 (15%)

Query: 22  AIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--NLVGMLVDEKREK 77
            +A D E   +G       + +VQ+   +G V I  I     NA    L  +L  +   K
Sbjct: 145 VVAFDLEGWEMGKN---GEVSLVQIGLKNGRVFIFDIMVLGHNAFKHGLKDLLESKIILK 201

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT------YTNQHGLKDNL-----KEL 126
           I H  R D  +L++ + V +  V+  +IA  L +          + GL +       K  
Sbjct: 202 IVHDCRRDSEILYHRYQVTLDHVYDIQIAHALLQKKKEGNVPIRRFGLAELTDLYAPKPY 261

Query: 127 LGINISKAQQSSD--------WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               I+   +  D        W    L    + Y A DV+ L  +    T +L
Sbjct: 262 AQQAINVKHKGRDLFKNNLDIWRQRPLPPTIIDYCALDVIVLLPIYNILTPQL 314


>gi|33589402|gb|AAQ22468.1| RE33408p [Drosophila melanogaster]
          Length = 1004

 Score = 94.3 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 24/209 (11%)

Query: 6   VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V   DI  + AA+     +++D E + L   +  + ++++    G   +  + +      
Sbjct: 540 VFVTDIILKYAAKNESIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 598

Query: 65  N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116
           +  L  +L  ++  K+ H  R D A L+  FG+ +R VF T+ A  + +   +       
Sbjct: 599 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 658

Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163
               L    ++       +   + K     D   W+   L+ E + YAA DV+ L    L
Sbjct: 659 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 717

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
                 +++   R+  +  C   ++ + +
Sbjct: 718 FGNLARQIKPENRALFSELCTEQILMQIK 746


>gi|195586140|ref|XP_002082836.1| GD25020 [Drosophila simulans]
 gi|194194845|gb|EDX08421.1| GD25020 [Drosophila simulans]
          Length = 860

 Score = 94.3 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 24/209 (11%)

Query: 6   VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V   DI  + AA+     +++D E + L   +  + ++++    G   +  + +      
Sbjct: 538 VFVTDIILKYAAKNESIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 596

Query: 65  N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116
           +  L  +L  ++  K+ H  R D A L+  FG+ +R VF T+ A  + +   +       
Sbjct: 597 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 656

Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163
               L    ++       +   + K     D   W+   L+ E + YAA DV+ L    L
Sbjct: 657 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 715

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
                 +++   R+  +  C   ++ + +
Sbjct: 716 FGNLARQIKPENRALFSELCTEQILMQIK 744


>gi|194885564|ref|XP_001976457.1| GG20003 [Drosophila erecta]
 gi|190659644|gb|EDV56857.1| GG20003 [Drosophila erecta]
          Length = 824

 Score = 94.3 bits (234), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 84/209 (40%), Gaps = 24/209 (11%)

Query: 6   VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V   DI  + AA+  +  +++D E + L   +  + ++++    G   +  + +      
Sbjct: 543 VFVTDIILKYAAKNENIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 601

Query: 65  N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116
           +  L  +L  ++  K+ H  R D A L+  FG+ +R VF T+ A  + +   +       
Sbjct: 602 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 661

Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163
               L    ++       +   + K     D   W+   L+ E + YAA DV+ L    L
Sbjct: 662 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 720

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
                 +++   R+  +  C   ++ + +
Sbjct: 721 FGNLARQIKPENRALFSELCTEQILMQIK 749


>gi|91084227|ref|XP_969046.1| PREDICTED: similar to egalitarian CG4051-PA [Tribolium castaneum]
 gi|270009271|gb|EFA05719.1| egalitarian [Tribolium castaneum]
          Length = 812

 Score = 94.3 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 22/182 (12%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR-IAAGQKNAPNLVGMLVDEKREKIFH 80
            + +D E + L   + +L ++Q++   G   +   I         L  +L   +  KI H
Sbjct: 416 VVGLDCEGINLGV-KGQLTLLQIATMSGFSYVFDLITCPGMIDSGLKKLLESSQIVKIVH 474

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKELLGINIS 132
             R D   LF  F + +  +F T+ A  +                 L    +   G  I+
Sbjct: 475 DCRNDSVNLFNQFNITLNTIFDTQAAHAVLTFQETGRPVYKAKSVALNALCEHY-GAPIN 533

Query: 133 ------KAQQSSD---WSADDLSDEQLQYAASDVVHLH--ALRLQFTEKLQRLGRSDLAT 181
                 K     D   WS   L+ E + YA++DV+ L    +    ++ ++   R     
Sbjct: 534 PMKDQLKNIYRRDQKYWSRRPLTREMILYASADVLSLVNEKIYYPMSKAIKMENRQLFLE 593

Query: 182 SC 183
            C
Sbjct: 594 LC 595


>gi|38681451|gb|AAB49975.2| egalitarian [Drosophila melanogaster]
          Length = 993

 Score = 94.3 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 24/209 (11%)

Query: 6   VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V   DI  + AA+     +++D E + L   +  + ++++    G   +  + +      
Sbjct: 529 VFVTDIILKYAAKNESIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 587

Query: 65  N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116
           +  L  +L  ++  K+ H  R D A L+  FG+ +R VF T+ A  + +   +       
Sbjct: 588 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 647

Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163
               L    ++       +   + K     D   W+   L+ E + YAA DV+ L    L
Sbjct: 648 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 706

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
                 +++   R+  +  C   ++ + +
Sbjct: 707 FGNLARQIKPENRALFSELCTEQILMQIK 735


>gi|194755160|ref|XP_001959860.1| GF11823 [Drosophila ananassae]
 gi|190621158|gb|EDV36682.1| GF11823 [Drosophila ananassae]
          Length = 1018

 Score = 93.9 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 23/176 (13%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79
            +++D E + L   +  + ++++    G   +  + +      +  L  +L  E+  K+ 
Sbjct: 571 VVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMITDGGLKTVLEHEQVIKVI 629

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLKEL----- 126
           H  R D A L+  FG+ +R VF T+ A  + +   +           L    ++      
Sbjct: 630 HDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISLNSLCEQYNAPCN 689

Query: 127 -LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            +   + K     D   W+   L+ E + YAA DV+ L  +  Q    L R  + +
Sbjct: 690 PIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVL--IHDQLFGNLARQIKPE 742


>gi|68074103|ref|XP_678966.1| exonuclease [Plasmodium berghei strain ANKA]
 gi|56499594|emb|CAI04586.1| exonuclease, putative [Plasmodium berghei]
          Length = 406

 Score = 93.9 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 73/203 (35%), Gaps = 32/203 (15%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPG--------DGTVDIIRIAAGQKNAPNLVGMLVD 72
           D IAVD E   L     ++C++Q+           +       +     N+  +  ++ +
Sbjct: 103 DIIAVDFEGTNLGRY-GKICLMQIYTEIEKKDKVFEKYYIFDLLNKSVINS--VKKIIEN 159

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-----RTYTNQHGLKDNLKELL 127
           +K  K+ H  R D + L+    ++   V+ T  A  L           Q    + L + L
Sbjct: 160 KKTLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLLLEKKKENDIYQISFLNLLHDYL 219

Query: 128 GINIS-----KAQQSSD---WSADDLSDEQLQYAASDVVHLHALR---LQFTEKLQRLGR 176
           G         K +   +   W    LS   + YA  +V +L  +     +   K + L +
Sbjct: 220 GFKDDCLNNIKKEMYKNERIWEIRPLSKISIIYALKNVKYLLPIYKIFDKLISKKEVLEK 279

Query: 177 S-DLATSCCNFLMDRAEL--DLL 196
           S D    C   L  R +L  DL 
Sbjct: 280 SKDFVNYCF--LNSRYKLPVDLA 300


>gi|195347186|ref|XP_002040135.1| GM15515 [Drosophila sechellia]
 gi|194135484|gb|EDW57000.1| GM15515 [Drosophila sechellia]
          Length = 1035

 Score = 93.9 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 83/209 (39%), Gaps = 24/209 (11%)

Query: 6   VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V   DI  + AA+     +++D E + L   +  + ++++    G   +  + +      
Sbjct: 608 VFVTDIILKYAAKNESIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 666

Query: 65  N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116
           +  L  +L  ++  K+ H  R D A L+  FG+ +R VF T+ A  + +   +       
Sbjct: 667 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKA 726

Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163
               L    ++       +   + K     D   W+   L+ E + YAA DV+ L    L
Sbjct: 727 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 785

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
                 +++   R+  +  C   ++ + +
Sbjct: 786 FGNLARQIKPENRALFSELCTEQILMQIK 814


>gi|195489284|ref|XP_002092670.1| GE11539 [Drosophila yakuba]
 gi|194178771|gb|EDW92382.1| GE11539 [Drosophila yakuba]
          Length = 1009

 Score = 93.5 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 84/209 (40%), Gaps = 24/209 (11%)

Query: 6   VHEGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V   DI  + AA+  +  +++D E + L   +  + ++++    G   +  + +      
Sbjct: 545 VFVTDIILKYAAKNENIVVSLDCEGINLG-LKGEITLIEIGTTRGEAFLFDVQSCPAMVT 603

Query: 65  N--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ------ 116
           +  L  +L  ++  K+ H  R D A L+  FG+ +R VF T+ A  + +   +       
Sbjct: 604 DGGLKTVLEHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQSAHAILQYQESGKQVYKA 663

Query: 117 --HGLKDNLKEL------LGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLH--AL 163
               L    ++       +   + K     D   W+   L+ E + YAA DV+ L    L
Sbjct: 664 KYISLNSLCEQYNAPCNPIKDQL-KQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQL 722

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
                 +++   R+  +  C   ++ + +
Sbjct: 723 FGNLARQIKPENRALFSELCTEQILMQIK 751


>gi|325842732|ref|ZP_08167767.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
 gi|325489532|gb|EGC91897.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
          Length = 232

 Score = 93.5 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 63/179 (35%), Gaps = 8/179 (4%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           Y   I VD ET GL    D + ++ +   D            ++   +  +L D    K+
Sbjct: 61  YSKIIGVDIETTGLDFLEDSIRLIAVYSED-------FEYVGEDLEAVKTLLTDPSVLKV 113

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           FH+ +FD+       G+ V     T I +++         L    K  LG ++ K+ Q +
Sbjct: 114 FHHSQFDV-CFLKKAGIDVCTFTDTFIMNQILNNLPVFDSLSRLAKVYLGKSLDKSLQHA 172

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           D    DL+ E   Y   D    + L     + +               L    EL L G
Sbjct: 173 DNWQSDLTQEHYAYCLDDAKTTYELYQHMFDLIINRYLYPRYRREIETLPAIVELTLNG 231


>gi|326513036|dbj|BAK03425.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 490

 Score = 92.4 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 34/168 (20%)

Query: 37  DRLCIVQLS----PGDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKI-FHYGRFDI--- 86
             + ++QL+     G   V ++ +           L  +       K+ F + + D+   
Sbjct: 69  PTVTVLQLACRGEDGGNEVFVVDLLAVPLADLWAPLRELFERPDVLKLGFRF-KQDLVYL 127

Query: 87  -AVLFYTFGVR-----------VRPVF------CTKIASRLTRTYTNQHGLKDNLKELLG 128
            A      G             V  V+       T+     TR       L    +ELL 
Sbjct: 128 SATFTAALGCDSGFNRVEPFLDVTNVYYYLKGHDTQ-----TRLPKETKSLASICEELLN 182

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           +++SK  Q SDWS   LS+ Q+QYAASD  +L  +   F +K+    +
Sbjct: 183 VSLSKELQCSDWSCRPLSEGQIQYAASDAYYLLYIFDLFHQKVSIEEK 230


>gi|328780055|ref|XP_623215.2| PREDICTED: hypothetical protein LOC550822 isoform 1 [Apis
           mellifera]
          Length = 664

 Score = 91.6 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 20/172 (11%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKIF 79
            ++ D E + L   + +L +VQ+    G   +  +        A  L  +L  +   K+ 
Sbjct: 251 VVSFDCEGINLGV-KGQLTLVQIGTMSGQAYVFDLFACPNLVQAGGLQKLLEHKDVIKVI 309

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL----- 126
           H  R D   L+  F + +  VF T+ A  + +               L            
Sbjct: 310 HDCRNDSVNLYRQFKIMLNNVFDTQAAHAVLQFQETGKPVYKVKNVNLNTLCDHYGAPSN 369

Query: 127 -LGINISKAQQS--SDWSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRL 174
            L   +    ++    W    L+ + L YA+SDV+ L   + +  +  ++  
Sbjct: 370 PLKEQLKNIYRNNQRYWCRRPLTRDMLIYASSDVLSLVPQIYISMSRLIKPE 421


>gi|221053416|ref|XP_002258082.1| exonuclease [Plasmodium knowlesi strain H]
 gi|193807915|emb|CAQ38619.1| exonuclease, putative [Plasmodium knowlesi strain H]
          Length = 414

 Score = 91.6 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 71/204 (34%), Gaps = 33/204 (16%)

Query: 2   TTIRVHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLSPGDGT-------- 50
             I++ E +     AA  +   D IAVD E   L     ++CI+Q+   + T        
Sbjct: 81  KDIKIVENEKEGNDAAEEINRNDIIAVDFEGTNLGKY-GKVCIMQVYTEERTPGGVHPKS 139

Query: 51  -------VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
                    I  +            ++ ++K  K+ H  R D + L+   G++   V+ T
Sbjct: 140 ECLSREKYYIFDLLKMSVIKSV-KKIIENKKTLKLVHDCREDSSALYNQLGIKFENVYDT 198

Query: 104 KIASRLT-----RTYTNQHGLKDNLKELLGINIS-----KAQQSSD---WSADDLSDEQL 150
             A  L       +   Q      L + LGI        K +   +   W    LS   +
Sbjct: 199 SRAHMLLMEKNRNSDIYQVSFLQLLNDYLGIKDDCLSSIKKEMYKNEKIWEVRPLSKMSI 258

Query: 151 QYAASDVVHLHALRLQFTEKLQRL 174
            YA  +V +L  L   F   L + 
Sbjct: 259 IYALKNVKYLFPLYRIFDNMLSKK 282


>gi|307176637|gb|EFN66105.1| Probable exonuclease mut-7-like protein [Camponotus floridanus]
          Length = 1053

 Score = 91.2 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 27/189 (14%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           R+ E  +      + V  + +D E       ++  L ++Q++  D  V I+ +       
Sbjct: 387 RLFEEFLDNGL--KNVTIVGIDLEWKPSFGTKQPELALIQIATED-NVYILDVTTLGNEL 443

Query: 64  PNLV-----GMLVDEKREKIFHYGRFDIAVLFYTFGVRV------RPVFCTKIA-SRLTR 111
           P L       +  ++   KI      DI V+  +           +      I   +LT 
Sbjct: 444 PELWVELGLTLFGNKNIVKIGFGIAHDITVIRNSIPALSSIKNHGQGYLDLMILWRKLTE 503

Query: 112 TY-----------TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            Y                L   ++   G  + K+ Q S+W    L + Q+ YAA D   L
Sbjct: 504 DYNFIFPYKGDPNFTSKSLSKLVELCFGQRLDKSDQFSNWELRPLRESQIIYAALDAYCL 563

Query: 161 HALRLQFTE 169
             +     +
Sbjct: 564 LEIYKVLAD 572


>gi|221053221|ref|XP_002257985.1| 3'-5' exonuclease [Plasmodium knowlesi strain H]
 gi|193807817|emb|CAQ38522.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H]
          Length = 384

 Score = 91.2 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 18/176 (10%)

Query: 23  IAVDTETLGLMPRR-DRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           I +D E  G    R   + +VQ+   D    D+ +          L  +L D +  KI H
Sbjct: 78  IGLDVE--GYKIGRNGTVSLVQICAQDVYLFDVYKCDNTFLFIKCLKELLEDGRIVKITH 135

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT----NQHGLKDNLKELL------GIN 130
             R D ++LF  + + +  +F T++A  L    T     Q    D L + L       I 
Sbjct: 136 DCREDCSILFNQYSISLNNIFDTQVAYNLLSKETKKDLYQISYDDLLYKCLLLHNKHKIY 195

Query: 131 ISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             K     D   +    +  E + YA  DV++L  L L   ++L R+ +   A S 
Sbjct: 196 FHKMISL-DQKIYLKRPIGKELIHYAIQDVIYLKPLMLNLVDRLLRVCKDGEARSE 250


>gi|313205201|ref|YP_004043858.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
 gi|312444517|gb|ADQ80873.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
          Length = 231

 Score = 90.8 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 10/176 (5%)

Query: 12  PAECAARYVDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           PA    R    + +DTET     R    ++ +VQ+S  D    + R+      A  L   
Sbjct: 34  PAIAELRKSKVVGIDTETKPSFTRGTYHKVSLVQISTLDHCF-LFRLNKIDFPA-ALAEF 91

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLG 128
           L DE  +KI    R D+  L      +       +    + ++Y   + GL+     L G
Sbjct: 92  LSDENIKKIGLSLRDDLNGLNKHHAFKPANCVDIQ---TIVQSYGILELGLQKIYAILFG 148

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF--TEKLQRLGRSDLATS 182
             ISK+Q+ ++W   +L+++Q +YAA+D      + LQ    +KL +     +   
Sbjct: 149 KKISKSQRLTNWENPELTEQQQRYAATDAWASLQIYLQLMSEKKLTKKQIDKILQQ 204


>gi|125558189|gb|EAZ03725.1| hypothetical protein OsI_25856 [Oryza sativa Indica Group]
          Length = 501

 Score = 90.4 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 19/143 (13%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKI-FHYGRFDIAVLFYTFGV---------RVRPV 100
           VD++ +   +   P L  +    +  K+ F + + D+  L  TF           RV P 
Sbjct: 100 VDLLAVPLAELREP-LRELFERPEVLKLGFRF-KQDLVYLSATFAAALGSSAGFERVEPF 157

Query: 101 FCTKIASRLTRTYTNQH-------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
                A    + +  Q         L    +ELLG+ +SK  Q SDWS   LS+ Q+QYA
Sbjct: 158 LDVTNAYYYLKGHDMQKRLPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYA 217

Query: 154 ASDVVHLHALRLQFTEKLQRLGR 176
           ASD  +L  +   F +K++  G+
Sbjct: 218 ASDAYYLLDIFDLFHQKIRTEGK 240


>gi|115471903|ref|NP_001059550.1| Os07g0452400 [Oryza sativa Japonica Group]
 gi|113611086|dbj|BAF21464.1| Os07g0452400 [Oryza sativa Japonica Group]
          Length = 501

 Score = 90.4 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 19/143 (13%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKI-FHYGRFDIAVLFYTFGV---------RVRPV 100
           VD++ +   +   P L  +    +  K+ F + + D+  L  TF           RV P 
Sbjct: 100 VDLLAVPLAELREP-LRELFERPEVLKLGFRF-KQDLVYLSATFAAALGSSAGFERVEPF 157

Query: 101 FCTKIASRLTRTYTNQH-------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
                A    + +  Q         L    +ELLG+ +SK  Q SDWS   LS+ Q+QYA
Sbjct: 158 LDVTNAYYYLKGHDMQKRLPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYA 217

Query: 154 ASDVVHLHALRLQFTEKLQRLGR 176
           ASD  +L  +   F +K++  G+
Sbjct: 218 ASDAYYLLDIFDLFHQKIRTEGK 240


>gi|303272145|ref|XP_003055434.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463408|gb|EEH60686.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 590

 Score = 90.4 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 24/172 (13%)

Query: 16  AARYVDAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-------LV 67
           A  +   + +D E     P  R  + I+Q++       +   A    +AP        L 
Sbjct: 118 AEGHPPVVGLDGE---WKPGSRTPVSILQVATRADAFVVDLFATAPPDAPASDALDAFLA 174

Query: 68  GMLVDEKREKIFHYGRFDI----------AVLFYTFG-VRVRPVFCTKIASRLTRTYT-- 114
            +L  E+  K+     +D+            L    G  + R +   K  + +       
Sbjct: 175 DLLGSERIYKLGFSFGYDLSRMRASYPHLRSLRVGAGHPQPRAMIDVKQVANVASANRMN 234

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
            + GL    K  LG  +SKA+Q SDWS   L+  QL YAA+D  +L  +  +
Sbjct: 235 TRVGLATLTKFTLGATLSKAEQCSDWSRRPLTAAQLSYAAADAFYLCVIFDK 286


>gi|326435716|gb|EGD81286.1| hypothetical protein PTSG_11323 [Salpingoeca sp. ATCC 50818]
          Length = 1526

 Score = 90.4 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 7/142 (4%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLV-GMLVDEKREKIFHYGRFDIAVLFYTFG-- 94
           R+ I+Q++  D  V +  +A    +    V  +  D    K+      D+ +L  TF   
Sbjct: 654 RVSILQIARHDALVILDMLALEPAHFHAFVTDLFADPAIIKVGFAFDGDMKMLRKTFPDA 713

Query: 95  ---VRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL 150
                +R +   +     LT       GLK+ ++  +   + K +Q S+W+   L+  QL
Sbjct: 714 ECFSTLRSLLDLQSFRHALTSAGPKSGGLKELVRHFMHKPLDKTEQMSNWNRRPLTPSQL 773

Query: 151 QYAASDVVHLHALRLQFTEKLQ 172
            YAA D     +L  +  + L 
Sbjct: 774 HYAALDAHVCVSLAERMLQALA 795


>gi|117924196|ref|YP_864813.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
 gi|117607952|gb|ABK43407.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
          Length = 238

 Score = 90.4 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 62/162 (38%), Gaps = 9/162 (5%)

Query: 11  IPAECAA-RYVDAIAVDTET---LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           +PA  AA R    +  DTET          D   ++QL+ G+  V + +I   Q + P L
Sbjct: 41  LPAAIAALRQERVLGFDTETRPSFRKGTSYDPT-LIQLA-GEKVVYLFQINLLQDHRP-L 97

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+      DI  L   F  +          +R         GL+      
Sbjct: 98  AELLADTSIHKVGVGLSQDIRQLQAIFSFKPGGFVDVGETAR--HNNIATRGLRSMAAAF 155

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             + ISK  Q S+W+ + L   Q+ YAA+D      L +   
Sbjct: 156 FHVRISKRAQCSNWAQEALQPFQIIYAATDAWISRELYVALA 197


>gi|34394896|dbj|BAC84412.1| unknown protein [Oryza sativa Japonica Group]
          Length = 501

 Score = 90.1 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 19/143 (13%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKI-FHYGRFDIAVLFYTFGV---------RVRPV 100
           VD++ +   +   P L  +    +  K+ F + + D+  L  TF           RV P 
Sbjct: 100 VDLLAVPLAELREP-LRELFERPEVLKLGFRF-KQDLVYLSATFAAALGSSAGFERVEPF 157

Query: 101 FCTKIASRLTRTYTNQH-------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
                A    + +  Q         L    +ELLG+ +SK  Q SDWS   LS+ Q+QYA
Sbjct: 158 LDVTNAYYYLKGHDMQKRLPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYA 217

Query: 154 ASDVVHLHALRLQFTEKLQRLGR 176
           ASD  +L  +   F +K++  G+
Sbjct: 218 ASDAYYLLDIFDLFHQKIRTEGK 240


>gi|157133260|ref|XP_001656205.1| 3-5 exonuclease [Aedes aegypti]
 gi|108870910|gb|EAT35135.1| 3-5 exonuclease [Aedes aegypti]
          Length = 771

 Score = 89.7 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 3/155 (1%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +  D E +    +R  + ++QL+   G   +IR+   ++  P L  +L D    K
Sbjct: 67  REFRVLGFDCEWVNEQGKRHPVALLQLATHRGLCALIRLCEMKRIPPELGELLNDPAIVK 126

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135
           +      D  +L + + ++V      +  +         +G+    ++ LG+ + K    
Sbjct: 127 VGVGPLEDAKLLRHDYNLKVESTLDLRHLADRCGVPGP-YGMAKLAEKTLGVKLDKHWRI 185

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           ++S+W    L++ Q+QYAASD      L   F +K
Sbjct: 186 RASNWENAQLTERQIQYAASDAHVAVELFRTFAKK 220


>gi|170048985|ref|XP_001853674.1| 3'-5' exonuclease [Culex quinquefasciatus]
 gi|167870951|gb|EDS34334.1| 3'-5' exonuclease [Culex quinquefasciatus]
          Length = 755

 Score = 89.7 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 11/181 (6%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R    +  D E +    +R  + ++QL+   G   +IR+   ++  P L  +L D    K
Sbjct: 68  RDYRILGFDCEWVTEKGKRHPVALLQLASHQGLCALIRLCQMKRIPPELGELLNDPGILK 127

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135
           +      D  +L   + ++V      +  +   R     +G+    ++ LG+ + K    
Sbjct: 128 VGIGAIEDAQLLRSDYNLKVESALDLRHLAERCRVPGP-YGMARLAEKSLGLQLDKHWRV 186

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG----RSDLATSCCNFLMDRA 191
           ++SDW A +LS+ QL+YAA+D      L   + +++ R G    R        + LM   
Sbjct: 187 RASDWEALELSERQLKYAANDAHVAVELFRLYADRVLRCGIFTTRKKW----FDSLMTEI 242

Query: 192 E 192
           E
Sbjct: 243 E 243


>gi|303325512|ref|ZP_07355955.1| 3'- 5' exonuclease domain protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863428|gb|EFL86359.1| 3'- 5' exonuclease domain protein [Desulfovibrio sp. 3_1_syn3]
          Length = 216

 Score = 89.7 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 8/169 (4%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQ 60
           IRV E    A    R    +  DTET     R+ ++    ++QL+  +  V ++++A   
Sbjct: 26  IRVLEDWKQALPDLRADGVLGFDTET-RPTFRKGKINAPSLIQLAT-ERAVYLVQLA-WL 82

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P+L  +L D    K     R D+  L          +     A+R         GL+
Sbjct: 83  PFGPHLAEILADPNVIKAGVGIRDDMRELSRLHDFEPAGLVDLGNAAR--AHKLPSQGLR 140

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
                L G  ISK  Q S+WS  +LS  Q+ YAA+D      + L+  E
Sbjct: 141 TLAANLFGWRISKGSQCSNWSLMELSQRQIAYAATDAWIGRLIFLRMRE 189


>gi|156097777|ref|XP_001614921.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148803795|gb|EDL45194.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
          Length = 414

 Score = 89.3 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 33/204 (16%)

Query: 2   TTIRVHEGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLSPGDGT-------- 50
             I++ E +     AA  +   D IAVD E   L     ++CI+Q+   + T        
Sbjct: 81  KDIKIVENEKEGNDAAEEINQNDIIAVDFEGTNLGKY-GKVCIMQVYTEERTREGTPPQS 139

Query: 51  -------VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
                    I  +            ++ ++K  K+ H  R D + L+   G++   V+ T
Sbjct: 140 ECISREKYYIFDLLKMSVIKSV-KKIIENKKTLKLVHDCREDSSALYNQLGIKFENVYDT 198

Query: 104 KIASRLTRTYT-----NQHGLKDNLKELLGIN---IS--KAQQSSD---WSADDLSDEQL 150
             A  L           Q      L + LGI    +S  K +   +   W    LS   +
Sbjct: 199 SRAHMLLMEKNKSNDIYQVSFLQLLNDYLGIKDECLSSIKKEMYKNEKIWQVRPLSKMSI 258

Query: 151 QYAASDVVHLHALRLQFTEKLQRL 174
            YA  +V +L  L   F   L + 
Sbjct: 259 IYALKNVKYLFPLYRIFDNMLPKK 282


>gi|224135103|ref|XP_002321984.1| predicted protein [Populus trichocarpa]
 gi|222868980|gb|EEF06111.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score = 89.3 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 32/194 (16%)

Query: 16  AARYVDAIAVDTET--LGLMPRRDR---LCIVQL-------SPGDGTVDIIRIAAGQKN- 62
           +      I +D E   +     +     + ++QL       S    T  +   +    + 
Sbjct: 28  SLTRSSIIGLDAEWKPIRGQTHQPTFPTVSLLQLACQLGHDSDESETFLLDLHSVPLPSI 87

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVFC--------TKIASRLTR 111
              L    V     K+    + D+  L  TF   G      F         T I  ++  
Sbjct: 88  WELLRETFVSPDILKLGFKFKQDLVYLSSTFCLQGCDPG--FDKVEPYLDITSIYYQMQH 145

Query: 112 TYTNQHG------LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
               + G      L    KE+LGI++SK  Q SDWS   L++EQ  YAA+D   L  +  
Sbjct: 146 KQQGRKGPKETKSLATICKEVLGISLSKELQCSDWSHRPLTEEQKTYAAADAHCLLKIFN 205

Query: 166 QFTEKLQRLGRSDL 179
            F + + + G   L
Sbjct: 206 VFQDNIVKKGSWWL 219


>gi|307172596|gb|EFN63955.1| Exonuclease 3'-5' domain-like-containing protein 1 [Camponotus
           floridanus]
          Length = 651

 Score = 88.9 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79
            ++ D E + L   + +L +VQ+    G   +  +    +   +  L  +L      K+ 
Sbjct: 244 VVSFDCEGINLGV-KGQLTLVQIGTMSGQAYMFDLFTCPRLVQDGGLQKLLEHPHVIKVI 302

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY--------TNQHGLKDNLKEL----- 126
           H  R D   L+  F + +  VF T+ A  + +               L            
Sbjct: 303 HDCRNDSVNLYNQFTITLMNVFDTQAAHAVLQFQETGKPVYKVKNVNLNTLCDHYGAPCN 362

Query: 127 -LGINIS----KAQQSSDWSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDLA 180
            L   +     K Q+   WS   ++ + L YA+SDV+ L   +    +  ++   +   A
Sbjct: 363 PLKEQLKNIYRKDQRY--WSRRPMTRDMLIYASSDVLSLVPQVYNAMSRLIKPEVQGLFA 420

Query: 181 TSCCNFLMDRAE 192
             C   +     
Sbjct: 421 ELCEEQIQMHIR 432


>gi|312375236|gb|EFR22650.1| hypothetical protein AND_14417 [Anopheles darlingi]
          Length = 782

 Score = 88.9 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 11/181 (6%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +    +  D E +    +R  + ++QL+   G   +IR+    K    L  +L D+   K
Sbjct: 73  QEYKVLGFDCEWVSNQGQRRPVALLQLASHRGLCALIRLCMINKLPQELYDLLNDDNIIK 132

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135
           +      D  +L   + ++V      +  +   R      G+     E+LG+ + K    
Sbjct: 133 VGVSPYEDARLLREDYKLKVESTLDLRFMAE--RAGLEPFGIARLANEVLGLTLDKHWKI 190

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-------QRLGRSDLATSCCNFLM 188
           + SDW A DLSD Q++YAASD      L  +F  KL        R    D      +  M
Sbjct: 191 RCSDWEAPDLSDRQIKYAASDAHVAVELFKKFAYKLVPHYPWTSRKVVLDQVLEEMDCFM 250

Query: 189 D 189
           D
Sbjct: 251 D 251


>gi|325068901|ref|ZP_08127574.1| ribonuclease D [Actinomyces oris K20]
          Length = 289

 Score = 88.5 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            GL   ++E LG+ ++K   ++DWS   L    L YAA DV  L  LR     +L+  G+
Sbjct: 7   VGLGAVIEETLGLRLAKDHAAADWSTRPLPASWLTYAALDVELLIDLRDALATELEAAGK 66

Query: 177 SDLATSCCNFLMDR 190
              A      +  +
Sbjct: 67  DQWAAQEFEHVRTK 80


>gi|124512300|ref|XP_001349283.1| exonuclease, putative [Plasmodium falciparum 3D7]
 gi|23499052|emb|CAD51132.1| exonuclease, putative [Plasmodium falciparum 3D7]
          Length = 406

 Score = 88.5 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 26/180 (14%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-----------VDIIRIAAGQKNAPNLV 67
             + IA+D E   L     ++C++Q+                   I  +           
Sbjct: 97  RSEIIAIDFEGTNLGRY-GKVCLMQVYVEKKNMNEQSDNILQKYYIFDLLKTSVIKSA-Q 154

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-----RTYTNQHGLKDN 122
            ++ ++K  K+ H  R D + L+   G+++  V+ T  A  L      +    Q      
Sbjct: 155 KIIENKKTLKLIHDCREDSSALYNQLGMKLENVYDTSRAHLLLMEKQKKNDIYQVSFAQL 214

Query: 123 LKELLGIN---IS--KAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           + + LGIN   +S  K +   +   W    LS+  + YA  +V +L+ L   F + L + 
Sbjct: 215 INDYLGINDASLSFIKKEMYKNEKIWETRPLSNISIIYALKNVKYLYKLYKIFDKLLPKK 274


>gi|308801591|ref|XP_003078109.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
 gi|116056560|emb|CAL52849.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
          Length = 1313

 Score = 88.5 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 38/184 (20%)

Query: 21  DAIAVDTE--------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-----LV 67
             I +DTE                D + I+Q++   G V I+ +     + P+     + 
Sbjct: 379 GMIGIDTEWGADVGEDADNADRSGDEVAILQIASQLG-VVILDVPKLLYSCPDTLETTIG 437

Query: 68  GMLVDEKREKIFHYGRFDIAVLF--YTFGVRVRPVFCTKIA------------------- 106
            M  DE+  K+    + D+  L   +     V+ V   +                     
Sbjct: 438 KMFEDEEVLKLGFAVQEDLRRLSKCHKAFKTVQGVVDLQKLWKLLVSKARTRSVSAPWST 497

Query: 107 -SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
            + L R      GL   +  +LG  + K  + SDWS   L+  Q++YAA D   L  +  
Sbjct: 498 EAELLRYQP--VGLSALVAAVLGKPLDKMMRMSDWSRRPLTQSQMEYAALDAWTLVEVHR 555

Query: 166 QFTE 169
              E
Sbjct: 556 TLLE 559


>gi|118379202|ref|XP_001022768.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89304535|gb|EAS02523.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 645

 Score = 88.1 bits (218), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ----QSSDW 140
           DI  L   + + +   F  + A+           L   L++     + K +    Q S+W
Sbjct: 54  DIVWLQRDYDILISNYFDIQTAAIFLNK-DESWSLTYLLQKYCDYTLEKKEKKQLQLSEW 112

Query: 141 SADDLSDEQLQYAASDVVHLHAL-RLQFTEKLQRL 174
           S   LS+EQL YAA D   L  +      E ++RL
Sbjct: 113 SDRPLSEEQLNYAALDSHFLIKIRYELLHEMIKRL 147


>gi|332030729|gb|EGI70405.1| Putative exonuclease mut-7-like protein [Acromyrmex echinatior]
          Length = 955

 Score = 88.1 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 27/189 (14%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           R+ E  +      R V+ + +D E       ++  L ++Q++  D  V I+ +       
Sbjct: 349 RLFEEFLDNGL--RDVNIVGIDLEWKPSFGTKQPELALMQVATED-NVYILDVTTIGDKL 405

Query: 64  PNLVG-----MLVDEKREKIFHYGRFDIAVLFYTF------GVRVRPVFCTKIA-SRLTR 111
             L       +  ++   KI      D+ V+  +           +      +   +L  
Sbjct: 406 LELWNELGLVLFGNKDIIKIGFGIAQDMTVIRNSLPALSSIKTHGQGYLDLMLLWRKLVE 465

Query: 112 TY-----------TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            Y                L   ++   G  + K+ Q S+W    L + Q+ YAA D   L
Sbjct: 466 EYNFVFPYKGDPNFTNRSLSKLVELCFGQRLDKSDQFSNWELRPLRESQIIYAALDAYCL 525

Query: 161 HALRLQFTE 169
             +     +
Sbjct: 526 LEIYNVLAD 534


>gi|328698648|ref|XP_001946371.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           [Acyrthosiphon pisum]
          Length = 522

 Score = 87.7 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
           E +A Y+  + +D E +     R  + ++Q++  +G   +IR++  +    +L  +L + 
Sbjct: 51  EKSASYLPILGLDCEWVTQNGIRQPVALLQIADNNGMCSLIRLSKFKTIPSSLSDILSNS 110

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              K+      D  +L   + + V      +  ++   +   +  L     +LLG  + K
Sbjct: 111 NIIKVGVAILDDAHLLMNDYNINVSGCIDLRYLAK--ESCLEERSLSALAFKLLGCELDK 168

Query: 134 AQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
               ++SDW A++L+D Q +YAA D      +  Q   K  ++   +       FL D+ 
Sbjct: 169 DWHVRASDWEAEELNDRQTEYAALDAYVAVKIFEQLRNK--KISWWNWL-----FLTDKQ 221

Query: 192 ELD 194
           + D
Sbjct: 222 KWD 224


>gi|320352196|ref|YP_004193535.1| 3'-5' exonuclease [Desulfobulbus propionicus DSM 2032]
 gi|320120698|gb|ADW16244.1| 3'-5' exonuclease [Desulfobulbus propionicus DSM 2032]
          Length = 210

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 13/163 (7%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           + A   +R    +  DTET    P   +       ++QL+  D  V + ++       P 
Sbjct: 42  LAAAHLSRAA-LLGFDTET---RPAFRKGQKFSPSLLQLAT-DSVVYLFQLQQIGLAQP- 95

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L D    K      FD+  L               +A    R   + HGL+     
Sbjct: 96  LRAILSDPTIIKAGVAPDFDLRSLGELEPFEPDGFVD--LARMARRRGVHNHGLRGLAAL 153

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           + G+ ISK+ ++++W+  +L+ +Q++YAA+D      + L+  
Sbjct: 154 VCGVRISKSARTTNWANAELTPQQIRYAATDAWIGREIYLRLN 196


>gi|82753264|ref|XP_727606.1| ribonuclease D [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483534|gb|EAA19171.1| Ribonuclease D [Plasmodium yoelii yoelii]
          Length = 510

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
           +LC++QL   D    +  I       P ++  +L ++K  K+ H  + D  +      ++
Sbjct: 180 KLCLIQLCSND-ICFVFNINNLNGEIPLSVKTVLENKKIIKVCHDIKNDQDMFLSK-NIK 237

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           +  VF   + +     Y     L++ +K+ L  ++ K  + S+W   +L++EQ+ YAA+D
Sbjct: 238 INNVFD--LYNYSIDNYIYPPSLQNLVKKYLKKHLDKEYRLSNWLCKNLNEEQIMYAAND 295

Query: 157 VVHLHALRLQFTEK 170
                 + +   ++
Sbjct: 296 SYASREVYISLEKQ 309


>gi|296191265|ref|XP_002743563.1| PREDICTED: probable exonuclease mut-7 homolog [Callithrix jacchus]
          Length = 1009

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 50/207 (24%)

Query: 6   VHEGDIP--AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
             + D+    +   +    + VD E     +     R R  ++Q++       +  +A  
Sbjct: 396 TSQEDLARHKDALLQPQQVVGVDLEWTLVFIAG--GRPRPSLLQVATEGCVFLLDILAFT 453

Query: 60  QKNA--------PNLVGMLVDEKREKIFHYGRFDI-------AVLFY-----TFGV---- 95
           Q  A          +  +L D    K+ +    D+        +L +       GV    
Sbjct: 454 QPPAGQGAQAFSQLVAQLLSDPSITKLGYGMAGDLQKLGMSCPILAHVEKQVLGGVDLLL 513

Query: 96  ---------RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLS 146
                       P         + R    + GL   ++++LG  + K QQ S+W    L 
Sbjct: 514 VHRQMRMAGMPTP--------GMARAGGLR-GLSLLVQQVLGTTLDKTQQLSNWDRRPLF 564

Query: 147 DEQLQYAASDVVHLHALRLQFTEKLQR 173
           +EQL YAA+D   L  +      +  R
Sbjct: 565 EEQLIYAAADAYCLLEVHQALCREPAR 591


>gi|308802033|ref|XP_003078330.1| 3'-5' exonuclease, putative (ISS) [Ostreococcus tauri]
 gi|116056782|emb|CAL53071.1| 3'-5' exonuclease, putative (ISS) [Ostreococcus tauri]
          Length = 1013

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 21/180 (11%)

Query: 13  AECAARYVDAIAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------- 63
           A  +AR    I +D E   G       + ++Q++       +  +A   ++A        
Sbjct: 397 ASTSARAPPCIGLDAEWRPGDNT---PVALLQIATRGEVFLVDLLATAPRSAGEALNDAT 453

Query: 64  -PNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGV---RVRPVFCT-KIA-SRLTRTYT 114
              L  +L  E   K+     +DI  +   +    V   R + +    ++A +      +
Sbjct: 454 DELLQAVLWSEDVYKLGFSFAYDIKRMKASYSHLKVWSERSKNLVDVKQLAFASSPSKMS 513

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            + GL    +++ G  + K +Q SDW    L++ Q+ YAA+D   L  +  +  E +   
Sbjct: 514 LRCGLAVLTRQVTGFTLDKKEQCSDWGKRPLTEGQIAYAAADGHSLCLIFDKCLEMILDE 573


>gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
 gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
 gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
          Length = 897

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 20/170 (11%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-KNAPN------LVGMLVDE 73
            A+AVDTET GL P   RL  V  +  +G    + +AA   +  P       L  +LV  
Sbjct: 327 GAVAVDTETDGLDPLTCRLVGVSFAVDEGRACYVPLAAPDVRPLPADVVREVLSPLLVST 386

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
           +  K+    +FD  VL    GVR   P F T +A+ L  +   ++ L    ++ LG    
Sbjct: 387 EVVKVGQNLKFDYHVLRRW-GVRPEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTI 445

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
                + K           +++  + YAA D      L     E+L+  G
Sbjct: 446 HYKDVVEKGASF---ETVPVAEAGV-YAAEDADIALRLSRVLKERLEAEG 491


>gi|68067898|ref|XP_675876.1| DNA binding protein [Plasmodium berghei strain ANKA]
 gi|56495304|emb|CAH94067.1| DNA binding protein, putative [Plasmodium berghei]
          Length = 392

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           +LC++QL   D    +  I        ++  +L + K  K+ H  + D  +L     + +
Sbjct: 91  KLCLIQLCSND-ICFVFNINDLNGYPLSVKTILENNKIIKVCHDIKNDQDMLLSK-NIEI 148

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
             VF   + +     Y     L++ +K  L  ++ K  + S+W   +L+++Q+ YAA+D 
Sbjct: 149 NNVFD--LYNYSIDNYIYPPSLQNLVKTYLKKHLDKEYRLSNWLCKNLNEKQIIYAANDS 206

Query: 158 VHLHALRLQFTEK 170
                + +   +K
Sbjct: 207 YASREVYIALEKK 219


>gi|242048348|ref|XP_002461920.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor]
 gi|241925297|gb|EER98441.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor]
          Length = 505

 Score = 87.4 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 40/173 (23%)

Query: 36  RDRLCIVQLSP--GDGT---------VDIIRIAAGQKNAPNLVGMLVDEKREKI-FHYGR 83
              + ++Q++   GDG+         VD++ +      AP L  +       K+ F + +
Sbjct: 78  FPTVTLLQVACRFGDGSEGERSEVFVVDLLSVPLADLWAP-LRELFERPDALKLGFRF-K 135

Query: 84  FDI----AVLFYTFGV-----RVRPVFC-TKIASRLTRTYTNQH-----------GLKDN 122
            D+    A      G      RV P    T I       Y   H            L   
Sbjct: 136 QDLVYLSATFSAALGCDSGFDRVEPFLDVTNI-----YYYLKGHDRQKKLPKETKSLATI 190

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +ELL + +SK  Q SDWS   LS+ Q+QYAASD  +L  +   F +K+   G
Sbjct: 191 CEELLSVFLSKELQCSDWSCRPLSEGQIQYAASDAYYLLGIFDLFQKKITMEG 243


>gi|32564304|ref|NP_871964.1| Cell-death-Related Nuclease family member (crn-3) [Caenorhabditis
           elegans]
 gi|26985796|emb|CAD59140.1| C. elegans protein C14A4.4b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 594

 Score = 87.0 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           V   AVD E   +       C++Q+S  D    I            L     + +  K+F
Sbjct: 297 VKEFAVDLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVG-MLNEPFANPRILKVF 355

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKI 105
           H    D+  L   +GV V  +F T +
Sbjct: 356 HGSDSDVLWLQRDYGVHVVNLFDTYV 381


>gi|242000324|ref|XP_002434805.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215498135|gb|EEC07629.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 492

 Score = 87.0 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 39/202 (19%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           VH  D P    AR ++ + V          R RL +VQL+  DG   +  +   +    +
Sbjct: 272 VHMVDTPDGF-ARCIEVLKV----------RGRLSLVQLAVWDGVYVLDILKLSEVLGES 320

Query: 66  LV-----GMLVDEKREKIFHYGRFDIAVLFYTFGV---RVRPVFCTKIASRLTRTYTNQH 117
                   +L  +   K+ +    D+ +L         + R           +     +H
Sbjct: 321 HWRQLYTEILSSDDILKLGYGIVEDLKLLSEVAKCPSAKARNFID---LCSFSEKLRQKH 377

Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                          GL +  + LLG+ ++K +Q SDW    L   Q++YAA D   L  
Sbjct: 378 PSLMKPVIPKDREHKGLSELTRTLLGLPLNKDEQCSDWENRPLRSSQMRYAALDAFCLLQ 437

Query: 163 LRLQFTEKLQRL--GRSDLATS 182
           +  +  ++ +       +L   
Sbjct: 438 VYEELFKRAEGEDMNLRELIQE 459


>gi|330843627|ref|XP_003293751.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum]
 gi|325075888|gb|EGC29725.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum]
          Length = 368

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 23/177 (12%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPG-DGTVDIIRIAAGQK--NAPNLVGMLVDEK 74
           +    I +D E + +  +R  + ++Q+S   + +V +  +           L  +L  + 
Sbjct: 161 KKEKQIGLDIEAVEMG-KRGEMSLIQISTPSNASVYLFDVLTLGDIIFKLGLKEVLESKV 219

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT------RTYTNQHGLKDNL----- 123
             K+ H  R D  +L++ + V +  V+  +IA  +            + G  +       
Sbjct: 220 ILKVVHDCRRDSEILYHKYQVLLTHVYDIQIAHAIILKKIDGNLPIRRFGFNELTHIYTS 279

Query: 124 KELLGINIS---KAQQSSD-----WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           KE     +    K +Q  D     W+   +    L YA  D   L  +    T KLQ
Sbjct: 280 KEYSKYCVDIKFKTKQLFDEDNKIWAKRPIPKLLLDYACLDAAILLPIYRTITPKLQ 336


>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
 gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
          Length = 937

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 65/178 (36%), Gaps = 16/178 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVD 72
                  A DTET GL P    + +   +P +G    + +      A      L  ++ +
Sbjct: 362 LAESKQFAFDTETDGLNPLTASIVVASFAPEEGEAYYLPLPQDFDEACAILQPLDALMRN 421

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            +  K+    +FD  +L         P+F T +A  L      +H L    ++ LG    
Sbjct: 422 SEILKMAQNAKFDQKLLARYGVSSATPLFDTLVAHYLI-APDQRHNLDTLAEQYLGYR-- 478

Query: 133 KAQQSSDWS-------ADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
                SD S         D+++E L  YAA D   +  L     EKL++  +  L   
Sbjct: 479 -TIAYSDLSEKKNFDLRRDVAEELLVDYAAEDADVVRRLYPLLREKLEQEQQEKLFWE 535


>gi|158301896|ref|XP_321572.4| AGAP001549-PA [Anopheles gambiae str. PEST]
 gi|157012692|gb|EAA01810.4| AGAP001549-PA [Anopheles gambiae str. PEST]
          Length = 769

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 21/186 (11%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +  + +  D E +    +R  + ++QL+   G   +IR+    +    L  +L D+   K
Sbjct: 72  QEYNVLGFDCEWVSNQGKRRPVALLQLASHRGLCALIRLCMINRIPQELYDLLNDDNIIK 131

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL-----KDNLKELLGINIS 132
           +      D  VL   + ++V             R    + GL          E+LG+ + 
Sbjct: 132 VGVSPYEDARVLREDYRLKVESTLD-------LRYMAERAGLEPLGIARLANEVLGLTLD 184

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL-------QRLGRSDLATSC 183
           K    + SDW + +LSD Q++YAASD      +  + + KL        R    +     
Sbjct: 185 KHWKVRCSDWESPELSDRQIKYAASDAHVAVEMFKKLSYKLVPHYPWTSRKVVLEQVLEE 244

Query: 184 CNFLMD 189
            +  MD
Sbjct: 245 MDCFMD 250


>gi|255549190|ref|XP_002515649.1| 3-5 exonuclease, putative [Ricinus communis]
 gi|223545192|gb|EEF46701.1| 3-5 exonuclease, putative [Ricinus communis]
          Length = 523

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 34/192 (17%)

Query: 16  AARYVDAIAVDTET--LGLM--PRRDRLCIVQLS----------PGDGTVDIIRIAAGQK 61
           +      I +D E   +          + ++QL+            +  V ++ ++  + 
Sbjct: 28  SLTRSSIIGLDAEWKPVRGHQSTF-PTVALLQLACQLRPQFGSDSAESLVFLLDLSLIRL 86

Query: 62  N--APNLVGMLVDEKREKI-FHYGRFDIAVLFYTF---GVRV-----RPVFC-TKIASRL 109
           +     L  +       K+ F + + D+  L  TF   G         P    T I   L
Sbjct: 87  SSIWKLLKEVFASPDILKLGFRF-KQDLVYLSSTFCSQGCDPGFHKVEPYLDITSIYHFL 145

Query: 110 TRTYTNQH------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
                 +        L     E+LGI++SK  Q SDWS   L++EQ  YAA D   L  +
Sbjct: 146 QHKQRGRKIPKETKSLATICNEVLGISLSKELQCSDWSHRPLTEEQKAYAAIDAHCLLEI 205

Query: 164 RLQFTEKLQRLG 175
              F   + + G
Sbjct: 206 FNVFRANVSKEG 217


>gi|118361377|ref|XP_001013917.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89295684|gb|EAR93672.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1490

 Score = 86.6 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 14/161 (8%)

Query: 23   IAVDTETLGLMPRRDR-----LCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEKR 75
            I  D+E +   PR ++     +  +QL+  +     D I++   ++    +  +  +E  
Sbjct: 1129 IGFDSEFI---PRWNKFEKGGIATLQLATNNKIFIFDTIKLLENEQFLDFVTYLFENENI 1185

Query: 76   EKIFHYGRFDIAVLFYTFG----VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             KI H    DI  +  TF     ++++      I  +      N   LK    ++L   I
Sbjct: 1186 LKIGHSIWQDINEMDKTFKAKKEMKIKSFQDVGIIYKEALNLENVSSLKQMCYQILKQKI 1245

Query: 132  SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            SK +Q SDWS   L   Q+ YAA D +    L  Q    ++
Sbjct: 1246 SKYEQISDWSKRPLRKCQIHYAALDALLPLMLYEQINLMIE 1286



 Score = 77.7 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 20  VDAIAVDTETLGLMPRRDR--LCIVQLSPGD--GTVDIIRIAAGQKNAPNL---VGMLVD 72
              +  D+E      + ++  + I+QL+  +     D + +   + +         +   
Sbjct: 396 SKIVGFDSEFASQWNKFEKGGVSIIQLAVQNKIYIFDALNLLVNKFSQEFFNFCKTLFES 455

Query: 73  EKREKIFHYGRFDI----AVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++  K  H    D+              +       + +R   +  N   LK  +++LL 
Sbjct: 456 KQIIKAGHSISTDLNEMEKTFKSEKKFDLNNFVDIALLNRDIFSLANTASLKFMVQKLLN 515

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           + +SK +Q S+W    L   Q+ YAA D   +  L  +   ++Q+ G
Sbjct: 516 LQMSKFEQISNWDRRPLRKSQIHYAAVDAFIVIKLYEKLV-QIQQAG 561


>gi|46579495|ref|YP_010303.1| 3' exoribonuclease family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602955|ref|YP_967355.1| 3'-5' exonuclease [Desulfovibrio vulgaris DP4]
 gi|46448909|gb|AAS95562.1| 3'- 5' exonuclease domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563184|gb|ABM28928.1| 3'-5' exonuclease [Desulfovibrio vulgaris DP4]
          Length = 202

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 8/168 (4%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQ 60
           +R  E    A    R    +  DTET     R+ ++    +VQL+  D  V +I++    
Sbjct: 33  VRTEEELADALDVLRSDSVLGFDTET-RPTFRKGKVNLPSLVQLACAD-VVYLIQL-NWV 89

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +L D    K     R DI  L   +  R   V      +R        HGL+
Sbjct: 90  PLGEMLADLLSDPAIIKTGVAVRDDIRDLQKLYAFRDGGVVDLGEVAR--DLGLETHGLR 147

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           +     LGI ISK  Q S+WS  +L  +Q+ YAA+D      + +   
Sbjct: 148 NLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATDAWVSREIHISMR 195


>gi|311233310|gb|ADP86164.1| 3'-5' exonuclease [Desulfovibrio vulgaris RCH1]
          Length = 201

 Score = 86.2 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 8/168 (4%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQ 60
           +R  E    A    R    +  DTET     R+ ++    +VQL+  D  V +I++    
Sbjct: 32  VRTEEELADALDVLRSDSVLGFDTET-RPTFRKGKVNLPSLVQLACAD-VVYLIQL-NWV 88

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +L D    K     R DI  L   +  R   V      +R        HGL+
Sbjct: 89  PLGEMLADLLSDPAIIKTGVAVRDDIRDLQKLYAFRDGGVVDLGEVAR--DLGLETHGLR 146

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           +     LGI ISK  Q S+WS  +L  +Q+ YAA+D      + +   
Sbjct: 147 NLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATDAWVSREIHISMR 194


>gi|145345029|ref|XP_001417026.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577252|gb|ABO95319.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 497

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 70/176 (39%), Gaps = 23/176 (13%)

Query: 18  RYVDAIAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA---------PNLV 67
           R    + +D E   G       + ++Q++  +    I  +A   ++A           L 
Sbjct: 97  RTPPCLGLDAEWRPGDNT---PVALLQIATREEVFLIDLLATAPRSAGESLNVATDELLK 153

Query: 68  GMLVDEKREKI-FHYGRFDIAVLFYTFGVRV------RPVFCT-KIA-SRLTRTYTNQHG 118
            +L  E   K+ F +  +D+  +  ++          R +    ++A + +      + G
Sbjct: 154 AVLWSEGVYKLGFSFA-YDVKRMKASYSHLSVWEEKSRNLVDVKQLAYAAMPNKTPLRCG 212

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           L    ++++G  + K +Q SDW    L++ Q+ YAA+D   L  +  +    ++  
Sbjct: 213 LAVLTRQVIGCLLDKKEQCSDWGKRPLTESQMAYAAADGYSLCLIFDKCLTMIEDE 268


>gi|325180763|emb|CCA15173.1| LETM1 and EFhand domaincontaining protein 1 putative [Albugo
           laibachii Nc14]
          Length = 1136

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 72/165 (43%), Gaps = 14/165 (8%)

Query: 3   TIRVHEGDIPAECAA---RYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIR 55
            I V   DI  +  A   + V  + +DTE              + ++Q+S  D TV + R
Sbjct: 129 DINVIHSDIEEDAFASVLQNVKIVGIDTECRPRFDSNKANNP-VSLIQISTID-TVYLYR 186

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTK-IASRLTRTY 113
           I   Q   P L  +L      K+ H  R D   L  +    RV     T  IA RL    
Sbjct: 187 IKRQQPLPPLLGHLLASPHVIKVGHSLRDDCKSLRESKLVERVSSTLDTLPIAKRL---G 243

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            ++ GLK   +  L  N+SK  Q SDW + DLS +Q+QYAA+D  
Sbjct: 244 CSRPGLKTLCQIFLDHNLSKKMQLSDWESPDLSVKQIQYAATDAW 288


>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
 gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
          Length = 920

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 19/190 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREKI 78
           +++DTET  L      L  +  +  +     + + A +K A         +   E   K+
Sbjct: 350 VSIDTETTSLYAMDAELVGLSFAVEERQAFYVPVPADRKEAEKIVNIFKPLYESEAIMKV 409

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS--- 132
               ++D+ VL          +F T IA  L +    +H +    +  L    I+I    
Sbjct: 410 GQNMKYDLEVLRNYGVCLRGALFDTMIAHYLIQPEL-RHNMDYMAEVYLNYQTIHIDTLI 468

Query: 133 --KA-QQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFL 187
             K   Q S     +LS  Q+ +YAA D      L+     KL+ +   +L        +
Sbjct: 469 GAKGKHQKS---MRELSPAQVYEYAAEDADITLQLKNVLEPKLREVEAEELFYQIEMPLV 525

Query: 188 MDRAELDLLG 197
              AE+++ G
Sbjct: 526 PVLAEMEMNG 535


>gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 948

 Score = 85.8 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 22/170 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCI----VQLSPGDGTVDIIRIAAGQKNA----PNLVG 68
                 +A DTET GL    D LC     + L   +     I +    + A      L  
Sbjct: 353 LAGSSVVAFDTETDGL----DALCAGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLKD 408

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++ DE+  K+ H  +FD+ VL         P++ T +A  L       H L +    LL 
Sbjct: 409 LMQDERVLKVAHNAKFDLEVLTRYGLPEAHPLYDTMLAHYLIDA-DQGHSLDELAGGLLR 467

Query: 129 ------INISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171
                  +++  +  +     D+  + L  YA+ D      L     ++L
Sbjct: 468 YDTIRYKDLAPQESFA--LRTDVDPKLLCDYASEDAYVTLRLYHALHKQL 515


>gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
 gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
          Length = 948

 Score = 85.4 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 22/170 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCI----VQLSPGDGTVDIIRIAAGQKNA----PNLVG 68
              +  +A DTET GL    D LC     + L   +     I +    + A      L  
Sbjct: 353 LAGISVVAFDTETDGL----DALCAGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLKD 408

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++ DE+  K+ H  +FD+ VL         P++ T +A  L       H L +    LL 
Sbjct: 409 LMQDERVLKVAHNAKFDLEVLTRYGLPEAHPLYDTMLAHYLIDA-DQGHSLDELAGGLLR 467

Query: 129 ------INISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171
                  +++  +  +     D+  + L  YA+ D      L     ++L
Sbjct: 468 YDTIRYKDLAPQESFA--LRTDVDPKLLCDYASEDAYVTLRLYHALHKQL 515


>gi|194226096|ref|XP_001492084.2| PREDICTED: similar to MUTator family member (mut-7) [Equus
           caballus]
          Length = 870

 Score = 85.4 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 25/174 (14%)

Query: 19  YVDAIAVDTE-TLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKN---APNLVGMLVDE 73
            V  + VD E         R ++ ++Q++       +  +   Q +   +  ++ +L D 
Sbjct: 401 QVGLVGVDLEWRPSFGTGGRPQVSLMQVAVEGHVFLLDLLVLSQTSQAFSQLVLRLLSDP 460

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVR------------------PVFCTKIASRLTRTYTN 115
              K+ +    D+  L  +                         V     A  +  T   
Sbjct: 461 SITKLGYGMAGDLRSLGASCPALAHVEKQLRGSLDLQQVHRQMRVVD-MPAPSVDGTKGP 519

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           + GL   ++++LG  + K QQ S+W    LS+ QL YAA+D   L  +      
Sbjct: 520 R-GLSLLVQQVLGKPLDKRQQLSNWDRRPLSEAQLVYAATDAYCLLEVYRVLCR 572


>gi|157110292|ref|XP_001651037.1| hypothetical protein AaeL_AAEL005527 [Aedes aegypti]
 gi|122068562|sp|Q179T2|MUT7_AEDAE RecName: Full=Probable exonuclease mut-7 homolog; AltName:
           Full=Exonuclease 3'-5' domain-containing protein 3
           homolog
 gi|108878761|gb|EAT42986.1| conserved hypothetical protein [Aedes aegypti]
          Length = 719

 Score = 85.4 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 26/183 (14%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           +   C       IA D+E        + + ++QL+  D  V +I +   Q    +   + 
Sbjct: 450 LSDLC---RQSMIAFDSEWKPTFGGANEVSLIQLATWDD-VYMIDVMVSQLEPLDWAALA 505

Query: 71  VD----EKREKIFHYGRFDIAVLFYT---FGVR-----VRPVFCTKIA----SRLTRTYT 114
            +    +   K+      DI++       F V         +   ++      R      
Sbjct: 506 KNVFNRDDVLKLSFAPSTDISMFQKALPSFNVMYSSQSTSAILDLQLLWRHVERFDSFRF 565

Query: 115 NQH------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             H       L + ++  LG  + K+ Q S+W+   L  EQL+YAA D   L  +     
Sbjct: 566 PYHEESVNQNLANLVRLCLGKKLDKSNQFSNWAQRPLRKEQLRYAALDAFCLLEIYDAIE 625

Query: 169 EKL 171
           ++L
Sbjct: 626 KQL 628


>gi|156555728|ref|XP_001601894.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 929

 Score = 85.4 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 39/193 (20%)

Query: 14  ECAARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---- 68
           + A R V+ + +D+E       R+  L ++Q++  +  V I+ +        +L      
Sbjct: 407 DHALRNVNVVGIDSEWKPSFSIRKPELALIQIAT-ETNVYILDVTTLGNKVQHLWSELGI 465

Query: 69  -MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QH--------- 117
            +  +    K+      DIAV+  +       +            Y +  H         
Sbjct: 466 TLFNNRSILKLGFGIAHDIAVIRESLPAL-SNI------RACGDGYLDLSHLWKKLLKED 518

Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                           L   ++  LG  ++K+ Q S+W    L + Q+ YA+ D   L  
Sbjct: 519 NFVFPFKGDECFTNENLSKLVELCLGQRLNKSDQFSNWERRPLRESQILYASLDAYCLLE 578

Query: 163 LRLQFTEKLQRLG 175
           +      +  RLG
Sbjct: 579 VYNVLAVQCDRLG 591


>gi|296215361|ref|XP_002807292.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 3'-5' domain-containing
           protein 2-like [Callithrix jacchus]
          Length = 621

 Score = 85.0 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 8/159 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
            +    + +D E + L  R   L ++Q++   G   +IR+      G+     L+ +L D
Sbjct: 99  LQDFPVLGIDCEWVNLEGRASPLSLLQMASPSGLCVLIRLPKLICGGKTLPRTLLDILAD 158

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGIN 130
               K+      D + L   +G+ VR     +  +   R    +N   LK   + +L  +
Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMWQRKNLLSNGLSLKSLAETVLNFS 218

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W A+ L+++Q+ YAA D     AL L  
Sbjct: 219 LDKSLVLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257


>gi|302143936|emb|CBI23041.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score = 85.0 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 32/191 (16%)

Query: 16  AARYVDAIAVDTETLGLMPRR---DRLCIVQLS----------PGDGTVDIIRIAAGQKN 62
           +      I +D E   +  ++     + ++QL+               V ++ ++A   +
Sbjct: 22  SLTQSSLIGLDAEWKPIRTQQSSFPTVSLLQLACQLGPRLGPDSAKSLVFLLDLSAISLS 81

Query: 63  A--PNLVGMLVDEKREKI-FHYGRFDIAVLFYTF---GVRV-----RPVFC-TKIASRLT 110
           +    L  + V     K+ F + + D+  L  TF   G         P    T I + L 
Sbjct: 82  SIYELLRDVFVSPDVLKLGFRF-KQDLIYLSSTFCSQGCDPGFDRVEPFLDITSIYNYLQ 140

Query: 111 RTYTNQH------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
                +        L    KELLGI++SK  Q SDWS   L++EQ  YAA+D   L  + 
Sbjct: 141 HKSLGRRIPKETKSLASICKELLGISLSKELQCSDWSHRPLTEEQKTYAATDAHCLLEIF 200

Query: 165 LQFTEKLQRLG 175
             F  K+   G
Sbjct: 201 NIFHFKVAEKG 211


>gi|260805242|ref|XP_002597496.1| hypothetical protein BRAFLDRAFT_156042 [Branchiostoma floridae]
 gi|229282761|gb|EEN53508.1| hypothetical protein BRAFLDRAFT_156042 [Branchiostoma floridae]
          Length = 505

 Score = 85.0 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 13/180 (7%)

Query: 22  AIAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKI 78
            +  D E        R  + ++QL+   G   + R+           +  +L ++   K+
Sbjct: 1   VLGFDCEWVTRGGTTRP-VSLLQLASRTGECGLFRVCRLNDGTIPRCVRDLLANKNVLKV 59

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135
                 D   L   +G+ VR       +A R     + + GL+   +++LG+ + K++  
Sbjct: 60  GVACWEDSRRLERDYGITVRGCVDLRHLAIRHKSLQSGKLGLQALAEQVLGVKMDKSRTV 119

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE-KLQRLGRSD-----LATSCCNFLMD 189
           + S+W A  LS+EQ+ YAA+D +    +   F E KLQ+  +S+        + C  L+D
Sbjct: 120 RCSNWEASKLSEEQITYAANDALVSVDIFTTFLEWKLQQNDKSEKNLRSAVKAMCQGLVD 179


>gi|302697639|ref|XP_003038498.1| hypothetical protein SCHCODRAFT_103723 [Schizophyllum commune H4-8]
 gi|300112195|gb|EFJ03596.1| hypothetical protein SCHCODRAFT_103723 [Schizophyllum commune H4-8]
          Length = 644

 Score = 85.0 bits (210), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 8/141 (5%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           R+ +VQ++ GD  V +++++  Q     L  +L D    K       D   L+   G+ +
Sbjct: 77  RVALVQVADGDHIV-LVQVSQMQLFPEQLRLLLEDPSVAKTGVGISGDAQKLYRDHGISM 135

Query: 98  RPVFCTKIASRLT------RTYTNQHGLKDNLKELLGINISKAQ-QSSDWSADDLSDEQL 150
             V    + +R          Y++  GL   +       + K +   S+W    LSDEQ 
Sbjct: 136 SNVVDLGLMTRSVDNANWKGPYSSPIGLARLIDFYEKRELRKGRISRSNWEKVPLSDEQK 195

Query: 151 QYAASDVVHLHALRLQFTEKL 171
           QYAA+D      L  +    L
Sbjct: 196 QYAANDAHCAWVLYGRLRTLL 216



 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 18/148 (12%)

Query: 46  PGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-T 103
             +  V +I +    +  P+ L  +L +    K        +  L+  +GV    +   +
Sbjct: 323 ADEHWVILIHLERMHEAFPDKLRELLQNTLVVK----AGSSLQ-LYMQYGVPTANIIDLS 377

Query: 104 KIASRLTRTYTNQHGLKDNL----------KELLGINISKAQQSSDWSADDLSDEQLQYA 153
             A  +      +   +D L          +     N     +  DW    L+ E + YA
Sbjct: 378 LFARSVDSNRWKKGSYEDLLTLRELIVAYDEHTFPKNSDGFPKDLDWRL-PLTPELMLYA 436

Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           A+       +  +    L ++ +  LA 
Sbjct: 437 ANSAHGRWHVYTKLATLLSKMVKQPLAA 464


>gi|332261664|ref|XP_003279887.1| PREDICTED: probable exonuclease mut-7 homolog [Nomascus leucogenys]
          Length = 1115

 Score = 85.0 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 40/194 (20%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61
           A    +    + VD E     +     R R  ++Q++       +  +A  Q        
Sbjct: 681 AGALLQRHQVVGVDLEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDILALSQPPTGQGAQ 738

Query: 62  -NAPNLVGMLVDEKREKIFHYGRFDIA---------------------VLFYTFGVRVRP 99
             +  +  +L D    K+ +    D+                      +L     +RV  
Sbjct: 739 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPTLAHVEKQILGSIDLLLVHRQMRVAN 798

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           +     A  + R    + GL   ++++LG  + K QQ S+W    L +EQL YAA+D   
Sbjct: 799 M----PAPGMDRARGLR-GLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQLIYAAADAYC 853

Query: 160 LHALRLQFTEKLQR 173
           L  +      +  R
Sbjct: 854 LLEVHQALCREPAR 867


>gi|289740869|gb|ADD19182.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 568

 Score = 84.7 bits (209), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 11/176 (6%)

Query: 21  DAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
             +  D E  T+    RR  + ++QL    G   + R+   ++   +L  +L DE+  K+
Sbjct: 78  KVLGFDCEWVTVSG-SRRP-VALLQLCSNRGYCALFRLCCIRQIPKSLRDLLADEEVIKV 135

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ-- 136
                +D   L   +GV V   F  +  + +        GL      +L + + K  +  
Sbjct: 136 GVDPGYDAQKLAQDYGVGVASTFDLRYLATMVGRKPE--GLAKLSLSVLKVTLDKHWRLS 193

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            S+W A DL+++Q++YAA+D      +      + +   R     S    +  R E
Sbjct: 194 CSNWEAKDLTEKQIEYAANDAFVAVEIFKILAREFKP--RLSWL-SDFTIIKCRIE 246


>gi|229496277|ref|ZP_04389997.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316855|gb|EEN82768.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 213

 Score = 84.7 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 12/159 (7%)

Query: 17  ARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
                 +  DTE              + ++Q+S  +    +IR+       P L   L +
Sbjct: 42  LERQSVVGFDTESKPCFTRGET--AEVALIQISTLED-AYLIRVNK-TDFTPRLKAFLAN 97

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-HGLKDNLKELLGINI 131
               K+    R D  V+     V+       +    L   Y  +  GL++    + G  I
Sbjct: 98  PNILKVGLSLRDDYKVMRRRAEVQPEGFIELQ---SLCPAYGIRDAGLQNIYAIIFGERI 154

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           SK+Q+ ++W +  LS +Q  YAA D      +     E+
Sbjct: 155 SKSQRVTNWESPTLSFKQQLYAALDAYACLRIYNALMER 193


>gi|117530351|ref|YP_851194.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
 gi|117165963|dbj|BAF36271.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
          Length = 427

 Score = 84.7 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 22/167 (13%)

Query: 26  DTETLG-----LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D ET G     L P      ++Q++     +  +           +  + +D    K+  
Sbjct: 41  DVETWGPQASALDPHTLVARLLQINWPGNAIPYVIDLRALDWPIEIRDIWLDSSVRKVCF 100

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKI-------ASRLTRTYTNQHGLKDNLKELLGINISK 133
             RF+  V   T+GV    ++C  +       A+      T  +     ++++L   ++K
Sbjct: 101 NARFEALVTQATWGVWPDNLYCAMVLFQQIGAATGFKAGRTRGYSYGSLVRDILDTPLNK 160

Query: 134 AQQSSDWSADDLSDEQLQYAASDV---------VHLHALRLQFTEKL 171
              SSDWS  +L+  QLQYAA DV           L         +L
Sbjct: 161 ELASSDWSG-ELTPAQLQYAALDVGAPRNSNYTSLLLEAYALLRNEL 206


>gi|300121240|emb|CBK21621.2| unnamed protein product [Blastocystis hominis]
          Length = 500

 Score = 84.3 bits (208), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 29/179 (16%)

Query: 8   EGDI--PAECAARYVDAIAVDTE------TLGLMPRRDR-LCIVQ--------------L 44
            GD+  P  C+        +DTE         L   R   + ++Q              +
Sbjct: 176 RGDLGVPPSCSLDDTVVEFIDTEEKIMDLIARLKSFRCISVSVIQHSYRSYLGYCSMIMI 235

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104
           S G+    I  IA        L  +  +    K+       +  L   FGV +  +F  +
Sbjct: 236 SSGEIDYAIDAIATHNSCW-KLNDLFTNPSIVKVMFNAGDQLLWLQRDFGVFMVNLFDVQ 294

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA---ASDVVHL 160
           +A +L      Q    D L   +   I+   + +DW    L+   L++A   A   ++L
Sbjct: 295 MALKLLDE--KQTSFSDVLMNRMNEYINMRFRRADWRTRPLTAGMLRFARQTAHSTLYL 351


>gi|302810633|ref|XP_002987007.1| hypothetical protein SELMODRAFT_425875 [Selaginella moellendorffii]
 gi|300145172|gb|EFJ11850.1| hypothetical protein SELMODRAFT_425875 [Selaginella moellendorffii]
          Length = 797

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 27/192 (14%)

Query: 15  CAARYVDAIAVDTE-----TLGLMPRRDRLCIVQLS-------PGDGTVDIIRIA--AGQ 60
            A +    IA+D E       G      R+ ++Q++       P    V I+ +      
Sbjct: 31  LALQESSVIALDAEWKPVSVAGTH---PRVSLLQIACRKRDFGPESDLVFIVDVLSIPAS 87

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDI----AVLFYTFGVRVRPVFCTKIASRLTR----- 111
                L   L   +  K+    R D+    A L  T      P           +     
Sbjct: 88  ALLQPLEEALETSRILKLGFKLRQDLINLAASLSSTASFSCEPYIDIGKLYHEVKRKNPR 147

Query: 112 -TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
               +   L    +++ G  + K+ Q SDW    L++EQ+ YAA+D   L A+       
Sbjct: 148 KLPGDTPSLSHICRDVFGRPLCKSLQCSDWELRPLTEEQISYAAADAHCLLAILDALHPY 207

Query: 171 LQRLGRSDLATS 182
           +  + RS    S
Sbjct: 208 IIDMQRSKAVAS 219


>gi|156093870|ref|XP_001612973.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148801847|gb|EDL43246.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
          Length = 428

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 18/172 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEK 74
           A  ++ I +D E  G    R   + I+Q+   D    D+ +          L  +L D +
Sbjct: 94  AGKINCIGLDVE--GYKIGRNGTVSIIQVCTQDVYLFDLYKCDNSYLFVKCLKELLEDRR 151

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT----NQHGLKDNLKELL--- 127
             KI H  R D ++LF  + + +   F T++A  L    T     Q    D L + L   
Sbjct: 152 VIKITHDCREDCSILFNQYSICLNRTFDTQVAFNLLLKETKKDLYQISYDDLLYKCLLLN 211

Query: 128 ---GINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
               I   K     D   +    ++ E +QYA  DV++L  L     ++L R
Sbjct: 212 NKHKIYFHKMISL-DQKIYLKRPIAKELIQYAIQDVIYLKPLMWSLVDRLLR 262


>gi|317152629|ref|YP_004120677.1| 3'-5' exonuclease [Desulfovibrio aespoeensis Aspo-2]
 gi|316942880|gb|ADU61931.1| 3'-5' exonuclease [Desulfovibrio aespoeensis Aspo-2]
          Length = 203

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 17/155 (10%)

Query: 23  IAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +  DTET      G  P      ++QL+     V + +I         L  +L D++  K
Sbjct: 54  LGFDTETRPVFKKGKRPGPP--SLIQLATAS-CVYVFQINL-LPLCNGLCDLLADKEVIK 109

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFC-TKI--ASRLTRTYTNQHGLKDNLKELLGINISKA 134
                R DI  L    G   +     + I  A+R+       HGL++    LLG  ISK+
Sbjct: 110 TGVAVRDDILGLQKMAGFTPQQFIDLSDITAAARM-----QTHGLRNMAANLLGFRISKS 164

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            Q S+W+ + L+ +Q+ YAA+D      L L    
Sbjct: 165 AQCSNWAKEHLTPQQITYAATDAWISRELYLALAR 199


>gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
 gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
          Length = 938

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 25/218 (11%)

Query: 1   MTTIRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-- 56
           + T+ V+  +  AE  A+    + IA+DTET    P    L  + L+   GT   + +  
Sbjct: 334 LNTVIVNTPETLAELCAKLAQAEWIALDTETTSTDPLNGALVGISLAVEPGTGYYLPVGH 393

Query: 57  AAGQKNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
             G+   P       L   L D ++ K+    ++D+  L    G+  + + F T +A  L
Sbjct: 394 LTGEPQLPLESIRDALAPFLGDPRKPKVGQNLKYDLLAL-RLAGMEAQGLAFDTLLAEWL 452

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQ--------QSSDWSADDLSDEQLQ-YAASDVVHL 160
               +   GLK+  +  LG+ +++ +        Q +      +S  Q+  YAA+D    
Sbjct: 453 VDPASRALGLKEMAERYLGVQMTRIEELIGTGKNQRT---MAQVSVAQVAPYAAADAEIT 509

Query: 161 HALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
             L+    E++ + G + L        +   A+++  G
Sbjct: 510 LRLKPILEERMLKAGVTRLFQDVEMPLVPVLADMEWNG 547


>gi|225455316|ref|XP_002271858.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 510

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 32/191 (16%)

Query: 16  AARYVDAIAVDTETLGLMPRR---DRLCIVQLS----------PGDGTVDIIRIAAGQKN 62
           +      I +D E   +  ++     + ++QL+               V ++ ++A   +
Sbjct: 22  SLTQSSLIGLDAEWKPIRTQQSSFPTVSLLQLACQLGPRLGPDSAKSLVFLLDLSAISLS 81

Query: 63  A--PNLVGMLVDEKREKI-FHYGRFDIAVLFYTF---GVRV-----RPVFC-TKIASRLT 110
           +    L  + V     K+ F + + D+  L  TF   G         P    T I + L 
Sbjct: 82  SIYELLRDVFVSPDVLKLGFRF-KQDLIYLSSTFCSQGCDPGFDRVEPFLDITSIYNYLQ 140

Query: 111 RTYTNQH------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
                +        L    KELLGI++SK  Q SDWS   L++EQ  YAA+D   L  + 
Sbjct: 141 HKSLGRRIPKETKSLASICKELLGISLSKELQCSDWSHRPLTEEQKTYAATDAHCLLEIF 200

Query: 165 LQFTEKLQRLG 175
             F  K+   G
Sbjct: 201 NIFHFKVAEKG 211


>gi|320165604|gb|EFW42503.1| hypothetical protein CAOG_07346 [Capsaspora owczarzaki ATCC 30864]
          Length = 1153

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 64/217 (29%), Gaps = 45/217 (20%)

Query: 2   TTIRVHEGDIPAECAARYVD--AIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIR- 55
            T       +    A  +V    + +DTE   T+          ++QL+  D T+ I   
Sbjct: 672 PTFVTTPEQLNEVSAYLHVPGTVVGMDTEWRPTVMNSKGSSATALLQLATRDRTILIDTC 731

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP---------------- 99
           +  G      +  +  D    KI +    D++ L  +      P                
Sbjct: 732 VLRGAVLGQFVDRLFSDAAVTKIGYAMTGDMSALQMSCTPDPPPSSATGTAGASGSLPAK 791

Query: 100 -------------------VFC----TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
                              +      T  A  + +      GL   ++ +L   + K QQ
Sbjct: 792 IRSARKKEPRGHHFPAIRSLIDLAQLTSHAGVVAQFGVIAPGLAGLVRAVLKKTLDKRQQ 851

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            SDW    L   Q+ YAA D   L  L       ++ 
Sbjct: 852 MSDWERRPLRPAQVHYAALDAFCLLKLHDLMDAAMKA 888


>gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
 gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
          Length = 948

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 59/173 (34%), Gaps = 28/173 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCI----VQLSPGDGTVDIIRIAAGQKNA----PNLVG 68
                 +A DTET GL    D LC     + L   +     I +    + A      L  
Sbjct: 353 LAGSSVVAFDTETDGL----DALCAGIVGMSLCADEKQAYFIPLPESAEEATHILSPLKE 408

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++ DE+  K+ H  +FD+ VL        RP++ T +A  L       H L +    LL 
Sbjct: 409 LMQDERVLKVAHNAKFDLEVLTRYGLPEARPLYDTMLAHYLIDA-DQGHSLDELAGGLLR 467

Query: 129 INISKAQQSSDWSADDL----------SDEQLQYAASDVVHLHALRLQFTEKL 171
            +     +  D S   L                YA+ D      L     ++L
Sbjct: 468 YD---TIRYKDLS--PLEIFALRTDVDPKLLCDYASEDAYVTLRLYQALHKQL 515


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score = 83.9 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 23/191 (12%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-KNAPN------LVGMLVDE 73
             +AVDTET GL P   RL  V L+  +G    + +AA   +  P       L  +L  +
Sbjct: 327 GVVAVDTETDGLDPLTCRLVGVSLAVDEGRACYVPLAAPDVRPLPADVVREVLTPLLASQ 386

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
           K  K+    +FD  VL    GVR   P F T +A+ L  +   ++ L    ++ LG    
Sbjct: 387 KVSKVGQNLKFDYHVLRRW-GVRPEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTI 445

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR--LGRSDLATSC 183
                + K           +++  + YAA D      L     E+L+   LGR       
Sbjct: 446 HYKDVVEKGASF---ETVPVAEAGV-YAAEDADIALRLSRVLKERLEAGDLGRV-FYEME 500

Query: 184 CNFLMDRAELD 194
              L   A ++
Sbjct: 501 MPLLSILARME 511


>gi|311261261|ref|XP_003128683.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like [Sus
           scrofa]
          Length = 640

 Score = 83.1 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 22/166 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
            +    + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 102 LKDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCVLVRLPKLISGGKTLPKTLLDILAD 161

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------GLKDNL 123
               K+      D + L   +G+ V+            R    +H          LK   
Sbjct: 162 GTILKVGVGCSEDASKLLQDYGLVVKGCLD-------LRYLAMRHRNNLLSNGLSLKSLA 214

Query: 124 KELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + +L   + K+   + S+W A++L+++Q+ YAA D     AL L+ 
Sbjct: 215 ETVLNFPLDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLRL 260


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score = 83.1 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 30/202 (14%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR-IAAGQKNAPN----------LVGM 69
             +A DTET  L      L    LS   G    +  I +G   AP           L  +
Sbjct: 349 KIVAFDTETDSLNTHEANLVGFSLSVEKGKGIYVPVILSGGMFAPETISKKDCLAVLEKL 408

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVR---PVFCTKIASRLTRT---YTNQHGLKDNL 123
             +++   + H G+FD+ VL    G+  +    +F T IA+ L        + + L+   
Sbjct: 409 FAEKELTLVMHNGKFDLEVLAAN-GMSAKTECKIFDTMIAAWLLNPAASGKSPYSLEFLA 467

Query: 124 KELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           +  LG+        + K Q  +D     L     +Y A D      L     +++++   
Sbjct: 468 ETKLGLKGIEFKDIVQKNQTFAD---VPLEKA-FKYGAEDSDFTLQLYYLLKDEIKKSNL 523

Query: 177 SDLATS-CCNFLMDRAELDLLG 197
             L        L     +++ G
Sbjct: 524 EKLFYEMEMKVLPILVSMEIQG 545


>gi|325186923|emb|CCA21467.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1069

 Score = 82.7 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 13/160 (8%)

Query: 23   IAVDTET---LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKI 78
            IA+D+E            +  IVQ++  D +     +    K+   +   +L   +  K+
Sbjct: 905  IAIDSEWRPETSRKSMSSKCSIVQIACKDHSFIFDLMTLKMKDMETMFAHLLQSTEIVKL 964

Query: 79   FHYGRFDIAVLFYTFGV-----RVRPVFCTK----IASRLTRTYTNQHGLKDNLKELLGI 129
             +  + D+  L Y+F        +R V        I +          GL D  K  LG 
Sbjct: 965  VYNFQGDLKRLKYSFPEAACFEEIRNVVDLAKPDPILAAENNLARKSRGLSDLAKSSLGF 1024

Query: 130  NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
             + K  Q SDW    LS  Q++YAA D   L  +  +  E
Sbjct: 1025 PLCKRMQRSDWEQRPLSSAQIEYAALDAYVLLMIYERLRE 1064


>gi|195329844|ref|XP_002031620.1| GM26098 [Drosophila sechellia]
 gi|194120563|gb|EDW42606.1| GM26098 [Drosophila sechellia]
          Length = 583

 Score = 82.7 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 8/159 (5%)

Query: 18  RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +    +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L D+  
Sbjct: 75  QTFKVLGFDCEWITVGG-SRRP-VALLQLSSHRGLCALFRLCHMKQIPKDLRELLEDDDV 132

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    + D   L + +GV V      +    +        GL    K  L   + K  
Sbjct: 133 IKVGVAPQEDAMKLSHDYGVGVASTLDLRFLCVMAGHKPE--GLGKLSKTHLNYTLDKHW 190

Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +   S+W A  L  +QL YAA+D +   A+  +    LQ
Sbjct: 191 RLACSNWEAKTLEPKQLDYAANDALMAVAIYQKLCRDLQ 229


>gi|157823431|ref|NP_001102185.1| exonuclease 3'-5' domain-containing protein 2 [Rattus norvegicus]
 gi|149025011|gb|EDL81378.1| exonuclease 3''-5'' domain-like 2 (predicted) [Rattus norvegicus]
 gi|183986019|gb|AAI66432.1| Exdl2 protein [Rattus norvegicus]
          Length = 648

 Score = 82.7 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 14/162 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 126 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCALVRLPRLIYGGKTLPRTLLDILAD 185

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127
               K+      D   L   +G+ VR          L     N        LK   + LL
Sbjct: 186 GTILKVGVGCSEDANKLLQDYGLIVRGCLD---LRYLAMKQGNSVLCNGLSLKSLAETLL 242

Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              + K+   + S+W A++L+++Q+ YAA D     AL L  
Sbjct: 243 NFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALFLHL 284


>gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
          Length = 927

 Score = 82.7 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 18/206 (8%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            E DI A        D I++DTET        +L  +  +  +     + +      A N
Sbjct: 340 TEADIQALVNLLSAADVISLDTETTSTNAIDAQLVGLSFAVEEKKAYYVPVPEQANEAQN 399

Query: 66  ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
                  +  +    K+    ++D+ VL     +   P+F T IA  L +    +H +  
Sbjct: 400 IVDKFKAIYENPNTLKVGQNIKYDLEVLRNYGIMLQGPLFDTMIAHYLLQPEL-RHNMDF 458

Query: 122 NLKELLG---INIS-----KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQ 172
             +  L    ++I      K +   +    +L+  ++  YA  D      L+     KL 
Sbjct: 459 MAEVYLNYETVHIDALIGAKGKTQKN--MRELAPSEVYAYACEDADITLQLKNVLQPKLV 516

Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197
             G   L        +   AE++  G
Sbjct: 517 EAGVERLFNEVEMPLIPVLAEMECNG 542


>gi|21356549|ref|NP_650075.1| CG6744 [Drosophila melanogaster]
 gi|10726453|gb|AAF54639.2| CG6744 [Drosophila melanogaster]
 gi|19528113|gb|AAL90171.1| AT25352p [Drosophila melanogaster]
          Length = 583

 Score = 82.7 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 8/159 (5%)

Query: 18  RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +    +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L D+  
Sbjct: 75  QTFKVLGFDCEWITVGG-SRRP-VALLQLSSHRGLCALFRLCHMKQIPQDLRELLEDDSV 132

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    + D   L + +GV V      +    +        GL    K  L   + K  
Sbjct: 133 IKVGVAPQEDAMKLSHDYGVGVASTLDLRFLCVMAGHKPE--GLGKLSKTHLNYTLDKHW 190

Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +   S+W A  L  +QL YAA+D +   A+  +    LQ
Sbjct: 191 RLACSNWEAKTLEPKQLDYAANDALMAVAIYQKLCRDLQ 229


>gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922]
 gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922]
          Length = 941

 Score = 82.7 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 19/195 (9%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDE 73
           + +D+ A DTET  L P   +L  +  S   G    +       +A N       +  + 
Sbjct: 367 KTLDSFAFDTETTSLDPLEAKLVGISFSWEKGKGYYLPFPEDFDDAKNIILEFAELFSNP 426

Query: 74  KREKIFHYGRFDIAVLFYTFGVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG--- 128
             EKI H  ++D+ VL+   G+R+     F T IA  L      +H L    +  LG   
Sbjct: 427 AIEKIGHNIKYDLKVLYKY-GIRIDGEN-FDTMIAHYLLNP-DMRHNLDVLSETYLGYKP 483

Query: 129 INIS-----KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
           ++I      K +   ++   DL + Q +Y   D      L+  F  +L+++  + L  + 
Sbjct: 484 VSIETLIGKKGKNQKNFREVDLIE-QTEYGTEDSDVTFQLKNIFEPELEKVSLTKLFRNI 542

Query: 183 CCNFLMDRAELDLLG 197
               +   A +++ G
Sbjct: 543 EMPLMKVLATMEIEG 557


>gi|311261263|ref|XP_001925126.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like [Sus
           scrofa]
          Length = 624

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 22/166 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
            +    + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 102 LKDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCVLVRLPKLISGGKTLPKTLLDILAD 161

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------GLKDNL 123
               K+      D + L   +G+ V+            R    +H          LK   
Sbjct: 162 GTILKVGVGCSEDASKLLQDYGLIVKGCLD-------LRYLAMRHRNNLLSNGLSLKSLA 214

Query: 124 KELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + +L   + K+   + S+W A++L+++Q+ YAA D     AL L+ 
Sbjct: 215 ETVLNFPLDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLRL 260


>gi|332228976|ref|XP_003263664.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 1
           [Nomascus leucogenys]
 gi|332228978|ref|XP_003263665.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 2
           [Nomascus leucogenys]
 gi|332228980|ref|XP_003263666.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 3
           [Nomascus leucogenys]
 gi|332228982|ref|XP_003263667.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 4
           [Nomascus leucogenys]
          Length = 621

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 8/159 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 99  LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130
               K+      D + L   +G+ VR     +  +   R     N   LK   + +L   
Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W+A+ L+++Q+ YAA D     AL L  
Sbjct: 219 LDKSLLLRCSNWNAETLTEDQVIYAARDAQISVALFLHL 257


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-------KNAPNLVGML 70
           R+    A+DTET GL PR  +L  + ++   G    I +                L  +L
Sbjct: 314 RHAGRFAIDTETTGLNPRHAKLVGISVATAPGRAAYIPLGHEDGPQLPRPLALERLAPVL 373

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D    KIFH  +FD+ VL         PV  T + S       + HG+ +     L   
Sbjct: 374 ADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELSALHLDHR 433


>gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii]
          Length = 2579

 Score = 82.4 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 89   LFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDL 145
            L    GV V  P+F T IA+++      + G K    ++  LG+ + K  Q+SDWS+  L
Sbjct: 2059 LQSDGGVFVSGPLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHL 2118

Query: 146  SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG-------W 198
            S EQL YAA D   L  L+ +  +KL+     ++       L     ++L G       W
Sbjct: 2119 SQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQIDHARW 2178

Query: 199  ENVDIFSH 206
            + ++  +H
Sbjct: 2179 KELE--AH 2184



 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 8    EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
            + D   E   R   ++ VD ET GL P   R+ ++QL+  D    +  + A   ++P L 
Sbjct: 1863 DDDGSDEREVRL--SMGVDVETTGLDPFSARIRLLQLALPDFPALLFDLFALPVSSPALR 1920

Query: 68   G---MLVDEKREKIFHYGRFDIAVLFYTFGV 95
                +L   +  K+FH G+FD+       G+
Sbjct: 1921 PVRLLLASPRIRKVFHNGQFDL-CFLAAAGL 1950


>gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
          Length = 921

 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 76/209 (36%), Gaps = 22/209 (10%)

Query: 8   EGDIPAECAARYVD-AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP-- 64
           E DI   C        +++DTET  L      L  +  S        + I   Q+ A   
Sbjct: 335 EEDINNLCDLLLTKRIVSLDTETTSLNALEAELVGLSFSVSPQEAFYVPIPNEQQKAQKI 394

Query: 65  --NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
                 +  +E+ EK+    ++DI VL         P+F T IA  L +    +H + D 
Sbjct: 395 VNAFQPLYENEEIEKVGQNIKYDIEVLRNYGITMKGPLFDTMIAHYLLQPEL-RHNMDDM 453

Query: 123 LKELLG---INIS-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171
            +  L    I+I        K Q     +   L+ EQ+  YA  D      L+  F  KL
Sbjct: 454 AETYLRYKTIHIDQLIGAKGKDQL----NMRSLAPEQIVDYACEDADITLQLKNIFEPKL 509

Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLGWE 199
           +  G   L        +   AE++  G +
Sbjct: 510 KEAGLYPLFKEVEMPLIYVLAEMECNGVK 538


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score = 82.4 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-------KNAPNLVGML 70
           R+    A+DTET GL PR  +L  + ++   G    + +                L  +L
Sbjct: 337 RHAGRFAIDTETTGLNPRHAKLVGISVATAPGRAAYVPLGHEDGPQLPRPLALERLAPVL 396

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            D    KIFH  +FD+ VL         PV  T + S       + HG+ +     L   
Sbjct: 397 ADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELSALHLDHR 456


>gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
 gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
          Length = 966

 Score = 82.0 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 66/185 (35%), Gaps = 29/185 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-------------------DGTVDIIRIA 57
           A     +A DTET  L      LC V L+                     +   D+++I 
Sbjct: 374 ATAKGVVAFDTETDALSSATAGLCGVSLAIAPGEACYIPVGHCEKEGLALEAAADLVQIP 433

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                A  L  +L D    K+    ++DIAVL    G++V P+  T + S +     + H
Sbjct: 434 LADVIA-TLKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVSPIEDTMLISYVLEAGLHGH 491

Query: 118 GLKDNLKELLGINISKAQQSSDWSADD-------LSDEQLQYAASDVVHLHALRLQFTEK 170
           G+ +  +  LG      +Q +             LS+    YAA D      L      +
Sbjct: 492 GMDELSELWLGHKPIPFKQVAGTGKAQISFKHVALSEA-TAYAAEDADVTLRLYETLKPR 550

Query: 171 LQRLG 175
           L R G
Sbjct: 551 LAREG 555


>gi|317484427|ref|ZP_07943341.1| 3'-5' exonuclease [Bilophila wadsworthia 3_1_6]
 gi|316924315|gb|EFV45487.1| 3'-5' exonuclease [Bilophila wadsworthia 3_1_6]
          Length = 198

 Score = 82.0 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 10/152 (6%)

Query: 23  IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           +  DTE                ++QL+ G   V +IR+         L G+L D    K 
Sbjct: 52  LGFDTESRPSFKKGKSY--PTSLIQLA-GSELVVLIRLNL-TPFCGALAGLLADPGIIKA 107

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
               R DI  L          +    +A    +      GL+    +L+G  ISKA Q S
Sbjct: 108 GVAIRDDIRALQKLHEFTPGGLAD--LAEMAKQRGIKAQGLRTLAAQLMGCRISKAAQCS 165

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           +W+   L+ +Q++YAA+D      + L   ++
Sbjct: 166 NWAKKTLTPQQIRYAATDAWIGREIYLCMMDQ 197


>gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654]
 gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654]
          Length = 932

 Score = 82.0 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 80/208 (38%), Gaps = 30/208 (14%)

Query: 18  RYVDAIAVDTETLGLMPRRDR---LCI---------V----QLSPGDGTVDIIRIAAGQK 61
           R    +AVDTET  L   +     +C+         +    ++  G+G     ++A GQ 
Sbjct: 342 RDHGYVAVDTETTSLNEMQAEFAGICLAVVPGEACYIPVGHKVGDGEGLFADDKLAEGQL 401

Query: 62  NAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
           +  +    L  +L D    KIF   ++D  +     G+ V P+  T + S    +  + H
Sbjct: 402 SLDDVLAALKPVLEDPAILKIFQNAKYDTKIFSRH-GLNVAPIDDTMLMSYAMFSGLHNH 460

Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           G+    +  LG         +   + +  +    + D  ++YAA D      L   F  +
Sbjct: 461 GMDTLSEHYLGHTPISIKTLLGTGKSAITFDKVKIEDA-VKYAAEDADVTLRLWQLFKPR 519

Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLG 197
           L R   + +  +     +   A++++ G
Sbjct: 520 LHREKVTTVYETLERPLVPVLAQMEMHG 547


>gi|308809972|ref|XP_003082295.1| ankyrin-like protein (ISS) [Ostreococcus tauri]
 gi|116060763|emb|CAL57241.1| ankyrin-like protein (ISS) [Ostreococcus tauri]
          Length = 876

 Score = 82.0 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 54/163 (33%), Gaps = 24/163 (14%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDR-LCIVQLSPGD--GTVDIIRIAAGQKNAP-NLVG 68
               +   +A + D E      R  R L  +Q+SP     T  I  +  G+      L+ 
Sbjct: 581 EVILSASCEAFSFDCE-----WRDPRPLSTLQISPAHTRETFIIDALRVGKDAFSQFLIA 635

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFG--VRVR-----PVFCTKIASRLTRTYTNQHGLKD 121
           +  D    KI      D   +  + G            V   +              L  
Sbjct: 636 VFGDFSVRKIGFAAEQDWRRIRISAGNAALPASYCNANVIDLQ--------GVELVSLAS 687

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
            + + LG  + K  Q S+W A  LS +QL YAA D   L  + 
Sbjct: 688 VVADTLGFALDKRCQRSNWDARPLSQQQLFYAALDAEVLLDIA 730


>gi|242001434|ref|XP_002435360.1| 3-5 exonuclease, putative [Ixodes scapularis]
 gi|215498690|gb|EEC08184.1| 3-5 exonuclease, putative [Ixodes scapularis]
          Length = 587

 Score = 82.0 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 39/201 (19%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------NLVGMLV 71
           R    + +D+E   +   R R+ ++QL+P      ++R+    + A       +L  +L 
Sbjct: 55  REAGVLGLDSEWTTVQGHRHRVALLQLAPNANFSVLLRLCQFTEEASTVTLPESLRDILK 114

Query: 72  DEKREKI-------FHYGRFDIAV-------LFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
           D K  K+        H    D  +       L +  G                  +  + 
Sbjct: 115 DVKIIKVGVGVIDDAHKLFQDYGIDVWGCLDLRHALGCLPE------------LGHFPKV 162

Query: 118 GLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK----- 170
           GL+   + LLG++  K+ +   S+W AD L+++Q++YAA D +    +  Q         
Sbjct: 163 GLRSLSESLLGVSPDKSWRLRCSNWEADVLTEKQIRYAADDALLAVQIFDQMIRNRLTFF 222

Query: 171 LQRLGRSDLATSCCNFLMDRA 191
           L R G  D        +   A
Sbjct: 223 LYRPGWYDKLKEDTIAMCQEA 243


>gi|21397264|gb|AAM51828.1|AC105730_2 Putative nucleolar protein [Oryza sativa Japonica Group]
 gi|22773226|gb|AAN06832.1| Putative nucleolar protein [Oryza sativa Japonica Group]
          Length = 523

 Score = 82.0 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 1/102 (0%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+   +  +       + V+  AVD E       +   C++Q+S       +  +     
Sbjct: 146 TLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIY 205

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
               L     D  + K+ H    DI  L   F + V  +F T
Sbjct: 206 IGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDT 247


>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
 gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
          Length = 925

 Score = 81.6 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 25/207 (12%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63
           + D+      +  +  A DTET G+ P   +  +V +S    +     + + A    A  
Sbjct: 341 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEAAK 396

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
                   L + K  KI    +FDI VL         P+F T IA  L      +HG+  
Sbjct: 397 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 455

Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171
             +  L    ++I      K + Q S     ++  EQ+ +YAA D      L+  F  +L
Sbjct: 456 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADVTLKLKNYFAPEL 512

Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197
           ++ G   L T+     +   AE++  G
Sbjct: 513 KKEGLESLFTTIEMPLIYVLAEMEATG 539


>gi|311246922|ref|XP_003122404.1| PREDICTED: probable exonuclease mut-7 homolog [Sus scrofa]
          Length = 547

 Score = 81.6 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 54/205 (26%)

Query: 12  PAEC----AARYVD--AIAVDTETLGLMP-----RRDRLCIVQLSPGDGTVDIIRIA--- 57
           PA C    AAR      ++VD E     P      R +  ++Q++  +G V ++ +    
Sbjct: 211 PALCCTLTAARLQPGQVVSVDLE---WRPSFGVGGRPQASLMQVAV-EGRVFLLDLPQLL 266

Query: 58  ------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111
                   Q  +  +  +L D    K+ +    D+  L  +     +       A +  R
Sbjct: 267 SPARGQEPQAFSQLVSRLLADPSITKLGYGMAGDLRSLGASCPALAQ-------AQKQLR 319

Query: 112 TYTNQH-----------------------GLKDNLKELLGINISKAQQSSDWSADDLSDE 148
              +                         GL   ++++LG  + K QQ S+W    L +E
Sbjct: 320 GSLDLLQVHKQLRVVDAPAPGVDGAAGPRGLSLLVQQVLGKPLDKTQQLSNWDRRPLGEE 379

Query: 149 QLQYAASDVVHLHALRLQFTEKLQR 173
           QL YAA+D   L  +      +  R
Sbjct: 380 QLVYAAADAYCLLEVYWALCREPAR 404


>gi|195500059|ref|XP_002097212.1| GE24622 [Drosophila yakuba]
 gi|194183313|gb|EDW96924.1| GE24622 [Drosophila yakuba]
          Length = 583

 Score = 81.6 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 18  RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +    +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L D+  
Sbjct: 75  QTFKVLGFDCEWITVGG-SRRP-VALLQLSSHRGLCALFRLCHMKQIPKDLRDLLEDDAV 132

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    + D   L + +GV V      +    +        GL    K  L   + K  
Sbjct: 133 IKVGVAPQEDAIKLSHDYGVGVASTLDLRFLCVMAGHKPE--GLGKLSKTHLNYTLDKHW 190

Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +   S+W A +L  +QL YAA+D +   A+  +    LQ
Sbjct: 191 RLACSNWEAKNLEPKQLDYAANDALMAVAIYQKLCRDLQ 229


>gi|190689663|gb|ACE86606.1| exonuclease 3'-5' domain-like 2 protein [synthetic construct]
 gi|190691025|gb|ACE87287.1| exonuclease 3'-5' domain-like 2 protein [synthetic construct]
          Length = 621

 Score = 81.6 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 99  LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130
               K+      D + L   +G+ VR     +  +   R     N   LK   + +L   
Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W A+ L+++Q+ YAA D     AL L  
Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257


>gi|301129155|ref|NP_001180289.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo
           sapiens]
 gi|301129157|ref|NP_001180290.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo
           sapiens]
 gi|301129159|ref|NP_001180291.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo
           sapiens]
 gi|301129161|ref|NP_001180292.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo
           sapiens]
 gi|119601391|gb|EAW80985.1| exonuclease 3'-5' domain-like 2, isoform CRA_b [Homo sapiens]
          Length = 621

 Score = 81.6 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 99  LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130
               K+      D + L   +G+ VR     +  +   R     N   LK   + +L   
Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W A+ L+++Q+ YAA D     AL L  
Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257


>gi|149737203|ref|XP_001500310.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 1
           [Equus caballus]
          Length = 625

 Score = 81.6 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 103 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCVLVRLPKLVCGGKTLPKTLLDILAD 162

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130
           +   K+      D + L   +G+ V+     +  +   R     N   LK   + +L   
Sbjct: 163 DTILKVGVGCSEDASKLLQDYGLVVKGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 222

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W A++L+++Q+ YAA D     AL L  
Sbjct: 223 LDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLHL 261


>gi|194380670|dbj|BAG58488.1| unnamed protein product [Homo sapiens]
          Length = 621

 Score = 81.6 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 99  LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130
               K+      D + L   +G+ VR     +  +   R     N   LK   + +L   
Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W A+ L+++Q+ YAA D     AL L  
Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257


>gi|328776161|ref|XP_391887.3| PREDICTED: probable exonuclease mut-7 homolog [Apis mellifera]
          Length = 954

 Score = 81.6 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 41/188 (21%)

Query: 17  ARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---- 68
              V  + +D+E          ++  L ++Q++  D  V II +         L      
Sbjct: 410 LDGVSIVGIDSEWKPCF---GTKQTELALIQIATKD-NVYIIDVTTMGNKFTELWAKLAL 465

Query: 69  -MLVDEKREKIFHYGRFDIAVLFYTFGVRVR------------PVFCTKIASRLTRTY-- 113
            +  ++   K+      D+ V+  +     +             ++      +L   Y  
Sbjct: 466 VLFENKNILKLGFGIAQDMTVIRSSLPALSKIKIYGQGYLDIVNLW-----KKLVEDYKF 520

Query: 114 ---------TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
                      +  L   ++  LG  ++K+ Q S+W    L + Q+ YAA D   L  + 
Sbjct: 521 VFPHESDDQFTKKNLSKLVELCLGQKLNKSDQFSNWEQRPLRESQIIYAALDAYCLLEIY 580

Query: 165 LQFTEKLQ 172
                + +
Sbjct: 581 ATLEIQCE 588


>gi|237681098|ref|NP_598559.2| exonuclease 3'-5' domain-containing protein 2 [Mus musculus]
          Length = 650

 Score = 81.6 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 14/162 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 128 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCALVRLPRLIYGGRTLPRTLLDILAD 187

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127
               K+      D   L   +G+ VR          L     N        LK   + +L
Sbjct: 188 GAILKVGVGCSEDANKLLQDYGLIVRGCLD---LRYLAMKQGNNILCNGLSLKSLAETIL 244

Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              + K+   + S+W A++L+++Q+ YAA D     AL L  
Sbjct: 245 NFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALFLHL 286


>gi|148670716|gb|EDL02663.1| exonuclease 3''-5'' domain-like 2, isoform CRA_a [Mus musculus]
          Length = 652

 Score = 81.6 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 14/162 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 130 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCALVRLPRLIYGGRTLPRTLLDILAD 189

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127
               K+      D   L   +G+ VR          L     N        LK   + +L
Sbjct: 190 GAILKVGVGCSEDANKLLQDYGLIVRGCLD---LRYLAMKQGNNILCNGLSLKSLAETIL 246

Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              + K+   + S+W A++L+++Q+ YAA D     AL L  
Sbjct: 247 NFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALFLHL 288


>gi|114653639|ref|XP_510030.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 8
           [Pan troglodytes]
 gi|114653641|ref|XP_001141629.1| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]
 gi|332842572|ref|XP_001141128.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 2
           [Pan troglodytes]
 gi|332842574|ref|XP_003314457.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 [Pan
           troglodytes]
          Length = 621

 Score = 81.2 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 99  LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130
               K+      D + L   +G+ VR     +  +   R     N   LK   + +L   
Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W A+ L+++Q+ YAA D     AL L  
Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257


>gi|74147230|dbj|BAE27515.1| unnamed protein product [Mus musculus]
          Length = 650

 Score = 81.2 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 14/162 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 128 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCALVRLPRLIYGGRTLPRTLLDILAD 187

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127
               K+      D   L   +G+ VR          L     N        LK   + +L
Sbjct: 188 GAILKVGVGCSEDANKLLQDYGLIVRGCLD---LRYLAMKQGNNILCNGLSLKSLAETIL 244

Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              + K+   + S+W A++L+++Q+ YAA D     AL L  
Sbjct: 245 NFPLDKSLLLRCSNWDAENLTEDQVTYAARDAQISVALFLHL 286


>gi|289739467|gb|ADD18481.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 349

 Score = 81.2 bits (200), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 15/206 (7%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            T+R H GD            +  D E + +   R  + ++QL+  +G   + R+     
Sbjct: 40  NTLRQHCGD---------YKVLGFDCEWITIGRVRKPVALLQLASPNGFCGLFRLCHMDH 90

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
              +L  +L D++  K+      D   L   +G+ V   F  +  + + R      GL+ 
Sbjct: 91  IPESLKNLLADKEIIKVGVNPAEDARKLQGDYGIYVASTFDIRYLAAMIRC--KPLGLEK 148

Query: 122 NLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             + LL ++  K      S+W  D L D+Q++YAA+D      +      +L+     + 
Sbjct: 149 LSRSLLNVDFVKPWYIARSNWEFDKLDDDQVEYAANDAFAGVEIFKHLANRLKPRNYRNF 208

Query: 180 ATSCCNFLMDRAE--LDLLGWENVDI 203
             +    +  + E  LDL   EN+ I
Sbjct: 209 TNTDFIAIKSKIEYLLDLDFSENIPI 234


>gi|297695392|ref|XP_002824927.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           isoform 1 [Pongo abelii]
 gi|297695394|ref|XP_002824928.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           isoform 2 [Pongo abelii]
 gi|297695396|ref|XP_002824929.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           isoform 3 [Pongo abelii]
          Length = 621

 Score = 81.2 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 99  LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130
               K+      D + L   +G+ VR     +  +   R     N   LK   + +L   
Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W A+ L+++Q+ YAA D     AL L  
Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257


>gi|218885986|ref|YP_002435307.1| 3'-5' exonuclease [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756940|gb|ACL07839.1| 3'-5' exonuclease [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 201

 Score = 81.2 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 8/169 (4%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQ 60
           IR  E    A    R  D +  DTET     R+ ++    +VQL+  D  V + ++    
Sbjct: 32  IRSEEELADAVDRLRDEDVLGFDTET-RPTFRKGKVNLPSLVQLACSD-VVYLFQL-NWL 88

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +L D    K     R DI  L   F      V      +R        HGL+
Sbjct: 89  PFGEALATVLSDADIVKTGVAVRDDIRDLQKLFAFNDAGVVDLGEVAR--DLGLETHGLR 146

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           +     L + ISK  Q S+WS  +L+ +Q+ YAA+D      + L+   
Sbjct: 147 NLAANFLEVRISKGAQCSNWSNRELAPQQVLYAATDAWVSREIHLRMRR 195


>gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
 gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
          Length = 944

 Score = 81.2 bits (200), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 72/207 (34%), Gaps = 15/207 (7%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN- 62
           I   EG      + +    IAVDTET  L      L  + +S        I +A    N 
Sbjct: 354 ITTEEGLKALINSLQDAPRIAVDTETTSLNTFEAELAGISISTEARKARFIALANSSLNP 413

Query: 63  ---APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHG 118
                 L  +L + +  K     ++DI VL    G+ + PV F T +AS +      +H 
Sbjct: 414 QSALELLRPLLENPELPKTGQNLKYDILVLKKY-GIDLTPVGFDTMLASYVLDPE-EKHN 471

Query: 119 LKDNLKELLGINISKAQQSSDWSADDL-----SDEQL-QYAASDVVHLHALRLQFTEKLQ 172
           L D     LG   +  ++ +      L       EQL  YA  D      L   F +KL+
Sbjct: 472 LDDLAARHLGYKTTTFEELTGTGKAKLHIFDVEPEQLSDYACQDADLALQLEEIFRKKLE 531

Query: 173 RLGRSDLATS--CCNFLMDRAELDLLG 197
                           +   A ++  G
Sbjct: 532 GEKELLWLCEHIEFPLVSVLAAMEHAG 558


>gi|299473129|emb|CBN78705.1| Similarity to ribonuclease D (RNase D) [Ectocarpus siliculosus]
          Length = 1260

 Score = 81.2 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 61/203 (30%), Gaps = 51/203 (25%)

Query: 19  YVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRI------------------ 56
              A+AVD E     +   P    +C++QL+ G+ T  +  +                  
Sbjct: 667 QQPALAVDCEWRPARVAGTPANP-VCLLQLAAGERTFVVDMLHVCRPKSAAAATDAVEET 725

Query: 57  -----AAGQKNAPNLVGMLVDEKREKIFHYGRFD----------IAVLFYTFGVR----- 96
                         L  +L      K+    + D          +       GV      
Sbjct: 726 ASGLTKREALLEEALGAVLGSPGVVKVGLGPKADFQSLIRSYPHMPCFRRVCGVVNLCHV 785

Query: 97  VRPVFCTKIASRLTRTYTN-QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155
                    AS L     + +  L      +LG  + K++Q SDW    LS  Q +YAA 
Sbjct: 786 ASN------ASSLRGKPADEKASLSRLCNVVLGKPLDKSEQCSDWGNRPLSGRQKRYAAL 839

Query: 156 DVVHLHALRLQFTEKLQRLGRSD 178
           D      +  +   ++    R +
Sbjct: 840 DARATLLVHRELAPEVPPE-RME 861


>gi|109084062|ref|XP_001108714.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 1
           [Macaca mulatta]
 gi|297298135|ref|XP_001108864.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 2
           [Macaca mulatta]
          Length = 620

 Score = 81.2 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   +IR+      G+     L+ +L D
Sbjct: 99  LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLIRLPKLICGGKTLPRTLLNILAD 158

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130
               K+      D + L   +G+ VR     +  +   R     N   LK   + +L   
Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W A+ L+++Q+ YAA D     AL L  
Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257


>gi|94987515|ref|YP_595448.1| ribonuclease D [Lawsonia intracellularis PHE/MN1-00]
 gi|94731764|emb|CAJ55127.1| Ribonuclease D [Lawsonia intracellularis PHE/MN1-00]
          Length = 198

 Score = 81.2 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 62/169 (36%), Gaps = 11/169 (6%)

Query: 7   HEGDI-PAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            E ++  A    +    +  DTE                +VQL+     V +IR++    
Sbjct: 34  TENELRDALDLLKDETVLGFDTEARPSFKKGKSY--PTALVQLASSQH-VILIRLSK-VP 89

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               LV +L   K  K       DI +L          +    IA    R      GL+ 
Sbjct: 90  LGELLVNILSCAKIIKAGVAIHEDIRLLQKLHPFEAEGIID--IAEMARRLQLKAQGLRT 147

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
               +LG  +SKA Q S+W   +LS +Q+ YAA+D      L  +  E 
Sbjct: 148 LAANILGCRVSKAVQCSNWEKKELSPQQVLYAATDAWVGRELYFKLLEM 196


>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
 gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
          Length = 921

 Score = 80.8 bits (199), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 25/207 (12%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63
           + D+      +  +  A DTET G+ P   +  +V +S    +     + + A    A  
Sbjct: 337 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEAAK 392

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
                   L + K  KI    +FDI VL         P+F T IA  L      +HG+  
Sbjct: 393 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 451

Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171
             +  L    ++I      K + Q S     ++  EQ+ +YAA D      L+  F  +L
Sbjct: 452 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADITLKLKNYFAPEL 508

Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197
           ++ G   L T+     +   AE++  G
Sbjct: 509 KKEGLESLFTTIEMPLIYVLAEMEATG 535


>gi|326671072|ref|XP_003199355.1| PREDICTED: probable exonuclease mut-7 homolog [Danio rerio]
          Length = 847

 Score = 80.8 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 27/192 (14%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTE-TLGLMP-RRDRLCIVQLSPGDGTVDII----RIAA 58
            + E D   E   +    + +D E   G       R+ ++QL+  D    +      I+ 
Sbjct: 445 TLEEVDKCREAVLKSGSVVGMDMEWRAGFGTVSSQRVALIQLAVQDQVFLLDLCAHAISH 504

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVL------FYTFGVRVRPVFCT----KIASR 108
                  +  +L D+K  K+ +    D+  L           +++  V       +   R
Sbjct: 505 HSTTVDFIRALLSDKKILKLGYGMSGDLRSLVSTWPDLREEPMKMEGVLDLLLIHQELQR 564

Query: 109 L-----------TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
                             + GL   ++++LG  ++K++Q S+W    L   QL+YAA+D 
Sbjct: 565 CWLGNKGCRSVEVSEGPAEKGLSLLVQQVLGKPLNKSEQLSNWERRPLRTSQLRYAAADA 624

Query: 158 VHLHALRLQFTE 169
             L  + L  + 
Sbjct: 625 YCLLDIYLILSR 636


>gi|302807740|ref|XP_002985564.1| hypothetical protein SELMODRAFT_122415 [Selaginella moellendorffii]
 gi|300146770|gb|EFJ13438.1| hypothetical protein SELMODRAFT_122415 [Selaginella moellendorffii]
          Length = 442

 Score = 80.8 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 27/187 (14%)

Query: 15  CAARYVDAIAVDTE-----TLGLMPRRDRLCIVQLS-------PGDGTVDIIRIA--AGQ 60
            A +    IA+D E       G+     R+ ++Q++       P    V I+ +      
Sbjct: 31  LALQESSVIALDAEWKPVLVAGMH---PRVSLLQIACRKRDFGPESDLVFIVDVLSIPAS 87

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDI----AVLFYTFGVRVRPVFCTKIASRLTR----- 111
                L   L   +  K+    R D+    A L  T      P           +     
Sbjct: 88  ALLQPLEEALETSRILKLGFKLRQDLINLAASLSSTASFSCEPYIDIGKLYHEVKRKNPR 147

Query: 112 -TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
               +   L    +++ G  + K+ Q SDW    L++EQ+ YAA+D   L A+       
Sbjct: 148 KLPGDTPSLSHICRDVFGRPLCKSLQCSDWELRPLTEEQISYAAADAHCLLAILDALHPY 207

Query: 171 LQRLGRS 177
           +  + RS
Sbjct: 208 IIDMQRS 214


>gi|298373694|ref|ZP_06983683.1| 3'-5' exonuclease domain protein [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274746|gb|EFI16298.1| 3'-5' exonuclease domain protein [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 194

 Score = 80.8 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 12/162 (7%)

Query: 13  AECAARYVDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A       + +  DTET         +++ ++Q+S       + R+    K+   L   L
Sbjct: 36  AVDCLMQEEVVGFDTETKPSFTHGKSNKIALMQISTAKKCF-LFRLQMIGKS-EALKNFL 93

Query: 71  VDEKREKI---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +EK +KI    H    D+  L        +     +    + +    + GL+     + 
Sbjct: 94  ENEKIKKIGLALHG---DLRNLRVWDKFTPKNFIDLQ--KIVIQYGIEELGLQRIYAIIF 148

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           G  ISK+QQ S+W A  L+  Q  YAA+D      + L+  E
Sbjct: 149 GKKISKSQQLSNWEAKILNQAQQIYAATDAWACREIYLKLIE 190


>gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
          Length = 994

 Score = 80.4 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 30/196 (15%)

Query: 8   EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---- 62
           E D+    A A+    +AVDTET  L      L  + L+ G G    I +  G       
Sbjct: 392 EADLEEWIARAQAAGLVAVDTETSALDAVGADLVGISLATGPGAACYIPLGHGNTTDMFA 451

Query: 63  -----------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111
                         L  +L D+   K+    ++D+ VL    G+ V P+  T + S    
Sbjct: 452 ERPRQIDKARALALLKPLLEDDSVLKVGQNIKYDLTVLARH-GIAVAPIDDTMVMSFCLD 510

Query: 112 TYTN-----QHGLKDNLKELLGINISK-------AQQSSDWSADDLSDEQLQYAASDVVH 159
                     HG+ +  +  LG    K        +++  ++   L D   +YAA D   
Sbjct: 511 AGRGEPMPFGHGMDELAERHLGHTTIKFKDVAGTGKKAISFAEVPLPDA-TRYAAEDAEV 569

Query: 160 LHALRLQFTEKLQRLG 175
              L      +L   G
Sbjct: 570 TWRLHAVLAPRLAEEG 585


>gi|195055346|ref|XP_001994580.1| GH15379 [Drosophila grimshawi]
 gi|193892343|gb|EDV91209.1| GH15379 [Drosophila grimshawi]
          Length = 591

 Score = 80.4 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 8/166 (4%)

Query: 18  RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           R+   +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L DE  
Sbjct: 74  RHFKVLGFDCEWITVGG-SRRP-VALLQLSSHQGLCALFRLCCMKQIPKDLRDLLEDEDL 131

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    + D   L + FGV V   F  +  + +        GL    K  L   + K+ 
Sbjct: 132 IKVGVAPQDDAMKLSHDFGVGVASTFDLRYMAVMAGHPAE--GLGKLSKTHLDFQLDKSW 189

Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           +   S+W A  L+  QL YAA D +   A+  + +  LQR    D 
Sbjct: 190 RLACSNWEAPQLTAAQLNYAAYDALAAVAIFKKLSYDLQRQQFWDW 235


>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
 gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
          Length = 921

 Score = 80.4 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 25/207 (12%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63
           + D+      +  +  A DTET G+ P   +  +V +S    +     + + A    A  
Sbjct: 337 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEAAK 392

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
                   L + K  KI    +FDI VL         P+F T IA  L      +HG+  
Sbjct: 393 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 451

Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171
             +  L    ++I      K + Q S     ++  EQ+ +YAA D      L+  F  +L
Sbjct: 452 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADVTLKLKNYFAPEL 508

Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197
           ++ G   L T+     +    E++  G
Sbjct: 509 KKEGLESLFTTIEMPLIYVLVEMEATG 535


>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
          Length = 921

 Score = 80.4 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 25/207 (12%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63
           + D+      +  +  A DTET G+ P   +  +V +S    +     + + A    A  
Sbjct: 337 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEAAK 392

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
                   L + K  KI    +FDI VL         P+F T IA  L      +HG+  
Sbjct: 393 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 451

Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171
             +  L    ++I      K + Q S     ++  EQ+ +YAA D      L+  F  +L
Sbjct: 452 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADVTLKLKNYFAPEL 508

Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197
           ++ G   L T+     +    E++  G
Sbjct: 509 KKEGLESLFTTIEMPLIYVLVEMEATG 535


>gi|221052342|ref|XP_002257747.1| dna binding protein [Plasmodium knowlesi strain H]
 gi|193807578|emb|CAQ38083.1| dna binding protein, putative [Plasmodium knowlesi strain H]
          Length = 470

 Score = 80.4 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           LC++QLS       +  I   +   P  +  ++ DEK +K+ H  R D   +F    +++
Sbjct: 148 LCLIQLSS-KNLCFVFNINKLKGKIPMCVKEIMEDEKIKKVCHDIRND-KDMFEDQDIQI 205

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           R  F   +     + Y     L+  +K  L  N+ K  + S+W + DL +EQ+ YAA+D 
Sbjct: 206 RNTFD--LYDFCMKNYLYPPSLQFLVKLFLKKNLEKHFRLSNWLSHDLKEEQILYAAADA 263

Query: 158 VHLHALRLQFTEK 170
                + +   E 
Sbjct: 264 YASREVYMVLKEM 276


>gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 927

 Score = 80.4 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 22/208 (10%)

Query: 7   HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
            E D+ A        D I++DTET        +L  +  +  +     + +      A N
Sbjct: 340 TEADMQALVTLLSTADVISLDTETTSTNAIEAQLVGLSFAIEEKKAYYVPVPEQADEAQN 399

Query: 66  ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
                  +  + K  K+    ++D+ VL         P+F T +A  L +    +H +  
Sbjct: 400 IVNRFKAIYENPKTLKVGQNIKYDLEVLRNYGIALQGPLFDTMVAHYLLQPEL-RHNMDF 458

Query: 122 NLKELLG---INIS-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170
             +  L    ++I        KAQ+    +  +L+  ++  YA  D      L+     K
Sbjct: 459 MAEVYLNYETVHIDALIGPKGKAQK----NMRELAPSEVYNYACEDADITLQLKNVLQPK 514

Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLG 197
           L   G   L        +   AE++  G
Sbjct: 515 LVEAGVERLFNEVEMPLIPVLAEMECNG 542


>gi|50949608|emb|CAH10568.1| hypothetical protein [Homo sapiens]
          Length = 272

 Score = 80.4 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 99  LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 158

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130
               K+      D + L   +G+ VR     +  +   R     N   LK   + +L   
Sbjct: 159 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 218

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W A+ L+++Q+ YAA D     AL L  
Sbjct: 219 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 257


>gi|83285930|ref|XP_729939.1| 3'-5' exonuclease [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489160|gb|EAA21504.1| 3'-5' exonuclease, putative [Plasmodium yoelii yoelii]
          Length = 284

 Score = 80.4 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 21/149 (14%)

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-----RTYTNQHGLKD 121
             ++ ++K  K+ H  R D + L+    ++   V+ T  A  L           Q    +
Sbjct: 32  KKIIENKKTLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLLLEKKKENDIYQISFLN 91

Query: 122 NLKELLGINIS-----KAQQSSD---WSADDLSDEQLQYAASDVVHLHALR---LQFTEK 170
            L + LG+        K +   +   W    LS   + YA  +V +L  +     +   K
Sbjct: 92  LLHDYLGVKDDCLNNIKKEMYKNEKIWEIRPLSKISIIYALKNVKYLLPIYKIFDKLVSK 151

Query: 171 LQRLGRS-DLATSCCNFLMDRAEL--DLL 196
            + L +S D    C   L  R +L  DL 
Sbjct: 152 KEVLEKSKDFVNYCF--LNSRYKLPVDLA 178


>gi|297808445|ref|XP_002872106.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317943|gb|EFH48365.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 508

 Score = 80.4 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 31/181 (17%)

Query: 23  IAVDTET---LGLMPRRDRLCIVQLS-------PGDGTVDIIRIAAGQKNAPNLVGML-- 70
           IA+D E             + ++Q++         D   D+  I     + P++  +L  
Sbjct: 31  IALDAEWKPQHSNTSSFPTVTLLQVACRLSYATDDDEVSDVFLIDLTSIHLPSVWELLNE 90

Query: 71  --VDEKREKI-FHYGRFDIAVLFYTF---GVR-----------VRPVFCTKIASRLTRTY 113
             V     K+ F + + D+  L  TF   G             +  ++      R  R  
Sbjct: 91  MFVSPDVLKLGFRF-KQDLVYLSSTFTQHGCEGGFQEVKQYLDITSIYNYLQHKRFGRKA 149

Query: 114 TNQH-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                 L    KE+L I++SK  Q SDWS   L++EQ  YAA+D   L  +   F   L 
Sbjct: 150 PKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFKAHLV 209

Query: 173 R 173
            
Sbjct: 210 E 210


>gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 704

 Score = 80.4 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%)

Query: 89  LFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDL 145
           L    GV V  P+F T IA+++      + G K    ++  LG+ + K  Q+SDWS+  L
Sbjct: 184 LQSDGGVFVSGPLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHL 243

Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           S EQL YAA D   L  L+ +  +KL+     ++       L     ++L G
Sbjct: 244 SQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNG 295



 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKIFH 80
           VD ET GL P   R+ ++QL+  D    +  + A   ++P L     +L   +  K+FH
Sbjct: 2  GVDVETTGLDPFSARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLASPRIRKVFH 61

Query: 81 YGRFDIAVLFYTFGV 95
           G+FD+       G+
Sbjct: 62 NGQFDL-CFLAAAGL 75


>gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 704

 Score = 80.4 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%)

Query: 89  LFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDL 145
           L    GV V  P+F T IA+++      + G K    ++  LG+ + K  Q+SDWS+  L
Sbjct: 184 LQSDGGVFVSGPLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHL 243

Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           S EQL YAA D   L  L+ +  +KL+     ++       L     ++L G
Sbjct: 244 SQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNG 295



 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKIFH 80
           VD ET GL P   R+ ++QL+  D    +  + A   ++P L     +L   +  K+FH
Sbjct: 2  GVDVETTGLDPFSARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLASPRIRKVFH 61

Query: 81 YGRFDIAVLFYTFGV 95
           G+FD+       G+
Sbjct: 62 NGQFDL-CFLAAAGL 75


>gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 704

 Score = 80.4 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%)

Query: 89  LFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDL 145
           L    GV V  P+F T IA+++      + G K    ++  LG+ + K  Q+SDWS+  L
Sbjct: 184 LQSDGGVFVSGPLFDTLIAAKVVEAGVMRTGFKLLQVVERFLGVLMDKRMQASDWSSPHL 243

Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           S EQL YAA D   L  L+ +  +KL+     ++       L     ++L G
Sbjct: 244 SQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNG 295



 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 24 AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKIFH 80
           VD ET GL P   R+ ++QL+  D    +  + A   ++P L     +L   +  K+FH
Sbjct: 2  GVDVETTGLDPFSARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLASPRIRKVFH 61

Query: 81 YGRFDIAVLFYTFGV 95
           G+FD+       G+
Sbjct: 62 NGQFDL-CFLAAAGL 75


>gi|72093228|ref|XP_791289.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115974338|ref|XP_001181064.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 943

 Score = 80.4 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 29/167 (17%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPN--- 65
           A+  ++    + +D E             ++ + Q++  +    +   A       +   
Sbjct: 415 ADITSKQNPMVGIDME--WRPSFSPTQKSKVALCQIATHETAYLLDMTALWVSETKDIVK 472

Query: 66  --LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
                +L  E+  K+      DI           RP            +    HGL D +
Sbjct: 473 DFFQQLLQSEEILKLGEEA--DI------LKEIPRP----------GNSRIGSHGLTDLV 514

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
               G  + K  + SDW    L   Q+ YAA D   L  +     EK
Sbjct: 515 HYCFGKYLDKRDRISDWERRPLRQAQMIYAALDAFCLLEVYAYLKEK 561


>gi|323700422|ref|ZP_08112334.1| 3'-5' exonuclease [Desulfovibrio sp. ND132]
 gi|323460354|gb|EGB16219.1| 3'-5' exonuclease [Desulfovibrio desulfuricans ND132]
          Length = 204

 Score = 80.0 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 12/169 (7%)

Query: 7   HEGDIP-AECAARYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
            E D+  A    R    +  DTET      G  P      ++QL+  +    + ++    
Sbjct: 38  TESDLEQALSGMRASSLLGFDTETRPVFKKGKKPGPP--SLLQLATAE-CAYVFQLGVLP 94

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            +   +  +L + +  K     R DI  L      +        ++S   +     HGL+
Sbjct: 95  LDK-GVCDILANRRILKTGVAVRDDILGLQKHARFKPSGFVD--LSSITAKYNLQTHGLR 151

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           +    LLG  ISK+ Q S+W+ D LS +Q+ YAA+D      L L   E
Sbjct: 152 NMAANLLGFRISKSAQCSNWAKDKLSRQQVLYAATDAWISRELYLALEE 200


>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
 gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
          Length = 894

 Score = 80.0 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 69/203 (33%), Gaps = 32/203 (15%)

Query: 7   HEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------- 56
           H+  + A  A R   A  +AVDTET  L P + RL  V L   DG    +          
Sbjct: 298 HQEQLAA-LAERLAGASLVAVDTETDSLDPLKARLVGVSLCTEDGEAWYLPCGHRDEAGE 356

Query: 57  -----AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG---VRVRPVFCTKIASR 108
                    +    L  +L      KI H  +FD+AVL            P+  T I + 
Sbjct: 357 LVAGQLPLDRLIEFLRPVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPLHDTMIGAW 416

Query: 109 LTRTYTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVH 159
           L       + L D   E+  + +          K++ +  +    L +    Y+  DV  
Sbjct: 417 LLAPDRRTYKLDDLCGEI-NLRMTSYEEVTHADKSEDA--FCRVPL-EAAKNYSCEDVYG 472

Query: 160 LHALRLQFTEKLQRLGRSDLATS 182
              L  +   +L+R     L   
Sbjct: 473 ALRLYQEQLPQLERADLLALLRE 495


>gi|260802943|ref|XP_002596351.1| hypothetical protein BRAFLDRAFT_215559 [Branchiostoma floridae]
 gi|229281606|gb|EEN52363.1| hypothetical protein BRAFLDRAFT_215559 [Branchiostoma floridae]
          Length = 503

 Score = 80.0 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 48/204 (23%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQ-----K 61
           A+   +    + +D E     P         R+ IVQL+  D    +  IA  Q     K
Sbjct: 27  AQRLLQPGTMVGLDAE---WRPSFGNTLITQRVSIVQLAIKDKVYILDMIALVQNTEMGK 83

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV--------------------- 100
                  +L  +    I +    D  +L  ++      +                     
Sbjct: 84  LQDFFSSLLASQDVIIIGYGIDGDFQMLGRSYPFLREALSKRKSVIDLSHVHKANPALLT 143

Query: 101 FC---------TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ 151
           F          T  AS      ++ HGL   +++ LG+ ++K +Q SDW    L   Q+ 
Sbjct: 144 FDAGETTDDDFTGEASA----KSDAHGLSQLVQQCLGLPLAKTEQLSDWERRPLRKAQIL 199

Query: 152 YAASDVVHLHALRLQFTEKLQRLG 175
           YA+ D   L  +    T++++  G
Sbjct: 200 YASLDAYCLLEVYDVLTKRVKDAG 223


>gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1]
 gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
          Length = 978

 Score = 80.0 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 29/185 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------A 58
           AR    +A+DTET  L P +  LC + L+        + ++                   
Sbjct: 384 ARETGVVALDTETTSLDPMQAELCGIALATAPNRAAYLPLSHKNGAEDLLGGGMVDGQIR 443

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
            ++    L  +L D    KI    ++D  +L+   G+ + P   T + S +    T  HG
Sbjct: 444 VEEALAVLRPLLQDPSVLKIGQNLKYDWVLLYRH-GIEIAPYDDTMLISYVLEAGTQAHG 502

Query: 119 LKDNLKELLGINIS--KAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEK 170
           +    +  LG      K    S      ++ + +       YA+ D      L      +
Sbjct: 503 MDALAERWLGHTPVSYKEVTGS--GRSKVTFDMVGLERATVYASEDADVTLRLWKVLKPQ 560

Query: 171 LQRLG 175
           L   G
Sbjct: 561 LAAKG 565


>gi|212704372|ref|ZP_03312500.1| hypothetical protein DESPIG_02427 [Desulfovibrio piger ATCC 29098]
 gi|212672197|gb|EEB32680.1| hypothetical protein DESPIG_02427 [Desulfovibrio piger ATCC 29098]
          Length = 201

 Score = 80.0 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 8/160 (5%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           A    +    +  DTET     R+ R+    +VQL+     V +++++      P L G+
Sbjct: 39  ALPDLQQEQVLGFDTET-RPSFRKGRVNTPSLVQLATA-RAVYLVQLSWW-PFGPELAGL 95

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K       D+  L   +  +   +    + +R         GL+     L G 
Sbjct: 96  LADPAVIKAGVAIGDDMRELARLYPFKPAGMVDLGMVAR--AHQLTTQGLRTLAANLFGQ 153

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            ISK  Q S+WS  +LS  Q+ YAA+D     A+ L+  E
Sbjct: 154 RISKGPQCSNWSVMELSKRQVIYAATDAWIGRAIYLRMRE 193


>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
 gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
          Length = 920

 Score = 80.0 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 77/196 (39%), Gaps = 21/196 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDE 73
           R    +++DTET    P    L  +  +  +     + I + ++ A  +V +      + 
Sbjct: 345 RTKSILSLDTETTSTNPIDAELVGLSFAVEEKKAFYVPIPSNRQEAQKIVNIFKPIYENP 404

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---IN 130
              K+    ++D+ VL          +F T +A  + +    +H +    + LL    I+
Sbjct: 405 DILKVGQNLKYDLEVLHNYGVTLKGKMFDTMLAHYVIQPEL-RHNMDYMAETLLNYRTIH 463

Query: 131 IS-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           I        K Q+    S  +L  +++ +YAA D      L+     KL+ +   DL  +
Sbjct: 464 IDELIGPRGKNQK----SMRELDPKEVYEYAAEDADITLQLKNVLETKLKEMECEDLFWN 519

Query: 183 -CCNFLMDRAELDLLG 197
                +   AE+++ G
Sbjct: 520 IEMPLMPVLAEIEMNG 535


>gi|194743424|ref|XP_001954200.1| GF18156 [Drosophila ananassae]
 gi|190627237|gb|EDV42761.1| GF18156 [Drosophila ananassae]
          Length = 586

 Score = 80.0 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 8/159 (5%)

Query: 18  RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +    +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L D+  
Sbjct: 75  QKFKVLGFDCEWITVGG-SRRP-VALLQLSSHQGLCALFRLCHMKQIPKDLRELLEDDAV 132

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    + D   L + +GV V      +    +        GL       L   + K  
Sbjct: 133 IKVGVAPQEDAMKLSHDYGVGVASTLDLRFLCVMAGHKPE--GLGKLSFRHLDYPLDKNW 190

Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +   S+W A  L   QL YAA+D +   A+  +    L+
Sbjct: 191 RLACSNWEAKQLEPPQLNYAANDALVAVAIYEKLCRDLE 229


>gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
 gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
          Length = 987

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 58/191 (30%), Gaps = 35/191 (18%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------ 64
           AR    +AVDTET GL P    L  + LS   G    I +       P            
Sbjct: 390 AREAGTVAVDTETDGLTPVSAGLVGISLSVEPGRACYIPVQHIDPATPKGATGGLDLGGT 449

Query: 65  --------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
                          L  +L D    K+    +FD  +     G+ + P+  T + S + 
Sbjct: 450 PPPPPQIALADALARLKPLLEDPAVLKVGQNVKFDWQIFARH-GIAMAPIDDTMLISYVL 508

Query: 111 RTYTNQHGLKDNLKELLGINISK-------AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            T  + HG+ +     LG    K        +    +    L      YAA D      L
Sbjct: 509 GTGLHGHGMDELALRHLGHTTIKYDEVTGTGKSRITFDRVPLDKA-RDYAAEDADITLRL 567

Query: 164 RLQFTEKLQRL 174
                  L R 
Sbjct: 568 HRVLKHDLVRQ 578


>gi|149542235|ref|XP_001510635.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 692

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 67/212 (31%), Gaps = 54/212 (25%)

Query: 14  ECAARYVDAIAVDTE------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----- 62
           +   +    + +D E       +     + R+ I+Q++       +  +   +       
Sbjct: 345 DVVLQAGQVVGIDMEWKPSFGAVR----KPRVSILQMAVEGHVFLLDLLEVSKPEDRRGE 400

Query: 63  -------APNLVGMLVDEKREKIFHYGRFDIAVL------FYTFGVRVRPVFCT-KIASR 108
                  A  +  + +D    K+ +    D+  L            +V+ V    +I  +
Sbjct: 401 EEENEAFAHFIQELYLDPSITKLGYGMLGDLRNLASSGPALRDLDKQVQGVLDLFQIDKQ 460

Query: 109 LTRTYTNQH-------------------------GLKDNLKELLGINISKAQQSSDWSAD 143
           L +    +                          GL   ++ +LG  + KA+Q SDW   
Sbjct: 461 LQKRPGQRKKSSRPVDVLAQDPGPEARGAKRAEKGLSLLVQRVLGKPLDKAEQLSDWERR 520

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            L   Q+ YAASD   L  +     +   R G
Sbjct: 521 PLRPAQILYAASDAYCLLEVYRALCDDPARFG 552


>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
 gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
          Length = 921

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 25/207 (12%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63
           + D+      +  +  A DTET G+ P   +  +V +S    +     + + A    A  
Sbjct: 337 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEAAK 392

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
                   L + K  KI    +FDI VL         P+F T IA  L      +HG+  
Sbjct: 393 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 451

Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171
             +  L    ++I      K + Q S     ++  EQ+ +YAA D      L+  F  +L
Sbjct: 452 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADITLKLKNYFAPEL 508

Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197
           ++ G   L T+     +    E++  G
Sbjct: 509 KKEGLESLFTTIEMPLIYVLVEMEATG 535


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score = 79.7 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 69/202 (34%), Gaps = 25/202 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L P + RL  + L+        I +    + AP           L
Sbjct: 310 LEKASCFAFDTETTALDPMKARLVGISLALEPDEAFYIPVGHAYEGAPVQLDRDAVLRIL 369

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
                + K  KI    ++D  VL         PVF T IA+ L       +GL     + 
Sbjct: 370 APAFENTKITKIGQNVKYDWTVLSRCGFKIDGPVFDTMIAAYLLNPTRRSYGLDRLAADY 429

Query: 127 LGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           L   +       D          +SA  L +  + YAA D     +L     ++L++ G 
Sbjct: 430 LNHRM---ISYQDVTGTGKNAKCFSAVPLEEA-IPYAAEDADITFSLHRLLEKELKQGGL 485

Query: 177 SDLATS-CCNFLMDRAELDLLG 197
            +L  +     +     +++ G
Sbjct: 486 FELLETIEMPLVPVLMHMEMAG 507


>gi|145344201|ref|XP_001416625.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576851|gb|ABO94918.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 614

 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 63/183 (34%), Gaps = 39/183 (21%)

Query: 23  IAVDTE--------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----ML 70
           I +DTE                 ++  +QL+  DG   +      Q     L      M 
Sbjct: 415 IGIDTEWGAAVGEDADKEDT--SQVATLQLASEDGVAILDLPVLVQSCPEALEATIGRMF 472

Query: 71  VDEKREKIFHYGRFDIAVLFY----TFGVRVRPVFCTK----IA---SRLTRTYTN---- 115
            D+K  K+    + D+  L      +FG  VR V   +    +A   +R+T+   +    
Sbjct: 473 QDDKVLKLGFAVQEDLRRLAKCHPASFG-NVRNVADLQSLWKLAVSKARMTKETRDFPWA 531

Query: 116 ---------QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
                      GL   +  +LG  + K  + SDWS   L+ +Q  YAA D   L      
Sbjct: 532 TDEELSRYQPVGLSTMVAAVLGKPLDKTMRMSDWSKRPLTAQQRVYAALDAWTLVESHRS 591

Query: 167 FTE 169
              
Sbjct: 592 LLA 594


>gi|270003369|gb|EEZ99816.1| hypothetical protein TcasGA2_TC002596 [Tribolium castaneum]
          Length = 1249

 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 32/178 (17%)

Query: 17  ARYVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-----ML 70
            + V+ + +D E       +++ L ++Q++     V I+ I +     P+L       + 
Sbjct: 775 LQDVEVVGIDCEWKPNFGSQKNELALMQIASRK-NVFILDIISIGTKVPHLWQELGKFLF 833

Query: 71  VDEKREKIFHYGRFDIAVLFY---TFGVRVRPVFCTKIA--------------SRLTRTY 113
            +    K+      DI ++ +         +     ++                ++   Y
Sbjct: 834 NNCDILKLGFGFTSDILMIKHSLPELNFTPK-----QVGFLDLLSLWKLLEKYPKVVLPY 888

Query: 114 ---TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
               +   L   + + LG  + K+ Q S+W    L + QL YAA D   L  +     
Sbjct: 889 EVQGSGPSLGTLVNQCLGRPLDKSDQFSNWEKRPLRNSQLVYAALDAYCLIEVYDVIK 946


>gi|149737205|ref|XP_001500327.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 2
           [Equus caballus]
          Length = 620

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 13/159 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E +        L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 103 LEDFPVLGIDCEWV-----TSPLSLLQMASPSGFCVLVRLPKLVCGGKTLPKTLLDILAD 157

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130
           +   K+      D + L   +G+ V+     +  +   R     N   LK   + +L   
Sbjct: 158 DTILKVGVGCSEDASKLLQDYGLVVKGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 217

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W A++L+++Q+ YAA D     AL L  
Sbjct: 218 LDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLHL 256


>gi|15237941|ref|NP_197822.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
 gi|10177895|dbj|BAB11227.1| unnamed protein product [Arabidopsis thaliana]
 gi|30102678|gb|AAP21257.1| At5g24340 [Arabidopsis thaliana]
 gi|110743600|dbj|BAE99637.1| hypothetical protein [Arabidopsis thaliana]
 gi|332005912|gb|AED93295.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
          Length = 505

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 28/178 (15%)

Query: 23  IAVDTET---LGLMPRRDRLCIVQ----LSPGDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
           IA+D E             + ++Q    LS      D+  I     + P++  +L D   
Sbjct: 31  IALDAEWKPQHSNTSSFPTVTLLQVACRLSHATDVSDVFLIDLSSIHLPSVWELLNDMFV 90

Query: 73  -EKREKI-FHYGRFDIAVLFYTF---GVR-----------VRPVFCTKIASRLTRTYTNQ 116
                K+ F + + D+  L  TF   G             +  ++      R  R     
Sbjct: 91  SPDVLKLGFRF-KQDLVYLSSTFTQHGCEGGFQEVKQYLDITSIYNYLQHKRFGRKAPKD 149

Query: 117 H-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              L    KE+L I++SK  Q SDWS   L++EQ  YAA+D   L  +   F   L  
Sbjct: 150 IKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVE 207


>gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
 gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
          Length = 979

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 26/193 (13%)

Query: 9   GDIPAECA-ARYVDAIAVDTETLGLMPRRDRL------------CIVQLSPGDGTVDIIR 55
            D+    A AR    +AVDTET  L P + RL            C + L  G G      
Sbjct: 377 ADLDEWIARAREQGFLAVDTETDSLFPMQARLVGVSLSLLPGEACYIPLQHGAGGGLDFA 436

Query: 56  IAAGQKNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
            A GQ   P       L  +L D    KI    +FD+ VL    G++++ +  T + S  
Sbjct: 437 DAGGQPQIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQH-GIQLKGLDDTMLMSYA 495

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHAL 163
                + HG+ +  +  LG       + +      ++ +Q+       YAA D      L
Sbjct: 496 LDAGVHGHGMDELSELHLGHKPISFAEVAGKGKAQITFDQVPVDRATAYAAEDADVTLRL 555

Query: 164 RLQFTEKLQRLGR 176
                 +L    R
Sbjct: 556 WHILKPRLVAERR 568


>gi|66816197|ref|XP_642108.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|60470232|gb|EAL68212.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 718

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 35  RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94
              ++ ++QLS  + T  I +++  +K   +L  +L D +  K+      D A +F TF 
Sbjct: 220 YNHKVALIQLSSKNETFLI-QVSQMEKIPTSLEQILTDPRLIKVGVAVSQDAATIFQTFS 278

Query: 95  VRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
           V  +       IA RLT    N  GL      ++ + + K+   + S W   DL+++Q+ 
Sbjct: 279 VVTKGCVDLVPIA-RLTNYEGN--GLASLALNVMNVTLDKSNLIRCSHWENKDLTNDQIH 335

Query: 152 YAASDVVHLHALRLQF 167
           YAA+D      +    
Sbjct: 336 YAAADAWVGREIFEIM 351


>gi|198423738|ref|XP_002125788.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 [Ciona
           intestinalis]
          Length = 572

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 17  ARYVDAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEK 74
            +Y   I  D E       + + + ++QL+   G   +IR++  +   P  L  +L D  
Sbjct: 78  LQYAKVIGFDCEWTS-KSGKPQPVALLQLATVSGVCLLIRLSHYRGPLPVRLQSILSDAS 136

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K+      D   L + +G+ V      +  +  T+   N  GLK   +  LG+ ++K 
Sbjct: 137 YIKVGVGPMEDANKLLHDYGIVVSGCVDLRSLAVRTKETKNSLGLKGLAQSYLGVTMNKQ 196

Query: 135 Q--QSSDWSADDLSDEQLQYAASDVV 158
           +  Q S W A  LS EQ+ YAA+D +
Sbjct: 197 KHIQCSAWDAPSLSQEQIDYAANDAL 222


>gi|188995460|ref|YP_001929712.1| probable 3'-5' exonuclease [Porphyromonas gingivalis ATCC 33277]
 gi|188595140|dbj|BAG34115.1| probable 3'-5' exonuclease [Porphyromonas gingivalis ATCC 33277]
          Length = 200

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 17/174 (9%)

Query: 3   TIRVHEGDIPAECAARYVDA---IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIR 55
           TI + +       A R + A   I  DTE     +     R  + ++Q+S      D   
Sbjct: 21  TIHLIDKPQAIPEAIRLLSASRTIGFDTETRPSFVRG--ARPSVALMQMSTET---DCFL 75

Query: 56  IAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
                 + P  L  +L +    K+      D+ V+     +        +   RL   Y 
Sbjct: 76  FRLNMIDIPEELQQLLENPGILKVGLSLSDDMTVIRRRKPIEPAGFVELQ---RLCPAYG 132

Query: 115 NQ-HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +   L+     L G  ISK+Q+ ++W A  L+  Q  YAA D      +  Q 
Sbjct: 133 IRDASLQKIYAILFGRRISKSQRLTNWEARTLTAAQQSYAALDAWACLRIFNQL 186


>gi|324504376|gb|ADY41890.1| Exonuclease mut-7 [Ascaris suum]
          Length = 953

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 50/208 (24%)

Query: 18  RYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGD--GTVDIIRIAAG---QKNAPNLVG 68
           +    I +DTE     L  +   +++ ++Q+S       VD++++      ++       
Sbjct: 436 KTSSIIGIDTEWKPMFLSTV---EQVALLQVSIPSCSYLVDVVKLEDEVSEEEWIEFFKA 492

Query: 69  MLVDEKREKI-FHYGRFDIAVLFYTFGVR------VRPVFC-----TKIA----SRLTRT 112
           +   E   K+ F +   D+ VL  TF         ++ V C     T +     + L   
Sbjct: 493 LFCTESSIKLGFDFAN-DMRVLRATFPFLESMQPDMKNVICIMKLATSLMSENSASLDLP 551

Query: 113 YTNQHG---------------------LKDNLKELLGINISKAQQSSDWSADDLSDEQLQ 151
               HG                     L D    +LG  + K +Q  +W+   L  EQ++
Sbjct: 552 TGEAHGSDSNENTTDESPSDEQQLHFKLTDLCYRILGEPLDKREQIGNWAMRPLRPEQMK 611

Query: 152 YAASDVVHLHALRLQFTEKLQRLGRSDL 179
           YAA D   L  +  +   +       + 
Sbjct: 612 YAAMDAYCLIKIYDRMKARATEEFGMNW 639


>gi|34540197|ref|NP_904676.1| 3'-5' exonuclease domain-containing protein [Porphyromonas
           gingivalis W83]
 gi|34396509|gb|AAQ65575.1| 3'-5' exonuclease domain protein [Porphyromonas gingivalis W83]
          Length = 188

 Score = 79.3 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 17/174 (9%)

Query: 3   TIRVHEGDIPAECAARYVDA---IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIR 55
           TI + +       A R + A   I  DTE     +     R  + ++Q+S      D   
Sbjct: 9   TIHLIDKPQAIPEAIRLLSASRTIGFDTETRPSFVRG--ARPSVALMQMSTET---DCFL 63

Query: 56  IAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
                 + P  L  +L +    K+      D+ V+     +        +   RL   Y 
Sbjct: 64  FRLNMIDIPEELQQLLENPGILKVGLSLSDDMTVIRRRKPIEPAGFVELQ---RLCPAYG 120

Query: 115 NQ-HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +   L+     L G  ISK+Q+ ++W A  L+  Q  YAA D      +  Q 
Sbjct: 121 IRDASLQKIYAILFGRRISKSQRLTNWEARTLTAAQQSYAALDAWACLRIFNQL 174


>gi|325120662|emb|CBZ56217.1| putative 3'-5' exonuclease domain-containing protein [Neospora
           caninum Liverpool]
          Length = 480

 Score = 78.9 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 1/129 (0%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P LV +LV    +K       ++  L   FGV  +   C   A+      TN   L+   
Sbjct: 28  PGLVSLLVRPDVQKATQGATGEVEALQREFGVAAKNFLCLHAAAIALGCATNSRSLQALC 87

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
              L   + K+ Q S WS D LS EQ  YAA+D      +     +++ +     L  + 
Sbjct: 88  GVFLRSYLDKSLQLSTWSRDALSPEQCMYAATDAYVSRQVLFGMRDRINQKDVMRLVEAQ 147

Query: 184 CNFLMDRAE 192
              L  RA 
Sbjct: 148 -ATLQARAT 155


>gi|313674143|ref|YP_004052139.1| 3'-5' exonuclease [Marivirga tractuosa DSM 4126]
 gi|312940841|gb|ADR20031.1| 3'-5' exonuclease [Marivirga tractuosa DSM 4126]
          Length = 194

 Score = 78.9 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 10/160 (6%)

Query: 19  YVDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
             + +  DTE   +    + + + ++QL+  +    I  +  G     +LV +  D    
Sbjct: 42  KAEILGFDTEAKPVFKKGQYNPVSLIQLATEEEVFLIRNLMCGFHG--DLVRIFEDPSII 99

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K       D+  L      R        I S   +    Q G K+     L   ISKAQQ
Sbjct: 100 KTGAAIHDDLKDLQKLRKFRPEGFED--IGSIARQNGMLQSGAKNLTAIFLNKRISKAQQ 157

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           +S+W   +L+  Q+ YAA+D      +   F    +R+G 
Sbjct: 158 TSNWEKSELTQAQIDYAATDAYLGLKVYEVF----ERIGW 193


>gi|170051623|ref|XP_001861848.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167872804|gb|EDS36187.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 925

 Score = 78.9 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 23/185 (12%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK---NAPNLVGMLVD 72
                  +A D+E        + + ++QL+  D  V ++ +   Q    +   L  +   
Sbjct: 448 DLSQQSLVAFDSEWKPTFGGANEVAVIQLATRDD-VYLVDVLVSQLQGSDWSELASVFNR 506

Query: 73  EKREKIFHYGRFDIAVLFYT---FGVRVRP-----VFCTKIASRLT----------RTYT 114
           +   K+      D  +       F V   P     +   ++  R            +   
Sbjct: 507 DDVLKLAFAPSTDFNMFQKALPAFNVSYGPQSGSTILDLQVLWRKVDAIKSFQFPFKEEI 566

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
               L +  K  LG  + K+ Q S+W+   L  EQ+QYAA D   L  +     ++L+  
Sbjct: 567 TNQNLSNLSKLCLGKKLDKSNQFSNWAQRPLRREQIQYAALDAYVLLQIYDVIAKQLKAA 626

Query: 175 GRSDL 179
            R DL
Sbjct: 627 -RIDL 630


>gi|261880482|ref|ZP_06006909.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332821|gb|EFA43607.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 253

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 65/169 (38%), Gaps = 17/169 (10%)

Query: 20  VDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            D + VDTET      R    ++C++Q+S  D          G    P +  +L D   +
Sbjct: 45  SDILGVDTET-RPSFHRGEQHQVCLLQVSNRDTCFLFRLHLTGIT--PAIKRLLEDTTVK 101

Query: 77  KI---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINIS 132
           KI   +H    DI  L              + I   +         L+       G  IS
Sbjct: 102 KIGLSWHD---DIRGLQARENFTPGLFVDLQDI---VPELGVKDLSLQKLYANFFGKKIS 155

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           K Q+ S+W A  LSD+Q QYAA D      L  + T +L+R    +L  
Sbjct: 156 KRQRLSNWEAAVLSDKQKQYAAIDAWSCIHLYEEIT-RLKRTHDYELIE 203


>gi|303284617|ref|XP_003061599.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456929|gb|EEH54229.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1174

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 52/158 (32%), Gaps = 37/158 (23%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKN---APNLVGMLVDEKR--------------------EK 77
           +VQL+   G V +  +A    +   A  L  +L   +                       
Sbjct: 532 LVQLAGERGVVLVDMLALRSSSVEVAAALRAILTAPRIRTAAGASERELERHLIKTPPTV 591

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCT--KIASRLT-----RTYTNQHGLKDNLKELLGIN 130
           +    R D   L         P+      +AS L          ++ GL    +  LG  
Sbjct: 592 VGWGLRDD---LSRLAASYPGPIADAVRDVASALCLQELSGPRGHRPGLSAACEAWLGRG 648

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASD----VVHLHALR 164
           + K+Q +SDWS   L+  QL YAA D    V  L    
Sbjct: 649 LDKSQTTSDWSRRPLTAAQLAYAAQDARVCVRLLREAH 686


>gi|53712323|ref|YP_098315.1| hypothetical protein BF1031 [Bacteroides fragilis YCH46]
 gi|60680496|ref|YP_210640.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343]
 gi|253563640|ref|ZP_04841097.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52215188|dbj|BAD47781.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60491930|emb|CAH06690.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343]
 gi|251947416|gb|EES87698.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301162033|emb|CBW21577.1| putative 3'-5' exonuclease [Bacteroides fragilis 638R]
          Length = 216

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 17/178 (9%)

Query: 13  AECAARYVDAIAVDTETLGLMP--RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A    +    + +D+ET          ++ ++Q+S  D    + R+       P ++ +L
Sbjct: 36  AVAYLQSQAILGIDSETRPSFTKGHSHKVALLQISS-DECCFLFRLNMTGLTQP-IIELL 93

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD-NLKELLGI 129
            D K  K+    + D  +L              + A    + Y    G++D +L+++ GI
Sbjct: 94  EDPKVIKVGLSLKDDFMMLHKRA---PFN----QQACIELQEYVRPFGIQDKSLQKIYGI 146

Query: 130 ----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
                ISK+Q+ S+W AD L+D Q QYAA+D      +     E+L+R G  +LA   
Sbjct: 147 LFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH-LLEELKRTGNYELAPEE 203


>gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31]
 gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31]
          Length = 973

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 63/196 (32%), Gaps = 51/196 (26%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA------------- 63
           A     +A DTET  L      LC V L+   G    I +   +K+              
Sbjct: 380 ATAKGIVAFDTETDALSSATAGLCGVSLAISPGEACYIPVGHCEKDGLALEAAADLVQVP 439

Query: 64  -----PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  L  +L D    KI    ++DIAVL    G+ V P+  T + S +     + HG
Sbjct: 440 MEEVIAALKPLLEDPAVLKIAQNAKYDIAVLARY-GINVGPIEDTMLISYVLEAGLHGHG 498

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQL-------------------QYAASDVVH 159
           + +  +  LG                +S +Q+                    YAA D   
Sbjct: 499 MDELSELWLGHK-------------PISFKQVAGSGKGQISFKHVGLAEATAYAAEDADV 545

Query: 160 LHALRLQFTEKLQRLG 175
              L      +L R G
Sbjct: 546 TLRLYNVLKPRLAREG 561


>gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 923

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 23/194 (11%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76
           D +++DTET G  P   +L  +  S  +     + I    + A         +  DE+  
Sbjct: 351 DFLSLDTETTGTDPISAKLVGLSFSVEENQAFYVPIPQDFEEAQKIVNEFKSVYEDERIL 410

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           KI    ++D+ VL          +F T IA  L +    +HG+    +  L    I+I  
Sbjct: 411 KIGQNIKYDLMVLQNYGITLKGEIFDTMIAHYLLQPEL-RHGMDYLAEVYLNYQTIHIEE 469

Query: 133 ------KAQQS-SDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
                 K Q++ +D     L   Q+ +YA  D      L+  F  KL+  G  DL     
Sbjct: 470 LIGPKGKNQKNMAD-----LPPSQVYEYACEDADITLKLKNVFEPKLKEEGCYDLFREVE 524

Query: 184 CNFLMDRAELDLLG 197
              +   A ++  G
Sbjct: 525 MPLMPVLAWMERNG 538


>gi|289758809|ref|ZP_06518187.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis
           T85]
 gi|289714373|gb|EFD78385.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis
           T85]
          Length = 277

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%)

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           K   ++DWS   L    L YAA DV  L  LR   +  L   G++D A      L
Sbjct: 2   KGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHL 56


>gi|265762514|ref|ZP_06091082.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255122|gb|EEZ26468.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 216

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 21/180 (11%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + +D+E             ++ ++Q+S  D    + R+       P ++ 
Sbjct: 36  AVVYLQSQTILGIDSETRPSFTKGHSH--KVALLQISS-DECCFLFRLNMTGLTQP-IIE 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD-NLKELL 127
           +L D K  K+    + D  +L              + A    + Y    G++D +L+++ 
Sbjct: 92  LLEDPKVIKVGLSLKDDFMMLHKRA---PFN----QQACIELQEYVRPFGIQDKSLQKIY 144

Query: 128 GI----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           GI     ISK+Q+ S+W AD L+D Q QYAA+D      +     E+L+R G  +LA   
Sbjct: 145 GILFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH-LLEELKRTGNYELAPEE 203


>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
 gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
          Length = 889

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 22/215 (10%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T    E D+ A           A+DTET GL P +  L  +  S          +     
Sbjct: 292 TALTTEEDLEALAENLEKAGVFALDTETTGLDPMQASLVGMSFSYEADRAFYAPLTHDYL 351

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
            AP+          L  +L + + +KI    ++D  VL    G  ++ V F T +AS L 
Sbjct: 352 GAPDQVGVEKALEILGPVLSNPEIKKIGQNIKYDWIVLARH-GADLQGVAFDTMVASYLL 410

Query: 111 RTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
                 HGL     ELL   +        K  ++  ++   L    + YA  D      +
Sbjct: 411 NPSHRSHGLDQIAMELLEHRMISYEEVCGKGAKAITFNQVPLEKA-VPYACEDADVTFQI 469

Query: 164 RLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
                 KL++    +L  +     +    ++++ G
Sbjct: 470 YGLLQPKLEKNQLLELFKTVEMPLVRVLVKMEMEG 504


>gi|167516320|ref|XP_001742501.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779125|gb|EDQ92739.1| predicted protein [Monosiga brevicollis MX1]
          Length = 880

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 35/145 (24%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE       R    ++Q++ GD    +  +      A                   
Sbjct: 739 VGIDTE---WRSPRPTCSLIQVAMGDDVFLLDAVPGMGDAA------------------- 776

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
                            V   +  ++       + GL   +  +LG  + K  Q S+W  
Sbjct: 777 -------------YAYEVVDVQPLAQSWLQRKKRPGLGTVVAAVLGQTLDKRNQCSNWDR 823

Query: 143 DDLSDEQLQYAASDVVHLHALRLQF 167
             L  +Q +YAA D   L  L  Q 
Sbjct: 824 RPLRPDQAEYAAIDAWCLAPLYEQL 848


>gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
 gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
          Length = 972

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 77/212 (36%), Gaps = 26/212 (12%)

Query: 7   HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--AAGQKNA 63
            + D+ A  A       +A DTET G+ P RD L  + L+   G    I +    G+   
Sbjct: 371 TDADLEAVVAELATAPLVAFDTETRGMNPLRDDLVGLSLATVPGRAWYIPVGHTTGEMQL 430

Query: 64  P------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116
           P       L     D  R K+ H  +FDI VL    G+ V  + F T +A+ L      +
Sbjct: 431 PRDRVIAALRSFFADPARPKVAHNAKFDIEVLERA-GMPVAGLSFDTMLAAGLLD---KR 486

Query: 117 HGLKDNL--KELLGINIS-------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
             LKD    +  L   +        K +    ++   ++    +YAA+D      L+   
Sbjct: 487 RNLKDLAFYELELAEPLDAIGDLIGKGKNQVTFAEVPIARA-TRYAAADADMTLRLQPAL 545

Query: 168 TEKLQRLGRSD--LATSCCNFLMDRAELDLLG 197
             KL+  G             +     ++  G
Sbjct: 546 EAKLRAAGSLADMFYRLEMPLVPVLVRMEQSG 577


>gi|291514664|emb|CBK63874.1| Ribonuclease D [Alistipes shahii WAL 8301]
          Length = 202

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 66/174 (37%), Gaps = 17/174 (9%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAA 58
           I  HE DI A C        I  DTET      R     R+ ++QLS       + R+  
Sbjct: 30  IVEHERDIAAACKTLAEQPVIGFDTET--RPSFRPGVTFRVSLLQLSTP-TVCYLFRLNK 86

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTN 115
                P L  +L D +  KI        D+  L      R       + IA         
Sbjct: 87  IPLAKPIL-QLLEDRRILKI--GADVAGDLRSLRQIRHFRDGGFVDLQGIA---PEWGIG 140

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           +  L+     +LG  +SKAQ+ S+W A  L+D+Q  YAA+D      +  Q   
Sbjct: 141 EKSLRKLSAIVLGRRVSKAQRLSNWEAATLTDKQQLYAATDAWVCTRIYEQLLR 194


>gi|124800774|ref|XP_001349559.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7]
 gi|3845126|gb|AAC71832.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7]
          Length = 416

 Score = 78.9 bits (194), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 23  IAVDTETLGLMPR-RDRLCIVQLSPGD-GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           I +D E  G        + I+Q+   D    DI +          +  +L  +   K+ H
Sbjct: 77  IGLDIE--GYKIGKYGIVSIIQICYEDIYIFDIYKCDNVYLFINYIKDILECDDIIKVTH 134

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIA------SRLTRTYTNQHGLKDNLKELL------G 128
             R D ++L+  + + ++ +  T++A      +    T T Q    D LK+ L       
Sbjct: 135 DCREDCSILYNQYNIHLKNILDTQVAYNLLLKNNNNYTNTYQISYDDLLKKYLFINNNHK 194

Query: 129 INISKAQQSSD--WSADDLSDEQLQYAASDVVHLHAL 163
           I   K     +  +    +  E + YA  DV++L  L
Sbjct: 195 IYFHKMITLDNYIYLKRPIMKELISYAIQDVIYLKPL 231


>gi|289743269|gb|ADD20382.1| putative salivary expressed 3'-5' exonuclease [Glossina morsitans
           morsitans]
          Length = 339

 Score = 78.5 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 6/188 (3%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           R+   +  D E + +   R+ + ++QL+  +G   + R+        +L  +L D++  K
Sbjct: 68  RHYKVLGFDCEWITVGRVRNPVALLQLASPNGFCGLFRLRHMHHIPESLKNLLRDKEIIK 127

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA--Q 135
           +      D   L   +G+ V   F  +  + + R      GL+   + LL ++  K    
Sbjct: 128 VGVDPAGDARKLQEDYGIYVASTFDIRYLAVMIRC--KPLGLEKLSRSLLNVDFVKRGYI 185

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE--L 193
             S+W  D L D+Q++YAA+D      +      +L+     +   +    +  + +  L
Sbjct: 186 GRSNWEFDKLDDDQVEYAANDAFAGVEIFKHLANRLKPRNYWNFTNTDFMAIKSQIKYLL 245

Query: 194 DLLGWENV 201
           DL   E+ 
Sbjct: 246 DLDFSEDT 253


>gi|332882913|ref|ZP_08450520.1| 3'-5' exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679121|gb|EGJ52111.1| 3'-5' exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 206

 Score = 78.5 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 13/164 (7%)

Query: 22  AIAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            + VDTET      R    +++ ++Q+S  D T  + R+            +L DE   K
Sbjct: 46  VLGVDTET--RPSFRKGCTNKVALLQVST-DDTCFLFRLNHIGVTESV-KRLLQDENVLK 101

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINISKAQQ 136
           +    R D A L        R     +      R +      L+     + G  ISK Q+
Sbjct: 102 VGLSLRDDFASLHKRGEFEPRAFLDLQ---DYVRAFGIEDMSLQKLYANIFGQKISKGQR 158

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            ++W AD L++ Q  YAA+D      L  +  E L+     +LA
Sbjct: 159 LTNWEADVLTEGQKLYAATDAWACIRLYREL-ETLKENNDYELA 201


>gi|154494239|ref|ZP_02033559.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC
           43184]
 gi|154086101|gb|EDN85146.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC
           43184]
          Length = 193

 Score = 78.5 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 20/157 (12%)

Query: 22  AIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           ++  DTE             ++ ++Q+S  +          G   A  L   L +EK  K
Sbjct: 47  SVGFDTETRPSFKKGQRY--KISLMQISTDEACFLFRLNRIGIPEA--LEEFLANEKVLK 102

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINIS 132
           I    R D   +     ++              + Y  Q G     L+     L    IS
Sbjct: 103 IGLSLRDDFGAMRKRTDIQPANFLD-------LQNYVGQFGIEDASLQKIYAILFNKKIS 155

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           K Q+ S+W AD LSD Q +YAA D      +  Q  +
Sbjct: 156 KGQRLSNWEADVLSDAQKKYAALDAWACLKIYNQLKQ 192


>gi|156363461|ref|XP_001626062.1| predicted protein [Nematostella vectensis]
 gi|156212924|gb|EDO33962.1| predicted protein [Nematostella vectensis]
          Length = 363

 Score = 78.5 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 3/137 (2%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           +QL+     + +          P +L+ +L + +  K+      D   L     +     
Sbjct: 113 LQLAVNHSCLVLHLFHMRLDLLPRSLLNVLGNIRILKVGSGISGDAVKLLRDTEILCNGR 172

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVV 158
             T++ +++     +  GLK   K +LGI + K +    S+W    L+ EQ  YAA D  
Sbjct: 173 SDTQVYAKVLALNQDGTGLKKLAKTILGIELDKPKYISLSNWELFPLTYEQASYAALDAW 232

Query: 159 HLHALRLQFTEKLQRLG 175
               L ++  ++L + G
Sbjct: 233 VSFKLFVELKQRLHKSG 249


>gi|74216614|dbj|BAE37741.1| unnamed protein product [Mus musculus]
          Length = 650

 Score = 78.5 bits (193), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 14/162 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E + L  +   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 128 LEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGFCALVRLPRLIYGGRTLPRTLLDILAD 187

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELL 127
               K+      D   L   +G+ VR          L     N        LK   + +L
Sbjct: 188 GAILKVGVGCSEDANKLLQDYGLIVRGCLD---LRYLAMKQGNNILCNGLSLKSLAETIL 244

Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              + K+   + ++W A++L+++Q+ YAA D     AL L  
Sbjct: 245 NFPLDKSLLLRCNNWDAENLTEDQVTYAARDAQISVALFLHL 286


>gi|301095852|ref|XP_002897025.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108454|gb|EEY66506.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 414

 Score = 78.5 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 16/176 (9%)

Query: 15  CAARYVDA--IAVDTET---LGLMPRRDRLCIVQLSPGD----GTVDIIRIAAGQKNA-- 63
           C+ R ++A  +  DTET        RR+   ++Q++  D      V I+ +         
Sbjct: 36  CSTRLLNAQVMGFDTETRPIWSKHQRRNPCALLQIAVRDANQKEEVFILDLLHLSAKVYN 95

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
             L  + + +   K+      D+  L       +     + V      S       N   
Sbjct: 96  TTLTNVFLSKTVVKLGQSFYQDLQELAESYPQASCFTVCKGVVEVNDLSISLAGAHNPLS 155

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           L+  +   L   ++K QQ S+W+   L+  QL YAA+D + L  L  +   ++Q+ 
Sbjct: 156 LQKLVFFYLHHKLTKTQQMSNWARRPLTPSQLHYAAADALVLIHLYDELLMRIQKQ 211


>gi|170094937|ref|XP_001878689.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645993|gb|EDR10239.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 532

 Score = 78.5 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 22/181 (12%)

Query: 7   HEGDIPAECAARYVDAIAVDTE----TL---GLMPRRDR-LCIVQLSPGDGTVDIIRIAA 58
           HE +            +++D E         G     +R + +VQ++   G V II+I  
Sbjct: 217 HEEEADDLVLGLKPGPVSLDLEWCFYFTKNKGTTTLNERRVAVVQVTDVCGMVLIIQIFG 276

Query: 59  GQKNAPNLVGMLVDEKREK----IFHYGRFDIAVLFYTFGVRVRPVFC----TKIASRLT 110
            ++   NL  ++ +    K    I      D   LF  +G+  + +        +A    
Sbjct: 277 MRRFPKNLQSLIENPNVPKMGVNIL----NDGKKLFRDYGILAQSLVELGALAMVADPAA 332

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSS-DWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           +       L   +++  G  + K    + +W A  L  EQ+ YAA+D      +  +  +
Sbjct: 333 KRRRKMVSLAKLVEQYCGKLLEKGSIRTGNWEAK-LDQEQIDYAANDAHSTIQVYNELVK 391

Query: 170 K 170
            
Sbjct: 392 M 392


>gi|76628167|ref|XP_587937.2| PREDICTED: exonuclease 3'-5' domain containing 2 [Bos taurus]
 gi|297479852|ref|XP_002691029.1| PREDICTED: exonuclease 3'-5' domain containing 2 [Bos taurus]
 gi|296483016|gb|DAA25131.1| exonuclease 3'-5' domain containing 2 [Bos taurus]
          Length = 628

 Score = 78.5 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 8/155 (5%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKRE 76
             + +D E +    +   L ++Q++   G   ++R+      G+     L+ +L D    
Sbjct: 110 PVLGIDCEWVNSEGKASPLSLLQMASPSGFCVLVRLPKLICGGKTLPKTLLDILADGTIL 169

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGINISKA 134
           K+      D + L   +G+ V+     +  +   R    +N   LK   + +L   + K+
Sbjct: 170 KVGVGCSEDASKLLQDYGLVVKGCLDLRYLAMRQRNNLLSNGLSLKSLSETVLNFPLDKS 229

Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              + S+W A++L+++Q+ YAA D     AL L  
Sbjct: 230 LLLRCSNWDAENLTEDQVIYAARDAQISVALFLHL 264


>gi|73963367|ref|XP_547872.2| PREDICTED: similar to Protein C14orf114 isoform 1 [Canis
           familiaris]
          Length = 623

 Score = 78.5 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E +    R   L ++Q++   G   ++R+      G+     L+ +L D
Sbjct: 101 LEDFPVLGIDCEWVNSEGRASPLSLLQMASPSGFCVLVRLPKLICGGKTLPKTLLDILAD 160

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT---------NQHGLKDNL 123
               K+      D + L   +G+ V+            R            N   LK   
Sbjct: 161 GTILKVGVGCSEDASKLLQDYGLVVKGCLD-------LRYLAVRQRNNLLCNGLSLKSLA 213

Query: 124 KELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + +L   + K+   + S+W A++L+++Q+ YAA D     AL L  
Sbjct: 214 ETVLNFPLDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLHL 259


>gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
 gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
          Length = 923

 Score = 78.1 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 23/194 (11%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76
           D +++DTET G  P   +L  +  S  +     + I    + A         +  DE+  
Sbjct: 351 DFLSLDTETTGTDPISAKLVGLSFSVKENQAFYVPIPQDPEEAQKIVNEFKSVYEDERIL 410

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           KI    ++D+ VL          +F T IA  L +    +HG+    +  L    I+I  
Sbjct: 411 KIGQNIKYDLMVLQNYGITLKGEIFDTMIAHYLLQPEL-RHGMDYLAEVYLNYQTIHIEE 469

Query: 133 ------KAQQS-SDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
                 K Q++ +D     L   Q+ +YA  D      L+  F  KL+  G  DL     
Sbjct: 470 LIGPKGKNQKNMAD-----LPPSQVYEYACEDADITLKLKNVFEPKLKEEGCYDLFREVE 524

Query: 184 CNFLMDRAELDLLG 197
              +   A ++  G
Sbjct: 525 MPLMPVLAWMERNG 538


>gi|24372736|ref|NP_716778.1| exonuclease, putative [Shewanella oneidensis MR-1]
 gi|24346805|gb|AAN54223.1|AE015559_7 exonuclease, putative [Shewanella oneidensis MR-1]
          Length = 261

 Score = 78.1 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 60/166 (36%), Gaps = 10/166 (6%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A         +  DTET             L +VQL+  D T  + + A        L  
Sbjct: 71  ALQQLSRESVLGFDTET--RASFEPSVQHPLSLVQLATAD-TCYLFQQAVLGDAFAQLKP 127

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L +E+  K+    R D   L   + + V P      A         + G +  +  LL 
Sbjct: 128 LLENEQILKVGIGLRGDGQALKRDWNILVSPRLDLNWAMAQLGA-GKEMGTRQLVAVLLH 186

Query: 129 INISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
             I K      S+W    LS  Q+QYAA D +  +    Q  EKL+
Sbjct: 187 QRIDKPKKITLSNWQQVPLSPAQIQYAALDALAANHCFWQLIEKLR 232


>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
 gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
          Length = 917

 Score = 78.1 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 20/191 (10%)

Query: 2   TTIRVHEG-DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           TTI  HE  D+  +  A   D IA+DTET  L     +L  +  +   G    + +    
Sbjct: 319 TTIYTHEELDLWIDKLA-NADLIAIDTETTSLNYMDAKLVGISFAIEAGKAAYLPLGHDY 377

Query: 61  KNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
            +AP           L  +L + + +K+    ++DI++     G++++ + F T + S +
Sbjct: 378 LDAPEQLDQAEALAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIAFDTMLESYV 436

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHAL 163
             +   +H + D   + LG      ++ +      L+  Q+       YAA D      L
Sbjct: 437 FNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQIDLETAAPYAAEDADITLRL 496

Query: 164 RLQFTEKLQRL 174
                 +L++ 
Sbjct: 497 HQHLWPRLEKE 507


>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
 gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
          Length = 937

 Score = 78.1 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 15/129 (11%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN------------ 62
             AR    +AVDTET  L     RL  V LS G G    I +  G  +            
Sbjct: 349 ADARAAHVVAVDTETASLDSVTGRLVGVSLSTGAGKACYIPLGHGGTDMFAEKPEQIAMG 408

Query: 63  --APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +  D+   K+ H  ++DI VL    GV V P   T + S       +QHGL 
Sbjct: 409 DALERLGALFADDAVLKVGHNLKYDIGVLAQH-GVTVAPYDDTLLMSFALDAGKHQHGLD 467

Query: 121 DNLKELLGI 129
           +  K  L  
Sbjct: 468 ELAKLHLDH 476


>gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1]
 gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1]
          Length = 1027

 Score = 78.1 bits (192), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 22/211 (10%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA- 63
            +E ++ A          +A+DTET     R   L  + ++   G    I + A   +  
Sbjct: 431 TNESELKALAVELAKQTVLAIDTETTSTHARGCDLVGISIAWQPGEAAYIPVRAPDGDPA 490

Query: 64  -------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTN 115
                    L  +L     EK+ H  +FD+ VL  + GV++  +   T +A  L  +   
Sbjct: 491 INELIVIEILRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITMDTMVADYLLNSGGR 549

Query: 116 QHGLKDNLKELLGI-NIS-KAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167
            HGL D  +  L   N+S K    +      ++ +Q+       YA  DV     L    
Sbjct: 550 NHGLDDLAQRRLDHTNLSIKDLIGT--GKKQITMDQVPVDDVSPYACEDVDVPIRLAPTL 607

Query: 168 TEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
            ++L   G   L            AE++  G
Sbjct: 608 RDELNESGLDGLFDEVEMPLTEVLAEMEFNG 638


>gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
 gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
          Length = 921

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 17/179 (9%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65
           A +  D  A+DTET  L   +  L  V ++   G    I        AP+          
Sbjct: 337 ALKNADVFALDTETTSLNYMQAELVGVSVAVEAGKAAYIPFGHNYPGAPDQLDKQFVLDA 396

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           L  +L D+  +K+    ++D++VL    G+ +R V + T + S +  +   +H +     
Sbjct: 397 LKPILEDDNLKKVGQNLKYDMSVLAEDVGITLRGVAYDTMLESYVLDSVATRHDMDSLAL 456

Query: 125 ELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRS 177
           + LG      ++ +   A  L+  Q+      +YAA D      L      KL++ GR 
Sbjct: 457 KYLGRKTISFEEIAGKGAKQLTFNQVGLHEASRYAAEDADVTLRLHQTLWPKLEKEGRL 515


>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
 gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
          Length = 921

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 25/207 (12%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNA-- 63
           + D+      +  +  A DTET G+ P   +  +V +S    +     + + A       
Sbjct: 337 QADLARFLLGQ--EFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPANSVEVAK 392

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
                   L + K  KI    +FDI VL         P+F T IA  L      +HG+  
Sbjct: 393 VVERFSPALQNPKSLKIGQNIKFDILVLRKYNVKVAGPLFDTMIAHYLLNPEL-RHGMDY 451

Query: 122 NLKELLG---INIS-----KAQ-QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171
             +  L    ++I      K + Q S     ++  EQ+ +YAA D      L+  F  +L
Sbjct: 452 LAETYLKYQTVHIEELIGPKGKNQLS---MRNVPVEQIAEYAAEDADITLKLKNYFAPEL 508

Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197
           ++ G   L T+     +    E++  G
Sbjct: 509 KKEGLESLFTTIEMPLIYVLVEMEATG 535


>gi|294056543|ref|YP_003550201.1| 3'-5' exonuclease [Coraliomargarita akajimensis DSM 45221]
 gi|293615876|gb|ADE56031.1| 3'-5' exonuclease [Coraliomargarita akajimensis DSM 45221]
          Length = 211

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 14/156 (8%)

Query: 23  IAVDTETLGLMP------RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           +  DTET    P            ++QL+  D  V + RI+  +   P L  +L   +  
Sbjct: 56  LGFDTET---RPTFKKGEYYP-PALIQLATAD-CVYLFRISKSETLQP-LKAILESPQIL 109

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K     + D+  L      +       +I     +      GL+     LL   ISKA Q
Sbjct: 110 KTGIGIKEDVRELRAMEDFQPSGFL--EITELTLKLGYENRGLRPLTGLLLNGRISKAAQ 167

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            S+W+  +L  +Q++YAA+D      L L+  ++++
Sbjct: 168 VSNWARQELDQKQIRYAATDAWVSRELYLRAQQEIE 203


>gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21]
 gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21]
          Length = 944

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 67/189 (35%), Gaps = 35/189 (18%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLC-IV--QLSPGDGTVDIIRIAAGQKN----------- 62
           AR    +AVDTET  L      LC +V   L+ G      I +  G  +           
Sbjct: 352 ARSARLVAVDTETTSLDCM---LCDLVGVSLATGPNQACYIPLGHGGSDMFAEKPQQIGK 408

Query: 63  ---APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI------ASRLTRTY 113
                 L  +L D+   K+F  G++D+ VL    G+ V P+  T I      A R     
Sbjct: 409 AEALAALKPLLEDDAVLKVFQNGKYDLNVLARE-GIAVAPIDDTMIISFALDAGRSESGI 467

Query: 114 TNQHGLKDNLKELLGI------NISKAQQSS-DWSADDLSDEQLQYAASDVVHLHALRLQ 166
              HG+ +  +  LG        +    + +  ++   L     +YAA D      L   
Sbjct: 468 GGGHGMDELAERHLGHPCISFKELCGTGRKAIPFAEVPLDKA-TEYAAEDADVTWRLHAM 526

Query: 167 FTEKLQRLG 175
              +L   G
Sbjct: 527 LKRRLPVEG 535


>gi|168037922|ref|XP_001771451.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677178|gb|EDQ63651.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 565

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 64/189 (33%), Gaps = 39/189 (20%)

Query: 16  AARYVDAIAVDTET--LGLMPRRDRLCIVQLS---------PGDGTVDIIRIAAGQ--KN 62
           A      +A+D E   +       R+ I+Q+S          G+  + ++ + A      
Sbjct: 47  ALEEAMIVAMDAEWKPVRRAGVSPRVSIMQISCRIRKDEFITGEEVIFVLDLLALSAADF 106

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFC-----TKIAS--------- 107
           A  L  ML   +  K+    + D   L  +F G      F        IA          
Sbjct: 107 AFPLKTMLCSPRILKLGFAFKQDQLHLSASFPGPEANGCFDKVEPYIDIAKLYKEFLHVN 166

Query: 108 ---------RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
                    R     T  H L    K +LG  + K  Q S+W    LS +Q+ YAA+D  
Sbjct: 167 FSNLKHKGKRFVLGGT--HSLTAISKAVLGHPLCKDAQCSNWEQRPLSQDQILYAAADTH 224

Query: 159 HLHALRLQF 167
            L AL    
Sbjct: 225 CLLALFDTL 233


>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
 gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
          Length = 933

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 70/190 (36%), Gaps = 18/190 (9%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           T+   E   P    AR     A+DTET GL  ++ RL  + L+   G    I +      
Sbjct: 334 TVTTVEALEPWLTEARKAGLFAMDTETDGLDAQQCRLVGISLAIAPGKACYIPLDHQTTL 393

Query: 57  ------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
                  A  + A  L  +L D    KIF  G+FD+AVL       + P+  T + S   
Sbjct: 394 DQPVRQPAIAEIAAALNPILADPTVLKIFQNGKFDLAVLRRHQMPVIAPIDDTMLISYAQ 453

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
               + HG+ +     LG +     Q +    + L   Q+       YAA D      L 
Sbjct: 454 EAGAHGHGMDELSVLHLGHSPISYDQVTGTGRNRLPFPQVPIDKATAYAAEDADVTLRLW 513

Query: 165 LQFTEKLQRL 174
                +L+  
Sbjct: 514 HALRPRLRET 523


>gi|281204580|gb|EFA78775.1| 3'-5' exonuclease domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 717

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 11/162 (6%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
            R+ ++Q+S       ++++    +   +L+ +L D +  K+      D   +F  F + 
Sbjct: 190 PRVALIQISTA-TDAYLLQMTQMSRIPKSLIAILTDPRILKVGVAINQDATTIFKNFNIL 248

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELL-GINISKAQ--QSSDWSADDLSDEQLQYA 153
            +        +RLT    N  GL       L G N+ K    + S W    LS EQ+ YA
Sbjct: 249 TKGCVDLVPLARLTNYAGN--GLASLAYSTLNGCNLDKNHLVRCSHWELATLSAEQIHYA 306

Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           A D     A+  Q      +  R + A SC +     + +D 
Sbjct: 307 ACDAWISLAIYTQML----QTYRRNRALSCPDE-PTPSSMDF 343


>gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
 gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
          Length = 933

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 63/181 (34%), Gaps = 29/181 (16%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAGQKNA-------------- 63
             +AVDTET GL      L  + L    GT   I +   AAG  +               
Sbjct: 346 GYVAVDTETTGLNEMTAELVGISLCVEPGTACYIPLIHKAAGSDDLFGSDDLAEGQMPLE 405

Query: 64  ---PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +L DE   KI    ++D  V     G+ V P+  T + S       + HG+ 
Sbjct: 406 TALEMLKPVLEDESILKIGQNMKYDAKVFAQ-VGITVAPIDDTMLMSYAMHGGLHGHGMD 464

Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              +  LG         +   + +  +    LS+  + YAA D      L  QF   L R
Sbjct: 465 ALSERYLGHTPLPIKPLLGSGKSAITFDKVPLSEA-VPYAAEDADVTLRLWQQFKPALHR 523

Query: 174 L 174
            
Sbjct: 524 A 524


>gi|328783376|ref|XP_001121410.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like [Apis
           mellifera]
          Length = 613

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 19/162 (11%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           D +  D E +   P    + ++QL+  +G   + RI         L  +L +++  K+  
Sbjct: 84  DVLGFDCEWVNEGP----VSLLQLATFNGVCGLFRIGKIGYIPQKLEELLANKRILKVGV 139

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH------GLKDNLKELLGINISK- 133
               D   +   +G +V             RT   +        L     + LG+ + K 
Sbjct: 140 ASYEDGQKIIADYGCKVCNTLD-------LRTLAERVNLPSPKSLAAMSLQYLGLEMDKL 192

Query: 134 -AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
              + S+W+A  L+DEQ+ YAA D +    +  Q  +K++  
Sbjct: 193 IKVRCSNWNAGTLTDEQVAYAACDALASVLIYDQILQKIKEK 234


>gi|16549645|dbj|BAB70838.1| unnamed protein product [Homo sapiens]
          Length = 599

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61
                +    + VD E     +     R R  ++Q++       +  +A  Q        
Sbjct: 109 EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 166

Query: 62  -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117
             +  +  +L D    K+ +    D+  L  +           +I   +     ++    
Sbjct: 167 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 224

Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                          GL   ++++LG  + K QQ S+W    L +EQ+ YAA+D   L  
Sbjct: 225 ASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLE 284

Query: 163 LRLQFTEKLQR 173
           +      +  R
Sbjct: 285 VHQALCREPAR 295


>gi|320169455|gb|EFW46354.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1559

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 54/198 (27%)

Query: 20  VDAIAVDTETLG-LMPRRD--RLCIVQLSPG------DGTVDIIRIAAGQKNAP---NLV 67
           VD +AVD E +G   P ++  RL +VQ++        +G V ++ + +    A     L 
Sbjct: 756 VDRVAVDCEWIGDGQPGQEEERLSLVQIAAPATPTHVNGVVYLLDLLSDCAPASIIAPLG 815

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L  +   K+FH  R D+A+L  + G+  V     T+        Y     L+  +   
Sbjct: 816 VLLARQTIVKVFHDARKDVALLTRSTGIAAVHNYADTQ------AEYAILQSLRQLVHNE 869

Query: 127 LGINISKAQQSSD-----------------------------------WSADDLSDEQLQ 151
            G+ +  +   ++                                   W    L  + + 
Sbjct: 870 AGVALVPSGTGANVPARVGLNALFEQLALPTNPLKATFAARFRTEKHLWQRRPLDRDSIV 929

Query: 152 YAASDVVHLHALRLQFTE 169
           YAA D +HL   R    +
Sbjct: 930 YAAYDTLHLLRARDMIRQ 947


>gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47]
          Length = 975

 Score = 78.1 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 22/211 (10%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA- 63
            +E ++ A          +A+DTET     R   L  + ++   G    I + A   +  
Sbjct: 379 TNESELKALAVELAKQTVLAIDTETTSTHARGCDLVGISIAWQPGEAAYIPVRAPDGDPA 438

Query: 64  -------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTN 115
                    L  +L     EK+ H  +FD+ VL  + GV++  +   T +A  L  +   
Sbjct: 439 INELIVIETLRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITMDTMVADYLLNSGGR 497

Query: 116 QHGLKDNLKELLGI-NIS-KAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167
            HGL D  +  L   N+S K    +      ++ +Q+       YA  DV     L    
Sbjct: 498 NHGLDDLAQRRLDHTNLSIKDLIGT--GKKQITMDQVPVDDVSPYACEDVDVPIRLAPTL 555

Query: 168 TEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
            ++L   G   L            AE++  G
Sbjct: 556 RDELNESGLDGLFDEVEMPLTEVLAEMEFNG 586


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Riemerella anatipestifer RA-GD]
          Length = 935

 Score = 77.7 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 21/192 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREK 77
           A+  DTET  L      L  +  S   G    + I   +  A             E   K
Sbjct: 364 AVCFDTETTSLDEMEAELIGISFSYKKGLAYYVPIPENRAEAQAIVERFRPFFEKESILK 423

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS-- 132
           I H  ++D  VL          +F T IA  L      +HG+    +  L    I +   
Sbjct: 424 IAHNLKYDYKVLLNYGIEVTGNLFDTMIAHYLLNPDG-RHGMDYLSEMYLNYKPIALETL 482

Query: 133 -----KAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCN 185
                K Q++      ++    Q QYAA D      L   F+ +L++    ++       
Sbjct: 483 IGKKGKGQKT----LREIDLPTQTQYAAEDADITFQLYEIFSPQLKKEEVEEVFYKIEMP 538

Query: 186 FLMDRAELDLLG 197
            +   A+++L G
Sbjct: 539 LVKVLAKMELTG 550


>gi|221124179|ref|XP_002154311.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 608

 Score = 77.7 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 22/171 (12%)

Query: 14  ECAARYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---LVGM 69
           EC    +  + +D E +         + ++QLS G  T  I RI     N      L  +
Sbjct: 104 ECFQENLHFVGLDCEWVSNEKSH---VALIQLSLG-TTCLIYRIPQLSINEEFPFQLKKL 159

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY-----------TNQHG 118
           L + K  K       D+  L ++ GV VR     +I ++    +               G
Sbjct: 160 LENPKILKFGVAIYEDVRRL-HSHGVAVRGFVDLRILAQRCLPFITTKNSEDENKYKGMG 218

Query: 119 LKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           L+    +LL +N+ K++  Q S+W A DLS EQ+ YAA D +    +    
Sbjct: 219 LQSLSYKLLNMNLDKSRNIQCSNWHATDLSKEQILYAAKDAIASLEVFYAL 269


>gi|221117975|ref|XP_002165683.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 608

 Score = 77.7 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 22/171 (12%)

Query: 14  ECAARYVDAIAVDTETLG-LMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---LVGM 69
           EC    +  + +D E +         + ++QLS G  T  I RI     N      L  +
Sbjct: 104 ECFQENLHFVGLDCEWVSNEKSH---VALIQLSLG-TTCLIYRIPQLSINEEFPFQLKKL 159

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY-----------TNQHG 118
           L + K  K       D+  L ++ GV VR     +I ++    +               G
Sbjct: 160 LENPKILKFGVAIYEDVRRL-HSHGVAVRGFVDLRILAQRCLPFITTKNSEDENKYKGMG 218

Query: 119 LKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           L+    +LL +N+ K++  Q S+W A DLS EQ+ YAA D +    +    
Sbjct: 219 LQSLSYKLLNMNLDKSRNIQCSNWHATDLSKEQILYAAKDAIASLEVFYAL 269


>gi|156095069|ref|XP_001613570.1| DNA binding protein [Plasmodium vivax SaI-1]
 gi|148802444|gb|EDL43843.1| DNA binding protein, putative [Plasmodium vivax]
          Length = 481

 Score = 77.7 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           LC++QLS       +  I   +   P  +  ++ DEK  K+ H  R D  +      V++
Sbjct: 140 LCLIQLSS-KELCFVFNINKLKGKIPMCVKEIMEDEKIRKVCHDIRNDQDMFLDQH-VQI 197

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           R  F   +     +++     L+  +K  L  N+ K  + S+W +DDL +EQ+ YAA+D 
Sbjct: 198 RNSFD--LYDFCMQSFLYPPSLQFLVKLFLKKNLEKQFRLSNWLSDDLREEQILYAAADA 255

Query: 158 VHLHALRLQFTE 169
                + +   +
Sbjct: 256 YASREVYMVLRD 267


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score = 77.7 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 19/192 (9%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKRE 76
             +++DTET    P    L  +  +        + + A  ++A NLV +      +E+  
Sbjct: 348 KILSLDTETTSTNPMEAELVGLSFAVEPKKAFYVPVPAKHEDAVNLVKIFKPLYENEEIV 407

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISK 133
           K+    ++D+ VL         P+F T IA  + +    +H +    +  L    I+I K
Sbjct: 408 KVGQNIKYDMEVLRNYGIELKGPMFDTMIAHYVLQPEL-RHNMDYMAEVYLNYQTIHIEK 466

Query: 134 ------AQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCN 185
                   Q    +  DLS   +  YA  D      L+     KL+  G +DL       
Sbjct: 467 LIGERGKNQK---NMRDLSPTDVYLYACEDADITLQLKNALEPKLKEAGVADLFYQMEMP 523

Query: 186 FLMDRAELDLLG 197
            +   AE+++ G
Sbjct: 524 LVNVLAEMEMNG 535


>gi|194878428|ref|XP_001974061.1| GG21519 [Drosophila erecta]
 gi|190657248|gb|EDV54461.1| GG21519 [Drosophila erecta]
          Length = 625

 Score = 77.7 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 52/205 (25%)

Query: 10  DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54
           D+P EC                 +    I +D+E +  +   ++LC++Q++ G     I 
Sbjct: 404 DLPDECLIIVDKAEQFDRMLYHLQQEYVIYLDSEWMQSVCGENQLCVLQIATGHNVYLID 463

Query: 55  RIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
            +A     + +       +  +    K+      D++VL  +      P+   ++  ++ 
Sbjct: 464 CLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSL-----PL---QLRLQMP 515

Query: 111 RTYTNQHG-------------------------LKDNLKELLGINISKAQQSSDWSADDL 145
             Y +                            L D     LG  ++K+ Q S+W+   L
Sbjct: 516 HHYLDLRSLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPL 575

Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170
             EQ+ YAA D   L  +      +
Sbjct: 576 RREQILYAAMDARCLLLIYNTLIAR 600


>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
 gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
          Length = 945

 Score = 77.7 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 18/189 (9%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI  HE            D IA+DTET  L     +L  +  +   G    + +A    +
Sbjct: 348 TILTHEALDKWIEQLTKADLIAIDTETTSLDYMTAKLVGISFAVEVGKAAYLPLAHDYLD 407

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           AP           L  +L D K +K+    ++DI++     G++++ V F T + S +  
Sbjct: 408 APEQLDFDEAIAKLKPLLEDPKLKKVGQNLKYDISIFAN-VGIKLQGVAFDTMLESYVFN 466

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165
           +  ++H + D   + LG      ++ +   A  L+  Q+       YAA D      L  
Sbjct: 467 SVASKHNMDDLALKYLGHKNISFEEIAGKGAKQLTFNQIDLETAAPYAAEDADITLRLHQ 526

Query: 166 QFTEKLQRL 174
               +L++ 
Sbjct: 527 HLWARLEKE 535


>gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000]
 gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000]
          Length = 982

 Score = 77.7 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 26/183 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------NAPN----- 65
           A     +A DTET  L      LC V L+   G    I I+  +K       AP      
Sbjct: 389 ATDKGLVAFDTETDALSSATAGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPADIEQI 448

Query: 66  --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    K+    ++DIAVL    G++V P+  T + S +     + H
Sbjct: 449 PLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVAPIEDTMLISYVLEAGLHGH 507

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKL 171
           G+ +  +  LG      +Q +      +S       E   YAA D      L      +L
Sbjct: 508 GMDELSELHLGHKPIPFKQVAGSGKGQISFKHVALPEATAYAAEDADVTLRLYHHLKPQL 567

Query: 172 QRL 174
            R 
Sbjct: 568 ARA 570


>gi|224072969|ref|XP_002190738.1| PREDICTED: similar to Protein AMBP [Taeniopygia guttata]
          Length = 831

 Score = 77.7 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 48/177 (27%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVGML-VDEKREKIFHYGRFDIA 87
            R+ ++QL+  D    +      +        +  P+ + ML  D    K+ +    D++
Sbjct: 173 PRVALLQLALKDEVFLLDLPQLLEQAETEGEKEKLPHFIQMLYSDATITKLGYGMSGDLS 232

Query: 88  VLFYTFGVRVRPVFCTK---------IA----------SRLTRTYTNQH----------- 117
            L  T       +  T+         +A          SR     + +H           
Sbjct: 233 SLAATC----STLKDTEKQMQGVVDLLAVDKQLQWGKDSRKVDGLSPEHSHEQRGVRQPE 288

Query: 118 -GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA----ASDVVHLHALRLQFTE 169
            GL   ++ +LG  + K +Q S+W    L +EQ+ YA    ASD   L  +  +  +
Sbjct: 289 KGLSLLVQHVLGKPLDKTEQLSNWEKRPLREEQILYAGLALASDAYCLLEIYERLCK 345


>gi|301781518|ref|XP_002926188.1| PREDICTED: LOW QUALITY PROTEIN: probable exonuclease mut-7 homolog
           [Ailuropoda melanoleuca]
          Length = 849

 Score = 77.7 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 44/198 (22%)

Query: 9   GDIP--AECAARYVDAIAVDTE-TLGLMPR-RDRLCIVQLSPGDGTVDII-----RIAAG 59
            D+    +   +    + VD E         R +  I+Q++       +      R A G
Sbjct: 388 EDLARHEDELLQPGQVVGVDLEWRPSFGTGGRPQASIMQVAVEGRVFLLDVRVLSRPAGG 447

Query: 60  QKNA--PNLV-GMLVDEKREKIFHYGRFDIAVLFYTFGVRV------------------- 97
           Q +     LV  +L D    K+ +    D+  L  +                        
Sbjct: 448 QVSQAFSRLVSQLLSDPSITKLGYGMAGDLRSLGASCPALAHVEKQLRGSLDLLQVHRQM 507

Query: 98  ----RPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
               +P         L R       GL   ++++LG  + K+QQ S+W    LS+ QL Y
Sbjct: 508 RAVDKP--------ALGRGEARGLRGLSLLVQQVLGKPLDKSQQLSNWDRRPLSEGQLVY 559

Query: 153 AASDVVHLHALRLQFTEK 170
           AA+D   L  +      +
Sbjct: 560 AAADAYCLLGVYQALCRE 577


>gi|316973270|gb|EFV56889.1| putative 3'-5' exonuclease [Trichinella spiralis]
          Length = 535

 Score = 77.7 bits (191), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 25/202 (12%)

Query: 9   GDIPAECAARYVDAIAVDTE--------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
            D+  +     V  + +D E          G       + +VQ +   G   ++R++   
Sbjct: 43  NDL--QLDIDKVPVLGLDCEWSADCSSNATGRN-----VSLVQFATAFGVCILVRLSQMN 95

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
               + V +L + K  K+      D+  L+   G+ VR  F       L         L+
Sbjct: 96  TPTSSFVTVLENSKVMKVGLGIEQDVKRLYLDHGIVVRGKFDV---RYLLDVDQRNISLQ 152

Query: 121 DNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ-FTEKLQRLGRS 177
             +K      + K      S+W A +L++ Q+QYA+SD  +     L+  + KL     +
Sbjct: 153 TLVKNCFDHVLVKLTKVACSNWDATELTEAQIQYASSDAQYSLDCFLKSLSNKLLDHSWT 212

Query: 178 DLATSCCNFLMDRAELDLLGWE 199
                 C+     A+  L  ++
Sbjct: 213 MW----CSCAQTAAQKALDDYD 230


>gi|308509326|ref|XP_003116846.1| CRE-CRN-3 protein [Caenorhabditis remanei]
 gi|308241760|gb|EFO85712.1| CRE-CRN-3 protein [Caenorhabditis remanei]
          Length = 488

 Score = 77.7 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +  L         + + K  Q +DW A  L +  + YA  D  +L        E+L + 
Sbjct: 7   PKFSLAYLAFRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQ 66

Query: 175 GRSDL--ATSCCNFLMDRA 191
            + DL    S CN L  R 
Sbjct: 67  DKKDLNVVYSECNDLCVRV 85


>gi|289743943|gb|ADD20719.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 514

 Score = 77.7 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 10/189 (5%)

Query: 21  DAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
             +  D E  T+G   RR  + ++QL+  +G   + R+        +L  +L D+   K+
Sbjct: 80  KVLGFDCEWITIG-RVRRP-VALLQLASPNGFCGLFRLCHMDHIPESLKNLLADKDIIKV 137

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--Q 136
                 D   L   +G+ V   F  +  + + R      GL+   + LL ++  K     
Sbjct: 138 GVDPAGDARKLRADYGIYVASTFDIRYLAVMIRC--KPLGLEKLSRSLLNVDFVKPWYIA 195

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE--LD 194
            S+W  D L D+Q++YAA D      +      +L+     +        +  + +  LD
Sbjct: 196 RSNWEFDKLDDDQVEYAAKDAFAGVEIFKHLANRLEPRNYWNFTYIDFIAIKSKIKYLLD 255

Query: 195 LLGWENVDI 203
           L   EN+ I
Sbjct: 256 LDFSENIPI 264


>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15]
 gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15]
          Length = 967

 Score = 77.7 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 26/183 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------NAPN----- 65
           A     +A DTET  L      LC V L+   G    I I+  +K       AP      
Sbjct: 374 ATDKGLVAFDTETDALSSATAGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPADIEQI 433

Query: 66  --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    K+    ++DIAVL    G++V P+  T + S +     + H
Sbjct: 434 PLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVAPIEDTMLISYVLEAGLHGH 492

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKL 171
           G+ +  +  LG      +Q +      +S       E   YAA D      L      +L
Sbjct: 493 GMDELSELHLGHKPIPFKQVAGSGKGQISFKHVALPEATAYAAEDADVTLRLYHHLKPQL 552

Query: 172 QRL 174
            R 
Sbjct: 553 ARA 555


>gi|220905226|ref|YP_002480538.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219869525|gb|ACL49860.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 214

 Score = 77.3 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 14/164 (8%)

Query: 12  PAECAARYVDAIAVDTETLGLMP-----RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
            A    R    +  DTET    P     RR+   ++QL+     V +I+++      P+L
Sbjct: 38  AALPLLREESILGFDTET---RPSFRKGRRNSPALIQLATA-RAVYLIQLS-WLPFGPHL 92

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY-TNQHGLKDNLKE 125
             +L +  + K     R D+  L          +        + R +     GL+     
Sbjct: 93  ADLLANPVQVKAGVGIRDDMRDLAKLHDFEPAGLVD---LGGVARAHKLPSQGLRTLAAN 149

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
             G  +SK  Q S+WS  +LS  Q+ YAA+D      + ++  E
Sbjct: 150 FFGWRVSKGSQCSNWSLPELSARQIAYAATDAWIGRLIFIRMCE 193


>gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
 gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
          Length = 1024

 Score = 77.3 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 66/206 (32%), Gaps = 32/206 (15%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA---- 58
           TI   +        A     +AVDTET  L   R  L  V L+   G    I ++     
Sbjct: 418 TITSLDRLDAWVAEAAEAGVLAVDTETNALDAHRADLVGVSLATAPGRAAYIPLSHRGSE 477

Query: 59  ---GQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105
              G+   PN          L  +L D    K+    ++D  VL    G+ VRP   T +
Sbjct: 478 DLFGEGLLPNQLPWEAVRARLKPLLEDPAVLKVGQNLKYDWLVLARH-GIEVRPYDDTML 536

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD----------WSADDLSDEQLQYAAS 155
            S +       HG+ +  +  LG         +D          +    L      YAA 
Sbjct: 537 ISYVLDAGKGSHGMDELARRHLGHQP---ITFADVTGTGRTKVTFDRVPLDKA-TAYAAE 592

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLAT 181
           D      L      +L    R+ +  
Sbjct: 593 DADVTLRLWRLMKPRLAAERRATVYE 618


>gi|145279204|ref|NP_060290.3| probable exonuclease mut-7 homolog [Homo sapiens]
 gi|308153580|sp|Q8N9H8|MUT7_HUMAN RecName: Full=Probable exonuclease mut-7 homolog; AltName:
           Full=Exonuclease 3'-5' domain-containing protein 3
 gi|220678451|emb|CAX12959.1| novel protein (FLJ20433) [Homo sapiens]
          Length = 876

 Score = 77.3 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61
                +    + VD E     +     R R  ++Q++       +  +A  Q        
Sbjct: 386 EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 443

Query: 62  -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117
             +  +  +L D    K+ +    D+  L  +           +I   +     ++    
Sbjct: 444 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 501

Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                          GL   ++++LG  + K QQ S+W    L +EQ+ YAA+D   L  
Sbjct: 502 ASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQVIYAAADAYCLLE 561

Query: 163 LRLQFTEKLQR 173
           +      +  R
Sbjct: 562 VHQALCREPAR 572


>gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
 gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
          Length = 896

 Score = 77.3 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 19/198 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------LVG 68
            +  D I++D ET  L P   ++  + ++  DG    I +     +           L  
Sbjct: 318 LKGSDVISIDLETSSLDPHEAKIVGISVAIKDGEGFYIPVNHESSDWQADEKQVLLRLKE 377

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L D   + +    +FD  +L    G+    P F T IA+ L    + +  L D   + L
Sbjct: 378 LLEDSGTKIVGQNLKFDYEILEKH-GIEPVVPHFDTMIAAYLLNPDSRRFNLDDLALKFL 436

Query: 128 GIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           G         ++K Q    +    + +   +Y+  D      L    ++KL      ++ 
Sbjct: 437 GYRTTSFSELMNKNQLKDQFEKVSVEEA-AKYSVEDADIALRLYRVLSKKLYESDLDNIF 495

Query: 181 TS-CCNFLMDRAELDLLG 197
                  +   AEL+L G
Sbjct: 496 HKIEMELIPVLAELELNG 513


>gi|302837201|ref|XP_002950160.1| 3'-5' exonuclease [Volvox carteri f. nagariensis]
 gi|300264633|gb|EFJ48828.1| 3'-5' exonuclease [Volvox carteri f. nagariensis]
          Length = 313

 Score = 77.3 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 23/130 (17%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK---IASR----LTRTYTNQHG 118
           L  +L      K+F+  R D   L++  GV +R V   +   +A R    + R      G
Sbjct: 132 LKEVLECPSVTKLFYDVRCDAEALYHQHGVSLRGVVDLQLSEVAYRRYGPVVRRVGYVIG 191

Query: 119 LKDNLKELLGINISKAQQSS----------------DWSADDLSDEQLQYAASDVVHLHA 162
           L   L+  L   + +  QS+                 W    LS EQ++YAA DV++LH 
Sbjct: 192 LTRALECYLAPELRERWQSTAVDKRLLHETFNRDLRYWDRRPLSQEQVRYAADDVLYLHH 251

Query: 163 LRLQFTEKLQ 172
           L  +FT  L 
Sbjct: 252 LHREFTAALA 261


>gi|322801849|gb|EFZ22421.1| hypothetical protein SINV_07950 [Solenopsis invicta]
          Length = 612

 Score = 77.3 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 11/154 (7%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +  D E +   P    + ++QL+  +G V + RI         L  +L  +   K+  
Sbjct: 99  GILGFDCEWVKEGP----VSLLQLATNNGVVALFRIGKIGYIPFKLKELLATKHILKVGV 154

Query: 81  YGRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQ 136
               D   L   +G RV       T +A  L     ++  L    ++ L I + K    +
Sbjct: 155 SSFEDGQKLVKDYGCRVNGTLDLRT-LADSL--NLPSRKSLAAMCEQYLNIEMDKLIEVR 211

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
             DW A  LSD+Q+ YAA D +    +  +  EK
Sbjct: 212 CGDWDASTLSDDQVAYAACDALASVIIYHKIMEK 245


>gi|291406465|ref|XP_002719587.1| PREDICTED: exonuclease 3'-5' domain containing 2 isoform 1
           [Oryctolagus cuniculus]
          Length = 643

 Score = 77.3 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 14/162 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E +    +   L ++Q++   G   +IR+      G+     L+ +L D
Sbjct: 121 LEDFPVLGIDCEWVNCEGKASPLSLLQMASTSGFCVLIRLPKLTYGGRVLPRTLLDILAD 180

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASR----LTRTYTNQHGLKDNLKELL 127
               K+      D + L   +G+ VR       +A R    L R   N   LK   + +L
Sbjct: 181 GTILKVGVGCSEDASKLLQDYGLAVRGCLDLRYLAVRQRNNLLR---NGLSLKSLAETVL 237

Query: 128 GINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              + K+ Q   S+W A++L+++Q+ YAA D     AL L  
Sbjct: 238 NFPLDKSLQLRCSNWDAENLTEDQVTYAARDAQVSVALFLHL 279


>gi|47210358|emb|CAF90237.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 624

 Score = 77.3 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 14/170 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVD 72
            R +  + +D E +    +   + ++Q++   G   ++R+    +  Q    +L  +L D
Sbjct: 115 LRLLPVLGLDCEWVSAKGKASSVSLLQMATYSGLCVLVRLQAFRSCQQPFPLSLAEVLRD 174

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-----QHGLKDNLKELL 127
            +  K+      D   L   +G+ +    CT     L     +        LK    +LL
Sbjct: 175 PRVFKVGVGCYEDGRRLTRDYGLSLS---CTVDLRYLALRQRDTKVNNGLSLKSLAADLL 231

Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            + + K+   + SDW AD LS EQ+ YAA D     AL L     L   G
Sbjct: 232 NVCLDKSLDVRCSDWEADQLSPEQVTYAARDAQVSVALFLSLLGILSEAG 281


>gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
 gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
          Length = 944

 Score = 77.3 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 74/206 (35%), Gaps = 39/206 (18%)

Query: 3   TIRVHEGDIPAECA----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-- 56
           T      D+PA  A    A     +A DTET  L      LC V L+   G    I +  
Sbjct: 333 TAYACVRDLPALDAWIAKAYARGIVAFDTETDALSSATAGLCGVSLAVAPGEACYIPLGH 392

Query: 57  ----------AAGQKNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
                     AA     P       L  +L D    K+    ++DIAVL    G+ V P+
Sbjct: 393 CEAEGLQLEAAADLTQIPLEQAIARLKPLLEDPSVLKVAQNAKYDIAVLSRY-GIEVGPI 451

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINIS-----------KAQQSSDWSADDLSDEQ 149
             T + S +     + HG+ +  K  LG++             KAQ+S  +    LS+  
Sbjct: 452 DDTMLISYVLEAGLHNHGMDELSK--LGLDHEPIAFKSVAGTGKAQKS--FKYVGLSEAT 507

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLG 175
             YAA D      L      +L   G
Sbjct: 508 C-YAAEDADVTLRLWEHLKPRLAHEG 532


>gi|119608789|gb|EAW88383.1| hypothetical protein FLJ20433, isoform CRA_c [Homo sapiens]
          Length = 876

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61
                +    + VD E     +     R R  ++Q++       +  +A  Q        
Sbjct: 386 EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 443

Query: 62  -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117
             +  +  +L D    K+ +    D+  L  +           +I   +     ++    
Sbjct: 444 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 501

Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                          GL   ++++LG  + K QQ S+W    L +EQ+ YAA+D   L  
Sbjct: 502 ASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLE 561

Query: 163 LRLQFTEKLQR 173
           +      +  R
Sbjct: 562 VHQALCREPAR 572


>gi|326508692|dbj|BAJ95868.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 562

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 25/175 (14%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDR------LCIVQLSPGDGTVDIIRIAAGQK 61
           +G + A         I VD E     P  ++      + I+Q++  D    I  +    +
Sbjct: 363 KGLLSATSYIEACKIIGVDCE---WKPNYEKGSRPNKVAIIQIAS-DKKAFIFDLIKLYE 418

Query: 62  NAPN-----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTR 111
           + P         ++      K+ +  + D+  L  ++G  +       +   +   +L +
Sbjct: 419 DDPKALDCCFRRIMCSSNILKLGYNLQCDLHQLTQSYGELLCFQSYEMLLDIQ---KLFK 475

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
             T   GL    K++LG  ++K +++SDW    LS  Q +YAA D   L  +   
Sbjct: 476 ETTG--GLSGLSKKILGAGLNKTRRNSDWEQRPLSQNQKEYAALDAAVLVHIFHH 528


>gi|291406467|ref|XP_002719588.1| PREDICTED: exonuclease 3'-5' domain containing 2 isoform 2
           [Oryctolagus cuniculus]
          Length = 620

 Score = 77.0 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 14/162 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E +    +   L ++Q++   G   +IR+      G+     L+ +L D
Sbjct: 98  LEDFPVLGIDCEWVNCEGKASPLSLLQMASTSGFCVLIRLPKLTYGGRVLPRTLLDILAD 157

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASR----LTRTYTNQHGLKDNLKELL 127
               K+      D + L   +G+ VR       +A R    L R   N   LK   + +L
Sbjct: 158 GTILKVGVGCSEDASKLLQDYGLAVRGCLDLRYLAVRQRNNLLR---NGLSLKSLAETVL 214

Query: 128 GINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              + K+ Q   S+W A++L+++Q+ YAA D     AL L  
Sbjct: 215 NFPLDKSLQLRCSNWDAENLTEDQVTYAARDAQVSVALFLHL 256


>gi|302846316|ref|XP_002954695.1| hypothetical protein VOLCADRAFT_106481 [Volvox carteri f.
           nagariensis]
 gi|300260114|gb|EFJ44336.1| hypothetical protein VOLCADRAFT_106481 [Volvox carteri f.
           nagariensis]
          Length = 1044

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 29/121 (23%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV------------------------- 51
            R    I +DTE   L+    R+C++QLS  D T                          
Sbjct: 217 LRQERQIGLDTEASPLLCYHGRVCLIQLSVWDDTASPCDGGDDGGSSGCSSGSGGSGGGG 276

Query: 52  ----DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                +  +A        L G++ D +  K+ H G  D+  L   F V +  VF T+ AS
Sbjct: 277 GHVWLVDALALRGHVGAALGGLMADPRVVKVLHGGGNDVVWLQRDFRVYLVNVFDTEKAS 336

Query: 108 R 108
           +
Sbjct: 337 Q 337



 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 119 LKDNLKELLGINI--SKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           L   L  ++G+++   KA  Q +DW    L    L+YAA+DV +L  L      +L  LG
Sbjct: 408 LASLLSRIVGLDVGAEKAAGQRADWRRRPLPPALLRYAAADVAYLPYLADVLRRELAALG 467


>gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199]
 gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199]
          Length = 943

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 64/192 (33%), Gaps = 33/192 (17%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------AAGQK 61
            AA+ +  +A DTET  L   R  L  V L+   G    I +             A   +
Sbjct: 340 VAAQDLGTVAFDTETTSLDCMRADLVGVSLAVAPGKACYIPLRHVGRQAQGDLLGAGPAE 399

Query: 62  NAP----------NLVGMLVDEKREKIFHYGRFDIAVLFY--TFGVRVRPVFCTKIASRL 109
            AP           L  +L +    KI H  ++D  VL      G+ V P+  T   S +
Sbjct: 400 EAPKQIPFDTAMARLKDLLENPAVLKIAHNAKYDALVLSRPKNGGITVAPIDDTMCLSYV 459

Query: 110 TRTYTNQHGLKDNLKELLGI-NIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                + HGL +     LG  NI       K +    ++   +      YAA D      
Sbjct: 460 LEGGLHGHGLDELATLHLGHTNIKFEEVCGKGKTQIGFAEAPIDKA-CAYAAEDADVTFR 518

Query: 163 LRLQFTEKLQRL 174
           L      +L   
Sbjct: 519 LHALLKPRLVPE 530


>gi|195401270|ref|XP_002059237.1| GJ16284 [Drosophila virilis]
 gi|194156111|gb|EDW71295.1| GJ16284 [Drosophila virilis]
          Length = 621

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 52/202 (25%)

Query: 10  DIPAECAA---------------RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54
           D+P EC                 +    I +D+E +  +  +++LC++Q++       I 
Sbjct: 399 DLPDECLLIVDTAATFERMLQHLQREQIIYMDSEWMQNVCAQNQLCLLQIATTHNVYLID 458

Query: 55  RIAAGQKNAPNLVG-----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
            +A+ Q             +  +    K+      D++VL  +      P+   ++   +
Sbjct: 459 CLASRQALHEEHWRALGANVFNNPNILKVGFSMLNDLSVLQRSL-----PL---QLRLHM 510

Query: 110 TRTYTN----------QHG--------------LKDNLKELLGINISKAQQSSDWSADDL 145
              Y +          +HG              L D     LG  ++KA Q S+W+   L
Sbjct: 511 PHHYLDLRNVWLELKKRHGVELPYGNVNRAGDALTDLSMLCLGKKLNKANQCSNWANRPL 570

Query: 146 SDEQLQYAASDVVHLHALRLQF 167
             EQ+ YAA D   L  +    
Sbjct: 571 RREQILYAAIDARCLLLIYDCL 592


>gi|119608788|gb|EAW88382.1| hypothetical protein FLJ20433, isoform CRA_b [Homo sapiens]
          Length = 390

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61
                +    + VD E     +     R R  ++Q++       +  +A  Q        
Sbjct: 66  EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 123

Query: 62  -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117
             +  +  +L D    K+ +    D+  L  +           +I   +     ++    
Sbjct: 124 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 181

Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                          GL   ++++LG  + K QQ S+W    L +EQ+ YAA+D   L  
Sbjct: 182 ASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLE 241

Query: 163 LRLQFTEKLQR 173
           +      +  R
Sbjct: 242 VHQALCREPAR 252


>gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894]
 gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894]
          Length = 927

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +    +AVDTET  L      L  +  +   G    I +A    +AP+          L 
Sbjct: 346 KNAPVVAVDTETDSLDNLTANLVGISFATEPGLAAYIPVAHDYLDAPDQLSRDRVLELLK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L DE   K+    +FD  +L    G+ +R + F T + S +  + + +H +       
Sbjct: 406 PLLEDESLVKVGQNLKFDRGILQNY-GIELRGIAFDTMLESYILDSVSGRHDMDSLSSRW 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           L       +Q +    + L+  Q+       YAA D      L L+   KLQ+
Sbjct: 465 LKHTTITFEQIAGKGKNQLTFNQIDLEQAGRYAAEDADVTLQLHLKMWPKLQQ 517


>gi|330998346|ref|ZP_08322170.1| 3'-5' exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329568452|gb|EGG50257.1| 3'-5' exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 206

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 14/160 (8%)

Query: 22  AIAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            + VDTET      R    +++ ++Q+S  D          G  ++  +  +L DE   K
Sbjct: 46  VLGVDTET--RPSFRKGCVNKVALLQVSTDDTCFLFRLNYIGVTDS--VKRLLQDENVLK 101

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINISKAQQ 136
           +    R D A L        R     +      R +      L+     + G  ISK Q+
Sbjct: 102 VGLSLRDDFASLHKRGEFEPRAFLDLQ---DYVRAFGIEDMSLQKLYANIFGQKISKGQR 158

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            ++W AD L++ Q  YAA+D      L  +      R  +
Sbjct: 159 LTNWEADVLTEGQKLYAATDAWACIRLYRELEAL--RENK 196


>gi|22759879|dbj|BAC10986.1| HBE269 [Homo sapiens]
          Length = 514

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61
                +    + VD E     +     R R  ++Q++       +  +A  Q        
Sbjct: 66  EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 123

Query: 62  -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117
             +  +  +L D    K+ +    D+  L  +           +I   +     ++    
Sbjct: 124 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 181

Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                          GL   ++++LG  + K QQ S+W    L +EQ+ YAA+D   L  
Sbjct: 182 ASVPAPAVDRARELRGLTLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLE 241

Query: 163 LRLQFTEKLQR 173
           +      +  R
Sbjct: 242 VHQALCREPAR 252


>gi|255080460|ref|XP_002503810.1| predicted protein [Micromonas sp. RCC299]
 gi|226519077|gb|ACO65068.1| predicted protein [Micromonas sp. RCC299]
          Length = 503

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 74/237 (31%), Gaps = 72/237 (30%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-----------QK 61
           A CAA   D +AVD E + +  R   + ++Q++ GD        A G             
Sbjct: 243 ARCAA--CDVVAVDCEGVNM-SRVGAITLLQVAAGDSAYLFDVQAMGRACFEMVSDASVT 299

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA--------------- 106
           N  NL  +L D K  K+    R D   LF+  GV +  VF  ++A               
Sbjct: 300 NGRNLKSVLEDPKVVKLMFDCRVDSDALFHQHGVSLTNVFDVQLADVAARRANHHAVSLL 359

Query: 107 -------------------SRLTRTYTNQ-------------HGLKDNLKELLGINISKA 134
                              + L     ++               +    + L      K 
Sbjct: 360 SGMPKCAGRWLPKGPNQAEAALAAQGPDRAPIRSDSDAPPDAASVARVTEHLKRK--VKE 417

Query: 135 QQSSD-------WSADDLSDEQLQYAASDVVHLHALRLQFTEK--LQRLGRSDLATS 182
           Q +S+       W+   L+++  +YAA D   L  +         L    R+ +   
Sbjct: 418 QYASNLGGDGELWAKRPLAEDVRRYAALDAWLLKEIYAAMEHANVLDEDWRARVVKE 474


>gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
 gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
          Length = 920

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76
           + +++DTET      R  L  +  S  +     + + A ++ A         +  ++   
Sbjct: 348 EFVSIDTETTSTDAIRAELVGLSFSVEENKAFYVPLPANREEALKYVRIFKPLYENDNIL 407

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           KI    ++D  VL          +F T IA  L +   + H +    + LLG   I+I  
Sbjct: 408 KIGQNIKYDYEVLNNYGVTLQGKMFDTMIAHYLIQPELH-HNMDYMAETLLGYRTIHIEE 466

Query: 133 ------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q+    +  DLS  +  +YAA D      L+     +L+ LG  +L  +   
Sbjct: 467 LIGPKGKKQK----NMRDLSPTDICEYAAEDADITLRLKHLLEPRLKELGLEELFWNIEM 522

Query: 185 NFLMDRAELDLLG 197
             +   A+++L G
Sbjct: 523 PLVRVLADMELNG 535


>gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032]
 gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032]
          Length = 966

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +    +AVDTET  L      L  +  +   G    I +A    +AP+          L 
Sbjct: 385 KTAPVVAVDTETDSLDNLTANLVGISFATEPGLAAYIPVAHDYLDAPDQLPRDRVLELLK 444

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L DE   K+    +FD  +L    G+ +R + F T + S +  + + +H +       
Sbjct: 445 PLLEDESLVKVGQNLKFDRGILQNY-GIELRGIVFDTMLESYILDSVSGRHDMDSLSSRW 503

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           L       +Q +    + L+  Q+       YAA D      L L+   KLQ+
Sbjct: 504 LKHTTITFEQIAGKGKNQLTFNQIDLEQAGRYAAEDADVTLQLHLKMWPKLQQ 556


>gi|21428342|gb|AAM49831.1| GM01690p [Drosophila melanogaster]
          Length = 625

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 52/205 (25%)

Query: 10  DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54
           D+P EC                 +    I +D+E +  +   ++LC++Q++ G     I 
Sbjct: 404 DLPDECLIIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCVLQIATGHNVYLID 463

Query: 55  RIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
            +A     + +       +  +    K+      D++VL  +      P+   ++  ++ 
Sbjct: 464 CLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSL-----PL---QLRLQMP 515

Query: 111 RTYTN-----------QHG--------------LKDNLKELLGINISKAQQSSDWSADDL 145
             Y +           + G              L D     LG  ++K+ Q S+W+   L
Sbjct: 516 HHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPL 575

Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170
             EQ+ YAA D   L  +     E+
Sbjct: 576 RREQILYAAIDARCLMLIYNTLIER 600


>gi|20129683|ref|NP_610094.1| CG9247 [Drosophila melanogaster]
 gi|75027007|sp|Q9VIF1|MUT7_DROME RecName: Full=Probable exonuclease mut-7 homolog; AltName:
           Full=Exonuclease 3'-5' domain-containing protein 3
           homolog
 gi|7298759|gb|AAF53970.1| CG9247 [Drosophila melanogaster]
          Length = 625

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 52/205 (25%)

Query: 10  DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54
           D+P EC                 +    I +D+E +  +   ++LC++Q++ G     I 
Sbjct: 404 DLPDECLIIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCVLQIATGHNVYLID 463

Query: 55  RIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
            +A     + +       +  +    K+      D++VL  +      P+   ++  ++ 
Sbjct: 464 CLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSL-----PL---QLRLQMP 515

Query: 111 RTYTN-----------QHG--------------LKDNLKELLGINISKAQQSSDWSADDL 145
             Y +           + G              L D     LG  ++K+ Q S+W+   L
Sbjct: 516 HHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPL 575

Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170
             EQ+ YAA D   L  +     E+
Sbjct: 576 RREQILYAAIDARCLMLIYNTLIER 600


>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
 gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
          Length = 944

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 15/192 (7%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEK 74
               +  DTET  L      L  +  S   G    I ++  +                E 
Sbjct: 370 QQKVVCFDTETTSLNELEAELVGMSFSYKKGLAYYIPLSEDRAEVLQTLEIFRPFFEKED 429

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
             K+ H  +FD  VL          +F T IA  L      +HG+    +  L    ++I
Sbjct: 430 LLKVAHNLKFDYKVLKQYDITVKGAMFDTMIAHYLLNPDG-RHGMDYLSEVYLNYKPVSI 488

Query: 132 S-----KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCN 185
                 K ++  ++   DL   Q  YAA D      L   F  +L++    +L       
Sbjct: 489 ETIIGKKGKKQGNFRDADL-RTQTDYAAEDADVTFQLYELFAPQLKKENLEELFYNIEMP 547

Query: 186 FLMDRAELDLLG 197
            +   A+++L G
Sbjct: 548 LMEVLAKMELSG 559


>gi|242218433|ref|XP_002475007.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725829|gb|EED79800.1| predicted protein [Postia placenta Mad-698-R]
          Length = 483

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 31/187 (16%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIA 57
           +     D   E AA     +  D E   +  +R       R  +VQLS     + +    
Sbjct: 159 VYTRHEDEANELAAALTGPLGFDME-WRIFIQRGAPIIERRTAVVQLSDARMILVV---- 213

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS-------RLT 110
                      ++      K     R D   LF  +G+    +   ++ +         +
Sbjct: 214 ---------QELIESPTVVKTGANIRNDGEKLFRDYGIVAANL--VELGALAHRADPAFS 262

Query: 111 RTYTNQ-HGLKDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             Y      L   ++     ++ K + +  +W A  LS EQ+ YAA+D      +  +  
Sbjct: 263 TIYHRSIVSLARMVEHYTRRSLDKGKVRIGNWEAAPLSQEQITYAANDAHCALVVYKRLI 322

Query: 169 EKLQRLG 175
           E     G
Sbjct: 323 EIATEHG 329


>gi|167535101|ref|XP_001749225.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772378|gb|EDQ86031.1| predicted protein [Monosiga brevicollis MX1]
          Length = 411

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 36/195 (18%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIA-AGQKNAPN 65
            D+ A+ A +    I+ D E  G +   D  RL I+QL+       I   A  G  +   
Sbjct: 216 ADVKADAAMQR--PISFDCEWAGTVSLYDDTRLGIMQLATKSAVYVIDACAEPGVFDFCA 273

Query: 66  L------------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT--KIASRLT- 110
                         G++ D  + K       D        G RV  V  T  ++   +  
Sbjct: 274 FATRLLQLTPIIGFGVMSDRDQLK---SAGVD----GELVGQRVLDVMDTVAQLQQTIPV 326

Query: 111 --------RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                   +  + +  L D ++ L+G++++K +Q +DW    L  E L YAA D   L  
Sbjct: 327 PPTYPDKWQGSSPRISLADLVQGLVGVSLAKHEQLADWERRPLRPESLHYAALDAYVLLQ 386

Query: 163 LRLQFTEKLQRLGRS 177
           +    + K+Q  G+ 
Sbjct: 387 VLDILS-KVQATGQW 400


>gi|281345331|gb|EFB20915.1| hypothetical protein PANDA_015792 [Ailuropoda melanoleuca]
          Length = 723

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 44/198 (22%)

Query: 9   GDIP--AECAARYVDAIAVDTE-TLGLMPR-RDRLCIVQLSPGDGTVDII-----RIAAG 59
            D+    +   +    + VD E         R +  I+Q++       +      R A G
Sbjct: 349 EDLARHEDELLQPGQVVGVDLEWRPSFGTGGRPQASIMQVAVEGRVFLLDVRVLSRPAGG 408

Query: 60  QKNA--PNLV-GMLVDEKREKIFHYGRFDIAVLFYTFGVRV------------------- 97
           Q +     LV  +L D    K+ +    D+  L  +                        
Sbjct: 409 QVSQAFSRLVSQLLSDPSITKLGYGMAGDLRSLGASCPALAHVEKQLRGSLDLLQVHRQM 468

Query: 98  ----RPVFCTKIASRLTRTYTNQH-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
               +P         L R       GL   ++++LG  + K+QQ S+W    LS+ QL Y
Sbjct: 469 RAVDKP--------ALGRGEARGLRGLSLLVQQVLGKPLDKSQQLSNWDRRPLSEGQLVY 520

Query: 153 AASDVVHLHALRLQFTEK 170
           AA+D   L  +      +
Sbjct: 521 AAADAYCLLGVYQALCRE 538


>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
 gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
          Length = 932

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76
             +++DTET    P R  L  +  S  +     + + A +  A         +  + +  
Sbjct: 360 SVLSLDTETTSTDPIRAELVGMSFSYAENQAFYVPVPADRSEAQKIVDRFRPVFENREIM 419

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           K+    ++D+ VL         P+F T +A  + +    +H +    +  L    I+I  
Sbjct: 420 KVGQNIKYDMLVLANYGVQLQGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLNYQTIHIEE 478

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q     +  DL    + +YA  D      L+ +  ++L       L      
Sbjct: 479 LIGPKGKNQG----NMRDLPPASVYEYACEDADVTLKLKNKLEKELDENNVRKLFEEIEM 534

Query: 185 NFLMDRAELDLLG 197
             +   A ++  G
Sbjct: 535 PLIPVLAYMERNG 547


>gi|218263130|ref|ZP_03477349.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222915|gb|EEC95565.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
           DSM 18315]
          Length = 193

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 58/157 (36%), Gaps = 20/157 (12%)

Query: 22  AIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           A+  DTE             ++ ++Q+S  D    + R+         L   L +EK +K
Sbjct: 47  AVGFDTETRPSFKKGQRY--KISLMQIST-DEACFLFRLNRIDIPK-VLEEFLANEKVQK 102

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINIS 132
           I    R D   +     ++              + Y  Q G     L+     L    IS
Sbjct: 103 IGLSLRDDFGAMQKRKDIQPANFLD-------LQNYVGQFGIEDASLQKIYAILFNKKIS 155

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           K Q+ S+W AD LSD Q +YAA D      +  Q  +
Sbjct: 156 KGQRLSNWEADVLSDAQKKYAALDAWACLKIYNQLKQ 192


>gi|118099131|ref|XP_415556.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 865

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 41/174 (23%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG-MLVDEKREKIFHYGRFDIA 87
            R+ ++QL+  D    +      +        +  P+ +  +  D    K+ +    D++
Sbjct: 405 PRVSLLQLAVRDEVFLLDLPRLLEQAEVKGEKEKLPHFIQRLYSDATITKLGYGMSGDLS 464

Query: 88  VL------FYTFGVRVRPVFCTKIASRLTRTYTNQH------------------------ 117
            L            + + V       +L +  +                           
Sbjct: 465 SLAATCSTLKGMDKQSQSVVDLLTIDKLLQKSSTDWKKGGLKVDVLSPEQSCEDGGLRQP 524

Query: 118 --GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
             GL   ++ +LG  + K +Q S+W    L +EQ+ YAASD   L  +  +  +
Sbjct: 525 EKGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCLLEVYEKLCK 578


>gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6]
 gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6]
          Length = 951

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 32/191 (16%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            D+    AA      A DTE  GL P   +LC + L+   G+   +          +L  
Sbjct: 353 ADLTQALAA--APGFAFDTEASGLRPFASQLCGISLALSPGSAVYVPCGHSSGAQLSLAE 410

Query: 69  M-------LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120
           +         D  + K  H  +FDI +L    G+ V+ + F T IA+ L      + GLK
Sbjct: 411 VVAALGPFFADPNKAKYAHNAKFDIEMLL-GVGIEVQGLAFDTMIAAALL---GKRAGLK 466

Query: 121 DN-------------LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           D              +++L+G   +K    +      +      YAA+D      L    
Sbjct: 467 DLAFYELQLPDPMTPIEDLIGRG-TKQISFA---QVPIERA-TPYAAADADMTLRLVHAL 521

Query: 168 TEKLQRLGRSD 178
             +L    +  
Sbjct: 522 EPQLATTPKLH 532


>gi|255007833|ref|ZP_05279959.1| putative 3'-5' exonuclease [Bacteroides fragilis 3_1_12]
 gi|313145540|ref|ZP_07807733.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134307|gb|EFR51667.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 215

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 13  AECAARYVDAIAVDTETLGLMP--RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A    +    + +D+ET          ++ ++Q+S  D    + R+       P ++ +L
Sbjct: 36  AVAYLQSQAILGIDSETRPSFTKGHSHKVALLQISS-DECCFLFRLNMTGLTQP-IIELL 93

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD-NLKELLGI 129
            + +  K+    + D  +L              + A    + Y    G++D +L+++ GI
Sbjct: 94  ENPEVIKVGLSLKDDFMMLHKRA---PFN----QQACIELQEYVRPFGIQDKSLQKIYGI 146

Query: 130 ----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
                ISK+Q+ S+W AD L+D Q QYAA+D      +     + L+R G  +LA     
Sbjct: 147 LFREKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYH-LLQDLKRTGNYELAPEEET 205

Query: 186 FLMDRAELD 194
               +A  D
Sbjct: 206 VETVKAGSD 214


>gi|21753501|dbj|BAC04356.1| unnamed protein product [Homo sapiens]
          Length = 758

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 34/191 (17%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61
                +    + VD E     +     R R  ++Q++       +  +A  Q        
Sbjct: 386 EGALLQCHQVVGVDVEWTPVFVAG--GRPRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQ 443

Query: 62  -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--- 117
             +  +  +L D    K+ +    D+  L  +           +I   +     ++    
Sbjct: 444 AFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAH--VEKQILGGMDLLLVHRQMRV 501

Query: 118 ---------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                          GL   ++++LG  + K QQ S+W    L +EQ+ YAA+D   L  
Sbjct: 502 ASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLE 561

Query: 163 LRLQFTEKLQR 173
           +      +  R
Sbjct: 562 VHQALCREPAR 572


>gi|319427358|gb|ADV55432.1| 3'-5' exonuclease [Shewanella putrefaciens 200]
          Length = 301

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 22  AIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            I  DTET       +R     L ++Q++  D T  + + A   +    L  +L DE   
Sbjct: 115 VIGFDTET---RASFERGVQHPLSLIQIATHD-TCYLFQHALLDEQLGLLKPVLEDENIL 170

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK-- 133
           K+    R D   L   +G+ V P      + ++L      + G +  +  LL   I K  
Sbjct: 171 KVGVGLRSDGQALTREWGINVTPRLDLNWVLAQL--GAGKEMGTRQLVATLLQKRIDKPK 228

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               S+W    L+  Q+ YAA D +       +  +KL+
Sbjct: 229 KVTLSNWQQVPLTSTQIVYAALDALAAQHCFSELIDKLK 267


>gi|294883488|ref|XP_002770959.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|294886213|ref|XP_002771613.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239874097|gb|EER02775.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239875319|gb|EER03429.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 221

 Score = 76.6 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 46/209 (22%)

Query: 24  AVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKNA--------PNLVGM 69
           AVD    GL   RD      +LC+   S    +V ++ I     +A         +L  +
Sbjct: 2   AVD--FEGLNLSRDGAMSLAQLCL---SSDPRSVYVVDITRLGFHAFHATTHTGTSLKSI 56

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS---RLTRTYTNQ--HGL-KDNL 123
           + D + EK+F+  R D+  L+Y F V  + VF  ++A    R  R  T +   GL K  +
Sbjct: 57  MEDSRIEKVFYDPRNDVDALYYQFNVAPQNVFDLQLAEVALRRARGLTVRYVIGLFKCLI 116

Query: 124 K--ELLGINISKAQ------------------QSSDWSADDLSDEQLQYAASDVVHLHAL 163
              EL      K                        ++   L    + YA+ DV +L  L
Sbjct: 117 AQPELFTQPAMKDFARRINDAGKALYEPTHGGSFKVFTQRPLHTSIIVYASHDVRYLLPL 176

Query: 164 RLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           +  FT++L+  G  DL    C    +RA+
Sbjct: 177 KDLFTKRLREAG-GDLYDRVCKVSTERAQ 204


>gi|302846314|ref|XP_002954694.1| hypothetical protein VOLCADRAFT_106479 [Volvox carteri f.
           nagariensis]
 gi|300260113|gb|EFJ44335.1| hypothetical protein VOLCADRAFT_106479 [Volvox carteri f.
           nagariensis]
          Length = 756

 Score = 76.2 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 29/121 (23%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV------------------------- 51
            R    I +DTE   L+    R+C++QLS  D T                          
Sbjct: 217 LRQERQIGLDTEASPLLCYHGRVCLIQLSVWDDTASPCDGGDDGGSSGCSSGSGGSGGGG 276

Query: 52  ----DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                +  +A        L G++ D +  K+ H G  D+  L   F V +  VF T+ AS
Sbjct: 277 GHVWLVDALALRGHVGAALGGLMADPRVVKVLHGGGNDVVWLQRDFRVYLVNVFDTEKAS 336

Query: 108 R 108
           +
Sbjct: 337 Q 337



 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 119 LKDNLKELLGINI--SKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           L   L  ++G+++   KA  Q +DW    L    L+YAA+DV +L  L      +L  LG
Sbjct: 408 LASLLSRIVGLDVGAEKAAGQRADWRRRPLPPALLRYAAADVAYLPYLADVLRRELAALG 467

Query: 176 RSDLA 180
            +  A
Sbjct: 468 PTRWA 472


>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
 gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
          Length = 917

 Score = 76.2 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 20/191 (10%)

Query: 2   TTIRVHEG-DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           TTI  HE  D+  +      D IA+DTET  L     +L  +  +   G    + +    
Sbjct: 319 TTIYTHEELDLWID-KLTNADLIAIDTETTSLNYMEAKLVGISFAIEAGKAAYLPLGHDY 377

Query: 61  KNAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
            +AP           L  +L + + +K+    ++DI++     G++++ + F T + S +
Sbjct: 378 LDAPKQLDQAEALAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIAFDTMLESYV 436

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHAL 163
             +   +H + D   + LG      ++ +      L+  Q+       YAA D      L
Sbjct: 437 FNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQIDLEIAAPYAAEDADITLRL 496

Query: 164 RLQFTEKLQRL 174
                 +L++ 
Sbjct: 497 HQHLWPRLEKE 507


>gi|322788034|gb|EFZ13875.1| hypothetical protein SINV_15885 [Solenopsis invicta]
          Length = 880

 Score = 76.2 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 65/221 (29%), Gaps = 62/221 (28%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKI-- 78
           I+ D E + L   + +L +VQ+    G   +  +        A  L  +L      K+  
Sbjct: 417 ISFDCEGINLGV-KGQLTLVQIGTMSGQAYVFDLVTCPNLIQAGGLQKLLEHPHVIKVKM 475

Query: 79  -----------------------------------FHYGRFDIAVLFYTFGVRVRPVFCT 103
                                               H  R D   L+  F + +  VF T
Sbjct: 476 FYIVYNKQKYIRYIIISQRYANTSTYVKSCLFLQVIHDCRNDSVNLYNQFKITLTNVFDT 535

Query: 104 KIASRLTRTY--------TNQHGLKDNLKEL------LGINIS----KAQQSSDWSADDL 145
           + A  + +               L             L   +     K Q+   WS   +
Sbjct: 536 QAAHAVLQFQETGKPVYKVKNVNLNTLCDHYGAPCNPLKEQLKNIYRKDQRY--WSRRPM 593

Query: 146 SDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDLATSCCN 185
           + + L YA+SDV+ L   +    + +L +    DL    C 
Sbjct: 594 TRDMLIYASSDVLSLVPQVYNAMS-RLIKPEVQDLFAELCE 633


>gi|332025467|gb|EGI65632.1| Exonuclease 3'-5' domain-containing protein 2 [Acromyrmex
           echinatior]
          Length = 606

 Score = 76.2 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 12/163 (7%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +  D E +   P    + ++QL+  +G + + RI       P L  +L  +   K+  
Sbjct: 95  GVLGFDCEWVKEGP----VSLLQLATYNGLIALFRIGKIGYIPPKLKELLASKHILKVGI 150

Query: 81  YGRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQ 136
               D   +   +G RV       T +A        ++  L     E L I + K    +
Sbjct: 151 SSFEDGHKIVKDYGCRVNGTLDLRT-LAENF--NLPSRKSLAAMCLEYLNIEMDKIIEVR 207

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             DW A  L+DEQ+ YAA D +    +  +  +K ++   +  
Sbjct: 208 CGDWDASTLTDEQVAYAACDALASVIVYHKIMQK-EKEKYTLW 249


>gi|326930167|ref|XP_003211223.1| PREDICTED: probable exonuclease mut-7 homolog [Meleagris gallopavo]
          Length = 916

 Score = 76.2 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 41/174 (23%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVGML-VDEKREKIFHYGRFDIA 87
            R+ ++QL+  D    +      +        +  P+++ ML  D    K+ +    D++
Sbjct: 405 PRVSLLQLAVRDEVFLLDLPQLLEQAEVKGEKEKLPHIIQMLYSDATITKLGYGMSGDLS 464

Query: 88  VL------FYTFGVRVRPVFCTKIASRLT--------------------------RTYTN 115
            L            + + V       +L                                
Sbjct: 465 SLAATCSTLKGMDKQSQSVVDLLTIDKLLQKSSIDWKKGSLKVDALSPEQSCEDEGLRQP 524

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           + GL   ++ +LG  + K +Q S+W    L +EQ+ YAASD   L  +  +  +
Sbjct: 525 EKGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCLLEVYEKLCK 578


>gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 896

 Score = 76.2 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 17/193 (8%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--------NLVGMLVD 72
              A+D ET  L P   ++  V +S  +G+   I IA               NL  +L D
Sbjct: 323 PIFAIDLETSSLDPHCAKIVGVSISIDEGSGYYIPIAHESDGWQADRDYVLKNLKKLLED 382

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---- 128
              + I    +FD +VL       V P F T +A+ L      +  L +   + LG    
Sbjct: 383 RSTKIIGQNLKFDYSVLAVNGIHPVVPDFDTMLAAYLLSPDAKRFNLDELAMKFLGYKTI 442

Query: 129 --INISKAQQSS-DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
              ++ K  Q   D++   L +   +Y+  D      L     +K+      ++      
Sbjct: 443 KFEDLMKKNQLGDDFTKVPLEEA-ARYSVEDADISLRLSSVLRKKIYEQELEEIFRKVEL 501

Query: 185 NFLMDRAELDLLG 197
             +   A+L+L G
Sbjct: 502 ALIPVLADLELNG 514


>gi|320168640|gb|EFW45539.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 385

 Score = 76.2 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 8/165 (4%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
                +   A+  D E     +     R    ++QL+  +G   +  +   Q   P L  
Sbjct: 199 DGADGQVAPALGFDIEWFAPFIRGQKARP-TALLQLAVENGPCYLFHLIQMQGIPPALQE 257

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELL 127
           +L D +  K+    + D+  L   + ++V       ++A+        +  L+  +++ L
Sbjct: 258 LLADSRIAKVGVGIKNDVTRLVRDYSLKVNGAVDLEELAAVRVVPLRTRWSLQALVQKTL 317

Query: 128 GINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
              + K+   +  +W    LS E  +YAA+D        L     
Sbjct: 318 NCLLDKSSELRLGNWEEAPLSWEMQEYAANDAHASLQTYLALVAM 362


>gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645]
 gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645]
          Length = 880

 Score = 76.2 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 74/204 (36%), Gaps = 18/204 (8%)

Query: 11  IPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN------- 62
           + A  A    V  ++ DTET    PR   L  +  S   G    I I + + +       
Sbjct: 286 LDALVAKLADVKRLSFDTETTSTNPRWADLVGISFSWDQGEGVYIPIRSPEGDVKLDESL 345

Query: 63  -APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLK 120
               L  +L +   EK+    ++D+ VL    GV VR   F T +A  L       HGL 
Sbjct: 346 VLEKLRPILENSAIEKVGQNLKYDLVVL-RGVGVNVRGASFDTMVAHYLLEAGARSHGLD 404

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           +     L     K  +      + +  +Q+       YAA D      L    +E+++  
Sbjct: 405 ELSLRYLQHETVKISELIGTGKNQIRMDQVPVDKVGYYAAEDADIPLRLDPILSERIEAE 464

Query: 175 GRSDLATS-CCNFLMDRAELDLLG 197
           G  DL T      +    E++  G
Sbjct: 465 GLGDLLTDVELPLIDVLVEMEFNG 488


>gi|115943126|ref|XP_783820.2| PREDICTED: similar to Vexonuclease 3-5 domain-like 1
           [Strongylocentrotus purpuratus]
 gi|115973892|ref|XP_001185100.1| PREDICTED: similar to Vexonuclease 3-5 domain-like 1
           [Strongylocentrotus purpuratus]
          Length = 819

 Score = 76.2 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 22/157 (14%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF--DIAVLFYTFGV 95
           +L +V +   +       +A         + +L      K+ H  RF  D+  L++ +G+
Sbjct: 193 KLSLVLVLCDEQVYMFDVLAVPSLFTRKFIDILQATNITKVIHDCRFVSDL--LYHHYGI 250

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLK-------ELLGINIS------KAQQS----- 137
            +  VF T++   L +          N+        E L I+I       +  Q      
Sbjct: 251 ELNSVFDTQVGDILIKRRQYMGDFPRNVSGTTQCILEYLEISIHDIALHLENTQRIEEDE 310

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           S W    L    ++ A  D V+L  LR   TE+L   
Sbjct: 311 SSWFQRPLPKVNIRCALLDTVYLLRLREAITEQLMAE 347


>gi|333029171|ref|ZP_08457232.1| 3'-5' exonuclease [Bacteroides coprosuis DSM 18011]
 gi|332739768|gb|EGJ70250.1| 3'-5' exonuclease [Bacteroides coprosuis DSM 18011]
          Length = 211

 Score = 76.2 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 11/157 (7%)

Query: 23  IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + +D+E     +       ++ ++Q+S  D    + R+       P L+ +L +   +KI
Sbjct: 46  LGIDSETRPAFVKGKSY--KVALLQIST-DNICFLFRLNKLG-LVPELIELLENPNIKKI 101

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
               R D  +L      +       +    +         L+     L    ISKAQ+ S
Sbjct: 102 GLSLRDDFMMLRKRASFKQENCIDLQ--EYVKHFGIKDKSLQKIYAILFKEKISKAQRLS 159

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +W A +L+D Q +YAA+D      +     E+L++ G
Sbjct: 160 NWEAVELTDAQQRYAATDAWSCLRIYNFL-EELKQSG 195


>gi|321470528|gb|EFX81504.1| hypothetical protein DAPPUDRAFT_303477 [Daphnia pulex]
          Length = 812

 Score = 76.2 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 33/200 (16%)

Query: 21  DAIAVDTETL------GLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLVGMLVD 72
             +++D E +      G +     L ++ L    G + I  +       +   L  +++ 
Sbjct: 362 KVVSLDLEGVNVGGNNGEVT----LAVIGL--PSGVIYIFDLITCPAIMSQGMLANLIIS 415

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLK 124
           ++  K+ H  + D A L   + V++  VF T+ A  + +               L    +
Sbjct: 416 KEIVKVCHDCKNDSAALNLGWNVKLENVFDTQAAHAVVQLQETGRAVHKVKTTSLNAMCE 475

Query: 125 EL---------LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRL 174
                      L   I K  Q   W+   L+ + + YAA DV+ L   L       ++  
Sbjct: 476 NYDLPTNPFKELVKTIYKRDQRF-WARRPLTRDMILYAAYDVMPLVPHLYDLLNNTVKPE 534

Query: 175 GRSDLATSCCNFLMDRAELD 194
            R  L   C   L+   + D
Sbjct: 535 FRPLLEELCAENLLALLQPD 554


>gi|145630437|ref|ZP_01786218.1| peptidyl-tRNA hydrolase [Haemophilus influenzae R3021]
 gi|144984172|gb|EDJ91609.1| peptidyl-tRNA hydrolase [Haemophilus influenzae R3021]
          Length = 90

 Score = 76.2 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 16 AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           A+   A+A+DTE + +     +L ++QL  G+    I  +A    +    + +L + K 
Sbjct: 26 LAQMKSAVALDTEFMRVSTYFPKLGLIQLYDGELVSLIDPLA--ITDFSPFIALLANPKV 83

Query: 76 EK 77
           K
Sbjct: 84 LK 85


>gi|312068949|ref|XP_003137453.1| hypothetical protein LOAG_01867 [Loa loa]
 gi|307767377|gb|EFO26611.1| hypothetical protein LOAG_01867 [Loa loa]
          Length = 911

 Score = 76.2 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 46/209 (22%)

Query: 18  RYVDAIAVDTE----TLGLMPRRDRLCIVQLSPG--DGTVDII---RIAAGQKNAPNLVG 68
              D I +DTE     +      +R+ + Q+        VD+I    +   ++       
Sbjct: 411 EEADLIGIDTEWKPLFMCT---SERVALFQICVRRCSYLVDVITLEDVLTKEQWTQFFKA 467

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVR-----VRPVFC---------TKIASRLTRTYT 114
           +  D    K+      D+ VL  +F        ++ V C         T   + L   ++
Sbjct: 468 LFSDSPAIKLGFDFLNDLRVLHASFPYLQPLEEMKNVICVLKLVKNLLTSNPAFLDFGHS 527

Query: 115 NQHGLK--------------------DNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
               L                     D  + +LG  + K +Q  +W+   L  EQ++YAA
Sbjct: 528 ANLSLSSRNENLLDAVSDETVHFRLTDLCQMVLGEALDKTEQIGNWAMRPLRREQMKYAA 587

Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            D   L  L  +   + +R    D    C
Sbjct: 588 MDGYCLLDLYDKLKIRAEREYNMDWTKHC 616


>gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
 gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
          Length = 971

 Score = 75.8 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 79/230 (34%), Gaps = 42/230 (18%)

Query: 6   VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--- 60
           V   +      AR V+A  +  DTET  L      LC V L+ G      I +       
Sbjct: 358 VQTEEALDRWIARAVEAGSVGFDTETSSLSATHAGLCGVSLAVGPNEACYIPLTHEHEPQ 417

Query: 61  -----------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
                                  K    L  +L +    K+    ++D+AV+    G+RV
Sbjct: 418 AGEGGLFGVPGEAREPIQQLDKAKALAKLKVLLENPSVLKVLQNAKYDLAVMARR-GIRV 476

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS---------KAQQSSDWSADDLSDE 148
            P   T + S +     + HG+ +  +  LG +           K+Q+S  +    L   
Sbjct: 477 APYDDTMLISYVLEGGLHGHGMDELARLHLGHDPVPFKSVAGTGKSQKS--FRHVALKPA 534

Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD-RAELDLLG 197
             QYAA D      L      +L R G S +  +    L    AE++  G
Sbjct: 535 -TQYAAEDADVTLRLWRLLKPRLAREGLSTVYETLERPLPAVLAEMETAG 583


>gi|329956986|ref|ZP_08297554.1| 3'-5' exonuclease [Bacteroides clarus YIT 12056]
 gi|328523743|gb|EGF50835.1| 3'-5' exonuclease [Bacteroides clarus YIT 12056]
          Length = 210

 Score = 75.8 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 21/180 (11%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + +D+E             ++ ++Q+S  +    + R+       P ++ 
Sbjct: 36  AVAYLKQCSILGIDSETRPSFTKGQSH--KVALLQISSEEHCF-LFRLNLTGLTLP-IIM 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L +    K+    R D  +L              + A    + Y    G     L+   
Sbjct: 92  LLENPGVTKVGLSLRDDFMMLHKRAPFE-------QRACIELQEYVRTFGIQDKSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             L    ISK+Q+ S+W A+ L+  Q QYAA+D      +  +  E L+R G  ++A   
Sbjct: 145 AILFKEKISKSQRLSNWEAEVLTPSQQQYAATDAWACLNIYNRLQE-LKRTGDFEMAAEE 203


>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
 gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
          Length = 949

 Score = 75.8 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 62/193 (32%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76
            A+A DTET  L      L  +  S   G    I ++  +  A             E   
Sbjct: 377 KAVAFDTETTTLNEMDAELVGLSFSYRKGLAYYIPLSEDRSEAIQTLEIFREFFEKEDVS 436

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------GLKDN-LKEL 126
           K+ H  +FD  +L          +F T IA  L                   K   L+ L
Sbjct: 437 KVAHNLKFDYKILQQYGFSLKGLLFDTMIAHYLLNPDGKHVIDYLSEIYLNYKPVALESL 496

Query: 127 LGINISKAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCC 184
           +G                L+ +EQ  YAA D      L   F  +L++    DL      
Sbjct: 497 IGKKGKNQLTF-----RSLTVEEQTNYAAEDADITWQLYEVFAPQLKKENLEDLFYKVEM 551

Query: 185 NFLMDRAELDLLG 197
             L   A+++L G
Sbjct: 552 PLLRVLAKMELEG 564


>gi|167555226|ref|NP_001107878.1| exonuclease 3'-5' domain-containing protein 2 [Danio rerio]
 gi|166796362|gb|AAI59254.1| Zgc:175195 protein [Danio rerio]
          Length = 617

 Score = 75.8 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 29/193 (15%)

Query: 21  DAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK--NAPNLVGMLVDE 73
             + +D E      + +  R   + ++QLS   G   ++R+ A Q      +L+ +L D+
Sbjct: 104 PVLGLDCEWVKRVRVSVKGRVSAVSLLQLSSFTGRCVLVRLLAFQNAQLPKSLIVLLRDQ 163

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCT----KIASRLTRT--YTNQHGLKDNLKELL 127
           +  K+      D   L    G+ +    CT     +A R ++    TN   LK   ++LL
Sbjct: 164 RVLKVGVGCYEDGKRLAQDHGLTLS---CTVDLRYLALRRSKQAVLTNGLSLKSLAEDLL 220

Query: 128 GINISKA--QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK-----LQRLGRSDLA 180
            + + K+   + SDW A++LS EQ+ YAA D     AL            L   G  +  
Sbjct: 221 NVTLDKSVELRCSDWEAEELSPEQITYAARDAQISIALFFHLLGMNTERHLPAEG--EAV 278

Query: 181 ----TSCCNFLMD 189
               ++CC  L+D
Sbjct: 279 FLHLSACCQGLVD 291


>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
 gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
          Length = 951

 Score = 75.8 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 73/208 (35%), Gaps = 34/208 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQKNAPNL------ 66
           A      A D ET GL P  D   +V     L  G G    ++  A +            
Sbjct: 369 AEAQGFAAFDCETTGLNPLYD--SLVGFSLSLKAGTGIYVPLKAPAPELGEQPFAVMPLA 426

Query: 67  --VGMLV----DEKREKIFHYGRFDIAVLFYTFGVRVR---PVFCTKIASRLTRTYTNQH 117
               +L     +++   + H G+FD  VL  T GV  R    +F T IA+ L        
Sbjct: 427 AAKKLLARLWNNKELTLVLHNGKFDYQVL-RTAGVFTRAGCRLFDTMIAAWLLEPDNLSF 485

Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           GL++  +  LG+        + K    +   A  L      YAA D      L   +   
Sbjct: 486 GLENLTEAQLGLQGLDYKDVVPKGCTFA---AVSLPQA-TAYAAEDADFTLQLYHVYKPA 541

Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLG 197
           L++   + L  +     +   A+++  G
Sbjct: 542 LEQANLTTLFETLEMPLMPLLADMEAQG 569


>gi|301763301|ref|XP_002917070.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           [Ailuropoda melanoleuca]
 gi|281349384|gb|EFB24968.1| hypothetical protein PANDA_005241 [Ailuropoda melanoleuca]
          Length = 622

 Score = 75.8 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 22/166 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E +    +   L ++Q++   G   ++R+      G+     L+ MLVD
Sbjct: 100 LEDCPVLGIDCEWVNSEGKASPLSLLQVASPSGFCVLVRLPKLICGGKTLPKTLLDMLVD 159

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG---------LKDNL 123
               K+      D + L   +G+ V+            R    + G         LK   
Sbjct: 160 GTVFKVGVGCSEDASRLLRDYGLVVKGCLD-------LRYLAVRQGNNLLCNGLSLKSLA 212

Query: 124 KELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + +L   + K+   + S+W A++L+++Q+ YAA D     AL L  
Sbjct: 213 ETVLNFPLDKSLLLRCSNWDAENLTEDQVIYAARDAQISVALFLHL 258


>gi|113969320|ref|YP_733113.1| 3'-5' exonuclease [Shewanella sp. MR-4]
 gi|113884004|gb|ABI38056.1| 3'-5' exonuclease [Shewanella sp. MR-4]
          Length = 299

 Score = 75.8 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 6/156 (3%)

Query: 21  DAIAVDTET-LGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
             +  DTET     P  +  L +VQL+  D T  + + A   +    L  +L +E+  K+
Sbjct: 117 SVLGFDTETRASFEPGVQHPLSLVQLATSD-TCYLFQRAVLGERLAELKPLLENERILKV 175

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQ 136
               R D   L   + ++V P      A         + G +  +  LL   I K     
Sbjct: 176 GIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGA-GKEMGTRQLVAALLHKRIDKPKKIT 234

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            S+W    LS  Q+QYAA D +  +    Q  +KLQ
Sbjct: 235 LSNWQQVPLSQAQIQYAALDTLAANLCFWQLIDKLQ 270


>gi|325282020|ref|YP_004254562.1| 3'-5' exonuclease [Odoribacter splanchnicus DSM 20712]
 gi|324313829|gb|ADY34382.1| 3'-5' exonuclease [Odoribacter splanchnicus DSM 20712]
          Length = 203

 Score = 75.8 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 23  IAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
           +  DTET      R         ++ ++QL+  +  V + R+       P LV +L   +
Sbjct: 48  LGFDTET------RPSFRKGEIYKVSLLQLAVPE-RVFLFRLNKCG-FQPALVRLLASPR 99

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINISK 133
             KI    R D   L              +        +          +  + G+ ISK
Sbjct: 100 IIKIGVGIRDDNRNLRKLADFTPASFVDLQ---EYAGYFGIEDKSFSKLMAIIFGVKISK 156

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            Q++S+W A  L++ Q++YAA+D      +  +     +  
Sbjct: 157 RQRTSNWEAPALTEAQIRYAATDAWGALKMYQRLAAFAEEE 197


>gi|224009215|ref|XP_002293566.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970966|gb|EED89302.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 291

 Score = 75.4 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 28/177 (15%)

Query: 23  IAVDTETLGLMPRRDRLC---IVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKREK 77
           IA D E + L     RL    IV +      V +I     +  K    +  +       K
Sbjct: 53  IAFDCEGVNL----SRLGSVEIVSICFSSSEVYLIDFGKEKCPKIVEAVKELFECSTLTK 108

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL---KDN--LKELLGINI- 131
           I H  R D   L++  G+++  V  T         + +  G    K+        GI + 
Sbjct: 109 IIHDCRMDFDALYHNHGIKLVNVHDT-------SAFHDFIGYEKGKNLNDTLSYYGIRVN 161

Query: 132 ---SKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
               K+   S+   W+A  L+ + + +A+SDV  L  L  +   ++    +S     
Sbjct: 162 TERDKSVYKSNPNFWAARPLTKKMIDWASSDVDKLFQLAEKQLGRISAAQKSSAVEK 218


>gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score = 75.4 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 75/205 (36%), Gaps = 19/205 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     AVDTET  L  R  R+  V  +   G    I I      AP           L
Sbjct: 345 LKAAPRFAVDTETTSLDYRLARIVGVSFALQAGEAFYIPIGHDYMGAPEQLDAQFVLDIL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    KI  + ++D  V            F T +AS +      +HG+ D  +  
Sbjct: 405 KPILENPAIGKIGQHMKYDAHVFNNHGISLAGWAFDTMLASYVLNPTATRHGMDDLAQYY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSD-- 178
           L    +  +Q +   A  L+  Q++      YAA D      L   F+++L ++ R +  
Sbjct: 465 LNYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWRLYEHFSKELAKIPRLERL 524

Query: 179 LATSCCNFLMDRAELDLLGWENVDI 203
           L  +         E++  G   +DI
Sbjct: 525 LLDAEMPAAQVLYEMENNGI-RLDI 548


>gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01]
 gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01]
          Length = 682

 Score = 75.4 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 30/193 (15%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV-DEKREK 77
               + VD ET GL P   R  ++ L+   G V +  +            +   +E    
Sbjct: 146 RQPVLGVDLETTGLDPHTSRPRLLSLAMP-GAVVVFDLFGVP--LEVFYPLFSREEGPLL 202

Query: 78  IFHY----------GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           + H                  ++   G R   ++ T +A ++         LKD      
Sbjct: 203 VGHNLKFDLLFLLKAG-----VWRASGKR---LWDTGLAHQVLHAQARMPALKDLA---- 250

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186
              + K  Q+SDW    LS EQ+ YA  D      L  +  E+  R  R +         
Sbjct: 251 -PGLDKTLQTSDWGG-PLSSEQVAYAGLDAAVPLVLYREQRER-ARTLRLEKVLEVERRA 307

Query: 187 LMDRAELDLLGWE 199
           L   A ++L G  
Sbjct: 308 LPAVAWMELKGVP 320


>gi|195475951|ref|XP_002090246.1| GE12998 [Drosophila yakuba]
 gi|194176347|gb|EDW89958.1| GE12998 [Drosophila yakuba]
          Length = 625

 Score = 75.4 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 36/197 (18%)

Query: 10  DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54
           D+P EC                 +    I +D+E +  +   ++LC++Q++ G     I 
Sbjct: 404 DLPDECLIIVDKAEQFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCVLQIATGHNVYLID 463

Query: 55  RIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFG-----VRVRPVFC--- 102
            +A       +       +  +    K+      D++VL  +                  
Sbjct: 464 CLARESLCEEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSLPLHLRLQMPHHYLDLRN 523

Query: 103 -------TKIASRLTRTYTNQHG--LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
                   +    L     N+ G  L D     LG  ++K+ Q S+W+   L  EQ+ YA
Sbjct: 524 LWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYA 583

Query: 154 ASDVVHLHALRLQFTEK 170
           A D   L  +      +
Sbjct: 584 AMDARCLLLIYNTLIAR 600


>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
 gi|89517759|gb|EAS20415.1| DNA  polymerase I [Flavobacteria bacterium BBFL7]
          Length = 946

 Score = 75.4 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 70/198 (35%), Gaps = 27/198 (13%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEK 74
              ++  DTET GL P    L  +  S   G    + I   ++ A      L        
Sbjct: 371 QQSSVCFDTETTGLDPLTAELVGIAFSWEKGKGFYLPIPEDREAAQVIVDQLKPFFESAS 430

Query: 75  REKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130
            EK+    ++DI VL    GV V+ P+F T +A  L      +H +    +  L      
Sbjct: 431 IEKVGQNLKYDIKVLDKY-GVDVKGPMFDTMLAHYLINP-DMRHNMDVLAETYLNYTPQS 488

Query: 131 ----ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
               I K         + LS      ++Q +YA  D      L+  FT +L   G   L 
Sbjct: 489 IVELIGKK------GKNQLSMRDVDLEKQKEYAVEDADITLQLKEHFTPELASAGTDKLF 542

Query: 181 TS-CCNFLMDRAELDLLG 197
                  L   A +++ G
Sbjct: 543 KDIEMPLLDVLAAMEIEG 560


>gi|195580608|ref|XP_002080127.1| GD21649 [Drosophila simulans]
 gi|194192136|gb|EDX05712.1| GD21649 [Drosophila simulans]
          Length = 422

 Score = 75.4 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 52/205 (25%)

Query: 10  DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54
           D+P EC                 +    I +D+E +  +   ++LC++Q++ G     I 
Sbjct: 201 DLPDECLIIVDKADQFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCVLQIATGHNVYLID 260

Query: 55  RIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
            +A     + +       +  +    K+      D++VL  +      P+   ++  ++ 
Sbjct: 261 CLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSL-----PL---QLRLQMP 312

Query: 111 RTYTN-----------QHG--------------LKDNLKELLGINISKAQQSSDWSADDL 145
             Y +           + G              L D     LG  ++K+ Q S+W+   L
Sbjct: 313 HHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPL 372

Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170
             EQ+ YAA D   L  +      +
Sbjct: 373 RREQILYAAIDARCLLLIYNTLIAR 397


>gi|291280801|ref|YP_003497635.1| hypothetical protein DEFDS_P259 [Deferribacter desulfuricans SSM1]
 gi|290755503|dbj|BAI81879.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 420

 Score = 75.4 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 15/122 (12%)

Query: 66  LVGMLVDEKREKIFHYG-RFDIAVLFYTFGVRVRP------------VFCTKIASR--LT 110
           L+ + + +  + +FH G  FDI VL+  + +  +             +  T    +  L 
Sbjct: 135 LLDLFIKQNNQLVFHNGISFDIRVLYDFYSIFHKDFSDLLSYIKDNLLIDTMKIYKDKLQ 194

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
                +  LK  +K+ +  ++ K  Q  DW+   +    L YAA DV+ L  +  +  E+
Sbjct: 195 EPGEKKSNLKYLVKKYINYDLDKTYQKYDWTIRPIDKNALVYAAFDVIFLEKIYDKMMEE 254

Query: 171 LQ 172
           ++
Sbjct: 255 IK 256


>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
 gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
          Length = 948

 Score = 75.4 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 73/205 (35%), Gaps = 27/205 (13%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKREK 77
           ++  DTET GL P    L  +  S   G    +     +  A  L+ +L     ++  EK
Sbjct: 376 SVCFDTETTGLNPLTAELVGIAFSWETGKGFYVPFPEDKNEAQELIEVLRPFFENDNIEK 435

Query: 78  IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------ 130
           I    ++DI VL     V V+  +F T +A  L      +H +    +  L         
Sbjct: 436 IGQNLKYDIKVLAKY-NVEVKGKLFDTMLAHYLINP-DMRHNMDVLAETYLNYTPISITE 493

Query: 131 -ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
            I K         + LS      D+Q +YA  D      L+  F ++L       L    
Sbjct: 494 LIGKK------GKNQLSMREVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFNDI 547

Query: 183 CCNFLMDRAELDLLGWENVDIFSHS 207
               L   A ++L G      F +S
Sbjct: 548 ELPLLRVLAAMELEGINLDKDFLNS 572


>gi|195051841|ref|XP_001993181.1| GH13217 [Drosophila grimshawi]
 gi|193900240|gb|EDV99106.1| GH13217 [Drosophila grimshawi]
          Length = 632

 Score = 75.4 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 52/203 (25%)

Query: 10  DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54
           D+P +C                 +    I +D E +  +  +++LC++Q++       I 
Sbjct: 410 DLPDKCLIIVDTAPIFEHMLQHLQREQIIYMDAEWMQNVCVQNQLCLLQIATTHNVYLID 469

Query: 55  RIAAGQKNAPNLVGM----LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
            +A    +  +   +      +    K+      D++VL  +      P+   ++   + 
Sbjct: 470 CLANQALHEDHWRALGATVFNNVNILKVGFSMLNDLSVLQRSL-----PL---QLRLHMP 521

Query: 111 RTYTN-----------QHG--------------LKDNLKELLGINISKAQQSSDWSADDL 145
             Y +           +HG              L D     LG  ++KA Q S+W+   L
Sbjct: 522 HHYLDLRTVWLELKKQRHGIELPFGNLNRAGDALTDLTMLCLGKKLNKANQCSNWANRPL 581

Query: 146 SDEQLQYAASDVVHLHALRLQFT 168
             EQ+ YAA D   L  +    T
Sbjct: 582 RREQILYAAIDARCLLHIYDCLT 604


>gi|291224294|ref|XP_002732140.1| PREDICTED: Probable exonuclease mut-7 homolog [Saccoglossus
           kowalevskii]
          Length = 1166

 Score = 75.4 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 41/201 (20%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLC------IVQLSPGDGTVDIIRIAAGQ-----K 61
           AE   +    I +D+E     P    +C      ++QL+  D    +  +   Q      
Sbjct: 459 AEILFKPGAIIGIDSE---WRPAFGPICEPVKVSLLQLASIDAVFILDMMTLSQCVDVDI 515

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQ 116
               ++ +       K+ +    DI +LF ++ +      ++ +    + +R  +  + +
Sbjct: 516 LKDFMLKLFTTHDILKLGYGIDGDIKMLFKSYPLMRNAADLQRIVDLSVLTRNIQKESPE 575

Query: 117 H----------------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
                                  GL + ++  LG  ++K ++ SDW    L   QL YAA
Sbjct: 576 LLQNSSTTEDASGEGSGKKGKEKGLSELVQRCLGKPLNKMERLSDWERRPLRQAQLIYAA 635

Query: 155 SDVVHLHALRLQFTEKLQRLG 175
            D   L  +      K++  G
Sbjct: 636 LDAYCLLEVYDHIRNKVKESG 656


>gi|307204165|gb|EFN83006.1| Exonuclease 3'-5' domain-like-containing protein 2 [Harpegnathos
           saltator]
          Length = 643

 Score = 75.4 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 19/158 (12%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +  D E +   P    + ++QL+  +G   + RI         L  +L +++  K+  
Sbjct: 114 GVLGFDCEWVNEGP----VSLLQLATFNGVCALFRIGKIGYIPDKLKELLSNKRILKVGV 169

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH------GLKDNLKELLGINISK- 133
               D   +    G +V             RT            L     E LG+ + K 
Sbjct: 170 ASFEDGQKILKDHGCQVSGTLD-------IRTLAESIQLPSLKSLAAMSLEYLGLEMDKI 222

Query: 134 -AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
              +  DW A  L+DEQ+ YAA D +    +  +  + 
Sbjct: 223 IELRCGDWEASTLTDEQVTYAACDAIASIFIYQKVKQM 260


>gi|120597845|ref|YP_962419.1| 3'-5' exonuclease [Shewanella sp. W3-18-1]
 gi|120557938|gb|ABM23865.1| 3'-5' exonuclease [Shewanella sp. W3-18-1]
          Length = 301

 Score = 75.4 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 22  AIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            I  DTET       +R     L ++Q++  D T  + + A   +    L  +L DE   
Sbjct: 115 VIGFDTET---RASFERGVQHPLSLIQIATHD-TCYLFQHALLAEQLGLLKPVLEDENIL 170

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK-- 133
           K+    R D   L   +G+ V P      + ++L      + G +  +  LL   I K  
Sbjct: 171 KVGVGLRSDGQALTREWGINVTPRLDLNWVLAQL--GAGKEMGTRQLVATLLQKRIDKPK 228

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               S+W    L+  Q+ YAA D +       +  +KL+
Sbjct: 229 KVTLSNWQQVPLTSTQIVYAALDALAAQHCFSELIDKLK 267


>gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83]
 gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83]
          Length = 926

 Score = 75.4 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 20/196 (10%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEK 74
                + DTET      R  +  + L    G    I +      G++    L  +  D  
Sbjct: 352 ATPCFSFDTETDSKDALRANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRPLFADTA 411

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG----- 128
             K+    ++DI VL    G+ VR  +F T IA  L      +H + +  + LLG     
Sbjct: 412 IGKVGQNMKYDIQVLSRY-GIEVRGQLFDTMIAHYLL-FPDLRHNMDEMAETLLGYCTVH 469

Query: 129 ----INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
               +   K +         L      YA  D      L  +    L   G + L  S  
Sbjct: 470 YSDLVGSDKQEVHI--RQVPL-QNLADYAMEDADITWQLYERLNAMLSEAGMTSLFESIE 526

Query: 184 CNFLMDRAELDLLGWE 199
              +   A ++  G +
Sbjct: 527 MPLVPVLANMERSGVK 542


>gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
 gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
          Length = 893

 Score = 75.4 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 75/208 (36%), Gaps = 22/208 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------AAGQKNAPN----LV 67
           R    +A+DTET G  P R  L  V     +G    + +         Q + P+    L 
Sbjct: 312 RSAGLLAIDTETTGTDPMRADLVGVSFCLKEGKAFYLPVGHHYLGVPAQVSWPDARDVLK 371

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L D+   K+    ++D  VL    GV +  + F T IAS +      QH L    +  
Sbjct: 372 DVLEDDAVLKVGQNIKYDACVLKRH-GVSLSGISFDTMIASYVINPGLRQHNLDALAQRY 430

Query: 127 LGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           L   +        K + +  +    L     +Y+  D      LR    ++++      L
Sbjct: 431 LNHKMISYKDVVGKGKNARGFEEVSLEKA-CEYSCEDADMTFRLRRILAKQIRDEKNEAL 489

Query: 180 ATS-CCNFLMDRAELDLLGWE-NVDIFS 205
                   L    ++++ G + +  +F 
Sbjct: 490 FNELEMKLLPVLLDMEMTGIKIDTALFE 517


>gi|298481453|ref|ZP_06999645.1| 3'-5' exonuclease domain protein [Bacteroides sp. D22]
 gi|295086916|emb|CBK68439.1| Ribonuclease D [Bacteroides xylanisolvens XB1A]
 gi|298272317|gb|EFI13886.1| 3'-5' exonuclease domain protein [Bacteroides sp. D22]
          Length = 222

 Score = 75.0 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 21/178 (11%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    I +D+E             ++ ++Q+S  +    + R+       P LV 
Sbjct: 36  AVAYLQSRSVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVD 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L +    K+    + D  +L         P   T+ +    + Y  Q G     L+   
Sbjct: 92  LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             L    ISK+Q+ S+W AD LSD Q QYAA+D      +     ++L++ G  ++A 
Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGDWEIAA 201


>gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
          Length = 920

 Score = 75.0 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 76/194 (39%), Gaps = 21/194 (10%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKR 75
              +++DTET      +  L  +  +  +     + I + ++ A   V +      +E  
Sbjct: 347 SKVLSLDTETTSTDTMQAELVGLSFAIEEKKAFYVAIPSDRREAEKFVNIFRPLYENENI 406

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D  VL    G+ ++  +F T IA  L +   + H +    + LLG   ++I
Sbjct: 407 LKVGQNIKYDYEVLAQY-GIDIKGKMFDTMIAHYLIQPELH-HNMDYMAETLLGYKTVHI 464

Query: 132 S-----KA-QQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
                 K   Q    +  DLS   + +YA+ D      L      KL+ +   DL     
Sbjct: 465 DELIGAKGKHQK---NMRDLSPTDIYEYASEDADITLQLYKVLEPKLKEVNAEDLFWKIE 521

Query: 184 CNFLMDRAELDLLG 197
              +   A++++ G
Sbjct: 522 MPLVRVLADMEMNG 535


>gi|29349740|ref|NP_813243.1| hypothetical protein BT_4332 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569894|ref|ZP_04847303.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384013|ref|ZP_06993574.1| 3'-5' exonuclease domain protein [Bacteroides sp. 1_1_14]
 gi|29341650|gb|AAO79437.1| 3'-5' exonuclease-like protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840275|gb|EES68357.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263617|gb|EFI06480.1| 3'-5' exonuclease domain protein [Bacteroides sp. 1_1_14]
          Length = 216

 Score = 75.0 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 26/197 (13%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + +D+E             ++ ++Q+S  D    + R+       P LV 
Sbjct: 36  AVAYLQSQPILGIDSETRPSFTKGQSH--KVALLQISS-DECCFLFRLNMTGLTQP-LVD 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L +    K+    + D  +L         P   T+ +    + Y  Q G     L+   
Sbjct: 92  LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             L    ISK+Q+ S+W AD LSD Q QYAA+D      +     ++L+R G  ++    
Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKRTGNYEV---- 199

Query: 184 CNFLMDRAELDLLGWEN 200
              L    E+D     N
Sbjct: 200 -ESLPVEEEVDANAPAN 215


>gi|195328901|ref|XP_002031150.1| GM25821 [Drosophila sechellia]
 gi|194120093|gb|EDW42136.1| GM25821 [Drosophila sechellia]
          Length = 532

 Score = 75.0 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           +F T  A++       +  L   LK  L +++ K+ Q +DW    L  + + YA  D   
Sbjct: 1   MFDTHRAAKALNM--ARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHF 58

Query: 160 LHALRLQFTEKLQRL 174
           L  +  + T  L + 
Sbjct: 59  LIYVYERMTNDLLQQ 73


>gi|311748079|ref|ZP_07721864.1| 3'- 5' exonuclease domain protein [Algoriphagus sp. PR1]
 gi|126574723|gb|EAZ79104.1| 3'- 5' exonuclease domain protein [Algoriphagus sp. PR1]
          Length = 201

 Score = 75.0 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRR--DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
            AE  ++    I  DTET     R   +++ ++QLS       + R+    +   +L  +
Sbjct: 35  AAEFLSKQ-SIIGFDTETKPAFRRGVINQVALLQLSTA-TQAFLFRLNEIGEFPDSLRNI 92

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L  E   K+      DI  L            F   +   L +   +  G+++    +L 
Sbjct: 93  LEKESIVKVGAAVHDDIKGLAKLTDSFFPLSFFD--LNDELKKVGFHNVGVRNLCAMVLK 150

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           + ISK++Q S+W A+ L+++Q +YAA+D      +  +  ++
Sbjct: 151 MRISKSEQVSNWEAEVLTEKQQRYAATDAWACLEVFKKLKKE 192


>gi|237715608|ref|ZP_04546089.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408617|ref|ZP_06085163.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646256|ref|ZP_06723909.1| 3'-5' exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294805802|ref|ZP_06764678.1| 3'-5' exonuclease [Bacteroides xylanisolvens SD CC 1b]
 gi|229444317|gb|EEO50108.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353482|gb|EEZ02576.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638389|gb|EFF56754.1| 3'-5' exonuclease [Bacteroides ovatus SD CC 2a]
 gi|294446978|gb|EFG15569.1| 3'-5' exonuclease [Bacteroides xylanisolvens SD CC 1b]
          Length = 222

 Score = 75.0 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 21/178 (11%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    I +D+E             ++ ++Q+S  +    + R+       P LV 
Sbjct: 36  AVAYLQSRSVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVD 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L +    K+    + D  +L         P   T+ +    + Y  Q G     L+   
Sbjct: 92  LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             L    ISK+Q+ S+W AD LSD Q QYAA+D      +     ++L++ G  ++A 
Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGDWEIAA 201


>gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
          Length = 944

 Score = 75.0 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 66/194 (34%), Gaps = 27/194 (13%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEKREKI 78
           IAVDTET  L      L  + ++   G    I  A    +       L  +L +    KI
Sbjct: 373 IAVDTETTSLDTFEAELAGISIAVETGKARFISFAQSALDRDKTVEILKPLLENPSLPKI 432

Query: 79  FHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG--------- 128
               ++D+ VL    G+ + PV F T +AS +      +H L D     LG         
Sbjct: 433 GQNLKYDMLVLKKY-GIELSPVAFDTMLASYVLNPE-EKHNLDDLAAHHLGYRTTTFDEL 490

Query: 129 INISKAQQS---SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS--C 183
           +   K +Q     D       ++   YA  D      L   F +KL              
Sbjct: 491 VGTGKTKQHIFEVD------PEKLSDYACQDADLALQLEGVFRKKLDGETELLWLCENIE 544

Query: 184 CNFLMDRAELDLLG 197
              +   AE++  G
Sbjct: 545 FPLVTVLAEMEYAG 558


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 925

 Score = 75.0 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 63/192 (32%), Gaps = 39/192 (20%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------AAGQKNAPN----- 65
           A  +  +A DTET GL P R  L  V L+   G    I I      A G           
Sbjct: 330 ATRIGQVAFDTETTGLDPLRAELVGVSLATAPGRACYIPIKHDAGPAQGSLLLDPSPAAA 389

Query: 66  -------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
                        L  +L D    KI H  ++D+ V+    G+ V     T + S +   
Sbjct: 390 GPDILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA-GLTVTAFDDTMLLSYVLDG 448

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHA 162
            ++ HG+ +  K  L  +  K    +D          +    L    L YAA D      
Sbjct: 449 ASHGHGMDELAKLHLDHDTIK---FADVCGTGKNQITFDRVPLDKA-LAYAAEDADITLR 504

Query: 163 LRLQFTEKLQRL 174
           L      +L   
Sbjct: 505 LHGALKARLLAE 516


>gi|146294019|ref|YP_001184443.1| 3'-5' exonuclease [Shewanella putrefaciens CN-32]
 gi|145565709|gb|ABP76644.1| 3'-5' exonuclease [Shewanella putrefaciens CN-32]
          Length = 298

 Score = 75.0 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 22  AIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            I  DTET       +R     L ++Q++  D T  + + A   +    L  +L DE   
Sbjct: 115 VIGFDTET---RASFERGVQHPLSLIQIATHD-TCYLFQHALLAERLGLLKPVLEDENIL 170

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK-- 133
           K+    R D   L   +G+ V P      + ++L      + G +  +  LL   I K  
Sbjct: 171 KVGVGLRSDGQALTREWGINVTPRLDLNWVLAQL--GAGKEMGTRQLVATLLQKRIDKPK 228

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               S+W    L+  Q+ YAA D +       +  +KL+
Sbjct: 229 KVTLSNWQQVPLTSTQIVYAALDALAAQHCFSELIDKLK 267


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score = 75.0 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 19/195 (9%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDE 73
           R    +++DTET         L  +  +  +     + I A ++ A  +V +      D 
Sbjct: 345 RTNKILSLDTETTSTNAIEAELVGLSFAVEERKAFYVAIPANREEALKIVAIFKPLYEDP 404

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---IN 130
           +  K+    ++DI VL +       P+F T IA  L +    +H +    +  LG   ++
Sbjct: 405 EILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPEL-RHNMDYMAEVYLGYRTVH 463

Query: 131 ISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
           I +        Q    +  DLS   + +YA  D      L+     KL   G + L    
Sbjct: 464 IEELIGPRGRNQK---NMRDLSPTDIYEYACEDADITLRLKNVLEPKLDEAGVARLFHDI 520

Query: 183 CCNFLMDRAELDLLG 197
               +   A+++L G
Sbjct: 521 EMPLVGVLADMELNG 535


>gi|71745756|ref|XP_827508.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70831673|gb|EAN77178.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 390

 Score = 75.0 bits (184), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 20/184 (10%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAG 59
           +  HE    A  + +   +IA+D E   T     +  R+ +VQ  S     V +  +   
Sbjct: 58  VDTHEKLKEAVTSLQGARSIALDIEAFCTTDQAKQLGRISLVQACSDAKPVVFLFDVLTL 117

Query: 60  QKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTY 113
             +    ++  +L D +  K+F   R D+  L    GV+   V   ++   A +   R+ 
Sbjct: 118 TPDVFVKDMQSLLSDREIRKLFFDCRRDVEALSCQLGVKPEGVLDLQVFFTAIQWKLRSV 177

Query: 114 TNQHGLKDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163
             + G+   LK + G+   +                W    L D  L+YAA DV H+  L
Sbjct: 178 NRRSGMGYVLKSVAGLTRQEGDSAVQTAMTLGNRPVWDIRPLPDHFLEYAAGDVRHILLL 237

Query: 164 RLQF 167
               
Sbjct: 238 SNYL 241


>gi|261331708|emb|CBH14702.1| zinc finger protein, predicted [Trypanosoma brucei gambiense
           DAL972]
          Length = 390

 Score = 74.6 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 20/184 (10%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAG 59
           +  HE    A  + +   +IA+D E   T     +  R+ +VQ  S     V +  +   
Sbjct: 58  VDTHEKLKEAVTSLQGARSIALDIEAFCTTDQAKQLGRISLVQACSDAKPVVFLFDVLTL 117

Query: 60  QKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTY 113
             +    ++  +L D +  K+F   R D+  L    GV+   V   ++   A +   R+ 
Sbjct: 118 TPDVFVKDMQSLLSDREIRKLFFDCRRDVEALSCQLGVKPEGVLDLQVFFTAIQWKLRSV 177

Query: 114 TNQHGLKDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163
             + G+   LK + G+   +                W    L D  L+YAA DV H+  L
Sbjct: 178 NRRSGMGYVLKSVAGLTRQEGDSAVQTAMTLGNRPVWDIRPLPDHFLEYAAGDVRHILLL 237

Query: 164 RLQF 167
               
Sbjct: 238 SNYL 241


>gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 751

 Score = 74.6 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI-IRIAAG--- 59
           I+  +         R+  A A DTET G+   +D +  V L+       + I +A     
Sbjct: 120 IQTEDQFKALLADLRHEPAFAFDTETTGVDVYQDVIVGVSLTLPRAGYHVYIPVAHNNAG 179

Query: 60  -----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L   L D    K+ H  +FDI +L    G+R+R +   T IA ++    
Sbjct: 180 PQLRRSYVLNGLKRYLTDPTVGKVLHNAKFDIHMLLRH-GMRMRGLAHDTMIAMKILNEN 238

Query: 114 TNQHGLKDNLKEL---LGINISKAQQSSD-WSAD-----DLSDEQLQYAASDVVHLHALR 164
                LK+         G +  ++    D +         L D  L YAA D      L 
Sbjct: 239 EPSVALKNLATRYGKFFGFD-GESHTFEDLFGKACFADVPL-DMALIYAAKDTHLTWELY 296

Query: 165 L-QFTEKLQRLGRSDLATSCCNFLMDR-AELDLLGWENVDIFS 205
             Q     +R     L     N L+D   E++  G+     F+
Sbjct: 297 KWQMEHLTKREDLLKLYRELENPLVDICVEMEQTGFAVDTAFA 339


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score = 74.6 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 82/231 (35%), Gaps = 41/231 (17%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQL------------------SP 46
           ++HE  + A  AA     + +DTET  L P +  L  + L                  + 
Sbjct: 302 QLHE--LVAILAADPAPLV-IDTETTSLDPLQAELVGISLTLAAPGSDESEAKASRTAAG 358

Query: 47  GDGTVDIIRIAAGQKNAP-------------NLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
            +G    + IA  +++                L  +L D++R K+ H  ++D+ VL    
Sbjct: 359 ENGACWYLPIAHRREDGSAAANQLPLAEVRRALAPLLADDRRLKLGHNLKYDLQVLHRHD 418

Query: 94  GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD------LSD 147
                P+  T IAS L       HGL    +ELL   ++   + +D              
Sbjct: 419 LPLAPPLADTMIASYLIDPSRRSHGLDVLSEELLQRRLTSFAEVTDRDRRPEAFAHVAPA 478

Query: 148 EQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRAELDLLG 197
               Y+  DV     L   F  KL  L  ++L        L   A ++ +G
Sbjct: 479 AAAAYSCEDVAATRLLWQLFQPKLAELELAELFYQVEITLLPILARMERVG 529


>gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
 gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
          Length = 1060

 Score = 74.6 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 69/223 (30%), Gaps = 46/223 (20%)

Query: 17  ARYVDAIAVDTETLGLMPRRD------------RLCIVQLSP--------------GDGT 50
           A     IAVDTET  L   R             R C + L+               G+G 
Sbjct: 453 AEEAGVIAVDTETDSLDAHRAGLVGVSLAVATGRACYIPLAHVQAAKVQADATDLFGEGA 512

Query: 51  V--DIIRIAAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104
              D++    GQ         L  +L +    K+    ++D  VL    G+ V P   T 
Sbjct: 513 APSDVVEPVPGQIPLKEAVARLKPLLENPGVLKVGQNLKYDWVVLARY-GIEVAPFDDTM 571

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAAS 155
           + S +       HG+ +  +  LG         SD +              D+   YAA 
Sbjct: 572 LISYVLDAGKGGHGMDELARRHLGHQP---ITFSDVAGTGRNKVTFDRVAIDKATAYAAE 628

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
           D      L      +L    R  +  +     L   A ++  G
Sbjct: 629 DADVTLRLWRMMKPRLVAEHRVAVYETLERPLLPVIARMEQRG 671


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score = 74.6 bits (183), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 19/195 (9%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDE 73
           R    +++DTET         L  +  +  +     + I A ++ A  +V +      D 
Sbjct: 345 RTNKILSLDTETTSTNAIEAELVGLSFAVEERKAFYVVIPANREEALKIVAIFKPLYEDP 404

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---IN 130
           +  K+    ++DI VL +       P+F T IA  L +    +H +    +  LG   ++
Sbjct: 405 EILKVGQNIKYDIEVLRHYGVEVAGPMFDTMIAHYLLQPEL-RHNMDYMAEVYLGYRTVH 463

Query: 131 ISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
           I +        Q    +  DLS   + +YA  D      L+     KL   G + L    
Sbjct: 464 IEELIGPRGRNQK---NMRDLSPTDIYEYACEDADITLRLKNVLEPKLDEAGVARLFRDI 520

Query: 183 CCNFLMDRAELDLLG 197
               +   A+++L G
Sbjct: 521 EMPLVGVLADMELNG 535


>gi|224123698|ref|XP_002330186.1| predicted protein [Populus trichocarpa]
 gi|222871642|gb|EEF08773.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score = 74.6 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 37/180 (20%)

Query: 18  RYVDAIAVDTETLGLMPRR------DRLCIVQLSPGDGTVDIIRIAAGQKNAPN-----L 66
                + +D E     P        +++ I+Q++  D TV I  +    ++ P+     L
Sbjct: 373 EGCKVVGLDCE---WKPNYVKGSKPNKVSIMQIAS-DKTVFIFDLIKLFEDIPDILDNCL 428

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVR-----------VRPVFCTKIASRLTRTYTN 115
             +L   +  K+ +  + DI  L +++G             ++ VF              
Sbjct: 429 SRILQSPRILKLGYNFQCDIKQLAHSYGELRCFNNYEKLLDIQNVF-----------KDA 477

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           + GL    +++LG  ++K +++S+W    L   QL+YAA D   L  +   F    Q  G
Sbjct: 478 RGGLSGLAEKILGTGLNKTRRNSNWELRPLGHNQLEYAALDAAVLVHIFHHFHNHSQSAG 537


>gi|46249983|gb|AAH68411.1| Zgc:175195 protein [Danio rerio]
          Length = 504

 Score = 74.6 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 24/172 (13%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94
             + ++QLS   G   ++R+ A Q      +L+ +L D++  K+      D   L    G
Sbjct: 12  PPVSLLQLSSFTGRCVLVRLLAFQNAQLPKSLIVLLRDQRVLKVGVGCYEDGKRLAQDHG 71

Query: 95  VRVRPVFCT----KIASRLTRT--YTNQHGLKDNLKELLGINISKA--QQSSDWSADDLS 146
           + +    CT     +A R ++    TN   LK   ++LL + + K+   + SDW A++LS
Sbjct: 72  LTLS---CTVDLRYLALRRSKQAVLTNGLSLKSLAEDLLNVTLDKSVELRCSDWEAEELS 128

Query: 147 DEQLQYAASDVVHLHALRLQFTEK-----LQRLGRSDLA----TSCCNFLMD 189
            EQ+ YAA D     AL            L   G  +      ++CC  L+D
Sbjct: 129 PEQITYAARDAQISIALFFHLLGMNTERHLPAEG--EAVFLHLSACCQGLVD 178


>gi|255693419|ref|ZP_05417094.1| 3'-5' exonuclease domain protein [Bacteroides finegoldii DSM 17565]
 gi|260620806|gb|EEX43677.1| 3'-5' exonuclease domain protein [Bacteroides finegoldii DSM 17565]
          Length = 214

 Score = 74.6 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    I +D+E             ++ ++Q+S  +    + R+       P LV 
Sbjct: 36  AVAYLQSRSVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTRP-LVD 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L +    K+    + D  +L        +   C ++   + +       L+     L  
Sbjct: 92  LLENPDVIKVGLSLKDDFMMLHKRAPFNQQN--CIELQDYVRQFGIQDKSLQKIYAILFK 149

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             ISK+Q+ S+W AD LSD Q QYAA+D      +     ++L++ G  ++A   
Sbjct: 150 EKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGNYEIAPEE 203


>gi|307170679|gb|EFN62847.1| Exonuclease 3'-5' domain-like-containing protein 2 [Camponotus
           floridanus]
          Length = 622

 Score = 74.6 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 9/153 (5%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +  D E +   P    + ++QL+  +G V + R+       P L  +L  +   K+  
Sbjct: 109 GVLGFDCEWVKEGP----VSLLQLATYNGVVALFRLGKIGYVPPKLKELLATKHILKVGV 164

Query: 81  YGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINISK--AQQS 137
               D   +   +G RV        +A  L     ++  L     E L I + K    + 
Sbjct: 165 ASFEDGQKIVKDYGCRVSGTLDLRSLAENL--HLPSRKSLAAMSLEYLNIEMDKIIEVRC 222

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            DW A  LSDEQ+ YAA D +    +  +  +K
Sbjct: 223 GDWDASTLSDEQVAYAACDALASVIIYHKIMQK 255


>gi|195114732|ref|XP_002001921.1| GI14516 [Drosophila mojavensis]
 gi|193912496|gb|EDW11363.1| GI14516 [Drosophila mojavensis]
          Length = 625

 Score = 74.6 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 69/195 (35%), Gaps = 36/195 (18%)

Query: 10  DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54
           D+P EC                 +    I +D+E +  +  +++LC++Q++       I 
Sbjct: 403 DLPDECLIIVDSFPIFNRMLKHLQREHIIYLDSEWMQNVCAQNQLCLLQIATTCNVYLID 462

Query: 55  ----RIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGV-----RVRPVFC-- 102
               R A  +++   L   +  +    K+      D++VL  +  +              
Sbjct: 463 CLASRPALEEQHWRALGATVFNNPNILKVGFSMLNDLSVLQRSLPLQLRLHMPHHYLDLR 522

Query: 103 -------TKIASRLTRTYTNQHG--LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
                   +    L     N+ G  L D     LG  ++K  Q S+W+   L  EQ+ YA
Sbjct: 523 NVWLELKKRQGVELPFGNVNRAGDALTDLSMLCLGKKLNKTNQCSNWANRPLRREQILYA 582

Query: 154 ASDVVHLHALRLQFT 168
           A D   L  +    +
Sbjct: 583 AIDARCLLLIYACLS 597


>gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 933

 Score = 74.6 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E D+            IAVDTET GL      L  +  +  +G    + +      AP
Sbjct: 341 LTEADLARWLEKLNAAKLIAVDTETDGLDYMSANLVGISFALENGEAAYLPLHLDYLGAP 400

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L +    KI    +FD+ +     G+ ++ + F T + S    + 
Sbjct: 401 KTLEKNTALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEFDTMLLSYTLDS- 458

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164
           T +H + D  K  LG          D      + L+  Q+      +YAA D      L+
Sbjct: 459 TGRHNMDDLAKRYLGHQ---TISFEDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTMKLQ 515

Query: 165 LQFTEKLQ 172
               EKL+
Sbjct: 516 QVLWEKLE 523


>gi|290975670|ref|XP_002670565.1| predicted protein [Naegleria gruberi]
 gi|284084125|gb|EFC37821.1| predicted protein [Naegleria gruberi]
          Length = 491

 Score = 74.6 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 62/174 (35%), Gaps = 35/174 (20%)

Query: 47  GDGTVDIIRIAAGQKNAPNLVG--MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT- 103
            +G + I+ +     +  +     ++ DE+ EK+FHY  FD+  L        + V CT 
Sbjct: 164 PNGKIVILDVLDMSDDLLDYFEDNIMFDERCEKVFHYKTFDLKFLG--GASYCKNVSCTH 221

Query: 104 KIASRLTRTYTNQHG---LKDN---------------------------LKELLGINISK 133
           +I+S+    +        L                              +KELL  +  K
Sbjct: 222 EISSKYIPYHLLPISNYKLDTLSHYLTSRIISHINNVSQTSNDIGNLEEIKELLTYSNKK 281

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
             Q SDW    LS  Q++YA  DV+ L  +       L     S    S   +L
Sbjct: 282 ELQESDWFERPLSPTQVEYATQDVITLFGVHQLLINILVHQDNSFHLQSYFKYL 335


>gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
 gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
          Length = 920

 Score = 74.3 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76
           + +++DTET      R  L  +  S  +     + + A ++ A         +  ++K  
Sbjct: 348 EFVSIDTETTSTDAIRAELVGLSFSVEENKAFYVPLPANREEALKYIRIFKPLYENDKIL 407

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           KI    ++D  VL          +F T IA  L +   + H +    + LLG   I+I  
Sbjct: 408 KIGQNIKYDYKVLNNYGVTLQGEMFDTMIAHYLIQPELH-HNMDYMAETLLGYRTIHIEE 466

Query: 133 ------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q+    +  DLS  +  +YAA D      L+     +L+ LG  +L  +   
Sbjct: 467 LIGPKGKKQK----NMRDLSPTDICEYAAEDADITLRLKHLLEPRLKELGLEELFWNIEM 522

Query: 185 NFLMDRAELDLLG 197
             +   A+++L G
Sbjct: 523 PLVRVLADMELNG 535


>gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
 gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
          Length = 928

 Score = 74.3 bits (182), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 66/199 (33%), Gaps = 37/199 (18%)

Query: 10  DIPAE----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA------- 58
           D+ A       A     +  DTET GL P R RL  V L+   G    I +         
Sbjct: 324 DLAALENWIALATGGGLVGFDTETTGLDPLRARLVGVSLAVAPGRACYIPVLHAPAQAQG 383

Query: 59  -----GQKNAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
                   +AP           L  +L D    K+ H  ++D+ V+    G+ V P   T
Sbjct: 384 DLLGGPSTDAPQIIPAAETLARLKPLLADPSVLKVGHNIKYDMQVMAMQ-GLAVEPFDDT 442

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGI-NI-------SKAQQSSDWSADDLSDEQLQYAAS 155
            + S      ++ HGL +     LG  NI       S   Q + +    L      YAA 
Sbjct: 443 MLLSYALDGASHGHGLDELCLLHLGHANIPFSEVCGSGRNQVT-FDRVPLDKA-RDYAAE 500

Query: 156 DVVHLHALRLQFTEKLQRL 174
           D      L      +L   
Sbjct: 501 DADMTLRLHALLKPRLLSE 519


>gi|296004476|ref|XP_001350990.2| DNA binding protein, putative [Plasmodium falciparum 3D7]
 gi|224591370|emb|CAD49018.2| DNA binding protein, putative [Plasmodium falciparum 3D7]
          Length = 448

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAV---LFYTFG 94
           LC++QL   D    +  I     + P ++  +L +E+  K+ H    DI     +F +  
Sbjct: 140 LCLIQLCSSD-LCFVFNIHKLNGHIPISVKNILENEEIIKVAH----DIKNEKDMFLSNN 194

Query: 95  VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
           ++++ VF   + +     +     L+  +K  L   + K  + S+W    L  EQ+ YAA
Sbjct: 195 IQIKNVFD--LYNYAIDNFIYPPSLQSLVKIYLNKFLDKKFRLSNWLNYSLLQEQILYAA 252

Query: 155 SDVVHLHALRLQFTE 169
            D      +     E
Sbjct: 253 VDAYASRQIYFHLDE 267


>gi|327281940|ref|XP_003225703.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           [Anolis carolinensis]
          Length = 619

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 9/160 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIA----AGQKNAPNLVGMLV 71
             Y   + +D E +    ++ + + ++QL+   G   ++R+      GQ     L+ +L 
Sbjct: 98  LEYCPVLGIDCEWVSADGKKAKPVSLLQLAVASGLCILLRLTHLTIDGQVLPKTLLHILG 157

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL--KDNLKELLGI 129
                K+      D   L   +GV V+     +  +   R    Q+GL  K   +++L  
Sbjct: 158 SGSILKVGVGCWEDAYKLLRDYGVIVKGTVDLRYLAMRQRKALPQNGLSLKSLAEKILNY 217

Query: 130 NISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           ++ K+   + S+W  ++L++EQ+ YAA D     AL L  
Sbjct: 218 SLDKSFHLRCSNWEVEELAEEQITYAARDAQVSVALFLHL 257


>gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
 gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
          Length = 926

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 20/189 (10%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHY 81
           DTET      R  +  + L    G    I +      G++    L  +  D    K+   
Sbjct: 359 DTETDSKDALRANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRPLFADTAIGKVGQN 418

Query: 82  GRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG---------INI 131
            ++DI VL    G+ VR  +F T IA  L      +H + +  + LLG         +  
Sbjct: 419 MKYDIQVLSRY-GIEVRGQLFDTMIAHYLL-FPDLRHNMDEMAETLLGYRTIHYSDLVGS 476

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDR 190
            K +         L      YA  D      L  +    L   G + L  S     +   
Sbjct: 477 DKQEVHI--RQVPL-QNLADYAMEDADITWQLYERLNAMLSEAGMTSLFESIEMPLVPVL 533

Query: 191 AELDLLGWE 199
            +++  G +
Sbjct: 534 VDMERSGVK 542


>gi|317475897|ref|ZP_07935153.1| 3'-5' exonuclease [Bacteroides eggerthii 1_2_48FAA]
 gi|316907930|gb|EFV29628.1| 3'-5' exonuclease [Bacteroides eggerthii 1_2_48FAA]
          Length = 210

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 21/180 (11%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + +D+E             ++ ++Q+S  +    + R+       P ++ 
Sbjct: 36  AVAYLKKCPILGIDSETRPSFTKGQSH--KVALLQVSSEEHCF-LFRLNLTGLTLP-IIM 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L +    K+    R D  +L              + A    + Y    G     L+   
Sbjct: 92  LLENPGITKVGLSLRDDFMMLHKRAPFE-------QRACVELQEYVRTFGIQDRSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             L G  ISK+Q+ S+W A+ L+  Q QYAA+D      +  +  E L+R G  ++A   
Sbjct: 145 AILFGEKISKSQRLSNWEAEMLTPSQQQYAATDAWACLNIYNRLQE-LKRTGDFEMAIDE 203


>gi|159480884|ref|XP_001698512.1| hypothetical protein CHLREDRAFT_142979 [Chlamydomonas reinhardtii]
 gi|158282252|gb|EDP08005.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 3780

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 60/178 (33%), Gaps = 33/178 (18%)

Query: 22  AIAVDTETL-----GLMPRRDRLCIVQLSPGDGTVDIIRIAA------------------ 58
            + +D E       G+     R+ ++QLS  D    +                       
Sbjct: 172 VVGLDAEWAPELKPGVRH---RISVIQLSTADCCWVLRPPPDRGGASAAVGGASGGAGSE 228

Query: 59  -GQKNAPNL----VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRT 112
                 P L    V +L D +  K     + D+  L   FGVRVR       +A R+   
Sbjct: 229 GAGNGHPALPAAVVRVLTDPRVVKAGVGIQEDVKRLERDFGVRVRGAVDVRLVAQRVAPD 288

Query: 113 YTNQHG-LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
                G L+     LLG  + K  Q SDW A  L   Q+ YAA D      L L+   
Sbjct: 289 CLAAGGSLQALTGSLLGRRLDKGPQRSDWGAGRLDQRQVVYAAHDAWLSRELLLELHR 346


>gi|242022456|ref|XP_002431656.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212516964|gb|EEB18918.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 734

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 26/181 (14%)

Query: 18  RYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----- 68
             V  + +D E      GL   +  L + Q++       +  IA       NL       
Sbjct: 374 DGVKVVGLDAEWKPCF-GLK--KSELALFQIATRHVVYLLDIIALSSVVPENLWIRFSEI 430

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTF----GVRV--RPVFCTKIASRLT--RTYTNQHG-- 118
           +  +    K+    + D  ++        G+ +    +   +I  R+     +T  H   
Sbjct: 431 LFGNPNILKLGFGLQGDFTIIQEKLLGLHGIIIPETSLLDLEILWRVLQNNNFTFPHAAS 490

Query: 119 ----LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
               L   ++  LG  + K+ Q SDW    L   Q+ YAA D   L        ++ +  
Sbjct: 491 VSSTLNSFIEFCLGEKLDKSNQFSDWEKRPLRHSQIVYAALDAYCLLEAYDVILKESKNQ 550

Query: 175 G 175
            
Sbjct: 551 N 551


>gi|218129756|ref|ZP_03458560.1| hypothetical protein BACEGG_01335 [Bacteroides eggerthii DSM 20697]
 gi|217987866|gb|EEC54191.1| hypothetical protein BACEGG_01335 [Bacteroides eggerthii DSM 20697]
          Length = 210

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 21/180 (11%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + +D+E             ++ ++Q+S  +    + R+       P ++ 
Sbjct: 36  AVAYLKKCPILGIDSETRPSFTKGQSH--KVALLQVSSEEHCF-LFRLNLTGLTLP-IIM 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L +    K+    R D  +L              + A    + Y    G     L+   
Sbjct: 92  LLENPGITKVGLSLRDDFMMLHKRAPFE-------QRACVELQEYVRTFGIQDRSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             L G  ISK+Q+ S+W A+ L+  Q QYAA+D      +  +  E L+R G  ++A   
Sbjct: 145 AILFGEKISKSQRLSNWEAEMLTPSQQQYAATDAWACLNIYNRLQE-LKRTGDFEMAIDE 203


>gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
 gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
          Length = 930

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 65/196 (33%), Gaps = 24/196 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R   + A D+ET  L PR+  L  +  +    +   +  ++   +A  L  +  D    
Sbjct: 358 LREAGSFAFDSETTALNPRQAELVGLSFATKAHSGWWVPASSEALDA--LRPLFADNSIT 415

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI------- 129
           KI H  +FD+A+L         P + T +A  L      +H L    ++ L         
Sbjct: 416 KIGHNLKFDLAILAAQSCPVDGPCYDTMLAHALIEPE-QRHNLDTLAEDYLRYSTIRFSE 474

Query: 130 ---NISKA----QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
              +  K       S D            YA  D      L   F  KL+  G++ +   
Sbjct: 475 LMPDAKKGSPLDYSSVD------PQALADYATEDADVTLQLWECFKPKLEESGQASIFYE 528

Query: 183 -CCNFLMDRAELDLLG 197
                L     ++  G
Sbjct: 529 IETPLLPVLVAMESEG 544


>gi|193290152|ref|NP_001123262.1| exonuclease 3'-5' domain-like 2 [Nasonia vitripennis]
          Length = 605

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 22/168 (13%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             +  D E +   P    + ++QL+  +G   + R++      P L  +L      K+  
Sbjct: 85  GVLGFDCEWVNEEP----VSLLQLATHNGVCALFRLSKIGHIPPKLKELLSSRDLLKVG- 139

Query: 81  YGRFDI-AVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL------KDNLKELLGINISK 133
              FD    +   +  +V             R   ++H L           + L   + K
Sbjct: 140 VASFDDGRKIAKDYNCQVVGTVD-------LRMLAHRHSLPSPKSLAALCVQYLDTEMDK 192

Query: 134 --AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
               + S+W+AD L++EQ+ YAA D      +  Q  +K+ +  RS  
Sbjct: 193 ILEVRCSNWNADSLTNEQISYAAHDAYAAVLIYHQILQKIVQK-RSIW 239


>gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1]
 gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1]
          Length = 910

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 71/227 (31%), Gaps = 35/227 (15%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS--------------PGDGT 50
                +P  C   R    + +DTET  L   R  L  + L                   T
Sbjct: 298 TTTEQLPTVCEELRAAGGLVIDTETTSLNALRAELVGISLCPLPAAATAADNSQPTPPPT 357

Query: 51  VDIIRIAAGQKNAPN-------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
              + I     +                L  +L D +  K+ H  ++D+ VL        
Sbjct: 358 AWYLPIGHRLADGSPAPGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDLQVLKSHGLELA 417

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD------LSDEQLQ 151
            P+  + IAS L       H L D   ELL   ++   + S                  +
Sbjct: 418 APLADSMIASYLIDPGRRSHKLDDLSSELLERQLTSFAEVSAGDRRPEAFAYVEPAAACR 477

Query: 152 YAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
           Y+  DVV    L   F  +LQ+LG   L        L   A ++ LG
Sbjct: 478 YSCQDVVASRLLWELFAPQLQQLGLDSLLHEVEMALLPILARMERLG 524


>gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
 gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
          Length = 994

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 70/203 (34%), Gaps = 41/203 (20%)

Query: 9   GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------- 56
            D+ A  A A     +  DTET  L      LC V L+ G      + +           
Sbjct: 384 ADLDAFIARATEAGVVGFDTETDALSATHAGLCGVSLAIGPNDACYVPLTHEHPPVEGAG 443

Query: 57  ------------AAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
                          Q + P     L G+L D    K+   G++D+AV+    G+RV P+
Sbjct: 444 GLDFGGDTDARPPLDQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMARR-GIRVAPI 502

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ 151
             T + S +     + HG+ +  +  LG             KAQ+S  +   +L      
Sbjct: 503 DDTMLISYVLEGGLHGHGMDELSRLHLGHEPIPFKSVAGTGKAQKS--FKHVELKPATC- 559

Query: 152 YAASDVVHLHALRLQFTEKLQRL 174
           YAA D      L      +L   
Sbjct: 560 YAAEDADVTLRLWRILKPRLATE 582


>gi|299472524|emb|CBN77309.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 648

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 34/178 (19%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP---------NLVGMLVDE 73
           + +D E     P  +R  ++Q++          IA   + A           +  +L D 
Sbjct: 449 VGLDVE---NSPTTNRATLLQVATSTDVFLFDLIALLGRAASLEVSRQFDATVEDLLTDP 505

Query: 74  KREKI-FHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRTYTNQ-------HGLKD 121
              K+ F +   D   L  TF    G R       +IA+ L     +          L  
Sbjct: 506 HIVKLGFSFA-HDATALRKTFPSARGFR-------RIAALLEVGELSSAVLGRSTPSLSK 557

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             +  LG  + K + +S W    L+ +Q++YAA D   L  +  +    L+R GR   
Sbjct: 558 TCEAWLGKPLDKTECASKWDVRPLTADQVRYAALDAHCLVGIFEEML--LERGGRLAA 613


>gi|111226700|ref|XP_642107.2| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|90970724|gb|EAL68469.2| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 686

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 7/138 (5%)

Query: 33  MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT 92
                ++ ++QLS  + T  I +++  +K   +L  +L D +  K+      D A +F T
Sbjct: 188 THYNHKVALIQLSSKNETFLI-QVSQMEKIPISLEQILTDPRLIKVGVAVSQDAATIFQT 246

Query: 93  FGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQ 149
           F V  +       IA RLT    N  GL      ++ + ++K+   +   W    LS++Q
Sbjct: 247 FSVVTKGYVDLVPIA-RLTNYEGN--GLASLALNVMNVTLNKSNKIRCGHWENKKLSNDQ 303

Query: 150 LQYAASDVVHLHALRLQF 167
           + YAA+D      +    
Sbjct: 304 IHYAAADAWVGREIFEIM 321


>gi|319901369|ref|YP_004161097.1| 3'-5' exonuclease [Bacteroides helcogenes P 36-108]
 gi|319416400|gb|ADV43511.1| 3'-5' exonuclease [Bacteroides helcogenes P 36-108]
          Length = 220

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 21/180 (11%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + +D+E             ++ ++Q+S  +    + R+       P +  
Sbjct: 36  AVAYLKSCTLLGIDSETRPSFTKGQSH--KVALLQVSSEEHCF-LFRLNLTGLTLPVIT- 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L +    K+    R D  +L              + A    + Y    G     L+   
Sbjct: 92  LLENPNVTKVGLSLRDDFMMLHKRAPFE-------QHACIELQEYVRAFGIQDKSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             L G  ISK+Q+ S+W AD LS+ Q QYAA+D      +  +  E L+R G  ++A   
Sbjct: 145 GILFGEKISKSQRLSNWEADMLSESQKQYAATDAWACLNIYNRLQE-LKRTGDFEIAPEE 203


>gi|195111972|ref|XP_002000550.1| GI22458 [Drosophila mojavensis]
 gi|193917144|gb|EDW16011.1| GI22458 [Drosophila mojavensis]
          Length = 595

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 8/171 (4%)

Query: 21  DAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
             +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L D+   K+
Sbjct: 73  KVMGFDCEWITVGG-TRRP-VALLQLSSHKGLCALFRLCCMKQIPKDLRELLEDDAVLKV 130

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ-- 136
               + D   L + +GV V   F  +  + +        GL    +  L   + K  +  
Sbjct: 131 GVAPQDDAMKLSHDYGVGVASTFDLRYMAVMAGHQAE--GLGKLSQTHLNTALDKNWRLA 188

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
            S+W A  L   QL YAA+D +   A+  + ++ L+     D        L
Sbjct: 189 CSNWEAPQLDSAQLNYAANDALAAVAIFQKLSKDLEPRTFWDWRAPKFKQL 239


>gi|332195255|gb|AEE33376.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
          Length = 589

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 37/176 (21%)

Query: 13  AECAARYVDAIAVDTETLGLMPRR------DRLCIVQLSPGDGTVDIIRIAAGQKNAPN- 65
           A         + +D E     P        +++ I+Q+   D  + I+ +     +A   
Sbjct: 371 ATSFLEGCRVVGIDCE---WKPNYIKGSKQNKVSIMQIGS-DTKIFILDLIKLYNDASEI 426

Query: 66  ----LVGMLVDEKREKIFHYGRFDIAVLFYTFG-----------VRVRPVFCTKIASRLT 110
               L  +L  +   K+ +  + DI  L  ++G           + ++ VF         
Sbjct: 427 LDNCLSHILQSKSTLKLGYNFQCDIKQLALSYGDLKCFERYDMLLDIQNVF--------- 477

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
                  GL    K++LG++++K +++SDW    LS  QL+YAA D   L  +   
Sbjct: 478 --NEPFGGLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHIFRH 531


>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
 gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
          Length = 956

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREK 77
           ++  DTET GL P    L  +  S   G    +  +  ++ A      L     +E  +K
Sbjct: 385 SVCFDTETTGLNPLTAELVGIAFSWDAGKGFYLPFSDNKEEAQQLIEELRPFFENEDIQK 444

Query: 78  IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           +    ++DI VL + + + VR P+F T +A  L      +H +    +  L    ++I  
Sbjct: 445 VGQNLKYDIKVL-HKYDIEVRGPLFDTMLAHYLINP-DMRHNMDVLAETYLNYSPVSIET 502

Query: 133 ------KAQQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
                 K Q+    S     L ++Q +YA  D      L+  F ++L       L     
Sbjct: 503 LIGKKGKNQK----SMRDVPL-EDQTEYAVEDADITLQLKEHFEKELGDANTQKLFDDIE 557

Query: 184 CNFLMDRAELDLLG 197
              L   A ++L G
Sbjct: 558 IPLLRVLAAMELEG 571


>gi|301754868|ref|XP_002913303.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
           [Ailuropoda melanoleuca]
          Length = 596

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 25/155 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 199 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLKMVLEDKRILKVIHDCRWLSD--CLSHQYG 256

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGINISKAQQS---------- 137
           + +  VF T++A     S  T  +       L+++L   L +   K              
Sbjct: 257 ILLNNVFDTQVADVLQFSMETGGFLPNCISSLQESLIRHLKVA-PKYLSFLEERQKLIQE 315

Query: 138 --SDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
               W    LS   L+  A +  +L  LRL   ++
Sbjct: 316 NPEVWFTRPLSPSLLKILALEATYLRPLRLVLLDE 350


>gi|195352042|ref|XP_002042524.1| GM23271 [Drosophila sechellia]
 gi|194124393|gb|EDW46436.1| GM23271 [Drosophila sechellia]
          Length = 625

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 54/206 (26%)

Query: 10  DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54
           D+P EC                 +    I +D+E +  +   ++LC++Q++  D  V +I
Sbjct: 404 DLPDECLIIVDKADQFDRMLYHLQQECVIYLDSEWMQSVCGDNQLCVLQIAT-DHNVYLI 462

Query: 55  RIAAGQKNAPNLVGML-----VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
              A +        +L      +    K+      D++VL  +      P+   ++  ++
Sbjct: 463 DCLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSL-----PL---QLRLQM 514

Query: 110 TRTYTN-----------QHG--------------LKDNLKELLGINISKAQQSSDWSADD 144
              Y +           + G              L D     LG  ++K+ Q S+W+   
Sbjct: 515 PHHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRP 574

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEK 170
           L  EQ+ YAA D   L  +      +
Sbjct: 575 LRREQILYAAIDARCLLLIYNTLIAR 600


>gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
 gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
          Length = 924

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 65/215 (30%), Gaps = 47/215 (21%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-------------- 62
           AR     AVDTET GL P    L  + L+P  G    I +                    
Sbjct: 338 ARTSGVCAVDTETDGLDPLTAPLVGISLAPQCGRACYIPLGHQVDLMDSLGTPQMPVGTA 397

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +  D    K+F   +FD+ VL     V+  P+  T +                +
Sbjct: 398 LEILEPLFADPSVLKVFQNAKFDLLVLTQAGSVQPAPIDDTML-----------ISYAQS 446

Query: 123 LKELLGINISKAQQSS-DWSADDLSD-----------EQLQ------YAASDVVHLHALR 164
             +  G  + +  + + D S     +            Q+       YAA D      L 
Sbjct: 447 AGQH-GQGMDELSRLTLDHSPIPYDEVTGTGRNRVVFSQVDIARATPYAAEDADVTLRLW 505

Query: 165 LQFTEKLQRLGRSDLATSCCN--FLMDRAELDLLG 197
                +L R  R+           +   A+++  G
Sbjct: 506 QVLRPRL-RTSRALALYEEMERPLIPILADMERAG 539


>gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
 gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
          Length = 920

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKRE 76
             +++DTET         L  +  S  +     + I A ++ A         +  +E+  
Sbjct: 348 GFVSLDTETTSTDAISAELVGLSFSVEENRAFYVAIPADRQEATRIVGIFKPLYENEQIL 407

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           KI    ++D  VL +        +F T IA  L +   + H +    + LLG   I+I  
Sbjct: 408 KIGQNIKYDYEVLSHYGVTLQGKMFDTMIAHYLIQPELH-HNMDYMAETLLGYRTIHIEE 466

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q+    +  DLS   + +YAA D      L+      L+ LG  +L  +   
Sbjct: 467 LLGPKGKKQR----NMRDLSPTDIYEYAAEDADITLRLKHVLEPHLKELGLEELFWNIEM 522

Query: 185 NFLMDRAELDLLG 197
             +   A+++L G
Sbjct: 523 PLVRVLADMELNG 535


>gi|331212705|ref|XP_003307622.1| hypothetical protein PGTG_00572 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309298025|gb|EFP74616.1| hypothetical protein PGTG_00572 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1227

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 32/180 (17%)

Query: 14  ECAARYVDAIAVDTETL--GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN------APN 65
           E       A+A D E     +    +R  ++QL      V I++I++             
Sbjct: 592 ELEGGPYVAVAFDMEWTISRVRGHENRTAVIQLGS-RSQVLIVQISSDVAWRAQGIMPSC 650

Query: 66  LVGMLVDEKREKIFHYGRFD-IAVLF-YTFGVRVR-PVFCTKIASRLTR---------TY 113
           L+  LV+ +  KI    R D + ++  +  G +     F     SRL R          Y
Sbjct: 651 LIDFLVNPQIVKIGVGIRNDGLKLIRDHKLGQKPFLNSF--LELSRLVRALGQPDCASGY 708

Query: 114 TNQHGLKDNLKELLGINISK-AQQSSDWSADDLSDEQLQYAASDVV-------HLHALRL 165
           +    L+  + + L + + K   ++SDW A  L+  Q+ YAASDV+       HL  L  
Sbjct: 709 SRLISLQQIVADHLKVYLPKIDTRTSDW-AKPLTATQIDYAASDVIATVRVTMHLFKLFE 767


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 22/208 (10%)

Query: 7   HEGDIPAECAARYVDAI-AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           ++ D+   C     + I ++DTET         L  +  +  +     + + A ++ A  
Sbjct: 334 NQEDLKKLCDYFLTNKILSLDTETTSTSAIDAELVGLSFAVKEFEAFYVPVPANREEALQ 393

Query: 66  LVGML----VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
           +V +      + +  K+    ++D+ VL          ++ T IA  L +   + H +  
Sbjct: 394 IVNIFKPAYENPEILKVGQNLKYDLEVLRNYGIELKGKMWDTMIAHYLIQPELH-HNMDY 452

Query: 122 NLKELLG---INIS-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170
             +  L    I+I        K Q+    S   L   Q+ +YAA D      L+ +   +
Sbjct: 453 MAEIYLNYQTIHIEELIGPKGKNQK----SMRSLPPSQVYEYAAEDADITLRLKNKLEPE 508

Query: 171 LQRLGRSDL-ATSCCNFLMDRAELDLLG 197
           L++    DL        +   AE++L G
Sbjct: 509 LKKAECEDLFYNIEMPLMPVLAEMELNG 536


>gi|224051280|ref|XP_002200511.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 1
           [Taeniopygia guttata]
          Length = 621

 Score = 73.9 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVDEKRE 76
             + +D E + +  + + + ++Q++   G   ++R+    A+GQ     L+ ++ D    
Sbjct: 105 PVLGIDCEWVSVEGKANPVSLLQMASSSGLCILVRLPRLVASGQTLPKTLLDIMADSAVL 164

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGINISKA 134
           K+      D   L + +G+ V+     +  +   R     N   LK   +++L   + K+
Sbjct: 165 KVGVGCWEDACKLLHDYGLAVKGSMDLRYLAMRQRKDLLHNCLSLKSLAEKVLNFPLDKS 224

Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              + S+W A++L+ +Q+ YAA D     A+    
Sbjct: 225 PHVRCSNWEAEELTQDQVLYAARDAQVSVAVFFHL 259


>gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
 gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
          Length = 890

 Score = 73.5 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 66/203 (32%), Gaps = 29/203 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDII--RIAAGQKNAPN---- 65
           A+    +A+DTET  L P R  L     C   +SPG      +     A +  AP     
Sbjct: 310 AKAAGQLAIDTETTSLDPIRADLVGFSLC---VSPGLAYYAPLAHDWPADEPQAPRRQAL 366

Query: 66  --LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
             L   L D    KI    ++D+ VL         P+F T +A  L       HGL+   
Sbjct: 367 DLLGQALADPGLLKIGQNLKYDLNVLRRAGLSVAGPLFDTMVADYLLNPAKASHGLEAIA 426

Query: 124 KELLGINI--------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            E LG  +         K +  +        +  + YAA D             KL    
Sbjct: 427 AEHLGRGVIGFEEAVGGKGKGFA---QAP-PERAVPYAAEDADVALQAAQALGPKLDEAD 482

Query: 176 RSDLATS-CCNFLMDRAELDLLG 197
              L            A+++  G
Sbjct: 483 LRRLFDELEMPLTPLLAKMERYG 505


>gi|225450638|ref|XP_002278277.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089752|emb|CBI39571.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score = 73.5 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 69/176 (39%), Gaps = 37/176 (21%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDR------LCIVQLSPGDGTVDIIRIAAGQKNAPN- 65
           A C       + +D E     P  ++      + I+Q++  +    I  +     + P+ 
Sbjct: 368 ASCYIEGCKVLGIDCE---WKPNYEKGSKPNKVSILQVAS-EKRAFIFDLIKLATDVPDV 423

Query: 66  ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-----------VRPVFCTKIASRLT 110
               L+ +L   +  K+ +  + D+  L  ++G             ++ +F         
Sbjct: 424 LDNCLISILHSSRILKLGYNFQCDVNQLTQSYGELKCFKHFEMLLDIQNMF--------- 474

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
                + GL    K++LG  ++K +++S+W    LS  QL+YAA D   L  +  +
Sbjct: 475 --KEPRGGLSGLAKKVLGAGLNKTRRNSNWEQRPLSQHQLEYAALDAAVLVHIFSK 528


>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
 gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
          Length = 941

 Score = 73.5 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 66/195 (33%), Gaps = 21/195 (10%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEK 74
              ++  DTET  L P   +L  +  S   G    +      +    L+ +L       +
Sbjct: 366 KQKSVCFDTETTSLNPLEAQLVGIAFSWEGGKGYYLPFEDNIEKTQQLIELLRPFFESPE 425

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130
            EKI    ++DI VL         P F T IA  L      +H +    +  L       
Sbjct: 426 IEKIGQNLKYDIKVLDKYGIKVEGPTFDTMIAHYLINP-DMRHNMDILAETYLNYTPQPI 484

Query: 131 ---ISK--AQQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
              I K    Q S        L  EQ +YAA D      L+  F ++L       L    
Sbjct: 485 SELIGKKGKNQKS---MRDVPL-AEQTEYAAEDADITFQLKEFFEKELDEAKTRKLFNEI 540

Query: 183 CCNFLMDRAELDLLG 197
               +   A++++ G
Sbjct: 541 EMPLVEVLADMEIEG 555


>gi|242053889|ref|XP_002456090.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor]
 gi|241928065|gb|EES01210.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor]
          Length = 239

 Score = 73.5 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 10/167 (5%)

Query: 23  IAVDTE---TLGLMP-RRD-RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           + +DTE    +      RD R+ ++QL  G     + +          L   L +     
Sbjct: 59  VGLDTEWRVVVSHDDGYRDNRMAVLQLCVG-HRCLVFQTVHADYVPAALRAFLANPDHRF 117

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLT-RTYTNQHGLKDNLKELLGINISK-- 133
           +      D+  L+    + V        +A+ +  R    + GLK  ++E++G+ + K  
Sbjct: 118 VGVSVDGDVERLYCDCKILVATPVDLRHVAAEVLSRPELRRAGLKALVREVMGVVMEKPK 177

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
               S WS   LS EQ++YAA D    + +        + L   D A
Sbjct: 178 HVTMSRWSRRPLSPEQVRYAAIDAFVSYEVGRLLLTSQRALELEDAA 224


>gi|304383100|ref|ZP_07365575.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335786|gb|EFM02041.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 218

 Score = 73.5 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 23  IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + +DTE             ++ ++Q+S  D T  + R+        ++   L D    KI
Sbjct: 48  LGIDTETRPAFKKGQTH--KVSLLQVSTND-TCFLFRLNMIG-LTSSIKYFLEDSTVPKI 103

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
                 D+  L              +    +        GL      + G  ISK +Q +
Sbjct: 104 GLSLGDDVMALQKRGSFIPGNFIDLQ--DHVKEIGIQDLGLAKLYANIFGQRISKREQLT 161

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           +W AD L+++Q +YAA+D      L  +F  +L++
Sbjct: 162 NWDADVLTEKQKRYAATDAWACIKLYEEFN-RLKK 195


>gi|294883486|ref|XP_002770958.1| hypothetical protein Pmar_PMAR007114 [Perkinsus marinus ATCC 50983]
 gi|239874096|gb|EER02774.1| hypothetical protein Pmar_PMAR007114 [Perkinsus marinus ATCC 50983]
          Length = 469

 Score = 73.5 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 36/172 (20%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAP--------NLVGMLVDEKREKIFHYGRFDIAV 88
            +LC+   S    +V ++ I     +A         +L  ++ D + EK+F+  R D+  
Sbjct: 295 AQLCL---SSDPRSVYVVDITRLGFHASHATTHTGTSLKSIMEDSRIEKVFYDPRNDVDA 351

Query: 89  LFYTFGVRVRPVFCTKIAS---RLTRTYTNQ--HGL-KDNLKELLGI------------N 130
           L+Y F V  + VF  ++A    R  R  T +   GL K  ++  + +            +
Sbjct: 352 LYYQFNVAPQNVFDLQLAEVALRRARGLTVRYVIGLFKCLVQSEVFVQPGLREFAMWIND 411

Query: 131 ISK-------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           I K             ++   L    + YA+ DV +L  L   FT++L+  G
Sbjct: 412 IGKALFEPKHGGSYKVFTERPLHPGIIVYASHDVRYLLPLYDAFTKQLKCAG 463


>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
 gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
          Length = 940

 Score = 73.5 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 18/178 (10%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEK 74
              ++  DTET  L      L  +  S   G    + +   +                 +
Sbjct: 365 QQKSVCFDTETTSLNALEAELVGIAFSWNKGKGYYLALPEDKTEVLEILDPFKAFFEHPE 424

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130
            EKI H  ++D+ VL         P+F T IA  L      +H +    +  L  +    
Sbjct: 425 IEKIGHNLKYDLKVLRNYDIHVKAPLFDTMIAHYLINP-DMRHNMDILAETYLNYSAQSI 483

Query: 131 ---ISK--AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
              I K    Q +     ++S ++Q +YA  D      L+  F E++      +L   
Sbjct: 484 TELIGKKGKNQGT---MREVSLEQQTEYAVEDADITLQLKEYFHEEMSTAKTLELYQK 538


>gi|84995770|ref|XP_952607.1| DNA binding protein [Theileria annulata strain Ankara]
 gi|65302768|emb|CAI74875.1| DNA binding protein, putative [Theileria annulata]
          Length = 247

 Score = 73.5 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95
           R +  IVQ+  GD T  I  I       PN  GM +     ++ H    D+ +LF  +G 
Sbjct: 102 RCKPSIVQIC-GDSTCFIYLIYKIGY-IPN-KGMFITSFILQVSHGAPSDMRLLFKHYGT 158

Query: 96  RVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
           +            L + Y      LK+  + +L + ++K QQ S+W AD L  +Q+ YA+
Sbjct: 159 KCTNFVD---LKDLCKDYNIYPASLKNATESVLNLKLNKKQQCSNWEADKLVPDQISYAS 215

Query: 155 SDVVHLHALRLQFT 168
           +D      + ++  
Sbjct: 216 TDAWVTREIFIKLN 229


>gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601]
 gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601]
          Length = 935

 Score = 73.5 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 72/225 (32%), Gaps = 36/225 (16%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN- 62
           ++  E   P   AA     +AVDTET GL      L  + L    G    I +A    + 
Sbjct: 331 VKTAEDLAPFIDAAHQRGWVAVDTETTGLNEMACDLVGISLCTEPGEACYIPLAHRADSD 390

Query: 63  -------------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
                                 L  +L D    KI    ++D  +     GVR+ P+  T
Sbjct: 391 GGLFGDGDLAEGQMPMQAALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GVRIAPIDDT 449

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYA 153
            + S       + HG+    +  L               K +         + D  ++YA
Sbjct: 450 MLMSYAMNAGLHGHGMDALSERYLSHTPIPIKELLGSGKKMKTF---DQVPIEDA-VKYA 505

Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
           A D      L      +L R   + +  +     +   AE+++ G
Sbjct: 506 AEDADITLRLWTLLKPQLHRNHVTRVYETMERPLVPVLAEMEMAG 550


>gi|78357431|ref|YP_388880.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78219836|gb|ABB39185.1| 3'-5' exonuclease [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 201

 Score = 73.5 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 65/172 (37%), Gaps = 11/172 (6%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIA 57
           T+   E ++ A   A    + I  DTET      R    +   ++Q +  D    I    
Sbjct: 30  TLVRTEDELEAALRALHSEELIGFDTET--RPTFRKGKMNLPSLIQFAARDMVYLI--HL 85

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                +  +  +L      K     R DI  L          V      +R     T  H
Sbjct: 86  GWVAFSEGIQDVLSSPHIVKTGVAVRDDIKDLKKLACFEDAAVVDLGEVARELGMET--H 143

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           GL++    LL   ISKA Q S+WS  +LS +Q+ YAA+D      + L+  E
Sbjct: 144 GLRNLAANLLEFRISKAAQCSNWSNLELSRQQISYAATDAWVSREIHLRMRE 195


>gi|332827669|gb|EGK00408.1| hypothetical protein HMPREF9455_03256 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 181

 Score = 73.5 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 22/179 (12%)

Query: 4   IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVD 52
           I V + +  AE AA Y+    AI  DTET      R         ++ ++QLS  D    
Sbjct: 8   IIVVQSESEAEKAAAYLKKQTAIGFDTET------RPAFRKGVSHQIALMQLSTDDTCFL 61

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTR 111
                 G  +   L  +LV+   +KI    + D + +               ++ S +  
Sbjct: 62  FRLNIIGLPDC--LAEILVNPAIKKIGLSLKDDFSAIHKRNAAFVPSNFI--ELQSFVKN 117

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
                +GL+     L    ISK Q+ S+W AD LSD Q  YAA D      +  +   +
Sbjct: 118 YGIEDNGLQRIYGILFEKRISKGQRLSNWEADVLSDAQKMYAAIDAWACLKIYNELKVR 176


>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 933

 Score = 73.5 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 18/190 (9%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           +TI  H+            +  AVDTET  L     +L  +  +   G    + +A    
Sbjct: 335 STILTHDELDEWIDKLSKAELFAVDTETTSLNYMEAKLVGLSFAVEAGKAAYLPLAHDYL 394

Query: 62  NAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP           L  +L + + +K+    ++D+++L    G++++ + F T + S + 
Sbjct: 395 DAPQQLNQAEALAKLKPLLENPEIKKVGQNLKYDMSILAN-VGIKLQGIAFDTMLESYVF 453

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALR 164
            +  ++H + D   + LG      ++ +   A  L+  Q+       YAA D      L 
Sbjct: 454 NSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQLTFNQISLEVAAPYAAEDADITLRLH 513

Query: 165 LQFTEKLQRL 174
                +LQ+ 
Sbjct: 514 QHLWPRLQKE 523


>gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.]
          Length = 912

 Score = 73.5 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 21/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               +  A+DTET    P + +L  + +S        I +A   +  P           L
Sbjct: 330 LESANHFALDTETTSENPLKAKLVGISVSLKANEAFYIPLAHKYEGVPKQLDMNETLNML 389

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
            G+  +   +KI    ++D  VL    G+ +  V+  T IAS L       H L     +
Sbjct: 390 KGVFENPDIKKIGQNIKYDWIVLKRH-GIDIAGVYSDTMIASYLINPSKRAHNLDQIALD 448

Query: 126 LLGI-------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
            LG         + K +  S +S   L    + YA  D             KL  +G  D
Sbjct: 449 FLGHKKITFEETVGKKKPESGFSNVPLEKA-VSYACEDADITLMAHDVLFPKLLEIGLKD 507

Query: 179 LATS-CCNFLMDRAELDLLG 197
           L  +     +    ++++ G
Sbjct: 508 LFENIEMPLIPVLMKMEIKG 527


>gi|255542852|ref|XP_002512489.1| 3-5 exonuclease, putative [Ricinus communis]
 gi|223548450|gb|EEF49941.1| 3-5 exonuclease, putative [Ricinus communis]
          Length = 570

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 25/167 (14%)

Query: 18  RYVDAIAVDTETLGLMPRRDR------LCIVQLSPGDGTVDIIRIAAGQKNAPN-----L 66
                + +D E     P  ++      + I+Q++  D  V I  +    ++ P+     L
Sbjct: 369 EGCKVVGLDCE---WKPNFEKGSKPNKVSIMQIAS-DKMVFIFDLIKLFEDVPDTLDNCL 424

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKD 121
             +L   +  K+ +  + D   L  ++G          +   +    + R    + GL  
Sbjct: 425 TRILQSPRILKLGYNFQCDTKQLAQSYGELKCFKHYEMLLDIQ---NVCRE--PRGGLSG 479

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             K+LLG  ++K +++S+W    LS  QL+YAA D V L  +     
Sbjct: 480 LAKKLLGAGLNKTRRNSNWEQRPLSQHQLEYAALDAVVLIHIFHHIR 526


>gi|260171573|ref|ZP_05757985.1| hypothetical protein BacD2_06865 [Bacteroides sp. D2]
 gi|315919887|ref|ZP_07916127.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693762|gb|EFS30597.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 219

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 21/175 (12%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    I +D+E             ++ ++Q+S  +    + R+       P LV 
Sbjct: 36  AVAYLQSRPVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVD 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L +    K+    + D  +L         P   T+ +    + Y  Q G     L+   
Sbjct: 92  LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L    ISK+Q+ S+W AD LSD Q QYAA+D      +     ++L++ G  +
Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGDWE 198


>gi|114046520|ref|YP_737070.1| 3'-5' exonuclease [Shewanella sp. MR-7]
 gi|113887962|gb|ABI42013.1| 3'-5' exonuclease [Shewanella sp. MR-7]
          Length = 303

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 12/159 (7%)

Query: 21  DAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +  DTET       +R     L +VQL+  D T  + + A   +    L  +L +E+ 
Sbjct: 121 SVLGFDTET---RASFERGVQHPLSLVQLATSD-TCYLFQRAVLGERLAELKPLLENEQI 176

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-- 133
            K+    R D   L   + ++V P      A         + G +  +  LL   I K  
Sbjct: 177 LKVGIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGA-GKEMGTRQLVAALLHKRIDKPK 235

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               S+W    LS  Q+QYA  D +  +    Q  +KLQ
Sbjct: 236 KITLSNWQQVPLSQAQIQYAVLDALAANLCFWQLIDKLQ 274


>gi|160887119|ref|ZP_02068122.1| hypothetical protein BACOVA_05135 [Bacteroides ovatus ATCC 8483]
 gi|293370879|ref|ZP_06617424.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|299148614|ref|ZP_07041676.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23]
 gi|156107530|gb|EDO09275.1| hypothetical protein BACOVA_05135 [Bacteroides ovatus ATCC 8483]
 gi|292634095|gb|EFF52639.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|298513375|gb|EFI37262.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23]
          Length = 219

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 21/175 (12%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    I +D+E             ++ ++Q+S  +    + R+       P LV 
Sbjct: 36  AVAYLQSRPVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVD 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L +    K+    + D  +L         P   T+ +    + Y  Q G     L+   
Sbjct: 92  LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L    ISK+Q+ S+W AD LSD Q QYAA+D      +     ++L++ G  +
Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGDWE 198


>gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
 gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
          Length = 952

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 21/194 (10%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
            + +++DTET G  P    L  +  S  +     + +   ++ A      L  +  +EK 
Sbjct: 379 SEILSIDTETTGTEPMEAELVGMSFSDAENQAYYVPVPPIREEALKIVNELRPLYENEKS 438

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132
            K+    ++D+ VL         P+F T +A  + +    +H +    +  L    I+I 
Sbjct: 439 LKVGQNIKYDMIVLQNYEIQVKGPLFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHID 497

Query: 133 -------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
                  K Q+    +  DLS E++ +YA  D      L+    ++L+  G   L     
Sbjct: 498 ELIGPRGKNQK----NMRDLSPEEVYRYACEDADVTLKLKNILEKELKEQGGEHLFHEIE 553

Query: 184 CNFLMDRAELDLLG 197
              +     ++  G
Sbjct: 554 MPLVPVLVNIESNG 567


>gi|297848138|ref|XP_002891950.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337792|gb|EFH68209.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 569

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 37/176 (21%)

Query: 13  AECAARYVDAIAVDTETLGLMPRR------DRLCIVQLSPGDGTVDIIRIAAGQKNAPN- 65
           A         + +D E     P        +++ I+Q+   D  + I+ +     +A   
Sbjct: 372 ATSFLEGCRVVGIDCE---WKPNYIKGSKQNKVSIMQIGS-DTKIFILDLIKLYNDATEM 427

Query: 66  ----LVGMLVDEKREKIFHYGRFDIAVLFYTFG-----------VRVRPVFCTKIASRLT 110
               L  +L  +   K+ +  + D+  L  ++G           + ++ VF         
Sbjct: 428 LDNCLSQILQSKSTLKLGYNFQCDVKQLALSYGDLKCFERYDMLLDIQNVF--------- 478

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
                  GL    K++LG++++K +++SDW    L+  QL+YAA D   L  +   
Sbjct: 479 --KEPFGGLAGLTKKILGVSLNKTRRNSDWEQRPLTQNQLEYAALDAAVLIHIFRH 532


>gi|71908088|ref|YP_285675.1| 3'-5' exonuclease [Dechloromonas aromatica RCB]
 gi|71847709|gb|AAZ47205.1| 3'-5' exonuclease [Dechloromonas aromatica RCB]
          Length = 217

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 18/156 (11%)

Query: 21  DAIAVDTET--------LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
             I  DTE+        +   P      +VQL+  D  V ++ +A    N   L  +L  
Sbjct: 47  PVIGFDTESKPTFLKGEVSTGPH-----LVQLAT-DEHVFLLPVAFAA-NHEVLRRILSA 99

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI- 131
               K+      D +VL    G+ +  V     A R    +    G K  +    G    
Sbjct: 100 ADILKVGLGLGNDRSVLRSRLGIELNNVLDLGEAMR-GPGHRGTVGAKVAVAHYFGQKFQ 158

Query: 132 -SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
            SK   +S+W+   L++ QL YAA+D      L   
Sbjct: 159 KSKKVGTSNWANPRLNERQLLYAANDAHVALQLYHA 194


>gi|296221953|ref|XP_002756974.1| PREDICTED: werner syndrome ATP-dependent helicase [Callithrix
           jacchus]
          Length = 1433

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 21/161 (13%)

Query: 26  DTETLGLMPRRD---------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           D E +G               ++ ++QL   +    +  I++       L  +L ++  +
Sbjct: 75  DGEMVGFDMEWPPVYNKGKLGKVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAIK 134

Query: 77  KIFHYGRFDIAV----LFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131
           K        I      L   F V++      T +A++  +       L   +K LLG  +
Sbjct: 135 K----AGVGIEGDQWKLLRDFDVKLENFVELTDVANKKLKC-KETWSLNGLVKHLLGKQL 189

Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
              K+ + S+WS   L+++Q  YAA+D      +  +    
Sbjct: 190 LKDKSIRCSNWSKFPLTEDQKLYAATDAYAGFVIYRKLEIM 230


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76
             +++DTET G  P R  L  +  +  +     + + A +  A         +  + +  
Sbjct: 351 PILSLDTETTGTDPIRAELVGMSFAYAENQAFYVPVPADRTEAQRIVDKFKPVFENPQTL 410

Query: 77  KIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           K+    ++D+ VL    GV ++ P+F T IA  + +   + HG+    +  L     K +
Sbjct: 411 KVGQNIKYDMLVLANY-GVEIQGPMFDTMIAHYVLQPELH-HGMDYLAEIYLHYETIKIE 468

Query: 136 ---------QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                    Q    +  DL    + +YA  D      L+    ++L++     L      
Sbjct: 469 ELIGPKGKNQK---NMRDLDPANIYRYACEDADVTLKLKNVLEKELKQNDAEALFCDIEM 525

Query: 185 NFLMDRAELDLLG 197
             +   A ++  G
Sbjct: 526 PLVPVLAYMERNG 538


>gi|281338215|gb|EFB13799.1| hypothetical protein PANDA_001056 [Ailuropoda melanoleuca]
          Length = 500

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 25/155 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 104 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLKMVLEDKRILKVIHDCRWLSD--CLSHQYG 161

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGINISKAQQS---------- 137
           + +  VF T++A     S  T  +       L+++L   L +   K              
Sbjct: 162 ILLNNVFDTQVADVLQFSMETGGFLPNCISSLQESLIRHLKVA-PKYLSFLEERQKLIQE 220

Query: 138 --SDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
               W    LS   L+  A +  +L  LRL   ++
Sbjct: 221 NPEVWFTRPLSPSLLKILALEATYLRPLRLVLLDE 255


>gi|153807650|ref|ZP_01960318.1| hypothetical protein BACCAC_01932 [Bacteroides caccae ATCC 43185]
 gi|149130012|gb|EDM21224.1| hypothetical protein BACCAC_01932 [Bacteroides caccae ATCC 43185]
          Length = 214

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 21  DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
             + +D+E             ++ ++Q+S  +    + R+       P LV +L +    
Sbjct: 44  PILGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVDLLENPGII 99

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINI 131
           K+    + D  +L              + +    + Y  Q G     L+     L    I
Sbjct: 100 KVGLSLKDDFMMLHKRA---PFN----QQSCIELQDYVRQFGIQDKSLQKIYAILFKEKI 152

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           SK+Q+ S+W AD LSD Q QYAA+D      +     ++L+R G  ++A   
Sbjct: 153 SKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKRTGNYEIAPEE 203


>gi|301091688|ref|XP_002896023.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262095658|gb|EEY53710.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 575

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           +++ GL       LG+ + K  + S+W    L+  QL YAA D   L  +  +  E+
Sbjct: 500 SSRLGLAAIAATYLGLPLDKRARMSNWERRPLTQAQLHYAALDAHVLVQIYYKMQEQ 556


>gi|242003018|ref|XP_002422581.1| 3-5 exonuclease, putative [Pediculus humanus corporis]
 gi|212505371|gb|EEB09843.1| 3-5 exonuclease, putative [Pediculus humanus corporis]
          Length = 522

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 36/192 (18%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK-- 77
           + A+  D E +    R   + ++QL+       + R+         L+ +L D+   K  
Sbjct: 26  LSALGFDCEWVSYHVRYP-VALLQLATYKKDCYLFRLNKLSIIPFELIEILEDQHIFKLG 84

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA--Q 135
           +      D   L   + +RV+  F       L   Y    GL D  K +LGI ++K    
Sbjct: 85  VLPAI--DGLYLSADYDIRVQTTFD------LRYLYPMCKGLGDLAKVVLGIMLNKDGII 136

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
             SDW   +LS  Q +YAA D +    +  +F   LQR G                    
Sbjct: 137 AGSDWECHELSYSQKKYAAMDALVAIDVFKRF---LQRFGW------------------- 174

Query: 196 LGWENVDIFSHS 207
            GW+N   F++S
Sbjct: 175 -GWDNSKTFNYS 185


>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 933

 Score = 73.1 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 72/199 (36%), Gaps = 27/199 (13%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E D+            IAVDTET GL      L  V  +  +G    + +      AP
Sbjct: 341 LTEADLARWLEKLNAAKLIAVDTETDGLDYMSANLVGVSFALENGEAAYLPLHLDYLGAP 400

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L +    KI    +FD+ +     G+ ++ + F T + S    + 
Sbjct: 401 KTLEKNTALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEFDTMLLSYTLDS- 458

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164
           T +H + D  K  LG          D      + L+  Q+      +YAA D      L+
Sbjct: 459 TGRHNMDDLAKRYLGHQ---TISFEDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTMKLQ 515

Query: 165 LQFTEKLQRL-GRSDLATS 182
               +KLQ   G  +L  S
Sbjct: 516 QVLWQKLQPQPGLVELYQS 534


>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
 gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
          Length = 918

 Score = 72.7 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 16/174 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  + IA+DTET  L     +L  +  +   G    + +A    +AP           L
Sbjct: 335 LKSAELIAIDTETTSLNYMEAKLVGISFAVEAGKAAYLPLAHDYIDAPEQLDKAVVFEKL 394

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L DE  +K+    ++DI++        +   F T + S +  +  ++H + D   + 
Sbjct: 395 QPLLEDENLKKVGQNLKYDISIFANAGICLLGVQFDTMLESYVFNSVASKHNMDDLALKY 454

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
           LG      ++ +      L+  Q+       YAA D      L      +L++L
Sbjct: 455 LGHKNISFEEIAGKGVKQLTFNQISLETAAPYAAEDADITLRLHQHLWSRLEKL 508


>gi|294944235|ref|XP_002784154.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983]
 gi|239897188|gb|EER15950.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983]
          Length = 368

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 6/169 (3%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETL-GLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQK 61
           I   E D  A  A      +  D+ET   L+P   ++  I+Q++       + R+     
Sbjct: 65  IDTVEEDARAADAFDKETLLGFDSETKPSLVPGVTNKTAIIQIAS-SSVCGVWRVRQLDV 123

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYTNQHGLK 120
             P L  +L D    K       ++  ++  F G++ +      + +   R       L+
Sbjct: 124 LPPTLTKLLTDPSITKASQGATSEVTTVYREFSGLKCQGFVDLHLLAMGLRCTPR--SLQ 181

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
                 L   + KA++ S+W    LS  QL+YAA+D      +      
Sbjct: 182 GLCALFLHKRLLKAERISNWEQVPLSPSQLEYAATDAWVSRQVLEAMRA 230


>gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
 gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
          Length = 950

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 76/214 (35%), Gaps = 33/214 (15%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--AAGQKNAPN------- 65
             A+    +AVDTET  L   +  L  V LS G G    I +    G  +          
Sbjct: 352 ATAQATGVLAVDTETTSLDEMQAELVGVSLSTGPGRACYIPLGHTTGGDDLFGTTALAPG 411

Query: 66  ----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
                     L  +L DE   KI    ++D  +     G+RV P   T + S    +  +
Sbjct: 412 QMPMDEALAILKPVLEDESLLKIGQNMKYDWKIFARH-GIRVAPFDDTMLMSYAMFSGLH 470

Query: 116 QHGLKDNLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
            HG+    +E L          I   KAQ + D     L      YAA D    + L   
Sbjct: 471 GHGMDALSEEYLRHRPIPIKELIGTGKAQITFD--KVPLDKA-TAYAAEDAEITYRLWAA 527

Query: 167 FTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWE 199
           F  +L R   + +  +     +   AE+++ G +
Sbjct: 528 FKPQLHRAQVTTVYETLERPLVPVLAEMEMAGVK 561


>gi|194759149|ref|XP_001961812.1| GF15154 [Drosophila ananassae]
 gi|190615509|gb|EDV31033.1| GF15154 [Drosophila ananassae]
          Length = 627

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 27/185 (14%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----- 70
             +    I +D+E L  +    +LC++Q++  D  V +I   A +   P    +L     
Sbjct: 427 DLQRQQTIYLDSEWLQNICGESQLCLLQIAT-DQFVYLIDCLARESIQPEQWRLLGSKVF 485

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVR-----VRPVFC------------TKIASRLTRTY 113
            +    K+      D++VL  +  ++                       T +   L    
Sbjct: 486 NNVNILKVGFSMACDLSVLQRSLPLQLRLHTPHHYLDLRSLWLQLKKQHTGV--ELPFGN 543

Query: 114 TNQHG--LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
            N+ G  L D     LG  ++K+ Q S+W+   L  EQ+ YAA D   L  +      ++
Sbjct: 544 INRAGGALSDLSFLCLGKKLNKSNQCSNWTNRPLRHEQIIYAAIDARCLFLIFKTLQARI 603

Query: 172 QRLGR 176
             L +
Sbjct: 604 PMLNK 608


>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
 gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
          Length = 1009

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 71/208 (34%), Gaps = 37/208 (17%)

Query: 2   TTIRVHEGDIPAE----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
            ++ V   D+ A      AA     +A DTET  L     +LC V L+   G    I +A
Sbjct: 387 RSLYVQVTDLQALEDWIAAATEQGFVAFDTETTALDAMSAKLCGVALALEPGRACYIPLA 446

Query: 58  ------------------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
                               +   P L  +L D+   KI    ++D  ++     +RV P
Sbjct: 447 HRAGDGLDFTGAGEIAQLPMESALPRLKALLEDDSVLKIGQNIKYDALIMRRHGDIRVAP 506

Query: 100 VFCTKIASRLT---RTYTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSD 147
              T + +      R      G+ +  K  LG             KAQ + D  A    D
Sbjct: 507 YDDTMLMAYACDQGRGGLAGFGMDELSKRHLGHTPIAFTDVAGKGKAQSTFDCIA---VD 563

Query: 148 EQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +  +YAA D      L   F  ++   G
Sbjct: 564 KATEYAAEDADVTLRLWHLFRARIAAEG 591


>gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
 gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
          Length = 959

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 59/193 (30%), Gaps = 51/193 (26%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------------------AAG 59
                IAVDTET  L     +LC + LS        I +                     
Sbjct: 361 EQAQVIAVDTETDDLSATHAKLCGISLSTDTNCACYIPLGHLASDGLDFGGGDDLKQIPL 420

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
            +    L  +L +    K+    ++D++VL    G+ V P   T + S +     + HG+
Sbjct: 421 DQAIALLKPVLENRNILKVGQNIKYDLSVLKRY-GIDVAPYDDTMLMSYVVEGGLHGHGM 479

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQL-------------------QYAASDVVHL 160
            +  +  LG                +  +Q+                   QYAA D    
Sbjct: 480 DELSQLHLGHT-------------PIPFKQVAGSGKTLKSFKFVALKEATQYAAEDADVT 526

Query: 161 HALRLQFTEKLQR 173
             L      +L R
Sbjct: 527 LRLWHVLKPRLVR 539


>gi|301627207|ref|XP_002942768.1| PREDICTED: probable exonuclease mut-7 homolog [Xenopus (Silurana)
           tropicalis]
          Length = 654

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           GL   ++++LG  + K +Q S+W    L ++Q+ YAA+D   L  +     +   R G +
Sbjct: 435 GLSLLVRDILGKPLDKTEQLSNWDKRPLREQQILYAAADAYCLLEVYDVLRQDPARFGLN 494

Query: 178 DLATSC 183
                C
Sbjct: 495 PNLQQC 500


>gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
 gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
          Length = 924

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 60/186 (32%), Gaps = 18/186 (9%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+      + A     + V  IAVDTET  L      L  + L    G    I       
Sbjct: 332 TLVETREQLQALLEELQQVTHIAVDTETTSLDVFEAELAGISLCAEAGKAFFIATTPDAL 391

Query: 62  NAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116
                   L  +L +    K     ++D+ VL    G+ + P+ F T +AS +       
Sbjct: 392 ERKEVVKQLKPLLENPAITKSGQNLKYDMLVLKKY-GIELAPISFDTMLASYVLNP-DEH 449

Query: 117 HGLKDNLKELLGINISK--------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           H L D     LG   +K         Q+   +  +   +    YA  D      L     
Sbjct: 450 HNLDDMALRYLGRTTTKYDELTGTGKQRRHIFEVEK--EALTNYACQDADVAFQLEEVLQ 507

Query: 169 EKLQRL 174
            +LQ  
Sbjct: 508 AQLQAE 513


>gi|217072026|gb|ACJ84373.1| unknown [Medicago truncatula]
          Length = 187

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I  D E + L  R   LCI+QL+  D    +  I  G          L  +   K+ H 
Sbjct: 69  VIGFDCEAVDL-CRDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHD 127

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
            + D   L++ FG+++  V  T+IA  L      Q
Sbjct: 128 CKRDSEALYFQFGIKLNNVVDTQIAYSLLEEQEGQ 162


>gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 755

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 69/190 (36%), Gaps = 24/190 (12%)

Query: 16  AARYVDAIAVDTETLGLMPRRD-RLCIVQLSPGDGTVDI-IRIA---AGQKN-----APN 65
             +  D IAVDTET GL    D  + +   +       + I +A   AGQ+         
Sbjct: 133 DLQQEDEIAVDTETTGLDVYNDVIVGL-SFTLPKADYHVYIPVAHKVAGQQLSRRAVLTA 191

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           L  +L D    KI H  ++DI +L    G+R+R +   T IA  +         LK+   
Sbjct: 192 LKPILTDVNIGKILHNSKYDIHMLIRH-GLRLRGIKHDTMIAMAVLNENEPTLALKNLAT 250

Query: 125 ---ELLGINISKAQQ------SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
              +  G    K+         + ++   L D  L YAA D    + L     + L +  
Sbjct: 251 KYGKYFGFE-DKSYTYEELFGKTSFAEIPL-DAALVYAAKDTHLTYELYKWQRQHLNQKE 308

Query: 176 RSDLATSCCN 185
              L      
Sbjct: 309 SLRLIYDELE 318


>gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
 gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
          Length = 935

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 29/206 (14%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNL 66
           + AE A         DTET  + P +  L  +  +   G    + + AG++NA       
Sbjct: 353 LAAELA--QQSEFCFDTETTHVEPTQAELVGMSFAYKSGEAYYVPVPAGKENAQAVVEIF 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKE 125
             +L +EK  KI    ++D A++F  +GV VR P F T +A  L      +HG+    + 
Sbjct: 411 RPVLENEKILKIAQNLKYD-AIVFKWYGVEVRGPYFDTMVAHYLLEPEM-RHGMDYLAET 468

Query: 126 LLGIN-------ISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172
            L  +       I K         D L+  Q+       YAA D      L+  F  KL+
Sbjct: 469 YLSYSPISIEMLIGKK------GKDQLNMSQIDLEKVTDYAAEDADITLQLKELFAPKLE 522

Query: 173 RLGRSDLA-TSCCNFLMDRAELDLLG 197
             G  +L  T  C  +   A+L+  G
Sbjct: 523 EGGVQELFDTIECPLIKVLADLEYEG 548


>gi|255089332|ref|XP_002506588.1| predicted protein [Micromonas sp. RCC299]
 gi|226521860|gb|ACO67846.1| predicted protein [Micromonas sp. RCC299]
          Length = 1038

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           + GL   +  +LG  + K +Q SDW    L+ +Q+ YAA+D   L  L  +
Sbjct: 737 RVGLATLVASVLGAYVDKTEQCSDWERRPLTTDQVDYAAADAHVLTVLFDR 787


>gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
          Length = 964

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 69/200 (34%), Gaps = 39/200 (19%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------- 56
           AR    +  DTET  L      LC V L+ G      I +                    
Sbjct: 364 ARAAGVVGFDTETDALSSTHAGLCGVSLAVGPNEACYIPLTHEHEPTGDGGLDFGDGGDA 423

Query: 57  --AAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
                Q + P     L  +L D    K+    ++D+AV+    GVRV P+    + S + 
Sbjct: 424 RPPLQQIDKPTALARLKDLLEDPSVLKVGQNIKYDLAVMARR-GVRVAPIDDVMLISYVL 482

Query: 111 RTYTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
               + HG+ +  +  LG             K+Q+S  +   +L    + YAA D     
Sbjct: 483 EGGLHGHGMDELARLHLGHEPIPFKSVAGTGKSQKS--FKHVELKSA-VCYAAEDADVTL 539

Query: 162 ALRLQFTEKLQRLGRSDLAT 181
            L      +L   G S++  
Sbjct: 540 RLHRLLKPRLAAEGLSNVYE 559


>gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2]
 gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2]
          Length = 935

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 29/210 (13%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------------------ 56
            A R    +AVDTET  L   R  L  + L    GT   I +                  
Sbjct: 343 AAIRERGVVAVDTETTSLDEMRAELVGISLCVQAGTACYIPLGHRQGGGDLFGSSALTEG 402

Query: 57  -AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
                +    L  +L D+   KI    ++D  +L    G+ V P+  T + S       N
Sbjct: 403 QMPVAQALALLKPVLEDDAILKIGQNMKYDAKILAR-LGISVAPIDDTMLMSYAMHAGLN 461

Query: 116 QHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            HG+     + LG         +   + +  +    +    + YAA D      L   F 
Sbjct: 462 SHGMDALSDQYLGHQPIAIKPLLGSGKSAVTFDRVPIDQA-VAYAAEDADITLRLWELFK 520

Query: 169 EKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
            +L R   + +  +     +   A++++ G
Sbjct: 521 PQLHRAHVTTVYETLERPLVPVLAQMEMAG 550


>gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265]
 gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
          Length = 940

 Score = 72.7 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKI 78
           +AVDTET  L      L  + LS    T   I  A      +K    L  +L +    K 
Sbjct: 369 VAVDTETTSLKTCEAELAGISLSATPATASFISFARTGLSREKTIELLRPLLENPAIAKT 428

Query: 79  FHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
               ++D+ VL    G+ + P+ F T +AS L    T  H L D     L +  +K  + 
Sbjct: 429 GQNLKYDLLVLKNY-GLELSPISFDTMLASYLLNPETT-HNLDDLAARHLKLRTTKYDEL 486

Query: 138 S----------DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           +          D     L+D    YA  D      L     ++L   
Sbjct: 487 TGTGKTKLHIDDVEPRKLTD----YACQDADIALRLTAILQKELAEE 529


>gi|198438094|ref|XP_002131917.1| PREDICTED: similar to MUTator family member (mut-7) [Ciona
           intestinalis]
          Length = 921

 Score = 72.3 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           GL     + LG  + K++Q SDW    L   Q+ YAA D   L  +    + +LQ LG
Sbjct: 505 GLSKLALQTLGQALDKSEQISDWERRPLRVTQVTYAALDAFCLLEIYDVLSIRLQELG 562


>gi|167765134|ref|ZP_02437247.1| hypothetical protein BACSTE_03520 [Bacteroides stercoris ATCC
           43183]
 gi|167696762|gb|EDS13341.1| hypothetical protein BACSTE_03520 [Bacteroides stercoris ATCC
           43183]
          Length = 210

 Score = 72.3 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 13/176 (7%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + +D+E             ++ ++Q+S  +    + R+       P +  
Sbjct: 36  AVAYLKKCSILGIDSETRPSFTKGQSH--KVALLQISSEEHCF-LFRLNLTGLTLPVIT- 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-HGLKDNLKELL 127
           +L      K+    R D  +L        R     +      RT+  Q   L+     L 
Sbjct: 92  LLETPAVTKVGLSLRDDFMMLHKRAPFEQRGCIELQ---EYVRTFGIQDRSLQKIYAILF 148

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           G  ISK+Q+ S+W AD L+  Q QYAA+D      +  +  E L+R G  +LA   
Sbjct: 149 GEKISKSQRLSNWEADVLTPSQQQYAATDAWACLNIYNRLQE-LKRTGDFELAIEE 203


>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
 gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
          Length = 921

 Score = 72.3 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 73/194 (37%), Gaps = 27/194 (13%)

Query: 9   GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-- 65
            D+    A       IA+DTET  L     +L  +  +   G    + +A    +AP+  
Sbjct: 329 DDLDTWIAKLSQAKLIAIDTETTSLNYMDAKLVGISFAIEAGEAAYLPLAHDYLDAPSQI 388

Query: 66  --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116
                   L  +L  +   K+    ++DI++     G++++ V F T + S +  +  ++
Sbjct: 389 DMATALEKLRPLLESDNPAKVGQNLKYDISIFAN-VGIKLKGVHFDTMLESYVFNSVASR 447

Query: 117 HGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQF 167
           H +     + LG    K     D     A  L+  Q+       YAA D      L    
Sbjct: 448 HDMDGLALKYLGH---KNISFEDVAGKGAKQLTFNQIDLDTAAPYAAEDADITLRLHQHL 504

Query: 168 TEKLQRLGRSDLAT 181
             +L++    +LA 
Sbjct: 505 WPRLEKE--PELAQ 516


>gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 924

 Score = 72.3 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 63/182 (34%), Gaps = 22/182 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69
           A     +AVDTET  L P +  L  + LS   G    I I                L  +
Sbjct: 340 AEETGELAVDTETNSLDPHQADLVGISLSSKVGKACYIPIGHKSSKCINKNDVIKKLKPL 399

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D   +KI    +FD  VLF   G+ +  +  T + S +     N+H +    +  LG 
Sbjct: 400 LEDPSVKKIGQNIKFDFIVLFKQ-GIEMTSMEDTMLMSYVLDAGKNRHNMDTLSEIHLGH 458

Query: 130 NI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
                        K    SD       +    YAA D      L  +F++ L+     ++
Sbjct: 459 KTISFKEIVGTGKKEINFSDVEI----ERAKDYAAEDADITFRLYKKFSKNLKLEKMINI 514

Query: 180 AT 181
             
Sbjct: 515 YE 516


>gi|308808822|ref|XP_003081721.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
 gi|116060187|emb|CAL56246.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
          Length = 408

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 31/191 (16%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-----NAPNLVGML 70
           A R  D +AVD E + +M R   + ++Q +  D    I   A G K      +  +  +L
Sbjct: 185 AMREADVVAVDCEGV-MMSRTGPITVLQCATRDKIYLIDIQALGVKAFGARGSGGMRDLL 243

Query: 71  VD-EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA------------------SRLTR 111
              E   K+    R D   LF+ + VR+  V   +I                   ++ T 
Sbjct: 244 ESREAPLKLMFDCRMDSDALFHQYDVRLENVMDVQILDLATRRALGLMIDRVAGIAKCTD 303

Query: 112 TYTNQHGLKDNLKELLGINISK---AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            +  +   +  +   L + + K    ++S  W+   L+++  +YAA DV  L  L  +  
Sbjct: 304 KHLTEA--ETAVAADLKVRVRKLYAVEESQLWAERPLTEDARRYAALDVWLLIKLYDKMK 361

Query: 169 EKLQRLGRSDL 179
             L R  + D 
Sbjct: 362 FDL-RDDKDDW 371


>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
 gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
          Length = 945

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 15/189 (7%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREK 77
           ++  DTET GL P    L  +  S        I   A +  A      L     DE  EK
Sbjct: 373 SVCFDTETTGLNPLTAELVGIAFSWEASKGFYIPFPADKTEAQEIIEQLRPFFEDEAIEK 432

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI------ 131
           I    ++DI VL           F T +A  L      +H ++   +  L          
Sbjct: 433 IGQNLKYDIKVLDKYNVKVKGKCFDTMLAHYLINP-DMRHNMEVLAETYLNYTPVSITEL 491

Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLM 188
              K +   +     L + Q +YAA D    + L  QF  +L+     +L T      L 
Sbjct: 492 IGKKGKNQLNMRDVPLPN-QTEYAAEDADITYQLAQQFKPELEEAKTQELFTDIEIPLLH 550

Query: 189 DRAELDLLG 197
             A+++L G
Sbjct: 551 VLADMELEG 559


>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
 gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
          Length = 926

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 19/189 (10%)

Query: 4   IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I + E D+       +  D +AVDTET  L   R +L  + LS   G    I  A     
Sbjct: 330 IVLTEQDLATWIEKIKSADLVAVDTETTSLDYMRAKLVGISLSTAPGEACYIPFAHDYMG 389

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           AP           L   L D    K+    ++D++VL    G+ +R + F T + S +  
Sbjct: 390 APEQLQPEFALEKLKPYLEDPAFPKVGQNLKYDMSVLAQH-GISLRGITFDTMLESYVLD 448

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165
           +  ++H +       LG    K    +   A  L+  Q+       YAA D      L  
Sbjct: 449 SVASRHDMDSLALNYLGEETIKFADVAGKGAAQLTFNQVALDQAGPYAAEDADITLRLHQ 508

Query: 166 QFTEKLQRL 174
               ++   
Sbjct: 509 TLWPRVAAE 517


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
          Length = 954

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76
           D  ++DTET G  P    L  +  S  +     + + A ++ A      L  ++ +EK  
Sbjct: 382 DFFSLDTETTGTDPITAELVGMSFSFAENQAFYVPVPANREEALAIVKKLKPIIENEKTL 441

Query: 77  KIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           KI    ++D+ VL    GV VR P+F T IA  + +   + HG+    +  L     K +
Sbjct: 442 KIGQNIKYDMLVLGNY-GVEVRGPMFDTMIAHYVLQPELH-HGMDYLAEVYLKYETIKIE 499

Query: 136 ---------QSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                    Q    +  DLS   + +YA  D      L+    ++L     ++L  +   
Sbjct: 500 ELIGPKGKNQK---NMRDLSPTSVYKYACEDADVTLKLKKVLEKELIENNVNELFQTIEM 556

Query: 185 NFLMDRAELDLLG 197
             +   A ++  G
Sbjct: 557 PLVPVLAYMERNG 569


>gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik]
 gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik]
          Length = 600

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 33/198 (16%)

Query: 3   TIRVHEG--DIP--AECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGT-VDIIR 55
           TI V E   D+    +   ++ + +AVDTET GL       R  +VQ    D   V  + 
Sbjct: 14  TINVVEEPEDLDGFRDFIRKHQNCLAVDTETTGLDIYSSTFRCRLVQFGTQDEAWVLPVD 73

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT- 110
            +  Q        +  D+  + +     +D+ VL + FG+++  ++     T+I ++L  
Sbjct: 74  ESPTQLQQETREAL--DKLGKIVMQNASYDLQVLDHCFGIKMEDLWPKVLDTQILAKLVD 131

Query: 111 ----RTYTNQHGLKDNLKELLGIN-----------ISKAQQSSD---WSADDLS-DEQLQ 151
                     H L++ + E +  +           ++K  +++    WS  DL   E L 
Sbjct: 132 PRPYGAGGFGHSLEELIAEFISKDQAKDVKGLMAKLAKEHKTTKAKIWSTIDLFHPEYLT 191

Query: 152 YAASDVVHLHALRLQFTE 169
           YA  D +    +  + T 
Sbjct: 192 YAGMDTIFTARICRKLTR 209


>gi|307103312|gb|EFN51573.1| hypothetical protein CHLNCDRAFT_140064 [Chlorella variabilis]
          Length = 969

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 39/173 (22%)

Query: 16  AARYVDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIA-----AGQKNAPNLVG 68
               +  + +D E    G         ++Q+S       +  +A     AG   A  +V 
Sbjct: 421 DEELLPVLGLDLEWQPDGENSSPP--SLLQISTDAEVWLVDLLALTGREAGDALAAAIVP 478

Query: 69  MLVDEKREKIF-------------HYGRF-------DIAVLFYTFGVRVRPVFCTKIASR 108
           +L  ++  K+              H   F       D++ L+ +  +        +   R
Sbjct: 479 VLSSDRVYKLGCGIASDFRKLARHHPAAFSLARGCLDLSTLWRSCHIE-------QTGKR 531

Query: 109 LTRTYTNQHG---LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            T  Y  + G   L    + +LG  + K+QQ SDW    LS +QL+YAA D  
Sbjct: 532 STAGYKKRVGEVSLSVLAQSVLGKPLDKSQQVSDWGRRPLSSQQLEYAALDAH 584


>gi|255074453|ref|XP_002500901.1| predicted protein [Micromonas sp. RCC299]
 gi|226516164|gb|ACO62159.1| predicted protein [Micromonas sp. RCC299]
          Length = 316

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 31/186 (16%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--- 65
            D   E  AR  +  AVD E + L  R   + + Q++P +G V ++ +A     A +   
Sbjct: 86  ADAMRELIARG-EPCAVDFEGVAL-SRTGAISLAQVAPPNGPVYLVDVACMGAAAFDEGR 143

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL-------TRTYTNQHG 118
           L  +L      K+    R D   L + FGVR+R VF  ++A  L        +      G
Sbjct: 144 LGELLGATHPLKLVFDCRGDADALHHQFGVRMRGVFDVQVAFCLKKDVDHGGKRGAYLMG 203

Query: 119 LKDNLKELLGI------NIS--KAQQSS----------D-WSADDLSDEQLQYAASDVVH 159
           L+  LKE  G+       +   K+  +S          D W+   +  + ++YAA+DV +
Sbjct: 204 LRKALKECPGLDDEARHELDAVKSAGASLFAPELGGSYDAWTKRPMHPDLVKYAAADVTY 263

Query: 160 LHALRL 165
           LH +  
Sbjct: 264 LHHMHR 269


>gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149]
 gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149]
          Length = 933

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 62/181 (34%), Gaps = 29/181 (16%)

Query: 21  DAIAVDTETLGLMPRRD------------RLCIVQL----SPGDGTVDIIRIAAGQ---- 60
             +AVDTET GL                 + C + L    +  D       +A GQ    
Sbjct: 346 GYVAVDTETTGLNDMTADLVGVSLCVEPGKACYIPLIHKAASSDDLFGSDDLAEGQMPLE 405

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +L DE   KI    ++D  +     G+ V P+  T + S       + HG+ 
Sbjct: 406 TALEMLKPVLEDESILKIGQNMKYDAKIFAQ-VGITVAPIDDTMLMSYAMHGGLHGHGMD 464

Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              +  LG         +   + +  +    L+D  + YAA D      L  QF   L R
Sbjct: 465 ALSERYLGHTPLPIKPLLGSGKSAITFDKVPLNDA-VPYAAEDADVTLRLWQQFKPALHR 523

Query: 174 L 174
            
Sbjct: 524 A 524


>gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
 gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
          Length = 984

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 83/243 (34%), Gaps = 57/243 (23%)

Query: 18  RYVDAIAVDTETL-------GLMPRRDRL-CI-VQLSPGD-------------------- 48
           R V  IA+DTET+        +   R RL  + + ++PG+                    
Sbjct: 368 REVPYIAIDTETVIEPGAPFDVDALRSRLVGLSIAVAPGEAYYLPFAHRRDDGSGNLALL 427

Query: 49  ---------------GTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYT 92
                          G  + + +     +A   L  ML D    KI    ++D+ VL  +
Sbjct: 428 AGDTGTGIVGRRINAGAPEPVNLPPFDSDACAPLRAMLEDPSVTKIAQNAKYDLLVL-RS 486

Query: 93  FGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS-------KAQQSSDWSADD 144
            GVRV  V F T +AS +       HGL     E LG  ++       K +    +    
Sbjct: 487 SGVRVAGVGFDTMLASYVLDPGRRSHGLDLLALEQLGHTMTAYDTLVGKGKTQLPFDVAP 546

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWE-NVD 202
           +      Y+  DV     LR +    L       L        +   AE++  G   ++D
Sbjct: 547 VDTA-RDYSCEDVDITMRLRAKLEPMLAEHALLSLFQEIEVPLVSVLAEMEWEGIAIDLD 605

Query: 203 IFS 205
            F+
Sbjct: 606 WFA 608


>gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514]
 gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514]
          Length = 947

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 36/182 (19%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLS------PGDGTVDIIRIAAGQKNAPNLVGML 70
              +     DTET  L  +  R  ++ L+       G            ++       + 
Sbjct: 370 LAGLKTFCFDTETTSLDTKEAR--LIGLAFAFEKQKGFYVAVPADPEEAREILQEFRAVF 427

Query: 71  VDEKREKIFHYGRFDIAVL-FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG- 128
            +E+ +K+ H  ++D+AVL ++  GV  + +F T +A  L      +HG+    +  LG 
Sbjct: 428 ENEQIQKVGHNLKYDLAVLKWHGVGVHGK-LFDTMLAHSLIEPEM-RHGMDYMSEVYLGY 485

Query: 129 --INISK--AQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR 173
             I+I+K    + S         +QL           +YAA D      L  +    L+ 
Sbjct: 486 SPISITKLIGDEKS---------KQLNMADVPVAKVAEYAAEDADVTWQLWEKLEPLLKE 536

Query: 174 LG 175
            G
Sbjct: 537 KG 538


>gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145]
 gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145]
          Length = 924

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----------QKNAPNL 66
            +  + IA DTET  L     +L  V  S  +G    I +A                  L
Sbjct: 339 LKSAEVIAFDTETTSLNYMEAQLVGVSFSIAEGEAVYIPVAHDYVGVEKQVDRDWLLKVL 398

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
             +L D    K+    ++D  +L    G+++R +   T +AS +  +  ++H +     +
Sbjct: 399 KPLLEDSSIAKVGQNLKYDAHILRRY-GIKLRGIKNDTMLASYVFNSVGSRHDMDTLSLQ 457

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG 175
            L     K ++ +   A  L+  Q++      YAA D      L     +K+ + G
Sbjct: 458 YLNHKPIKFEEIAGKGAKQLTFNQIELAQAAPYAAEDADITLRLHHILWDKVHQTG 513


>gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168]
 gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168]
          Length = 926

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 72/216 (33%), Gaps = 25/216 (11%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+I V    I    A+  ++A A D ET  L     R+    LS   GT   + ++    
Sbjct: 334 TSIAVLASYIDEILASEPIEA-AFDCETDSLDRIHTRIVGFSLSRRAGTGIYVPLSVPDA 392

Query: 62  NAPN-----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRL 109
                          L  +          H G+FD  VL        R  +  T +A+ L
Sbjct: 393 LLTQTLIEKQDAFVQLERLFSVPACTLAMHNGKFDYEVLRSNGLAEPRCRIADTMVAAWL 452

Query: 110 TRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                + + L+    + LG+        + K    +D     L    + YAA D      
Sbjct: 453 LDPDRSAYSLEALAADKLGLETIPYTDVVPKGSTFAD---IPLEQA-VPYAAEDADLTWQ 508

Query: 163 LRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
           L   F  +L      DL  +     L   AE++L G
Sbjct: 509 LYRLFLPRLAAAKLGDLFWNLEMPVLPILAEMELDG 544


>gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 896

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 18/186 (9%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   +  +       +   + A DTET  L      L  +     +G    I +      
Sbjct: 301 IVATKEQLDDLVKELKNSSSFAFDTETDSLNTYEANLVGLSFCAKEGRAYYIPLQHRYLG 360

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P          +L  + VD ++ K+ H  +FD  +L       V  V  T I + + ++
Sbjct: 361 VPQQLELEIVLDSLKPVFVDSQKSKVAHNFKFDEKILSKYGVKIVNQVNDTMIMAYVLKS 420

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQ 166
              +H +    KE LGI        +    + L+ +Q+       YAA D      L   
Sbjct: 421 SG-KHDMDSLSKEHLGIEPIAYTTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNH 479

Query: 167 FTEKLQ 172
           F + L+
Sbjct: 480 FLKMLK 485


>gi|109086093|ref|XP_001085031.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Macaca
           mulatta]
          Length = 1432

 Score = 72.3 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  I++       L  +L ++  +K        I      L   F
Sbjct: 96  KVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAIKK----AGVGIEGDQWKLLRDF 151

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A++  +  T    L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLSGLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210

Query: 151 QYAASD 156
            YAA+D
Sbjct: 211 LYAATD 216


>gi|169615583|ref|XP_001801207.1| hypothetical protein SNOG_10950 [Phaeosphaeria nodorum SN15]
 gi|111060329|gb|EAT81449.1| hypothetical protein SNOG_10950 [Phaeosphaeria nodorum SN15]
          Length = 637

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 23/158 (14%)

Query: 34  PRRDRLCIVQLSPGDGTVDI-IRIAAG----QKNAPNLVGMLVDEKREK----IFHYGRF 84
             ++++ ++Q++       I I +  G       AP+L  ++ D    K    I H    
Sbjct: 87  TLQNKIGLIQIASESKIGLIHIGLHPGKTVQDIIAPSLKKLIEDPSIGKLGVGILHA--- 143

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--------QHGLKDNLKELLGINISKAQ- 135
           D A L   F +  R         RL +   N           L   +++ LG  + K   
Sbjct: 144 DFARLRRFFKLSPRGAVELSHLYRLVKFGGNKPEHVSTKMVSLARIVEDQLGHPLYKGDV 203

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT-EKLQ 172
           ++S+WS   LS +Q+ YAA D    + L      ++LQ
Sbjct: 204 RTSNWSK-PLSTDQINYAAGDAYAGYMLYHCMNYKRLQ 240


>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 896

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 18/186 (9%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   +  +       +   + A DTET  L      L  +     +G    I +      
Sbjct: 301 IVATKEQLDDLVKELKNSSSFAFDTETDSLNTYEANLVGLSFCAKEGRAYYIPLQHRYLG 360

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P           L  + VD ++ K+ H  +FD  VL       V  V  T I + + ++
Sbjct: 361 VPQQLELEIVLDILKPIFVDSQKSKVAHNFKFDEKVLSKYGVKIVNQVNDTMIMAYVLKS 420

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQ 166
              +H +    KE LGI        +    + L+ +Q+       YAA D      L   
Sbjct: 421 SG-KHDMDSLSKEHLGIEPIAYTTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNH 479

Query: 167 FTEKLQ 172
           F + L+
Sbjct: 480 FLKMLK 485


>gi|160889123|ref|ZP_02070126.1| hypothetical protein BACUNI_01544 [Bacteroides uniformis ATCC 8492]
 gi|270296116|ref|ZP_06202316.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156861130|gb|EDO54561.1| hypothetical protein BACUNI_01544 [Bacteroides uniformis ATCC 8492]
 gi|270273520|gb|EFA19382.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 207

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 29/176 (16%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           A    +    + +D+ET      R         ++ ++Q+S  +    + R+       P
Sbjct: 36  AVAYLKSCPLLGIDSET------RPSFTKGQIHKVALLQISSEEHCF-LFRLNLTGLTLP 88

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----L 119
            +  +L +    K+    R D  +L              + A    + Y    G     L
Sbjct: 89  VIT-LLENPSVTKVGLSLRDDFMMLHKRAPFE-------QHACIELQEYVRAFGIQDKSL 140

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +     L G  ISK+Q+ S+W A+ L++ Q  YAA+D      +  +  E L+R G
Sbjct: 141 QKIYAILFGEKISKSQRLSNWEAETLTEPQKLYAATDAWACLNIYNKLQE-LKRTG 195


>gi|91092754|ref|XP_973448.1| PREDICTED: similar to GM14514p [Tribolium castaneum]
 gi|270014889|gb|EFA11337.1| hypothetical protein TcasGA2_TC010877 [Tribolium castaneum]
          Length = 237

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 12/173 (6%)

Query: 11  IPAECAARYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           +  E  A  V  +  D E           +  ++Q+SP   T  +I+I+  +K    L  
Sbjct: 63  LADE--AADVLVLGFDVEWPF-SFQTGPGKAALIQISPDLDTCYLIQISDLKKLPKGLSV 119

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           +L   K        + DI  L   F        +     + + +     +  +  ++  +
Sbjct: 120 LLAHPKVRITGVNIKNDIRKLSRDFAGFDVEKNIENCIDSGVLANQILPFQQRWSMERLV 179

Query: 124 KELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
             LL + ISK    + S W    LS EQL YAA+D      L  +  ++  + 
Sbjct: 180 TFLLKMTISKDNKVRMSKWHVSPLSKEQLDYAATDAYASLVLYNELKKREAQE 232


>gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
          Length = 924

 Score = 72.0 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 22/182 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69
           A     +A+DTET  L   +  L  + LS   G    I I          +     L  +
Sbjct: 340 AEEAGELAIDTETSSLDAHQTDLVGISLSTKIGKACYIPIGHKFKGCLKKETVIKKLKPL 399

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK-ELLG 128
           L D+  +KI    +FD  VL+   G+ +  +  T + S +     N+H +    +  L  
Sbjct: 400 LEDKSVKKIGQNIKFDFIVLYKH-GINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQH 458

Query: 129 INIS---------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             IS         K    SD    +L     +YAA D    + L   F++ L+    +++
Sbjct: 459 KTISFKEIVGTGKKEINFSD---VELDKAM-EYAAEDADITYRLYKIFSKNLKLEKLTNI 514

Query: 180 AT 181
             
Sbjct: 515 YE 516


>gi|242277603|ref|YP_002989732.1| 3'-5' exonuclease [Desulfovibrio salexigens DSM 2638]
 gi|242120497|gb|ACS78193.1| 3'-5' exonuclease [Desulfovibrio salexigens DSM 2638]
          Length = 198

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 11/167 (6%)

Query: 8   EGDIPAECA-ARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           E D+PA        + +  DTE        +       ++QL+  D  V ++ +      
Sbjct: 34  EEDVPAAIEELSRCELLGFDTETRPVFRKGVSYPP--SLIQLATED-CVFLLHLNHIS-L 89

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           + ++  +L      K       D+  L        +        +R     TN  GL++ 
Sbjct: 90  SDHIKEVLSSADIIKTGVAVINDVKELRDVSPFEGKGFVDLGDLARSLEMQTN--GLRNL 147

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
              LLG  ISK  Q S+W   +L+ +Q+ YAA+D      + L+F +
Sbjct: 148 AANLLGFRISKGVQCSNWGRKELTPQQITYAATDAWVSREIYLKFQD 194


>gi|152995426|ref|YP_001340261.1| 3'-5' exonuclease [Marinomonas sp. MWYL1]
 gi|150836350|gb|ABR70326.1| 3'-5' exonuclease [Marinomonas sp. MWYL1]
          Length = 195

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 12/166 (7%)

Query: 1   MTTIRVHEGDIPAECAARYVD---AIAVDTETLGLMPRR-----DRLCIVQLSPGDGTVD 52
           ++ I + E ++ AE A + ++   ++  DTE       +         ++QL+  +    
Sbjct: 20  LSDIHIVENEVDAEQAIKALENETSLGFDTE--SKPIFQKGQVSPGPSLIQLAT-ESKAF 76

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           +         A     +L + K +KI    + D   L     + +       +  +    
Sbjct: 77  LFPTRFPSAVAAA-KQILSNPKIKKIGFGIKDDNKELRNKLDIDICNTQDLSVTLKQLAG 135

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
             N  G +  +  +LG  + K  Q S+W A  L + Q+ YAA+D  
Sbjct: 136 EKNTIGARAAVAMVLGKRLGKGAQKSNWGAYPLKEHQILYAANDAH 181


>gi|115463391|ref|NP_001055295.1| Os05g0357100 [Oryza sativa Japonica Group]
 gi|55168078|gb|AAV43946.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578846|dbj|BAF17209.1| Os05g0357100 [Oryza sativa Japonica Group]
 gi|215716995|dbj|BAG95358.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218196622|gb|EEC79049.1| hypothetical protein OsI_19612 [Oryza sativa Indica Group]
 gi|222631262|gb|EEE63394.1| hypothetical protein OsJ_18206 [Oryza sativa Japonica Group]
          Length = 580

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 25/165 (15%)

Query: 18  RYVDAIAVDTETLGLMPRRDR------LCIVQLSPGDGTVDIIRIAAGQKNAPN-----L 66
                I VD E     P  ++      + I+Q++  D    I  +    ++ P       
Sbjct: 391 EACKIIGVDCE---WKPNFEKGSKPNKVSIIQIAS-DKKAFIFDLIKLYEDDPKVLDSCF 446

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKD 121
             ++      K+ +  + D+  L  ++G          +   +   +L +  T   GL  
Sbjct: 447 RRIMCSSNILKLGYNLQCDLHQLSQSYGELKCFQSYEMLLDIQ---KLFKGTTG--GLSG 501

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
             K++LG  ++K +++S+W    L+  Q +YAA D V L  +   
Sbjct: 502 LSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHH 546


>gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus influenzae 10810]
          Length = 935

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 358 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 417

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 418 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 475

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 476 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 527


>gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
 gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
          Length = 931

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 70/208 (33%), Gaps = 30/208 (14%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR----------------IAAGQK 61
           R +  +AVDTET  L   R  L  + L    G    I                 +A GQ 
Sbjct: 341 RAIGHVAVDTETTSLNEMRAELVGISLCVEAGIACYIPLIHKAAASDDLFGSADLAEGQL 400

Query: 62  N----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
           +       L  +L D    KI    ++D  +     GV+V P   T + S       + H
Sbjct: 401 DTNVVLDLLKPVLEDPAVLKIGQNMKYDAKIFARY-GVKVAPFDDTMLMSYAQNAGKHNH 459

Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            +    +  LG +       +   + +  +    ++D  ++YAA D      L       
Sbjct: 460 SMDSLSERYLGHSPISIKTLLGTGKSAITFDKVPVADA-VKYAAEDADVTLRLWQFLGPL 518

Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLG 197
           L     + +        +   AE+++ G
Sbjct: 519 LHIEKVTKVYERMERPLVPVLAEMEMHG 546


>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
 gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
          Length = 968

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 63/201 (31%), Gaps = 33/201 (16%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+       P   AAR    +A+DTET  L      L  + L+   G    + +  G   
Sbjct: 359 TVTELAALQPFLDAARAGGLLAIDTETDSLDALNANLVGLSLAVAPGRACYVPLRHGPPP 418

Query: 63  AP---------------------NLVGMLVDEKREKIFHYGRFDIAVLFY--TFGVRVRP 99
                                   L  +L D    KI H  ++D+ VL       + + P
Sbjct: 419 GSGDLLAEAPAAPAQLSQAEVVEALRPLLADPAVLKILHNAKYDLEVLARPEHGALDITP 478

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSAD-DLSDEQLQ---- 151
           V  T + S       + HG+ +     LG   I   +   +    A    S   L     
Sbjct: 479 VDDTMLISYSMDAGRHGHGMDELSLRHLGHRPIPFDEVTGTG--RARIPFSQVALDKATA 536

Query: 152 YAASDVVHLHALRLQFTEKLQ 172
           YAA D      L      +L+
Sbjct: 537 YAAEDADVTLRLWQALRPRLR 557


>gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
 gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
          Length = 941

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 30/205 (14%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR----------------IAAGQKNAP 64
             +AVDTET  L   R  L  V L    G    I                 +A GQ +  
Sbjct: 354 GYVAVDTETTSLNEMRAELVGVSLCVTAGEACYIPLTHKSGAADDLFGDDALAEGQMDFE 413

Query: 65  N----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  ML D+   KI    ++D  +     G+ V P+  T + S       ++HG+ 
Sbjct: 414 ECLAILKPMLEDDSILKIGQNMKYDAKIFKR-VGIDVDPIDDTMLMSYAMNAGLHRHGMD 472

Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              ++ LG         +   + +  ++   + D  ++YAA D      L   F  +L R
Sbjct: 473 VLSEQYLGHTPIPIKPLLGAGKSAKTFNRVPVEDA-VRYAAEDADITLRLWEVFKPQLHR 531

Query: 174 LGRSDLATS-CCNFLMDRAELDLLG 197
              + +  +     +   A++++ G
Sbjct: 532 KQVTSVYETMERPLVPVLAKMEMHG 556


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 29/192 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRR------------DRLCIVQL-----SPGD--GTVDIIRIA 57
           A     +AVDTET  L P               R C + L       GD  G   +++  
Sbjct: 401 ATDAGVVAVDTETTSLDPMSCELVGVSLAITPGRACYIPLQHREPGDGDLFGGAALLQGQ 460

Query: 58  AGQKNA-PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                A   L  +L D+   KI H  ++D+ VL    GV V P+  T + S    T  N 
Sbjct: 461 IPLDKAIATLKPLLEDDAVLKIAHNMKYDLLVLARY-GVDVAPIEDTMLISYTLDTGRNN 519

Query: 117 HGLKDNLKELLGIN------ISKAQQ-SSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           HGL +   + LG        ++ + +    ++   L     +YA  D      L      
Sbjct: 520 HGLDELTLKHLGHENIPFSAVAGSGRNFIGFARVALDRA-TEYATEDADVTLRLWRALKP 578

Query: 170 KLQRLGRSDLAT 181
           +L     +++  
Sbjct: 579 RLAAEHMTNVYE 590


>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
 gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
          Length = 950

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 71/194 (36%), Gaps = 31/194 (15%)

Query: 7   HEGDIPAECAARYVDA------IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +E  +     AR+V+       IAVDTET GL      L  V  +  +G    + +    
Sbjct: 354 YENILTEADLARWVEKLSAEKLIAVDTETDGLDYMSANLVGVSFALENGEAAYLPLHLDY 413

Query: 61  KNAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
             AP           L  +L +    K+    +FD+ +     G+ +R + F T + S  
Sbjct: 414 LGAPKTLEKSTALAALKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIEFDTMLLSYT 472

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHL 160
             + T +H + D  K  LG          D      + L+  Q+      +YAA D    
Sbjct: 473 LDS-TGRHNMDDLAKRYLGHQ---TIGFEDIAGKGKNQLTFNQIPLEQAGEYAAEDADVT 528

Query: 161 HALRLQFTEKLQRL 174
             L+     KLQ  
Sbjct: 529 MKLQQVLWGKLQSQ 542


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 25/194 (12%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----MLVDEKREK 77
           ++  DTET GL P    L  +  S        I     Q  A  L+        DEK EK
Sbjct: 374 SVCFDTETTGLNPLTAELVGIAFSWEASKGFYIPFPEDQDQAQELIEQLRPFFEDEKIEK 433

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130
           I    ++DI VL     +     F T +A  L      +H +    +  L          
Sbjct: 434 IGQNLKYDIKVLRKYNLIIKGAYFDTMLAHYLINP-DMRHNMDVLAETYLNYTPISITEL 492

Query: 131 ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
           I K         + LS      ++Q +YA  D    + L   F  +L+     +L     
Sbjct: 493 IGKK------GKNQLSMRQVPIEKQTEYAVEDADITYQLASHFKPELKDAKTEELFNDIE 546

Query: 184 CNFLMDRAELDLLG 197
              L   A+++L G
Sbjct: 547 IPLLSVLADMELEG 560


>gi|294953663|ref|XP_002787876.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239902900|gb|EER19672.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 352

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 46/211 (21%)

Query: 22  AIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKNA--------PNLV 67
           A+AVD    GL   RD      +LC+   S    +V ++ I     +A         +L 
Sbjct: 131 AMAVD--FEGLNLSRDGAMSLAQLCL---SSDPKSVYVVDITRLGFHAFHTTTHTGTSLK 185

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS---RLTRTYTNQ--HGL-KD 121
            ++ D + EK+F+  R D+  L+Y F V  + VF  ++A    R  R  T +   GL K 
Sbjct: 186 SIMEDARIEKVFYDPRNDVDALYYQFNVAPQNVFDLQLAEVALRRARGLTVRYVIGLFKC 245

Query: 122 NLK--ELL---------------GINI--SK-AQQSSDWSADDLSDEQLQYAASDVVHLH 161
            +   EL                G  +   K       ++   L    + YA+ DV +L 
Sbjct: 246 LIAQPELFTQPAMMDFARRINDAGKALYEPKHGGSFKVFTQRPLHTSIIVYASHDVRYLL 305

Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
            L+  FT++L      DL    C    +RA+
Sbjct: 306 PLKDLFTKQLNEAS-DDLYERVCKVSAERAQ 335


>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 926

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 67/196 (34%), Gaps = 37/196 (18%)

Query: 10  DIPAE----CAARYVDAIAVDTETLGLMPRRDRL------------CIVQL--SPGDGTV 51
           D+ A       A     +  DTET GL P R +L            C + +  S G+   
Sbjct: 322 DLAALDRWVAQASKAGLVGFDTETTGLDPLRAKLVGVSLALAPGRACYIPVMHSSGEAQG 381

Query: 52  DII--------RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
           D++        ++         L  +L D    K+ H  ++D+ V+    G+ ++    T
Sbjct: 382 DLLGGPSADAPKLIPAADILARLKPLLADPAVLKVGHNIKYDMQVM-AGLGLAIQSFDDT 440

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINI--------SKAQQSSDWSADDLSDEQLQYAAS 155
            + S +    ++ HGL +     LG           S   Q + +    L      YAA 
Sbjct: 441 MLLSYVLDGASHGHGLDELCLLHLGHRNISFAEVCGSGRNQVT-FDRVPLDKA-CAYAAE 498

Query: 156 DVVHLHALRLQFTEKL 171
           D      L      +L
Sbjct: 499 DADMTLRLHGLLKPRL 514


>gi|195155440|ref|XP_002018612.1| GL25861 [Drosophila persimilis]
 gi|194114765|gb|EDW36808.1| GL25861 [Drosophila persimilis]
          Length = 625

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 44/201 (21%)

Query: 10  DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54
           D+  +C                 +    I +D+E +  +    +LC++Q++       I 
Sbjct: 402 DLADDCLITVDTATQFDLMLGHLQREHIIYMDSEWVQNVCGESQLCLLQIATVRNVYLID 461

Query: 55  RIAAGQKNAPNLVGM----LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI----- 105
            +A     A +   +      +    K+      D+ VL  +  +++R     ++     
Sbjct: 462 CLARQSITADHWRALGADVFNNMNILKVGFSMYSDLTVLQRSLPLQLRL----QLSHHYL 517

Query: 106 --------------ASRLTRTYTNQHG--LKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
                         A RL     N+ G  L D     LG  ++K+ Q S+W+   L  EQ
Sbjct: 518 DLRTLWLELKKQRYAIRLPFGNVNRAGDALSDLSLVCLGKKLNKSNQCSNWANRPLRREQ 577

Query: 150 LQYAASDVVHLHALRLQFTEK 170
           + YAA D   L  +      +
Sbjct: 578 ILYAAIDARCLMLIYNTLLNR 598


>gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
 gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
          Length = 937

 Score = 72.0 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 68/207 (32%), Gaps = 29/207 (14%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58
           R    +A+DTET  L   R  L  + L    G+   I +                     
Sbjct: 347 RERGHVAIDTETTSLDEMRAELVGISLCVEAGSACYIPLGHRAGGGDLFGSLDLVADQIP 406

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  L  +L D+   KI    ++D  +     G+RV P+  T + S       + HG
Sbjct: 407 LDLALSMLKPVLEDDAILKIGQNMKYDAKIFARH-GIRVAPIDDTMLMSYAMHAGRHGHG 465

Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           + +     LG         +   +    +    +    + YAA D      L   F  +L
Sbjct: 466 MDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVDQA-VCYAAEDADVTLRLWRLFKPQL 524

Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLG 197
            R   + +  +     +   AE+++ G
Sbjct: 525 HRARVTTVYETLERPLVPVLAEMEMAG 551


>gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
 gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
          Length = 953

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 68/195 (34%), Gaps = 27/195 (13%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREK 77
           ++  DTET GL P    L  +  S   G    +     ++ A      L      E  +K
Sbjct: 381 SVCFDTETTGLNPLTAELVGIAFSWETGKGFYLPFPEDKQEAQAIIEALRCFFEAENIQK 440

Query: 78  IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------ 130
           I    ++DI VL     V V+ P+F T +A  L      +H +    +  L         
Sbjct: 441 IGQNLKYDIKVLAKY-NVEVKGPLFDTMLAHYLINP-DMRHNMDVLAETYLNYTPVSITE 498

Query: 131 -ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
            I K         + LS      D+Q +YA  D      L+  F ++L       L    
Sbjct: 499 LIGKK------GKNQLSMRDVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFDDI 552

Query: 183 CCNFLMDRAELDLLG 197
               L   A ++L G
Sbjct: 553 EVPLLRVLAAMELEG 567


>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
 gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
          Length = 950

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 67/197 (34%), Gaps = 25/197 (12%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLV 71
                   AVDTET  L      L  +  S   G    +       +A      L  +L 
Sbjct: 372 LLENSGGFAVDTETTSLDTFTAELAGISCSVKPGEAFFVYFGTPGLDAKTTVARLKPLLE 431

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
           + +  K     ++DI VL    GV + PV F T +AS +      +H L D     LG  
Sbjct: 432 NPEIPKTGQNLKYDILVLKKY-GVELAPVGFDTMLASYVLNPEA-RHNLDDMAALYLGRQ 489

Query: 131 ISKAQQSSDWSA----------DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            +K  +                  LSD    YA  D      LR    E+L++    +L 
Sbjct: 490 TTKYTELVGTGKQTIGIFEVEPRKLSD----YACQDADIALRLRYSLEEQLEKT--PELL 543

Query: 181 TSC--CNFLMDRAELDL 195
             C    F + R   D+
Sbjct: 544 EVCRKLEFPLVRVLADM 560


>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
          Length = 924

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 70/211 (33%), Gaps = 23/211 (10%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAA 58
           I  +   +    A     + +A+DTET           +V ++     G G      +  
Sbjct: 335 IVRNRQQLDELVAHLDGFERLAIDTETTSTEAMWA--SLVGIAFSWEKGQGYYVPTPLPD 392

Query: 59  GQKNAPNLVGM--LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
           G      L  +  ++   + K+    ++D+ VL         P F T +A  L       
Sbjct: 393 GTPTETVLERLAPILRRAQRKVGQNLKYDLVVLARHGVQVPPPYFDTMVAHYLIAPE-EP 451

Query: 117 HGLKDNLKELLGINI--------SKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQF 167
           H L    ++ L   +        S   Q S     D+S +++  YA  D      L    
Sbjct: 452 HNLDVLARQYLRYQMVSITELIGSGRDQKS---MRDVSIDEVGPYACEDTDIALQLADVL 508

Query: 168 TEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
             +L R G   +A       +   A+++  G
Sbjct: 509 AAELDRHGLRHIAEEMEFPLIEVLADMERTG 539


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 75/194 (38%), Gaps = 21/194 (10%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
            + +++DTET G  P    L  +  S  +     + + A ++           +  +EK 
Sbjct: 378 SEILSIDTETTGTEPMDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKS 437

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ +L    GV+V+  +F T +A  + +    +H +    +  L    I+I
Sbjct: 438 MKVGQNIKYDMIILQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 495

Query: 132 SK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
            K        Q    +  DLS E + +YA  D      L+    ++L+  G   L     
Sbjct: 496 DKLIGARGKNQK---NMRDLSPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEIE 552

Query: 184 CNFLMDRAELDLLG 197
              +     ++  G
Sbjct: 553 MPLVPVLVNIESNG 566


>gi|332240842|ref|XP_003269596.1| PREDICTED: Werner syndrome ATP-dependent helicase [Nomascus
           leucogenys]
          Length = 1433

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  I++       L  +L ++  +K        I      L   F
Sbjct: 96  KVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A++  +  T    L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210

Query: 151 QYAASD 156
            YAA+D
Sbjct: 211 LYAATD 216


>gi|159464515|ref|XP_001690487.1| hypothetical protein CHLREDRAFT_169205 [Chlamydomonas reinhardtii]
 gi|158279987|gb|EDP05746.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 185

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT-EKLQR 173
           E+LG  + K QQ SDW+A  LS+ QL YAA+DV  L ++    T ++L+ 
Sbjct: 34  EVLGKPLDKEQQRSDWAARPLSESQLAYAAADVACLVSVFDALTSDELEE 83


>gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby]
 gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby]
          Length = 896

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 22/199 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68
                   +DTET  L   +  L  + L+  +     I +A           +    L  
Sbjct: 317 LEQSQQFCIDTETTNLDVMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKP 376

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L +    KI    ++D +VL    G+ ++ + + T + S +  +   +H +     + L
Sbjct: 377 ILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYL 435

Query: 128 GINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178
           G    K     D     A  L  +Q+       YAA D      L  +    L    R+ 
Sbjct: 436 GY---KTISYEDVAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKLYPMLDEPLRNV 492

Query: 179 LATSCCNFLMDRAELDLLG 197
           L       L   A++++ G
Sbjct: 493 LHDIEMPLLTVLADMEIHG 511


>gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
          Length = 949

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 19/194 (9%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEK 74
              ++  DTET GL P    L  +  S   G    I     ++ A      L     +  
Sbjct: 375 KQSSVCFDTETTGLDPLVAELVGIAFSWEAGKGYYIPFPESKEEAQALIEELRPFFENTA 434

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130
            EKI    ++DI VL          +F T +A  L      +H +    +  L       
Sbjct: 435 IEKIGQNLKYDIKVLAKYNVKVKGKLFDTMLAHYLINP-DMRHNMDVLAETYLNYTPVSI 493

Query: 131 ---ISKA--QQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
              I K    Q S     D+S D+Q +YA  D      L+  F ++L   G   L     
Sbjct: 494 TELIGKKGKNQKS---MRDVSVDDQTEYAVEDADITLQLKQHFEKELDEAGTRKLFDDIE 550

Query: 184 CNFLMDRAELDLLG 197
              L   A +++ G
Sbjct: 551 IPLLRVLAAMEVEG 564


>gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510]
 gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510]
          Length = 972

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 66/189 (34%), Gaps = 40/189 (21%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--------AAGQKNAPN--- 65
           AR    +AVDTET  L P    L  V LS   G    I +        AAGQ +      
Sbjct: 378 ARETGRLAVDTETDSLTPATATLVGVSLSTEPGIACYIPLAHKAEGSAAAGQLDFDAPPP 437

Query: 66  ------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                       L  +L D    KI H  +FD  +     G+ V PV  + + S +    
Sbjct: 438 PAQIPAAEAMAILKDVLEDPSVLKIGHNFKFDHQLFGRN-GITVSPVDDSMLISYVLEGG 496

Query: 114 TNQHGLKDNLK-----------ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           ++ HG+ +  +           E+ G    K Q + D     L    L YAA D      
Sbjct: 497 SHGHGMDELAELHLAYTPIPFKEVCGTG--KNQITFD--RVPLDKA-LAYAAEDADITLR 551

Query: 163 LRLQFTEKL 171
           L      +L
Sbjct: 552 LWTLLKPRL 560


>gi|317480691|ref|ZP_07939778.1| 3'-5' exonuclease [Bacteroides sp. 4_1_36]
 gi|316903198|gb|EFV25065.1| 3'-5' exonuclease [Bacteroides sp. 4_1_36]
          Length = 207

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 29/176 (16%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           A    +    + +D+ET      R         ++ ++Q+S  +    + R+       P
Sbjct: 36  AVAYLKSCPLLGIDSET------RPSFTKGQIHKVALLQISSEEHCF-LFRLNLTGLTLP 88

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----L 119
            +  +L +    K+    R D  +L              + A    + Y    G     L
Sbjct: 89  VIT-LLENPSVTKVGLSLRDDFMMLHKRAPFE-------QHACIELQEYVRAFGIQDKSL 140

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +     L G  ISK+Q+ S+W A+ L++ Q  YAA+D      +  +  E L+R G
Sbjct: 141 QKIYAILFGEKISKSQRLSNWEAETLTEPQKLYAATDAWACLNIYNRLQE-LKRTG 195


>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
 gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
          Length = 930

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 353 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLQQATEYAAEDADVTMKLQQALWLKLQEE 522


>gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 743

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 166 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 225

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 226 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 283

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 284 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 335


>gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319]
 gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319]
          Length = 920

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 78/206 (37%), Gaps = 18/206 (8%)

Query: 7   HEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-- 63
           +E D+   C        +++DTET         L  +  S  +     + I   ++ A  
Sbjct: 333 NEADLHRLCELFLTKKTLSLDTETTSTDAISAELVGLSFSVEEKEAYYVPIPENREEALK 392

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
                  +  +E   K+    ++D  VL          +F T IA  L +    +H +  
Sbjct: 393 RVAIFKPVYENESILKVGQNIKYDYEVLSNYGVKLKGAMFDTMIAHYLIQPEL-RHNMDY 451

Query: 122 NLKELLG---INI-----SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQ 172
             + LLG   I+I     SK ++  +    DLS   + +YAA D      L+     KL+
Sbjct: 452 MAETLLGYQTIHIEELLGSKGKKQKN--MRDLSPTDIYEYAAEDADITLRLKNVLAPKLK 509

Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197
            L   +L  S     +   A+++L G
Sbjct: 510 ELNVEELFWSIEMPLVRVLADMELTG 535


>gi|237721388|ref|ZP_04551869.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449184|gb|EEO54975.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 219

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 21/175 (12%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    I +D+E             ++ ++Q+S  +    + R+       P LV 
Sbjct: 36  AVAYLQSRAVIGIDSETRPSFTKGQSH--KVALLQISSEE-CCFLFRLNMTGLTQP-LVD 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L +    K+    + D  +L         P   T+ +    + Y  Q G     L+   
Sbjct: 92  LLENPAVIKVGLSLKDDFMMLHKR-----APF--TQQSCIELQDYVRQFGIQDKSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L    ISK+Q+ S+W AD LSD Q QYAA+D      +     ++L++ G  +
Sbjct: 145 AILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYN-LLQELKQTGDWE 198


>gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens]
 gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens]
          Length = 896

 Score = 71.6 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 22/199 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68
                   +DTET  L   +  L  + L+  +     I +A           +    L  
Sbjct: 317 LEQSQQFCIDTETTNLDVMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKP 376

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L +    KI    ++D +VL    G+ ++ + + T + S +  +   +H +     + L
Sbjct: 377 ILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYL 435

Query: 128 GINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178
           G    K     D     A  L  +Q+       YAA D      L  +    L +  R+ 
Sbjct: 436 GY---KTISYEDVAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKLYPMLDKPLRNV 492

Query: 179 LATSCCNFLMDRAELDLLG 197
           L       L   A++++ G
Sbjct: 493 LHDIEMPLLTVLADMEMHG 511


>gi|72388613|gb|AAZ67949.1| At5g24340 [Arabidopsis thaliana]
 gi|72388615|gb|AAZ67950.1| At5g24340 [Arabidopsis thaliana]
 gi|72388617|gb|AAZ67951.1| At5g24340 [Arabidopsis thaliana]
 gi|72388619|gb|AAZ67952.1| At5g24340 [Arabidopsis thaliana]
          Length = 163

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            L    KE+L I++SK  Q SDWS   L++EQ  YAA+D   L  +   F   L  
Sbjct: 29  SLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVE 84


>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
 gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
          Length = 930

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 353 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522


>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
 gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
          Length = 985

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGMLVD 72
           IAVDTET GL      L  V  +  +G    + +      AP           L  +L +
Sbjct: 411 IAVDTETDGLDYMSANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKSTALAALKPILEN 470

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
               K+    +FD+ +     G+ +R + F T + S    + T +H + D  K  LG   
Sbjct: 471 PNIGKVGQNLKFDMTIFARN-GIELRGIEFDTMLLSYTLDS-TGRHNMDDLAKRYLGHQ- 527

Query: 132 SKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                  D      + L+  Q+      +YAA D      L+    EKL+  
Sbjct: 528 --TIGFEDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTMKLQQVLWEKLKSQ 577


>gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
          Length = 924

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 22/182 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69
           A     +A+DTET  L   +  L  + LS   G    I I          +     L  +
Sbjct: 340 AEEAGELAIDTETSSLDAHQTDLVGISLSTKIGQACYIPIGHKFKGCLKKETVIKKLKPL 399

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK-ELLG 128
           L D+  +KI    +FD  VL+   G+ +  +  T + S +     N+H +    +  L  
Sbjct: 400 LEDKSVKKIGQNIKFDFIVLYKQ-GINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQH 458

Query: 129 INIS---------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             IS         K    SD    +L     +YAA D    + L   F++ L+    +++
Sbjct: 459 KTISFKEIVGTGKKEINFSD---VELDKAM-EYAAEDADITYRLYKIFSKNLKLEKLTNI 514

Query: 180 AT 181
             
Sbjct: 515 YE 516


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 71/219 (32%), Gaps = 39/219 (17%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA-------- 57
             AR    +A DTET  L   +  L  + ++  D   D          + ++        
Sbjct: 126 ADARDTGLVAFDTETTSLDAMQAELVGISMAIADNVADPSGTKIRAAYVPLSHKNGVGDL 185

Query: 58  ----------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                       +   P L  +L DE   K+    ++D  +L   +G+  +    T + S
Sbjct: 186 LGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETKSFDDTMLIS 244

Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159
            +    T  HG+    ++ LG      K    S     +++      D    YAA D   
Sbjct: 245 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GRANVTFDLVDIDRATHYAAEDADV 302

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L L    +L   G + +        L   A ++  G
Sbjct: 303 TLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 341


>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
 gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
          Length = 920

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 25/198 (12%)

Query: 18  RYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA----PNLVGML 70
           R    +++DTET         L   C    +  +     + I   ++ A         + 
Sbjct: 345 RTKRILSLDTETTSTNAIDAELVGLC---FAVEEHKAFYVAIPNDREEALQYVNIFKPVY 401

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-- 128
            D    KI    ++D  VL          +F T +A  + +   + H +    + LL   
Sbjct: 402 EDPSILKIGQNLKYDYEVLKNYGVTLGGKMFDTMLAHYVIQPELH-HNMDYMAETLLHYK 460

Query: 129 -INISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            I+I +        Q S     DL  + + +YAA D      L+     KL+  G  +L 
Sbjct: 461 TIHIDELIGPRGKHQKS---MRDLDPKDVYEYAAEDADITLQLKNVLEPKLKETGTENLF 517

Query: 181 TS-CCNFLMDRAELDLLG 197
            +     +   A+++L G
Sbjct: 518 WNIEMPLVPVLADMELNG 535


>gi|114619614|ref|XP_528104.2| PREDICTED: Werner syndrome ATP-dependent helicase [Pan troglodytes]
          Length = 1432

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  I++       L  +L ++  +K        I      L   F
Sbjct: 96  KVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A++  +  T    L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210

Query: 151 QYAASD 156
            YAA+D
Sbjct: 211 LYAATD 216


>gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b]
 gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b]
          Length = 993

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 65/206 (31%), Gaps = 29/206 (14%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+   E        A     +A+DTET  L P    L  V L+   G    I +      
Sbjct: 384 TVTTLERLDAWIAEAFAAGFVAMDTETTSLDPMSCDLVGVSLATAPGRACYIPLRHVASA 443

Query: 63  APNL--------------------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102
            P+L                      +L      KI    ++D+ VL    GV V P+  
Sbjct: 444 GPDLLGGGEPPPAQIPFDDAIARLKPLLEARSVLKIAQNMKYDLLVLAC-CGVDVAPIED 502

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGIN-----ISKAQQSS--DWSADDLSDEQLQYAAS 155
           T + S    +  N HGL +  K+ LG              S   ++   L     +YAA 
Sbjct: 503 TMLISYALDSGRNNHGLDELAKKHLGHECIPFAAVAGSGRSFIGFARVPLDKA-TEYAAE 561

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLAT 181
           D      L      +L     + +  
Sbjct: 562 DADVALRLWRVLKPRLAAEHMTSVYE 587


>gi|164656377|ref|XP_001729316.1| hypothetical protein MGL_3351 [Malassezia globosa CBS 7966]
 gi|159103207|gb|EDP42102.1| hypothetical protein MGL_3351 [Malassezia globosa CBS 7966]
          Length = 348

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 22/201 (10%)

Query: 5   RVHEGDIPAECAARYV--DAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIA 57
            + +  +P   A        + +D E      +G      +  + QL+  +  + +I ++
Sbjct: 109 HLVDKLLPPALAHTNTLGGIVGLDLEWNFGLRMG------KTAVAQLATAND-IFVIHLS 161

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQ 116
             ++    LV ML D    K     R D++ L   FG+     +  ++IA +L     N 
Sbjct: 162 QMKRLPDTLVAMLQDPHILKSGVAVRQDLSKLQRDFGIETCGALELSRIAWKLDPERWNG 221

Query: 117 ----HGLKDNLKELLGINISKAQQS-SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                 L+D     LG +++K     S W+   L++EQ+ YAASD      L       L
Sbjct: 222 RRALISLRDLCAAYLGCDLAKGPTRTSSWTQVPLTNEQITYAASDAYVSLELAHAML--L 279

Query: 172 QRLGRSDLATSCCNFLMDRAE 192
               +  +++     L+    
Sbjct: 280 DAHAKRPMSSEDAQKLLTEVS 300


>gi|306921707|dbj|BAJ17933.1| Werner syndrome, RecQ helicase-like [synthetic construct]
          Length = 1432

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  I++       L  +L ++  +K        I      L   F
Sbjct: 96  KVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A++  +  T    L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210

Query: 151 QYAASD 156
            YAA+D
Sbjct: 211 LYAATD 216


>gi|281210039|gb|EFA84207.1| 3'-5' exonuclease domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 315

 Score = 71.6 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 38/158 (24%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG--QKNAPNLVGMLVDEKREKIF 79
            IA+D E L +  ++  + +VQ+    G V +  +     Q     L  +L      KI 
Sbjct: 156 VIAIDVEGLEMG-KQGEISLVQVGLMSGRVFLFDVLRLGQQLFDRGLRQILESNNILKIV 214

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           H  R D  +L++                        +H      +  + +     QQ ++
Sbjct: 215 HDCRRDSEILYH------------------------RH------QRAVDLKYEARQQFTE 244

Query: 140 -----WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                W    LS   + Y+A D + LH +    + +LQ
Sbjct: 245 NPAEIWGKRPLSKLMIDYSALDAIVLHPIYNVISPQLQ 282


>gi|289671330|ref|ZP_06492405.1| ribonuclease D [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 72

 Score = 71.2 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 1  MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
          M     H  ++     A     I +DTE +       +L +VQ++ G+  + I  +  G 
Sbjct: 1  MPHWITHPSELTDRLQAARPSRIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPGM 60

Query: 61 KNAPNLVGMLVDE 73
            A  L   L   
Sbjct: 61 NEA--LKEWLTPP 71


>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
 gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
 gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
 gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
 gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
          Length = 930

 Score = 71.2 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVG 68
               IAVDTET  L      L  +  +  +G    + +     +AP           +  
Sbjct: 352 AAKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKP 411

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  L
Sbjct: 412 ILENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYL 469

Query: 128 GINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           G      +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 470 GHETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522


>gi|125987467|ref|XP_001357496.1| GA21642 [Drosophila pseudoobscura pseudoobscura]
 gi|54645828|gb|EAL34566.1| GA21642 [Drosophila pseudoobscura pseudoobscura]
          Length = 625

 Score = 71.2 bits (174), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 44/201 (21%)

Query: 10  DIPAECA---------------ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII 54
           D+  +C                 +    I +D+E +  +    +LC++Q++       I 
Sbjct: 402 DLADDCLITVDTATQFDLMLGHLQREHIIYMDSEWVQNVCGESQLCLLQIATVRNVYLID 461

Query: 55  RIAAGQKNAPNLVGM----LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI----- 105
            +A     A +   +      +    K+      D+ VL  +  +++R     ++     
Sbjct: 462 CLARQSITADHWRALGADVFNNMNILKVGFSMYSDLTVLQRSLPLQLRL----QLSHHYL 517

Query: 106 --------------ASRLTRTYTNQHG--LKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
                         A RL     N+ G  L D     LG  ++K+ Q S+W+   L  +Q
Sbjct: 518 DLRTLWLELKKQRYAIRLPFGNVNRAGDALSDLSLVCLGKKLNKSNQCSNWANRPLRRDQ 577

Query: 150 LQYAASDVVHLHALRLQFTEK 170
           + YAA D   L  +      +
Sbjct: 578 ILYAAIDARCLMLIYNTLLNR 598


>gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
 gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
          Length = 915

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 17/196 (8%)

Query: 2   TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
            TI   +  +       R   AIA+D ET    P   RL  + L+        + +    
Sbjct: 312 RTIVRFDNQLGDLLEELRSAPAIALDVETTSTDPMTARLVGIALATSGQRSFYVPVNHAN 371

Query: 61  KNA--------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            +           L  +L D       H+G++D  VL      R R  F T IA+ L   
Sbjct: 372 DDEQLDADEVREALSPLLADPNTVVYAHHGKYDALVLERAGYPRPRIAFDTMIAAYLLGE 431

Query: 113 YTNQHGLKDNLKELLGINISKAQQSS----DWSADDLSDEQL--QYAASDVVHLHALRLQ 166
             N   LK      LG+ +++         +    DL+D Q    YA +DV   + L   
Sbjct: 432 --NALDLKSLAFNRLGMEMTEITTLIGRGRNQLTMDLTDVQAAGDYACADVEATYRLVEV 489

Query: 167 FTEKLQRLGRSDLATS 182
               L+   +  L   
Sbjct: 490 LQPDLEAQQQERLFRE 505


>gi|72388593|gb|AAZ67939.1| At5g24340 [Arabidopsis thaliana]
 gi|72388595|gb|AAZ67940.1| At5g24340 [Arabidopsis thaliana]
 gi|72388597|gb|AAZ67941.1| At5g24340 [Arabidopsis thaliana]
 gi|72388599|gb|AAZ67942.1| At5g24340 [Arabidopsis thaliana]
 gi|72388601|gb|AAZ67943.1| At5g24340 [Arabidopsis thaliana]
 gi|72388603|gb|AAZ67944.1| At5g24340 [Arabidopsis thaliana]
 gi|72388609|gb|AAZ67947.1| At5g24340 [Arabidopsis thaliana]
 gi|72388611|gb|AAZ67948.1| At5g24340 [Arabidopsis thaliana]
          Length = 163

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            L    KE+L I++SK  Q SDWS   L++EQ  YAA+D   L  +   F   L  
Sbjct: 29  SLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVE 84


>gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
 gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
          Length = 937

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 31/208 (14%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58
           R +  +A+DTET  L   R  L  + L    G    I +                     
Sbjct: 347 RDLGHVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMP 406

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  L  +L DE   KI    ++D  +L    G+RV P+  T + S       + HG
Sbjct: 407 LGLALSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHG 465

Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           + +     LG         +   +    +    +    + YAA D      L   F  +L
Sbjct: 466 MDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQA-VCYAAEDADVTFRLWKLFKPQL 524

Query: 172 QRLGRSDLATSCCN--FLMDRAELDLLG 197
            R  R            +   AE+++ G
Sbjct: 525 HRA-RVTTVYETLERPLVPVLAEMEMAG 551


>gi|72388605|gb|AAZ67945.1| At5g24340 [Arabidopsis thaliana]
 gi|72388607|gb|AAZ67946.1| At5g24340 [Arabidopsis thaliana]
          Length = 163

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            L    KE+L I++SK  Q SDWS   L++EQ  YAA+D   L  +   F   L  
Sbjct: 29  SLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVE 84


>gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
 gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
          Length = 937

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 31/208 (14%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58
           R +  +A+DTET  L   R  L  + L    G    I +                     
Sbjct: 347 RDLGHVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMP 406

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  L  +L DE   KI    ++D  +L    G+RV P+  T + S       + HG
Sbjct: 407 LGLALSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHG 465

Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           + +     LG         +   +    +    +    + YAA D      L   F  +L
Sbjct: 466 MDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQA-VCYAAEDADVTFRLWKLFKPQL 524

Query: 172 QRLGRSDLATSCCN--FLMDRAELDLLG 197
            R  R            +   AE+++ G
Sbjct: 525 HRA-RVTTVYETLERPLVPVLAEMEMAG 551


>gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
 gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
          Length = 937

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 31/208 (14%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58
           R +  +A+DTET  L   R  L  + L    G    I +                     
Sbjct: 347 RDLGHVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMP 406

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  L  +L DE   KI    ++D  +L    G+RV P+  T + S       + HG
Sbjct: 407 LGLALSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHG 465

Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           + +     LG         +   +    +    +    + YAA D      L   F  +L
Sbjct: 466 MDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQA-VCYAAEDADVTFRLWKLFKPQL 524

Query: 172 QRLGRSDLATSCCN--FLMDRAELDLLG 197
            R  R            +   AE+++ G
Sbjct: 525 HRA-RVTTVYETLERPLVPVLAEMEMAG 551


>gi|291239803|ref|XP_002739809.1| PREDICTED: exonuclease 3-5 domain containing 2-like [Saccoglossus
           kowalevskii]
          Length = 682

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 21/150 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFH 80
            + +D E + +    + + ++QLS  D    +I+I   Q   P  L+ +L D+   K+  
Sbjct: 167 VLGLDCEWVSVDGHPNPVSLLQLSTLDY-CYLIQIHRIQPMLPECLIDILQDKSILKVGV 225

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH----------GLKDNLKELLGIN 130
               D   L + + + VR            RT+T +H           L D   E+LG  
Sbjct: 226 GIMEDAKKLLHDYKMLVRGCVD-------LRTFTFRHRPQLKRCITGSLADLSYEILGKE 278

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVV 158
           + K+   +  +W A D SD Q+ YAA D V
Sbjct: 279 MDKSLDVRCGNWEAVDFSDVQISYAAEDAV 308


>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
 gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
          Length = 920

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 25/198 (12%)

Query: 18  RYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA----PNLVGML 70
           R    +++DTET         L   C    +  +     + I   ++ A         + 
Sbjct: 345 RTKRILSLDTETTSTNAIDAELVGLC---FAVEEHKAFYVAIPNDREEALQYVNIFKPVY 401

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-- 128
            D    KI    ++D  VL          +F T +A  + +   + H +    + LL   
Sbjct: 402 EDPSILKIGQNLKYDYEVLKNYGVTLGGKMFDTMLAHYVIQPELH-HNMDYMAETLLHYK 460

Query: 129 -INISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
            I+I +        Q S     DL  + + +YAA D      L+     KL+  G  +L 
Sbjct: 461 TIHIDELIGPRGKHQKS---MRDLDPKDVYEYAAEDADITLQLKNVLEPKLKETGTENLF 517

Query: 181 TS-CCNFLMDRAELDLLG 197
            +     +   A+++L G
Sbjct: 518 WNIEMPLVPVLADMELNG 535


>gi|145550275|ref|XP_001460816.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428647|emb|CAK93419.1| unnamed protein product [Paramecium tetraurelia]
          Length = 720

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 16/158 (10%)

Query: 24  AVDTETLGLMPRRDR-----LCIVQLSPGDG--TVDIIRIAAGQKNAPNLVGMLVDEKRE 76
             DTE        D      + I+Q+S  +    +DI  +    +    L       K  
Sbjct: 354 GFDTEF---CHYFDEFAIGGVAIMQISTENNVYIIDIFNLREKLELLQFLNNYFASNKI- 409

Query: 77  KIFHYGRFDIAVLFYTFG----VRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131
           KI H    D  V+         V  + +   T + + +     N   L + + +L G  +
Sbjct: 410 KIGHSVWNDFTVMAQNMNLDQTVEPKNIVDLTFLYNEVFPENKNNVSLANQVYQLFGKKL 469

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           SK +  S+W    L   QL Y A D     AL L+  +
Sbjct: 470 SKKECFSNWQRRPLRKCQLHYGAMDAYICIALYLKLNQ 507


>gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
 gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
          Length = 937

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 31/208 (14%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58
           R +  +A+DTET  L   R  L  + L    G    I +                     
Sbjct: 347 RDLGHVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMP 406

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  L  +L DE   KI    ++D  +L    G+RV P+  T + S       + HG
Sbjct: 407 LGLALSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHG 465

Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           + +     LG         +   +    +    +    + YAA D      L   F  +L
Sbjct: 466 MDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQA-VCYAAEDADVTFRLWKLFKPQL 524

Query: 172 QRLGRSDLATSCCN--FLMDRAELDLLG 197
            R  R            +   AE+++ G
Sbjct: 525 HRA-RVTTVYETLERPLVPVLAEMEMAG 551


>gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
 gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
          Length = 896

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 22/199 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68
                   +DTET  L   +  L  + L+  +     I +A           +    L  
Sbjct: 317 LEQSQQFCIDTETTNLDVMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTALKP 376

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L +    KI    ++D +VL    G+ ++ + + T + S +  +   +H +     + L
Sbjct: 377 ILENPAIGKIGQNIKYDYSVLKNY-GITLQGIRYDTMLESYVLNSGAGRHDMDSLALKYL 435

Query: 128 GINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178
           G    K     D     A  L  +Q+       YAA D      L  +    L +  R+ 
Sbjct: 436 GY---KTISYEDVAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKLYPMLDKPLRNV 492

Query: 179 LATSCCNFLMDRAELDLLG 197
           L       L   A++++ G
Sbjct: 493 LHDIEMPLLTVLADMEMHG 511


>gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068]
 gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068]
          Length = 966

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 71/201 (35%), Gaps = 25/201 (12%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----------APNLV 67
           +   ++ +DTET  + PR   +        DG    + I A +            A    
Sbjct: 378 KAAGSLVIDTETTSVQPRWAEIVGYSFCYRDGEAWYLPIRAPENEQALCLDATAVADLFR 437

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L D    K+    ++D+ VL  + G+ +R   F T +A  L       H L +  +  
Sbjct: 438 PVLEDPAIAKVGQNIKYDMVVL-RSAGIELRGAAFDTMVADYLIDPGERSHNLDELARRH 496

Query: 127 LG---INIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           LG   I I       K Q   D     L      YAA D +  + L      +L++ G  
Sbjct: 497 LGHQNIEIESLIGTGKKQIRMD--QVPL-AAITDYAAEDALVPYRLLPILEPRLEQDGLV 553

Query: 178 DLATS-CCNFLMDRAELDLLG 197
            L        +   AEL+  G
Sbjct: 554 PLFRDLEMPLVEVLAELEHRG 574


>gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris]
 gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris]
          Length = 896

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 22/199 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68
                   +DTET  L   +  L  + L+  +     I +A           +    L  
Sbjct: 317 LEQSQQFCIDTETTNLDVMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTALKP 376

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L +    KI    ++D +VL    G+ ++ + + T + S +  +   +H +     + L
Sbjct: 377 ILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYL 435

Query: 128 GINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178
           G    K     D     A  L  +Q+       YAA D      L  +    L +  R+ 
Sbjct: 436 GY---KTISYEDVAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKLYPMLDKPLRNV 492

Query: 179 LATSCCNFLMDRAELDLLG 197
           L       L   A++++ G
Sbjct: 493 LHDIEMPLLTVLADMEMHG 511


>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
 gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
          Length = 927

 Score = 71.2 bits (174), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 61/188 (32%), Gaps = 16/188 (8%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T+   E         R   + A+DTET  L P R RL  +  +   G    + +      
Sbjct: 331 TVTTVEQLQAWIATLRAAGSFALDTETDSLDPMRARLVGLSFAAEPGRAAYLPLGHDYPG 390

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           AP           L  +L D    KI  +G++D+ VL             T + S +  +
Sbjct: 391 APAQLGYEQALDLLRPLLADPAVRKIGQHGKYDLHVLRRHGVAVAGYADDTLLESFVLDS 450

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQ 166
              +H +       LG    K +         +   Q       +YAA D      L   
Sbjct: 451 GNARHDMDSLALRHLGYTTVKYEDICGKGVRQIPFSQCALDDATRYAAEDADITLRLHRV 510

Query: 167 FTEKLQRL 174
            + +LQ  
Sbjct: 511 LSARLQAE 518


>gi|325068900|ref|ZP_08127573.1| 3'-5' exonuclease [Actinomyces oris K20]
          Length = 152

 Score = 71.2 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGML 70
            A+  A     +AVD E            ++QL   G GT+ I  + AG      L   L
Sbjct: 59  AAQLLAAGRGPVAVDAERASGFRYGQDAYLIQLRRDGVGTLLIDPVTAGP--LTELATAL 116

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
                E I H    DI  L    G++   +F T++ +RL
Sbjct: 117 DGP--EWILHAADQDIPCLTAR-GLKAASLFDTELXARL 152


>gi|145521320|ref|XP_001446515.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413993|emb|CAK79118.1| unnamed protein product [Paramecium tetraurelia]
          Length = 513

 Score = 71.2 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 15/178 (8%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL-------CIVQLSPGDGTVDII--R 55
           ++ +  + A       +A+  D E +       +L       C+VQ++  +        +
Sbjct: 324 KIDQNYLDAWKCINQSNAVGYDCEHI---TPWTKLDYQGFKVCLVQIATSNHVFLFDYQK 380

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVFCTKIASRLTRT 112
           +   Q+   ++  +L + +  KI    + D+           + +R +       ++   
Sbjct: 381 LKEFQEFKNDVSQLLENVEILKIGLSLKDDLKHTVNYLKLNNIIIRSIIELSTCFKVLEG 440

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
                 L    +      +SK    S+W    L   Q+ YAA D +    +     EK
Sbjct: 441 DPKLRSLAYISEFYFKKKLSKYDTCSNWEYRPLRKAQIHYAALDAIASLQVFQTMKEK 498


>gi|72388621|gb|AAZ67953.1| At5g24340-like protein [Arabidopsis lyrata]
          Length = 163

 Score = 71.2 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            L    KE+L I++SK  Q SDWS   L++EQ  YAA+D   L  +   F   L  
Sbjct: 29  SLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFKAHLVE 84


>gi|255086371|ref|XP_002509152.1| predicted protein [Micromonas sp. RCC299]
 gi|226524430|gb|ACO70410.1| predicted protein [Micromonas sp. RCC299]
          Length = 1227

 Score = 71.2 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           + + R + +Q GL    + LLG  + K ++  DWS   L++ Q+ Y A D   L  +   
Sbjct: 616 AAIDRGHGSQPGLSSVCQALLGQPLDKRERCGDWSRRPLTESQVAYGAQDARVLLRIMPG 675

Query: 167 F 167
            
Sbjct: 676 L 676


>gi|73979345|ref|XP_539984.2| PREDICTED: similar to Werner syndrome protein [Canis familiaris]
          Length = 1680

 Score = 71.2 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 8/193 (4%)

Query: 21  DAIAVDTETLGLMPRR--DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
             +  D E   +  +R   R+ ++QL   +    +  I++       L  +L +E  +K 
Sbjct: 302 GVVGFDMEWPPVYTKRKPSRVALIQLCVSENKCYLFHISSMSVFPQGLKMLLENEAIKKA 361

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQ 135
               + D   L   F + ++     T +A+   +  T    L   +K L G  +   ++ 
Sbjct: 362 GVGIKGDQRKLLCDFDIDLKNFVELTDVANEKLKC-TETWSLNGLVKHLFGKQLLKDRSI 420

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           + S+W    L+++Q  YAA+D      +  +       + R  +       L    +  L
Sbjct: 421 RCSNWGDFPLTEDQKLYAATDAYAGLIIYQKLEILGNAVERFAINKKEEEILPIDVKKQL 480

Query: 196 LGWEN--VDIFSH 206
                  +D+  H
Sbjct: 481 TSISEEMMDLAKH 493


>gi|167751882|ref|ZP_02424009.1| hypothetical protein ALIPUT_00124 [Alistipes putredinis DSM 17216]
 gi|167660123|gb|EDS04253.1| hypothetical protein ALIPUT_00124 [Alistipes putredinis DSM 17216]
          Length = 203

 Score = 71.2 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 10/155 (6%)

Query: 17  ARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
                 I  DTET      R     R+ ++QLS  + +  + R+     +   +V +L +
Sbjct: 44  LAAQPVIGFDTET--RPSFRAGVVNRVALLQLSSPEQSF-LFRLCKIPLDK-AIVKILEN 99

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           ++  KI    + D+  L      +       +  +        +  L+     +LG  +S
Sbjct: 100 KEILKIGADVKGDLRALHNIRHFQEAGFVDLQELAG--EWGIEEKSLRKLSAIVLGQRVS 157

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           KAQ+ S+W A  L+D+Q  YAA+D      +  + 
Sbjct: 158 KAQRLSNWEAAQLTDKQQFYAATDAWVCTRIYDRL 192


>gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3]
 gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
          Length = 916

 Score = 71.2 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 71/177 (40%), Gaps = 18/177 (10%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------- 65
                 D IA+DTET  L      L  +  +   G    + ++    +AP          
Sbjct: 331 ATLSKADLIAIDTETTSLNYMEAELVGISFAVEAGKAAYLPLSHDYVDAPEQLDKALVFE 390

Query: 66  -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123
            L  +L +E  +K+    ++DI++     G++++ V F T + S +  +  ++H + D  
Sbjct: 391 KLTPLLENEAIKKVGQNLKYDISIFANA-GIKLKGVQFDTMLESYVFNSVASKHNMDDLA 449

Query: 124 KELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            + LG      ++ +   A  L+  Q+       YAA D      L      +L++L
Sbjct: 450 LKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKL 506


>gi|154303273|ref|XP_001552044.1| hypothetical protein BC1G_09385 [Botryotinia fuckeliana B05.10]
 gi|150854948|gb|EDN30140.1| hypothetical protein BC1G_09385 [Botryotinia fuckeliana B05.10]
          Length = 553

 Score = 71.2 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 19/160 (11%)

Query: 34  PRRDR--LCIVQLSPGD--GTVDII---RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI 86
               +  + ++QL+  +  G   I    ++ A +  AP L  ++ D +  K+      D 
Sbjct: 272 HHGPKKNVSLIQLATEERIGLFHIALFPQVNASELVAPTLKKIMEDPEVTKVGVAISADC 331

Query: 87  AVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKA--Q 135
             L     +    +F      RL +   +Q           L   ++E L + + K    
Sbjct: 332 TRLRTHLNIDSVSIFELSHLHRLVKYTLSQEYDLINKRLVSLAKQVEEHLHLPLFKGGDV 391

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           ++SDWS   LS +Q+ YAASD    + L      K Q L 
Sbjct: 392 RASDWS-RGLSIQQISYAASDSYAGYHLYDVLETKRQALN 430


>gi|281207669|gb|EFA81849.1| hypothetical protein PPL_05081 [Polysphondylium pallidum PN500]
          Length = 341

 Score = 70.8 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 18/170 (10%)

Query: 8   EGDIPAEC-AARYVDAIAVDTETLGLMPR----RDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            G +P++   +     IAVD E  GL       +  + ++Q++ G   V  I I      
Sbjct: 161 NGKLPSDIKESSKSPVIAVDCEWPGLRKFLVGEKATVSLIQMTNG--VVCRIGIPK---- 214

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             +L  +L ++   K+ H    D   +    GV +  ++ T     + R  + +      
Sbjct: 215 --HLKELLTNDNILKVGHGISKDANKISDDLGVLMENIYDTNYHPIVLRMNSKKLAFA-- 270

Query: 123 LKELLGINI--SKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTE 169
           + +  G+NI  SK+   S+W+   DL++ Q++ A+++V     L  +F +
Sbjct: 271 VGKFFGVNILRSKSLSVSNWATSGDLTENQIEIASNEVYFARKLYFEFKD 320


>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
          Length = 935

 Score = 70.8 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVG 68
               IAVDTET  L      L  +  +  +G    + +     +AP           +  
Sbjct: 357 AAKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKP 416

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  L
Sbjct: 417 ILENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYL 474

Query: 128 GINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           G      +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 475 GHETIAFESIAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 527


>gi|328872413|gb|EGG20780.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 639

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 14/163 (8%)

Query: 28  ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA 87
           E+ G+    D++ ++Q++  D  V +I+    +    +L  ++ D +  K+      D  
Sbjct: 174 ESNGIKT-NDKVALIQIAFKDE-VFLIQCLRLKAIPKSLQLLMADHRILKVGVSIAQDAT 231

Query: 88  VLFYTFGVRVRPVFCTKIASRLTR----TYTNQHGLKDNLKELLGINISKAQ--QSSDWS 141
            +    G+ V+          L      T  +  GL    K  +G+ I K+   +   W 
Sbjct: 232 TIIKHLGIEVKGCVD------LVPLGNMTGFDGCGLAALAKSTMGVTIDKSHHIRCGHWE 285

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
           ++ L+ +Q+ YAA D      +     +K     ++++  +  
Sbjct: 286 SEQLTPDQIHYAACDAWIGREIFNVMYDKHVDTHKTEITPTEF 328


>gi|242087595|ref|XP_002439630.1| hypothetical protein SORBIDRAFT_09g017250 [Sorghum bicolor]
 gi|241944915|gb|EES18060.1| hypothetical protein SORBIDRAFT_09g017250 [Sorghum bicolor]
          Length = 562

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 19/172 (11%)

Query: 8   EGDIPAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
            G + A         I +D E          +  ++ I+Q++  D    I  +    ++ 
Sbjct: 362 NGLLSATSNIEACKIIGMDCEWRPNFEK-NTKPSKVSIIQIAS-DKVAFIFDLIKLYEDD 419

Query: 64  PN-----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY----T 114
           P      L  ++   K  K+     +DI    +        + C +    L         
Sbjct: 420 PKTLDSCLRRIMCSSKILKL----GYDIQCDLHQLTQSYGELDCFQSYEMLLDMQKLFKG 475

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
              GL    KE+LG  ++K++++S+W    L+  Q +YAA D V L  +  +
Sbjct: 476 VTGGLSGLSKEILGAGLNKSRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHE 527


>gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
 gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
          Length = 949

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 27/200 (13%)

Query: 3   TIRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           + +  +GD+  +   + +    ++  DTET G+      L  +  S   G    +     
Sbjct: 354 SYQTVQGDLGIKLLLQNLQKQTSVCFDTETTGIDALHAELVGMSFSYEKGKAFYVPFPES 413

Query: 60  QKNAPNLVG----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           Q+ A  L+        +E  EKI    ++D+ +L          +F T IA  L      
Sbjct: 414 QEEAKVLIDKFVPFFENENIEKIGQNLKYDLKILSNYGVTVKGKLFDTMIAHYLINP-DM 472

Query: 116 QHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHA 162
           +H +    +  L  +       I K         + LS      ++  +YAA D      
Sbjct: 473 RHNMDILAETYLKYSPKSIETLIGKK------GKNQLSMRDVPLEDIKEYAAEDADVTLQ 526

Query: 163 LRLQFTEKLQRLGRSDLATS 182
           L+  FT +L++     L   
Sbjct: 527 LKEIFTAELEKTETKKLFDE 546


>gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2]
 gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
          Length = 891

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 23/200 (11%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA---PNL-------V 67
           +  D ++VDTET    P   +L  +  +        I +     +A   P+L        
Sbjct: 310 KQADILSVDTETTSKHPMLAKLVGISFAVEPHRAYYIPVGHTGMDAKKQPDLSRVIALIR 369

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L + + +K+    ++D  VL    G+R++ + F T IAS L       H L     +L
Sbjct: 370 PLLENPEVKKVGQNIKYDYIVLTRH-GIRMQGLGFDTMIASHLLNPSQRGHSLDKIAMDL 428

Query: 127 LGINIS--KAQQSSDWSADDLS----DEQ--LQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L       K    S      +     + Q  L YAA D            +KLQ     D
Sbjct: 429 LDHKTIRYKEVTGS--GKTQIGFNEVEIQTALDYAAEDADITLLCHGILKQKLQESNLLD 486

Query: 179 LATS-CCNFLMDRAELDLLG 197
           L        +   A++++ G
Sbjct: 487 LMNQVEMPLITVLADMEMHG 506


>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
 gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
          Length = 924

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 24/203 (11%)

Query: 13  AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNL 66
            E  AR   ++ +A+DTET           +V ++     G G      +  G      L
Sbjct: 343 DELVARLDGLERLAIDTETTSTEAMWA--SLVGIAFSWEKGQGYYVPTPLPDGTPTETVL 400

Query: 67  VGM--LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
             +  ++   + K+    ++D+ VL         P F T +A  L       H L    +
Sbjct: 401 ERLAPILRRAQRKVGQNLKYDLVVLAQHGVEVPPPYFDTMVAHYLIAPE-EPHNLDVLAR 459

Query: 125 ELLGINI--------SKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLG 175
           + L   +        S   Q S     D+S +++  YA  D      L      +L R G
Sbjct: 460 QYLRYQMVAITELIGSGRDQKS---MRDVSIDEVGPYACEDTDIALQLADVLAAELDRHG 516

Query: 176 RSDLATS-CCNFLMDRAELDLLG 197
              +A       +   A+++  G
Sbjct: 517 LRHIAEEMEFPLIEVLADMERTG 539


>gi|194681199|ref|XP_001788105.1| PREDICTED: CG9247-like [Bos taurus]
          Length = 788

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           GL   ++++LG  + K QQ S+W    L + QL YAA+D   L  +      +  R
Sbjct: 622 GLSLLVQQVLGKPLDKTQQLSNWDRRPLGEGQLVYAAADAYCLLEVYWALCREPAR 677


>gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429]
 gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429]
          Length = 890

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 20/195 (10%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-------APNLVGMLVD 72
           V   ++DTET  L P   +L  V +S  +G    I I+   +N          L  +L  
Sbjct: 317 VKTFSIDTETTSLDPFSAKLVGVSISTNEGEAYYIPISHVSENNLTKEIVLKFLKEILEC 376

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           E+   +    +FD  V     G+  + P F T +A+ L      ++ L++   + LG  +
Sbjct: 377 ERYNIVGQNLKFDYKVFMVN-GIEPQIPHFDTMVAAYLINPEERRYNLEELALKYLGYKM 435

Query: 132 SKAQQSSDWSADDLS---------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
              ++  D +   L          ++  +Y+  DV     L    ++ +  +        
Sbjct: 436 ISFEELVD-NNMPLFGNDFSFISIEKAAEYSCEDVDITFRLYSYLSKYIGEMKEL-FYNI 493

Query: 183 CCNFLMDRAELDLLG 197
               +   A+++L G
Sbjct: 494 EMPLINVLAQMELNG 508


>gi|328770378|gb|EGF80420.1| hypothetical protein BATDEDRAFT_88588 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 715

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 18/160 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAP--NLVGMLVDEKRE 76
           I +D E        DR+ I Q++         V I+ +           L  +   ++  
Sbjct: 553 IGIDAE--WYNQGSDRMSIFQIAVLLNDTSRRVYILDLFNLDLTETCNVLTALFSSKRIT 610

Query: 77  KIFHYGRFDIAVLFYTFG--VRVRPVFC-TKIASRLTRTYTNQH-------GLKDNLKEL 126
            +   G  D+  L            +    K++  L      +H       GL D +  +
Sbjct: 611 TLGFDGVQDLKKLNALMPNLPLPYNLVDLNKLSMELFADKLKRHDIKKQQLGLSDLVLVV 670

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           L   + K  + +DW+   L   QL YAASD   L  +  +
Sbjct: 671 LDKTLDKRVRLTDWNRRPLRQCQLTYAASDSDVLIDIYKK 710


>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
 gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
          Length = 885

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 22/193 (11%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---------AGQKNA-PNLVGML 70
             +A DTET  L     ++     +  +     + +A          G + A   L  + 
Sbjct: 321 SWVAFDTETNALDAYNAKIVGFSFALNEHEAYYVPLAHHYLGVGEQIGMEEAKEALKKLF 380

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGI 129
             +    +    ++D+AV+   FG+R+   +  T + + L    +N  GL    K     
Sbjct: 381 KHK---IVGQNLKYDLAVIENNFGLRLSSSYADTMLMAWLLNPESN-VGLDTLAKRFFNH 436

Query: 130 NISK----AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
           ++ K      ++ ++S   L     +YA+ D      L  +  + L+     ++A     
Sbjct: 437 DMVKFKDVVSKNENFSHVPLDKA-CEYASEDAWMTLKLYNKLHDMLEPR-LLEIAKEVEF 494

Query: 185 NFLMDRAELDLLG 197
            F++    ++  G
Sbjct: 495 PFILTLMRMEKEG 507


>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
          Length = 924

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 24/203 (11%)

Query: 13  AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNL 66
            E  AR   ++ +A+DTET           +V ++     G G      +  G      L
Sbjct: 343 DELVARLDGLERLAIDTETTSTEAMWA--SLVGIAFSWEKGQGYYVPTPLPDGTPTETVL 400

Query: 67  VGM--LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
             +  ++   + K+    ++D+ VL         P F T +A  L       H L    +
Sbjct: 401 ERLAPILRRAQRKVGQNLKYDLVVLAQHGVEVPPPYFDTMVAHYLIAPE-EPHNLDVLAR 459

Query: 125 ELLGINI--------SKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLG 175
           + L   +        S   Q S     D+S +++  YA  D      L      +L R G
Sbjct: 460 QYLRYQMVAITELIGSGRDQKS---MRDVSIDEVGPYACEDTDIALQLADVLAAELDRHG 516

Query: 176 RSDLATS-CCNFLMDRAELDLLG 197
              +A       +   A+++  G
Sbjct: 517 LRHIAEEMEFPLIEVLADMERTG 539


>gi|301166256|emb|CBW25831.1| putative 3'-5' exonuclease [Bacteriovorax marinus SJ]
          Length = 193

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 15/174 (8%)

Query: 3   TIRVHEGDIPAECAARYVDA---IAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDII 54
            I +   D  A   A+ + +   +  DTET      G     D + ++QLS  +    + 
Sbjct: 23  NIHLITDDAEAIKIAKKLSSEEILGFDTETRPSFKKGEN--YD-VALLQLST-ENDAYLF 78

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
           R+    K    LV +L DE   K     R DI  L      +       +  ++      
Sbjct: 79  RLNK-MKLPNELVDLLADENIVKAGVAVRDDIKSLQKLNPFKEESFCELQDVAK--ELGV 135

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
              GL+      L   +SK  + ++W    L+  Q+ YAA D      +  +  
Sbjct: 136 KNFGLRALCAIFLNYRLSKRAKITNWEQPKLTQAQIHYAACDAWVGLQIYKKMQ 189


>gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245]
 gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245]
          Length = 943

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 22/177 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVD 72
               D+ A+DTET  L   +  L  +  S        I    G  +       L  +L +
Sbjct: 365 LEQADSFAIDTETTSLDTFQAELAGISFSLKPKEARFIYFGKGGLDIGNTLERLKPVLEN 424

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGI-- 129
               K     ++D+ VL    G+ + PV F T +AS +      +H L D     L I  
Sbjct: 425 PDIRKTGQNLKYDLLVLKNY-GISLTPVAFDTMLASYVLDPE-EKHNLDDLAARHLSIRT 482

Query: 130 ----NISKAQQSSDWSADD----LSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRS 177
                ++  +             +   QL  Y   D      L+  F  KL    R 
Sbjct: 483 TTFDELTAGEGK----KRTHILDVPSAQLSDYGCQDADIALRLQEVFEAKLLEDQRL 535


>gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740]
 gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes]
          Length = 898

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 25/210 (11%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE-K 74
           +      +A DTET  L  R  +L     S        + +A     A + V +      
Sbjct: 324 SLTPSSVVAFDTETDSLETRSAKLVGFSFSLEGEVGYYVPVAHSYLGAGDQVSLEEARGA 383

Query: 75  REKIF------HYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            EKIF      H  +FD+ +L    G   +  +  + I + L  +     GL   +K   
Sbjct: 384 IEKIFSAQVVGHNLKFDLEILHGALGFYPKGRIGDSMILAWLLDSGAP-VGLDFQMKRWF 442

Query: 128 GINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG---RS 177
           G  +        K +  +      L +   +YA  D +  + L  +  E+L++ G     
Sbjct: 443 GHEMIPFEKMVKKGETFA---QVALEEA-AEYAGEDALATYRLYFRLEEELKKRGCESLL 498

Query: 178 DLATS-CCNFLMDRAELDLLGWE-NVDIFS 205
            LA S    F+    E++  G   + + F+
Sbjct: 499 GLAESLEFPFIHTLIEMEERGIRVDTEFFA 528


>gi|282860304|ref|ZP_06269373.1| 3'-5' exonuclease [Prevotella bivia JCVIHMP010]
 gi|282586901|gb|EFB92137.1| 3'-5' exonuclease [Prevotella bivia JCVIHMP010]
          Length = 225

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 19/190 (10%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           ++  EG   A       D + +DTET      G+     ++ ++Q+S  +          
Sbjct: 29  VKTAEGASAAVDYLLQSDILGIDTETRPSFKKGIRH---KVALLQVSTREVCFLFRLNII 85

Query: 59  GQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           G  ++  ++ +L D    KI    H    D  +L      +       +    +     +
Sbjct: 86  GITDS--IIRLLEDTSVPKIGLSLHD---DFRMLNKRVTFKPGYFIDLQ--DYVKDLGIH 138

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
              L+     + G  I K +Q ++W   +L+D+Q +YA++D      L L+  ++L+  G
Sbjct: 139 DLSLQKLYANVFGEKIVKREQLTNWENTELTDKQKRYASTDAWTCINLYLKM-KELKETG 197

Query: 176 RSDLATSCCN 185
              L  +   
Sbjct: 198 DYKLVENDLE 207


>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
 gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
          Length = 930

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 353 AKLIAVDTETDSLDYISANLVGISFALENGEATYLPLQLDYLDAPKTLEKSTALAAIKPI 412

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522


>gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
 gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
          Length = 929

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 74/226 (32%), Gaps = 49/226 (21%)

Query: 13  AECAARYV--DAIAVDTETLGLMPRRDRLCIV----QLSPGDGT----VDIIRIAAGQKN 62
            +  AR      +AVDTET  L        +V     L+PG+        +   A G  +
Sbjct: 328 EDWVARATAQGHVAVDTETDSLDSVSG--GLVGVSLALAPGEACYIPLAHVDPEAKGDGD 385

Query: 63  ---------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                             L  ML D    KI    ++D++V      + V P+  T + S
Sbjct: 386 MFGADPPRQIKMAEALKVLKPMLEDPAVLKIGQNIKYDLSVFAQH-KIHVHPIDDTMLIS 444

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSD---WSADDLSDEQL------QYAASDVV 158
                  + HG+ D  +  LG    K     D         S  Q+      +YAA D  
Sbjct: 445 FALNAGIHGHGMDDLSERYLGH---KPITFKDVAGTGKAQKSFAQVALDKATEYAAEDAD 501

Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFL-----MDRAELDLLGWE 199
               L      +L    R++  T+    L        AE++  G +
Sbjct: 502 VTLRLWQALKPRL----RTEQVTAVYETLDRPLGPVLAEMEQAGVK 543


>gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
 gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
          Length = 932

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 36/209 (17%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------AGQKN 62
             +AVDTET GL   R  L  V L    G    + +A                   GQ +
Sbjct: 343 GVVAVDTETTGLNEMRADLVGVSLCVDPGRAAYLPLAHKDGGGADDLFGGEAKLAEGQLD 402

Query: 63  APN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  L  +L D    KI    ++D  +L    G+ V P+  T + S       + HG
Sbjct: 403 FETALGMLKPVLEDPAVLKIGQNMKYDAKILARN-GITVAPIDDTMLLSYALHAGLHGHG 461

Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK- 170
           +    +  L          +   + +  +    + +   +YAA D      L  +   + 
Sbjct: 462 MDALSERYLDHTPIPIKTLLGTGKSAITFDFVPIEEA-TKYAAEDAEITLRLWQRLKPRL 520

Query: 171 -LQRLGR-SDLATSCCNFLMDRAELDLLG 197
            L ++ R  +        +   AE+++ G
Sbjct: 521 HLAQVTRVYEWMERPM--VPVLAEMEMRG 547


>gi|119583828|gb|EAW63424.1| Werner syndrome, isoform CRA_a [Homo sapiens]
          Length = 1405

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  +++       L  +L ++  +K        I      L   F
Sbjct: 96  KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A++  +  T    L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210

Query: 151 QYAASD 156
            YAA+D
Sbjct: 211 LYAATD 216


>gi|119583829|gb|EAW63425.1| Werner syndrome, isoform CRA_b [Homo sapiens]
          Length = 1436

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  +++       L  +L ++  +K        I      L   F
Sbjct: 96  KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A++  +  T    L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210

Query: 151 QYAASD 156
            YAA+D
Sbjct: 211 LYAATD 216


>gi|119583830|gb|EAW63426.1| Werner syndrome, isoform CRA_c [Homo sapiens]
          Length = 1406

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  +++       L  +L ++  +K        I      L   F
Sbjct: 96  KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A++  +  T    L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210

Query: 151 QYAASD 156
            YAA+D
Sbjct: 211 LYAATD 216


>gi|1280208|gb|AAC41981.1| unnamed protein product [Homo sapiens]
 gi|3719421|gb|AAC63361.1| WRN [Homo sapiens]
 gi|6272686|gb|AAF06162.1| WRN [Homo sapiens]
 gi|60461921|gb|AAX21098.1| Werner syndrome helicase [Homo sapiens]
          Length = 1432

 Score = 70.8 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  +++       L  +L ++  +K        I      L   F
Sbjct: 96  KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A++  +  T    L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210

Query: 151 QYAASD 156
            YAA+D
Sbjct: 211 LYAATD 216


>gi|110735439|ref|NP_000544.2| Werner syndrome ATP-dependent helicase [Homo sapiens]
 gi|322510082|sp|Q14191|WRN_HUMAN RecName: Full=Werner syndrome ATP-dependent helicase; AltName:
           Full=DNA helicase, RecQ-like type 3; Short=RecQ3;
           AltName: Full=Exonuclease WRN; AltName: Full=RecQ
           protein-like 2
 gi|37953299|gb|AAR05448.1| Werner syndrome [Homo sapiens]
          Length = 1432

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  +++       L  +L ++  +K        I      L   F
Sbjct: 96  KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A++  +  T    L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210

Query: 151 QYAASD 156
            YAA+D
Sbjct: 211 LYAATD 216


>gi|189238221|ref|XP_970385.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
          Length = 336

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 47/170 (27%), Gaps = 40/170 (23%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    + VD E       +   C+VQ+S  D    I  IA            L DE  
Sbjct: 144 DLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIA------------LKDE-- 188

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
               H                   VF TK           + GL   L++   +   K  
Sbjct: 189 ---LHALNE---------------VF-TKK-----SLGYKKLGLDALLQDY-HVAKDKTM 223

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           Q  D+    L  +   YA  D  +L     +   +L            CN
Sbjct: 224 QRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCN 273


>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
          Length = 930

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 353 AKLIAVDTETDSLDYISANLVGISFALENGEATYLPLQLDYLDAPKTLEKSTALAAIKPI 412

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522


>gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031]
 gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031]
          Length = 935

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I + + D+            IAVDTET  L      L  +  +  +G    + +     +
Sbjct: 341 ILLTQADLTCWIEKLNAAKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLD 400

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           AP           +  +L +    KI    +FD   +F   G+ ++ V F T + S    
Sbjct: 401 APKTLEKSTALAAIKPILENPDIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLN 459

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           + T +H + D  K  LG      +  +      L+  Q+      +YAA D      L+ 
Sbjct: 460 S-TGRHNMDDLAKRYLGHETIAFESIAGKGKGQLTFNQIPLEQATEYAAEDADVTMKLQQ 518

Query: 166 QFTEKLQRL 174
               KLQ  
Sbjct: 519 ALWLKLQEE 527


>gi|189467792|ref|ZP_03016577.1| hypothetical protein BACINT_04184 [Bacteroides intestinalis DSM
           17393]
 gi|189436056|gb|EDV05041.1| hypothetical protein BACINT_04184 [Bacteroides intestinalis DSM
           17393]
          Length = 210

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + +D+E             ++ ++Q+S       + R+       P ++ 
Sbjct: 36  AVTYLKQYPLLGIDSETRPSFTKGQSH--KVALLQVSSEKDCF-LFRLNLTGLTLP-IIS 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L      K+    R D  +L              + A    + Y    G     L+   
Sbjct: 92  LLESPSVTKVGLSLRDDFMMLHKRAPFE-------QRACIELQEYVRMFGIQDKSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             L G  ISK+Q+ S+W A+ L++ Q QYAA+D      +  +  E L+  G  +LA   
Sbjct: 145 GILFGEKISKSQRLSNWEAEHLTEPQKQYAATDAWACLNIYNRLQE-LKISGDYELAPDE 203

Query: 184 CNFLMD 189
              ++ 
Sbjct: 204 TEEIIT 209


>gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 635

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 353 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522


>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
 gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
          Length = 930

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 353 AKLIAVDTETDSLDYISANLVGISFALENGEATYLPLQLDYLDAPKTLEKSTALAAIKPI 412

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522


>gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 896

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 22/199 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68
                   +DTET  L   +  L  + L+  +     I +A           +    L  
Sbjct: 317 LEQSQQFCIDTETTNLDVMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTALKP 376

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L +    KI    ++D +VL    G+ ++ + + T + S +  +   +H +     + L
Sbjct: 377 ILENPAIGKIGQNIKYDYSVLKNY-GITLKGIGYDTMLESYVLNSGAGRHDMDSLALKYL 435

Query: 128 GINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178
           G    K     D     A  L  +Q+       YAA D      L  +    L    R+ 
Sbjct: 436 GY---KTISYEDVAGKGAKQLRFDQIPVVKAGIYAAEDADITLRLHHKLYPMLDESLRNV 492

Query: 179 LATSCCNFLMDRAELDLLG 197
           L       L   A++++ G
Sbjct: 493 LHDIEIPLLTVLADMEMHG 511


>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
 gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
          Length = 930

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 353 AKLIAVDTETDSLDYISANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 413 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 471 HETIAFESIAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522


>gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136]
          Length = 971

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 71/200 (35%), Gaps = 21/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-APNLVGM---LVD 72
              VDA   DTET GL P   R+  +  S          I   +      L  +   L  
Sbjct: 391 LAGVDAFCFDTETDGLDPLSARMLGIAFSIAPHEGCYFHIPEERDEHLAVLKEVKTFLST 450

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---I 129
            K EKI H  +FD+ V          P F T +   L      +HG+    +  LG   +
Sbjct: 451 SKAEKIGHNLKFDLRVFLAHGIEVAGPFFDTMLVHALVEP-DQRHGMDYLSERYLGYSPV 509

Query: 130 NI------SKAQ--QSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +I       K    Q S   A+  L +   +YAA D      L  +   +L+RLG   + 
Sbjct: 510 SITTLIGEKKGATPQKS--MAEVPL-EPLAEYAAEDADVTLQLSQKLRPELERLGLMKVF 566

Query: 181 TS-CCNFLMDRAELDLLGWE 199
                  L   A ++  G +
Sbjct: 567 YEIEAPLLPVLAHMEHEGVK 586


>gi|299473101|emb|CBN77494.1| 3\'-5\' exonuclease family protein [Ectocarpus siliculosus]
          Length = 192

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 64/194 (32%), Gaps = 34/194 (17%)

Query: 25  VDTET-----LGLMPRRDRLCIVQLS----PGDGTVDIIRIAA-------GQKNAPNLVG 68
           +DTET     +G         ++Q++     G+  V +I + +        +  +  L G
Sbjct: 3   IDTETQPSFAVGE---WHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSG 59

Query: 69  MLVDEKREKI----------FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQ 116
                   K+            +   +   L    GV       TK+             
Sbjct: 60  PFGSPNVVKLGVGLANDLDEMSFAFEETPFLEQVPGVLNLNALNTKLTGGACNDQGIPRD 119

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            GL+      LG ++SK QQ S W+   L   Q+ YAA D +    +       L  LG 
Sbjct: 120 LGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVFDAL---LLALGS 176

Query: 177 SDLATSCCNFLMDR 190
            D+   C  +   R
Sbjct: 177 LDVGELCTTWTPRR 190


>gi|282895827|ref|ZP_06303910.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
 gi|281199215|gb|EFA74082.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
          Length = 130

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS------PGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           + +DTE         RL ++Q+        G+       +      A  +  ++V+   +
Sbjct: 23  LWLDTEIANWNTPYPRLSLIQVLAYPSDLTGEFAYIFDVLDKPDLTAYFIQHIMVNSNIQ 82

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLK 120
           K+FH   FD+  L      + + V CT K+A ++ R       LK
Sbjct: 83  KVFHNADFDLKYLGKN---QAQNVVCTFKLAKKINRKVLQTTNLK 124


>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
 gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
          Length = 930

 Score = 70.4 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 353 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 413 LENPDIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +    + L+  Q+      +YAA D      L+     KLQ+ 
Sbjct: 471 HETIAFESIAGKGKNQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQQE 522


>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
 gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
          Length = 935

 Score = 70.4 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 358 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKLI 417

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 418 LENPNIHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 475

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 476 HETIAFESLAGKGKSQLTFNQIPLQQATEYAAEDADVTMKLQQALWLKLQEE 527


>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 923

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 19/187 (10%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E ++ A        + IAVDTET  L   +  L  +  +   G    + +      AP
Sbjct: 328 LTESELDAWLDKLSKAELIAVDTETTSLDYMQAELVGLSFAIEAGKAAYLPLGHDYPGAP 387

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
           +          L  +L +   +K+    ++D++VL    G++++ V F T + S +  + 
Sbjct: 388 SQLPREATLAKLKPLLENPDIKKVGQNLKYDMSVLANA-GIQLKGVAFDTMLESYVFNSV 446

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQF 167
            ++H +     + LG      ++ +   A  L+  Q+       YAA D      L    
Sbjct: 447 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIALEQAAPYAAEDADITLRLHQHL 506

Query: 168 TEKLQRL 174
             +L + 
Sbjct: 507 WPRLSKE 513


>gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1]
 gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1]
          Length = 965

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 24/188 (12%)

Query: 7   HEGDIPA-ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--AAGQKNA 63
           ++ D+ A     ++    A DTET G  P RD L  + L+   G+   + +    G+   
Sbjct: 363 NDADLEAIVTELKHASLFAFDTETRGTNPLRDDLVGIALATIPGSGWYVPLGHTTGEAQL 422

Query: 64  P------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116
           P       L     D  R +I H  +FDI VL    G+ V  V F T +A+ L      +
Sbjct: 423 PRERVIAALRPFFADPARSRIAHNAKFDIEVLERA-GIPVAGVAFDTMLAAALLD---KR 478

Query: 117 HGLKDNLKELLGIN---------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
             LKD     L +          I K +    ++   ++     YAA+D      L+   
Sbjct: 479 RNLKDLAFYELNLAAPLESIEALIGKGKNQVTFADVPIARA-TPYAAADADMTLRLKPAL 537

Query: 168 TEKLQRLG 175
             KL+  G
Sbjct: 538 EAKLRAAG 545


>gi|313887168|ref|ZP_07820864.1| 3'-5' exonuclease [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300419|ref|YP_004442340.1| 3'-5' exonuclease [Porphyromonas asaccharolytica DSM 20707]
 gi|312923397|gb|EFR34210.1| 3'-5' exonuclease [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177482|gb|AEE13172.1| 3'-5' exonuclease [Porphyromonas asaccharolytica DSM 20707]
          Length = 206

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 9/163 (5%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
            A  A      I +DTE+  +  + +R  + ++QLS  +    + RI       P L G+
Sbjct: 33  SAVAALEQCAIIGMDTESKPVFKKYERQSVALIQLSS-ESCCYLFRINKIGI-PPRLQGL 90

Query: 70  LVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELL 127
           L  E   K+      D   L      +  +     +   RLT  Y  +  GL+     L 
Sbjct: 91  LEREDILKVGLDLCGDRRQLRRFSPELHPQGFVDLQ---RLTPAYGIHDLGLQKIYAILF 147

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           G  ISK  Q ++W A  L+  Q  YAA D      +  +   +
Sbjct: 148 GEKISKRAQLTNWEAATLTPAQQSYAALDAYACLRIYHRLESE 190


>gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
          Length = 944

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 24/173 (13%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM---------L 70
           A D ET    P    +C   L+  +G      +        + AP L+           L
Sbjct: 370 AYDCETTSEDPLNAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAFKDAQRAVTKL 429

Query: 71  VDEKREKIFHYGRFDIAVLF--YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
            D K   I H G+FDI               +F T IA+ L     + +G+    + +LG
Sbjct: 430 FDSKMTLIMHNGKFDIQAALSSKLASGISANLFDTMIAAWLLDPARSSYGMDKLAESILG 489

Query: 129 I------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +      ++ K  Q  ++S   L++    YAA D         +F   L++  
Sbjct: 490 VKTIRFKDLVKTGQ--NFSDIPLNEA-CPYAAEDADITFRFYKKFLPLLKKNN 539


>gi|221503925|gb|EEE29602.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii VEG]
          Length = 1048

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 47/194 (24%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREK 77
            +A+D E    +P      ++ L+       +  +             L  +  +    K
Sbjct: 811 VVALDLE--WTLPHAA--SVLSLATESRVFLVDLVNDNPVYKATLLQMLRWLFANPFIAK 866

Query: 78  IFHYGRFDIAVLFYTFGVRVRP---VFCTKI--------ASRLTRTYT------------ 114
           + +    DI  LF+  G    P   V C  +        A R  R               
Sbjct: 867 LMYQASGDITKLFFALGAVGSPGALVHCIDLRKGRHLANAERELREGVIAKEHFLEKNEE 926

Query: 115 ------------NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                           L++  +++L  ++ K++Q S+W+   L+  Q  YAA D   L  
Sbjct: 927 ETPERYMRPVKRRFPSLQEMCRQVLHADLDKSEQRSNWNMRPLTASQAHYAALDAYVLI- 985

Query: 163 LRLQFTEKLQRLGR 176
                   L+R G 
Sbjct: 986 ---LLEAALRRQGW 996


>gi|237844623|ref|XP_002371609.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii
           ME49]
 gi|211969273|gb|EEB04469.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii
           ME49]
          Length = 1045

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 47/194 (24%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREK 77
            +A+D E    +P      ++ L+       +  +             L  +  +    K
Sbjct: 808 VVALDLE--WTLPHAA--SVLSLATESRVFLVDLVNDNPVYKATLLQMLRWLFANPFIAK 863

Query: 78  IFHYGRFDIAVLFYTFGVRVRP---VFCTKI--------ASRLTRTYT------------ 114
           + +    DI  LF+  G    P   V C  +        A R  R               
Sbjct: 864 LMYQASGDITKLFFALGAVGSPGALVHCIDLRKGRHLANAERELREGVIAKEHFLEKNEE 923

Query: 115 ------------NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                           L++  +++L  ++ K++Q S+W+   L+  Q  YAA D   L  
Sbjct: 924 ETPERYMRPVKRRFPSLQEMCRQVLHADLDKSEQRSNWNMRPLTASQAHYAALDAYVLI- 982

Query: 163 LRLQFTEKLQRLGR 176
                   L+R G 
Sbjct: 983 ---LLEAALRRQGW 993


>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
 gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
          Length = 932

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGMSFAVAPGEAAYLPLAHDYLDAPAQLDRNWVLATL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L +EK  K+    +FD ++L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 409 KPLLENEKALKVGQNLKFDQSMLARY-GIELRGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERTG 547


>gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
 gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
          Length = 932

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 69/206 (33%), Gaps = 30/206 (14%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----------GQKNAPN---- 65
           V  +AVDTET GL      L  V LS   G    I +                AP     
Sbjct: 344 VGYVAVDTETTGLDELTAELVGVSLSVEPGQACYIPLTHKASRSDDLFGSDDLAPGQMPF 403

Query: 66  ------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
                 L  ML D    KI    ++D  +     G+ V P+  T + S       + HG+
Sbjct: 404 EEALQLLTPMLEDPAILKIGQNMKYDGKIFAQ-LGITVAPIDDTMLMSYAMHAGLHGHGM 462

Query: 120 KDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               +  LG         +   + +  +    + D  + YAA D      L   F  +L 
Sbjct: 463 DTLSERYLGHTPLPIKPLLGSGKSAVTFDKVPMEDA-VPYAAEDADVTLRLWKLFKPQLH 521

Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197
           R   + +  +     +   A+++  G
Sbjct: 522 RAEVTKVYETLERPLVPVLAQMERAG 547


>gi|325297843|ref|YP_004257760.1| 3'-5' exonuclease [Bacteroides salanitronis DSM 18170]
 gi|324317396|gb|ADY35287.1| 3'-5' exonuclease [Bacteroides salanitronis DSM 18170]
          Length = 210

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 20  VDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
              + VDTE             ++ ++Q++  D               P+ +   +    
Sbjct: 44  HSVVGVDTETRPSFKRGTVH--KVALLQIATHDTCFL---FRLNHLGLPDFLEEFLQNNV 98

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            K+    R D A+L        R       ++   + R    +  L+     L G  ISK
Sbjct: 99  LKVGLSLRDDFAMLRKRNQGDPRDGNWI--ELQDYVPRFGIEEKSLQKIYALLFGKKISK 156

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            Q+ S+W AD L++ Q  YAA+D      +     E
Sbjct: 157 TQRLSNWEADVLTEAQQLYAATDAWACVEIYTYLEE 192


>gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
 gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
          Length = 949

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET G  P    L  +  S  +     + + + Q  A         +  +E  
Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132
            K+    ++D+ VL         P+F T IA  + +    +HG+    +  L    I+I 
Sbjct: 436 LKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494

Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173
                  K Q+    +  DL  + +  YA  D      L+    ++L+ 
Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADVTLKLKNVLEKELKE 539


>gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2]
 gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2]
 gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2]
          Length = 949

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET G  P    L  +  S  +     + + + Q  A         +  +E  
Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132
            K+    ++D+ VL         P+F T IA  + +    +HG+    +  L    I+I 
Sbjct: 436 LKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494

Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173
                  K Q+    +  DL  + +  YA  D      L+    ++L+ 
Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADVTLKLKNVLEKELKE 539


>gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
 gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
          Length = 946

 Score = 70.0 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 72/212 (33%), Gaps = 24/212 (11%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   + ++ A      +  A+AVDTET  L   +  L  + LS        +    G  +
Sbjct: 355 IVTRKEELQALVEQLNHAAALAVDTETTSLDTFQAELVGISLSIKPKQAWFVYFGKGGVD 414

Query: 63  ----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQH 117
                  L  +L +    K     ++D+ VL    G+ + PV F T +AS +      +H
Sbjct: 415 RRVALDMLKPVLENPSLRKTGQNLKYDLLVLKKY-GIDINPVAFDTMLASYVLDPEA-KH 472

Query: 118 GLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            L D     L I             K     D    +LSD    YA  D      L+  F
Sbjct: 473 NLDDLALRHLSIKTTTYDELVADGKKKMSILDVPPGELSD----YACQDADLALRLQEVF 528

Query: 168 TEKLQRLGRSDLATS--CCNFLMDRAELDLLG 197
            EKL +               +   A ++  G
Sbjct: 529 KEKLLQEKDLLWLCENIEFPLVPVLATMEYHG 560


>gi|255015322|ref|ZP_05287448.1| hypothetical protein B2_15541 [Bacteroides sp. 2_1_7]
          Length = 193

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 55/171 (32%), Gaps = 21/171 (12%)

Query: 8   EGDIPAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           E D   E   R+   +  DTE             ++ ++Q+S  D          G   +
Sbjct: 34  EADKAVEYLLRF-PIVGFDTETRPSFKKGQRY--KISLMQISTDDTCFLFRLNHIGIPES 90

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG----- 118
             L   L      KI    R D   +     +               + Y  Q G     
Sbjct: 91  --LEKFLKSSSTLKIGLSLRDDFGAIRKRSDIEPANFLD-------LQNYVGQFGIEDAS 141

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           L+     L    ISK Q+ ++W AD L+D Q +YAA D      +     +
Sbjct: 142 LQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALDAWACLRIYNLLNQ 192


>gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4]
 gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4]
          Length = 949

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET G  P    L  +  S  +     + + + Q  A         +  +E  
Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132
            K+    ++D+ VL         P+F T IA  + +    +HG+    +  L    I+I 
Sbjct: 436 LKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494

Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173
                  K Q+    +  DL  + +  YA  D      L+    ++L+ 
Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADVTLKLKNVLEKELKE 539


>gi|195156982|ref|XP_002019375.1| GL12271 [Drosophila persimilis]
 gi|194115966|gb|EDW38009.1| GL12271 [Drosophila persimilis]
          Length = 578

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 8/166 (4%)

Query: 18  RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +    +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L DE  
Sbjct: 71  QSFKVVGFDCEWITVGG-SRRP-VALLQLSSHKGLCALFRLCTMRQIPKDLRDLLEDEAV 128

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    + D   L + +GV V      +  + +        GL    K  +   + K  
Sbjct: 129 IKVGVAPQDDAKKLAHDYGVGVASTLDLRFLAVMAGHKPE--GLGKLAKTHVDFVLDKNW 186

Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           +   S+W A  L   Q+ YAA+D +   A+  + +  L+     D 
Sbjct: 187 RLACSNWEAKQLETSQIDYAANDALAAVAIFQKLSSDLEPRNFWDW 232


>gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2]
 gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2]
          Length = 938

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 69/209 (33%), Gaps = 32/209 (15%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------------AAGQK 61
           R    +AVDTET GL      L  + L    G    I +                A GQ 
Sbjct: 343 RARGYVAVDTETTGLNEMIAELVGISLCVEAGQACYIPLTHKSAASDDLFGSDEMAEGQM 402

Query: 62  NAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
           +       L  +L D    KI    ++D  +      + V P+  T + S       + H
Sbjct: 403 DFDECLAMLKPVLQDPAVIKIGQNMKYDAKIFAR-LDIDVAPIDDTMLMSYAMNAGKHNH 461

Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           G+    +  LG         +   + +  +    + D  ++YAA D      L  QF  +
Sbjct: 462 GMDTLSERYLGHTPIPIKPLLGSGKSAITFDRVPVDDA-VKYAAEDADITLRLWQQFKPQ 520

Query: 171 LQRLGRSDLATSCCN--FLMDRAELDLLG 197
           L  + R            +   A+++  G
Sbjct: 521 LH-MNRVTTVYETMERPLVPVLAQMERHG 548


>gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 915

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 67/202 (33%), Gaps = 28/202 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG---------QKNAPNLV 67
                  A+DTET GL      L  + L+P  G    + +             +    L 
Sbjct: 338 LAGAGRFALDTETTGLDALSADLVGLSLAPAAGEGYYLPVGHSGVEGRQWTTDELKRYLG 397

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L D    KI H  ++D+ +L    G+ V  + F T +A+ L     +   LK      
Sbjct: 398 PVLADVGIGKIAHNAKYDLHIL-AGAGLLVAGLDFDTMLAAHLLGE--SSLSLKGLAFNR 454

Query: 127 LGINI--------SKAQQS--SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           LGI +            Q   S         E   YA +D      L      +L++  +
Sbjct: 455 LGIEMTPITALIGEGRHQKCISTCGLR----ETADYACADADMTLRLYQLLLPELEKENQ 510

Query: 177 SDLATS-CCNFLMDRAELDLLG 197
           S L        +    +++  G
Sbjct: 511 SRLFDEVEMPLVPVIMDMEAAG 532


>gi|198454637|ref|XP_001359658.2| GA19827 [Drosophila pseudoobscura pseudoobscura]
 gi|198132885|gb|EAL28808.2| GA19827 [Drosophila pseudoobscura pseudoobscura]
          Length = 578

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 8/166 (4%)

Query: 18  RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +    +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L DE  
Sbjct: 71  QSFKVVGFDCEWITVGG-SRRP-VALLQLSSHKGLCALFRLCTMRQIPKDLRDLLEDEAV 128

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    + D   L + +GV V      +  + +        GL    K  +   + K  
Sbjct: 129 IKVGVAPQDDAKKLAHDYGVGVASTLDLRFLAVMAGHKPE--GLGKLAKTHVDFVLDKNW 186

Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           +   S+W A  L   Q+ YAA+D +   A+  + +  L+     D 
Sbjct: 187 RLACSNWEAKQLETSQIDYAANDALAAVAIFQKLSSDLEPRNFWDW 232


>gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238]
 gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238]
          Length = 928

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 29/178 (16%)

Query: 21  DAIAVDTETLGLMPRRDRL-----CIV--QLS---------PGDGTVDIIRIAAGQKNAP 64
             +AVDTET  L   R  L     C++  Q             D       +A GQ +  
Sbjct: 341 GYVAVDTETTSLNEMRAELVGVSLCVMAGQACYIPLTHKGGAADDLFGDDALAEGQMDFE 400

Query: 65  N----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           +    L  ML D+   KI    ++D  +     G+ V P+  T + S       N+H + 
Sbjct: 401 DCLAILKPMLEDDSILKIGQNMKYDAKIFKR-VGITVDPIDDTMLMSYAMNAGLNRHSMD 459

Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              ++ LG         +   + +  +    + +  ++YAA D      L      +L
Sbjct: 460 VLSEQYLGHTPIPIKPLLGAGKSAITFDRVPVEEA-VKYAAEDADITLRLWQVLKPQL 516


>gi|150007050|ref|YP_001301793.1| hypothetical protein BDI_0393 [Parabacteroides distasonis ATCC
           8503]
 gi|256840209|ref|ZP_05545717.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262381047|ref|ZP_06074185.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377471|ref|ZP_06987423.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19]
 gi|301311285|ref|ZP_07217213.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3]
 gi|149935474|gb|ABR42171.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256737481|gb|EEU50807.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262296224|gb|EEY84154.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265490|gb|EFI07151.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19]
 gi|300830859|gb|EFK61501.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3]
          Length = 193

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 55/171 (32%), Gaps = 21/171 (12%)

Query: 8   EGDIPAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           E D   E   R+   +  DTE             ++ ++Q+S  D          G   +
Sbjct: 34  EADKAVEYLLRF-PIVGFDTETRPSFKKGQRY--KISLMQISTDDTCFLFRLNHIGIPES 90

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG----- 118
             L   L      KI    R D   +     +               + Y  Q G     
Sbjct: 91  --LEKFLKSSSTLKIGLSLRDDFGAIRKRSDIEPANFLD-------LQNYVGQFGIEDAS 141

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           L+     L    ISK Q+ ++W AD L+D Q +YAA D      +     +
Sbjct: 142 LQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALDAWACLRIYNLLNQ 192


>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 932

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 349 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD   +   +G+ ++ + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERAG 547


>gi|329962096|ref|ZP_08300107.1| 3'-5' exonuclease [Bacteroides fluxus YIT 12057]
 gi|328530744|gb|EGF57602.1| 3'-5' exonuclease [Bacteroides fluxus YIT 12057]
          Length = 231

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 21/172 (12%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + +D+E             ++ ++Q+S  +    + R+       P ++ 
Sbjct: 36  AVTYLKGCPLLGIDSETRPSFTKGHSH--KVALLQVSSEEHCF-LFRLNLTGLTLP-IIT 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-----LKDNL 123
           +L      K+    R D  +L              + A    + Y    G     L+   
Sbjct: 92  LLETPGVTKVGLSLRDDFMMLHKRAPFE-------QRACIELQEYVRTFGIQDKSLQKIY 144

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             L G  ISK+Q+ S+W AD LS+ Q  YAA+D      +  +  E L+R G
Sbjct: 145 GILFGEKISKSQRLSNWEADVLSESQKLYAATDAWACLNIYNKLQE-LKRTG 195


>gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29]
          Length = 478

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           L IN+ K QQ S+WS   L+ EQL YAA DV  L  L     ++L +    +  T  C  
Sbjct: 1   LKINLDKEQQKSNWSG-VLTQEQLIYAAKDVEVLCELDRILKDELCQYSLMEAFTLECKA 59

Query: 187 LMDRAEL 193
           L   A++
Sbjct: 60  LPAMAQM 66


>gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
 gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
          Length = 949

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET G  P    L  +  S  +     + + + Q  A         +  +E  
Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132
            K+    ++D+ VL         P+F T IA  + +    +HG+    +  L    I+I 
Sbjct: 436 LKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494

Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173
                  K Q+    +  DL  + +  YA  D      L+    ++L+ 
Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADVTLKLKNVLEKELKE 539


>gi|159478793|ref|XP_001697485.1| 3'-5' exonuclease [Chlamydomonas reinhardtii]
 gi|158274364|gb|EDP00147.1| 3'-5' exonuclease [Chlamydomonas reinhardtii]
          Length = 253

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 23/130 (17%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-------G 118
           L  +L   +  K+ +  R D   L++  GVR+      ++A    R Y           G
Sbjct: 82  LQEVLECGRVTKLLYDVRCDAEALYHQHGVRLGGAVDLQLAEVAYRRYGPAMRRVGYVVG 141

Query: 119 LKDNLKELLGINISKAQQSS----------------DWSADDLSDEQLQYAASDVVHLHA 162
           L   L+  L   + +  +++                 W    L+ EQ++YA+ DV++LH 
Sbjct: 142 LARALETYLSPELRERWRATRVDKGALRDAYERDPGYWDRRPLTQEQVRYASDDVLYLHH 201

Query: 163 LRLQFTEKLQ 172
           L  QF   LQ
Sbjct: 202 LHAQFKAALQ 211


>gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035]
 gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035]
          Length = 934

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 70/201 (34%), Gaps = 33/201 (16%)

Query: 5   RVHEGD---IPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
            VH  D   + A  A  R    +A DTET  L   +  L  + L+   G    I +A   
Sbjct: 327 YVHVSDRATLDAWIATIRAQGYVAFDTETTSLNEMQADLVGISLATAPGRACYIPVAHKD 386

Query: 61  KNAPNL--------------------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
             A +L                      +L D+   KI    ++D  +L    G+ V P+
Sbjct: 387 GAADDLFGSDARAEGQLPLDEVLNALKPVLEDDAILKIGQNMKYDAKILAAH-GITVAPI 445

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYA 153
             T + S       + HG+    +  L  +       +   + +  +    +++  ++YA
Sbjct: 446 DDTMLMSYALHAGLHGHGMDTLSERYLNHSPIPIRSLLGSGKAAVTFDRVPVAEA-VKYA 504

Query: 154 ASDVVHLHALRLQFTEKLQRL 174
           A D      L L    +L R 
Sbjct: 505 AEDADITLRLWLTLKPQLHRA 525


>gi|212692047|ref|ZP_03300175.1| hypothetical protein BACDOR_01542 [Bacteroides dorei DSM 17855]
 gi|212665439|gb|EEB26011.1| hypothetical protein BACDOR_01542 [Bacteroides dorei DSM 17855]
          Length = 216

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 14/177 (7%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + VDTE             ++ ++Q+S  D           +   PN + 
Sbjct: 37  AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPNSLQ 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +     KI    + D   L     V          ++   + R       L+     L
Sbjct: 92  EFLMSDTLKIGLSLKDDFNSLRKRENVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
               ISK+Q+ S+W AD LS+ Q  YAA+D      +    TE L+R G  ++    
Sbjct: 150 FDQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCLTE-LERTGDYEIKEEE 205


>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
 gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
          Length = 940

 Score = 69.6 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 27/196 (13%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAP----NLVGMLVDEK 74
           D  A DTET G+ P   +  +V +S    +     + + A ++ A     +    L + K
Sbjct: 367 DFFAFDTETDGIDPL--KAGLVGMSFAVKENEAWYVPVPAAREEADKILAHFSPALQNPK 424

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
             KI    +FDI V+         P+F T IA  L      +HG+    +  L    + I
Sbjct: 425 SLKIGQNIKFDILVVRKYGIRIAGPLFDTMIAHYLLNPEL-RHGMDYLAETYLKYKTVRI 483

Query: 132 S--------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
                    K          D+   Q+ +YAA D      L+  FT  L++ G   L   
Sbjct: 484 EELIGPRERKQLTM-----RDVPVVQVAEYAAEDADITLKLKNYFTPCLEKEGLESLFYD 538

Query: 183 -CCNFLMDRAELDLLG 197
                +   AE++  G
Sbjct: 539 IEMPLIYVLAEMEYTG 554


>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
 gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
          Length = 932

 Score = 69.6 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 74/200 (37%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 349 LKAAEVFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLEQL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D++VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 409 KPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIKHDTMLASYVFNSVGGKHDMDSLALR 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +      L+  Q++      YAA D      L  +  E +++  +   
Sbjct: 468 FLQHSCISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKA 527

Query: 180 ATSCCN--FLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 528 IYEEIEVPLIPVMSRIERTG 547


>gi|224023974|ref|ZP_03642340.1| hypothetical protein BACCOPRO_00691 [Bacteroides coprophilus DSM
           18228]
 gi|224017196|gb|EEF75208.1| hypothetical protein BACCOPRO_00691 [Bacteroides coprophilus DSM
           18228]
          Length = 204

 Score = 69.6 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 18/161 (11%)

Query: 23  IAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + VDTET      R    +++ ++Q++  D               P+ +   +     K+
Sbjct: 47  VGVDTET--RPSFRKGMVNQVALLQVATADACFL---FRLNHIGLPDFLEEFLQNDVLKV 101

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCT----KIASRLTRTYTNQHGLKDNLKELLGINISKA 134
               + D  +L        R    T    ++   +      +  L+     L G  ISK 
Sbjct: 102 GLSLKDDFRMLSRRNRQDPR----TGNWVELQDYVPHFGIEEMSLQKIYALLFGEKISKT 157

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q+ S+W A+ L++ Q  YAA+D      +     E+L+R G
Sbjct: 158 QRLSNWEAETLTEAQQLYAATDAWACVRIYEYL-EELRRTG 197


>gi|314122235|ref|NP_001186629.1| exonuclease 3'-5' domain-containing protein 2 [Gallus gallus]
          Length = 621

 Score = 69.6 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 24/191 (12%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVDEKRE 76
             + +D E + +  + + + ++Q++   G   ++R+    A+GQ     L+ ++ D+   
Sbjct: 105 PVLGMDCEWVSVEGKANPVSLLQMASASGLCVLVRLPRLVASGQPVPKTLLDIMADDAVL 164

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGINISKA 134
           K+      D   L   + + V+     +  +   R     N   LK   +++L   + K+
Sbjct: 165 KVGVGCWEDACKLLQDYSLPVKGSVDLRYLAMRQRKDLLHNCLSLKSLAEKVLNCPLDKS 224

Query: 135 --QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD--R 190
              + S+W A++L+ +Q+ YAA D     AL L                     L    +
Sbjct: 225 PHMRCSNWEAEELTQDQVLYAARDAQVSVALFLHLLG--------------FACLPATSK 270

Query: 191 AELDLLGWENV 201
            E  + GWE V
Sbjct: 271 GENSVSGWEKV 281


>gi|330789845|ref|XP_003283009.1| hypothetical protein DICPUDRAFT_146576 [Dictyostelium purpureum]
 gi|325087081|gb|EGC40462.1| hypothetical protein DICPUDRAFT_146576 [Dictyostelium purpureum]
          Length = 662

 Score = 69.6 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 11/153 (7%)

Query: 23  IAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           I  D E       ++      ++ ++QLS     V +I+I+       +L  +LVD +  
Sbjct: 172 IGFDAEWSNQNQYQECEGYPHKVALIQLSS-KTDVYLIQISQMPTIPQSLEQILVDPRLI 230

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ- 135
           K+      D A +F +F +  +         RLT    N  GL      +L  NI K   
Sbjct: 231 KVGVAISQDAATIFSSFSIVTKGCVDLVPIGRLTNYQGN--GLASLALNVLNANIDKNNL 288

Query: 136 -QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            + S W   +L+ EQ+ YAA D      +    
Sbjct: 289 IRCSHWENKNLTSEQVMYAAIDAWIGREIFETM 321


>gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
 gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
          Length = 932

 Score = 69.6 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 67/200 (33%), Gaps = 33/200 (16%)

Query: 7   HEGDIPAECA----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAG 59
           H  D  A  A          +AVDTET GL     +L  V L    G    I +   A G
Sbjct: 327 HVSDTAALQAWIDRIYEFGYVAVDTETTGLDDMVAQLVGVSLCVEPGKACYIPLIHKARG 386

Query: 60  QKNA-----------------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102
             +                    L  ML D    KI    ++D  +     G+ V P+  
Sbjct: 387 SDDLFGSDDLAEGQIPTEEALRLLTPMLEDPSILKIGQNMKYDSKIFAQ-LGINVAPIDD 445

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAAS 155
           T + S       + HG+    +  L          +   + +  +    L+D  ++YAA 
Sbjct: 446 TMLLSYAMHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADA-VKYAAE 504

Query: 156 DVVHLHALRLQFTEKLQRLG 175
           D      L   F  +L R+G
Sbjct: 505 DADITLRLWQLFKPQLHRVG 524


>gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
 gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
          Length = 936

 Score = 69.6 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 28/183 (15%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPN---------- 65
           R    +AVDTET GL      L  + L    G    I +A  AG  +             
Sbjct: 347 RERGRVAVDTETTGLDEMVVDLVGISLCVEAGEACYIPLAHKAGGDDLFGGEGLSEGQMP 406

Query: 66  -------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  L  +L D    KI    ++D  +L    GV V P+  T + S       + HG
Sbjct: 407 LEEAVAMLKDVLEDPAVLKIGQNMKYDAKILHRY-GVDVAPIDDTMLMSYALHAGLHGHG 465

Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +    +  L          +   + +  +    + D  + YAA D      L   F  +L
Sbjct: 466 MDTLSERYLDHTPIPIKPLLGSGKSAVTFDRVPIEDA-VPYAAEDADITLRLWQTFKPQL 524

Query: 172 QRL 174
            + 
Sbjct: 525 HQE 527


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
          Length = 936

 Score = 69.6 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 24/171 (14%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM---------LVD 72
           D ET    P    +C   L+  +G      +        + AP L+           L D
Sbjct: 364 DCETTSEDPLNAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAFKDAKKAVTKLFD 423

Query: 73  EKREKIFHYGRFDIAVLF--YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI- 129
            K   I H G+FDI               +F T IA+ L     + +G+    + +LG+ 
Sbjct: 424 SKMTLIMHNGKFDIQAALSSKLASGISANLFDTMIAAWLLDPARSSYGMDKLAESILGVK 483

Query: 130 -----NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
                ++ K  Q  ++S   L +    YAA D         +F   L++  
Sbjct: 484 TIRFKDLVKQGQ--NFSDIPLKEA-CPYAAEDADITFRFYKKFLPLLKKNN 531


>gi|321462436|gb|EFX73459.1| hypothetical protein DAPPUDRAFT_325251 [Daphnia pulex]
          Length = 417

 Score = 69.6 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           V  +  D E   +      + ++QL+   G   ++R+        +L  +L + K  K+ 
Sbjct: 36  VPILGFDCEWSNVDGNTQPIALIQLASHQGVCALVRVCCLSTLPESLKNILTNPKILKVG 95

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQS 137
                D + L    G++    +       L   +  +  L      L G  ++K  + + 
Sbjct: 96  VATWEDASKLKRDLGIQFCGGYDV---RHLIFRHPKRVSLLSK-SGLSGTVLNKHFSVRC 151

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           SDW A++LS  Q++YAA D +   A+ L+   + + 
Sbjct: 152 SDWEAENLSTIQVKYAAQDAIASIAICLKLVAETRA 187


>gi|148909381|gb|ABR17789.1| unknown [Picea sitchensis]
          Length = 175

 Score = 69.6 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
            I  D E + L     RLCI+QL+  D    +  +  G          L      K+ H 
Sbjct: 36  VIGFDCEGVDLARY-GRLCIMQLAFEDAVYLVDAVEGGHLLMQACKPALESVYVTKVVHD 94

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLK--ELLGIN-I 131
            + D   L++ +G+++  V  T+IA  L      +             L      G++  
Sbjct: 95  CKRDSEALYFQYGIKLNNVVDTQIAYPLIEEQEGRKWAPDEYISFVGLLADPRYCGVSYA 154

Query: 132 SKAQQSS 138
            K +  +
Sbjct: 155 EKEEVRT 161


>gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
 gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
          Length = 950

 Score = 69.6 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 27/179 (15%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEK 74
            + + A+DTET  L      L  + +S        I  +      +K    L  +L +  
Sbjct: 375 GLSSFALDTETTSLNTFEAELVGISISVKPQEAVFIYCSPEGLKPEKALSILKPVLENPA 434

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            EK     ++DI VL    G+++ P  F T +AS +       H L D  +  L      
Sbjct: 435 IEKWGQNLKYDILVLKNY-GIQLAPTGFDTMLASYVINPE-ETHNLDDLAQRHL------ 486

Query: 134 AQQSSDWS-------------ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             +++ +S                L +    YA  D      L+    ++L+     + 
Sbjct: 487 QYRTTTYSELCGTGKKAVPLRQVPL-EALKNYACQDADIALRLQNTLEKQLKDNQELEW 544


>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
 gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
          Length = 932

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    ++P           L
Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGISFAVAPGEAAYLPLAHDYLDSPAQLDRDWVLATL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD ++L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERTG 547


>gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
 gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
          Length = 950

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 17/192 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVD 72
               D+ +VDTET  L      L  +  S   G    +       +A      L  +L +
Sbjct: 373 LEQADSFSVDTETTSLDTFEAELAGISFSLEPGEAFFVYFGETGLDAKTTVAKLKPLLEN 432

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            +  K     ++DI VL    GV ++PV F T +AS +    + +H L D     L    
Sbjct: 433 PEIGKTGQNLKYDILVLKNY-GVELQPVEFDTMLASYVLDPES-RHNLDDMAALHLSRQT 490

Query: 132 SK-----AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATSC-- 183
            K         S     ++  ++L  YA  D      LR +   KL+     +L   C  
Sbjct: 491 VKYDELVGTGKSAIGIFEVEPQKLSDYACQDADITLKLRGELAAKLEAT--PELLEVCRT 548

Query: 184 CNFLMDRAELDL 195
             F + R   D+
Sbjct: 549 LEFPLVRVLADM 560


>gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48]
 gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48]
          Length = 953

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 71/212 (33%), Gaps = 40/212 (18%)

Query: 18  RYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAGQKN-------------- 62
           R     AVDTET  L       +  V LS   G+   I ++    +              
Sbjct: 356 RAAGVFAVDTETDSLSATASGLVG-VSLSCAPGSGVYIPLSHQSDDGGLALSGDEFKQIA 414

Query: 63  ----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  L  +L D    K+    ++D++V     G+RV P   T + S +     + HG
Sbjct: 415 LVEALAELKPLLEDPTVLKVGQNIKYDLSVFARY-GIRVAPYDDTMLISYVLEGGLHGHG 473

Query: 119 LKDNLKELLGINI------------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           + +  +  LG               +K+ +  D     L     +YAA D      L   
Sbjct: 474 MDELSELHLGHTPIPFKQVAGTGKSAKSFKFVD-----LKPA-TEYAAEDADITLRLWHV 527

Query: 167 FTEKLQRLGRSDLATSCCNFLMD-RAELDLLG 197
              +L +     +  +    +    ++++L G
Sbjct: 528 LKPQLAQKRLLTVYETLERAMPTVLSDMELAG 559


>gi|119601390|gb|EAW80984.1| exonuclease 3'-5' domain-like 2, isoform CRA_a [Homo sapiens]
          Length = 607

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 22/159 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVD 72
                 + +D E +              +   G   ++R+      G+     L+ +L D
Sbjct: 99  LEDFPVLGIDCEWM--------------ASPSGLCVLVRLPKLICGGKTLPRTLLDILAD 144

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT--NQHGLKDNLKELLGIN 130
               K+      D + L   +G+ VR     +  +   R     N   LK   + +L   
Sbjct: 145 GTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFP 204

Query: 131 ISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + K+   + S+W A+ L+++Q+ YAA D     AL L  
Sbjct: 205 LDKSLLLRCSNWDAETLTEDQVIYAARDAQISVALFLHL 243


>gi|189217744|ref|NP_001121313.1| hypothetical protein LOC100158397 [Xenopus laevis]
 gi|115528351|gb|AAI24972.1| LOC100158397 protein [Xenopus laevis]
          Length = 499

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 8/150 (5%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREKIFHY 81
           D E + +  +   + ++Q++   G   ++R+     +       L+ +L +    K+   
Sbjct: 2   DCEWVSVDGKASPVSLLQMASYSGFCVLVRLPQLTSSGCTIPKTLLELLANSGVLKVGVG 61

Query: 82  GRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYT-NQHGLKDNLKELLGINISKAQQ--S 137
            R D + L   +G+ V+       +A R  R    N   LK   + +L   + K+ Q   
Sbjct: 62  CREDSSKLLNDYGLSVKGCVDIRYLAMRHRRDILQNTLSLKSLSETILSFPLDKSFQLRC 121

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           S+W A++ +  Q+ YAA D     AL L  
Sbjct: 122 SNWDAEEFTQNQVLYAARDAQVSVALFLHL 151


>gi|258648581|ref|ZP_05736050.1| 3'-5' exonuclease domain protein [Prevotella tannerae ATCC 51259]
 gi|260851360|gb|EEX71229.1| 3'-5' exonuclease domain protein [Prevotella tannerae ATCC 51259]
          Length = 201

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 19/164 (11%)

Query: 20  VDAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            + + +DTET      R         ++ ++Q++  D    + +++     AP+L+ +L 
Sbjct: 44  SEILGIDTET------RPSFRKGTIHKVALLQVANED-LCCLFQLSCFG-FAPDLIHLLS 95

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           ++  +K+    + D  +L        +     +    +         L+     +    I
Sbjct: 96  NKAIKKVGLSLKDDFFMLSKRHKFDPQNCVDLQ--DYVKEMGIKDMSLQKLFANVFHQRI 153

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           SK+ Q S+W A   +  Q  YAA+D      L  +  ++L+   
Sbjct: 154 SKSAQLSNWEAPIYTQSQKLYAATDAYACLKLYKEL-KRLKETN 196


>gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
 gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
          Length = 949

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 22/170 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET G  P    L  +  S  +     + + A Q+ A         +  +E  
Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPADQEEALKIVNEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    GV+V+ P+F T IA  + +    +HG+    +  L    I+I
Sbjct: 436 LKVGQNIKYDMIVLQNY-GVQVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLRYQTIHI 493

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173
                   K Q+    +  DL+ + + +YA  D      L+    ++L+ 
Sbjct: 494 DELIGPKGKNQK----NMRDLAPKDVYRYACEDADVTLKLKNVLEKELKE 539


>gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1]
 gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1]
          Length = 915

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 22/178 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            R     A DTET GL  ++ +L  +  +        + +A   + AP           L
Sbjct: 330 LRQAPLFAFDTETTGLDAQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLAL 389

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQHGLKDN 122
             +L D  + K+    ++DI +L    G     +    + T + S +  +   +H +   
Sbjct: 390 KPLLEDPAKAKVGQNAKYDINILAN--GSPPIEMRGVAYDTMLESYVLNSTATRHDMDSL 447

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
            ++ L       +  +   A  L+  Q+       YAA D      L      +L + 
Sbjct: 448 AQKYLDHTTIAFEDIAGKGAKQLTFNQITLDKAGPYAAEDADITLRLHHALQARLAQT 505


>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
 gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
 gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
 gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
          Length = 932

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 349 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD   +   +G+ ++ + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERTG 547


>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
 gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
          Length = 932

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 349 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD   +   +G+ ++ + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERTG 547


>gi|241121663|ref|XP_002403291.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215493400|gb|EEC03041.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 609

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 25/145 (17%)

Query: 51  VDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
           V I  +   +    +  L  +L  +  EK+ H  R     L++ F V++  VF T++A  
Sbjct: 196 VFIFDVLTLKDTLFDKGLRQVLESKTIEKVIHGCRHLSDCLYHKFRVQLDNVFDTQVADL 255

Query: 109 L------------TRTYTNQHGLKDNLKELLGINIS--KAQQS---------SDWSADDL 145
                         R  +   G++  L+  L ++    K  +S         + W    L
Sbjct: 256 FIHYNRLGNDRGGCRLPSFVRGVQQCLRHFLHLSHDQLKYTRSRQNQPEGELTVWHQRPL 315

Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170
           S  QL     DV  L  LR    E+
Sbjct: 316 SLRQLDALVKDVAFLPELRRVCQEE 340


>gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501]
 gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501]
          Length = 931

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 24/178 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNL 66
            +  +  A DTET  L  +R  L  V  +   G    + +                   L
Sbjct: 348 LKAAECFAFDTETTSLDAQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLSAL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  + KI  +G++D+ VL +  G+ +R + F T + S +      +H +     +
Sbjct: 408 KPLLEDPAKTKICQHGKYDMNVLMHY-GIEMRGMAFDTMLESYVLDATATRHDMDSLALK 466

Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
            LG       +  D     A  L+ +Q+       YAA D      L      KL++ 
Sbjct: 467 YLGRG---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQTLLGKLEQT 521


>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 963

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 30/216 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A+DTET GL  +   L  +  +   G    + +      AP            
Sbjct: 374 LKKASLFAIDTETDGLDTKTAHLIGISFAVAPGKAAYLPLGHDYPEAPAQLNRDKVLALF 433

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D +  K+    +FD   L   +G++++ + F T + S +  +   +H +    + 
Sbjct: 434 KPLLEDPQALKVGQNLKFD-QSLLANYGIKLQGIAFDTMLESYVFNSVAGRHDMDSLSER 492

Query: 126 LLGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL- 174
            L     K     D          ++   L    + YAA D      L L    KL+   
Sbjct: 493 HLNH---KTLSFEDIAGKGKNQLTFNQIPLEQAAI-YAAEDADVTLRLHLALWPKLKENP 548

Query: 175 GRSDLATS-CCNFLMDRAELDLLGWE-NVDI-FSHS 207
               +        L   + ++  G   + DI  +HS
Sbjct: 549 DLMKVLQEIEMPLLSVLSRMERTGVMIDPDILLNHS 584


>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
 gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
          Length = 930

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET G  P    L  +  S  +     + + A Q+           +  +E  
Sbjct: 357 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPANQEETLKIVNEFRPVFENESS 416

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    GV V+ P+F T IA  + +    +HG+    +  L    I+I
Sbjct: 417 LKVGQNIKYDMIVLQNY-GVEVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHI 474

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DL+ + + +YA  D      L+    ++L+  G   L    
Sbjct: 475 DELIGPKGKNQK----NMRDLAPKDVYRYACEDADVTLKLKNVLEKELKENGTERLFYDI 530

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 531 EMPLVPVLVNIERNG 545


>gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602]
 gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602]
          Length = 934

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 351 LKGSEVFAFDTETDGLDTLTANLIGLSFATEAGKAAYLPVAHDYLDAPVQLDRDEVLKQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK+ K+    +FD  VL     + ++ + F T + S +  + + +H +      
Sbjct: 411 KPILEDEKQLKVGQNLKFDRGVLLRY-DIELKGIAFDTMLESYVLDSVSGRHDMDSLADR 469

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            LG      ++ +    + L+  Q+       YAA D      L      ++  
Sbjct: 470 YLGHKTVSFEEIAGKGKNQLTFNQIALEQAAPYAAEDADVTLQLHQALWPRIAE 523


>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
 gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
 gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
          Length = 932

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 349 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD   +   +G+ ++ + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERTG 547


>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
 gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
          Length = 921

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 26/208 (12%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E ++ A  A  +  D +AVDTET  L      L  +  +   G    + +      AP
Sbjct: 326 LTEAELDAWIAKLKQADLMAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAP 385

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L D K +K+    ++DI++L    G++++ V F T + S +  + 
Sbjct: 386 TQIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAFDTMLESYVFNSV 444

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167
            ++H +     + LG      ++ +   A  L+  Q+       YAA D      L    
Sbjct: 445 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHL 504

Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195
             +L++        +    +    EL L
Sbjct: 505 WPRLEKE-------AELAAMFTEVELPL 525


>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10]
 gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
 gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10]
 gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
 gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
 gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 932

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 349 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD   +   +G+ ++ + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERTG 547


>gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2]
 gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2]
          Length = 956

 Score = 69.3 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 63/183 (34%), Gaps = 28/183 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL--CIVQLSPGDGTVDIIRIAAGQKNAPN--------- 65
            +     A DTET  L      L    V +S        I        AP+         
Sbjct: 374 LKAAGEFAFDTETTSLNYMNAELVGFAVAVSD---KAAYIPFGHNYPGAPDQIDKQLVID 430

Query: 66  -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123
               +L D+  +KI    ++D++VL    G+ +R V F T + S +  +   +H +    
Sbjct: 431 KFKPLLEDDSLKKIGQNLKYDMSVLAEDAGITLRGVAFDTMLESYVLDSVATRHDMDSLA 490

Query: 124 KELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
            + LG    K    +D     A  L+  Q+       YAA D      L      KL+  
Sbjct: 491 LKYLGR---KTISFTDIAGKGAKQLTFNQIGLHEASPYAAEDADVTLRLHQTLWPKLEAE 547

Query: 175 GRS 177
            R 
Sbjct: 548 DRL 550


>gi|313157179|gb|EFR56609.1| 3'-5' exonuclease [Alistipes sp. HGB5]
          Length = 203

 Score = 69.3 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 64/172 (37%), Gaps = 17/172 (9%)

Query: 4   IRVHEGDI-PAECAARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAA 58
           I  HE DI PA         +  DTET      R     R+ ++QLS       + R+  
Sbjct: 30  IIEHERDIVPACKFLMKQAVVGFDTET--RPSFRPGISYRVSLLQLSTP-QLCFLFRLNK 86

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTN 115
                P L  +L  +   KI        D+  L      R       + IA         
Sbjct: 87  IPLAKPIL-QVLETDSILKI--GADVAGDLRSLRQIRHFRDGGFVDLQSIA---PEWGIE 140

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              L+     +L   +SKAQ+ S+W A  L+D+Q  YAA+D     A+  + 
Sbjct: 141 DKSLRKLSAIVLRQRVSKAQRLSNWEAATLTDKQKLYAATDAWVCTAIYDKL 192


>gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
 gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
          Length = 949

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET G  P    L  +  S  +     + + + Q  A         +  +E  
Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDQDKALKIVNEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132
            K+    ++D+ VL         P+F T IA  + +    +HG+    +  L    I+I 
Sbjct: 436 LKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494

Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173
                  K Q+    +  DL  + +  YA  D      L+    ++L+ 
Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADVTLKLKNVLEKELKE 539


>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
 gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
          Length = 934

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 351 LKQAEVFAFDTETDGLDTLSANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRSWVLTTL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE+  K+    +FD   L   +G+ +R + F T + S +  +   +H +    + 
Sbjct: 411 KPLLEDEQALKVGQNLKFD-KSLLARYGIELRGIAFDTMLESYVLNSVAGRHDMDSLSER 469

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ       
Sbjct: 470 YLNHKTITFEEIAGKGKNQLTFNQIALEQASPYAAEDADVTLQLHLAMWPKLQESEDLLR 529

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 530 VFQQIEMPLLPILSRIERTG 549


>gi|294886215|ref|XP_002771614.1| hypothetical protein Pmar_PMAR014646 [Perkinsus marinus ATCC 50983]
 gi|239875320|gb|EER03430.1| hypothetical protein Pmar_PMAR014646 [Perkinsus marinus ATCC 50983]
          Length = 463

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 44/203 (21%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKN 62
            D+     A    A+AVD    GL   RD      +LC+   S    +V ++ I     +
Sbjct: 263 SDLSEAAEAGEQAAMAVD--FEGLNLSRDGAMSLAQLCL---SSDPRSVYVVDITRLGFH 317

Query: 63  A--------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS---RLTR 111
           A         +L  ++ D + EK+F+  R D+  L+Y F V  + VF  ++A    R  R
Sbjct: 318 AFHATTHTGTSLKSIMEDSRIEKVFYDPRNDVDALYYQFNVAPQNVFDLQLAEVALRRAR 377

Query: 112 TYTNQ--HGL-KDNLKELLGI------------NISK-------AQQSSDWSADDLSDEQ 149
             T +   GL K  ++  + +            +I K             ++   L    
Sbjct: 378 GLTVRYVIGLFKCLVQSEVFVQPGLREFAMWINDIGKALFEPKHGGSYKVFTERPLHPGI 437

Query: 150 LQYAASDVVHLHALRLQFTEKLQ 172
           + YA+ DV +L  L   F + ++
Sbjct: 438 IVYASHDVRYLLPLYDAFHQAVE 460


>gi|115436116|ref|NP_001042816.1| Os01g0300000 [Oryza sativa Japonica Group]
 gi|14495214|dbj|BAB60933.1| unknown protein [Oryza sativa Japonica Group]
 gi|15623802|dbj|BAB67862.1| unknown protein [Oryza sativa Japonica Group]
 gi|113532347|dbj|BAF04730.1| Os01g0300000 [Oryza sativa Japonica Group]
 gi|125525536|gb|EAY73650.1| hypothetical protein OsI_01539 [Oryza sativa Indica Group]
 gi|125570051|gb|EAZ11566.1| hypothetical protein OsJ_01433 [Oryza sativa Japonica Group]
 gi|215686527|dbj|BAG88780.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 201

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 11/156 (7%)

Query: 23  IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + +D E     +       ++ ++QL  G+    ++++    +  P +  +L D     +
Sbjct: 47  VGLDCEWKPNHVSWKT--SKVAVLQLCAGERFCLVLQLFYANRVPPAVADLLGDPSVRLV 104

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIAS--RL-TRTYTNQHGLKDNLKELLGINISK-- 133
                 D A L   +GV        + A   RL       + GLK   +E+LG+ + K  
Sbjct: 105 GIGVGEDAAKLEADYGVWCAAPVDLEDACNRRLGLVGTGRRLGLKGYAREVLGMAMEKPR 164

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
               S+W   +L   Q++YA  D    + L  +   
Sbjct: 165 RVTMSNWEKRELDPAQVEYACIDAYVSYKLGERVLA 200


>gi|229442293|gb|AAI72837.1| Werner syndrome protein [synthetic construct]
          Length = 281

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  +++       L  +L ++  +K        I      L   F
Sbjct: 96  KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A++  +  T    L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 152 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 210

Query: 151 QYAASD 156
            YAA+D
Sbjct: 211 LYAATD 216


>gi|332228984|ref|XP_003263668.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 5
           [Nomascus leucogenys]
 gi|332228986|ref|XP_003263669.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 6
           [Nomascus leucogenys]
 gi|332228988|ref|XP_003263670.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 7
           [Nomascus leucogenys]
          Length = 496

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 44  LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   ++R+      G+     L+ +L D    K+      D + L   +G+ VR 
Sbjct: 1   MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60

Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155
               +  +   R     N   LK   + +L   + K+   + S+W+A+ L+++Q+ YAA 
Sbjct: 61  CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWNAETLTEDQVIYAAR 120

Query: 156 DVVHLHALRLQF 167
           D     AL L  
Sbjct: 121 DAQISVALFLHL 132


>gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
 gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
          Length = 942

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 27/198 (13%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEK 74
             + +  DTET  L P    L  +  S        + +  G++ A      L      + 
Sbjct: 367 AQNRVCFDTETTSLDPLEAELVGIAFSWEAHKGFYLPVPEGREAAGEVLEELRPFFESDT 426

Query: 75  REKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130
            EK+    ++DI VL    G+ VR P+F T +A  L      +H +    +  L      
Sbjct: 427 IEKVGQNLKYDIKVLSTY-GIPVRGPLFDTMLAHYLINP-DMRHNMDVLAETYLNYTPVP 484

Query: 131 ----ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
               I K         + LS      ++Q +YA  D      L   F  +L+     +L 
Sbjct: 485 ISDLIGKK------GKNQLSMRDVPLEDQTEYAVEDADITLQLAQLFGPELREAQTEELF 538

Query: 181 TS-CCNFLMDRAELDLLG 197
                  L   A+++L G
Sbjct: 539 KEIEIPLLRVLADMELEG 556


>gi|319945089|ref|ZP_08019351.1| 3'-5' exonuclease [Lautropia mirabilis ATCC 51599]
 gi|319741659|gb|EFV94084.1| 3'-5' exonuclease [Lautropia mirabilis ATCC 51599]
          Length = 228

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 12/159 (7%)

Query: 19  YVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
            +  +  DTE     +     +D   +VQ +  +    +  +      A  + G+L   +
Sbjct: 32  ALSVVGFDTESKPVFVRGQT-QDGPHLVQFASAE-RAWLFPLQDPAC-AQAVAGLLARPE 88

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFC---TKIASRLTRTYTNQHGLKDNLKELLGINI 131
             K+      D A L   FGV  + +     T  A     +   +  +            
Sbjct: 89  LLKVGFGLAGDRAQLLARFGVAPQGLVDLDQTYRALGYRASLGIRMAMAVTFGRYFEK-- 146

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           SK+  +SDWS   LS  Q +YAA D      +      +
Sbjct: 147 SKSIGTSDWSRQPLSAAQCRYAAHDAWGAFRIYEALCAQ 185


>gi|294953661|ref|XP_002787875.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239902899|gb|EER19671.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 356

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 72/189 (38%), Gaps = 37/189 (19%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNA--------PNLVGMLVDEKREKIFHYGRFDIAV 88
            +LC+   S    +V ++ I     +A         +L  ++ D   EK+F+  R D+  
Sbjct: 155 AQLCL---SSDPKSVYVVDITRLGFHAFHATTHTGTSLKSIMEDTLIEKVFYDPRHDVDA 211

Query: 89  LFYTFGVRVRPVFCTKIAS---RLTRTYTNQ--HGL-KDNLKELLGI------------N 130
           L+Y F V  + VF  ++A    R  R  T +   GL K  ++  + +            +
Sbjct: 212 LYYQFNVAPQNVFDLQLAEVALRRARGLTVRYVIGLFKCLVQSEVFVQPELRDFATRIND 271

Query: 131 ISK-------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           I K             ++   L    + YA+ D  +L  L   FT++L+  G  +     
Sbjct: 272 IGKALFEPKHGGSYKVFTERPLHPGIIVYASHDARYLLPLYDTFTKQLKCAG-DNWYNRV 330

Query: 184 CNFLMDRAE 192
                 RAE
Sbjct: 331 LAASARRAE 339


>gi|332886278|gb|EGK06522.1| hypothetical protein HMPREF9456_00396 [Dysgonomonas mossii DSM
           22836]
          Length = 197

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 10/158 (6%)

Query: 17  ARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
               +AI  DTE        +    ++ ++QLS  D T  + R+      A  L  +LV+
Sbjct: 38  LSKCEAIGFDTETRPAFRKGVTH--QIALMQLSTID-TCFLFRLNLIGFPAC-LAELLVN 93

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
              +KI    + D + +     +        ++ S +       +GL+     L    IS
Sbjct: 94  PAVKKIGLSLKDDFSAIHKRMSLAPANF--VELQSFVKDYGIEDNGLQRIYGILFEKRIS 151

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K Q+ S+W  D LSD Q  YAA D      +  +   K
Sbjct: 152 KGQRLSNWEVDVLSDSQKMYAALDAWACLRIYNELKNK 189


>gi|160876618|ref|YP_001555934.1| 3'-5' exonuclease [Shewanella baltica OS195]
 gi|160862140|gb|ABX50674.1| 3'-5' exonuclease [Shewanella baltica OS195]
 gi|315268815|gb|ADT95668.1| 3'-5' exonuclease [Shewanella baltica OS678]
          Length = 315

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            +    +  DTET       +R     L ++Q++  D    + + A   +    L  +L 
Sbjct: 127 LQAEPVLGFDTET---RASFERGVQHPLSLIQIATAD-ACYLFQHAILGEQFTQLKTVLE 182

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           DE   K+    R D   L   +G+ V        A           G +  +  LLG  I
Sbjct: 183 DENILKVGVGLRSDAQALKRQWGINVTSKLDLNWALAQLGAEKE-MGTRQLVATLLGTRI 241

Query: 132 SK--AQQSSDWSADDLSDEQLQY 152
            K      S+W    LS  Q+ Y
Sbjct: 242 DKPKKITLSNWQHVPLSGAQIDY 264


>gi|321462442|gb|EFX73465.1| hypothetical protein DAPPUDRAFT_325261 [Daphnia pulex]
          Length = 474

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           V  +  D E   +      + ++QL+   G   ++R+        +L  +L + K  K+ 
Sbjct: 36  VPILGFDCEWSNVDGNTQPVALIQLASHQGVCALVRVCCLSTLPESLKNILTNPKILKVG 95

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQS 137
                D + L    G++    +       L   +  +  L      L G  ++K  + + 
Sbjct: 96  VATWEDASKLKRDLGIQFCGGYDV---RHLIFRHPKRVSLLSK-SGLSGTVLNKHFSVRC 151

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           SDW A++LS  Q++YAA D +   A+ L+   + + 
Sbjct: 152 SDWEAENLSTIQVKYAAQDAIASIAICLKLVAETRA 187


>gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22]
 gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A]
 gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22]
          Length = 949

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 20/169 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET G  P    L  +  S  +     + + + +  A         +  +E  
Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132
            K+    ++D+ VL     V   P+F T IA  + +    +HG+    +  L    I+I 
Sbjct: 436 LKVGQNIKYDMIVLQNYGAVVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494

Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173
                  K Q+    +  DL  + +  YA  D      L+    ++L+ 
Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADITLKLKNVLEKELKE 539


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CFN 42]
          Length = 999

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 71/219 (32%), Gaps = 39/219 (17%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA-------- 57
            AAR    IA DTET  L   +  L    ++  D   D          + +A        
Sbjct: 393 AAARDTGLIAFDTETTSLDAMQAELVGFAMAIADNVADPTGTKIRAAYVPLAHKDGVGDL 452

Query: 58  ----------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                       +   P L  +L DE   K+    ++D  +L   +GV  +    T + S
Sbjct: 453 LGGGLAENQIPMRDALPRLKALLEDESVLKVAQNLKYD-YLLMKRYGVETKSFDDTMLIS 511

Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159
            +    T  HG+    ++ LG      K    S     +++      D    YAA D   
Sbjct: 512 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GKANITFDLVDIDRATHYAAEDADV 569

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L L    +L   G + +        L   A ++  G
Sbjct: 570 TLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 608


>gi|118404126|ref|NP_001016454.2| exonuclease 3'-5' domain containing 2 [Xenopus (Silurana)
           tropicalis]
 gi|116284125|gb|AAI24062.1| hypothetical protein LOC549208 [Xenopus (Silurana) tropicalis]
          Length = 612

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 8/155 (5%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKRE 76
             + +D E + +  +   + ++Q++   G   ++R+     +       L+ +L +    
Sbjct: 109 PVLGMDCEWVSVDGKAGPVSLLQMASYSGFCVLVRLPQLTSSGCTIPKTLLELLANNSVL 168

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYT-NQHGLKDNLKELLGINISKA 134
           K+      D + LF  +G+ V+       +A R  R    N   LK   + +L   + K+
Sbjct: 169 KVGVGCWEDSSKLFNDYGLSVKGCVDIRYLAMRHRRDILQNTLSLKSLSETILSFPLDKS 228

Query: 135 QQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            Q   S+W A++ + +Q+ YAA D     AL L  
Sbjct: 229 FQLRCSNWDAEEFTQDQVLYAARDAQVSVALFLHL 263


>gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166]
          Length = 914

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 24/178 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +  +  A DTET  L  +R  L  V  +   G    + +       P           L
Sbjct: 331 LKAAECFAFDTETTSLDAQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLGAL 390

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  + KI  +G++D+ VL +  G+ +R + F T + S +      +H +     +
Sbjct: 391 KPLLEDPAKTKICQHGKYDMNVLMHY-GIEMRGMAFDTMLESYVLDATATRHDMDSLALK 449

Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
            LG       +  D     A  L+ +Q+       YAA D      L      KL++ 
Sbjct: 450 YLGRG---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQTLLGKLEQT 504


>gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 927

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 18/178 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R  D IA DTET  L      L  V  +  +G    + +A    +AP           L
Sbjct: 344 LRSADVIAFDTETDSLDYMEANLVGVSFAIEEGVAAYVPVAHDYMDAPKQLERDWVLEQL 403

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  R K+    ++D +VL    G+ +R + F T +AS +  +   +H +      
Sbjct: 404 KPILEDGSRAKVGQNLKYDASVLARY-GIDMRGIKFDTMLASYVYNSVAGKHDMDSLALR 462

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177
            L  +    +Q +      L+  Q+       YAA D      L  +  + L    + 
Sbjct: 463 FLQHSCISFEQVAGKGKKQLTFNQIDLEQAAPYAAEDADVTFRLHQRLQKSLDASDKL 520


>gi|303286635|ref|XP_003062607.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456124|gb|EEH53426.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 720

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE----K 170
           +  GL    + +LG  + K+ + SDWSA  L++ Q  YAA D   L  +     E    +
Sbjct: 654 DAVGLSHVARVVLGKPLDKSTRMSDWSARPLTERQRHYAALDAWVLVEVMRVLREEHGDE 713

Query: 171 LQRLGR 176
           L RL R
Sbjct: 714 LDRLSR 719


>gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 891

 Score = 68.9 bits (168), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 53/182 (29%), Gaps = 41/182 (22%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAGQKNAPNLVGMLVDE 73
                 I +DTET  L P   +L  + L         I +     G      L  +L + 
Sbjct: 318 LSQQKEICLDTETTDLRPLEAQLVGIGLGVEPKKAWYIPLNGQLNGDFVLSQLKPLLENP 377

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL----- 127
                 H  ++D  VL     + V  + F T +AS L  ++  QH L     EL      
Sbjct: 378 SIGFYGHNFKYDYHVLRNH-NISVANISFDTILASYLLNSHKRQHSLDHLALELFDKVKI 436

Query: 128 ----------------GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                            + + K                  Y   DV +   L+     +L
Sbjct: 437 AIQELIGKGKNQLNMKNVALDKI---------------CHYCCEDVDYTIRLKNILLSQL 481

Query: 172 QR 173
           + 
Sbjct: 482 EE 483


>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
 gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
          Length = 930

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 73/198 (36%), Gaps = 33/198 (16%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-----APNLVGMLVDEKR 75
           + IA DTET G       L  V  SP  G    + I     +        L  +L     
Sbjct: 339 EYIAFDTETSGKNVMESDLVGVSFSPKAGIAYYVPINGFSDDGTKDLLDELSPLLE-GGP 397

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS-- 132
           +KI H  +FD   L+   G+RV P+ F T IA+ L        GLKD     LGI ++  
Sbjct: 398 KKIAHNAKFDYMALYKH-GIRVSPLYFDTSIAAFLLNE--TSVGLKDLAATRLGIQMTTI 454

Query: 133 -------KAQQ-----SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL- 179
                  K Q+     S D  A         YA +D      L     +++      DL 
Sbjct: 455 DSLIGKGKNQKTMLEVSVDECAR--------YACADADMTFRLFTMLEKEIVERKLQDLF 506

Query: 180 ATSCCNFLMDRAELDLLG 197
            T     +   A++++ G
Sbjct: 507 YTLEMPLVPVLADMEMTG 524


>gi|313220222|emb|CBY31081.1| unnamed protein product [Oikopleura dioica]
          Length = 597

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 50/180 (27%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
           Y + + +D E +G      +  ++Q+S     G     I       +    L+  L DE 
Sbjct: 71  YCNFVGLDCEWVGKN----KTALMQISVSTPAGIKCFLIRLCKVDIRICYELMAFLRDED 126

Query: 75  REK------------------IFHYGR---FDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
             K                  IFH      FD+                 +I   +  T 
Sbjct: 127 VVKLGCGIDGDFKRLSEVDFVIFHPATISFFDLR----------------QI---IPATN 167

Query: 114 TNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               GL +  +++LG  ++K  +   S+W AD LS+EQ  YAA D V    +  +  ++L
Sbjct: 168 YQNGGLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAVCALQILGKLIQEL 227


>gi|288802306|ref|ZP_06407746.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18]
 gi|288335273|gb|EFC73708.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18]
          Length = 224

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 13/165 (7%)

Query: 21  DAIAVDTETLGLMP-----RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           D I +DTET    P     +R ++ ++Q    +          G  +   +   L D   
Sbjct: 46  DIIGIDTET---RPVFKKGQRRKVALLQACDREVCFLFRLNLIGVPDC--IKRFLEDTTV 100

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+      D+ +L      +       +    +         L+     +    I+K +
Sbjct: 101 PKVGLSLGDDMLMLHQRLDFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFQERITKRE 158

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           Q S+W  + LSD+Q  YA++D      L  +  E L+  G  +L 
Sbjct: 159 QLSNWENEILSDKQKIYASTDAWTCIKLYERLHE-LKHSGNYELV 202


>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
 gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
          Length = 932

 Score = 68.9 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +    IA DTET  L      L  +  +  +G    + +A     AP           L
Sbjct: 349 LKSAPVIAFDTETDSLDYMVANLVGLSFAIEEGVAAYVPVAHDYIGAPEQLDRQWVLEQL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+   K+    ++D +VL     + ++ + F T +AS +  +   +H +      
Sbjct: 409 KPLLEDDAIAKVGQNLKYDASVLARY-DIELKGIKFDTMLASYVYNSVGGKHDMDSLALR 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            L  +    +Q +      L+  Q+       YAA D      L  +   +L++
Sbjct: 468 FLQHSCISFEQIAGKGKAQLTFNQIDLEQASPYAAEDADVTFRLHQRLNAELEK 521


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 61/215 (28%), Gaps = 46/215 (21%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA------------ 63
           AA      A D ET GL P    L    L+        I +                   
Sbjct: 359 AAIAQGFAAFDCETTGLNPLEAELAGFSLALKAEEAFYIPVKLPPPELQSQAPQPMPLEK 418

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYT--FGVRVRPVFCTKIASRLT--------- 110
               L  +   +    I H G+FD   +     F      +F T IA+ L          
Sbjct: 419 AVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPCAIFDTMIAAWLLDPDRTSFSL 478

Query: 111 ------RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ-LQYAASDVVHLHAL 163
                          KD +         K +  SD     +  EQ + YAA D       
Sbjct: 479 DSLASSLLKLQTIAYKDVV--------PKGKIFSD-----VPYEQAVAYAAEDADITLQF 525

Query: 164 RLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
                 KL+  G  DL  +     L   AE+++ G
Sbjct: 526 YEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAG 560


>gi|237708989|ref|ZP_04539470.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229457051|gb|EEO62772.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 221

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 14/177 (7%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + VDTE             ++ ++Q+S  D           +   P+ + 
Sbjct: 42  AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 96

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +     KI    + D   L     V          ++   + R       L+     L
Sbjct: 97  EFLMSDTLKIGLSLKDDFNSLRKRENVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 154

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
               ISK+Q+ S+W AD LS+ Q  YAA+D      +    TE L+R G  ++    
Sbjct: 155 FDQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCLTE-LERTGDYEIKEEE 210


>gi|239814703|ref|YP_002943613.1| 3'-5' exonuclease [Variovorax paradoxus S110]
 gi|239801280|gb|ACS18347.1| 3'-5' exonuclease [Variovorax paradoxus S110]
          Length = 203

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           +VQ +  +    + ++   + N P +  ++   +  K+      D+ ++     +  + V
Sbjct: 74  VVQFATREM-AWLFQLHRTECN-PVVATLIASTELRKVGFGLSTDLTLIRNRLNIEPKAV 131

Query: 101 FCTKIASRLT-RTYTNQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAASDV 157
           F   I S    R Y    G+K  +  +      K+    +S+W+   L++ Q++YAA+D 
Sbjct: 132 FD--IDSEFRHRGYRKSVGVKAAVALVFNQRFVKSRKATTSNWANRQLTEAQMRYAANDA 189

Query: 158 VHLHALRLQF 167
                +    
Sbjct: 190 YASIRVFDAL 199


>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
 gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
          Length = 930

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 353 AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 412

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 413 LENPNSHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 470

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 471 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 522


>gi|313234915|emb|CBY24860.1| unnamed protein product [Oikopleura dioica]
          Length = 812

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 50/180 (27%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
           Y + + +D E +G      +  ++Q+S     G     I       +    L+  L DE 
Sbjct: 99  YCNYVGLDCEWVGKN----KTALMQISVSTPAGIKCFLIRLCKVDIRICYELMAFLRDED 154

Query: 75  REK------------------IFHYGR---FDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
             K                  IFH      FD+                 +I   +  T 
Sbjct: 155 VVKLGCGIDGDFKRLSEVDFVIFHPATISFFDLR----------------QI---IPATN 195

Query: 114 TNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               GL +  +++LG  ++K  +   S+W AD LS+EQ  YAA D V    +  +  ++L
Sbjct: 196 YQNGGLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAVCALQILGKLIQEL 255


>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
 gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
          Length = 918

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               + IA+DTET  L     +L  +  +   G    + +     +AP           L
Sbjct: 335 LTAAELIAIDTETTSLNYMEAKLVGISFAVEAGKAAYLPLEHDYVDAPEQLDRALVFEKL 394

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE  +K+    ++DI++     G+ +R V F T + S +  +  ++H + D   +
Sbjct: 395 QPLLEDENLKKVGQNLKYDISIFAN-IGITLRGVQFDTMLESYVFNSVASKHNMDDLALK 453

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            LG      ++ +      L+  Q+       YAA D      L      +L++L
Sbjct: 454 YLGHKNISFEEIAGKGVKQLTFNQIPLETAAPYAAEDADITLRLHQHLWSRLEKL 508


>gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047]
 gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047]
          Length = 610

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
              IAVDTET  L      L  +  +  +G    + +     +AP           +  +
Sbjct: 33  AKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAAIKPI 92

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    KI    +FD   +F   G+ ++ V F T + S    + T +H + D  K  LG
Sbjct: 93  LENPNSHKIGQNIKFD-ESIFARHGIELQGVEFDTMLLSYTLNS-TGRHNMDDLAKRYLG 150

Query: 129 INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
                 +  +      L+  Q+      +YAA D      L+     KLQ  
Sbjct: 151 HETIAFESLAGKGKSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEE 202


>gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183]
 gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175]
 gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183]
 gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175]
          Length = 921

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 75/187 (40%), Gaps = 19/187 (10%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E ++ A  A  +  D +AVDTET  L      L  +  +   G    + +      AP
Sbjct: 326 LTEAELDAWIAKLKQADLMAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAP 385

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L D K +K+    ++DI++L    G++++ V F T + S +  + 
Sbjct: 386 TQIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAFDTMLESYVFNSV 444

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167
            ++H +     + LG      ++ +   A  L+  Q+       YAA D      L    
Sbjct: 445 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHL 504

Query: 168 TEKLQRL 174
             +L++ 
Sbjct: 505 WPRLEKE 511


>gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 750

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 167 LKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATL 226

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD   +   +G+ ++ + F T + S +  +   +H +    + 
Sbjct: 227 KPLLEDDKALKVGQNLKFD-KSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAER 285

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 286 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 345

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 346 VFQEIEMPLLPILSRIERTG 365


>gi|293354272|ref|XP_002728460.1| PREDICTED: Werner syndrome protein [Rattus norvegicus]
          Length = 1389

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++   K        I      L  
Sbjct: 138 RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIRK----AGVGIEGDQWKLLR 193

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+R  +       L   +K +LG  +   K+ + S+WS   LS++
Sbjct: 194 DFDVKLESFVELTDVANRKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSDFPLSED 252

Query: 149 QLQYAASDVVHLHALRLQFT 168
           Q  YAA+D      +  +  
Sbjct: 253 QKLYAATDAYAGLIIYQKLE 272


>gi|237724671|ref|ZP_04555152.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265755584|ref|ZP_06090205.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229436866|gb|EEO46943.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|263234190|gb|EEZ19783.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 216

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 14/177 (7%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + VDTE             ++ ++Q+S  D           +   P+ + 
Sbjct: 37  AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +     KI    + D   L     V          ++   + R       L+     L
Sbjct: 92  EFLMSDTLKIGLSLKDDFNSLRKRENVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
               ISK+Q+ S+W AD LS+ Q  YAA+D      +    TE L+R G  ++    
Sbjct: 150 FDQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCLTE-LERTGDYEIKEEE 205


>gi|224824622|ref|ZP_03697729.1| 3'-5' exonuclease [Lutiella nitroferrum 2002]
 gi|224603115|gb|EEG09291.1| 3'-5' exonuclease [Lutiella nitroferrum 2002]
          Length = 222

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 22  AIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            +  DTE       G         +VQL+       +  +     +   L  +L      
Sbjct: 69  VLGFDTESRPTFHKGETSSGPH--LVQLATATH-AYLFPVERLA-DLTRLRMILESPAIR 124

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--HGLKDNLKELLGI--NIS 132
           K+      D+  L    G+    +       RL R        G    +  L G     S
Sbjct: 125 KVGFELGSDVQRLRAKLGIECAALVDI---GRLFRQPGEHRTVGAVQAVARLFGQCFRKS 181

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           K Q +S+W++  LS+ Q  YA +D      +      +L+R GR
Sbjct: 182 KRQSTSNWASPVLSEAQCVYAGNDAYVALQVYH----ELERQGR 221


>gi|293342482|ref|XP_002725246.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog isoform 2
           [Rattus norvegicus]
 gi|149057893|gb|EDM09136.1| rCG43045, isoform CRA_b [Rattus norvegicus]
          Length = 1335

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++   K        I      L  
Sbjct: 88  RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIRK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+R  +       L   +K +LG  +   K+ + S+WS   LS++
Sbjct: 144 DFDVKLESFVELTDVANRKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSDFPLSED 202

Query: 149 QLQYAASDVVHLHALRLQFT 168
           Q  YAA+D      +  +  
Sbjct: 203 QKLYAATDAYAGLIIYQKLE 222


>gi|109504268|ref|XP_001059940.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog isoform 1
           [Rattus norvegicus]
          Length = 1400

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++   K        I      L  
Sbjct: 88  RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIRK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+R  +       L   +K +LG  +   K+ + S+WS   LS++
Sbjct: 144 DFDVKLESFVELTDVANRKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSDFPLSED 202

Query: 149 QLQYAASDVVHLHALRLQFT 168
           Q  YAA+D      +  +  
Sbjct: 203 QKLYAATDAYAGLIIYQKLE 222


>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
 gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
          Length = 921

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 26/208 (12%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E ++ A  A  +  D +AVDTET  L      L  +  +   G    + +      AP
Sbjct: 326 LTEAELDAWIAKLKEADLMAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAP 385

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L D K +K+    ++DI++L    G++++ V F T + S +  + 
Sbjct: 386 TQINKTVALEKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAFDTMLESYVFNSV 444

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167
            ++H +     + LG      ++ +   A  L+  Q+       YAA D      L    
Sbjct: 445 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHL 504

Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195
             +L++        +    +    EL L
Sbjct: 505 WPRLEKE-------AELAAMFTEVELPL 525


>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
 gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
          Length = 934

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + D   E     +  +  A DTET GL      L  +  +   G    + +A    
Sbjct: 336 VTILDEDTFTEWLEKLKKAEVFAFDTETDGLDTLTANLIGLSFAIAPGEAAYLPVAHDYL 395

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP           L  +L DEK  K+    +FD+++L     + +R + F T + S + 
Sbjct: 396 DAPTQLDRAHVLATLKPLLEDEKALKVGQNLKFDMSLLARY-DITLRGIAFDTMLESYVL 454

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALR 164
            +   +H +       LG      ++ +      L+  Q+       YAA D      L 
Sbjct: 455 DSVGGRHDMDSLSDRYLGHKTVTFEEIAGKGKKQLTFNQIALEQAAPYAAEDADVTLQLH 514

Query: 165 LQFTEKLQR 173
           L    +L+ 
Sbjct: 515 LAMWPQLKE 523


>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
 gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
 gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
          Length = 921

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 80/208 (38%), Gaps = 26/208 (12%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E ++ A  A  +  D +AVDTET  L      L  +  +   G    + +      AP
Sbjct: 326 LTEAELDAWIAKLKEADLMAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAP 385

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L D K +K+    ++DI++L    G++++ V F T + S +  + 
Sbjct: 386 TQIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAFDTMLESYVFNSV 444

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167
            ++H +     + LG      ++ +   A  L+  Q+       YAA D      L    
Sbjct: 445 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHL 504

Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195
             +L++        +    +    EL L
Sbjct: 505 WPRLEKE-------AELAAMFTEVELPL 525


>gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
 gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
          Length = 930

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 20/176 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R   + A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 347 LRQAGSFAFDTETDSLDVLSANLVGISCADKPGQACYIPLAHDYLDAPHQLDRQYVLARL 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE   KI    ++DI V+    G+ +R V F T + S +  +   +H +      
Sbjct: 407 QPLLEDEGIAKIGQNLKYDIGVMARY-GITLRGVAFDTMLESYVLNSVAGRHDMDSLSAR 465

Query: 126 LLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            L            K +    ++   L     +YAA D      L       L+  
Sbjct: 466 HLDHKTITFEEIAGKGKGQLTFNQIPLEQA-SEYAAEDADVTLQLHQHLWPMLEGE 520


>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
 gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
          Length = 932

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 22/214 (10%)

Query: 5   RVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            + +    A+   R    +  A DTET GL      L  +  +   G    + +A    +
Sbjct: 335 TILDEQTLADWIERLKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLD 394

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           AP           L  +L DEK  K+    +FD ++L    G+ +R + F T + S +  
Sbjct: 395 APAQLDRQWVLDTLKPLLEDEKALKVGQNLKFDQSMLARY-GIDLRGIAFDTMLESYVLD 453

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165
           +   +H +    +  L       ++ +    + L+  Q+       YAA D      L L
Sbjct: 454 SVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHL 513

Query: 166 QFTEKLQR-LGRSDLATS-CCNFLMDRAELDLLG 197
               KLQ+  G   +        L   + ++  G
Sbjct: 514 VLWPKLQQSEGLKRVFQDIEMPLLPILSRIERTG 547


>gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814]
 gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814]
          Length = 956

 Score = 68.5 bits (167), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 63/214 (29%), Gaps = 37/214 (17%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------AAGQKNAPN----- 65
           A+ V  I VDTET GL      L  V L+ G      I +            AP      
Sbjct: 359 AQAVGVIGVDTETDGLDAIGANLVGVSLALGPNDACYIPLGHTGDGDLLGDGAPEQMDMK 418

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRLTRTYT 114
                L  ML D    K+    ++D+ V            +   P+  T + S       
Sbjct: 419 LALGILKPMLEDPTILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAALEAGQ 478

Query: 115 NQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
           + HG+    +                  K           + +   +YAA D      L 
Sbjct: 479 HNHGMDVLSELHFDHKPIPFKEVAGTGKKQITF---DKVPVPEA-TKYAAEDADVTLRLW 534

Query: 165 LQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
                +L   G + L  +     +   A+++  G
Sbjct: 535 ALLKPRLSAEGMATLYETIERPMVPVVAQMERAG 568


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score = 68.5 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
            + +++DTET G  P    L  +  S  +     + + A ++           +  +EK 
Sbjct: 385 SEILSIDTETTGTEPMDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKS 444

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ +L    GV+V+  +F T +A  + +    +H +    +  L    I+I
Sbjct: 445 MKVGQNIKYDMIILQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 502

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DL  E + +YA  D      L+    ++L+  G   L    
Sbjct: 503 DELIGARGKNQK----NMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEI 558

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 559 EMPLVPVLVNIESNG 573


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
          Length = 921

 Score = 68.5 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 70/203 (34%), Gaps = 26/203 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L     R+  V  +   G    +        AP           L
Sbjct: 338 LKAAPLFAFDTETTSLDYMEARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLSEAVVLGKL 397

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D    K+    ++D  VL     + ++ + + T + S +  +  ++H +    K 
Sbjct: 398 KPLLEDPTCLKVGQNLKYDRNVLLNH-DIDLQGIAYDTMLESYVLNSTASRHDMDSLAKR 456

Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL-G 175
            LG+         D        L+  Q++      YAA D      L      +L+ + G
Sbjct: 457 YLGVE---TTSFEDIAGKGVKQLTFNQIELEQAAPYAAEDADITLRLHQTLWGQLEAVPG 513

Query: 176 RSDLATS-CCNFLMDRAELDLLG 197
            + + +      L   A ++LLG
Sbjct: 514 LAKVFSEIELPLLPVLARMELLG 536


>gi|313673321|ref|YP_004051432.1| 3'-5' exonuclease [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940077|gb|ADR19269.1| 3'-5' exonuclease [Calditerrivibrio nitroreducens DSM 19672]
          Length = 201

 Score = 68.5 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 23  IAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           +  DTET    P   +     L ++Q++  +            K+   +   L + +  K
Sbjct: 53  VGFDTET---KPSFKKKIKNHLSLIQIATENKAFLF--HLKQIKDKSIIFEYLNNPEITK 107

Query: 78  IFHYGRFDIAVLFYTFGVRV-RPVF-CTK-IASRLTRTYTNQHGLKDNLKELLGINISKA 134
           I      DI  +     + + +  F   + IA ++      +  L+      L   I K+
Sbjct: 108 IGAGIADDIKKINELSNIEILKNSFMDLQFIAKQM---NLPRTNLRFLSAYFLNKRIIKS 164

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            Q+S+W    L+ +Q+ YAA+D      +  +  +
Sbjct: 165 SQTSNWDKYPLTPKQMLYAATDAWICLKIYKKILK 199


>gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
          Length = 922

 Score = 68.5 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 25/190 (13%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E  +    A  +    IAVDTET  L      L  +  +   G    + +A     AP
Sbjct: 327 LTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAP 386

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTY 113
                      L  +L D+K +K+    ++DI+VL    G++++  VF T + S +  + 
Sbjct: 387 QQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVFDTMLESYVFNSV 445

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164
            ++H +     + LG    K     D     A  L+  Q+       YAA D      L 
Sbjct: 446 ASRHDMDGLALKYLGH---KNIGFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLH 502

Query: 165 LQFTEKLQRL 174
                +L++ 
Sbjct: 503 QHLWPRLEKE 512


>gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1]
          Length = 915

 Score = 68.5 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 18/176 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET GL  ++ +L  +  +        + +A   + AP           L
Sbjct: 330 LRQAPLFAFDTETTGLDAQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPAQLDREAVLLAL 389

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
             +L D  + K+    ++DI +L      + +R V + T + S +  +   +H +    +
Sbjct: 390 KPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQ 449

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
           + L       +  +   A  L+  Q+       YAA D      L      +L + 
Sbjct: 450 KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHDALQARLAQT 505


>gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium]
          Length = 647

 Score = 68.5 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 18/170 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGML 70
              A+DTET  L  R   +    ++        I +A   + AP           +  +L
Sbjct: 346 KRFAIDTETTSLDYRIAEMVGFSVAFDANDAYYIPLAHDYEGAPEQLNRDAIIQQIKPIL 405

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGI 129
            D   EKI H+ ++D  +     G+ ++   F T +AS +    T +HG+ D  +  L  
Sbjct: 406 EDPSVEKIGHHLKYDAHIFENH-GIHLQGWYFDTMLASYVLNAVTTRHGMDDVARVYLSH 464

Query: 130 NISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
             +  +Q +   A   +  Q++      YAA D    + L      KL+ 
Sbjct: 465 LTTTFEQVAGKGAKQKTFNQIEIETAGHYAAEDAHVTYRLYEVLERKLKE 514


>gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
 gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
          Length = 938

 Score = 68.5 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 29/184 (15%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------------AAGQK 61
           +    +AVDTET  L   +  L  + L+   G    I +                A GQ 
Sbjct: 348 QARGLVAVDTETTSLNEMQAALVGISLAVEPGRACYIPLRHTEGASGDLFSSDALAEGQL 407

Query: 62  NAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
           +       L  ML D+   KI    ++D  +     G+RV P   T + S       + H
Sbjct: 408 DLDAVLGALKPMLEDDAILKIGQNMKYDAKIFARH-GIRVAPFDDTMLMSYALNAGIHGH 466

Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           G+    +  L          +   + +  +    ++D  ++YAA D      L   F  +
Sbjct: 467 GMDTLSERYLSHQPIPIKELLGTGKSAVTFDRVPVADA-VKYAAEDADITLRLWHVFKPQ 525

Query: 171 LQRL 174
           L R 
Sbjct: 526 LHRE 529


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score = 68.5 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 22/206 (10%)

Query: 13  AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65
            E  AR       A DTET  L     R+  V  +   G    +        AP      
Sbjct: 328 DEWLARLQAAPLFAFDTETTSLDYMEARVVGVSFAIEPGKAAYVPFGHDYLGAPVQLTEA 387

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119
                L  +L D  R K+    ++D  VL    G+ ++ + + T + S +  +  ++H +
Sbjct: 388 VVLGKLKPLLEDPARLKVGQNLKYDRNVLLNH-GIELQGIAYDTMLESYVLNSTASRHDM 446

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
               +  L       ++ +      L+  Q++      YAA D      L      KL  
Sbjct: 447 DSLARRYLNAETISFEEIAGKGVKQLTFNQIELEQAAPYAAEDADITLRLHQALWGKLSA 506

Query: 174 L-GRSDLATS-CCNFLMDRAELDLLG 197
             G + + +      L   A ++ LG
Sbjct: 507 EPGLAKVFSEIELPLLPVLARMERLG 532


>gi|153001896|ref|YP_001367577.1| 3'-5' exonuclease [Shewanella baltica OS185]
 gi|151366514|gb|ABS09514.1| 3'-5' exonuclease [Shewanella baltica OS185]
          Length = 315

 Score = 68.1 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 21  DAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +  DTET       +R     L ++Q++  D    + + A   +    L  +L DE  
Sbjct: 131 PVLGFDTET---RASFERGVQHPLSLIQIATAD-ACYLFQHAILGEQFTQLKTVLEDENI 186

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK-- 133
            K+    R D   L   +G+ V        A           G +  +  LLG  I K  
Sbjct: 187 LKVGVGLRSDAQALKRQWGINVASKLDLNWALAQLGAEKE-MGTRQLVATLLGTRIDKPK 245

Query: 134 AQQSSDWSADDLSDEQLQY 152
               S+W    LS  Q+ Y
Sbjct: 246 KITLSNWQHVPLSSAQIDY 264


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score = 68.1 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
            + +++DTET G  P    L  +  S  +     + + A ++           +  +EK 
Sbjct: 378 SEILSIDTETTGTEPMDAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFRPLFENEKS 437

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ +L    GV+V+  +F T +A  + +    +H +    +  L    I+I
Sbjct: 438 MKVGQNIKYDMIILQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 495

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DL  E + +YA  D      L+    ++L+  G   L    
Sbjct: 496 DELIGARGKNQK----NMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEI 551

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 552 EMPLVPVLVNIESNG 566


>gi|195396214|ref|XP_002056727.1| GJ10057 [Drosophila virilis]
 gi|194143436|gb|EDW59839.1| GJ10057 [Drosophila virilis]
          Length = 591

 Score = 68.1 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 8/163 (4%)

Query: 21  DAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
             +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L D+   K+
Sbjct: 72  KVLGFDCEWITVGG-TRRP-VALLQLSSYKGLCALFRLCCMKQIPKDLRELLEDDSVIKV 129

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ-- 136
               + D   L + FGV V      +  + ++       GL    +  L   + K  +  
Sbjct: 130 GVAPQDDAMKLSHDFGVGVASTLDLRYMAIMSGHPAE--GLGKLSQTHLNYVLDKNWRLA 187

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            S+W A  L   QL YAA+D +   A+  + +  L+     D 
Sbjct: 188 CSNWEAPQLEAAQLNYAANDALAAVAIFQKLSRDLEPRTFWDW 230


>gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
 gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
          Length = 949

 Score = 68.1 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 63/192 (32%), Gaps = 21/192 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREK 77
           ++  DTET GL P    L  V  S   G    I     +  A      L         EK
Sbjct: 378 SVCFDTETTGLDPLVAELVGVAFSWEAGKGYYIPFPESKDEAQALIEELRPFFEHTGIEK 437

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130
           I    ++DI VL          +F T +A  L      +H +    +  L          
Sbjct: 438 IGQNLKYDIKVLAKYDVKVKGKLFDTMLAHYLINP-DMRHNMDVLAETYLNYTPVSITEL 496

Query: 131 ISKA--QQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCN 185
           I K    Q S        L D+Q +YA  D      L+  F ++L   G   L       
Sbjct: 497 IGKKGKNQKS---MRDVPL-DQQTEYAVEDADITLQLKQHFEKELDEAGTRKLFNDIEIP 552

Query: 186 FLMDRAELDLLG 197
            L   A +++ G
Sbjct: 553 LLRVLAAMEVEG 564


>gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51]
 gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51]
          Length = 915

 Score = 68.1 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 20/201 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET GL  ++ +L  +  +        + +A   + AP           L
Sbjct: 330 LRQAPLFAFDTETTGLDAQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVLLAL 389

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLK 124
             +L D  + K+    ++DI +L             + T + S +  +   +H +    +
Sbjct: 390 KPLLEDPAKAKVGQNAKYDINILANGSPAIAMRGVAYDTMLESYVLNSTATRHDMDSLAQ 449

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSD 178
           + L       +  +   A  L+  Q+       YAA D      L      +L +     
Sbjct: 450 KYLDHTTIAFEDIAGKGAKQLTFNQIDLDKAGPYAAEDADITLRLHHALQARLAQTPSLQ 509

Query: 179 --LATSCCNFLMDRAELDLLG 197
             L       +   A+++  G
Sbjct: 510 PVLMDIEMPLVPVLAKIERQG 530


>gi|99032230|pdb|2FBT|A Chain A, Wrn Exonuclease
 gi|99032231|pdb|2FBV|A Chain A, Wrn Exonuclease, Mn Complex
 gi|99032232|pdb|2FBX|A Chain A, Wrn Exonuclease, Mg Complex
 gi|99032233|pdb|2FBY|A Chain A, Wrn Exonuclease, Eu Complex
 gi|99032234|pdb|2FC0|A Chain A, Wrn Exonuclease, Mn Dgmp Complex
          Length = 205

 Score = 68.1 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  +++       L  +L ++  +K        I      L   F
Sbjct: 65  KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 120

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A++  +  T    L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 121 DIKLKNFVELTDVANKKLKC-TETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQK 179

Query: 151 QYAASD 156
            YAA+D
Sbjct: 180 LYAATD 185


>gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
 gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
          Length = 935

 Score = 68.1 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 65/213 (30%), Gaps = 59/213 (27%)

Query: 5   RVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRL---CI---------VQL----SP 46
            V   D  A    R      +AVDTET GL   R  L   C+         V L    + 
Sbjct: 330 TVTNADQLAVWIGRIRERGYVAVDTETTGLDEMRADLVGICLATEPGLACYVPLGHKAAE 389

Query: 47  GDGTVDIIRIAAGQ----KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102
           G+G      +A GQ    +    L  +L DE   KI    ++D  +L    G+ V P   
Sbjct: 390 GEGLFATEDLAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYDAKILKR-CGIDVAPCDD 448

Query: 103 TKIASRLTRTYTNQHGLKDNLKELL---------------------GINISKAQQSSDWS 141
           T + S       +QHG+       L                      + I KA +     
Sbjct: 449 TMLISYALNAGLHQHGMDALADRYLSHTCIPIKELLGTGKAMITFDKVPIDKATR----- 503

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                     YAA D      L      +L   
Sbjct: 504 ----------YAAEDADVTLRLWQVLKPQLHAK 526


>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 932

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD ++L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERTG 547


>gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 932

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD ++L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERTG 547


>gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13]
 gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13]
          Length = 933

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 350 LKNAEVFAFDTETDGLDTLTANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRAYVLETL 409

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    +FD+ +L     + +R + F T + S +  +   +H +      
Sbjct: 410 KPLLEDEKALKVGQNLKFDMGLLARY-DITLRGIAFDTMLESYVLDSVGGRHDMDSLSDR 468

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            LG      ++ +      L+  Q+       YAA D      L L    +L+ 
Sbjct: 469 YLGHKTVTFEEIAGKGKKQLTFNQIALEQAAPYAAEDADVTLQLHLAMWPQLKE 522


>gi|91079648|ref|XP_968350.1| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium
           castaneum]
          Length = 1009

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%)

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             +   L   + + LG  + K+ Q S+W    L + QL YAA D   L  +     
Sbjct: 753 QGSGPSLGTLVNQCLGRPLDKSDQFSNWEKRPLRNSQLVYAALDAYCLIEVYDVIK 808


>gi|193786324|dbj|BAG51607.1| unnamed protein product [Homo sapiens]
          Length = 496

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 44  LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   ++R+      G+     L+ +L D    K+      D + L   +G+ VR 
Sbjct: 1   MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60

Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155
               +  +   R     N   LK   + +L   + K+   + S+W A+ L+++Q+ YAA 
Sbjct: 61  CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120

Query: 156 DVVHLHALRLQF 167
           D     AL L  
Sbjct: 121 DAQISVALFLHL 132


>gi|221482990|gb|EEE21314.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii GT1]
          Length = 1048

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 62/194 (31%), Gaps = 47/194 (24%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREK 77
            +A+D E    +P      ++ L+       +  +             L  +  +    K
Sbjct: 811 VVALDLE--WTLPHAA--SVLSLATESRVFLVDLVNDNPVYKATLLQMLRWLFANPFIAK 866

Query: 78  IFHYGRFDIAVLFYTFGVRVRP---VFCTK------------------IAS--------- 107
           + +    DI  LF+  G    P   V C                    IA          
Sbjct: 867 LMYQASGDITKLFFALGAVGSPGALVHCIDLRKGRHLANSERELREGVIAKEHFLEKNEE 926

Query: 108 ----RLTRTYTNQH-GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
               R  R    +   L++  +++L  ++ K++Q S+W+   L+  Q  YAA D   L  
Sbjct: 927 ETPERYMRPVKRRFPSLQEMCRQVLHADLDKSEQRSNWNMRPLTASQAHYAALDAYVLI- 985

Query: 163 LRLQFTEKLQRLGR 176
                   L+R G 
Sbjct: 986 ---LLEAALRRQGW 996


>gi|167536930|ref|XP_001750135.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771297|gb|EDQ84965.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1125

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 11/163 (6%)

Query: 17  ARYVDAIAVDTETL-GLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKN-APNLVGMLVDE 73
           A  V  + +D+E     +   D  + I+QL+  D  V +  +A    +  P L+ +  DE
Sbjct: 461 AGLVPILGLDSEWKPRTLSHADEPVAILQLATRDALVILDTLALPSSSYDPWLLQLWTDE 520

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA------SRLTRTYTNQHGLKDNLKELL 127
              K     + D+  L ++        F    A      +           L      + 
Sbjct: 521 TVVKTGFAFKGDMTKLRHSA--PSARCFEALHAFVELEHAAKAYCADWGASLGSLTATVF 578

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           G +++K  + SDWS   L+  QL YAA D      L  +   +
Sbjct: 579 GRHLNKVDRMSDWSQRPLTKRQLHYAALDAWICVKLLERLLTE 621


>gi|50949589|emb|CAD39094.2| hypothetical protein [Homo sapiens]
          Length = 496

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 44  LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   ++R+      G+     L+ +L D    K+      D + L   +G+ VR 
Sbjct: 1   MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60

Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155
               +  +   R     N   LK   + +L   + K+   + S+W A+ L+++Q+ YAA 
Sbjct: 61  CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120

Query: 156 DVVHLHALRLQF 167
           D     AL L  
Sbjct: 121 DAQISVALFLHL 132


>gi|309361662|emb|CAP29570.2| CBR-MUT-7 protein [Caenorhabditis briggsae AF16]
          Length = 927

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 25/161 (15%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNL------VGMLVDEKREKIFHYGRFDIAVL-- 89
           ++ I+QL   D  + +  +   ++  P+L       G+    K + I    R D+  +  
Sbjct: 467 KIAIIQLFFKDKVLLVDCVELEKEKVPDLLWERFAKGLFETPKLKLIGFDMRNDLEAIIE 526

Query: 90  ---------------FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
                           Y        +    I   +         L D  + LLG  + K 
Sbjct: 527 LPALKGRLNLEQIKNAYDLKRLAENICD--IDMDILELPKKTFKLADLTQYLLGQVLDKT 584

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +Q S+W    L  +Q+ YAA D V +     +  EK Q   
Sbjct: 585 EQCSNWQCRPLRKKQILYAALDAVVVVNTFKKILEKTQERN 625


>gi|158258563|dbj|BAF85252.1| unnamed protein product [Homo sapiens]
          Length = 496

 Score = 68.1 bits (166), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 44  LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   ++R+      G+     L+ +L D    K+      D + L   +G+ VR 
Sbjct: 1   MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60

Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155
               +  +   R     N   LK   + +L   + K+   + S+W A+ L+++Q+ YAA 
Sbjct: 61  CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120

Query: 156 DVVHLHALRLQF 167
           D     AL L  
Sbjct: 121 DAQISVALFLHL 132


>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
 gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
          Length = 948

 Score = 68.1 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 19/191 (9%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL----VGMLVDEKREK 77
           ++  DTET G+     +L  +  S   G    +     Q++A  L          E  EK
Sbjct: 375 SVCFDTETTGIDALNAQLVGMSFSFEKGKAFYVPFPENQEDAQVLADKFKPFFESESIEK 434

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130
           I    ++D+ +L +        +F T IA  L      +H +    +  L  +       
Sbjct: 435 IGQNIKYDLKILSHYGVQIKGKLFDTMIAHYLINP-DMRHNMDVLSETYLKYSPKSIEDL 493

Query: 131 ISK--AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186
           I K    Q S     D+S E++ +YAA D    + L+  F+  L +     L        
Sbjct: 494 IGKKGKNQKS---MRDVSLEEIKEYAAEDADITYQLKQNFSPILDKAETKKLFEEIEIPL 550

Query: 187 LMDRAELDLLG 197
           +   A ++L G
Sbjct: 551 IPVLAAMELEG 561


>gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37]
 gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37]
          Length = 934

 Score = 68.1 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 38/195 (19%)

Query: 13  AECAARYVD--AIAVDTETLGLMPRRDRLC-I--VQLSPGDGTVDIIRIAAGQKN----- 62
               AR +D   +AVDTET GL    + LC +  + L+   G    I +A   ++     
Sbjct: 336 DRWIARAMDLGTVAVDTETTGLN---EMLCDLVGISLAVAPGEACYIPLAHLAEDGGEGL 392

Query: 63  ----------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
                              L  +L D    KI    ++D  +     G+ + P+  T + 
Sbjct: 393 FASDAKAEGQIPMQQALDALKPLLEDASVMKIGQNMKYDAKIFSRY-GIEIAPIDDTMLM 451

Query: 107 SRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           S       +QHG+    +  L          +   +    +    L      YAA D   
Sbjct: 452 SYALHGGEHQHGMDTLSERYLAHTPIPIKDLLGTGKSQITFDRVPLDKA-TGYAAEDADI 510

Query: 160 LHALRLQFTEKLQRL 174
              L L F  +L R 
Sbjct: 511 TLRLALTFKPQLHRA 525


>gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440]
 gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440]
          Length = 915

 Score = 68.1 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 18/176 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            R     A DTET GL  ++ +L  +  +        + +A   + AP           L
Sbjct: 330 LRQAPLFAFDTETTGLDAQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLAL 389

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
             +L D  + K+    ++DI +L      + +R V + T + S +  +   +H +    +
Sbjct: 390 KPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQ 449

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
           + L       +  +   A  L+  Q+       YAA D      L      +L + 
Sbjct: 450 KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHHALQARLAQT 505


>gi|8922631|ref|NP_060669.1| exonuclease 3'-5' domain-containing protein 2 isoform 2 [Homo
           sapiens]
 gi|37999798|sp|Q9NVH0|EXD2_HUMAN RecName: Full=Exonuclease 3'-5' domain-containing protein 2;
           AltName: Full=Exonuclease 3'-5' domain-like-containing
           protein 2
 gi|7022954|dbj|BAA91781.1| unnamed protein product [Homo sapiens]
 gi|12805017|gb|AAH01962.1| Exonuclease 3'-5' domain containing 2 [Homo sapiens]
          Length = 496

 Score = 68.1 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 44  LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   ++R+      G+     L+ +L D    K+      D + L   +G+ VR 
Sbjct: 1   MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60

Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155
               +  +   R     N   LK   + +L   + K+   + S+W A+ L+++Q+ YAA 
Sbjct: 61  CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120

Query: 156 DVVHLHALRLQF 167
           D     AL L  
Sbjct: 121 DAQISVALFLHL 132


>gi|298709045|emb|CBJ30994.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 216

 Score = 68.1 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 10  DIPAECAARYVDAIA-----VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-KNA 63
           D PA+ +A   D  A      D E           C++Q+S       +  +A G   N 
Sbjct: 68  DTPAKLSALAEDLNACREWSFDVEAHNARTYYGLACLLQISTEWKDYVVDPLAEGMWDNM 127

Query: 64  PNLVGMLVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
             L     +    KI H  R  D+  LF  FG  +     T+ A        +  G
Sbjct: 128 GLLRDAFGNPDVLKIGHSIRSLDVPSLFRDFGFVIVNAVDTEEAVHALGGKQSALG 183


>gi|114653647|ref|XP_001141213.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]
 gi|114653649|ref|XP_001141295.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 4
           [Pan troglodytes]
 gi|114653651|ref|XP_001141380.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 5
           [Pan troglodytes]
 gi|114653653|ref|XP_001141459.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes]
          Length = 496

 Score = 67.7 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 44  LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   ++R+      G+     L+ +L D    K+      D + L   +G+ VR 
Sbjct: 1   MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60

Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155
               +  +   R     N   LK   + +L   + K+   + S+W A+ L+++Q+ YAA 
Sbjct: 61  CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120

Query: 156 DVVHLHALRLQF 167
           D     AL L  
Sbjct: 121 DAQISVALFLHL 132


>gi|291386094|ref|XP_002709593.1| PREDICTED: Werner syndrome protein [Oryctolagus cuniculus]
          Length = 1416

 Score = 67.7 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           R+ ++QL   +    +  I++       L  +L ++  +K        I      L   F
Sbjct: 96  RVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAIKK----AGIGIEGDQWKLLRDF 151

Query: 94  GVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
            ++++     T +A+   +       L   +K LLG  +   K+ + S+WS   L+++Q 
Sbjct: 152 DIKLKSFVELTDVANEKLKC-AETWSLNGLVKHLLGKQLLKDKSIRCSNWSNFPLTEDQK 210

Query: 151 QYAASDVVHLHALRLQFT 168
            YAA+D      +  +  
Sbjct: 211 LYAATDAYAGLIIYRKLE 228


>gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15]
 gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15]
          Length = 892

 Score = 67.7 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 49/141 (34%), Gaps = 12/141 (8%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            T+   E         +     AVD ET  L P    +  + LS  D     I +     
Sbjct: 294 RTVATEEEFEALLADLKAAGTFAVDLETTSLNPLEAEIVGISLSYRDHEACYIPVGHFYL 353

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLT 110
            AP           L  +L+D K  K+    ++D  V     G+ +  V+  T +AS L 
Sbjct: 354 GAPEQLPRRRVLDALTPLLIDPKIRKVGQNLKYDYQVFRRH-GIELGGVWCDTMVASYLL 412

Query: 111 RTYTNQHGLKDNLKELLGINI 131
               + HGL     E L   +
Sbjct: 413 NPVRSGHGLDSLAVEHLDHKM 433


>gi|37999725|sp|Q8VEG4|EXD2_MOUSE RecName: Full=Exonuclease 3'-5' domain-containing protein 2;
           AltName: Full=Exonuclease 3'-5' domain-like-containing
           protein 2
 gi|17391198|gb|AAH18508.1| Exonuclease 3''-5'' domain-like 2 [Mus musculus]
 gi|74189569|dbj|BAE36791.1| unnamed protein product [Mus musculus]
 gi|74196573|dbj|BAE34403.1| unnamed protein product [Mus musculus]
 gi|74198515|dbj|BAE39739.1| unnamed protein product [Mus musculus]
          Length = 496

 Score = 67.7 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 14/135 (10%)

Query: 44  LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   ++R+      G+     L+ +L D    K+      D   L   +G+ VR 
Sbjct: 1   MASPSGFCALVRLPRLIYGGRTLPRTLLDILADGAILKVGVGCSEDANKLLQDYGLIVRG 60

Query: 100 VFCTKIASRLTRTYTNQH-----GLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQY 152
                    L     N        LK   + +L   + K+   + S+W A++L+++Q+ Y
Sbjct: 61  CLD---LRYLAMKQGNNILCNGLSLKSLAETILNFPLDKSLLLRCSNWDAENLTEDQVTY 117

Query: 153 AASDVVHLHALRLQF 167
           AA D     AL L  
Sbjct: 118 AARDAQISVALFLHL 132


>gi|255075999|ref|XP_002501674.1| predicted protein [Micromonas sp. RCC299]
 gi|226516938|gb|ACO62932.1| predicted protein [Micromonas sp. RCC299]
          Length = 725

 Score = 67.7 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT----EKLQ 172
            GL      +LG  + KA + SDWS   L+  Q+ YAA D   L  L         E+L+
Sbjct: 655 VGLSHLTAAVLGKPLDKATRMSDWSKRPLTPRQVTYAALDAWVLVELMRTLRENHAEELE 714

Query: 173 RL 174
           RL
Sbjct: 715 RL 716


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score = 67.7 bits (165), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 70/219 (31%), Gaps = 39/219 (17%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRI--------- 56
             AR    +A DTET  L   +  L    L+  D T D          + +         
Sbjct: 410 ADARVTGLVAFDTETTSLDAMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVGDL 469

Query: 57  ---------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                       +   P L  +L DE   K+    ++D  +L   +G+  R    T + S
Sbjct: 470 LGGGLAENQIPMRDALPRLKALLEDEAVLKVAQNLKYD-YLLLKRYGIETRSFDDTMLIS 528

Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159
            +    T  HG+    ++ LG      K    S     +++      D    YAA D   
Sbjct: 529 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GKANVTFDLVDIDRATHYAAEDAEV 586

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L L    +L   G + +        L   A ++  G
Sbjct: 587 TLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 625


>gi|307186805|gb|EFN72228.1| Werner syndrome ATP-dependent helicase [Camponotus floridanus]
          Length = 232

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 14/158 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +  D E           +  +VQ+ P      ++ I +  K     V +L   K   + 
Sbjct: 72  PLGFDLEWPF-SFQTGSGKTALVQICPDVNVCYLLHIYSLNKLPAAFVELLCHPKVMLVG 130

Query: 80  HYGRFDIAVLFYTFGVRVRP------VFCTKIA-SRLTRTYTNQHGLKDNLKELLGINIS 132
              + D+  L   F            + C   A  RL R+   +  L+     +L   I 
Sbjct: 131 VNIKNDLRKLERDFKEFPAQKIVDNCLDCGPFANQRLLRSG--RWSLERLTTLVLKKKID 188

Query: 133 K--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           K    + S W    LSD Q  YAA+D      +  +  
Sbjct: 189 KNPEVRRSKWHVQPLSDAQKIYAATDAYVSLLIYRELE 226


>gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
 gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
          Length = 920

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76
           +++++DTET         L  +  S  +     + + A  + A         +   +K  
Sbjct: 348 ESVSIDTETTSTDAISAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPLYESDKIM 407

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDN-LKEL 126
           KI    ++D  VL          +F T IA  L +   +           G +   ++EL
Sbjct: 408 KIGQNIKYDYEVLTRYGVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLLGYQTIHIEEL 467

Query: 127 LGINISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
           LG    K +     +  DLS   + +YAA D      L+     +L+ LG  +L  +   
Sbjct: 468 LGPKGKKQK-----NMRDLSPTDIYEYAAEDADITLRLKNVLEPRLKELGVEELFWNIEM 522

Query: 185 NFLMDRAELDLLG 197
             +   A+++L G
Sbjct: 523 PLVRVLADMELNG 535


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
            + +++DTET G  P    L  +  S  +     + + A +  A         +  +E  
Sbjct: 378 TEILSIDTETTGTEPMEAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFRPLYENENS 437

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    GV+V+  +F T +A  + +    +H +    +  L    I+I
Sbjct: 438 MKVGQNIKYDMIVLQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLRYRTIHI 495

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    S  DL  E + +YA  D      L+    ++L++     L    
Sbjct: 496 DELIGSRGKNQK----SMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAEHLFYEI 551

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 552 EMPLVPVLVNIESNG 566


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
          Length = 931

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 23/203 (11%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNL 66
           +  +  A+     ++DTET G+ P    L  +  S  +     + + A ++ A       
Sbjct: 351 LAEKLLAQ--KFFSLDTETTGIDPITAELVGMSFSFAENQAFYVPVPANREEALTIVNIF 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
                +    KI    ++D+ +L          +F T IA  + +    +HG+    +  
Sbjct: 409 KPAFENPDSLKIGQNIKYDLIMLANYGVTLKGKMFDTMIAHYVLQPEL-RHGMDYLAEIY 467

Query: 127 LG---INIS-------KAQQSSDWSADDL-SDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           L    I I        K Q     +  DL  +   +YA  D      L+     +L+  G
Sbjct: 468 LKYETIKIEELIGAKGKKQG----NMRDLAPEAVYKYACEDADVTLKLKQVLENELETNG 523

Query: 176 RSDLATS-CCNFLMDRAELDLLG 197
              L        +   A ++  G
Sbjct: 524 VKKLFEEIEMPLVPVLAYMERNG 546


>gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CNPAF512]
          Length = 997

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 70/219 (31%), Gaps = 39/219 (17%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA-------- 57
             AR    +A DTET  L   +  L    ++  D   D          + +A        
Sbjct: 391 ADARDTGLVAFDTETTSLDAMQAELVGFSMAIADNVADPSGTKIRAAYVPLAHKNGVGDL 450

Query: 58  ----------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                       +   P L  +L DE   K+    ++D  +L   +G+  +    T + S
Sbjct: 451 LGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETKSFDDTMLIS 509

Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159
            +    T  HG+    ++ LG      K    S     +++      D    YAA D   
Sbjct: 510 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GRANVTFDLVDIDRATHYAAEDADV 567

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L L    +L   G + +        L   A ++  G
Sbjct: 568 TLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 606


>gi|297695398|ref|XP_002824930.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           isoform 4 [Pongo abelii]
 gi|297695400|ref|XP_002824931.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           isoform 5 [Pongo abelii]
          Length = 496

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 44  LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   ++R+      G+     L+ +L D    K+      D + L   +G+ VR 
Sbjct: 1   MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60

Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155
               +  +   R     N   LK   + +L   + K+   + S+W A+ L+++Q+ YAA 
Sbjct: 61  CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120

Query: 156 DVVHLHALRLQF 167
           D     AL L  
Sbjct: 121 DAQISVALFLHL 132


>gi|302673415|ref|XP_003026394.1| hypothetical protein SCHCODRAFT_114457 [Schizophyllum commune H4-8]
 gi|300100076|gb|EFI91491.1| hypothetical protein SCHCODRAFT_114457 [Schizophyllum commune H4-8]
          Length = 357

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           L ++ ++  DG V    + A       L+ +  D    K+    + D  ++   F V V 
Sbjct: 86  LRLLTIAR-DGVVIAFDLVALGAIPGRLIEIFADPTIIKVGIELKSDCILILRHFAVAVY 144

Query: 99  P------VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
                  ++ +   S      T+   L D  +  +G+ I K  Q SDW    L++EQ+ Y
Sbjct: 145 NGWELSQLWKSMHPSIEAGPLTSHISLDDMARITVGVRIMKEMQRSDWGTSVLTEEQIDY 204

Query: 153 AASDVVHLHAL 163
           A  D   L  +
Sbjct: 205 ALIDAYMLIPM 215


>gi|297307109|ref|NP_001137329.2| Werner syndrome [Bos taurus]
          Length = 1404

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 21  DAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           D +  D E                 R+ ++QL   +    +  I++       L  +L +
Sbjct: 75  DVVGFDIE-------WPPFKKGTLSRVALIQLCVAESKCYLFHISSMSGFPQGLKMLLEN 127

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131
           E  +K       D   L   F + ++ +   T +A+   +       L   +K L G  +
Sbjct: 128 EAIKKAGVGIEQDQWKLLRDFDINLKSIVELTDVANEKLKC-IETWSLNGLVKYLFGKQL 186

Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
              ++ + SDWS   L+++Q  YAA+D      +  +  
Sbjct: 187 LKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQKLA 225


>gi|194902046|ref|XP_001980562.1| GG17221 [Drosophila erecta]
 gi|190652265|gb|EDV49520.1| GG17221 [Drosophila erecta]
          Length = 579

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 18  RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +    +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L D+  
Sbjct: 75  QTFKVLGFDCEWITVG-SSRRP-VALLQLSSHRGLCALFRLCHMKQIPKDLRDLLEDDDV 132

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    + D   L + +GV V      +    +        GL    K  L   + K  
Sbjct: 133 IKVGVAPQEDAVKLSHDYGVGVASTLDLRFLCVMAGHKPE--GLGKLSKTHLNFTLDKHW 190

Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +   S+W A +L  +QL YAA+D +   A+  +    LQ
Sbjct: 191 RLACSNWEAKNLEPKQLDYAANDALMAVAIYQKLCRDLQ 229


>gi|302346700|ref|YP_003814998.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845]
 gi|302150614|gb|ADK96875.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845]
          Length = 217

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 13/165 (7%)

Query: 21  DAIAVDTETLGLMP-----RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           D I +DTET    P     +R ++ ++Q    +          G      +   L D   
Sbjct: 46  DIIGIDTET---RPVFKKGQRRKVALLQACDHEVCFLFRLNLIGVPEC--IKRFLEDTTV 100

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+      D+ +L      +       +    +         L+     +    I+K +
Sbjct: 101 PKVGLSLGDDMLMLHQRLDFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFHERITKRE 158

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           Q S+W  + LSD+Q  YA++D      L  +  E L+  G  +L 
Sbjct: 159 QLSNWENEILSDKQKIYASTDAWTCIKLYERLHE-LKHSGNYELV 202


>gi|294673634|ref|YP_003574250.1| 3'-5' exonuclease [Prevotella ruminicola 23]
 gi|294472246|gb|ADE81635.1| 3'-5' exonuclease [Prevotella ruminicola 23]
          Length = 217

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 12/159 (7%)

Query: 19  YVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
               +  DTET      G+     +  ++Q+S       + R+       P +  +L D 
Sbjct: 44  AQPVLGFDTETRPSFKKGVHH---KCSLLQVST-SNCCFLFRLNHIG-LCPAVKRLLADN 98

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              K+    R D   L       +      +  +R  +       L      + G  ISK
Sbjct: 99  TVTKVGLAWRNDALGLHQLGDFEMGEFVDLQDMAR--KIGIEDQSLAKLYANVFGERISK 156

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            +Q ++W  D L D Q +YAA+D      L  +F   ++
Sbjct: 157 REQLTNWERDVLDDHQKRYAATDAWACVQLYNEFKRMIE 195


>gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511]
 gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511]
          Length = 904

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 20/193 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-REKIF- 79
            +A DTET GL  R  ++     +  +     + +A         V +   +K  EK+  
Sbjct: 335 VVAFDTETTGLDTRSAKMVGFSFAFEEEKAYYVPVAHSYLGVGPQVSLEAAKKAIEKLMR 394

Query: 80  H-----YGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           H       +FD+++L+    +    P   T I + L     ++ GL    ++ LG  + K
Sbjct: 395 HRIVGQNLKFDLSLLYSHLEMEPIEPEADTMILAWLLDP-GSRVGLDILAQKFLGYQM-K 452

Query: 134 AQQSS-----DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS----CC 184
           + + +     D+S+  L +    YAA D      L  + TE  ++ G   L         
Sbjct: 453 SFKETVKKGEDFSSVALEEA-AFYAAEDAWATRQLYFRLTELFKKGGLEHLLKEAKEVEF 511

Query: 185 NFLMDRAELDLLG 197
            F+     ++ LG
Sbjct: 512 PFINVLIAMERLG 524


>gi|260911820|ref|ZP_05918387.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634031|gb|EEX52154.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 207

 Score = 67.7 bits (165), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 21/172 (12%)

Query: 21  DAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           D + VDTET    P   +     + ++Q+S  +          G    P ++ +L +   
Sbjct: 46  DILGVDTET---RPSFKKGESHMVSLLQVSTSNTCFLFRLNHIGIT--PAILRLLENTTV 100

Query: 76  EKI---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINI 131
             +    H    D+  L    G         +    L          L+     L    I
Sbjct: 101 PMVGLSLHD---DMLSLHKRVGFTPGNFIDLQ---DLVGELGIEDLSLQKLYANLFHQKI 154

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           SK Q+ ++W +D L+D+Q  YAA D      L  +   +L+  G  +L  + 
Sbjct: 155 SKRQRLTNWDSDVLNDKQKAYAALDAWACINLYKEIL-RLKNSGDYELVINE 205


>gi|150006113|ref|YP_001300857.1| hypothetical protein BVU_3624 [Bacteroides vulgatus ATCC 8482]
 gi|149934537|gb|ABR41235.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 216

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + VDTE             ++ ++Q+S  D           +   P+ + 
Sbjct: 37  AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +     KI    + D   L     V          ++   + R       L+     L
Sbjct: 92  EFLMSNTLKIGLSLKDDFNSLRKREDVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            G  ISK+Q+ S+W A+ LS+ Q  YAA+D      +    TE L+R G
Sbjct: 150 FGQKISKSQRLSNWEAEVLSEGQKLYAATDAWACVEIYNCLTE-LERTG 197


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLV 71
            +A DTET  L P   R+  +  S   G    I +      A            L     
Sbjct: 351 PVAFDTETDSLEPMNARIVGLSFSVKPGVGYYIPLTHQDLTAEPQLPLAEVLAFLKPWFE 410

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGIN 130
           D    KI    ++D+ V+     V V+ +F  T +AS +   +   HG+       L  N
Sbjct: 411 DSDSPKIAQNAKYDLHVMANH-DVWVKGLFEDTMLASYILEAHKP-HGMDALALRWLNYN 468

Query: 131 ISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
             K ++ +   A  ++ +Q+      +YAA D      L      +L +
Sbjct: 469 TIKYEEVAGKGASQITFDQVPIDTATKYAAEDAEVTLRLAHALKAELDK 517


>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
 gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
          Length = 922

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 25/190 (13%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E  +    A  +    IAVDTET  L      L  +  +   G    + +A     AP
Sbjct: 327 LTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAP 386

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTY 113
                      L  +L D+K +K+    ++DI+VL    G++++  VF T + S +  + 
Sbjct: 387 QQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVFDTMLESYVFNSV 445

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164
            ++H +     + LG    K     D     A  L+  Q+       YAA D      L 
Sbjct: 446 ASRHDMDGLAIKYLGH---KNIGFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLH 502

Query: 165 LQFTEKLQRL 174
                +L++ 
Sbjct: 503 QHLWPRLEKE 512


>gi|268573488|ref|XP_002641721.1| C. briggsae CBR-MUT-7 protein [Caenorhabditis briggsae]
          Length = 896

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 25/161 (15%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNL------VGMLVDEKREKIFHYGRFDIAVL-- 89
           ++ I+QL   D  + +  +   ++  P+L       G+    K + I    R D+  +  
Sbjct: 448 KIAIIQLFFKDKVLLVDCVELEKEKVPDLLWERFAKGLFETPKLKLIGFDMRNDLEAIIE 507

Query: 90  ---------------FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
                           Y        +    I   +         L D  + LLG  + K 
Sbjct: 508 LPALKGRLNLEQIKNAYDLKRLAENICD--IDMDILELPKKTFKLADLTQYLLGQVLDKT 565

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +Q S+W    L  +Q+ YAA D V +     +  EK Q   
Sbjct: 566 EQCSNWQCRPLRKKQILYAALDAVVVVNTFKKILEKTQERN 606


>gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
 gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
          Length = 935

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 61/184 (33%), Gaps = 29/184 (15%)

Query: 18  RYVDAIAVDTETLGLMPRRD-----RLCIV--QLS---------PGDGTVDIIRIAAGQ- 60
           R    +AVDTET GL           LC+V  Q             D       +A GQ 
Sbjct: 345 REHGYVAVDTETTGLNEMIADLVGICLCVVPGQACYVPLTHKAGNSDDLFGSDDLAEGQM 404

Query: 61  ---KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D+   KI    ++D  +     G+ + P+  T + S       + H
Sbjct: 405 PLETALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDITPIDDTMLLSYALHGGMHGH 463

Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           G+    +  L          +   + +  +    + D    YAA D      L  QF  +
Sbjct: 464 GMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVPIDDA-TPYAAEDADITLRLWQQFKPQ 522

Query: 171 LQRL 174
           L + 
Sbjct: 523 LHQK 526


>gi|228471306|ref|ZP_04056112.1| 3- 5 exonuclease domain protein [Porphyromonas uenonis 60-3]
 gi|228306948|gb|EEK16046.1| 3- 5 exonuclease domain protein [Porphyromonas uenonis 60-3]
          Length = 206

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 9/163 (5%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
            A  A      I +DTE+  +  + +R  + ++QLS  +    + RI       P L G+
Sbjct: 33  SAVAALEQCAIIGMDTESKPVFKKYERQSVALIQLSS-ESCCYLFRINKIGI-PPRLQGL 90

Query: 70  LVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELL 127
           L  E   K+      D   L      +  +     +   RLT  Y  +  GL+     L 
Sbjct: 91  LEREDILKVGLDLCGDRRQLRRFSPELHPQGFVDLQ---RLTPAYGIHDLGLQKIYAILF 147

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
              ISK  Q S+W A  L+  Q  YAA D      +  +   +
Sbjct: 148 AEKISKRAQLSNWEAATLTPAQQSYAALDAYACLRIYHRLESE 190


>gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13]
 gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13]
          Length = 901

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 16/177 (9%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---------VGMLVDEKR 75
           +DTET  L     RL  V L+   G    I +     + P L           +  +E  
Sbjct: 329 LDTETDSLNFMEARLVGVSLAYQAGKACYIPLQHQDMSIPQLPLNLVLNKIKSITENENI 388

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    ++D+ VL         P+  T I S +  + T  HG+    K+ L  +    +
Sbjct: 389 TKVGQNIKYDMHVLKNYDVTFKGPIEDTMIMSYVIDS-TESHGMDKLAKKYLDHDCISFE 447

Query: 136 QSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
                    L+ +Q+       YA+ D      L     +K+    + +        
Sbjct: 448 SVVGKGVKQLTFDQVSIDDAYLYASEDADVTLQLYEHLNKKIIADSKLNYIYKEIEI 504


>gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 70/219 (31%), Gaps = 39/219 (17%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRI--------- 56
             AR    +A DTET  L   +  L    L+  D T D          + +         
Sbjct: 410 ADARATGLVAFDTETTSLDAMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVGDL 469

Query: 57  ---------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                       +   P L  +L DE   K+    ++D  +L   +G+  R    T + S
Sbjct: 470 LGGGLADNQIPMRDALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETRSFDDTMLIS 528

Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159
            +    T  HG+    ++ LG      K    S     +++      D    YAA D   
Sbjct: 529 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GKANVTFDLVDIDRATHYAAEDADV 586

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L L    +L   G + +        L   A ++  G
Sbjct: 587 TLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 625


>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
 gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
          Length = 935

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 26/208 (12%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E ++ A  A  +  + +AVDTET  L      L  +  +   G    + +      AP
Sbjct: 340 LTEAELDAWIAKLKKANLMAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAP 399

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L D K +K+    ++DI++L    G++++ V F T + S +  + 
Sbjct: 400 TQIDKTVALEKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAFDTMLESYVFNSV 458

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167
            ++H +     + LG      ++ +   A  L+  Q+       YAA D      L    
Sbjct: 459 ASRHDMDGLALKYLGHKNISFEEIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQHL 518

Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195
             +L++        +    +    EL L
Sbjct: 519 WPRLEKE-------AELAAMFTEVELPL 539


>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
 gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
          Length = 888

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 69/219 (31%), Gaps = 36/219 (16%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           +   D+           A A DTET GL PR   L  + +S        I +       P
Sbjct: 295 LTNEDLEKLALRLEAAPAFAFDTETTGLDPRTAELVGISISLQAHEAFYIPVGHRYLGMP 354

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
           +          L     +    K+    +FD+ +L    G+ V+  +  T + S L    
Sbjct: 355 DQLPRETVLERLRPAFGNPAIRKVGQNLKFDLQILAVA-GLEVQGSWCDTMLCSYLLNPS 413

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLS--------------DEQLQYAASDVVH 159
              HGL    +E L   +         S D+++              ++  +YAA D   
Sbjct: 414 RGGHGLDALAQEHLNHKMI--------SYDEVTGSGKNRICFSEVEVEKATRYAAEDADA 465

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L  +    L+  G   L        +     ++  G
Sbjct: 466 TWLLHEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHG 504


>gi|260592844|ref|ZP_05858302.1| 3'-5' exonuclease domain protein [Prevotella veroralis F0319]
 gi|260535214|gb|EEX17831.1| 3'-5' exonuclease domain protein [Prevotella veroralis F0319]
          Length = 220

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 12/157 (7%)

Query: 21  DAIAVDTETLGLMP-----RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           D I VDTET    P      R ++ ++Q    +          G  +   +   L D   
Sbjct: 46  DIIGVDTET---RPVFKKGHRRKVALLQACDHEVCFLFRLNYIGFPDC--IKRFLEDTTV 100

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+      D+ +L      +       +    +         L+     +    I+K Q
Sbjct: 101 PKVGLSLSDDMLMLHQRANFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFHERITKRQ 158

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           Q S+W  + L+D+Q  YA++D      L  +  E  +
Sbjct: 159 QLSNWENEVLNDKQKLYASTDAWTCIKLYERLHEMKE 195


>gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
 gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
          Length = 1000

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 67/199 (33%), Gaps = 28/199 (14%)

Query: 9   GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---------- 57
            ++ A CA A+    +A DTET  L P +  L  V L+        I +A          
Sbjct: 398 AELKAWCAKAQDQGLLAFDTETNSLDPMQADLVGVSLALSPNEACYIPLAHTGAGDGLFS 457

Query: 58  --------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
                     +     L G+L D+   K+ H  ++D  VL    G+ V P  CT   S  
Sbjct: 458 EGQLPGQIPVRDAIAALKGVLEDKGTLKVGHNVKYDQLVLARH-GIDVAPFDCTMCMSYA 516

Query: 110 TRTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                N HG+ +     LG           K +    +    L      YAA D      
Sbjct: 517 LDAGKNGHGMDELSVLHLGHQPIAFSEVTGKGKGKVTFDKVALEPA-THYAAEDADVTLR 575

Query: 163 LRLQFTEKLQRLGRSDLAT 181
           L      +L   GR+ +  
Sbjct: 576 LWQVLKPRLAAEGRTTVYE 594


>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
 gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
          Length = 932

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRDWVLAQL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD ++L     + +R + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-DINLRGIAFDTMLESYVLNSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKQ 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPVLSRIERTG 547


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
            + +++DTET G  P    L  +  S  +     + + A +  A         +  +E  
Sbjct: 378 TEILSIDTETTGTEPMEAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFRPLYENENS 437

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    GV+V+  +F T +A  + +    +H +    +  L    I+I
Sbjct: 438 MKVGQNIKYDMIVLQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLRYRTIHI 495

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    S  DL  E + +YA  D      L+    ++L++     L    
Sbjct: 496 DELIGSRGKNQK----SMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAEHLFYEI 551

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 552 EMPLVPVLVNIESNG 566


>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
 gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
          Length = 932

 Score = 67.7 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D  A DTET GL    + L  +  +   G    + +A    +AP           L
Sbjct: 349 LKKADVFAFDTETDGLDTLSNNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLATL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD ++L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIAFDTMLESYVLNSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YA+ D      L L    KLQ   G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYASEDADVTLQLHLVLWPKLQESEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERTG 547


>gi|302674116|ref|XP_003026743.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8]
 gi|300100427|gb|EFI91840.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8]
          Length = 297

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 48  DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP------VF 101
           DG V    +         L+ ML D    K+    + D  +L   F V V        ++
Sbjct: 92  DGVVIAFDLLVLAGVPARLIEMLRDPNIIKVGVELKGDSILLLRHFAVPVHNGWEISQLW 151

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
            +   S      T    L D  + +LG+ + K QQ+SDWSA  LS EQ++Y+  D   L 
Sbjct: 152 KSMHPSIEVAPLTTHISLDDMARIVLGVKVDKLQQTSDWSAPALSVEQIEYSYLDAYILV 211

Query: 162 ALRL 165
            +  
Sbjct: 212 PIMH 215


>gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222]
 gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222]
          Length = 940

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 68/197 (34%), Gaps = 30/197 (15%)

Query: 4   IRVHEGDIPAECAARYV--DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----- 56
           I + +  + AE  A       +A+DTET GL   +  L  V L  G G    + +     
Sbjct: 334 ITIRDEAVLAEWLAEIAEKGVVAIDTETTGLDEMQAELVGVSLCTGPGRAAYLPLGHVDG 393

Query: 57  ----------AAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102
                       GQ +       L  +L D    KI    ++D  VL    G+R+ P+  
Sbjct: 394 AADLFGSGARVEGQMDLDRALAMLKPVLEDPSVLKIGQNIKYDWKVLARH-GIRMVPLDD 452

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAAS 155
           T + S       + HG+ +     LG         I   +   ++S   +     +YAA 
Sbjct: 453 TMLLSYAQNAGAHNHGMDELADLYLGHRCLPIKDLIGSGKSQINFSQVAIDKA-SEYAAE 511

Query: 156 DVVHLHALRLQFTEKLQ 172
           D      L      KL 
Sbjct: 512 DAEVTWRLWRHLRPKLA 528


>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
 gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
          Length = 922

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 25/190 (13%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E  +    A  +    IAVDTET  L      L  +  +   G    + +A     AP
Sbjct: 327 LTETQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAP 386

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTY 113
                      L  +L D+K +K+    ++DI+VL    G++++  VF T + S +  + 
Sbjct: 387 QQLDKQFALEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVFDTMLESYVFNSV 445

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164
            ++H +     + LG    K     D     A  L+  Q+       YAA D      L 
Sbjct: 446 ASRHDMDGLALKYLGH---KNIGFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLH 502

Query: 165 LQFTEKLQRL 174
                +L++ 
Sbjct: 503 QHLWPRLEKE 512


>gi|109084066|ref|XP_001108902.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 3
           [Macaca mulatta]
          Length = 495

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 44  LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   +IR+      G+     L+ +L D    K+      D + L   +G+ VR 
Sbjct: 1   MASPSGLCVLIRLPKLICGGKTLPRTLLNILADGTILKVGVGCSEDASKLLQDYGLVVRG 60

Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAAS 155
               +  +   R     N   LK   + +L   + K+   + S+W A+ L+++Q+ YAA 
Sbjct: 61  CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAAR 120

Query: 156 DVVHLHALRLQF 167
           D     AL L  
Sbjct: 121 DAQISVALFLHL 132


>gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
           araneosa HTCC2155]
 gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
           araneosa HTCC2155]
          Length = 1036

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 62/177 (35%), Gaps = 23/177 (12%)

Query: 22  AIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM---LVDEKR 75
            ++ DTET GL  R      L +   +  D     I   +       L  +     D   
Sbjct: 468 PVSFDTETTGLDVRSATIVGLGL---AIRDHHAWYIPFNSDLDKEEILKEIKPFFADSS- 523

Query: 76  EKIF-HYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130
            K F    +FD+ +L +  G+ V+ + F T +AS +       H L       L      
Sbjct: 524 LKFFAQNAKFDLQML-HYAGIEVKNIDFDTLVASFICNPSRQFHDLDSLSLHYLNYRKIS 582

Query: 131 ----ISKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
               I K ++    S  DL  E++  Y   DV     LR +   +L R    +L   
Sbjct: 583 TESLIGKGKKQI--SMADLPVERVATYCCEDVDITLRLRNELEAELHRRDLRNLFDE 637


>gi|154344909|ref|XP_001568396.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065733|emb|CAM43507.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 412

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 40/182 (21%)

Query: 13  AECAARYVDAIAVDTET--LGLMPRRDRLC---IVQLSPGDGTVDIIRIAAGQKNAP--- 64
           A    +    IA+D E        +  +L    +VQ        D++ +           
Sbjct: 95  AVGVLQRSRQIAIDIEAFCTSEATKTPQLGRVSLVQTCS-----DVVPVVFLFDVLSLSV 149

Query: 65  -----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTYTN 115
                 +  +  DE   K+F   R DI  L     +  + V   ++   A +   R+   
Sbjct: 150 HIFTQAIRPVFNDETIRKLFFDCRRDIEALSTQMSLVPKRVLDLQLLFTAVQWKLRSVNR 209

Query: 116 QHGLKDNLKELLGINISKAQQSSD--------------WSADDLSDEQLQYAASDVVHLH 161
           + G+   LK + GI+    +Q  D              W    L +  L+YAA DV H+H
Sbjct: 210 RSGMTYVLKSVAGIH----RQEGDFAVQTAMVVGDRPVWDTRPLPEHFLEYAADDVRHIH 265

Query: 162 AL 163
            L
Sbjct: 266 LL 267


>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
 gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
          Length = 932

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 349 LKKSEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLATL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    +FD ++L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDEKALKVGQNLKFDQSMLARY-GIELRGIAFDTMLESYVLNSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YA+ D      L L    KLQ   G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEEAGPYASEDADVTLQLHLVLWPKLQESEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERTG 547


>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 941

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET    P    L  +  S  +     + + A ++ A         +  +E  
Sbjct: 368 TKILSIDTETTSAEPMEAELVGMSFSDTENQAYYVPVPAEREEALKIVNEFRPLYENETS 427

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++DI VL    G+ V+  +F T IA  + +    +H +    +  L    I+I
Sbjct: 428 MKVGQNIKYDILVLQNY-GMEVKGELFDTMIAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 485

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DL  E++ +YA  D      L+    E+L++ G   L    
Sbjct: 486 DELIGPRGKNQK----NMRDLPPEEVYKYACEDADVTLKLKNVLEEELKKQGVEHLFYEI 541

Query: 183 CCNFLMDRAELDLLG 197
               +   A L+  G
Sbjct: 542 EMPLVRVLANLESNG 556


>gi|194226455|ref|XP_001915839.1| PREDICTED: similar to Werner syndrome ATP-dependent helicase [Equus
           caballus]
          Length = 1478

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
           DR+ ++QL   +    +  I++       L  +L ++  +K+      D   L   F ++
Sbjct: 95  DRVALIQLCVSESKCYLFHISSMSVFPQGLKMLL-NKAIKKVGVGIEGD-QWLLRDFDIK 152

Query: 97  VRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYA 153
           ++     T +A+   +       L   +K L G  +   K+ + SDW+   L+++Q  YA
Sbjct: 153 LKSFVELTDVANEKLKC-AEIWSLNGLVKHLFGKQLLKDKSVRCSDWNNFPLTEDQKLYA 211

Query: 154 ASDVVHLHALRLQFT 168
           A+D      +  +  
Sbjct: 212 ATDAYAGFIIYRKLE 226


>gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703]
          Length = 612

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 29  LKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQL 88

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD ++L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 89  KPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 147

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 148 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 207

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 208 VFQEIEMPLLPILSRIERTG 227


>gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273]
 gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273]
          Length = 945

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 15/192 (7%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEK 74
             D IAVDTET  L      L  + +S        I  A    +       L  +L +  
Sbjct: 370 QTDKIAVDTETTSLDTFEAELAGISISAEPAKARFISFAGTGLDRGRSIEILRPLLENPA 429

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
             K     ++DI VL    G+ + PV F T +AS +      +H L D     L +  +K
Sbjct: 430 IPKTGQNLKYDILVLKNY-GLELGPVGFDTMLASYVLDPDG-KHNLDDMAALHLRLKTTK 487

Query: 134 AQQSSDWSADDL------SDEQLQYAASDVVHLHALRLQFTEKLQRLGR-SDLATS-CCN 185
             + +    + L        +   YA  D      L   FT  L+   R  +L  +    
Sbjct: 488 YDELTGTGKNRLHIYDVEPAKLTDYACQDADLALQLEGAFTRNLEAEPRLMELCQTIEFP 547

Query: 186 FLMDRAELDLLG 197
            +   A+++  G
Sbjct: 548 LVSVLAKMEHQG 559


>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
 gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
          Length = 902

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 18/199 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
                  A DTET      + +L  V  +        + +      AP           L
Sbjct: 320 LADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKEEVLREL 379

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D  +  I    ++D  VL           + T +AS +  + + +H L     + 
Sbjct: 380 KPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKY 439

Query: 127 LGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           LG  + K +  +      +S      D+   YAA D      L  +    +++       
Sbjct: 440 LGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKV 499

Query: 181 --TSCCNFLMDRAELDLLG 197
                   +    ++++ G
Sbjct: 500 FEQIEMPLVPILMQMEMRG 518


>gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
 gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
          Length = 931

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 58/180 (32%), Gaps = 29/180 (16%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV------------- 67
             +AVDTET GL      L  + L    G    I +        +L              
Sbjct: 344 GYVAVDTETTGLDEMVAELVGISLCVQPGKACYIPLIHKTHTGDDLFGSEDLAEGQIPTE 403

Query: 68  -------GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                   ML D    KI    ++D  +     G+ V P+  T + S +     + HG+ 
Sbjct: 404 EALRMLTPMLEDPSIMKIGQNMKYDSKIFAQ-LGITVAPIDDTMLLSYVMHAGLHGHGMD 462

Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              +  LG         +   + +  +    L+   + YAA D      L   F  +L R
Sbjct: 463 ALSERYLGHTPIPIKPLLGSGKSAVTFDKVPLAQA-VPYAAEDADITLRLWQLFKPQLHR 521


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 918

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 26/203 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L     R+  V  +   G    +        AP           L
Sbjct: 335 LKVAPLFAFDTETTSLDYMEARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLTEAVVLGKL 394

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  R K+    ++D  VL     + ++ + + T + S +  +  ++H +    K 
Sbjct: 395 KPLLEDPTRLKVGQNLKYDRNVLLNH-DIDLQGIAYDTMLESYVLNSTASRHDMDSLAKR 453

Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL-G 175
            LG+         D        L+  Q++      YAA D      L      +L+ + G
Sbjct: 454 YLGVE---TTSFEDIAGKGVKQLTFNQIELEQAAPYAAEDADITLRLHQTLWGQLEAVPG 510

Query: 176 RSDLATS-CCNFLMDRAELDLLG 197
              + +      L   A ++LLG
Sbjct: 511 LCQVFSEIELPLLPVLARMELLG 533


>gi|315608200|ref|ZP_07883192.1| 3'-5' exonuclease domain protein [Prevotella buccae ATCC 33574]
 gi|315250169|gb|EFU30166.1| 3'-5' exonuclease domain protein [Prevotella buccae ATCC 33574]
          Length = 215

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 15/168 (8%)

Query: 20  VDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            D +  DTET  +    +  ++ ++Q++  D  +       G     +++ +L D   +K
Sbjct: 45  SDILGFDTETKPVFRRGQHSKVALLQVANRDACILFRLNYTGMT--SDIIRLLEDNTVKK 102

Query: 78  I---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK 133
           I   +H    DI  L      +V      + I   L         L+     L    ISK
Sbjct: 103 IGLSWHD---DILSLQRRKPFQVGSFIDLQDIVGDL---GIEDRSLQKLYANLFQEKISK 156

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            Q+ ++W AD L D Q QYAA+D      L  +  E+L+R G  +L  
Sbjct: 157 NQRLTNWEADVLKDSQKQYAATDAWTCIKLYEEI-ERLKRTGDYELIK 203


>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
 gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
          Length = 949

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 17/191 (8%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEKRE 76
            ++  DTET GL      L  +     +G    + +   +               +++ E
Sbjct: 377 KSVCFDTETTGLDMFTSDLVGMSFCFAEGEAYYVSLPEDKTESKEVLREFKAFFENDRIE 436

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI----- 131
           KI    +FD+ +L+         +F T IA  L +    +HG+    +  L         
Sbjct: 437 KIGQNMKFDLLMLWQYGIELKGKLFDTMIAHYLVQPEL-RHGMDYLAEIYLNYRTIHFED 495

Query: 132 ---SKAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186
              +K +  +D     +  ++   YAA D      L+    ++L+     +L        
Sbjct: 496 LVGAKGKNQAD--IRTVDINKLCDYAAEDADVTFRLKQILEKELKADALENLFYEIEMPL 553

Query: 187 LMDRAELDLLG 197
           +   A ++  G
Sbjct: 554 MQVLATMEHTG 564


>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
 gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
          Length = 902

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 18/199 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
                  A DTET      + +L  V  +        + +      AP           L
Sbjct: 320 LADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKEEVLREL 379

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D  +  I    ++D  VL           + T +AS +  + + +H L     + 
Sbjct: 380 KPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKY 439

Query: 127 LGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           LG  + K +  +      +S      D+   YAA D      L  +    +++       
Sbjct: 440 LGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKV 499

Query: 181 --TSCCNFLMDRAELDLLG 197
                   +    ++++ G
Sbjct: 500 FEQIEMPLVPILMQMEMRG 518


>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
 gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
          Length = 902

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 18/199 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
                  A DTET      + +L  V  +        + +      AP           L
Sbjct: 320 LADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKEEVLREL 379

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D  +  I    ++D  VL           + T +AS +  + + +H L     + 
Sbjct: 380 KPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKY 439

Query: 127 LGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           LG  + K +  +      +S      D+   YAA D      L  +    +++       
Sbjct: 440 LGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKV 499

Query: 181 --TSCCNFLMDRAELDLLG 197
                   +    ++++ G
Sbjct: 500 FEQIEMPLVPILMKMEMRG 518


>gi|145546781|ref|XP_001459073.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124426896|emb|CAK91676.1| unnamed protein product [Paramecium tetraurelia]
          Length = 403

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)

Query: 8   EGDIPAECAAR--YVDAIAVDTETLGLMPRR------DRLCIVQLSPGDGTVDIIRIAAG 59
           E  +  E            +DTE+   +P+       +++C++Q++        I  +A 
Sbjct: 230 EAQLTDEIIEEILNAPQTGIDTESFQEIPQTKFTSRMNKVCLLQIALPQKIF--ILNSAN 287

Query: 60  QKNAPNLVGML---VDEKREKIFHYGRFDIAVLF---YTFGVRVRPVFCTKIASRLTRTY 113
             ++      L         KI    R D   L       GV++  +   +++    + +
Sbjct: 288 LTSSCKYQQFLVKYATSNALKIGQNLRQDFLSLLGQIRASGVQLNQII--ELSELFQQKF 345

Query: 114 TN--QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV---VHLHALRLQ 166
               +  L     +LLG  + K +Q S+W    L + Q+ YAA D    +HL+ L  Q
Sbjct: 346 PQEKKTNLSFQCSKLLGKELDKVEQISNWQRRPLRNAQIHYAALDAYICLHLYNLYKQ 403


>gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 899

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 25/207 (12%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRI--------AAGQKN 62
            A +  D +A+DTET  L P    L    C  Q + GD     + +           Q  
Sbjct: 313 LALKAADVVALDTETTSLDPLHADLVGISCAWQ-AGGDYQAVYVPVGHRDAGPQLDRQTV 371

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKD 121
              L   L D +  K+    ++D  V +   G+    +   T + S +  +  N H L  
Sbjct: 372 LTALRPWLEDPQAAKLAQNAKYDWRVFWRH-GIHPAGLARDTLLESYVLNSSHNGHDLDT 430

Query: 122 NLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
             +  L          + K + + +++   +++  L YAA D      +      +    
Sbjct: 431 LAERYLQHQNIRYEEVVGKGKSARNFADVPVAEA-LPYAAEDADVCLRVDALLWPRFASE 489

Query: 175 G--RSDLATSCCNFLMDRAELDLLGWE 199
              R  L       ++  A ++  G +
Sbjct: 490 PGLRRVLMEIEMPLVLVLARMEEAGVK 516


>gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619]
 gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619]
          Length = 915

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 18/176 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            R     A DTET  L  ++ +L  +  +        + +A   + AP           L
Sbjct: 330 LRQAPLFAFDTETTSLDAQKAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLAL 389

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
             +L D  +EK+    ++DI +L      ++++ V + T + S +  +   +H +    +
Sbjct: 390 KPLLQDPAKEKVGQNAKYDINILANGSPAIQMQGVAYDTMLESYVLNSTATRHDMDSLAQ 449

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
           + L       +  +   A  L+  Q+       YAA D      L      +L + 
Sbjct: 450 KYLDHATIAFEDIAGKGAKQLTFNQIHLDKAGPYAAEDADITLRLHQALQARLAQT 505


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 65/198 (32%), Gaps = 35/198 (17%)

Query: 14  ECAARYVD--AIAVDTETLGLMPRRD------------RLCIVQLS--PGDGTV-----D 52
           E  AR  D   +AVDTET GL P +               C V LS   GD  +      
Sbjct: 383 EWVARAFDLGFVAVDTETTGLDPMQADIVGFSLATAPNEACYVPLSHKGGDEGLFSEGLL 442

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
             +I      A  +  ++      KI    ++D  +L    G+ + P   T + S +   
Sbjct: 443 PDQIPIPDAVA-AIKPLMEHPGVLKIGQNLKYDWLILKR-LGIELGPYDDTMLVSYVLDA 500

Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
             + HG+       LG             K Q   D       D+   YAA D      L
Sbjct: 501 GASPHGMDPLSMRWLGHTPIKFEEVCGKGKGQICFD---RAAIDKATDYAAEDADVTLRL 557

Query: 164 RLQFTEKLQRLGRSDLAT 181
                 +L   G++ +  
Sbjct: 558 WRVLKPRLAAEGKTTVYE 575


>gi|304410319|ref|ZP_07391938.1| 3'-5' exonuclease [Shewanella baltica OS183]
 gi|307301970|ref|ZP_07581728.1| 3'-5' exonuclease [Shewanella baltica BA175]
 gi|304351728|gb|EFM16127.1| 3'-5' exonuclease [Shewanella baltica OS183]
 gi|306914008|gb|EFN44429.1| 3'-5' exonuclease [Shewanella baltica BA175]
          Length = 316

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            +    +  DTET       +R     L ++Q++  D    + + A   +    L  +L 
Sbjct: 128 LQAEQVLGFDTET---RASFERGVQHPLSLIQIATAD-ACYLFQHAILGEQFTQLKTVLE 183

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           DE   K+    R D   L   +G+ V        A           G +  +  LLG  I
Sbjct: 184 DENILKVGVGLRSDAQALKRQWGINVASKLDLNWALAQLGAEKE-MGTRQLVATLLGTRI 242

Query: 132 SK--AQQSSDWSADDLSDEQLQY 152
            K      S+W    LS  Q+ Y
Sbjct: 243 DKPKKITLSNWQHVPLSGAQINY 265


>gi|159465862|ref|XP_001691139.1| hypothetical protein CHLREDRAFT_180814 [Chlamydomonas reinhardtii]
 gi|158270331|gb|EDO96190.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 284

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 15/173 (8%)

Query: 7   HEGDIPAECAARYVD-AIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKN 62
           H  D      A   D  IA+D E         R   + +VQL+     V +   A G   
Sbjct: 75  HVEDALLRLRASMTDRVIAIDLE-WRPETVAGRSSPVALVQLASATTCVLLRVSAMGYIL 133

Query: 63  APNLVGMLVDEKREKIFHYG--RFDIAVLFYTFGV---RVRPVFCTKIASRLTRTYTNQH 117
              +   L D     I  +G    D A +  TFG+   R R     +  +R    +   +
Sbjct: 134 PAPVTAFLSDPSLV-ILGFGWDGADEAKMKSTFGIGKARFRRFIDLQEVARTLGYHG--Y 190

Query: 118 GLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           GL    +++LG+ +  SK+   S+W+A  L+  QL+YA+ DV+    L     
Sbjct: 191 GLARLTRQVLGVPLHKSKSVSRSNWAAPQLTAHQLKYASLDVLAAGQLFRALR 243


>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
 gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
          Length = 934

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 64/199 (32%), Gaps = 22/199 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
               A DTET  L  +  RL  +  +   G    + I     +AP           +  +
Sbjct: 353 ASLFAFDTETDSLDTQEARLVGMSFAIEAGHAAYLPIGHDYLDAPVQLSLDDVIAVMKPI 412

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNLKEL 126
           L +EK  KI    ++D  VL    G+ ++ + F T + S +        +H +       
Sbjct: 413 LENEKIGKIGQNLKYDAEVLENY-GIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRH 471

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           L       ++ +      L+  Q+       YAA D      L      +L+   +    
Sbjct: 472 LNHKTVSFEEIAGKGKKQLTFNQIPLEQAANYAAEDADVTLLLHQALFPQLEEEPKLAHV 531

Query: 181 TS--CCNFLMDRAELDLLG 197
                   +     ++  G
Sbjct: 532 FQNIEMPLVPVLVRMERKG 550


>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
 gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
          Length = 902

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 18/199 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
                  A DTET      + +L  V  +        + +      AP           L
Sbjct: 320 LADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHEAAYVPLWHDYTGAPAQLDKEEVLREL 379

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D  +  I    ++D  VL           + T +AS +  + + +H L     + 
Sbjct: 380 KPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKY 439

Query: 127 LGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           LG  + K +  +      +S      D+   YAA D      L  +    +++       
Sbjct: 440 LGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKV 499

Query: 181 --TSCCNFLMDRAELDLLG 197
                   +    ++++ G
Sbjct: 500 FEQIEMPLVPILMQMEMRG 518


>gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1]
          Length = 897

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +    D+ AE      D+ A DTET  L      L  +     +G    I +      
Sbjct: 304 TTQTQLDDLIAEL--EKSDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P           L  +  D K+ K+ H  +FD  VL          V  T I + + ++
Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421

Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157
              +H +    KE LGI            K QQ+ D         Q+       YAA D 
Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471

Query: 158 VHLHALRLQFTEKLQR 173
                L   F   L++
Sbjct: 472 DITFRLFNHFKALLEQ 487


>gi|288925838|ref|ZP_06419769.1| 3'-5' exonuclease domain protein [Prevotella buccae D17]
 gi|288337493|gb|EFC75848.1| 3'-5' exonuclease domain protein [Prevotella buccae D17]
          Length = 212

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 15/168 (8%)

Query: 20  VDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            D +  DTET  +    +  ++ ++Q++  D  +       G     +++ +L D   +K
Sbjct: 45  SDILGFDTETKPVFRRGQHSKVALLQVANRDACILFRLNYTGMT--SDIIRLLEDRTVKK 102

Query: 78  I---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK 133
           I   +H    DI  L      +V      + I   L         L+     L    ISK
Sbjct: 103 IGLSWHD---DILSLQRRKPFQVGSFIDLQDIVGDL---GIEDRSLQKLYANLFQEKISK 156

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            Q+ ++W AD L D Q QYAA+D      L  +  E+L+R G  +L  
Sbjct: 157 NQRLTNWEADVLKDSQKQYAATDAWTCIKLYEEI-ERLKRTGDYELIK 203


>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
 gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
 gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
          Length = 897

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +    D+ AE      D+ A DTET  L      L  +     +G    I +      
Sbjct: 304 TTQTQLDDLIAEL--EKSDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P           L  +  D K+ K+ H  +FD  VL          V  T I + + ++
Sbjct: 362 VPQQLELGFVLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421

Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157
              +H +    KE LGI            K QQ+ D         Q+       YAA D 
Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471

Query: 158 VHLHALRLQFTEKLQR 173
                L   F   L++
Sbjct: 472 DITFRLFNHFKALLEQ 487


>gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234]
 gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234]
          Length = 1040

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 60/209 (28%), Gaps = 64/209 (30%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA---------- 57
           AR       DTET  L P R  LC V L+  D + D          + +           
Sbjct: 438 AREAGLFGFDTETTSLDPMRADLCGVSLAIADYSNDPMGGTIRAAYVPLIHKNGVGDLLG 497

Query: 58  --------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
                     ++    L  +L D    K+    ++D  V+    G+ ++    T + S +
Sbjct: 498 GGLVENQVPMREALSRLKNLLEDPSVLKVAQNLKYDYLVMKRH-GIAMQSFDDTMLMSYV 556

Query: 110 TRTYTNQHGLKDNLKELLG---------------------INISKAQQSSDWSADDLSDE 148
                  HG+    +  LG                     ++I KA              
Sbjct: 557 VDAGNGMHGMDSLSERWLGHTPIPYKDIAGTGKASVSFDFVDIDKATT------------ 604

Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLGRS 177
              YAA D      L      +L   G +
Sbjct: 605 ---YAAEDADVTLRLWHVLKPRLAAKGLT 630


>gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
 gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
          Length = 927

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 26/215 (12%)

Query: 16  AARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPN------- 65
           A R+    A DTET GL         LC    +   G    + +     +AP+       
Sbjct: 344 AIRHAGVFAFDTETDGLDTLTANLIGLC---FAVKPGEAAYLPVGHDYLDAPDQLDRATV 400

Query: 66  ---LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  ++ D    KI    +FD  VL           F T + S +  +   +H +   
Sbjct: 401 LAALKPVMEDPTIGKIGQNLKFDRGVLKRYDIELAGIAFDTMLESYVLDSVAGRHDMDSL 460

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR--L 174
            +  L       ++ +    + L+  Q+       YAA D      L  +   ++++   
Sbjct: 461 AERFLQHTTVSFEEIAGKGRNQLTFNQIAMEQAASYAAEDADVTLRLHQKLWPRIEQAPE 520

Query: 175 GRSDLATSCCNFLMDRAELDLLGW--ENVDIFSHS 207
            R          +   + ++  G   +   + +HS
Sbjct: 521 LRRVFEEIEMPLVPVLSRIERTGVLIDESILAAHS 555


>gi|292617367|ref|XP_697980.4| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Danio
           rerio]
          Length = 1361

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 10/163 (6%)

Query: 16  AARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           A     A+  D E          +  ++ +VQL   +    +  I++     P L   L 
Sbjct: 60  ALSSGSAVGFDLEWPPSFTKGKTK--KVAMVQLCASEDKCYLFHISSMSGFPPGLKMFLE 117

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGIN 130
           DE   K+      D   L   + ++++ +   + +A+   R    +  L   +K LL   
Sbjct: 118 DENIMKVGVGIEGDKWKLLSDYDIKLKNIVDLSDLANEKLRC-CEKWSLDGLVKHLLKKQ 176

Query: 131 I--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +   K  + S W    L+++Q +YAA+D      +  +  E +
Sbjct: 177 LFKDKLVRCSHWDDFSLTEDQKRYAATDAYAGLLIYQKLQEMI 219


>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
 gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
          Length = 902

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 18/199 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET      + +L  V  +        + +      AP           L
Sbjct: 320 LADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKEEVLRKL 379

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D  +  I    ++D  VL           + T +AS +  + + +H L     + 
Sbjct: 380 KPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKY 439

Query: 127 LGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           LG  + K +  +      +S      D+   YAA D      L  +    +++       
Sbjct: 440 LGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKV 499

Query: 181 --TSCCNFLMDRAELDLLG 197
                   +    ++++ G
Sbjct: 500 FEQIEMPLVPILMQMEMRG 518


>gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217]
 gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217]
          Length = 936

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 30/192 (15%)

Query: 11  IPAECAA-RYVDAIAVDTETLGLMPRRD------------RLCIVQLSPGDGTVD----I 53
           + A  AA R    +AVDTET  L   +             R C + L+  DG  D     
Sbjct: 338 LDAWIAAIRSQGYVAVDTETTSLNEMQADLVGISLAIAPGRACYIPLTHKDGAADDLFGS 397

Query: 54  IRIAAGQ----KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
            ++A GQ         L  +L D    KI    ++D  +     G+ V P+  T + S  
Sbjct: 398 DKMAEGQMPVADALAALKPVLEDHAILKIGQNMKYDAKIFAAR-GITVEPIDDTMLMSYA 456

Query: 110 TRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                + HG+    +  L          +   + +  +    + +  ++YAA D      
Sbjct: 457 LHAGLHGHGMDALSERYLMHTPIPIKSLLGSGKTAVTFDRVPVDEA-VKYAAEDADITLR 515

Query: 163 LRLQFTEKLQRL 174
           L L F  +L R 
Sbjct: 516 LWLTFKPQLHRA 527


>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 912

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 74/216 (34%), Gaps = 22/216 (10%)

Query: 5   RVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            V + D   +   R   A   A D ET  L      +  V L+ G G    + +A    +
Sbjct: 315 TVDDADAFDDWLRRLESAELFAFDLETSSLNYMDAEIVGVALAVGAGEAAYVPLAHEGPD 374

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
            P           L  +L D  R K+    ++D++VL     + +  V + T + S +  
Sbjct: 375 TPTQLDRDRVLAALKPLLEDPDRAKVGQNLKYDMSVLARY-DIHLEGVAYDTMLESYVLD 433

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +  ++H +     + LG    K +      A  +   Q+      +YA  D      L  
Sbjct: 434 STASRHDMDSLALKYLGRATVKYEDVCGKGAKQIPFAQVAVETATRYAGEDADITLRLHQ 493

Query: 166 QFTEKLQRLGRSDLA--TSCCNFLMDRAELDLLGWE 199
               +L+  GR            L   + ++  G +
Sbjct: 494 TLYPRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVK 529


>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
 gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
          Length = 922

 Score = 67.3 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 25/195 (12%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E  +    A  +    +AVDTET  L      L  +  +   G    + +A     AP
Sbjct: 327 LTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAP 386

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
                      L  +L D K +K+    ++DI+VL          VF T + S +  +  
Sbjct: 387 QQLDKQTALEKLRPLLEDAKIKKVGQNLKYDISVLANAGIKLQGVVFDTMLESYVFNSIA 446

Query: 115 NQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRL 165
           ++H +     + LG    K     D     A  L+  Q+       YAA D      L  
Sbjct: 447 SRHDMDGLALKYLGH---KNIAFEDIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 503

Query: 166 QFTEKLQRLGRSDLA 180
               +L++   ++LA
Sbjct: 504 HLWPRLEKE--TELA 516


>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
 gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
          Length = 930

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 65/199 (32%), Gaps = 22/199 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
               A DTET  L  +  RL  +  +   G    + +     +AP           +  +
Sbjct: 349 ASIFAFDTETDSLDTQEARLVGMSFAIEPGYAAYLPLGHDYLDAPVQLPLNDVLAAMKPI 408

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNLKEL 126
           L ++K  KI    ++D  VL     + ++ + F T + S +        +H +    +  
Sbjct: 409 LENDKILKIGQNLKYDAEVLLNY-DIELKGIAFDTMLESYVLNSVAGMGRHDMDSLAERH 467

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           L       ++ +      L+  Q+       YAA D      L      +L+   + +  
Sbjct: 468 LNHKTVSFEEIAGKGKKQLTFNQIALEQAANYAAEDADVTLLLHQALYPQLEAEPKLNHV 527

Query: 181 --TSCCNFLMDRAELDLLG 197
                   +     ++  G
Sbjct: 528 FREIEMPLVPVLVRMERKG 546


>gi|310792344|gb|EFQ27871.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
          Length = 549

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 14/145 (9%)

Query: 39  LCIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
           + ++Q++         I         AP    ++ +   +K+    + D   +    GV 
Sbjct: 203 VSLIQVANESRIALFHIALFPNNDFEAPTFRKIMENADVKKVGVAIKGDCTRMRTHLGVD 262

Query: 97  VRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKAQ--QSSDWSADDL 145
            + +F      +L +   N            L   ++E LG+ + K    +SSDWS   L
Sbjct: 263 TKGIFELSHLYKLVKYSANGRVGLINKRLVSLASLVQENLGLPMFKGSDVRSSDWSQ-PL 321

Query: 146 SDEQLQYAASDVVHLHALRLQFTEK 170
           +  Q+ Y+ASD      L      K
Sbjct: 322 NMSQIMYSASDAYAGFQLYHVLEGK 346


>gi|15223514|ref|NP_176027.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
 gi|12321757|gb|AAG50917.1|AC069159_18 3'-5' exonuclease, putative [Arabidopsis thaliana]
          Length = 582

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 51/190 (26%)

Query: 13  AECAARYVDAIAVDTETLGLMPRR------DRLCIVQLSPGDGTVDIIRIAAGQKNAPN- 65
           A         + +D E     P        +++ I+Q+   D  + I+ +     +A   
Sbjct: 371 ATSFLEGCRVVGIDCE---WKPNYIKGSKQNKVSIMQIGS-DTKIFILDLIKLYNDASEI 426

Query: 66  ----LVGMLVDEKREKIF--------H---------------YGRF-DIAVL-FYTFGVR 96
               L  +L  +   K+         H                  + D+     Y   + 
Sbjct: 427 LDNCLSHILQSKSTLKLVSLTEDYPDHKLSSGYNFQCDIKQLALSYGDLKCFERYDMLLD 486

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           ++ VF                GL    K++LG++++K +++SDW    LS  QL+YAA D
Sbjct: 487 IQNVF-----------NEPFGGLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALD 535

Query: 157 VVHLHALRLQ 166
              L  +   
Sbjct: 536 AAVLIHIFRH 545


>gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
 gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
          Length = 917

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 32/182 (17%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               + IA DTET  +  ++ ++  V  +  +G    + +A      P+          L
Sbjct: 332 LEQAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPDQLERDAVLRAL 391

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120
             +L D ++ K+  + ++DI VL         P+      + T + S +  +   +H + 
Sbjct: 392 KPLLEDPQKLKVGQHAKYDINVLANA----STPIAMQGVAYDTMLESYVLDSTATRHDMD 447

Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171
               + LG +     +  D     A  L+ +Q+       YAA D      L     +KL
Sbjct: 448 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 504

Query: 172 QR 173
           + 
Sbjct: 505 EA 506


>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
 gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
          Length = 949

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 18/187 (9%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           I  HE         +   A A DTET  L     RL  +  +   G    I +     +A
Sbjct: 353 ILTHESLARWVELLKKAPAFAFDTETDSLNNIDARLIGMSFAIEPGKAAYIPLRHEYLDA 412

Query: 64  PN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRT 112
           P           L  +L D+   KI    +FD  ++    G+ +  + F T + S +  +
Sbjct: 413 PEQLPVNDVLAALKPILEDKNILKIGQNLKFDRGIMENE-GIELNGIHFDTMLESYVLNS 471

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQ 166
            +N+H +    ++ L    +  ++ +      L+  Q++      YAA D      L   
Sbjct: 472 VSNRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQA 531

Query: 167 FTEKLQR 173
              +++ 
Sbjct: 532 LYPQIEA 538


>gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76
           +  ++DTET G  P    L  +  S  +     + + A +  A             E   
Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRAEAQKIVNEFRPAFEKEGVL 458

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           K+    ++D+ VL         P+F T +A  + +    +H +    +  L    I+I  
Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q+    +  DLS E + +YA  D      L+    ++L+      L      
Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573

Query: 185 NFLMDRAELDLLG 197
             +   A ++  G
Sbjct: 574 PLVPVLAYMERNG 586


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76
           +  ++DTET G  P    L  +  S  +     + + A +  A             E   
Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRAEAQKIVNEFRPAFEKEGVL 458

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           K+    ++D+ VL         P+F T +A  + +    +H +    +  L    I+I  
Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q+    +  DLS E + +YA  D      L+    ++L+      L      
Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573

Query: 185 NFLMDRAELDLLG 197
             +   A ++  G
Sbjct: 574 PLVPVLAYMERNG 586


>gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45]
 gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45]
          Length = 935

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 29/197 (14%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------ 57
           ++  E   P     +    +AVDTET GL      L  + L    G    I +A      
Sbjct: 331 VKTAEELAPWIAETQQRGWVAVDTETTGLNEMACDLVGISLCITPGKACYIPLAHRAAAT 390

Query: 58  --------------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
                           Q     L  +L D    KI    ++D  +     G+ + P+  T
Sbjct: 391 DDLFGSDELAEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GIGITPIDDT 449

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASD 156
            + S       + HG+    +  L          +   +    +    + D  ++YAA D
Sbjct: 450 MLMSYAMHGGLHGHGMDTLSERYLSHTPIPIKSLLGSGKSQITFDRVPVEDA-VKYAAED 508

Query: 157 VVHLHALRLQFTEKLQR 173
                 L   F  +L +
Sbjct: 509 ADITLRLWTIFKPQLHQ 525


>gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 71/205 (34%), Gaps = 19/205 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     AVDTET  +  R  R+  V  +        I I      AP           L
Sbjct: 345 LKAAPRFAVDTETTSVDYRLARIVGVSFALQASEAFYIPIGHDYMGAPEQLDAKFVLDTL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L +    KI  + ++D  V            F T +AS +      +HG+ D  +  
Sbjct: 405 KPILENPAIGKIGQHMKYDAHVFNNHGISLAGWAFDTMLASYVLNPTATRHGMDDLAQYY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSD-- 178
           L    +  +Q +   A  L+  Q++      YAA D      L   F + L ++ + +  
Sbjct: 465 LDYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWRLYEYFAQALAKIPKLEKL 524

Query: 179 LATSCCNFLMDRAELDLLGWENVDI 203
           L            E++  G   +DI
Sbjct: 525 LLEIEMPAAQVLYEMENNGI-RLDI 548


>gi|7595900|gb|AAF64490.1|AF241636_1 WRN protein [Mus musculus]
          Length = 1401

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++  +K        I      L  
Sbjct: 88  RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+   +       L   +K +LG  +   K+ + S+WS   L+++
Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202

Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190
           Q  YAA+D      +  +                     L+   + +L +     L +R
Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261


>gi|29429137|sp|O09053|WRN_MOUSE RecName: Full=Werner syndrome ATP-dependent helicase homolog;
           AltName: Full=Exonuclease WRN
          Length = 1401

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++  +K        I      L  
Sbjct: 88  RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+   +       L   +K +LG  +   K+ + S+WS   L+++
Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202

Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190
           Q  YAA+D      +  +                     L+   + +L +     L +R
Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261


>gi|2130973|dbj|BAA20269.1| WRN typeI [Mus musculus]
 gi|2130975|dbj|BAA20270.1| WRN typeII [Mus musculus]
          Length = 1401

 Score = 66.9 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++  +K        I      L  
Sbjct: 88  RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+   +       L   +K +LG  +   K+ + S+WS   L+++
Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202

Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190
           Q  YAA+D      +  +                     L+   + +L +     L +R
Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261


>gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
 gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
          Length = 931

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 69/196 (35%), Gaps = 14/196 (7%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+   E D+         +   A DTET  L      L  +  S   G    +  A    
Sbjct: 339 TLIQDEDDLNQLAEKLGSLKEFAFDTETTSLTTLDAELVGISFSFAPGEAFFVYCAESAL 398

Query: 62  NAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116
           +       L  +L + +  KI    ++D+ VL    GVRV+PV F T +AS +       
Sbjct: 399 SRETAIRVLKPILENPEIGKIGQNLKYDMLVLKNY-GVRVQPVRFDTMLASYVLNP-DKT 456

Query: 117 HGLKDNLKELLGINISK-----AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170
           H L D   + LG+   K      +  S+ S  ++  + L  YA  D      L+    + 
Sbjct: 457 HNLDDLAADHLGLETVKYADLVGKGKSEKSIYEVEPKTLSDYACQDADVALQLKNVLEKA 516

Query: 171 LQRLGRSDLATSCCNF 186
           L              F
Sbjct: 517 LGENEPLKKICEELEF 532


>gi|254883500|ref|ZP_05256210.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254836293|gb|EET16602.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 216

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + VDTE             ++ ++Q+S  D           +   P+ + 
Sbjct: 37  AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +     KI    + D   L     V          ++   + R       L+     L
Sbjct: 92  EFLMSDTLKIGLSLKDDFNSLRRREDVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            G  ISK+Q+ S+W AD LS+ Q  YAA+D      +    TE L+R G
Sbjct: 150 FGQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCLTE-LERTG 197


>gi|170590466|ref|XP_001899993.1| 3'-5' exonuclease family protein [Brugia malayi]
 gi|158592625|gb|EDP31223.1| 3'-5' exonuclease family protein [Brugia malayi]
          Length = 331

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L D  +++LG  + K +Q  +W+   L  EQ++YAA D   L  L  +   + +R    D
Sbjct: 196 LTDLCRKVLGQALDKTEQIGNWAMRPLRREQMKYAAMDGYCLLNLYNKLKIRAERDYNMD 255

Query: 179 LAT--SCCNFLMDRAE 192
                  C+    +++
Sbjct: 256 WTKHWKECDIAQIKSK 271


>gi|148703462|gb|EDL35409.1| Werner syndrome homolog (human) [Mus musculus]
          Length = 1385

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++  +K        I      L  
Sbjct: 88  RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+   +       L   +K +LG  +   K+ + S+WS   L+++
Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202

Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190
           Q  YAA+D      +  +                     L+   + +L +     L +R
Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261


>gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83]
          Length = 928

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227]
 gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227]
          Length = 928

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|303235739|ref|ZP_07322346.1| 3'-5' exonuclease [Prevotella disiens FB035-09AN]
 gi|302484186|gb|EFL47174.1| 3'-5' exonuclease [Prevotella disiens FB035-09AN]
          Length = 230

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 19/167 (11%)

Query: 20  VDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            D + +D+E             ++ ++Q+S  D          G  +   ++ +L D   
Sbjct: 52  ADILGIDSETRPVFCKGKHH--KVALLQVSTHDVCFLFRLNLIGMPSC--IIRLLEDTTV 107

Query: 76  EKI---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINI 131
            K+    H    D  +L              +    + + +      L+     L    I
Sbjct: 108 TKVGLSLHD---DFMMLHKRTDFTTGKFIDLQ---NIVQEFGIEDLSLQKLYANLFHERI 161

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +K +Q S+W A  LSD+Q  YAA+D      +  +    L+     +
Sbjct: 162 TKREQLSNWEAPILSDKQKLYAATDAWACIQIYERLRA-LRSTNNYE 207


>gi|294940026|ref|XP_002782641.1| hypothetical protein Pmar_PMAR021190 [Perkinsus marinus ATCC 50983]
 gi|239894493|gb|EER14436.1| hypothetical protein Pmar_PMAR021190 [Perkinsus marinus ATCC 50983]
          Length = 1103

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 22/144 (15%)

Query: 23   IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
            I +D E            + Q++  D    I  +    + +  L   L   +  ++  + 
Sbjct: 960  IGIDVEWSSG----PGAALFQVASEDTVYLIDMLVPEIRQSSTLFSTLR--RVRRVLGFS 1013

Query: 83   -RFDIAVL--FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
               D+  +      G     V   ++          +  L+ ++   LG  + K +Q S+
Sbjct: 1014 ISADLERIPQLKECG-----VIDVQV--------DKRGSLQRHVAGQLGAYLDKTEQCSE 1060

Query: 140  WSADDLSDEQLQYAASDVVHLHAL 163
            W+   LS+ Q  YAA D   L AL
Sbjct: 1061 WADRPLSESQKNYAALDAYTLLAL 1084


>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
 gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
          Length = 921

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 18/172 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   L    ++        + +A   + AP           + 
Sbjct: 344 QQADHFAIDTETTNLDYRVAELVGFSIAFDANEAYYVPLAHDYEGAPEQLSREQVLAQIK 403

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E+ +KI H+ ++D  +     G+ ++   F T +AS +      +HG+ D  +  
Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH-GIIIQGWYFDTMLASYVLNAAATRHGMDDVARVY 462

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+
Sbjct: 463 LSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYAAEDAHVTYRLYEVLSSKLK 514


>gi|330955743|gb|EGH56003.1| ribonuclease D [Pseudomonas syringae Cit 7]
          Length = 178

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +E+L I++ K +  SDW    LS+ Q+ YAA D VHL  L      +L
Sbjct: 1   QEVLDIDLPKGETRSDWLERPLSETQISYAAEDAVHLAELFTILRPRL 48


>gi|170049331|ref|XP_001855491.1| 3'-5' exonuclease [Culex quinquefasciatus]
 gi|167871144|gb|EDS34527.1| 3'-5' exonuclease [Culex quinquefasciatus]
          Length = 489

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 19/164 (11%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDG---TVDIIRIAAGQKNAPNLVGMLVDEKREK 77
             +  D E L   PR     ++QL+ G G      ++R+    +    L+ +L D K  K
Sbjct: 256 PFLGFDCEWLPWNPRGPIT-LLQLAGGKGSQRLCVLVRLCYDFEIPQELLDLLNDPKIIK 314

Query: 78  IFHYGRF---DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---HGLKDNLKELLGINI 131
               G     D   L   +G  V+         R     T+Q    GL    ++ L + +
Sbjct: 315 ---AGVESIRDAQFLDQDYGFTVQGAID----LRFLYPQTHQQQPIGLAALAEKELHVYL 367

Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              KA   S ++   LS EQ+QYAA D +    L  +F +K  +
Sbjct: 368 NKDKAITLSGFNQPILSYEQIQYAAGDAIVGANLFDKFWQKCNK 411


>gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
 gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
          Length = 936

 Score = 66.9 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 28/180 (15%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNAPN------------ 65
              +AVDTET  L   R  L  + L    G    I +A  AG  +               
Sbjct: 344 AGHVAVDTETTSLDEMRADLVGISLCVAAGQACYIPLAHKAGADDLFGSDARAEGQMDMA 403

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +L D    KI    ++D  +     G+ V P+  T + S       + HG+ 
Sbjct: 404 ACLAMLKPVLEDASILKIGQNMKYDAKIF-ALLGIAVAPIDDTMLMSYAMHAGLHNHGMD 462

Query: 121 DNLKELLGI-------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              +  LG         +   + +  +    + D  ++YAA D      L   F  +L +
Sbjct: 463 TLSERYLGHIPIPIKPLLGSGKSAITFDRVPVDDA-VKYAAEDADVTLRLWQMFKPQLHQ 521


>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112]
 gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
 gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
 gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
          Length = 897

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +    D+ AE      D+ A DTET  L      L  +     +G    I +      
Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P           L  +  D K+ K+ H  +FD  VL          V  T I + + ++
Sbjct: 362 VPQQLELGFVLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421

Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157
              +H +    KE LGI            K QQ+ D         Q+       YAA D 
Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471

Query: 158 VHLHALRLQFTEKLQR 173
                L   F   L++
Sbjct: 472 DITFRLFNHFKALLEQ 487


>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 897

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +    D+ AE      D+ A DTET  L      L  +     +G    I +      
Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P           L  +  D K+ K+ H  +FD  VL          V  T I + + ++
Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421

Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157
              +H +    KE LGI            K QQ+ D         Q+       YAA D 
Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471

Query: 158 VHLHALRLQFTEKLQR 173
                L   F   L++
Sbjct: 472 DITFRLFNHFKALLEQ 487


>gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
 gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
          Length = 930

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 19/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
                 IAVDTET  L      L  +  +  +G    + +      AP           L
Sbjct: 350 LAQAKLIAVDTETDNLDYMSANLVGISFALENGEAAYLPLRHNYIGAPQQIDFDTALSRL 409

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L +   EK+    ++D+++     G+ V+ V + T + S +  + T +H + D  K 
Sbjct: 410 KPILENPVIEKVGQNIKYDLSIFARN-GINVQGVTYDTMLLSYVLDS-TGRHNMDDLAKR 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            LG      ++ +      L+ +Q+       YAA D      L+    EK+   
Sbjct: 468 YLGHQTISFEEIAGKGKGQLTFDQIPLEHATTYAAEDADITMKLQQVLWEKVSEQ 522


>gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
 gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
          Length = 937

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 59/185 (31%), Gaps = 29/185 (15%)

Query: 18  RYVDAIAVDTETLGLM------------PRRDRLCIVQL----SPGDGTVDIIRIAAGQ- 60
           R    +AVDTET G                  R C + L       D       +A GQ 
Sbjct: 347 RERGWVAVDTETTGFDEMVVDLVGISLCVEPGRACYIPLTHKSGSSDDLFGSDDLADGQM 406

Query: 61  ---KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  +     G+ V P+  T + S       + H
Sbjct: 407 PLQDALDLLKPVLEDNSILKIGQNMKYDAKIFARR-GIDVAPIDDTMLMSYAMHAGQHGH 465

Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           G+    +  L          +   + +  +    + D  + YAA D      L   F  +
Sbjct: 466 GMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDA-VAYAAEDADITLRLWQLFKPQ 524

Query: 171 LQRLG 175
           L + G
Sbjct: 525 LHQSG 529


>gi|74227079|dbj|BAE38334.1| unnamed protein product [Mus musculus]
          Length = 789

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++  +K        I      L  
Sbjct: 88  RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+   +       L   +K +LG  +   K+ + S+WS   L+++
Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202

Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190
           Q  YAA+D      +  +                     L+   + +L +     L +R
Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261


>gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
          Length = 997

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 70/219 (31%), Gaps = 39/219 (17%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA-------- 57
             AR    +A DTET  L   +  L    ++  D   D          + +A        
Sbjct: 391 ADARDTGLVAFDTETTSLDAMQAELVGFSMAIADNVADPTGTKIRAAYLPLAHKNGVGDL 450

Query: 58  ----------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                       +   P L  +L DE   K+    ++D  +L   +G+  +    T + S
Sbjct: 451 LGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETKSFDDTMLIS 509

Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159
            +    T  HG+    ++ LG      K    S     +++      D    YAA D   
Sbjct: 510 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GRANVTFDLVDIDRATHYAAEDADV 567

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L L    +L   G + +        L   A ++  G
Sbjct: 568 TLRLWLVLKPRLVAAGLTSVYERLERPLLPVLARMEARG 606


>gi|147797616|emb|CAN65003.1| hypothetical protein VITISV_023489 [Vitis vinifera]
          Length = 393

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 4   IRVHEGDIPAECAA----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           I  H   +P +       R +  I  D E + L      LCI+QL+  D    +  I  G
Sbjct: 35  IVTHASQLPKDFLVPSPVRQL-VIGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGG 92

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104
           +K        L      K+ H  + D   L++ FG+++  V  ++
Sbjct: 93  EKLMKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDSQ 137



 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 10/80 (12%)

Query: 111 RTYTNQHGLKDNLK--ELLGIN-ISKAQQSS----D---WSADDLSDEQLQYAASDVVHL 160
           R+  +       L      GI+ + K +       D   W+   LS+  ++ AA DV  L
Sbjct: 208 RSPDDYISFVGLLADPRYCGISYLEKKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFL 267

Query: 161 HALRLQFTEKLQRLGRSDLA 180
             +  +  E+L       LA
Sbjct: 268 PYIYYKMMEELNEHSLWKLA 287


>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
 gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
          Length = 897

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +    D+ AE      D+ A DTET  L      L  +     +G    I +      
Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P           L  +  D K+ K+ H  +FD  VL          V  T I + + ++
Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421

Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157
              +H +    KE LGI            K QQ+ D         Q+       YAA D 
Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTVIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471

Query: 158 VHLHALRLQFTEKLQR 173
                L   F   L++
Sbjct: 472 DITFRLFNHFKALLEQ 487


>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 897

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +    D+ AE      D+ A DTET  L      L  +     +G    I +      
Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P           L  +  D K+ K+ H  +FD  VL          V  T I + + ++
Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421

Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157
              +H +    KE LGI            K QQ+ D         Q+       YAA D 
Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471

Query: 158 VHLHALRLQFTEKLQR 173
                L   F   L++
Sbjct: 472 DITFRLFNHFKALLEQ 487


>gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
 gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
          Length = 946

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 56/169 (33%), Gaps = 19/169 (11%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGM-------LVDEKREKIFHYGRFDIAVLFYTFGVR 96
           LS   G    + + AG K   N   M       L +     I    ++D  V+       
Sbjct: 399 LSWKAGEAWYVPLVAGGKTVSNEKAMKAVVKKHLENPALGVIGQNLKYDYKVMARWGVRI 458

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG-------INISKAQQSSDWSADDLSDEQ 149
             PVF T +A+ L  + +  + +     + LG         + K    SD     L    
Sbjct: 459 ANPVFDTMVAAWLLDSASGIYNMDKLADKYLGYVTITYDQVVPKGALFSD---VPLDKA- 514

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
           +QYAA D      L   F   L     + L        L   A+++L G
Sbjct: 515 VQYAAEDADVTWRLYETFAPMLAERKMTSLMDDLEMPLLRVLADMELEG 563


>gi|156101427|ref|XP_001616407.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148805281|gb|EDL46680.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
          Length = 752

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            L    ++ LG N++K  Q S+WS   L + Q+ YAA+D   L  L     E
Sbjct: 671 SLSHLCQKFLGKNLNKQLQLSNWSRRPLMESQIHYAATDAYVLIVLERLLIE 722



 Score = 35.7 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 8/76 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREK 77
            I +D E         +  I+ ++  +    I  +                +L +    K
Sbjct: 504 YIGIDVEWNR----YQKASIISVATEERIYLIDLLTVDYNYKILIHSFFKWLLENPFVCK 559

Query: 78  IFHYGRFDIAVLFYTF 93
           +F+    D+ VL   F
Sbjct: 560 LFYNFACDMRVLNSFF 575


>gi|74196546|dbj|BAE34397.1| unnamed protein product [Mus musculus]
          Length = 265

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 28/178 (15%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++  +K        I      L  
Sbjct: 88  RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+   +       L   +K +LG  +   K+ + S+WS   L+++
Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202

Query: 149 QLQYAASDVVHLHALRLQFTEK----------------LQRLGRSDLATSCCNFLMDR 190
           Q  YAA+D      +  +                    L+   + +L +     L +R
Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKEENLPLEMKKQLNLISEEMRDLANR 260


>gi|294775292|ref|ZP_06740815.1| 3'-5' exonuclease [Bacteroides vulgatus PC510]
 gi|294450869|gb|EFG19346.1| 3'-5' exonuclease [Bacteroides vulgatus PC510]
          Length = 216

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + VDTE             ++ ++Q+S  D           +   P+ + 
Sbjct: 37  AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +     KI    + D   L     V          ++   + R       L+     L
Sbjct: 92  EFLMSDTLKIGLSLKDDFNSLRKREDVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            G  ISK+Q+ S+W A+ LS+ Q  YAA+D      +    TE L+R G
Sbjct: 150 FGQKISKSQRLSNWEAEVLSEGQKLYAATDAWACVEIYNCLTE-LERTG 197


>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 870

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|282879856|ref|ZP_06288583.1| 3'-5' exonuclease [Prevotella timonensis CRIS 5C-B1]
 gi|281306250|gb|EFA98283.1| 3'-5' exonuclease [Prevotella timonensis CRIS 5C-B1]
          Length = 215

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 19  YVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK 74
               + VDTE             ++ ++Q++  D          G    P++  +L + +
Sbjct: 43  KQSILGVDTETRPVFRKGQSY--KVSLLQVATHDTCFLFRLNILGIT--PSIKRLLENTE 98

Query: 75  REKI---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGIN 130
            + I   +H    D+  L      +       + I   L         L+     +    
Sbjct: 99  TKMIGLSWHD---DLLALHKRSDFKKGNFIDLQDIVGDL---GIKDLSLQKLYANIFRQK 152

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           ISK Q+ ++W+ + LS++Q QYAA+D      L  +   +L+  G   L    
Sbjct: 153 ISKRQRLTNWNNETLSEKQKQYAATDAWACIQLYEEIM-RLKVSGDYQLVEVE 204


>gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36]
 gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36]
          Length = 932

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 67/200 (33%), Gaps = 33/200 (16%)

Query: 7   HEGDIPAECA----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAG 59
           H  D  A  A          +AVDTET GL     +L  V L    G    I +   A G
Sbjct: 327 HVSDTAALQAWIDRIYEFGYVAVDTETTGLDDMVAQLVGVSLCVEPGKACYIPLIHKARG 386

Query: 60  QKNA-----------------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102
             +                    L  ML D    KI    ++D  +     G+ V P+  
Sbjct: 387 SDDLFGSDDLAEGQIPTEEALRLLTPMLEDHSILKIGQNMKYDSKIFAQ-LGINVAPIDD 445

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAAS 155
           T + S       + HG+    +  L          +   + +  +    L+D  ++YAA 
Sbjct: 446 TMLLSYAMHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADA-VKYAAE 504

Query: 156 DVVHLHALRLQFTEKLQRLG 175
           D      L   F  +L R+G
Sbjct: 505 DADITLRLWQLFKPQLHRVG 524


>gi|3851581|gb|AAC72359.1| Wrn protein [Mus musculus]
          Length = 988

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 29/179 (16%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++  +K        I      L  
Sbjct: 88  RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+   +       L   +K +LG  +   K+ + S+WS   L+++
Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202

Query: 149 QLQYAASDVVHLHALRLQFTEK-----------------LQRLGRSDLATSCCNFLMDR 190
           Q  YAA+D      +  +                     L+   + +L +     L +R
Sbjct: 203 QKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAEENLPLEMKKQLNLISEEMRDLANR 261


>gi|288800138|ref|ZP_06405597.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288333386|gb|EFC71865.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 210

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 17/175 (9%)

Query: 4   IRVHEGDIPAECAARYV---DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           I V +G+  AE A  Y+   + + VDTE        +    ++ ++Q++  D        
Sbjct: 26  IIVIQGEQEAERAVEYLMQQEILGVDTETRPSFSKGITH--KVSLLQVASHD---VCFLF 80

Query: 57  AAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT- 114
                  PN L+ +L +     I      D+  L      +       +   ++      
Sbjct: 81  RLNMIGLPNCLIRLLENNYIPMIGLSWNDDLLALRKRKEFKPGHFIDLQ---KIVGAIGI 137

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
               L+     + G  ISK Q+ S+W  + L+D+Q  YAA D      L  +   
Sbjct: 138 EDLSLQKLYANVFGEKISKRQRLSNWDHEVLNDKQKTYAAIDAWACIQLYEEIAR 192


>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
 gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
          Length = 941

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET    P    L  +  S  +     + +   ++ A         +  +E  
Sbjct: 368 TKILSIDTETTSAEPMEAELVGMSFSDTENQAYYVPVPPEREEALKIVNEFRPLYENENS 427

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++DI VL    GV V+  +F T +A  + +    +H +    +  L    I+I
Sbjct: 428 MKVGQNIKYDILVLQNY-GVEVKGELFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 485

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DL  E++ +YA  D      L+    E+L++ G   L    
Sbjct: 486 DELIGPKGKNQK----NMRDLPPEEVYKYACEDADITLKLKNVLEEELKKQGVEHLFYEI 541

Query: 183 CCNFLMDRAELDLLG 197
               +   A ++  G
Sbjct: 542 EMPLVRVLANMESNG 556


>gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
 gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
          Length = 924

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 60/173 (34%), Gaps = 38/173 (21%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---------- 66
           AR    +A+DTET  L  RR  L  V L+   G    I  A G + A  L          
Sbjct: 322 ARAAGLVAIDTETDSLKARRATLVGVSLAITPGRACYIPFAHGLRKAEGLDFDGAAPPVA 381

Query: 67  ------------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
                         +L D    K+ H  +FD+ VL       V PV  T + S +     
Sbjct: 382 NIEDKAAALALLGDLLRDPGVLKVGHNLKFDLHVLANAGLSDVAPVDDTMVLSYVLDGTL 441

Query: 115 NQHGLKDNL-----------KELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
           + HG+ +             +E+ G    K +    +    L    + YAA D
Sbjct: 442 HGHGMDELAGLHLGRRTITFEEVCG----KGKGQITFDQVPLDKA-VAYAAED 489


>gi|117919429|ref|YP_868621.1| 3'-5' exonuclease [Shewanella sp. ANA-3]
 gi|117611761|gb|ABK47215.1| 3'-5' exonuclease [Shewanella sp. ANA-3]
          Length = 303

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 13  AECAARYVDAIAVDTET-LGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           A         +  DTET     P  +  L +VQL+  D T  + + A   +    L  +L
Sbjct: 113 ALQQLSRESVLGFDTETRASFEPGVQHPLSLVQLATSD-TCYLFQQAVLGERLAELKPLL 171

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            +E+  K+    R D   L   + ++V P      A         + G +  +  LL   
Sbjct: 172 ENEQILKVGIGLRGDGQALKRDWDIQVSPRLDLNWAMAQLGA-GKEMGTRQLVAALLHKR 230

Query: 131 ISK--AQQSSDWSADDLSDEQLQY 152
           I K      S+W    LS  Q+QY
Sbjct: 231 IDKPKKITLSNWQQVPLSQAQVQY 254


>gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6]
 gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6]
          Length = 931

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 30/181 (16%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
               A DTET G+   + +L  V  +        I +       P+          L  +
Sbjct: 343 AKLFAFDTETTGIDAHQAQLVGVSFAVQPHEAAYIPLTHAYIGVPDQLDRDTVLRALKPL 402

Query: 70  LVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121
           L D  + KI  + +FD+ +L           G+ V+ + F T + S +      +H +  
Sbjct: 403 LEDPTKLKIGQHAKFDMNILANCAIDGDPAQGITVQGIAFDTMLESYVLNATATRHDMDS 462

Query: 122 NLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
             K+ L  +        D     A  L+ +Q+       YAA D      L  +   +L 
Sbjct: 463 LAKKYLDYD---TVSFQDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQELHAQLA 519

Query: 173 R 173
            
Sbjct: 520 A 520


>gi|321248466|ref|XP_003191137.1| hypothetical protein CGB_A0490C [Cryptococcus gattii WM276]
 gi|317457604|gb|ADV19350.1| hypothetical protein CNB05310 [Cryptococcus gattii WM276]
          Length = 935

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 54/184 (29%), Gaps = 34/184 (18%)

Query: 31  GLMPR----RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD- 85
                         +VQL      V I  +       P +  ++ D K  K+    + D 
Sbjct: 332 STRRYDFQQYP-TALVQLCDERMIVLI-HLQDKMDLPPKVAELVCDPKVYKLGVQSKGDG 389

Query: 86  ---IAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINISK--A 134
              +    + F       ++     +         HG     L    +  LG  + K   
Sbjct: 390 RKLVRDFPHHFRQYGPAGLYELSQMAHAIDPERAGHGSRLIKLATLCRAYLGRELDKNMK 449

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
            ++ DW A +L++ Q  YAA+DV     +     +                       LD
Sbjct: 450 IRTGDW-AGELNEVQKAYAANDVFVSVQIFNALKKLADERN---------------VTLD 493

Query: 195 LLGW 198
           L GW
Sbjct: 494 LDGW 497


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 72/235 (30%), Gaps = 43/235 (18%)

Query: 3   TIRVHEGDIPAE----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI----- 53
           T  V   D+         AR    +A DTET  L   +  L    L+  D T D      
Sbjct: 377 TAYVTIRDLATLDRWIADARATGLVAFDTETTSLDAMQAELVGFSLAIADNTADPTGTKI 436

Query: 54  ----IRIAAGQ------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFY 91
               I +A                        P L  +L D    K+    ++D  ++  
Sbjct: 437 RAAYIPLAHKNGVGDLLGGGLADNQISMRDALPRLKSLLEDAAVLKVAQNLKYDYLLMQR 496

Query: 92  TFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS--- 146
             G+  R    T + S +    T  HG+    ++ LG      K    S     +++   
Sbjct: 497 Y-GIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GKANVTFDL 553

Query: 147 ---DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              D    YAA D      L L    +L   G + +        L   A ++  G
Sbjct: 554 VDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 608


>gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 928

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1]
 gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1]
          Length = 929

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 59/183 (32%), Gaps = 32/183 (17%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------------------AGQK 61
             +A DTET  L      L  V L    G    I +                        
Sbjct: 343 GEVAFDTETTSLNEMTAELVGVSLCIEPGAACYIPLLHRGGGDDLFADTSLAEGQIPFDD 402

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  ML D    K+    ++D+ VL    GV V P+  T + S       + HG+  
Sbjct: 403 AMEILQPMLEDRSVMKVAQNAKYDVKVLANY-GVEVAPIDDTMLLSYALHAGLHNHGMDG 461

Query: 122 NLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
             +  LG         I   K+Q + D     ++D    YAA D          F  KL 
Sbjct: 462 LAERYLGHTPLPIKSLIGSGKSQITFD--RVPIADA-APYAAEDADITLRFHKLFKPKLH 518

Query: 173 RLG 175
           ++G
Sbjct: 519 QVG 521


>gi|296472380|gb|DAA14495.1| Werner syndrome [Bos taurus]
          Length = 707

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 21  DAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           D +  D E                 R+ ++QL   +    +  I++       L  +L +
Sbjct: 75  DVVGFDIE-------WPPFKKGTLSRVALIQLCVAESKCYLFHISSMSGFPQGLKMLLEN 127

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131
           E  +K       D   L   F + ++ +   T +A+   +       L   +K L G  +
Sbjct: 128 EAIKKAGVGIEQDQWKLLRDFDINLKSIVELTDVANEKLKC-IETWSLNGLVKYLFGKQL 186

Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
              ++ + SDWS   L+++Q  YAA+D      +  +  
Sbjct: 187 LKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQKLA 225


>gi|126175491|ref|YP_001051640.1| 3'-5' exonuclease [Shewanella baltica OS155]
 gi|125998696|gb|ABN62771.1| 3'-5' exonuclease [Shewanella baltica OS155]
          Length = 315

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            +    +  DTET       +R     L ++Q++  D    + + A   +    L  +L 
Sbjct: 127 LQAEQVLGFDTET---RASFERGVQHPLSLIQIATAD-ACYLFQHAILGEQFTQLKTVLE 182

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           DE   K+    R D   L   +G+ V        A           G +  +  LLG  I
Sbjct: 183 DENILKVGVGLRSDAQALKRQWGINVASKLDLNWALAQLGAEKE-MGTRQLVATLLGTRI 241

Query: 132 SK--AQQSSDWSADDLSDEQLQY 152
            K      S+W    LS  Q+ Y
Sbjct: 242 DKPKKITLSNWQHVPLSGAQIDY 264


>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
 gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 897

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +    D+ AE      D+ A DTET  L      L  +     +G    I +      
Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P           L  +  D K+ K+ H  +FD  VL          V  T I + + ++
Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421

Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157
              +H +    KE LGI            K QQ+ D         Q+       YAA D 
Sbjct: 422 SG-KHDIDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471

Query: 158 VHLHALRLQFTEKLQR 173
                L   F   L++
Sbjct: 472 DITFRLFNHFKALLEQ 487


>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 928

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I
 gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5'
           exonuclease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 928

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
 gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
          Length = 949

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 18/188 (9%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +I  HE  +      +   A A DTET  L     RL  +  +   G    I +     +
Sbjct: 352 SILTHESLMRWVEVLKKAPAFAFDTETDSLNNIDARLIGLSFAVEPGKAAYIPLRHDYLD 411

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           AP           L  +L D+   KI    +FD  ++    G+ +  + F T + S +  
Sbjct: 412 APEQLPVDEVLTALKPILEDKTILKIGQNLKFDRGIMENE-GIELNGIYFDTMLESYVLN 470

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165
           + +++H +    ++ L    +  ++ +      L+  Q++      YAA D      L  
Sbjct: 471 SVSSRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQ 530

Query: 166 QFTEKLQR 173
               +++ 
Sbjct: 531 ALYPQIEA 538


>gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 928

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 928

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score = 66.6 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 21/203 (10%)

Query: 14  ECAARYVDAIA---------VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-- 62
           E AA+  + +A          DTET G     DR+  + L+        +          
Sbjct: 371 ETAAQLREVVAAVGRYPEFCFDTETTGFDIFNDRIVGLSLAVEPFKAWYVPFLEKDTPEY 430

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKD 121
           A  +  +  DEK  KI    +FD+ VL    G+ +R  ++ T I   L    + +H +  
Sbjct: 431 AEIVRPLFEDEKIAKIGQNIKFDLMVLRR-LGITIRGRMYDTMILHYLLDPES-RHNMNA 488

Query: 122 NLKELLGINISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             ++ L     + +      +  L+      +   +YAA D      L+      ++++G
Sbjct: 489 LAEKYLNYKPIEIETLIGKGSKQLTMDLVNVERVKEYAAEDADVTLQLKQALYPMIEQIG 548

Query: 176 RSDLA-TSCCNFLMDRAELDLLG 197
              L        +   A++++ G
Sbjct: 549 LQHLYFEIEEPMIAVLADIEMAG 571


>gi|296472378|gb|DAA14493.1| Werner syndrome [Bos taurus]
          Length = 744

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 21  DAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           D +  D E                 R+ ++QL   +    +  I++       L  +L +
Sbjct: 75  DVVGFDIE-------WPPFKKGTLSRVALIQLCVAESKCYLFHISSMSGFPQGLKMLLEN 127

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131
           E  +K       D   L   F + ++ +   T +A+   +       L   +K L G  +
Sbjct: 128 EAIKKAGVGIEQDQWKLLRDFDINLKSIVELTDVANEKLKC-IETWSLNGLVKYLFGKQL 186

Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
              ++ + SDWS   L+++Q  YAA+D      +  +  
Sbjct: 187 LKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQKLA 225


>gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 928

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 928

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 928

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12]
 gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12]
          Length = 595

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 40/200 (20%)

Query: 3   TIRVHEGDIPAECAARYVDAI-------AVDTETLGLMPRRD--RLCIVQLSPGDGTVDI 53
           TI V E D   E  A + D I       AVDTET GL    D  R  +VQ         +
Sbjct: 14  TINVVERD---EDLAEFRDFIRAHKHCLAVDTETTGLDIYSDTFRCRLVQFGT-QSEAWV 69

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASR 108
           + +  G     N++  L +  +  +     +D+ VL          +  + V  T+I ++
Sbjct: 70  LPVELGGGIPENVIEALYEVDKL-VMQNASYDLQVLDQIGYAAMEDLWPK-VLDTQILAK 127

Query: 109 LT-----RTYTNQHGLKDNLKELLGIN-----------ISKAQQSSD---WSADDLS-DE 148
           L            H L++ + E +              ++K  +++    WS  DL   E
Sbjct: 128 LVDPRPFEAGGFGHSLEELIAEFIDKEQAENVKGLMTKLAKEHKTTKAKIWSTIDLFHPE 187

Query: 149 QLQYAASDVVHLHALRLQFT 168
            L YA  D +    +  +  
Sbjct: 188 YLTYAGMDTIFTARICSKLA 207


>gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 661

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 19/196 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVD 72
            R    +++DTET    P    L  +  S  +     + I   ++ A         +  D
Sbjct: 344 LRTNKILSLDTETTSTSPMEAELVGLSFSVKEKEAFYVAIPKDREEALQYVNIFKPLYED 403

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            +  K+    ++D  VL    GV ++  +F T +A  L +    +H +    + LL    
Sbjct: 404 PEILKVGQNIKYDYVVLRNY-GVDIQGKMFDTMLAHYLIQPEL-RHNMDYMAETLLHYQT 461

Query: 132 --------SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
                    K +   +    DLS E++ +YAA D      L+     +L+ +G   L   
Sbjct: 462 MHIEELIGPKGKGQKN--MRDLSPEEIYEYAAEDADITLRLKNVLEPQLKEVGAKSLFWD 519

Query: 183 -CCNFLMDRAELDLLG 197
                +   A+++L G
Sbjct: 520 IEMPLVKVLADMELNG 535


>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
 gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
          Length = 932

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 18/188 (9%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +I  HE  +      +   A A DTET  L     RL  +  +   G    I +     +
Sbjct: 335 SILTHESLMRWVEVLKKAPAFAFDTETDSLNNIDARLIGLSFAVEPGKAAYIPLRHDYLD 394

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           AP           L  +L D+   KI    +FD  ++    G+ +  + F T + S +  
Sbjct: 395 APEQLPVDEVLTALKPILEDKTILKIGQNLKFDRGIMENE-GIELNGIYFDTMLESYVLN 453

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165
           + +++H +    ++ L    +  ++ +      L+  Q++      YAA D      L  
Sbjct: 454 SVSSRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQ 513

Query: 166 QFTEKLQR 173
               +++ 
Sbjct: 514 ALYPQIEA 521


>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
 gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
          Length = 949

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 72/204 (35%), Gaps = 19/204 (9%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEK 74
              ++  DTET GL P    L  +  S   G    I     ++ A  ++ +L       +
Sbjct: 374 KQPSVCFDTETTGLNPLTAELVGIAFSWEAGKGFYIAFPKEKEAAQEIIELLRPFFEATE 433

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130
            EKI    ++D+ VL     V    +F T +A  L      +H +    +  L       
Sbjct: 434 IEKIGQNLKYDLKVLRKYDIVVKGQLFDTMLAHYLINP-DMRHNMDILAETYLNYTPVSI 492

Query: 131 ---ISKA--QQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
              I K    Q S     D+   +Q +YA  D      L+  F+++L       L T   
Sbjct: 493 TELIGKKGKNQKS---MRDVPVADQTEYAVEDADITLQLKEHFSKELGEANTQKLFTDIE 549

Query: 184 CNFLMDRAELDLLGWENVDIFSHS 207
              L   A ++  G      F +S
Sbjct: 550 VPLLRVLAAMEAEGINLDKTFLNS 573


>gi|156053686|ref|XP_001592769.1| hypothetical protein SS1G_05690 [Sclerotinia sclerotiorum 1980]
 gi|154703471|gb|EDO03210.1| hypothetical protein SS1G_05690 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 603

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 39  LCIVQLSPGD--GTVDIIRIAAG---QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
           + ++QL+  +  G   I         Q  AP +  ++ D +  K+      D   L    
Sbjct: 227 VSLIQLATEERVGLFHIALFPQDKVSQLVAPTMKKIMEDPEVTKVGVAISADCTRLRKYL 286

Query: 94  GVRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKA--QQSSDWSA 142
            +    +F      RL +   +Q           L   +++ L + + K    +SSDW  
Sbjct: 287 DIHSVSIFELSHLYRLVKYSASQEYGLINKRLVSLAKQVEDHLHLPLFKGGSVRSSDW-T 345

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             LS +Q+ YAASD    + L      K Q L 
Sbjct: 346 RGLSIQQISYAASDSYAGYHLYNILESKRQALN 378


>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
 gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
          Length = 952

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
            + +++DTET G  P    L  +  S  +     + + A +  A      L  +  +E  
Sbjct: 378 TEILSIDTETTGTEPMEAELVGMSFSDAENRAYYVPVPANRDEALKIVNELRPLYENENS 437

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    GV+V+  +F T +A  + +    +H +    +  L    I+I
Sbjct: 438 MKVGQNIKYDMIVLQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLQYQTIHI 495

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DL  E + +YA  D      L+    ++L+      L    
Sbjct: 496 DELIGARGKNQK----NMRDLPAEDVYRYACEDADVTLKLKNVLEKELKEQSAEHLFYEI 551

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 552 EMPLVPVLVNIESNG 566


>gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18]
 gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18]
          Length = 920

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76
           + +++DTET         L  +  S  +     + + A  + A         +   +K  
Sbjct: 348 EFVSIDTETTSTDAISAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPLYESDKIM 407

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDN-LKEL 126
           KI    ++D  VL          +F T IA  L +   +             +   ++EL
Sbjct: 408 KIGQNIKYDYEVLTRYGVTLQGKMFDTMIAHYLIQPELHHNMDYMAETLLSYQTIHIEEL 467

Query: 127 LGINISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
           LG    K +     +  DLS   + +YAA D      L+     +L+ LG  +L  +   
Sbjct: 468 LGPKGKKQK-----NMRDLSPTDIYEYAAEDADITLRLKNVLEPRLKELGVEELFWNIEM 522

Query: 185 NFLMDRAELDLLG 197
             +   A+++L G
Sbjct: 523 PLVRVLADMELNG 535


>gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 928

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
 gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
          Length = 929

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 67/184 (36%), Gaps = 30/184 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +    IA DTET G+  ++ +L  +  S   G    + +      AP           L
Sbjct: 338 LKGAKLIAFDTETTGIDAQQAQLVGLSFSVKAGEAAYVPLTHSYMGAPAQLDRDSVLLAL 397

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQHG 118
             +L D K  K+  + +FD+ +L           G+ VR V F T + S +  +   +H 
Sbjct: 398 KPLLEDPKLLKVGQHAKFDMNILANCAIGGDQANGITVRGVAFDTMLESYVLNSTATRHD 457

Query: 119 LKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTE 169
           +    ++ L  +        D     A  L+ +Q+       YAA D      L     +
Sbjct: 458 MDSLAQKYLDHS---TVSFQDIAGKGAKQLTFDQIPLEQAGPYAAEDADVTLRLHQVLFD 514

Query: 170 KLQR 173
           KL  
Sbjct: 515 KLSA 518


>gi|313220402|emb|CBY31256.1| unnamed protein product [Oikopleura dioica]
          Length = 489

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 75/237 (31%), Gaps = 59/237 (24%)

Query: 10  DIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNA 63
           D P + A         + + +D E   L P   ++ ++Q++        ++ I       
Sbjct: 189 DTPKDLAKVRRYIELANYLMIDQEGDQLGP-NGKITVIQINTYESPNCFLLDIKVAGDQE 247

Query: 64  PN-----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  +  ML D K+ K F  G  D A L+ ++G++V      +        Y  +H 
Sbjct: 248 LVKKDGWIRQMLEDPKKIKFFWGGSSDTANLYASYGIKVASFVDLQ-----LVEYHYRHK 302

Query: 119 LKDNL------------------------KELLGINISKAQQSSD---WSADDLSDEQLQ 151
           L                             +LL     K +  +D   W+   L D  L+
Sbjct: 303 LAHLTDGFVEPEVKTHPLGLESAYKYFTDADLLRYKADKGKHKTDHHVWARRPLPDSLLK 362

Query: 152 YAASDVVHLHALRLQFTEKLQRLGR--------------SDLATSCCNFLMDRAELD 194
           YA+ DV  +  L   F + L+                       +C   L    ELD
Sbjct: 363 YASFDVAAMRPLSHLFFKNLELWNWGKIEAAISVSTLSAWPRHRTCFACLQS-VELD 418


>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 928

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
          Length = 933

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 57/184 (30%), Gaps = 29/184 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------- 57
           A     +AVDTET GL      L  + L    G    I +                    
Sbjct: 342 AHERGWLAVDTETTGLNEMVADLVGISLCIEPGEACYIPLTHRDGASDDLFGSDALAEGQ 401

Query: 58  -AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
               +    L  +L D    KI    ++D  +     GV V P+  T + S       + 
Sbjct: 402 MPLDEALKLLKPVLEDPSILKIGQNMKYDAKIFARY-GVDVAPIDDTMLMSYAMHAGEHG 460

Query: 117 HGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           HG+    +  LG         +   + +  +    + +    YAA D      L   F  
Sbjct: 461 HGMDTLSERYLGHTPIPIKPLLGSGKSAITFDKVPIDEA-TAYAAEDADITLRLWKLFKP 519

Query: 170 KLQR 173
           +L R
Sbjct: 520 QLHR 523


>gi|170763502|ref|NP_035851.3| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
 gi|170763504|ref|NP_001116294.1| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
 gi|3885838|gb|AAC78077.1| Wrn protein [Mus musculus]
 gi|29748014|gb|AAH50921.1| Wrn protein [Mus musculus]
 gi|38173728|gb|AAH60700.1| Wrn protein [Mus musculus]
          Length = 1401

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 12/139 (8%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++  +K        I      L  
Sbjct: 88  RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+   +       L   +K +LG  +   K+ + S+WS   L+++
Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202

Query: 149 QLQYAASDVVHLHALRLQF 167
           Q  YAA+D      +  + 
Sbjct: 203 QKLYAATDAYAGLIIYQKL 221


>gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74]
          Length = 605

 Score = 66.2 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 23  LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 83  KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 142 WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195


>gi|156400872|ref|XP_001639016.1| predicted protein [Nematostella vectensis]
 gi|156226141|gb|EDO46953.1| predicted protein [Nematostella vectensis]
          Length = 485

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 12/154 (7%)

Query: 21  DAIAVDTETL---GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKRE 76
             + +D E +   G++     + ++Q++       +IR+       P  L G+L D    
Sbjct: 2   KFVGLDCEWVNKKGVLSH--PVALLQIATPLNDCFLIRLCKMSGAVPPTLKGLLEDRAVL 59

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ- 135
           K       D   L  TFG+ V          R       +  L    +  LG+ + K+  
Sbjct: 60  KFGVGIMDDAKKLSDTFGLAVSGCVD----LRHLVLRQGKLSLGALAQRFLGVRMDKSWH 115

Query: 136 -QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            Q S+W  + LSD Q+ YAA+D +    + +   
Sbjct: 116 VQCSNWEVEHLSDRQVAYAANDAIVAVHVFMALD 149


>gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29]
 gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase
 gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29]
          Length = 607

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 31/195 (15%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGT-VDIIRIA 57
            +  H  D+    +    + + +AVDTET GL       R  +VQ      + V  I   
Sbjct: 16  NVVEHPEDLDGFRDFIRAHQNCLAVDTETTGLDIYSADFRCRLVQFGTQTESWVLPIEDL 75

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--- 110
                      + V  K   +     +D+ VL   FG+++  ++     T+I ++L    
Sbjct: 76  EMLGREEVHEALDVLNKI--VMQNASYDLQVLDRCFGIKMESLWPKILDTQILAKLVDPR 133

Query: 111 --RTYTNQHGLKDNLKELLGIN-----------ISKAQQSSD---WSADDL-SDEQLQYA 153
                   H L++ + E +              ++K  +++    WS  DL   E L YA
Sbjct: 134 PFGAGGFGHSLEELIAEFISKEQAENVKGLMAKLAKEHKTTKAKIWSTIDLYHPEYLTYA 193

Query: 154 ASDVVHLHALRLQFT 168
             D V    +     
Sbjct: 194 GMDTVFTARICSALA 208


>gi|309356157|emb|CAP37848.2| hypothetical protein CBG_20916 [Caenorhabditis briggsae AF16]
          Length = 717

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           GL    ++ LG  + K +Q S W    L + QL+YAA D   +  L  + +E   ++G
Sbjct: 635 GLSYLCEKFLGKPLDKTEQCSVWDRRPLRNLQLRYAAMDAYCMLMLYDKCSEVFSKMG 692


>gi|268533174|ref|XP_002631715.1| Hypothetical protein CBG20916 [Caenorhabditis briggsae]
          Length = 714

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           GL    ++ LG  + K +Q S W    L + QL+YAA D   +  L  + +E   ++G
Sbjct: 632 GLSYLCEKFLGKPLDKTEQCSVWDRRPLRNLQLRYAAMDAYCMLMLYDKCSEVFSKMG 689


>gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1]
 gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1]
          Length = 915

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 18/176 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET GL  ++ +L  +  +        + +A   + AP           L
Sbjct: 330 LRQAPLFAFDTETTGLDAQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVLLAL 389

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
             +L D  + K+    ++DI +L      + +R V + T + S +  +   +H +    +
Sbjct: 390 KPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQ 449

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
           + L       +  +   A  L+  Q+       YAA D      L      +L + 
Sbjct: 450 KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHQALQARLAQT 505


>gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
 gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
          Length = 942

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 19/194 (9%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----MLVDEK 74
             +++  DTET  L      L  +  S        +     Q  A  LV          +
Sbjct: 367 KQNSVCFDTETTSLKTLDAELVGIAFSWESHKGFYVAFPEDQNEAQELVEKLRPFFESTE 426

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130
            EK+    ++DI VL         P+F T +A  +      +H +    +  L  +    
Sbjct: 427 IEKVGQNLKYDIKVLANYKLKVKGPLFDTMLAHYIINP-DMRHNMNILAETYLNYSPQPI 485

Query: 131 ---ISK--AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
              I K   +Q +      +S ++Q QYA  D      L+  F ++L+      L     
Sbjct: 486 EDLIGKKGKRQKT---MRTVSLEDQTQYAVEDADITFQLKTYFEKELKEASNEPLFKDME 542

Query: 184 CNFLMDRAELDLLG 197
              L   A +++ G
Sbjct: 543 IPLLRVLAAMEIEG 556


>gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET    P    L  +  S  +     + + + +  A         +  +E  
Sbjct: 376 SKILSLDTETTETEPMDAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132
            K+    ++D+ VL     V   P+F T IA  + +    +HG+    +  L    I+I 
Sbjct: 436 LKVGQNIKYDMIVLQNYGAVVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494

Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173
                  K Q+    +  DL  + +  YA  D      L+    ++L+ 
Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADITLKLKNVLEKELKE 539


>gi|321478345|gb|EFX89302.1| hypothetical protein DAPPUDRAFT_310282 [Daphnia pulex]
          Length = 438

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 62/173 (35%), Gaps = 19/173 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKR 75
                 + +  E +        +C + ++  D        + G       L  +  ++K 
Sbjct: 189 LEKESVVGLSMEGVRTGRF-GVVCWIGVATSDHVFLFDMCSLGSTGVNRGLANIFTNDKV 247

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----RTYTNQH--GLKDNLKELLGI 129
            K+ H  RF      + +GV++  VF T++ + +         N++   L  +L ++L +
Sbjct: 248 IKVIHDCRFMSDAFVHQYGVKLNNVFDTQVGALVVVKNKHGSFNRYVPSLTRSLTDILNL 307

Query: 130 ------NISK--AQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                 +  K    +  D   W    L    ++ A  +V  L  LRL   E L
Sbjct: 308 PSMSMYHPRKRMGHEKEDEAIWKTRPLPQHLIEGAVFNVCWLRKLRLAIMEIL 360


>gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114]
 gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114]
          Length = 925

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 26/180 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-------- 68
           A      A+DTET  L  ++  L  + L+  +     + +    K  PNL          
Sbjct: 337 ADNQGYFAIDTETNSLNSQKADLVGISLAINENEAYYVPVGHKNKQDPNLKKQIKIKELV 396

Query: 69  -----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
                 L DE  +K+    ++D+ +     G+ ++    T + S       N+H L    
Sbjct: 397 KVLKPYLEDETVKKVGQNIKYDLKIFLKY-GIELKSFEDTMLLSYSLDAGVNRHNLDLLA 455

Query: 124 KELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           K  L          +   K++ + D   + L D   +YA  D      L   F +++ + 
Sbjct: 456 KTHLDHDNIKFKDVVGTGKSEVTFD---EVLIDNAYRYACEDADVTLKLYNLFKDRIVKE 512


>gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
 gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
          Length = 921

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 18/172 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   L    ++        + +A   + AP           + 
Sbjct: 344 QQADHFAIDTETTNLDYRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREHVLEQIK 403

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E+ +KI H+ ++D  +     G+ ++   F T +AS +      +HG+ D  +  
Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH-GITIQGWYFDTMLASYVLNAAATRHGMDDVARVY 462

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           L    +  +Q +   A   S  Q++      YAA D    + L    + KL+
Sbjct: 463 LSHLTTTFEQIAGKGAKQKSFNQIELEVAAHYAAEDAHVTYRLYEVLSAKLK 514


>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
 gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
          Length = 933

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 74/200 (37%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 350 LKAAELFAFDTETDSLDYMVANLVGLSFATDEGVAAYVPVAHDYLDAPQQLDRDWVLEQL 409

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D++VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 410 KPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIKHDTMLASYVFNSVGGKHDMDSLALR 468

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +      L+  Q++      YAA D      L  +  E +++  +   
Sbjct: 469 FLQHSCISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKT 528

Query: 180 ATSCCN--FLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 529 IYEEIEVPLIPVMSRIERTG 548


>gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 921

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 18/172 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   L    ++        + +A   + AP           + 
Sbjct: 344 QQADHFAIDTETTNLDYRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREHVLEQIK 403

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E+ +KI H+ ++D  +     G+ ++   F T +AS +      +HG+ D  +  
Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH-GITIQGWYFDTMLASYVLNAAATRHGMDDVARVY 462

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+
Sbjct: 463 LSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYAAEDAHVTYRLYEVLSAKLK 514


>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 932

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 349 LKKAEVFAFDTETDGLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVLAQL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD ++L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEIPLLPILSRIERTG 547


>gi|294868076|ref|XP_002765369.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983]
 gi|239865388|gb|EEQ98086.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983]
          Length = 1005

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF------YTFG 94
           +VQL+  D    +   A  +     +  ++       +      D+ VL          G
Sbjct: 493 LVQLATSDNVYLVDIYAGEEGLIDEIGRLVESNNIIVVGFGIAGDLRVLRSSGMEGTRGG 552

Query: 95  VR-VRPVFCTKIASRLTRTYTN--------QHGLKDNLKELLGINISKAQQSSDWSADDL 145
           V     +      + L   Y          Q GL + +K  LG  +SK  + S+W    L
Sbjct: 553 VSSPHRIVD---LNDLVDGYLPSRKGSSKHQRGLTEVVKYFLGKPLSKVMRLSNWRRRPL 609

Query: 146 SDEQLQYAASDVVHLHALRLQFT 168
           S  Q++YA+ D + L     +  
Sbjct: 610 SYRQVEYASLDAIVLLKCIEKIQ 632


>gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
 gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
          Length = 933

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 30/211 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------- 56
           AR    +AVDTET  L      L  + L+   G    I +                    
Sbjct: 342 ARERGWVAVDTETTSLNEMTADLVGISLAVEPGAACYIPLGHRDGDAGDLFGSDKLAEGQ 401

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              Q+    L  ML D    KI    ++D  +     GV V P+  T + S       + 
Sbjct: 402 LPLQQTLDLLKPMLEDPAILKIGQNMKYDAKIFARY-GVAVAPIDDTMLLSYAMHGGLHG 460

Query: 117 HGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           HG+    +  L          +   + +  +    + +    YAA D      L   F  
Sbjct: 461 HGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKVAIDEA-TAYAAEDADITLRLWQLFKP 519

Query: 170 KLQRLGRSDLATS-CCNFLMDRAELDLLGWE 199
           +L R   + +  +     +   AE+++ G +
Sbjct: 520 QLHRAQVTTVYETLERPLVPVLAEMEMHGVK 550


>gi|170596587|ref|XP_001902821.1| 3'-5' exonuclease family protein [Brugia malayi]
 gi|158589271|gb|EDP28335.1| 3'-5' exonuclease family protein [Brugia malayi]
          Length = 704

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           GL    + +LG  + K +Q S W    L D QL+YAA D   +  L  +
Sbjct: 623 GLSALCERVLGKPLDKTEQCSVWDRRPLRDLQLRYAALDAYCMLMLYEK 671


>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
 gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
          Length = 937

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 74/200 (37%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 354 LKAAELFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLEQL 413

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D++VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 414 KPILEDDTQAKVGQNLKYDMSVLARY-GIEMKGIKHDTMLASYVFNSVGGKHDMDSLALR 472

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +      L+  Q++      YAA D      L  +  E +++  +   
Sbjct: 473 FLQHSCISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKT 532

Query: 180 ATSCCN--FLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 533 IYEEIEVPLIPVMSRIERTG 552


>gi|224538568|ref|ZP_03679107.1| hypothetical protein BACCELL_03462 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519812|gb|EEF88917.1| hypothetical protein BACCELL_03462 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 215

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 11/175 (6%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + +D+E             ++ ++Q+S  +    + R+       P ++ 
Sbjct: 36  AVTYLKKYSLLGIDSETRPSFTKGQSH--KVALLQVSSEEDCF-LFRLNLTGLTLP-IIS 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L      K+    R D  +L            C ++   +         L+     L G
Sbjct: 92  LLESPSVTKVGLSLRDDFMMLHKRAPFEQHS--CIELQEYVRMFGIQDKSLQKIYGILFG 149

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             ISK+Q+ S+W A+ L++ Q QYAA+D      +  +  E L+  G  +L    
Sbjct: 150 EKISKSQRLSNWEAEHLTEPQKQYAATDAWACLNIYNRLQE-LKVTGDYELEPDE 203


>gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B]
 gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B]
          Length = 892

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 26/194 (13%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-GQKNAP------NLVGMLVDEKREK 77
           +DTET  L P   +L  + +S  +G    I ++  G KN         L  +L ++    
Sbjct: 322 IDTETTSLDPFEAKLVGISISTMEGKAYYIPVSHFGAKNISKSLIDKFLKQILQEKDYNI 381

Query: 78  IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           +    +FD  +   + G     P F T IA+ L      +  L++   + LG    K   
Sbjct: 382 VGQNLKFDYEIF-KSMGFSPNVPHFDTMIAAYLLNPDEKRFNLEELSLKYLGY---KMIS 437

Query: 137 S------------SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
                        +D+S   L    ++Y+  D    + +  +   K+       L     
Sbjct: 438 FDELVNENVPLFGNDFSYVPLERA-VEYSCEDADVTYRIFRKLGRKIYENEMEKLFYEIE 496

Query: 184 CNFLMDRAELDLLG 197
              +   +E++L G
Sbjct: 497 MPLIDVLSEMELNG 510


>gi|299140705|ref|ZP_07033843.1| 3'-5' exonuclease domain protein [Prevotella oris C735]
 gi|298577671|gb|EFI49539.1| 3'-5' exonuclease domain protein [Prevotella oris C735]
          Length = 223

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 14/156 (8%)

Query: 20  VDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            D + VDTET     +  + ++ ++Q++  D T  + R+      A   + +L D    K
Sbjct: 45  CDILGVDTETRPTFHKGEQHKVALLQVASHD-TCFLFRLNDIGMPASV-IRLLEDRTVPK 102

Query: 78  I---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK 133
           I   +H    DI  L              + I  ++         L+     +    ISK
Sbjct: 103 IGLSWHD---DILSLHRRSEFEPGYFIDLQDIVGKI---GIKDLSLQKLYANIFHQKISK 156

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            Q+ ++W A  L+D+Q QYAA+D      L  +   
Sbjct: 157 RQRLTNWEAGVLTDKQKQYAATDAWTCIKLYEEIRR 192


>gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 884

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 302 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 361

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 362 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 420

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 421 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 474


>gi|319641711|ref|ZP_07996394.1| hypothetical protein HMPREF9011_01992 [Bacteroides sp. 3_1_40A]
 gi|317386685|gb|EFV67581.1| hypothetical protein HMPREF9011_01992 [Bacteroides sp. 3_1_40A]
          Length = 216

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           A    +    + VDTE             ++ ++Q+S  D           +   P+ + 
Sbjct: 37  AVAYLKDQRIVGVDTETRPSFKRGTTH--KVALLQISTQDTCFL---FRLNRIGMPDSLQ 91

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +     KI    + D   L     V          ++   + R       L+     L
Sbjct: 92  EFLMSDTLKIGLSLKDDFNSLRKREDVHPDRGNWI--ELQDYVGRFGIADRSLQKIFANL 149

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            G  ISK+Q+ S+W AD LS+ Q  YAA+D      +    TE L+R G
Sbjct: 150 FGQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCLTE-LERTG 197


>gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 772

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 190 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 249

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 250 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 308

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 309 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 362


>gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 928

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKSPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L     K     D      + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKH---KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|118387584|ref|XP_001026896.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89308663|gb|EAS06651.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 567

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 38/170 (22%)

Query: 17  ARYVDAIAVDTET----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG--ML 70
                 I +D E       L      L ++QL+  +       +A   +    L+   + 
Sbjct: 399 LESAKQIGLDGEFRPAVTKLDNNSQSLALLQLATQNYCFLFDPMALKNEKEYELLQQNIF 458

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            +    KI H    DI                + +AS+L      +  L   L +L  + 
Sbjct: 459 QNPNILKIGHTISGDI----------------SMVASQLNGQLNFKGSLD--LAKLHKVK 500

Query: 131 -----------ISK---AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
                      I+K    +Q+S+WS   L + Q+ Y A D     AL  +
Sbjct: 501 NPEQKQSSLSFIAKFQLGEQTSNWSQRPLREAQIHYGALDAYISIALYNK 550


>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
 gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
          Length = 897

 Score = 66.2 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +    D+ AE      D+ A DTET  L      L  +     +G    I +      
Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P           L  +  D K+ K+ H  +FD  VL          V  T I + + ++
Sbjct: 362 VPQQLELEFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421

Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157
              +H +    KE LGI            K QQ+ D         Q+       YAA D 
Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471

Query: 158 VHLHALRLQFTEKLQR 173
                L   F   L++
Sbjct: 472 DITFRLFNYFKALLEQ 487


>gi|308809271|ref|XP_003081945.1| Werner Syndrome-like exonuclease (ISS) [Ostreococcus tauri]
 gi|116060412|emb|CAL55748.1| Werner Syndrome-like exonuclease (ISS) [Ostreococcus tauri]
          Length = 455

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 13/144 (9%)

Query: 38  RLCIVQLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
           +  +VQ++         V ++                 D  R K     R D   L    
Sbjct: 132 KTSLVQIAAASADLKRKVVVLARIHTAGLTRAFKRWCRDSSRGKTGFNARGDARKLARDH 191

Query: 94  GVRVRPVFCTKI----ASRLTRTYT--NQHGLKDNLKELLGINISKAQQS-SDWSADDLS 146
           GV +  V   ++    A R            L    + +LG  + K +   S+W  + L+
Sbjct: 192 GVEISRVI--ELNALAAERFPGGCPSAPSWSLARLCEHVLGKTLPKDKTRMSNWEREKLN 249

Query: 147 DEQLQYAASDVVHLHALRLQFTEK 170
           + Q++YAA D      +      +
Sbjct: 250 ENQIKYAAMDAWASLMVYRALMRR 273


>gi|74142907|dbj|BAE42489.1| unnamed protein product [Mus musculus]
          Length = 862

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 12/139 (8%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++  +K        I      L  
Sbjct: 88  RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+   +       L   +K +LG  +   K+ + S+WS   L+++
Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202

Query: 149 QLQYAASDVVHLHALRLQF 167
           Q  YAA+D      +  + 
Sbjct: 203 QKLYAATDAYAGLIIYQKL 221


>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
 gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
          Length = 922

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 27/196 (13%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E  +    A  +    +AVDTET  L      L  +  +   G    + +A     AP
Sbjct: 327 LTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAP 386

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L D K +K+    ++DI+VL    G++++ V F T + S +  + 
Sbjct: 387 QQLDKQTALEKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLQGVVFDTMLESYVFNSV 445

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALR 164
            ++H +     + LG    K     D     A  L+  Q+Q      YAA D      L 
Sbjct: 446 ASRHDMDGLALKYLGH---KNIAFEDIAGKGAKQLTFNQIQLETAAPYAAEDADITLRLH 502

Query: 165 LQFTEKLQRLGRSDLA 180
                +L++   ++LA
Sbjct: 503 QHLWPRLEKE--TELA 516


>gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 929

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 18/173 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP            
Sbjct: 347 LKQAEVFAFDTETDGLDTLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAKVLALF 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  KI    +FD  V+     + +R + F T + S +  +   +H +    + 
Sbjct: 407 KPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
            L       ++ +    + L+  Q+       YAA D      L  +   KLQ
Sbjct: 466 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHLHQKLWGKLQ 518


>gi|281425845|ref|ZP_06256758.1| 3- 5 exonuclease domain protein [Prevotella oris F0302]
 gi|281400106|gb|EFB30937.1| 3- 5 exonuclease domain protein [Prevotella oris F0302]
          Length = 227

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 14/156 (8%)

Query: 20  VDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            D + VDTET     +  + ++ ++Q++  D T  + R+      A   + +L D    K
Sbjct: 49  CDILGVDTETRPTFHKGEQHKVALLQVASHD-TCFLFRLNDIGMPASV-IRLLEDRTVPK 106

Query: 78  I---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK 133
           I   +H    DI  L              + I  ++         L+     +    ISK
Sbjct: 107 IGLSWHD---DILSLHRRSEFEPGYFIDLQDIVGKI---GIKDLSLQKLYANIFHQKISK 160

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            Q+ ++W A  L+D+Q QYAA+D      L  +   
Sbjct: 161 RQRLTNWEAGVLTDKQKQYAATDAWTCIKLYEEIRR 196


>gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1043

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 67/206 (32%), Gaps = 29/206 (14%)

Query: 3   TIRVHEGDIPAECAARY-VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---- 57
           TI   E  + A  AA Y    +A+DTET  L P    L  + L    G    + +     
Sbjct: 434 TIVTLEA-LDAVIAAAYEAGLLAIDTETTSLDPMLADLAGLSLCAEPGKAFYVPVGHTSG 492

Query: 58  AGQKN----------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
            GQ                     L  +L D    KI    ++D  VL    GV +RP+ 
Sbjct: 493 EGQDLFEGKGLLPGQLPIGVVLERLKPLLEDPSILKIGQNVKYDWIVLKQH-GVEMRPLD 551

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGIN-----ISKAQQSSDWS-ADDLSDEQLQYAAS 155
            T + S +       HG+    ++ LG              +    A    D+  +YAA 
Sbjct: 552 DTLLLSYVLDAGLTDHGMDVLSEKHLGHKPIPFSAVAGSGRTFIGFARVAIDKATEYAAE 611

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLAT 181
           D      L      +L     + +  
Sbjct: 612 DADVTLRLWRVLKPRLPAEKMTTVYE 637


>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
 gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
          Length = 952

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 23/194 (11%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76
           + +++DTET G  P    L  +  S  +     + + A +  A         +  +E   
Sbjct: 379 EILSIDTETTGTEPMEAELVGMSFSDAENQAYYVPVPANRDEALKIVNEFRPLYENENSM 438

Query: 77  KIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132
           K+    ++D+ VL    GV+V+  +F T +A  + +    +H +    +  L    I+I 
Sbjct: 439 KVGQNIKYDMIVLQNY-GVQVKGKLFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHID 496

Query: 133 -------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
                  K Q+    +  DL  E + +YA  D      L+    ++L+      L     
Sbjct: 497 ELIGAKGKNQK----NMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEHAAEHLFYEIE 552

Query: 184 CNFLMDRAELDLLG 197
              +     ++  G
Sbjct: 553 MPLVPVLVNIESNG 566


>gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
 gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
          Length = 936

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 28/183 (15%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------------------A 58
           R    +AVDTET GL      L  + L    G    I +                     
Sbjct: 347 RERGYVAVDTETTGLDEMVVDLVGISLCVEPGEACYIPLTHKVGGDDLFGGEGLAEGQMP 406

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
             +    L  +L D    KI    ++D  +L    G  V P+  T + S       + HG
Sbjct: 407 LDQALEMLKPVLEDPAILKIGQNMKYDAKILHRY-GADVAPIDDTMLMSYALHAGLHGHG 465

Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +    +  L          +   + +  +    +++  + YAA D      L   F  +L
Sbjct: 466 MDTLSERYLDHKPIPIKPLLGSGKSAITFDRVPIANA-VPYAAEDADITLRLWQLFKPQL 524

Query: 172 QRL 174
            + 
Sbjct: 525 HQE 527


>gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
 gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
          Length = 913

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               + IA DTET  +  ++ ++  V  +  +G    + +A      P           L
Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120
             +L D K+ K+  + ++DI VL         P+      + T + S +  +   +H + 
Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171
               + LG +     +  D     A  L+ +Q+       YAA D      L     +KL
Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500

Query: 172 QR 173
           + 
Sbjct: 501 EA 502


>gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2]
          Length = 913

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               + IA DTET  +  ++ ++  V  +  +G    + +A      P           L
Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120
             +L D K+ K+  + ++DI VL         P+      + T + S +  +   +H + 
Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171
               + LG +     +  D     A  L+ +Q+       YAA D      L     +KL
Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500

Query: 172 QR 173
           + 
Sbjct: 501 EA 502


>gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2]
 gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2]
          Length = 604

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 19/132 (14%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           +    ++  + +DTET GL    D  R  +VQ    +    +I +  G +        L 
Sbjct: 29  DFVRAHLGFLGLDTETTGLDIYSDDFRCRLVQFGTPNE-AWVIPVELGPRYEEEARQALR 87

Query: 72  DEKREK--IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLT-----RTYTNQHGL 119
           +    K  + H   +D+ V+  T G+       + V  TKI + L      +     H L
Sbjct: 88  N---VKGFVLHNASYDLQVIERTLGIPMEDMWPK-VTDTKILAHLVDPRPFKEGGIGHKL 143

Query: 120 KDNLKELLGINI 131
           ++ +K  +  N+
Sbjct: 144 EELVKHYIDANV 155


>gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 913

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               + IA DTET  +  ++ ++  V  +  +G    + +A      P           L
Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120
             +L D K+ K+  + ++DI VL         P+      + T + S +  +   +H + 
Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171
               + LG +     +  D     A  L+ +Q+       YAA D      L     +KL
Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500

Query: 172 QR 173
           + 
Sbjct: 501 EA 502


>gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1]
          Length = 913

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               + IA DTET  +  ++ ++  V  +  +G    + +A      P           L
Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120
             +L D K+ K+  + ++DI VL         P+      + T + S +  +   +H + 
Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171
               + LG +     +  D     A  L+ +Q+       YAA D      L     +KL
Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500

Query: 172 QR 173
           + 
Sbjct: 501 EA 502


>gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 964

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKR 75
            + +A+DTET G  P    L  +  S  +     I + AG++ A         +  ++K 
Sbjct: 391 SEILALDTETTGTDPMDAELVGMSFSIAENQAFYIPVPAGREEATKIVREFESVFKNDKS 450

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    G+ +R  +F T +A  + +    +H +    +  L    I+I
Sbjct: 451 LKVGQNIKYDMLVLQNY-GIEIRGRLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 508

Query: 132 S-------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DLS + +  YA  D      L+    ++L++     L    
Sbjct: 509 EELIGPRGKGQK----NMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEI 564

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 565 EMPLVPVLVNIESNG 579


>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 931

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D  A DTET  L      L  V  +  +G    + +A    +AP           L
Sbjct: 348 LKAADVFAFDTETDSLDYMVANLVGVSFATEEGVAAYVPVAHDYLDAPEQLDRDWVLEQL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 408 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +      L+  Q++      YAA D      L  +    +++  +   
Sbjct: 467 FLQHSCISFEQIAGKGKKQLTFNQIELEQASPYAAEDADVTLRLHNRLLANIEQDEKLKT 526

Query: 180 ATSC 183
               
Sbjct: 527 IYEE 530


>gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1]
 gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I
 gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1]
          Length = 913

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               + IA DTET  +  ++ ++  V  +  +G    + +A      P           L
Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120
             +L D K+ K+  + ++DI VL         P+      + T + S +  +   +H + 
Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171
               + LG +     +  D     A  L+ +Q+       YAA D      L     +KL
Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500

Query: 172 QR 173
           + 
Sbjct: 501 EA 502


>gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
 gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
          Length = 913

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 32/182 (17%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               + IA DTET  +  ++ ++  V  +  +G    + +A      P           L
Sbjct: 328 LEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRAL 387

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120
             +L D K+ K+  + ++DI VL         P+      + T + S +  +   +H + 
Sbjct: 388 KPLLEDPKKLKVGQHAKYDINVLANA----STPIALRGVAYDTMLESYVLDSTATRHDMD 443

Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171
               + LG +     +  D     A  L+ +Q+       YAA D      L     +KL
Sbjct: 444 SLALKYLGHS---TIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKL 500

Query: 172 QR 173
           + 
Sbjct: 501 EA 502


>gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
 gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
          Length = 949

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET    P    L  +  S  +     + + + +  A         +  +E  
Sbjct: 376 SKILSLDTETTETEPMDAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132
            K+    ++D+ VL     V   P+F T IA  + +    +HG+    +  L    I+I 
Sbjct: 436 LKVGQNIKYDMIVLQNYGAVVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHID 494

Query: 133 -------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173
                  K Q+    +  DL  + +  YA  D      L+    ++L+ 
Sbjct: 495 ELIGPKGKNQK----NMRDLDPKDVYLYACEDADITLKLKNVLEKELKE 539


>gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703]
 gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703]
          Length = 931

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 18/174 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +     A DTET  L      L  V  +   G    + +     +AP           L 
Sbjct: 349 KTKGVFAFDTETDSLDTISTTLVGVSFAINAGEAAYLPLGHDYLDAPEQLDRDKVLALLK 408

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L D    KI    +FD  V+    G+ +R + F T + S +  +   +H +    +  
Sbjct: 409 PVLEDASVLKIGQNLKFDKGVMARY-GITLRGIAFDTMLESYVLDSVAGRHDMDSLSERY 467

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           L       ++ +    + L+  Q+       YAA D      L    +EKL + 
Sbjct: 468 LNHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRLHQVLSEKLNKE 521


>gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1]
          Length = 959

 Score = 65.8 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           TI   +          +    A+DTET  +  +  +L  + +S  D     I +      
Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108
                              +L +    KI  + ++D A +F  +G+ + P    T +AS 
Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472

Query: 109 LTRTYTNQHGLKDNLKELLGIN 130
           +      +HG+    K  LG+ 
Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494


>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
 gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
          Length = 992

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 67/225 (29%), Gaps = 70/225 (31%)

Query: 5   RVHEGDIPAE----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI------- 53
            V   D+P       AAR    +A DTET  L P +  L  V L+  D            
Sbjct: 370 YVTIRDLPTLEGWIAAAREAGFVAFDTETTSLDPMQADLVGVSLALQDNAASPGAATIRA 429

Query: 54  ------------IRIAAGQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFY 91
                          + G K A N          L G+L D    K+    ++D  V+  
Sbjct: 430 AYVPLGHKTGRDDLFSDGLKLAENQIPMDAALTALKGLLEDASVLKVAQNLKYDYLVMKR 489

Query: 92  TFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---------------------IN 130
             G+ +R    T + S +       HG+    +  LG                     ++
Sbjct: 490 H-GIVIRGFDDTMLLSYVLEAGVGAHGMDSLSERWLGHTPIPYKEVAGSGKSLVTFDLVD 548

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           I KA                 YAA D      L L    +L  +G
Sbjct: 549 IDKAT---------------AYAAEDADVTLRLWLVLKPRLAAVG 578


>gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46]
 gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46]
          Length = 1016

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 60/184 (32%), Gaps = 32/184 (17%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPN----------LV 67
           VDTET  L   R  L  V L+   G    I +A        G+   P+          L 
Sbjct: 432 VDTETNALDAHRADLVGVSLATAPGRAAYIPLAHRGSEDLFGEGLLPDQLPWDAVRARLK 491

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L D    K+    ++D  VL    G+ ++P   T + S +       HG+ +  +  L
Sbjct: 492 PLLEDPAVLKVGQNVKYDWLVLVRH-GIEIQPYDDTMLISYVLDAGKGSHGMDELARRHL 550

Query: 128 GINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           G         +D          +    L      YAA D      L      +L    R+
Sbjct: 551 GHQP---ITFADVTGTGRAKVTFDRVPLDKA-TAYAAEDADVTLRLWRLMKPRLAAEHRA 606

Query: 178 DLAT 181
            +  
Sbjct: 607 TVYE 610


>gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1]
          Length = 959

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           TI   +          +    A+DTET  +  +  +L  + +S  D     I +      
Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108
                              +L +    KI  + ++D A +F  +G+ + P    T +AS 
Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472

Query: 109 LTRTYTNQHGLKDNLKELLGIN 130
           +      +HG+    K  LG+ 
Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494


>gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E]
          Length = 959

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           TI   +          +    A+DTET  +  +  +L  + +S  D     I +      
Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108
                              +L +    KI  + ++D A +F  +G+ + P    T +AS 
Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472

Query: 109 LTRTYTNQHGLKDNLKELLGIN 130
           +      +HG+    K  LG+ 
Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494


>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
 gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
          Length = 953

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
            + +++DTET G  P    L  +  S  +     + +   ++ A      L  +  +EK 
Sbjct: 380 TEILSIDTETTGTEPMEAELVGMSFSDAENKGYYVPVPPNREEALKIINELRPLYENEKS 439

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    GV+VR  +F T +A  + +    +H +    +  L    I+I
Sbjct: 440 LKVGQNIKYDMIVLQNY-GVQVRGALFDTMLAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 497

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DL  E + +YA  D      L+    ++L+  G   L    
Sbjct: 498 DELIGAKGKNQK----NMRDLPAEDVYRYACEDADITLKLKNVLEKELKEQGAEHLFYEI 553

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 554 EMPLVPVLVNIETNG 568


>gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62]
 gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62]
          Length = 932

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 72/205 (35%), Gaps = 30/205 (14%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------------AAGQKN-- 62
             +AVDTET  L   R  L  + L    G    I I                A GQ    
Sbjct: 345 GYVAVDTETTSLNEMRAELVGISLCVKAGQACYIPINHKEGANDDLFGSDKLAEGQMAEA 404

Query: 63  --APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  ML D+   KI    ++D  +     GV V P+  T + S       + HG+ 
Sbjct: 405 VVLSMLKPMLQDDSILKIGQNMKYDAKIFAR-CGVDVAPIDDTMLMSYAQNAGLHNHGMD 463

Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
                LLG         +   + +  +   D+++  ++YAA D      L      +L  
Sbjct: 464 TLSDRLLGHTPIPIKSLLGTGKSAITFDRVDVAEA-VKYAAEDADITLRLWQHLKPQLHV 522

Query: 174 LGRSDLATS-CCNFLMDRAELDLLG 197
            G + +  +     +   AE+++ G
Sbjct: 523 KGVTTVYETLERPLVPVLAEMEMTG 547


>gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 933

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 16/174 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L P +  L  + ++   G    +        AP           L
Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTQALAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           V +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 411 VPLLTDPAVRKLGQHGKYDLHVMRRHGVELAGYAHDTLLESFVLNSGSARHDMDSLAKRY 470

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           LG +  K +      A  +   Q+      +YAA D      L      KL   
Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHHVLGPKLAAE 524


>gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1]
          Length = 959

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           TI   +          +    A+DTET  +  +  +L  + +S  D     I +      
Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108
                              +L +    KI  + ++D A +F  +G+ + P    T +AS 
Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472

Query: 109 LTRTYTNQHGLKDNLKELLGIN 130
           +      +HG+    K  LG+ 
Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
            + +A+DTET G  P    L  +  S  +     + + A +K A         +  +EK 
Sbjct: 368 SEILALDTETTGTDPMDAELVGMSFSITENQAFYVPVPAERKEAIKIVREFEPVFKNEKS 427

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    G+ VR  +F T +A  + +    +H +    +  L    I+I
Sbjct: 428 LKVGQNIKYDMLVLQNY-GIEVRGKLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 485

Query: 132 S-------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DLS +++  YA  D      L+    ++L++     L    
Sbjct: 486 EELIGPKGKGQK----NMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEI 541

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 542 EMPLVPVLVNIESNG 556


>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
 gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
          Length = 889

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 30/218 (13%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           ++  E          +   I +DTET  L  R   L  + L         I +A  +   
Sbjct: 297 VQTSEALAQMAAVLGHASRIVIDTETTSLDARTAGLVGISLCAELDRAWYIPLAHIEATG 356

Query: 64  PN-------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
                          L  +L      K+ H  ++D  VL    GV + P+  T +A+ L 
Sbjct: 357 TPVPGQLPISEVMAVLEPLLTCADILKVGHNLKYDWTVLKMQTGVEIFPLADTMVAAHLL 416

Query: 111 RTYTNQHGLKDNLKELLGINI---------SKAQQSSD-WSADDLSDEQLQYAASDVVHL 160
                   L D   E+ G+ +          K    +D ++   L +    Y+  DV   
Sbjct: 417 EK-GRTLKLDDLCAEI-GLELTSFAEVVAEDK---RADAFAYVALKEA-CHYSCEDVYGA 470

Query: 161 HALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
            +L   F EKL       L        +   A++++ G
Sbjct: 471 LSLWQDFGEKLSDKALDGLFYDVEMPIIPVLAKMEIGG 508


>gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 956

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           TI   +          +    A+DTET  +  +  +L  + +S  D     I +      
Sbjct: 351 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 410

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108
                              +L +    KI  + ++D A +F  +G+ + P    T +AS 
Sbjct: 411 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 469

Query: 109 LTRTYTNQHGLKDNLKELLGIN 130
           +      +HG+    K  LG+ 
Sbjct: 470 VINAAATRHGMDALAKHYLGVQ 491


>gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7]
          Length = 956

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           TI   +          +    A+DTET  +  +  +L  + +S  D     I +      
Sbjct: 351 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 410

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108
                              +L +    KI  + ++D A +F  +G+ + P    T +AS 
Sbjct: 411 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 469

Query: 109 LTRTYTNQHGLKDNLKELLGIN 130
           +      +HG+    K  LG+ 
Sbjct: 470 VINAAATRHGMDALAKHYLGVQ 491


>gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 959

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           TI   +          +    A+DTET  +  +  +L  + +S  D     I +      
Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108
                              +L +    KI  + ++D A +F  +G+ + P    T +AS 
Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472

Query: 109 LTRTYTNQHGLKDNLKELLGIN 130
           +      +HG+    K  LG+ 
Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494


>gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1]
          Length = 959

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           TI   +          +    A+DTET  +  +  +L  + +S  D     I +      
Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108
                              +L +    KI  + ++D A +F  +G+ + P    T +AS 
Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472

Query: 109 LTRTYTNQHGLKDNLKELLGIN 130
           +      +HG+    K  LG+ 
Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494


>gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169]
          Length = 956

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           TI   +          +    A+DTET  +  +  +L  + +S  D     I +      
Sbjct: 351 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 410

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108
                              +L +    KI  + ++D A +F  +G+ + P    T +AS 
Sbjct: 411 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 469

Query: 109 LTRTYTNQHGLKDNLKELLGIN 130
           +      +HG+    K  LG+ 
Sbjct: 470 VINAAATRHGMDALAKHYLGVQ 491


>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
 gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
          Length = 933

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 69/178 (38%), Gaps = 18/178 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 350 LKAAELFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLEQL 409

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D++VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 410 KPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIKHDTMLASYVFNSVGGKHDMDSLALR 468

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177
            L  +    +Q +      L+  Q++      YAA D      L  +  E +++  + 
Sbjct: 469 FLQHSCISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKL 526


>gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
 gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
          Length = 911

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 20/191 (10%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------- 65
            +  AR     A DTET  L   + RL    ++   GT   + +      AP+       
Sbjct: 327 DDIKAR--GFFAFDTETTSLNYMQARLVGFSMAIRPGTAAYVPLGHDYPGAPDQLDFEQV 384

Query: 66  ---LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKD 121
              L  +L +    K+    ++D  +L    G+ +R +   T + S +  +   +H +  
Sbjct: 385 LAKLKPILENADILKLGQNLKYDSNILCNH-GITLRGITEDTMLESYVLDSVGTRHDMDS 443

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG 175
              + LG   +K Q  +   A  L+  Q+       YAA D      L    + KL+ + 
Sbjct: 444 LALKYLGRGTTKFQDIAGKGAKQLTFNQIALEQAAPYAAEDADVTLRLHEVLSPKLKAVP 503

Query: 176 RSDLATSCCNF 186
           R     +    
Sbjct: 504 RLHQLYAELEV 514


>gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 19/194 (9%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           V E  +     A +     A DTET  L+  R  L  +  +   G    + +       P
Sbjct: 299 VTEDQLDDLIHALKKAGRFAFDTETTSLVATRADLVGISFAIKPGEGWYLPVGHRYLGVP 358

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  ++ D +  KI    ++D+ VL    G+ V  +   T +AS L    
Sbjct: 359 EQLDRALVIDKLRPLMADTQLAKIAQNAKYDLLVLRRA-GLEVAGLSCDTMLASYLANPA 417

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQF 167
              HGL     ELLG       + +      +  E+++      YA  D      L  + 
Sbjct: 418 AKSHGLDTLASELLGYRTIGYTEVTGKGKKQIGFEEVEIEKATVYATEDADITLRLADKL 477

Query: 168 TEKLQRLGRSDLAT 181
             +L   G+ +L  
Sbjct: 478 EPQLAETGQGELFR 491


>gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4]
 gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4]
          Length = 959

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           TI   +          +    A+DTET  +  +  +L  + +S  D     I +      
Sbjct: 354 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 413

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108
                              +L +    KI  + ++D A +F  +G+ + P    T +AS 
Sbjct: 414 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 472

Query: 109 LTRTYTNQHGLKDNLKELLGIN 130
           +      +HG+    K  LG+ 
Sbjct: 473 VINAAATRHGMDALAKHYLGVQ 494


>gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8]
          Length = 956

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------ 56
           TI   +          +    A+DTET  +  +  +L  + +S  D     I +      
Sbjct: 351 TITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADF 410

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASR 108
                              +L +    KI  + ++D A +F  +G+ + P    T +AS 
Sbjct: 411 DVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYD-AHIFKKYGINISPWQMDTMLASY 469

Query: 109 LTRTYTNQHGLKDNLKELLGIN 130
           +      +HG+    K  LG+ 
Sbjct: 470 VINAAATRHGMDALAKHYLGVQ 491


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKR 75
            + +A+DTET G  P    L  +  S  +     I + AG++ A         +  ++K 
Sbjct: 368 SEILALDTETTGTDPMDAELVGMSFSIAENQAFYIPVPAGREEATKIVREFESVFKNDKS 427

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    G+ +R  +F T +A  + +    +H +    +  L    I+I
Sbjct: 428 LKVGQNIKYDMLVLQNY-GIEIRGRLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 485

Query: 132 S-------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DLS + +  YA  D      L+    ++L++     L    
Sbjct: 486 EELIGPRGKGQK----NMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEI 541

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 542 EMPLVPVLVNIESNG 556


>gi|294955496|ref|XP_002788534.1| hypothetical protein Pmar_PMAR010065 [Perkinsus marinus ATCC 50983]
 gi|239904075|gb|EER20330.1| hypothetical protein Pmar_PMAR010065 [Perkinsus marinus ATCC 50983]
          Length = 663

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 22/144 (15%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           I +D E            + Q++  D    I  +    + +  L   L   +  ++  + 
Sbjct: 520 IGIDVEWSSG----PGAALFQVASEDTVYLIDMLVPEIRQSSTLFSTLR--RVRRVLGFS 573

Query: 83  -RFDIAVL--FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
              D+  +      G     V   ++          +  L+ ++   LG  + K +Q S+
Sbjct: 574 ISADLERIPQLKECG-----VIDVQV--------DKRGSLQRHVAGQLGAYLDKTEQCSE 620

Query: 140 WSADDLSDEQLQYAASDVVHLHAL 163
           W+   LS+ Q  YAA D   L AL
Sbjct: 621 WADRPLSESQKNYAALDAYTLLAL 644


>gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581]
 gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581]
          Length = 922

 Score = 65.8 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 70/210 (33%), Gaps = 24/210 (11%)

Query: 3   TIRVHEGDIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
            + + E  +  E  AR  D  A   D ET  L      +  V L+   G    I +A   
Sbjct: 324 DVVITEQAVLDEWLARLADCEAFCFDLETTSLSYMEADIVGVGLALEPGEAAYIPLAHDY 383

Query: 61  KNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
            +AP           L  +  D  + KI    ++DI+VL         P+  T + S + 
Sbjct: 384 LDAPEQLDRQAVLEALAPLWADAGKAKIGQNLKYDISVLARHGHEVAGPLHDTMLESYVL 443

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLH 161
            +   +H +     + LG    K     D     A  L+  Q+       YA  DV    
Sbjct: 444 DSTATRHDMDSLALKYLG---EKTVSFEDIAGKGAKQLTFNQIALEQAAPYACEDVDITL 500

Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
            L  +   +++  GR           + R 
Sbjct: 501 RLHRELRPRVEGQGRLAEVLDNLERPLVRV 530


>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
 gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 346 LKAADVFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPAQLDRDWVLEQL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 406 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +      L+  Q++      YAA D      L  +  E + +  +   
Sbjct: 465 FLQHSCISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKA 524

Query: 180 ATSCCNF 186
                  
Sbjct: 525 IYQEIEV 531


>gi|309361664|emb|CAP29572.2| hypothetical protein CBG_10060 [Caenorhabditis briggsae AF16]
          Length = 816

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 31/199 (15%)

Query: 4   IRVHEGDIPAECAA----RYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDII 54
           I   E ++   C           +  D+E              ++  +QL   D T  I 
Sbjct: 447 IVKTESELEDLCVEMDEVENGTFVGYDSEFRPGHLTDTNTI--KVATIQLCFHDTTYLID 504

Query: 55  RIAAGQKNAPN------LVGMLVDEKREKIFHYGRFDIAVLF------YTFGVR-VRPVF 101
            +    +  P+         +   +K   +    + DI  LF        F +  +    
Sbjct: 505 CVELENEKLPDKMWIRLYQSIFESKKLTVVGFDLKHDIEALFSIHPIRQQFKIEDIENFV 564

Query: 102 C----TKIASRL---TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
           C    ++I   +       +    L +  +ELL I I K++Q+ +W +  L   Q+ YA 
Sbjct: 565 CVRRFSEILMEIDINILNLSKSCRLVNLSEELLDITIDKSEQNGNWMSRPLRKSQIVYAT 624

Query: 155 SDVVHLHALRLQFTEKLQR 173
            D V +  +  +  E  Q+
Sbjct: 625 MDSVVVLKVFEKVLELAQK 643


>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
          Length = 940

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 25/195 (12%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAP----NLVGMLVDEK 74
           D  A DTET G+ P   +  +V +S    +     + + A ++ A     +    L + K
Sbjct: 367 DFFAFDTETDGIDPM--KAGLVGMSFAVKENEAWYVPVPAAREEADKVLAHFSPALQNPK 424

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             KI    +FDI V+         P+F T IA  L      +HG+    +  L     + 
Sbjct: 425 SFKIGQNIKFDILVVRKYGIRIAGPLFDTMIAHYLLNPEL-RHGMDYLAETYLKYKTVRI 483

Query: 135 QQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
           ++           +QL           +YAA D      L+  F   L + G   L    
Sbjct: 484 EE----LIGPKGRKQLCMRDVPIPQVAEYAAEDADITLKLKNYFAPCLDKEGLESLFYDI 539

Query: 183 CCNFLMDRAELDLLG 197
               +   AE++  G
Sbjct: 540 EMPLIYVLAEMEYTG 554


>gi|332024229|gb|EGI64433.1| Werner syndrome ATP-dependent helicase [Acromyrmex echinatior]
          Length = 208

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 14/183 (7%)

Query: 9   GDIPAECAARYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
             I  +   + +  I  D E           +  +VQ+   D    ++ + + +K     
Sbjct: 19  AQICDDLIKKEIVPIGFDLEWPFN-FQTGSGKTALVQICLEDSVCYLLYVYSLKKLPAAF 77

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR------PVFCTKIASRLTRTYTNQHGLK 120
           V +L   K + +    + D+  L   F                   +      + +  L+
Sbjct: 78  VELLCHSKVKLVGVNIKNDVWKLGRDFKEFPAQKVVENNCLDCGTYANRVLKRSCRWSLE 137

Query: 121 DNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK---LQRLG 175
                LL   ISK    + S W    LS+ Q  YAA+D      L      K   +++  
Sbjct: 138 KLTAYLLKKKISKNPDVRMSKWHIQPLSNAQKNYAATDAYVSLLLHTTLDAKAITIEKEN 197

Query: 176 RSD 178
           ++D
Sbjct: 198 QND 200


>gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 593

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 13/167 (7%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD--EKREKIFHYG- 82
           D ET G +    RL  +QL  GD   D   + A Q   P +   +    E    +FH G 
Sbjct: 4   DCETNGFLHVMTRLWTIQL--GDANTDEATVYADQIGFPPIKDAIKRLKEADRVVFHNGQ 61

Query: 83  RFDIAVLFYTF-GVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
            FDI  + + + G      V+ T +A+RL       + L D  K  LG    K +   D+
Sbjct: 62  GFDIHAINHFYPGTLTPHQVWDTLVAARLLNPSERANSLDDWGKR-LGEY--KGE-FKDF 117

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           S    S E ++YA  DVV    L  +   +L+  G+S    +   ++
Sbjct: 118 SR--FSKELVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYI 162


>gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
 gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
          Length = 888

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 32/203 (15%)

Query: 23  IAVDTETLGLMPRRDRLCIV--QLSPGDGTVDIIRI---AAGQKNAPNLVGMLVDEKREK 77
           +A DTET  L  +  +  +V    +  +     + I     G  +   L   L  E   K
Sbjct: 321 VAFDTETDDLDTK--KANLVGFSFAYSEEKAYYVPIGHNYLGVGDQVGLDKAL--EAISK 376

Query: 78  IF------HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           IF      H  +FD+++L+       + +  T I + L     +  GL+   K  L  ++
Sbjct: 377 IFEHTIIGHNLKFDLSLLYRYGIDEKKDIVDTMILAWLVDP-GSSVGLESVAKRFLDHDM 435

Query: 132 -------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-- 182
                   K +   D+S   + D   +YA+ D V  + +  +  + L++ G S L     
Sbjct: 436 IAYKETVKKGE---DFSQVSI-DAACKYASEDAVITYMVYFKLLDALRKQGASHLIDEAK 491

Query: 183 --CCNFLMDRAELDLLGWENVDI 203
                F+     ++  G + +DI
Sbjct: 492 KVEFPFVNTLIHMEQAGIK-IDI 513


>gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM]
 gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM]
          Length = 933

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 29/181 (16%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--------------------AAGQ 60
             +A+DTET  L   +  L  + L+   G    I +                        
Sbjct: 346 GYVAIDTETTSLNEMQAELVGISLAVEPGQACYIPLGHREGASDDLFGSDALAEGQLPRD 405

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +L D    KI    ++D  +     G+ + P+  T + S    +  + HG+ 
Sbjct: 406 AVLSALRPVLEDAAVLKIGQNMKYDAKIF-AGLGLTIAPIDDTMLMSYALNSGIHNHGMD 464

Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              +  L  N       +   + +  +    + +  ++YAA D      L   F  +L +
Sbjct: 465 ALSERYLAHNPIPIKTLLGTGKSAVTFDKVPIDEA-VKYAAEDADITLRLWHMFKPQLHQ 523

Query: 174 L 174
            
Sbjct: 524 K 524


>gi|157874025|ref|XP_001685508.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128580|emb|CAJ08712.1| hypothetical protein LMJF_32_1880 [Leishmania major strain
           Friedlin]
          Length = 753

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 30/194 (15%)

Query: 17  ARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGML 70
           ARY D   IA+D E   L      +CI+ L+    TV II +    A        L  +L
Sbjct: 541 ARYSDTLTIALDLEGRSLGRMGS-ICIITLATYS-TVYIIDVVMLGAEALYAGSPLKRVL 598

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--GLKDNLKELLG 128
                 K+    R D   LF+ +GVR++ V   +I+S      T+ H  G+K  +  +LG
Sbjct: 599 ESRDIMKLMFDCRADCDALFFLYGVRLQNVCDLQISSCFALFPTSPHLPGMKS-VFLVLG 657

Query: 129 INISKAQQSSD----------------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +   +     +                W    L+D  +QY A DV +  A +L   + ++
Sbjct: 658 LFTDEDAGIKNAGRHLFNPRCGGSFDWWEERPLTDVLVQYCAVDVKYFFAAQLILQDHVE 717

Query: 173 ---RLGRSDLATSC 183
              RLG + LA+ C
Sbjct: 718 QGCRLGEARLASVC 731


>gi|326432840|gb|EGD78410.1| hypothetical protein PTSG_09106 [Salpingoeca sp. ATCC 50818]
          Length = 1063

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 23   IAVDTETLGLMPRRDRLC--IVQLSPGDGTVDIIRIAA------GQKNAPNLVGMLVDEK 74
            + +DTE      R+ R+   ++Q++  D    +  +         Q  A  L  +   E 
Sbjct: 906  VGIDTE-----WRQPRVACTVMQIAVCDSVWIVDTLIHTKTKQYAQHVAALLEFLFACEH 960

Query: 75   REKIFHYGRFDIAVLFYTFGVRV-RPV---FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
               +    + D+  +     V   +P+      +   R       Q  L    + + G  
Sbjct: 961  VHVLGFSFKDDVRHIIPLCPVLASKPLVSFTDVQQLVRRQLKKKGQPSLSLACERVFGRP 1020

Query: 131  ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
            ++K +Q S+W    L  +QL+YAA D   L  + 
Sbjct: 1021 LNKMEQCSNWERRPLRRDQLEYAAIDAWCLIGIY 1054


>gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083]
 gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083]
          Length = 945

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 65/211 (30%), Gaps = 32/211 (15%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------------AAG 59
           AA     +AVDTET GL      L  + +    G    I +                A G
Sbjct: 353 AAYARGYVAVDTETTGLNDMIADLVGISMCSEAGKACYIPLTHKDASTDDLFGSDELADG 412

Query: 60  QKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           Q +       L  +L D    KI    ++D  +     G+ + P+  T + S       +
Sbjct: 413 QLDLEIAIAALKPLLEDPSVMKIGQNMKYDAKIFARY-GIEIAPIDDTMLISYAQHAGLH 471

Query: 116 QHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            HG+    +  LG         +   + +  +    +      YAA D      L     
Sbjct: 472 NHGMDALSERYLGHTPIPIKPLLGTGKSAITFDRVPIDHA-TPYAAEDADITLRLWQHLK 530

Query: 169 EKLQRLGRSDLATSCCN--FLMDRAELDLLG 197
             L    R+           +   A+++  G
Sbjct: 531 PTLHSA-RTTRVYETMERPLVPVLAQMERYG 560


>gi|197927293|ref|NP_001128149.1| Werner syndrome ATP-dependent helicase [Pongo abelii]
 gi|55726573|emb|CAH90053.1| hypothetical protein [Pongo abelii]
          Length = 1486

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 16/128 (12%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTF 93
           ++ ++QL   +    +  I++       L  +L ++  +K        I      L   F
Sbjct: 96  KVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAVKK----AGVGIEGDQWKLLRDF 151

Query: 94  GVRVRP---VFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            ++++    +    +A++  +  T    L   +K  LG  +   K+ + S+WS   L+++
Sbjct: 152 DIKLKNFVELAD--VANKKLKC-TETWSLNSLVKHPLGKQLLKDKSIRCSNWSKFPLTED 208

Query: 149 QLQYAASD 156
           Q  YAA+D
Sbjct: 209 QKLYAATD 216


>gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895]
 gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895]
          Length = 928

 Score = 65.4 bits (159), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNHAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKARKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
 gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
          Length = 930

 Score = 65.4 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D  A DTET  L      L  V  +  +G    + +A    +AP           L
Sbjct: 347 LKASDLFAFDTETDSLDYMVTNLVGVSFATDEGVAAYVPLAHDYLDAPQQLDRDWVLEQL 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 407 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  +    +++  +   
Sbjct: 466 FLQHSCISFEQIAGKGKNQLTFNQIDLNEAAPYAAEDADVTLRLHNRLAANIEQDKKLKA 525

Query: 180 ATSCCNF 186
                  
Sbjct: 526 VYEEIEM 532


>gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
 gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
          Length = 937

 Score = 65.4 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 29/185 (15%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------------------- 57
           R    +AVDTET G       L  + L    G+   I +                     
Sbjct: 347 RERGWVAVDTETTGFDEMVVDLVGISLCVEPGSACYIPLTHKSGSSDDLFGSDDLADGQM 406

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
             Q     L  +L D    KI    ++D  +     G+ V P+  T + S       + H
Sbjct: 407 PLQDALNLLKPVLEDNSILKIGQNMKYDAKIFARR-GIDVAPIDDTMLMSYAMHAGQHGH 465

Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           G+    +  L          +   + +  +    + D  + YAA D      L   F  +
Sbjct: 466 GMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDA-VAYAAEDADITLRLWQLFKPQ 524

Query: 171 LQRLG 175
           L + G
Sbjct: 525 LHQSG 529


>gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens]
          Length = 939

 Score = 65.4 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 30/184 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET G+  ++ +L  +  +        I +       P           L
Sbjct: 348 LKNAKLFAFDTETTGIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRAL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTRTYTNQHG 118
             +L D  + K+  + +FD+ +L           G+ VR + F T + S +  +   +H 
Sbjct: 408 KPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHD 467

Query: 119 LKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           +    ++ L           D     A  L+ +Q+       YAA D      L     E
Sbjct: 468 MDSLAQKYLNHT---TVSFQDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQTLFE 524

Query: 170 KLQR 173
           KL  
Sbjct: 525 KLSA 528


>gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder]
          Length = 604

 Score = 65.4 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 19/132 (14%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           +    ++  + +DTET GL    D  R  +VQ    +    +I +  G +        L 
Sbjct: 29  DFVRAHLGFLGLDTETTGLDIYSDGFRCRLVQFGTPNE-AWVIPVELGPRYEEEARQALR 87

Query: 72  DEKREK--IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLT-----RTYTNQHGL 119
           +    K  + H   +D+ V+  T G+       + V  TKI + L      +     H L
Sbjct: 88  N---VKGFVLHNASYDLQVIERTLGIPMEDMWPK-VTDTKILAHLVDPRPFKEGGIGHKL 143

Query: 120 KDNLKELLGINI 131
           ++ +K  +   +
Sbjct: 144 EELVKHYIDAPV 155


>gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score = 65.4 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
            + +A+DTET G  P    L  +  S  +     + + A ++ A         +  +EK 
Sbjct: 368 SEILALDTETTGTDPMDAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEPVFKNEKS 427

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    G+ VR  +F T +A  + +    +H +    +  L    I+I
Sbjct: 428 LKVGQNIKYDMLVLQNY-GIEVRGKLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 485

Query: 132 S-------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DLS +++  YA  D      L+    ++L++     L    
Sbjct: 486 EELIGPKGKGQK----NMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEI 541

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 542 EMPLVPVLVNIESNG 556


>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32]
 gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32]
          Length = 891

 Score = 65.4 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 9   GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-- 65
           GD  A           A+D ET  L P    +  +  S  D     I +A      P+  
Sbjct: 300 GDFSALMDKLGTQSIFAIDLETTSLNPFEAEIVGISFSFSDHQAYYIPVAHHYLGVPDQL 359

Query: 66  --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQ 116
                   L  +L+D   +KI    ++D  VL    G+ +  ++  T +AS L     + 
Sbjct: 360 SLAHVLQALRPLLLDPAIKKIGQNIKYDYQVLRRA-GIEMEGIWCDTMLASYLLNPNRSS 418

Query: 117 HGLKDNLKELLGINI 131
           HGL     ELL   +
Sbjct: 419 HGLNALAVELLDHKM 433


>gi|126030364|pdb|2E6L|A Chain A, Structure Of Mouse Wrn Exonuclease Domain
 gi|126030365|pdb|2E6M|A Chain A, Structure Of Mouse Werner Exonuclease Domain
          Length = 208

 Score = 65.4 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 12/139 (8%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++  +K        I      L  
Sbjct: 58  RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 113

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+   +       L   +K +LG  +   K+ + S+WS   L+++
Sbjct: 114 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 172

Query: 149 QLQYAASDVVHLHALRLQF 167
           Q  YAA+D      +  + 
Sbjct: 173 QKLYAATDAYAGLIIYQKL 191


>gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040]
 gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040]
          Length = 935

 Score = 65.4 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 61/184 (33%), Gaps = 29/184 (15%)

Query: 18  RYVDAIAVDTETLGLMPRRDRL-----CIV--QLS---------PGDGTVDIIRIAAGQ- 60
           R    +AVDTET GL      L     C+V  Q             D       +A GQ 
Sbjct: 345 REHGYVAVDTETTGLNEMIADLVGISLCVVPGQACYVPLTHKTGNSDDLFGSDDLAEGQM 404

Query: 61  ---KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D+   KI    ++D  +     G+ V P+  T + S       + H
Sbjct: 405 PLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDVTPIDDTMLLSYALHGGMHGH 463

Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           G+    +  L          +   + +  +    + D    YAA D      L  QF  +
Sbjct: 464 GMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVSIEDA-TPYAAEDADITLRLWQQFKPQ 522

Query: 171 LQRL 174
           L + 
Sbjct: 523 LHQK 526


>gi|156363459|ref|XP_001626061.1| predicted protein [Nematostella vectensis]
 gi|156212923|gb|EDO33961.1| predicted protein [Nematostella vectensis]
          Length = 133

 Score = 65.4 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           +QL+     + +          P +L+ +L + +  K+      D   L     +     
Sbjct: 5   LQLAVNHSCLVLHLFHMRLDLLPRSLLNVLGNIRILKVGSGISGDAVKLLRDTNILCNGR 64

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVV 158
              ++ +++     +  GLK   K +LGI + K +    S+W    L+ +Q+ YAA D  
Sbjct: 65  SDIQVYAKVLALNQDGTGLKKLAKTILGIELDKPKNISLSNWELFPLTYKQVSYAALDAW 124

Query: 159 HLHALRLQF 167
               L ++ 
Sbjct: 125 VSFKLFVEL 133


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
          Length = 935

 Score = 65.0 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
            + +A+DTET G  P    L  +  S  +     + + A ++ A         +  +EK 
Sbjct: 362 SEILALDTETTGTDPMDAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEPVFKNEKS 421

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    G+ VR  +F T +A  + +    +H +    +  L    I+I
Sbjct: 422 LKVGQNIKYDMLVLQNY-GIEVRGKLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHI 479

Query: 132 S-------KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  DLS +++  YA  D      L+    ++L++     L    
Sbjct: 480 EELIGPKGKGQK----NMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEI 535

Query: 183 CCNFLMDRAELDLLG 197
               +     ++  G
Sbjct: 536 EMPLVPVLVNIESNG 550


>gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM
           22836]
          Length = 933

 Score = 65.0 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 19/187 (10%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----MLVDEKREKIFHY 81
           DTET GL P    L  +  +  +G    + + A    A  L+        +EK  KI   
Sbjct: 366 DTETTGLDPIVSELVGMSFAFKEGEAYYVPVPADFDEAKKLIDKFRPFFENEKILKIGQN 425

Query: 82  GRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS----- 132
            ++DI VL     + VR  +F T IA  L      +H +    +  L    I+I      
Sbjct: 426 IKYDIIVLKKY-DIHVRGKLFDTMIAHYLINPEL-RHNMDYMAETYLKYRTIHIDELIGA 483

Query: 133 KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDR 190
           K +   +     L  +Q+  YA  D      L+    + +++   S L        +   
Sbjct: 484 KGKNQLN--MRSLRPDQISDYACEDADVTLKLKRILEKAIEKQDLSKLFYEIELPLIYVL 541

Query: 191 AELDLLG 197
           A+++  G
Sbjct: 542 ADMEFTG 548


>gi|255083480|ref|XP_002504726.1| predicted protein [Micromonas sp. RCC299]
 gi|226519994|gb|ACO65984.1| predicted protein [Micromonas sp. RCC299]
          Length = 1648

 Score = 65.0 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 87   AVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--HGLKDNLKELLG-INISKAQQSSDWSAD 143
                  F      V C + A+   R +  +   GL       LG   I K+QQ SDW A 
Sbjct: 1239 ERFQKRFAGVSCRVVCVREAAIGFRFFRERECRGLAAMCARALGGRAIDKSQQRSDWGAR 1298

Query: 144  DLSDEQLQYAASDVV----HLHALRLQFTEKLQRLG 175
             L+  Q+ YAA D +     L AL  +    + + G
Sbjct: 1299 PLTRAQISYAALDALAPAMILRALAARVNSDVFKNG 1334


>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
 gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
          Length = 898

 Score = 65.0 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 18/164 (10%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75
           DTET  L   +  L  +  + G      I +A    +AP           L  +  D K+
Sbjct: 325 DTETTSLNVMQAELVGLSFAIGGEKPVYIPLAHDYPDAPQQLNRQWVLQQLKPLFEDPKQ 384

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
            KI H+ ++D+ +L +  G+++R + F T + S L  + +NQH L     + L     + 
Sbjct: 385 IKIGHHLKYDMNILAHY-GIQLRGIDFDTMLESYLLDSASNQHSLDSAALKHLDHKTIRF 443

Query: 135 QQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           ++ +   A   +  Q+       YAA D      L      +L 
Sbjct: 444 EEIAGKGAKQKTFNQINLQDAGPYAAEDAAIALRLHETLKPQLD 487


>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
 gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score = 65.0 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L     +   G    + +A    +AP           L
Sbjct: 349 LKNAEVFAFDTETDGLDTLSSNLIGFSFAVAPGEAAYLPVAHDYLDAPTQLDRNWVLAQL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    +FD ++L     + +R + F T + S +  +   +H +    + 
Sbjct: 409 KPLLEDEKALKVGQNLKFDQSMLARY-DIELRGIAFDTMLESYVLDSVAGRHDMDSLAER 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KLQ+  G   
Sbjct: 468 YLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKR 527

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 528 VFQEIEMPLLPILSRIERTG 547


>gi|303271551|ref|XP_003055137.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463111|gb|EEH60389.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 516

 Score = 65.0 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 67/226 (29%), Gaps = 75/226 (33%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65
           A      IAVD E + +  R  R+ +VQ++  +  V +  + A    A            
Sbjct: 250 ANAPGKVIAVDCEGVAM-SRIGRVTLVQIAVPNERVYLFDVQALGSEACFERGGGGGGGE 308

Query: 66  -------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK---IASRL 109
                        L  +L D    K+    R D   L++  G+ +  VF  +   +A+R 
Sbjct: 309 EKDENNATNRSVTLKSVLEDASITKLMFDCRVDSDALYHQHGIALNGVFDIQLADVAAR- 367

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQ--------------------------------- 136
            R  +    L   + +    ++ K                                    
Sbjct: 368 -RAASQSVALLSGVPKCAARHLGKGAAAEANALAAFDGVVDAAAGPDAAAISRVSEHLKS 426

Query: 137 ------SSD-------WSADDLSDEQLQYAASDVVHLHALRLQFTE 169
                 + D       W+   LS +  +YAA D   L  +    ++
Sbjct: 427 KVKASFAPDLGGDGTLWARRPLSADVRRYAALDAWLLVRIHDAMSD 472


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score = 65.0 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76
           +  ++DTET G  P    L  +  S  +     + + A +  A             E   
Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRAEAQKIVNEFRPAFEKEGVL 458

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           K+    ++D+ VL         P+F T +A  + +    +H +    +  L    I+I  
Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q+    +  DLS E + +YA  D      L+    ++L+      L      
Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573

Query: 185 NFLMDRAELDLLG 197
             +     ++  G
Sbjct: 574 PLVPVLTYMERNG 586


>gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
 gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
          Length = 929

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 24/178 (13%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
               A DTET G+  ++ +L  V  +        I +      AP           L  +
Sbjct: 341 AKLFAFDTETTGIDAQQAQLVGVSFAVQPHEAAYIPLTHAYIGAPEQLDRDTVLLALKPL 400

Query: 70  LVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121
           L D  + K+  + +FD+ +L           G+ VR + F T + S +      +H +  
Sbjct: 401 LEDPTKLKVGQHAKFDMNILANCAIGGDPAHGITVRGIAFDTMLESYVLNATATRHDMDS 460

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
             K+ L  +    Q  +   A  L+ +Q+       YAA D      L      +L  
Sbjct: 461 LAKKYLDYDTVAFQDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQALFAQLSA 518


>gi|145476719|ref|XP_001424382.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391446|emb|CAK56984.1| unnamed protein product [Paramecium tetraurelia]
          Length = 510

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 25/168 (14%)

Query: 20  VDAIAVDTETLGLMPRRDRL-------CIVQLSPGDGTVDII--RIAAGQKNAPNLVGML 70
            +A+  D E +       +L       C VQ++           ++   ++   ++  +L
Sbjct: 336 SNAVGYDCEHV---TPWTKLDLDGFKVCFVQIATSSHAFLFDYQKLKDSEEFKNDVRQLL 392

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS--------RLTRTYTNQHGLKDN 122
            +    KI    + D+        +  + +   KI S        ++         L   
Sbjct: 393 ENVGILKIGLSLKDDLKHTVNYLKL--KNI---KIGSIVELQSCFKVLEGDQKLRSLAYI 447

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            +      +SK    S+W    L   Q  YAA D +    + L    K
Sbjct: 448 SEFYFKKKLSKFDTCSNWEYRPLRKAQAHYAALDAIISLQIYLSMVGK 495


>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
 gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
          Length = 942

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 23/196 (11%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----MLVDEK 74
              ++  DTET  L      L  +  S   G    +     +K A  L+        ++K
Sbjct: 367 KQKSVCFDTETTSLNTLDAELVGIAFSWEAGKGFYLPFPEEKKEAQKLIEELRNFFENDK 426

Query: 75  REKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS- 132
            EKI    ++DI VL     + V+  +F T IA  L      +H +    +  L      
Sbjct: 427 IEKIGQNLKYDIKVLDKY-KIDVKGALFDTMIAHYLINP-DMRHNMDVLAETYLNYTPQP 484

Query: 133 ---------KAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
                    K Q     S  D++ D+Q +YA  D      L+  F ++L+      L   
Sbjct: 485 ISELIGKKGKNQG----SMRDVALDKQTEYAVEDADITFQLKNLFEKELEEAETRKLFNE 540

Query: 183 -CCNFLMDRAELDLLG 197
                +   A+++L G
Sbjct: 541 IEIPLVEVLADMELEG 556


>gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2]
 gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2]
          Length = 1013

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 73/223 (32%), Gaps = 30/223 (13%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL-----CI-------VQLS-PGDG 49
           TI   E        A     IA+DTET  L P +  L     C+       V L   G+G
Sbjct: 404 TIVSFERLEAYIAEAIESGIIAIDTETSSLDPMQAELVGLSLCLAPGRAAYVPLRHRGEG 463

Query: 50  TVDII---RIAAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102
             D+     +  GQ ++      L  ML      KI    +FD  VL    G+R+ PV  
Sbjct: 464 AGDLFGGADLVPGQLDSDETLARLKPMLEAPDVLKIAQNAKFDQLVLAQR-GIRLAPVDD 522

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGIN-----ISKAQQSSDWS-ADDLSDEQLQYAASD 156
           T + S +       HG+    ++  G              +    A    D+  +Y+A D
Sbjct: 523 TLLLSYVLDAGRTDHGMDVLAEKYFGHRPIQFGAVAGSGRTFIGFARVALDKATEYSAED 582

Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCN--FLMDRAELDLLG 197
                 L      +L    R            +   A ++  G
Sbjct: 583 ADVTLRLWRVLKPRLAAE-RMSAVYETLERPMVETLARMERRG 624


>gi|217972253|ref|YP_002357004.1| 3'-5' exonuclease [Shewanella baltica OS223]
 gi|217497388|gb|ACK45581.1| 3'-5' exonuclease [Shewanella baltica OS223]
          Length = 320

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 12/143 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
            +    +  DTET       +R     L ++Q++  D    + + A   +    L  +L 
Sbjct: 132 LQAEQVLGFDTET---RASFERGVQHPLSLIQIATAD-ACYLFQHAILGEQFTQLKTVLE 187

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           DE   K+    R D   L   +G+ V        A           G +  +  LL   I
Sbjct: 188 DENILKVGVGLRSDAQALKRQWGINVTSKLDLNWALAQLGAEKE-MGTRQLVATLLSTRI 246

Query: 132 SK--AQQSSDWSADDLSDEQLQY 152
            K      S+W    LS  Q+ Y
Sbjct: 247 DKPKKITLSNWQHVPLSGAQIDY 269


>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891]
 gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891]
          Length = 931

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 348 LKAAEVFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPAQLERDWVLEQL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 408 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +      L+  Q++      YAA D      L  +  E + +  +   
Sbjct: 467 FLQHSCISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKA 526

Query: 180 ATSCCNF 186
                  
Sbjct: 527 IYQEIEV 533


>gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5]
 gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5]
          Length = 881

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 22/175 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA---------PNLV 67
           A     IA+DTET         L  + ++ G+     + I     +            L+
Sbjct: 312 AATAAVIAIDTETTSEHAVEADLVGISIAIGE-QAWYVPIDHAHTDTHRNMPTADVQKLI 370

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
             L       +    ++D+ VL        +P +F T IAS L       HGL     E 
Sbjct: 371 TALDRSDLLLVGQNIKYDLIVLQRHDMALPQPRLFDTMIASYLLDANRRSHGLDQLAVEF 430

Query: 127 LGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           L   +        K     D      +    +YA  D     AL   F  ++++ 
Sbjct: 431 LSHEMIAFKDVVPKGSTFRDVDIP--TAA--RYAGEDAAITLALYNLFAPRIEQE 481


>gi|68074623|ref|XP_679228.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56499925|emb|CAH95040.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 661

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155
               +  T +  ++ + Y     L D   + L   +SK  Q S+W+   LS EQ++YA  
Sbjct: 560 EPENII-TALPKKINKHYFK--SLNDLCFQFLRKKLSKKLQLSNWNKRPLSKEQIEYAGL 616

Query: 156 DVVHLHALRLQFTEK 170
           D   L  +  +  ++
Sbjct: 617 DAYVLIPIEEKLIDE 631


>gi|162149305|ref|YP_001603766.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
          Length = 943

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 51/146 (34%), Gaps = 32/146 (21%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA------------------ 58
           AR     A+DTET GL P R  L  + L+   G    I +A                   
Sbjct: 339 ARTAGFCAIDTETDGLDPLRAGLVGISLAVAPGRACYIPLAHTAEPPPPQLLPDLLLEPA 398

Query: 59  GQKNAPN--------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104
            Q +AP+              L  +L D    KIF   +FD+ VL      +  PV  T 
Sbjct: 399 PQDDAPDPVGPQLETGLALAILGPLLADASVLKIFQNAKFDLLVLTRAGAPQPAPVDDTM 458

Query: 105 IASRLTRTYTNQHGLKDNLKELLGIN 130
           + S       +  G+ +  +  LG  
Sbjct: 459 LISYAQFAGRHGQGMDELSRLYLGHT 484


>gi|322495545|emb|CBZ30850.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 413

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 62/174 (35%), Gaps = 24/174 (13%)

Query: 13  AECAARYVDAIAVDTETLGL-----MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLV 67
           A    +    IA+D E          P+  R+ +VQ    D    +        + P  V
Sbjct: 96  AVEVLQRSRQIAIDVEAFCTPEAIKTPQLGRVSLVQTCS-DVVPVVFLFDVLSLSVPVFV 154

Query: 68  G----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTYTNQHGL 119
                +  DE   K+F   R DI  L     +  + V   ++   A +   R+   + G+
Sbjct: 155 QAIRSVFHDETIRKLFFDCRRDIEALSTQMDLTPKRVLDLQLLFTAVQWKLRSVNRRSGM 214

Query: 120 KDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163
              LK + GI+  +                W    L +  L+YAA DV H+H L
Sbjct: 215 TYVLKSVAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHFLEYAADDVRHIHLL 268


>gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 933

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L P +  L  + ++   G    +        AP           L
Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHALAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 411 APLLTDPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 470

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           LG +  K +      A  +   Q+      +YAA D      L      KL   
Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLAAE 524


>gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 933

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L P +  L  + ++   G    +        AP           L
Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHALAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 411 APLLTDPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 470

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           LG +  K +      A  +   Q+      +YAA D      L      KL   
Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLAAE 524


>gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 921

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 24/201 (11%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------------- 65
               +AVDTET  L   + RL  V LS   G    I    G  +  +             
Sbjct: 337 QKGQVAVDTETDNLDATQARLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQMDLSLLVK 396

Query: 66  -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    KI    ++D+ VL    G+ V+P   T + S       + HG+ +   
Sbjct: 397 KLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELSL 455

Query: 125 ELLGIN-IS-K-----AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
                  IS K      + +  ++   +     +YAA D      L      +L   G +
Sbjct: 456 LYFDHQPISFKSVCGTGKSAITFNHVPIPAA-TRYAAEDADITFRLWALLKPRLSSDGAT 514

Query: 178 DLATSCCNFL-MDRAELDLLG 197
            +       L    A ++  G
Sbjct: 515 RIYEEVDRPLPPVIARMEQAG 535


>gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 933

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L P +  L  + ++   G    +        AP           L
Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHALAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 411 APLLTDPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 470

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           LG +  K +      A  +   Q+      +YAA D      L      KL   
Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLAAE 524


>gi|82793580|ref|XP_728099.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484273|gb|EAA19664.1| Streptococcus pyogenes AMV256, putative [Plasmodium yoelii yoelii]
          Length = 713

 Score = 65.0 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
              +  T +  ++ + Y     L D   + L   +SK  Q S+W+   LS EQ++YA  D
Sbjct: 613 PENII-TALPKKINKHYFK--SLNDLCFQFLRKKLSKKLQLSNWNKRPLSKEQIEYAGLD 669

Query: 157 VVHLHALRLQFTEK 170
              L  +  +  ++
Sbjct: 670 AYVLIPIEEKLIDE 683


>gi|221057512|ref|XP_002261264.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|194247269|emb|CAQ40669.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 738

 Score = 65.0 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            L    +++LG  ++K  Q S+WS   L + Q+ YAA+D   L  L     E+
Sbjct: 657 SLNHLCQQILGKKLNKQLQLSNWSRRPLMESQICYAATDAYVLIVLEQLLIER 709



 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 8/76 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREK 77
            I +D E         +  I+ L+  D    I  +                +L +    K
Sbjct: 490 YIGIDVEWNR----NQKASIISLATMDHIYLIDLLVMDYNYKLLIQSFFKWLLENPFICK 545

Query: 78  IFHYGRFDIAVLFYTF 93
           +F+    D+ +L   F
Sbjct: 546 LFYNFSCDMRILNSFF 561


>gi|72548558|ref|XP_843404.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|323363921|emb|CBZ12927.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 412

 Score = 65.0 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 59/174 (33%), Gaps = 24/174 (13%)

Query: 13  AECAARYVDAIAVDTETLGL-----MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL- 66
           A    +    IA+D E          P+  R+ +VQ    D    +        + P   
Sbjct: 95  AVGVLQRSRQIAIDVEAFCTPEAIKTPQLGRVSLVQTCS-DVVPVVFLFDVLSLSVPVFM 153

Query: 67  ---VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA----SRLTRTYTNQHGL 119
                +  DE   K+F   R DI  L     +  R V   ++         R+   + G+
Sbjct: 154 QAIRPLFHDETIRKLFFDCRRDIEALSTQMDLTPRRVLDLQLLFTSVQWKLRSVNRRSGM 213

Query: 120 KDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163
              LK + GI+  +                W    L +  L+YAA DV H+H L
Sbjct: 214 TYVLKSVAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHFLEYAADDVRHIHLL 267


>gi|221114219|ref|XP_002154256.1| PREDICTED: similar to ZK1098.3 [Hydra magnipapillata]
          Length = 650

 Score = 64.6 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 30/175 (17%)

Query: 12  PAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA---- 63
             +   +    I  DTE           +D++  +QL+  D    +  +     ++    
Sbjct: 477 AEKILFKPKQVIGFDTEWKPSFTRAGE-QDKVSTLQLAVIDKVFIVDMLQLYVADSAENA 535

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVL------FYTFGVRVRPVFC-TKIASRLTRTYT 114
                      +   KI +    D+ +L         F +    +    +I+ ++ +   
Sbjct: 536 LREFFYKFFTSKDVVKIGYGIVGDLKILIGMFAYMKEFILNASNLVDLNEISEKILKYPV 595

Query: 115 ------------NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
                       N+ GL   +  LLG ++ K  Q SDW    LS  Q+QYA  +V
Sbjct: 596 TNAYLYPVQSVQNEKGLSLLIYRLLGQSLDKTFQVSDWDKRPLSTNQIQYAGLNV 650


>gi|146101398|ref|XP_001469106.1| hypothetical protein [Leishmania infantum]
 gi|134073475|emb|CAM72206.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 412

 Score = 64.6 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 62/174 (35%), Gaps = 24/174 (13%)

Query: 13  AECAARYVDAIAVDTETLGL-----MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--- 64
           A    +    IA+D E          P+  R+ +VQ    D    +        + P   
Sbjct: 95  AVGVLQRSRQIAIDVEAFCTPEAIKTPQLGRVSLVQTCS-DVVPVVFLFDVLSLSVPVFM 153

Query: 65  -NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA-SRL---TRTYTNQHGL 119
             L  +  DE   K+F   R DI  L     +  + V   ++  + L    R+   + G+
Sbjct: 154 QALRPVFHDETIRKLFFDCRRDIEALSTQMDLTPKRVLDLQLLFTALQWKLRSVNRRSGM 213

Query: 120 KDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163
              LK + GI+  +                W    L +  L+YAA DV H+H L
Sbjct: 214 TYVLKSVAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHFLEYAADDVRHIHLL 267


>gi|313232841|emb|CBY09524.1| unnamed protein product [Oikopleura dioica]
          Length = 417

 Score = 64.6 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 76/237 (32%), Gaps = 59/237 (24%)

Query: 10  DIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNA 63
           D P + A         + + +D E   L P   ++ ++Q++        ++ I       
Sbjct: 117 DTPKDLAKVRRYIELANYLMIDQEGDQLGP-NGKITVIQINTYESPNCFLLDIKVAGDQE 175

Query: 64  PN-----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  +  ML D K+ K F  G  D A L+ ++G++V      +        Y  +H 
Sbjct: 176 LVKKDGWIRQMLEDPKKIKFFWGGSSDTANLYASYGIKVASFVDLQ-----LVEYHYRHK 230

Query: 119 LKDNL------------------------KELLGINISKAQQSSD---WSADDLSDEQLQ 151
           L                             +LL     K +  +D   W+   L D  L+
Sbjct: 231 LAHLTDGFVEPEVKTHPLGLESAYKYFTDADLLRYKADKGKHKTDHHVWARRPLPDSLLK 290

Query: 152 YAASDVVHLHALRLQFTEKLQRLGR--------------SDLATSCCNFLMDRAELD 194
           YA+ DV  +  L   F + L+                       +C + L    ELD
Sbjct: 291 YASFDVAAMRPLSHLFFKNLELWNWGKIEAAISVSTLSAWPRHRTCFSCLQS-VELD 346


>gi|268573492|ref|XP_002641723.1| Hypothetical protein CBG10060 [Caenorhabditis briggsae]
          Length = 729

 Score = 64.6 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 68/199 (34%), Gaps = 31/199 (15%)

Query: 4   IRVHEGDIPAECAA----RYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDII 54
           I   E ++   C           +  D+E              ++  +QL   D T  I 
Sbjct: 368 IVKTESELEDLCVEMDEVENGTFVGYDSEFRPGHLTDTNTI--KVATIQLCFHDTTYLID 425

Query: 55  RIAAGQKNAPN------LVGMLVDEKREKIFHYGRFDIAVLF------YTFGVR-VRPVF 101
            +    +  P+         +   +K   +    + DI  LF        F +  +    
Sbjct: 426 CVELENEKLPDKMWIRLYQSIFESKKLTVVGFDLKHDIEALFSIHPIRQQFKIEDIENFV 485

Query: 102 C----TKIASRL---TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
           C    ++I   +       +    L +  +ELL I I K++Q+ +W +  L   Q+ YA 
Sbjct: 486 CVRRFSEILMEIDINILNLSKSCRLVNLSEELLDITIDKSEQNGNWMSRPLRKSQIVYAT 545

Query: 155 SDVVHLHALRLQFTEKLQR 173
            D V +  +  +  E  Q+
Sbjct: 546 MDSVVVLKVFEKVLELAQK 564


>gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311]
 gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311]
          Length = 994

 Score = 64.6 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 25/176 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIAAGQKNAPNLVGM--- 69
            +A+DTET  L P R +L  + +  G G+ D+           I         L  +   
Sbjct: 396 PVALDTETTDLNPFRAQLVGIGMCWGPGSDDLAYIPVSHQGDPIPDQLPLETVLQALAPW 455

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L   +  K     ++D  +L          V  T +A    R    +HGL    +   GI
Sbjct: 456 LASGEHPKALQNAKYDRLILLRHGLPLAGVVMDTLLA-DYLRDAAAKHGLDAMAQRDYGI 514

Query: 130 NI---------SKAQQSSDWSADDL-SDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +          +K  ++S++S   L S  Q  Y   DV     L +   ++L+ LG
Sbjct: 515 SPTLFSDLVGKAKEGKASNFSEVPLESAAQ--YCGMDVHLTRKLAIDLNQQLEALG 568


>gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
 gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
          Length = 948

 Score = 64.6 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 65/190 (34%), Gaps = 17/190 (8%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----AGQKNAPNLVGMLVDEKREK 77
           ++  DTET  L P +  L  +  S        +         QK    L      E+ EK
Sbjct: 376 SVCFDTETTDLDPLQAELVGIAFSWEKTKGFYVPFPSEKEEVQKLIEALRPFFEAEEIEK 435

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130
           I    ++DI VL          +F T IA  L      +H +    +  L          
Sbjct: 436 IGQNLKYDIKVLAKYDVEVKGKLFDTMIAHYLINP-DMRHNMDVLAETYLNYTPVSIEEL 494

Query: 131 ISKA--QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFL 187
           I K    Q S   AD   D+Q +YA  D      L+  F ++L       L        +
Sbjct: 495 IGKKGKNQKS--MADVPVDQQTEYAVEDADVTLQLKEHFQKELGEANTQKLFDEIEIPLV 552

Query: 188 MDRAELDLLG 197
              A+++L G
Sbjct: 553 QVLADMELEG 562


>gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 929

 Score = 64.6 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 18/173 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP            
Sbjct: 347 LKQAEVFAFDTETDGLDTLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVLALF 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  KI    +FD  V+     + +R + F T + S +  +   +H +    + 
Sbjct: 407 KPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
            L       ++ +    + L+  Q+       YAA D      L  +   KLQ
Sbjct: 466 YLSHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHLHQKLWGKLQ 518


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
          Length = 978

 Score = 64.6 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T+ H
Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTDSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score = 64.6 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76
           +  ++DTET G  P    L  +  S  +     + + A +  A             E   
Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEGAL 458

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           K+    ++D+ VL         P+F T +A  + +    +H +    +  L    I+I  
Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q+    +  DLS E + +YA  D      L+    ++L+      L      
Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573

Query: 185 NFLMDRAELDLLG 197
             +   A ++  G
Sbjct: 574 PLVPVLAYIERNG 586


>gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 995

 Score = 64.6 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 60/188 (31%), Gaps = 32/188 (17%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA---------GQKNAP--- 64
           AR    +A DTET  L      L  + L+   G    I +           G  N P   
Sbjct: 390 AREAGRVAFDTETTDLSALDAELVGISLAVAPGEACYIPLGHTGPSGDLFGGDDNRPQQL 449

Query: 65  -------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   +  +L D    KI    ++D  V+    G+ +     T + S        QH
Sbjct: 450 AANEALALIGPLLEDPSVLKIGQNIKYDALVMKRR-GIEIVSFDDTMLLSYALDGGRGQH 508

Query: 118 GLKDNLKELLGI---------NISKAQQSSD--WSADDLSDEQLQYAASDVVHLHALRLQ 166
           G+    +  LG            +   + SD  ++A  L     +YAA D      L + 
Sbjct: 509 GMDALAERHLGHMCMTFAQAMGHAPGAKKSDKTFAAMPLDKA-TEYAAEDADVTMRLWMA 567

Query: 167 FTEKLQRL 174
              +L   
Sbjct: 568 LKPRLAAE 575


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score = 64.6 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76
           +  ++DTET G  P    L  +  S  +     + + A +  A             E   
Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEGAL 458

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           K+    ++D+ VL         P+F T +A  + +    +H +    +  L    I+I  
Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q+    +  DLS E + +YA  D      L+    ++L+      L      
Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573

Query: 185 NFLMDRAELDLLG 197
             +   A ++  G
Sbjct: 574 PLVPVLAYIERNG 586


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
          Length = 971

 Score = 64.6 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76
           +  ++DTET G  P    L  +  S  +     + + A +  A             E   
Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEGAL 458

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           K+    ++D+ VL         P+F T +A  + +    +H +    +  L    I+I  
Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q+    +  DLS E + +YA  D      L+    ++L+      L      
Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573

Query: 185 NFLMDRAELDLLG 197
             +   A ++  G
Sbjct: 574 PLVPVLAYIERNG 586


>gi|145352962|ref|XP_001420802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581037|gb|ABO99095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 257

 Score = 64.6 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            L   + E LG  + K  Q S+W A  L+  Q+ YAA D   L  +  + 
Sbjct: 62  SLASIVSETLGYALDKRCQRSNWDARPLAQAQITYAALDAEVLLDIASRL 111


>gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score = 64.6 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMAPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|322704992|gb|EFY96581.1| putative Werner syndrome helicase [Metarhizium anisopliae ARSEF 23]
          Length = 545

 Score = 64.6 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 40/183 (21%)

Query: 22  AIAVDTETLGLMPR-------RDRLCIVQLSPGD--GTVDIIRIAAGQKN--APNLVGML 70
            +  D E     P        R+ + ++Q++     G   +   A G+ +  AP L  ++
Sbjct: 201 VLGFDLE---WFPYASRSSGTRENVSLIQIASPGRIGLFHVAMFAKGEDDLVAPALRTIM 257

Query: 71  VDEKREKI-FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-------------- 115
            D    K+  H    D   +    GV+V+ VF       L+  Y                
Sbjct: 258 EDPNVSKVGVHIQG-DCTRMKNYLGVQVQGVF------ELSHLYKQVKYTATKTPKLINK 310

Query: 116 -QHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               L   + ++L + + K    +SS+W    L  +Q+ YAASD      L      K +
Sbjct: 311 VTVALSTQVHDILKLPLFKGDIVRSSNWMKR-LDYKQILYAASDAYAGIQLYHVLDSKRK 369

Query: 173 RLG 175
           RL 
Sbjct: 370 RLN 372


>gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
 gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
          Length = 929

 Score = 64.6 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 18/173 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D  A DTET GL      L  +  +   G    + +A    +AP+          L
Sbjct: 347 LKLADVFAFDTETDGLDTLTANLIGLSFAIKPGEAAYLPLAHDYLDAPDQLDRATVLALL 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  KI    +FD  V+     + +R + F T + S +  +   +H +    + 
Sbjct: 407 KPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
            L       ++ +    + L+  Q+       YAA D      L      KLQ
Sbjct: 466 YLKHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHLHQTLWGKLQ 518


>gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
 gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
          Length = 864

 Score = 64.6 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 20/158 (12%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR---IAAGQKNAPNLVGMLVDEK 74
           R    +AV+ +T G  P    L  +  SP  G    +    +    +   +L  +L D  
Sbjct: 314 RAAGVLAVELKTDGRNPMDAHLIGIGFSPSRGEGFYVPAEVLEKSPEVKSDLKAVLADPG 373

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             KI H G++    +    G+     F T +A+ L      ++ L+  + + LG+ +   
Sbjct: 374 ITKIIHDGKY-ARTVLAKIGMDFVYNFDTMLAAYLLDPSKPRYDLESVVFDNLGVELKGT 432

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +   D                 V +L  L+   +EKL+
Sbjct: 433 E---DPGRR-------------VAYLIPLKEIMSEKLK 454


>gi|308502918|ref|XP_003113643.1| hypothetical protein CRE_26057 [Caenorhabditis remanei]
 gi|308263602|gb|EFP07555.1| hypothetical protein CRE_26057 [Caenorhabditis remanei]
          Length = 752

 Score = 64.6 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-- 175
           GL    ++LLG  + K +Q S W    L   QL+YAA D   +  L  +  +   +LG  
Sbjct: 670 GLSYICEKLLGRPLDKTEQCSVWDRRPLRHLQLRYAAMDAYCMLMLYDKCKDVFAKLGYD 729

Query: 176 -RSDLATSCCNFLMDRAELDLL 196
            R  LA         R  L LL
Sbjct: 730 VREFLAKQ----TPIRISLPLL 747


>gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
 gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
          Length = 928

 Score = 64.6 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 67/205 (32%), Gaps = 20/205 (9%)

Query: 13  AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65
               AR    D    D ET  L      +  + LS   G    I +A    +AP      
Sbjct: 340 DAWLARLGEADIFCFDLETTSLNYMEADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRA 399

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +  D  + KI    ++DI+VL          +  T +AS +      +H + 
Sbjct: 400 SVLAALKPLWEDPAKAKIGQNLKYDISVLARYDIEVAGRLEDTMLASYVLNATATRHDMD 459

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
               + LG      ++ +   A  L+ +Q+       YA  DV     L  +   ++   
Sbjct: 460 SLALKYLGEKTISFEEIAGKGAKQLTFDQIALEQAAPYACEDVDITLRLHRELRPRVDGE 519

Query: 175 GRSDLATS--CCNFLMDRAELDLLG 197
           GR            +   + ++  G
Sbjct: 520 GRLAAVLDDIELPLVPVLSRMERNG 544


>gi|255086533|ref|XP_002509233.1| predicted protein [Micromonas sp. RCC299]
 gi|226524511|gb|ACO70491.1| predicted protein [Micromonas sp. RCC299]
          Length = 519

 Score = 64.6 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 37  DRL-CIVQLS----PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY 91
            RL  ++Q      P    V  +          +L  +LVD    K+    R D   +  
Sbjct: 167 PRLTSLMQFCYRPRPPAKAVCFLLRLCLTGVTESLRELLVDPTIVKVGLNARGDAHKIRR 226

Query: 92  TFGVRVRPV-----FCTKIASRLTRTY--TNQHGLKDNLKELLGINISK--AQQSSDWSA 142
            F V V  V     F  + A+R          + L   ++  L   + K  + + SDW A
Sbjct: 227 DFNVAVEGVLELRDFARERAARPGHPGSAPESYSLAALVEWQLSHRLPKHASSRMSDWEA 286

Query: 143 DDLSDEQLQYAASD 156
             L+++Q+ YAA D
Sbjct: 287 PKLTEDQVTYAALD 300


>gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164]
 gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164]
          Length = 919

 Score = 64.6 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVD 72
            A+DTET  L  R   +    ++        + +A     AP           +  +L +
Sbjct: 347 FAIDTETTSLDYRVAEMVGFSVAFDAKDAYYVPLAHDYAGAPEQLNREQVLAQIKPILEN 406

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           ++ EKI H+ ++D  +     G+ ++   F T +AS +  +   +HG+ D  +  L    
Sbjct: 407 DQVEKIGHHLKYDAHIFANH-GIELKGWFFDTMLASYVLNSVATRHGMDDVARLYLSHLT 465

Query: 132 SKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           +  +Q +   A   S  Q++      YAA D    + L     EKL+ 
Sbjct: 466 TTFEQVAGKGAKQKSFNQIELEVASPYAAEDAHVTYRLYEVLAEKLKA 513


>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
 gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
          Length = 945

 Score = 64.2 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 60/181 (33%), Gaps = 24/181 (13%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEK 74
              ++  DTET GL      L  +  S   G    +     Q+               E 
Sbjct: 370 QQPSVCFDTETTGLKALEVELIGIAFSYEIGKGYYVSFPENQEETKAILEEFRPFFESEM 429

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130
            EK+ H  ++DI VL          +F T IA  L      +H +    +  L  +    
Sbjct: 430 IEKVGHNLKYDIKVLSNYNMPVKGKLFDTMIAHYLINP-DMRHNMDVLAETYLNYHPVSI 488

Query: 131 ---ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
              I K         + LS       +Q +YA  D    + L+  FT++L     ++L  
Sbjct: 489 TELIGKK------GKNQLSMRVVPIKDQTEYAVEDADITYQLKQHFTKELDSGNVTELFN 542

Query: 182 S 182
            
Sbjct: 543 K 543


>gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1]
 gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1]
          Length = 922

 Score = 64.2 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 25/190 (13%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E  +    A  +     AVDTET  L      L  +  +   G    + +A     AP
Sbjct: 327 LTEAQLDEWIAKLKQASLFAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAP 386

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L D K +K+    ++DI+VL    G+ ++ V F T + S +  + 
Sbjct: 387 QQLDKQFALEKLRPILEDAKLKKVGQNLKYDISVLANA-GITLQGVAFDTMLESYVFNSV 445

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALR 164
            ++H +     + LG    K     D     A  L+  Q+       YAA D      L 
Sbjct: 446 ASRHDMDGLALKYLGH---KNIAFEDIAGKGAKQLTFNQISLETAAPYAAEDADITLRLH 502

Query: 165 LQFTEKLQRL 174
                +L++ 
Sbjct: 503 QHLWPRLEKE 512


>gi|302911223|ref|XP_003050445.1| hypothetical protein NECHADRAFT_48479 [Nectria haematococca mpVI
           77-13-4]
 gi|256731382|gb|EEU44732.1| hypothetical protein NECHADRAFT_48479 [Nectria haematococca mpVI
           77-13-4]
          Length = 542

 Score = 64.2 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 22/183 (12%)

Query: 21  DAIAVDTETLG--LMPRRDR--LCIVQLSPGD--GTVDIIRIAAGQKNAPNLVGMLVDEK 74
             +  D E +     P   R  + ++QL+     G   +    +    AP    ++ DE 
Sbjct: 187 KVLGFDLEWMTWARKPHGPRANVSLIQLASPSRIGLFHVALFRSDDYVAPTFKKIMEDES 246

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR----TYTNQ-----HGLKDNLKE 125
             K+    + D   L    GV  + +F      +L +       ++       L    +E
Sbjct: 247 VTKVGVAIKGDCTRLKTHLGVETKGIFELSHMYKLVKYSKLGQYDRINKSLISLAIQAEE 306

Query: 126 LLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG----RSDL 179
             G+ + K    +SS+W +  LS +Q+ Y+ASD      L     ++ Q+L     R + 
Sbjct: 307 FFGLPLYKGDSVRSSNWMS-LLSAKQVTYSASDAYAGLNLFYVLDQERQKLDPCPPRPEF 365

Query: 180 ATS 182
           A  
Sbjct: 366 AEK 368


>gi|322503119|emb|CBZ38203.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 412

 Score = 64.2 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 24/174 (13%)

Query: 13  AECAARYVDAIAVDTETLGL-----MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--- 64
           A    +    IA+D E          P+  R+ +VQ    D    +        + P   
Sbjct: 95  AVGVLQRSRQIAIDVEAFCTPEAIKTPQLGRVSLVQTCS-DVVPVVFLFDVLSLSVPVFM 153

Query: 65  -NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTYTNQHGL 119
             L  +  DE   K+F   R DI  L     +  R V   ++   A +   R+   + G+
Sbjct: 154 QALRPVFHDETIRKLFFDCRRDIEALSTQMDLTPRRVLDLQLLFTAVQWKLRSVNRRSGM 213

Query: 120 KDNLKELLGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHAL 163
              LK + GI+  +                W    L +  L+YAA DV H+H L
Sbjct: 214 TYVLKSVAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHFLEYAADDVRHIHLL 267


>gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109]
 gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109]
          Length = 986

 Score = 64.2 bits (156), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 7   HEGDIPAE-----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-- 59
            E D+ A              +A DTET  L P R  L  + +  G+    +  I  G  
Sbjct: 371 TETDLDALVQRLMACTDSGLPVAFDTETTDLNPFRAELVGIGICWGETLDALAYIPLGHK 430

Query: 60  --QKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
             + ++P           L   L      K     ++D  +L          V  T +A 
Sbjct: 431 GNEDSSPEQLPLETVLTALAPWLASSNHPKTLQNAKYDRLILLRHGVALEGVVIDTLLA- 489

Query: 108 RLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
              R    +HGL+   +   G         + K Q  +D     L    L Y   DV   
Sbjct: 490 DYLRDAAAKHGLELMAEREFGFQPTAFTDLVGKKQTFAD---VPLEPASL-YCGMDVHVT 545

Query: 161 HALRLQFTEKLQRLG 175
             L L    +L+ +G
Sbjct: 546 RRLALLLRHQLEAMG 560


>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
 gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
          Length = 922

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 24/178 (13%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------- 65
                 D +A DTET GL      L  V  +  +G    + +A    +AP          
Sbjct: 337 ATLTAADVVAFDTETDGLDYMTANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVLA 396

Query: 66  -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123
            L  +L D  + K+    +FD+++L     + ++ + + T + S +  +   +H +    
Sbjct: 397 QLKPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKYDTMLESYVFNSVVGRHDMDSLA 455

Query: 124 KELL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
              L    I+  +           L+  Q+       YAA D      L     EK++
Sbjct: 456 LRYLEHKNISFEEVAGK---GKKQLTFNQIDLDVAGPYAAEDADITLRLHNLLNEKVE 510


>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
 gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
          Length = 928

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A D ET  L      +  +  +   G    + +A    +AP           L
Sbjct: 345 LKTSSLFAFDLETDSLDTLSANIVGISFAIEPGKAAYLPVAHDYLDAPAQLDRNSVLERL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D    K+    ++D  VL     + ++ + F T + S    +  ++H +      
Sbjct: 405 KPLLEDPALLKVGQNLKYDRGVLKNY-DIELQGIKFDTMLESYALSSVGSRHDMDTLSSR 463

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL-GRSD 178
            L       ++ +      L+  Q+       YAA D      L L+   +L++  G  +
Sbjct: 464 WLNHKTVSFEEIAGKGKKQLTFNQIDLEQAAHYAAEDADVTLQLHLKMWPELEKEQGPKE 523

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +  +     L   + ++  G
Sbjct: 524 VFENIEMPLLTVISRIERNG 543


>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
 gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I
 gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
          Length = 997

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 65/241 (26%), Gaps = 61/241 (25%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65
            A     +A D ET GL P   RL    +   +     + +     +             
Sbjct: 386 CACANGVVAFDCETDGLHPHDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTCARS 445

Query: 66  --------------------------------LVGMLVDEKREKIFHYGRFDIAVLFYT- 92
                                           L  +  DE    + H G+FD  V+    
Sbjct: 446 TNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAG 505

Query: 93  -FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADD 144
            F      +F T +A+ L       +G+         I        ++K Q  +      
Sbjct: 506 VFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFA---HVP 562

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWENVDI 203
                ++YAA D      L      +L+  G   +  +     L   A +     E V I
Sbjct: 563 YECA-VRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARM-----EEVGI 616

Query: 204 F 204
           F
Sbjct: 617 F 617


>gi|307104422|gb|EFN52676.1| hypothetical protein CHLNCDRAFT_54323 [Chlorella variabilis]
          Length = 529

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 22/183 (12%)

Query: 3   TIRVHEGDIPAECAA----RYVDAIAVDTE------TLGLMPRRDRLCIVQLSPGDGTVD 52
           T+   EG +PA  AA         +A+D E        G      R+ ++QL+     V 
Sbjct: 133 TVVAAEGQLPAALAALRRSMQDSCVAIDLEWKPEGWAGGGPT---RVALMQLASATVAVL 189

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKI-FHYGRFDIAVLFYTFGVRVRPVF----CTKIAS 107
           +     G +  P+L   L D     I F +   D   +  TFG   R +F      +   
Sbjct: 190 VRVCRLGFRMPPSLRAFLSDPDLTFIGFSWDSSDEVKMRQTFGEGRRELFPRFLDLQQVG 249

Query: 108 RLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
                +    GL    K +LG  + K      S+W A  LS  Q+QY A D V    +  
Sbjct: 250 ASLGYHG--FGLAALTKRVLGFALPKCRKVTMSNWEARQLSARQVQYGALDAVVTGHIFR 307

Query: 166 QFT 168
              
Sbjct: 308 GLR 310


>gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema
           pallidum]
          Length = 997

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 65/241 (26%), Gaps = 61/241 (25%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65
            A     +A D ET GL P   RL    +   +     + +     +             
Sbjct: 386 CACANGVVAFDCETDGLHPHDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTCARS 445

Query: 66  --------------------------------LVGMLVDEKREKIFHYGRFDIAVLFYT- 92
                                           L  +  DE    + H G+FD  V+    
Sbjct: 446 TNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAG 505

Query: 93  -FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADD 144
            F      +F T +A+ L       +G+         I        ++K Q  +      
Sbjct: 506 VFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFA---HVP 562

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWENVDI 203
                ++YAA D      L      +L+  G   +  +     L   A +     E V I
Sbjct: 563 YECA-VRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARM-----EEVGI 616

Query: 204 F 204
           F
Sbjct: 617 F 617


>gi|71662929|ref|XP_818464.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70883717|gb|EAN96613.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 387

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 24/174 (13%)

Query: 19  YVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----ML 70
              +IA+D E       +     R+ ++Q       V +         AP  V      L
Sbjct: 70  KARSIALDIEAF-CTTEQAKQLGRISLLQACSDAKPV-VFLFDVLTLTAPTFVKSVEPFL 127

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTYTNQHGLKDNLKEL 126
            +    K+    R D+  L    G++   V   ++   A +   R+   + G+   LK +
Sbjct: 128 RNRGIRKLLFDCRRDVEALSSQLGLKPEGVLDLQVFFTAIQWKLRSVNRRSGMTYVLKSV 187

Query: 127 LGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            G+                    W    L D  L+YAA DV H+  L     EK
Sbjct: 188 AGLTRQDGDSAVQAAMTLGNRPVWDIRPLPDHFLEYAADDVRHILLLANHLVEK 241


>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
 gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
          Length = 922

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 27/196 (13%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E  +    A  +    +AVDTET  L      L  +  +   G    + +A     AP
Sbjct: 327 LTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAP 386

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L D K +K+    ++DI+VL    G++++ V F T + S +  + 
Sbjct: 387 QQLDKQTALEKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLKGVVFDTMLESYVFNSV 445

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALR 164
            ++H +     + LG    K     D     A  L+  Q+       YAA D      L 
Sbjct: 446 ASRHDMDGLALKYLGH---KNIAFEDIAGKGAKQLTFNQIPLETAAPYAAEDADITLRLH 502

Query: 165 LQFTEKLQRLGRSDLA 180
                +L++   ++LA
Sbjct: 503 QHLWPRLEKE--TELA 516


>gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185]
 gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185]
          Length = 928

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIESGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALDEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
 gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
          Length = 945

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 23/195 (11%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKR 75
            D +++DTET      +  L  +  S        I I + +  A         +  ++K 
Sbjct: 372 SDILSLDTETTSTNTMQAELVGLSFSIEPNKAFYIAIPSDRDKAQKMVNIFKPLYEEDKI 431

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            KI    ++D  VL    G+ ++  +F T IA  L +   + H +    + LL    I+I
Sbjct: 432 LKIGQNIKYDYEVLAQY-GINIKGKMFDTMIAHYLIQPELH-HNMDYMAETLLNYKTIHI 489

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                   K Q+    +  +LS   + +YA  D      L      KL+ +    L    
Sbjct: 490 DELIGAKGKEQK----NMRNLSPTSIYEYACEDADITLQLYNVLLPKLKDVNAEKLFWDI 545

Query: 183 CCNFLMDRAELDLLG 197
               +   A +++ G
Sbjct: 546 EMPLVRVLANMEMNG 560


>gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193]
 gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193]
          Length = 935

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 61/183 (33%), Gaps = 28/183 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--AGQKNA----------- 63
           A     +A+DTET GL      L  V L    GT   I +    G  +            
Sbjct: 345 AYERGYVAIDTETTGLDAMVVDLVGVSLCVEPGTACYIPLTHKQGGDDLFGGEGLAEGQM 404

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  ML D    KI    ++D  +L    G+ V P+  T + S       + H
Sbjct: 405 PLEQALEMLKPMLEDPAVLKIGQNMKYDAKILHRY-GIDVAPIDDTMLMSYALHAGEHNH 463

Query: 118 GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           G+    +  L          +   + +  +    ++D  + YAA D      L   F  +
Sbjct: 464 GMDILSERYLDHKPIPIKPLLGTGKSAITFDRVPIADA-VPYAAEDADITLRLWQHFKPE 522

Query: 171 LQR 173
           L +
Sbjct: 523 LHQ 525


>gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 972

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 19/111 (17%)

Query: 78  IFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI- 131
           +FH  +FD+ VL  TFG     +    +  T IA+ +        GL + + +LL   + 
Sbjct: 459 VFHNAKFDLHVLARTFGLTQKQIDSANIIDTLIAAWMLSPGQTGLGLDNQVMQLLQHEMI 518

Query: 132 ---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
                     K       +   + D   +Y A D V+   L      KLQ+
Sbjct: 519 PIENLIGRGKKQITF---NRTPIKDA-TEYGAEDAVYTLRLWAPLRAKLQK 565


>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
 gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
          Length = 911

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 19/198 (9%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           T+   + ++ +     +     A DTET  L      +  V  +   G    +       
Sbjct: 313 TVVTDQAELDSWIDRLKKAPLFAFDTETTSLRYMDADVVGVSFAIEPGEAAYVPFGHDYM 372

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLT 110
            AP           L  +L D K+ K+    ++D  VL    G+ +  +   T + S + 
Sbjct: 373 GAPEQLDRDTVLSQLKPLLEDPKKAKLGQNLKYDKNVLANH-GINLNGIAEDTMLESYVL 431

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALR 164
            +  ++H +     + LG      +  +   A  L+  Q++      YAA D      L 
Sbjct: 432 NSVGSRHDMDSLAMQYLGEQTITFESIAGKGAKQLTFNQIELEQAGPYAAEDADITLRLH 491

Query: 165 LQFTEKLQRLGRSDLATS 182
                +L++ GR      
Sbjct: 492 QALRPQLEKTGRLQEVYE 509


>gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 1015

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 65/241 (26%), Gaps = 61/241 (25%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65
            A     +A D ET GL P   RL    +   +     + +     +             
Sbjct: 404 CACANGVVAFDCETDGLHPHDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTCARS 463

Query: 66  --------------------------------LVGMLVDEKREKIFHYGRFDIAVLFYT- 92
                                           L  +  DE    + H G+FD  V+    
Sbjct: 464 TNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAG 523

Query: 93  -FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADD 144
            F      +F T +A+ L       +G+         I        ++K Q  +      
Sbjct: 524 VFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFA---HVP 580

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWENVDI 203
                ++YAA D      L      +L+  G   +  +     L   A +     E V I
Sbjct: 581 YECA-VRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARM-----EEVGI 634

Query: 204 F 204
           F
Sbjct: 635 F 635


>gi|71416479|ref|XP_810270.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874777|gb|EAN88419.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 387

 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 24/174 (13%)

Query: 19  YVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----ML 70
              +IA+D E       +     R+ ++Q       V +         AP  V      L
Sbjct: 70  KARSIALDIEAF-CTTEQAKQLGRISLLQACSDAKPV-VFLFDVLTLTAPTFVKSVEPFL 127

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR-LTRTYTNQHGLKDNLKEL 126
            +    K+    R D+  L    G++   V   ++   A +   R+   + G+   LK +
Sbjct: 128 RNRGIRKLLFDCRRDVEALSSQLGLKPEGVLDLQVFFTAIQWKLRSVNRRSGMTYVLKSV 187

Query: 127 LGINISKAQQ----------SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            G+                    W    L D  L+YAA DV H+  L     EK
Sbjct: 188 AGLTRQDGDSAVQAAMALGNRPVWDIRPLPDHFLEYAADDVRHILLLANHLVEK 241


>gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
 gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
          Length = 945

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 30/189 (15%)

Query: 15  CAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------- 62
             AR  +A  +A+DTET  L   R  L  V L+ G      I +  G  +          
Sbjct: 350 WIARAFEARVVAIDTETSALDAMRADLVGVSLALGPNDACYIPLGHGGSDMFAEKPLQVD 409

Query: 63  ----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                  L  +L  +   K+    ++D+ +L    G+ V P+  T + S       ++ G
Sbjct: 410 RAEALAALKPLLESDAVLKVGQNIKYDLNILARQ-GIMVSPIDDTMVMSFCLDAGRSETG 468

Query: 119 LK-----DNLKELLGINISK-------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           L      +  +  L     K        +++  ++   L+D   +YAA D      L   
Sbjct: 469 LAGHGMDELSERHLLHTTMKFKELCGTGKKAISFAEVPLADA-TRYAAEDADVTWRLHRL 527

Query: 167 FTEKLQRLG 175
           F  +L   G
Sbjct: 528 FQPRLAGEG 536


>gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
 gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
          Length = 920

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNL 66
                  A DTET  L     R+  V  +   G+   +             +       L
Sbjct: 338 LEAAPYFAFDTETTSLNYMEARVVGVSFAVEAGSAAYVPFGHDYVGVEQQLSEDWVLAQL 397

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  R K+    ++D  VL    G+ +  + F T + S +  +   +H +    ++
Sbjct: 398 KPLLEDSSRAKVGQNLKYDRNVLANH-GIELNGIQFDTMLESYVLNSTATRHDMDSLARK 456

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            L +   K +  +   A  L+  Q+Q      YAA D      L      KL  
Sbjct: 457 YLDVGTIKFEDIAGKGAKQLTFNQIQLQQAGPYAAEDADITLQLHEVLWPKLAA 510


>gi|224051282|ref|XP_002200512.1| PREDICTED: similar to exonuclease 3-5 domain-like 2 isoform 2
           [Taeniopygia guttata]
          Length = 607

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 22/155 (14%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVDEKRE 76
             + +D E +              +   G   ++R+    A+GQ     L+ ++ D    
Sbjct: 105 PVLGIDCEWM--------------ASSSGLCILVRLPRLVASGQTLPKTLLDIMADSAVL 150

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGINISKA 134
           K+      D   L + +G+ V+     +  +   R     N   LK   +++L   + K+
Sbjct: 151 KVGVGCWEDACKLLHDYGLAVKGSMDLRYLAMRQRKDLLHNCLSLKSLAEKVLNFPLDKS 210

Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              + S+W A++L+ +Q+ YAA D     A+    
Sbjct: 211 PHVRCSNWEAEELTQDQVLYAARDAQVSVAVFFHL 245


>gi|2645409|gb|AAB87366.1| homolog of human Werners syndrome protein [Mus musculus]
          Length = 643

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 36  RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFY 91
           R R+ ++QL   +    +  I++       L  +L ++  +K        I      L  
Sbjct: 88  RSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK----AGVGIEGDQWKLLR 143

Query: 92  TFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            F V++      T +A+   +       L   +K +LG  +   K+ + S+WS   L+++
Sbjct: 144 DFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 202

Query: 149 QLQYAASD 156
           Q  YAA+D
Sbjct: 203 QKLYAATD 210


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 402 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 460

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 461 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 519

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 520 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 577

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 578 RLAAEGLMSVYE 589


>gi|325114680|emb|CBZ50235.1| hypothetical protein NCLIV_007100 [Neospora caninum Liverpool]
          Length = 1189

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 118  GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L++  +++L  ++ KA+Q S+W+   L+  Q +YAA D   L          L+R G 
Sbjct: 1044 SLQEMCRQVLHADLDKAEQRSNWNMRPLTVSQTRYAALDAYVLI----LLEAALRRHGW 1098


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T +H
Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGRH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|157963247|ref|YP_001503281.1| 3'-5' exonuclease [Shewanella pealeana ATCC 700345]
 gi|157848247|gb|ABV88746.1| 3'-5' exonuclease [Shewanella pealeana ATCC 700345]
          Length = 292

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 67/185 (36%), Gaps = 23/185 (12%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETL-----GLMPRRDRLCIVQLSPGDGTVDI-IRIA 57
           +   +    A         I  DTET      G       + ++Q++    +    ++  
Sbjct: 96  VVTPDSLTAAVADIEAQTCIGFDTETAATFEKGRRNPNP-ISLIQIATPTHSYLFRMQGE 154

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-----TKIASRLTRT 112
                   L  +L  +K  K+    R D+  +   F + V  +        ++ +     
Sbjct: 155 NIVPFMAALAPILSGDKLLKVGIGLRSDLNAMKRDFEISVNSMLDLNWLMNQLGA----- 209

Query: 113 YTNQHGLKDNLKELLGINISKAQ--QSSDW---SADDLSDEQLQYAASDVVHLHALRLQF 167
              Q G +     +L + + K++    S+W    A+ LS+ QLQYAA+D      +    
Sbjct: 210 -PKQLGTQQMAATVLALKLPKSKKVTLSNWAKPLAEPLSELQLQYAAADAFVALDILYGL 268

Query: 168 TEKLQ 172
            E+L+
Sbjct: 269 LEQLR 273


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1]
          Length = 978

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGVLAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
 gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
          Length = 920

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 18/170 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGML 70
              A DTET  L  R  ++    ++        + +A   + AP           +  +L
Sbjct: 346 KRFAFDTETTSLDYRIAQIVGFSVAFDAQNAYYVPLAHDYEGAPEQLNREVILAQIKPIL 405

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI- 129
            DE  +KI H+ ++D  VL           F T +AS +  +   +HG+ D  +  L   
Sbjct: 406 EDESVKKIGHHLKYDAHVLENHGIHLAGWYFDTMLASYVLNSVATRHGMDDVARLYLSHL 465

Query: 130 ------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
                    K  +   ++   L      YAA D    + L    + KLQ 
Sbjct: 466 TTTYEQVAGKGAKQKTFNQIPLETA-AHYAAEDAHVTYRLYEVLSSKLQA 514


>gi|113676437|ref|NP_001038930.1| exonuclease 3'-5' domain-containing protein 1 [Danio rerio]
 gi|123911622|sp|Q0P3U3|EXD1_DANRE RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
           AltName: Full=Exonuclease 3'-5' domain-like-containing
           protein 1
 gi|112418997|gb|AAI22449.1| Zgc:154068 [Danio rerio]
          Length = 378

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 30/170 (17%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPR----RDRLCIVQLSPGDGTVDIIRIAAGQK 61
           +HE   PA    +  D I +     G        ++RLC +Q++          +  G  
Sbjct: 120 LHEKFGPAVMHIQEQDVIGI-----GADVYGQSGQERLCWLQVATKKVVYLFDILLLGGP 174

Query: 62  NAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              N L  +L +    K+ H  R     L   F V++  VF T++A  L   +    G  
Sbjct: 175 AFKNGLSMILENTHILKVLHDCRCITRCLRTEFRVQLTNVFDTQVA-ELLLFFNESGGFL 233

Query: 121 ----DNLKELLGINI-----------SKAQQSSD----WSADDLSDEQLQ 151
                +L ELL +++           SK QQS +    W       + L 
Sbjct: 234 PDRPASLPELLQLHLRLTTAEIQPLCSKQQQSRECVQLWYVRPCPPDLLS 283


>gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
 gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
          Length = 607

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 29/185 (15%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRL-----CIV-----------QLSPGDGTVDIIRIAAG 59
           A R    +A DTET  L   +  L      +V           +++ GD      R+  G
Sbjct: 15  AIRAQGYVAFDTETTSLDEMQAELVGVSLALVPGRAAYIPLGHRMAAGDDLFADNRLTEG 74

Query: 60  QKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
           Q         L  +L D    KI    ++D+ ++    GV + PV  T + S       +
Sbjct: 75  QLPLEVVLNALRPVLEDPAVLKIGQNIKYDVKIMARY-GVHLAPVDDTMLLSYALHAGLH 133

Query: 116 QHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            HG+ +  +  L          I   + +  +    +    + YAA D      L   F 
Sbjct: 134 NHGMDELSERYLNHRPIPIKELIGSGKSAVTFDHVPVEKA-VAYAAEDADITLRLWQHFK 192

Query: 169 EKLQR 173
            +L +
Sbjct: 193 PQLPQ 197


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 70/220 (31%), Gaps = 41/220 (18%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDII-------------------- 54
             AR    +A DTET  L   +  L    L+  D T D                      
Sbjct: 410 ADARATGLVAFDTETTSLDAMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVGDL 469

Query: 55  --------RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
                   +I  G   A  L  +L DE   K+    ++D  +L   +G+  R    T + 
Sbjct: 470 LGGGLAENQIPMGDALA-RLKALLEDESILKVAQNLKYD-YLLMKRYGIETRSFDDTMLI 527

Query: 107 SRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVV 158
           S +    T  HG+    ++ LG      K    S     +++      D    YAA D  
Sbjct: 528 SYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GKANVTFDLVDIDRATHYAAEDAD 585

Query: 159 HLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
               L L    +L   G + +        L   A ++  G
Sbjct: 586 VTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARG 625


>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
 gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
          Length = 944

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 27/198 (13%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEK 74
             +++  DTET GL P    L  +  S   G    I     +  A      L      E 
Sbjct: 369 KQNSVCFDTETTGLNPLTAELVGIAFSWEAGKGFYIPFPEDKNQAQEIIETLRPFFESEM 428

Query: 75  REKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130
            EKI    ++DI VL + + ++V+   F + +A  L      +H +    +  L      
Sbjct: 429 IEKIGQNLKYDIKVL-HKYNIQVKGKFFDSMLAHYLINP-DMRHNMDVLSETYLNYTPVS 486

Query: 131 ----ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
               I K         + LS      ++Q +YA  D    + L   F  +L      +L 
Sbjct: 487 ITELIGKK------GKNQLSMRDVPLEKQTEYAVEDADITYQLAQHFRPELAEASTEELF 540

Query: 181 -TSCCNFLMDRAELDLLG 197
            T     L   A+++L G
Sbjct: 541 NTIEIPLLHVLADMELEG 558


>gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----NLVGMLVDEKRE 76
           +  ++DTET G  P    L  +  S  +     + + A +  A             E   
Sbjct: 399 EIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEGAL 458

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           K+    ++D+ VL         P+F T +A  + +    +H +    +  L    I+I  
Sbjct: 459 KVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPEL-RHNMDYLAEIYLHYQTIHIEE 517

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q+    +  DLS E + +YA  D      L+    ++L+      L      
Sbjct: 518 LIGPKGKGQK----NMRDLSPEAIYKYACEDADITLKLKNILEQELKTNDAEKLFYEIEM 573

Query: 185 NFLMDRAELDLLG 197
             +   A ++  G
Sbjct: 574 PLVPVLAYIERNG 586


>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
 gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
          Length = 933

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 72/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +  D  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 350 LKKADVFAFDTETDGLDTLTANLIGLSFAIEPGVAAYLPVAHDYLDAPVQLDRAYVLETL 409

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    +FD   L   + + +R + + T + S +  + + +H +      
Sbjct: 410 KPLLEDEKALKVGQNLKFD-KSLLARYDIDLRGIAYDTMLESYVLDSVSGRHDMDSLSDR 468

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L    KL+   G+  
Sbjct: 469 YLDHKTITFEEIAGKGKNQLTFNQIALEQAAPYAAEDADVTLQLHLAMWPKLKESTGQLK 528

Query: 179 LATS-CCNFLMDRAELDLLG 197
           +        L   + ++  G
Sbjct: 529 VFNEIEMPLLPVLSHIERTG 548


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 577 RLAAEGLMSVYE 588


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 577 RLAAEGLMSVYE 588


>gi|170050482|ref|XP_001861331.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167872069|gb|EDS35452.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 708

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIF 79
            I+ D E + L   R ++ ++QL    G   I  +A      P+  +  +L  EK  K+ 
Sbjct: 606 VISFDCEGINLGV-RGQITMIQLGTTRGEAFIFDVATCPDMVPHGGIKQVLEAEKVIKVI 664

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTK 104
           H  R D   L+  F + +R VF T+
Sbjct: 665 HDCRNDSVNLYNQFQIMLRNVFDTQ 689


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 577 RLAAEGLMSVYE 588


>gi|212636762|ref|YP_002313287.1| 3'-5' exonuclease [Shewanella piezotolerans WP3]
 gi|212558246|gb|ACJ30700.1| 3'-5' exonuclease [Shewanella piezotolerans WP3]
          Length = 294

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 64/189 (33%), Gaps = 28/189 (14%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGL----MPRRDRLCIVQLSPGDGTVDIIRIAA 58
           +I   +    A         I  DTET           + + ++Q++             
Sbjct: 95  SIVTSDTLAAAITDINAQQWIGFDTETAATFEKGRRNSNPVSLIQIATASHCYL---FRM 151

Query: 59  GQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-----TKIASR 108
             +N       L +         K+    R D+  +   F + + P+        ++ + 
Sbjct: 152 VGRNVSIFKAALAEVLSEQSNILKLGIGLRSDVNAMKRDFNIVLSPMLDLNWLMNQLGAA 211

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSAD---DLSDEQLQYAASDVVHLHAL 163
                  Q G       +L + + K+++   S+W+      LS+EQ+ YAA+D +    +
Sbjct: 212 ------KQMGTVQIAASVLSLKLPKSKRVTLSNWALPLDMPLSNEQVLYAATDALVALDI 265

Query: 164 RLQFTEKLQ 172
                 +L+
Sbjct: 266 YHGLFAQLE 274


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 577 RLAAEGLMSVYE 588


>gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
 gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
          Length = 933

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L P +  L  + ++   G    +        AP           L
Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPAQLERRQALAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 411 APLLTDPAVRKLGQHGKYDLHVMRRHGIALAGYSDDTLLQSFVLNSGSARHDMDSLAKRY 470

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           LG +  K +      A  +   Q+      +YAA D      L      KL   
Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLDDATRYAAEDADITLRLHHVLGPKLAAE 524


>gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
 gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
          Length = 949

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 22/170 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET G  P    L  +  S  +     + +   ++ A         +  +E  
Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPVPDNREEALKIVNEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    GV+V+  +F T IA  + +    +HG+    +  L    I+I
Sbjct: 436 LKVGQNIKYDMIVLENY-GVQVKGALFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHI 493

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173
                   K Q+    +  DL  + + +YA  D      L+    ++L+ 
Sbjct: 494 DELIGPKGKNQK----NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKE 539


>gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046]
 gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046]
          Length = 921

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 18/170 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGML 70
              A DTET  L  R  ++    ++        + +A   +NAP           +  +L
Sbjct: 347 KRFAFDTETTSLDYRVAQIVGFSVAFDAQDAYYVPLAHDYENAPAQLDREQILAQIKPIL 406

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGI 129
            DE  +KI H+ ++D  VL    G+ ++   F T +AS +      +HG+ D  +  L  
Sbjct: 407 EDESVQKIGHHLKYDAHVLENH-GIELKGWYFDTMLASYVLNAVATRHGMDDVSRLYLSH 465

Query: 130 NISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
             +  +Q +   A   +  Q++      YAA D    + L      KLQ+
Sbjct: 466 LTTTFEQVAGKGAKQKTFNQIEIETAAHYAAEDAHVTYRLFEVLDAKLQK 515


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 577 RLAAEGLMSVYE 588


>gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6]
 gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6]
          Length = 949

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 22/170 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET G  P    L  +  S  +     + +   ++ A         +  +E  
Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPVPDNREEALKIVNEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    GV+V+  +F T IA  + +    +HG+    +  L    I+I
Sbjct: 436 LKVGQNIKYDMIVLENY-GVQVKGALFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHI 493

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173
                   K Q+    +  DL  + + +YA  D      L+    ++L+ 
Sbjct: 494 DELIGPKGKNQK----NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKE 539


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 401 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 460 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 519 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 577 RLAAEGLMSVYE 588


>gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227]
          Length = 928

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +I     A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 331 VTILDEEILKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 510 LKMWPDLQK 518


>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 897

 Score = 63.9 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 64/196 (32%), Gaps = 37/196 (18%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +    D+ AE      D+   DTET  L      L  +     +G    I +      
Sbjct: 304 TTQTQLDDLIAEL--EKYDSFVFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLG 361

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P           L  +  D K+ K+ H  +FD  VL          V  T I + + ++
Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421

Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157
              +H +    KE LGI            K QQ+ D         Q+       YAA D 
Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471

Query: 158 VHLHALRLQFTEKLQR 173
                L   F   L++
Sbjct: 472 DITFRLFNHFKALLEQ 487


>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
          Length = 949

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 22/170 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
              +++DTET G  P    L  +  S  +     + +   ++ A         +  +E  
Sbjct: 376 SKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPVPDNREEALKIVNEFRPVFENENS 435

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INI 131
            K+    ++D+ VL    GV+V+  +F T IA  + +    +HG+    +  L    I+I
Sbjct: 436 LKVGQNIKYDMIVLENY-GVQVKGALFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHI 493

Query: 132 S-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173
                   K Q+    +  DL  + + +YA  D      L+    ++L+ 
Sbjct: 494 DELIGPKGKNQK----NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKE 539


>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
 gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
          Length = 940

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 22/176 (12%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLV 67
           + +D +A DTET  L     R+  V  S  D     + +A     AP          +L 
Sbjct: 360 KKMDWVAFDTETDSLDLFAGRIVGVSFSIEDNRAAYVPLAHNYPGAPAQLDRDTVLADLK 419

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
             L D  R K+    +FD  +L          +F T + S +  +   +H +     + L
Sbjct: 420 PWLEDASRTKVMQNAKFDSHMLANHGITLRGVLFDTMLESYVLDSTATRHDMDSLAAKYL 479

Query: 128 GINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
           G +        D     A  LS  ++       YAA D      L+     KL   
Sbjct: 480 GRS---TITFEDIAGKGAKALSFPEIHLEQAGPYAAEDADVTGQLQQCLWPKLSVE 532


>gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +   E  A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 510 LKMWPDLQK 518


>gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101]
 gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +   E  A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 510 LKMWPDLQK 518


>gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69]
 gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75]
 gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5'
           exonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +   E  A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 510 LKMWPDLQK 518


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
          Length = 979

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 386 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 444

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 445 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 503

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 504 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 561

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 562 RLAAEGLMSVYE 573


>gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
          Length = 897

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           T +    D+ AE      D+ A DTET  L      L  +     +G    I +      
Sbjct: 304 TTQTQLDDLIAEL--EKYDSFAFDTETDSLNAYEANLVGLSFCAKEGRAFYIPLQHRYLG 361

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P           L  +  D K+ K+ H  +FD  VL          V  T I + + ++
Sbjct: 362 VPQQLELGFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKS 421

Query: 113 YTNQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDV 157
              +H +    KE LGI            K QQ+ D         Q+       YAA D 
Sbjct: 422 SG-KHDMDSLSKEHLGIEPIAYTAIAGTGKQQQTLD---------QVDIEIVAKYAAEDA 471

Query: 158 VHLHALRLQFTEKLQR 173
                L   F   L++
Sbjct: 472 DITFRLFNHFKALLEQ 487


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 ATETGVLAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 929

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 18/173 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP            
Sbjct: 347 LKLAEVFAFDTETDGLDTLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVLALF 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  KI    +FD  V+     + +R + F T + S +  +   +H +    + 
Sbjct: 407 KPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
            L       ++ +    + L+  Q+       YAA D      L  +   KLQ
Sbjct: 466 YLSHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHLHQKLWGKLQ 518


>gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39]
 gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI39]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +   E  A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 510 LKMWPDLQK 518


>gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
 gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
          Length = 929

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 18/173 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP            
Sbjct: 347 LKQAEVFAFDTETDGLDTLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAQVLALF 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  KI    +FD  V+     + +R + F T + S +  +   +H +    + 
Sbjct: 407 KPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAFDTMLESYVLDSVAGRHDMDSLAER 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
            L       ++ +    + L+  Q+       YAA D      L      KLQ
Sbjct: 466 YLKHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHLHQTLWGKLQ 518


>gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024]
          Length = 881

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGILAFDTETTSLDPMQGELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|325269880|ref|ZP_08136490.1| hypothetical protein HMPREF9141_1700 [Prevotella multiformis DSM
           16608]
 gi|324987853|gb|EGC19826.1| hypothetical protein HMPREF9141_1700 [Prevotella multiformis DSM
           16608]
          Length = 224

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 11/163 (6%)

Query: 21  DAIAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           D I +DTET      R     ++ ++Q    +          G  +   +   L D    
Sbjct: 46  DIIGIDTET--RPTFRKGQHHKVALLQACDKEVCFLFRLNLLGMPDC--IKRFLEDTTVP 101

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+      D+ +L      +       +    +         L+     +    I+K +Q
Sbjct: 102 KVGLSLGDDMLMLHQRSAFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFHERITKREQ 159

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            S+W    LSD+Q  YA++D      L  +  E L+  G  +L
Sbjct: 160 LSNWENQILSDKQKLYASTDAWTCINLYERLHE-LKHTGDYEL 201


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
 gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
          Length = 935

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 30/184 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET G+  ++ +L  +  +        I +       P           L
Sbjct: 344 LKNAKLFAFDTETTGIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRAL 403

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTRTYTNQHG 118
             +L D  + K+  + +FD+ +L           G+ VR + F T + S +  +   +H 
Sbjct: 404 KPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHD 463

Query: 119 LKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           +    ++ L           D     A  L+ +Q+       YAA D      L     +
Sbjct: 464 MDSLAQKYLDHT---TVSFQDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQTLFD 520

Query: 170 KLQR 173
           KL  
Sbjct: 521 KLSA 524


>gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536]
 gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11]
 gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536]
 gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11]
 gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
 gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +   E  A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 510 LKMWPDLQK 518


>gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +   E  A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 510 LKMWPDLQK 518


>gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89]
 gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88]
 gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89]
 gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli S88]
 gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034]
 gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146]
 gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
 gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +   E  A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 510 LKMWPDLQK 518


>gi|17557121|ref|NP_499104.1| hypothetical protein ZK1098.3 [Caenorhabditis elegans]
 gi|732219|sp|P34603|YO63_CAEEL RecName: Full=Uncharacterized protein ZK1098.3
 gi|3881492|emb|CAA80141.1| C. elegans protein ZK1098.3, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 784

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 30/179 (16%)

Query: 22  AIAVDTETLGLMPR------RDRLCIVQLSPGD-----GTVDIIRIAAGQKNAPNLVG-M 69
            I  D+E     P         RL I+QL   D       V I  +A+       L   +
Sbjct: 446 YIGYDSEF---KPYHLIDVSTSRLAIIQLFFKDKAWLINCVAIDNLASRDDVWIRLYKGL 502

Query: 70  LVDEKREKIFHYGRFDIAVLF------YTFGVR-VRPVFCTK--------IASRLTRTYT 114
               K   +    R DI  +F        F +  ++ V C K        ++  +    T
Sbjct: 503 FESNKFSIVGFDIRQDIEAMFTVPSINKNFKIENIQNVICVKSLAENVNALSMDILNLST 562

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
               L      L+G+ + K++Q  +W    L   Q+ YA  D V +  +  +  E +++
Sbjct: 563 KTSKLSVLADHLVGLKMDKSEQCGNWQCRPLRRNQIIYAVMDAVAVFEVFQKIVEVVRK 621


>gi|46124885|ref|XP_386996.1| hypothetical protein FG06820.1 [Gibberella zeae PH-1]
          Length = 547

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 21/168 (12%)

Query: 21  DAIAVDTETLGLMPRR---DRL--CIVQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDE 73
             I  D E   L+  R    R+   ++Q++         +         AP    ++ DE
Sbjct: 186 KVIGFDLE--WLIRHRNTDPRVNVSLIQIASPSRVALFHVALYPKDDFVAPTFKKIMEDE 243

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN---------QHGLKDNLK 124
              K+    + D   L    G+  R V       +L +   +            L    +
Sbjct: 244 SVTKVGVCIKGDCTRLKNNLGIESRGVLELSHLFKLVKYSKSGELKRINKIMVNLAAQTQ 303

Query: 125 ELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           E+LG+ + K    +SS+W    LS++Q+ Y+ASD      L     ++
Sbjct: 304 EVLGLPLFKGNDVRSSNWML-PLSEQQISYSASDAYVGLQLYHVLEQE 350


>gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDANVTLQLHLKMWPDLQK 518


>gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1]
          Length = 978

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50]
          Length = 665

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
          Length = 978

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
          Length = 891

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 44/135 (32%), Gaps = 11/135 (8%)

Query: 8   EGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN- 65
           E D  A  A        +VD ET  L P    +  + LS  D     I +      AP  
Sbjct: 298 EADFRALLADLAGAGVFSVDLETTSLNPLEADIVGISLSFRDHEACYIPVGHAYDGAPAQ 357

Query: 66  ---------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
                    L  +L D    K+    ++D  VL     V       T +AS L     + 
Sbjct: 358 LDRTLVLEGLRPLLTDPAVRKVGQNLKYDYQVLRRHGIVMAGVWCDTMVASYLINPVRSG 417

Query: 117 HGLKDNLKELLGINI 131
           HGL     E L   +
Sbjct: 418 HGLDSLAVEHLDHRM 432


>gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206]
 gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
 gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +   E  A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 510 LKMWPDLQK 518


>gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94]
          Length = 978

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a]
 gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli ED1a]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +   E  A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 331 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 390

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 391 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 449

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 510 LKMWPDLQK 518


>gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 978

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
           polymerase, family A:5'-3' exonuclease:3'-5'
           exonuclease:Hel [Brucella melitensis biovar Abortus
           2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
          Length = 978

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|308172795|ref|YP_003919500.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605659|emb|CBI42030.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
          Length = 761

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 59/184 (32%), Gaps = 25/184 (13%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMPRRD-RLCI-VQLSPGDGTVDIIRIAAGQ- 60
           I   E       A    + IAVDTET G+    D  + + + L   D  V I  +     
Sbjct: 121 ITTEERFQALIDALNNEEIIAVDTETTGVDVYTDVIVGLSLTLPNADWHVYI-PVEHVDC 179

Query: 61  ------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR-- 111
                      L  +  DE   K+ H   FDIA+L    G  ++ V + T  A  L    
Sbjct: 180 EQLSRAYVLEGLAPVFNDESIGKVLHNAIFDIAMLRRH-GFDLKGVAWDTMTAMHLLNEN 238

Query: 112 ------TYTNQHGLKDNLKELLGINISKAQ----QSSDWSADDLSDEQLQYAASDVVHLH 161
                        LKD   + L            +++ +    L    L YAA D     
Sbjct: 239 ESDRALGGAGSFKLKDLAPKYLKTPADTFDALFGRNAQFKEVPLDIA-LVYAAKDTELTW 297

Query: 162 ALRL 165
            L  
Sbjct: 298 KLYE 301


>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
 gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
          Length = 937

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 24/176 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               D +A DTET  L      L  V  +  +G    + +A    +AP           L
Sbjct: 354 LTAADVVAFDTETDSLDYMTANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVLAQL 413

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  + K+    +FD+++L     + ++ + + T + S +  +   +H +      
Sbjct: 414 KPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKYDTMLESYVFNSVVGRHDMDSLALR 472

Query: 126 LL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
            L    I+  +           L+  Q+       YAA D      L     EK++
Sbjct: 473 YLEHKNISFEEVAGK---GKKQLTFNQIDLDVAGPYAAEDADITLRLHNLLNEKVE 525


>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
 gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
          Length = 918

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 68/172 (39%), Gaps = 18/172 (10%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
            + IA+DTET  L      L  +  +   G    + +A    +AP           L  +
Sbjct: 338 AELIAIDTETTSLNYMEAELVGLSFATEAGKAAYLPLAHDYLDAPLQIDKASALEKLRPI 397

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L  +  +K+    ++D+++L    G+ ++ + F T + S +  +  ++H +     + LG
Sbjct: 398 LEGDTPQKVGQNLKYDMSILANA-GISLKGIRFDTMLESYVFNSIASRHDMDGLALKYLG 456

Query: 129 INISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
                 ++ +   A  L+  Q+       YAA D      L      +L++ 
Sbjct: 457 HKNISFEEVAGKGAKQLTFNQVHLDIAGPYAAEDADITLRLHQHLWPRLEKE 508


>gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
 gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469]
 gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia fergusonii ATCC 35469]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
 gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 60/184 (32%), Gaps = 33/184 (17%)

Query: 20  VDAIAVDTET------------LGLMPRRDRLCIVQLS--PGDGTVDIIRIAAGQKNAP- 64
              IAVDTET            + L     R C + L+     GT D+    A  +  P 
Sbjct: 336 AGQIAVDTETDALSSTASGLVGISLATAPGRACYIPLAHVDPQGTGDMFDTGAAPEQIPM 395

Query: 65  -----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
                 L  +L D    KI    ++D+ VL    G+ V P   T + S +     + HG+
Sbjct: 396 DQALKVLKPLLEDPAVLKIGQNFKYDLGVLSRY-GIDVAPYDDTMLISYVMEAGLHGHGM 454

Query: 120 KDNLKELLGIN---------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
               +  LG             K Q + D     L    L YAA D      L       
Sbjct: 455 DALAELHLGHTCIPFKEICGTGKNQITFD--KVPLDKATL-YAAEDADITLRLWEILKPA 511

Query: 171 LQRL 174
           L   
Sbjct: 512 LVAK 515


>gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605]
 gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86]
 gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W]
 gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W]
 gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W]
 gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQITLEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
 gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
 gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972]
 gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972]
 gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972]
 gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012]
 gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A]
 gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638]
 gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A]
 gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22]
 gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019]
 gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171]
 gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11]
 gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1]
 gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989]
 gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952]
 gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9]
 gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B]
 gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088]
 gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736]
 gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
 gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I
 gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
 gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli]
 gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655]
 gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K12 substr.
           W3110]
 gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A]
 gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638]
 gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A]
 gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22]
 gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019]
 gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171]
 gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11]
 gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli 55989]
 gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI1]
 gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952]
 gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Escherichia coli BL21(DE3)]
 gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)]
 gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1]
 gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088]
 gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1]
 gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
 gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010]
 gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68]
 gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1]
 gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482]
 gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489]
 gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007]
 gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
 gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143]
 gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933]
 gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966]
 gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
 gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli]
 gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407]
 gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
 gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
 gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
 gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520]
 gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
 gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
 gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70]
 gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354]
 gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
 gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
          Length = 929

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 24/178 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            ++ +  A D ET  L      +  +  +   G    + +A    +AP           L
Sbjct: 346 LQHSELFAFDLETDSLDTLSANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDVLARL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             +L D + +K+    +FD  VL        G+R    F T + S    +   +H +   
Sbjct: 406 KPLLEDPQSQKVGQNLKFDRGVLKRYDIELLGIR----FDTMLESYALNSVAGRHDMDTL 461

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
               L       ++ +    + L+  Q+       YAA D      L L+   +L++ 
Sbjct: 462 ASRWLQHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKE 519


>gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
 gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82]
 gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|170095531|ref|XP_001878986.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646290|gb|EDR10536.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 250

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 31/188 (16%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPN---- 65
           +P  C  R +  +AVD E + L     ++ +VQ+ S     V ++ +      A +    
Sbjct: 24  LPDACNPRAM-TLAVDLEGIDLCRH-GKISLVQIMSSVSEVVWLVDVTTLGSQAFDHVDP 81

Query: 66  ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---- 117
               L  +L D   +K+F+  R D   L+  +GV +  V+  ++     R    +     
Sbjct: 82  YGRTLRMILEDTGIKKVFYDVRNDADALYNLYGVNLMGVYDLQLLELAVRHSLRRQTRLL 141

Query: 118 -GLKDNLKELL------------GINISKAQ---QSSDWSADDLSDEQLQYAASDVVHLH 161
            GL  ++K  L            G  + K +     S +    L    + Y A DV  L 
Sbjct: 142 NGLSKSIKSYLTPPVEWEPVKEAGSRLFKPEFGGSYSVFEERPLDPRIVAYCAQDVTLLF 201

Query: 162 ALRLQFTE 169
           AL      
Sbjct: 202 ALEETLRR 209


>gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
 gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
           [Shigella flexneri 2002017]
 gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671]
 gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71]
 gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|27370298|ref|NP_766445.1| exonuclease 3'-5' domain-containing protein 1 [Mus musculus]
 gi|81914299|sp|Q8CDF7|EXD1_MOUSE RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
           AltName: Full=Exonuclease 3'-5' domain-like-containing
           protein 1
 gi|26326111|dbj|BAC26799.1| unnamed protein product [Mus musculus]
 gi|111598629|gb|AAH92241.1| Exonuclease 3'-5' domain-like 1 [Mus musculus]
 gi|123232373|emb|CAM22019.1| Vexonuclease 3'-5' domain-like 1 [Mus musculus]
 gi|123858356|emb|CAM18069.1| Vexonuclease 3'-5' domain-like 1 [Mus musculus]
          Length = 570

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 172 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 229

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQSSD-- 139
           + +  VF T++A     S  T  +       L+++L   L +       + + Q+     
Sbjct: 230 IMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVAPRYLFFLEERQKRIQEN 289

Query: 140 ---WSADDLSDEQLQYAASDVVH 159
              W    L    L+  A +  +
Sbjct: 290 PEIWLTRPLPPSLLKILALETTY 312


>gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS]
 gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|148696007|gb|EDL27954.1| Vexonuclease 3'-5' domain-like 1 [Mus musculus]
 gi|187957716|gb|AAI50663.1| Exonuclease 3'-5' domain-like 1 [Mus musculus]
 gi|219519197|gb|AAI44751.1| Exdl1 protein [Mus musculus]
          Length = 570

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 172 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 229

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQSSD-- 139
           + +  VF T++A     S  T  +       L+++L   L +       + + Q+     
Sbjct: 230 IMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVAPRYLFFLEERQKRIQEN 289

Query: 140 ---WSADDLSDEQLQYAASDVVH 159
              W    L    L+  A +  +
Sbjct: 290 PEIWLTRPLPPSLLKILALETTY 312


>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
 gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
          Length = 924

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 77/209 (36%), Gaps = 30/209 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------- 65
           A++   IAVD ET  L     RL  V L+        I +     +  +           
Sbjct: 333 AKHARVIAVDVETDALSAVASRLVGVSLATAPNEACYIPLGHEGGDLADGGMKPDQIDES 392

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +L ++   K+    ++D+AV     GVRV P   T + S +     + HG+ 
Sbjct: 393 EALGRLKAILENDAILKVGQNFKYDLAVFQRY-GVRVAPYDDTMLISYVQAAGLHNHGMD 451

Query: 121 DNLKELLGIN-IS--------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +  +  LG   IS        K+Q+   +S  DL     +YAA D      L       L
Sbjct: 452 ELAERHLGHTCISFKEVCGTGKSQKR--FSEIDLKTA-TEYAAEDADITLRLWELLKAGL 508

Query: 172 QRLGRSDLATSCCNFLMD-RAELDLLGWE 199
              G S +  +    L     +++L G +
Sbjct: 509 AGKGLSTVYETLERPLPQVLTDMELAGVK 537


>gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
          Length = 928

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605]
 gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605]
          Length = 986

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 58/175 (33%), Gaps = 26/175 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------------LV 67
            +A DTET  L P R  L  + +  G+    +  I  G K + +              L 
Sbjct: 391 PVAFDTETTDLNPFRAELVGIGICWGEDLDALAYIPLGHKGSEDSIPEQLSLETVLTALA 450

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
             L      K     ++D  +L          V  T +A    R  + +HGL+   +   
Sbjct: 451 PWLASSNHPKTLQNAKYDRLILLRHGIALEGVVIDTLLA-DYLRDASAKHGLELMAEREF 509

Query: 128 GIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           G         + K Q  +D     L    L Y   DV     L L    +L+ +G
Sbjct: 510 GFQPTSFTDLVGKKQTFAD---VPLEPASL-YCGMDVHVTRRLALLLRHQLETMG 560


>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
 gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
          Length = 908

 Score = 63.5 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 19/201 (9%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +   + D+       +  D  A DTET  L      +  V  +   G    + +      
Sbjct: 311 VITEQADLDQWLKKLKDSDLFAFDTETTSLRYMDAEIVGVSFAVEPGKAAYVPLGHDYMG 370

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111
           AP           L  +L D K +K+    ++D  VL     +++  +   T + S +  
Sbjct: 371 APEQLDRDSVLEQLKPLLEDPKHKKVGQNLKYDKNVLANH-DIQLEGIAEDTMVESYVLN 429

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165
           +   +H +    +  L       +  +   A  L+  Q+       YAA D      L  
Sbjct: 430 SVGTRHDMDSLARTYLDEETITYESIAGKGAKQLTFNQIDLESAGPYAAEDADITLRLHQ 489

Query: 166 QFTEKLQRLGRSDLATSCCNF 186
               +L+  G+ +      + 
Sbjct: 490 TLAPRLKDTGKLESVYREIDL 510


>gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101]
          Length = 916

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 334 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 393

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 394 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 452

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 453 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 506


>gi|298713371|emb|CBJ33586.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 818

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 19/169 (11%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTE----TLG--LMPRRDRLCIVQLSPGDGTVDIIR 55
           T I +   ++   CA + +  + +D E      G    P    +C +QL+  DGT  +  
Sbjct: 167 TAIDIAVANLVGGCATQGM-VLGMDCEWEPAFNGSSERP----VCTLQLALPDGTSSLFH 221

Query: 56  IAAG------QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
           +  G           NL  +L D    K+    + D   L   + V  R +   +  +R 
Sbjct: 222 LQRGGRGITPSTFNTNLKRLLGDLAITKVGVAVKGDGKRLQRDYDVETRGMVDLRSYARA 281

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASD 156
                    L       LG  +SK    + S WS  +L+  Q++YA  D
Sbjct: 282 CWVDLPCRSLAGMTATALGKYLSKDAAGRFSHWSRPELTPNQIEYACLD 330


>gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299]
 gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299]
          Length = 928

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
 gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
          Length = 934

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 22/196 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVD 72
            A DTET  L  +  RL  +  +   G    + +     +AP           +  +L +
Sbjct: 356 FAFDTETDSLDTQEARLVGMSFAIEAGRAAYLPVGHDYLDAPAQLSLDEVIAVMKPILEN 415

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNLKELLGI 129
           EK  KI    ++D  VL     + ++ + F T + S +        +H +       L  
Sbjct: 416 EKIGKIGQNLKYDAEVLLNY-DIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRHLNH 474

Query: 130 NISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                ++ +      L+  Q+       YAA D      L      +L+   +       
Sbjct: 475 KTVSFEEIAGKGKKQLTFNQIPLEQAANYAAEDADVTLLLHQALYPQLESEPKLAHVFQN 534

Query: 183 -CCNFLMDRAELDLLG 197
                +     ++  G
Sbjct: 535 IEMPLVPVLVRMERKG 550


>gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
 gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
          Length = 911

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 18/180 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65
           A       + DTET  L      +  V  +   G    + +A     AP           
Sbjct: 327 ALTDAKTFSFDTETTSLNYMEAEIVGVSFAVEPGKAAYVPVAHDYMGAPEQLERDKVLAA 386

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLK 124
           L  +L D    KI    ++D  VL    GV++  +   T + S +  +  N+H +     
Sbjct: 387 LKPLLEDPAYRKIGQNLKYDAHVLANH-GVQLNGIAEDTMLESYVLNSTANRHDMDTLAS 445

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSD 178
           + LG      +  +   A  L+  Q+       YAA D      L      KL++ GR +
Sbjct: 446 KHLGRETIHFEDIAGKGAKQLTFNQISLEQAGPYAAEDADITLQLHHALNPKLKKEGRLE 505


>gi|71004700|ref|XP_757016.1| hypothetical protein UM00869.1 [Ustilago maydis 521]
 gi|46096710|gb|EAK81943.1| hypothetical protein UM00869.1 [Ustilago maydis 521]
          Length = 646

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 12/148 (8%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
               + +D E         R  +VQ+      + I   A   +  P L  +L D    K 
Sbjct: 210 GPGPMGLDLEWNYSRAGVHRTALVQICSSSLILIIHTSAMSHRIPPLLKHILQDPSIVKT 269

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR--------TYTNQHGLKDNLKELLGIN 130
               + D   L   + +  R V      S   +         +++   L+D  +  LG  
Sbjct: 270 GVAIKNDALKLQRDYAIDARNVVE---LSNFVKLAQPHRWAGHSHLISLRDLTRIYLGRK 326

Query: 131 ISKAQ-QSSDWSADDLSDEQLQYAASDV 157
           + K   + SDW    L  +Q++YAASD 
Sbjct: 327 LRKDSVRVSDWERYPLDAKQIEYAASDT 354


>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
 gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
          Length = 959

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 72/213 (33%), Gaps = 27/213 (12%)

Query: 3   TIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           TI  +  ++ A             DTET G     DR+  + L+        I       
Sbjct: 369 TIVRNAQELEAVLREVAACPEFCFDTETTGFDIFNDRIVGLSLAVRPYEAWYIPFNESNT 428

Query: 62  N--APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHG 118
              A  +  +  D K  KI    +FD+ VL    GV +R  ++ T I   L    + +H 
Sbjct: 429 AEYAALIRPLFADGKIAKIGQNIKFDLMVLAR-LGVEIRGRLYDTMILHYLLDPES-RHN 486

Query: 119 LKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +       L          I K        A  L+ + +      +YAA D      L+ 
Sbjct: 487 MDALAMRYLNYRPISITSLIGK-------GARQLTMDMISLERVAEYAAEDADVTLRLKQ 539

Query: 166 QFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
               K++ L  + L        +   AE+++ G
Sbjct: 540 VLWPKVEELDLAGLYLEIEEPMIAVLAEIEMAG 572


>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
 gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
          Length = 936

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 24/214 (11%)

Query: 2   TTIRVHEGDIPAE-----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           T  + H  D P             D    DTET  L P    L  +  S   G    +  
Sbjct: 339 TKHQYHLIDTPELREDLITYLSIQDEFCFDTETTDLEPTDAELVGLAFSYVAGEAYYVPF 398

Query: 57  AAGQKNA----PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTR 111
            A QK A         +L +E   KI    ++DI V+    GVRV+  +F T +A  L  
Sbjct: 399 PADQKEAQKIADEFKEVLENEDITKIGQNLKYDIQVMRNY-GVRVQGKMFDTMLAHYLLD 457

Query: 112 TYTNQHGLKDNLKELLG---INI-----SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
             T +H +    +  L    ++I      K  +  +     + ++ ++YA  D      L
Sbjct: 458 PET-RHNMDVMAENYLNYSPVSITDLIGKKGVKQGNMRDVPV-EDVVEYAGEDADITLQL 515

Query: 164 RLQFTEKLQRLGRSDL---ATSCCNFLMDRAELD 194
           +    ++++      L        ++++   E +
Sbjct: 516 KHILEKEIKENNLESLLHDVEEPLSYVLAEMEYE 549


>gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158]
          Length = 891

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 24/178 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            ++ +  A D ET  L      +  +  +   G    + +A    +AP           L
Sbjct: 308 LQHSELFAFDLETDSLDTLSANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDVLARL 367

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
             +L D + +K+    +FD  VL        G+R    F T + S    +   +H +   
Sbjct: 368 KPLLEDPQSQKVGQNLKFDRGVLKRYDIELLGIR----FDTMLESYALNSVAGRHDMDTL 423

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
               L       ++ +    + L+  Q+       YAA D      L L+   +L++ 
Sbjct: 424 ASRWLQHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKE 481


>gi|167625422|ref|YP_001675716.1| 3'-5' exonuclease [Shewanella halifaxensis HAW-EB4]
 gi|167355444|gb|ABZ78057.1| 3'-5' exonuclease [Shewanella halifaxensis HAW-EB4]
          Length = 297

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 25/177 (14%)

Query: 13  AECAARYVDAIAVDTETLGL----MPRRDRLCIVQLSPGDGTVDI-IRIAAGQKNAPNLV 67
           A         I  DTET           + + ++Q++         ++    +     L 
Sbjct: 105 AIADIEAQSWIGFDTETAATFEKGRRNTNPISLIQIATATHCYLFRMQAINIEPFKVALT 164

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL-------TRTYTNQHGLK 120
            ++ +E   KI    R DI  +           F   IA+ L             Q G +
Sbjct: 165 PVMSNEHLLKIGIGLRSDINGMKRD--------FDMSIAAMLDLNWLMNQLGAPKQLGTQ 216

Query: 121 DNLKELLGINISKAQ--QSSDWSA---DDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                +L + + K++    S+WS    + LS+ QLQYAA+D      +    T ++ 
Sbjct: 217 QAAATVLALKLPKSKKVTLSNWSKPLTEPLSELQLQYAAADTFVALDILHAVTAQVA 273


>gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 696

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 103 AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 161

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 162 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 220

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 221 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 278

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 279 RLAAEGLMSVYE 290


>gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327]
          Length = 884

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +   E  A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 287 VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 346

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 347 DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 405

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 406 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 465

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 466 LKMWPDLQK 474


>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 688

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 95  AAETGILAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 153

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 154 PLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 212

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 213 GMDPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 270

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 271 RLAAEGLMSVYE 282


>gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4]
 gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4]
          Length = 793

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 61/211 (28%), Gaps = 35/211 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---------------- 60
           A  V  +A DTET  L   +  L  + LS   G    I +A                   
Sbjct: 199 AYEVGYVAFDTETTSLNAMQAELVGISLSTSTGKACYIPLAHIDGEGDLLGGGALIEGQI 258

Query: 61  ---KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  ML D    KI    ++D  V+ +  GV V     T + S         +
Sbjct: 259 PLKDALAILKPMLEDPAVLKIAQNLKYDWLVMTHY-GVNVTSYDDTMLLSYTVDAGKGGN 317

Query: 118 GLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           G+ +  +  LG             K+  + D     L      YAA D      L     
Sbjct: 318 GMDELSERWLGHKPIPFKEVCGSGKSMITFD--KVPLDKA-TAYAAEDADVTLRLWQVLK 374

Query: 169 EKLQRLGRSDLATSCCN--FLMDRAELDLLG 197
            +L    R            +   A ++  G
Sbjct: 375 PRL-ASDRMATVYETLERPMVPVLARMEQRG 404


>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
 gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
          Length = 950

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 28/211 (13%)

Query: 8   EGDIPAECAARYV---DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           +GD+P +   + +    ++  DTET G+      L  +  S   G    +     Q+ A 
Sbjct: 360 QGDLPVKLLMQNLLNQTSVCFDTETTGIDALNAELVGMSFSFEKGKGFYVPFPEDQEEAQ 419

Query: 65  NLVG----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            L+        +E  EKI    ++D+ +L          +F T IA  L      +H + 
Sbjct: 420 TLIEKFRPFFENENIEKIGQNMKYDLKILSNYNMQVKGKLFDTMIAHYLINP-DMRHNMD 478

Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQF 167
              +  L          I K         + LS      ++  +YA  D      L+  F
Sbjct: 479 VLSETYLKYAPKSIETLIGKK------GKNQLSMRDVPLEDIKEYATEDADITFQLKEHF 532

Query: 168 TEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L+++G   L        +   A+++  G
Sbjct: 533 QPILEKVGTKKLFDEIEIPLVPVLADMEKEG 563


>gi|195626632|gb|ACG35146.1| Werner syndrome ATP-dependent helicase [Zea mays]
          Length = 303

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 8/153 (5%)

Query: 22  AIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           ++  D E     PRR     ++ ++QL        ++ IA      P L  +L D    K
Sbjct: 138 SLGFDLE-WRPFPRRGEPPCKVAVMQLCMEKTLCYVLHIAHSGV-PPILKTLLEDSSSIK 195

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135
           +      D   +F  + V V+P+      + +      +  L    + +    + K    
Sbjct: 196 VGICIDNDARKMFNDYDVCVQPLMDLSTLANVKLASPKRWSLASLTEMITCKELPKPSNI 255

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           +  +W AD LS +QLQYAA+D      L     
Sbjct: 256 RMGNWEADVLSKQQLQYAATDAYISWYLYEALQ 288


>gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
 gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
          Length = 923

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 18/172 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        + +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAQDAYYVPLAHTYENAPQQLNREQILAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F T +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDTMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVATHYAAEDAHVTYRLYEVLSNKLK 516


>gi|212721724|ref|NP_001131769.1| hypothetical protein LOC100193139 [Zea mays]
 gi|194692488|gb|ACF80328.1| unknown [Zea mays]
          Length = 303

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 8/153 (5%)

Query: 22  AIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           ++  D E     PRR     ++ ++QL        ++ IA      P L  +L D    K
Sbjct: 138 SLGFDLE-WRPFPRRGEPPCKVAVMQLCMEKTLCYVLHIAHSGV-PPILKTLLEDSSSIK 195

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135
           +      D   +   + V V+P+      + +      +  L    + +    + K    
Sbjct: 196 VGICIDNDARKMLNDYNVCVQPLMDLSTLANVKLASPKRWSLASLTEMITCKELPKPSNI 255

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           +  +W AD LS +QLQYAA+D      L     
Sbjct: 256 RMGNWEADVLSKQQLQYAATDAYISWYLYEALQ 288


>gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi]
 gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi]
          Length = 909

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 69/194 (35%), Gaps = 17/194 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------AGQKNAPNLVGM 69
            +  + I++DTET  L     +L  + +S  +     I I                   +
Sbjct: 337 LKQANYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIETKGKIYIEKHYIIQKFNNL 396

Query: 70  L-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
              + K   I    +FD  +L       + P F T IA+ L  T + +  L    ++ L 
Sbjct: 397 FKSNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYLM 453

Query: 129 INISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-C 183
               K +   Q +D +  ++S E    Y+  D      L   FTEKL+     +L     
Sbjct: 454 HKNIKYEDVIQKND-NFANISLEMATSYSCEDADITFRLFNIFTEKLKEDELYELMHEIE 512

Query: 184 CNFLMDRAELDLLG 197
             F     E++  G
Sbjct: 513 MPFNNVIIEMEENG 526


>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
 gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
          Length = 930

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 68/187 (36%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 347 LKASELFAFDTETDSLDYMVANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQL 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 407 KPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q++      YAA D      L  +    +++  +   
Sbjct: 466 FLQHSCISFEQIAGKGKNQLTFNQIELDEASPYAAEDADVTLRLHNRLFANIEQDEKLKT 525

Query: 180 ATSCCNF 186
                  
Sbjct: 526 VYEEIEM 532


>gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
 gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
          Length = 949

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 35/191 (18%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----AGQKNA---------- 63
           R    +AVDTET GL   +  L  + L+   G    I +A    AG  +           
Sbjct: 351 RERGWVAVDTETTGLDEMKADLVGISLAVEPGAACYIPLAHKAEAGSDDLFGSDTLAEGQ 410

Query: 64  -------PNLVGMLVDEKREKIFHYGRFDIAVLFYTF------GVRVRPVFCTKIASRLT 110
                    L  +L D    KI    ++D  +           G+ V P   T + S   
Sbjct: 411 MDFATALSMLKPVLEDPAILKIGQNMKYDAKIFRRQHGAGFEDGITVAPYDDTMLLSYAL 470

Query: 111 RTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
               + HG+    +  L  +       +   + +  +    ++D  + YAA D      L
Sbjct: 471 FAGQHGHGMDTLSERYLSHSPIPIKSLLGTGKSAITFDRVPIADA-VAYAAEDADITLRL 529

Query: 164 RLQFTEKLQRL 174
              F  +L + 
Sbjct: 530 WKLFKPQLHQQ 540


>gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36]
 gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36]
          Length = 931

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +  +  A DTET  L   +  L  +  +  +G    + +A    +AP          +L
Sbjct: 348 LQKAELFAFDTETTSLNYIQAELVGLSFAVAEGEAAYLPVAHDYIDAPEQLDRDHVLASL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D   +K+    ++D +VL    G+ +  + + T I S +  +   +H +     +
Sbjct: 408 KTLLEDSNAKKVGQNLKYDKSVLANY-GINLAGIAYDTMIESYVYNSIATRHDMDSLADK 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
            LG      ++ +      L+  Q++      YAA D      L      K++  
Sbjct: 467 YLGHKTISFEEIAGKGKKQLTFNQIELEQASAYAAEDADVTLRLHNVLWPKIEAE 521


>gi|115644574|ref|XP_798576.2| PREDICTED: similar to conserved hypothetical protein, partial
           [Strongylocentrotus purpuratus]
          Length = 288

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 22/161 (13%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--- 65
            +   +    + +D E          ++ ++ + Q++  +    +   A       +   
Sbjct: 130 DDWVEKPNAVVGIDMEWKPPFNR--TQKVKVAVCQIATHEKVYLLDMRALWVPETKDIVK 187

Query: 66  --LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCT-----KIASRLTRT 112
                +L  E   K+      D  +L  +F      +              +I   ++  
Sbjct: 188 TFFQRLLQSEDILKLGFGISGDYKMLSQSFLEVQEALKGEKRTVDINGLSKRILQMISAP 247

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
             +  GL D +    G N+ K  + SDW    LS  Q+ YA
Sbjct: 248 VNSSFGLTDLVHFCFGKNLDKRDRMSDWEKRPLSQAQMTYA 288


>gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905]
          Length = 884

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 302 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 361

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 362 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 420

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 421 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 474


>gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307]
 gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307]
          Length = 986

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 24/174 (13%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----------PNLVGM 69
             A+A+DTET  L P R +L  +    G+   D+  I  G   A            L   
Sbjct: 393 APAVAIDTETTDLNPFRAQLVGLGFCWGEADNDLAYIPIGHSGAEGQLPLAEVLEALAPW 452

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L    + K     ++D  VL    G+ +  V   T +A    R  + +H L++  +   G
Sbjct: 453 LASPTQRKCLQNAKYDRLVLLRH-GLELNGVAVDTLLA-DYLRDASARHNLEELAQRHYG 510

Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
                    + K Q  +D     + +   QY   DV   + L +   ++L++LG
Sbjct: 511 FRPTSFSDLVGKGQTFAD---VPI-EAAAQYCGMDVHLTYRLAIDLVQQLEQLG 560


>gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
 gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
          Length = 924

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D I+ DTET  L   R RL  + L+   G    I +      AP           L
Sbjct: 342 LQQADLISFDTETDALDAMRARLVGISLAVEPGKAAYIPVGHDYPGAPPQLPMQQVLDAL 401

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  ++K+  +G++D+ VL    GV V+     T + S +  +   +H +      
Sbjct: 402 RPVLQDPAKKKLGQHGKYDLHVLRRH-GVEVQGYHDDTMLESFVLNSTATRHDMDSLALR 460

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            LG N  K +  +   A  +   Q+      +YAA D      L      +L   
Sbjct: 461 YLGYNTIKFEDVAGKGAKQIPFSQVGIDEASRYAAEDADITLRLHRALQPQLLAE 515


>gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Shigella flexneri 2930-71]
          Length = 884

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 302 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 361

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 362 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 420

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 421 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 474


>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1052

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 67/219 (30%), Gaps = 47/219 (21%)

Query: 20  VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57
              IAVDTET  L     +  +  V L+   G    I +A                    
Sbjct: 451 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGESGAGAD 508

Query: 58  ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
                            L  +L D    K+    ++D++VL + +G+ V P   T + S 
Sbjct: 509 ASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVL-HRYGIDVTPFDDTMLISY 567

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVH 159
           +       HG+ +  +  LG         +D +              D+   YAA D   
Sbjct: 568 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDRVAIDKATAYAAEDADV 624

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L      +L    R  +  +     +   A ++  G
Sbjct: 625 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 663


>gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4]
 gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1047

 Score = 63.1 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 67/219 (30%), Gaps = 47/219 (21%)

Query: 20  VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57
              IAVDTET  L     +  +  V L+   G    I +A                    
Sbjct: 446 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGESGAGAD 503

Query: 58  ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
                            L  +L D    K+    ++D++VL + +G+ V P   T + S 
Sbjct: 504 ASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVL-HRYGIDVTPFDDTMLISY 562

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVH 159
           +       HG+ +  +  LG         +D +              D+   YAA D   
Sbjct: 563 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDRVAIDKATAYAAEDADV 619

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L      +L    R  +  +     +   A ++  G
Sbjct: 620 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 658


>gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock]
          Length = 595

 Score = 63.1 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)

Query: 3   TIRVHE--GDIP--AECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRI 56
           TI V E   D+    +    +++ +AVDTET GL    D     +VQ    D    ++ +
Sbjct: 14  TINVVETPEDLAGFRDFIRAHLNCLAVDTETTGLDIYSDTFECRLVQFGTQDE-AWVVPV 72

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLTRT 112
             G     + V + +   R+ +     +D+ VL   FG+ +  ++     T+I ++L   
Sbjct: 73  ELGDVFIED-VRIAIGALRKVVLQNASYDLQVLDQCFGIEMEDLWPRVLDTQILAKLVDP 131

Query: 113 YT-NQHGLKDNLKELLGINISKAQ 135
                 G   +L+EL+   ISK Q
Sbjct: 132 RPFEAGGFGHSLEELIAEFISKEQ 155


>gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v]
          Length = 605

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 20/189 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + +   E  A+       A DTET  L      L  +  +   G    I +A    
Sbjct: 8   VTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYL 67

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP+          L  +L DEK  K+    ++D  +L    G+ +R + F T + S + 
Sbjct: 68  DAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYIL 126

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 127 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 186

Query: 165 LQFTEKLQR 173
           L+    LQ+
Sbjct: 187 LKMWPDLQK 195


>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 930

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 30/181 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIV----QLSPGDGTV--DIIRIAAGQKNAP------ 64
            ++  A + DTET GL        +V     ++ G+  V    + +A    +AP      
Sbjct: 344 LKHAPAFSFDTETDGLDTLTAN--LVGMSFAIAAGESEVEAAYLPLAHDYLDAPQQLDLH 401

Query: 65  ----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +L D    KI    +FD  VL     V    VF T + S +  +   +H + 
Sbjct: 402 EVLTALKPLLEDANLPKIGQNLKFDRGVLARYDVVLEGIVFDTMLESYVLNSVAGRHDMD 461

Query: 121 DNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171
              +  L     K     D        L+  Q+      +YAA D      L      +L
Sbjct: 462 SLAERHLSY---KTTTFEDIAGKGKKQLTFNQIPLEEAAKYAAEDADVTLRLHQAMYPQL 518

Query: 172 Q 172
            
Sbjct: 519 A 519


>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
 gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
          Length = 1047

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 68/219 (31%), Gaps = 47/219 (21%)

Query: 20  VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57
              IAVDTET  L     +  +  V L+   G    I +A                    
Sbjct: 446 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGESGAGAD 503

Query: 58  ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
                            L  +L D    K+    ++D++VL + +G+ VRP   T + S 
Sbjct: 504 ASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVL-HRYGIDVRPFDDTMLISY 562

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVH 159
           +       HG+ +  +  LG         +D +              D+   YAA D   
Sbjct: 563 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDRVAIDKATAYAAEDADV 619

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L      +L    R  +  +     +   A ++  G
Sbjct: 620 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 658


>gi|317502960|ref|ZP_07961050.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665926|gb|EFV05503.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 223

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 15/173 (8%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           T I  ++ D   +      D + VDTET  +     + ++ ++Q++  D          G
Sbjct: 28  TIINENDADKAVDYLL-SCDILGVDTETRPMFRKGEQHKVALLQVASRDTCFLFRLNDIG 86

Query: 60  QKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTN 115
               P+++ +L D    KI   +H    D+  L              + I   +      
Sbjct: 87  IP--PSVIRLLEDCTVPKIGLSWHD---DLLSLHRRVEFNPGYFVDLQDIVKEI---GIK 138

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
              L+     +    ISK Q+ ++W AD LSD+Q  YAA+D      L  +  
Sbjct: 139 DLSLQKLYANIFHQKISKRQRLTNWEADVLSDKQKLYAATDAWACIKLYEEIK 191


>gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
 gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
          Length = 945

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 16/183 (8%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85
           DTET GL P  D L  V           + ++ G  +   +  +L     EKI H+ +FD
Sbjct: 383 DTETTGLNPLMDNLLGVSFCAEPHKAWYMPVS-GPADLEAVRPLLEGPA-EKIGHHLKFD 440

Query: 86  IAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWS 141
           + VL    G+ V+ P F T +A  L      +HG+    + LL    I + K   +    
Sbjct: 441 LEVL-RANGIHVKGPFFDTLLAHALI-APGMKHGMDVLAENLLQYSTIKL-KDIAAPGAK 497

Query: 142 ADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELD 194
             +L       +   +Y+A D      L      +++  G   L  +     L   A+++
Sbjct: 498 KRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVKESGMEKLFRTVELPLLPVLADME 557

Query: 195 LLG 197
             G
Sbjct: 558 FSG 560


>gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102]
 gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102]
          Length = 981

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 59/176 (33%), Gaps = 26/176 (14%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ----KNAP----------NL 66
             +A+DTET  L P +  L  + +  G+    +  I  G      + P           L
Sbjct: 385 SPVALDTETTDLNPFKAELVGIGVCWGEELDALAYIPLGHNGSADSQPVQLPLETVVTAL 444

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
              L  E   K     +FD  +L          V  T +A    R    +HGL+   +  
Sbjct: 445 APWLGSEDHPKALQNAKFDRLILMRHGLALDGVVIDTLLA-DYLRDAAAKHGLELMAERE 503

Query: 127 LGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            G         + K Q  +D     L +   QY A DV     L L    +L  +G
Sbjct: 504 FGFQPTAYSDLVGKKQTFAD---VPL-EAASQYCAMDVHVTRRLALLLRNQLAAMG 555


>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
 gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
          Length = 930

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 347 LKASELFAFDTETDSLDYMVANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQL 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 407 KPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  +    +++  +   
Sbjct: 466 FLQHSCISFEQIAGKGKNQLTFNQIDLDEASPYAAEDADVTLRLHNRLFANIEQDEKLKT 525

Query: 180 ATSCCNF 186
                  
Sbjct: 526 VYEEIEM 532


>gi|321445960|gb|EFX60794.1| hypothetical protein DAPPUDRAFT_341412 [Daphnia pulex]
          Length = 292

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 37/175 (21%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI- 78
           V  +  D E   +      + ++QL+   G   ++R+        +L  +L + K  K+ 
Sbjct: 85  VPILGFDCEWSNVDGNTQPIALIQLASHQGVCSLVRVCCLSTLPESLKNILTNPKILKVE 144

Query: 79  ---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------------GLK 120
              +     D + L    G+            +    Y  +H               GL 
Sbjct: 145 VVTW----EDASKLKRDLGM------------QFCGGYYVRHLIFRHPKRESLLSKSGLL 188

Query: 121 DNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              ++LLG  ++K  + + SDW A++LS  Q++YAA D +   A+ L+   + + 
Sbjct: 189 GLSEQLLGTVLNKHFSVRCSDWEAENLSTIQVKYAAQDAIASIAICLKLVAETRA 243


>gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1]
 gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1]
          Length = 1047

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 68/219 (31%), Gaps = 47/219 (21%)

Query: 20  VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57
              IAVDTET  L     +  +  V L+   G    I +A                    
Sbjct: 446 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGESGAGAD 503

Query: 58  ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
                            L  +L D    K+    ++D++VL + +G+ VRP   T + S 
Sbjct: 504 ASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVL-HRYGIDVRPFDDTMLISY 562

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVH 159
           +       HG+ +  +  LG         +D +              D+   YAA D   
Sbjct: 563 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDRVAIDKATAYAAEDADV 619

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L      +L    R  +  +     +   A ++  G
Sbjct: 620 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 658


>gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026]
 gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
 gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli UMN026]
 gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
          Length = 928

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L +EK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLENEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5]
 gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5]
          Length = 928

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L +EK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLENEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|308501811|ref|XP_003113090.1| hypothetical protein CRE_25297 [Caenorhabditis remanei]
 gi|308265391|gb|EFP09344.1| hypothetical protein CRE_25297 [Caenorhabditis remanei]
          Length = 793

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 25/176 (14%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN------LVGMLVDEKREKIFHYGRFDIAVLFY 91
           R+  +QL   +    +  +   + +            +   +K   I    + D+  LF 
Sbjct: 468 RMATIQLFFNEKVFLVDCVILEKIDISEGMWKKFFESLFHSKKLTVIGFDMKNDMEALFT 527

Query: 92  TFGVR-------VRPVFCTK----IA----SRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
              +R       V+   C K    I     + +         L   ++ELL + + K +Q
Sbjct: 528 VRPIRDDFRQEDVKNFICVKRFVEILNEYDASILSLTKKSCRLITLVEELLNLTMDKTEQ 587

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           + +W    L   Q+ YA+ D V +  L  +  E +++  +        + L+D + 
Sbjct: 588 TGNWQCRPLRKNQIVYASLDAVIVLDLFRKIFEIVKQYEK----QVEIDKLLDESR 639


>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
 gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
          Length = 930

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 347 LKASELFAFDTETDSLDYMVANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVLAQL 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 407 KPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  +    +++  +   
Sbjct: 466 FLQHSCISFEQIAGKGKNQLTFNQIDLDEASPYAAEDADVTLRLHNRLFANIEQDDKLKT 525

Query: 180 ATSCCNF 186
                  
Sbjct: 526 VYEEIEM 532


>gi|311977815|ref|YP_003986935.1| putative 3'-5' exonuclease [Acanthamoeba polyphaga mimivirus]
 gi|82050848|sp|Q5UQM4|YR431_MIMIV RecName: Full=Putative 3'-5' exonuclease R431
 gi|55417050|gb|AAV50700.1| unknown [Acanthamoeba polyphaga mimivirus]
 gi|308204825|gb|ADO18626.1| putative 3'-5' exonuclease [Acanthamoeba polyphaga mimivirus]
          Length = 399

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 17/166 (10%)

Query: 19  YVDAIAVDTETL-GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
             + I +DTETL       +++ I+QLS     + II++        NL  +  DE   K
Sbjct: 133 KQEIIGLDTETLISGKS--EKISIIQLSTSKHNI-IIQVNQMNTLPQNLNKVFFDESIIK 189

Query: 78  IFHYGRFDIAVLFYTFGVR--VRPVFC-------TKIASRLTRTYTNQHGLKDNLKELLG 128
           +      D   L   F     ++           T     ++       GLK     +L 
Sbjct: 190 VGVAIDIDAKKLLQYFPTINQIKKTLDLSDLFKQTNFTKHISINPKESIGLKILAAHVLD 249

Query: 129 INI-SKAQQ---SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           + I +K       S+W+   L+ +Q++YA +D      +  +    
Sbjct: 250 LYIENKGDSEIKKSNWNNPVLTSDQVKYAITDSYLSLMIYNELQLM 295


>gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
          Length = 897

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 62/194 (31%), Gaps = 36/194 (18%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  +    A     D+ A DTET  L      L  +     +G    I +       P
Sbjct: 304 TTQSQLDDLIAELEKSDSFAFDTETDSLNTYEANLVGLSFCAKEGRAFYIPLQHRYLGVP 363

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
                      L  +  D K+ K+ H  +FD  VL          V  T I + + ++  
Sbjct: 364 QQLELGFVLDKLKPLFADVKKAKVAHNFKFDEKVLSKYAIEINGKVDDTMIMAYVLKSSG 423

Query: 115 NQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQ------YAASDVVH 159
            +H +    KE LGI            K QQ+ D         Q+       YAA D   
Sbjct: 424 -KHDMDSLSKEHLGIEPIAYTAIAGTGKHQQTLD---------QIDIEIVAKYAAEDADI 473

Query: 160 LHALRLQFTEKLQR 173
              L   F   L++
Sbjct: 474 TFRLFNHFKALLEQ 487


>gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120]
          Length = 810

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 228 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 287

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 288 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 346

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 347 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDSDVTLQLHLKMWPDLQK 400


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 401 AAETGVLAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 459

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 460 PLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 518

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 519 GMNPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 576

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 577 RLAAEGLMSVYE 588


>gi|115930137|ref|XP_001180943.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 336

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 22/161 (13%)

Query: 13  AECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--- 65
            +   +    + +D E          ++ ++ + Q++  +    +   A       +   
Sbjct: 178 DDWVEKPNAVVGIDMEWKPPFNR--TQKVKVAVCQIATHEKVYLLDMRALWVPETKDIVK 235

Query: 66  --LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCT-----KIASRLTRT 112
                +L  E   K+      D  +L  +F      +              +I   ++  
Sbjct: 236 TFFQRLLQSEDILKLGFGISGDYKMLSQSFLEVQEALKGEKRTVDINGLSKRILQMISAP 295

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
             +  GL D +    G N+ K  + SDW    LS  Q+ YA
Sbjct: 296 VNSSFGLTDLVHFCFGKNLDKRDRMSDWEKRPLSQAQMTYA 336


>gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
           Polymerase I Complexed With DTMP
 gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
           Polymerase I Complexed With Deoxynucleoside Triphosphate
           And Pyrophosphate
          Length = 605

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 23  LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 83  KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 142 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195


>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 1047

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 70/219 (31%), Gaps = 47/219 (21%)

Query: 20  VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57
              IAVDTET  L     +  +  V L+   G    I +A                    
Sbjct: 446 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGESGAGAD 503

Query: 58  ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
                            L  +L D    K+    ++D++VL + +G+ VRP   T + S 
Sbjct: 504 ASDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVL-HRYGIDVRPFDDTMLISY 562

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD---WSADDLS------DEQLQYAASDVVH 159
           +       HG+ +  +  LG         +D      + ++      D+   YAA D   
Sbjct: 563 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDHVAIDKATAYAAEDADV 619

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L      +L    R  +  +     +   A ++  G
Sbjct: 620 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 658


>gi|145352247|ref|XP_001420464.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580698|gb|ABO98757.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 389

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 22/168 (13%)

Query: 38  RLCIVQLSPGDGTVD--IIRIAAGQK--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
           +  +VQ++  +  +   ++ +A                D  R K     R D   L   +
Sbjct: 60  KTSLVQIAVANEDLSEKLVVLARIHTAGLTRRFKRWTRDGARGKTGFNVRGDARKLVRDY 119

Query: 94  GVRVRPVFCTKIAS--RLTRTYT--NQHGLKDNLKELLGINISKAQQS-SDWSADDLSDE 148
           G+    V    + +  R            L    + +LG  + K +   S+W  ++L++ 
Sbjct: 120 GLEPSRVIELSVLAKERFEGGCPSAPSWSLARLCEHVLGKTLPKDKTRMSNWEREELNES 179

Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS------CCNFLMDR 190
           Q++YAA D      +     ++       D+  S       C+ L + 
Sbjct: 180 QIKYAAMDAWASLLVYRALMKR-------DVVESFGGEPYECDPLPEP 220


>gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
           Manganese
 gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
           Only
 gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
           Manganese
 gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
 gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
           And Europium (Iii) Ion
 gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Short Dna Fragment Carrying 2'-0-
           Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
 gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna Tetramer Carrying
           2'-O-(3-Aminopropyl)- Rna Modification
           5'-D(Tt)-Ap(U)-D(T)-3'
 gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431]
 gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G]
 gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180]
 gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357]
 gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74]
          Length = 605

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 23  LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 83  KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 142 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195


>gi|157133258|ref|XP_001656204.1| hypothetical protein AaeL_AAEL012676 [Aedes aegypti]
 gi|108870909|gb|EAT35134.1| conserved hypothetical protein [Aedes aegypti]
          Length = 200

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 11/159 (6%)

Query: 21  DAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +  D E     ++G      ++ ++QL+   G   ++++         L  +L +++ 
Sbjct: 44  PVLGFDCEWWCTSSMGNNR---KVALLQLASAGGLCILVQMTRLHSIPQELSDLLHNDRI 100

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+      D   L   +G+ +R     +  ++        +G+K   K +LG  + K +
Sbjct: 101 LKVGIGPLADGIKLHQDYGLALRGTMDLQTLAQRLDVPVP-YGMKALAKSVLGFEMDKKK 159

Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               S+W    L+  Q+ YA+ D +    +   F +++Q
Sbjct: 160 NVILSNWERPLLTKRQIDYASKDAIVGLEIFRAFNQRIQ 198


>gi|333014001|gb|EGK33362.1| DNA polymerase I domain protein [Shigella flexneri K-227]
          Length = 605

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 23  LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 83  KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 142 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195


>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
 gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
          Length = 931

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 348 LKAADVFAFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLAQL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL     + ++ +   T +AS +  +   +H +      
Sbjct: 408 KPILEDDTQAKVGQNLKYDASVLARY-NIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +      L+  Q++      YAA D      L  +    +++  +   
Sbjct: 467 FLQHSCISFEQIAGKGKKQLTFNQIELDQASPYAAEDADVTLRLHNRLMANIEKDEQLKA 526

Query: 180 ATSCCNF 186
                  
Sbjct: 527 IYEEIEV 533


>gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167]
          Length = 928

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIELGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|222628291|gb|EEE60423.1| hypothetical protein OsJ_13625 [Oryza sativa Japonica Group]
          Length = 290

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 12/161 (7%)

Query: 17  ARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A    ++  D E     PRR     ++ ++QL        ++ I       P L  +L D
Sbjct: 125 ASGQVSLGFDLE-WRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSGV-PPVLKSLLED 182

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131
               K+      D   +F  + V V+P+   + +A+        +  L    + +    +
Sbjct: 183 SSSVKVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCREL 242

Query: 132 SKAQ--QSSDWSADDLSDEQLQYAASDV---VHLHALRLQF 167
            K    +  +W A  LS +QLQYAA+D     HL+ +    
Sbjct: 243 PKPSNIRMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQSL 283


>gi|115456978|ref|NP_001052089.1| Os04g0129200 [Oryza sativa Japonica Group]
 gi|38346519|emb|CAE03814.2| OSJNBa0027H09.14 [Oryza sativa Japonica Group]
 gi|113563660|dbj|BAF14003.1| Os04g0129200 [Oryza sativa Japonica Group]
 gi|116317897|emb|CAH65924.1| OSIGBa0131J24.2 [Oryza sativa Indica Group]
          Length = 298

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 12/161 (7%)

Query: 17  ARYVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           A    ++  D E     PRR     ++ ++QL        ++ I       P L  +L D
Sbjct: 125 ASGQVSLGFDLE-WRPFPRRGDPPCKVAVMQLCMERTRCYVMHIIHSGV-PPVLKSLLED 182

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI 131
               K+      D   +F  + V V+P+   + +A+        +  L    + +    +
Sbjct: 183 SSSVKVGICIDNDARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCREL 242

Query: 132 SKAQ--QSSDWSADDLSDEQLQYAASDV---VHLHALRLQF 167
            K    +  +W A  LS +QLQYAA+D     HL+ +    
Sbjct: 243 PKPSNIRMGNWEAYVLSKQQLQYAATDAYISWHLYEVLQSL 283


>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 934

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L P +  L  + ++   G    +        AP           L
Sbjct: 352 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQALAQL 411

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 412 APLLTDPAVRKLGQHGKYDLHVMRRHGVELAGYAEDTLLESFVLNSGSARHDMDSLAKRY 471

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           LG +  K +      A  +   Q+      +YAA D      L      +L   
Sbjct: 472 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLTSE 525


>gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T]
 gi|332997589|gb|EGK17204.1| DNA polymerase I domain protein [Shigella flexneri VA-6]
          Length = 605

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 23  LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 83  KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 142 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195


>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
          Length = 920

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 16/169 (9%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGML 70
              A DTET  L  R  ++    ++        + +A   + AP           +  +L
Sbjct: 346 KRFAFDTETTSLDYRIAQIVGFSVAFDAQDAYYVPLAHDYEGAPEQLNREVILAQIKPIL 405

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            DE  +KI H+ ++D  VL           F T +AS +  +   +HG+ D  +  L   
Sbjct: 406 EDESVKKIGHHLKYDAHVLENHGIHLAGWYFDTMLASYVLYSVATRHGMDDVARLYLSHL 465

Query: 131 ISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            +  +Q +   A   +  Q+       YAA D    + L    + KLQ 
Sbjct: 466 TTTYEQVAGRGAKQKTFNQIPLETAAHYAAEDAHVTYRLYEVLSSKLQA 514


>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
 gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
          Length = 928

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 79/217 (36%), Gaps = 22/217 (10%)

Query: 4   IRVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + D       R       A DTET  L      L  +  +   G    + +A    
Sbjct: 331 VTILDEDTLKAWITRLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYVPVAHDYL 390

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP           L  +L DEK  K+    ++D  +L     + +R + F T + S + 
Sbjct: 391 DAPEQISRERVLELLKPLLEDEKALKVGQNLKYDRGILANY-DIELRGIAFDTMLESYIL 449

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +    +  L       ++ +    + L+  Q+      +YAA D      L 
Sbjct: 450 NSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLH 509

Query: 165 LQFTEKLQR-LGRSDLATS-CCNFLMDRAELDLLGWE 199
           L+   +LQ+  G  ++  +     +   + ++  G +
Sbjct: 510 LKMWPELQKHKGPLNVFENIEMPLVPVISRIERNGVK 546


>gi|301100864|ref|XP_002899521.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262103829|gb|EEY61881.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1101

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 42   VQLSPGDGTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVR---- 96
            +Q++  D       +     +   L   +   +   KI      DI  L ++F       
Sbjct: 943  LQVACDDYVFIFDFMEMAIGDLEELFEHLFTSDTIVKIGFAINGDIKRLRWSFPEVKCFD 1002

Query: 97   -VRPV----FCTKIAS--------------------RLTRTYTNQHGLKDNLKELLGINI 131
                V    F T +A+                    +L R    Q GL   +K+ L + +
Sbjct: 1003 TFVNVLDFSFDTFVATTHLADGTIIPTQSDDTSSLDKLQRRRRRQKGLSTYIKQALELPL 1062

Query: 132  SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            SK QQ SDW    L+ +Q+ YAA D   L  L+     K
Sbjct: 1063 SKLQQKSDWERRPLTTQQVGYAALDAYCLLMLQDAVASK 1101


>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
 gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
          Length = 931

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 348 LKAAELFAFDTETDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ + + T +AS +  +   +H +      
Sbjct: 408 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q++      YAA D      L  +    +++  +   
Sbjct: 467 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKS 526

Query: 180 ATSCCNF 186
                  
Sbjct: 527 VYEEIEM 533


>gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
          Length = 930

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 347 LKAAELFAFDTETDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ + + T +AS +  +   +H +      
Sbjct: 407 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALR 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q++      YAA D      L  +    +++  +   
Sbjct: 466 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKS 525

Query: 180 ATSCCNF 186
                  
Sbjct: 526 VYEEIEM 532


>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
 gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
          Length = 931

 Score = 62.7 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 348 LKAAELFAFDTETDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ + + T +AS +  +   +H +      
Sbjct: 408 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q++      YAA D      L  +    +++  +   
Sbjct: 467 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKS 526

Query: 180 ATSCCNF 186
                  
Sbjct: 527 VYEEIEM 533


>gi|198277310|ref|ZP_03209841.1| hypothetical protein BACPLE_03522 [Bacteroides plebeius DSM 17135]
 gi|198269808|gb|EDY94078.1| hypothetical protein BACPLE_03522 [Bacteroides plebeius DSM 17135]
          Length = 213

 Score = 62.3 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 14/167 (8%)

Query: 23  IAVDTETLGLMPRR----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + VDTET      R    +++ ++Q+S  D               P+ +   +     KI
Sbjct: 47  VGVDTET--RPSFRKGAVNKVALLQVSTYDTCFL---FRLNHLGLPDFLEEFLQNDVLKI 101

Query: 79  FHYGRFDIAVLFYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
               + D A+L        R       ++   +      +  L+     L    ISK+Q+
Sbjct: 102 GLSLKDDFAMLRRRNQKDPRMGNW--VELQDYVASFGIEEKSLQKIYALLFQEKISKSQR 159

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            S+W AD L++ Q  YAA+D      +     E+L+  G+  +  + 
Sbjct: 160 LSNWEADTLTEAQQLYAATDAWACVRIYQYL-EELRLSGKYRVIRTE 205


>gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13]
 gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score = 62.3 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 385 AAETGVLAFDTETTSLDPMQAELVGFSL-ALAPGKAAYVPLQHKSGAGDLLGGGMVENQI 443

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 444 PLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH-GINAVSFDDTMLISYVLDAGTGSH 502

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 503 GMNPLSERWLGHTPIAYKDVAGS--GKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 560

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 561 RLAAEGLMSVYE 572


>gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168]
 gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168]
          Length = 928

 Score = 62.3 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNITANLVGLSFAVEPGVAAYVPVAHDYLDAPDQIARDRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVSKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
 gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
          Length = 931

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 348 LKASELFAFDTETDSLDYMVANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDREWVLAQL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 408 KPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  +    +++  + + 
Sbjct: 467 FLQHSCISFEQLAGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNA 526

Query: 180 ATSCCNF 186
                  
Sbjct: 527 IYQEIEV 533


>gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1]
 gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter sp. ADP1]
          Length = 920

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 16/171 (9%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +     A+DTET  L  R   +    ++        + +     NAP           L 
Sbjct: 343 QSEKRFAIDTETTSLDYRVAEMVGFSVAFDAQDAYYVPLTHDYDNAPEQLNREQILAQLK 402

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L DE   KI H+ ++D  +            F T +AS +  +   +HG+ D  +  L
Sbjct: 403 PILEDETVHKIGHHLKYDAHIFANHSVELKGWYFDTMLASYVINSVATRHGMDDVARVYL 462

Query: 128 GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
               +  +Q +   A   +  Q++      YAA D    + L     +KL+
Sbjct: 463 SHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLAQKLK 513


>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
 gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
          Length = 957

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 374 LKASELFAFDTETDSLDYMVANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQL 433

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 434 KPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 492

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  +    +++  + + 
Sbjct: 493 FLQHSCISFEQLAGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNA 552

Query: 180 ATSCCNF 186
                  
Sbjct: 553 IYQEIEV 559


>gi|270008688|gb|EFA05136.1| hypothetical protein TcasGA2_TC015251 [Tribolium castaneum]
          Length = 317

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 39/170 (22%), Gaps = 59/170 (34%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +    + VD E       +   C+VQ+S  D    I  IA            L DE  
Sbjct: 144 DLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIA------------LKDE-- 188

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
               H    D    ++                                         K  
Sbjct: 189 ---LHALNED----YHVAK-------------------------------------DKTM 204

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           Q  D+    L  +   YA  D  +L     +   +L            CN
Sbjct: 205 QRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCN 254


>gi|307108694|gb|EFN56933.1| hypothetical protein CHLNCDRAFT_143460 [Chlorella variabilis]
          Length = 328

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 27/178 (15%)

Query: 12  PAECAAR---YVDAIAVDTETLGL------MPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           PA    R       IA+D E             +  + +VQL+  D  V +     G   
Sbjct: 144 PALMLLRDSMPTPYIAIDLEWPSTDVPAYSHSFQG-VALVQLASADTCVLVRTCLLGFP- 201

Query: 63  APNLVGMLVDEKREKI-FHYGRFDIAVLFYTFG---VRVRPVF-CTKIASRLTRTYTNQH 117
              L   L D     I  H+G  D   +  +FG         F      S   +    + 
Sbjct: 202 -RELSNFLRDPSICFIGMHWGTQDADKMHDSFGWHHCDFHGGFVDAGTRSMARQAGYPRP 260

Query: 118 GLKDNLKELLGINISKAQQS----------SDWSADDLSDEQLQYAASDVVHLHALRL 165
           GLK   + L  I++ K++++          S+W+A  LS  Q++YAA D +    +  
Sbjct: 261 GLKGMAESLFAIDLPKSKKARTYFWKRVTLSNWAAASLSGSQVRYAALDALFTFHIYE 318


>gi|262380470|ref|ZP_06073624.1| 3'-5' exonuclease [Acinetobacter radioresistens SH164]
 gi|262297916|gb|EEY85831.1| 3'-5' exonuclease [Acinetobacter radioresistens SH164]
          Length = 218

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+  +  V + ++     N   L  +L ++K+ K+    + D+ +     G+ ++  
Sbjct: 73  LIQLATAE-KVFLFQLNPDILN--FLKPILANQKQVKVGFGLKNDVHLFQKK-GIELQS- 127

Query: 101 FCTKIASRL--TRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASD 156
             T   S+      +    GLK+ +  L   N  K++    SDWS   LS  Q+ YAA+D
Sbjct: 128 --TVELSKCFSAFGFKQPVGLKNAVALLFQQNFPKSKKISMSDWSNMRLSSAQIGYAAAD 185

Query: 157 VVHLHALRLQFTEK 170
           V     +  +  ++
Sbjct: 186 VYAALLVFQELRKR 199


>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
 gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
          Length = 931

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 348 LKASELFAFDTETDSLDYMVANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ +   T +AS +  +   +H +      
Sbjct: 408 KPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIKHDTMLASYVYNSVGGKHDMDSLALR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  +    +++  + + 
Sbjct: 467 FLQHSCISFEQLAGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNA 526

Query: 180 ATSCCNF 186
                  
Sbjct: 527 IYQEIEV 533


>gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638]
 gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638]
          Length = 930

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 76/202 (37%), Gaps = 20/202 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      +  +  +   G    + +A    +APN          L
Sbjct: 348 LKKAPVFAFDTETDSLDNISANMVGLSFATEPGMAAYVPVAHDYLDAPNQISRERVLELL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK +K+    +FD  +L    G+ +R + + T + S +  +   +H +      
Sbjct: 408 KPLLEDEKAKKVGQNLKFDRGILQNY-GIELRGIAYDTMLESYILNSVAGRHDMDSLSDR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ-RLGRSD 178
            L       ++ +    + L+  Q+      +YAA D      L L+   KLQ + G  +
Sbjct: 467 WLKHKTVTFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQKQEGPLN 526

Query: 179 LATS-CCNFLMDRAELDLLGWE 199
           +        +   + ++  G +
Sbjct: 527 VFEHIEMPLVPVISRIERNGVK 548


>gi|157133254|ref|XP_001656202.1| hypothetical protein AaeL_AAEL012676 [Aedes aegypti]
 gi|157133256|ref|XP_001656203.1| hypothetical protein AaeL_AAEL012676 [Aedes aegypti]
 gi|108870907|gb|EAT35132.1| conserved hypothetical protein [Aedes aegypti]
 gi|108870908|gb|EAT35133.1| conserved hypothetical protein [Aedes aegypti]
          Length = 257

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 65/159 (40%), Gaps = 11/159 (6%)

Query: 21  DAIAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             +  D E     ++G      ++ ++QL+   G   ++++         L  +L +++ 
Sbjct: 44  PVLGFDCEWWCTSSMGNNR---KVALLQLASAGGLCILVQMTRLHSIPQELSDLLHNDRI 100

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+      D   L   +G+ +R     +  ++        +G+K   K +LG  + K +
Sbjct: 101 LKVGIGPLADGIKLHQDYGLALRGTMDLQTLAQRLDVPVP-YGMKALAKSVLGFEMDKKK 159

Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               S+W    L+  Q+ YA+ D +    +   F +++Q
Sbjct: 160 NVILSNWERPLLTKRQIDYASKDAIVGLEIFRAFNQRIQ 198


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 59/204 (28%), Gaps = 50/204 (24%)

Query: 17  ARYVDAIAVDTETLGLM-PRRDRLCIVQLSPGDGTVDIIRIAAG---------------- 59
           AR    +AVDTET GL     D +  + ++   G    I +  G                
Sbjct: 364 ARKQGFLAVDTETTGLNASAVDLVG-ISMAIAPGQACYIPLRHGATNDSAVGSGVAVQGG 422

Query: 60  ----QKNAP-------------NLVGMLVDEKREKIFHYGRFDIAVLF--YTFGVRVRPV 100
                 + P              +  +  D    KI H  ++D  VL      G+ + PV
Sbjct: 423 LNFSDDDTPAHYPQLDFETAMAEIKPLFEDPAVLKIGHNLKYDAHVLMRPRNGGINLAPV 482

Query: 101 FCTKIASRLT-RTYTNQHGLKDNLKELLGINISKAQQSSDWSAD-----DLS----DEQL 150
             T   S +       +H +       L     K    SD           S    +  L
Sbjct: 483 DDTMCLSYVLDGGRVERHSMDYLAGHWLDYTTIK---FSDVCGKGAKQIPFSELAPEAAL 539

Query: 151 QYAASDVVHLHALRLQFTEKLQRL 174
            YAA D      L +    +L   
Sbjct: 540 DYAAEDADITLRLWMILKPRLAGE 563


>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
 gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
          Length = 937

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVG 68
             D  A DTET GL      L  +  +   G    + +A    +AP           L  
Sbjct: 340 QADLFAFDTETDGLDIINANLIGLSFAITPGEAAYLPLAHDYSDAPIQLDRTLVLDKLKP 399

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L + +++K+    +FD ++L    G+ ++ + F T + S +  T   +H +    +  L
Sbjct: 400 LLENPQKQKVGQNLKFDKSILAR-CGIVLQGIAFDTMLESYILNTVAGRHDMDSLSQRYL 458

Query: 128 GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
                  ++ +      L+  Q+       YAA D      L      +LQ+      
Sbjct: 459 QHKTITFEEIAGKGKSQLTFNQIALEQAAPYAAEDADITLRLHHCLWPQLQQSKALSW 516


>gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 933

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 29/184 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------- 57
           A     +AVDTET GL      L  + L    G    I +                    
Sbjct: 342 AYERGWVAVDTETTGLNEMIADLVGISLCIEPGEACYIPLTHRESATDDLFGSDALAEGQ 401

Query: 58  -AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
               +    L  +  D    KI    ++D  +     GV V P+  T + S       + 
Sbjct: 402 MPLDEALTLLKPVFEDSSILKIGQNMKYDAKIFARY-GVNVVPIDDTMLMSYAMHGGKHG 460

Query: 117 HGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           HG+    +  L          +   + +  +    + +    YAA D      L   F  
Sbjct: 461 HGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKVPIDEA-TAYAAEDADITLRLWKLFKP 519

Query: 170 KLQR 173
           +L +
Sbjct: 520 QLHQ 523


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 20/199 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVG 68
            R   + A+D ET  L P   D +  + +S        I +          ++    L  
Sbjct: 314 LRESPSFAIDLETSSLDPFDCDIVG-ISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKLKE 372

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L D   + +    +FD  VL       V P F T IA+ L      +  L D   + LG
Sbjct: 373 ILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPHFDTMIAAYLLEPNEKKFNLDDLALKFLG 432

Query: 129 INISKAQQSSDWSADDL---------SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             ++  Q+   +S+  L          ++   Y+  D    + L    + KL      ++
Sbjct: 433 YKMTSYQELMSFSS-PLFGFSFADVPVEKAANYSCEDADITYRLYKILSLKLHEADLENV 491

Query: 180 -ATSCCNFLMDRAELDLLG 197
                   +   A ++L G
Sbjct: 492 FYKIEMPLVSVLARMELNG 510


>gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
 gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
          Length = 948

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 59/188 (31%), Gaps = 33/188 (17%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------AA 58
           R    IAVDTET  L   R  L  + L+ G      I +                     
Sbjct: 353 RAARIIAVDTETSALDAMRADLVGISLATGANEACYIPLGHLNDGGGGSDMFSEKPEQVP 412

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA-----SRLTRTY 113
                  L  +L  +   KI    ++D+ VL    G+ V P+  T I      +  +   
Sbjct: 413 LDDAVAALKPLLESDAVLKIGQNIKYDLNVLARY-GIAVAPIDDTMILSFDLDAGRSEGG 471

Query: 114 TNQHGLKDNLKELLGIN-ISKAQ------QSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
              HG+ +  +  LG   +S  +      +   +    L     +YAA D      L   
Sbjct: 472 VGGHGMDELSERHLGHTPLSFKEVCGTGRKQIPFGEVPLDKA-TEYAAEDADVTWRLHQH 530

Query: 167 FTEKLQRL 174
              +L   
Sbjct: 531 LKPRLAIE 538


>gi|126283020|ref|XP_001378586.1| PREDICTED: similar to exonuclease 3-5 domain-like 2, [Monodelphis
           domestica]
          Length = 496

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 44  LSPGDGTVDIIRIAA---GQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   +IR+     G+   P  LV +L D +  K+      D + L   + + VR 
Sbjct: 1   MASPTGYCILIRLPKLISGEAGFPQTLVDLLEDSRILKVGVGCWEDASKLLREYDLTVRG 60

Query: 100 VFCTK-IASRLTR-TYTNQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAAS 155
               + +A R  R    N   LK   + +L   + K+   +SS+W A+DL+ EQ+ YAA 
Sbjct: 61  CLDLRNLAMRQRRDLLPNGLSLKFLAETILSFPLDKSPLLRSSNWDAEDLTKEQVAYAAR 120

Query: 156 DVVHLHALRLQFTE 169
           D     AL L   E
Sbjct: 121 DAQISVALFLHLLE 134


>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
 gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
          Length = 928

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 19/194 (9%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEK 74
               IA+DTET GL      +  +  S        I     Q+        +  +L ++K
Sbjct: 354 PFKEIALDTETTGLEAMEAEIVGISFSVKKNEAYYIPFPKDQEETKKRLNIIKPLLENKK 413

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG------ 128
             KI    ++D+ +L       V  +F T IA  + +    +H +    +  L       
Sbjct: 414 SLKIGQNIKYDLLILKNYGIEVVGKLFDTMIAHYVVQPEL-RHNMDYLAEIYLNHITIPI 472

Query: 129 ---INISKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDL-ATSC 183
              I      Q S     +LS E +  YA  D      L+    + L+     +L  T  
Sbjct: 473 EDLIGPKGKNQKS---MRELSPEDVYIYACEDADITFQLKNAIEKDLKENQAEELFYTIE 529

Query: 184 CNFLMDRAELDLLG 197
              +    +++  G
Sbjct: 530 MPLVPVLTDMEYTG 543


>gi|308501869|ref|XP_003113119.1| CRE-MUT-7 protein [Caenorhabditis remanei]
 gi|308265420|gb|EFP09373.1| CRE-MUT-7 protein [Caenorhabditis remanei]
          Length = 943

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 22/166 (13%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN------LVGMLVDEKREKIFHYGRFDIAVLFY 91
           ++ I+QL   D    +  +   +K  P+         +   +  + I    R D+  +  
Sbjct: 465 KIAIIQLYFKDKVYLVDCVQLEEKRLPDERWQEFARQLFGSKNLKIIGFDMRNDLDAIIA 524

Query: 92  TFGVR-------VRPVFCTKIASR--------LTRTYTNQHGLKDNLKELLGINISKAQQ 136
              +R       ++  F  K  +         +         L D  + LLG  + K +Q
Sbjct: 525 LPALRETLAIDSIQNCFDLKRLAENICEIDMEILDLKRKTFKLADLTQSLLGQTLDKTEQ 584

Query: 137 SSDWSADDLSDEQLQYAASD-VVHLHALRLQFTEKLQRLGRSDLAT 181
            S+W +  L   QL YAA D VV +          L++    D+  
Sbjct: 585 CSNWQSRPLRKNQLLYAALDAVVVVLTFEKILEITLEKNSEIDIIE 630


>gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 930

 Score = 62.3 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      +  +  +   G    + +A    +AP           L
Sbjct: 348 LKKAPVFAFDTETDSLDNITANMVGLSFATEPGIAAYVPVAHDYLDAPEQLSRERVLELL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+   K+    ++D  +L    G+ +R + F T + S +  +   +H +      
Sbjct: 408 KPILEDDNALKVGQNLKYDRGILQNY-GIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+      +YAA D      L L+   KLQ+  G  +
Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQKHEGPLN 526

Query: 179 LATS-CCNFLMDRAELDLLGWE 199
           +  +     +   + ++  G +
Sbjct: 527 VFQNIEMPLVPVLSRIERNGVK 548


>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
 gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
          Length = 930

 Score = 61.9 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 62/202 (30%), Gaps = 22/202 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L  +  RL  +  +   G    + +     +AP           +
Sbjct: 346 LSKASLFAFDTETDSLDTQEARLVGMSFAIEPGHAAYLPLGHDYLDAPVQLPLEEVLELM 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNL 123
             +L  E   KI    ++D  VL     + ++ + + T + S +        +H +    
Sbjct: 406 KPILESENILKIGQNLKYDAEVLENY-DIELKGIGYDTMLESYVLNSVAGMGRHDMDSLA 464

Query: 124 KELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRS 177
              L       ++ +      L+  Q+       YAA D      L      +L+   + 
Sbjct: 465 DRHLNHKTVSFEEIAGKGKKQLTFNQIALEEAANYAAEDADVTLLLHQALYPQLEAEPKL 524

Query: 178 DLATS--CCNFLMDRAELDLLG 197
           +          +     ++  G
Sbjct: 525 NHIFQNIEMPLVPVLVRMERKG 546


>gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806]
          Length = 956

 Score = 61.9 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 20/121 (16%)

Query: 22  AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNL---------VG 68
            +A DTET  L PR  +L    C      G     +  I  G +N  NL           
Sbjct: 367 PVAWDTETTDLNPRVAKLVGIGC----CWGKELNAMAYIPIGHQNGDNLNLEIVLEKLRP 422

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L  +   K+F   +FDI V ++  G+ V+ + F T +AS +       H L+D     L
Sbjct: 423 ILASDNYPKVFQNAKFDIDVFYHQ-GITVKGLVFDTMVASYVLHPELT-HNLEDLCDRYL 480

Query: 128 G 128
            
Sbjct: 481 D 481


>gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118]
 gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118]
          Length = 933

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L P +  L  + ++   G    +        AP           L
Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQALAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 411 APLLTDPAVRKLGQHGKYDLHVMRRHGVALAGYADDTLLESFVLNSGSARHDMDSLAKRY 470

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           LG +  K +      A  +   Q+      +YAA D      L      +L   
Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLASE 524


>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
 gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
          Length = 951

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 38/194 (19%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---------------- 60
            +  D IAVDTET  L P R  L  +  +  +G    I +A  Q                
Sbjct: 350 LQQADLIAVDTETDALDPMRANLVGISFALTNGEACYIPLAHKQAVKEMTQTDLFTESEQ 409

Query: 61  ---------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105
                               L  +L +   +KI    ++D+ +            F T +
Sbjct: 410 NAEQFELVKNQLNKETCLAQLKPLLENPSIQKIGQNIKYDLTIFANHHIQLNGVCFDTML 469

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVH 159
            S +  + T +H +    +  LG  + + +  +      ++ +++      +YAA D   
Sbjct: 470 QSYVLDS-TGRHNMGALSERYLGHQVIEFESIAGKGKKQVTFDKIAIAQATEYAAEDADI 528

Query: 160 LHALRLQFTEKLQR 173
              L     ++LQ+
Sbjct: 529 TMKLHQVLWQELQQ 542


>gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 933

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L P +  L  + ++   G    +        AP           L
Sbjct: 351 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQALAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 411 APLLTDPAVRKLGQHGKYDLHVMRRHGVALAGYADDTLLESFVLNSGSARHDMDSLAKRY 470

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           LG +  K +      A  +   Q+      +YAA D      L      +L   
Sbjct: 471 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLASE 524


>gi|268537368|ref|XP_002633820.1| Hypothetical protein CBG19850 [Caenorhabditis briggsae]
          Length = 574

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 33/167 (19%)

Query: 23  IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKREKIF 79
           + VD E  L        L ++        + I  +A+           G+L  EK  K+ 
Sbjct: 327 VGVDGEIFLS-------LGVI---ATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT----------------YTNQHGLKDNL 123
           H  R   ++L + + V +R VF T++A  L +                    +     +L
Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHDKFGKPVHEMRPITFINLQRVYYPQSL 436

Query: 124 KELLGINISKAQQSSDWSADDLSDE-QLQYAASDVVHLH-ALRLQFT 168
             L  +   K  QS +W    +++E QL     +   L  AL    +
Sbjct: 437 M-LSDVTPRKMSQSPNWGVRPITEEFQLT-IVEEAHCLLSALYQALS 481


>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
 gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
          Length = 928

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 22/215 (10%)

Query: 4   IRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           + + + D+        +  +  A D ET  L      +  +  +   G    + +A    
Sbjct: 330 VTILDQDLFDSWLEKLKNSEVFAFDLETDALDTLSANIVGISFAIAPGEAAYLPVAHDYL 389

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
           +AP           L  +L D+   K+    ++D  VL     + +  + F T + S + 
Sbjct: 390 DAPEQLDRAAVLAQLKPLLEDDSAWKVGQNLKYDRGVLKNY-DIELAGIKFDTMLESYIL 448

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +   +H +       L       Q+ +    + L+  Q+       YAA D      L 
Sbjct: 449 NSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLTFNQIALEQASHYAAEDADVTLQLH 508

Query: 165 LQFTEKLQRLG--RSDLATSCCNFLMDRAELDLLG 197
           L+   +L++    R          L   + ++  G
Sbjct: 509 LKMWPELEKEAGPRKVFEQIEMPLLTVISRIERNG 543


>gi|302831237|ref|XP_002947184.1| hypothetical protein VOLCADRAFT_87286 [Volvox carteri f.
           nagariensis]
 gi|300267591|gb|EFJ51774.1| hypothetical protein VOLCADRAFT_87286 [Volvox carteri f.
           nagariensis]
          Length = 847

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 18/158 (11%)

Query: 23  IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           IA+D E    T+        + ++QLS     V +     G    P L   L D     +
Sbjct: 624 IAIDLEWRPETVSGRV--SPVALLQLSSASVCVVVRTCCMGYDLPPALRSFLKDPAHVLL 681

Query: 79  FHY---GRFDIAVLFYTFGV---RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
                     +  +  TFG+     R     +  +     +    GL    + +LG+ + 
Sbjct: 682 GFGWDSADE-LK-MQGTFGIGRADFRRFLDLQEVAASLGYHG--FGLSRLSQLVLGLPLH 737

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           K++    S+W+A  L+  QL+YA+ DV+    L     
Sbjct: 738 KSKAISRSNWAAPQLTSHQLKYASLDVLVAGQLFRALR 775


>gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDDKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp]
 gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp]
          Length = 931

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 32/182 (17%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +  + IA D+ET  +  ++ +L  +  +   G    + +A      P           L
Sbjct: 346 LQQAELIAFDSETTSIDAQQAQLVGLSFAVKAGEAAYVPLAHSYMGVPQQLDRDAVLKAL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKIASRLTRTYTNQHGLK 120
             +L D  + K+  + ++DI VL         P+      F T + S +  +   +H + 
Sbjct: 406 KPILEDPAKAKVGQHAKYDINVLANA----STPIAVQGVAFDTMLESYVLDSTATRHDMD 461

Query: 121 DNLKELLGINISKAQQSSDWSAD---DLSDEQLQ------YAASDVVHLHALRLQFTEKL 171
               + LG +     +  D +      L+ +Q+       YAA D      L  +   +L
Sbjct: 462 SLALKYLGHS---TIRFEDIAGRGAKQLTFDQIALEQAGPYAAEDADVTLRLHQELWGRL 518

Query: 172 QR 173
           + 
Sbjct: 519 EA 520


>gi|58263260|ref|XP_569040.1| hypothetical protein CNB05310 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57223690|gb|AAW41733.1| hypothetical protein CNB05310 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 912

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 14/147 (9%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI----FHYGRFDIAVLFYTFGVR 96
           +VQL      V I  +         +  ++ D K  K+       GR  +    + F   
Sbjct: 342 LVQLCDEKMIVLI-HLQDKMDLPAKVAELVRDPKIYKLGVQSMGDGRKLVRDFPHHFRQG 400

Query: 97  -VRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINISKAQ--QSSDWSADDLSDE 148
               ++     +         HG     L    +  LG  + K    +  DW A +L++ 
Sbjct: 401 GPAGLYELSRMAHAIDPQRAGHGSRLIKLATLCRAYLGKELDKDTKIRRGDW-AGELNEV 459

Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q  YAA+DV     +     +  +   
Sbjct: 460 QKAYAANDVFVSIQIFNALRKLAEERN 486


>gi|134107722|ref|XP_777472.1| hypothetical protein CNBB0460 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260164|gb|EAL22825.1| hypothetical protein CNBB0460 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 912

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 14/147 (9%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI----FHYGRFDIAVLFYTFGVR 96
           +VQL      V I  +         +  ++ D K  K+       GR  +    + F   
Sbjct: 342 LVQLCDEKMIVLI-HLQDKMDLPAKVAELVRDPKIYKLGVQSMGDGRKLVRDFPHHFRQG 400

Query: 97  -VRPVFCTKIASRLTRTYTNQHG-----LKDNLKELLGINISKAQ--QSSDWSADDLSDE 148
               ++     +         HG     L    +  LG  + K    +  DW A +L++ 
Sbjct: 401 GPAGLYELSRMAHAIDPQRAGHGSRLIKLATLCRAYLGKELDKDTKIRRGDW-AGELNEV 459

Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLG 175
           Q  YAA+DV     +     +  +   
Sbjct: 460 QKAYAANDVFVSIQIFNALRKLAEERN 486


>gi|322696271|gb|EFY88066.1| putative Werner syndrome helicase [Metarhizium acridum CQMa 102]
          Length = 551

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 28/177 (15%)

Query: 22  AIAVDTETLGLMPR-------RDRLCIVQLSPGD--GTVDIIRIAAGQKN--APNLVGML 70
            + +D E     P        RD + ++Q++     G   +   A G+ +  AP L  +L
Sbjct: 201 VLGLDLE---WFPYASRSSGPRDNVSLIQIASPGRIGLFHVAMFAEGEDDLVAPTLRTIL 257

Query: 71  VDEKREKI-FHYGRFDIAVLFYTFGVRVRPVFC-----TKI---ASRLTRTYTN-QHGLK 120
            D    K+  H    D   L     V+VR +F       ++   A++  +        L 
Sbjct: 258 EDPNVSKVGVHIQG-DCTRLKKYLDVQVRGIFELSHLYKQVKYTAAKTPKLINKVAVALS 316

Query: 121 DNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             + ++L + + K    +SS+W    L  +Q+ Y+ASD      L      K +RL 
Sbjct: 317 TQVHDILKLPLFKGDVVRSSNWMKR-LYYKQVLYSASDAYAGIQLYHVLDAKRKRLN 372


>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 934

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L P +  L  + ++   G    +        AP           L
Sbjct: 352 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQALAQL 411

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 412 APLLTDPAVRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 471

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           LG +  K +      A  +   Q+      +YAA D      L      +L   
Sbjct: 472 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLTSE 525


>gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
 gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
          Length = 956

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 37/177 (20%)

Query: 22  AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNL---------VG 68
            +A DTET  L PR  +L    C      G     +  I  G ++  NL           
Sbjct: 367 PVAWDTETTDLNPRVAKLVGIGC----CWGKELNAMAYIPIGHQSGDNLNLEIVLEKLRP 422

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L  +   K+F   +FDI V ++  G+ V+ + F T +AS +       H L+D     L
Sbjct: 423 ILASDDYPKVFQNAKFDIDVFYHQ-GITVKGLVFDTMVASYVLHPELT-HNLEDLCDRYL 480

Query: 128 ---------GINISKAQQSSDWSADDLSDEQLQYAASD--VVHLHALRLQFTEKLQR 173
                     + I   +  +D      +     Y   D    +L  LR +   +L +
Sbjct: 481 TGITSLSYKSLGIPAGKTIAD-LDIPTTA---NYCGLDAYATYL--LREKLQAELTK 531


>gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017]
 gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017]
          Length = 957

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 29/180 (16%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRI-------AAGQKN 62
           E        +A DTET  L PR   L    C  Q    +  +  I +          +  
Sbjct: 359 ESCTDGNQPVAWDTETDSLSPRDAHLVGIGCCWQ--GEEQAIAYIPVGHKEGDNLDLETA 416

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121
              L  +L  +   K+    +FD  V  +  G++++ V F T +A+ +       H L D
Sbjct: 417 LEGLRPILESDVYPKVLQNAKFDRLVFQFQ-GIQLQGVVFDTMLANYVLNPE-RSHNLTD 474

Query: 122 NLKELLGIN-------ISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173
             +  L I        + K Q  +D     LS  Q+ +Y   DV   + LR +   +L  
Sbjct: 475 LSRNYLQITAKSYKELVKKGQTIAD-----LSITQVAEYCGLDVFTTYQLREKLEAELAA 529


>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
 gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
          Length = 911

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 24/179 (13%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVG 68
             D  A DTET  L   + +L  +  S   G    + +A    +AP           L  
Sbjct: 330 GADLFAFDTETTSLDYMQAQLVGMSFSVKAGEAAYLPVAHDYPDAPEQLSLEFVMQKLGP 389

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L D  + K+    ++D +VL    G  +  + F T + S +  +   +H +     + L
Sbjct: 390 ILADANKAKVGQNLKYDKSVLANA-GYELNGIKFDTMLESYVFNSVGTRHDMDSLALKYL 448

Query: 128 GINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177
           G    K     D        L+  Q++      YAA D      L      K++   + 
Sbjct: 449 GH---KNISFEDIAGKGKKQLTFNQIELDKAAPYAAEDADITLRLHEVLWPKIEADEKL 504


>gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
 gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
          Length = 920

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 74/191 (38%), Gaps = 21/191 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKREKI 78
           +++DTET  +      L  +  S  +     + I+  ++ A N+V +      +E+  K+
Sbjct: 350 LSLDTETTSVDAIDAELVGLSFSVEEKEAFYVAISPNREEALNMVNIFKPLYENEEILKV 409

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS--- 132
               ++D  VL          +F T IA  L +   + H +    + LL    ++I    
Sbjct: 410 GQNIKYDYEVLKKYGITLKGKLFDTMIAHYLIQPELH-HNMDYMAETLLNYQTVHIEDII 468

Query: 133 ----KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186
               K Q+    +  DL+  ++  YA  D      L+     KL+ +    L        
Sbjct: 469 GPKGKKQK----NMRDLAPAEVSDYACEDADITLRLKNALEPKLKEVNAESLFWEIEMPL 524

Query: 187 LMDRAELDLLG 197
           +   A+++L G
Sbjct: 525 VRVLADMELHG 535


>gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803]
 gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803]
          Length = 996

 Score = 61.9 bits (150), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 28/197 (14%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-----------APNLV 67
             + +AVDTET  L P + +L  + +  G G  D+  I  G  +              L 
Sbjct: 396 PSEPVAVDTETTDLNPFKAQLVGIGVCWGAGLSDLAYIPVGHTDPALTQLPLEVVLEQLA 455

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
             L      K     ++D  +L     V    V  T +A    R    +H L    +   
Sbjct: 456 PWLSSPSHPKALQNAKYDRLILLRHGLVLGGVVMDTLLA-DYLRDAAAKHSLDGMAERDY 514

Query: 128 GINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           GI           +K  ++S ++    SD+   Y A DV     L +   ++LQ  G   
Sbjct: 515 GITPTLFSDLVGKAKDGKASCFAEVP-SDQAALYCAMDVHLTRRLAIDLRQQLQASG--- 570

Query: 179 LATSCCNFLMDRAELDL 195
                   L+D+ EL L
Sbjct: 571 ---EQLTNLLDQVELPL 584


>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
 gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
          Length = 980

 Score = 61.9 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 56/189 (29%), Gaps = 32/189 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA------------- 63
           A  V  +AVDTET  L      L  V LS   G    I +A                   
Sbjct: 386 AYEVGYVAVDTETDALNAMESGLVGVSLSCTPGKACYIPLAHVDGEGDLLGGGALLEGQI 445

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  ML D    KI    ++D  VL    GV + P   T + S         +
Sbjct: 446 PLAEAITLLKPMLEDPAVLKIAQNMKYDWLVLKRY-GVEMAPFDDTMLLSYALDAGMGGN 504

Query: 118 GLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           G+ +  +  L              K+Q S D     L      YAA D      L     
Sbjct: 505 GMDELSQRWLNHTPIPFKEVCGSGKSQISFD--KVPLDKA-TAYAAEDADVTLRLWKILK 561

Query: 169 EKLQRLGRS 177
            +L     +
Sbjct: 562 PRLAAEEMT 570


>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 930

 Score = 61.9 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 24/212 (11%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---- 65
           +  E AA+   +   DTET GL     D + +   +   G    +     ++ A      
Sbjct: 349 LAKELAAQ--KSFCFDTETTGLDALVADIVGL-SFAIEKGKAYYVPTPDSREQALEIINI 405

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              +L D   +KI    ++DI +L          +F T +A  L    T +HG+    + 
Sbjct: 406 FKPILEDPAIQKIGQNIKYDILLLSRYDVKVKGALFDTMLAHYLIDPDT-RHGMDVLAEN 464

Query: 126 LLG---INISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLG 175
            LG   ++I+K       +Q    +  D+  E + +YA+ D      L+ +F   L+   
Sbjct: 465 YLGYIPVSITKLIGEKGKKQG---NMRDVEIELIKEYASEDADITLQLKEKFEPLLEETA 521

Query: 176 RSDLATS-CCNFLMDRAELDLLGWE-NVDIFS 205
              LA       +   +E++  G + +VD+ S
Sbjct: 522 TLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLS 553


>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
 gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
          Length = 894

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 16/166 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--------KNAPNLVG 68
               +A  +DTET  L      +  + L+  +G    I +            +    L  
Sbjct: 315 LEKCEAFCIDTETTSLDVMMAEIVGISLAIEEGKAAYIPLTHDDGSPQLLREEVLTALNP 374

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L +   +KI    ++D +VL    G+ ++ + + T + S +  + + +H +     + L
Sbjct: 375 ILENPTIKKIGQNLKYDYSVLRNH-GITLKGIYYDTMLESYVLNSGSGRHDMDSLALKYL 433

Query: 128 GINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQF 167
           G      ++ +   A  L  +Q+       YAA D      L  + 
Sbjct: 434 GHKTISYEEIAGKGAKQLRFDQIPVEKAGAYAAEDADITLQLHHKL 479


>gi|293334477|ref|NP_001168997.1| hypothetical protein LOC100382828 [Zea mays]
 gi|223974363|gb|ACN31369.1| unknown [Zea mays]
          Length = 98

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-- 175
           GL    KE+LG  ++K +++S+W    L+  Q +YAA D V L  +  +   +  + G  
Sbjct: 15  GLSGLSKEILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHEHMRRQAQFGVS 74

Query: 176 ---RSDL 179
              R + 
Sbjct: 75  EGSRVEW 81


>gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7]
 gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7]
          Length = 860

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 48/210 (22%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAP---------NLVGM 69
            D +A+DTET  L P + RL  + +S   G    I +A  G  +AP          L   
Sbjct: 284 ADLVALDTETTSLDPMQARLVGLSMSVEAGVACYIPVAHRGPDHAPQLPKQEVLDRLRPW 343

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG- 128
           L D K  K+ H  ++D  VL             T + + +  ++  +  +++  +  LG 
Sbjct: 344 LEDSKAHKLLHNAKYDTHVLMNEGVALAGVAEDTMLQAYVLESH-KRVNMQELAERWLGR 402

Query: 129 --------------------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                               I++ KA                 YA  D      L     
Sbjct: 403 IGTTYEDLCGKGAKQIGFDEIDVDKAS---------------HYACEDADFTLQLHQVLR 447

Query: 169 EK-LQRLGRSDLATSCCNFLMDRAELDLLG 197
            K L   G  ++           A ++  G
Sbjct: 448 PKVLADPGLENIYQLEVQASATLAIIERNG 477


>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
 gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
          Length = 910

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 25/190 (13%)

Query: 6   VHEGDIPA-ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + + D+       +  +  + DTET  L   + ++  +  +   G    + +A     AP
Sbjct: 315 LTDADLTRWFEKLQQAELFSFDTETNSLDYIQAQVVGLSFAVAPGDAAYLPLAHDYLGAP 374

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L D  R K+  + +FD  VL    G+ ++ + F T + S +  + 
Sbjct: 375 EQLDREQTLAKLKPLLEDPTRLKVGQHLKFDRNVLRNH-GIHLQGIAFDTMLESYVLNST 433

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALR 164
            ++H + D  K+ L       Q   D        L+  Q++      YAA D      L 
Sbjct: 434 ASRHNMDDLAKKYLNYT---TQTFEDVAGKGVKQLTFNQVELEKAAFYAAEDADITLRLH 490

Query: 165 LQFTEKLQRL 174
                ++++ 
Sbjct: 491 QTLWPQVEKE 500


>gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042]
          Length = 928

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +        I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPSVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|308191629|sp|B3LWP6|WRNXO_DROAN RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5'
           exonuclease
          Length = 355

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 18/173 (10%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 160 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYIYQLTNLKKLPSALVALINHPKVR--L 216

Query: 80  H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F        +       +   +      +  L+     +    + 
Sbjct: 217 HGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNVICQTGGRWSLERLANFICRKAMD 276

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           K++  + S W    L + QL YAA DV     +       L++  ++ LA   
Sbjct: 277 KSKKVRMSKWHVIPLDENQLMYAAIDVY----IGQVIYRDLEQREKTKLANEE 325


>gi|194743270|ref|XP_001954123.1| GF18118 [Drosophila ananassae]
 gi|190627160|gb|EDV42684.1| GF18118 [Drosophila ananassae]
          Length = 340

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 18/173 (10%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 145 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYIYQLTNLKKLPSALVALINHPKVR--L 201

Query: 80  H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F        +       +   +      +  L+     +    + 
Sbjct: 202 HGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNVICQTGGRWSLERLANFICRKAMD 261

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           K++  + S W    L + QL YAA DV     +       L++  ++ LA   
Sbjct: 262 KSKKVRMSKWHVIPLDENQLMYAAIDVY----IGQVIYRDLEQREKTKLANEE 310


>gi|170109177|ref|XP_001885796.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639376|gb|EDR03648.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 250

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 34/194 (17%)

Query: 9   GDIPAECAARYVDA----IAVDTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNA 63
            D+ A+      +     +AVD E + L     ++ I+Q+ S     V ++ +      A
Sbjct: 17  NDLLADLLPDAFNFRAITLAVDLEGINLCRH-GKISIIQIMSSVSEVVWLVDVTTLGSQA 75

Query: 64  PN--------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
            +        L  +L D   +K+F+  R D   L+  +GV +  V+  ++     R    
Sbjct: 76  FDHVGPYGRTLRMILEDTGIKKVFYDVRNDADALYNLYGVNLTGVYDLQLLELAVRHSLR 135

Query: 116 QH-----GLKDNLKELL------------GINI---SKAQQSSDWSADDLSDEQLQYAAS 155
           +H     GL  ++   L            G+ +         S +    L    + Y A 
Sbjct: 136 RHTKFLNGLGKSITSYLTPPTEWEPIKQAGLRLFQPDFGGSYSVFEDRPLDPRIVAYCAQ 195

Query: 156 DVVHLHALRLQFTE 169
           DV  L  L      
Sbjct: 196 DVTLLFELEETLRR 209


>gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
 gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
          Length = 898

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 73/193 (37%), Gaps = 21/193 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAP------NLVGMLVDEKR 75
           IA+D ET  L P   ++  + ++  +G    I IA  G KN P       L  +  +  +
Sbjct: 327 IALDLETTSLDPFEGKIVGISIAVDEGKAFYIPIAHVGAKNIPIESVKKFLRDLF-NSGK 385

Query: 76  EKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGI----- 129
               H  +FD+  +    G+  + P F + I + L      +  L +   +LLG      
Sbjct: 386 TVGGHNIKFDLKFISR-LGIEPQIPSFDSMIEAYLLNPNEKKFNLDELSLKLLGHKMISY 444

Query: 130 -NISKA---QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
            ++ K      + D+S   +    ++Y+  D      +       +     ++L      
Sbjct: 445 EDLVKDTIPLFAGDFSYIPVDTA-VKYSCEDADMSLRIHNLLHPLIYSNEMNELYEKIEL 503

Query: 185 NFLMDRAELDLLG 197
             ++  A L+L G
Sbjct: 504 PMILVLANLELNG 516


>gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 677

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 94  LKAAELFAFDTETDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 153

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ + + T +AS +  +   +H +      
Sbjct: 154 KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALR 212

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q++      YAA D      L  +    +++  +   
Sbjct: 213 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKS 272

Query: 180 ATSCCNF 186
                  
Sbjct: 273 VYEEIEM 279


>gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01]
 gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01]
          Length = 960

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 24/178 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +  + IA D+ET  +  ++ +L  +  +   G    I +A      P           L
Sbjct: 375 LKQAELIAFDSETTSIDAQQAQLVGLSFAVKAGEAAYIPLAHSYMGVPQQLDRDAVLNAL 434

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYT-FGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
             +L D  + K+  + ++DI VL      + V+ V F T + S +  +   +H +     
Sbjct: 435 KPILEDPAKAKVGQHAKYDINVLANASTPIMVQGVAFDTMLESYVLDSTATRHDMDSLAL 494

Query: 125 ELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           + L  +     +  D     A  L+ +Q+       YAA D      L  +   +L+ 
Sbjct: 495 KYLNHS---TIRFEDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQELWGRLEA 549


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 70/216 (32%), Gaps = 47/216 (21%)

Query: 2   TTIRVHEGDIPAE----CAARYVDAIAVDTETLGLMPRRDRL---CIVQLSP-------- 46
           TT      D+        AAR    +A DTET  L P +  L    +  ++         
Sbjct: 371 TTAYTTIRDLAELDRWVAAARETGVVAFDTETTSLDPMQAELVGFSL-AIADNGKDASGT 429

Query: 47  ----------------GDGTVDIIRIAAGQ----KNAPNLVGMLVDEKREKIFHYGRFDI 86
                           GD   D IR+A GQ    +    L  +L DE   KI    ++D 
Sbjct: 430 DIRAAYVPLTHKTGSGGDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDY 489

Query: 87  AVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADD 144
            ++    GV ++    T + S +       HG+    +  LG      K    S      
Sbjct: 490 LLMKRH-GVVMQSFDDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYKDVAGS--GKSS 546

Query: 145 LS------DEQLQYAASDVVHLHALRLQFTEKLQRL 174
           ++      D+   YAA D      L +    +L   
Sbjct: 547 ITFDFVDIDKATAYAAEDADVTLRLWMVLKPRLAAE 582


>gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
 gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
          Length = 908

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 17/195 (8%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKQAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKFYIEKHYIIQKFNN 395

Query: 69  ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +   + K   I    +FD  +L       + P F T IA+ L  T + +  L    ++ L
Sbjct: 396 LFKSNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYL 452

Query: 128 GINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                K +   Q +D +  ++S E    Y+  D      L   FTEKL+  G   L    
Sbjct: 453 MHKNIKYEDVIQKND-NFANISLEMATSYSCEDADITFRLFNIFTEKLKGDGLDKLMHEI 511

Query: 183 CCNFLMDRAELDLLG 197
              F     E++  G
Sbjct: 512 EMPFNKVIIEMEENG 526


>gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr]
 gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr]
          Length = 908

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 17/195 (8%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKQAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKFYIEKHYIIQKFNN 395

Query: 69  ML-VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +   + K   I    +FD  +L       + P F T IA+ L  T + +  L    ++ L
Sbjct: 396 LFKSNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYL 452

Query: 128 GINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                K +   Q +D +  ++S E    Y+  D      L   FTEKL+  G   L    
Sbjct: 453 MHKNIKYEDVIQKND-NFANISLEMATSYSCEDADITFRLFNIFTEKLKGDGLDKLMHEI 511

Query: 183 CCNFLMDRAELDLLG 197
              F     E++  G
Sbjct: 512 EMPFNKVIIEMEENG 526


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 20/199 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69
            +   + A+D ET  L P    +  + LS        I +          ++    L  +
Sbjct: 314 LKETPSFAIDLETSSLDPFECDIAGISLSFKPKEAYYIPLHHRNAQNLDEKEVLKKLKEI 373

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D   + +    +FD  VL    G+    P F T IA+ L      +  L D   + LG
Sbjct: 374 LEDPGAKIVGQNLKFDYKVLMVK-GIEPVPPHFDTMIAAYLIEPNEKKFNLDDLALKFLG 432

Query: 129 INISKAQQSSDWSAD---------DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             ++  Q+   +S+           L      Y+  D    + L    + KL      ++
Sbjct: 433 YKMTSYQELMSFSSPLFGFSFVDVPLEKA-ANYSCEDADITYRLYKTLSLKLHEADLENV 491

Query: 180 -ATSCCNFLMDRAELDLLG 197
                   +   A ++L G
Sbjct: 492 FYKIEMPLVSVLARMELNG 510


>gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia
           stuttgartiensis]
          Length = 887

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 22/180 (12%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--------APNLVGMLVD 72
           DA A+D ET G  P +  +  +  S        + + A +           P +  +L D
Sbjct: 313 DAFAIDLETTGTDPLKAHIVGLSFSWEQKEAYYVPLMAPENTRHLTADIVLPEIRKVLED 372

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG--- 128
           E ++KI    ++D+ VL     + ++ + F + IAS L       H L D   E L    
Sbjct: 373 ESKKKIGQNIKYDLLVLKKH-NIGLKGIYFDSMIASYLLNPAKRNHNLDDIAFEYLSYKT 431

Query: 129 ------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
                 I   K Q + D     + D+  QYA  D      L       L++ G   L   
Sbjct: 432 IMIAELIGSGKQQITMD--KVPV-DKVCQYACQDADITFRLAETMAPLLKKEGLWQLFQE 488


>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
 gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
          Length = 980

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 60/210 (28%), Gaps = 40/210 (19%)

Query: 9   GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT---------VDIIRIAA 58
             + A CA AR    +A DTET  L   +  L    L+  +                +A 
Sbjct: 368 EQLKAWCAMARETGVVAFDTETTSLDAMQAELVGFSLAVPEAAPDTGELKVRACYAPLAH 427

Query: 59  GQKN-------------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
                                     L  +L +    KI    ++D+ V+     + ++ 
Sbjct: 428 SNGVGDLLGGGGLQPGQMPVRAALDELKALLEEPAVLKIGQNLKYDMLVMAQH-NIEIKS 486

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------ 151
              T + S +       HG+    +  LG      K    S      +   Q+       
Sbjct: 487 FDDTMLLSYVLDAGQGGHGMDALSERWLGHKTIGYKDVTGS--GKSAIPFAQVAIDKATA 544

Query: 152 YAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           YAA D      L      +L   G + +  
Sbjct: 545 YAAEDAEVTLRLWHALKVRLVSEGMTSVYE 574


>gi|156549012|ref|XP_001607325.1| PREDICTED: similar to 3-5 exonuclease [Nasonia vitripennis]
          Length = 419

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 60/173 (34%), Gaps = 14/173 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           AI  D E           +  + Q+   +    ++ I   +K   +L+ +L   K + + 
Sbjct: 241 AIGFDLEWPF-SFQTGSGKTALAQICLNEKECHLLHIYNLKKLPASLIALLSHSKVKLVG 299

Query: 80  HYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              + D+  L   F                   +      + +  L+     LL   ISK
Sbjct: 300 VNIKNDVWKLTRDFKEFPGQKVVDNNCLDCGPYANSVLNRSCRWSLERLTAYLLKKRISK 359

Query: 134 AQ--QSSDWSADDLSDEQLQYAASD--VVHLHALRLQFTEKLQRLGRSDLATS 182
               + S W    LSD+Q  YAA+D  V  L  L ++  E L +  R +    
Sbjct: 360 DSSVRRSKWHIQPLSDKQKLYAATDAYVSLLLHLTIEQQEVLNQA-RLEEQEE 411


>gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 1009

 Score = 61.6 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 65/194 (33%), Gaps = 32/194 (16%)

Query: 22  AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNL---------VG 68
            +A DTET  L PR   L    C      G G  D+  I  G K   NL           
Sbjct: 410 PVAWDTETTALEPRDAELVGIGC----CWGTGEADLAYIPTGHKTGQNLDKAIVLEALRP 465

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL- 127
           +L D    K     +FD  +L          VF T +AS +       H L    KE L 
Sbjct: 466 ILEDNNYPKALQNAKFDRLILRCQGIKLAGVVFDTMLASYVIDPEG-SHNLTALCKEYLE 524

Query: 128 ---------GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
                       +SK Q  +D  A  +      Y   DV     L  +  EKL+ L    
Sbjct: 525 DPKLTAKSYKDLVSKEQTIAD-LAIPIVA---NYCGMDVYTTFQLVSKLREKLEELDAEK 580

Query: 179 LATSCCNFLMDRAE 192
             T+    L+ + E
Sbjct: 581 PLTASLEQLLIKVE 594


>gi|242775502|ref|XP_002478657.1| 3'-5' exonuclease/helicase (Wrn), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218722276|gb|EED21694.1| 3'-5' exonuclease/helicase (Wrn), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 1028

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 39  LCIVQLSPGDGT----VDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTF 93
           + ++Q++  +      + + R        P  L  +L      K+    + D + +    
Sbjct: 815 VSLIQIANEERIGLFHIALFRGNEIHDLVPPSLRQLLESTTTVKVGVSIKADCSRVRRHL 874

Query: 94  GVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLKELLGINISKA--QQSSDWSAD 143
           G+  R +F      +L +  T Q          L   ++E+LG+ + K    + SDW+  
Sbjct: 875 GINTRSLFELSHLYKLVKYGTTQPKLVDRRTVNLAQQVEEVLGLPLKKDGDVRKSDWTK- 933

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEK 170
            L   Q+QYAASD      L      K
Sbjct: 934 PLDYAQVQYAASDAYACICLHRTLEVK 960


>gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101]
          Length = 1020

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 69/205 (33%), Gaps = 40/205 (19%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----------QKNAPN---- 65
              +A+DTET  L P R  L  V ++ G+G  D+  I  G             +P     
Sbjct: 415 AAPVALDTETTSLNPFRAELVGVGVAWGEGPADLAYIPIGHRVGSSGETPDLLSPPPAQL 474

Query: 66  --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L   L   +  K     ++D  +L          V  T +A    R    +H
Sbjct: 475 PLDQVLTALAPWLGSAQHPKALQNAKYDRLILLRHGLPLEGVVMDTLLA-DYLRDANAKH 533

Query: 118 GLKDNLKELLG-------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           GL+   +   G         + K    +D+SA  +    L Y   DV     L      +
Sbjct: 534 GLELLAQRNFGFLPTSYSELVPKG---ADFSAVPIEQAAL-YCGMDVHVTRRLAPLLRAQ 589

Query: 171 LQRLGRSDLATSCCNFLMDRAELDL 195
           L+ LG           L+DR EL L
Sbjct: 590 LEELG------PQLPQLLDRVELPL 608


>gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
          Length = 929

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 22/191 (11%)

Query: 4   IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRD-RLCIVQLSPGDGTVDIIRIAAGQ 60
           + + + D       +  D+   A D ET  L       + +   +   G    + +A   
Sbjct: 331 VTILDEDTFTSWLKKLQDSELFAFDLETDSLDTLSANIIGL-SFATAPGEAAYLPVAHDY 389

Query: 61  KNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
            +AP           L  +L D + +K+    +FD  VL     + ++ + F T + S  
Sbjct: 390 LDAPEQLDRSDVLARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIRFDTMLESYA 448

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHAL 163
             +   +H +       L       ++ +    + L+  Q+       YAA D      L
Sbjct: 449 LNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 508

Query: 164 RLQFTEKLQRL 174
            ++   +L++ 
Sbjct: 509 HVKMWPELEKE 519


>gi|212532415|ref|XP_002146364.1| 3'-5' exonuclease/helicase (Wrn), putative [Penicillium marneffei
           ATCC 18224]
 gi|210071728|gb|EEA25817.1| 3'-5' exonuclease/helicase (Wrn), putative [Penicillium marneffei
           ATCC 18224]
          Length = 973

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 16/152 (10%)

Query: 39  LCIVQLSPGDGTVDI-IRIAAG----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
           + ++Q++  +      I +  G        P+L  +L      K+    + D + +    
Sbjct: 758 VSLIQIANEERIALFHIALFKGNEIHDLVPPSLKLLLESTDTVKVGVSIKADCSRIRRHL 817

Query: 94  GVRVRPVFCTKIASRLTRTYTNQ--------HGLKDNLKELLGINISKAQ--QSSDWSAD 143
            +  R  F      +L +  + Q          L   ++ELLG+ + K    + SDW+  
Sbjct: 818 DIDTRGQFELSHLYKLVKYGSTQPKSVNRRAVNLAQQVEELLGLPLRKDSDVRKSDWTK- 876

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            L   Q+QYAASD      L      K + L 
Sbjct: 877 PLDYAQVQYAASDAYACICLYNTLEAKRKALN 908


>gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15]
          Length = 868

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 19/202 (9%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           +I   + ++          +  A DTET  L      +  V  +   G    + +     
Sbjct: 271 SIITDQKELDQWLERLGAAELFAFDTETTSLRYMDAEIVGVSFAVKPGEAAYVPLGHDYM 330

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLT 110
            AP           L  +L +    K+    ++D  VL    G+ +  +   T + S + 
Sbjct: 331 GAPEQLDRDQVLDQLKPLLENPDLAKVGQNLKYDKNVLANH-GITLEGIAEDTMLESYVL 389

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALR 164
            +   +H +       LG   +  +  +   A  L+  Q+       YAA D      L 
Sbjct: 390 NSVATRHDMDSLAMYYLGEKTTSFESIAGKGAKQLTFNQIDLEKAAPYAAEDADITLRLH 449

Query: 165 LQFTEKLQRLGRSDLATSCCNF 186
                KL+  G+        + 
Sbjct: 450 QTLRPKLKETGKLAAVYEDIDL 471


>gi|302837233|ref|XP_002950176.1| hypothetical protein VOLCADRAFT_104579 [Volvox carteri f.
           nagariensis]
 gi|300264649|gb|EFJ48844.1| hypothetical protein VOLCADRAFT_104579 [Volvox carteri f.
           nagariensis]
          Length = 683

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG--LKDNLK 124
           V +L D +  K     + D+  L   FGV+VR     ++ ++    +    G  L+    
Sbjct: 199 VRLLSDPRVIKAGVGIQEDVRRLERDFGVQVRGAVDVRLVAQRVHPHCLAGGGSLQALSS 258

Query: 125 ELLGINISKAQQSSDWSAD-DLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            LLG  + K+ Q S W ++  L + Q+ YAA D      L  +   +  R
Sbjct: 259 ALLGRQLDKSPQRSHWGSNGQLDERQVAYAAHDAWLSRELLCELHGRYSR 308


>gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a]
 gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a]
          Length = 924

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +  D I+ DTET  L   R RL  + L+   G    I +      AP           L
Sbjct: 342 LQQADLISFDTETDALDAMRARLVGISLAVEPGRAAYIPVGHDYPGAPAQLPMQQVLDAL 401

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  ++K+  +G++D+ VL    GV+V+     T + S +  +   +H +      
Sbjct: 402 RSVLQDPAKKKLGQHGKYDLHVLRRH-GVQVQGYHDDTMLESFVLNSTATRHDMDSLALR 460

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            LG +  K +  +   A  +   Q+      +YAA D      L      +L   
Sbjct: 461 YLGYSTIKFEDVAGKGAKQIPFSQVGIDEASRYAAEDADITLRLHHALQPQLLAE 515


>gi|17554336|ref|NP_499105.1| MUTator family member (mut-7) [Caenorhabditis elegans]
 gi|466063|sp|P34607|MUT7_CAEEL RecName: Full=Probable exonuclease mut-7; AltName: Full=Exonuclease
           3'-5' domain-containing protein 3 homolog
 gi|3881488|emb|CAA80137.1| C. elegans protein ZK1098.8, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 910

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 25/165 (15%)

Query: 35  RRDRLCIVQLSPGD--GTVDIIRIAAG---QKNAPNLV-GMLVDEKREKIFHYGRFDIAV 88
              ++ I+QL   +    VD + +                +  D   + +    R D+  
Sbjct: 447 HDSKIAIIQLFFKNCVWLVDCVELEKANMADDWWQKFASRLFGDSPVKVVGFDMRNDLDA 506

Query: 89  LFY-----------------TFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           +                           V    I   +         L D    LLG+ +
Sbjct: 507 MATIPALKSSMKIEDTKNAFDLKRLAENVCD--IDMEILELPKKTFKLADLTHYLLGLEL 564

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
            K +Q S+W    L  +Q+ YAA D V +     +    ++   +
Sbjct: 565 DKTEQCSNWQCRPLRKKQIVYAALDAVVVVETFKKILSIVEEKNK 609


>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
          Length = 929

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 22/191 (11%)

Query: 4   IRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRD-RLCIVQLSPGDGTVDIIRIAAGQ 60
           + + + D       +  D+   A D ET  L       + +   +   G    + +A   
Sbjct: 331 VTILDEDTFTSWLKKLQDSELFAFDLETDSLDTLSANIIGL-SFATAPGEAAYLPVAHDY 389

Query: 61  KNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
            +AP           L  +L D + +K+    +FD  VL     + ++ + F T + S  
Sbjct: 390 LDAPEQLDRSDVLARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIRFDTMLESYA 448

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHAL 163
             +   +H +       L       ++ +    + L+  Q+       YAA D      L
Sbjct: 449 LNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 508

Query: 164 RLQFTEKLQRL 174
            ++   +L++ 
Sbjct: 509 HVKMWPELEKE 519


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 18/198 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69
            +   + A+D ET  L P    +  + +S        I +          ++    L  +
Sbjct: 314 LKETPSFAIDLETSSLDPFDCDIAGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKLKEI 373

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D   + +    +FD  VL       V P F T IA+ L      +  L D   + LG 
Sbjct: 374 LEDPGAKIVGQNLKFDYKVLMVKGVEPVPPHFDTMIAAYLIEPNEKKFNLDDLALKFLGY 433

Query: 130 NISKAQQSSDWSAD---------DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL- 179
            ++  Q+   +S+           L      Y+  D    + L    + KL      ++ 
Sbjct: 434 KMTSYQELMSFSSPLFGFSFVDVPLEKA-ANYSCEDADITYRLYKTLSLKLHEADLENVF 492

Query: 180 ATSCCNFLMDRAELDLLG 197
                  +   A ++L G
Sbjct: 493 YKIEMPLVSVLARMELNG 510


>gi|223997400|ref|XP_002288373.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975481|gb|EED93809.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 782

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 23/46 (50%)

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
           S L        GL    +  LG  + KA+Q SDWSA  LS EQ +Y
Sbjct: 712 SGLGGKGGMHLGLSRACEHYLGKQLDKAEQCSDWSARPLSTEQREY 757


>gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR]
 gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR]
          Length = 921

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 59/174 (33%), Gaps = 22/174 (12%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGML 70
           D  A DTET  L      L  V L+   G    I +      AP+          L  +L
Sbjct: 340 DYFAFDTETTSLNYMEAELVGVSLAMAPGEAVYIPVGHDYMEAPDQVGRDWLLEQLKPLL 399

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
             EK +K+    ++D  +L          +  T +AS +  +  ++H +       L   
Sbjct: 400 EAEKPQKVGQNLKYDSHILRRYKIRLAGILNDTMLASYVFNSVGSRHDMDTLSLHYLNH- 458

Query: 131 ISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG 175
             K     D     A  L+  Q+       YAA D    + L      K++  G
Sbjct: 459 --KTISFEDIAGKGAKQLTFNQIALEQAGPYAAEDADITYRLHDVLWNKVKETG 510


>gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
 gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
          Length = 917

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 77/199 (38%), Gaps = 29/199 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM------LV 71
            ++VDTET    P    L  +  S  + T   + +    +  Q  + NL  +      ++
Sbjct: 341 VLSVDTETTSPNPAMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNLDEVREHLGPVL 400

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
             +  K+    ++D+ VL    G  +  + F T +AS + R    +H + D  KE L  N
Sbjct: 401 SSQVPKVGQNIKYDLIVLENH-GFVLNNIQFDTMLASYVLRPEGRRHNMDDLAKEFLNYN 459

Query: 131 I----------SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
                       K ++ +D     +  EQ+ +YAA D      L   F + ++  G   +
Sbjct: 460 TITYEDLVGTGKKKKELTD-----IDPEQVAEYAAEDADVTFRLYQIFRKSIKDSGVEPI 514

Query: 180 ATS-CCNFLMDRAELDLLG 197
                   +   A+++  G
Sbjct: 515 LREMEMPLISVLAKMEKTG 533


>gi|17537593|ref|NP_496590.1| hypothetical protein Y57A10A.13 [Caenorhabditis elegans]
 gi|6782292|emb|CAB55016.2| C. elegans protein Y57A10A.13, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 710

 Score = 61.6 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           GL    ++LLG  + K +Q S W    L   QL+YAA D   +  L  +      +LG
Sbjct: 628 GLSFICEKLLGRPLDKTEQCSVWDRRPLRCLQLRYAAMDAYCMLLLYEKCATIFAKLG 685


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 20/199 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVG 68
            R   + A+D ET  L P   D +  + +S        I +          ++    L  
Sbjct: 314 LRESPSFAIDLETSSLDPFDCDIVG-ISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKLKE 372

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L D   + +    +FD  VL       V P F T IA+ L      +  L D   + LG
Sbjct: 373 ILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPYFDTMIAAYLLEPNEKKFNLDDLALKFLG 432

Query: 129 INISKAQQSSDWSADDL---------SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             ++  Q+   +S   L          ++   Y+  D    + L    + KL      ++
Sbjct: 433 YKMTSYQELMSFSF-PLFGFSFADVPVEKAANYSCEDADITYRLYKTLSLKLHEADLENV 491

Query: 180 -ATSCCNFLMDRAELDLLG 197
                   +   A ++L G
Sbjct: 492 FYKIEMPLVNVLARMELNG 510


>gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
 gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
          Length = 920

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKRE 76
             +++DTET         L  +  S        + I A ++    +V +      +E   
Sbjct: 348 KILSLDTETTSTNAMEAELVGLSFSVAPHQAFYVPIPANREQTIKIVNLFKPAYENEAIL 407

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           K+    ++D+ VL          +F T IA  L +    +H +    +  L    ++I  
Sbjct: 408 KVGQNIKYDMEVLSRYGIELKGNLFDTMIAHYLLQPEL-RHNMDYMAEVYLRYQTVHIEE 466

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCC 184
                 K Q+    +  DL+   + +YA  D      L+     KL+      L      
Sbjct: 467 LIGPRGKGQK----NMRDLAPNDIYEYACEDADITLQLKNILEPKLKEREVDQLFYQMEM 522

Query: 185 NFLMDRAELDLLG 197
             +    ++++ G
Sbjct: 523 PLVRVLTQMEMNG 535


>gi|291403202|ref|XP_002717830.1| PREDICTED: exonuclease 3'-5' domain containing 1 [Oryctolagus
           cuniculus]
          Length = 558

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 25/144 (17%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G++   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 173 KLCWLQVASNSRVYLFDIFLLGRRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 230

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGINISKAQQS---------- 137
           + +  VF T++A     S  T  +       L+++L   L +   K              
Sbjct: 231 IMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVA-PKHLSFLEERQKLIQE 289

Query: 138 -SD-WSADDLSDEQLQYAASDVVH 159
             D W    LS   L+  A +  +
Sbjct: 290 NPDVWFTRPLSPSLLKILALEATY 313


>gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 917

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 77/199 (38%), Gaps = 29/199 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM------LV 71
            ++VDTET    P    L  +  S  + T   + +    +  Q  + NL  +      ++
Sbjct: 341 VLSVDTETTSPNPAMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNLDEVREHLGPVL 400

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
             +  K+    ++D+ VL    G  +  + F T +AS + R    +H + D  KE L  N
Sbjct: 401 SSQVPKVGQNIKYDLIVLENH-GFVLNNIQFDTMLASYVLRPEGRRHNMDDLAKEFLNYN 459

Query: 131 I----------SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
                       K ++ +D     +  EQ+ +YAA D      L   F + ++  G   +
Sbjct: 460 TITYEDLVGTGKKKKELTD-----IDPEQVAEYAAEDADVTFRLYQIFRKSIKDSGVEPI 514

Query: 180 ATS-CCNFLMDRAELDLLG 197
                   +   A+++  G
Sbjct: 515 LREMEMPLISVLAKMEKTG 533


>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 923

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 26/203 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +   A A DTET GL      +  V  +  +G    + +A    +AP           L
Sbjct: 340 LKAAKAFAFDTETDGLDYMTANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRDWVLAQL 399

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  + KI    +FD A +   +G+ ++ + F T + S +  +   +H +      
Sbjct: 400 KPLLEDPNQAKIGQNLKFD-ASIVARYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALR 458

Query: 126 LL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGR 176
            L    I+  +           L+  Q+       YAA D      L      K++   +
Sbjct: 459 YLEHKNISFEEIAGK---GKKQLTFNQIDLAQAGPYAAEDADITLRLHNALYPKVEADEK 515

Query: 177 SDLATS--CCNFLMDRAELDLLG 197
                       +   + ++  G
Sbjct: 516 LKHVFETIEMPLVPVLSRMERTG 538


>gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48]
 gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Pseudomonas entomophila L48]
          Length = 922

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET GL  ++  +  +  +        + +A   + AP           L
Sbjct: 337 LRQAPLFAFDTETTGLDAQQASIVGLSFAVEPNEAAYVPLAHDYEGAPAQLDREAVLLAL 396

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLK 124
             +L D  + KI    ++DI +L       +     + T + S +  +   +H +    +
Sbjct: 397 KPLLEDPAKGKIGQNAKYDINILANGSPAILMRGVAYDTMLESYVLDSTATRHDMDSLAQ 456

Query: 125 ELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172
           + L       +  +   A  L+  Q+       YAA D      L      +L 
Sbjct: 457 KYLDHTTIGFEDIAGKGAKQLTFNQIPLEKAGPYAAEDADVTLRLHHALQARLA 510


>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
 gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
          Length = 955

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 31/172 (18%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRI-------AAGQKNAPNLVGMLVD 72
            IA DTET GL P+  +L  +    G+    +  I I        + +K    L  +L +
Sbjct: 366 PIAWDTETTGLNPQTAKLVGISCCWGEEVNNIAYIPIEHKEGEQLSKEKVLEKLRPILEN 425

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKE------ 125
           +   K+F   +FD  VL    G+++   VF T +AS +       H L    K+      
Sbjct: 426 KCYPKVFQNAKFDRLVLLNQ-GIQLNGVVFDTMLASYVINP-DKSHKLSSLCKQYLTNIS 483

Query: 126 ---LLGINISKAQQSSDWSADDLSDEQL-QYAASDV--VHLH--ALRLQFTE 169
               L + I+K Q  +D     L   Q+  Y   D     L    L+ +  E
Sbjct: 484 SQDYLELKINKQQTIAD-----LDITQVANYCGMDAYSTFLLVKPLKKRLAE 530


>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
          Length = 929

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D  A D ET  L      +  +  +   G    + +A    +AP           L
Sbjct: 346 LQSADVFAFDLETDSLDTLSANIVGIAFAVAPGKAAYLPVAHDYLDAPPQLDRAAVLKQL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D K  K+    ++D  VL     + +  + F T + S    +   +H +      
Sbjct: 406 KPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIKFDTMLESYCLNSVGGKHDMDSLAAR 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            L       ++ +      L+  Q+       YAA D      L LQ   KL++ 
Sbjct: 465 WLNHKTVTFEEIAGKGKYQLTFNQIALEQAAHYAAEDADVTLQLHLQMWPKLEQE 519


>gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
 gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
          Length = 893

 Score = 61.2 bits (148), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 18/198 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69
            + V + A+D ET  L P    +  + +S    T   I +                L  +
Sbjct: 314 LKEVPSFALDLETSSLDPFNCEIVGISVSFKPKTAYYIPLHHRNAQNLDETLVLSKLKEI 373

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D   + +    ++D  VL       V P F T IA+ L      +  L+D   + LG 
Sbjct: 374 LEDPSSKIVGQNLKYDYKVLMVKGISPVYPHFDTMIAAYLLEPNEKKFNLEDLSLKFLGY 433

Query: 130 NISKAQQSSDWSADDL---------SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL- 179
            ++  Q+   +S+  L          D+   Y+  D    + L    + KL      ++ 
Sbjct: 434 KMTSYQELMSFSS-PLFGFSFADVPVDKAANYSCEDADITYRLYKILSMKLHEAELENVF 492

Query: 180 ATSCCNFLMDRAELDLLG 197
                  +   A ++L G
Sbjct: 493 YRIEMPLVNVLARMELNG 510


>gi|327259620|ref|XP_003214634.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
           [Anolis carolinensis]
          Length = 437

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 25/147 (17%)

Query: 35  RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFY 91
           R  +L  +Q++             G +   N L  +L D+   K+ H  R   D   L +
Sbjct: 110 RYGKLSWLQVATRSQVFLFDIFLLGPRVFKNGLQIILEDQHILKVIHDCRWLSD--CLSH 167

Query: 92  TFGVRVRPVFCTKIASRL-----TRTYTNQ--HGLKDNLKELLGINISKAQQSSD----- 139
            +G+ +  VF T++A  +     T  +       L++ L E LG++  K     D     
Sbjct: 168 QYGIELTNVFDTQVADVMQFSVETGGFLPLRISNLQECLIEYLGMS-RKDVSFMDLRQRE 226

Query: 140 -------WSADDLSDEQLQYAASDVVH 159
                  W    LS   L   A + V+
Sbjct: 227 IERNPDVWFMRPLSPALLNVLALETVY 253


>gi|321455674|gb|EFX66801.1| hypothetical protein DAPPUDRAFT_331718 [Daphnia pulex]
          Length = 224

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 59/195 (30%), Gaps = 50/195 (25%)

Query: 16  AARYVDAIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLV-- 67
           A      + VD E               +  ++Q++  D    +   +  +  + +++  
Sbjct: 10  ALGKSTVVGVDIE-------WPPFGTLAKATVLQIATHDKIFLLDIFSLREDKSCSVINS 62

Query: 68  -----GMLVDEKREKIFHYGRFDIAVLFYTF------------GVRVRPVF---CTKIAS 107
                 +  +    K+ +  + D+ VL  +              + ++ ++    TK  S
Sbjct: 63  QQLIGDLFGNRHILKLGYGLKEDLHVLSRSLPGIGDVSKSIVNWIDIKNLWSNIETKYPS 122

Query: 108 RLTRTYTNQHGLKDNLKELLGINI------------SKAQQSSDWSADDLSDEQLQYAAS 155
            L     N     D   +     +             K +Q SDW    L   Q  YAA 
Sbjct: 123 FLPPAVLND---GDTCSQETHKGLSGLVKLLLGLPLDKKEQFSDWQKRPLRTSQFIYAAL 179

Query: 156 DVVHLHALRLQFTEK 170
           D   L  +     ++
Sbjct: 180 DAFCLLEVYDYLQKR 194


>gi|312210218|emb|CBX90305.1| hypothetical protein [Leptosphaeria maculans]
          Length = 799

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 38/205 (18%)

Query: 4   IRVHEG-DIPAECAARYVD--AIAVDTETLGLMPR------RDRLCIVQLSPGDGTVDI- 53
           I   +  D+    A R++D   +  D E     P       +  + ++QL+  D      
Sbjct: 229 IHYCKSKDVAERVAKRFLDQKVLGFDIE---WKPFGIPSSIKQNVSLIQLACEDRIALFH 285

Query: 54  IRIAAG----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
           I +  G    +   P+L  +L      K+    + D + L    G++ R VF       L
Sbjct: 286 ISLFEGTAVEELMPPSLKAVLESPDIYKVGVAIKGDFSRLARYLGIQARGVFELSRLHNL 345

Query: 110 TRTYT--------NQHGLKDNLKELLGINISKAQ------------QSSDWSADDLSDEQ 149
            + Y            GL   + + L + + K +            + SDWS   L   Q
Sbjct: 346 VQYYEADPKQVNNRLVGLAAQVHQHLQLPLYKGEPLDDDPETSSSVRESDWSL-PLGFSQ 404

Query: 150 LQYAASDVVHLHALRLQFTEKLQRL 174
           + YAA+D      L      K  +L
Sbjct: 405 IHYAAADAYAGFRLYDALERKRAQL 429


>gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 931

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 21/169 (12%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGMLVDE 73
             +A DTET  L PR  +L  +     +G +  + I          +    +L  +  D 
Sbjct: 362 GIVAWDTETTSLDPRDAQLVGIGCCWSEGDIAYLPIGHRQGSNLDWELVKQSLQPLWEDP 421

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            R K     ++D+++     G+R++ + F   +AS +       H L D     L +   
Sbjct: 422 NRPKSLQNCKYDLSIF-RAHGIRLQGIQFDPMLASYVLDPEA-SHNLADLAATHLNLPTT 479

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                + K Q  +D     +S    +Y  +D    + L    TEKLQ+ 
Sbjct: 480 SYKKLLGKEQSIAD---IPISKV-AEYCGTDAYCAYRLVPILTEKLQKT 524


>gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ]
 gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ]
          Length = 908

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +    IA D+ET  L  ++  L  +  +        I +A      P+          L
Sbjct: 325 LKQAGLIAFDSETTSLDAQQAELVGLSFAVAPLEAAYIPLAHSYMGVPDQLDRDAVLAAL 384

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  R K+  + ++D+ VL +  G+ VR V + T + S +  +   +H +     +
Sbjct: 385 RPILEDPARAKVGQHAKYDMNVLAHY-GIEVRGVAYDTMLESYVLDSTATRHDMDSLALK 443

Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            LG       +  D     A  L+ +Q+       YAA D      L     +KL+ 
Sbjct: 444 YLGQG---TIRFEDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQCLWQKLEA 497


>gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197]
 gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617]
 gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197]
 gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617]
          Length = 928

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T++ S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTRLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 518


>gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU]
 gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
 gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Acinetobacter baumannii ACICU]
 gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
 gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
 gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
          Length = 923

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        + +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQVLAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 406 PILENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+ 
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517


>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
 gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
          Length = 928

 Score = 61.2 bits (148), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 68/205 (33%), Gaps = 23/205 (11%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL-- 66
            ++ A  A++   +   DTET G       L  +  S   G    +  +A QK A  L  
Sbjct: 345 NELLALLASQ--KSFCFDTETTGTDANCCELVGLSFSVEKGQAWYVPASADQKEAHALVQ 402

Query: 67  --VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +  +    KI    +FDI VL +        +F T +A  L    T +HG+    +
Sbjct: 403 QFKPVFENPAIGKIGQNLKFDILVLSWYDVKVAGELFDTMLAHYLIDPET-RHGMDVLSE 461

Query: 125 ELLGINISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR 173
             LG                    QL            YAA D      L+  F   L +
Sbjct: 462 NYLGYTPVSITT----LIGPKGKGQLNMRDVDPKTVSDYAAEDADITLQLKEIFEPMLIK 517

Query: 174 LGRSDLATS-CCNFLMDRAELDLLG 197
           +    LA       +    +++ +G
Sbjct: 518 VEADKLAHEVEFPLVPVLVDMERVG 542


>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
 gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
          Length = 926

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 17/201 (8%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           +I  ++ ++       +  +  A DTET  L      +  V  +        +       
Sbjct: 328 SIITNQAELDEWVERLKASELFAFDTETTSLRYMAAEVVGVSFAVQPFEAAYVPFCHDYM 387

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111
            AP           L  +L     +K+    ++D  VL             T + S +  
Sbjct: 388 GAPEQLDRDTVLAQLKPLLESPDHKKVGQNLKYDKNVLANHDICLEGIAEDTMVQSYVLN 447

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165
           + +++H +       LG   +  +  +   A  L+  QL+      YAA D      L  
Sbjct: 448 SVSSRHNMDALALHYLGEETTTFESLAGKGAKQLTFNQLELDKAGPYAAEDADITLRLHQ 507

Query: 166 QFTEKLQRLGRSDLATSCCNF 186
               +L   G+        + 
Sbjct: 508 ALRPQLAATGKLQSVYEDIDL 528


>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
 gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
          Length = 928

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 43/193 (22%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCI------VQLSPGDGTVDIIRIAAGQKN------ 62
            AA+    +AVDTET  L       C+      + L+        I +  G  +      
Sbjct: 338 AAAQAEGVVAVDTETDMLD------CVSCGLVGISLAVAPNAACYIPVGHGGTDMFAERP 391

Query: 63  --------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY- 113
                      L  +L D+   K+    ++D+ VL    G+ V P   T + S       
Sbjct: 392 AQLDKALVLAKLKPLLEDDAVLKVGQNLKYDMTVLRRH-GIEVVPYDDTIVMSFDLEAGK 450

Query: 114 -TNQHGLKDNLKELLGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHA 162
             + HG+ +  ++ LG          D          ++   L     +YAA D      
Sbjct: 451 SLSGHGMDEAARQHLGHE---CISFKDVVGTGKNQISFAEVPLPRA-TEYAAEDADVTLR 506

Query: 163 LRLQFTEKLQRLG 175
           L  +F  ++   G
Sbjct: 507 LWKRFKARIANEG 519


>gi|291614659|ref|YP_003524816.1| 3'-5' exonuclease [Sideroxydans lithotrophicus ES-1]
 gi|291584771|gb|ADE12429.1| 3'-5' exonuclease [Sideroxydans lithotrophicus ES-1]
          Length = 220

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 30/164 (18%)

Query: 21  DAIAVDTET--------LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
             +  DTE+        +   P      +VQ +  D    + ++   +   P LV +L  
Sbjct: 45  GIVGFDTESRPTFVTGDVSEGPH-----VVQFALHD-KAYLFQVHR-EDGLPFLVELLQS 97

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI- 131
           ++  K+    + D   +F   GVR   V           T  N  G +  +     + + 
Sbjct: 98  DEVIKVGFGLKSDSGHIFNKLGVRFGAVVD-------LNTVFNMKGYRKEMGARAAVGLV 150

Query: 132 -------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                  SK   ++DWS   L+ +Q+ YAA+D      +     
Sbjct: 151 FNQRFAKSKKITTTDWSQPRLTHQQILYAANDAYAALKVLEALN 194


>gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586]
 gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586]
          Length = 929

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 20/178 (11%)

Query: 14  ECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------ 65
           +  AR       + DTET GL      L  + L+   G    + +     +AP       
Sbjct: 342 DWIARINAAGLFSFDTETDGLDTLTANLVGISLAIKPGEAAYLPLGHDYLDAPTQLDRDT 401

Query: 66  ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120
               L  +L +E   KI    +FD  V+    G+ +R + F T + S +  +   +H + 
Sbjct: 402 VLAQLKPLLENEAIGKIGQNLKFDKGVMARY-GIDLRGIVFDTMLESYVLDSVAGRHDMD 460

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172
              +  L       ++ +    + L+  Q+       YAA D      L      KL+
Sbjct: 461 SLSERYLQHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRLHETLWAKLE 518


>gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341]
 gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341]
          Length = 938

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D  A DTET  L      L  V  +  +G    I +A    +AP           L
Sbjct: 355 LQQADLFAFDTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQL 414

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 415 KPLLEDENKAKVGQNLKYDASVIARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 473

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  + +  +++  + + 
Sbjct: 474 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQ 533

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 534 VYREIEMPLVPVLSRIERTG 553


>gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
 gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
          Length = 923

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        I +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQVLAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+ 
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517


>gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9]
 gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9]
          Length = 908

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 22/199 (11%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  + +A+DTET  L   + RL  + LS   G    I +A   +   N          + 
Sbjct: 329 KQANLVALDTETNSLDQLKTRLVGISLSTDIGKAWYIPVAHQVELGCNQLMKAEVLEAMR 388

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
             L  E++ KI    ++D+ V     G+ ++ +   T + + +  T   + GL+    + 
Sbjct: 389 SWLESEQKTKILQNAKYDMHVFANE-GIVLKGIKHDTMVLAYVIDT-NQRVGLEALSLKY 446

Query: 127 LG-INIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR-LGRSD 178
           L    +S      K  ++  +    L     QYA  D      L  +   KL+   G   
Sbjct: 447 LNRKGLSYEEICGKGAKAITFDYVPLDQA-TQYACEDADFTFHLLTELLPKLEGFEGLKF 505

Query: 179 LATSCCNFLMDRAELDLLG 197
           +       L    +++ +G
Sbjct: 506 IYDLEMQVLQVLFDMERVG 524


>gi|308455848|ref|XP_003090418.1| hypothetical protein CRE_16505 [Caenorhabditis remanei]
 gi|308264027|gb|EFP07980.1| hypothetical protein CRE_16505 [Caenorhabditis remanei]
          Length = 591

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 20/135 (14%)

Query: 53  IIRIAAGQ--KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
           I  +A+           G+L  EK  K+ H  R   ++L + + V +R VF T++A  L 
Sbjct: 365 IFDLASSDVIILESGFKGILESEKVVKVIHDARRVASLLAHKYAVHMRNVFDTQVAHSLL 424

Query: 111 RTYTNQHGLKDN-------LKE--------LLGINISKAQQSSDWSADDLSDE-QLQYAA 154
           +       L +        L+         L  +   K  QS +W    +++E QL    
Sbjct: 425 QHDKFGKSLHEMRPISFINLQRVYYPQSIMLSDVTPRKMSQSPNWGVRPITEEFQLT-IV 483

Query: 155 SDVVHLH-ALRLQFT 168
            +   L  AL    +
Sbjct: 484 EEAHCLLSALYQALS 498


>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 39/203 (19%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------- 56
           + + D+           A A+D ET  L P    L  + L+        + +        
Sbjct: 312 LTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQ 371

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              ++    L   L   ++++  H+G++D  VL      R    F T IA+ L     N 
Sbjct: 372 LDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVLERAGFPRPHIDFDTMIAAYLLGE--NA 429

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSD------EQL-----------QYAASDVVH 159
            GLK+     LG           W  +++++      +QL           QYA +DV  
Sbjct: 430 VGLKELAFTKLG-----------WEMEEITELIGRGKKQLTMDRAEIARVTQYACADVEA 478

Query: 160 LHALRLQFTEKLQRLGRSDLATS 182
            + L      +L+   +  L T 
Sbjct: 479 TYRLVEVLRPQLEAHNQLRLFTE 501


>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
 gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
          Length = 905

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 65/206 (31%), Gaps = 30/206 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----------APNL 66
            +    +A+DTET  L   + RL  + L+   G    I +A    +             L
Sbjct: 326 LQNASLVALDTETTSLDQMQARLVGLSLAVEPGVACYIPVAHRGPDGATQLPKAEVLARL 385

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
              L D  R K+ H+ ++D  V     G+ +  +   T + + +  ++    GL D  + 
Sbjct: 386 KPWLEDASRAKLLHHAKYDAHVFANE-GIALAGITDDTMLQAYVLESH-RGVGLNDLAQR 443

Query: 126 LLGINISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR- 173
            LG +        D        +Q+            YAA D      L       +   
Sbjct: 444 YLGRS---GISYEDLCGK--GAKQIGFDEVAVDKAGHYAAEDADFTLQLHHVLRPMVAAN 498

Query: 174 LGRSDLATSCCNFLMDRAELDLLGWE 199
            G   +             ++  G +
Sbjct: 499 EGLDRIYQLEIKVSAVLTTIERNGVK 524


>gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2]
 gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2]
          Length = 928

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYVPVAHDYLDAPDQIARDRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE   K+    ++D  +L    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDENAHKVGQNLKYDRGILANY-GIELRGITFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 518


>gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
 gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
          Length = 917

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 39/203 (19%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------- 56
           + + D+           A A+D ET  L P    L  + L+        + +        
Sbjct: 312 LTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQ 371

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              ++    L   L   ++++  H+G++D  VL      R    F T IA+ L     N 
Sbjct: 372 LDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVLERAGFPRPHIDFDTMIAAYLLGE--NA 429

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSD------EQL-----------QYAASDVVH 159
            GLK+     LG           W  +++++      +QL           QYA +DV  
Sbjct: 430 VGLKELAFTKLG-----------WEMEEITELIGRGKKQLTMDRAEIARVTQYACADVEA 478

Query: 160 LHALRLQFTEKLQRLGRSDLATS 182
            + L      +L+   +  L T 
Sbjct: 479 TYRLVEVLRPQLEAHNQLRLFTE 501


>gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 923

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        I +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQVLAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+ 
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517


>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 39/203 (19%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------- 56
           + + D+           A A+D ET  L P    L  + L+        + +        
Sbjct: 312 LTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQ 371

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              ++    L   L   ++++  H+G++D  VL      R    F T IA+ L     N 
Sbjct: 372 LDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVLERAGFPRPHIDFDTMIAAYLLGE--NA 429

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSD------EQL-----------QYAASDVVH 159
            GLK+     LG           W  +++++      +QL           QYA +DV  
Sbjct: 430 VGLKELAFTKLG-----------WEMEEITELIGRGKKQLTMDRAEIARVTQYACADVEA 478

Query: 160 LHALRLQFTEKLQRLGRSDLATS 182
            + L      +L+   +  L T 
Sbjct: 479 TYRLVEVLRPQLEAHNQLRLFTE 501


>gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5]
 gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase
 gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5]
          Length = 595

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)

Query: 23  IAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           +AVDTET GL    D     +VQ    D    ++ +  G     + V + +   +  +  
Sbjct: 38  LAVDTETTGLDIYSDTFECRLVQFGTQDE-AWVVPVELGDVFIED-VRIAIGALKRMVLQ 95

Query: 81  YGRFDIAVLFYTFGVRVRPVF----CTKIASRLTRTYT-NQHGLKDNLKELLGINISKAQ 135
              FD+ VL   FG+ +  ++     T+I ++L         G   +L+EL+   IS+ Q
Sbjct: 96  NASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVDPRPFEAGGFGHSLEELIAKFISEDQ 155


>gi|255085362|ref|XP_002505112.1| predicted protein [Micromonas sp. RCC299]
 gi|226520381|gb|ACO66370.1| predicted protein [Micromonas sp. RCC299]
          Length = 514

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 19/130 (14%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---------- 93
           LSP       +  +A  K  P L  +L D     +      D+  +   F          
Sbjct: 150 LSPPTPNRPYVPGSAVTKFPPLLARLLHDPNVLPVGQGVAEDLRQIARCFPEVTNPGVPK 209

Query: 94  -----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE--LLGINISKAQQSSDWSADDLS 146
                G R        +AS +        GL    +      ++  K+ Q SDWS   L+
Sbjct: 210 GGAEPGCRRGAFVD--LASIVDFYDVPASGLGRLAQHCGFSDVSKPKSVQVSDWSRTPLT 267

Query: 147 DEQLQYAASD 156
           D Q++YAA D
Sbjct: 268 DAQVRYAAQD 277


>gi|114653643|ref|XP_001140882.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 506

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 44  LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   ++R+      G+     L+ +L D    K+      D + L   +G+ VR 
Sbjct: 1   MASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRG 60

Query: 100 VFCTKIASRLTRTYT--NQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQL----- 150
               +  +   R     N   LK   + +L   + K+   + S+W A+ L+++Q+     
Sbjct: 61  CLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQIPLISD 120

Query: 151 -----QYAASDVVHLHALRLQF 167
                 YAA D     AL L  
Sbjct: 121 FSLQVIYAARDAQISVALFLHL 142


>gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
 gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
          Length = 1041

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 45/215 (20%)

Query: 16  AARYVDAIAVDTETLGLMPRR-DRLCI-VQLSPGD------GTVDIIRIAAGQKNAPN-- 65
           + R     A DTET     R+ D + +   ++PG+      G    +         P   
Sbjct: 449 SLRDAGHFAFDTETTSEDQRKADLVGLSFAMAPGEAYYIPVGHTTTVDGQEPGTQLPLSH 508

Query: 66  ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120
               L  +  D    K  H  ++DIAV+    G++V  + F + +A+ L        GLK
Sbjct: 509 VLVQLKPIFEDASIGKYMHNAKYDIAVMLRY-GIQVEGLSFDSMLAAYLIEPGRRGLGLK 567

Query: 121 DNLKELLGINISKAQQSSDWSADDLSD-----------EQL------QYAASDVVHLHAL 163
           +   + L I ++            +++            Q+       YA SD      L
Sbjct: 568 EQAFQRLSILMT-----------PITELIGSGSKIISMAQVPIRRAADYAGSDADMTLRL 616

Query: 164 RLQFTEKLQRLGRSDL-ATSCCNFLMDRAELDLLG 197
            +   + LQ+    DL        +    +++L G
Sbjct: 617 VVPLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYG 651


>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 930

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 58/177 (32%), Gaps = 24/177 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +    IA DTET  L      L  V     +G    + +A    +AP           L
Sbjct: 347 LQKAQLIAFDTETTSLNYMDAELVGVSFCIEEGEAAYVPVAHDYPDAPTQLSREFVLDAL 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L      K+  + ++D  VL     + +  + F T + S +  +   +H +      
Sbjct: 407 KPILESSNIIKVGQHIKYDKNVLANY-DITLNGIGFDTMLESYVLNSTAQRHDMDSLALA 465

Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            LG    K     D     A  L+  Q+       YAA D      L      KL+ 
Sbjct: 466 YLGH---KTIHFEDIAGKGAKQLTFNQIALEEAGPYAAEDADITLRLHNTIWAKLKE 519


>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
 gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
          Length = 933

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 12/125 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET GL      L  +  +   G    + +A    +AP           L
Sbjct: 350 LKKANVFAFDTETDGLDTLSANLIGLSFAIAPGEAAYLPVAHDYLDAPAQLDRASVLERL 409

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    +FD+ VL    G+ +R + + T + S +  +   +H + +    
Sbjct: 410 KLLLEDEKVLKVGQNLKFDMGVLARY-GINLRGIAYDTMLESYVLDSVGGRHDMDNLADR 468

Query: 126 LLGIN 130
            LG  
Sbjct: 469 YLGHK 473


>gi|319792549|ref|YP_004154189.1| 3'-5' exonuclease [Variovorax paradoxus EPS]
 gi|315595012|gb|ADU36078.1| 3'-5' exonuclease [Variovorax paradoxus EPS]
          Length = 206

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           +VQ S  D    + ++   + N P +  ++   + +K+      D+ ++     +    V
Sbjct: 77  VVQFSTRD-RAWLFQLHRTECN-PVVAALIASTELKKVGFGLSTDLTLIRNRLNIEPGAV 134

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAASDV 157
           +   I +   R  Y    G+K  +  +      K+    +S+W+   L++ Q++YAA+D 
Sbjct: 135 YD--IDNEFRRRGYRKSVGVKTAVALVFDRRFMKSRKATTSNWANKQLTESQIRYAANDA 192

Query: 158 VHLHALRLQFTE 169
                +      
Sbjct: 193 YASIRVYDALFA 204


>gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
 gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
          Length = 923

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        + +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQILAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+ 
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517


>gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100]
 gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100]
          Length = 879

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 27/201 (13%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-REKIF 79
             +A DTET GL  +  ++        +     + +A         + M   +K  EKI+
Sbjct: 317 SIVAFDTETTGLDTKEAKIVGFSFCSHESEAFYVPLAHDYLGVCKQISMQAAKKGIEKIY 376

Query: 80  ------HYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
                 H  ++D  ++   F +   +    T I + L +  + +  +    K +      
Sbjct: 377 QSTVIGHNLKYDFEIIKNNFNLLPPKNYADTMILAWL-KEPSLRVNMDVLAKRIFDYETL 435

Query: 131 -----ISKAQQSS--DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                + K +  +  D       ++  +YAA D        L F + L++    +LA   
Sbjct: 436 HFEDLVKKGESFAGVD------VEKACKYAAEDAYITLRFYLYFLKNLEKS-LLELAQKS 488

Query: 183 CCNFLMDRAELDLLGWENVDI 203
              F+     ++  G + +DI
Sbjct: 489 EFEFIKVLIMMENNGIK-LDI 508


>gi|308482748|ref|XP_003103577.1| hypothetical protein CRE_28761 [Caenorhabditis remanei]
 gi|308259998|gb|EFP03951.1| hypothetical protein CRE_28761 [Caenorhabditis remanei]
          Length = 591

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 20/135 (14%)

Query: 53  IIRIAAGQ--KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
           I  +A+           G+L  EK  K+ H  R   ++L + + V +R VF T++A  L 
Sbjct: 365 IFDLASSDVIILESGFKGILESEKVVKVIHDARRVASLLAHKYAVHMRNVFDTQVAHSLL 424

Query: 111 RTYTNQHGLKDN-------LKE--------LLGINISKAQQSSDWSADDLSDE-QLQYAA 154
           +       L +        L+         L  +   K  QS +W    +++E QL    
Sbjct: 425 QHDKFGKSLHEMRPISFINLQRVYYPQSIMLSDVTPRKMSQSPNWGVRPITEEFQLT-IV 483

Query: 155 SDVVHLH-ALRLQFT 168
            +   L  AL    +
Sbjct: 484 EEAHCLLSALYQALS 498


>gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 879

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        I +A   +NAP           + 
Sbjct: 302 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQVLAQIK 361

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 362 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 420

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+ 
Sbjct: 421 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 473


>gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii SDF]
 gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii]
          Length = 923

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        + +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQVLAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+ 
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517


>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 934

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 16/174 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L P +  L  + ++   G    +         P           L
Sbjct: 352 LRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGVPVQLDRTQALAQL 411

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 412 APLLTDPAVRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 471

Query: 127 LGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           LG +  K +      A  +   Q+      +YAA D      L      +L   
Sbjct: 472 LGYDTVKYEDVCGKGAKQIPFAQISLEDATRYAAEDADITLRLHRVLGPRLASE 525


>gi|323345482|ref|ZP_08085705.1| 3'-5' exonuclease domain protein [Prevotella oralis ATCC 33269]
 gi|323093596|gb|EFZ36174.1| 3'-5' exonuclease domain protein [Prevotella oralis ATCC 33269]
          Length = 212

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 30/192 (15%)

Query: 4   IRVHEGDIPAECAARY---VDAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVD 52
           I V   D  A+ A  Y    D + VDTET      R         ++ ++Q++  D    
Sbjct: 26  IVVILNDTDAKEAVDYLLSSDILGVDTET------RPTFKKGQIHKVSLLQVATKDICFL 79

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASR 108
                 G  +  ++  +L ++    I   +H    DI  L              + I   
Sbjct: 80  FRLNMIGIND--DVKRLLENKSVPMIGLSWHD---DILALHKRRAFNPGYFIDLQNIVGE 134

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           L         L+     +    ISK QQ ++W AD L+D+Q +YAA+D      L  +  
Sbjct: 135 L---GIKDLSLQKLYANIFHQKISKRQQLTNWDADVLNDKQKEYAATDAWACVMLYNEIM 191

Query: 169 EKLQRLGRSDLA 180
             L++ G  +L 
Sbjct: 192 H-LKQSGDYELV 202


>gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56]
          Length = 452

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 64/202 (31%), Gaps = 38/202 (18%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---------IRIA-------- 57
             AR    +A DTET  L   +  L    ++  D   D          + +A        
Sbjct: 248 ADARDTGLVAFDTETTSLDAMQAELVGFSMAIADNVADPTGTKIRAAYVPLAHKNGVGDL 307

Query: 58  ----------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                       +   P L  +L D    K+    ++D  +L   +G+  +    T + S
Sbjct: 308 LGGGLAENQVPMRDALPRLKALLEDAAVLKVAQNLKYD-YLLMKRYGIETKSFDDTMLIS 366

Query: 108 RLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVH 159
            +    T  HG+    ++ LG      K    S     +++      D    YAA D   
Sbjct: 367 YVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGS--GRANVTFDLVDIDRATHYAAEDADV 424

Query: 160 LHALRLQFTEKLQRLGRSDLAT 181
              L L    +L   G + +  
Sbjct: 425 TLRLWLVLKPRLAAAGLTSVYE 446


>gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92]
 gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92]
          Length = 922

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               +  A DTET  L      L  V  +   G    + +A     AP           +
Sbjct: 340 LSTAELFAFDTETTSLNYMEAELVGVSFAIEPGKAAYVPVAHDYMGAPEQITRETLLEKM 399

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L     +K+  + ++D+ VL    G+ +  + F T + S +  +   +H +      
Sbjct: 400 KPLLESSDHKKVGQHLKYDMNVLARY-GIELTGIEFDTMLESYVLNSTATRHDMDSLADR 458

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            LG+   K +  +      L+  Q++      YAA D      L      +L +
Sbjct: 459 YLGLKTIKFEDIAGKGKKQLTFNQIELEQAAPYAAEDADITLRLHQAINAQLSK 512


>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
 gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
          Length = 951

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 65/194 (33%), Gaps = 38/194 (19%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---------------- 60
            +  D IAVDTET  L P R  L  +  +  +     I +A  Q                
Sbjct: 350 LQQADLIAVDTETDALDPMRANLVGISFALTNSEACYIPLAHKQAVKEMTQTDLFTESEQ 409

Query: 61  ---------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105
                               L  +L +   +K+    ++D+ +            F T +
Sbjct: 410 NAEQFELVKNQLNKETCLAQLKPLLENPSIQKVGQNIKYDLTIFANHHIQLNGVCFDTML 469

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVH 159
            S +  + T +H +    +  LG  + + +  +      ++ +++      +YAA D   
Sbjct: 470 QSYVLDS-TGRHNMGALSERYLGHQVIEFESIAGKGKKQVTFDKIAIAQATEYAAEDADI 528

Query: 160 LHALRLQFTEKLQR 173
              L     ++LQ+
Sbjct: 529 TMKLHQVLWQELQQ 542


>gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900]
          Length = 923

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        + +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQVLAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+ 
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517


>gi|298705698|emb|CBJ28936.1| hypothetical protein Esi_0124_0050 [Ectocarpus siliculosus]
          Length = 955

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 14/152 (9%)

Query: 11  IPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-- 65
           +   C  +  + + +D E   +LG       +  VQLS  DGT    ++  G K   +  
Sbjct: 412 LIDGCQLQG-NVLGLDCEWEPSLGGTTPNP-VSTVQLSLPDGTAYCFQLQRGNKKTTSSN 469

Query: 66  ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +L +    K+      D   L   +G+ V      +  +R     T    L  
Sbjct: 470 FPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETPSRSLAG 529

Query: 122 NLKELLGINISKA--QQSSDWSADDLSDEQLQ 151
               LLG  + K    + S WS+  LSD+Q++
Sbjct: 530 MASSLLGRQLPKDPVIRLSRWSS-PLSDDQVR 560


>gi|288927674|ref|ZP_06421521.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330508|gb|EFC69092.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 209

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 21/174 (12%)

Query: 21  DAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           D + VDTET    P   +     + ++Q+S  D          G    P ++ +L ++  
Sbjct: 48  DILGVDTET---RPSFKKGETHMVSLLQVSTSDVCFLFRLNHIGIT--PAILRLLENKAV 102

Query: 76  EKI---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT-NQHGLKDNLKELLGINI 131
             +    H    D+  L              +    L          L+     L    I
Sbjct: 103 PMVGLSLHD---DMLSLHKRVAFTPGFFIDLQ---DLVGELGIEDLSLQKLYANLFHQKI 156

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
           SK Q+ ++W +D L+D+Q  YAA D      L  +   +L++ G  +L  +  +
Sbjct: 157 SKRQRLTNWDSDVLNDKQKAYAALDAWACINLYKEIL-RLKQSGDYELVINEQD 209


>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
 gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
          Length = 920

 Score = 60.8 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 23/192 (11%)

Query: 23  IAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKR 75
           +++DTET         L   C    +  +     + I   +K A         +  D   
Sbjct: 350 LSLDTETTSTDAIEAELVGLC---FAVEEHKAFYVAIPNDRKQALQYVNIFKSVYEDPSI 406

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG------- 128
            KI    ++D  VL          +F T +A  + +    +H +    + LL        
Sbjct: 407 LKIGQNIKYDYEVLKNYGVTLQGKMFDTMLAHYVLQPEL-RHNMDYMAETLLNYKTIHIE 465

Query: 129 --INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCN 185
             I      Q S    D   ++  +Y A D      LR     KL+ +    L       
Sbjct: 466 ELIGAPGKHQKS--MRDIAPEDAYEYGAEDADITLQLRNVLEPKLKEVAMEALFWDIETP 523

Query: 186 FLMDRAELDLLG 197
            +   A+++L G
Sbjct: 524 LIPVLADMELNG 535


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 20/182 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLV 71
                 +I  DTET G    +  L  +  S   G    + +                +  
Sbjct: 358 LLSTQKSICFDTETTGTDANQCELVGLSFSIKKGEAWYVPVPVNCDEIQPIVDEFKPIFE 417

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG--- 128
           +    KI    +FD+ VL Y        +F T +A  +    T +H +    +  LG   
Sbjct: 418 NPAIGKIGQNIKFDMLVLKYYNVTMQGELFDTMLAHYIIDPDT-RHNMDILAENYLGYSP 476

Query: 129 INIS-------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           ++I+       K Q +      D+  E++  YAA D      L+  F  KLQ++G + LA
Sbjct: 477 VSITTLIGAKGKGQGT----MRDVEIEKIKDYAAEDADVTLQLKEVFEPKLQQVGGTKLA 532

Query: 181 TS 182
           T 
Sbjct: 533 TD 534


>gi|195444614|ref|XP_002069948.1| GK11793 [Drosophila willistoni]
 gi|194166033|gb|EDW80934.1| GK11793 [Drosophila willistoni]
          Length = 598

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 8/159 (5%)

Query: 18  RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +    +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L D+  
Sbjct: 75  QRFQVLGFDCEWITVGG-SRRP-VALLQLSSQYGLCALFRLCCMKQIPKDLRELLEDDAI 132

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    + D   L + +GV V      +  + +        GL       L   + K  
Sbjct: 133 VKVGVAPQADAMKLSHDYGVGVASTLDLRFLAVMAGHKAE--GLGKLSHTHLNFVLDKNW 190

Query: 136 Q--SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +   S+W A  L + QL YAA+D +   A+  +    L+
Sbjct: 191 RLACSNWEAKQLEEVQLNYAANDALAAVAIFQKLCRDLE 229


>gi|123470108|ref|XP_001318262.1| HRDC domain containing protein [Trichomonas vaginalis G3]
 gi|121901016|gb|EAY06039.1| HRDC domain containing protein [Trichomonas vaginalis G3]
          Length = 443

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 24/145 (16%)

Query: 28  ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA 87
           E   +   R   C++ L      + II +   + N   L  +L +    K+F    FD  
Sbjct: 186 EIHRIRTYRPYPCLLTLYSPTYGLFIIDLMKLRFNLDPLKEILQNPDYVKVF----FDPN 241

Query: 88  V---LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS-----SD 139
           +   L  + G+ + P         L+ +Y         + + +   +++ Q+S      D
Sbjct: 242 IYDLLVESCGIFISPSID------LSLSYP-----GKTIDQCIK-ELNEEQESLQNIVVD 289

Query: 140 WSADDLSDEQLQYAASDVVHLHALR 164
           W    L+      A   V+HL  L 
Sbjct: 290 WRIRPLTKFMESTAIEGVLHLPHLA 314


>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
 gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
          Length = 933

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 68/188 (36%), Gaps = 19/188 (10%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--- 64
             ++     A+  + I  DTET  +     ++  +  +        I  +   + A    
Sbjct: 350 RAELLEYLLAQ--EEICFDTETTDIDALDAQIVGLSFAYRPREAFYIPFSPKFEEAKAVL 407

Query: 65  -NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDN 122
                +  +E   K+    ++D+ +L    GV V+  ++ T +A  +      +HG+   
Sbjct: 408 IEFKPLFENENIRKVAQNIKYDLTILATY-GVEVKGEIYDTMLAHYILEP-DQRHGMDYL 465

Query: 123 LKELLGIN-------ISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL 174
            +  L          I K ++  +     L  EQ+ +YAA D      L+     ++++ 
Sbjct: 466 AETYLSYKPIPISDLIGKGKKQLNMRDVPL--EQIKEYAAEDADITLQLKHVLDAQIKKT 523

Query: 175 GRSDLATS 182
            +  L   
Sbjct: 524 DQGRLLQE 531


>gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058]
 gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
 gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
          Length = 923

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        + +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQVLAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+ 
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517


>gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
 gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
          Length = 911

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 24/178 (13%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
            +  A DTET  L   + +L  +  +   G    + IA     AP           L  +
Sbjct: 331 AELFAFDTETTSLEYMKAQLVGMSFAVKAGEAAYLPIAHDYPGAPEQLSLEFVMQKLGPI 390

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L DE + K+    ++D +VL    G  +  + F T + S +  +   +H +     + LG
Sbjct: 391 LADENKAKVGQNLKYDKSVLANA-GYELNGIKFDTMLESYVFNSVGTRHDMDSLALKYLG 449

Query: 129 INISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177
               K     D        L+  Q++      YAA D      L      KL+   + 
Sbjct: 450 H---KNISFEDIAGKGKKQLTFNQIELEKAAPYAAEDADITLRLHQVLWPKLEADEKL 504


>gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
 gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
          Length = 928

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YA  D      L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYATEDADVTLQLHLKMWPDLQK 518


>gi|311244960|ref|XP_003121634.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Sus
           scrofa]
          Length = 566

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++          +  G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 172 KLCWLQVATNSRVYLFDILLLGSRAFNNGLQMVLEDKRILKVIHDCRWLSD--CLSHQYG 229

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQSSD-- 139
           + +  VF T++A     S  T  +       L+++L   L I       + + Q+     
Sbjct: 230 ILLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKIAPKYLSFLEERQKRIQEN 289

Query: 140 ---WSADDLSDEQLQYAASDVVH 159
              W    LS   L+  A +  +
Sbjct: 290 PELWFTRPLSPSLLKILALEATY 312


>gi|219120899|ref|XP_002185681.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582530|gb|ACI65151.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 894

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 27/135 (20%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKN-----APNLVGMLVDEKREKIFHYGRF-DIAVLFYTFG 94
           +VQL+  + +  +I++A           P L  +L DE   K    G   D+ +L     
Sbjct: 149 LVQLATPNAS-LVIQLARNNGRHSRACIPILEAVLADEHIIK---AGVQVDLDMLELHQK 204

Query: 95  VRVRPVFCTKIA-SRLTRTYT--------NQHGLKDNLKELLGINISKAQQ--SSDWSAD 143
                   T  A SRL              + GLK   + +LG+N+ K++    S+WS  
Sbjct: 205 WH------TIEARSRLDLGGLLICEDDANRRPGLKRLAESVLGVNLPKSKSLAKSNWSQV 258

Query: 144 DLSDEQLQYAASDVV 158
            LS  Q+ Y+A D  
Sbjct: 259 PLSPAQIAYSARDAW 273


>gi|157820709|ref|NP_001101231.1| exonuclease 3'-5' domain-containing protein 1 [Rattus norvegicus]
 gi|149023013|gb|EDL79907.1| exonuclease 3'-5' domain-like 1 (predicted) [Rattus norvegicus]
          Length = 562

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 172 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 229

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGINIS---------KAQQS- 137
           + +  VF T++A     S  T  +       L++ L   L +            K  Q  
Sbjct: 230 IMLSNVFDTQVADVLQFSMETGGFLPNCISTLQECLIRHLKVAPKYLLFLEERQKQIQEN 289

Query: 138 -SDWSADDLSDEQLQYAASDVVH 159
              W    L    L+  A +  +
Sbjct: 290 PEVWLTRPLPPSLLKILALETAY 312


>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus]
          Length = 923

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 18/172 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+D ET  L  R   +    ++        + +A   +NAP           + 
Sbjct: 346 QNADHFAIDIETTSLDYRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQLNREQILAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F T +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDTMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLK 516


>gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
 gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
          Length = 916

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 19/193 (9%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E  +    A  +     A DTET  L   +  L  +  +   G    + I      AP
Sbjct: 321 LTEEQLDKWLAQLQSAPLFAFDTETTSLDYMQADLVGMSFAVEAGKAAYLPIGHDYLGAP 380

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L DE+R K+    ++D +VL    G+ +  + F T + S +  + 
Sbjct: 381 EQLSKEMVFAKLGPLLADEQRPKVGQNLKYDKSVLARA-GLELNGIKFDTMLESYVLNSV 439

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQF 167
             +H +     + LG      ++ +    + L+  Q++      YAA D      L    
Sbjct: 440 GTRHDMDSLALKYLGHKNISFEEIAGKGKNQLTFNQIELDKAAPYAAEDADITLRLHQML 499

Query: 168 TEKLQRLGRSDLA 180
             KL+   +  + 
Sbjct: 500 WPKLEADEKLKVV 512


>gi|303284465|ref|XP_003061523.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456853|gb|EEH54153.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 161

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 48/140 (34%), Gaps = 14/140 (10%)

Query: 41  IVQLS-----PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95
           +VQL      P      ++R+       P L     D   +K+    R D   +   F  
Sbjct: 23  LVQLCCEGKRPAKPVCILLRLCRAGGMTPALRAFFEDPSIKKVGVQARGDAHKITRDFAF 82

Query: 96  RVRPVFCTKIASRLTRT------YTNQHGLKDNLKELLGINISKAQQS--SDWSADDLSD 147
            V  V   K A    RT            L   ++  LG  + K   +  SDW A  LS+
Sbjct: 83  HVAGVIELK-AHAAERTSSDAAKGPRAFSLAALVEWTLGRALPKTNSARISDWEAPVLSE 141

Query: 148 EQLQYAASDVVHLHALRLQF 167
           EQ +YAA D      +    
Sbjct: 142 EQQRYAALDAFAGLKVYQAL 161


>gi|166367637|ref|YP_001659910.1| 3'-5' exonuclease [Microcystis aeruginosa NIES-843]
 gi|166090010|dbj|BAG04718.1| 3'-5' exonuclease [Microcystis aeruginosa NIES-843]
          Length = 135

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 11/115 (9%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGD-----GTVDIIRIAAGQKNAPNLV-GMLVD 72
           +   + +DTE      +  RL ++Q+           V I+ +          +  +++ 
Sbjct: 19  HFPILWLDTEVADYDSKTPRLSLIQILADSTDLTGERVTILDVLDRPDLTDYFITKIMLV 78

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY---TNQHGLKDNLK 124
           ++ EK+FH   +D   L      +V+ + CT   ++    Y      + LK  ++
Sbjct: 79  DRIEKVFHNASYDCKFLG--GKSQVKKITCTLELAKKVPYYIAPLANYQLKTVVE 131


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
          Length = 998

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRL---CIVQLSP------------------------G 47
            AAR    +A DTET  L P +  L    +  ++                         G
Sbjct: 391 AAAREAGVVAFDTETTSLDPMQAELVGFSL-AIADNGKDASGTDIRAAYVPLTHKTGSGG 449

Query: 48  DGTVDIIRIAAGQ----KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
           D   D I++A GQ    +    L  +L DE   K+    ++D  ++    GV +R    T
Sbjct: 450 DLFSDGIKLAEGQAPFAEALERLKDLLEDEAVLKVAQNLKYDYLLMKRH-GVVMRSFDDT 508

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAAS 155
            + S +       HG+    +  LG      K    S      ++      D+   YAA 
Sbjct: 509 MLISYVLEAGKTTHGMDTLSERWLGHTPIAYKDVTGS--GKSSITFDFVNIDKATAYAAE 566

Query: 156 DVVHLHALRLQFTEKLQRL 174
           D      L +    +L   
Sbjct: 567 DADVTLRLWMALKPRLVSE 585


>gi|302803390|ref|XP_002983448.1| hypothetical protein SELMODRAFT_118353 [Selaginella moellendorffii]
 gi|300148691|gb|EFJ15349.1| hypothetical protein SELMODRAFT_118353 [Selaginella moellendorffii]
          Length = 200

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 54/157 (34%), Gaps = 17/157 (10%)

Query: 22  AIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            +  DTE             R  ++QL        +  I       P L  +L +E   K
Sbjct: 42  VLGFDTEWKPSFERGAVP-GRTAVLQLCLDSSRCYVFHIFHSGI-PPQLQKLLEEETIWK 99

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT---YTNQHGLKDNLKELLGINISK- 133
                  D++ L   +GV V         S L       +    L    +EL    I K 
Sbjct: 100 AGIGISGDVSKLKLDYGVTVTGSVD---LSALANQKLKRSQSWSLSSLAEELTCKVIDKP 156

Query: 134 -AQQSSDWSADDLSDEQLQYAASDV---VHLHALRLQ 166
              +  DW    LS  QL YAA+D    +HL+ +R +
Sbjct: 157 TDIRCGDWELQPLSPAQLSYAATDAFASLHLYQVRNE 193


>gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591]
 gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591]
          Length = 928

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 14  ECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------- 64
           +  AR       + DTET GL      L  + L+   G    + +     +AP       
Sbjct: 341 DWVARINTAGLFSFDTETDGLDTLTANLVGISLAIKPGEAAYLPLGHDYLDAPMQLDRDK 400

Query: 65  ---NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120
               L  +L DE   KI    +FD  V+    G+ +R + F T + S +  +   +H + 
Sbjct: 401 VLAVLKPLLEDESVAKIGQNLKFDKGVMARY-GIDLRGIAFDTMLESYVLDSVAGRHDMD 459

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172
                 L       ++ +    + L+  Q+       YAA D      L      KL+
Sbjct: 460 SLSDRYLQHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRLHETLWAKLE 517


>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
 gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
          Length = 931

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 348 LKAADVFAFDTETDSLDYMVANLVGLSFATQEGVAAYVPVAHDYLDAPQQLDRDWVLEQL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL     + ++ +   T +AS +  +   +H +      
Sbjct: 408 KPILEDDTQAKVGQNLKYDASVLARY-DIELKGIKHDTMLASYVYNSVGGKHDMDSLALR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +      L+  Q++      YAA D      L  +  E + +  +   
Sbjct: 467 FLQHSCISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKA 526

Query: 180 ATSCCNF 186
                  
Sbjct: 527 IYQDIEV 533


>gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
 gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
          Length = 923

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 18/172 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        + +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQLDREQILAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLK 516


>gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002]
 gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002]
          Length = 973

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 64/178 (35%), Gaps = 41/178 (23%)

Query: 22  AIAVDTETLGLMPR----------RDRLCIVQLSPGDGTVDIIRIAAGQKNA-------P 64
            +A DTET GL PR            R          G +  I IA    N         
Sbjct: 381 PVAWDTETTGLDPREVDLVGIGCCWGR--------DPGNIAYIPIAHHNGNQLEKTQIFQ 432

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L  EK  K+F   +FD A+  +        VF T +AS +      +H L D   
Sbjct: 433 ALKPILETEKYPKVFQNAKFDRAIFAHQGISLAGVVFDTMLASYVLHPEM-KHNLTDLSL 491

Query: 125 ELLGINISKAQQSSDWSADDLSDEQL----------QYAASDVVHLHALRLQFTEKLQ 172
             LG  I+K+ +  D     L+ +Q           +Y   DV   + +  +   +L+
Sbjct: 492 RYLGNIIAKSYK--DLG---LTKKQTIADLEISVAAEYCGLDVYTTYLVCQKLKVELK 544


>gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024]
 gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024]
          Length = 923

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 18/172 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        + +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQILVQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLK 516


>gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100]
 gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris]
          Length = 927

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L   +  L  + ++   G    +        AP           L
Sbjct: 345 LRAAGQFAFDTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQALAQL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 405 APLLTDPAVRKLGQHGKYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRY 464

Query: 127 LGINIS-------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           LG +         K  +   ++   L D   +YAA D      L     ++L   
Sbjct: 465 LGYDTVKYEDICGKGAKQIKFAQVSLEDA-TRYAAEDADITLRLHQVLGKRLAAE 518


>gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 923

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 18/172 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        + +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQILAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D  +     G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYDAHIFANH-GIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLK 516


>gi|194206775|ref|XP_001503529.2| PREDICTED: similar to exonuclease 3-5 domain-like 1 [Equus
           caballus]
          Length = 562

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 165 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILKVIHDCRWLSD--CLSHQYG 222

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137
           + +  VF T++A     SR T  +       L+++L   L I       + + Q+     
Sbjct: 223 ILLNNVFDTQVADVFQFSRETGGFLPNCISTLQESLIRHLKIAPKYLSFLEERQKRIREN 282

Query: 138 -SDWSADDLSDEQLQYAASDVVH 159
              W    LS   L+  A +  +
Sbjct: 283 PEVWFTRPLSPSLLKILALEATY 305


>gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 942

 Score = 60.4 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 72/202 (35%), Gaps = 32/202 (15%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR-----------IAAGQKNAPNLVGM 69
             I++DTET    P    L  +  S   G    I            + + +++   L  M
Sbjct: 365 KPISIDTETTSQDPMMAELLGISFSEEPGVAYYIAFSHSESIYSHLLPSAEESLKILKPM 424

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D   +KI    ++D+ VL    G+ ++ + F T +AS L      +H + D   + L 
Sbjct: 425 LEDSNWKKIGQNIKYDLLVLKNY-GIELKGIYFDTMLASYLLNPGERRHNMDDMAVDYLN 483

Query: 129 ---------INISKAQQS---SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                    +   K +Q+    D       D+  +YA  D      L    + K+     
Sbjct: 484 YKTITYEELVGTGKKKQNLYDID------PDKVSEYACEDADITLQLHNVLSPKMDENIH 537

Query: 177 SDLATS-CCNFLMDRAELDLLG 197
             L        L+  A+++  G
Sbjct: 538 KKLFYEMEMPVLLTLADMEFEG 559


>gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
 gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
          Length = 908

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 17/195 (8%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------QKNAPNLVG 68
           + +    I++DTET  L     RL  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDIYTARLIGISISFKEFEGYYIPIEAKGKIYIEKHYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +   + K   I    +FD  +L       + P F T IA+ L  T + +  L    ++ L
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYL 452

Query: 128 GINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                K +   Q +D +  ++S E    Y++ D      L   FT+KL+  G   L    
Sbjct: 453 MHKNIKYEDVIQKND-NFANISLEMATSYSSEDADITFRLFNIFTKKLKEDGLDKLMHEV 511

Query: 183 CCNFLMDRAELDLLG 197
              F     E++  G
Sbjct: 512 EMPFNNVIIEMEENG 526


>gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo]
 gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo]
          Length = 889

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 17/195 (8%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------QKNAPNLVG 68
           + +    I++DTET  L     RL  + +S  +     I I A                 
Sbjct: 317 SLKKAKYISIDTETSSLDIYTARLIGISISFKEFEGYYIPIEAKGKIYIEKHYIIQKFNN 376

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +   + K   I    +FD  +L       + P F T IA+ L  T + +  L    ++ L
Sbjct: 377 LFESNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYL 433

Query: 128 GINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS- 182
                K +   Q +D +  ++S E    Y++ D      L   FT+KL+  G   L    
Sbjct: 434 MHKNIKYEDVIQKND-NFANISLEMATSYSSEDADITFRLFNIFTKKLKEDGLDKLMHEV 492

Query: 183 CCNFLMDRAELDLLG 197
              F     E++  G
Sbjct: 493 EMPFNNVIIEMEENG 507


>gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 564

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 12/146 (8%)

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P L  +L DE   K+    ++D  +L   +G+  R    T + S +    T  HG+ 
Sbjct: 31  DALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETRSFDDTMLISYVLDAGTGAHGMD 89

Query: 121 DNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQ 172
              ++ LG      K    S     +++      D    YAA D      L L    +L 
Sbjct: 90  PLSEKFLGHTPIPYKDVAGS--GKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLA 147

Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197
             G + +        L   A ++  G
Sbjct: 148 AAGLTSVYERLERPLLPVLARMEARG 173


>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14]
 gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
          Length = 923

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 26/203 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +   A A DTET GL      +  V  +  +G    + +A    +AP           L
Sbjct: 340 LKAAKAFAFDTETDGLDYMTANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRDWVLEQL 399

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D K+ KI    +FD A +   +G+ ++ + F T + S +  +   +H +      
Sbjct: 400 KPLLEDPKQAKIGQNLKFD-ASIVARYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALR 458

Query: 126 LL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGR 176
            L    I+  +           L+  Q+       YAA D      L      K++   +
Sbjct: 459 YLEHKNISFEEVAGK---GKKQLTFNQIDLEQAGPYAAEDADITLRLHNTLYPKVEADDK 515

Query: 177 SDLATS--CCNFLMDRAELDLLG 197
            +          +   + ++  G
Sbjct: 516 LNHVFETIEMPLVPVLSRMERTG 538


>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
          Length = 927

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L   +  L  + ++   G    +        AP           L
Sbjct: 345 LRAAGQFAFDTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQALAQL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 405 APLLTDPAVRKLGQHGKYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRY 464

Query: 127 LGINIS-------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           LG +         K  +   ++   L D   +YAA D      L     ++L   
Sbjct: 465 LGYDTVKYEDICGKGAKQIKFAQVSLEDA-TRYAAEDADITLRLHQVLGKRLAAE 518


>gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
 gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
          Length = 936

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVD 72
                + ++DTET  L      L  + +    G    I     + +A      L  +L +
Sbjct: 359 LEKQSSFSIDTETTSLNTFEAELVGISICWKPGEAYFIHFTDKELSAKTFPGKLQDVLEN 418

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
              +K     ++DI VL     VR+ PV F T +AS +      +H L D  K+ L   
Sbjct: 419 PDIKKTGQNLKYDILVLKNHH-VRLAPVGFDTMLASYVINPE-EKHNLDDLAKKHLNHR 475


>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
 gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
          Length = 923

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 21/193 (10%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKRE 76
           + +++DTET         L  +  +  +     + I A ++ A         +  + +  
Sbjct: 351 NILSLDTETTSTTAIDAELVGLSFAVKEKEAFYVAIPANREEALKIVNIFKPLYENPEIL 410

Query: 77  KIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRT--YTNQHGLKDNLKELLGINIS- 132
           K+    ++D  VL    G+ ++  +F T +A  L +   Y N   L +       I+I  
Sbjct: 411 KVGQNIKYDYEVLINY-GIEIQGKMFDTMLAHYLIQPELYHNMDYLAEVFLNYQTIHIEE 469

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                 K Q+    S  DL+   + +YAA D      L+     KL+ +   DL  +   
Sbjct: 470 LIGPKGKNQK----SMRDLAPSDIYEYAAEDADITLRLKNVLESKLKEIDCEDLFWNVEM 525

Query: 185 NFLMDRAELDLLG 197
             +   A +++ G
Sbjct: 526 PLVPVLAHMEMTG 538


>gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 928

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 22/189 (11%)

Query: 5   RVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            +   D   +   +  +A   A DTET  L   +  L  +     +G    + +A    +
Sbjct: 331 TILTQDALDDWLKKLHNAALFAFDTETTSLNYMQAELVGMSFCIEEGEAAYLPLAHDYAD 390

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           AP              +L D+ + K+  + ++D  VL     + ++ + + T + S +  
Sbjct: 391 APEQLDRDSVLALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAYDTMLESYVLD 449

Query: 112 TYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
           +   +H +    +  LG++         K  +   ++   L      YAA D      L 
Sbjct: 450 SVATRHDMDSLAQHYLGLSTVHFEDIAGKGAKQLTFNQIPLEQA-AHYAAEDADITLRLH 508

Query: 165 LQFTEKLQR 173
               +KL +
Sbjct: 509 NHIWKKLNQ 517


>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
          Length = 936

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 22/202 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +     A DTET  L      L  +  +   G    + +     +AP           +
Sbjct: 352 LQSAKCFAFDTETDSLDTLSAHLIGLSFAIEKGKGAYLPLGHNYLDAPQQLPLDEVLAAI 411

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNL 123
             +LVD+  +KI    +FD  V+     + ++ + F T + S +        +H +    
Sbjct: 412 KPILVDKNIQKIGQNLKFDYGVMANY-DIELKNMAFDTMLESYVLNSVAGLGRHDMDSLA 470

Query: 124 KELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRS 177
           +  L       ++ +    + L+  Q+       YAA D      L      +L+   + 
Sbjct: 471 QRHLNHKTITFEEIAGKGKNQLTFNQIPLEQASTYAAEDADVTLLLHQTLWPQLESEPKL 530

Query: 178 D--LATSCCNFLMDRAELDLLG 197
                      +   A ++ +G
Sbjct: 531 KGIFQQIEMPLVPVLARMERVG 552


>gi|242075030|ref|XP_002447451.1| hypothetical protein SORBIDRAFT_06g001220 [Sorghum bicolor]
 gi|241938634|gb|EES11779.1| hypothetical protein SORBIDRAFT_06g001220 [Sorghum bicolor]
          Length = 311

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 9/154 (5%)

Query: 22  AIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           ++  D E     PRR     ++ ++QL        ++ IA      P L  +L D    K
Sbjct: 141 SLGFDLE-WRPFPRRGEPPCKVAVMQLCMEKTLCYVLHIAHSGV-PPILKTLLEDSSSIK 198

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ- 135
           +      D   +   + V V+P+   + +A+    T   +  L    + +    + K   
Sbjct: 199 VGICIDNDARKMLNDYDVCVQPLMDLSTLANVKLATPPKRWSLASLTEMITCKELPKPSN 258

Query: 136 -QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            +  +W  D L+ +QLQYAA+D      L     
Sbjct: 259 IRMGNWEVDVLTKQQLQYAATDAYISWYLYEALQ 292


>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
 gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
          Length = 928

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 18/189 (9%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI   +         +  D  A DTET  L   +  L  +  S  +G    + +A    +
Sbjct: 331 TILTQDALEKWFAKLQQADLFAFDTETTSLNYMQAELVGMSFSIEEGDAAYLPLAHDYVD 390

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           AP              +L D+ + K+  + ++D  VL     + ++ + + T + S +  
Sbjct: 391 APQQLDRSAVLALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAYDTMLESYVLN 449

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H +    +  LG++    +  +   A  L+  Q+      QYAA D      L  
Sbjct: 450 SVATRHDMDSLAQYYLGLSTVHFEDIAGKGAKQLTFNQIPLDQAAQYAAEDADITLRLHN 509

Query: 166 QFTEKLQRL 174
              +KL + 
Sbjct: 510 HIWQKLHQT 518


>gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96]
 gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96]
          Length = 930

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 24/186 (12%)

Query: 13  AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65
            +  AR   A   A DTET  L   + ++  V  +   G    + +A      P+     
Sbjct: 342 DDWLARLEKAELFAFDTETTSLDYSKAQIVGVSFAVTPGKAAYVPLAHDYPGVPDQLDRS 401

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119
                L  +L + ++ K+    ++D  VL    G+ +R +   T + S +  +   +H +
Sbjct: 402 EILEKLRPLLENPRKAKLGQNLKYDTHVLANH-GIALRGIAHDTMLESYVLNSTATKHNM 460

Query: 120 KDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKL 171
            D  KE LG+          K  +       ++S +Q   YAA D      L      KL
Sbjct: 461 DDLAKEYLGVETIHYEDVAGKGAKQI--GFQEVSIDQAAPYAAEDADITLQLHQVLNAKL 518

Query: 172 QRLGRS 177
            +  R 
Sbjct: 519 AQHPRL 524


>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
 gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
          Length = 919

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVG 68
             + +A DTET  L   +  L  V ++   G    I +A   ++AP           L  
Sbjct: 340 QAELVAFDTETTSLNYMQAELVGVSVAIEAGKAAYIPVAHDYEDAPEQLDRDWVLEQLKP 399

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
            L DE + K+  + ++D  VL   + + +R + F T + S +  +   +H +     + L
Sbjct: 400 WLEDEGKAKVGQHLKYDANVL-NNYDITLRGIKFDTMLESYVFNSTGTRHDMDSLSSKFL 458

Query: 128 GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
           G +  K +  +   A   +  Q+       YAA D      L      KL++ 
Sbjct: 459 GHSTVKFEDIAGKGAKQKTFNQIDLEQAAFYAAEDADITLRLHQAILPKLEKT 511


>gi|156391169|ref|XP_001635641.1| predicted protein [Nematostella vectensis]
 gi|156222737|gb|EDO43578.1| predicted protein [Nematostella vectensis]
          Length = 204

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM----LVDEKREKIFHYGRFDIAVLFYTF 93
           +  ++QL   + T  + ++++          +    L DE   K+      D+  +   +
Sbjct: 64  KTSLIQLCSSESTCYLFQLSSMALLLKKPSQLNYTILEDETIVKVGVGINSDVDKISREY 123

Query: 94  GVRVRPVFCTKIASRLTRTYTNQH---GLKDNLKELLGINISKAQ--QSSDWSADDLSDE 148
            V  R +      S L  T    H    L      L    ++K    + S+  A  L+ E
Sbjct: 124 DVYPRGIVD---LSALANTKLKSHENWSLSGLTMHLFKQQLNKDPAIRCSNCEAIPLTRE 180

Query: 149 QLQYAASD 156
           Q  YAA D
Sbjct: 181 QQLYAAMD 188


>gi|74000167|ref|XP_535437.2| PREDICTED: similar to CG4051-PA [Canis familiaris]
          Length = 569

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 25/144 (17%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 171 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILKVIHDCRWLSD--CLSHQYG 228

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGINISKAQQS---------- 137
           + +  VF T++A     S  T  +       LK++L   L +   K              
Sbjct: 229 ILLNNVFDTQVADVLQFSMETGGFLPNCISSLKESLIRHLKMA-PKYLSFLEERQKLIQE 287

Query: 138 --SDWSADDLSDEQLQYAASDVVH 159
               W    LS   L+  A +  +
Sbjct: 288 NPEVWFTRPLSPSLLKILALEATY 311


>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
 gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
          Length = 940

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 28/203 (13%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +     A DTET  L P    L  V  S  +     + +A     AP           L 
Sbjct: 353 KNKGLFAFDTETTSLHPEDCTLVGVSFSVEEKEAFYLPLAHAYLGAPVQLAKDDVFAKLA 412

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKEL 126
            +  D K +KI H  +FD+ VL++     V+ V+  T + + L  +      L +  ++ 
Sbjct: 413 PVFADPKIKKIGHNVKFDLLVLYFAGLSAVKGVYADTMLMAHLLDS-VQSCALDNLAEKY 471

Query: 127 LGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           L     K  + SD          +    +      Y+  D      L      K++  G+
Sbjct: 472 LSY---KTIKYSDVAGSGSKSVTFDNVPVDIA-CAYSGEDSEVALRLFNVLLPKIKDEGK 527

Query: 177 SD--LATSCCNFLMDRAELDLLG 197
           ++  L       L    +++ +G
Sbjct: 528 ANDILFNLEMPCLSVLFDMERVG 550


>gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 645

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 40/187 (21%)

Query: 17  ARYVDAIAVDTETL-GLMPRRD-RLCI---------VQLSPGDGTVDIIRIAA------- 58
                 IA D ET      RRD +  +         V  S  +GT   + +         
Sbjct: 16  LDKAGLIAFDFETAPREKYRRDEKAALDAHKADIAGVSFSVSEGTAVYVPLKHKTGKNAG 75

Query: 59  -GQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLT----- 110
              K    L   +  + K  KI H   F+ A+  Y  GV ++ P + T IA+ L      
Sbjct: 76  SPDKIMQWLSENVFANRKVVKIAHNLSFE-AMFLYALGVVLQPPCYDT-IAAALMTLKSN 133

Query: 111 ---RTYTNQHGLKDNLKELLGINISKAQQSSDWSAD------DLSDEQLQYAASDVVHLH 161
              RT  +  GLK   +EL G+++   +  +  +           +E ++YA +D  +  
Sbjct: 134 TAFRTLADS-GLKTLTQELFGVDLPSFETVT--AGRYFDELDPQDEETVRYACADSDYTL 190

Query: 162 ALRLQFT 168
            L   F 
Sbjct: 191 RLYHLFN 197


>gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
 gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
          Length = 883

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 13/168 (7%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAGQKNAPNLVGMLVDE 73
            +    I  DTET    P +  L  +      G    I +      +K    L  +  + 
Sbjct: 310 LQKEKEICFDTETTHWHPLKAELVGIGFCIKQGAAWYIPMNGKLGLEKALKKLAPLFENS 369

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
           +     H+ ++D+ +L    G+ +  + F T +AS +   +  QH L     E  G    
Sbjct: 370 RIGFYAHHLKYDLHILKNY-GISLANISFDTILASYILTPHLRQHSLDALTLEHFGKTKI 428

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
                I K +         + ++   Y   DV + + L+  F  +L++
Sbjct: 429 PTSDLIGKGKNQITMLEVPI-EKVCAYCCEDVDYTYRLKQIFASELKK 475


>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
 gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
          Length = 940

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 33/182 (18%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------- 65
           A     IA+DTET  L   +  LC +  S   G    + +  GQ +              
Sbjct: 347 AEEHGIIAIDTETDNLEGMKANLCGISFSIVPGKAYYVPVGHGQTDLSLDDPEHSQQMSE 406

Query: 66  ------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTNQHG 118
                 L  +L+D    K+    ++D+ +L     + V     T + S      + + HG
Sbjct: 407 ATALDILKPVLLDPSILKVGQNLKYDLLIL-RERDIDVVGYDDTMLLSYAADCGFASLHG 465

Query: 119 LKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           + +  K  LG              K +   D     + D  + YAA D      L     
Sbjct: 466 MDELSKRHLGHEPIPYKEIVGTGKKQKTFGD---VPIKDAYI-YAAEDADVTLRLHTILK 521

Query: 169 EK 170
            +
Sbjct: 522 SR 523


>gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
 gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
          Length = 936

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 12/114 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVGM 69
            R     A DTE   L      L  + L+        + +                L  +
Sbjct: 353 LRAAPGFAFDTECTSLQAVGSHLVGIALAIAPNDAYYVPVGHEEGEQLPLADVVAALGPL 412

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122
             D    K  H  +FD  VL    G++V  + F T IA+ +      + GLKD 
Sbjct: 413 FADPNIPKFAHNAKFDAEVL-AGVGIQVAGLAFDTMIAAAML---GKRQGLKDL 462


>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
 gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
          Length = 923

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 26/203 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +A A DTET GL      +  V  +  +G    + +A    +AP           L
Sbjct: 340 LKAAEAFAFDTETDGLDYMTANVVGVSFAIEEGKAAYVPLAHDYLDAPAQLDRDWVLEQL 399

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D K+ KI    +FD A +   +G+ ++ + F T + S +  +   +H +      
Sbjct: 400 KPLLEDPKQAKIGQNLKFD-ASIVARYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALR 458

Query: 126 LL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGR 176
            L    I+  +           L+  Q+       YAA D      L      K++   +
Sbjct: 459 YLEHKNISFEEVAGK---GKKQLTFNQIDLEQAGPYAAEDADITLRLHNTLYPKVEADDK 515

Query: 177 SDLATS--CCNFLMDRAELDLLG 197
                       +   + ++  G
Sbjct: 516 LKHVFENIEMPLVPVLSRMERTG 538


>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 933

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 18/177 (10%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------- 65
            + +     A DTET  L      L  +  +        I +     +AP+         
Sbjct: 347 ASLKAAKIFAFDTETDSLDVLTTNLVGLSFATAPSVAAYIPVGHDYLDAPDQLDRDDVLA 406

Query: 66  -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123
            L  +L D    K+    ++D  V+    G+ ++ + F T + S    +   +H +    
Sbjct: 407 KLKPVLEDANLLKVGQNLKYDQGVMARY-GIELQGIAFDTMLESYDLDSVAGRHDMDSLA 465

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
           +  L       ++ +      L+  Q+       YAA D      L L+   +L++ 
Sbjct: 466 ERHLNHKTITFEEIAGKGKSQLTFNQIALEQATPYAAEDADVTLQLHLKLWPQLEKE 522


>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
 gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
          Length = 938

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  V  +  +G    I +A    +AP           L
Sbjct: 355 LQQAELFAFDTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDREWVITQL 414

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 415 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 473

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  + +  +++  + + 
Sbjct: 474 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQ 533

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 534 VYREIEMPLVPVLSRIERTG 553


>gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135]
 gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135]
          Length = 919

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 21/196 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------PNLVGM 69
            +  + +A+DTET  L     ++  + +S  +     I I   +K               
Sbjct: 347 LKQANYVAIDTETTSLNVHEAQIIGISVSFKEFESYYIPIETKEKKTIEKAYIIQKFNEF 406

Query: 70  LVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
              + +  I    +FD  +L  + F V   P F T IA+ +    T +  L    ++ L 
Sbjct: 407 FKAQPKL-IGQNYKFDYKILKKHEFNVIP-PYFDTMIAAYVIDPNT-KVSLDFLAEKYL- 462

Query: 129 INISKAQQ-----SSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             + K  +     + + +  D+  E +  YAA D      L   FT+KL+     +L T 
Sbjct: 463 --MHKNIRYEEIVAQNGTLKDIPLEMVSNYAAEDADITFRLFKIFTKKLKEDNLENLMTD 520

Query: 183 -CCNFLMDRAELDLLG 197
               F     E++  G
Sbjct: 521 IEMPFSNVITEMEENG 536


>gi|39968737|ref|XP_365759.1| hypothetical protein MGG_02461 [Magnaporthe oryzae 70-15]
 gi|145013929|gb|EDJ98570.1| hypothetical protein MGG_02461 [Magnaporthe oryzae 70-15]
          Length = 430

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 15/150 (10%)

Query: 39  LCIVQLSPGDGTVD---IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95
           +C+VQL+           +        AP+L  +L +    K+    + D   L    G+
Sbjct: 78  VCLVQLASPSRIALFHLALYPKDDSLVAPSLKLLLENSDISKVGVNIKADCTRLRTWLGI 137

Query: 96  RVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKAQ--QSSDWSADD 144
             + VF      +L +   +            L + ++ + G+++ K Q  +SSDWS   
Sbjct: 138 DSKGVFELSHLYKLVKYSASGETHLINRRAVALAEQVEAVFGLSMFKGQDVRSSDWSK-P 196

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           L  EQ+ Y++SD      +     ++ + L
Sbjct: 197 LKMEQIIYSSSDAYAGPQIYNVLEQQREAL 226


>gi|156363455|ref|XP_001626059.1| predicted protein [Nematostella vectensis]
 gi|156212921|gb|EDO33959.1| predicted protein [Nematostella vectensis]
          Length = 179

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 114 TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           T+  GLK   K +LGI + K +    S+W    L+ +Q+ YAA D      L ++  ++L
Sbjct: 2   TDGTGLKKLAKTILGIELDKPKNISLSNWELFPLTYKQVSYAALDAWVSFKLFVELKQRL 61

Query: 172 QRLG 175
            + G
Sbjct: 62  HKSG 65


>gi|322797653|gb|EFZ19662.1| hypothetical protein SINV_03012 [Solenopsis invicta]
          Length = 255

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 14/170 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            I  D E          DR  +VQ+   D    ++ + + +K     V +L   K + + 
Sbjct: 80  PIGFDLEWPF-SFQTGSDRTALVQICLEDSVCYLLYVYSLRKLPAAFVELLCHPKVKLVG 138

Query: 80  HYGRFDIAVLFYTFGVRVR------PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              + D+  L   F                   +      + +  L+     L+ +   K
Sbjct: 139 VNIKNDVWKLGRDFKEFPAQKVVENNCLDCGTYANRVLKRSCRWSLEKLTAYLVYLYFIK 198

Query: 134 --AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK---LQRLGRSD 178
             + + S W    LSD Q  YAA+D      L      K   +++  ++D
Sbjct: 199 DPSVRMSKWHIQPLSDAQKSYAATDAYVSLLLYTTLEAKAIAIEKENQND 248


>gi|302784546|ref|XP_002974045.1| hypothetical protein SELMODRAFT_100501 [Selaginella moellendorffii]
 gi|300158377|gb|EFJ25000.1| hypothetical protein SELMODRAFT_100501 [Selaginella moellendorffii]
          Length = 200

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 51/151 (33%), Gaps = 11/151 (7%)

Query: 22  AIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            +  DTE             R  ++QL        +  I       P L  +L +E   K
Sbjct: 42  VLGFDTEWKPSFERGAVP-GRTAVLQLCLDSSRCYVFHIFHSGI-PPQLQKLLEEETISK 99

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK--AQ 135
                  D++ L   +GV V         +      +    L    +EL    I K    
Sbjct: 100 AGIGISGDVSKLKLDYGVTVTGSVDLSAMANQKLKRSQSWSLSSLAEELTCKVIDKPTDI 159

Query: 136 QSSDWSADDLSDEQLQYAASDV---VHLHAL 163
           +  DW    LS  QL YAA+D    +HL+ +
Sbjct: 160 RCGDWELQPLSPAQLSYAATDAFASLHLYQV 190


>gi|294942282|ref|XP_002783467.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983]
 gi|239895922|gb|EER15263.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983]
          Length = 500

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 11/162 (6%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI---AVLFYTFGV 95
           + +VQL+  D    +IR          +  +L D K+ K+     FD+   A L +TF +
Sbjct: 79  ISLVQLATED-LALLIRTNTHHVLPQWVRDLLNDPKKAKV--TIGFDVSDHAKLQFTFDL 135

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSA-DDLSDEQLQY 152
               V      S+  R+   + GLK  +    G  +   K    SDWSA + LSD Q+ Y
Sbjct: 136 ECNNVIDLYEISKKNRS-VPRGGLKR-IAHHFGYFLRKDKKISMSDWSATEPLSDIQIHY 193

Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
           AA D      L  +    L    R +        + ++ + D
Sbjct: 194 AADDAFFPLLLVAELGGLLNSGVRMESLKENVKVVDNKDKYD 235


>gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001]
 gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001]
          Length = 1047

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 64/219 (29%), Gaps = 47/219 (21%)

Query: 20  VDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA-------------------- 57
              IAVDTET  L     +  +  V L+   G    I +A                    
Sbjct: 446 AGVIAVDTETDALDA--AKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGDGGAGAD 503

Query: 58  ---------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
                            L  +L D    K+    ++D +VL    G+ V P   T + S 
Sbjct: 504 ESDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDFSVLHRY-GIDVAPFDDTMLISY 562

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DDLSDEQLQYAASDVVH 159
           +       HG+ +  +  LG         +D +              D+   YAA D   
Sbjct: 563 VLDAGKGGHGMDELARRHLGHQP---ITFADVAGTGRNKVTFDRVAIDKATAYAAEDADV 619

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              L      +L    R  +  +     +   A ++  G
Sbjct: 620 TLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAG 658


>gi|170040469|ref|XP_001848020.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167864104|gb|EDS27487.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 302

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 19/173 (10%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            IA D E           R+ ++QL        + +++  +K    L+ +L   +     
Sbjct: 127 PIAFDLEWPF-SFQTGPGRVALMQLCAETDVCYLFQVSCLKKLPAALLQLLNHPRVC--L 183

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF--CTKIASRLTRTYTNQ--HGLKDNLKELLGINIS 132
           H    + D   L   F       +   C  +     R +       ++  + ++  + IS
Sbjct: 184 HGVNVKNDFRKLARDFPEANAERMIEQCVDLGQWYNRIHGTTGIWSMERLVLQVCQLRIS 243

Query: 133 --KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             K  + S W    LSD+Q  YAA DV     + L+   K        LA   
Sbjct: 244 KNKKVRMSKWHVLPLSDDQKLYAAIDVYIGQEIYLKLQAK-----ELQLAQEE 291


>gi|118089996|ref|XP_001235033.1| PREDICTED: Werner syndrome [Gallus gallus]
          Length = 1466

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 24/147 (16%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF------H---YGRFD-- 85
            ++ ++QL   +    +  I++       L  +L DE  +K+       H    G F+  
Sbjct: 71  AKIALIQLCVTEEKCYLFHISSMSGFPKGLKRLLEDETIKKVGVGIEGDHWKLMGDFEVK 130

Query: 86  IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSAD 143
           +        V    + C ++             L   +K L G  +   K+ +  +W   
Sbjct: 131 LKSFVELADVANEKLKCKEV-----------WSLNGLVKHLFGKQLLKDKSIRCGNWEKF 179

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEK 170
            L +EQ  YAA+D      +  +    
Sbjct: 180 PLDEEQKLYAATDAYAGFIIYQKLKTM 206


>gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH]
 gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH]
          Length = 872

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 63/201 (31%), Gaps = 30/201 (14%)

Query: 21  DAIAVDTETLGL-------MPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNL 66
             +A DTET  L                   +        + I                L
Sbjct: 320 KIVAFDTETDSLENPNIVGFSF---------AYEKNKAYYVPINHFYLGVTDQIPEKTAL 370

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +     ++ I H  +FD  +L         P   T I + +    +   GL    K  
Sbjct: 371 KAIQKILDKKVIGHNLKFDFKMLKKYGLEIPTPHADTMILAWILDPDSP-VGLDSVAKRY 429

Query: 127 LGINISKAQ----QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L     K +    +  ++S  D+ +   +YAA D +    L     EKL    + D+   
Sbjct: 430 LDHQNIKFKEVIGKRKNFSEVDIQEA-AKYAAEDALISLKLYEILKEKLWEEVKWDIENI 488

Query: 183 CCNFLMDRAELDLLGWENVDI 203
              F+    +++  G + +DI
Sbjct: 489 EMPFINLLIDIESQGIK-LDI 508


>gi|294911999|ref|XP_002778118.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983]
 gi|239886239|gb|EER09913.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983]
          Length = 500

 Score = 60.0 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 11/162 (6%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI---AVLFYTFGV 95
           + +VQL+  D    +IR          +  +L D K+ K+     FD+   A L +TF +
Sbjct: 79  ISLVQLATED-LALLIRTNTHHVLPQWVRDLLNDPKKAKV--TIGFDVSDHAKLQFTFDL 135

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSA-DDLSDEQLQY 152
               V      S+  R+   + GLK  +    G  +   K    SDWSA + LSD Q+ Y
Sbjct: 136 ECNNVIDLYEISKKNRS-VPRGGLKR-IAHHFGYFLRKDKKISMSDWSATEPLSDIQIHY 193

Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
           AA D      L  +    L    R +        + ++ + D
Sbjct: 194 AADDAFFPLLLVAELGGLLNSGVRMESLKENVKVVDNKDKYD 235


>gi|332235202|ref|XP_003266794.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Nomascus
           leucogenys]
          Length = 514

 Score = 59.6 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 25/144 (17%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGR--FDIAVLFYTF 93
           +LC +Q++  +  V +  I      A N  L  +L D+K  K+ H  R   D   L + +
Sbjct: 115 KLCWLQVAT-NCRVYLFDIFLLGSGAFNNGLQMILEDKKILKVIHDCRWLSD--CLSHQY 171

Query: 94  GVRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS--- 137
           G+ +  VF T++A     S  T  Y       L+++L + L +       + K Q+    
Sbjct: 172 GILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVAPKYLSFLEKRQKLIQE 231

Query: 138 --SDWSADDLSDEQLQYAASDVVH 159
               W    +S   L+  A +  +
Sbjct: 232 NPEVWFIRPVSPSLLKILALEATY 255


>gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12]
 gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12]
          Length = 859

 Score = 59.6 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 23/211 (10%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             +  +              +DTET  L      +  + L+  +     I       +  
Sbjct: 268 TTQAQLDDWLQQLENCQVFCLDTETTSLDIMAAEIVGISLAIEEKKAAYIPFIHTDGSVQ 327

Query: 65  NL--------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTN 115
            L          +L +   +KI    ++D +VL    G+ ++ + + T + S +  +   
Sbjct: 328 LLRDEVFAAIKPILENPAIKKIGQNIKYDYSVLKNH-GIHLQGLAYDTMLESYILNSNAG 386

Query: 116 QHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQ 166
           +H +     + LG    K     D     A  L  +Q+       YAA D      L  +
Sbjct: 387 RHDMDTLSLKYLGH---KTITFEDIAGKGAKQLRFDQIPVDKASVYAAEDADITLQLHHK 443

Query: 167 FTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
               +     S         +   AE++L G
Sbjct: 444 LYPMMAESLHSVFNDIEMPLIPVLAEMELRG 474


>gi|300727989|ref|ZP_07061367.1| 3- 5 exonuclease domain protein [Prevotella bryantii B14]
 gi|299774831|gb|EFI71445.1| 3- 5 exonuclease domain protein [Prevotella bryantii B14]
          Length = 229

 Score = 59.6 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 14/156 (8%)

Query: 20  VDAIAVDTETLGLMPR--RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            D +  DTET  +  R  ++++ ++Q+   +    + R+       P ++ +L D +  K
Sbjct: 45  SDILGFDTETRPVFRRGKQNKVSLLQVCNRE-ICFLFRLNRTG-LTPAIIRLLEDTRVTK 102

Query: 78  I---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISK 133
           I   +H    D+  L              + +A ++         L+     L    ISK
Sbjct: 103 IGLSWHD---DLLGLHKLGDFEAGSFVELQNLAPKI---GIEDKSLQKIYANLFHQKISK 156

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           +Q+ ++W AD L D Q  YAA+D      +  +   
Sbjct: 157 SQRLTNWEADVLKDSQKLYAATDAWTCIQIYDELQR 192


>gi|157875674|ref|XP_001686219.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68129293|emb|CAJ07833.1| hypothetical protein LMJF_34_1240 [Leishmania major strain
           Friedlin]
          Length = 538

 Score = 59.6 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 10/149 (6%)

Query: 30  LGLMPRRDR---LCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85
           +G+     R   L +VQ +       + I    G+     +   L D    K       D
Sbjct: 15  MGMDSEWCRNLPLAVVQFATSSHCFVLHISFFDGRTLPAAVKEALCDPSIIKCGVGVSGD 74

Query: 86  IAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSA 142
           ++ L     + ++ V    + ++        Q  LK   K +  ++I   K    S+W  
Sbjct: 75  VSRLQKEQNITIQSVLDVAQYSALFGLHQGAQSNLKVLAKSVANLSIEKDKMITRSNWEL 134

Query: 143 DDLSDEQLQYAASDVV--HLHALRLQFTE 169
             LSD ++ YAA D +  +L    +    
Sbjct: 135 -PLSDSRVNYAAEDALASYLVGRAVMLKA 162


>gi|125527138|gb|EAY75252.1| hypothetical protein OsI_03140 [Oryza sativa Indica Group]
          Length = 357

 Score = 59.6 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 12/155 (7%)

Query: 23  IAVDTETLGLMPRRD-----RLCIVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKRE 76
           + +DTE        D     ++ ++QL  G     + +I       P  L   L D    
Sbjct: 194 VGIDTE-WRTDHLPDGKTCYKVAVLQLCVG-RRCLVFQIYQAGNMVPHELAEFLADPSVR 251

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKA 134
            +      D+  L     +RV      + A+          + GLK     ++G ++ K 
Sbjct: 252 FVGVAVNNDMQRLANDCNLRVACAVDLRYAAAAVLGQPELARAGLKRLALTVMGAHMEKE 311

Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           +    S W    L+ EQ+ YA  D    + +  + 
Sbjct: 312 KNITKSRWGEPTLTWEQVNYACIDAYVSYEIGRRL 346


>gi|260556877|ref|ZP_05829094.1| 3'-5' exonuclease [Acinetobacter baumannii ATCC 19606]
 gi|260409483|gb|EEX02784.1| 3'-5' exonuclease [Acinetobacter baumannii ATCC 19606]
          Length = 213

 Score = 59.6 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 56/146 (38%), Gaps = 22/146 (15%)

Query: 17  ARYVDAIAVDTET--------LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
            R    +  D+E+        +   P      ++QL+                    L  
Sbjct: 43  LRAATFLGFDSESKPTFQVGEVSTGPH-----LIQLATEHKAYL---FHVNSSTLKFLQP 94

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR-TYTNQHGLKDNLKELL 127
           +L + K+ K+    + D   +F+  G+ +       +A   +   +  Q GL+  +  LL
Sbjct: 95  ILSNPKQIKVGFGLKND-KHIFHKKGIELESCVD--LAKGFSHFGFKQQMGLQKAVALLL 151

Query: 128 GINISKAQ--QSSDWSADDLSDEQLQ 151
           G  ++K++   +S+W+   L+ +Q+ 
Sbjct: 152 GQYLAKSKKVGTSNWARKPLTSQQIS 177


>gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 930

 Score = 59.6 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      +  +  +   G    + +A    +AP+          L
Sbjct: 348 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLALL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L     + +R + F T + S +  +   +H +      
Sbjct: 408 KPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+      +YAA D      L L+   KLQ+  G  +
Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 526

Query: 179 LATS-CCNFLMDRAELDLLGWE 199
           +        +   + ++  G +
Sbjct: 527 IFQHIEMPLVPVLSRVERNGVK 548


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score = 59.6 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  L P +  L    +  L+PG      ++  +G  +           
Sbjct: 383 AVETGVLAFDTETTSLDPMQAELVGFSL-ALAPGRAAYIPLQHKSGAGDLLGGGMVEGQI 441

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  V+    G+       T + S +    T  H
Sbjct: 442 PLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRH-GINTVSFDDTMLISYVLDAGTGSH 500

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      +S + +       YAA D      L      
Sbjct: 501 GMDPLSERWLGHTPIPYKDVAGS--GKSAVSFDMVDLDRATAYAAEDADVTLRLWQVLKP 558

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 559 RLAAEGLMSVYE 570


>gi|294900785|ref|XP_002777114.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239884571|gb|EER08930.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 201

 Score = 59.6 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 20/149 (13%)

Query: 21  DAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           + + +D E       ++  + ++Q++     V + R   G+   P L   L      K+ 
Sbjct: 30  EPLGLDFEWNREFKGQNNPIALIQVATPTNGVLLFRCRPGEDLHPILRDALTCPNTVKVV 89

Query: 80  HYGRFDIA---VLFYTFGVR--VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK- 133
               FD      L  +FG+    R +      ++  R   ++ GLK   ++ L  NI K 
Sbjct: 90  --CGFDSRDKKKLMESFGIEIPPRSLVDVSKEAQ--RQGMHKTGLKAICRD-LQFNIFKP 144

Query: 134 ----AQQSSDWSADDLSDEQLQYAASDVV 158
                 Q   WS   L   Q++YAA+D  
Sbjct: 145 TYPNFHQ---WSGR-LRKSQIRYAAADAW 169


>gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
 gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
          Length = 904

 Score = 59.6 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 18/171 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------APNLVG 68
           +     ++DTET  L   +  L  + L    G    I +     +           +L  
Sbjct: 324 KEEKFFSIDTETNSLNTMKAELVGISLCINPGRACYIPLCHKNSSVDQLSLAAVLEDLKP 383

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELL 127
           +L D   +K+    ++D  +     G+ +  +   T + S +  +  N HG+     + L
Sbjct: 384 ILEDSSIKKLGQNLKYDAHIFLNY-GIEINGISDDTMLMSYVIESNQN-HGMDKLSAKYL 441

Query: 128 GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           G N    +       + L+ +Q+       YAA D      L L   E L 
Sbjct: 442 GHNCKSYESLVGKGVNQLTFDQVSVEDAVPYAAEDADVTLQLYLAMKETLD 492


>gi|134080969|emb|CAK41483.1| unnamed protein product [Aspergillus niger]
          Length = 428

 Score = 59.6 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 26/177 (14%)

Query: 36  RDRLCIVQLSPGDGTVD----IIRIAAGQKNA--PNLVGMLVDEKREKIFHYGRFDIAVL 89
           +D + ++Q++  +        + R      +   P+L  ++      K+    + D   L
Sbjct: 239 QDNVSLIQIANRERIALFHVALFRPGRKISDLVPPSLKQIIESPDITKLGVSIKADCTRL 298

Query: 90  FYTFGVRVRPVFCTKIASRLTRT--------YTNQHGLKDNLKELLGINISKAQ--QSSD 139
                V    +F      +L +               L + ++E LG+ + KA+  + SD
Sbjct: 299 RKYLKVDAHGIFELSHLHKLVKYCQTNPKLINKRPVNLSEQVEEHLGLPLEKAEDVRCSD 358

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFLMDRAELDL 195
           W+   LS  Q+QYAASD      L      K + L  R          L   A+LDL
Sbjct: 359 WTV-SLSYRQVQYAASDSYACICLFDTMDAKRKALDPRPP--------LPAHADLDL 406


>gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 927

 Score = 59.6 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      +  +  +   G    + +A    +AP+          L
Sbjct: 345 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLALL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L     + +R + F T + S +  +   +H +      
Sbjct: 405 KPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 463

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+      +YAA D      L L+   KLQ+  G  +
Sbjct: 464 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 523

Query: 179 LATS-CCNFLMDRAELDLLGWE 199
           +        +   + ++  G +
Sbjct: 524 IFQHIEMPLVPVLSRVERNGVK 545


>gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
 gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
          Length = 946

 Score = 59.6 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 39/204 (19%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML----VDEKRE 76
           ++   DTET  L      L  + +S        I   + Q     ++ +L          
Sbjct: 374 ESFCFDTETTSLNALEAELVGLAISFRAKEAYYIPFTSDQIQTQRILDLLQPAFEKSSIT 433

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           K+    ++D+ VL         P+F T +A  L      +HG+    +  L         
Sbjct: 434 KVGQNLKYDLLVLKKYNFAIAGPLFDTMLAHYLLEPEM-RHGMDTLAEVYLNYT------ 486

Query: 137 SSDWSADDLSDEQL--------------------QYAASDVVHLHALRLQFTEKLQRLGR 176
                   +S EQL                    +YAA D      L   F+  ++    
Sbjct: 487 -------PVSIEQLIGKKGAKQGTMRDVEIEAIKEYAAEDADITFQLYKFFSPLVKDQNL 539

Query: 177 SDLATS-CCNFLMDRAELDLLGWE 199
           + L            A+++L G +
Sbjct: 540 NPLFNEVEMPLSEVLADMELEGVK 563


>gi|325856853|ref|ZP_08172351.1| 3'-5' exonuclease [Prevotella denticola CRIS 18C-A]
 gi|325483226|gb|EGC86203.1| 3'-5' exonuclease [Prevotella denticola CRIS 18C-A]
          Length = 224

 Score = 59.6 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 19/168 (11%)

Query: 21  DAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           D I +DTET      R         ++ ++Q    +          G  +   +   L D
Sbjct: 46  DIIGIDTET------RPVFRKGQHHKVALLQACDREVCFLFRLNIIGIPDC--VKRFLED 97

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+      D+ +L      +       +    +         L+     +    I+
Sbjct: 98  TTVPKVGLSLGDDMLMLHQRSAFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFHERIT 155

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           K +Q S+W    L+D+Q  YA++D      L  +  E L+  G  +L 
Sbjct: 156 KREQLSNWENQILNDKQKLYASTDAWTCINLYERLHE-LKHTGDYELV 202


>gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044]
 gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 930

 Score = 59.6 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      +  +  +   G    + +A    +AP+          L
Sbjct: 348 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLTLL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L     + +R + F T + S +  +   +H +      
Sbjct: 408 KPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+      +YAA D      L L+   KLQ+  G  +
Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 526

Query: 179 LATS-CCNFLMDRAELDLLGWE 199
           +        +   + ++  G +
Sbjct: 527 IFQHIEMPLVPVLSRVERNGVK 548


>gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316]
          Length = 930

 Score = 59.6 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 20/202 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      +  +  +   G    + +A    +AP+          +
Sbjct: 348 LKKAPVFAFDTETDSLDNISANMVGLSFATAPGVAAYVPVAHDYLDAPDQIPRDRVLELM 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+K  K+    +FD  +L    G+ +R + F T + S +  +   +H +      
Sbjct: 408 KPVLEDDKALKVGQNLKFDRGILQNY-GIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+      +YAA D      L L+   KLQ+  G  +
Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQKHEGPLN 526

Query: 179 LATS-CCNFLMDRAELDLLGWE 199
           +        +   + ++  G +
Sbjct: 527 VFQHIEMPLVPVLSRIERNGVK 548


>gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 896

 Score = 59.6 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               +  A DTET  L     ++  V  +   G    + +A     AP           +
Sbjct: 314 LEAAELFAFDTETTSLNYMEAKVVGVSFAIEAGKAAYVPLAHDYLGAPEQLDRDAVLAQM 373

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  + K+    ++D +VL    G+ ++ + + T + S +  +   +H +     +
Sbjct: 374 KPLLEDPNQAKVGQNLKYDASVLANH-GIALKGIDYDTMLESYVLDSTATRHDMDSLALK 432

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
            LG N    +  +   A  L+  Q++      YAA D      L      KL+ L
Sbjct: 433 YLGQNTIHFEDIAGKGAKQLTFNQVKVEEAGPYAAEDADITLRLHQALWPKLEEL 487


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 20/199 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRR-DRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVG 68
            +   + AVD ET  L P   D +  + +S        I +          ++    L  
Sbjct: 314 LKESPSFAVDLETSSLDPFDCDIVG-ISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKLKE 372

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L D   + +    +FD  VL       V P F T IA+ L      +  L D   + LG
Sbjct: 373 ILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPHFDTMIAAYLIEPNEKKFNLDDLALKFLG 432

Query: 129 INISKAQQSSDWSADDL---------SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             ++  Q+   +S+  L          ++   Y+  D    + L    + KL      ++
Sbjct: 433 YKMTSYQELMSFSS-PLFGFSFADVPVEKAANYSCEDADITYRLYKTLSLKLHEADLENV 491

Query: 180 -ATSCCNFLMDRAELDLLG 197
                   +   A ++L G
Sbjct: 492 FYKIEMPLVNVLARMELNG 510


>gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
 gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
          Length = 930

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      +  +  +   G    + +A    +AP+          L
Sbjct: 348 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLTLL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L     + +R + F T + S +  +   +H +      
Sbjct: 408 KPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+      +YAA D      L L+   KLQ+  G  +
Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 526

Query: 179 LATS-CCNFLMDRAELDLLGWE 199
           +        +   + ++  G +
Sbjct: 527 IFQHIEMPLVPVLSRVERNGVK 548


>gi|294898985|ref|XP_002776447.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239883438|gb|EER08263.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 201

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 20/149 (13%)

Query: 21  DAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           + + +D E       ++  + ++Q++     V + R   G+   P L   L      K+ 
Sbjct: 30  EPLGLDFEWNREFKGQNNPIALIQVATPTNGVLLFRCRPGEDLHPILRDALTCPNTVKVV 89

Query: 80  HYGRFDIA---VLFYTFGVR--VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK- 133
               FD      L  +FG+    R +      ++  R   ++ GLK   ++ L  NI K 
Sbjct: 90  --CGFDSRDKKKLMESFGIEIPPRSLVDVSKEAQ--RQGMHKTGLKAICRD-LQFNIFKP 144

Query: 134 ----AQQSSDWSADDLSDEQLQYAASDVV 158
                 Q   WS   L   Q++YAA+D  
Sbjct: 145 TYPNFHQ---WSGR-LRKSQIRYAAADAW 169


>gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
 gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I
 gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
          Length = 942

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-------LVGM 69
            R   A A DTE   L P    L  + ++    TV  I +    +           L   
Sbjct: 355 LRNAPAFAFDTECTSLQPVASDLVGISIAIAPDTVCYIPVGHQSETQVPCGEVVTALAPF 414

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122
             + ++ K  H  +FD+ VL    G++V  + F T IA+ +      + GLKD 
Sbjct: 415 FANPQQPKFAHNAKFDMEVL-AGAGIKVSGLAFDTMIAAAML---GKRQGLKDL 464


>gi|326920474|ref|XP_003206497.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
           [Meleagris gallopavo]
          Length = 322

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 20/177 (11%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGML 70
           PA    +  D I+V  E + L  R  +L  +Q++             G +   N L  +L
Sbjct: 64  PAVLHLKQQDVISVVGEGVNL-CRNGKLSWLQMATKSHIFLFDIFLLGPQAFRNGLQTVL 122

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA-----SRLTRTYTNQ--HGLKDNL 123
            D+   K+ H  R+    LF+ + V +  VF T++A     S  T  +       L++ L
Sbjct: 123 EDKNILKVMHDCRWISDCLFHQYNVLLDNVFDTQVADVLQFSVATGGFFPHCTCTLQECL 182

Query: 124 KELLGI-----NISKAQQ-----SSD-WSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            + L I      + K +Q     + D W          Q  A   ++L  LR    +
Sbjct: 183 MQHLKIPSKWKTLMKHEQQMALENPDMWFLRPFPASLFQVLALKAMYLLLLRSSLMD 239


>gi|164515888|emb|CAP48106.1| putative integron gene cassette protein [uncultured bacterium]
          Length = 199

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 11/140 (7%)

Query: 36  RDRLC--IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
           + R    ++QLS       + R      +   L  ++  +   K+      D A +    
Sbjct: 65  QPRTGPHVLQLST-QQQAFLFRPGNTICD-EILAEIIQSKTIIKVGFGLSSDRAPIQRKL 122

Query: 94  GVRVRPVFCTKIASRLTR--TYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQ 149
           GV++R        S L     Y  + GL+  +  +L   +  SK    S+W+A  LS  Q
Sbjct: 123 GVKLRSAIE---LSVLVHRLGYRPRVGLQSAVSIVLNQYLQKSKKLTLSNWNAKLLSARQ 179

Query: 150 LQYAASDVVHLHALRLQFTE 169
           + YAA+D      +  + T 
Sbjct: 180 ILYAANDAYASLQVYSKLTR 199


>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 911

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 24/178 (13%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
            +  A DTET  L   + +L  +  +   G    + +A     AP           L  +
Sbjct: 331 AELFAFDTETTSLDYMQAQLVGMSFAVKAGEAAYLPVAHDYPGAPEQLSLEFVMQKLGPI 390

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D K+ K+    ++D +VL    G ++  + F T + S +  +   +H +     + LG
Sbjct: 391 LADAKKAKVGQNLKYDKSVLANA-GYQLNGIKFDTMLESYVLNSVGTRHDMDSLALKFLG 449

Query: 129 INISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177
               K     D        L+  Q++      YAA D      L      KL    + 
Sbjct: 450 H---KNISFEDIAGKGKKQLTFNQVELDKAGPYAAEDADITLRLHQVLWPKLAADEKL 504


>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
 gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
          Length = 929

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 20/176 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRD-RLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65
            +  +  A D ET  L       + +   +   G    + +A    +AP           
Sbjct: 346 LQNSELFAFDLETDSLDTLSANIIGL-SFATAPGVAAYLPVAHDYLDAPAQLDRNDVLAR 404

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           L  +L + +  K+    +FD  VL  ++ + ++ + F T + S    +   +H +     
Sbjct: 405 LKPLLENPQALKVGQNLKFDRGVL-KSYDIELQGIRFDTMLESYALNSVIGRHDMDTLAL 463

Query: 125 ELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
             L       ++ +      L+  Q+       YAA D      L L+    L++ 
Sbjct: 464 RWLNHKTVTFEEIAGKGKKQLTFNQIALEQAGHYAAEDADVTLQLHLKMWPALEKE 519


>gi|327314590|ref|YP_004330027.1| 3'-5' exonuclease [Prevotella denticola F0289]
 gi|326944244|gb|AEA20129.1| 3'-5' exonuclease [Prevotella denticola F0289]
          Length = 224

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 19/168 (11%)

Query: 21  DAIAVDTETLGLMPRRD--------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72
           D I +DTET      R         ++ ++Q    +          G  +   +   L D
Sbjct: 46  DIIGIDTET------RPVFRKGQHHKVALLQACDREVCFLFRLNIIGIPDC--VKRFLED 97

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               K+      D+ +L      +       +    +         L+     +    I+
Sbjct: 98  TTVPKVGLSLGDDMLMLHQRSAFKPGYFIDLQ--DYVKSLGIEDMSLQKLYANVFHERIT 155

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           K +Q S+W    L+D+Q  YA++D      L  +  E L+  G  +L 
Sbjct: 156 KREQLSNWENQILNDKQKLYASTDAWTCINLYERLHE-LKHTGDYELV 202


>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
 gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
          Length = 905

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 30/206 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAP---------NL 66
            +    +AVDTET  L   + R+  + L+   G    I +A  G  NAP          L
Sbjct: 326 LKDAPLVAVDTETTSLDEMQARMVGMSLAVSPGVACYIPVAHRGPDNAPQLPKAEVLARL 385

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
              L D  R K+ H+ ++D  V     G+++  +   T + + +  ++    GL D  + 
Sbjct: 386 KPWLEDATRAKLLHHAKYDAHVFANE-GIKLAGITEDTMLQAYVLESH-RGVGLNDLAQR 443

Query: 126 LLGINISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR- 173
            LG +        D        +Q+            YAA D      L       +   
Sbjct: 444 YLGRS---GVSYEDLCGK--GAKQIGFDEVAVDKAGHYAAEDSDFTLQLHQVLRPMVAAD 498

Query: 174 LGRSDLATSCCNFLMDRAELDLLGWE 199
            G + +             ++  G +
Sbjct: 499 EGLNRIYLLEMQVSEVLTTVERNGVK 524


>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
 gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
          Length = 1001

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 58/210 (27%), Gaps = 56/210 (26%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----- 57
           T+   E   P   AA     +A DTET  L   +  L  + LS   G    I +      
Sbjct: 393 TVTTLEQLQPWIDAAYEKGYVAFDTETTSLDAMQAELVGISLSCKPGKACYIPLTHKDGE 452

Query: 58  --------------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
                                 L  ML D    KI    ++D  V+    GV V P   T
Sbjct: 453 GDLLGGGGLLPDQIPLDDALKALKPMLEDRGILKIAQNLKYDWLVMTRH-GVDVDPYDDT 511

Query: 104 KIASRLTRTYTNQHGLKDNLKELLG---------------------INISKAQQSSDWSA 142
            + S         +G+ +  +  LG                     + I KA        
Sbjct: 512 MLLSYTVDAGKGGNGMDELSERWLGHKPIPFKEVCGSGKSMITFDKVAIDKAT------- 564

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                    YAA D      L L    +L 
Sbjct: 565 --------AYAAEDADVTLRLWLTLKPRLA 586


>gi|222628416|gb|EEE60548.1| hypothetical protein OsJ_13896 [Oryza sativa Japonica Group]
          Length = 166

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           + ++QL   D    + +I         L   L D +   +    R D A L   +G+ V 
Sbjct: 27  VAVLQLCV-DRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVP 85

Query: 99  PVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAA 154
                +  +   L R    + GL+  ++E++G+ + K    + S W   +LS++Q +YA 
Sbjct: 86  RAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYAC 145

Query: 155 SDVVHLHALRLQF 167
           +D      +  + 
Sbjct: 146 ADAFASREVGRRL 158


>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
 gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
          Length = 943

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 14/163 (8%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEKREK 77
           ++  DTET GL      L  +  S   G    +     Q                   EK
Sbjct: 371 SVCFDTETTGLKALEVELVGIAFSWEKGKGYYVAFPEDQSETTAILEEFRPFFESTTIEK 430

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG------INI 131
           +    ++DI VL          +F T IA  L      +H +    +  L       + +
Sbjct: 431 VGQNLKYDIKVLSNYDMPVKGQLFDTMIAHYLINP-DMRHNMDVLSETYLNYQPVSIVEL 489

Query: 132 SKAQQSSDWSAD--DLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
              +  +  S     L ++Q +YA  D    + L+  F ++L+
Sbjct: 490 IGKKGKNQLSMRQVPL-EQQTEYAVEDADITYQLKEHFIKELE 531


>gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2]
          Length = 935

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 61/175 (34%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +    IAVDTET  +      L  V      G    + +A    +AP           L
Sbjct: 352 LKAAPLIAVDTETTSVNYMEAELVGVSFCIEPGAAAYVPVAHDYPDAPTQLSRDYVLSAL 411

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L  E   K+  + ++D  VL +   + +  + F T + S +  +   +H +      
Sbjct: 412 KPILESETIIKVGQHIKYDKNVLAHY-DITLNGIGFDTMLESYVLNSTAQRHDMDSLALA 470

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
            LG      ++ +   A  L+  Q+       YAA D      L      KL+  
Sbjct: 471 YLGHKTIHFEEIAGKGAKQLTFNQIGLEEAGPYAAEDADITMRLHQAIWAKLENE 525


>gi|115457358|ref|NP_001052279.1| Os04g0225100 [Oryza sativa Japonica Group]
 gi|38344132|emb|CAD39842.2| OSJNBb0072N21.11 [Oryza sativa Japonica Group]
 gi|113563850|dbj|BAF14193.1| Os04g0225100 [Oryza sativa Japonica Group]
          Length = 211

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           + ++QL   D    + +I         L   L D +   +    R D A L   +G+ V 
Sbjct: 72  VAVLQLCV-DRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVP 130

Query: 99  PVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAA 154
                +  +   L R    + GL+  ++E++G+ + K    + S W   +LS++Q +YA 
Sbjct: 131 RAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYAC 190

Query: 155 SDVVHLHALRLQF 167
           +D      +  + 
Sbjct: 191 ADAFASREVGRRL 203


>gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 896

 Score = 59.2 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 18/189 (9%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAGQKNAPNLVGMLVDEKREKIF 79
           I  DTET  + P +  L  +           + +      Q+    +  +  +       
Sbjct: 329 ICFDTETTDIQPLKAELVGIGFGIHPKKAWYVPLNGKLGKQRVLEGVKPLFENSAIGFYG 388

Query: 80  HYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQ 135
           H  ++D  VL    G++++ + F T +AS +   ++ QH L+    E  G   I IS+  
Sbjct: 389 HNVKYDWHVLQNE-GIQIQNICFDTILASYILNAHSRQHSLEVLALEYFGKVTIPISELI 447

Query: 136 QSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLM 188
                  + LS      +   +Y   DV     L+    ++L+     +L        L+
Sbjct: 448 GK---GKNVLSMRDVPIERVTEYCCEDVDFTCRLKEVLEKQLKERDLLNLYHQIELPLLV 504

Query: 189 DRAELDLLG 197
             A+++  G
Sbjct: 505 VLAKMERRG 513


>gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1]
 gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1]
          Length = 946

 Score = 59.2 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 62/188 (32%), Gaps = 34/188 (18%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGM--- 69
           A     +AVDTET  L      L  V L+        I +A G  +     P  V M   
Sbjct: 353 ASAARLVAVDTETSSLDAMEADLVGVSLALAPNDACYIPLAHGGTDMFSDKPEQVAMEDA 412

Query: 70  -------LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA-----SRLTRTYTNQH 117
                  L D+   K+F  G++D+ VL    G+ V P+  T +      +         H
Sbjct: 413 LAALKLLLEDDSVLKVFQNGKYDLNVLAR-VGIDVSPIEDTMVMSFDLDAGRGEGMGGGH 471

Query: 118 GLKDNLKELLGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHLHALRLQF 167
           G+ +  +  L   + K     D          +    L     +YAA D      L    
Sbjct: 472 GMDELSERHL---LHKPLAFKDVCGTGKKAIPFGEVPLDRA-TEYAAEDADVTLRLYRML 527

Query: 168 TEKLQRLG 175
             +L   G
Sbjct: 528 KPRLSEEG 535


>gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 939

 Score = 59.2 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 28/176 (15%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-------------M 69
            A+DTET  L      L  + LS   G    I I    K+ P++                
Sbjct: 357 FAIDTETNSLDTMVANLVGISLSYRPGEAFYIPIGHQNKSDPSIKKQLKLKDVLSVIKPY 416

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D   +K+    ++D  +     G+++  +  T + S       N+HG+    +  L  
Sbjct: 417 LEDPTVKKVGQNIKYDYRIFLKH-GIQMNSIEDTMLMSYSLDAGKNRHGMDLLSELHLNH 475

Query: 130 N---------ISKAQQSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLG 175
                     I K+Q + D+    +  EQ   YA  D      L   F ++L    
Sbjct: 476 KTISFKDVAGIGKSQVTFDF----VDIEQAKDYACEDADITLRLYKMFEKRLFNEN 527


>gi|322501847|emb|CBZ36929.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 754

 Score = 59.2 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 26/185 (14%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVDEKREKI 78
           IA+D E   L      +CI+ L+    TV II +    A   ++   L  +L      K+
Sbjct: 550 IALDLEGRSLGRMGS-ICIITLATYS-TVYIIDVVMLGAEALRSGSPLQRVLESRDIMKL 607

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------GLKDNLKELLGI 129
               R D   LF+ + VR++ V   +I+S      T+ H          L     E  GI
Sbjct: 608 MFDCRADCDALFFLYCVRLQNVCDLQISSCFALFPTSPHLPGMKSVFLALGLFTDEDTGI 667

Query: 130 NISKAQ--------QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLGRSD 178
             +               W    L+D  +QY A DV +  A +L   + ++   RLG + 
Sbjct: 668 KNAGRHLFNPRCGGSFDRWEERPLTDVLVQYCAVDVKYFFAAQLILWDHVEQGCRLGEAR 727

Query: 179 LATSC 183
           LA+ C
Sbjct: 728 LASVC 732


>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
 gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
          Length = 954

 Score = 59.2 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 41/197 (20%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------- 65
            +  + +AVDTET  L   +  L  +     +G    I +A   K A             
Sbjct: 351 LQMAELVAVDTETDNLDAMQANLVGISFGLENGEACYIPLAHKGKIAQPTQVDLFGESEA 410

Query: 66  ---------------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103
                                L  +L +    KI    ++D+ +     G+ ++ V F T
Sbjct: 411 ELDEVEALLPNQLNKADCLAQLKPILENPNIRKIGQNIKYDLTIFARY-GIELQGVAFDT 469

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157
            + S    + T +H + +  +  LG      ++ +      L+ +Q+      +YA  D 
Sbjct: 470 MLQSYTLDS-TGRHNMDNLAERYLGHQTIPFEELAGKGKHQLTFDQIELDKATEYAGEDA 528

Query: 158 VHLHALRLQFTEKLQRL 174
                L      +LQ+ 
Sbjct: 529 EITMKLHQLLWSELQKT 545


>gi|146096632|ref|XP_001467873.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134072239|emb|CAM70942.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
          Length = 754

 Score = 59.2 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 26/185 (14%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGMLVDEKREKI 78
           IA+D E   L      +CI+ L+    TV II +    A   ++   L  +L      K+
Sbjct: 550 IALDLEGRSLGRMGS-ICIITLATYS-TVYIIDVVMLGAEALRSGSPLQRVLESRDIMKL 607

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH---------GLKDNLKELLGI 129
               R D   LF+ + VR++ V   +I+S      T+ H          L     E  GI
Sbjct: 608 MFDCRADCDALFFLYCVRLQNVCDLQISSCFALFPTSPHLPGMKSVFLALGLFTDEDTGI 667

Query: 130 NISKAQ--------QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLGRSD 178
             +               W    L+D  +QY A DV +  A +L   + ++   RLG + 
Sbjct: 668 KNAGRHLFNPRCGGSFDRWEERPLTDVLVQYCAVDVKYFFAAQLILWDHVEQGCRLGEAR 727

Query: 179 LATSC 183
           LA+ C
Sbjct: 728 LASVC 732


>gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1]
 gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1]
          Length = 904

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R  DA ++D ET  L      +  V L+   G    + +A     AP+          L
Sbjct: 321 LRNADAFSIDLETNSLNYMDAEIVGVSLAVEPGQAAYLPVAHCGPGAPDQLDRDRVLDAL 380

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L  E+ EK+    ++D++VL    G+ +R V + + + S +  +   +H +     +
Sbjct: 381 RPLLEAEQPEKMGQNLKYDMSVLARY-GIELRGVAYDSMLESYVLDSTATRHDMDSLASK 439

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL-GRSD 178
            LG+ ++  +Q        +   ++       YAA D      L      +LQ   G   
Sbjct: 440 YLGVEVTSYEQLCGKGVRQVPFAEIDVERAGHYAAEDADIALRLHQLLYPRLQAESGLLR 499

Query: 179 LATS-CCNFLMDRAELDLLG 197
           + +      L   + ++  G
Sbjct: 500 VFSQLEMPLLPVLSRMERHG 519


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 69/216 (31%), Gaps = 30/216 (13%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +TT    E  +P   A      I  DTET  L     ++  + LS        I      
Sbjct: 339 LTTQTEVEALLPELLA---QKEICFDTETTSLNEMEAQIVGLALSYEIHKGYYILFPEDF 395

Query: 61  KNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTN 115
             A      L     +E   KI    ++D  +L    G+ V+   F T IA  L      
Sbjct: 396 SLAKQWFLLLKPFFENESILKIGQNLKYDFKILANY-GIEVKGEFFDTMIAHYLLNP-DM 453

Query: 116 QHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHA 162
           +H +    +  LG +       I K           L+      + Q +YA  D      
Sbjct: 454 RHNMDLLSEAYLGYSPISIETLIGKK------GKGQLTMRAVPAELQKEYAVEDTDVTLQ 507

Query: 163 LRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
           L+  F   L++     L        +   A+++  G
Sbjct: 508 LKHVFLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEG 543


>gi|254505350|ref|ZP_05117498.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222436194|gb|EEE42876.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 580

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD--EKREKIFHYG-RFDIAVLFYTF- 93
           RL  +QL  GD   D   + A Q   P +   +    E    +FH G  FDI  + + + 
Sbjct: 3   RLWTIQL--GDANTDEATVYADQIGFPPIKDAIKRLKEADRVVFHNGQGFDIHAINHFYP 60

Query: 94  GVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
           G      V+ T +A+RL       + L D  K  LG    K +   D+S    S E ++Y
Sbjct: 61  GTLTPHQVWDTLVAARLLNPSERANSLDDWGKR-LGEY--KGE-FKDFSR--FSKELVEY 114

Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           A  DVV    L  +   +L+  G+S    +   ++
Sbjct: 115 ARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYI 149


>gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902]
 gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902]
          Length = 998

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 58/179 (32%), Gaps = 30/179 (16%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------------- 68
            IAVDTET  L P +  L  V +  G+    +  I  G K    L               
Sbjct: 399 PIAVDTETTDLNPFKAELVGVGVCWGEANDALAYIPIGHKPPSELSEATPPQQLPLETVL 458

Query: 69  -----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
                 L   +  K     ++D  +L          V  T +A    R    +HGL    
Sbjct: 459 MALSPWLASPQHPKALQNAKYDRLILLRHGLTLNGVVIDTLLA-DYLRDAAAKHGLDLMS 517

Query: 124 KELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +   G         + K Q  +D + +  S     Y   DV     L LQ  + LQ +G
Sbjct: 518 EREFGFRPTTYGDLVGKKQTFADVAIEPAS----LYCGMDVHVTRRLALQLRQTLQAMG 572


>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
 gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
          Length = 902

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 32/211 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIV--QLSPGDGTVDIIRIA---------AGQKNAPN 65
            R    +A DTET GL    D   +V       +     + IA           Q++A  
Sbjct: 328 LRDDTIVAFDTETTGLDYEND--SLVGFSFCFNEDEAYYVPIAHFYLGVGEQISQEDAKI 385

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLK 124
            +  + + +   + H  +FD+  +    G     +F  + I + L    +    L    +
Sbjct: 386 AIKKIFNSRV--VGHNIKFDLHFVIRFLGEGELDIFADSMILAWLINPES-ALSLDKLSE 442

Query: 125 ELL-------GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           +LL         ++ K +  +   +  L +    YAA D      L   F E L+  G  
Sbjct: 443 KLLEHKMITFKESVKKGETFA---SVALEEA-CNYAAEDAYITLRLYYLFLEMLKDQGAE 498

Query: 178 DLATS----CCNFLMDRAELDLLGWENVDIF 204
            L          F+    ++++ G E   +F
Sbjct: 499 HLIEEAKEVEFPFIKTLLKMEMHGIELNSLF 529


>gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
 gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
          Length = 930

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 27/177 (15%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--------AAGQKNAPNLVGMLV 71
            + I +DTET  L P   RL  + ++   G    I I         + +    +L   L 
Sbjct: 352 AEQIGLDTETTSLDPMNARLVGISMAFAAGEAVYIPINHTFAEQQLSWETLLGSLKPYLE 411

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            +   KI    ++D  V     G++++ +     +AS +  ++   HGL +  +  LG+ 
Sbjct: 412 SKTLLKIGQNLKYDQHVFANH-GIQLQGIAGDAMLASYVLESHL-GHGLDELAQRWLGLE 469

Query: 131 I----------SKAQQSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGR 176
                      +K    +D     +S EQ  +YA  D      +      ++    R
Sbjct: 470 TITYESLCGKGAKQISFAD-----VSVEQATEYACQDADFALRIEAHLKAQMSDEQR 521


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 74/197 (37%), Gaps = 30/197 (15%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNLVGMLVD 72
           +A DTET GL  R D++        +     + +             +     L  ++  
Sbjct: 330 VAFDTETTGLDTRTDKMVGFSFCTSNEKAYYVPVGHSYLGVEEQVDPEDAVAALKKLMK- 388

Query: 73  EKREKIFHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           +K   +    +FD+++L+  +G+  V P   T I + LT    ++ GL    ++    ++
Sbjct: 389 QKI--VGQNLKFDLSLLYNQYGMEEVLPFADTMIMAWLTDP-GSRVGLDSLAQKFFKYDM 445

Query: 132 -------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-- 182
                   K +   ++S  +++D    YAA D      L     +K++    + L     
Sbjct: 446 KPFKEMVKKGE---NFSHVNIADA-TFYAAEDAWMTFLLYGAIKKKMELSSLTHLLKEAK 501

Query: 183 --CCNFLMDRAELDLLG 197
                F+     ++ LG
Sbjct: 502 DVEYPFINVLIRMERLG 518


>gi|145525585|ref|XP_001448609.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416164|emb|CAK81212.1| unnamed protein product [Paramecium tetraurelia]
          Length = 498

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 25/160 (15%)

Query: 24  AVDTETLGLMPRRD----------RLCIVQLSPGDGTVDI--IRIAAGQKNAPNLVGMLV 71
            +DTE       +D          ++C+ Q++  +    +    +    K    LV    
Sbjct: 344 GIDTE-----SYQDIPQNTFSAKNQVCLFQIALPNKIYLLNTTNLVNSIKYQQFLVQ-YA 397

Query: 72  DEKREKIFHYGRFDIAVLFYTFG---VRVRPVFCTKIASRLTRTYTN--QHGLKDNLKEL 126
                KI    + D   L    G   V +R     +++    + Y +  +  L    + L
Sbjct: 398 SSDCLKIGQNIKMDFLCLLVQIGKQDVDLRNFI--ELSQLFRQKYPDEKKTNLSFQCQRL 455

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           LG  + K +Q S W    L   Q+ YAA D +    L   
Sbjct: 456 LGKELDKVEQISHWQKRPLRSAQIHYAALDAIICLHLYNH 495


>gi|282895828|ref|ZP_06303911.1| hypothetical protein CRD_00333 [Raphidiopsis brookii D9]
 gi|281199216|gb|EFA74083.1| hypothetical protein CRD_00333 [Raphidiopsis brookii D9]
          Length = 446

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           +SDW    LS  QL+YAA DV++L A+  +  E
Sbjct: 3   TSDWGERPLSSRQLKYAAMDVIYLAAVHHRLLE 35


>gi|116309147|emb|CAH66248.1| OSIGBa0101A01.4 [Oryza sativa Indica Group]
          Length = 211

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           + ++QL   D    + +I         L   L D +   +    R D A L   +G+ V 
Sbjct: 72  VAVLQLCV-DRRCLVFQILHADYLPDALSRFLADPRYTFVGVGVRDDAARLRVGYGLEVP 130

Query: 99  PVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAA 154
                +  +   L R    + GL+  ++E++G+ + K    + S W   +LS++Q +YA 
Sbjct: 131 RAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYAC 190

Query: 155 SDVVHLHALRLQF 167
           +D      +  + 
Sbjct: 191 TDAFASREVGRRL 203


>gi|297696371|ref|XP_002825370.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
           [Pongo abelii]
          Length = 572

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 25/144 (17%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGR--FDIAVLFYTF 93
           +LC +Q++  +  V +  I      A N  L  +L D++  K+ H  R   D   L + +
Sbjct: 173 KLCWLQVAT-NCRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQY 229

Query: 94  GVRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS--- 137
           G+ +  VF T++A     S  T  Y       L+++L + L +       + K Q+    
Sbjct: 230 GILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVAPKYLSFLEKRQKLIQE 289

Query: 138 --SDWSADDLSDEQLQYAASDVVH 159
               W    +S   L+  A +  +
Sbjct: 290 NPEVWFIRPVSPSLLKILALEATY 313


>gi|47230240|emb|CAG10654.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 464

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 30  LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAV 88
           +       RLC +Q++          +  G     N +  +L  ++  K+ H  R     
Sbjct: 39  MSEH---GRLCWLQIATKKRVYLFDILLLGSMAFRNGISSILESKEILKVLHDCREIAGF 95

Query: 89  LFYTFGVRVRPVFCTKIASRLT 110
           L   FGV++  VF T++A  + 
Sbjct: 96  LMGQFGVKLNNVFDTQVADLMC 117


>gi|297296193|ref|XP_002804776.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 2
           [Macaca mulatta]
          Length = 572

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 25/144 (17%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGR--FDIAVLFYTF 93
           +LC +Q++  +  V +  I      A N  L  +L D++  K+ H  R   D   L + +
Sbjct: 173 KLCWLQVAT-NCRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQY 229

Query: 94  GVRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS--- 137
           G+ +  VF T++A     S  T  Y       L+++L + L +       + K Q+    
Sbjct: 230 GILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVAPKYLSFLEKRQKLIQE 289

Query: 138 --SDWSADDLSDEQLQYAASDVVH 159
               W    +S   L+  A +  +
Sbjct: 290 NPEVWFIRPVSPSLLKILALEATY 313


>gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N]
 gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N]
          Length = 904

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 39/192 (20%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------AGQKNAPNL 66
           A     +A+DTET  L   + RL  + ++   G    I +A            Q+    L
Sbjct: 326 AEATPLVALDTETTSLDEMQARLVGLSMAVEPGVACYIPLAHRGPEAGTQLPKQEVLERL 385

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
            G L D  R K+ H+ ++D  V     G+ +R V   T + + +  ++    GL D  + 
Sbjct: 386 RGWLEDATRSKLLHHAKYDTHVFANE-GIALRGVTEDTMLQAYVLESH-RGVGLNDLAQR 443

Query: 126 LLGINISKAQQSSDWSADDL---SDEQL-----------QYAASDVVHLHALRLQFT--- 168
            LG         S  + +DL     +Q+            YAA D      L        
Sbjct: 444 YLG--------RSGVNYEDLCGKGAKQIGFDEVAVDRAGFYAAEDADFTLQLHQALRPGV 495

Query: 169 -EKLQRLGRSDL 179
             +L+R+ + +L
Sbjct: 496 TGELERIYKLEL 507


>gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 911

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 24/178 (13%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
            +  A DTET  L   + +L  +  +   G    + +A     AP           L  +
Sbjct: 331 AELFAFDTETTSLDYMKAQLVGMSFAVKAGEAVYLPLAHDYPGAPEQLSLEFVMQKLGPI 390

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L DE + K+    ++D +VL    G  +  + F T + S +  +   +H +     + LG
Sbjct: 391 LADENKAKVGQNLKYDKSVLANA-GFALNGIKFDTMLESYVFNSVGTRHDMDSLALKYLG 449

Query: 129 INISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177
               K     D        L+  Q++      YAA D      L      K+    + 
Sbjct: 450 H---KNISFEDIAGKGKKQLTFNQIELEKAAPYAAEDADITLRLHEVLWPKIAADEKL 504


>gi|301619865|ref|XP_002939304.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Xenopus
           (Silurana) tropicalis]
          Length = 1431

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 32/173 (18%)

Query: 16  AARYVDAIAVDTETLGLMPRRD---------RLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           + +  D +  D E                  ++ ++Q+   +    +  I+        L
Sbjct: 66  SLQEEDVLGFDIE-------WPPIYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGL 118

Query: 67  VGMLVDEKREKIFHY--GRF-----DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +L DE  +K+     G       D  +    F         +++A++  R    +  L
Sbjct: 119 RRLLEDESVKKVGVGIEGDQWKLMSDYELKLKGFIEL------SEVANQKLRC-KEKWSL 171

Query: 120 KDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
              +K L    + K    + S+W    LS +Q  YAASD      +  +    
Sbjct: 172 NGLVKHLFKKQLLKDSSIRCSNWDIFPLSTDQKLYAASDAYAGLLIYQKLECM 224


>gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
 gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
          Length = 1020

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 51/141 (36%), Gaps = 20/141 (14%)

Query: 9   GDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA---------- 57
            ++ A CA AR    +A DTET  L P +  L  V L+        I +A          
Sbjct: 418 DELKAWCAKARDQGFVAFDTETTSLDPMQADLVGVSLALAPNEACYIPLAHVGAGDGLFT 477

Query: 58  --------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
                           L GML D    KI H  ++D AVL    G+ V P  CT   S  
Sbjct: 478 EGLLPGQIPFNDALAALKGMLEDGGTLKIGHNVKYDAAVLARH-GITVAPYDCTMCMSYA 536

Query: 110 TRTYTNQHGLKDNLKELLGIN 130
                  HG+ +   + LG  
Sbjct: 537 LDAGRGGHGMDELSIKYLGHT 557


>gi|89267461|emb|CAJ83573.1| Werner syndrome homolog (human) [Xenopus (Silurana) tropicalis]
          Length = 1171

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 32/173 (18%)

Query: 16  AARYVDAIAVDTETLGLMPRRD---------RLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
           + +  D +  D E                  ++ ++Q+   +    +  I+        L
Sbjct: 66  SLQEEDVLGFDIE-------WPPIYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGL 118

Query: 67  VGMLVDEKREKIFHY--GRF-----DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
             +L DE  +K+     G       D  +    F         +++A++  R    +  L
Sbjct: 119 RRLLEDESVKKVGVGIEGDQWKLMSDYELKLKGFIEL------SEVANQKLRC-KEKWSL 171

Query: 120 KDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
              +K L    + K    + S+W    LS +Q  YAASD      +  +    
Sbjct: 172 NGLVKHLFKKQLLKDSSIRCSNWDIFPLSTDQKLYAASDAYAGLLIYQKLECM 224


>gi|312374647|gb|EFR22158.1| hypothetical protein AND_15698 [Anopheles darlingi]
          Length = 758

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 11/146 (7%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            IA D E           R  ++QL        + +++  +     L+ +L  ++   + 
Sbjct: 205 PIAFDLEWPF-SFKTGPGRTALLQLCVEPDRCILYQLSCLKHLPIALLQLLRHKRVILLG 263

Query: 80  HYGRFDIAVLFYTF------GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI-- 131
              + D+  L   F         +                T    +   ++++L   +  
Sbjct: 264 VNIKNDLRKLARDFPEVSSVDSIIERCIDLGQFYNKLHNRTGIWSMDRLVQQVLKQRVNK 323

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDV 157
            K  + S W    LS++Q +YAA DV
Sbjct: 324 DKRVRMSKWDVLPLSEDQKRYAAIDV 349


>gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255]
 gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255]
          Length = 932

 Score = 58.9 bits (142), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 66/212 (31%), Gaps = 41/212 (19%)

Query: 19  YVDAIAVDTETLGLMPRRDRL------CIVQLSPGDGTVDIIRI---------------- 56
               +AVDTET GL    D +      C+   S   G    I +                
Sbjct: 343 QRGYVAVDTETTGLN---DMIVDLVGICL---SVEIGEACYIPVGHTNGENDLFGGASLC 396

Query: 57  ---AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                  +    L  +L D    KI    ++D  +      V + PV  T + S      
Sbjct: 397 NGQINLDEALEILRPVLQDPSIIKIGQNVKYDTKIFARY-DVNLAPVDDTMLLSYAINGG 455

Query: 114 TNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
            + HG+    +  L          +   + +  +    ++D  + YAA D      L   
Sbjct: 456 KHNHGMDYLSERYLNHKPISIKTLLGSGKSAITFDKVSINDA-VNYAAEDADITLRLWKL 514

Query: 167 FTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
           F   L     + +  +     +   A++++ G
Sbjct: 515 FKPMLHESSVTKIYETLERPLIPVLAKMEMNG 546


>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
 gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
          Length = 926

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R     A DTET  L P +  L  + ++   G    +        AP           L
Sbjct: 344 LRAAGQFAFDTETDSLDPLQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQALAQL 403

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D    K+  +G++D+ V+             T + S +  + + +H +    K  
Sbjct: 404 APLLTDPALRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRY 463

Query: 127 LGINIS-------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           LG +         K  +   ++   L D   +YAA D      L      KL   
Sbjct: 464 LGYDTVKYEDVCGKGAKQIKFAQVSLEDA-TRYAAEDADITLRLHQVLGPKLSAE 517


>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 930

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 24/212 (11%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---- 65
           +  E A +   +   DTET GL     D + +   +   G    +     ++ A      
Sbjct: 349 LAKELAGQ--KSFCFDTETTGLDALVADIVGL-SFAFEKGKAYYVPTPDSREQALEIVNI 405

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              +L D   EK+    ++DI +L          +F T +A  L    T +HG+    + 
Sbjct: 406 FKPVLEDANIEKVGQNIKYDILLLSRYDVKVKGTLFDTMLAHYLIDPDT-RHGMDVLAEN 464

Query: 126 LLG---INISK------AQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLG 175
            LG   ++I+K       +Q    +  D+  E + +YA+ D      L+ +F   L+   
Sbjct: 465 YLGYIPVSITKLIGEKGKKQG---NMRDVEIELIKEYASEDADITLQLKEKFEPLLEETA 521

Query: 176 RSDLATS-CCNFLMDRAELDLLGWE-NVDIFS 205
              LA       +   +E++  G + +VD+ S
Sbjct: 522 TLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLS 553


>gi|71982776|ref|NP_001021324.1| hypothetical protein C10G6.1 [Caenorhabditis elegans]
 gi|51536916|gb|AAU05593.1| Hypothetical protein C10G6.1b [Caenorhabditis elegans]
          Length = 569

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 31/187 (16%)

Query: 23  IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKREKIF 79
           + VD E  L        L ++        + I  +A+           G+L  EK  K+ 
Sbjct: 327 VGVDGEIFLS-------LGVI---ATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN-------LKE------- 125
           H  R   ++L + + V +R VF T++A  L +       L +        L+        
Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHEKFNKSLNEMRPISFINLQRVYYPQSI 436

Query: 126 -LLGINISKAQQSSDWSADDLSDE-QLQYAASDVVHLH-ALRLQFTEKLQRLGRSDLATS 182
            L  +   K     +W    +++E QL     +   L  AL    +  +    R      
Sbjct: 437 MLSDVTPRKMSMCPNWGVRPITEEFQLT-IVEEAHCLLSALYQSLSNLIPVHLRGVFEDK 495

Query: 183 CCNFLMD 189
           C   L+ 
Sbjct: 496 CIEVLLA 502


>gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301]
 gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5
           exonuclease [Shigella flexneri 2a str. 301]
          Length = 928

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A DTET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 346 LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAA--SDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA  +DV     L L+    LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEHADVT--LQLHLKMWPDLQK 518


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 20/168 (11%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEKRE 76
            ++  DTET  +      L  +  S  +     + +   +K               +  E
Sbjct: 378 KSVCFDTETTDINALHADLVGMSFSYKEREAYYVAVPKDKKEIQAIVDEFKPFFEHKSIE 437

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS- 132
           KI H  ++DI VL         P+F T IA  L +  + Q G+    +  L    ++I  
Sbjct: 438 KIAHNMKYDIQVLHRYGVQFAGPLFDTMIAHYLIQPESKQ-GMDFLAEYYLNYTPVSIET 496

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173
                 K Q     +  DL  E +  YA  D      L+  F  ++++
Sbjct: 497 LIGKKGKGQG----NMGDLQPEAISDYACEDADITFQLKQLFAPQIEK 540


>gi|146098911|ref|XP_001468505.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134072873|emb|CAM71589.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
          Length = 548

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 13/159 (8%)

Query: 18  RYVDAIAVDTETLGLMPRRDR-LCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKR 75
           R++  + +D+E       RD  L +VQ +       + I    G+     +   L D   
Sbjct: 10  RHLKIMGMDSE-----WFRDLPLAVVQFATSSHCFVLHISFFDGRILPAAVKEALCDPSI 64

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINI--S 132
            K       D++ L     + ++ V    + ++        Q  LK   K +  ++I   
Sbjct: 65  IKCGVGVSGDVSRLQKEQNITIQSVLDVAQYSALFGLHQGAQSNLKVLAKSVANLSIEKD 124

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVV--HLHALRLQFTE 169
           K    S+W    LSD ++ YAA D +  +L    +    
Sbjct: 125 KMITRSNWEL-PLSDSRVNYAAEDALASYLVGRAVMLKA 162


>gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
 gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
          Length = 924

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +  + I+ DTET  L   R RL  V L+   G    I +      AP           L
Sbjct: 342 LQQAELISFDTETDALDAMRARLVGVSLAVEPGRAAYIPVGHDYPGAPAQLPMQQVLDAL 401

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  ++K+  +G++D+ VL    GV V+     T + S +  +   +H +      
Sbjct: 402 RPVLQDPAKKKLGQHGKYDLHVLRRH-GVDVQGYHDDTMLESFVLNSTATRHDMDSLALR 460

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            LG +  K +  +   A  +   Q+      +YAA D      L      +L   
Sbjct: 461 YLGYSTIKFEDVAGKGAKQIPFSQVGIDEASRYAAEDADITLRLHRALQPQLLAE 515


>gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 987

 Score = 58.9 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 78/213 (36%), Gaps = 37/213 (17%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPN------ 65
           A     AIAVDTET  + P R    +V LS    PG G    +R    + +         
Sbjct: 372 ALEAAQAIAVDTETTAIRPMRAD--LVGLSFAVEPGSGWYVPVRSPEPETHLDEATVLGA 429

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-----------PVFCTKIASRLTRTYT 114
           L  +L D  + K+ H  ++DI VL    GV +R           P   + IAS L     
Sbjct: 430 LRPVLEDATKPKLGHNLKYDILVLRRA-GVELRGHVSTVGAGDWPGGDSMIASYLVDASR 488

Query: 115 NQHGLKDNLKELL---GINIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           + H +      LL    I IS      K Q++ D     L      YAA D      L  
Sbjct: 489 SSHSMDALAMALLERRNIPISELIGTGKKQKTFD--TVPLDRA-TPYAAEDADVTLQLCQ 545

Query: 166 QFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
           +   +LQ +    L        +   AEL+  G
Sbjct: 546 RLLPELQEMELGALFGGLEMPLVDVLAELEWNG 578


>gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134]
 gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134]
          Length = 955

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 60/183 (32%), Gaps = 22/183 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVD 72
            +  D    DTET  L+ +   L  +  +   G    +   A QK A         +  D
Sbjct: 359 LKQQDEFCFDTETTSLVAQDAELVGIAFATYAGEAYYVPTPADQKEAQAIVDEFKEVFED 418

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG--- 128
           E   KI    ++D  VL    G+  +   F T +A  L +    +H +    K  L    
Sbjct: 419 ESIGKIAQNLKYDWVVLKNY-GIEPKGKFFDTMLAHYLLQP-DMRHNMDVLAKSYLNYEP 476

Query: 129 INI--------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           + I         K     D   D +++    YA  D      L+  F  +++       A
Sbjct: 477 VEITSLIGKKGKKQGSMRDVELDKITE----YAGEDADITLQLKEIFDAQIKAQDLRHPA 532

Query: 181 TSC 183
              
Sbjct: 533 PED 535


>gi|71982768|ref|NP_001021323.1| hypothetical protein C10G6.1 [Caenorhabditis elegans]
 gi|14573791|gb|AAB00620.2| Hypothetical protein C10G6.1a [Caenorhabditis elegans]
          Length = 574

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 31/166 (18%)

Query: 23  IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKREKIF 79
           + VD E  L        L ++        + I  +A+           G+L  EK  K+ 
Sbjct: 327 VGVDGEIFLS-------LGVI---ATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN-------LKE------- 125
           H  R   ++L + + V +R VF T++A  L +       L +        L+        
Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHEKFNKSLNEMRPISFINLQRVYYPQSI 436

Query: 126 -LLGINISKAQQSSDWSADDLSDE-QLQYAASDVVHLH-ALRLQFT 168
            L  +   K     +W    +++E QL     +   L  AL    +
Sbjct: 437 MLSDVTPRKMSMCPNWGVRPITEEFQLT-IVEEAHCLLSALYQSLS 481


>gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
 gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
          Length = 911

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 66/203 (32%), Gaps = 33/203 (16%)

Query: 17  ARYVDAIAVDTETLGLMPR-----------RDR--LCIVQLSPGDGTVDIIRIAAGQKNA 63
           A    A A+D ET  L                +    +  ++ G    D   +       
Sbjct: 337 AISAGACALDIETDSLDAMLANPVGFSLAVSPKQAAYLPLIAEGQRKFDDDAVRE----- 391

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122
             LV +        I H  ++D  VL    GV  + + F T +A+ L  T  N +G+   
Sbjct: 392 -RLVRLTSSPSVRIIGHNFKYDYKVLRRW-GVVTKNLAFDTMVAAWLLDTTANSYGMDPL 449

Query: 123 LKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
              LLG         + K     D S +  +    +YAA D          F  +L+  G
Sbjct: 450 AASLLGYKTISFKDVVPKDGLFQDISVETAT----RYAAEDADITFRFYELFRRQLKERG 505

Query: 176 RSDLATS-CCNFLMDRAELDLLG 197
              L        +   AE++  G
Sbjct: 506 LEKLFFELEMPLVPILAEMECAG 528


>gi|281420237|ref|ZP_06251236.1| 3'-5' exonuclease domain protein [Prevotella copri DSM 18205]
 gi|281405732|gb|EFB36412.1| 3'-5' exonuclease domain protein [Prevotella copri DSM 18205]
          Length = 205

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 17/164 (10%)

Query: 23  IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + VDTE              + ++Q+S  D T  + R+       P ++ +L D    K+
Sbjct: 47  LGVDTETRPSFKRGQAYH--VSLLQVSTHD-TCYLFRLHHTGI-TPAIIRLLEDTTVPKV 102

Query: 79  ---FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
              +H    D+  L      +       +  ++          L+     L    ISKAQ
Sbjct: 103 GLSWHD---DLLQLHKRAAFKAGYFIELQDVAK--NFGIADMSLQKLYANLFHQKISKAQ 157

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           + S+W A DL + Q  YAA+D      L  +F ++L   G  +L
Sbjct: 158 RLSNWEASDLKESQALYAATDAWCCINLYEEF-KRLSATGDYEL 200


>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 936

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 24/183 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVD 72
            +  D    DTET  L P + +L  +  +   G    + I A +K A         +L  
Sbjct: 358 LKLQDTFCFDTETTSLDPYQAQLVGISFAYYPGEAYYVPIPAERKAAQAIIEEFRPLLES 417

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---- 128
             + K+    ++D  +L         P+F T +A  L       H +    +  L     
Sbjct: 418 TTQCKVGQNLKYDNLILRTYGIEVAPPIFDTMVAHYLV-APDKPHNMNAIAESYLNYAPI 476

Query: 129 -----INISKAQQSSDWSAD----DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
                I   K+ Q S         +L  E   YA  D      L+      +++   S L
Sbjct: 477 PIEALIGSRKSTQKS---MRMVDVELVKE---YACEDADITLQLKRLLELNIKQENLSKL 530

Query: 180 ATS 182
              
Sbjct: 531 FYE 533


>gi|123472408|ref|XP_001319398.1| HRDC domain containing protein [Trichomonas vaginalis G3]
 gi|121902180|gb|EAY07175.1| HRDC domain containing protein [Trichomonas vaginalis G3]
          Length = 442

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 20/159 (12%)

Query: 28  ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD-- 85
           E   +       C++ L      + II +   +     L  +L +++  KIF    FD  
Sbjct: 184 EIHRVRTYIPFPCLIVLYSPYVGIFIIDLLKLRCCTGILSELLYNKEIIKIF----FDKE 239

Query: 86  -IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADD 144
              ++  + G+ V P         L  T + +H  K     L  +         DW    
Sbjct: 240 LFKIMHESLGIYVYPYVD----LSLVNTQSLEHIFKQEFDGLCVV---------DWRIRP 286

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            +DE +  A   V  L  + ++    L  + + ++    
Sbjct: 287 FTDELINIAVRRVNVLPKITIKSKIDLNIINKMNVHEKE 325


>gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1]
 gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1]
          Length = 941

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 57/179 (31%), Gaps = 27/179 (15%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------------- 65
               IAVDTET  + P R  L  V LS   G    I +A       +             
Sbjct: 357 ACGRIAVDTETDNVDPVRANLVGVSLSTAPGKACYIPLAHIGDGLLSETPRQIAMDAALA 416

Query: 66  -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L      KI    ++D+ VL    GV V P   T + S         HG+ +  +
Sbjct: 417 KLKPLLEAAHILKIGQNIKYDMVVLAKY-GVDVAPYDDTMLLSYDLDAGLGGHGMDELAQ 475

Query: 125 ELLGIN---------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
             L              K+Q S D     L     +YAA D      L      +L   
Sbjct: 476 RHLDHGCIEFKTVCGTGKSQISFD--KVTLDVA-TEYAAEDADVTLRLWQLLKGRLAPE 531


>gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
 gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
          Length = 908

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 19/196 (9%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGCYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 LGINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L     K +   Q +D +  ++S E    Y++ D      L   FT+KL+      L   
Sbjct: 452 LMHKNIKYEDVIQKND-NFANISLEMATSYSSEDADITFRLFNLFTKKLKEDKLDRLMHE 510

Query: 183 -CCNFLMDRAELDLLG 197
               F     E++  G
Sbjct: 511 IEMPFNKVIIEMEENG 526


>gi|170084825|ref|XP_001873636.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651188|gb|EDR15428.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 398

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 21/182 (11%)

Query: 4   IRVHEGDIPA-ECAARYVDAIAVDTE----TL---GLMPRRDRLCIVQLSPGDGTVDIIR 55
           + + + ++   E +     A   D E     +   G  P    + +VQL+  D T+ +++
Sbjct: 34  LYIQDAELANKELSILTPGAFGFDLEWKPNFVKGEGENP----VALVQLAN-DETILLLQ 88

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----- 110
           I+A ++    L  +L      K+    + D   L+    V         + +R       
Sbjct: 89  ISAMKEFPTKLEEILGSSDFLKVGVAIQHDTQKLYKDHQVSTYNCVDLSLLARSIDNDRW 148

Query: 111 -RTYTNQHGLKDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
              Y +  GL   ++      + K +   S+W    L D Q  YAA+D    + +  +  
Sbjct: 149 KGKYNSSLGLARVIESYEYRLLGKGKISRSNWEGQ-LRDPQQLYAANDAHAGYTIYRRLI 207

Query: 169 EK 170
             
Sbjct: 208 AM 209


>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
 gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
          Length = 939

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 65/209 (31%), Gaps = 31/209 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-------VDIIRIAAGQKNAPN---- 65
               D  A+DTET  L     ++  V  +  +            + +      AP     
Sbjct: 349 LEASDVFAIDTETTSLNAMEAKIVGVSFAYAEKKDQAWQNFAAYVPLTHDYDGAPEQLPI 408

Query: 66  ------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHG 118
                 L  +L +   +K+    ++D  +     G+ V+ + + T + S    +   +H 
Sbjct: 409 QEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNA-GIEVQGMAYDTMLESYCFNSVATRHN 467

Query: 119 LKDNLKELLGIN--ISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEK 170
           + D     L  +    K    +       +  Q++      YAA D      L      K
Sbjct: 468 MDDLALTYLNHSTIHFKDIAGT--GKKQKTFNQIELETASPYAAEDADITLQLHQTLLPK 525

Query: 171 LQRL-GRSDLATS-CCNFLMDRAELDLLG 197
           LQ       +        +   A+++  G
Sbjct: 526 LQAEPTLYKVFEEIEMPLMPVLAKMERNG 554


>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
 gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
          Length = 954

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 41/197 (20%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------- 57
            +  + +AVDTET  L   +  L  +     +G    I +A                   
Sbjct: 351 LQMAELVAVDTETDNLDAMQANLVGISFGLENGEACYIPLAHKGKITQPTQVDLFGESEA 410

Query: 58  ---AGQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103
                +   PN          L  +L +    KI    ++D+ +     G+ ++ V F T
Sbjct: 411 ELDEVEALLPNQLNKADCLVQLKPILENPNIRKIGQNIKYDLTIFARN-GIELQGVAFDT 469

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157
            + S    + T +H + +  +  LG      ++ +      L+ +Q+      +YA  D 
Sbjct: 470 MLQSYTLDS-TGRHNMDNLAERYLGHQTIPFEELAGKGKHQLTFDQIELDKATEYAGEDA 528

Query: 158 VHLHALRLQFTEKLQRL 174
                L      +LQ+ 
Sbjct: 529 EITMKLHQLLWSELQKT 545


>gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886]
 gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886]
          Length = 931

 Score = 58.5 bits (141), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +  D +A DTET  L      L  +  +  +G    + +A    +AP           +
Sbjct: 348 LKNADVVAFDTETDSLDYMEANLVGISFAVAEGEAAYLPLAHDYLDAPKQLDRDWVLAEM 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
              L D    K+    ++D +VL     + +R + + T + S +  +   +H +      
Sbjct: 408 KLWLEDAGALKVGQNLKYDASVLARY-DIAMRGIAYDTMLESYVFNSVAGKHDMDSLALR 466

Query: 126 LLGINISKAQQSSDW------SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            L        Q   +          L+  Q++      YAA D      L      +L  
Sbjct: 467 YL------QHQCISFEEIAGKGKKQLTFNQIELDQAAPYAAEDADVTLRLHNALMAQLNN 520

Query: 174 LGRSDLA--TSCCNFLMDRAELDLLG 197
             +  +         +   + ++  G
Sbjct: 521 DEKLKVIFEQYEMPLVPVLSRMERHG 546


>gi|195328899|ref|XP_002031149.1| GM25820 [Drosophila sechellia]
 gi|194120092|gb|EDW42135.1| GM25820 [Drosophila sechellia]
          Length = 355

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
            R    IA+D E           C+VQ+S       I      + +   L  +L D K+ 
Sbjct: 287 LRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKD-YIFDTLILRDDMHILNLVLTDPKKL 345

Query: 77  KIFHY 81
           KI H 
Sbjct: 346 KILHG 350


>gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220]
 gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220]
          Length = 928

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRDRALALL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE   K+    ++D  +L     + +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDENAHKVGQNLKYDRGILANY-DIELRGIVFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQK 518


>gi|255320255|ref|ZP_05361440.1| 3'-5' exonuclease [Acinetobacter radioresistens SK82]
 gi|255302694|gb|EET81926.1| 3'-5' exonuclease [Acinetobacter radioresistens SK82]
          Length = 218

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 11/134 (8%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+  +  V + ++     N   L  +L ++K+ K+    + D+  LF   G+ ++  
Sbjct: 73  LIQLATAE-KVFLFQLNPDILN--FLKPILANQKQVKVGFGLKNDV-HLFRKKGIELQS- 127

Query: 101 FCTKIASRL--TRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASD 156
             T   S+      +    GLK+ +  L   N  K      SDWS   LS  Q+ YAA+D
Sbjct: 128 --TVELSKCFSAFGFKQPIGLKNAVALLFQQNFPKFKKISISDWSNMRLSSTQIGYAAAD 185

Query: 157 VVHLHALRLQFTEK 170
           V     +  +  ++
Sbjct: 186 VYAALLVFQELRKR 199


>gi|157135976|ref|XP_001663646.1| hypothetical protein AaeL_AAEL013455 [Aedes aegypti]
 gi|108870061|gb|EAT34286.1| conserved hypothetical protein [Aedes aegypti]
          Length = 339

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 15/193 (7%)

Query: 2   TTIRVHEGDI---PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
             I V + DI    A    R    +A+  E +          ++ ++  D          
Sbjct: 104 NHIFVFQTDIKYHDAIKYLRTQRLLAIGMEGIEGGRHSTSPSLLSIATPDRIYVFD--VM 161

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRPVFCTKIAS-RLTRTYTN 115
                 +L  +L D K  ++ H  R   D  VL + +   +   F T +A    T  Y +
Sbjct: 162 WMNVPKDLRAILGDPKVRRVAHNARLVED--VLRHRYQAPLGKCFDTLVAHISTTNDYDD 219

Query: 116 QHGL--KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           QH L  ++ L + L +  +    S  ++   L++ Q + AA +V  L AL+     ++  
Sbjct: 220 QHELSIQECLAKYLNLPSNFFDSSIKFNNRPLNESQRKAAAKNVAFLLALQDYLVHEVML 279

Query: 174 LGRSDLATSCCNF 186
                   SCC +
Sbjct: 280 E---PFYHSCCQY 289


>gi|119482642|ref|XP_001261349.1| 3'-5' exonuclease/helicase (Wrn), putative [Neosartorya fischeri
           NRRL 181]
 gi|119409504|gb|EAW19452.1| 3'-5' exonuclease/helicase (Wrn), putative [Neosartorya fischeri
           NRRL 181]
          Length = 383

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 26/183 (14%)

Query: 39  LCIVQLSPGDGTVD----IIRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDIAVLFYT 92
           + ++Q++  +        + + A   ++  +P+L  +L   K  K     + D   L   
Sbjct: 174 VSLIQIANAERIALFQIALFKPARTPEDFISPSLRKILESPKITKAGVAIKADCTRLKNF 233

Query: 93  FGVRVRPVFCTKIASRLTRT--------YTNQHGLKDNLKELLGINISKAQ--QSSDWSA 142
            G+ VR +F      +L +               L + ++E  G+ ++K    +  DWS 
Sbjct: 234 LGINVRGIFELSHLYKLVKYCQSDPALINRRPVNLSEQVEEHFGLPLAKDDDVRCGDWST 293

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD--LLGWEN 200
             L+  Q+QYAA+D      L      K +       A +    L   AELD  +   E 
Sbjct: 294 A-LNYRQVQYAANDSYACLCLFNTMDAKRR-------ALTPMPPLPAHAELDQPIRLVEE 345

Query: 201 VDI 203
           +D+
Sbjct: 346 LDV 348


>gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a]
          Length = 908

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 19/196 (9%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 LGINISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           L     K +   Q +D +  ++S E    Y++ D      L   FT+KL+      L   
Sbjct: 452 LMHKNIKYEDVIQKND-NFANISLEMATSYSSEDADITFRLFNLFTKKLKEDKLDRLMHE 510

Query: 183 -CCNFLMDRAELDLLG 197
               F     E++  G
Sbjct: 511 IEMPFNKVIIEMEENG 526


>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
 gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
          Length = 926

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               +  A DTET  L     ++  V  +   G    +        AP           L
Sbjct: 344 LSKAELFAFDTETTSLNYMEAKVVGVSFAVAPGEAAYVPFGHDYLGAPEQLSEEQVLGKL 403

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE  +K+    ++D +VL    G+ ++ + F T + S +  +  N+H +      
Sbjct: 404 KPLLEDENVKKVGQNLKYDASVLANH-GIALQGIAFDTMLESYVVNSTANRHDMDTLALA 462

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            LG      ++ +   A  L+  Q+Q      YAA D      L      +++ 
Sbjct: 463 HLGHTNISFEEIAGKGAKQLTFNQIQLDQAAPYAAEDADITLRLHQALWPQVEA 516


>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 930

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVG 68
               IA+DTET  L      L  V  +  +G    + +      AP           L  
Sbjct: 352 QAKCIAIDTETDSLDYMVAHLVGVSFALENGEAAYLPLRHDYLGAPQQVDFQTALSLLKP 411

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L + +  K+    ++D+++     G+ V+ V + T + S +  + T +H + +  K  L
Sbjct: 412 VLENPEIHKVGQNIKYDLSIFARH-GIEVQGVSYDTMLLSYVLDS-TGRHNMDELAKRYL 469

Query: 128 GIN 130
           G  
Sbjct: 470 GHQ 472


>gi|313221140|emb|CBY31966.1| unnamed protein product [Oikopleura dioica]
 gi|313234849|emb|CBY24793.1| unnamed protein product [Oikopleura dioica]
          Length = 581

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 31/191 (16%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQKNAPN-------LVGM 69
               + VD E   L P   ++ ++Q+          +  +A G  +          L  +
Sbjct: 274 RSKYLLVDMEGDQLGP-NGKITLLQINNYTSGNCYLLDILAVGDSSLRERDPQIGWLRDI 332

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS--------RLTRTYTNQ----- 116
               +  K F  G  D A LF ++ + V      ++          +LT    +      
Sbjct: 333 FQYPRVIKFFWGGVSDTANLFASYEISVAGFIDLQVVESQYRQRLIKLTNGQQDPTKKHP 392

Query: 117 HGLKDNLKELLGINI-----SKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFT 168
            GL+   +     ++      KA+  +D   WS   L+ + L+YAA DV  L  +   F 
Sbjct: 393 LGLEAAYEYFTDKSLIRYKQGKAKHKTDYHVWSRRPLTSQLLKYAAFDVAALRPIVHVFV 452

Query: 169 EKLQRLGRSDL 179
             L+       
Sbjct: 453 NNLELWRWGAW 463


>gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354]
          Length = 955

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 34/185 (18%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-----GQKN--------------A 63
           +AVDTET  L   +  L  V L+ G      I +       G  +               
Sbjct: 359 VAVDTETSALDAMQADLVGVSLAIGPNQACYIPLGHFNEGGGGDDMFAEKPQQIETEVAL 418

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI------ASRLTRTYTNQH 117
             L  +L  +   K+    ++D+ VL    G+ V P+  T I      A R        H
Sbjct: 419 AKLKPLLESDAVVKVGQNIKYDLNVLARH-GIAVAPIEDTMIVSFALDAGRSQDGIGGGH 477

Query: 118 GLKDNLKELLGIN-IS-K-----AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           G+ +  +  LG   ++ K      +++  +    +     +YAA D      L      +
Sbjct: 478 GMDELAQRHLGHTCLTFKEICGTGKKAIPFGEVPIDRA-TEYAAEDADVTSRLYTHLKPR 536

Query: 171 LQRLG 175
           L   G
Sbjct: 537 LAVEG 541


>gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107]
 gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107]
          Length = 998

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 57/179 (31%), Gaps = 30/179 (16%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------------- 68
            IA+DTET  L P +  L  V +  G+    +  I  G K    L               
Sbjct: 399 PIAIDTETTDLNPFKAELVGVGVCWGEANDALAYIPIGHKPPSELTEATPPQQLPLETVL 458

Query: 69  -----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
                 L   +  K     ++D  +L          V  T +A    R    +HGL    
Sbjct: 459 MALSPWLASPQHPKALQNAKYDRLILLRHGLTLNGVVIDTLLA-DYLRDAAAKHGLDVMS 517

Query: 124 KELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +   G         + K Q  +D   +  S     Y   DV     L LQ  + LQ +G
Sbjct: 518 EREFGFRPTTYGDLVGKKQTFADVEIEPAS----LYCGMDVHVTRRLALQLRQTLQAMG 572


>gi|298705697|emb|CBJ28935.1| similar to Werner syndrome protein [Ectocarpus siliculosus]
 gi|299115153|emb|CBN75519.1| similar to Werner syndrome protein [Ectocarpus siliculosus]
          Length = 727

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 14/150 (9%)

Query: 11  IPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-- 65
           +   C  +  + + +D E   +L        +  VQLS  DGT    ++  G K   +  
Sbjct: 104 LTDGCQLQG-NVLGLDCEWEPSLAGTTPNP-VSTVQLSLPDGTAYCFQLQRGNKKTTSSN 161

Query: 66  ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L  +L +    K+      D   L   +G+ V      +  +R     T    L  
Sbjct: 162 FPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETPSRSLAG 221

Query: 122 NLKELLGINISKA--QQSSDWSADDLSDEQ 149
               LLG  + K    +SS WS+  LSD Q
Sbjct: 222 MASSLLGRQLPKDPVIRSSRWSS-PLSDNQ 250


>gi|109080718|ref|XP_001099755.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 1
           [Macaca mulatta]
          Length = 514

 Score = 58.5 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 25/144 (17%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGR--FDIAVLFYTF 93
           +LC +Q++  +  V +  I      A N  L  +L D++  K+ H  R   D   L + +
Sbjct: 115 KLCWLQVAT-NCRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSD--CLSHQY 171

Query: 94  GVRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS--- 137
           G+ +  VF T++A     S  T  Y       L+++L + L +       + K Q+    
Sbjct: 172 GILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVAPKYLSFLEKRQKLIQE 231

Query: 138 --SDWSADDLSDEQLQYAASDVVH 159
               W    +S   L+  A +  +
Sbjct: 232 NPEVWFIRPVSPSLLKILALEATY 255


>gi|145354761|ref|XP_001421645.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581883|gb|ABO99938.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 389

 Score = 58.1 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 7/131 (5%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           +VQL+   G V +   +   +  P L  +  D     + +    D+  + + FG + R  
Sbjct: 91  LVQLANERGCVLVHLASMRGETPPTLRALCEDAGSIFVGNGVWSDMRDVDWAFGTKSRGY 150

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKEL-LGINISKAQQSSDWSADDLSDEQLQYAASDV-- 157
               + ++      ++HGLK             K+ Q+S+W    L  +Q+ Y A D   
Sbjct: 151 VDVGVIAQ--TFGHSRHGLKAMSARYGYDAEKPKSVQTSNWEKSPLEAKQIDYGAKDAAL 208

Query: 158 --VHLHALRLQ 166
               L  L  +
Sbjct: 209 GLWVLKQLYAE 219


>gi|302812014|ref|XP_002987695.1| hypothetical protein SELMODRAFT_126531 [Selaginella moellendorffii]
 gi|300144587|gb|EFJ11270.1| hypothetical protein SELMODRAFT_126531 [Selaginella moellendorffii]
          Length = 184

 Score = 58.1 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 13  AECAARYVDAI-AVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
                R   ++  VD E      +G     +++ ++Q+  G+    I+++    +    L
Sbjct: 19  ESWVLRQDGSVFGVDLEWKPNRVMGEE---NKVALIQIC-GETECLIVQMCYIDQIPDAL 74

Query: 67  VGMLVDEKREKIFHYG---RFDIAVLFYTFGVRVRPVFCTKIAS--RLTRTYTNQHGLKD 121
           V  L +    K    G   + D   L    G+  +      + +  +L        GLK 
Sbjct: 75  VEFLKNSSS-KAMFGGVGVKNDAEKLERDHGLVCKGTVELGVLATEKLGNQQLRNQGLKK 133

Query: 122 NLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
               ++G+ + K      S+W    LSD Q+ YA  D    +A+  + 
Sbjct: 134 MASIVIGLGMDKPKRVTMSNWENLHLSDAQVNYACVDAWVSYAILQKL 181


>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
 gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
          Length = 938

 Score = 58.1 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  V  +  +G    I +A    +AP           L
Sbjct: 355 LQQAELFAFDTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQL 414

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 415 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 473

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  + +  +++  +   
Sbjct: 474 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQ 533

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 534 VYREIEMPLVPVLSRIERTG 553


>gi|119902351|ref|XP_874985.2| PREDICTED: hypothetical protein [Bos taurus]
 gi|297479522|ref|XP_002690868.1| PREDICTED: hypothetical protein [Bos taurus]
 gi|296483301|gb|DAA25416.1| hypothetical protein BOS_10707 [Bos taurus]
          Length = 662

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 25/144 (17%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 264 KLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILKVIHDCRWLSD--CLSHQYG 321

Query: 95  VRVRPVFCTKIASRL-----TRTYTNQH--GLKDNLKELLGINISKAQQSSD-------- 139
           + +  VF T++A  L     T  +       L+++L   L I   K     +        
Sbjct: 322 ILLNNVFDTQVADVLQFSVETGGFLPNCISTLQESLIRHLKIA-PKHLSFLEVRQKWIRE 380

Query: 140 ----WSADDLSDEQLQYAASDVVH 159
               W    LS   L+  A +  +
Sbjct: 381 NPELWFTRPLSPSLLKILALEATY 404


>gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116]
 gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116]
          Length = 907

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 15/193 (7%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVGM 69
            +    I++DTET  L     +L  + +S  +     I I A                 +
Sbjct: 336 LKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKVYIEKHYIIQKFNNL 395

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
              + +  I    +FD  +L       + P F T IA+ L  T + +  L    ++ L  
Sbjct: 396 FKSKPKI-IGQNYKFDYKILKNNGFDPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYLMH 453

Query: 130 NISKAQ---QSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
              K +   Q +D +   +S E    Y++ D      L   F EKL+  G   L      
Sbjct: 454 KNIKYEDVIQKND-NFAHISLEMATSYSSEDADITFRLFNVFNEKLKEDGLDKLMYEIEM 512

Query: 185 NFLMDRAELDLLG 197
            F     E++  G
Sbjct: 513 PFNRVIIEMEENG 525


>gi|168037523|ref|XP_001771253.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677494|gb|EDQ63964.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 188

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF-------DIAVLF 90
           ++ ++Q+  G+    I+++         LV  L D          +F       D   L 
Sbjct: 54  KIALLQIC-GEDDCLIVQMLYLDSIPTELVNFLKDPSI-------KFPGVGIKGDALKLK 105

Query: 91  YTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLS 146
             +G+         T  AS L R      GLK   K ++  ++   K    S+W+   L 
Sbjct: 106 RDWGLECNGAIDLTTLAASVLGRPELKAAGLKSLAKVVMDYDMAKPKRVTMSNWAKPILD 165

Query: 147 DEQLQYAASDVVHLHALRLQF 167
             Q++YA+ D    +A+  + 
Sbjct: 166 KVQVEYASLDAWVSYAIHQKL 186


>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 938

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  V  +  +G    I +A    +AP           L
Sbjct: 355 LQQAELFAFDTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRDWVIAQL 414

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 415 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 473

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  + +  +++  +   
Sbjct: 474 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQ 533

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 534 VYREIEMPLVPVLSRIERTG 553


>gi|320165962|gb|EFW42861.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1379

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 27/191 (14%)

Query: 28  ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA 87
           E  G       + ++Q+S  +  +   R   G      L+ +L D    K+      D+ 
Sbjct: 794 EFNG-------VAVMQISTEEACLLYQRNGPGA-LPSQLLRLLTDTSVLKVGVGVADDLK 845

Query: 88  VLFYTFGVRVRPVFCTKI--A------SRLT-RTYTNQHGLKDNLKELLGINISKAQQ-- 136
            +   FG   +    T+   A      SRL  +    Q GLK       G+ ++K+++  
Sbjct: 846 RVQRAFG-LPKQ---TQFEPAVELGTWSRLVFKDLPTQPGLKSLAA-YCGVALNKSKRIT 900

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR--SDLATSCCNFLMDRAELD 194
            S W+   LS  QL YA  D      +  +    L R  +  ++L  +  N  +   +LD
Sbjct: 901 MSAWNRIPLSTNQLIYAVQDAWISFFIFARLFV-LSRNNKAVTELKRTMYNGRLMGFDLD 959

Query: 195 LLGWENVDIFS 205
              ++N   FS
Sbjct: 960 SNLFKNARAFS 970



 Score = 55.0 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 21/150 (14%)

Query: 23  IAVDTETLGLMP-RRDR----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           I +D E     P  + +    + ++QL+  +    +      +     L  +L +    K
Sbjct: 335 IGLDLE---WHPEFQAKQFNGVSLIQLAT-ETKCLLYHQPRVESLPSELAKLLANRAVLK 390

Query: 78  IFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRTYTN---QHGLKDNLKELLGIN 130
           +      D+A L         V +  +F   + +     +++     GL+       G+ 
Sbjct: 391 VGIGISNDLARLRRACINSGHVHLESIFD--LGALSLLVFSDLRGAPGLRSLATR-CGLA 447

Query: 131 ISKAQQ--SSDWSADDLSDEQLQYAASDVV 158
           I+KA+Q   S W    L+  QL YA  D  
Sbjct: 448 INKAKQVSMSAWDRIPLNHTQLVYAVQDAW 477


>gi|302802887|ref|XP_002983197.1| hypothetical protein SELMODRAFT_118004 [Selaginella moellendorffii]
 gi|300148882|gb|EFJ15539.1| hypothetical protein SELMODRAFT_118004 [Selaginella moellendorffii]
          Length = 184

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 13  AECAARYVDAI-AVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
                R   ++  VD E      +G     +++ ++Q+  G+    I+++    +    L
Sbjct: 19  ESWVLRQEGSVFGVDLEWKPNRVMGEE---NKVALIQIC-GETECLIVQMCYIDQIPDAL 74

Query: 67  VGMLVDEKREKIFHYG---RFDIAVLFYTFGVRVRPVFCTKIAS--RLTRTYTNQHGLKD 121
           V  L +    K    G   + D   L    G+  +      + +  +L        GLK 
Sbjct: 75  VEFLKNSSS-KAMFGGVGVKNDAEKLERDHGLVCKGTVELGVLATEKLGNQRLRNQGLKK 133

Query: 122 NLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
               ++G+ + K      S+W    LSD Q+ YA  D    +A+  + 
Sbjct: 134 MASIVIGLGMDKPKRVTMSNWENLHLSDAQVNYACVDAWVSYAILQKL 181


>gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
 gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
          Length = 971

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 32/212 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------ 64
           AR    +A DTET  L   +  L  V ++   G    + +     +A             
Sbjct: 373 ARDRGVMAFDTETSELSAYKGHLVGVSMAITPGEAAYVPLGHVAADADLLTDPDSAEALG 432

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT-- 112
                      L  +L D+   KI    ++D+ V+    G+ + P+  T + S       
Sbjct: 433 GQIPMDEALVALKDVLEDKSILKIGQNVKYDLLVMLQH-GIAMTPIDDTMLISYALDASS 491

Query: 113 YTNQHGLKDNLKELLGIN-IS-KAQQSSDWSADDLSDEQL----QYAASDVVHLHALRLQ 166
               HG+ +  +  LG   IS K    S  SA  ++  ++    +YA+ D      +   
Sbjct: 492 GLAGHGMDELSERFLGHKPISYKELCGSGRSAKPIAAVEIDRVTEYASEDADVTLRIWQV 551

Query: 167 FTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              +L   G + +            A ++  G
Sbjct: 552 LKPRLAAEGLAHVYERLERPLAPVLARMEQRG 583


>gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
 gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
          Length = 928

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 23/175 (13%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------AAGQKNAPNLVG 68
                  +A DTET  L PR  +L  +     +  V  + +               +L  
Sbjct: 354 LLACSGIVAWDTETTSLDPRDAQLVGIGCCWSERDVAYLPLGHRQGSNLDWDLVKQSLQP 413

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +  D  R K     ++D+++      +R++ + F   +AS +       H L D     L
Sbjct: 414 IWEDPNRPKSLQNCKYDLSIF-RAHSIRLQGIQFDPMLASYVLNPEA-SHNLADLAASYL 471

Query: 128 GIN-------ISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL 174
            +        + KA+  +D     L   ++ +Y  +D    + L    TEKLQ+ 
Sbjct: 472 NLPTTSYEKLLGKAESLAD-----LPIAKVAEYCGTDAYCAYRLVPILTEKLQQT 521


>gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 931

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 70/194 (36%), Gaps = 31/194 (15%)

Query: 3   TIRVHEGDIPAECAARYVDAIA------VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI 56
           T  + E D   +  A     IA       DTET GL P    L  +  +  +G    + +
Sbjct: 338 TYHLVEKD---DEIANLAKTIASQQSCCFDTETTGLDPNVSELVGMSFAFREGEAYYVPV 394

Query: 57  AAGQKNA----PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTR 111
            A  + A            + + EKI    ++DI VL    G+ VR  +F T IA  L  
Sbjct: 395 PADFEKAKAIVEQFRPFFENGETEKIGQNIKYDIIVLKKY-GIHVRGRLFDTMIAHYLIN 453

Query: 112 TYTNQHGLKDNLKELLG---INIS-------KAQQSSDWSADDLSDEQL-QYAASDVVHL 160
               +H +    +  L    I+I        K Q     +   L  +Q+  YA  D    
Sbjct: 454 PEL-RHNMDYMAETYLKYKTIHIDELIGSRGKNQL----NMRSLRPDQIKDYACEDADIT 508

Query: 161 HALRLQFTEKLQRL 174
             L+    + +++ 
Sbjct: 509 LKLKAILEKAIEKQ 522


>gi|255632121|gb|ACU16413.1| unknown [Glycine max]
          Length = 208

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           A     + +DTE       + ++ I+QL   +    II++        +L   L+D   E
Sbjct: 52  AGKQRIVGLDTEWTTAKKPKMKVAILQLCI-ENKCLIIQLFHMDNIPQSLRSFLMDSNFE 110

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG-LKDNLKELLGINISKAQ 135
            +      D+ +L   +G+         + ++    +    G LK   KEL+G+ + K++
Sbjct: 111 FVGVGVINDLRMLKNDYGLECNKGIDVSLLAKEKWPHRISSGALKYLAKELVGLEMEKSK 170

Query: 136 Q--SSDWSADDLSDEQLQYAASD 156
              +S+W + +L+  Q++YA  D
Sbjct: 171 AVCTSEWQSKELTQTQIEYACID 193


>gi|255953481|ref|XP_002567493.1| Pc21g04470 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589204|emb|CAP95344.1| Pc21g04470 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1240

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 21/172 (12%)

Query: 19   YVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVD----IIRIAAGQKNA--PNLVG 68
                I  D E       L   +  + ++Q++  +        + + A   ++   P+L  
Sbjct: 1034 GSKVIGFDMEWKAQASSLDSIQSNVSVIQIANEERIALFQIALFKPARSLEDLVSPSLKR 1093

Query: 69   MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--------QHGLK 120
            ++      K+    + D   L    G+  +  F      +L +   +           L 
Sbjct: 1094 LVESPDVTKVGVSIKADCTRLRKYLGIDAKATFELSHLYKLVKYGKDNPNLVNKRGVNLS 1153

Query: 121  DNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            + + E  G+ + K+   +  DW    LS  Q+QYAA+D      L      K
Sbjct: 1154 EQINEHFGLPLEKSDDVRCGDW-TRALSYRQVQYAATDPYACVRLFHAMEAK 1204


>gi|170033361|ref|XP_001844546.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167874284|gb|EDS37667.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 342

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 15/138 (10%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVR 98
           ++ ++  D  + I  I        +L  +L + +  ++ H GR   D  VL + FG  + 
Sbjct: 157 LLSIATPD-RIFIFDI-MWMSVTKDLKAILANPRIRRVIHNGRLAED--VLKHRFGAPLG 212

Query: 99  PVFCT---KIASRLTRTYTNQHGLKDNLKELLGIN---ISKAQQSSDWSADDLSDEQLQY 152
             F T    IA+     Y ++  ++  L + L +           +D     L++ Q + 
Sbjct: 213 RCFDTLVAHIATTKNYDYQSEISVEKCLAKYLNLPGNFFDPNITFAD---RPLTEPQRKA 269

Query: 153 AASDVVHLHALRLQFTEK 170
           AA +V  L  L+  F  +
Sbjct: 270 AAKNVAFLLTLQDYFVHE 287


>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
 gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
          Length = 930

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 18/166 (10%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75
           DTET  L     ++  +  +   G    + +A    +AP           L  +L D   
Sbjct: 356 DTETTSLNYMEAKMVGLSFAIEPGKAAYLPLAHDYADAPEQLDSEQVLAKLKPLLEDPSL 415

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K+    ++D+++L    G+ ++ V F T + S +  +  ++H + D   + LG      
Sbjct: 416 LKVGQNLKYDMSILAN-VGIALKGVAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISF 474

Query: 135 QQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
           ++ +      L+  Q+       YAA D      L      +LQ+ 
Sbjct: 475 EEIAGKGVKQLTFNQIPLETAAPYAAEDADITLRLHQHLWPRLQKA 520


>gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
 gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
          Length = 887

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +     +AP           L
Sbjct: 304 LKQAEVFAFDTETDSLDYMVANLVGLSFAVAEGEAAYVPVGHDYLDAPQQLDRDWVLAQL 363

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L + +  K+    ++D +V+    G+ +R +   T +AS +  +   +  +      
Sbjct: 364 KPLLENPQLAKVGQNLKYDASVVARY-GITMRGIAHDTMLASYVYNSVGGKQDMDSLALR 422

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            L  +    +Q +    + L+  Q+       YAA D      L  +    L+ 
Sbjct: 423 FLQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLQALLEA 476


>gi|313216815|emb|CBY38052.1| unnamed protein product [Oikopleura dioica]
          Length = 680

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 42/130 (32%)

Query: 65  NLVGMLVDEKREK------------------IFHYGR---FDIAVLFYTFGVRVRPVFCT 103
            L+  L DE   K                  IFH      FD+                 
Sbjct: 78  ELMAFLRDEDVVKLGCGIDGDFKRLSEVDFVIFHPATISFFDLR---------------- 121

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLH 161
           +I   +  T     GL +  +++LG  ++K  +   S+W AD LS+EQ  YAA D V   
Sbjct: 122 QI---IPATNYQNGGLANLTRQILGRKLNKDYRVRCSNWEADTLSNEQKTYAADDAVCAL 178

Query: 162 ALRLQFTEKL 171
            +  +  ++L
Sbjct: 179 QILGKLIQEL 188


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
          Length = 985

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 31/192 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA---------- 63
           A     +A DTET  + P +  L    +  L+PG      ++  +G  +           
Sbjct: 392 AVETGLLAFDTETTSVDPMQAELVGFSL-ALAPGRAAYIPLQHKSGAGDLLGGGTVEGQI 450

Query: 64  ------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                   L  +L D    KI    ++D  ++    G+       T + S +    T  H
Sbjct: 451 PLGEALAALKTVLEDASVLKIAQNMKYDWLIMRRY-GINTVSFDDTMLISYVLDAGTGSH 509

Query: 118 GLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTE 169
           G+    +  LG      K    S      ++ + +       YAA D      L      
Sbjct: 510 GMDPLSERWLGHTPIAYKDVAGS--GKSSVTFDMVDIDRATAYAAEDADVTLRLWQVLKP 567

Query: 170 KLQRLGRSDLAT 181
           +L   G   +  
Sbjct: 568 RLAAEGLMSVYE 579


>gi|317034362|ref|XP_001396222.2| hypothetical protein ANI_1_558114 [Aspergillus niger CBS 513.88]
          Length = 309

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 26/177 (14%)

Query: 36  RDRLCIVQLSPGDGTVD----IIRIAAGQKNA--PNLVGMLVDEKREKIFHYGRFDIAVL 89
           +D + ++Q++  +        + R      +   P+L  ++      K+    + D   L
Sbjct: 120 QDNVSLIQIANRERIALFHVALFRPGRKISDLVPPSLKQIIESPDITKLGVSIKADCTRL 179

Query: 90  FYTFGVRVRPVFCTKIASRLTRT--------YTNQHGLKDNLKELLGINISKAQ--QSSD 139
                V    +F      +L +               L + ++E LG+ + KA+  + SD
Sbjct: 180 RKYLKVDAHGIFELSHLHKLVKYCQTNPKLINKRPVNLSEQVEEHLGLPLEKAEDVRCSD 239

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFLMDRAELDL 195
           W+   LS  Q+QYAASD      L      K + L  R          L   A+LDL
Sbjct: 240 WTV-SLSYRQVQYAASDSYACICLFDTMDAKRKALDPRPP--------LPAHADLDL 287


>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
 gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
          Length = 928

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D  A D ET  L      +  +  +   G    + +A    +AP+          L
Sbjct: 345 LKKSDVFAFDLETDSLDTLSANIVGLAFAVAPGEAAYLPVAHDYLDAPDQLDRAAVLAQL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D K  K+    ++D  VL     + +  + + T + S    +   +H +      
Sbjct: 405 KPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIKYDTMLESYCLNSVGGKHDMDSLAAR 463

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            L       ++ +    + L+  Q+       YAA D      L L+   +L++ 
Sbjct: 464 WLNHKTVTFEEIAGKGKNQLTFNQIAIEQAGHYAAEDADVTLQLHLKMWPELEKE 518


>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
 gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
          Length = 915

 Score = 58.1 bits (140), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
              V+  A DTET  L      L  +  +  +G    + +A     AP           L
Sbjct: 334 LEEVELFAFDTETTSLNYIEAELVGMSFALDNGEAAYLPVAHSYMGAPEQLERDEVLKQL 393

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L  EK +K+    ++D++VL     + +  + F T + S    +  ++H +      
Sbjct: 394 KPLLESEKHKKVGQNLKYDMSVLANY-DIELAGIEFDTMLESYCLNSVASRHDMDTLALH 452

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            L     K ++ +    + L+ +Q++      YA+ D      L  +   +L++
Sbjct: 453 HLNHVNIKFEEIAGKGKNQLTFDQIEVEQAAPYASEDADITMRLHQKLWPELKQ 506


>gi|242044098|ref|XP_002459920.1| hypothetical protein SORBIDRAFT_02g015821 [Sorghum bicolor]
 gi|241923297|gb|EER96441.1| hypothetical protein SORBIDRAFT_02g015821 [Sorghum bicolor]
          Length = 455

 Score = 58.1 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 13/156 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE       R ++ ++Q+  G     + ++        +L   L DE    +    
Sbjct: 277 VGLDTE--WFESDRKKIALIQICVGK-KCLLFKVGRAGTIPDDLKSFLADENHVFVGVAI 333

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELLGINIS-KA-- 134
             D+  L+    + +      ++ + +      +H      L    + LLG+ +  K   
Sbjct: 334 ANDLDRLWEGHQIELSNK--VELQAMVPFIIPGKHWDNVPSLATLAQVLLGVCVEGKGTT 391

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            +  DW  + L+D Q+QYA +DVV  + +      +
Sbjct: 392 LRYKDWDNELLTDSQIQYACTDVVVPYMIGDMLQNE 427


>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
 gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
          Length = 938

 Score = 58.1 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  V  +  +G    I +A    +AP           L
Sbjct: 355 LQQAELFAFDTETDSLDYMVANLVGVSCAVAEGEAAYIPVAHDYLDAPQQLDREWVIAQL 414

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 415 KPLLEDESKAKVGQNLKYDASVIARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 473

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  + +  +++  + + 
Sbjct: 474 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLEQ 533

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 534 VYREIEMPLVPVLSRIERTG 553


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score = 58.1 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 20/179 (11%)

Query: 19  YVDAIAVDTETLGLMPRRDRL-CI-VQLSPGDGTVDIIR--IAAGQKNAPNLVGMLVDEK 74
             ++I+ DTET G       L  +   + PG+G    +   + A Q+       +L +E 
Sbjct: 364 KQESISFDTETTGTDANLAELVGLSFSIKPGEGYYIPVPAEMEAAQQIVEEFRPVLENEN 423

Query: 75  REKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG----- 128
             KI    ++D+ +L   +G+ V+  +F T +A  L    T +H +    +  L      
Sbjct: 424 IVKIGQNIKYDMLIL-KWYGISVKGRLFDTMLAHYLIDPDT-RHNMDVLSENYLNYSPIS 481

Query: 129 ----INISKAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
               I      Q +     D+  ++ + YAA D      L   F   L++L    LAT 
Sbjct: 482 ITTLIGPKGKSQGT---MRDVPVEKVVDYAAEDADITLQLANVFEPLLKQLNAEKLATE 537


>gi|323456411|gb|EGB12278.1| hypothetical protein AURANDRAFT_61313 [Aureococcus anophagefferens]
          Length = 701

 Score = 58.1 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWS--ADDLSDEQLQYAASDVVHLHALRLQF 167
            R Y     L      LLG+ + K  Q S W   A  L D  + YAA D      L    
Sbjct: 438 LRDYAGSSSLSGLAGALLGVRLDKRLQCSAWGVGARPLPDAWVAYAALDAYVCVLLHDSL 497

Query: 168 TEK 170
            ++
Sbjct: 498 ADR 500


>gi|322502531|emb|CBZ37614.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 548

 Score = 58.1 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 10/149 (6%)

Query: 30  LGLMPRRDR---LCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85
           +G+     R   L +VQ +       + I    G+     +   L D    K       D
Sbjct: 15  MGMDSEWFRDLPLAVVQFATSSHCFVLHISFFDGRILPAAVKEALCDPSIIKCGVGVSGD 74

Query: 86  IAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSA 142
           ++ L     + ++ V    + ++        Q  LK   K +  ++I   K    S+W  
Sbjct: 75  VSRLQKEQNITIQSVLDVAQYSALFGLHQGAQSNLKVLAKSVANLSIEKDKMITRSNWEL 134

Query: 143 DDLSDEQLQYAASDVV--HLHALRLQFTE 169
             LSD ++ YAA D +  +L    +    
Sbjct: 135 -PLSDSRVNYAAEDALASYLVGRAVMLKA 162


>gi|159482675|ref|XP_001699393.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272844|gb|EDO98639.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 785

 Score = 58.1 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 32/144 (22%)

Query: 55  RIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK---IASRLT 110
           +   G   AP +L G+L DE   K+ +  R D A L+  +GVR+R V   +   +A+R  
Sbjct: 48  QPGPGLAGAPFSLRGLLEDEHVPKLLYDVRSDAAALWSEYGVRLRGVTDLQLADVAARQA 107

Query: 111 RTYTNQHGLKDNLKELLGINISKA----------------------QQSSD------WSA 142
                +    + L   L   ++                        ++  D      W+ 
Sbjct: 108 EEGARRAAWVEGLVRCLSRRLAADGRGGAGVPPRLADDLAAATAIAKRYHDGGNTQVWTQ 167

Query: 143 DDLSDEQLQYAASDVVHLHALRLQ 166
             L+ E  +YAA+DV +LHAL   
Sbjct: 168 RPLTPELSEYAATDVRYLHALEEA 191


>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
 gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
          Length = 978

 Score = 58.1 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 61/198 (30%), Gaps = 53/198 (26%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------- 65
           A  +  +AVDTET  L      L  V L+ G G    I +A  +  + +           
Sbjct: 381 AHDLGHVAVDTETTSLDAMACDLVGVSLATGPGRACYIPLAHLKDGSSDDGDMFSEGLDP 440

Query: 66  -----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
                      L  ML      KI    ++D  VL    G+ V P   T + S +     
Sbjct: 441 DQMDLKEALALLKPMLEAPSVLKIAQNLKYDWLVLSRY-GIEVGPFDDTMLLSYVLDAGR 499

Query: 115 NQHGLKDN-----------LKELLG-----INISK--AQQSSDWSADDLSDEQLQYAASD 156
            +HG+               KE+ G     +   K   +++S             YAA D
Sbjct: 500 GKHGMDALSLAHLDHTPIPFKEVAGSGKSMVTFDKVSIEKAS------------AYAAED 547

Query: 157 VVHLHALRLQFTEKLQRL 174
                 L      +L   
Sbjct: 548 ADVTLRLWTLLKARLVAE 565


>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
 gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
          Length = 892

 Score = 58.1 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 76/210 (36%), Gaps = 28/210 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIV--QLSPGDGTVDIIRIAAGQKNAPN--------- 65
                A A+D ET  L PR  R  +V   +S        I +      AP          
Sbjct: 310 LEAAPAFAIDLETTSLNPREAR--VVGYAVSCRPHEARYIPVGHRYLGAPEQLPEALVLE 367

Query: 66  -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNL 123
            L  +L D  R KI    ++D  VL    G  +  ++  T +A+ L     N  GL    
Sbjct: 368 ILGPLLKDPARRKIGQNLKYDYQVL-RMAGFEMEGIWCDTMLAAYLVNPARNSQGLDALA 426

Query: 124 KELLGINISKAQQSSDWSADDL--SDEQLQYAA------SDVVHLHALRLQFTEKLQRLG 175
            E L   +    + +     +L  S+  L  A       +D  +L  L      K++  G
Sbjct: 427 LEYLDHRMISYAEVAGSGKCELNFSEVDLDRAGPYSCEDADATYL--LHEILLPKVREQG 484

Query: 176 RSDLATS-CCNFLMDRAELDLLGWE-NVDI 203
             +L        +   A+++L G + +VD+
Sbjct: 485 MEELLFDLEMPLMRILADMELHGVKLDVDL 514


>gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688]
 gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688]
          Length = 918

 Score = 58.1 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 19/175 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVD 72
           +  DTET  L P   +L  +  S   G    + +      AP+          +  +L +
Sbjct: 343 VCFDTETTSLDPLTAKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAATLARIKPLLEN 402

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
              +K+    ++D  VL    G+ +  +   T + S +  ++   HG+ D     LG+  
Sbjct: 403 PAIKKVGQNLKYDKHVLANH-GIVLNGIAHDTLLQSYVLESHRT-HGMDDLAMRHLGVQT 460

Query: 132 SKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
              +Q +   A  +S  Q+      +YAA D      L      ++    + +  
Sbjct: 461 ITYEQVAGKGAKQVSFSQVALEQASEYAAEDADVTLQLHENLYPQVAEDAKLEFV 515


>gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057]
 gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056]
 gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059]
 gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057]
          Length = 923

 Score = 57.7 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 18/173 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D  A+DTET  L  R   +    ++        + +A   +NAP           + 
Sbjct: 346 QNADHFAIDTETTSLDYRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQVLAQIK 405

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L +E  +KI H+ ++D A +    G+ ++   F + +AS +      +HG+ D  +  
Sbjct: 406 PVLENEAVKKIGHHLKYD-AHISANHGIELKGWYFDSMLASYVLNAAATRHGMDDVARVY 464

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
           L    +  +Q +   A   +  Q++      YAA D    + L    + KL+ 
Sbjct: 465 LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKA 517


>gi|125571460|gb|EAZ12975.1| hypothetical protein OsJ_02895 [Oryza sativa Japonica Group]
          Length = 357

 Score = 57.7 bits (139), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 12/155 (7%)

Query: 23  IAVDTETLGLMPR-RDRLC----IVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKRE 76
           + +DTE          + C    ++QL  G     + +I       P  L   L D    
Sbjct: 194 VGIDTE-WRTDHLPNGKTCYKVAVLQLCVG-RRCLLFQIYQAGNMVPHELAEFLADPSVR 251

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKA 134
            +      D+  L     +RV      + A+          + GLK     ++G ++ K 
Sbjct: 252 FVGVAVNNDMQRLANDCNLRVACAVDLRYAAAAVLGQPELARAGLKRLALTVMGAHMEKE 311

Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           +    S W    L+ EQ+ YA  D    + +  + 
Sbjct: 312 KNITKSRWGEPTLTWEQVNYACIDAYVSYEIGRRL 346


>gi|55773858|dbj|BAD72396.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|55773956|dbj|BAD72483.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 298

 Score = 57.7 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 12/155 (7%)

Query: 23  IAVDTETLGLMPR-RDRLC----IVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKRE 76
           + +DTE          + C    ++QL  G     + +I       P  L   L D    
Sbjct: 135 VGIDTE-WRTDHLPNGKTCYKVAVLQLCVG-RRCLLFQIYQAGNMVPHELAEFLADPSVR 192

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN--QHGLKDNLKELLGINISKA 134
            +      D+  L     +RV      + A+          + GLK     ++G ++ K 
Sbjct: 193 FVGVAVNNDMQRLANDCNLRVACAVDLRYAAAAVLGQPELARAGLKRLALTVMGAHMEKE 252

Query: 135 Q--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           +    S W    L+ EQ+ YA  D    + +  + 
Sbjct: 253 KNITKSRWGEPTLTWEQVNYACIDAYVSYEIGRRL 287


>gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
 gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
          Length = 922

 Score = 57.7 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 20/176 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               +  A+DTET  +      L  +  +   G    + +A   + AP           L
Sbjct: 340 LSQAELFAIDTETTSIDYMAAELVGLSFAVEAGKGAYLPVAHDYEGAPVQLDRDTVLAKL 399

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D    K+    ++D++VL    G+ +  + F T + S    +   +H + D   +
Sbjct: 400 KPLLEDTAPRKVGQNLKYDMSVLAKY-GIALNGIAFDTMLESYCFNSTAGRHNMDDMALK 458

Query: 126 LLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            LG           K  +   ++   L +    YAA D      L      +LQ L
Sbjct: 459 YLGHKTIHFEDIAGKGAKQKTFNQIPLEEA-APYAAEDADITLRLHQHLWPRLQEL 513


>gi|114656432|ref|XP_523055.2| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 2
           [Pan troglodytes]
          Length = 572

 Score = 57.7 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 173 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 230

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137
           + +  VF T++A     S  T  Y       L+++L + L +       + K Q+     
Sbjct: 231 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 290

Query: 138 -SDWSADDLSDEQLQYAASDVVH 159
              W    +S   L+  A +  +
Sbjct: 291 PEVWFIRPVSPSLLKILALEATY 313


>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
 gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
          Length = 892

 Score = 57.7 bits (139), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 74/214 (34%), Gaps = 36/214 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL------CIVQLSPGDGTVDIIRIAAGQKNAPN----- 65
                A A+D ET  L PR  R+      C             I +      AP      
Sbjct: 310 LEAAPAFAIDLETTSLNPREARVVGYAASC------RPHEAWYIPVGHRYLGAPEQLPES 363

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119
                L  +L D  R KI    ++D  VL    G  +  ++  T +A+ L     N  GL
Sbjct: 364 LVLEILGPLLKDPARRKIGQNLKYDYQVL-RIAGFELEGIWCDTMLAAYLVNPARNSQGL 422

Query: 120 KDNLKELLGINISKAQQSSDWSADDL--SDEQLQYAA------SDVVHLHALRLQFTEKL 171
                E L   +    + +     +L  S+  L  A       +D  +L  L      K+
Sbjct: 423 DALALEYLDHRMISYAEVARSGKCELNFSEVDLDRAGPYSCEDADATYL--LHEILLPKV 480

Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLGWE-NVDI 203
           +  G  +L        +   A+++L G + +VD+
Sbjct: 481 REQGMEELLFDLEMPLMRILADMELHGVKLDVDL 514


>gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P]
 gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P]
          Length = 980

 Score = 57.7 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 55/168 (32%), Gaps = 25/168 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----APNLVGMLVDEKREK 77
           A+  DTET GL      L  +  S   G    +     Q        +       E  EK
Sbjct: 409 AVCFDTETTGLKALEVELIGIAFSYETGKGYYVSFPEDQAETQRILEDFRPFFESE-IEK 467

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130
           I H  ++DI VL          +F T IA  L      +H +    +  L          
Sbjct: 468 IGHNLKYDIKVLSTYKMPVKGKLFDTMIAHYLINP-DMRHNMDVLAETYLNYQPISIAEL 526

Query: 131 ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQ 172
           I K         + LS       EQ +YA  D      L+  FT +L+
Sbjct: 527 IGKK------GKNQLSMRSVPLKEQTEYAVEDADITFQLKQLFTGELE 568


>gi|221044296|dbj|BAH13825.1| unnamed protein product [Homo sapiens]
          Length = 572

 Score = 57.7 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 173 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 230

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137
           + +  VF T++A     S  T  Y       L+++L + L +       + K Q+     
Sbjct: 231 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 290

Query: 138 -SDWSADDLSDEQLQYAASDVVH 159
              W    +S   L+  A +  +
Sbjct: 291 PEVWFIRPVSPSLLKILALEATY 313


>gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
          Length = 948

 Score = 57.7 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 29/173 (16%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----------APNLVGMLVD 72
           +AVDTET  L   + +L  + ++   G    I +A    +             L   L D
Sbjct: 375 VAVDTETTSLDEMQAKLVGLSMAVAPGVACYIPVAHRGPDGATQLPKDEVLARLRPWLED 434

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             R K+ H+ ++D  V     G+R+  +   T + + +  ++    GL D  +  LG + 
Sbjct: 435 ASRAKLLHHAKYDTHVFANE-GIRLAGIAEDTMLQAYVLESH-RGVGLNDLAQRYLGRS- 491

Query: 132 SKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR 173
                  D        +Q+            YAA D      L      ++  
Sbjct: 492 --GVSYEDLCGK--GAKQIGFDEVAVDKAGHYAAEDADFTLQLHQVLRPQVAA 540


>gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
          Length = 930

 Score = 57.7 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
               + IA DTET  L      L  V     +G    + +A    +AP           L
Sbjct: 347 LEKAELIAFDTETTSLNYMDAELVGVSFCIEEGEAAYVPVAHDYPDAPAQLSREFVLDAL 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L  +   K+  + ++D  VL     + +  + F T + S +  +   +H +      
Sbjct: 407 KPILESDTVIKVGQHIKYDKNVLANY-DITLNGIGFDTMLESYVLNSTAQRHDMDSLALA 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
            LG      ++ +   A  L+  Q+       YAA D      L      KL+ 
Sbjct: 466 YLGHKTIHFEEIAGKGAKQLTFNQISLEEAGPYAAEDADITLRLHNAIWTKLKE 519


>gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 921

 Score = 57.7 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 79/199 (39%), Gaps = 29/199 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM------LV 71
            ++VDTET    P    L  +  S  + T   + +    +  Q  + +L  +      ++
Sbjct: 345 VLSVDTETTSPNPAMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSLEEIREHLGPVL 404

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
             +  K+    ++D+ VL    G  +  + F T +AS + +    +H +    K+LL  +
Sbjct: 405 SSQVPKVGQNIKYDLIVLENH-GFILNNIQFDTMLASYVIQPEGRRHNMDVLAKDLLNYD 463

Query: 131 I----------SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
                       K ++ +D     +  EQ+ +YAA D      L   F +K++  G   +
Sbjct: 464 TITYDDLVGTGKKKKELTD-----IDPEQVAEYAAEDADITFRLYQIFRKKIKESGVEPI 518

Query: 180 ATS-CCNFLMDRAELDLLG 197
             +     +   A+++  G
Sbjct: 519 LRNIEMPLISVLAKMEKTG 537


>gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 921

 Score = 57.7 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 79/199 (39%), Gaps = 29/199 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----AAGQKNAPNLVGM------LV 71
            ++VDTET    P    L  +  S  + T   + +    +  Q  + +L  +      ++
Sbjct: 345 VLSVDTETTSPNPAMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSLEEIREHLGPVL 404

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
             +  K+    ++D+ VL    G  +  + F T +AS + +    +H +    K+LL  +
Sbjct: 405 SSQVPKVGQNIKYDLIVLENH-GFILNNIQFDTMLASYVIQPEGRRHNMDVLAKDLLNYD 463

Query: 131 I----------SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
                       K ++ +D     +  EQ+ +YAA D      L   F +K++  G   +
Sbjct: 464 TITYDDLVGTGKKKKELTD-----IDPEQVAEYAAEDADITFRLYQIFRKKIKESGVEPI 518

Query: 180 ATS-CCNFLMDRAELDLLG 197
             +     +   A+++  G
Sbjct: 519 LRNIEMPLISVLAKMEKTG 537


>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 916

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 18/167 (10%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A+DTET  L      +  + L+        I +A     AP           +  +L DE
Sbjct: 341 AIDTETTSLKYMEAEIVGISLAVAPNEACYIPLAHDYAGAPEQLDRDWVLQKMKPLLEDE 400

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
             +K+    ++D  VL     + +  +   T + S +  +  ++H + D  K  LG    
Sbjct: 401 TPKKVGQNLKYDAHVLKNY-DIELNGIAHDTMLESYVLNSTASKHNMDDLAKHYLGHECI 459

Query: 133 KAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
             +  +   A  L+  Q+      +YAA D      L      +L+ 
Sbjct: 460 DFESIAGKGAKQLTFNQIPVEQAGEYAAEDADITLRLHQVLWPQLEA 506


>gi|328850207|gb|EGF99375.1| hypothetical protein MELLADRAFT_112782 [Melampsora larici-populina
           98AG31]
          Length = 380

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 39/181 (21%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLC-----IVQLSPGDGTVDIIRI--AAGQKNAPN----- 65
           + + AIA D E         R C     ++QL+ G   V II++    GQK         
Sbjct: 145 KSMKAIAFDME---WCHDWSRKCARTTSLIQLA-GRSKVLIIQLVQLDGQKWKEATFPQC 200

Query: 66  LVGMLVDEKREKIFHYG--------RFDIAVLFYTFGVRVRPV---------FCTKIASR 108
           L  ++   +  K    G          DI +  +   V+++           F ++    
Sbjct: 201 LADLITSTEIIK-MGAGIISDERKIDQDIWIDSHDQIVKLKNYLEINDLIKKFDSQ---A 256

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
                     L+  +   L +++ K +    S+W    L+  Q  YAA+DVV +  +  +
Sbjct: 257 KEEIGNGTFSLQKLVDRYLNLHLPKTKKLTISNWETTQLTSSQAHYAAADVVTVIRIYER 316

Query: 167 F 167
            
Sbjct: 317 L 317


>gi|189460764|ref|ZP_03009549.1| hypothetical protein BACCOP_01411 [Bacteroides coprocola DSM 17136]
 gi|189432483|gb|EDV01468.1| hypothetical protein BACCOP_01411 [Bacteroides coprocola DSM 17136]
          Length = 146

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 4/141 (2%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++Q+S  D           +   P+ +   +     K+    + D A+L        R  
Sbjct: 3   LLQISTHDTCFL---FRLNRLGLPDFLEEFLQNDVLKVGLSLKDDFAMLRKRNTKDPRSG 59

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
              ++   +      +  L+     L G  ISK+Q+ S+W A+ L++ Q  YAA+D    
Sbjct: 60  NWVELQDYVPCFGIEEKSLQKIYALLFGKKISKSQRLSNWEAEVLTEAQQLYAATDAWAC 119

Query: 161 HALRLQFTEKLQRLGRSDLAT 181
             +     + L+  G  ++  
Sbjct: 120 VEIYNYLDD-LRSTGGYEIVK 139


>gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
          Length = 928

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A D ET GL      +  +  +   G    + +A    +AP           L
Sbjct: 345 LKNSEVFAFDLETDGLDTLTANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVLAQL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D    K+    ++D  VL     + +  + + T + S +  +   +H +      
Sbjct: 405 KPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKYDTMLESYILNSVVGKHDMDSLSAR 463

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            L       ++ +    + L+  Q+       YAA D      L L+   +L++ 
Sbjct: 464 WLNHKTITFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKE 518


>gi|218658301|ref|ZP_03514231.1| ribonuclease III protein [Rhizobium etli IE4771]
          Length = 51

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 7  HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI 53
             D+ A C      D I +DTE L        LC++Q++     V +
Sbjct: 4  TTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTLEVLV 51


>gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO]
 gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO]
          Length = 892

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 17/152 (11%)

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNL 123
           NL  +L ++  + I    ++D +VL    G+   RP F T IA+ L      +  L +  
Sbjct: 368 NLKSILENQSAKIIGQNLKYDYSVLKMH-GIEPVRPSFDTMIAAYLLNPDEKRFNLDELA 426

Query: 124 KELLGIN-ISKAQQSSDWSADDL----------SDEQLQYAASDVVHLHALRLQFTEKLQ 172
            + L    IS  +   D     L           ++  +Y+A D      L      KL 
Sbjct: 427 MKFLNYKMISFEELFKD--TSPLFGAVTFADVSVEDATKYSAEDADITRRLYEILNIKLH 484

Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG-WENVD 202
                ++        +     ++L G + N+D
Sbjct: 485 EADLLEVLEKIEMPLIPVLVHMELEGVYMNID 516


>gi|224129176|ref|XP_002328909.1| predicted protein [Populus trichocarpa]
 gi|222839339|gb|EEE77676.1| predicted protein [Populus trichocarpa]
          Length = 323

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 11/154 (7%)

Query: 23  IAVDTE-----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           I  D E     T G++P   +  ++Q+        ++ I       P+L  +L D K  K
Sbjct: 152 IGFDIEWKPSFTTGVLP--GKAAVMQICANTSLCHVMHIFHSGI-TPSLQFLLEDSKLVK 208

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISK--A 134
           +      D A +F  +   V+ V   + +A++         GL+   K L+   + K   
Sbjct: 209 VGIGIGGDCAKVFRDYNASVKSVEDLSYLANQKLDGKPKTWGLQALAKILVCKELQKPNK 268

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            +  +W  D LS EQLQYAA+D      L     
Sbjct: 269 IRLGNWQVDVLSKEQLQYAATDAFASWQLYQVLK 302


>gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 929

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 20/177 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  V  +   G    + +      AP           L
Sbjct: 345 LKKASVFAFDTETDSLDTLTANLVGVSFAISAGDAAYLPLGHDYLGAPEQLDREVVLAAL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNL 123
             +L D    KI    +FD  VL    G+ ++ + + T + S +        +H +    
Sbjct: 405 KPLLEDSNLLKIGQNIKFDRGVLARY-GIELQGIAYDTMLESYVLNSVAGMGRHDMDSLA 463

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
           +  L    +  ++ +    + L+  Q+       YAA D      L      +L++ 
Sbjct: 464 ERHLNHKTTTFEEIAGKGKNQLTFNQVAVEQAAMYAAEDADVTLLLHQAMWPQLEKA 520


>gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1]
 gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1]
          Length = 928

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 20/202 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      +  +  +   G    + +A     AP           L
Sbjct: 346 LKKAPLFAFDTETDSLDNHSANMVGLSFACEPGVAAYVPVAHDYIGAPEQISRERALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + + T + S    +   +H +    + 
Sbjct: 406 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAWDTMLESYTLDSVAGRHDMDSLSER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ-RLGRSD 178
            L       ++ +    + L+  Q+       YAA D      L L+   KLQ R G  +
Sbjct: 465 WLKHKTITFEEIAGKGKNQLTFNQIDLEQAGRYAAEDADVTLQLHLKMWPKLQKREGPLN 524

Query: 179 LATS-CCNFLMDRAELDLLGWE 199
           +  +     +   + ++  G +
Sbjct: 525 VFRNIEMPLVPVLSRIERNGVK 546


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A D ET GL      +  +  +   G    + +A    +AP           L
Sbjct: 345 LKNSEVFAFDLETDGLDTLTANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVLAQL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D    K+    ++D  VL     + +  + + T + S +  +   +H +      
Sbjct: 405 KPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKYDTMLESYILNSVVGKHDMDSLSAR 463

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            L       ++ +    + L+  Q+       YAA D      L L+   +L++ 
Sbjct: 464 WLNHKTITFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKE 518


>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
 gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
          Length = 920

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 21/191 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREKI 78
           +++DTET         L  +  +  +     + I A ++ A         +  ++K  KI
Sbjct: 350 LSLDTETTSTNAIDAELVGLSFAVEENKAFYVAIPAEREKALRIVNIFKPLYENKKILKI 409

Query: 79  FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRT--YTNQHGLKDNLKELLGINIS--- 132
               ++D  VL     + ++  +F T IA  L +   + N   L +       I+I    
Sbjct: 410 GQNIKYDYEVLLNY-DIEIKGKMFDTMIAHYLIQPELHHNMDYLAEVFLNYQTIHIEELI 468

Query: 133 ----KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186
               K Q+    +  DL+ + + +YAA D      L+     KL  +    L        
Sbjct: 469 GPKGKNQK----NMRDLNPKDVYEYAAEDADITLRLKNVLEPKLGEVKAEHLFWEIEMPL 524

Query: 187 LMDRAELDLLG 197
           +   A+++  G
Sbjct: 525 IPVLADMERNG 535


>gi|123983340|gb|ABM83411.1| exonuclease 3'-5' domain-like 1 [synthetic construct]
 gi|123998041|gb|ABM86622.1| exonuclease 3'-5' domain-like 1 [synthetic construct]
          Length = 475

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 76  KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 133

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137
           + +  VF T++A     S  T  Y       L+++L + L +       + K Q+     
Sbjct: 134 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 193

Query: 138 -SDWSADDLSDEQLQYAASDVVH 159
              W    +S   L+  A +  +
Sbjct: 194 PEVWFIRPVSPSLLKILALEATY 216


>gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 929

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 20/190 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL----VGMLVDEKREKI 78
           +  DTET  +      L  +           +     ++ A  L         +EK  K+
Sbjct: 359 VCFDTETTAIDALEAELVGISFCWTAHKGYYVPFPVDKEEATALLNTLRPFFENEKITKV 418

Query: 79  FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130
               ++D+ VL    G++V+  +F T IA  L      +H +    +  LG         
Sbjct: 419 GQNLKYDLKVLQNY-GIKVQGALFDTMIAHYLINP-DMRHNMDLLSETYLGYTPIAIESL 476

Query: 131 ISKA-QQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFL 187
           I K   Q S      ++ +E  +YA  D      L+  F  +L ++    +        L
Sbjct: 477 IGKGKAQRS---MRTVALEEVKEYAVEDADVTWQLKDVFKAELPKVNAQKVYADLEMPLL 533

Query: 188 MDRAELDLLG 197
              A ++  G
Sbjct: 534 KVLAVMEREG 543


>gi|328545870|ref|YP_004305979.1| DNA polymerase I [polymorphum gilvum SL003B-26A1]
 gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
          Length = 994

 Score = 57.3 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 60/223 (26%), Gaps = 59/223 (26%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------- 57
           A     +A DTET  L   +  L  V L+   G    + +A                   
Sbjct: 400 AVETGLVAFDTETTSLDAMQAELVGVSLATAPGKACYVPLAHVDGEGDLLGGGGLVEGQI 459

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
              +    L  ML D    KI    ++D  V+    GV + P   T + S +       +
Sbjct: 460 PLAEALDVLRPMLEDAGVLKIAQNLKYDWLVMARY-GVEIAPYDDTMLLSYVLDAGKGGN 518

Query: 118 GLKDNLKELLG---------------------INISKAQQSSDWSADDLSDEQLQYAASD 156
           G+ +  +  L                      + I KA                 YAA D
Sbjct: 519 GMDELAERWLDHTPIPFKEVAGSGKAMVTFDKVPIDKAT---------------AYAAED 563

Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCN--FLMDRAELDLLG 197
                 L      +L    R            +   A ++  G
Sbjct: 564 ADVTLRLWRVLKPRLVAE-RMATVYETLERPMVPVLARMERRG 605


>gi|114656434|ref|XP_001147941.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 1
           [Pan troglodytes]
          Length = 514

 Score = 56.9 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 115 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 172

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137
           + +  VF T++A     S  T  Y       L+++L + L +       + K Q+     
Sbjct: 173 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 232

Query: 138 -SDWSADDLSDEQLQYAASDVVH 159
              W    +S   L+  A +  +
Sbjct: 233 PEVWFIRPVSPSLLKILALEATY 255


>gi|255563614|ref|XP_002522809.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223538047|gb|EEF39660.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 149

 Score = 56.9 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 8/147 (5%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
           +QL  G     ++ I         L  +L D    K+      D   +F  + V V+ V 
Sbjct: 1   MQLCTGTDYCHVMHIIHSGIPKS-LQSLLEDSALLKVGVGVGNDSVKVFTDYNVSVKAVE 59

Query: 102 C-TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVV 158
             + +A +          L+   + L+   + K    +  +W  D LS EQL+YAA+D  
Sbjct: 60  DLSYLARKKIGGKPKSWSLQSLTEMLVCKELGKPNKIRLGNWEVDVLSKEQLEYAATDAF 119

Query: 159 HLHALRLQF----TEKLQRLGRSDLAT 181
               L          K    GRS+ A 
Sbjct: 120 ASWQLYQVLRSLPDTKEVADGRSEEAE 146


>gi|157129632|ref|XP_001655429.1| hypothetical protein AaeL_AAEL011560 [Aedes aegypti]
 gi|108872139|gb|EAT36364.1| conserved hypothetical protein [Aedes aegypti]
          Length = 339

 Score = 56.9 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 12/177 (6%)

Query: 2   TTIRVHEGDI---PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
             I V + DI    A    R    +A+  E +          ++ ++  +          
Sbjct: 104 NHIFVFQTDIKYHDAIKYLRNQRLLAIGMEGIEGGRHSTSPSLLSIATPERIYVFD--VM 161

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRPVFCTKIAS-RLTRTYTN 115
                 +L  +L D K  ++ H  R   D  VL + +   +   F T +A    T  Y +
Sbjct: 162 WMNVPKDLRAILGDPKVRRVAHNARLVED--VLRHRYQAPLGKCFDTLVAHISTTNDYDD 219

Query: 116 QHGL--KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           QH L  ++ L + L +  +    S  ++   L++ Q + AA +V  L AL+     +
Sbjct: 220 QHELSIQECLAKYLNLPSNFFDSSIKFNNRPLNESQRKAAAKNVAFLLALQDYLVHE 276


>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
 gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
           exonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 939

 Score = 56.9 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 26/178 (14%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------------AP 64
              +A+DTET  L P + +L  + LS   G    I +A    +                 
Sbjct: 356 APLVAIDTETTSLDPMQAQLVGISLSAAPGEACYIPVAHRGPDVAGLPEHGQLSREFVLE 415

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123
            +   L D  R K+    ++DI V     G+++R V   T + S +  ++ N HG+    
Sbjct: 416 RMRAWLEDASRPKLGQNLKYDIHVFANH-GIKLRGVAHDTMLQSYVLASHRN-HGMDSLA 473

Query: 124 KELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           + LL +          K      +   DL+    +YAA D      L  +   +++  
Sbjct: 474 ERLLSLKTITYEEVCGKGASQIGFDQIDLARA-TEYAAEDADVTLRLHRRMFPQVEAA 530


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 26/202 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVD 72
                A   DTET  L     ++  +  +        + +       ++       +L D
Sbjct: 368 LGSHSAFCFDTETTSLDTFEAQIVGLSFAVEPQKAYYVALPDDKQKTEEILRRFAPLLED 427

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI- 131
              EK     ++DI+VL          +F T IA  L +    +H +    +  LG    
Sbjct: 428 ASIEKTGQNMKYDISVLGNYGIGVGGRMFDTMIAHYLLQPEL-RHNMDYMAEVFLGYRTI 486

Query: 132 --------SKAQQSSDWSADDLSD-------EQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                    K ++    S   + D       +   YA  D      L+  F +KL     
Sbjct: 487 HFGELFDDDKTKK----SGKPIEDIRKVELGKLKDYACEDADITLQLKNIFGQKLCESSL 542

Query: 177 SDLATS-CCNFLMDRAELDLLG 197
            +L        +   A+++  G
Sbjct: 543 KNLFFDIEMPLVPILAKMESNG 564


>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
 gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
          Length = 936

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 65/200 (32%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  ++ A DTET  +   +  L  V  +   G    + +    ++AP           L
Sbjct: 353 LQACESFAFDTETTSVHYMKAELVGVSFAIEVGKAAYVPLTHDYEDAPEQLDKEWVLAQL 412

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L  +  +KI    ++D  VL +   + ++ + F T I S    +   +H +     +
Sbjct: 413 KPLLESKTIKKIGQNLKYDANVLSHY-DIALQGIEFDTMIESYCYNSVATRHNMDALALK 471

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L       +  +   A  L+  Q+       YAA D      L       L        
Sbjct: 472 YLDYQTVHFEDVAGKGAKQLTFNQIDIEKAGHYAAEDADITLRLHHAIFPALAETASMLS 531

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    L   A ++  G
Sbjct: 532 VFNEIEMPLLPVLARMEQTG 551


>gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4]
 gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4]
          Length = 918

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 19/175 (10%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVD 72
           +  DTET  L P   +L  +  S   G    + +      AP+          +  +L +
Sbjct: 343 VCFDTETTSLDPLTAKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAATLARIKPLLEN 402

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
              +K+    ++D  VL    G+ +  +   T + S +  ++   HG+ D     LG+  
Sbjct: 403 PAIKKVGQNLKYDKHVLANH-GIALNGIAHDTLLQSYVLESHRT-HGMDDLAMRHLGVQT 460

Query: 132 SKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
              +Q +   A  +S  Q+      +YAA D      L      ++    + +  
Sbjct: 461 ITYEQVAGKGAKQVSFSQVALEQASEYAAEDADVTLQLHENLYPQVAEDAKLEFV 515


>gi|224049135|ref|XP_002193489.1| PREDICTED: similar to Werner syndrome [Taeniopygia guttata]
          Length = 1223

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 16/143 (11%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY--GRF-----DIAVL 89
            +  ++Q+   +    +  +++       L  +L DE  +K+     G       D  + 
Sbjct: 93  AKTAVIQMCVTEDKCYLFHVSSMAGFPKGLKRLLEDETIKKVGVGIEGDQWKLMSDFEIK 152

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSD 147
             +F           +A+   +       L   +K L G  + K Q  + S+W    L++
Sbjct: 153 LKSFVELAD------VANEKLKC-KETWSLNGLVKHLFGRQLLKDQSVRCSNWEQFPLNE 205

Query: 148 EQLQYAASDVVHLHALRLQFTEK 170
           EQ  YAA+D    + +  +    
Sbjct: 206 EQKLYAATDAYAGYIVYEKLKNM 228


>gi|213409039|ref|XP_002175290.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212003337|gb|EEB08997.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 315

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 25/176 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI----IRIAAGQKNAPNLVGMLVD 72
            +    +  D E       R  + ++Q+      + +    +RI + +     L  ++  
Sbjct: 118 LQSSPVLGFDME----WTYRTPVSMIQICTSKLILLVHLTRMRIYSPEYFPRRLKELMES 173

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT-------------YTNQHGL 119
               K     + D   L   F V  + +      SR  R                    L
Sbjct: 174 PDHIKCGVAIQGDATRLLKAFQVSSKGLCE---LSRYARAVDPETWIGNPRTSGNRLIAL 230

Query: 120 KDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                + LG+ + K   Q S+W    L   QLQYAA DV     + L+     Q+ 
Sbjct: 231 TKLAHQYLGLPLDKGPVQVSNWDQGKLKASQLQYAAIDVYASLQIFLELERMRQQK 286


>gi|158258485|dbj|BAF85213.1| unnamed protein product [Homo sapiens]
          Length = 514

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 115 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 172

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137
           + +  VF T++A     S  T  Y       L+++L + L +       + K Q+     
Sbjct: 173 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 232

Query: 138 -SDWSADDLSDEQLQYAASDVVH 159
              W    +S   L+  A +  +
Sbjct: 233 PEVWFIRPVSPSLLKILALEATY 255


>gi|34303939|ref|NP_689809.2| exonuclease 3'-5' domain-containing protein 1 [Homo sapiens]
 gi|317373564|sp|Q8NHP7|EXD1_HUMAN RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
           AltName: Full=Exonuclease 3'-5' domain-like-containing
           protein 1
 gi|34192161|gb|AAH30628.2| Exonuclease 3'-5' domain containing 1 [Homo sapiens]
          Length = 514

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 115 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 172

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137
           + +  VF T++A     S  T  Y       L+++L + L +       + K Q+     
Sbjct: 173 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 232

Query: 138 -SDWSADDLSDEQLQYAASDVVH 159
              W    +S   L+  A +  +
Sbjct: 233 PEVWFIRPVSPSLLKILALEATY 255


>gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 59/203 (29%), Gaps = 53/203 (26%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQ---------LSPGDGT-------VDIIRIA- 57
             AR    +A DTET  L        ++Q         ++               + +  
Sbjct: 393 ADARETGIVAFDTETTSLD-------VMQAEIVGFSLAIADNKNDPSGASIRAAYVPLNH 445

Query: 58  -----------------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
                              +   P L  +L D    KI    ++D  +L   +G+  +  
Sbjct: 446 KNGVGDLLGGGLADNQIPLRDALPRLKALLEDTSVLKIAQNLKYD-YLLMKRYGIETKGF 504

Query: 101 FCTKIASRLTRTYTNQ-HGLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------ 151
             T + S +     N  HG+    +  LG      K    S     +++ + +       
Sbjct: 505 DDTMLLSYVLDGGANATHGMDSLSERWLGHKPIAYKDVAGS--GKSNITFDLVDIDRATA 562

Query: 152 YAASDVVHLHALRLQFTEKLQRL 174
           YAA D      L L    +L   
Sbjct: 563 YAAEDADVTLRLWLVLKPRLAAE 585


>gi|119612879|gb|EAW92473.1| exonuclease 3'-5' domain-like 1 [Homo sapiens]
          Length = 514

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFG 94
           +LC +Q++             G +   N L  +L D++  K+ H  R   D   L + +G
Sbjct: 115 KLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSD--CLSHQYG 172

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQH--GLKDNLKELLGIN------ISKAQQS---- 137
           + +  VF T++A     S  T  Y       L+++L + L +       + K Q+     
Sbjct: 173 ILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQEN 232

Query: 138 -SDWSADDLSDEQLQYAASDVVH 159
              W    +S   L+  A +  +
Sbjct: 233 PEVWFIRPVSPSLLKILALEATY 255


>gi|115948459|ref|XP_797941.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115960146|ref|XP_001189124.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 531

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 7/150 (4%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-DGTVDIIRIAAGQKNAP-NLVGMLVDE 73
           A + +  I +D E +    +R  + ++QLS   + +  + R+       P +++ +L D 
Sbjct: 36  ATKQMKVIGLDCEWVTKDGQRQPVALLQLSSPVNQSCLLFRLDQLDGELPESILTILQDR 95

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS--RLTRT-YTNQHGLKDNLKELLGIN 130
              K+      D   L   + +        +  +   L+RT       L++    +L   
Sbjct: 96  NTLKVGVGVIGDAKRLLNDYQIITHGCLDLRHLALRHLSRTLRGRSLSLRELASIVLQHE 155

Query: 131 ISKAQQ--SSDWSADDLSDEQLQYAASDVV 158
           ++K  +    DW A  LS EQ+ YA  D V
Sbjct: 156 MAKDDRVRCGDWEAVPLSKEQIHYAVDDAV 185


>gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40]
          Length = 908

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 L 127
           L
Sbjct: 452 L 452


>gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1]
          Length = 908

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 L 127
           L
Sbjct: 452 L 452


>gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
 gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
          Length = 908

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 L 127
           L
Sbjct: 452 L 452


>gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
 gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
          Length = 908

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 L 127
           L
Sbjct: 452 L 452


>gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
 gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
          Length = 908

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 L 127
           L
Sbjct: 452 L 452


>gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
 gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
          Length = 908

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 L 127
           L
Sbjct: 452 L 452


>gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
 gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
          Length = 908

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 L 127
           L
Sbjct: 452 L 452


>gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
 gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
          Length = 908

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 L 127
           L
Sbjct: 452 L 452


>gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
 gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
          Length = 908

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 L 127
           L
Sbjct: 452 L 452


>gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
 gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I
 gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
          Length = 908

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 L 127
           L
Sbjct: 452 L 452


>gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
 gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
          Length = 893

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 65/205 (31%), Gaps = 27/205 (13%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------------AAGQKNA 63
           A    +  A+D ET  L PR   +  +  S  D     I +                   
Sbjct: 308 ALERSEEFAIDLETTSLDPRDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPRDLVL 367

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122
             L   L      KI    +FD+ VL    GV +  + F T +AS +       HGL   
Sbjct: 368 ERLRPQLESPSPTKIGQNIKFDMQVLATN-GVSLSGIRFDTMLASYVLNPSRQGHGLDAL 426

Query: 123 LKELLGINI-----SKAQQSSDWSADDLSDEQLQ----YAASDVVHLHALRLQFTEKLQR 173
             E LG  +           +     + S  +++    YA  D      L  +F+  L  
Sbjct: 427 ALEHLGHRMISYAEVTGSGKT---QKNFSQVEIETASRYACEDADATWLLHRKFSPLLAE 483

Query: 174 LGRSDL-ATSCCNFLMDRAELDLLG 197
            G  +L        +   A ++  G
Sbjct: 484 NGVEELFHRIEMPLVPILAGMENHG 508


>gi|49118127|gb|AAH73087.1| FFA-1 protein [Xenopus laevis]
          Length = 1434

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 16/142 (11%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY--GRF-----DIAVLF 90
           ++ ++Q+   +    +  I+        L  +L DE   K+     G       D  +  
Sbjct: 90  KVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYELKL 149

Query: 91  YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDE 148
             F         +++A++  R    +  L   +K L    + K    + S+W    L+++
Sbjct: 150 KGFIEL------SEMANQKLRC-KEKWSLNGLIKHLFKEQLIKESSVRCSNWDIFPLTED 202

Query: 149 QLQYAASDVVHLHALRLQFTEK 170
           Q  YAA+D      +  +    
Sbjct: 203 QKLYAATDAYAGLLIYKKLEGM 224


>gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
 gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
          Length = 976

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 65/184 (35%), Gaps = 41/184 (22%)

Query: 21  DAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAG-------------QKN 62
           + +A+DTET  L P    L     C+     G+ + D+  I  G             +  
Sbjct: 381 EIVALDTETNSLNPLDAELVGIGFCL-----GEESNDLFYIPLGHQSQKDEMNQLAIEDV 435

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121
             NL   +   ++EK     +FD  + +   G+ +  V F T +A  +      +HGL +
Sbjct: 436 FLNLRTWIESPEKEKTLQNCKFDRQIFYNH-GLNLSGVTFDTLLADYILNNQ-EKHGLSE 493

Query: 122 NLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                 G         +  +K     D +   +      Y   DV   + +   F E+ +
Sbjct: 494 ICFREFGFKPPSFKETVGKNKDFSFVDINHASI------YCGYDVFLTYKIAKIFKERFR 547

Query: 173 RLGR 176
           +  +
Sbjct: 548 KEKK 551


>gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55]
 gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55]
          Length = 930

 Score = 56.9 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      +  +  +   G    + +A    +AP+          L
Sbjct: 348 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLALL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L     + +R + F T + S +  +   +H +      
Sbjct: 408 KPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+      +YAA D      L L+   KLQ+  G  +
Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 526

Query: 179 LATS-CCNFLMDRAELDLLGWE 199
           +        +   + ++  G +
Sbjct: 527 IFKHIEMPLVPVLSRVERNGVK 548


>gi|322494963|emb|CBZ30266.1| hypothetical protein, unknown function [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 547

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 14/142 (9%)

Query: 30  LGLMPRRDR---LCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD 85
           +G+     R   L +VQ +       + I    G+     +   L D    K       D
Sbjct: 15  MGMDSEWFRDLPLAVVQFATSSHCFVLHISFFDGRILPAAVKEALCDPSIIKCGVGVSGD 74

Query: 86  IAVLFYTFGVRVRPVFCTKIA--SRLTRTY-TNQHGLKDNLKELLGINI--SKAQQSSDW 140
           ++ L     + ++ V    IA  S L   +   Q  LK   K +  ++I   K    S+W
Sbjct: 75  VSRLQKEQNITIQSVLD--IAHYSALLGLHQGAQSNLKVLAKSVANLSIEKDKMITRSNW 132

Query: 141 SADDLSDEQLQYAASDVV--HL 160
               LSD ++ YAA D +  +L
Sbjct: 133 EL-PLSDSRVNYAAEDALASYL 153


>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
 gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
          Length = 914

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 28/217 (12%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + + D+          +  A DTET  L   + ++  V  +   G    + +A     AP
Sbjct: 321 LTQADLDDWLNRLNQAELFAFDTETTSLDYLQAQIVGVSFAVQVGEAAYVPLAHDYLGAP 380

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L + K+ KI    ++D  VL    G+ ++ + F T + S +  + 
Sbjct: 381 QQLSCDNVLAVLKPLLENPKKRKIGQNLKYDAHVLANH-GIHLQGMAFDTMLESYVLNS- 438

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALR 164
           T +H +    +  L           D        LS  Q+       YA  D      L 
Sbjct: 439 TTKHDMDSLAQIYLQKT---TITFEDVAGKGKKQLSFNQIPLEHATPYACEDADITLQLH 495

Query: 165 LQFTEKLQRLGRSDLATS--CCNFLMDRAELDLLGWE 199
               E+LQ   + +          +     ++  G +
Sbjct: 496 QNLWEQLQNRPKLERIFDDLEMPLIPVLIRMERHGVK 532


>gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22]
 gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22]
          Length = 930

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      +  +  +   G    + +A    +AP+          L
Sbjct: 348 LKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVLALL 407

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L     + +R + F T + S +  +   +H +      
Sbjct: 408 KPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIAFDTMLESYILDSVAGRHDMDSLSDR 466

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR-LGRSD 178
            L       ++ +    + L+  Q+      +YAA D      L L+   KLQ+  G  +
Sbjct: 467 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPKLQQHEGPLN 526

Query: 179 LATS-CCNFLMDRAELDLLGWE 199
           +        +   + ++  G +
Sbjct: 527 IFKHIEMPLVPVLSRVERNGVK 548


>gi|327279914|ref|XP_003224700.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Anolis
           carolinensis]
          Length = 1327

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 4/136 (2%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           ++ ++QL   +    +  I++       L  +L D   +KI      D   L   F V +
Sbjct: 90  KVALIQLCESEEKCYLFHISSMSNFPGGLKRLLEDNHIKKIGVGIEGDKWKLMRDFEVNL 149

Query: 98  RPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAA 154
             +     +A++  R       L D +K L    +   K  +  +W    L++EQ  YAA
Sbjct: 150 GDLVDLADLANKKLRC-KEIWSLNDLVKHLFHKQLLKEKLVRCGNWEEFPLTEEQKLYAA 208

Query: 155 SDVVHLHALRLQFTEK 170
           +D      +  +    
Sbjct: 209 TDAYAGFLIYKKLMTM 224


>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
 gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
          Length = 968

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 29/193 (15%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRL---CI-VQ-----------LSPGDGTVD---IIRI 56
             A      A DTET  L P + +L    + +Q            +  DG +    I+  
Sbjct: 373 LEAEKQGYFAFDTETTSLDPMQAKLVGFSLALQPGKAAYIPLEHTAGEDGLLAGGRIVPQ 432

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              QK    L  +L ++   KI    ++D  V+     + +R    T + S       + 
Sbjct: 433 IETQKALALLKPILENQAILKIGQNIKYDWLVMKQY-DIVMRSFDDTMLLSYALEAGIST 491

Query: 117 HGLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFT 168
           HG+    +  LG      K    +      +S  Q+       YAA D      L     
Sbjct: 492 HGIDVLSERWLGHKPITYKDLTYN--GKKIVSFAQIDLKQATLYAAEDADITLRLWQVLK 549

Query: 169 EKLQRLGRSDLAT 181
            +L     + +  
Sbjct: 550 PQLVAQRMTKIYE 562


>gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
          Length = 605

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A  TET  L      L  +  +   G    I +A    +AP+          L
Sbjct: 23  LEKAPVFAFATETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +    + 
Sbjct: 83  KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDSLAER 141

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 142 WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195


>gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205]
          Length = 985

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 68/202 (33%), Gaps = 34/202 (16%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRL---------CIVQLSP-----GDGTVDIIRIAAGQ 60
           C  R    +A+DTET  L P +  L          + QL+           D  ++   Q
Sbjct: 385 CCDRQSP-VALDTETTSLNPFQAELVGLGVCWGEGLDQLAYIPLGHQAELSDPAQLPLDQ 443

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L   L      K     ++D  +L          V  T +A    R    +HGL+
Sbjct: 444 VLG-ALAPWLSSAAHPKTLQNAKYDRLILLRHGLPLAGVVMDTLLA-DYLRDANAKHGLE 501

Query: 121 DNLKELLG-------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              +   G         + K    +++SA  ++   L Y   DV   + L      +L+ 
Sbjct: 502 LLAQRNFGFLPTSYSELVPKG---ANFSAVPMAQAAL-YCGMDVHVTYRLTPLLRGQLEA 557

Query: 174 LGRSDLATSCCNFLMDRAELDL 195
           LG           L+D+ EL L
Sbjct: 558 LG------EPLTALLDQVELPL 573


>gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11]
 gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11]
          Length = 932

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
            D  A DTET  L      L  +  +  +G    + +A    +AP           L   
Sbjct: 352 ADVAAFDTETDSLDYMVANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPY 411

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D+ + K+    ++D +VL     + ++ + F T + S +  +   +H +       L 
Sbjct: 412 LEDDNKAKVGQNLKYDASVLARY-DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQ 470

Query: 129 INISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177
            N    ++ +      L+  Q+       YAA D      L      KL+   + 
Sbjct: 471 HNTISFEEIAGKGKKQLTFNQIALEQAAPYAAEDADITLRLHHVLNAKLEADEKL 525


>gi|149410714|ref|XP_001508312.1| PREDICTED: similar to Werner syndrome [Ornithorhynchus anatinus]
          Length = 1813

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 16/140 (11%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK--IFHYGRF-----DIAVLF 90
           R+ ++QL   D    +  I++       L  +L +E   K  +   G       D  +  
Sbjct: 482 RVALIQLCVSDQKCYLFHISSMSGFPKGLKMLLENEAIRKAGVGIEGDQWKLLSDFEIKL 541

Query: 91  YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
            +F           +A+   +    +  L   +K L    +   KA + S W    L+++
Sbjct: 542 KSFVELAD------VANEKLKC-KEKWSLNSLVKHLFNKQLLKDKAIRCSSWDEFPLTED 594

Query: 149 QLQYAASDVVHLHALRLQFT 168
           Q  YAA+D      +  +  
Sbjct: 595 QKLYAATDAYAGFIIYQKLA 614


>gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02]
 gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18]
 gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140]
 gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19]
 gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11]
 gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18]
 gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1]
 gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1]
 gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332]
 gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679]
 gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035]
 gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 908

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 35/218 (16%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 314 TTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIAFQAGEAVYIPVGHSLTAAP 373

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 374 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIAGDAMLASYIIESH 432

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +     LG+            +K    +D +    ++    YAA D      L
Sbjct: 433 L-GHGLDELSGRWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 487

Query: 164 RLQF-----TEKLQRLGRSDL--ATSCCNFLMDRAELD 194
             +       ++L+   + +L  A        +  ++D
Sbjct: 488 EARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQID 525


>gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114]
 gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Vibrio fischeri ES114]
          Length = 932

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
            D  A DTET  L      L  +  +  +G    + +A    +AP           L   
Sbjct: 352 ADVAAFDTETDSLDYMVANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPY 411

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D+ + K+    ++D +VL     + ++ + F T + S +  +   +H +       L 
Sbjct: 412 LEDDNKAKVGQNLKYDASVLARY-DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQ 470

Query: 129 INISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRS 177
            N    ++ +      L+  Q+       YAA D      L      KL+   + 
Sbjct: 471 HNTISFEEIAGKGKKQLTFNQIALEQAAPYAAEDADITLRLHHVLNAKLEADEKL 525


>gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090]
 gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2]
 gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
 gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090]
 gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
          Length = 930

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 35/218 (16%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +     LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSGRWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQF-----TEKLQRLGRSDL--ATSCCNFLMDRAELD 194
             +       ++L+   + +L  A        +  ++D
Sbjct: 510 EARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQID 547


>gi|242054353|ref|XP_002456322.1| hypothetical protein SORBIDRAFT_03g033970 [Sorghum bicolor]
 gi|241928297|gb|EES01442.1| hypothetical protein SORBIDRAFT_03g033970 [Sorghum bicolor]
          Length = 208

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 23  IAVDTET--LGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           + +D E             + ++Q+  G     + +I        +L   L D++   + 
Sbjct: 53  VGIDVEWRPSRTTTNHVPPVALLQICVG-RRCLVFKILHADYVPQSLSDFLADQRFAFVG 111

Query: 80  HYGRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ-- 135
              R D A L   +G++V  +    T  A++L +      GL+  + E++G+ + K    
Sbjct: 112 VGVRDDAAKLRSGYGLKVGRMVDLRTLAATKLRKPALRGAGLQALVSEVMGVEMEKPHHV 171

Query: 136 QSSDWSADDLSDEQLQYAASD 156
           + S W A  L+ +QL+YA +D
Sbjct: 172 RVSAWDAPKLTYDQLKYACAD 192


>gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
          Length = 929

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 74/214 (34%), Gaps = 24/214 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +      AP           L
Sbjct: 345 LKRAPVFAFDTETDSLDTLTANLVGMSFAITAGDAAYLPLGHDYLGAPEQLDRDAVLAAL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR--TYTNQHGLKDNL 123
             +L D    KI    +FD  VL    G+ ++ + + T + S +        +H +    
Sbjct: 405 KPLLEDSNLLKIGQNIKFDCGVLVRY-GIELQGIAYDTMLESYVLNSVAGMGRHDMDSLA 463

Query: 124 KELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRS 177
           +  L    +  ++ +    + L+  Q+       YAA D      L      +L+++   
Sbjct: 464 ERHLNYKTTTFEEIAGKGKNQLTFNQVPVEQAAMYAAEDADVTLQLHQVIWPQLEKVPAL 523

Query: 178 DLA--TSCCNFLMDRAELDLLGWE-NVDIFS-HS 207
           +     +    +M  + ++  G   N DI + HS
Sbjct: 524 EKVFLETEMPLIMVLSRMERAGVLINSDILAEHS 557


>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
          Length = 930

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E  + A  A  R     A DTET  L      L  +  +   G    I +A    +AP
Sbjct: 335 LDEAALEALIARLRQAGCFAFDTETDSLDVLSANLVGISCADAPGQACYIPLAHDYLDAP 394

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L DE   KI    ++DI V+    G+ +R V F T + S +  + 
Sbjct: 395 RQLDRQYVLARLQPLLEDEGVAKIGQNLKYDIGVMARY-GITLRGVAFDTMLESYVLNSV 453

Query: 114 TNQHGLKDNLKELLGIN 130
             +H +       L   
Sbjct: 454 AGRHDMDSLAARHLDHK 470


>gi|154418327|ref|XP_001582182.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
 gi|121916415|gb|EAY21196.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
          Length = 645

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 53/182 (29%), Gaps = 49/182 (26%)

Query: 33  MPRRDR-LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF----HYGRFDIA 87
                  +C++ +S  D    I  +        +L  +       K+F    H  +    
Sbjct: 161 DHYFPNVICVLCISTRDCEYLID-VLELPDAITSLAPIFSARDITKVFGNAAHCCK---- 215

Query: 88  VLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKEL-------------------- 126
            L +  G+  +   F    A++          L+D  ++                     
Sbjct: 216 -LLHQAGISDIYNSFDVTTAAQHLNI---STSLEDLTQDFRNRLQEGWIPDSARKVVPPP 271

Query: 127 ------------LGINISKAQQSS--DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                       L   +++++ ++  DW    LS  Q++ A   V +L  L      KL 
Sbjct: 272 DFPHNKVCDSEKLSQILTESESNAMQDWRIRPLSLSQMRLARQRVHYLLYLYDSLRLKLT 331

Query: 173 RL 174
             
Sbjct: 332 EE 333


>gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle]
          Length = 608

 Score = 56.5 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 8   EGDIP--AECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNA 63
           E D+    +    +   + +D+ET GL    D  R  +VQ         ++ +  G   A
Sbjct: 21  ESDLDGFMDFIRAHQGFLGLDSETTGLDIYNDGFRCRLVQFGTPSE-AWVVPVERGGPYA 79

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLTRT-----YT 114
            ++   L   +   + H   +D+ V   T GV +  ++     T+I + L          
Sbjct: 80  GDVKRALEMVQGF-VLHNAAYDLQVFERTLGVPMEAMWPKVKDTRILAHLIDPRGKDEGG 138

Query: 115 NQHGLKDNLKELLG 128
           + H L+D  +  + 
Sbjct: 139 SGHSLEDLTRRYID 152


>gi|193078597|gb|ABO13627.2| exonuclease putative [Acinetobacter baumannii ATCC 17978]
          Length = 213

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+                    L  +L + K+ K+    + D   +F+  G+++   
Sbjct: 70  LIQLATEHKAYL---FHVNSSTLKFLQPILSNPKQIKVGFGLKND-KHIFHKKGIKLESC 125

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
               +A   +   +  Q G++  +  LLG  ++K++   +S+W+   L+ +Q+ 
Sbjct: 126 ID--LAKGFSHFGFKQQMGVQKAVALLLGQYLAKSKKIGTSNWARKPLTSQQIS 177


>gi|126643245|ref|YP_001086229.1| exonuclease putative [Acinetobacter baumannii ATCC 17978]
          Length = 186

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+                    L  +L + K+ K+    + D   +F+  G+++   
Sbjct: 43  LIQLATEHKAYL---FHVNSSTLKFLQPILSNPKQIKVGFGLKND-KHIFHKKGIKLESC 98

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
               +A   +   +  Q G++  +  LLG  ++K++   +S+W+   L+ +Q+ 
Sbjct: 99  ID--LAKGFSHFGFKQQMGVQKAVALLLGQYLAKSKKIGTSNWARKPLTSQQIS 150


>gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223]
 gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223]
          Length = 890

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    I +A    +AP           L
Sbjct: 307 LQQAELFAFDTETDSLDYMVANLVGMSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVIAQL 366

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 367 KPLLEDESKAKVGQNLKYDASVIARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 425

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+       YAA D      L  + +  +++  +   
Sbjct: 426 FLQHSCISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQ 485

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 486 VYSEIEMPLVPVLSRIERTG 505


>gi|169601620|ref|XP_001794232.1| hypothetical protein SNOG_03678 [Phaeosphaeria nodorum SN15]
 gi|160705977|gb|EAT88883.2| hypothetical protein SNOG_03678 [Phaeosphaeria nodorum SN15]
          Length = 721

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 21/137 (15%)

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ- 116
             +   P L  +L      K+    + D   L     ++ + VF       L        
Sbjct: 197 PEELMPPTLKKILETPDILKVGVAVKGDFTRLERYLNIQPQGVFELSRLHNLVEGNITSA 256

Query: 117 -------HGLKDNLKELLGINISKAQQS------------SDWSADDLSDEQLQYAASDV 157
                   GL   + + L + + K +Q             SDWS   L  +Q+QYAA+D 
Sbjct: 257 QQVSNKLVGLAAQVLQHLQLPLYKGEQLADDPADTASVRESDWSK-PLDLQQIQYAAADA 315

Query: 158 VHLHALRLQFTEKLQRL 174
                L      K +++
Sbjct: 316 YAGFRLYDILEYKRKQM 332


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 36/209 (17%)

Query: 2   TTIRVHEGD--IPAECAARYV--------DAIAVDTETLGLMPRRDRLC-IVQLS----P 46
            TI   E D  +      R          ++I+ DTET G       L  +V LS    P
Sbjct: 335 KTIENTEHDYRLIDTADLRKALIEELLQQESISFDTETTGTD---ANLAELVGLSFSVKP 391

Query: 47  GDGTVDIIRI--AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCT 103
           G G    +       Q        +L +E   KI    ++D+ +L   +G+ ++  +F T
Sbjct: 392 GAGYYIPLPPERTLAQPILDEFKVVLENENIAKIGQNIKYDMLIL-KWYGLEIKGKLFDT 450

Query: 104 KIASRLTRTYTNQHGLKDNLKELLG---INISK------AQQSSDWSADDLSDEQL-QYA 153
            +A  L    T +H +    +  L    I+I+K        Q    +  D+   Q+  YA
Sbjct: 451 MLAHYLIDPDT-RHNMDVLSENYLCYSPISITKLIGPKGKNQG---NMRDVPVAQVVDYA 506

Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           A D      L   F   L+ L    LAT 
Sbjct: 507 AEDADVTLQLANVFRPMLKDLNAEQLATE 535


>gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4]
 gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4]
          Length = 892

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 25/204 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
              V A AVD ET  L P    +  +  S  +     I +      AP+          L
Sbjct: 310 LTAVRAFAVDLETTSLNPLEAEIVGISFSFREHEAYYIPVGHRYPGAPHQLSRDDVLGAL 369

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
             +L+D ++ KI    ++D  VL    G+ ++ ++  T +AS L        GL     E
Sbjct: 370 KPLLLDPEKHKIGQNIKYDYQVLRRA-GIDMQGIWCDTMLASYLLNPTRTSQGLDSLAVE 428

Query: 126 LLGINI-------SKAQQSSDWSADDLSDEQLQYAA--SDVVHLHALRLQFTEKLQRLGR 176
            L   +        K ++  +++  ++    + Y+   +D  +L  L   F  +L   G 
Sbjct: 429 FLDHRMISYAEVAGKGKEQKNFAQVEVEKASV-YSCEDADATYL--LHKLFLPRLAESGM 485

Query: 177 SDLATS-CCNFLMDRAELDLLGWE 199
             L        +   AE++L G +
Sbjct: 486 ERLFFELEMPLVKILAEMELYGVK 509


>gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
 gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
          Length = 908

 Score = 56.2 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA-------GQKNAPNLVG 68
           + +    I++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYISIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  ML-VDEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   + K   I    +FD  +L    F     P F T IA+ L  T + +  L    ++ 
Sbjct: 396 LFKSNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAEKY 451

Query: 127 L 127
           L
Sbjct: 452 L 452


>gi|309356436|emb|CAP37027.2| CBR-EGAL-1 protein [Caenorhabditis briggsae AF16]
          Length = 578

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 37/171 (21%)

Query: 23  IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ--KNAPNLVGMLVDEKREKIF 79
           + VD E  L        L ++        + I  +A+           G+L  EK  K+ 
Sbjct: 327 VGVDGEIFLS-------LGVI---ATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT----------------YTNQHGLKDNL 123
           H  R   ++L + + V +R VF T++A  L +                    +     +L
Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHDKFGKPVHEMRPITFINLQRVYYPQSL 436

Query: 124 KELLGINISKAQQSSD----WSADDLSDE-QLQYAASDVVHLH-ALRLQFT 168
             L  +   K  QS +    W    +++E QL     +   L  AL    +
Sbjct: 437 M-LSDVTPRKMSQSPNLIFSWGVRPITEEFQLT-IVEEAHCLLSALYQALS 485


>gi|293610667|ref|ZP_06692967.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827011|gb|EFF85376.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 213

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+                    L  +L ++K+ K+    + D   +F+  G+ +   
Sbjct: 70  LIQLATAQKAYL---FHVNSSTLKFLQPILSNQKQIKVGFGLKND-KHIFHKKGIELESC 125

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
               +A   +   +  Q GL+  +  L G  ++K++   +S+W+   L+ +Q+ 
Sbjct: 126 VD--LAKGFSHFGFKQQMGLQKAVALLFGQYLAKSKKVGTSNWARKPLTSQQIN 177


>gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus parainfluenzae T3T1]
          Length = 932

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            +     A+DTET  L      L  +  +  +G    + +      AP           L
Sbjct: 352 LKQAKLFALDTETDNLDYMAANLVGISFALENGEAAYLPLQLDYLGAPKTLEKTTALTLL 411

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L +   +K+    ++D+ +     G+ V+ V F T + S +  + T +H + D  K 
Sbjct: 412 KPILENPTIQKVGQNFKYDLTIFARN-GIDVQGVAFDTMLESYVLNS-TGRHNMDDLAKR 469

Query: 126 LLGIN 130
            LG  
Sbjct: 470 YLGHQ 474


>gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
 gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
          Length = 906

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 323 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 382

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 383 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 441

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 442 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDSKLEQ 501

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 502 VYREIEMPLVPVLSRIERTG 521


>gi|167999688|ref|XP_001752549.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696449|gb|EDQ82788.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 439

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 23/140 (16%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR----EKIFHYGRFDIAVLFYTFGVR 96
           ++QLS  +    ++++        +L  +L +         I      D   L   +G  
Sbjct: 270 LLQLSLEE-CCLLVQLRFIDMLPASLKSLLANPNIKMGGVGIL----ADTKKLKKDYG-- 322

Query: 97  VRPVFC------TKIA-SRLTRTYTNQHGLKDNLKELLGI--NISKAQQSSDWSADDLSD 147
              + C      T +A S L  T   + G+    +++LG+    +K    S+W   DL+ 
Sbjct: 323 ---LICAGEVELTTLAVSTLKNTSLKKSGIATLTEKVLGVPYEKNKRVTMSNWENRDLTY 379

Query: 148 EQLQYAASDVVHLHALRLQF 167
            Q+ YAA+D    +++ +  
Sbjct: 380 AQIHYAAADAWLSYSIMMAL 399


>gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
 gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
          Length = 906

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 323 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 382

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 383 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 441

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 442 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDSKLEQ 501

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 502 VYREIEMPLVPVLSRIERTG 521


>gi|242057613|ref|XP_002457952.1| hypothetical protein SORBIDRAFT_03g023091 [Sorghum bicolor]
 gi|241929927|gb|EES03072.1| hypothetical protein SORBIDRAFT_03g023091 [Sorghum bicolor]
          Length = 547

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 13/156 (8%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG 82
           + +DTE       R ++ ++Q+  G     + ++        +L   L DE    +    
Sbjct: 280 VGLDTE--WFESDRKKIALIQICVGK-KCLLFKVGHAGIIPDDLKSFLADENHVFVGVAI 336

Query: 83  RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH-----GLKDNLKELLGINIS-KA-- 134
             D+  L     + +      ++ + +      +H      L    + LLG+ +  K   
Sbjct: 337 ANDLDRLREGHQIELSNK--VELQAMVPFIIPGKHWDNVPSLATLAQVLLGMRVEGKGTA 394

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            +  DW  + L+D Q+ YA +DVV  + +      +
Sbjct: 395 LRYKDWDNELLTDSQIHYACTDVVVPYMIGDMLQNE 430


>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
 gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
          Length = 938

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 26/180 (14%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL----------- 66
                +A+DTET  L P + +L  + LS   G    I +A    +   L           
Sbjct: 353 EAAPLVAIDTETTSLDPMQAQLVGISLSVEPGVACYIPVAHRGPDVAGLPDHGQLSREFV 412

Query: 67  ----VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121
                  L D  R K+    ++D+ V     GV++R V   T + S +  ++ N HG+  
Sbjct: 413 LGRMRAWLEDASRPKLGQNLKYDVHVFANH-GVKLRGVAHDTMLQSYVLASHRN-HGMDS 470

Query: 122 NLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
             + LL +          K      +   DL+    +YAA D      L  +   +++  
Sbjct: 471 LAERLLSLKTITYEEVCGKGASQIGFDQIDLARA-TEYAAEDADVTLRLHRKMFPQVEAA 529


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 75/229 (32%), Gaps = 36/229 (15%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQK 61
           T+R  E       AA+     AVDTET GL P    +    ++   G    + +   G  
Sbjct: 332 TVRTAEALQKWVSAAQEAGICAVDTETDGLDPLAANIVGFSIATAPGKACYVPLKHEGTL 391

Query: 62  NAPNLVGMLVD------------EKREKIFHYGRFDIAVLFYTFGVRVRPVF---CTKIA 106
            AP    + VD            +   KIFH  +FD+ +L +  G+ +  +     T + 
Sbjct: 392 EAPTGEQLAVDAALKLLAPLLQDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLI 450

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHL 160
           S       +  G+ +     L          +    + L   Q+      +YAA D    
Sbjct: 451 SYSQSAGLHGQGMDELSAMHLSHTPISYDSVTGTGRNRLPFAQVPVATATKYAAEDADVT 510

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNFL-------------MDRAELDLL 196
             L       L+      L       L             +DRAELD L
Sbjct: 511 LRLWHVLHPTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRAELDRL 559


>gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches]
 gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches]
          Length = 608

 Score = 56.2 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 8   EGDIP--AECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNA 63
           E D+    +    +   + +D+ET GL    D  R  +VQ         ++ +  G   A
Sbjct: 21  ESDLDGFMDFIRAHQGFLGLDSETTGLDIYNDGFRCRLVQFGTPSE-AWVVPVERGGPYA 79

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLTRT-----YT 114
            ++   L   +   + H   +D+ V   T GV +  ++     T+I + L          
Sbjct: 80  GDVKRALEMVQGF-VLHNAAYDLQVFERTLGVPMETMWPKVKDTRILAHLIDPRGKDEGG 138

Query: 115 NQHGLKDNLKELLG 128
           + H L+D  +  + 
Sbjct: 139 SGHSLEDLTRRYID 152


>gi|325123765|gb|ADY83288.1| ribonuclease D [Acinetobacter calcoaceticus PHEA-2]
          Length = 213

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+                    L  +L ++K+ K+    + D   +F+  G+ +   
Sbjct: 70  LIQLATTQKAYL---FHVNSSTLKFLQPILSNQKQIKVGFGLKND-KHIFHKKGIELESC 125

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
               +A   +   +  Q GL+  +  L G  ++K++   +S+W+   L+ +Q+ 
Sbjct: 126 VD--LAKGFSHFGFKQQMGLQKAVALLFGQYLAKSKKVGTSNWARKPLTSQQIN 177


>gi|300176795|emb|CBK25364.2| unnamed protein product [Blastocystis hominis]
          Length = 287

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 12/134 (8%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGV 95
           L I+QL+  +  + I      +   P+L  ++ DEK  K     H    D   L    GV
Sbjct: 28  LSIIQLTFRNVNIIIQVPLLDELPPPSLNVIMKDEKILKSGIGIH---EDCNKLCSYLGV 84

Query: 96  R-VRPVFC-TKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQL 150
             V  +   T IA +L      +  L+    + +    + +    +  +W A  LS+EQ+
Sbjct: 85  EEVNSIVDVTDIA-KLMGHKDLKTSLQYLTSKYIHFHPLKLDNKIRCGNWDAQTLSNEQI 143

Query: 151 QYAASDVVHLHALR 164
            YAA D  +   L 
Sbjct: 144 LYAAHDSYYSRELF 157


>gi|115395196|ref|XP_001213485.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114193054|gb|EAU34754.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 396

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 80/216 (37%), Gaps = 31/216 (14%)

Query: 3   TIRVHEGDIPAECAARYV---DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVD--- 52
           T+        AE  A++    D +  D E           ++ + +VQL+  +       
Sbjct: 157 TVHYCRSVKSAEDVAQHFLHDDILGFDLEWKAQASTQDSIQNNVSLVQLANRERIALFHI 216

Query: 53  -IIRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
            + R A G  +  AP+L  +L   +  K+    + D   +    G+  R +F      +L
Sbjct: 217 AMFRPALGLADLVAPSLRAILESPRITKVGVSIKADSTRVRKYLGINTRAIFELSHLHKL 276

Query: 110 TRTYTNQ--------HGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVH 159
            +   +           L + ++E  G+ ++K    +  DW+   L+  Q+QYAASD   
Sbjct: 277 VKYCYSNPRLINKRLVNLSEQVEEHFGLPLAKEDEVRRGDWTHA-LNYRQVQYAASDPYA 335

Query: 160 LHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
              L      K +       A      L   AELD+
Sbjct: 336 CLCLFYAMDAKRK-------ALDPVPPLPAHAELDI 364


>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
 gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
          Length = 1004

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 11/133 (8%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           +     G++    L  +L D    K+    ++   V+    G+ +R    T + S +   
Sbjct: 465 VDSQVPGRETLSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSFDDTMLMSYVLDA 523

Query: 113 YTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVHLHALR 164
               HG+    +  LG      K    +      L+      D+   YAA D      L 
Sbjct: 524 GNGAHGMDSLAERWLGHTPIAYKDVTGT--GRSSLTFDFVDIDKATAYAAEDADIALRLW 581

Query: 165 LQFTEKLQRLGRS 177
                +L   G +
Sbjct: 582 HVLKPRLAAKGLT 594


>gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
 gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
          Length = 932

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 19/162 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKI 78
           +  DTET  +      L  +           +          K          +E+  K+
Sbjct: 362 VCFDTETTSVNALEAELVGISFCWSAHKGYYVPFPTDKVEATKLLETFRPFFENERIGKV 421

Query: 79  FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130
               ++D+ VL     + VR  +F T IA  L      +H +    +  L          
Sbjct: 422 GQNLKYDLKVLQNY-NIEVRGALFDTMIAHYLLNP-DMRHNMDILSETYLNYTPIAIESL 479

Query: 131 ISKA-QQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170
           I K   Q S      +  +Q+ +YA  D      L+  F E+
Sbjct: 480 IGKGKAQRS---MRTVPLDQVKEYAVEDADVTWQLKNVFKEE 518


>gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly]
 gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly]
          Length = 922

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 15/193 (7%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------PNLVGM 69
            +    IA+DTET  +      +  + +S  +     I I   +KN+            +
Sbjct: 350 LKKASYIAIDTETTSINVYESNIIGISVSFKEFESYYIPIETKEKNSIGKEYIIQKFNEL 409

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
              + +  I    +FD  VL       +   F T IA+ +    T +  L     + L  
Sbjct: 410 FNSQPKL-IGQNYKFDYKVLKRHGFNVISAYFDTMIAAYVIDPNT-KVSLDFLAAKYLMH 467

Query: 130 NISKAQ----QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
              K +    Q S      L      YAA D      L     +KL+      L  +   
Sbjct: 468 KNIKYEEIVPQHSTLKDIPLEIA-SNYAAEDADITFRLFNILRKKLKEDNLESLMKNIEM 526

Query: 185 NFLMDRAELDLLG 197
            F     E++  G
Sbjct: 527 PFSNVIIEMEENG 539


>gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
          Length = 932

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E D+       +     A+DTET  L      L  +  +  +G    + +      AP
Sbjct: 340 LTEADLNRWVEKLKQAKLFALDTETNNLDYMAANLVGISFALENGEAAYLPLQLDYLGAP 399

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L +   +K+    ++D+ +     G+ V+ V F T + S +  + 
Sbjct: 400 KTLEKTTALALLKPVLENPAIQKVGQNFKYDLTIFARN-GIDVQGVAFDTMLESYVLNS- 457

Query: 114 TNQHGLKDNLKELLGIN 130
           T +H + D  K  LG  
Sbjct: 458 TGRHNMDDLAKRYLGHQ 474


>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
 gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
          Length = 996

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 54/199 (27%), Gaps = 56/199 (28%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------------------- 56
           AA     ++ DTET  L   +  L  V LS   G    + +                   
Sbjct: 401 AAFEKGYVSFDTETTSLDAMQAELVGVSLSTEPGKACYVPLGHVDGEGDLLGGGGLVEGQ 460

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              +     L  ML D    KI    ++D  V+    G+ + P   T + S         
Sbjct: 461 IPLKDALDVLKPMLEDRSVLKIAQNLKYDWLVMTRY-GIDITPFDDTMLLSYTVDAGKGG 519

Query: 117 HGLKDNLKELLG---------------------INISKAQQSSDWSADDLSDEQLQYAAS 155
           +G+ +  +  L                      + I KA                 YAA 
Sbjct: 520 NGMDELSERWLDHKPIPFKEICGSGKSMITFDKVAIDKAT---------------AYAAE 564

Query: 156 DVVHLHALRLQFTEKLQRL 174
           D      L L    +L   
Sbjct: 565 DADVTLRLWLILKPRLASE 583


>gi|123509148|ref|XP_001329802.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
 gi|121912850|gb|EAY17667.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
          Length = 518

 Score = 55.8 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 18/150 (12%)

Query: 21  DAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + IA+D E     P      +C+ QL    G + I R +  Q N   L  +  ++   K 
Sbjct: 77  NPIALDLE---WHPFNPSAGVCLFQLCSSHGCLLIKRESKKQCN-DLLNFLTTNQFFMKD 132

Query: 79  FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELL-----GINIS 132
                 DI +L  TFG      V    +A+++ R    + G  + + +       G   +
Sbjct: 133 I--AS-DIKMLRTTFGQDFTFKVCD--VAAQILRRNHLKEGFDEMVAQFCSDTPCGEFKN 187

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           K    S W+   LS  Q+ YAA+D V L+A
Sbjct: 188 KKISRSKWNLK-LSPCQILYAANDAVALYA 216


>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
 gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
 gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
          Length = 934

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 530 VYREIEMPLVPVLSRIERTG 549


>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
 gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
          Length = 934

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 530 VYREIEMPLVPVLSRIERTG 549


>gi|225556093|gb|EEH04383.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 963

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQK-------NAPNLVGMLVDEKREKIFHYGRFDIAVL 89
           D + ++QL+     + I  +A            +P L  +L      K+    R D   L
Sbjct: 773 DNVSVIQLAS-KERIAIFHLALFNPANSLQHLLSPTLKRILESPDIVKVGVAIRADCTRL 831

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKELLGINISKA--QQSSDW 140
           +   G+R   +       ++ + + N          L   ++E LG+ + K    +   W
Sbjct: 832 YKFLGIRTNNICEVSRLHKVVKHHLNPKLIDKRLVNLAQQVEEHLGLPLDKDPEIRCGGW 891

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           S   L+  Q+QY A+D      L      K
Sbjct: 892 SKK-LNYRQVQYVATDPYAALQLFHVLEAK 920


>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
 gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
          Length = 934

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 530 VYREIEMPLVPVLSRIERTG 549


>gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236]
 gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236]
          Length = 906

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 323 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 382

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 383 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 441

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 442 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 501

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 502 VYREIEMPLVPVLSRIERTG 521


>gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
 gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
          Length = 937

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 19/190 (10%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            I   E +     A  +     + DTET  L     R+  V ++   G    I       
Sbjct: 340 DIIFTESEFATWLARLQAATEFSFDTETTSLDVMEARIVGVSVATEPGVAAYIPCGHDYM 399

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
            AP           L  +L DE + KI    ++D +VL    G+ +R + + T + S + 
Sbjct: 400 GAPEQLSLEWVLNQLKPLLEDEHKIKIGQNIKYDRSVLLNY-GITLRGIKYDTMLESYVW 458

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALR 164
            +  ++H + D  +  L       ++ +      L+  QL       YAA D      L 
Sbjct: 459 NSVASRHNMDDLAQTYLDYKTVTFEELAGKGVKQLTFNQLKIEDAGHYAAEDADITLRLH 518

Query: 165 LQFTEKLQRL 174
             F  +LQ+ 
Sbjct: 519 QFFWPQLQQQ 528


>gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
 gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
          Length = 945

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 31/179 (17%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-----SPGDGTVDIIRI-------AAGQK 61
           E        +A DTET  L PR     +V L     +  D  V  + +          ++
Sbjct: 349 ETCTDANHPVAWDTETTALNPRDA--ALVGLGCCWGAAPD-QVAYLPLGHKEGQNLPLEE 405

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120
               L  +L  ++  K+    +FD  ++    G+++R V F T +AS +       H LK
Sbjct: 406 TLAALRPILEGDRYPKVLQNAKFD-RLVLRFQGIQLRGVVFDTMLASYVINPEA-SHNLK 463

Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKL 171
           D  +  L +        + K Q  +D     LS   + QY   DV   + L+ +    L
Sbjct: 464 DLCQRYLPLQAQSYRTLVGKDQTLAD-----LSPATVAQYCGLDVHTTYLLKEKLEADL 517


>gi|125546566|gb|EAY92705.1| hypothetical protein OsI_14456 [Oryza sativa Indica Group]
          Length = 231

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           + ++QL   D    + +I         L   L D +   +    R D A L   +G+ V 
Sbjct: 72  VAVLQLCV-DRRCLVFQILHADYVPDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVP 130

Query: 99  PVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYA 153
                +  +   L R    + GL+  ++E++G+ + K    + S W   +LS++Q +YA
Sbjct: 131 RAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYA 189


>gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71]
 gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71]
          Length = 909

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 22/181 (12%)

Query: 13  AECAARYVDA--IAVDTETLGLMPRR-DRLCIVQLSPGDGTVDIIRIAAGQKNAPN---- 65
            +  +R  +A   A DTET  L     D + +   +   G    + +A     AP     
Sbjct: 321 DDWLSRLSEAPLFAFDTETTSLNYMEADIVGL-SFAVERGEAAYVPLAHSYPGAPAQLDR 379

Query: 66  ------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHG 118
                 L  +L D  + K+    ++D +VL     + ++ + F T + S +  +   +H 
Sbjct: 380 DAILAALKPLLEDPAKPKLGQNLKYDASVLARY-DIHMQGIAFDTMLESYVLDSTGTRHD 438

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           +     + LG + +  +  +   A  ++ +Q+       YAA D     AL      KLQ
Sbjct: 439 MDSLALKYLGRSTTHFEDVAGKGAKQITFDQVGIEQAGPYAAEDAEVTLALHETLWPKLQ 498

Query: 173 R 173
            
Sbjct: 499 E 499


>gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)]
 gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)]
          Length = 906

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 323 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVIAQL 382

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 383 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 441

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 442 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 501

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 502 VYREIEMPLVPVLSRIERTG 521


>gi|169794444|ref|YP_001712237.1| putative 3'-5' exonuclease [Acinetobacter baumannii AYE]
 gi|215482033|ref|YP_002324215.1| 3'-5' exonuclease family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301345646|ref|ZP_07226387.1| 3'-5' exonuclease family protein [Acinetobacter baumannii AB056]
 gi|301512345|ref|ZP_07237582.1| 3'-5' exonuclease family protein [Acinetobacter baumannii AB058]
 gi|301596170|ref|ZP_07241178.1| 3'-5' exonuclease family protein [Acinetobacter baumannii AB059]
 gi|332851917|ref|ZP_08433803.1| 3'-5' exonuclease [Acinetobacter baumannii 6013150]
 gi|332868835|ref|ZP_08438428.1| 3'-5' exonuclease [Acinetobacter baumannii 6013113]
 gi|332874252|ref|ZP_08442172.1| 3'-5' exonuclease [Acinetobacter baumannii 6014059]
 gi|169147371|emb|CAM85232.1| conserved hypothetical protein; putative 3'-5' exonuclease
           [Acinetobacter baumannii AYE]
 gi|213988888|gb|ACJ59187.1| 3'-5' exonuclease family protein [Acinetobacter baumannii
           AB307-0294]
 gi|323519683|gb|ADX94064.1| putative 3'-5' exonuclease [Acinetobacter baumannii TCDC-AB0715]
 gi|332729610|gb|EGJ60947.1| 3'-5' exonuclease [Acinetobacter baumannii 6013150]
 gi|332733088|gb|EGJ64287.1| 3'-5' exonuclease [Acinetobacter baumannii 6013113]
 gi|332737536|gb|EGJ68443.1| 3'-5' exonuclease [Acinetobacter baumannii 6014059]
          Length = 213

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+                    L  +L + K+ K+    + D   +F+  G+ +   
Sbjct: 70  LIQLATEHKAYL---FHVNLSTLKFLQPILSNPKQIKVGFGLKND-KHIFHKKGIELESC 125

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
               +A   +   +  Q G++  +  LLG  ++K++   +S+W+   L+ +Q+ 
Sbjct: 126 VD--LAKGFSHFGFKQQMGVQKAVALLLGQYLAKSKKVGTSNWARKPLTSQQIS 177


>gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 934

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVIAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 530 VYREIEMPLVPVLSRIERTG 549


>gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21]
 gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21]
          Length = 906

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 323 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVIAQL 382

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 383 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 441

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 442 FLQHSCISFEQVAGKGKNQLTFNQIALQEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 501

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 502 VYREIEMPLVPVLSRIERTG 521


>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
 gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
          Length = 934

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 530 VYREIEMPLVPVLSRIERTG 549


>gi|296214138|ref|XP_002753640.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
           [Callithrix jacchus]
          Length = 572

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN--LVGMLVDEKREKIFHYGR--FDIAVLFYTF 93
           +LC +Q++  +  V +  I      A N  L  +L D++  KI H  R   D   L + +
Sbjct: 173 KLCWLQVAT-NCRVYLFDIFLLGSRAFNNGLQMILEDKRILKIIHDCRWLSD--CLSHQY 229

Query: 94  GVRVRPVFCTKIA 106
           G+ +  VF T++A
Sbjct: 230 GILLNNVFDTQVA 242


>gi|228904297|ref|ZP_04068392.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|228930754|ref|ZP_04093731.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228828844|gb|EEM74504.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228855382|gb|EEM99946.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 1097

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 38/210 (18%)

Query: 21  DAIAVDTETLGLM-PRRDR-------LCIVQLSPGDGTVDIIRI-------AAGQKNA-- 63
             +AVDTET GL    + R       + ++ ++  +G                G  +   
Sbjct: 210 KVLAVDTETTGLDITFKSRTGEHDECVGLI-ITGKEGESFYFPFKHTQFDNLCGGDDWYF 268

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR---LTRTYTNQHG 118
               +  +L  +    I H   FD  V++   G+ +  V  T  A     L   Y    G
Sbjct: 269 METYMKPLLEKKDI--IVHNASFDWKVIYIY-GIVLNVVIDT-FAVFSLTLNAKYQTPVG 324

Query: 119 LKDNLKELLG---INISKAQQSSDWSA-----DDLSDEQLQ-YAASDVVHLHALRLQFTE 169
           LK  +  LL    + +    ++ D+ +      DL  E ++ YA +D  +  AL     E
Sbjct: 325 LKHLISLLLKRDSLELDDLCKNGDFGSIDQNFADLPKELVRLYACADADNTLALYHYMLE 384

Query: 170 --KLQRLGRSDLATSCCNFLMDRAELDLLG 197
              L+  G + +      F       +  G
Sbjct: 385 TNMLENWGATKVVQFESIFACAIGYSEFHG 414


>gi|116793719|gb|ABK26855.1| unknown [Picea sitchensis]
          Length = 204

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 19  YVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDE 73
             + +  D E     P   R       ++QL   +G   II++         LV  L D 
Sbjct: 46  GQEIVGFDME---WRPSFQRGWENDTALLQLCTDNG-CLIIQMLFLDFIPEALVSFLKDP 101

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI------ASRLTRTYTNQHGLKDNLKELL 127
             + +      D A L    G+        ++      A +L R    Q GLK   KE+L
Sbjct: 102 GVKLVGVGIERDAAKLMNDHGLECGG----QVELGALAAEKLERRELKQAGLKGLAKEVL 157

Query: 128 GINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           G+ +SK  +   S+W+   L   Q+QYA  D     A+  +  E
Sbjct: 158 GLRLSKPKSISMSNWAWAILQHRQIQYACIDAFVSLAIGKKLME 201


>gi|157311100|ref|YP_001469095.1| gp096 [Lactococcus phage KSY1]
 gi|108861440|gb|ABG21639.1| gp096 [Lactococcus phage KSY1]
          Length = 895

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 23/154 (14%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
           A D ET GL    +++ +VQ    D               P +  +   +KR   +H G+
Sbjct: 20  AADIETTGLDYFTEKITLVQYGTDDEH------QQWYTEEPTIEDIKELKKRTLFWHNGK 73

Query: 84  FDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGIN---------ISK 133
           FD   + Y FGV + P+   + +       Y++   LK    +LLG+          +SK
Sbjct: 74  FDTKFIAYHFGVML-PIHGDSMVLLH-ALGYSDSLSLKVAAAKLLGVENWDIEHDLKLSK 131

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                D  A  L  +  +Y   DV + +AL    
Sbjct: 132 G---PDEEASKL--KFFEYGLKDVKYTYALMRLL 160


>gi|146173426|ref|XP_001018834.2| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|146144882|gb|EAR98589.2| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 634

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
             R    I  D            +C +++S  D    II   + +     L  + +D++ 
Sbjct: 107 LLRNAGVICWDVHFNTYRSFYGFVCFLEISTIDQD-YIIDCLSLRNEIHRLKEIFLDKQI 165

Query: 76  EKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS-- 132
            KI    +  I  L+  FG+  +               Y  +  L   +  L G  ++  
Sbjct: 166 VKITLDLQEKINWLYRDFGILNIVNSID-------LSLYLKELNLPSIISYLCGTLLNYP 218

Query: 133 --KAQQSSDWSADDLSDEQLQY 152
             K  Q+ D+    LS  ++ Y
Sbjct: 219 FQKILQNFDYRKRPLSLNEINY 240


>gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 921

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 67/201 (33%), Gaps = 24/201 (11%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---------- 68
               +AVDTET  L   + +L  V LS   G    I    G  +  +             
Sbjct: 337 QKGQVAVDTETDNLDATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQMDLLLLVK 396

Query: 69  ----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L D    KI    ++D+ VL    G+ V+P   T + S       + HG+ +   
Sbjct: 397 KLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELSL 455

Query: 125 ELLGIN-IS-K-----AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
                  IS K      + +  ++   +     +YAA D      L      +L   G +
Sbjct: 456 LYFDHQPISFKSVCGTGKSAITFNHVPIPAA-TRYAAEDADITFRLWALLKPRLSSDGAT 514

Query: 178 DLATSCCNFL-MDRAELDLLG 197
            +       L    A ++  G
Sbjct: 515 RIYEEVDRPLPPVIARMEQAG 535


>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
          Length = 930

 Score = 55.8 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 13/137 (9%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E  + A  A  ++V   A DTET  L      L  +  +   G    I +A    +AP
Sbjct: 335 LDEAALEALIARLQHVGCFAFDTETDSLDVLSANLVGISCADAPGQAYYIPLAHDYLDAP 394

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      L  +L DEK  K+    ++DI V+    G+ +R V F T + S +  + 
Sbjct: 395 AQLDREWVLARLQPLLEDEKVAKVGQNLKYDIGVMARH-GIILRGVAFDTMLESYVLNSV 453

Query: 114 TNQHGLKDNLKELLGIN 130
             +H +       L   
Sbjct: 454 AGRHDMDSLAARHLDHK 470


>gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
 gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
          Length = 890

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 307 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 366

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 367 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 425

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 426 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 485

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 486 VYREIEMPLVPVLSRIERTG 505


>gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 921

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 67/201 (33%), Gaps = 24/201 (11%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG---------- 68
               +AVDTET  L   + +L  V LS   G    I    G  +  +             
Sbjct: 337 QKGQVAVDTETDNLDATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQMDLLLLVK 396

Query: 69  ----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
               +L D    KI    ++D+ VL    G+ V+P   T + S       + HG+ +   
Sbjct: 397 KLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELSL 455

Query: 125 ELLGIN-IS-K-----AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
                  IS K      + +  ++   +     +YAA D      L      +L   G +
Sbjct: 456 LYFDHQPISFKSVCGTGKSAITFNHVPIPAA-TRYAAEDADITFRLWALLKPRLSSDGAT 514

Query: 178 DLATSCCNFL-MDRAELDLLG 197
            +       L    A ++  G
Sbjct: 515 RIYEEVDRPLPPVIARMEQAG 535


>gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
 gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
          Length = 918

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 17/163 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---AAGQKNAPNLVGMLVDE 73
            +    I++DTET    P R  L  +     +     + +    A     P ++  L D 
Sbjct: 339 LKEAKQISLDTETDSPEPMRANLVGISFCMDEKKAYYLPLGHQLAVNLPLPEVLRHLEDA 398

Query: 74  KREKIF--HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            + K+   H  +FD+ VL         P+F T +A+ +    T  + L+      L   +
Sbjct: 399 LKGKLLLGHNLKFDLIVLARNGLELDNPLFDTMLAAYILDPGTLNYSLETCALNELNYKM 458

Query: 132 ---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
                     K Q + D   +   ++   Y+A D   ++ L  
Sbjct: 459 IPISDLIGKGKNQSTFD-LVEP--EKACIYSAEDAWAVYKLYP 498


>gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
 gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
          Length = 851

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 268 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 327

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 328 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 386

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 387 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 446

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 447 VYREIEMPLVPVLSRIERTG 466


>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
 gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus bovienii SS-2004]
          Length = 932

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 24/178 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQK--NAPN----- 65
            +   A + DTET GL      + +V     ++ G+  V+   +  G    +AP      
Sbjct: 346 LKQAPAFSFDTETDGLDTLT--VNLVGMSFAIAVGESEVEAAYLPLGHDYLDAPEQLDLH 403

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L  +L D    KI    +FD  VL          VF T + S +  + + +H + 
Sbjct: 404 EVLAALKPLLEDANLPKIGQNLKFDRGVLARYDVALNGIVFDTMLESYVLNSVSGRHDMD 463

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172
                 LG   +  ++ +      L+  Q+      +YAA D      L      ++ 
Sbjct: 464 SLADRHLGYKTTTFEEIAGKGKKQLTFNQIPLEEAAKYAAEDADVTLRLHQVMYPQID 521


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 33/192 (17%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS------PGDGTVDIIRIAAGQKNAP 64
           +P          +  DTET  L     ++  V L+       G   +     +  ++   
Sbjct: 351 LPELL---KQKEVCFDTETTSLDEMEAQI--VGLAFSWEVHKGYYILFPEDFSLAKEWLS 405

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNL 123
            L      E   KI    ++D+ +L     + VR  +F T IA  L      +H +    
Sbjct: 406 LLKPFFEAENILKIGQNLKYDLKILANY-DIEVRGQLFDTMIAHYLLNP-DMRHNMDLLA 463

Query: 124 KELLGIN-------ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEK 170
           +  L          I K           LS      + Q +YA  D      L+  F   
Sbjct: 464 EAYLSYAPVAIETLIGKK------GKGQLSMCSVPAELQKEYAVEDTDVTLQLKHTFLPL 517

Query: 171 LQRLGRSDLATS 182
           L++   + L T 
Sbjct: 518 LEKDKMTPLFTE 529


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A D ET  L      +  +  +   G    + +A    +AP+          L
Sbjct: 345 LKNSEVFAFDLETDALDTLSANIVGISFAVAPGEAAYLPVAHDYLDAPDQLDRAAVLAQL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE   K+    ++D  VL     + +  + F   + S +  +   +H +      
Sbjct: 405 KPLLEDENAWKVGQNLKYDRGVLKNY-DIELAGIKFDAMLESYILNSVVGKHDMDSLAAR 463

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            L       Q+ +    + L+  Q+       YAA D      L L+   +L++ 
Sbjct: 464 WLNHKTVTFQEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKE 518


>gi|195443106|ref|XP_002069280.1| GK21051 [Drosophila willistoni]
 gi|194165365|gb|EDW80266.1| GK21051 [Drosophila willistoni]
          Length = 587

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           L D     LG  ++K+ Q S+W+   L  EQ+ YAA D   L  +     ++
Sbjct: 502 LTDLTLLCLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLVYNILIDR 553


>gi|154275864|ref|XP_001538777.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413850|gb|EDN09215.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 808

 Score = 55.4 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQK-------NAPNLVGMLVDEKREKIFHYGRFDIAVL 89
           D + ++QL+     + I  +A            +P L  +L      K+    R D   L
Sbjct: 618 DNVSVIQLAS-KERIAIFHLALFNPANSLQHLLSPTLKRILESPDIVKVGVAIRADCTRL 676

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKELLGINISKAQ--QSSDW 140
           +   G+R   +       ++ + + N          L   ++E LG+ + K    +   W
Sbjct: 677 YKYLGIRTDNICEVSRLHKVVKHHLNPKLIDKRLVNLAQQVEEHLGLPLDKDPEIRCGGW 736

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           S   L+  Q+QY A+D      L      K
Sbjct: 737 SKK-LNYRQVQYVATDPYAALQLFHVLEAK 765


>gi|75759443|ref|ZP_00739536.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74493056|gb|EAO56179.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 1015

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 73/210 (34%), Gaps = 38/210 (18%)

Query: 21  DAIAVDTETLGLM-PRRDR-------LCIVQLSPGDGTVDIIRI-------AAGQKNA-- 63
             +AVDTET GL    + R       + ++ ++  +G                G  +   
Sbjct: 128 KVLAVDTETTGLDITFKSRTGEHDECVGLI-ITGKEGESFYFPFKHTQFDNLCGGDDWYF 186

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR---LTRTYTNQHG 118
               +  +L  +    I H   FD  V++   G+ +  V  T  A     L   Y    G
Sbjct: 187 METYMKPLLEKKDI--IVHNASFDWKVIYIY-GIVLNVVIDT-FAVFSLTLNAKYQTPVG 242

Query: 119 LKDNLKELLG---INISKAQQSSDWSA-----DDLSDEQLQ-YAASDVVHLHALRLQFTE 169
           LK  +  LL    + +    ++ D+ +      DL  E ++ YA +D  +  AL     E
Sbjct: 243 LKHLISLLLKRDSLELDDLCKNGDFGSIDQNFADLPKELVRLYACADADNTLALYHYMLE 302

Query: 170 --KLQRLGRSDLATSCCNFLMDRAELDLLG 197
              L+  G + +      F       +  G
Sbjct: 303 TNMLENWGATKVVQFESIFACAIGYSEFHG 332


>gi|123498604|ref|XP_001327439.1| Zinc finger, C2H2 type family protein [Trichomonas vaginalis G3]
 gi|121910368|gb|EAY15216.1| Zinc finger, C2H2 type family protein [Trichomonas vaginalis G3]
          Length = 589

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 100 VFCT-----KIASRLTRTYTNQHGLKDNLKELLG--INI--SKAQQSSDWSADDLSDEQL 150
           +F T      +       Y      +  ++EL+G    +   K    SDW+   L+ +Q 
Sbjct: 129 MFDTTFGIQDVQMTYLEPYQISINFQLMVEELIGSPKALFKDKNISRSDWTVRPLTIKQC 188

Query: 151 QYAASDVVHLHALRLQFTE 169
            YA  DV  L+    +  E
Sbjct: 189 LYAVFDVYALYLCYSKLLE 207


>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
 gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
          Length = 957

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 43/197 (21%)

Query: 19  YVDAIAVDTETLGLMPRRDRL------------CIV------QLS------------PGD 48
               +AVDTET  L      L            C +      Q++               
Sbjct: 354 QAKLVAVDTETDSLDSMSANLVGISFGLANGEACYIPLTHKEQVTLEPQQSDLFAEPTEA 413

Query: 49  GTVDIIRIAAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103
            T+    +A  Q N       L  +L +   +KI    ++D+ +     GV+V  V F T
Sbjct: 414 ETITSFELAKNQLNLTACVTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVEGVAFDT 472

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157
            + S    + T +H + +  +  LG    + ++ +    + L+ +++      QYAA D 
Sbjct: 473 MLESYTLNS-TGRHNMDELAERYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASQYAAEDA 531

Query: 158 VHLHALRLQFTEKLQRL 174
                L      +L + 
Sbjct: 532 DVTMKLHQVLAPELDKA 548


>gi|290490726|dbj|BAI79323.1| WRN helicase [Gallus gallus]
          Length = 1498

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 24/147 (16%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF------H---YGRFD-- 85
            ++ ++QL   +    +  I++       L  +L DE  +K+       H    G F+  
Sbjct: 105 AKIALIQLCVTEEKCYLFHISSMSGFPKGLKRLLEDETIKKVGVGIEGDHWKLMGDFEVK 164

Query: 86  IAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSAD 143
           +        V    + C ++             L   +K L G  +   K+ +  +W   
Sbjct: 165 LKSFVELADVANEKLKCKEV-----------WSLNGLVKHLFGKQLLKDKSIRCGNWEKF 213

Query: 144 DLSDEQLQYAASDVVHLHALRLQFTEK 170
            L +E+  YAA+D      +  +    
Sbjct: 214 PLDEERKLYAATDAYAGFIIYQKLKNM 240


>gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2]
 gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2]
          Length = 886

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 303 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 362

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 363 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 421

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 422 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 481

Query: 180 A--TSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 482 VYREIEMPLVPVLSRIERTG 501


>gi|328874971|gb|EGG23336.1| hypothetical protein DFA_05468 [Dictyostelium fasciculatum]
          Length = 455

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 10/171 (5%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPR----RDRLCIVQLSPGDGTVDIIRIAAGQ 60
           ++ +G +P +        + +D E   L         ++ ++QLS G+ T  + RI   +
Sbjct: 278 KLLDGKMPWDVKVSDAVVLGMDCEWPALRKFLTKEDPKISLIQLSNGEYTA-LFRICKFE 336

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           +    LV +L      K+ H    D   L     + +  V    +A        N   + 
Sbjct: 337 EIPDALVQLLTSRSILKVGHGLSKDANRLNKEQKICMDGVDD--LAYHPVTYRCNPDSIN 394

Query: 121 DNLKELLGINISKAQQ--SSDWSA-DDLSDEQLQYAASDVVHLHALRLQFT 168
           D +   L  NI++      S+W    DL+ EQ+  AA        L  +  
Sbjct: 395 DMVAMFLNTNITRRASVIRSNWGTSQDLTHEQILSAAQRSHFSRQLYFKLQ 445


>gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 976

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 44/208 (21%)

Query: 21  DAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIA-------------AGQKN 62
           + +A+DTET  L P    L     C+     G+   D+  I              A +  
Sbjct: 381 EIVALDTETNSLNPLDAELVGIGFCL-----GEEINDLFYIPLSHQSQKKEMNQLAIEDV 435

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121
             NL   +   ++EK     +FD  + +   G+ +R V F T +A  +      +HGL +
Sbjct: 436 FFNLRSWIESPEKEKTLQNCKFDRQIFYNH-GLNLRGVTFDTLLADYILNNQ-EKHGLSE 493

Query: 122 NLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                 G         +  +K     D     ++D    Y   DV+    +   F E+  
Sbjct: 494 ISFREFGFKPPTFKETVGKNKDFSFVD-----INDA-STYCGYDVLLTFKIAKIFKERFN 547

Query: 173 RLGR--SDLATS-CCNFLMDRAELDLLG 197
              +  + L            +E+++ G
Sbjct: 548 NENKDLTKLFKEIELPLEPVLSEMEMNG 575


>gi|307202739|gb|EFN82030.1| Werner syndrome ATP-dependent helicase [Harpegnathos saltator]
          Length = 200

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 11/145 (7%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +  D E           +  + Q+   D    ++ I + +K     +  L   K + + 
Sbjct: 50  PVGFDLEWPFN-FQTGSGKTALAQICLEDSVSYLLHIYSLKKLPAAFIEFLCHPKVKLVG 108

Query: 80  HYGRFDIAVLFYTFGVRVR------PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              + D+  L   F                   +      + +  L+     LL   I K
Sbjct: 109 VNIKNDVWKLGRDFKEFPAQKVVENSCIDCGTFANQVLKRSCRWSLEKLTAYLLKKRIDK 168

Query: 134 --AQQSSDWSADDLSDEQLQYAASD 156
               + S W    LSD Q  YAASD
Sbjct: 169 NPEVRKSKWHVQPLSDAQKIYAASD 193


>gi|242058231|ref|XP_002458261.1| hypothetical protein SORBIDRAFT_03g030160 [Sorghum bicolor]
 gi|241930236|gb|EES03381.1| hypothetical protein SORBIDRAFT_03g030160 [Sorghum bicolor]
          Length = 226

 Score = 55.4 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 9/153 (5%)

Query: 23  IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + +DTE          R++R+ ++QL  G     + +I         L   L       +
Sbjct: 49  VGLDTEWRIVHDEDGRRKNRMAVLQLCVG-HRCLVYQIFHADYVPDALRDFLACPDHRFL 107

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCT-KIASR-LTRTYTNQHGLKDNLKELLGINISK--A 134
                 D+  L    G+ V        +A+  L R       LK   +E++G+ I K  +
Sbjct: 108 GVAVDGDVKRLSEDCGLVVADAADLRHVAAEVLARPELRTASLKTLTREVMGVLIDKPKS 167

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              S W A  LS +Q+QYA  D    + +    
Sbjct: 168 VTMSKWDARRLSVKQVQYACVDAFVSYEIGRLL 200


>gi|17509615|ref|NP_493360.1| hypothetical protein W05H12.2 [Caenorhabditis elegans]
 gi|3873839|emb|CAB02702.1| C. elegans protein W05H12.2, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|3880545|emb|CAB04921.1| C. elegans protein W05H12.2, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 329

 Score = 55.0 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 62/184 (33%), Gaps = 47/184 (25%)

Query: 3   TIRVHEGDIPAECAARYVD-----AIAVDTETLGL-MPRRDRLCIVQLSPGDGTVDIIRI 56
           TIR+ E    A       +      I  DTE+    +  RDRL ++     D    I+  
Sbjct: 159 TIRITENFFEANRFLAPFNRQRTLPIFFDTESAHFPVRHRDRLALLTFCDIDTQ-TIVLW 217

Query: 57  AAGQKNAPNLVGMLVDEKREKIFH-----------YGRFDIAVLF---YTFGVRVRPVFC 102
              + N P L  +          H           +  F +  L        ++ R +  
Sbjct: 218 RIHKTNEPELRRI----------HHFIAQLGQTRTFAVFGMETLLPPDRVLNLQPRSM-- 265

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
                           LK    E+ GI ++K +  SDW  + L  +Q+ YA  D V LH 
Sbjct: 266 --------------PSLKQLALEVTGIILNKEESLSDWVREVLRIDQIHYACMDAVILHH 311

Query: 163 LRLQ 166
           +  +
Sbjct: 312 IYDE 315


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 64/188 (34%), Gaps = 20/188 (10%)

Query: 6   VHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
           V + D       R       + DTET  L   +  +  V  +        + +      A
Sbjct: 304 VLKQDQLDRWLVRLAQFELFSFDTETTSLNYMQAEIVGVSFAVEYNKAAYVPLGHDYPGA 363

Query: 64  PN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRT 112
           P           L  +L D  + K+  + ++D  VL    G+ ++ +   T +AS +  +
Sbjct: 364 PEQLDRDAVLNALKPLLEDTGKAKVGQHLKYDKNVLARY-GIELKGIAHDTMLASYVLNS 422

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQ 166
              +H +    +  L  +    +  +   A  L+  Q+       YAA D      L  +
Sbjct: 423 VAGRHDMDSLAERYLDRHTVHYEDIAGKGAKQLTFNQIDLEQAAPYAAEDADITLQLHRE 482

Query: 167 FTEKLQRL 174
              KLQ  
Sbjct: 483 LWPKLQTE 490


>gi|116198139|ref|XP_001224881.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51]
 gi|88178504|gb|EAQ85972.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51]
          Length = 736

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 21/172 (12%)

Query: 21  DAIAVDTETL----GLMPRRDRLCIVQLSPGD--GTVDIIRIAAGQKNA-PNLVGMLVDE 73
             +  D E +         R  + ++QL+     G   +       + A P L   + + 
Sbjct: 464 KVVGFDLEWMAYANKYASARQNVSLIQLASPTRIGLFHVAIFPKDDEFATPTLKEFMQNP 523

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLK 124
              K+    + D   L     +  R  F      RL +   +            L   + 
Sbjct: 524 AITKVGVSIKGDCTRLSNYLQIETRGQFELSHLYRLVKYSESGEHKSINKKLVSLSTQVN 583

Query: 125 ELLGINISKAQQSS-DWSADDLSDEQLQYAASDV---VHLHALRLQFTEKLQ 172
           E LG+ + K    + DW+   L   Q+ Y++SDV   VHL+A+     +KL 
Sbjct: 584 EYLGLPMYKGDVRTGDWTKR-LDMPQIIYSSSDVYAGVHLYAILNHRRQKLD 634


>gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
          Length = 958

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 12/187 (6%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA--PNLVGMLVDEKREKI 78
           +    DTET G     DR+  + L+        I             +  +  +++  KI
Sbjct: 387 EEFCFDTETTGFDIFNDRIVGMSLAVNPFEAWYIPFKEENTAEYTEIVRPLFENDRIAKI 446

Query: 79  FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
               +FD+ VL    G+ +R   + T I   L    + +H +    ++ L     + +  
Sbjct: 447 GQNIKFDLMVL-RQLGLEIRGRKYDTMILHYLLDPES-RHNMNALAEKYLNYKPIEIETL 504

Query: 138 SDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA-TSCCNFLMDR 190
               +  L+      +   +YAA D      L+     +++ LG   L        +   
Sbjct: 505 IGKGSKQLTMDLVNVERVKEYAAEDADVTLRLKHALYPQIEELGLQHLYFEIEEPMIAVL 564

Query: 191 AELDLLG 197
           A++++ G
Sbjct: 565 ADIEMAG 571


>gi|194870203|ref|XP_001972607.1| GG15614 [Drosophila erecta]
 gi|190654390|gb|EDV51633.1| GG15614 [Drosophila erecta]
          Length = 235

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           I  I A     P L  +L  ++  K+ HY       L +   + +  +F T +A  L R 
Sbjct: 37  IYDIKALGSIFPELAKILEADQPRKVVHYSHRIADHLLHRQRISLGGIFDTFVALCLKRH 96

Query: 113 YTNQHGLKDNLKELLGINISKA---------QQSSDWSADDLSDEQLQYAASDVVHLHAL 163
                 L + +  +  +++ K          +   +++A  L+  Q++Y A  V   H +
Sbjct: 97  ERFPFSLSEAISFVFRLSMDKILCDEVTGACESRRNFTARPLTRSQIRYMAKMVHLQHIM 156

Query: 164 RLQFT 168
             +  
Sbjct: 157 HHRLN 161


>gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
 gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
          Length = 898

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               +  A D ET  L      +  +  +        + +A   +              L
Sbjct: 316 LAGAEVFAFDLETTSLNYMDAEIVGLSFAVEPARAAYVPVAHIGQGVSPQLERGHVLEQL 375

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D +R K+    ++D++VL +   + +R V F T + S +  +   +H +     +
Sbjct: 376 RPLLEDPRRAKLGQNLKYDMSVLAHY-DIALRGVRFDTMLESYILDSTATRHDMDSLALK 434

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD- 178
            LG    K +  +   A  L+ +Q+      +YAA D      L      KL++L   + 
Sbjct: 435 YLGHRTIKFEDVAGKGAKQLTFDQVAIERATEYAAEDADIALRLHRVLYPKLRQLPGPER 494

Query: 179 -LATSCCNFLMDRAELDLLG 197
                    L   + ++  G
Sbjct: 495 VFHAIEMPLLPVLSRMERTG 514


>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 923

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 24/181 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +A A DTET  L      L  V  +  +G    + +A    +AP           L
Sbjct: 340 LKSAEAFAFDTETDSLDYMVANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVLAQL 399

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  + KI    ++D +V+    G+ ++ + + T + S +  +   +H +      
Sbjct: 400 KPLLEDPNQAKIGQNLKYDASVIARY-GIEMQGIKYDTMLESYVYNSVVGRHDMDSLALR 458

Query: 126 LL---GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGR 176
            L    I+  +           L+  Q+       YAA D      L      K+    +
Sbjct: 459 YLEHKNISFEEIAGK---GKGQLTFNQIDLEQAGPYAAEDADITLRLHNALYPKVSADEK 515

Query: 177 S 177
            
Sbjct: 516 L 516


>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
 gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
          Length = 903

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 23/128 (17%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122
           P L+ +L ++   K  H  ++ +  L  + G  ++ + F T +++ L        G+KD 
Sbjct: 385 PGLIALLTNKNITKTAHNAKY-LMNLLASAGQEIQGLDFDTMLSAHLLGE--KNLGIKDL 441

Query: 123 LKELLGINIS----------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKL 171
           + E  G+ I+          K +  S   A +LS+  QL    +D  +   L+  F  +L
Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFS---ASELSEAAQL---VAD--YTFRLKGLFAAQL 493

Query: 172 QRLGRSDL 179
                 DL
Sbjct: 494 AETNLIDL 501


>gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62]
 gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62]
          Length = 930

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 70/218 (32%), Gaps = 35/218 (16%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +       P
Sbjct: 336 TTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIAFQAGEAVYIPVGHSLTAVP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +     LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSGRWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQF-----TEKLQRLGRSDL--ATSCCNFLMDRAELD 194
             +       ++L+   + +L  A        +  ++D
Sbjct: 510 EARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQID 547


>gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
 gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
          Length = 985

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 81/237 (34%), Gaps = 41/237 (17%)

Query: 1   MTTIRVHEGDIPAEC-----AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDI 53
           M  I  +  ++             +  +A+DTET  L P +  L  + L  G+    +  
Sbjct: 360 MPQIISNNSELSVLIENLLQLDDPIQPVAIDTETTSLNPFQSELVGIGLCWGERPEQIAY 419

Query: 54  IRIAAGQKNAPN----------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           I +    ++                   L   L   +  K+    ++D  ++F  +G+ +
Sbjct: 420 IPLGHITEDLFEDQSSNLQLPLIDVIKGLSPWLGSSEHPKVLQNAKYD-RLIFLQYGIPL 478

Query: 98  RPVF-CTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQ 149
             V   T +A  L    T++H L+   K   G         + K +   + S   +S   
Sbjct: 479 EGVIMDTLLADYLCDV-THRHSLEAMAKREFGFTPTNFNEIVGKDETFKNVS---ISTAS 534

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGR--SDLATS-CCNFLMDRAELDLLGWENVDI 203
           L Y   DV     L       L+ +G+   +L            A+++  G   +DI
Sbjct: 535 L-YCGMDVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGI-RIDI 589


>gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
 gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
          Length = 932

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 51/162 (31%), Gaps = 19/162 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKI 78
           +  DTET  +      L  +           +          K          +E   K+
Sbjct: 362 VCFDTETTSVNALEAELVGISFCWSAHKGYYVPFPTDKAATTKLLETFRPFFENEHIGKV 421

Query: 79  FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130
               ++D+ VL     + VR  +F T IA  L      +H +    +  L          
Sbjct: 422 GQNLKYDLKVLQNY-NIEVRGALFDTMIAHYLLNP-DMRHNMDILSETYLNYTPIAIESL 479

Query: 131 ISKA-QQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170
           I K   Q S      +  +Q+ +YA  D      L+  F E+
Sbjct: 480 IGKGKAQRS---MRTVPLDQVKEYAVEDADVTWQLKNVFKEE 518


>gi|330927778|ref|XP_003301996.1| hypothetical protein PTT_13665 [Pyrenophora teres f. teres 0-1]
 gi|311322891|gb|EFQ89918.1| hypothetical protein PTT_13665 [Pyrenophora teres f. teres 0-1]
          Length = 314

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 25/136 (18%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ----HGLKD 121
           L  ML DEK  K+F   R D   LF  FGV ++ +   ++    TR  T      +GL  
Sbjct: 92  LKDMLEDEKIPKVFFDVRNDSDALFTHFGVALQGIEDVQLMESATRKTTASRKYLNGLAK 151

Query: 122 NLKELL------------------GINISKAQ---QSSDWSADDLSDEQLQYAASDVVHL 160
            ++  L                  G  + KA+       ++   + D+ + Y   DV HL
Sbjct: 152 CVENKLPTRHGGGGLAAWKLAKEKGERLFKAEHGGSYEVFNQRPIPDDIISYCVGDVRHL 211

Query: 161 HALRLQFTEKLQRLGR 176
             LR  F  +     R
Sbjct: 212 PELRDTFYRQQTHQWR 227


>gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1]
 gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1]
          Length = 922

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 15/193 (7%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------PNLVGM 69
            +    IA+DTET  +      +  + +S  +     I I   +KN+            +
Sbjct: 350 LKKASYIAIDTETTSINVYESNIIGISVSFKEFESYYIPIETKEKNSIGKDYIIQKFNEL 409

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
              + +  I    +FD  VL       +   F T IA+ +    T +  L     + L  
Sbjct: 410 FNSQPKL-IGQNYKFDYKVLKRHGFNVISAYFDTMIAAYVIDPNT-KVSLDFLAAKYLMH 467

Query: 130 NISKAQ----QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
              K +    Q S      L      YAA D      L     +KL+      L  +   
Sbjct: 468 KNIKYEEIVPQHSTLKDIPLEIA-SNYAAEDADITFRLFNILRKKLKEDNLESLMKNIEM 526

Query: 185 NFLMDRAELDLLG 197
            F     E++  G
Sbjct: 527 PFSNVIIEIEENG 539


>gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17]
 gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17]
          Length = 921

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 57/184 (30%), Gaps = 35/184 (19%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN------------ 62
             AR+   IA+DTET      +  L  V L         I +  G  +            
Sbjct: 332 ADARHQGFIAIDTETSSTDATQAELVGVSLCLSPNKACYIPLGHGGTDLLSEVPVQIPVA 391

Query: 63  --APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                +  +  D    KI    +FD+ VL    G+ + P   T + S       + HG+ 
Sbjct: 392 EALERIKALCEDPSVLKIGQNLKFDMIVLGER-GISIAPHDDTIVMSFDLDAGLHGHGMD 450

Query: 121 DNLKELLGIN--ISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQF 167
           +     L       K    +         +QL           +YAA D      L  +F
Sbjct: 451 ELAATHLSHTCLAFKEVVGT-------GKKQLGFHEVDLKTATRYAAEDADVTLRLWKRF 503

Query: 168 TEKL 171
             +L
Sbjct: 504 KARL 507


>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
 gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Cupriavidus metallidurans CH34]
          Length = 934

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 64/177 (36%), Gaps = 26/177 (14%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------------AP 64
              +A+DTET  L P   +L  + LS   G    I +A    +                 
Sbjct: 351 APIVAIDTETTSLDPMLAQLVGISLSVEPGAAAYIPVAHRGPDVAGLENHGQLSREYVLE 410

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNL 123
            + G L D  R K+  + ++D  V     GV +R +   T + S +  +Y N HG+    
Sbjct: 411 RMRGWLEDPARPKLGQHLKYDSHVFANH-GVALRGIAHDTMLESYVLASYRN-HGMDSLA 468

Query: 124 KELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           + LL +          K      +   DL     +YAA D      L  +   +L+ 
Sbjct: 469 ERLLSLKTITYEEVCGKGANQIGFDQIDLPRA-TEYAAEDADVTLRLHRKMQPQLEA 524


>gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
 gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
          Length = 938

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 30/200 (15%)

Query: 2   TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRL-CI---VQLSPGDGT-----V 51
            TI   +G +    A     +  + DTET  L   + R+  +   VQ + G         
Sbjct: 332 KTIYT-QGQLTQWIAKLEAAELFSFDTETTSLDYMQARIVGLSFAVQSNVGSDEQPIIEA 390

Query: 52  DIIRIAAGQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100
             + +A    +AP           L  +L  EK +K+    ++D +VL    G+ ++ + 
Sbjct: 391 AYLPLAHDYIDAPKQLDLTTTLEKLRPLLESEKYKKVGQNLKYDRSVLLNH-GIELKGIK 449

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAA 154
           F T + S +  + T +H +     + LG      ++ +      L   Q+       YAA
Sbjct: 450 FDTMLESYVLDS-TGRHDMDTLALKYLGHQCISFEEIAGKGKKQLPFNQISIIEAAPYAA 508

Query: 155 SDVVHLHALRLQFTEKLQRL 174
            D      L LQ  E+L   
Sbjct: 509 EDADVTLRLHLQLFEQLSAE 528


>gi|326918448|ref|XP_003205500.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
           helicase-like [Meleagris gallopavo]
          Length = 1569

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 14/142 (9%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYT 92
            ++ ++Q+        +  I++       L  +L DE  +K        I      L   
Sbjct: 176 AKIAVIQICVTKEKCYLFHISSMSGFPKGLKRLLEDETIKK----AGVGIEGDHWKLMSD 231

Query: 93  FGVRVRPVFCTKIA--SRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
           F V+++     ++A  +           L   +K L G  +   K+ +  +W    L +E
Sbjct: 232 FEVKLKSF--VELADVANEKLKCKEVWSLNGLVKHLFGKQLLKDKSIRCGNWEKFPLDEE 289

Query: 149 QLQYAASDVVHLHALRLQFTEK 170
           Q  YAA+D      +  +    
Sbjct: 290 QKLYAATDAYAGLIIYQKLKNM 311


>gi|302841203|ref|XP_002952147.1| hypothetical protein VOLCADRAFT_92754 [Volvox carteri f.
           nagariensis]
 gi|300262733|gb|EFJ46938.1| hypothetical protein VOLCADRAFT_92754 [Volvox carteri f.
           nagariensis]
          Length = 291

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG--RFDIAVLFYTFGVR 96
           + ++QLS     V +  +A G  ++      + D   E +   G    D      +FG++
Sbjct: 155 VALLQLSSAGLVVVVRTLACGLPDSFR-TRFMEDSDVELVV-AGWSSNDERKFEESFGLQ 212

Query: 97  V--RPVFCTKIASRLTRTYTNQHGLKDNLKELL----GINISKAQQSSDWSADDLSDEQL 150
                +   +  ++      ++ G++  ++ +L    G+  SK    SDWSA  L  EQL
Sbjct: 213 TFWCEITDIQKVAKACGH--SKTGVRALVQAVLEPSVGMPKSKKVSMSDWSAPSLQPEQL 270

Query: 151 QYAASDVVHLHALRLQFTEK 170
           +YA  D      +      +
Sbjct: 271 KYAILDAACTEHVFRCLEGR 290


>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
 gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
          Length = 934

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVIAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 470 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 529

Query: 180 ATSCCNF 186
                  
Sbjct: 530 VYREIEI 536


>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
 gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
          Length = 894

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 21/204 (10%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
               A DTET  L     R+  V  +   G    + +      AP+          L  +
Sbjct: 314 AKLFAFDTETTSLDYLEARIVGVSFAVKAGEAAYLPLNHDYPGAPDQLDFDAVMADLKPL 373

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D  + K+    ++D  VL     + ++ +   T + S +  +   +H +    K+ L 
Sbjct: 374 LEDPTKLKVGQNLKYDRHVLLNH-DINLQGIAHDTMLESYVLDSTATRHDMDSLAKKYLD 432

Query: 129 INISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDLA-- 180
            +    +  +      L+  Q+       YAA D      L      ++Q +        
Sbjct: 433 RDTIHFEDIAGKGKKQLTFNQIGLEEAAPYAAEDADITLQLHETLWPRIQAIPSLVKVYS 492

Query: 181 TSCCNFLMDRAELDLLGWENVDIF 204
                 L     L+  G  N+DI+
Sbjct: 493 ELEMPLLPVLNTLERNGV-NIDIW 515


>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
 gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
          Length = 930

 Score = 55.0 bits (132), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 347 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVIAQL 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 407 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 465

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + + 
Sbjct: 466 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQ 525

Query: 180 ATSCCNF 186
                  
Sbjct: 526 VYREIEI 532


>gi|308466384|ref|XP_003095446.1| hypothetical protein CRE_16334 [Caenorhabditis remanei]
 gi|308245291|gb|EFO89243.1| hypothetical protein CRE_16334 [Caenorhabditis remanei]
          Length = 275

 Score = 55.0 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
             LK+ +KE +G++I K +  SDW+ + L+ +Q+ YAA D + +H + 
Sbjct: 220 ISLKEAVKESVGLDIDKRETMSDWTKEILTKDQIVYAAMDALAVHYIW 267


>gi|239502011|ref|ZP_04661321.1| 3'-5' exonuclease [Acinetobacter baumannii AB900]
          Length = 213

 Score = 55.0 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+                    L  +L + K+ K+    + D   +F+  G+ +   
Sbjct: 70  LIQLATEHKAYL---FHVNSSTLKFLQPILSNPKQIKVGFGLKND-KHIFHKKGIELESC 125

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
               +A       +  Q G++  +  LLG  ++K++   +S+W+   L+ +Q+ 
Sbjct: 126 VD--LAKGFNHFGFKQQMGVQKAVALLLGQYLAKSKKVGTSNWARKPLTSQQIS 177


>gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710]
 gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579]
 gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149]
 gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
          Length = 929

 Score = 54.6 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E  + A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 335 TTEAQLAALLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAGEAIYIPVGHSLTAAP 394

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 395 EQIDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 453

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 454 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 508

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 509 EAHLRAQMDAK 519


>gi|158288714|ref|XP_565822.2| AGAP000530-PA [Anopheles gambiae str. PEST]
 gi|157018702|gb|EAL41175.2| AGAP000530-PA [Anopheles gambiae str. PEST]
          Length = 195

 Score = 54.6 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 14/147 (9%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            IA D E           R  ++QL        +++++  QK    L+ +L   +     
Sbjct: 48  PIAFDLEWPF-SFQTGPGRTALMQLCAAPDRCLLLQLSCLQKLPAALLQLLYHPRVL--L 104

Query: 80  H--YGRFDIAVLFYTFGVRVRPVF---CTKIASRLTRTYTNQ--HGLKDNLKELLGINI- 131
           H    + D   L   F      +    C ++     R +       L   ++++L   + 
Sbjct: 105 HGVNVKNDFRKLARDFPAVSADLLIERCVELGQWYNRLHGTTGIWSLARLVEQVLRQRVS 164

Query: 132 -SKAQQSSDWSADDLSDEQLQYAASDV 157
             K  + S W+   LSD+Q  YAA DV
Sbjct: 165 KDKRVRMSKWNVLPLSDDQKLYAAIDV 191


>gi|308460613|ref|XP_003092609.1| hypothetical protein CRE_19499 [Caenorhabditis remanei]
 gi|308253010|gb|EFO96962.1| hypothetical protein CRE_19499 [Caenorhabditis remanei]
          Length = 275

 Score = 54.6 bits (131), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
             LK+ +KE +G++I K +  SDW+ + L+ +Q+ YAA D + +H + 
Sbjct: 220 ISLKEAVKESVGLDIDKRETMSDWTKEILTKDQIVYAAMDALAVHYIW 267


>gi|184159750|ref|YP_001848089.1| 3'-5' exonuclease [Acinetobacter baumannii ACICU]
 gi|183211344|gb|ACC58742.1| 3'-5' exonuclease [Acinetobacter baumannii ACICU]
 gi|322509663|gb|ADX05117.1| Exonuclease putative [Acinetobacter baumannii 1656-2]
          Length = 213

 Score = 54.6 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+                    L  +L ++K+ K+    + D   +F+  G+ +   
Sbjct: 70  LIQLATEHKAYL---FHVNSSTLKFLQPILSNQKQIKVGFGLKND-KHIFHKKGIELESC 125

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
               +A   +   +  Q G++  +  LLG  ++K++   +S+W+   L+ +Q+ 
Sbjct: 126 ID--LAKGFSHFGFKQQMGVQKAVALLLGQYLAKSKKVGTSNWARKPLTSQQIS 177


>gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088]
 gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088]
          Length = 908

 Score = 54.6 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 24/178 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +      G    + +A     AP+          L
Sbjct: 326 LKEAGTFAFDTETNSLDYMEAELVGLSFCAEPGVACYVPVAHDYPGAPDQLSRDYVLNQL 385

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
             +L D + +K+  + ++D+ VL    G+ +R     T + S +  +   +H +    + 
Sbjct: 386 KDLLEDPQYQKVGQHLKYDMHVLANY-GIALRGFAGDTMLESYVLDSVGGRHDMDSLAER 444

Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
            LG          D     A  L+  Q+       YA  D      L    T +L   
Sbjct: 445 YLGRR---TISFEDVAGKGAKQLTFNQVSLEQAVPYACEDADITWQLYEYLTNQLTAT 499


>gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 922

 Score = 54.6 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 66/213 (30%), Gaps = 38/213 (17%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
                  A  TET G   +  +L  +  +        I +       P           L
Sbjct: 331 LDKAPLFAFVTETNGGDAQHSQLVGLSFAVAPYEAAYIPLTHSYMGVPEQLDRDTVLKAL 390

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTRTYTNQHG 118
             +L +  + K+  + +F+  +L           G+ V+ + F T + S +  +   +H 
Sbjct: 391 KPLLENPNKLKVGQHAKFETNILANCAIGGDQNNGILVQGIAFDTMLESYVLDSTATRHD 450

Query: 119 LKDNLKELLGINISKAQQSSDW------SADDLSDEQLQ------YAASDVVHLHALRLQ 166
           +     + LG      Q  +D+          L+ +Q+       YAA D      L   
Sbjct: 451 MDSLALKYLG------QSKTDFQDIAGKGVKQLTFDQISLELAGPYAAEDADVTFRLHQA 504

Query: 167 FTEKLQRLGRSDLATS--CCNFLMDRAELDLLG 197
             EKL          +      +   A ++  G
Sbjct: 505 LQEKLAATPSLGTVLNDIEMPLMPVLARIERQG 537


>gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
          Length = 903

 Score = 54.6 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
               +  A DTET  L   + ++  V  +   G    + +A    +AP           L
Sbjct: 321 LETAELFAFDTETTSLDYMQAQVVGVSFAVKTGEAAYLPLAHDYADAPQQLDRDETLKRL 380

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L   + +K+ H+ ++D  VL    G+ +  +   T + S +  +  ++H +    ++
Sbjct: 381 KPLLESARHKKLGHHLKYDRNVLLNH-GIELNGIEHDTMLESYVLNSTASRHDMDSLAQK 439

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKL-QRLGRSD 178
            L    +  ++ +   A  +   Q++      YAA D      L      +L    G+  
Sbjct: 440 YLDYRTTHYEEVAGKGAKQIPFSQVRIEDATPYAAEDADITLRLHEHLWPQLSAAEGQCR 499

Query: 179 LATS-CCNFLMDRAELDLLGWE 199
           +        +   + ++  G +
Sbjct: 500 VYREIEMPLVPVLSRMERTGVK 521


>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
 gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
          Length = 934

 Score = 54.6 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 18/195 (9%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI   E            +  A DTET  L      L  +  S  +G    + +A    +
Sbjct: 337 TIFTKEAFSAWLEKVNNAEVTAFDTETDSLDYMVANLIGLSFSVEEGEAAYVPVAHDYLD 396

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           AP           L   L DE + K+    ++D +VL     + ++ + F T + S +  
Sbjct: 397 APEQLDRDWVLAQLKPYLEDETKAKVGQNLKYDASVLARY-DIEMKGIKFDTMLESYVYN 455

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165
           +   +H +       L  N    ++ +      L+  Q+       YAA D      L  
Sbjct: 456 SVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQIALEEAAPYAAEDADITLRLHN 515

Query: 166 QFTEKLQRLGRSDLA 180
               KL    + +  
Sbjct: 516 VLHAKLVTDEKLNAV 530


>gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
 gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
          Length = 602

 Score = 54.6 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 32/183 (17%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
           +   R    + +D+ET GL       R   VQ    +    +I +  G       +  L 
Sbjct: 29  DFVDRNHQILGLDSETTGLDIYSKGFRCRTVQFGSPEE-GWVIPVERGAVFREAAIAALR 87

Query: 72  DEKREKIFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLT-----RTYTNQHGLKD 121
              R  + H   +D+ V     GV       + V  TKI + L      +     H L++
Sbjct: 88  AADRF-VLHNASYDLQVFDKCLGVPMEELWPK-VVDTKILAHLVDPRGRKEGGTGHSLEE 145

Query: 122 NLKELLG-----------INISKAQQSSD---WSADDL--SDEQLQYAASDVVHLHALRL 165
             +  L             +++K ++++    W    L     QL YA  D +    LR 
Sbjct: 146 LTRHYLDADVADTVKTLMTDLAKEEKTTKANVWKKVSLDNPRYQL-YAGMDPILACRLRQ 204

Query: 166 QFT 168
           + +
Sbjct: 205 KLS 207


>gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 782

 Score = 54.6 bits (131), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 35/208 (16%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               D  A DTET  L   + ++  V  +   G    +        AP           L
Sbjct: 193 LSAADLFAFDTETTSLDYMQAKIVGVSFAVNAGEAAYVPCGHDYMGAPEQLSLECVLAAL 252

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L +  + K+    ++D  VL     + ++ + + T + S +  +   +H +    + 
Sbjct: 253 KPLLENPNKHKVGQNLKYDKHVLLNH-DIDLQGIAYDTMLESYVCNSVATRHDMDSLARF 311

Query: 126 LL--------GINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171
            L         +   K        A  L+  Q+       YAA D      L       L
Sbjct: 312 YLDRSTIHFEDVAGKK-------GAKQLTFNQIDIEIAAPYAAEDADVTLQLHQAIWPTL 364

Query: 172 QRLGRSDLATS--CCNFLMDRAELDLLG 197
           Q+               L   + ++  G
Sbjct: 365 QQEPTLQHVLESIEIPLLPVISRIERNG 392


>gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
 gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
          Length = 745

 Score = 54.6 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 29/159 (18%)

Query: 44  LSPGDGTVD-IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-F 101
           L  G GT+  I  +   +         L D K  K++H   FD  VLF   G+ V     
Sbjct: 71  LGDGPGTMLWIDNLDDAKDLLQEFKPWLEDAKVMKVWHNYGFDRHVLFNE-GINVLGFGG 129

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGI------------NISKAQQSSDWSADDLS--- 146
            T   +RL+ T   ++ L+   ++LL               + K    +D +  D+    
Sbjct: 130 DTMHMARLSDTSRMKYSLESLTEDLLKQRKVPMKEIFGVPRLRKD--GTDGAIVDIPPVE 187

Query: 147 ---------DEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                    +  ++Y+A D    + L     ++L ++G 
Sbjct: 188 VMQRDPKFRESWIKYSAMDAKSTYNLYQHLKKELLKVGW 226


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
          Length = 968

 Score = 54.6 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 37/208 (17%)

Query: 5   RVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRL---CI-VQ--------------- 43
            + + DI  +    A      + DTET  L P + +L    + +Q               
Sbjct: 361 TLLDEDILKKWLLEAEEQGYFSFDTETTSLDPMQAKLVGFSLALQPNKAAYIPLEHIEGG 420

Query: 44  --LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
             L  G+  V  I     Q+    L  +L ++   KI    ++D  V+   + + +R   
Sbjct: 421 NDLFGGERIVGQI---ETQRALALLKPILENQAVLKIGQNMKYDWLVM-RQYDITIRSFD 476

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINIS--KAQQSSDWSADDLSDEQLQ------YA 153
            T + S +     + HG+    +  LG      K     D     +S  Q+       YA
Sbjct: 477 DTMLLSYVLDAGISTHGMDVLSERWLGHTPIAYKNLTC-D-GKKIVSFAQVDLKQATLYA 534

Query: 154 ASDVVHLHALRLQFTEKLQRLGRSDLAT 181
           A D      L      +L   G + +  
Sbjct: 535 AEDADITLRLWQVLKPQLVAQGMTKIYE 562


>gi|329903741|ref|ZP_08273602.1| 3'-5' exonuclease [Oxalobacteraceae bacterium IMCC9480]
 gi|327548221|gb|EGF32921.1| 3'-5' exonuclease [Oxalobacteraceae bacterium IMCC9480]
          Length = 184

 Score = 54.6 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 13/163 (7%)

Query: 13  AECAARYVDAIA-VDTETLGLMPRRDRLC----IVQLSPGDGTVDIIRIAAGQKNAPNLV 67
             CAA     +   DTE       +D++     IVQL+       + +++     A    
Sbjct: 24  EACAALLDSPVWGFDTE-SRPTFFKDQVSDGPHIVQLAT-QHRAWVFQLSDPDCVAQV-S 80

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL-TRTYTNQHGLKDNLKEL 126
            +L   K  K       D   +    GV    V    + S    R Y    G+K  +  L
Sbjct: 81  ALLASPKHVKAGFGLGDDTRRILSKLGVAPAAVLD--LNSVFRARGYRKDMGVKGAVAVL 138

Query: 127 LGINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                  SK   +S+W+   L+D Q+ YAA+D      +    
Sbjct: 139 FNRRFMKSKKAATSNWANPKLTDAQVLYAANDAYGAARVHDAL 181


>gi|323301144|gb|ADX35914.1| RE48478p [Drosophila melanogaster]
          Length = 353

 Score = 54.2 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 158 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 214

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 215 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 274

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +  +   +
Sbjct: 275 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 314


>gi|308191628|sp|B4I298|WRNXO_DROSE RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5'
           exonuclease
          Length = 354

 Score = 54.2 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 159 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 215

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 216 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 275

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +  +   +
Sbjct: 276 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 315


>gi|211938625|gb|ACJ13209.1| FI06575p [Drosophila melanogaster]
          Length = 361

 Score = 54.2 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 166 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 222

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 223 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 282

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +  +   +
Sbjct: 283 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 322


>gi|195569913|ref|XP_002102953.1| GD20178 [Drosophila simulans]
 gi|308191617|sp|B4QUF6|WRNXO_DROSI RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5'
           exonuclease
 gi|194198880|gb|EDX12456.1| GD20178 [Drosophila simulans]
          Length = 354

 Score = 54.2 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 159 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 215

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 216 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 275

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +  +   +
Sbjct: 276 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 315


>gi|195343302|ref|XP_002038237.1| GM18710 [Drosophila sechellia]
 gi|194133087|gb|EDW54655.1| GM18710 [Drosophila sechellia]
          Length = 347

 Score = 54.2 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 152 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 208

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 209 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 268

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +  +   +
Sbjct: 269 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 308


>gi|281362029|ref|NP_001163646.1| WRN exonuclease, isoform B [Drosophila melanogaster]
 gi|154243363|gb|ABS71854.1| 3'-5' exonuclease variant 1 [Drosophila melanogaster]
 gi|272477040|gb|ACZ94942.1| WRN exonuclease, isoform B [Drosophila melanogaster]
          Length = 354

 Score = 54.2 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 159 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 215

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 216 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 275

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +  +   +
Sbjct: 276 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 315


>gi|15291605|gb|AAK93071.1| GM14514p [Drosophila melanogaster]
          Length = 353

 Score = 54.2 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 158 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 214

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 215 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 274

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +  +   +
Sbjct: 275 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 314


>gi|28572965|ref|NP_650715.3| WRN exonuclease, isoform A [Drosophila melanogaster]
 gi|75026788|sp|Q9VE86|WRNXO_DROME RecName: Full=Werner Syndrome-like exonuclease; Short=DmWRNexo;
           AltName: Full=3'-5' exonuclease
 gi|28381346|gb|AAF55541.2| WRN exonuclease, isoform A [Drosophila melanogaster]
 gi|154243365|gb|ABS71855.1| 3'-5' exonuclease variant 2 [Drosophila melanogaster]
          Length = 353

 Score = 54.2 bits (130), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 158 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVR--L 214

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 215 HGVNIKNDFRKLARDFPEVTAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 274

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +  +   +
Sbjct: 275 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 314


>gi|298712143|emb|CBJ33021.1| expressed unknown protein [Ectocarpus siliculosus]
          Length = 649

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 14/169 (8%)

Query: 17  ARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAAGQK----NAPNLVGML 70
           A     +  D E   + P   R  + +VQLS  DG   +  +   ++        L  +L
Sbjct: 115 ASAPAVLGFDIE-WSVRPSGPRRQVALVQLSARDGYTVLFHLKYEERRRGILPTALKELL 173

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           V++  +      R D+  LF ++GV   +PV   ++A            L+    ELL  
Sbjct: 174 VNDTIQLAGVSVRGDLTHLFNSYGVHGTKPVDIGQLAGVHLHVKNGARSLQALTAELLHR 233

Query: 130 NISKAQ-QSSDWSADDLSDEQLQYAASD----VVHLHALRLQFTEKLQR 173
            ++K   ++S+W    L+ +Q +YA  D    V+  + +  +    L  
Sbjct: 234 RLAKDAVRTSNWET-TLTKDQEKYAGLDSYAGVLLFYRIWARMDPILTE 281


>gi|195443798|ref|XP_002069580.1| GK11496 [Drosophila willistoni]
 gi|194165665|gb|EDW80566.1| GK11496 [Drosophila willistoni]
          Length = 349

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    + +++  +K    LV +L   K     
Sbjct: 154 PMAFDMEWPF-SFQTGPGKSSVIQVCVDERCCYVYQLSKLKKLPAALVALLNHPKVR--L 210

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 211 HGVNIKADFRKLQRDFPEVSADPLIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMD 270

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +     ++
Sbjct: 271 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDLEQR 310


>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
 gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
          Length = 878

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 59/136 (43%), Gaps = 18/136 (13%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           L  +  +EK +K+ H  +  + V+     +  + + F TKIA+ L +   + + LKD ++
Sbjct: 378 LKNLFENEKIKKVCHDSKK-VYVVLNKHNITAKNIAFDTKIAAYLLQPSKSDYMLKDLIE 436

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD-LATSC 183
           E+L +++ K              + ++   ++  ++  +  +  + ++     + L T  
Sbjct: 437 EMLLLSL-KEY------------DNIK--INETYYIKDIYEKLEKDIKESNMEELLYTVE 481

Query: 184 CNFLMDRAELDLLGWE 199
              +   A ++  G+ 
Sbjct: 482 LPLVEVLASMECAGFR 497


>gi|322494281|emb|CBZ29580.1| hypothetical protein, unknown function [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 750

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 39/188 (20%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA----PNLVGMLVDEKREKI 78
           IA+D E   L      +CI+ L+    TV II +      A      L G+L      K+
Sbjct: 550 IALDLEGRSLGRMGS-ICIITLATYS-TVYIIDVVMLGPEALRAGSPLKGVLESRDIMKL 607

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIAS--RLTRTYTNQHGLKDNLKELLGINISKAQQ 136
              GR D   LF+ + VR++ V   +I+S   L  T     G+K      L + +     
Sbjct: 608 MFDGRADCDALFFLYCVRLQNVCDLQISSCFALFPTSPRLPGMKSV---FLALGL----- 659

Query: 137 SSD-----------------------WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +D                       W    L+D  +QY A DV +  A +L  ++ +++
Sbjct: 660 FTDEDTGIKNAGRRLFNPLCGGSFDRWEERPLTDVLVQYCAVDVKYFFAAQLILSDHVEQ 719

Query: 174 LGRSDLAT 181
             R   A 
Sbjct: 720 GCRLGEAR 727


>gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73]
 gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans]
          Length = 922

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 18/175 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
            R  D  A DTET  L   R  L  +  +   G  D + +      AP           L
Sbjct: 340 LRAADGFAFDTETDALDAMRANLVGLSFAIEPGHADYLPLGHDYPGAPVQLDRVQALAAL 399

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  + K+  +G++D+ VL    GV+V      T + S +  +  ++H +    K 
Sbjct: 400 APLLEDPAKRKVGQHGKYDLHVLRRH-GVQVHGYADDTMLESFVLNSTASRHDMDSLAKR 458

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
            LG +  K +  +   A  ++  Q+       YAA D      L    + +L   
Sbjct: 459 YLGYDTVKYEDVAGKGAKQIAFSQVAIDDATGYAAEDADITLRLHRALSAQLDAE 513


>gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74]
 gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74]
          Length = 1024

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 19/196 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLVD 72
               +++  D+ET  + P    L  +  +   G    + + A +  A         +  +
Sbjct: 447 LSQQESLCFDSETTAIDPVEADLVGLSFAYRAGEAFYVPVPADRAEAQAIVDQFKPVFEN 506

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG--- 128
              EK+    ++D+ +L    GV V+  +F T IA  L      +H +       L    
Sbjct: 507 PTIEKVGQNLKYDLLMLKKY-GVEVQGKLFDTMIAHYLIEPEM-RHNMDMMAMTYLNYSP 564

Query: 129 INISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + I             L+       + + YA  D      L+  F  +L++     L   
Sbjct: 565 VEIEALIGKK--GKGQLTMRDVDIQKVVDYAGEDADITLQLKHAFAPRLEKDNLHKLFDQ 622

Query: 183 -CCNFLMDRAELDLLG 197
                +    +L+L G
Sbjct: 623 VEMPLVQVLTDLELEG 638


>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
 gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
          Length = 920

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 20/174 (11%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNLVG 68
             D  +VDTET  L      L  +  S   G    + +                   L  
Sbjct: 340 ASDVFSVDTETTSLNYMDAELVGISFSLQAGEAAYVPVGHTAIGTPEQLPLDYVLNALKP 399

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L  E   KI    ++D+ VL    G+ +  V F T + S +      +H +     + L
Sbjct: 400 ILEAETPAKIGQNLKYDMNVLARY-GITLSGVRFDTMLESYVLDAAATRHDMDSLALKYL 458

Query: 128 GIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           G           K  +   +    L      YAA D      L      ++Q+ 
Sbjct: 459 GQKTIAFEDVAGKGAKQITFDQVPLLQA-ATYAAEDADVTLKLHQALWPRVQKT 511


>gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804]
 gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii]
          Length = 948

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 29/184 (15%)

Query: 13  AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-------- 62
            E  A+  D   +A+DTET  L   +  L  + ++   G    I +A    +        
Sbjct: 363 DEWMAQAADTPLVALDTETTSLDEMQASLVGISMALAPGVACYIPLAHRGPDSAEQLPKR 422

Query: 63  --APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                +   L D  R K+ H+ ++D  V              T + + +  ++    GL 
Sbjct: 423 EVLERMRAWLQDPARPKLLHHAKYDAHVFANEGVALAGIQDDTMLQAYVLESH-RGVGLN 481

Query: 121 DNLKELLG------INI----SKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTE 169
           D  +  LG        +    +K         D+++ EQ   YA  D      L      
Sbjct: 482 DLAQRYLGRGGITYEELCGKGAKQIGF-----DEVAVEQAGHYACEDADFTLQLHHALRP 536

Query: 170 KLQR 173
           ++  
Sbjct: 537 RVAA 540


>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
 gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
          Length = 903

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 23/128 (17%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122
           P L+ +L ++   K  H  ++ +  L  + G  ++ + F T +++ L        G+KD 
Sbjct: 385 PGLIALLTNKNITKTAHNAKY-LMNLLASAGQEIQGLDFDTMLSAHLLGE--KNLGIKDL 441

Query: 123 LKELLGINIS----------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKL 171
           + E  G+ I+          K +  S   A +LS+  QL    +D  +   L+  F  +L
Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFS---ASELSEAAQL---VAD--YTFRLKGLFAAQL 493

Query: 172 QRLGRSDL 179
             +   DL
Sbjct: 494 AEINLIDL 501


>gi|225450557|ref|XP_002277523.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 210

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 17  ARYVDAIAVDTE-------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           A     + +D E       ++       +LCI      D    I+++    +   +L   
Sbjct: 52  AGKPMVVGLDIEWRPHPIRSMSNKSATLQLCI------DDKCLILQLFYMDEIPESLKSF 105

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLG 128
           L D     +      DIA L   +G+          +A +       + GLKD   E+  
Sbjct: 106 LADSNFTFVGIEVGDDIAKLKNEYGLDCSRSADIRDLAMQRWPGRFRRPGLKDLAWEVTN 165

Query: 129 INI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + +   K    S+W A  LS+ Q++YA  D    + +  + 
Sbjct: 166 LPMKKPKHVSMSNWEARVLSENQIEYACIDAYASYKIGHKL 206


>gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
 gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
          Length = 744

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           I+   +       L     D    K+ H  +FDI +L    G+++R + + T+ A RL  
Sbjct: 176 ILPQLSRDLVNETLRPFYEDPTVGKLAHNAKFDIHMLDRE-GIKLRGLTWDTQEAMRLLN 234

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSD-WSA------DDLSDEQLQYAASDVVHLHALR 164
                  LK+ + + L I    +    D +        DDL    L YAA D      LR
Sbjct: 235 ENEPSFALKNLVTKYLRIE---SSTYGDLFGKIGFDEVDDLEIA-LAYAAKDGDVTLKLR 290

Query: 165 LQFTEKLQRL 174
               E L ++
Sbjct: 291 NFQREHLAKM 300


>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
          Length = 968

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 27/192 (14%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRL---CI-VQ-----------LSPGDGTVD---IIRI 56
             A+     + DTET  L P + +L    + +Q           ++  D  +    I+  
Sbjct: 373 LEAQEQGYFSFDTETTSLNPMQAKLVGFSLALQPGKAAYVPLEHVAEEDNLLGGGRIVPQ 432

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              QK    L  +L ++   KI    ++D  V+     + +     T + S       + 
Sbjct: 433 IETQKALALLKPILENQAVLKIGQNIKYDWLVMKQH-NIVMCSFDDTMLLSYALEAGIST 491

Query: 117 HGLKDNLKELLGIN-IS-KAQQSS-----DWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           HG+    +  LG   IS K    S      ++  DL    L YAA D      L      
Sbjct: 492 HGMDVLSERWLGHKPISYKDLTHSRRKIVSFARVDLKQATL-YAAEDADITLRLWQVLKP 550

Query: 170 KLQRLGRSDLAT 181
           +L     + +  
Sbjct: 551 QLVAQKMTKIYE 562


>gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
          Length = 1004

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L D    K+    ++   V+    G+ +R    T + S +       HG+   
Sbjct: 475 LSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSFDDTMLMSYVLDAGNGAHGMDSL 533

Query: 123 LKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +  LG      K    +      L+      D+   YAA D      L      +L   
Sbjct: 534 AERWLGHTPIAYKDVTGT--GRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAK 591

Query: 175 GRS 177
           G +
Sbjct: 592 GLT 594


>gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H]
 gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H]
          Length = 944

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 23/149 (15%)

Query: 5   RVHEGDIPAEC--AARYVDAIAVDTETLGLMPRRDR-LCI-VQLSPGDGTVDIIRIAAGQ 60
            V + D        AR    +AVDTET  L  R+   + + + ++PG            +
Sbjct: 337 TVTDMDALDRWIADARAAGVMAVDTETDSLNARQANMVGLSLSVAPGKACYVPFLHETIR 396

Query: 61  KNAPN-------------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
                                   L  +L D    K+F   ++D+ V        + P+ 
Sbjct: 397 DLLEEDSTGEAFVRQLDRTEALERLKPLLQDASVLKVFQNAKYDLTVFRGAGIPEITPID 456

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            T + S       +  G+ +  +  LG  
Sbjct: 457 DTMLISYAQSAGEHGQGMDELSELHLGHT 485


>gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179]
 gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179]
          Length = 925

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 13/122 (10%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGM 69
               A+DTET  L   + +L  +  +  +G    + +     + P           L  +
Sbjct: 348 ASLFAIDTETNSLNYMQAKLVGLSFALENGEAAYLPLQHHYLDCPQQLSWKTVLAALKTV 407

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D   +K+    ++D+ +L    GV ++  V+ T + S    + T +H + D  K  L 
Sbjct: 408 LEDPNIKKVGQNLKYDLTILARH-GVELQGVVYDTMLESYTLDS-TGRHNMDDLAKRFLH 465

Query: 129 IN 130
            +
Sbjct: 466 HD 467


>gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83]
          Length = 1004

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L D    K+    ++   V+    G+ +R    T + S +       HG+   
Sbjct: 475 LSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSFDDTMLMSYVLDAGNGAHGMDSL 533

Query: 123 LKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +  LG      K    +      L+      D+   YAA D      L      +L   
Sbjct: 534 AERWLGHTPIAYKDVTGT--GRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAK 591

Query: 175 GRS 177
           G +
Sbjct: 592 GLT 594


>gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
 gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
          Length = 963

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 71/221 (32%), Gaps = 29/221 (13%)

Query: 5   RVHEGDIPAECA-----ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           R H  D P             DA   DTET  L      L  +  S   G    I + A 
Sbjct: 369 RYHTVDTPELMTSLAHYLSLQDAFCFDTETTSLDTTDAELVGLSFSYLAGEAFYIPVPAD 428

Query: 60  QKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYT 114
           ++ A         +  +E  EKI    ++D+ VL    G+ V   +  T +A  L     
Sbjct: 429 RQQAEEIVGYFRAVFENENIEKIGQNIKYDMLVLKNY-GIEVHGKLSDTMLAHYLLEP-D 486

Query: 115 NQHGLKDNLKELLGINIS-----------KAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +HG+       L                K     D +  +++     YA  D      L
Sbjct: 487 KRHGMDILAASYLNYEPVSITSLIGKKGGKQGNMRDVAIPEITQ----YAGEDADITFQL 542

Query: 164 RLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWENVDI 203
              F+ +L ++  + L            A ++  G   +DI
Sbjct: 543 HSIFSRELPKVNAAKLFNEVEMPLTKVLASMENTGV-RLDI 582


>gi|308191625|sp|B4N9D3|WRNXO_DROWI RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5'
           exonuclease
          Length = 356

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    + +++  +K    LV +L   K     
Sbjct: 161 PMAFDMEWPF-SFQTGPGKSSVIQVCVDERCCYVYQLSKLKKLPAALVALLNHPKVR--L 217

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 218 HGVNIKADFRKLQRDFPEVSADPLIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMD 277

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +     ++
Sbjct: 278 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDLEQR 317


>gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
 gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
          Length = 976

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 40/230 (17%)

Query: 4   IRVHEGDIPAECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG- 59
           I V++ ++  +   R       +++DTET  L P    L  + L  G+   D+  I  G 
Sbjct: 361 IIVNDFELLDKLIKRLNKTNQIVSLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGH 420

Query: 60  ------------QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIA 106
                       +     L   + D K+EK     +FD  + F   G+ ++ V F T +A
Sbjct: 421 QIKKETPNQLSIEDVFSKLRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTFDTLLA 479

Query: 107 SRLTRTYTNQHGLKDNLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDV 157
             L      +HGL +    L G         +  +K     D     +++  + Y   DV
Sbjct: 480 DYLLNNQ-EKHGLSEISFRLFGFKPPSFKETVGKNKDFSFVD-----INEASI-YCGYDV 532

Query: 158 VHLHALRLQFTEKLQRLGRSDLA----TSCCNFLMDRAELDLLGWENVDI 203
                +   F E+  +  + +L               +++++ G   +DI
Sbjct: 533 FLTFKIVKIFKERFSKE-KDELIKLFKEIELPLEPVLSQMEMNGIT-IDI 580


>gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
 gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
          Length = 970

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 54/144 (37%), Gaps = 35/144 (24%)

Query: 22  AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLVG 68
            +A DTET  L PR+  L    C      G+   DI  I  G K            +L  
Sbjct: 381 PVAWDTETTDLNPRQANLVGIGC----CWGNNPTDIAYIPIGHKQGKQLKKEQVLDSLRT 436

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           +L      K+F   +FD  +  +      GV    VF T +AS +       H L +  +
Sbjct: 437 ILESSDYPKVFQNTKFDRLIFKHQAINLDGV----VFDTMLASYVLHPE-KSHKLSELCE 491

Query: 125 ELL-GIN--------ISKAQQSSD 139
           + L GI         ISK Q  +D
Sbjct: 492 QYLEGITCQNYDELGISKKQTIAD 515


>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 976

 Score = 54.2 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 17  ARYVDAIAVDTETLGLM------------PRRDRLCIVQLS--PGDGTVDII-------- 54
           AR    +A DTE   L              R  R   V L+     G  D++        
Sbjct: 376 ARETGLLAFDTEASSLSAMKCDLVGVSFATRAGRAAYVPLAHVSPSGEADLLSDKAVEDE 435

Query: 55  --RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
                   +    L  +L D+   KI    ++D  V+    G+ + P   T + S     
Sbjct: 436 IGPQLPIDEALAILKPVLEDDAVLKIGQNVKYDYLVMRRH-GITMAPFDDTMLISYALDA 494

Query: 113 YTN--QHGLKDNLKELLGINIS--KAQQSSDWSADDLS----DEQLQYAASDVVHLHALR 164
             +   HG+ +  +  LG      K    S   A  ++    D+   YAA D      L 
Sbjct: 495 SASLAGHGMDELSERFLGHKPMSYKELCGSGKGARPIAACAIDKVTAYAAEDADVTLRLW 554

Query: 165 LQFTEKLQRLG 175
                +L   G
Sbjct: 555 QVLKPRLVAEG 565


>gi|296415644|ref|XP_002837496.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633368|emb|CAZ81687.1| unnamed protein product [Tuber melanosporum]
          Length = 970

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 22/148 (14%)

Query: 41  IVQLSPGDGTVD------IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94
           ++Q++               +I   +   PNL  +L  E   K       D   +    G
Sbjct: 664 LMQIANESDIALFHFARVPGQIPDFELVPPNLRRVLESENIMKAGVSVTGDAKRVSKFLG 723

Query: 95  VRVRPVF----------CTK-IASRLTRTYTNQHGLKDNLKELLGINISKAQQS-SDWSA 142
           V    +F            + +A  +TR       L    +E L + + K+    S+W+ 
Sbjct: 724 VHSAGIFELSDLWNLVHDVRTLAGSITRRL---IALSRLTEECLYLPLDKSASRISNWAV 780

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEK 170
            +LS++Q+QYAA+D      +      +
Sbjct: 781 -ELSNKQVQYAANDAYAAFRVFDALERE 807


>gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
 gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
          Length = 928

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 66/190 (34%), Gaps = 37/190 (19%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCI------VQLSPGDGTVDIIRIAAGQKN------ 62
            AA     +AVDTET  L       C+      V L+ G      + +  G K+      
Sbjct: 338 AAAHAEGLVAVDTETDMLD------CVSCALVGVSLAVGPNAACYVPVGHGGKDMFAEKP 391

Query: 63  --------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
                      L  +L D+   KI    ++DI VL    G+ + P   T + S       
Sbjct: 392 DQLPLALVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAPYDDTIVMSFDLDAGQ 450

Query: 115 N--QHGLKDNLKELLG-INIS-K-----AQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           +   HG+ +  K  L  I IS K      +    ++   L     +YAA D      L  
Sbjct: 451 SLAGHGMDEAAKTHLNHICISFKDVCGTGKSQISFAEVPLDKA-TEYAAEDADVTLRLWK 509

Query: 166 QFTEKLQRLG 175
            F  ++   G
Sbjct: 510 LFKTRIANEG 519


>gi|195497632|ref|XP_002096183.1| GE25207 [Drosophila yakuba]
 gi|308191618|sp|B4PLB3|WRNXO_DROYA RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5'
           exonuclease
 gi|194182284|gb|EDW95895.1| GE25207 [Drosophila yakuba]
          Length = 354

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 159 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNLKKLPAVLVALINHPKVR--L 215

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 216 HGVNIKNDFRKLARDFPEVSAEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMD 275

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +  +   +
Sbjct: 276 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELERR 315


>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
          Length = 925

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 31/194 (15%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRL---CI-VQ-----------LSPGD---GTVDIIRI 56
             A+     + DTET  L P + +L    + +Q           ++  D   G   I++ 
Sbjct: 330 LEAKEQGYFSFDTETTSLDPMQAKLIGFSLALQPGKAAYIPLEHVAGEDDLWGDRRIVQQ 389

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              QK    L  +L ++   KI    ++D  V+     + +R    T + S       + 
Sbjct: 390 IETQKALALLKPILENQAILKIGQNIKYDWLVMKQY-NIVMRSFDDTMLLSYALEAGIST 448

Query: 117 HGLKDNLKELLGINISKAQQSSD--WSADDL-SDEQLQ------YAASDVVHLHALRLQF 167
           HG+    +  LG    K+    D  ++   + S  Q+       YAA D      L    
Sbjct: 449 HGMDILSERWLGH---KSITYKDLTYNGRKVNSFAQIDLKQATLYAAEDADITLRLWQVL 505

Query: 168 TEKLQRLGRSDLAT 181
             +L     + +  
Sbjct: 506 KPQLVAQRMTKIYE 519


>gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
 gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
          Length = 937

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +   Q  AP
Sbjct: 336 TTEAQFAAVLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSQTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDAK 520


>gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1]
 gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1]
          Length = 908

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 11/120 (9%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------QKNAPNLVG 68
           + +     ++DTET  L     +L  + +S  +     I I A                 
Sbjct: 336 SLKKAKYTSIDTETSSLDTYTAKLIGISISFKEFEGYYIPIEAKGKIYIEKNYIIQKFNN 395

Query: 69  MLV-DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +   + K   I    +FD  +L       + P F T IA+ L  T + +  L    ++ L
Sbjct: 396 LFESNPKI--IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDTNS-KVSLDFLAEKYL 452


>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
 gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
          Length = 903

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 23/128 (17%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122
           P L+ +L ++   K  H  ++ +  L  + G  ++ + F T +++ L        G+KD 
Sbjct: 385 PGLIALLTNKNITKTAHNAKY-LMNLLASAGQEIQGLDFDTMLSAHLLGE--KNLGIKDL 441

Query: 123 LKELLGINIS----------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKL 171
           + E  G+ I+          K +  S   A +LS+  QL    +D  +   L+  F  +L
Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFS---ASELSEAAQL---VAD--YTFRLKGLFAAQL 493

Query: 172 QRLGRSDL 179
                 DL
Sbjct: 494 AETKLIDL 501


>gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805]
 gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805]
          Length = 988

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 68/197 (34%), Gaps = 28/197 (14%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-----------APNLV 67
             + +AVDTET  L P + +L  + +  G    D+  I  G +               L 
Sbjct: 388 PTEPVAVDTETTDLNPFKAQLVGIGVCWGPWLSDLAYIPVGHQAPEGSQLPLEVVLEQLA 447

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
             L   K  K     ++D  +L     +    V  T +A    R    +H L    +   
Sbjct: 448 PWLSSPKHPKALQNAKYDRLILLRHGLLLGGVVMDTLLA-DYLRDAAAKHSLDVMAERDY 506

Query: 128 GINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           GI            K  ++S ++   +    L Y A DV     L L   E+LQ  G   
Sbjct: 507 GITPTVFSDLVGKPKDGKASCFAEVPIDQAAL-YCAMDVHLTRKLALDLREQLQTSG--- 562

Query: 179 LATSCCNFLMDRAELDL 195
                   L+DR EL L
Sbjct: 563 ---QQLTNLLDRVELPL 576


>gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
          Length = 937

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E  + A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 335 TTEAQLAALLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAGEAIYIPVGHSLTAAP 394

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 395 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 453

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 454 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 508

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 509 EAHLRAQMDAK 519


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 68/200 (34%), Gaps = 27/200 (13%)

Query: 2   TTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
            T+     ++     A +    +A DTET GL   +D+L     S  D     +  A   
Sbjct: 315 ATLITDNEELQKVLQALKPETIVAFDTETTGLDYEKDKLVGFSFSFNDDEAFYVPFAHFY 374

Query: 61  KNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL 109
              P+          +  +   +    + H  +FD+  +       +  ++  + I + L
Sbjct: 375 LGVPDQISEKDAALAMKKIFNSK---VVGHNIKFDLHFVSRFLNDDMLNIYSDSMILAWL 431

Query: 110 TRTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
               +   GL     +LL   +        K +  +   + +L D   +YAA D      
Sbjct: 432 INPES-ALGLDKLSDKLLDHTMLGFKDTVKKGETFA---SVELEDA-SKYAAEDAYITLK 486

Query: 163 LRLQFTEKLQRLGRSDLATS 182
           L   F EKL+    + L   
Sbjct: 487 LFNLFNEKLKLQDATHLIDE 506


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 22/197 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75
                 IA DTET GL  +  ++        +     + +          + +   +K  
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAI 372

Query: 76  EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E IF      H  ++D  ++   FG+   +    T I + L +  +++  + D    L  
Sbjct: 373 EVIFNHFVIGHNLKYDFKIIQNNFGLNLPQKYADTMILAWL-KNPSSRVNMDDLALRLFN 431

Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
                    + K +   ++++ +L     +YAA D        L F + L+     +LA 
Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLDFLKNLE-TPLLELAK 486

Query: 182 SC-CNFLMDRAELDLLG 197
           +C  +F+     ++  G
Sbjct: 487 NCEFDFIKIIMMMEENG 503


>gi|195494004|ref|XP_002094655.1| GE21941 [Drosophila yakuba]
 gi|194180756|gb|EDW94367.1| GE21941 [Drosophila yakuba]
          Length = 274

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           I  I A     P L  +L  ++  K+ HY       L +   + +  +F T +A  L R 
Sbjct: 91  IFDIRALGSIFPELAKILEADQPRKVVHYSHRIADHLLHRQRISLSGIFDTFVALCLERN 150

Query: 113 YTNQHGLKDNLKELLGINISKA---------QQSSDWSADDLSDEQLQYAASDVVHLHAL 163
                 L + +  + GI + +          +   +++A  L+  Q++Y A  V   H +
Sbjct: 151 ERLPISLSEAISFVFGIPMDEILCEEVTGAYESRRNFTARPLTHNQIRYMARMVQLQHLM 210

Query: 164 RLQFT 168
             +  
Sbjct: 211 HHRLN 215


>gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT]
 gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT]
          Length = 878

 Score = 53.8 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 65/148 (43%), Gaps = 18/148 (12%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRT 112
           I+   G K    L  +  +EK +K+ H  +  + V+     +  + + F TKIA+ L + 
Sbjct: 366 IKDKDGAKYFEILKNLFENEKIKKVCHDSKK-VYVVLKKHNIAAKNIAFDTKIAAYLLQP 424

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
             + + LKD ++E+L +++ K             D+ ++   ++  ++  +  +  + ++
Sbjct: 425 SKSDYMLKDLIEEMLLLSL-KD------------DDNIK--INETYYIKDVYEKLEKDIK 469

Query: 173 RLGRSD-LATSCCNFLMDRAELDLLGWE 199
           +    + L T     +   A ++  G+ 
Sbjct: 470 KSNMEELLYTVELPLIEVLASMECEGFR 497


>gi|156379680|ref|XP_001631584.1| predicted protein [Nematostella vectensis]
 gi|156218627|gb|EDO39521.1| predicted protein [Nematostella vectensis]
          Length = 855

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 49/173 (28%), Gaps = 49/173 (28%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFH 80
            I V  E + L     ++C + +   +       +  G       L  +L +    K+  
Sbjct: 246 VIGVSCEGVNLSRY-GKICWLLIGTREFVYLFDVLKLGASCFDEGLQEILENGNILKVA- 303

Query: 81  YGRFDI-------------------AVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               DI                   A L+    +    +          +   NQ  L +
Sbjct: 304 ----DIIIYKRERQGELPQLVNGLVACLYEYLNMPPENM-------SFQKYRVNQMQLDE 352

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            +                W+   L +  L  AA  VV+L  LRL   E+L   
Sbjct: 353 AI----------------WTRRPLPERMLDAAAKRVVYLRELRLAQMERLMAE 389


>gi|242058237|ref|XP_002458264.1| hypothetical protein SORBIDRAFT_03g030190 [Sorghum bicolor]
 gi|241930239|gb|EES03384.1| hypothetical protein SORBIDRAFT_03g030190 [Sorghum bicolor]
          Length = 202

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 18/156 (11%)

Query: 23  IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           + +D E        ++ +  +QL  G  +  I ++         L   L D         
Sbjct: 49  VGLDVEWRPSYRSYQNPVATLQLCVG-RSCLIFQLLHADYVPGALAEFLGDRGI------ 101

Query: 82  GRF------DIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISK 133
             F      D   L    G++V        + A  + R    Q GL+  ++ ++G++++K
Sbjct: 102 CFFGVGVAADAERLSDDHGLQVANAVDLRGRAAECMNRPDLRQAGLRALVQAVMGVDLAK 161

Query: 134 AQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            Q+   S W A  LS EQ++YA  D      +  + 
Sbjct: 162 PQRVTMSRWDAYCLSHEQIRYACVDAFVSFEIARRL 197


>gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
 gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
          Length = 873

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 22/197 (11%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIF 79
           + ++ DTET  L     ++     +  +     + I          +   +  +  EKI 
Sbjct: 321 NIVSFDTETTSLE--NPKIVGFSFAFEENKAYYVPINHFYLGVSKQIDEKIALKAIEKIL 378

Query: 80  ------HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130
                 H  +FD  +L         P   T I   +    +   GL    K  L      
Sbjct: 379 EKKVIGHNLKFDFKMLKDYKIKTPTPFADTMILGWIIDPDSP-VGLDSLAKRYLNHQNIK 437

Query: 131 ----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
               + K Q  S+      +    +YA+ D +    L     EK     + D+       
Sbjct: 438 YKEIVGKNQNFSEIDIK--TAA--KYASEDAIITLKLYEVLKEKTWEEVKWDIENIEMPL 493

Query: 187 LMDRAELDLLGWENVDI 203
           +    +++  G + VDI
Sbjct: 494 INILIDMEKEGIK-VDI 509


>gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
 gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
          Length = 936

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 62/181 (34%), Gaps = 25/181 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D +A+DTET  L   R ++  + LS   G    I +     +AP           L
Sbjct: 356 LQQADLVALDTETDSLDEMRAQIVGISLSVQPGAAAYIPLQHSGPDAPAQLPIGQVLARL 415

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKE 125
              L D +R K+  + ++D  V     G+ V+  V  T + S +   +   H L    + 
Sbjct: 416 KPWLEDGRRHKLGQHIKYDRHVFANH-GIEVQGYVHDTMLQSYVLEVHKP-HNLGSLAER 473

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGR 176
             G    K     D     A  L   Q+       Y+  D      +      +LQ   R
Sbjct: 474 HTGR---KGISYEDLCGKGAHQLPFAQVPVDKAAAYSCEDADLTLNVHQTLWPQLQAHDR 530

Query: 177 S 177
            
Sbjct: 531 L 531


>gi|118394980|ref|XP_001029847.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89284120|gb|EAR82184.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1070

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 64/202 (31%), Gaps = 45/202 (22%)

Query: 13   AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-----VDIIRIAAGQKNAPNL- 66
            A    +    + VD E  G + +   + ++Q+S  D       + +      +K      
Sbjct: 838  ALRILQQQSYLGVDLE--GSLSKHGHIELIQISYHDFIQNHSFIYVFDFVEMEKQQEVFI 895

Query: 67   ------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS------------- 107
                    ++ D+   KI    + D   L++ F  ++     T++A              
Sbjct: 896  LAKKAIKQIMEDKSIIKILQGCQKDALALYHLFSTQIINGLDTQVAHNFIIQLKALSDLK 955

Query: 108  ------------------RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
                              ++ + Y   +GL     +   I +   Q +       +++E 
Sbjct: 956  QNNKKKIKDLQYFNCGLNQILQIYNAPNGLNPLKAKFQSIFVDPVQSAHYMKQRPINEEF 1015

Query: 150  LQYAASDVVHLHALRLQFTEKL 171
            L Y++ DV  L  +     + L
Sbjct: 1016 LIYSSKDVEDLIPVFFNILKSL 1037


>gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
 gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
          Length = 900

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 29/186 (15%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK--REK- 77
             +A DTET  L  +  ++        + +   I IA     AP  V +  D K    K 
Sbjct: 332 SIVAFDTETTSLDTKIAKIVGFSFCFNENSAYYIPIAHSYLGAPEQVSI-EDAKSAINKL 390

Query: 78  -----IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI- 131
                I    ++D  ++ + F + +     T I + L  + +++ GL    K      + 
Sbjct: 391 NNFKLIVQNFKYDFDIIKFNFDIELNLFADTIILAWLLDS-SSKVGLDALAKNYFDHTMI 449

Query: 132 ------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCN 185
                  K     D+S  D+S+    YAA D +  + +  +  E+ ++          C 
Sbjct: 450 AFKDVVKKGD---DFSTVDISNA-CNYAAEDALMTYKIYFKLLEEFKKQN--------CE 497

Query: 186 FLMDRA 191
            L+  A
Sbjct: 498 HLLKIA 503


>gi|118394996|ref|XP_001029855.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89284128|gb|EAR82192.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1146

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 66/210 (31%), Gaps = 62/210 (29%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNAPN----------LVG 68
           + VD E         +  +VQ+S    P    + I  I + Q    +          +  
Sbjct: 448 VGVDLEGALRKEGYVQ--LVQISIQLKPDFSQIFIFDIYSIQNIKEDKILEKNMINCIQN 505

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS--------------------- 107
           ++ D    KIFH  R D   L        + VF T  A+                     
Sbjct: 506 IMQDVNIIKIFHDCRRDSLALHLFMKACPKNVFDT--AAIHAFKLHVEKYIDFTKNKFKG 563

Query: 108 ----------RLTRTYTN--QHGLKDNLKEL---LGINISKA--QQ------SSDWSADD 144
                     +L ++     Q GL D L+      GIN+ K    Q      S  +    
Sbjct: 564 LNTKEDKNILQLLKSLEELKQPGLNDILQIYNTSHGINLLKDSMHQKFQEMPSLYFLQRP 623

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           +  E L+Y+A DV  L        + +++ 
Sbjct: 624 IDPEFLEYSARDVEDLIEAYHFMIDTVKQT 653


>gi|194900214|ref|XP_001979652.1| GG16480 [Drosophila erecta]
 gi|308191615|sp|B3NZ68|WRNXO_DROER RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5'
           exonuclease
 gi|190651355|gb|EDV48610.1| GG16480 [Drosophila erecta]
          Length = 354

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 18/173 (10%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    I ++   +K    LV ++   K     
Sbjct: 159 PMAFDMEWPF-SFQTGPGKSAVIQICVDEKCCYIYQLTNLKKLPAVLVALINHSKVR--L 215

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 216 HGVNIKNDFRKLARDFPEVSAEPLIEKCVDLGVWCNEVCETGGRWSLERLTNFIAKKAMD 275

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           K++  + S W    L + QL YAA DV     +      +L+R  ++ +    
Sbjct: 276 KSKKVRMSKWHVIPLDENQLMYAAIDVY----IGQVIYRELERREKAKIINEE 324


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 57/153 (37%), Gaps = 29/153 (18%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122
             L  +L DEK  K  H  ++ +  L  + G  V+ + F T IA+ L         +KD 
Sbjct: 385 SGLAALLGDEKISKTAHNAKY-LMNLLLSAGQAVKGLDFDTMIAAHLLGE--KNLAIKDL 441

Query: 123 LKELLGINIS----------KAQQSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKL 171
           + E  GI I+          K    S      LS+  QL   A+D  +   L+  F  +L
Sbjct: 442 VFEHFGIEIADIENILTRNGKKASFS---EVQLSEAAQL---AAD--YTFRLKGIFAAQL 493

Query: 172 QRLGRSDL-ATSCCNFLMDRAELDLLGWENVDI 203
                 DL A      L       LLG E   I
Sbjct: 494 AETRLMDLFARVEMPLLPI-----LLGMERTGI 521


>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna
          Length = 605

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 18/142 (12%)

Query: 49  GTVDIIRIAAGQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           G    I +A    +AP+          L  +L DEK  K+    ++D  +L    G+ +R
Sbjct: 55  GVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELR 113

Query: 99  PV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------Q 151
            + F T + S +  +   +H +    +  L       ++ +    + L+  Q+      +
Sbjct: 114 GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGR 173

Query: 152 YAASDVVHLHALRLQFTEKLQR 173
           YAA D      L L+    LQ+
Sbjct: 174 YAAEDADVTLQLHLKMWPDLQK 195


>gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1]
 gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1]
          Length = 941

 Score = 53.5 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 20/168 (11%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKRE 76
           D +  DTET  +      L  +  +   G    I   A      +    L  +  +EK  
Sbjct: 368 DQLCFDTETTSVNAMEAELVGISFAYLSGEAYYIPCPADRAETDQILEQLKPVFQNEKIL 427

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS---- 132
           KI    ++D+ +L          ++ T +A  L      +H +    ++ L         
Sbjct: 428 KIGQNIKYDLLILKNYDVEVKGKLYDTMLAHYLIEPEG-KHSMDWLAEQYLNYQPVSITE 486

Query: 133 ------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173
                 K Q     +  D+  +Q+ +YA+ D      L+ +    L+ 
Sbjct: 487 LIGKKGKNQG----NMRDVDVDQVTEYASEDADITLQLKEKLDPFLKE 530


>gi|317139033|ref|XP_003189119.1| 3-5 exonuclease [Aspergillus oryzae RIB40]
          Length = 340

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 17/134 (12%)

Query: 39  LCIVQLSPGDGTVD----IIRIAAGQKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYT 92
           + ++QL+           + R A G ++   P L  +L      K     + D   L   
Sbjct: 142 VSLIQLASSRRIALFHIAMFRPARGAEDLVPPTLKRILESPDVIKAGVSIKADCTRLRKY 201

Query: 93  FGVRVRPVFCTKIASRLTRTYTNQHG--------LKDNLKELLGINISKA--QQSSDWSA 142
            G+  R +F      +L +   +  G        L   ++E  GI ++K    + SDW++
Sbjct: 202 LGIETRGIFELSHLYKLVKYSQSNPGLVNKRTVNLSAQVEEHFGIPLAKDVEVRCSDWAS 261

Query: 143 DDLSDEQLQYAASD 156
             L   Q+ YAA+D
Sbjct: 262 A-LDYSQVHYAAAD 274


>gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
 gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
          Length = 882

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 4   IRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK- 61
           +  ++ D       A     +A+  E      R D +  + ++  +  + ++ +      
Sbjct: 317 VTTNQDDFDELLVNATRAGKVALYLE----GTRHDGISRIFVAVPEQDIYLLPLQDTDPY 372

Query: 62  -NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119
                L  +  + + +K FH  +  +  + +  G+ ++ + F T +A+ L     + + L
Sbjct: 373 PALTVLQALCENSEIKKYFHDAKSAL-WMLHHHGIELKSLAFDTMVAAYLLNPTASGYDL 431

Query: 120 KDNLKELLGINI 131
            D   E LGI +
Sbjct: 432 IDLALEHLGIVL 443


>gi|242054351|ref|XP_002456321.1| hypothetical protein SORBIDRAFT_03g033960 [Sorghum bicolor]
 gi|241928296|gb|EES01441.1| hypothetical protein SORBIDRAFT_03g033960 [Sorghum bicolor]
          Length = 210

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           + ++Q+   D    + +I         L   L D +   +    R D A L   +G+ V 
Sbjct: 71  VAVLQICV-DRRCLVFQILRADYVPDALSDFLADRRFTFVGVGIRDDAAKLRDGYGLEVP 129

Query: 99  PVFCTK-IASRLTRTY-TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAA 154
                + +A+R        + GL+  + E+LG+ + K    + S W    LS  Q +YA 
Sbjct: 130 RTVDLRRLAARTLGKPDLRRAGLQRLVWEVLGVQMEKPHHVRVSAWDKRKLSKAQFKYAC 189

Query: 155 SD 156
           +D
Sbjct: 190 AD 191


>gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153]
          Length = 930

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFSALLDKLSQADTIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D + +  ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIEQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDAK 520


>gi|296416175|ref|XP_002837756.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633639|emb|CAZ81947.1| unnamed protein product [Tuber melanosporum]
          Length = 253

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 43/206 (20%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAAG------- 59
            D+P      +   + +D E   L      + I+Q+   P + T  +     G       
Sbjct: 23  SDLPN-----HPPPLYLDLEGERLGRH-GTIAIIQIHVLPQNHTYLLDITTLGREAFTFR 76

Query: 60  -QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASRLTRTYTN 115
               A NL  +L      K     R D   LF  + + +R V   ++   A+R  R    
Sbjct: 77  ENLQAKNLKTILESPSITKCLFDVRNDADALFNLYDISLRGVQDIQVMNYAAREVRNGVR 136

Query: 116 Q-----HGLKDNLKELLGI--------NISKAQ-----------QSSDWSADDLSDEQLQ 151
                  GL  ++    G+           K +             + ++   L  + L+
Sbjct: 137 GRGPRVMGLAKSIAADCGLNRAALAEFERKKEEGGMIFNPQFGGSYAVFAERPLRQDVLE 196

Query: 152 YAASDVVHLHALRLQFTEKLQRLGRS 177
           Y   DVVHL  L  ++ + L   G  
Sbjct: 197 YCVGDVVHLPTLWRKYHDILGGRGWL 222


>gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381]
 gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 31/208 (14%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
               V  IA DTET  +     ++        + +   + +A     AP+    ++D+  
Sbjct: 308 DLENVKEIAFDTETTSVDSHNAKIVGFSFCWDEKSSFYVPLAHSYLGAPD----MLDKNI 363

Query: 76  EK-----------IFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNL 123
            K           I    ++D  ++   FG+     +  T I + L     N  G+ +  
Sbjct: 364 AKRLIEAIYTKFIIGQNLKYDFRIVRNNFGLNPPAKYADTMILAWLMDP-DNSVGMDNLA 422

Query: 124 KELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           K     +       + K +  S  S D  +     YA+ D         +F   L     
Sbjct: 423 KRYFDYDTIKFENVVKKGENFS--SVDVKNAA--NYASEDAWITLKFYKKFCGILSTE-L 477

Query: 177 SDLATS-CCNFLMDRAELDLLGWENVDI 203
            DLA +    F+     ++  G + +DI
Sbjct: 478 LDLAKNLEFPFIKVLLNMEENGIK-MDI 504


>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
 gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
          Length = 910

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 13/127 (10%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP---------- 64
              +    +A+DTET  L P + +L  +  S   G    + +A     AP          
Sbjct: 327 LLLKSAPLVALDTETTSLDPMQAKLVGMSFSVEAGKAAYVPLAHDYTGAPQQLDFTAALR 386

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNL 123
            L  ML D    K+    ++D  VL    G+ +  +   T + S +  ++   HG+ D  
Sbjct: 387 QLRPMLEDASIPKLGQNLKYDKHVLANH-GIALNGITHDTLLQSYVLESHRT-HGMDDLA 444

Query: 124 KELLGIN 130
              LG+ 
Sbjct: 445 MRHLGVQ 451


>gi|290991532|ref|XP_002678389.1| predicted protein [Naegleria gruberi]
 gi|284092001|gb|EFC45645.1| predicted protein [Naegleria gruberi]
          Length = 839

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 12/99 (12%)

Query: 20  VDAIAVDTETL-GLMPRRDRLCIVQLS------PGDGTVDIIRIAAG----QKNAPNLVG 68
              I +D E    L+ +   LCI+Q+S      P    + II +         N  NL  
Sbjct: 65  TPCIGLDCEGSPDLVKQSGTLCIIQISLINKLHPEILDIYIIDVFKIGGQELSNKTNLRK 124

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIA 106
           +L  +   K+ H GR D  VLFY   G ++   F T+IA
Sbjct: 125 LLESKTVLKVIHDGRRDSDVLFYQMNGTKLNFTFDTQIA 163



 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 118 GLKDNLKELLGINIS--KAQQS------SDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           GL   L +   I+ S  K  Q       + W    LS +QL+ AA DV +L  L    T+
Sbjct: 531 GLVRLLHDFCMIDYSSKKTIQEQVISEETYWKTRPLSSDQLEGAALDVKYLLFLYE--TQ 588

Query: 170 KLQRLGR 176
           +L  + +
Sbjct: 589 RLHLMNK 595


>gi|226533262|ref|NP_001141102.1| hypothetical protein LOC100273185 [Zea mays]
 gi|194702630|gb|ACF85399.1| unknown [Zea mays]
          Length = 202

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 6/150 (4%)

Query: 23  IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           + +D E      P ++ +  +QL  G  +  I ++         L   L D     +   
Sbjct: 49  VGLDVEWRPSFGPHQNPVATLQLCVG-HSCLIFQLLYADYVPGALAEFLGDRGIRFVGVG 107

Query: 82  GRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--S 137
              D   L    G+ V        + A R+ R    Q GL+  ++ ++G+N+ K Q+   
Sbjct: 108 VEADAERLSDDHGLVVANAEDLRGRAAERMNRPDLRQAGLRALVQVVMGVNLVKPQRVTM 167

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           S W A  LS EQ++YA  D      +  + 
Sbjct: 168 SRWDASCLSYEQIKYACIDAFVSFEVARRL 197


>gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium]
          Length = 898

 Score = 53.1 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 13/181 (7%)

Query: 30  LGLMPRRDRLCIVQLSPGDGTVDIIR--IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA 87
                   RL  + L  GD    I           A  L  +  +E   KI H  +  I 
Sbjct: 338 DREDSYSSRLSGLALCTGDEVFYIETGTALPENLIATELKELWQNENIHKIGHNIKEFIT 397

Query: 88  VLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS-------KAQQSSD 139
            L     V +  + F T IA  L  +  N + +     + L  ++        K + +  
Sbjct: 398 WLLKH-DVELNGLYFDTMIAEYLIDSIRNGYPIASLSHKYLNRSVPSLDELLGKGKGAKK 456

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGW 198
           +S     +    Y+A +V  +  +     + LQ   + +L        +   A ++  G+
Sbjct: 457 YSEIP-PERLKDYSAYNVKAIFDIWPMQKKVLQENRQEELFNDIELPLITVLASMEYHGF 515

Query: 199 E 199
           +
Sbjct: 516 K 516


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 73/215 (33%), Gaps = 35/215 (16%)

Query: 9   GDIPAECAA-RYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRI-------- 56
            ++ A  AA R  + I+VDTET  L P    +   C    +   G    + +        
Sbjct: 303 AELDAMVAALRQAEVISVDTETTSLNPLLAEVVGFC---FAVEPGHGWYVPVGHCGGGAE 359

Query: 57  --AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                 +    +  +L D    K+    ++D  VL    G+ +R V   T + S L    
Sbjct: 360 EQLPRDEVVAQVQPLLEDATLAKVGQNLKYDALVLRRA-GIALRGVVADTMLQSYLLYPA 418

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHA 162
              HGL     + LG    K    S+ +      +Q+           +YAA D      
Sbjct: 419 ARSHGLDALAADHLGY---KMISYSEVAGT--GKKQIGFDEVALDVATRYAAEDADITLQ 473

Query: 163 LRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
           L  +F  +L    R    T     L    +++  G
Sbjct: 474 LYQRFDAELDGTLRELFETVEMPLLQVLIDMEWWG 508


>gi|303277603|ref|XP_003058095.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460752|gb|EEH58046.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 891

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 118 GLKDNLKELLGI---------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           GL++ +++   +          + K +Q S+W    L   Q+ YAA D   L  L
Sbjct: 833 GLRELVRDSARLRAGGGGEATTLDKREQRSNWDRRPLRGSQIAYAALDAEVLLRL 887


>gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419]
 gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419]
          Length = 1004

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 13/142 (9%)

Query: 46  PGD--GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
            GD  G   I      ++    L  +L D    K+    ++   V+    GV ++    T
Sbjct: 456 TGDLLGGGHIDNQIPAREALSRLKELLEDPSILKVAQNLKYGYLVMKRH-GVTMQGFDDT 514

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGIN--ISKAQQSSDWSADDLS------DEQLQYAAS 155
            + S +       HG++   +  LG     SK    S      L+      D+   Y+A 
Sbjct: 515 MLISYVLDAGNGAHGMESLAERWLGHTPIASKGITGS--GRSSLTIDFVDIDKAAAYSAE 572

Query: 156 DVVHLHALRLQFTEKLQRLGRS 177
           D      L      +L   G +
Sbjct: 573 DADIALRLWHVLKPRLTARGLT 594


>gi|118790166|ref|XP_318059.3| AGAP004757-PA [Anopheles gambiae str. PEST]
 gi|116122387|gb|EAA13165.3| AGAP004757-PA [Anopheles gambiae str. PEST]
          Length = 342

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++ ++  D ++ I  I    K    +  +L +++  ++ H GR    VL + FGV +   
Sbjct: 147 LLSIATHD-SIYIFDI-KWMKITDEMRDLLSNDRYRRVLHNGRLVKDVLQHKFGVELGKC 204

Query: 101 FCTKIAS-RLTRTYT----NQHGLKDNLKELLGINISKAQQ-SSDWSADDLSDEQLQYAA 154
           F   +A   + +T          L+  ++  L +   K    ++++    +SD   + AA
Sbjct: 205 FDVMVAHIAIGKTEGKIVEEGVSLQACVQSYLKLP-DKFFDMNANFDERPVSDTMKREAA 263

Query: 155 SDVVHLHALRLQFTEKL 171
             VV L  L+  F  ++
Sbjct: 264 KHVVFLLPLQDLFIHEI 280


>gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424]
 gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424]
          Length = 966

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 60/179 (33%), Gaps = 33/179 (18%)

Query: 19  YVDAIAVDTETLGLMPRRDRL----CIVQLSPGDG--TVDIIRI-------AAGQKNAPN 65
               +A DTET  L P+   L    C      G+    V  I +          ++    
Sbjct: 374 PAQPVAWDTETTSLEPKDTTLVGIGC----CWGEQPTEVAYIPLNHTEGEQLPQEEVLSA 429

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L  E   K+F   +FD  VL          VF T +AS + R     H L D  + 
Sbjct: 430 LSVILESENYPKVFQNTKFDRIVLLNKGIKLAGVVFDTMLASYVLRPEL-SHKLSDLCER 488

Query: 126 LL---------GINISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL 174
            L          + I K Q         LS E++  Y   D      L  +   +L++ 
Sbjct: 489 YLENIKALNYRDLEIPKTQT-----IAHLSLEKVAHYCGMDAYATFMLVPKLIAELKQA 542


>gi|189236369|ref|XP_001811750.1| PREDICTED: similar to exonuclease 3-5 domain-like 1 [Tribolium
           castaneum]
 gi|270005886|gb|EFA02334.1| hypothetical protein TcasGA2_TC008002 [Tribolium castaneum]
          Length = 313

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 36/132 (27%)

Query: 66  LVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRPVFCTK-IASRLT---------RTY 113
           L  +L      K+ H G   FD   L++ +GV ++ +F T+ + S L+         R  
Sbjct: 169 LREVLESGYICKVVHDGGALFD--CLYHKYGVEMKNIFDTQAVDSMLSKENDDVEIKRNI 226

Query: 114 TNQHGL-----KDNLKELLGINISKAQQSSDWSADDLSD------EQLQYAASDVVHLHA 162
           +             L  +L     K      W    L+        QL      V +L +
Sbjct: 227 SECLTYHFNFPAALLSAVLETMNDKT-----WFIRPLTKSDKIKSAQL------VAYLLS 275

Query: 163 LRLQFTEKLQRL 174
           LR Q  +++ + 
Sbjct: 276 LRDQLMKQILKK 287


>gi|157167399|ref|XP_001653906.1| hypothetical protein AaeL_AAEL009650 [Aedes aegypti]
 gi|108874230|gb|EAT38455.1| conserved hypothetical protein [Aedes aegypti]
          Length = 280

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 26/153 (16%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            IA D E           R  ++QL        + +++  +K    ++ +L   + +   
Sbjct: 130 PIAFDLEWPF-SFQTGPGRTALMQLCVETNVCYLFQLSCLKKLPAAVLQLLTHPRVQ--L 186

Query: 80  H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHG------LKDNLKEL 126
           H    + D   L   F      + +           L   Y   HG      ++  + ++
Sbjct: 187 HGINVKNDFRKLARDFPEANADLLIERCVD------LGGWYNRIHGSCGVWSMERLVLQV 240

Query: 127 LGINISK--AQQSSDWSADDLSDEQLQYAASDV 157
               + K    + S W    LSD+Q  YAA DV
Sbjct: 241 CRQRVDKNKKVRMSKWHVLPLSDDQKLYAAVDV 273


>gi|282879021|ref|ZP_06287783.1| 3'-5' exonuclease [Prevotella buccalis ATCC 35310]
 gi|281298856|gb|EFA91263.1| 3'-5' exonuclease [Prevotella buccalis ATCC 35310]
          Length = 222

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 19/163 (11%)

Query: 21  DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           D + VDTE             ++ ++Q++  +          G    P +  +L + + +
Sbjct: 46  DILGVDTETRPVFRKGQSY--QVSLLQVATKEVCFLFRLNMLGIT--PAIKLLLENTQTK 101

Query: 77  KI---FHYGRFDIAVLFYTFGVRVRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINIS 132
            I   +H    D+ +L      +       + I   L         L+     +    IS
Sbjct: 102 MIGLSWHD---DLLMLHRRSEFKKGYFIDLQDIVGEL---GIKDLSLQKLYANIFHQKIS 155

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           K Q+ ++W  + L+D+Q  YAA+D      L  +   +L+  G
Sbjct: 156 KRQRLTNWDQESLTDKQKLYAATDAWACIMLHEEIL-RLKETG 197


>gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L]
 gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L]
          Length = 996

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 59/174 (33%), Gaps = 31/174 (17%)

Query: 21  DAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNL---------V 67
           + +A DTET  L PR  +L    C      G    D+  I  G K+  NL          
Sbjct: 407 NPVAWDTETSDLEPRDAQLVGIGC----CWGKEFTDVAYIPIGHKDGTNLDKDIVLESLR 462

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L      K+    +FD  VL          VF T +AS +    T  H L D     L
Sbjct: 463 PILESSDYPKVLQNSKFDRLVLRCNGIQLAGVVFDTMLASYVLNPET-SHKLSDLGLHYL 521

Query: 128 GIN-------ISKAQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQR 173
           GI        + K +        DL       Y   D      +  +  E+L++
Sbjct: 522 GIEAQSYNDLVPKGKT-----IRDLDIPTVADYCGMDAYTTFGIVFKLREELEQ 570


>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
 gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
          Length = 921

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 22/194 (11%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            I +    +    A  R     A+DTET  L   R  +  +  S   G    I +A    
Sbjct: 326 DIILTWAQLDDWLARVRAAPLAAIDTETTSLDELRAEIVGISFSVEPGAAAYIPLAHDGP 385

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110
           + P           L   L D K  K+  + ++D  V     G+ VR  V  T + S + 
Sbjct: 386 DTPAQLPLAEVLARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGYVHDTMLQSYVL 444

Query: 111 RTYTNQHGLKDNLKELLGIN-IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
             +   HGL    +   G   IS      K  +   +S   +      Y+  D      +
Sbjct: 445 EVHKP-HGLASLAERHTGRTGISYEDLCGKGAKQIPFSQVPVDKA-AAYSCEDSDQTLDV 502

Query: 164 RLQFTEKLQRLGRS 177
                 +L+   + 
Sbjct: 503 HRVLWPQLEADEKL 516


>gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 939

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 72/222 (32%), Gaps = 40/222 (18%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        + I +DTET  L      L  + ++   G    I +      AP
Sbjct: 337 TTEAQFAALLDKLSQAEKIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 396

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 397 EQLDLQYVLDRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIVGDAMLASYIIESH 455

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +     LG+            +K    +D +    ++    YAA D      L
Sbjct: 456 L-GHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATE----YAAQDADFALRL 510

Query: 164 RLQF-----TEKLQRLGRSDL----ATSCCNFL---MDRAEL 193
                     ++L+   + +L           +   +DRAEL
Sbjct: 511 EAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAEL 552


>gi|73963365|ref|XP_867009.1| PREDICTED: similar to Protein C14orf114 isoform 2 [Canis
           familiaris]
          Length = 522

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 22/122 (18%)

Query: 44  LSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   ++R+      G+     L+ +L D    K+      D + L   +G+ V+ 
Sbjct: 1   MASPSGFCVLVRLPKLICGGKTLPKTLLDILADGTILKVGVGCSEDASKLLQDYGLVVKG 60

Query: 100 VFCTKIASRLTRTYT---------NQHGLKDNLKELLGINISKA--QQSSDWSADDLSDE 148
                      R            N   LK   + +L   + K+   + S+W A++L+++
Sbjct: 61  CLD-------LRYLAVRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAENLTED 113

Query: 149 QL 150
           Q+
Sbjct: 114 QV 115


>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
          Length = 920

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 12/186 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----AGQKNAPNLV-GMLVDEKREK 77
           + +D ET GL   +D +  +  +        + ++     G+    NLV   L  E  + 
Sbjct: 352 VCIDFETTGLDTFKDTIIGISFAIKSNEAFYLDLSGRTKIGKDKCMNLVFDTLEKEDIKV 411

Query: 78  IFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           I H  +++  ++    G  +  + F T +A+ L      ++ + D     L  N  K   
Sbjct: 412 IGHNLKYEYKMM-KAIGKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSD 470

Query: 137 SSDWSADDLSDEQL----QYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRA 191
            +D +   L D  L    +YA  D          F   L+     +L        +   A
Sbjct: 471 LTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLEELFFNIEMPLVSVLA 530

Query: 192 ELDLLG 197
           +++  G
Sbjct: 531 DMEFDG 536


>gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
 gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
          Length = 984

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 19/181 (10%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------- 57
                + A      +   I +DTET  L P + +L  + ++ G G    I +A       
Sbjct: 393 TTREQLAALTERLAHSSVIGLDTETTSLEPMKAQLVGISIAFGAGDAAYIPVAHTFAEQL 452

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116
                  +L   L + +  KI    ++D  V     G+ ++ +     +AS +  ++   
Sbjct: 453 DWTDIKSSLQPFLENPQLGKIGQNMKYDQHVFANH-GIALQGISGDAMLASYIVESHL-G 510

Query: 117 HGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           HGL +  +  L +          K  +   ++   L     +YA  D      +      
Sbjct: 511 HGLDELSERWLQLPTITYESLCGKGAKQIPFADVPLDKA-AEYACQDADFALRIEQHLRT 569

Query: 170 K 170
           +
Sbjct: 570 Q 570


>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
 gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
          Length = 921

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 22/194 (11%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
            I +    +    A  R     A+DTET  L   R  +  +  S   G    I +A    
Sbjct: 326 DIILTWAQLDDWLARVRAAPLAAIDTETTSLDELRAEIVGISFSVEPGAAAYIPLAHDGP 385

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110
           + P           L   L D K  K+  + ++D  V     G+ VR  V  T + S + 
Sbjct: 386 DTPAQLPLAEVLARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGYVHDTMLQSYVL 444

Query: 111 RTYTNQHGLKDNLKELLGIN-IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
             +   HGL    +   G   IS      K  +   +S   +      Y+  D      +
Sbjct: 445 EVHKP-HGLASLAERHTGRTGISYEDLCGKGAKQIPFSQVPVDKA-AAYSCEDSDQTLDV 502

Query: 164 RLQFTEKLQRLGRS 177
                 +L+   + 
Sbjct: 503 HRVLWPQLEADEKL 516


>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
 gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
          Length = 928

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 19/167 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----MLVDEKREKI 78
           +  DTET  +      L  +           +     ++ A  L+        +E+  K+
Sbjct: 358 VCFDTETTNVDALEAELVGISFCWAAHKGHYLPFPKEKEAATKLIEQFRPFFENEQIAKV 417

Query: 79  FHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGIN------- 130
               ++D+ VL    GV V+  +F T IA  L      +H +    +  L          
Sbjct: 418 GQNLKYDLKVLQNY-GVEVQGALFDTMIAHYLLNP-DMRHNMDILSETYLNYTPIAIESL 475

Query: 131 ISKA-QQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           I K   Q S      +  DE  +YA  D      L+  F  ++ ++ 
Sbjct: 476 IGKGKAQRS---MRTVPIDEVKEYAVEDADVTWQLKNVFQSQMPQVN 519


>gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
 gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
          Length = 906

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               +  A DTET  L   R  +  +  +   G    + +A     AP           L
Sbjct: 324 LEAAELFAFDTETSSLDYMRAEVIGLSFAVEPGAAAYVPLAHDYPGAPPQLDRAMVLERL 383

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  + K+  + ++D  VL    G+ +R +   T + S +  +   +H +    + 
Sbjct: 384 RPLLEDPGKAKLGQHLKYDANVLLNH-GIMLRGIRHDTMLESYVLNSTATRHDMDSLAER 442

Query: 126 LLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            L            K  +   ++   + D   +YAA D      L      +L+
Sbjct: 443 YLDRKTLHYEDVAGKGAKQIPFARVSVEDA-CRYAAEDADVTLCLHRALWPRLE 495


>gi|299533476|ref|ZP_07046856.1| 3'-5' exonuclease [Comamonas testosteroni S44]
 gi|298718533|gb|EFI59510.1| 3'-5' exonuclease [Comamonas testosteroni S44]
          Length = 211

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           +VQL+     V ++++            +L  E   K+      D   L    G  +  +
Sbjct: 66  LVQLATAS-QVWLLQLHRPMA-LEVSRMVLAAEHICKVGFGLDNDKHSLPRRLGAPLINI 123

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAASDV 157
               + SR  R  Y    G++     +L  +   SK   +S+W+A +LS  Q +YAA+D 
Sbjct: 124 QD--LDSRFKRLGYGPSVGVRAAAALVLQQSFRKSKRTTTSNWAATELSPAQRRYAANDA 181

Query: 158 VHLHALRLQF 167
                +  + 
Sbjct: 182 HAPVVIYARL 191


>gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256]
 gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256]
          Length = 952

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 357 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 416

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 417 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 475

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D + +  ++    YAA D      L
Sbjct: 476 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIEQATE----YAAQDADFALRL 530

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 531 EAHLRAQMDAK 541


>gi|226509292|ref|NP_001146735.1| hypothetical protein LOC100280337 [Zea mays]
 gi|195625788|gb|ACG34724.1| 3-5 exonuclease family protein [Zea mays]
 gi|219888535|gb|ACL54642.1| unknown [Zea mays]
          Length = 217

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 20/134 (14%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI-------AVLFYTF 93
           ++QL  G     + +I A       L   L   +     H  RF           L    
Sbjct: 66  VLQLCVG-HRCLVFQIVAADYVPAALKAFLASPQ-----H--RFVGVVVDVDVERLRCDC 117

Query: 94  GVRVRPVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQ 149
            + V      + A+   L R +    GLK   +E++G+ I K      S+W    LS  Q
Sbjct: 118 NIVVNNTVDLRYAAADVLGRPHLRTAGLKILAREVMGVEIEKPKHLTCSEWD-RPLSQAQ 176

Query: 150 LQYAASDVVHLHAL 163
           ++YAA D    + +
Sbjct: 177 VRYAAIDAFVSYEV 190


>gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
 gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
          Length = 975

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 381 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 440

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 441 EQLDLQDVLGHLKPYLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 499

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 500 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 554

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 555 EAHLRAQMDEK 565


>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
 gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
          Length = 911

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 68/202 (33%), Gaps = 25/202 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  D  A DTET  L   +  L  V  +   G    + +A     AP+          L
Sbjct: 329 LQTADLFAFDTETTALDAMQAELVGVSFALEPGRAAYVPLAHVYPGAPDQLDRDRVLARL 388

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  R K+    ++D++VL     + +R +   T + S +  + T +H L    K 
Sbjct: 389 KPLLEDPGRPKVGQNLKYDMSVLARY-DIALRGIAHDTLLESYVLDS-TARHDLDSLAKR 446

Query: 126 LLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ---RLG 175
            L  +         K  +   +    L      YAA D      L   F  +L     L 
Sbjct: 447 FLDHDTIRFEDVAGKGAKQIGFDQVPLEQA-GPYAAEDAEVTLRLHRVFQPRLAAVPALE 505

Query: 176 RSDLATSCCNFLMDRAELDLLG 197
           R          +   + L+  G
Sbjct: 506 RL-YREIEMPLVPVLSRLERAG 526


>gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116]
 gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1]
 gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 879

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 22/197 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75
                 IA DTET GL  +  ++        +     + +          + +   +K  
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQSAKKAI 372

Query: 76  EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E IF      H  ++D  ++   FG+   +    T I + L +  + +  + D    L  
Sbjct: 373 EVIFNHFVIGHNLKYDFKIIQNNFGLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431

Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
                    + K +   ++++ +L     +YAA D        L F + L+     +LA 
Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLE-TPLLELAK 486

Query: 182 SC-CNFLMDRAELDLLG 197
           +C  +F+     ++  G
Sbjct: 487 NCEFDFIKIIMMMEENG 503


>gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568]
          Length = 937

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 335 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 394

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 395 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 453

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D + +  ++    YAA D      L
Sbjct: 454 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIEQATE----YAAQDADFALRL 508

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 509 EAHLRAQMDAK 519


>gi|323454533|gb|EGB10403.1| hypothetical protein AURANDRAFT_62671 [Aureococcus anophagefferens]
          Length = 3786

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 18/149 (12%)

Query: 18   RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKRE 76
            R V  +AVD E     P  + + ++Q+    G  D++ +   + + P  L  +L +E  E
Sbjct: 2922 RDVRRVAVDME-WRAQPLSN-IRVIQI----GVKDVVYLWRVKDSVPAGLAAILRNEGIE 2975

Query: 77   KIFHYGRFDIAVLFYTF-GVRVRP----VFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            KI    + DI  L   + GV V+     +    +A+   ++   +  L D + ELL   +
Sbjct: 2976 KIGVNFQGDITRLTKQYEGVEVKGEIIELSD--LANDTLKSQKRRWSLADLVMELLNRTL 3033

Query: 132  SKAQ----QSSDWSADDLSDEQLQYAASD 156
             K      +   W    L  +  QYAA+D
Sbjct: 3034 DKELGGGGRYGRWDEWPLDQDAQQYAAND 3062


>gi|264677843|ref|YP_003277749.1| 3'-5' exonuclease [Comamonas testosteroni CNB-2]
 gi|262208355|gb|ACY32453.1| 3'-5' exonuclease [Comamonas testosteroni CNB-2]
          Length = 214

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           +VQL+     V ++++            +L  E   K+      D   L    G  +  +
Sbjct: 69  LVQLATAS-QVWLLQLHRPMA-LEVSRMVLAAEHICKVGFGLDNDKHSLPRRLGAPLINI 126

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAASDV 157
               + SR  R  Y    G++     +L  +   SK   +S+W+A +LS  Q +YAA+D 
Sbjct: 127 QD--LDSRFKRLGYGPSVGVRAAAALVLQQSFRKSKRTTTSNWAATELSPAQRRYAANDA 184

Query: 158 VHLHALRLQF 167
                +  + 
Sbjct: 185 HAPVVIYARL 194


>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
 gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
          Length = 968

 Score = 52.7 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 60/190 (31%), Gaps = 27/190 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---------------- 60
           A+     A DTET  L P + +L    L+   G    + +   +                
Sbjct: 375 AKEQGFFAFDTETTSLDPLQAKLVGFSLALQPGKAAYVPLEHFEGGGDLLGGGRIVGQIE 434

Query: 61  --KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
             K    L  +L D+   KI    ++D  V+    G+ +R    T + S         H 
Sbjct: 435 TRKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIRCFDDTMLLSYALDAGALTHN 493

Query: 119 LKDNLKELLGINIS--KAQQS-----SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +    +  LG      K         + ++  DL    L YAA D      L      +L
Sbjct: 494 MDALSERWLGHKPIAYKDLTHNGKKITSFAQVDLKQATL-YAAEDADITLRLWQVLKPQL 552

Query: 172 QRLGRSDLAT 181
              G + +  
Sbjct: 553 VARGMTKVYE 562


>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
 gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
          Length = 931

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 17/177 (9%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAPNLVGMLVDEK 74
               +++DTET GL      L  +  +        I +        +    L  +L +E 
Sbjct: 356 QQKEVSMDTETTGLDANDAELVGLSFAYKAREAYYIAVPKHEKGILEFLEVLRPLLENEN 415

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGIN--- 130
             KI    ++D  ++   +G+ ++   F T +A  L    T +H +    +  LG     
Sbjct: 416 IRKIGQNLKYD-YIILKWYGIELKGEFFDTMLAHYLLDPDT-RHNMDVLSENYLGYTPIS 473

Query: 131 ----ISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
               I K +   +    D+   ++  YAA D      L+  F   L       LA  
Sbjct: 474 ITELIGKGKNQLN--MRDIDVAKVTDYAAEDADVTLQLQQVFEPMLIEAQAEKLAKE 528


>gi|159486093|ref|XP_001701078.1| hypothetical protein CHLREDRAFT_153314 [Chlamydomonas reinhardtii]
 gi|158271972|gb|EDO97780.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1156

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 44/177 (24%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------------------- 57
             +  DTE +      D+L +VQL  G   V ++++                        
Sbjct: 221 KVLGFDTEFVR-----DQLAVVQLCAGPH-VLLVQVPSCRQPASEQQQQQTKEKAQGGKE 274

Query: 58  -----AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA----SR 108
                A     P L  +L +    K       D  +++  FGV++R      +A      
Sbjct: 275 QPPWRAPFTLLPELKALLCNPCIPKAAAEAWQDALMVYMGFGVKLRGGLDLTVAVPPDHV 334

Query: 109 LTRTYTNQHGLKDNLKELL----GINISKAQQSSDWSADDLSDEQLQYAASD--VVH 159
             +   ++ GL D  +        +   K    + W +  L D+Q +YAA D  V +
Sbjct: 335 DLKRGRDKLGLFDIFRTFFAAADHVQKDKTINHTKWLSSRLDDKQKRYAALDAFVSY 391


>gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 478

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 15/134 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 346 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 405

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DEK  K+    ++D  VL    G+ +R + F T + S +  +   +H +      
Sbjct: 406 KPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDR 464

Query: 126 LLGINISKAQQSSD 139
            L     K     D
Sbjct: 465 WLKH---KTITFED 475


>gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50]
 gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50]
          Length = 904

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 11/119 (9%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
              +A+DTET  L   + RL  + ++   G    I +A     A +          L G 
Sbjct: 328 APLVALDTETTSLDEMQARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEVIARLRGW 387

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D  R K+ H+ ++D  V              T + + +  ++    GL D  +  LG
Sbjct: 388 LEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESH-RGVGLNDLAQRFLG 445


>gi|115625013|ref|XP_001204139.1| PREDICTED: similar to conserved hypothetical protein, partial
           [Strongylocentrotus purpuratus]
 gi|115634330|ref|XP_001186051.1| PREDICTED: similar to conserved hypothetical protein, partial
           [Strongylocentrotus purpuratus]
          Length = 94

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 23/88 (26%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNA---PNLVGMLVDEKREKI----------------- 78
           L +VQ+S  DG   +  +    +      +L  +L     +K+                 
Sbjct: 6   LTLVQISTWDGKAFLFDVFKNPQLLKGNSSLKQILERNSIKKVCRHPTSNLILSLYKNPD 65

Query: 79  ---FHYGRFDIAVLFYTFGVRVRPVFCT 103
               H  + D   L   FGV ++ VF T
Sbjct: 66  LPVIHDCKCDTHALHNEFGVILKNVFDT 93


>gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822]
 gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis]
          Length = 904

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 11/119 (9%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
              +A+DTET  L   + RL  + ++   G    I +A     A +          L G 
Sbjct: 328 APLVALDTETTSLDEMQARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEVIARLRGW 387

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D  R K+ H+ ++D  V              T + + +  ++    GL D  +  LG
Sbjct: 388 LEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESH-RGVGLNDLAQRFLG 445


>gi|169622866|ref|XP_001804841.1| hypothetical protein SNOG_14657 [Phaeosphaeria nodorum SN15]
 gi|111056729|gb|EAT77849.1| hypothetical protein SNOG_14657 [Phaeosphaeria nodorum SN15]
          Length = 279

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 24/166 (14%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
            R+ ++ +     T+  +           L  +L D +  K+F   R D   L+  +GV 
Sbjct: 62  ARIFLIDM----HTLGALAFTTPSSQGKTLKHVLEDSQITKVFFDVRNDSDALYAHYGVA 117

Query: 97  VRPVFCTKIASRLTRT----YTNQHGLKDNLKELL------------GINISKAQ---QS 137
           ++ V   ++     R          GL   +++              G  + K +     
Sbjct: 118 LQCVEDVQLMESAAREKTALRRTVIGLARCVEKNCSATSTWQAAKSRGEKLFKPELGGSY 177

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
             ++   +  + + Y A DV  L  LR  F +   +  R DL    
Sbjct: 178 EVFNQRPIPADIVAYCAGDVGCLVQLREVFCQGKGQEWR-DLVRDE 222


>gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS]
          Length = 904

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 11/119 (9%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
              +A+DTET  L   + RL  + ++   G    I +A     A +          L G 
Sbjct: 328 APLVALDTETTSLDEMQARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEVIARLRGW 387

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D  R K+ H+ ++D  V              T + + +  ++    GL D  +  LG
Sbjct: 388 LEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESH-RGVGLNDLAQRFLG 445


>gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
 gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
          Length = 466

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 63/196 (32%), Gaps = 51/196 (26%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----------GDGTVDIIRIAAGQKNA 63
           +C  R +     DTET GL+P RD +  VQ+            G+    ++        A
Sbjct: 266 DCPLRDLVYCVFDTETTGLIPHRDEI--VQIGAIRIVDGKLVEGETFDTLVDPGGPIPRA 323

Query: 64  PNLVGMLVDEKR--------------------EKIFHYGRFDIAVLFYT---FGVRV-RP 99
            + +  + D+                        + H   FD++ L       GV    P
Sbjct: 324 SSKIHGITDKMVMGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAFDHP 383

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           +  T + S +    T +H L D + E LGI I K  + +              A  D   
Sbjct: 384 IVDTVLVSAIIFGTTERHML-DVVCERLGIRIEKKDRHT--------------ALGDARV 428

Query: 160 LHALRLQFTEKLQRLG 175
                 +    L+  G
Sbjct: 429 TAEAMKRMLPLLEARG 444


>gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of
           Bemisia tabaci]
          Length = 939

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 5/111 (4%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKIF 79
           A D  T G+ P    L  +  +   GT   I +       Q     L  +       K+ 
Sbjct: 366 AFDIATTGMDPHLADLLGIAFAYQPGTAYYIALPPNKAAAQPFLALLQPLFQRTDVLKVG 425

Query: 80  HYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
           H  +  + V+         P+F T IA  L     + H L    ++ L   
Sbjct: 426 HNLKNALIVMQRHGLSIAPPLFDTMIAHGLVAADMDHH-LTTLSEQYLNHR 475


>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
 gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
          Length = 968

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 27/190 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA------------------A 58
           A+     A DTET  L P + +L    L+        + +                    
Sbjct: 375 AQEQGFFAFDTETTSLDPIQAKLVGFSLALQPEKAAYVPLEHVEGENDLLKGGRIVSQIE 434

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
            QK    L  +L D+   KI    ++D  V+    G+ +     T + S      T  H 
Sbjct: 435 TQKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIHCFDDTMLLSYALEAGTLTHN 493

Query: 119 LKDNLKELLGINIS--KAQQS-----SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           +    +  LG      K         + ++  DL    L YAA D      L      +L
Sbjct: 494 MNALSERWLGHKPIAYKDLTHNGKKITSFAEVDLKQATL-YAAEDADITLRLWQVLKPQL 552

Query: 172 QRLGRSDLAT 181
              G + +  
Sbjct: 553 VAQGMTRIYE 562


>gi|160900262|ref|YP_001565844.1| 3'-5' exonuclease [Delftia acidovorans SPH-1]
 gi|160365846|gb|ABX37459.1| 3'-5' exonuclease [Delftia acidovorans SPH-1]
          Length = 294

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 20/149 (13%)

Query: 21  DAIAVDTETLGLMP-RRDRLC--IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
             +  DTE+  L    +      +VQL+  D    ++++   Q  A     +L  E   K
Sbjct: 46  PVLGFDTESKPLFHAHQTDTGPHVVQLATCD-QAWLLQLHHAQARALA-ADVLASESICK 103

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI------ 131
                  D + L    GV +  V               +HG   ++     + +      
Sbjct: 104 AGFGLDHDRSALPGRLGVALHNVID-------LDRVFKRHGYASSVGVRAAVALVLGQNF 156

Query: 132 --SKAQQSSDWSADDLSDEQLQYAASDVV 158
             SK   +S+W+A  LS  Q  YAA+D  
Sbjct: 157 HKSKKISTSNWAAPQLSLAQRHYAANDAH 185


>gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802]
 gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802]
          Length = 972

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 20/120 (16%)

Query: 22  AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLVG 68
            +A DTET  L PR   L    C      G+ + DI  I  G               L  
Sbjct: 383 PVAWDTETTSLEPRNAELVGIGC----CWGEKSTDIAYIPTGHNKGNQLKKEAVLQALKP 438

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L  ++  K+F   +FD  + ++  G+ ++  VF T +AS +       H L D     L
Sbjct: 439 ILESDRYPKVFQNTKFDRLIFYHQ-GINLKGVVFDTLLASYVLHPEM-SHNLSDLCYRYL 496


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy]
          Length = 948

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 32/205 (15%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL-----SPGDGTVDIIRIAAGQKNA----- 63
           E A +    +A D ET GL        + Q+        +G    + +    K       
Sbjct: 372 EQAIKAGGVMAFDLETTGLDEM-----LAQVIGFSFCWEEGKSYYVPLVHETKELVDREQ 426

Query: 64  --PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120
               L   L   +   +    ++D  VL   +G+  + + F T +A+ L  + T+   + 
Sbjct: 427 VRSLLEEYLGSGRLSLVGQNIKYDYKVL-RQWGIMPKNIYFDTMVAAWLLDS-TSVFNMD 484

Query: 121 DNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              ++ L          + K +  SD     L    + Y A D      L   F+E L  
Sbjct: 485 YLAEKYLDYKTVHYTDIVPKDKLLSD---IPLEQA-VFYGAEDADVTFRLYKLFSELLGA 540

Query: 174 LGRSDLATS-CCNFLMDRAELDLLG 197
                L        L+  A ++L G
Sbjct: 541 RNLRSLLDEVEMPLLVIIANMELAG 565


>gi|299755113|ref|XP_001828437.2| hypothetical protein CC1G_04408 [Coprinopsis cinerea okayama7#130]
 gi|298411075|gb|EAU93429.2| hypothetical protein CC1G_04408 [Coprinopsis cinerea okayama7#130]
          Length = 622

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           R+ +VQL+  D  + +I+++A       L  +L D    K     + D    F  +   V
Sbjct: 168 RVALVQLAN-DEMILLIQVSAMHALPYKLTEILEDPSYIKAGVGIQGDALKFFNDWMANV 226

Query: 98  RPVFCTKIASRLT------RTYTNQHGLKDNLKELLGINISKAQ-QSSDWSADDLSDEQL 150
           R V    + +R          Y +  GL   ++      + K + + ++W    L+ E+ 
Sbjct: 227 RSVVDLSLLARSVDNARWKGKYNHPIGLARLVEVYHYRLLEKGKIRRTNWEK-ILNLEEQ 285

Query: 151 QYAASDVVHLHALRLQFTEK 170
            YAA+D    + L       
Sbjct: 286 SYAANDAHAGYTLYRHLMGM 305


>gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
 gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
          Length = 908

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 17/123 (13%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----------GQKNAPN 65
           + +    I++DTET  L     RL  + +S  +     I I A            +   N
Sbjct: 336 SLKKAKYISIDTETSSLDIYTARLIGISISFKEFEGYYIPIEARGKIYIEKHYIIQKFNN 395

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYT-FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
                 + K   I    +FD  +L    F     P F T IA+ L  T + +  L    +
Sbjct: 396 FFE--SNPKI--IGQNYKFDYKILKNNGFNPIP-PYFDTMIAAYLIDTNS-KVSLDFLAE 449

Query: 125 ELL 127
           + L
Sbjct: 450 KYL 452


>gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331]
          Length = 903

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 19/137 (13%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           +      + +   L   L D  + K+ H  +  + VL             T +A+ L + 
Sbjct: 372 LDPAELAEADEQALAAWLADPGQPKVLHNAKNALRVLPEQGWRLEGISMDTALAAYLVKP 431

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLHA 162
                 L     E LG  +         +    SD QL + A D             +  
Sbjct: 432 GRRSFALDALAVEYLGREL---------APAPASDGQLAFGADDRAEADALMAQARAVLD 482

Query: 163 LRLQFTEKLQRLGRSDL 179
           L   FT +L+ +G ++L
Sbjct: 483 LGDAFTTRLKEVGATEL 499


>gi|308191626|sp|B4G5C9|WRNXO_DROPE RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5'
           exonuclease
          Length = 355

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    + ++   +K    LV ++   K     
Sbjct: 160 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYVYQLTNLKKLPAALVALINHPKVR--L 216

Query: 80  H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F        +       +          +  L+     +    + 
Sbjct: 217 HGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMD 276

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +     ++
Sbjct: 277 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDLEQR 316


>gi|198451895|ref|XP_001358549.2| GA20513 [Drosophila pseudoobscura pseudoobscura]
 gi|308191627|sp|Q299L3|WRNXO_DROPS RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5'
           exonuclease
 gi|198131692|gb|EAL27690.2| GA20513 [Drosophila pseudoobscura pseudoobscura]
          Length = 356

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    + ++   +K    LV ++   K     
Sbjct: 161 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYVYQLTNLKKLPAALVALINHPKVR--L 217

Query: 80  H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F        +       +          +  L+     +    + 
Sbjct: 218 HGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMD 277

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +     ++
Sbjct: 278 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDLEQR 317


>gi|195145659|ref|XP_002013809.1| GL23198 [Drosophila persimilis]
 gi|194102752|gb|EDW24795.1| GL23198 [Drosophila persimilis]
          Length = 348

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    + ++   +K    LV ++   K     
Sbjct: 153 PMAFDMEWPF-SFQTGPGKSSVIQICVDEKCCYVYQLTNLKKLPAALVALINHPKVR--L 209

Query: 80  H--YGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F        +       +          +  L+     +    + 
Sbjct: 210 HGVNIKADFRKLQRDFPEVSADALIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMD 269

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +     ++
Sbjct: 270 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDLEQR 309


>gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97]
          Length = 879

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 22/197 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75
                 IA DTET GL  +  ++        +     + +          + +   +K  
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVSKQISLESAKKAI 372

Query: 76  EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E IF      H  ++D  ++   FG+   +    T I + L +  + +  + D    L  
Sbjct: 373 ELIFNHFVIGHNLKYDFKIIQNNFGLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431

Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
                    + K +   ++++ +L     +YAA D        L F + L+ +   +LA 
Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLE-IPLLELAK 486

Query: 182 SC-CNFLMDRAELDLLG 197
           +C  +F+     ++  G
Sbjct: 487 NCEFDFIKIIMMMEENG 503


>gi|4455316|emb|CAB36851.1| putative protein [Arabidopsis thaliana]
 gi|7268091|emb|CAB78429.1| putative protein [Arabidopsis thaliana]
          Length = 313

 Score = 52.3 bits (125), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 19/174 (10%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRR-----DRLCIVQLSPGDGTVDIIR 55
           M  I+V    +  +     +  + +D E       R      ++  VQ+       D++ 
Sbjct: 112 MQLIKV----LDTKRDESGIAFVGLDIE--WRPSFRKGVLPGKVATVQICVDSNYCDVMH 165

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYT 114
           I         L  ++ D    K+      D   LF+ +GV ++ V   + +A++      
Sbjct: 166 IFHSGIPQS-LQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGG-D 223

Query: 115 NQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDV---VHLHAL 163
            + GL    + L+   + K    +  +W    LS +QLQYAA+D     HL+ +
Sbjct: 224 KKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYKV 277


>gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491]
 gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491]
          Length = 938

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDAK 520


>gi|219116192|ref|XP_002178891.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409658|gb|EEC49589.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 655

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 52/201 (25%)

Query: 22  AIAVDTETLGLMPRRDRLCI--VQLS--------PGDGTVD--IIRIAAGQKNAP----- 64
            +A+DTE     P     C+  +Q++        P D  +   ++ +   +  A      
Sbjct: 464 VVAIDTEWY-TNPVDGSTCLATIQVAIRRTNAGDPNDSQILSWVVDLIGTRYEAETRERY 522

Query: 65  -----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP---VFCTK--IASRLTRTYT 114
                +LV  L+ E    +      D+ +L      R      V   +   A++      
Sbjct: 523 VEGCRDLVEELL-ENYVVLGFAVGHDLHILAEWV-ARPFNTNRVLDLQRLWAAK------ 574

Query: 115 NQHGLKDNLKELLGIN-------------ISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
              GL   ++    I              +SK +Q S+W+   L+  Q++YA  D   L 
Sbjct: 575 AMPGLAACVERYAVIESNCENECDIKRYCLSKDEQCSEWNRRPLTSSQIEYAGLDAAILM 634

Query: 162 ALRLQFTEKLQRLGRSDLATS 182
            L     E+ +   +      
Sbjct: 635 TL---LAERYREEQQWGKVDE 652


>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
 gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
          Length = 928

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 345 LQTAELFAFDTETDNLDYMLANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  + K+    ++D +VL     + ++ +   T + S +  +   +H +      
Sbjct: 405 KPILEDAAKAKVGQNLKYDASVLARY-DIELKGIKHDTMLESYIYNSVGGKHDMDSLALR 463

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q++      YAA D      L  +    +++      
Sbjct: 464 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDESLKT 523

Query: 180 ATSCCNF 186
                  
Sbjct: 524 VYEEIEM 530


>gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
 gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
          Length = 926

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 26/177 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------AGQKNAPNLVGM 69
            +    I +DTET  L P   +L  + ++   G    I +A         Q+ + +L   
Sbjct: 348 LQSCRQIGLDTETNSLDPMTAKLVGISMAFAAGDAVYIPVAHTLAEQLDWQEISGSLKPF 407

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D+   KI    ++D  +     G+ ++ +     +AS +  ++   H L D     LG
Sbjct: 408 LEDKNLAKIGQNLKYDQHIFKNH-GIDLQGIAGDAMLASYIVESHL-SHNLDDLAMRWLG 465

Query: 129 INI----------SKAQQSSDWSADDLSDEQ-LQYAASDVVHLHALRLQFTEKLQRL 174
           +            +K    +D     ++  Q  +YA  D      +      ++   
Sbjct: 466 LETISYESLCGKGAKQISFAD-----VNVAQATEYACQDADFALRIEQHLRTQMDAQ 517


>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
 gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
          Length = 934

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 15/138 (10%)

Query: 3   TIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           TI   E  + A  A  +    +A+DTET  L P R R+  +  +        + +     
Sbjct: 339 TIFTTE-QLDAWIARLQAAPLVAIDTETDSLDPMRARIIGISFAVQPLEAAYVPVGHDYP 397

Query: 62  NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110
            AP+          L   L D    K+    ++D  V     GV VR     T + S + 
Sbjct: 398 GAPDQLPLDEVLARLRPWLEDAGTRKVGQNIKYDSHVFANH-GVTVRGYAHDTMLESYVL 456

Query: 111 RTYTNQHGLKDNLKELLG 128
             +   HGL       LG
Sbjct: 457 EAHKP-HGLASLADRHLG 473


>gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 879

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 22/197 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75
                 IA DTET GL  +  ++        +     + +          + +   +K  
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQSAKKAI 372

Query: 76  EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E IF      H  ++D  ++   FG+   +    T I + L +  + +  + D    L  
Sbjct: 373 EVIFNHFVIGHNLKYDFKIIQNNFGLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431

Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
                    + K +   ++++ +L     +YAA D        L F + L+     +LA 
Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYISLRFYLYFLKNLE-TPLLELAK 486

Query: 182 SC-CNFLMDRAELDLLG 197
           +C  +F+     ++  G
Sbjct: 487 NCEFDFIKIIMMMEENG 503


>gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275]
          Length = 931

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDAK 520


>gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309]
 gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309]
          Length = 908

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 62/177 (35%), Gaps = 19/177 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +AV  E      R D   +V L+     + I  +    K    L  +L      
Sbjct: 333 ARAHSTLAVLVEGDMRPTRGDVTRLV-LASDKEALVIDPVELSPKQEEALGEVLATASSL 391

Query: 77  KIFHYGRFDIAVL----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            I H  +     L    +   GV     F T +A+ L       H L+D L  +LG+ I 
Sbjct: 392 -IVHDAKGARHALSSRGWTLGGVE----FDTMLAAYLAHPDQRSHKLEDVLSRVLGVVIE 446

Query: 133 KAQQSS-------DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + +  S       D  A   S  Q++ A     +LH L      +L+    + L T 
Sbjct: 447 EGEGDSEALFDLGDMGAGP-SAAQVR-AGKLAAYLHPLASTLRSRLEESSEAALLTD 501


>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
          Length = 928

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 18/187 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 345 LQTAELFAFDTETDNLDYMLANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 404

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D  + K+    ++D +VL     + ++ +   T + S +  +   +H +      
Sbjct: 405 KPILEDAAKAKVGQNLKYDASVLARY-DIELKGIKHDTMLESYIYNSVGGKHDMDSLALR 463

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L  +    +Q +    + L+  Q++      YAA D      L  +    +++      
Sbjct: 464 FLQHSCISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDESLKT 523

Query: 180 ATSCCNF 186
                  
Sbjct: 524 VYEEIEM 530


>gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
 gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
          Length = 915

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 25/177 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  + +A+DTET  L P + R+  +  +   G    + +A    +AP           L
Sbjct: 334 LQAAELVAIDTETDSLEPMKARIVGISFAVEPGRGAYVPLAHAGPDAPEQLPLDAVLARL 393

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
              L D  R K+    ++D  V     G+ +  V   T + S +   +   H L+   + 
Sbjct: 394 KPWLEDASRAKLGQNLKYDRHVFANA-GIALAGVRHDTMLESYVLEAHKP-HSLESLAER 451

Query: 126 LLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
            LG    K     D      + +   Q+      +Y+A D      +      +++ 
Sbjct: 452 HLGR---KGLSYEDLCGKGVNQIPFAQVDVARATEYSAEDSEMALHVHQVLWPEIEA 505


>gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 932

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 30/192 (15%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        + I +DTET  L     +L  + ++   G    I +      AP
Sbjct: 337 TTETQFAALLDKLSKAERIGIDTETTSLDAMNAQLVGISIAFEAGEAAYIPLGHSMTAAP 396

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +R +     +AS +  ++
Sbjct: 397 QQLDLQDTLGRLKPHLENGSLKKIGQNLKYDQHVFANY-GIALRGIAGDAMLASYIVESH 455

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQ-LQYAASDVVHLHA 162
              HGL +  +  LG+            +K    +D     ++ EQ  +YAA D      
Sbjct: 456 L-GHGLDELSERWLGLPTITYESLCGKGAKQISFAD-----VAVEQAAEYAAQDADFALR 509

Query: 163 LRLQFTEKLQRL 174
           L      ++   
Sbjct: 510 LEAHLRAQMDEK 521


>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
           bacterium]
          Length = 894

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 69/203 (33%), Gaps = 28/203 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A+D ET  L P +  +  + LS   G    I +A      P           L
Sbjct: 315 LKKSEIFALDLETTSLNPVQAHVVGISLSCEAGVACYIPLAHRYFGVPEQLDLDLVLKKL 374

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L D K +K+    ++D+ VL       V   F T +AS +      +H + D  ++ 
Sbjct: 375 KPLLEDPKLKKVGQNIKYDLIVLKSEGVNLVGVAFDTMLASYILNPSGRRHNMNDMARDY 434

Query: 127 LGINISK------------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           LG   +K                 D       +   +YAA D      L    +  LQ  
Sbjct: 435 LGYTTTKYKEVVGTASKEIGFDKVD------IELATEYAAEDADITWRLYENLSPLLQGD 488

Query: 175 GRSDLATSCCNFLMDRAELDLLG 197
               L       +   AE++L G
Sbjct: 489 DFKLLQELELPLIEVLAEMELHG 511


>gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
 gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
          Length = 976

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 77/208 (37%), Gaps = 37/208 (17%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---KNAPN----------LVGM 69
           +++DTET  L P    L  + L  G+   D+  I  G    K  PN          L   
Sbjct: 383 VSLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLSIEYVFSKLRNW 442

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + D K+EK     +FD  + F   G+ ++ V F T +A  L      +HGL +    L G
Sbjct: 443 IEDPKKEKALQNSKFDRQIFFNH-GLILKGVTFDTLLADYLLNNQ-EKHGLSEISFRLFG 500

Query: 129 ---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
                    +  +K     D     + +  + Y   DV     +   F E+  +  + +L
Sbjct: 501 FKPPSFKETVGKNKDFSFVD-----IDEASI-YCGYDVFLTFKIVKIFKERFSKE-KDEL 553

Query: 180 A----TSCCNFLMDRAELDLLGWENVDI 203
                          +++++ G   +DI
Sbjct: 554 IKLFEEIELPLEPVLSQMEMNGIT-IDI 580


>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
 gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
          Length = 908

 Score = 51.9 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 24/178 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      +  V  +   G    + +A     AP           L
Sbjct: 326 LQAAALFAFDTETTSLNYMDAEIVGVSFAVEPGKAAYVPVAHDYLGAPEQLSREHVLARL 385

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L ++  +K+    ++D  VL     + ++ + + T + S +  +  ++H +    + 
Sbjct: 386 KPLLENDGLKKVGQNLKYDANVLANY-DIALKGIAYDTMLESYVHNSTGSRHDMDTLAEL 444

Query: 126 LLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
            LG    K     D     A  L+  Q++      YAA D      L      K+   
Sbjct: 445 HLGH---KTIHFEDIAGKGAKQLTFNQIKLEEAGPYAAEDADITLRLHQALWPKVAEA 499


>gi|299768503|ref|YP_003730529.1| 3'-5' exonuclease [Acinetobacter sp. DR1]
 gi|298698591|gb|ADI89156.1| 3'-5' exonuclease [Acinetobacter sp. DR1]
          Length = 213

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+                    L  +L ++K+ K+    + D   +F+  G+ +   
Sbjct: 70  LIQLATAKKAYL---FHVNSSTLKFLQPILSNQKQIKVGFGLKND-KHIFHKKGIELESC 125

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
               +A   +   +T Q G++  +  L G  ++K++   +S+W+   L+ +Q+ 
Sbjct: 126 VD--LAKSFSHFGFTQQMGVQKAIALLFGQYLAKSKKVGTSNWARKPLTSQQIS 177


>gi|297800892|ref|XP_002868330.1| hypothetical protein ARALYDRAFT_493524 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314166|gb|EFH44589.1| hypothetical protein ARALYDRAFT_493524 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 286

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           ++  VQ+   +   D++ I         L  ++ D    K+      D   LF+ +GV +
Sbjct: 146 KVATVQICVDNNYCDVMHIVHSGIPQ-RLQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSI 204

Query: 98  RPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAA 154
           + V   + +A++       + GL    + L+   + K    +  +W    LS +QLQYAA
Sbjct: 205 KDVEDLSDLANQKIGGE-KKWGLASLTETLVCKELLKPNRIRLGNWEVYPLSKQQLQYAA 263

Query: 155 SDV---VHLHALRLQF 167
           +D     HL+ +    
Sbjct: 264 TDAYASWHLYQVLKDL 279


>gi|195644322|gb|ACG41629.1| hypothetical protein [Zea mays]
          Length = 202

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 6/150 (4%)

Query: 23  IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           + +D E      P ++ +  +QL  G  +  I ++         L   L D     +   
Sbjct: 49  VGLDVEWRPSFGPHQNPVATLQLCVG-HSCLIFQLLYADYVPGALAEFLGDRGIRFVGVG 107

Query: 82  GRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--S 137
              D   L    G+ V        + A R+ R    Q GL+  ++ ++G+N+ K Q+   
Sbjct: 108 VEADAERLSDDHGLVVANAEDLRXRXAERMXRPDLRQAGLRAXVQVVMGVNLVKPQRVTM 167

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           S W A  LS EQ++YA  D      +  + 
Sbjct: 168 SRWDASCLSYEQIKYACIDAFVSFEVARRL 197


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score = 51.9 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 12/186 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----AGQKNAPNLV-GMLVDEKREK 77
           + +D ET GL   +D +  +  +        + ++      +    NLV   L  E  + 
Sbjct: 352 VCIDFETTGLDTFKDTIIGISFAIKSNEAFYLDLSGRTKIDKDKCMNLVFDTLEKEDIKV 411

Query: 78  IFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           I H  +++  ++    G  +  + F T +A+ L      ++ + D     L  N  K   
Sbjct: 412 IGHNLKYEYKMM-RAIGKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYAD 470

Query: 137 SSDWSADDLSDEQL----QYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRA 191
            +D +   L D  L    +YA  D          F   L+     DL        +   A
Sbjct: 471 LTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLEDLFFNIEMPLVSVLA 530

Query: 192 ELDLLG 197
           +++  G
Sbjct: 531 DMEFDG 536


>gi|195625840|gb|ACG34750.1| hypothetical protein [Zea mays]
          Length = 202

 Score = 51.5 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 6/150 (4%)

Query: 23  IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           + +D E      P  + +  +QL  G  +  I ++         L   L D     +   
Sbjct: 49  VGLDVEWRPSFGPHXNPVATLQLCVG-HSCLIFQLLYADYVPGALAEFLGDRGIRFVGVG 107

Query: 82  GRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ--S 137
              D   L    G+ V        + A R+ R    Q GL+  ++ ++G+N+ K Q+   
Sbjct: 108 VEADAERLSDDHGLVVANAEDLRGRAAERMNRPDLRQAGLRALVQVVMGVNLVKPQRVTM 167

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           S W A  LS EQ++YA  D      +  + 
Sbjct: 168 SRWDASCLSYEQIKYACIDAFVSFEVARRL 197


>gi|42572893|ref|NP_974543.1| WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3'-5' exonuclease/
           nucleic acid binding / protein binding [Arabidopsis
           thaliana]
 gi|75327902|sp|Q84LH3|WEX_ARATH RecName: Full=Werner Syndrome-like exonuclease
 gi|28195109|gb|AAO33765.1| Werner Syndrome-like exonuclease [Arabidopsis thaliana]
 gi|38603882|gb|AAR24686.1| At4g13870 [Arabidopsis thaliana]
 gi|332657939|gb|AEE83339.1| Werner Syndrome-like exonuclease [Arabidopsis thaliana]
          Length = 288

 Score = 51.5 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 19/178 (10%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRR-----DRLCIVQLSPGDGTVDIIR 55
           M  I+V    +  +     +  + +D E       R      ++  VQ+       D++ 
Sbjct: 112 MQLIKV----LDTKRDESGIAFVGLDIE--WRPSFRKGVLPGKVATVQICVDSNYCDVMH 165

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYT 114
           I         L  ++ D    K+      D   LF+ +GV ++ V   + +A++      
Sbjct: 166 IFHSGIPQS-LQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGG-D 223

Query: 115 NQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDV---VHLHALRLQF 167
            + GL    + L+   + K    +  +W    LS +QLQYAA+D     HL+ +    
Sbjct: 224 KKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYKVLKDL 281


>gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594]
          Length = 938

 Score = 51.5 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDEK 520


>gi|159487409|ref|XP_001701715.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280934|gb|EDP06690.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 795

 Score = 51.5 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           SDW A  LS  Q+ YAA D   L  L  +   +L
Sbjct: 316 SDWEARPLSARQMTYAAQDAHVLVRLYGELRNRL 349


>gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 485

 Score = 51.5 bits (123), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 54/198 (27%)

Query: 14  ECAARYVDAIAVDTETLGLMPRR-DRLCIVQLSP-------------GDGTVDI---IRI 56
           +C    +  +  DTET GL+P R D +C  Q++               D  V+    I +
Sbjct: 283 DCKLGDLKYVIFDTETTGLLPERGDEVC--QIAACRVVNGKMVKTEMFDTLVNPGRPIPL 340

Query: 57  AAGQK---------NAPNLVGM------LVDEKREKIFHYGRFDIAVLFY---TFGVRV- 97
           +A            +AP+ +          D     I H   FD+A  +      G R  
Sbjct: 341 SATNIHGITDAMVADAPDFLTAGRAFHGFADGAVL-IAHNAPFDMAFFYRKQAEIGARFD 399

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
            PV  T + S +    T QH L    +  L + I +  + +              A  D 
Sbjct: 400 HPVLDTVLLSAVIYGQTEQHSLDALAER-LNVTIPEEARHT--------------ALGDA 444

Query: 158 VHLHALRLQFTEKLQRLG 175
           +    + L+    LQ  G
Sbjct: 445 LATTEVFLKLLPMLQAKG 462


>gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
          Length = 929

 Score = 51.5 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 334 TTEAQFAALLDKLAQADKIGIDTETTSLDAMNAALVGISIAFQAGKAVYIPVGHSLTAAP 393

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 394 EQLDLQYVLGYLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 452

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 453 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 507

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 508 EAHLRAQMDAK 518


>gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797]
 gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797]
          Length = 900

 Score = 51.5 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 66/205 (32%), Gaps = 29/205 (14%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--------AAGQKNAPNL 66
              +  D   VD ET GL P    +    +S        I +           Q    +L
Sbjct: 312 ALLKEQDEFCVDLETTGLKPAEAEIVGWAISWEKHRGFYIPVEGPSGQLALDPQYVLEHL 371

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D +        ++D+ VL    GV ++ V     +AS L       H L    + 
Sbjct: 372 KPILEDPEILITNQNIKYDMVVLMR-VGVFLQGVSIDPMVASYLISAGERGHSLDKLSER 430

Query: 126 LLGINI---------SKAQQS---SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            L   +          K Q+     D       D+  +YA  D      L     ++L+ 
Sbjct: 431 YLNHTMIPISELIGSGKQQKKMFEVD------VDKVAEYAVEDAEIAWQLSRILQDELKH 484

Query: 174 LGRSDLATSCCNFLMDR-AELDLLG 197
            G  +L       L+   AE++  G
Sbjct: 485 AGLWELYWELERPLISILAEMEFTG 509


>gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9]
 gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9]
          Length = 932

 Score = 51.5 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 19/164 (11%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75
           DTET  L P + R+  V  +   G    + +A                  L   L +   
Sbjct: 360 DTETDSLDPMQARIVGVSFAVTPGEAAYVPLAHVAPGVEPQLDRDRVLAQLKPWLENPAA 419

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K+     +D  VL    G+R+  V   T +   +  ++  +H +    +  LG+   K 
Sbjct: 420 AKVLQNANYDRHVLANH-GIRLAGVADDTMLMDYVLASH-ERHNMDAMAERELGLATIKY 477

Query: 135 QQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQ 172
           +      A  +   ++       YAA D      LR     KL 
Sbjct: 478 EDICGKGARQIGFAEVDLDTATRYAAEDADVTLRLRDVLAGKLD 521


>gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 958

 Score = 51.5 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 363 TTEAQFAALLDKLSQADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 422

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 423 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 481

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 482 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 536

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 537 EAHLRAQMDAK 547


>gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
 gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
          Length = 933

 Score = 51.5 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 338 TTEAQFAALLDRLSQADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 397

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 398 EQLDLQDVLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 456

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D + +  ++    YAA D      L
Sbjct: 457 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIEQATE----YAAQDADFALRL 511

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 512 EAHLRAQMDAK 522


>gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
 gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
          Length = 1021

 Score = 51.5 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 43/133 (32%), Gaps = 18/133 (13%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
             +IAA +     L  +L      KI    +F  AVL    G+ ++     ++ S     
Sbjct: 483 PDQIAA-RDALEALRPILESPGVLKIGFNIKF-TAVLLAQHGITLQNADDVQLMSYALDA 540

Query: 113 YTNQHGLKDNLKELLGINISKAQQS-----SDWSADDLSDEQLQ------YAASDVVHLH 161
             + HGL    +  LG    K         S      LS +Q+       YAA D     
Sbjct: 541 GRHAHGLDALAETWLGH---KTLSYGEVIGS--GKAKLSFDQVAIDRATCYAAEDADVAL 595

Query: 162 ALRLQFTEKLQRL 174
            L      +L   
Sbjct: 596 RLWRVLKPRLVAE 608


>gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
 gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
          Length = 1045

 Score = 51.5 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 72/214 (33%), Gaps = 42/214 (19%)

Query: 22  AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLVG 68
            +A DTET  L PR   L    C      G    D+  I  G K            +L  
Sbjct: 382 PVAWDTETTSLEPRDAELVGIGC----CWGKNMEDVAYIPTGHKTDKNLDKVTVLESLKP 437

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL- 127
           +L   +  K+F   +FD  V            F T +AS +      +H L++     L 
Sbjct: 438 VLESSEYPKVFQNSKFDRLVFRCQGIKLTGVFFDTMLASYVLNPEA-KHSLEEIYIRYLR 496

Query: 128 --GINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             GIN+       SK Q  +D   D L      Y  + V     L  +   +L++  ++ 
Sbjct: 497 NVGINLQSYQDVVSKNQTIAD--LDILKVA--DYCGTQVWVTFQLVEKLRTELEKADKNK 552

Query: 179 ---------LATSCCNFLMDRAELDLLGWENVDI 203
                    L           AE++  G   +DI
Sbjct: 553 STEKSLYRLLVDVEQPLEPVLAEMEFQGI-RIDI 585


>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score = 51.5 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 43/197 (21%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------------- 62
            V  +AVDTET  L      L  +     +G    I +   ++                 
Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGISFGLANGDACYIPLTHKEQVTLEPQQSDLFAEQAEA 413

Query: 63  ------------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103
                                L  +L +   +KI    ++D+ +     GV+V  V F T
Sbjct: 414 ETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAFDT 472

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157
            + S    + T +H + +     LG    + ++ +    + L+ +++      QYAA D 
Sbjct: 473 MLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDIASQYAAEDA 531

Query: 158 VHLHALRLQFTEKLQRL 174
                L    + +L++ 
Sbjct: 532 DVTMKLHQVLSPELEKA 548


>gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399]
          Length = 931

 Score = 51.5 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +   + +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDSMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +     LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSGRWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDAK 520


>gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013]
          Length = 930

 Score = 51.5 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +   + +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDSMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +     LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDEK 520


>gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S]
 gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S]
          Length = 928

 Score = 51.5 bits (123), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 66/191 (34%), Gaps = 39/191 (20%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCI------VQLSPGDGTVDIIRIAAGQKN------ 62
            A      +AVDTET  L       C+      V L+ G      I +  G K+      
Sbjct: 338 AAVHAEGLVAVDTETDMLD------CVSCALVGVSLAVGPNAACYIPVGHGGKDMFAEKP 391

Query: 63  --------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
                      L  +L D+   KI    ++DI VL    G+ + P   T + S       
Sbjct: 392 DQLPLPLVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAPYDDTIVMSFDLDAGQ 450

Query: 115 N--QHGLKDNLKELLG-INIS-KA------QQSSDWSADDLSDEQLQYAASDVVHLHALR 164
           +   HG+ +  +  L  + IS K        Q S ++   L     +YAA D      L 
Sbjct: 451 SLAGHGMDEAARVHLNHVCISFKDVCGTGRSQIS-FAEVPLDKA-TEYAAEDADVTLRLW 508

Query: 165 LQFTEKLQRLG 175
             F  ++   G
Sbjct: 509 RLFKSRIANEG 519


>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score = 51.5 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 49/200 (24%)

Query: 19  YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64
            V  +AVDTET  L      L      +   + GD     +         P         
Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLTHKEQVTLEPQQSDLFAEQ 410

Query: 65  -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100
                                   L  +L +   +KI    ++D+ +     GV+V  V 
Sbjct: 411 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVA 469

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154
           F T + S    + T +H + +     LG    + ++ +    + L+ +++      QYAA
Sbjct: 470 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASQYAA 528

Query: 155 SDVVHLHALRLQFTEKLQRL 174
            D      L      +L++ 
Sbjct: 529 EDADVTMKLHQVLAPELEKA 548


>gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score = 51.5 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 49/200 (24%)

Query: 19  YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64
            V  +AVDTET  L      L      +   + GD     +         P         
Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLMHKEQVTLEPQQSDLFAEQ 410

Query: 65  -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100
                                   L  +L +   +KI    ++D+ +     GV+V  V 
Sbjct: 411 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVA 469

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154
           F T + S    + T +H + +     LG    + ++ +    + L+ +++      QYAA
Sbjct: 470 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASQYAA 528

Query: 155 SDVVHLHALRLQFTEKLQRL 174
            D      L      +L++ 
Sbjct: 529 EDADVTMKLHQVLAPELEKA 548


>gi|147902392|ref|NP_001084849.1| exonuclease 3'-5' domain-containing protein 1 [Xenopus laevis]
 gi|82237110|sp|Q6NRD5|EXD1_XENLA RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
           AltName: Full=Exonuclease 3'-5' domain-like-containing
           protein 1
 gi|47124003|gb|AAH70821.1| Exdl1 protein [Xenopus laevis]
          Length = 444

 Score = 51.5 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 21/150 (14%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
           +L  +Q +          +  G K   N L  +L D+   K+ H  R+   +L + +G+ 
Sbjct: 137 KLSWLQFATRSRVYLFDVLVLGSKVFKNGLQMVLEDKGILKVIHDCRWLGDILSHQYGII 196

Query: 97  VRPVFCTKIA-----SRLTRTYTNQHGLKDN---LKELLGINISK----AQQSS------ 138
           +  VF T++      S  T  +   HG +     L   L +  SK    A + +      
Sbjct: 197 LNNVFDTQVGDVYLFSMETGGFLP-HGTRTLEECLIHHLSMLPSKVSFLAHRQTLTKEYH 255

Query: 139 D-WSADDLSDEQLQYAASDVVHLHALRLQF 167
           D W    +    L+  + +V +L  LR   
Sbjct: 256 DIWFDRPMDPTLLKLLSLEVTYLMPLRSAM 285


>gi|148227808|ref|NP_001081838.1| Werner syndrome ATP-dependent helicase homolog [Xenopus laevis]
 gi|29428101|sp|O93530|WRN_XENLA RecName: Full=Werner syndrome ATP-dependent helicase homolog;
           AltName: Full=Exonuclease WRN; AltName:
           Full=Focus-forming activity 1; Short=FFA-1
 gi|3420291|gb|AAC63512.1| focus forming activity 1 [Xenopus laevis]
          Length = 1436

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 16/142 (11%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY--GRF-----DIAVLF 90
           ++ ++Q+   +    +  I+        L  +L DE   K+     G       D  +  
Sbjct: 90  KVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYELKL 149

Query: 91  YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDE 148
             F         +++A++  R    +      +K L    +   K+ + S+W    L+++
Sbjct: 150 KGFIEL------SEMANQKLRC-KEKWTFNGLIKHLFKEQLYKRKSYRCSNWDIFLLTED 202

Query: 149 QLQYAASDVVHLHALRLQFTEK 170
           Q  YAA+D      +  +    
Sbjct: 203 QKLYAATDAYAGLLIYKKLEGM 224


>gi|262373686|ref|ZP_06066964.1| 3'-5' exonuclease [Acinetobacter junii SH205]
 gi|262311439|gb|EEY92525.1| 3'-5' exonuclease [Acinetobacter junii SH205]
          Length = 204

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 16/156 (10%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAA 58
           I+  +  +  E   + V     DTE+     +G         ++QLS  +    + ++  
Sbjct: 30  IQTLDQCLQIEAELKSVQVFGFDTESKPTFKVGEKSTGPH--LIQLSSLE-NAYLFQVNP 86

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR-TYTNQH 117
                  L  +L +E++ K+    + D +      G+    +    +A   +   Y  Q 
Sbjct: 87  EI--LAFLKPILENEQQLKVGFGLKNDASGFRRK-GIHPNGLID--LAKCFSNFGYNTQV 141

Query: 118 GLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
           G++  +  L      K++   +S+WS   LS +Q+ 
Sbjct: 142 GVQTAIALLFQRYFPKSKKISTSNWSVKQLSLQQIN 177


>gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
          Length = 879

 Score = 51.2 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 22/187 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75
                 IA DTET GL  +  ++        +     + +          + +   +K  
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQSAKKAI 372

Query: 76  EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E IF      H  ++D  ++   FG+   +    T I + L +  + +  + D    L  
Sbjct: 373 ELIFNHFVIGHNLKYDFKIIQNNFGLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431

Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
                    + K +   ++++ +L     +YAA D        L F + L+     +LA 
Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLEAP-LLELAK 486

Query: 182 SC-CNFL 187
           +C  +F+
Sbjct: 487 NCEFDFI 493


>gi|70987206|ref|XP_749082.1| 3'-5' exonuclease/helicase (Wrn) [Aspergillus fumigatus Af293]
 gi|66846712|gb|EAL87044.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus fumigatus
           Af293]
 gi|159123147|gb|EDP48267.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus fumigatus
           A1163]
          Length = 419

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 26/183 (14%)

Query: 39  LCIVQLSPGDGTVD----IIRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDIAVLFYT 92
           + ++Q++  +        + + A   ++  +P+L  +L   +  K     + D   L   
Sbjct: 211 VSLIQIANAERIALFQIALFKPARRPEDFISPSLRKILESSEITKAGVAIKADCTRLKNF 270

Query: 93  FGVRVRPVFCTKIASRLTRT--------YTNQHGLKDNLKELLGINISKAQ--QSSDWSA 142
            G+ VR +F      +L +               L + ++E  G+ ++K    +  DW+ 
Sbjct: 271 LGINVRGIFELSHLYKLVKYCQSDPALINRRSVNLSEQVEEHFGLPLAKDDDVRCGDWTT 330

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD--LLGWEN 200
             L+  Q+QYAA+D      L      K + L  +         L   AELD  +   E+
Sbjct: 331 A-LNYRQVQYAATDSYACLCLFNTMDAKRRALTPTPP-------LPAHAELDQPIRLVED 382

Query: 201 VDI 203
           +D+
Sbjct: 383 LDV 385


>gi|302838751|ref|XP_002950933.1| hypothetical protein VOLCADRAFT_91414 [Volvox carteri f.
           nagariensis]
 gi|300263628|gb|EFJ47827.1| hypothetical protein VOLCADRAFT_91414 [Volvox carteri f.
           nagariensis]
          Length = 484

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           WS   L+ E  +YAA DV +LH L    + ++ R 
Sbjct: 23  WSVRPLTRELCEYAAVDVRYLHLLAEALSPRMNRE 57


>gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703]
 gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703]
          Length = 938

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 35/218 (16%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLAQADKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V      + +  +   + +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-DIALNGIAGDSMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIVQATE----YAAQDADFALRL 509

Query: 164 RLQF-----TEKLQRLGRSDL--ATSCCNFLMDRAELD 194
                     ++L+   + +L  A        +  ++D
Sbjct: 510 EAHLRAQMDDKQLEMYEKMELPVAQVLFEMERNGVQID 547


>gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
          Length = 976

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 37/208 (17%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------QKNAPNLVGM 69
           +++DTET  L P    L  + L  G+   D+  I  G             +     L   
Sbjct: 383 VSLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLSIEDVFSKLRNW 442

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + D ++EK     +FD  + F   G+ ++ V F T +A  L      +HGL +    L G
Sbjct: 443 IEDPRKEKALQNSKFDRQIFFNH-GLDLKGVTFDTLLADYLLNNQ-EKHGLSEISFRLFG 500

Query: 129 ---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
                    +  +K     D     +      Y   DV     +   F E+  +  + +L
Sbjct: 501 FKPPSFKETVGKNKDFSFVDIGEASI------YCGYDVFLTFKIVKIFKERFSKE-KDEL 553

Query: 180 A----TSCCNFLMDRAELDLLGWENVDI 203
                          +++++ G   +DI
Sbjct: 554 IKLFEEIELPLEPVLSQMEMNGIT-IDI 580


>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 957

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 49/200 (24%)

Query: 19  YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64
            V  +AVDTET  L      L      +   + GD     +         P         
Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLTHKEQVTLEPQQSDLFAEQ 410

Query: 65  -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100
                                   L  +L +   +KI    ++D+ +     GV+V  V 
Sbjct: 411 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVA 469

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154
           F T + S    + T +H + +     LG    + ++ +    + L+ +++      QYAA
Sbjct: 470 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASQYAA 528

Query: 155 SDVVHLHALRLQFTEKLQRL 174
            D      L      +L++ 
Sbjct: 529 EDADVTMKLHQVLAPELEKA 548


>gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
 gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
          Length = 928

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A          I +DTET  L      L  + ++   G    I +      AP
Sbjct: 333 TTEAQFAALLDKLSQAGKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 392

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 393 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 451

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D + +  ++    YAA D      L
Sbjct: 452 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIEQATE----YAAQDADFALRL 506

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 507 DAHLRAQMDAK 517


>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 919

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 49/200 (24%)

Query: 19  YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64
            V  +AVDTET  L      L      +   + GD     +         P         
Sbjct: 316 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLTHKEQVTLEPQQSDLFAEQ 372

Query: 65  -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100
                                   L  +L +   +KI    ++D+ +     GV+V  V 
Sbjct: 373 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVEGVA 431

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154
           F T + S    + T +H + +     LG    + ++ +    + L+ +++      QYAA
Sbjct: 432 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTLDKIAIDVASQYAA 490

Query: 155 SDVVHLHALRLQFTEKLQRL 174
            D      L      +L++ 
Sbjct: 491 EDADVTMKLHQVLAPELEKA 510


>gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase
 gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5]
          Length = 829

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 22/180 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKI 78
           +  +A D+ET  L  R   L  V +S  +     I      + A   L  +L  E    +
Sbjct: 132 IGPVAFDSETSALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILDSENHTIV 191

Query: 79  FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127
           FH  +FD+    Y  G+        R +  T +   +       HGLK    +       
Sbjct: 192 FHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 251

Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
              + K           +  D++ D +  D    YAA D      L   F  K+++  + 
Sbjct: 252 DFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKL 311


>gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35]
 gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35]
          Length = 855

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 22/180 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKI 78
           +  +A D+ET  L  R   L  V +S  +     I      + A   L  +L  E    +
Sbjct: 158 IGPVAFDSETSALYCRDGYLLGVSMSHQEYQGVYIDSDCLTEVAVYYLQKILDSENHTIV 217

Query: 79  FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127
           FH  +FD+    Y  G+        R +  T +   +       HGLK    +       
Sbjct: 218 FHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 277

Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
              + K           +  D++ D +  D    YAA D      L   F  K+++  + 
Sbjct: 278 DFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATLRLHNFFLPKIEKNEKL 337


>gi|224000055|ref|XP_002289700.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974908|gb|EED93237.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 2068

 Score = 51.2 bits (122), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 30/158 (18%)

Query: 22   AIAVDTETLGLMPRRD-RLCI------VQLSPGDGTVDIIRIAAGQKNAPN----LVGML 70
             +  DTE++   P    R  +      VQ S     +    +  G   A +    L  +L
Sbjct: 1814 VLGFDTESISKPPWCPERSSLPDGPATVQFSTPTTAIVFQLLHCGDGTASHAPACLRDVL 1873

Query: 71   VDEKREKIFHYGRFDIAVLFYTFGVRVRPV--------------FCTKIASRLTRTYTNQ 116
             +    K       D   L+      +                 F      R+     + 
Sbjct: 1874 NNPLVIKTGVAIEDDAKELYQWSKESLENATQNPQHTLIDMRSRFD---LGRILPGTKHV 1930

Query: 117  HGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQY 152
             GLK    E+LG++ISK++    S+W   +LS++Q+ Y
Sbjct: 1931 SGLKTIALEILGVHISKSKKLSMSNWGKRNLSEKQIAY 1968


>gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196]
          Length = 938

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +   + +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDSMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +     LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDEK 520


>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
          Length = 962

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKI 78
           I+ DTET GL P    L  +      G    +   A      +   N   +  +     +
Sbjct: 389 ISFDTETTGLDPNEAELVGLSFCITKGEAYYVPCPADRNECIQLLNNFQPLFNNASITWV 448

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDN-LKELLG 128
               ++D+ +L +        +F T +A  +                 G +   + EL+G
Sbjct: 449 GQNIKYDLLMLKWYGFELQGNIFDTMLAHYVIEPDGKSSMDLLSAKFLGYQPVSITELIG 508

Query: 129 INISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL 174
               K Q     +  D+  E++ +YAA D      L+  F   +++ 
Sbjct: 509 KK-GKGQG----NMRDIEIEKIKEYAAEDADITLQLKNVFLPLIKKE 550


>gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826]
          Length = 878

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 22/191 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM----LVDEKREK- 77
           +A DTET G+  +  ++     S  D     + +A     AP  + +        +  K 
Sbjct: 318 VAFDTETTGVDSKSAKIVGFSFSFNDEDAYYVPVAHNYLGAPKQIDLKFATWAVGQIYKG 377

Query: 78  --IFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN---- 130
             I    ++D  ++    G+        T I + L+   +   G+    K L   +    
Sbjct: 378 CVIGQNLKYDFEIVKNNLGLNPPANFKDTMILAWLSDPNS-SVGMDALAKRLYDYDTIKF 436

Query: 131 ---ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA-TSCCNF 186
              + K Q   D     L +   +YAA D          F   L       LA      F
Sbjct: 437 EDVVKKGQTFGD---VPLENA-AKYAAEDAWITLKFYKTFQNTLDP-NLLALADMHEFPF 491

Query: 187 LMDRAELDLLG 197
           ++   +++  G
Sbjct: 492 ILTLFDMEQNG 502


>gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 907

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 5/120 (4%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLV 71
           AE  A+ +    VDT  LG     +    V L+  DG           + +       L 
Sbjct: 339 AEHGAQPLGVATVDTWALGTGSVTE----VALAASDGKAAWFDPTELDEADETAFRSWLS 394

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           D  R K+FH  +  + VL             T +A+ L +       L     E L   +
Sbjct: 395 DPDRPKVFHNAKGAMRVLAEHGWSVAGVGMDTALAAYLVKPGRRSFDLDALSLEYLHREL 454


>gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102]
 gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102]
          Length = 930

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 27/177 (15%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVG 68
             D I +DTET  L      L  + ++   G    I +      AP           L  
Sbjct: 350 QADTIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGRLKP 409

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELL 127
            L +   +KI    ++D  V      + +  +   + +AS +  ++   HGL +  +  L
Sbjct: 410 HLENPALKKIGQNLKYDQHVFANY-DIALNGIAGDSMLASYIIESHL-GHGLDELSERWL 467

Query: 128 GINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           G+            +K    +D +    ++    YAA D      L      ++   
Sbjct: 468 GLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRLEAHLRAQMDAK 520


>gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916]
 gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916]
          Length = 1007

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 38/204 (18%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI--IRIAAGQKNAPN-------------- 65
            +AVDTET  L P + +L  V +  G    D+  I +      AP+              
Sbjct: 400 PVAVDTETSDLNPFKAQLVGVGVCWGADLKDLAYIPVGHMAPAAPDGEDAAGEPEQLALD 459

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L   L      K     ++D  +L          V  T +A    R    +HGL 
Sbjct: 460 AVLQALAPWLASSDHPKALQNAKYDRLILLRHGLTLGGVVMDTLLA-DYLRDAAAKHGLD 518

Query: 121 DNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              +   GI           +K  ++S ++A  +    L Y A DV     L L   ++L
Sbjct: 519 LMAQRDYGITPTLFTDLVGKAKDGKASSFAAVPVDQAAL-YCAMDVHLTRRLALDLRQQL 577

Query: 172 QRLGRSDLATSCCNFLMDRAELDL 195
             +G           L+++ EL L
Sbjct: 578 TSMG------EQLPALLEQVELPL 595


>gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5]
          Length = 825

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 22/180 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKI 78
           +  +A D+ET  L  R   L  V +S  +     I      + A   L  +L  E    +
Sbjct: 128 IGPVAFDSETSALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILDSENHTIV 187

Query: 79  FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127
           FH  +FD+    Y  G+        R +  T +   +       HGLK    +       
Sbjct: 188 FHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 247

Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
              + K           +  D++ D +  D    YAA D      L   F  K+++  + 
Sbjct: 248 DFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKL 307


>gi|308191624|sp|B4M401|WRNXO_DROVI RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5'
           exonuclease
          Length = 330

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    + +++  ++    LV +L   K     
Sbjct: 135 PLAFDMEWPF-SFQTGPGKSSVIQICVEERCCYVYQLSKLKRIPAALVALLNHSKVR--L 191

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 192 HGVNIKADFRKLERDFPEVAAEPLIEKCIDLGVWCNEVCETGGRWSLERLANFIAKKAMD 251

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +     ++
Sbjct: 252 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDIEQR 291


>gi|195395252|ref|XP_002056250.1| GJ10837 [Drosophila virilis]
 gi|194142959|gb|EDW59362.1| GJ10837 [Drosophila virilis]
          Length = 323

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    + +++  ++    LV +L   K     
Sbjct: 128 PLAFDMEWPF-SFQTGPGKSSVIQICVEERCCYVYQLSKLKRIPAALVALLNHSKVR--L 184

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 185 HGVNIKADFRKLERDFPEVAAEPLIEKCIDLGVWCNEVCETGGRWSLERLANFIAKKAMD 244

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +     ++
Sbjct: 245 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRDIEQR 284


>gi|316974026|gb|EFV57565.1| putative exonuclease mut-7-like protein [Trichinella spiralis]
          Length = 576

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            L D+    LG  +SK+++ S+W    L + Q+QYAA D   + ++  +  +
Sbjct: 508 SLNDHCFVYLGYWLSKSERMSNWQRRPLREMQMQYAALDAYSVISICDRLED 559


>gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 22/180 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKI 78
           +  +A D+ET  L  R   L  V +S  +     I      + A   L  +L  E    +
Sbjct: 158 IGPVAFDSETSALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILDSENHTIV 217

Query: 79  FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127
           FH  +FD+    Y  G+        R +  T +   +       HGLK    +       
Sbjct: 218 FHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 277

Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
              + K           +  D++ D +  D    YAA D      L   F  K+++  + 
Sbjct: 278 DFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKL 337


>gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5]
 gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 22/180 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKI 78
           +  +A D+ET  L  R   L  V +S  +     I      + A   L  +L  E    +
Sbjct: 158 IGPVAFDSETSALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILDSENHTIV 217

Query: 79  FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127
           FH  +FD+    Y  G+        R +  T +   +       HGLK    +       
Sbjct: 218 FHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 277

Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
              + K           +  D++ D +  D    YAA D      L   F  K+++  + 
Sbjct: 278 DFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFFLPKIEKNEKL 337


>gi|260223224|emb|CBA33572.1| hypothetical protein Csp_B19730 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 205

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 24/170 (14%)

Query: 11  IPAECAARYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           + A    R   A   DTE+     +G +       ++QLS       + ++   +  A  
Sbjct: 45  LAALDQLRSARAWGFDTESKPTFKVGELSDGPH--VLQLSTP-QRAWVFQLHDPECRA-V 100

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGL 119
              ++      K       D   + +  GV          VF  +        Y    G+
Sbjct: 101 AAQLMALPGVVKAGFGLGDDRKRILHKLGVEPVGVLELNHVFREQ-------GYRKDMGV 153

Query: 120 KDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           K  +  L       SK   +S+W+A  L++ QL YAA+D      +    
Sbjct: 154 KGAVAVLFHQRFIKSKKAATSNWAAPRLTEAQLVYAANDAYAAIRVYDAL 203


>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 900

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 73/207 (35%), Gaps = 32/207 (15%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65
           +AR    +A+D       P    +C V L+   G    + +      AP           
Sbjct: 321 SARAAGRLALDVLATSREPMSAHVCGVALACEPGQAVYVPLGHRYLGAPAQLSMSDIDAV 380

Query: 66  LVGMLVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
           +  +L D +  K+ H  +F ++ +L +  G+     F T +AS L         L +  +
Sbjct: 381 MGPLLADPELPKVGHDVKFCEVILLRHRIGLVGVS-FDTMLASYLLDPEGKNQ-LHELAE 438

Query: 125 ELLGINI-------SKAQQSSDWSADDLSDEQL----QY--AASDVVHLHALRLQFTEKL 171
             LG  +        K +  +      L + +L     Y  A +DV    +L  +   +L
Sbjct: 439 RELGAKMQTLDEVAPKRRGQA---QRALDEIELGEASSYGAAFADVA--LSLTDRLRPRL 493

Query: 172 QRLGRSD-LATSCCNFLMDRAELDLLG 197
           +     D L           AE++L G
Sbjct: 494 RAEKLEDLLVQIELPLSAVLAEMELTG 520


>gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013]
          Length = 983

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 27/179 (15%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
               + I +DTET  L      L  + ++   G    I +      AP           L
Sbjct: 393 LSQAEKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGHL 452

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
              L +   +KI    ++D  V     G+ +  +     +AS +  ++   HGL +  + 
Sbjct: 453 KPYLENPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESHL-GHGLDELSER 510

Query: 126 LLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            LG+            +K    +D +    ++    YAA D      L      ++   
Sbjct: 511 WLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRLEAHLRAQMDEK 565


>gi|322712295|gb|EFZ03868.1| 3'-5' exonuclease [Metarhizium anisopliae ARSEF 23]
          Length = 281

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 71/212 (33%), Gaps = 40/212 (18%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDIIRIAA 58
           M  I     D+P E       ++  D E   L      + I+QL   P + T  I     
Sbjct: 44  MNNI----EDLPKE-----PPSLYFDIEGDNLSRH-GTIAILQLYVMPINATYLIDVYTL 93

Query: 59  GQK-------NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111
           G K       N   L  +L      K+F   R D   L   F +++  +   ++    TR
Sbjct: 94  GDKCFSTPGGNGRTLKDILEFSSIPKVFFDVRNDSDALHGHFKIKLAGIQDLQLMELATR 153

Query: 112 TYTNQH--GLKDNLKELLGINIS----------KAQ--------QSSD-WSADDLSDEQL 150
           +++ +   GL   ++      I           K           S D +    L  + +
Sbjct: 154 SFSKRCVNGLSKCIERDGSFTIDEKLVWMETKKKGLLLFAPEEGGSYDIFKQRPLPKDIV 213

Query: 151 QYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            Y A DV  L  L   +  KL +  R+ +  +
Sbjct: 214 LYCAQDVQILPRLWSYYNRKLSKKWRTKMLDA 245


>gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76]
 gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385]
          Length = 983

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 381 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 440

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 441 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 499

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 500 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 554

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 555 EAHLRAQMDEK 565


>gi|195108811|ref|XP_001998986.1| GI24264 [Drosophila mojavensis]
 gi|308191614|sp|B4K934|WRNXO_DROMO RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5'
           exonuclease
 gi|193915580|gb|EDW14447.1| GI24264 [Drosophila mojavensis]
          Length = 329

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    + +++  +K    LV ++   K     
Sbjct: 134 PMAFDMEWPF-SFQTGPGKSSVIQICVDERCCYVYQLSNLKKIPAALVALINHPKVR--L 190

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  V   P+        +          +  L+     +    + 
Sbjct: 191 HGVNIKADFRKLARDFPEVAAEPLIEKCVDLGVWCNEVCETGGRWSLERLANFIAKKAMD 250

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +  +  ++
Sbjct: 251 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREIEQR 290


>gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14]
 gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14]
          Length = 937

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDAK 520


>gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7]
 gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7]
          Length = 855

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 22/180 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGT-VDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           +  IA D+ET  L  R   L  V +S  +   V I   +  +     L  +L  +  + +
Sbjct: 158 IGPIAFDSETSALYARDGYLLGVSMSHQEYQGVYIDSDSITEVAVHYLQKILDSKNHQIV 217

Query: 79  FHYGRFDIAVLFYTFGVRV------RPVFCTKIASRLTRTYTNQHGLKDNLKELL----- 127
           FH  +FD+    Y  G+        R +  T +   +       HGLK    +       
Sbjct: 218 FHNLKFDMHFYSYHLGLSFEKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMKYTDMGDY 277

Query: 128 GINISK---------AQQSSDWSADDLS-DEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
              + K           +  D+S D +  D    YAA D      L   F  K+++  + 
Sbjct: 278 DFELDKFKEDYCKAHKIKKEDFSYDLIPFDIMWPYAAKDTDATLRLHNFFLPKIEKNEKL 337


>gi|148747811|ref|YP_001285777.1| DNA polymerase [Phormidium phage Pf-WMP3]
 gi|146230044|gb|ABQ12452.1| DNA polymerase [Phormidium phage Pf-WMP3]
          Length = 363

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 22  AIAVDTETLGLMPRRD---RLCIV--Q-LSPGDGTVDIIRIAAGQKNAPNL-VGMLVDEK 74
            + +D E+  L  + D   R+ ++  Q L+          +    +   +L V +  D  
Sbjct: 9   PVVLDIESDDLSAQYDVDTRVYLIGVQFLADYGLYAAGDYVYGSLEEMRDLCVSLANDTD 68

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
              + H   FD+  L    G+ ++  FCT++A+    T+  +   +++L  L G+ + 
Sbjct: 69  VTFVIHNASFDVPAL-RLRGIPIKRYFCTQVAA---HTWHPKSSEENSLDSLTGMKLD 122


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 22/197 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75
                 IA DTET GL  +  ++        +     + +          + +   +K  
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAI 372

Query: 76  EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E IF      H  ++D  ++   F +   +    T I + L +  + +  + D    L  
Sbjct: 373 EVIFNHFVIGHNLKYDFKIIQNNFDLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431

Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
                    + K +   ++++ +L     +YAA D        L F + L+     +LA 
Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLE-TPLLELAK 486

Query: 182 SC-CNFLMDRAELDLLG 197
           +C  +F+     ++  G
Sbjct: 487 NCEFDFIKIIMMMEENG 503


>gi|307565057|ref|ZP_07627570.1| 3'-5' exonuclease domain protein [Prevotella amnii CRIS 21A-A]
 gi|307346226|gb|EFN91550.1| 3'-5' exonuclease domain protein [Prevotella amnii CRIS 21A-A]
          Length = 153

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGVRVR 98
           +Q+S             G  N+  ++ +L D    K+    H    D  +L         
Sbjct: 2   LQVSTHKECFLFRLNIIGMTNS--IISLLEDITIPKVGISLHD---DFHMLHKRISFNPG 56

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
                +    +     N   L+     + G  I K +Q ++W   +L+D+Q QYA+ D  
Sbjct: 57  YFIDLQ--DCVKDIGINDLSLQKIYANIFGKKIVKREQLTNWENIELTDKQKQYASIDAW 114

Query: 159 HLHALRLQFTEKLQRLGRSDLATSC 183
               L  +  ++L++ G  +L  + 
Sbjct: 115 ACINLYERI-KELKQTGDYNLIKND 138


>gi|30682626|ref|NP_193123.2| WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3'-5' exonuclease/
           nucleic acid binding / protein binding [Arabidopsis
           thaliana]
 gi|11121455|emb|CAC14871.1| exonuclease [Arabidopsis thaliana]
 gi|332657938|gb|AEE83338.1| Werner Syndrome-like exonuclease [Arabidopsis thaliana]
          Length = 285

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 19/173 (10%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRR-----DRLCIVQLSPGDGTVDIIR 55
           M  I+V    +  +     +  + +D E       R      ++  VQ+       D++ 
Sbjct: 112 MQLIKV----LDTKRDESGIAFVGLDIE--WRPSFRKGVLPGKVATVQICVDSNYCDVMH 165

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLTRTYT 114
           I         L  ++ D    K+      D   LF+ +GV ++ V   + +A++      
Sbjct: 166 IFHSGIPQS-LQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGG-D 223

Query: 115 NQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDV---VHLHA 162
            + GL    + L+   + K    +  +W    LS +QLQYAA+D     HL+ 
Sbjct: 224 KKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYK 276


>gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701]
 gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701]
          Length = 997

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 68/221 (30%), Gaps = 51/221 (23%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------- 65
            A      IA+DTET  L P +  L  V L  G+G+ D+  I  G +             
Sbjct: 376 AATDPDQPIALDTETTSLNPFQAELVGVGLCWGEGSSDLAYIPIGHQPPSPAPSADLLTP 435

Query: 66  ------------------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
                                   L   L   +  K     ++D  +L          V 
Sbjct: 436 ASAEPPADSAVLSQQLPLDQVLTALAPWLESARHPKTLQNAKYDRLILLRHGLSLEGVVM 495

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAA 154
            T +A    R    +HGL+   +   G         ++K +      A        +Y A
Sbjct: 496 DTLLA-DYLRDANAKHGLEVLAERNFGFTPTSFSELVAKGETF----AAVPIAAAARYCA 550

Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
            DV     L      +LQ+LG           L+D+ EL L
Sbjct: 551 MDVHVTWRLTPLLRGQLQQLG------EALPKLLDQVELPL 585


>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
          Length = 968

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 29/193 (15%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRL---CI-VQ-----------LSPGDGTVD---IIRI 56
             A+     + DT+T+ L P + +L    + +Q           ++  +  +    I+  
Sbjct: 373 LEAQEQGYFSFDTKTISLDPMQAKLVGFSLALQPGKAAYVPLEHVAEEENLLGGGRIVPQ 432

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              QK    L  +L ++   KI    ++D  V+     + +     T + S       + 
Sbjct: 433 IETQKALALLKPILENQAVLKIGQNIKYDWLVMKQY-NIVMCSFDDTMLLSYALEAGIST 491

Query: 117 HGLKDNLKELLGIN-IS-KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFT 168
           HG+    K  LG   IS K    S      +S  Q+       YAA D      L     
Sbjct: 492 HGMDVLSKRWLGHKPISYKDLTHS--GRKIVSFAQVDLKQATLYAAEDADITLRLWQVLK 549

Query: 169 EKLQRLGRSDLAT 181
            +L     + +  
Sbjct: 550 PQLVAQKMTKIYE 562


>gi|240278412|gb|EER41918.1| 3'-5' exonuclease/helicase [Ajellomyces capsulatus H143]
          Length = 947

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 26/152 (17%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQK-------NAPNLVGMLVDEKREKIFHYGRFDIAVL 89
           D + ++QL+     + I  +A            +P L  +L      K+    R D   L
Sbjct: 746 DNVSVIQLAS-KERIAIFHLALFNPANSLQHLLSPTLKRILESPDIVKVGVAIRADCTRL 804

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKELLGINISKA--QQSSDW 140
           +   G+R   +       ++ + + N          L   ++E LG+ + K    +   W
Sbjct: 805 YKFLGIRTNNICEVSRLHKVVKHHLNPKLIDKRLVNLAQQVEEHLGLPLDKDPEIRCGGW 864

Query: 141 SADDLSDEQLQ--YAASDVVHLHALRLQFTEK 170
           S   L+  Q+Q  YAA        L      K
Sbjct: 865 SKK-LNYRQVQYPYAA------LQLFHVLEAK 889


>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 965

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 23/202 (11%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQK 61
           T+R  E        A+     AVDTET GL P    +    ++   G    + +   G  
Sbjct: 364 TVRTAEALQKWISTAQEAGICAVDTETDGLDPLAANIVGFSIATAPGKACYVPLKHEGTL 423

Query: 62  NAPNLVGMLVD------------EKREKIFHYGRFDIAVLFYTFGVRVRPVF---CTKIA 106
            AP    + VD            +   KIFH  +FD+ +L +  G+ +  +     T + 
Sbjct: 424 EAPTGEQLAVDAALKLLAPLLQDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLI 482

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHL 160
           S       +  G+ +     L          +    + +   Q+      +YAA D    
Sbjct: 483 SYSQSAGLHGQGMDELSNLHLNHTPITYDSVTGTGRNRVPFAQVPVETATKYAAEDADVT 542

Query: 161 HALRLQFTEKLQRLGRSDLATS 182
             L       L+      L   
Sbjct: 543 LRLWYVLHPTLRTNKALALYEQ 564


>gi|219128242|ref|XP_002184326.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404127|gb|EEC44075.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 311

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 46/185 (24%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGD-----GTVDIIRIAAGQKNA-------PNLV 67
            + +D E  TL L  R D   ++QL+  D     G   + ++    K+          L+
Sbjct: 102 VLGMDVEYATLELDIRGDLPAMLQLASPDPTGPVGLFWLDKLPNHGKSILHDGEAYKPLL 161

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVR----PVF-------------CTKIASRLT 110
            +L     EK+      D+  L   +GV       P F              T++A R  
Sbjct: 162 SILASSDIEKVGVGLTSDVRHLLDWWGVSGAATYSPYFIANTVDISEVYSSDTRVADR-- 219

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQ------SSDWSADDLSDEQLQYAASDVVHLHALR 164
                   L++  + +L + + K +        S W A+ L+ +  +YAA+D      + 
Sbjct: 220 -------SLQEMCESVLQLRLRKRKSISRNKKRSHWRAEVLTKQMKEYAANDAACAVEVY 272

Query: 165 LQFTE 169
           L    
Sbjct: 273 LSLCA 277


>gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone
           ASNC3046]
          Length = 976

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 25/140 (17%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------QKNAPNLVGM 69
           +++DTET  L P    L  + L  G+   D+  I  G             +     L   
Sbjct: 383 VSLDTETNSLNPINAELVGIGLCLGEENDDLFYIPLGHQTKKGTSNQLSIEDVFSKLRNW 442

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + D K+EK     +FD  + F   G+ ++ V F T +A  L      +HGL +    L G
Sbjct: 443 IEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTFDTLLADYLLNNQ-EKHGLSEISFRLFG 500

Query: 129 ---------INISKAQQSSD 139
                    +  +K     D
Sbjct: 501 FKPPLFKETVGKNKDFSFVD 520


>gi|221067820|ref|ZP_03543925.1| 3'-5' exonuclease [Comamonas testosteroni KF-1]
 gi|220712843|gb|EED68211.1| 3'-5' exonuclease [Comamonas testosteroni KF-1]
          Length = 214

 Score = 50.8 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 14/164 (8%)

Query: 12  PAECAARYVDAIAVDTET-----LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL 66
            A  A      +  DTE+     +G         +VQL+     V ++++          
Sbjct: 37  AAFQAMNAEPVLGFDTESKPIFNIGQQDNGPH--LVQLATAS-QVWLLQLHRPMA-LEVS 92

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR-TYTNQHGLKDNLKE 125
             +L  E   K+      D   L    G  +  +    + SR  R  Y    G++     
Sbjct: 93  RMVLAAEHICKVGFGLDNDKHSLPRRLGAPLINIQD--LDSRFKRLGYGPSVGVRAAAAL 150

Query: 126 LLGINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           +L  +   SK   +S+W+A +LS  Q +YAA+D      +    
Sbjct: 151 VLQQSFRKSKRTTTSNWAAAELSSAQRRYAANDAHAPAVIYAHL 194


>gi|261190752|ref|XP_002621785.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis SLH14081]
 gi|239591208|gb|EEQ73789.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis SLH14081]
          Length = 1112

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 25/191 (13%)

Query: 3    TIRVHEGDIPAECAARYV---DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIR 55
            T+        +E  A++      + +D E            D + ++QL+     + +  
Sbjct: 820  TVHYCTSLQTSERVAQHFLSETVVGLDLEWKAQASTRDALVDNVSMIQLAS-KERIAVFH 878

Query: 56   IA-------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
            +A            +P L  +L   +  K+    R D   L+   G++   +       +
Sbjct: 879  LALFNPANSPQHLVSPTLKRLLESPELVKVGVAIRADCTRLYKFLGLQTTNLCEVSRLHK 938

Query: 109  LTRTYTNQ-------HGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAASDVVH 159
            + + + N          L + ++E LG+ + K    +   WS   L+  Q+QY A+D   
Sbjct: 939  VVKHHLNPKLINKRLVNLAEQVEEHLGLPLDKDPEIRCGGWSKK-LNYRQVQYVATDPYA 997

Query: 160  LHALRLQFTEK 170
               L      K
Sbjct: 998  ALQLFHVLEAK 1008


>gi|125525535|gb|EAY73649.1| hypothetical protein OsI_01538 [Oryza sativa Indica Group]
          Length = 288

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 37  DRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLV-GMLVDEKREKIFHYGRFDIAVLFYTF 93
             + I+QL  GD +  I+++   AG +  P LV  +L D     +      + A L   +
Sbjct: 139 PTVAILQLCAGD-SCLILQLLHVAGARRVPPLVGDLLADPSVRLVGIGIGENAAKLADGY 197

Query: 94  GVRVRPVFCTKIAS--RLTRTYT-NQHGLKDNLKELLGINISK--AQQSSDWSADDLSDE 148
           GVR       +     RL R     + GLK  ++E+LG+ + K      SDW    L   
Sbjct: 198 GVRCAAPVDLEDVCDRRLGRLPGARRLGLKGYVREVLGLTMEKPMDVTRSDWERRHLDAA 257

Query: 149 QLQYAAS 155
           Q++YA S
Sbjct: 258 QVRYACS 264


>gi|239614893|gb|EEQ91880.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis ER-3]
          Length = 1112

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 25/191 (13%)

Query: 3    TIRVHEGDIPAECAARYV---DAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIR 55
            T+        +E  A++      + +D E            D + ++QL+     + +  
Sbjct: 820  TVHYCTSLQTSERVAQHFLSETVVGLDLEWKAQASTRDALVDNVSMIQLAS-KERIAVFH 878

Query: 56   IA-------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
            +A            +P L  +L   +  K+    R D   L+   G++   +       +
Sbjct: 879  LALFNPANSPQHLVSPTLKRLLESPELVKVGVAIRADCTRLYKFLGLQTTNLCEVSRLHK 938

Query: 109  LTRTYTNQ-------HGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAASDVVH 159
            + + + N          L + ++E LG+ + K    +   WS   L+  Q+QY A+D   
Sbjct: 939  VVKHHLNPKLINKRLVNLAEQVEEHLGLPLDKDPEIRCGGWSKK-LNYRQVQYVATDPYA 997

Query: 160  LHALRLQFTEK 170
               L      K
Sbjct: 998  ALQLFHVLEAK 1008


>gi|262280380|ref|ZP_06058164.1| 3'-5' exonuclease [Acinetobacter calcoaceticus RUH2202]
 gi|262258158|gb|EEY76892.1| 3'-5' exonuclease [Acinetobacter calcoaceticus RUH2202]
          Length = 213

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+                    L  +L + K+ K+    + D   +F+  G+ +   
Sbjct: 70  LIQLATEQKAYL---FHVNSSTLKFLQPILSNPKQIKVGFGLKND-KHIFHKKGIELEGC 125

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
               +A   +   +  Q G++  +  L    ++K++   +S+W+   LS +Q+ 
Sbjct: 126 VD--LAKGFSHFGFKQQLGVQKAVALLFEQYLAKSKKVGTSNWARKPLSSQQIS 177


>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
 gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
          Length = 944

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 5   RVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
            +   ++     A+    + +AVDTET  L     ++  +  S   G    I +     +
Sbjct: 350 TIFTWELLDSWLAKIEAAELVAVDTETTSLDEMLAQIVGISFSVTPGEAAYIPLTHDYPD 409

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTR 111
           AP           L   L +    K+  + ++D  V     G+ V+     T + S +  
Sbjct: 410 APAQLPRDEVLARLKPWLENPAIAKLGQHVKYDRHVFANH-GIEVQGYAHDTMLQSYVLE 468

Query: 112 TYTNQHGLKDNLKELLG 128
            +   HGL    +  +G
Sbjct: 469 VHKP-HGLASLAERHVG 484


>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
 gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
          Length = 934

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A+DTET  L P R RL  + LS   G    + +A     AP           L   L + 
Sbjct: 361 AIDTETDSLDPMRARLVGISLSVAPGEAAYLPLAHAYPGAPEQLPMAEVLERLRPWLENA 420

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            + K+    ++D  V     GV +R     T + S +   +   H L   +   LG +
Sbjct: 421 DKPKLGQNAKYDRHVFANA-GVTIRGYAHDTLLESYVIEAHKP-HSLDSLVSRHLGRD 476


>gi|260550793|ref|ZP_05825000.1| 3'-5' exonuclease [Acinetobacter sp. RUH2624]
 gi|260406103|gb|EEW99588.1| 3'-5' exonuclease [Acinetobacter sp. RUH2624]
          Length = 213

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+                    L  +L ++K+ K+    + D   +F+  G+++   
Sbjct: 70  LIQLATEHKAYL---FHVNSSTLKFLQPILSNQKQLKVGFGLKND-KHIFHKKGIKLESC 125

Query: 101 FC-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
              TK  S     + +Q G++  +  L G  ++K++   +S+W+   L+ +Q+ 
Sbjct: 126 VDLTKSFSHF--GFKHQMGVQKAVALLFGQYLAKSKKVGTSNWAQKPLTSQQIS 177


>gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76]
          Length = 916

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 314 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 373

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 374 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 432

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 433 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 487

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 488 EAHLRAQMDEK 498


>gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58]
 gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58]
          Length = 938

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDEK 520


>gi|149450029|ref|XP_001520465.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 479

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGR--FDIAVLFYTFGV 95
           LC +Q++             G +   N L  +L D    K+ H  R   D   L + +G+
Sbjct: 234 LCWLQVATTARVYLFDIHLLGHRAFENGLRLVLEDRGVLKVTHDCRWLSD--CLAHQYGI 291

Query: 96  RVRPVFCTKI 105
            +  VF T++
Sbjct: 292 VLANVFDTQV 301


>gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136]
          Length = 930

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDEK 520


>gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
 gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
          Length = 990

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 59/189 (31%), Gaps = 34/189 (17%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG---------------- 59
                  +A+DTET  L P +  L  + ++ G+G  ++  I  G                
Sbjct: 381 CTDPAAPVALDTETTALNPFQAELVGLGVAWGEGLTELAYIPIGHQPPVADDLLSETPTP 440

Query: 60  ------QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                  +    L   L   +  K     ++D  +L          V  T +A    R  
Sbjct: 441 PRQLPLDEVLTALAPWLASAEHPKALQNAKYDRLILLRHGLPLGGVVMDTLLA-DYLRDA 499

Query: 114 TNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
             +HGL+   +  LG         + K    +   A  +    L Y   DV     L   
Sbjct: 500 NAKHGLEVLAQRNLGFTPTSYGELVPKGASFA---AVPVEAAAL-YCGMDVHVTRRLSPL 555

Query: 167 FTEKLQRLG 175
              +L+ LG
Sbjct: 556 LRRQLEELG 564


>gi|327352334|gb|EGE81191.1| 3'-5' exonuclease/helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1064

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 18/145 (12%)

Query: 42   VQLSPGDGTVDIIRIA-------AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94
            +QL+     + +  +A            +P L  +L   +  K+    R D   L+   G
Sbjct: 866  IQLAS-KERIAVFHLALFNPANSPQHLVSPTLKRLLESPELVKVGVAIRADCTRLYKFLG 924

Query: 95   VRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKELLGINISKAQ--QSSDWSADDL 145
            ++   +       ++ + + N          L + ++E LG+ + K    +   WS   L
Sbjct: 925  LQTTNLCEVSRLHKVVKHHLNPKLINKRLVNLAEQVEEHLGLPLDKDPEIRCGGWSKK-L 983

Query: 146  SDEQLQYAASDVVHLHALRLQFTEK 170
            +  Q+QY A+D      L      K
Sbjct: 984  NYRQVQYVATDPYAALQLFHVLEAK 1008


>gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH]
 gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH]
          Length = 905

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 21/196 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-------PNLVGM 69
            +    +++DTET        ++  + +S  +     I I   +K +             
Sbjct: 333 LKKTSYVSIDTETTSTNVYEAQILGISVSFKEFESYYIPIETKEKKSIEREYITQKFNEF 392

Query: 70  LVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
              + +  I    +FD  +   + F     P F T IA+ +    T +  L    ++ L 
Sbjct: 393 FKTKPKL-IGQNYKFDYKIFTRHGFNAIP-PYFDTMIAAYVIDPNT-KVSLDFLSEKYL- 448

Query: 129 INISK--AQQSSDWSADDLSDEQLQ----YAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             + K    Q        L D  L+    YAA D      L   F +KL+      L   
Sbjct: 449 --MHKNIKYQEIVSQNGTLKDIPLETVSNYAAEDADITFRLFKIFAKKLKEDNLESLMID 506

Query: 183 -CCNFLMDRAELDLLG 197
               F     E++  G
Sbjct: 507 VEMPFSNVITEMEENG 522


>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
 gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
          Length = 922

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 65/199 (32%), Gaps = 27/199 (13%)

Query: 13  AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65
               AR       A+DTET  L   R  +  V  S   G    I +A    +AP      
Sbjct: 336 DGWLARLKAAPLAALDTETTSLDELRAEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLA 395

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGL 119
                L   L D    K+  + ++D  V     G++VR     T + S +   +   HGL
Sbjct: 396 EVLERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYAHDTMLQSYVLEVHKP-HGL 453

Query: 120 KDNLKELLGIN-IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               +   G   IS      K  +   ++   +      Y+  D      +      +LQ
Sbjct: 454 ASLAERHTGRTGISYEDLCGKGAKQIPFAQVPVDKA-AAYSCEDSDQTLDVHRVLWPQLQ 512

Query: 173 R----LGRSDLATSCCNFL 187
                 G  +L  +C   L
Sbjct: 513 ADDKLRGIYELEMACSETL 531


>gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945]
          Length = 930

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDEK 520


>gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 932

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 18/158 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R  +  A DTET  L      L  V  +  +G    + +A    +AP           L
Sbjct: 349 LRSAEVFAFDTETDSLDYMVANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWALAQL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D ++ K+    ++D ++L     + ++ +   T +AS +  +   +H +      
Sbjct: 409 KPILEDAQQAKVGQNLKYDASILARY-DINMQGIAHDTMLASYVYNSVGGKHDMDSLALR 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDV 157
            +  +    +Q +    + L+  Q+       YAA D 
Sbjct: 468 FMQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDA 505


>gi|195037591|ref|XP_001990244.1| GH19231 [Drosophila grimshawi]
 gi|308191616|sp|B4JF25|WRNXO_DROGR RecName: Full=Werner Syndrome-like exonuclease; AltName: Full=3'-5'
           exonuclease
 gi|193894440|gb|EDV93306.1| GH19231 [Drosophila grimshawi]
          Length = 331

 Score = 50.4 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 22  AIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
            +A D E           +  ++Q+   +    + +++   K    L  ++   K     
Sbjct: 136 PMAFDMEWPF-SFQTGPGKSSVIQICVDERCCYVYQLSKLNKIPAALAALINHPKVR--L 192

Query: 80  H--YGRFDIAVLFYTF-GVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           H    + D   L   F  +   P+        +          +  L+     +    + 
Sbjct: 193 HGVNIKADFRKLERDFPEMSAEPLIEKCVDLGVWCNQVCETGGRWSLERLANFIAKKAMD 252

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K++  + S W    L + QL YAA DV     +  +  ++
Sbjct: 253 KSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYREIEQR 292


>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
 gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
          Length = 956

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 38/149 (25%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------------ 65
           +  + IAVDTET  L      L  +     +G    I +A   + A              
Sbjct: 352 QQANLIAVDTETDSLDAMTAELVGISFGLENGEACYIPLAHVHEVAEAEEQAQADLFAEP 411

Query: 66  -----------------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-F 101
                                  L  +L +    KI    ++D+ +     G++V+ V F
Sbjct: 412 KATGKTSWHRLPDQLNREDCLARLKPVLENADIRKIGQNLKYDLTIFANH-GIQVQGVAF 470

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            T + S +  + T +H + D  +  LG  
Sbjct: 471 DTMLESYVLNS-TGRHNMDDLAERYLGHQ 498


>gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972]
 gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972]
          Length = 932

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 18/158 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            R  +  A DTET  L      L  V  +  +G    + +A    +AP           L
Sbjct: 349 LRSAEVFAFDTETDSLDYMVANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWVLAQL 408

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D ++ K+    ++D ++L     + ++ +   T +AS +  +   +H +      
Sbjct: 409 KPILEDAQQAKVGQNLKYDASILARY-DINMQGIAHDTMLASYVYNSVGGKHDMDSLALR 467

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDV 157
            +  +    +Q +    + L+  Q+       YAA D 
Sbjct: 468 FMQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDA 505


>gi|118091603|ref|XP_001234592.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 359

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102
           ++             G +   N L  +L D+   K+ H  R+    LF+ + V +  VF 
Sbjct: 132 IATKSHVFLFDIFLLGPQAFRNGLQAVLEDKNILKVMHDCRWISDCLFHQYSVLLDNVFD 191

Query: 103 TKIA-----SRLTRTYTNQ--HGLKDNLKELLGI-----NISKAQQ-----SSD-WSADD 144
           T++A     S  T  +       L++ L + L I      + K +Q     + D W    
Sbjct: 192 TQVADVLQFSVATGGFFPHRTCTLQECLMQHLRIPSKWKTLMKCKQQMALENPDTWFLRP 251

Query: 145 LSDEQLQYAASDVVHLHALRLQFTE 169
           L    LQ  A   + L  L     +
Sbjct: 252 LPASLLQVLALKAMCLLLLHSSLMD 276


>gi|294951230|ref|XP_002786896.1| hypothetical protein Pmar_PMAR011449 [Perkinsus marinus ATCC 50983]
 gi|239901447|gb|EER18692.1| hypothetical protein Pmar_PMAR011449 [Perkinsus marinus ATCC 50983]
          Length = 94

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            L+      L   + KA++ S+W    LS  QL+YAA+D      +      
Sbjct: 36  SLQGLCALFLHKRLLKAERISNWEQVPLSPSQLEYAATDAWVSRQVLEAMRA 87


>gi|154336351|ref|XP_001564411.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061446|emb|CAM38473.1| hypothetical protein, unknown function [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 527

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 19/153 (12%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI-IRIAAGQKNAPNLVGMLVDEKREK 77
           Y+  + +D+E     P    + +VQ +       + I     +     +   L D    K
Sbjct: 11  YLRIMGIDSEWFRSSP----VAVVQFATSSHCFVLHISFFDDRALPAAVKEALCDPAIIK 66

Query: 78  --IFHYGRFDIAVLFYTFGVRVRPVFCTKIA---SRLTRTYTNQHGLKDNLKELLGINIS 132
             +   G  D++ L     + ++ V    +A   +     +  +  LK   + +  ++I 
Sbjct: 67  CGVGING--DVSRLRKEQDITIQSVLD--VAHYSAFFGLHHGARSNLKALAESVANLSIV 122

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVV--HLH 161
           K      S+W    L D  + YAA D +  +L 
Sbjct: 123 KDNKITRSNWEL-PLPDSSVNYAAEDALASYLI 154


>gi|308472106|ref|XP_003098282.1| hypothetical protein CRE_08446 [Caenorhabditis remanei]
 gi|308269268|gb|EFP13221.1| hypothetical protein CRE_08446 [Caenorhabditis remanei]
          Length = 231

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
                 L   + +  G+ I K +  SDW+   L  +QL YAA D + LH +
Sbjct: 62  QGTGMSLLKMVDDWAGVKIFKTETMSDWTVQTLRHDQLHYAAMDAIALHYI 112


>gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
 gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
          Length = 315

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 69/232 (29%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA---------- 154
             ++    +   H L+   K +LGI +S              D+ +  AA          
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLSSHNAF---------DDCITCAAVYQKCASIEE 173

Query: 155 -----SDVVHLHA--LRLQFTEKLQRLGRS-DLATSCCNFLMDRAELDLLGW 198
                SD   L    +     + L R  R  +        +   + LD+  +
Sbjct: 174 ETNRKSDTKVLDETAVYEAVKKMLVRNKRDIEWV----RCMNVGSYLDIKAF 221


>gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
 gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
          Length = 941

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 13/122 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
              + +AVDTET  L   R ++  V  S   G    I +     +AP           L 
Sbjct: 362 EAAELVAVDTETTSLDEMRAQIVGVSFSVTPGEAAYIPLTHDYPSAPEQLPLDEVLARLK 421

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
             L +  R K+    ++D  V     G+ V+     T + S +    T  HGL    +  
Sbjct: 422 PWLENPARPKLGQNIKYDRHVFANH-GIEVQGYAHDTMLQSYVLEV-TKPHGLASLAERH 479

Query: 127 LG 128
           +G
Sbjct: 480 VG 481


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 22/197 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75
                 IA DTET GL  +  ++        +     + +          + +   +K  
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAI 372

Query: 76  EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E IF      H  ++D  ++   F +   +    T I + L +  + +  + D    L  
Sbjct: 373 EVIFNHFVIGHNLKYDFKIIQNNFDLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431

Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
                    + K +   ++++ +L     +YAA D        L F + L+     +LA 
Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLE-TPLLELAK 486

Query: 182 SC-CNFLMDRAELDLLG 197
           +C  +F+     ++  G
Sbjct: 487 NCEFDFIKIIMMMEENG 503


>gi|268533708|ref|XP_002631983.1| Hypothetical protein CBG10261 [Caenorhabditis briggsae]
 gi|187031193|emb|CAP29729.1| hypothetical protein CBG_10261 [Caenorhabditis briggsae AF16]
          Length = 413

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 22/138 (15%)

Query: 19  YVDAIAVDTE-TLGLMPRRDRLCIVQLSPGD-GTVDIIRI-AAGQKNAPNLVGMLVD-EK 74
           +   I VDTE    ++P   +  +V     D  TV + RI    +K   N+  ++++  K
Sbjct: 241 FTKPIYVDTENAYKVIPHGSKTALVTFCDADMKTVLLWRIHKHTRKEVENMKKLMIELSK 300

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
             K   +G+               P+             T    LK       GI ISK 
Sbjct: 301 IRKFAAFGKE--EFF------DPIPLAD------FASGGT---SLKSLAMSH-GIEISKT 342

Query: 135 QQSSDWSADDLSDEQLQY 152
           +  SDW+A++L D+Q+QY
Sbjct: 343 ETMSDWTAEELRDDQMQY 360


>gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
 gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
          Length = 939

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 72/222 (32%), Gaps = 40/222 (18%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        + I +DTET  L      L  + ++   G    I +      AP
Sbjct: 337 TTEAQFAALLDKLSQAEKIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 396

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 397 EQLDLQYVLDRLKPHLENSALKKIGQNLKYDQHVFANY-GIALNGIVGDAMLASYIIESH 455

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +     LG+            +K    +D +    ++    YAA D      L
Sbjct: 456 L-GHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATE----YAAQDADFALRL 510

Query: 164 RLQF-----TEKLQRLGRSDL----ATSCCNFL---MDRAEL 193
                     ++L+   + +L           +   +DRAEL
Sbjct: 511 EAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAEL 552


>gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6]
 gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6]
          Length = 628

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 36/168 (21%)

Query: 50  TVDI-IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG--VRVRPVFCTKIA 106
           TVDI  R    +    +L G+L + + +K  H  +F ++ +    G  +    +F   +A
Sbjct: 69  TVDIADRPELKESIIGDLAGLLENGRIKKTLHDSKFVLSFIRARAGRKLNFCSIFDVMLA 128

Query: 107 SRLTRTYTNQ-----------------HGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
           S++  +                     H L    +  LGI +   +             Q
Sbjct: 129 SQICWSGYYYLTPSGNPKNPWTKRLVDHSLASLAERHLGIILD-EEGC---------PAQ 178

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
              AA+    L  L     + L +     +A       +   E+++ G
Sbjct: 179 G--AAA----LLPLHDILADLLAKNDLQRVADLEFRAAIALVEMEISG 220


>gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 997

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLK 124
           L  +L D    KI    ++D+ ++    GV V P   T + S +    T   HG+    +
Sbjct: 470 LKPLLEDRSVLKIAQNLKYDLVIMSRY-GVDVAPFDDTMLISYVLDAGTPHGHGMDALAE 528

Query: 125 ELLGINI--SKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG 175
           + LG      K    S      +  +Q+       +AA D      L L    +L   G
Sbjct: 529 KWLGHTPLQLKDVTGS--GKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKG 585


>gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1]
 gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1]
          Length = 923

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 61/205 (29%), Gaps = 26/205 (12%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI   E         R     A+DTET  L P +  L  +  +   G    +        
Sbjct: 325 TIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPG 384

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           AP           L  +L D    K+  +G++D+ VL     V       T + S +  +
Sbjct: 385 APVQLDRGQALALLQPLLEDPAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTS 444

Query: 113 YTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS----DEQLQYAASDVVHLH 161
              +H +    +  LG         + K  +         S     E  QYAA D     
Sbjct: 445 GHARHDMDTLARRHLGYETMKYVDLVGKGAKQI-----PFSHVGVQEATQYAAEDADITL 499

Query: 162 ALRLQFTEKLQRLGRSDLATSCCNF 186
            L      KL    R +        
Sbjct: 500 RLHCVLAPKLLAEPRLERVYREIEM 524


>gi|298707097|emb|CBJ29889.1| WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3\'-5\' exonuclease/
           nucleic acid binding [Ectocarpus siliculosus]
          Length = 248

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 111 RTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           R       L D   E+L + + K  + ++  W    LS +QL YAA+D      L     
Sbjct: 49  RRRRGMWSLADLCAEVLELELKKPASLRTGSWEKRPLSVDQLFYAAADAYAGLRLWQTMH 108

Query: 169 EK 170
           E 
Sbjct: 109 EM 110


>gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
 gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
          Length = 920

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 56/176 (31%), Gaps = 37/176 (21%)

Query: 22  AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAG---------QKNAPNLVG 68
            +A DTET  + P    L    C      G+G   +  I  G         +     L  
Sbjct: 331 PVAWDTETNSIDPLEADLVGIGC----CWGEGPTALAYIPVGHTAGEQLSMETVLSALKP 386

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           +L D++  K+F   ++D  VL          VF   +AS +     N H L D     L 
Sbjct: 387 ILEDQQYPKVFQNAKYDRLVLRRAGVSLTGVVFDPMLASYVLNPE-NSHNLSDLALRYLE 445

Query: 129 INISKAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR 173
           +        +D     L  +             QY  SDV   + L       LQ 
Sbjct: 446 LT---TVSYTD-----LVPKGKTIGEVAIAEVAQYCGSDVHTTYRLVPLLKADLQE 493


>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
          Length = 942

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 18/181 (9%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----LVGMLV 71
                     D+ET  L      +  +  +    +   +   A ++ A         +  
Sbjct: 364 LLNQQSEFCFDSETTSLNTLEAEIVGLSFAVKSFSAYYVPFPANREEAQAKINAFRSLFE 423

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG-- 128
           D+ +  I    ++D  VL    G+ ++  +F T +A         +H +    +  L   
Sbjct: 424 DDTKTLIGQNIKYDFQVLKNY-GIEIKNKLFDTMVA-HFLIMPEMRHNMDILAQTYLNYS 481

Query: 129 -INIS-----KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
            ++I      K ++ +  S  D+  E++ +YAA D      L+  F  KL       L T
Sbjct: 482 PVSIETLIGKKGKEQT--SMRDVEIEKIKEYAAEDADVTFQLKTAFAPKLIENEVEKLFT 539

Query: 182 S 182
            
Sbjct: 540 E 540


>gi|115436114|ref|NP_001042815.1| Os01g0299700 [Oryza sativa Japonica Group]
 gi|113532346|dbj|BAF04729.1| Os01g0299700 [Oryza sativa Japonica Group]
          Length = 237

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 37  DRLCIVQLSPGDGTVDIIRIA--AGQKNAPNLV-GMLVDEKREKIFHYGRFDIAVLFYTF 93
             + I+QL  GD +  I+++   AG +  P LV  +L D     +      + A L   +
Sbjct: 88  PTVAILQLCAGD-SCLILQLLHVAGARRVPPLVGDLLADPSVRLVGIGIGENAAKLADGY 146

Query: 94  GVRVRPVFCTKIAS--RLTRTYT-NQHGLKDNLKELLGINISK--AQQSSDWSADDLSDE 148
           GVR       +     RL R     + GLK  ++E+LG+ + K      SDW    L   
Sbjct: 147 GVRCAAPVDLEDVCDRRLGRLPGARRLGLKGYVREVLGLTMEKPMDVTRSDWERRHLDAA 206

Query: 149 QLQYAAS 155
           Q++YA S
Sbjct: 207 QVRYACS 213


>gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
 gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
          Length = 874

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 20/157 (12%)

Query: 46  PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTK 104
            GD  V I            +  +L DE   K+ +  + D+       G  +R + F  +
Sbjct: 349 AGDEAVYI---PHNVNGWELVWDLLADETIPKVTYNAK-DVCNACKAKGTELRGLCFDIQ 404

Query: 105 IASRLTRTYTNQHGLKDNLKELLGI---NISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
           +A+ L      ++ L +   + LG+   ++ K                  YA      + 
Sbjct: 405 LAAYLLEPTAAKYPLTELACQHLGLAVGDMDKEH-----LGTP------DYAGWAAEVVQ 453

Query: 162 ALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
            L     EKL   G ++L        +   +E+++ G
Sbjct: 454 RLYPVLKEKLVAAGLAELYEEIELPLVPVLSEMEIAG 490


>gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
 gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
          Length = 986

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 30/183 (16%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG---------------QKN 62
             +  +A+DTET  L P    L  + +  G+G  D+  I  G                  
Sbjct: 383 DRLKPVAIDTETTALNPFCAELVGLGVCWGEGLQDLAYIPIGHHPPAALLDADAACQLPL 442

Query: 63  APNLVGM---LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
              L  +   L      K     ++D  +L          V  T +A    R    +HGL
Sbjct: 443 EAVLKAIAPWLASNDHPKALQNAKYDRLILLRHGLALEGVVMDTLLA-DYLRDAAAKHGL 501

Query: 120 KDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +   +    I        + K Q  +D +    S     Y   DV     L ++   +L+
Sbjct: 502 EVMAEREFKITPTGFSELVGKGQTFADVAIPTAS----LYCGMDVHLTRRLAIRLRAQLE 557

Query: 173 RLG 175
            +G
Sbjct: 558 NMG 560


>gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190]
          Length = 975

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        + I +DTET  L      L  + ++   G    I +      AP
Sbjct: 381 TTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 440

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 441 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 499

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 500 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 554

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 555 EAHLRAQMDEK 565


>gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 537

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 33/220 (15%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           +     ++ A   +AR    +A+D       P    +C V L+   G    + +      
Sbjct: 48  VLTTREELEAFARSARAAGRLALDVLATSREPMSAHVCGVALACEPGQAVYVPLGHRYLG 107

Query: 63  APN----------LVGMLVDEKREKIFHYGRF-DIAVLFYTFGVRVRPVFCTKIASRLTR 111
           AP           +  +L D +  K+ H  +F ++ +L +  G+     F T +AS L  
Sbjct: 108 APAQLSMSDIDAVMGPLLADPELPKVGHDVKFCEVILLRHRIGLVGVS-FDTMLASYLLD 166

Query: 112 TYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQL----QY--AASDVV 158
                  L +  +  LG  +        K +  +      L + +L     Y  A +DV 
Sbjct: 167 PEGKNQ-LHELAERELGAKMQTLDEVAPKRRGQA---QRALDEIELGEASSYGAAFADVA 222

Query: 159 HLHALRLQFTEKLQRLGRSD-LATSCCNFLMDRAELDLLG 197
              +L  +   +L+     D L           AE++L G
Sbjct: 223 --LSLTDRLRPRLRVEKLEDLLVQIELPLSAVLAEMELTG 260


>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
 gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
          Length = 957

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 13/122 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D +A+DTET  L   R ++  +  S   G    I +A    +AP           L 
Sbjct: 378 QAADLVALDTETTSLDEMRAQIVGISFSVTPGEAAYIPLAHAYPDAPAQLPLADVLAKLK 437

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
             L D   +K+  + ++D  V     G+ V+     T + S +    T  HGL    +  
Sbjct: 438 PWLQDASHKKLGQHVKYDRHVFANH-GIEVQGYAHDTMLQSYVLEV-TKPHGLASLAERH 495

Query: 127 LG 128
           LG
Sbjct: 496 LG 497


>gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
 gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
          Length = 1003

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLK 124
           L  +L D    KI    ++D+ ++    G+ V P   T + S +    T   HG+    +
Sbjct: 476 LKPLLEDRSVLKIAQNLKYDLVIMSRY-GIDVAPFDDTMLISYVLDAGTPHGHGMDQLAE 534

Query: 125 ELLGINI--SKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG 175
           + LG      K    S      +  +Q+       +AA D      L L    +L   G
Sbjct: 535 KWLGHTPLQLKDVTGS--GKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKG 591


>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
 gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 1455

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 45/212 (21%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRL-----CIVQ--LSPGDGTVDI---IRIAAGQKNA 63
               +    +  D ET GL P  + +      ++Q  +        +     I       
Sbjct: 393 NFDLKSARYVVFDLETTGLSPVYNEIIEFGAVVIQDGIQTESHQFFVKAKEPIPTEITKI 452

Query: 64  PNLVGMLVDE-------------KREK----IFHYGRFDIAVLFYTFGVRV-----RPVF 101
            N+   +VDE             K  K    + H  +FD   L   F         +P+ 
Sbjct: 453 TNITQEMVDEQGIEATEAFYRISKIIKDSILVAHNAKFDFNFLAELFKKEASMTIDQPII 512

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKA-QQSSDWSADDLSDEQLQYAASDVVHL 160
            T   SR        H LK+ + +L+G+   +     +D+ A+ LS   L +        
Sbjct: 513 DTLQVSRFLNPSQKSHSLKN-VSKLIGLYYDETVAHRADYDAEILSKVWLNF-------- 563

Query: 161 HALRLQFTEKLQRLGRSDL-ATSCCNFLMDRA 191
             L     + +  L + +  + S  +   ++ 
Sbjct: 564 --LTQILDQDITDLKKLEYTSQSIFDLKPEKV 593


>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 49/200 (24%)

Query: 19  YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64
            V  +AVDTET  L      L      +   + GD     +         P         
Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLTHKEQVTLEPQQSDLFAEQ 410

Query: 65  -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100
                                   L  +L +   +KI    ++D+ +     GV+V  V 
Sbjct: 411 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVA 469

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154
           F T + S    + T +H + +     LG    + ++ +    + L+ +++      +YAA
Sbjct: 470 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASKYAA 528

Query: 155 SDVVHLHALRLQFTEKLQRL 174
            D      L    T +L + 
Sbjct: 529 EDADVTMKLHQVLTPELDKT 548


>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
 gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
          Length = 914

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 29/172 (16%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------AGQKNAPNLVGMLVDE 73
           A+DTET  L     +L  + LS   G    I +A            Q     L   L + 
Sbjct: 340 AIDTETTSLDVMNAKLVGISLSIEPGHAAYIPLAHHSMEQSEQLPLQSVLDKLKPWLENP 399

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           K+ K+    ++D  VL    G+R++ +   T + S +  ++  +H +    +  L     
Sbjct: 400 KKHKVGQNLKYDSHVLANY-GIRLQGIVHDTLLESYVLESH-RRHDMDSLSERFLDY--- 454

Query: 133 KAQQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQR 173
           K    +D         Q+            YAA D      L      +L+ 
Sbjct: 455 KPVSYTDICGK--GASQIGFDEIAIDVATHYAAEDADVTLQLHQSMWPRLKE 504


>gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
 gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
          Length = 976

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 25/140 (17%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------QKNAPNLVGM 69
           +++DTET  L P    L  + L  G+   D+  I  G             +     L   
Sbjct: 383 VSLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGHQTKKETPDQLSIEDVFSKLRNW 442

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + D K+EK     +FD  + F   G+ ++ V F T +A  L      +HGL +    L G
Sbjct: 443 IEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTFDTLLADYLLNNQ-EKHGLSEISFRLFG 500

Query: 129 ---------INISKAQQSSD 139
                    +  +K     D
Sbjct: 501 FKPPSFKETVGKNKDFSFVD 520


>gi|295666185|ref|XP_002793643.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226277937|gb|EEH33503.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 270

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 72/205 (35%), Gaps = 36/205 (17%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNA--------P 64
           +       ++ +D E + L  R  R+ I+QL       + ++ I      A         
Sbjct: 24  DTLPTSPPSLYIDLEGISL-SREGRISILQLFNHPKNHLYLVDIHVLGHEAFTTAAANGK 82

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASR--LTRTYTNQHGL 119
           +L  +L      K+F   R D    F+ F +R++ V   ++   ASR           GL
Sbjct: 83  SLRTILESPDVPKVFFDVRNDSNAFFFHFDIRLQGVEDIQLMENASRPGFLSRKRFVSGL 142

Query: 120 KDNLKELLGINIS-----KAQQ-------SSDWS-------ADDLSDEQLQYAASDVVHL 160
              ++    I++S     K  +       + D         A  L    L Y   D+  L
Sbjct: 143 ARCVEHDAPISLSEKRLWKEHKERRVRLFNPDCGGSYETLNARPLPQAILDYGVCDLTFL 202

Query: 161 HALRLQFTEKLQRLGRS--DLATSC 183
             LR  +  KL    ++  D+AT  
Sbjct: 203 PLLRTVYWSKLSPEWKALVDVATKE 227


>gi|125547066|gb|EAY92888.1| hypothetical protein OsI_14692 [Oryza sativa Indica Group]
          Length = 256

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 85  DIAVLFYTFGVRVRPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWS 141
           D   +F  + V V+P+   + +A+        +  L    + +    + K    +  +W 
Sbjct: 153 DARKMFNDYDVHVQPLMDLSNLANAKLGFPPKRWSLASLTEMVTCRELPKPSNIRMGNWE 212

Query: 142 ADDLSDEQLQYAASDV---VHLHALRLQF 167
           A  LS +QLQYAA+D     HL+ +    
Sbjct: 213 AYVLSKQQLQYAATDAYISWHLYEVLQSL 241


>gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937]
 gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937]
          Length = 944

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 59/180 (32%), Gaps = 34/180 (18%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------------------- 59
           DTET GL      L  V L+   G    + +                             
Sbjct: 355 DTETDGLDTLTANLVGVSLAIKPGEAAYLPLGHITSRVYSSNIYSSTVSPATRMSTQLDR 414

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHG 118
            +    L  +L D+   KI    +FD  V+    G+ +R + F T + S +  +   +H 
Sbjct: 415 DRVLALLKPLLEDDGIRKIGQNLKFDKGVMARY-GIDLRGIAFDTMLESYVLDSVAGRHD 473

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172
           +    +  L       ++ +    + L+ +Q+       YAA D      L      KL+
Sbjct: 474 MDSLSERYLQHKTITFEEIAGKGKNQLTFDQIPLAQASVYAAEDADVTLRLHETLWAKLE 533


>gi|126330751|ref|XP_001372295.1| PREDICTED: similar to Werner syndrome, [Monodelphis domestica]
          Length = 1293

 Score = 50.0 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 53/158 (33%), Gaps = 19/158 (12%)

Query: 22  AIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            I  D E         P   R+ ++QL   +    +  IA+       L  +L  E   K
Sbjct: 80  VIGFDMEWPPPFWKGRP--GRVALIQLCVSESKCYLFHIASMSVFPRGLKMLLESETIRK 137

Query: 78  IFHYG--RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT---NQHGLKDNLKELLGINIS 132
               G    D   L   F V +R     ++AS L            L   +K L    + 
Sbjct: 138 ---AGLGTGDQWKLLRDFDVHLRSF--VELAS-LANEKLRCKENWSLDGLVKHLFRKCLL 191

Query: 133 KAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           K Q  +   W    L+++Q QYAA D      +  Q  
Sbjct: 192 KEQSIRCGRWEDFPLTEDQKQYAAIDAYASFIIHQQLE 229


>gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon]
 gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon]
          Length = 609

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 15/141 (10%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58
            +  HE D+          +  + +DTET  L   +    + ++Q         ++ +  
Sbjct: 16  NVVEHEDDLDGFESFIRSNLRILGLDTETTDLGIYKPDFGIRLIQFGNP-WESWVLPVER 74

Query: 59  GQKNAPNLVGMLVDEKREK-IFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--R 111
           G       V  L  +K EK + H   FD+ V+  T GV +  ++     TKI S L   R
Sbjct: 75  GGVFVGAAVTAL--QKVEKFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPR 132

Query: 112 TYTNQHGLKDNLKELLGINIS 132
            Y    G    L+EL    I 
Sbjct: 133 AYKEG-GTGHKLEELTKFYID 152


>gi|123449410|ref|XP_001313424.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
 gi|121895307|gb|EAY00495.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
          Length = 605

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 53/167 (31%), Gaps = 24/167 (14%)

Query: 3   TIRVHEGDIPAECAARYVD--AIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIR--I 56
           T+   E D  +EC  ++ D   I +D E            + + Q     G V I+   +
Sbjct: 41  TVISSESDKLSECFNQFDDGNVICIDLEWKPNRNDQAHP-ISLFQFCSSKG-VLIVPNSL 98

Query: 57  AAGQKNAPNLVGM--LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
             G  +  N +       +           D   L   F      +    I         
Sbjct: 99  EDGTDSLHNFLQAHTFYAKGI-------SQDKKKLRQMFDETFD-IID--IEKYYLTPNN 148

Query: 115 NQHGLKDNLKELLGINI----SKAQQSSDWSADDLSDEQLQYAASDV 157
                +  +  L+G        K   +SDW+   LS +Q+ YAA DV
Sbjct: 149 LPLNFEQMITTLVGEPSAQFKDKKMTTSDWTKRPLSVKQILYAAFDV 195


>gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
          Length = 922

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A+DTET  L P R RL  + LS   G    + +A     AP           L   L + 
Sbjct: 349 AIDTETDSLDPMRARLIGISLSVTPGEAAYLPLAHAYPGAPEQLPMAEVLERLRPWLENA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            + K+    ++D  V     GV +R     T + S +   +   H L   +   LG +
Sbjct: 409 DKPKLGQNAKYDRHVFANA-GVTIRGYAHDTLLESYVIEAHKP-HSLDSLVSRHLGRD 464


>gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 686

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 43/197 (21%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---------------------- 56
            V  +AVDTET  L      L  +     +G    I +                      
Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGISFGLANGEACYIPLTHKEQVTLEPQQSDLFAEPAEV 413

Query: 57  --------AAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103
                   A  Q N       L  +L     +KI    ++D+ +     GV+V  V F T
Sbjct: 414 ETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQVEGVAFDT 472

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157
            + S    + T +H + +     LG    + ++ +    + L+ +++      QYAA D 
Sbjct: 473 MLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASQYAAEDA 531

Query: 158 VHLHALRLQFTEKLQRL 174
                L      +L++ 
Sbjct: 532 DVTMKLHQVLAPELEKA 548


>gi|294901270|ref|XP_002777314.1| hypothetical protein Pmar_PMAR024154 [Perkinsus marinus ATCC 50983]
 gi|239884856|gb|EER09130.1| hypothetical protein Pmar_PMAR024154 [Perkinsus marinus ATCC 50983]
          Length = 326

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 18/116 (15%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-------PGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +++D+E     P+   + ++Q+S         D  +D+      +     L  + V    
Sbjct: 216 VSIDSER---EPKTQAISLIQVSLYGPHRLRRDFIIDVQLFDDKEYLGRELAELFVSFNS 272

Query: 76  EKIFHYGRFDIAVLFYTFGV------RVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
            KI H    D+      F        RV  +  T+I    +R    + GL    +E
Sbjct: 273 LKILHSATNDLRHFEKNFEACECIRERVNNLLDTQILG--SRLGQTKLGLAKLAEE 326


>gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 956

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           L  ++ ++K +K+ H G+  +        + V+   F T IA+ L  +  +++ L + ++
Sbjct: 455 LKNVMENDKVKKVIHDGKN-LVTFLNKNNITVKEFDFDTAIAAYLLDSAQSKYNLTELIE 513

Query: 125 ELLGINISKAQQ 136
           + L   I   + 
Sbjct: 514 KYLNKEIDGIES 525


>gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium]
          Length = 944

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKREKIFHY 81
           DTET  L+     L  + LS   G    +   A     Q       G+L  E  +KI   
Sbjct: 374 DTETTSLVAIEAELVGLALSYYAGEAYYVPFPADKAQTQAILEEFRGVLESENIKKIGQN 433

Query: 82  GRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            ++DI VL     + ++   F T +AS L     N+H +    ++ L  +  K
Sbjct: 434 LKYDITVLKKY-NIEIKGECFDTMLASYLLDP-DNRHSMDAMAEKYLNYSPVK 484


>gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
 gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
          Length = 318

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRILGIRLS 153


>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 43/197 (21%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---------------------- 56
            V  +AVDTET  L      L  +     +G    I +                      
Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGISFGLANGEACYIPLTHKEQVTLEPQQSDLFAEPAEV 413

Query: 57  --------AAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103
                   A  Q N       L  +L     +KI    ++D+ +     GV+V  V F T
Sbjct: 414 ETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQVEGVAFDT 472

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157
            + S    + T +H + +     LG    + ++ +    + L+ +++      QYAA D 
Sbjct: 473 MLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDIASQYAAEDA 531

Query: 158 VHLHALRLQFTEKLQRL 174
                L    + +L++ 
Sbjct: 532 DVTMKLHQVLSPELEKA 548


>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20]
 gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 957

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 49/200 (24%)

Query: 19  YVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIAAGQKNAP--------- 64
            V  +AVDTET  L      L      +   + GD     +         P         
Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGL---ANGDACYIPLTHKEQVTLEPQQSDLFAEQ 410

Query: 65  -----------------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100
                                   L  +L +   +KI    ++D+ +     GV+V  V 
Sbjct: 411 AEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVA 469

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAA 154
           F T + S    + T +H + +     LG    + ++ +    + L+ +++      +YAA
Sbjct: 470 FDTMLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVASKYAA 528

Query: 155 SDVVHLHALRLQFTEKLQRL 174
            D      L      +L + 
Sbjct: 529 EDADVTMKLHQVLVPELDKT 548


>gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18]
 gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18]
          Length = 892

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 71/209 (33%), Gaps = 35/209 (16%)

Query: 17  ARYVDAIAVDTETLGLMPR------RDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65
            +   A A+D ET  L P           C+            I I      AP      
Sbjct: 310 LKKAPAFAIDLETTSLNPLDASIVGYAVSCL------AHEAYYIPIGHRYLGAPEQLPEA 363

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119
                L  +L D  R+KI    ++D  VL  + GV +  ++  T +A+ L     N  GL
Sbjct: 364 LVLELLGPLLTDPDRKKIGQNLKYDYQVLQQS-GVELAGIWCDTMLAAYLVNPSRNSQGL 422

Query: 120 KDNLKELLGINISKAQQSSDWSADDL--SDEQLQYAA------SDVVHLHALRLQFTEKL 171
                E L   +    + +     +L  S+  L  A       +D  +L  L      K+
Sbjct: 423 DALALEYLDHRMISYAEVAGTGKCELNFSEVDLDRAGPYSCEDADATYL--LHEILLPKV 480

Query: 172 QRLGRSD-LATSCCNFLMDRAELDLLGWE 199
           +  G    L       +   A+++L G +
Sbjct: 481 REQGMEGLLFDVEMPLMKILADMELCGVK 509


>gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment']
          Length = 873

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 42/210 (20%)

Query: 9   GDIPAECAARYVDAIAV--------DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           G+      A    AIAV        D E  GL       C    +  D  +     A   
Sbjct: 303 GEAARGLLASDSVAIAVALRGDGTADGEFFGLA-----FC----AEPDVALCCFPDAMTD 353

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQ 116
                +  +L  E+  KI H    D+  +    G +   +    F T +AS L     + 
Sbjct: 354 SYLERVRPVLAGERPGKIGH----DLKRIMTAIGKKGVALRGLSFDTMVASYLLNPNRSD 409

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLS-------DEQLQYAASDVVHLHALRLQFTE 169
           H L   + ELLG+          W     +       +  ++ AA +   +  L+     
Sbjct: 410 HSLATLVFELLGVK---------WEQGPGARGGNDGRETAMRGAAEEAHLVWQLKEALLP 460

Query: 170 KLQRLGRSDLATS-CCNFLMDRAELDLLGW 198
           +L + G   L T+     +   A ++ +G+
Sbjct: 461 QLGQAGLLPLFTTIEMPLIEVLASMEEVGF 490


>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
 gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 965

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 38/149 (25%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-------------------- 57
           R V  +AVDTET  L P    L  +  +  +G    I +A                    
Sbjct: 361 RQVKLVAVDTETNALDPMLAELVGISFALENGEACYIPLAHVHQVAAQAENAQGDLFAES 420

Query: 58  -----------AGQKN----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-F 101
                       GQ N       L  +L + + +KI    ++D+ +     G+ ++ V F
Sbjct: 421 EQSSESRWEPVVGQLNKAECLSQLKPLLENPEIKKIGQNIKYDLTIFANN-GINMQGVTF 479

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGIN 130
            T + S +  + T +H + D  +  LG +
Sbjct: 480 DTMLESYVLNS-TGRHNMDDLAERYLGHH 507


>gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640]
 gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06]
          Length = 932

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 71/222 (31%), Gaps = 40/222 (18%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        + I +DTET  L         + ++   G    I +      AP
Sbjct: 337 TTEAQFAALLDKLSQAEKIGIDTETTSLDAMNAAPVGISIAFQAGEAVYIPVGHSLTAAP 396

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 397 EQLDLQYVLDRLKPHLENPALKKIGQNLKYDQHVFAN-CGIALNGIVGDAMLASYIIESH 455

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +     LG+            +K    +D +    ++    YAA D      L
Sbjct: 456 L-GHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATE----YAAQDADFALRL 510

Query: 164 RLQF-----TEKLQRLGRSDL----ATSCCNFL---MDRAEL 193
                     ++L+   + +L           +   +DRAEL
Sbjct: 511 EAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAEL 552


>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
 gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
          Length = 962

 Score = 49.6 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 48/200 (24%)

Query: 18  RYVDAIAVDTETLGLMPRRDRL------------CIV------QLS-----------PGD 48
                +AVDTET  +      L            C +      Q+S             +
Sbjct: 359 EQAKLVAVDTETDNVDAMSAHLVGISFSLSNGEACYIPLAHTQQISVQPQQEDLFAETDN 418

Query: 49  GTVDIIRIAAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103
             +   ++A+ Q N       L  +L + + +K+    ++D+ V     G+ ++ V F T
Sbjct: 419 DAITQFQLASNQLNLTACLAQLKPLLENVEIKKVGQNIKYDLTVFANH-GIELQGVAFDT 477

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAA 154
            + S    + T +H + +  +  L     K     D      + L+ +++      +YAA
Sbjct: 478 MLESYTLNS-TGRHNMDELAERYLDH---KTIAFEDIAGKGKNQLTFDKIAIETATEYAA 533

Query: 155 SDVVHLHALRLQFTEKLQRL 174
            D      L  Q    L + 
Sbjct: 534 EDADITMKLHQQLITSLAKT 553


>gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355]
          Length = 908

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        + I +DTET  L      L  + ++   G    I +      AP
Sbjct: 314 TTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 373

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 374 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 432

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 433 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 487

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 488 EAHLRAQMDEK 498


>gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 908

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRT 112
              A  + +       L D  R K+FH  +  + V     G  V  V   T +A+ L + 
Sbjct: 378 DPTALDEADETAWAAWLADPARPKVFHNAKSAMRVFAEH-GWTVEGVGMDTALAAYLVKP 436

Query: 113 YTNQHGLKDNLKELLGINI 131
                 L     E LG  +
Sbjct: 437 GRRSFDLDALTLEYLGREL 455


>gi|308455884|ref|XP_003090432.1| hypothetical protein CRE_12365 [Caenorhabditis remanei]
 gi|308263351|gb|EFP07304.1| hypothetical protein CRE_12365 [Caenorhabditis remanei]
          Length = 308

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              LK  + +  G+ I K +  S W+  DL  +QL YAA D + LH +
Sbjct: 228 GMSLKKMVDDWAGVKIVKTETMSCWTVPDLRHDQLHYAAMDAIALHYI 275


>gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 625

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 51  AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 110

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 111 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 168

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 169 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 216


>gi|312076359|ref|XP_003140825.1| 3'-5' exonuclease [Loa loa]
 gi|307764011|gb|EFO23245.1| 3'-5' exonuclease [Loa loa]
          Length = 596

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 47/126 (37%), Gaps = 16/126 (12%)

Query: 39  LCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           L ++ L+     V    + +        +  +L  EK  K+ H  +    +L + + + +
Sbjct: 362 LSLIVLATTTQIVVFDVVHSDTILLESGVKEILESEKIIKVIHDAKRVATLLAHRYAINL 421

Query: 98  RPVFCTKIASRLT------RTYTNQH--GLKDNLKELLGINI-------SKAQQSSDWSA 142
           R +F T++A  +       +  T+ H    ++  +     +I        K   S  W  
Sbjct: 422 RKIFDTQVAHAILQHEKFGKALTDMHTVSFRNLQRIYYPQSIMMSDTTPRKLSHSPSWGL 481

Query: 143 DDLSDE 148
             ++++
Sbjct: 482 RPITED 487


>gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 622

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 48  AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAKLTPWLEDA 107

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 108 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 165

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 166 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 213


>gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1]
 gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1]
          Length = 765

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 15/120 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNLVG-MLVD 72
            +DTET GL    D++  V L         + +             Q     +   ++  
Sbjct: 80  GLDTETTGLNVVDDKIAGVNLYTPGEKGIYVPLNHVSYMTGAKLKDQLPLDVVKKYIMQL 139

Query: 73  EKREKI-FHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
           E   K+ F    FD+ VL++  G+  ++  + T++A+ L       HGLK   ++ +   
Sbjct: 140 EN-TKLDFSNAHFDLQVLYWQMGINNIKAYWDTQLAANLLN-ENEPHGLKYLYEKYVKKE 197


>gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902]
          Length = 930

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        + I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDEK 520


>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
 gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
          Length = 923

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAKLTPWLEDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
 gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
          Length = 948

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 24/173 (13%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ------------KNAPNLVGMLVD 72
           +DTET  +  +   L  +  +        + +A                    L  +L +
Sbjct: 362 IDTETTDVNWQHAELVGLSFALQSHEAYYVPVAHVDEMGNRIEQLTREDVLAQLKPILQN 421

Query: 73  EKREKIFHYGRFDIAVLFYT---FGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
            +  KI  + ++D  +L                 T +AS +      +HG+ D  +  L 
Sbjct: 422 PQIGKIGQHLKYDAHILANYHINLINEPSNWAMDTMLASYVINAVATRHGMDDLARHYLH 481

Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                      K  +   +    L+     YA  D    + L   F+EKL+  
Sbjct: 482 TQTITFEDVAGKGAKQITFDKVPLTVA-SDYACEDADITYQLFELFSEKLKAE 533


>gi|297597576|ref|NP_001044181.2| Os01g0737600 [Oryza sativa Japonica Group]
 gi|57900569|dbj|BAD87021.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|125571949|gb|EAZ13464.1| hypothetical protein OsJ_03381 [Oryza sativa Japonica Group]
 gi|255673665|dbj|BAF06095.2| Os01g0737600 [Oryza sativa Japonica Group]
          Length = 208

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 15/145 (10%)

Query: 22  AIAVDTETLGLMPRR---DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
            + +D E             + ++Q+  G     I +I        +L   L D +   +
Sbjct: 53  VVGLDVE-WRPATYYHGPGPVAVLQICVG-RRCLIFQILHADYVPDSLFDFLADGRFTFV 110

Query: 79  ---FHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISK 133
               H    D+A L    G+ V  V     +A++          GL+  ++E++G+   K
Sbjct: 111 GVGIHD---DVAKLRSHHGLEVENVVDLRYLAAQTIGKPALRSAGLQGLVREVMGVWAPK 167

Query: 134 AQ--QSSDWSADDLSDEQLQYAASD 156
               + S W + +L+ EQ+ YA +D
Sbjct: 168 PYHVRVSAWDSWNLTPEQVMYACAD 192


>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
 gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
          Length = 923

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 618

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 44  AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 103

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 104 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 161

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 162 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 209


>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
 gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
 gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
          Length = 923

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
 gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
          Length = 923

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
 gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
          Length = 923

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVLAKLTPWLEDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
 gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
          Length = 923

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 619

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 45  AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 104

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 105 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 162

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 163 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 210


>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
          Length = 923

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 43/197 (21%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI---------------------- 56
            V  +AVDTET  L      L  V     +G    I +                      
Sbjct: 354 QVKLVAVDTETDNLDSMSANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSDLFAEPAEA 413

Query: 57  --------AAGQKNAP----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCT 103
                   A  Q N       L  +L     +KI    ++D+ +     GV+V  V F T
Sbjct: 414 ETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQVEGVAFDT 472

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDV 157
            + S    + T +H + +     LG    + ++ +    + L+ +++      QYAA D 
Sbjct: 473 MLESYTLNS-TGRHNMDELADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDIASQYAAEDA 531

Query: 158 VHLHALRLQFTEKLQRL 174
                L      +L++ 
Sbjct: 532 DVTMKLHQVLAPELEKA 548


>gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 318

 Score = 49.6 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
 gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
          Length = 905

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 14/131 (10%)

Query: 10  DIPAE-----CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           D+PA       A+R    + VD       P +     + L+ G   V          +  
Sbjct: 325 DLPAGGLGDWLASRAGRTVGVDV-AGRGTPAQGDAWGIALAAGGQGVAYDLADITPDDEQ 383

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQHGLK 120
            L   L D    K+ H         ++    R   +    F T++A+ L       + L 
Sbjct: 384 ALATWLADPTAPKVLHGA----KTAWHALAARGIGLDGVVFDTELAAYLCYPDQRGYDLG 439

Query: 121 DNLKELLGINI 131
           D +   LG  +
Sbjct: 440 DLVARHLGREL 450


>gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106]
 gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106]
          Length = 927

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 70/217 (32%), Gaps = 43/217 (19%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRI-------AAGQKN 62
           E      + +A DTET  L PR  +  +V +          +  I +          +  
Sbjct: 325 ETFTDKNNPVAWDTETTALEPRDAK--LVGIGCCWGSEKTEIAYIPLEHKTGNQLKKETV 382

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L   K  K     +FD  +           VF T +AS +     + H L + 
Sbjct: 383 LEALRPILESNKYPKALQNAKFDRLIFKVQGINLAGVVFDTMLASYVLNP-DDSHNLTEL 441

Query: 123 LKELLGIN-ISKAQ-QSSDWSADDLSDEQL----------QYAASDV--VHLH--ALRLQ 166
            ++ L    ++K+  Q S      LS +Q           +Y   DV   +L    LR +
Sbjct: 442 SRKYLDSGILAKSYKQLS------LSKKQTIADLDIPTAAEYCGLDVYATYLIVPKLRKE 495

Query: 167 FTE-------KLQRLGRSDLATSCCNFLMDRAELDLL 196
             +        L      +   +   +   R  +D L
Sbjct: 496 LQDFPELHKLLLDIEQPLEPVLAEMEYQGIRINVDYL 532


>gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium]
          Length = 557

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 30/174 (17%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQK--NA 63
            + AE  A+  D I+ DTET G       + +V LS     G+G       +A +     
Sbjct: 362 QLVAELMAQ--DEISFDTETTG--TYAHDVELVGLSFCYKTGEGYYIPCPPSANETQALL 417

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
            +   +  D  ++ I    ++D+ VL +   +     F T +A  L      + G+    
Sbjct: 418 QHFKPLFDDASKKWIGQNVKYDLIVLKWYGVLLAGQFFDTMLAHYLIEPEGRR-GMDYLS 476

Query: 124 KELLGIN-------ISKAQQSSDWSADDLS------DEQLQYAASDVVHLHALR 164
            + L          I K         + L+      ++  +YAA D      L+
Sbjct: 477 AQYLQYEPVHIEELIGKK------GKNQLTMKDVELEKIKEYAAEDADITLQLK 524


>gi|303282409|ref|XP_003060496.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457967|gb|EEH55265.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 661

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVV----HLHALRLQ 166
           SK  Q SDWS   LSD Q+ YAA D +     L  L  +
Sbjct: 357 SKTTQMSDWSRAPLSDAQIAYAAQDAIQSEVVLRGLHER 395


>gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
 gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
          Length = 930

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 335 TTEAQFAALLDKLSQADTIGIDTETTSLDAMDASLVGISIAFQAGEAVYIPVGHSLTAAP 394

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V     G+ +  +     +AS +  ++
Sbjct: 395 EQLDLQDVLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIAGDAMLASYIIESH 453

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 454 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 508

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 509 EAHLRAQMDAK 519


>gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 318

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
 gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
          Length = 924

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 27/181 (14%)

Query: 15  CAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN------- 65
             AR    + +A+DTET  L      +  +  S   G    I +     +AP        
Sbjct: 336 WLARIDAAELVALDTETTSLDEMVAEIVGISFSVTPGEAAYIPLMHDYPDAPAQLPRDEV 395

Query: 66  ---LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKD 121
              L G L +  ++K+  + ++D  V     G+ V+  V  T + S +   +   HGL  
Sbjct: 396 LAKLKGWLENPAKKKLGQHVKYDRHVFANH-GIEVQGYVHDTMLQSYVLEVHKP-HGLAS 453

Query: 122 NLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQ 172
             +  LG    K     D     A  +   Q+      +Y+  D      +      +L+
Sbjct: 454 LAERHLGR---KGINYEDLCGKGAKQIPFSQVSIDKAAEYSCEDSDQTLDVHRTLWPRLE 510

Query: 173 R 173
           +
Sbjct: 511 K 511


>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
 gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
          Length = 950

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 34/140 (24%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--------AGQKNAPN--------- 65
           IA+DTET  L   R  L  + L+   G    I +A        AGQ +  +         
Sbjct: 354 IALDTETDSLDSMRANLVGISLALASGEACYIPLAHKTLVTTSAGQGDLFSSEMETVGYE 413

Query: 66  --------------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
                         L  +L + + +KI    ++D+ V     G+ V+ V F T + S   
Sbjct: 414 LAKNQLNLTACLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQGVAFDTMLESYTL 472

Query: 111 RTYTNQHGLKDNLKELLGIN 130
            + T +H + D     LG  
Sbjct: 473 NS-TGRHNMDDLSDRYLGHK 491


>gi|170120055|ref|XP_001891097.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164633705|gb|EDQ98252.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 957

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 34/161 (21%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78
            + +DTE        D      ++ G+  V I +++    N      +   L + +  K+
Sbjct: 735 VVGLDTE-------WD------IAYGNE-VWIFQLSEHIANGSFPAQLSTFLANSQILKV 780

Query: 79  FHYGRFDIAVLFYT--------FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                 D+  L            G+ +  +     A         +  L D   + L   
Sbjct: 781 RRNVLLDLKNLQEDSESSTPFVGGIDLGRL-----AKEKNVVSDARASLGDLCIKTLSCI 835

Query: 131 ISKAQQ---SSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           + K      S DWS   L+DEQ+QYAA D      +  + T
Sbjct: 836 LPKDLNIRISPDWSG-PLTDEQIQYAALDAWASLKIYEKLT 875


>gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
          Length = 889

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 63/177 (35%), Gaps = 19/177 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           AR    +AV  E      R D   +V L+  +  + I  +    +    L  +L      
Sbjct: 314 ARAHSTLAVLVEGDLRPTRGDVTRLV-LASDNEALVIDPVELSPQQEEALGEVLA-TALS 371

Query: 77  KIFHYGRFDIAVL----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            I H  +     L    +   GV     F T +A+ L       H L+D L  +LG+ I 
Sbjct: 372 LIVHDAKGARHALSSRGWTLGGVE----FDTMLAAYLAHPDQRSHKLEDVLSRVLGVVIE 427

Query: 133 KAQQSS-------DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           + +  S       D  A   S  Q++ A     HLH L      +L+    + L T 
Sbjct: 428 EEEGDSEALFDLGDMGAGP-SAAQVR-AGKLAAHLHPLASTLRSRLEESSEAALLTD 482


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 70/197 (35%), Gaps = 22/197 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75
                 IA DTET GL  +  ++        +     + +          + +   +K  
Sbjct: 313 LDKESIIAFDTETTGLDTKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAI 372

Query: 76  EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E IF      H  ++D  ++   F +   +    T I + L +  + +  + D    L  
Sbjct: 373 EAIFNHFVIGHNLKYDFKIIQNNFDLNLPQKYADTMILAWL-KNPSLRVNMDDLALRLFN 431

Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
                    + K +   ++++ +L     +YAA D        L F + L+     +LA 
Sbjct: 432 YETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLE-TPLLELAK 486

Query: 182 SC-CNFLMDRAELDLLG 197
           +C  +F+     ++  G
Sbjct: 487 NCEFDFIKIIMMMEENG 503


>gi|115534501|ref|NP_502882.2| hypothetical protein Y105C5A.14 [Caenorhabditis elegans]
          Length = 318

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           E+ GI ++K +  SDW+ + L  +Q+ YA  D + LH +     E ++    SD 
Sbjct: 212 EVTGIVLNKEETLSDWAREVLRIDQIHYACMDAIILHHIYD---ENIEGETMSDW 263


>gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
 gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
          Length = 876

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 302 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 361

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 362 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 419

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 420 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 467


>gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG]
 gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG]
          Length = 608

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58
            +  HE D+          +  + +DTET GL   +D   + ++Q         ++ +  
Sbjct: 16  NVVEHEDDLDGFESFIRSNLRILGLDTETTGLNIYQDAFGIRLIQFGNP-WESWVLPVER 74

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112
           G       V  L   +R  + H   FD+ V+    GV +  ++     TKI S L   R 
Sbjct: 75  GGVFVGAAVTALQKVQRF-VIHNAAFDLQVIERMLGVPMEQMWPKVEDTKIYSHLVDPRA 133

Query: 113 YTNQHGLKDNLKELLGINIS 132
           Y    G    L+EL    I 
Sbjct: 134 YKEG-GTGHKLEELTKFYID 152


>gi|195327281|ref|XP_002030350.1| GM25386 [Drosophila sechellia]
 gi|194119293|gb|EDW41336.1| GM25386 [Drosophila sechellia]
          Length = 267

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 5/129 (3%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
           ++ G+GT  I  I A       L  +L  ++  K+ HY       L +   + +  +F T
Sbjct: 83  VATGNGT-YIFDIKALGLIFLELAKILEADQPRKVIHYSHRIADHLLHRHRISLGGIFDT 141

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKA----QQSSDWSADDLSDEQLQYAASDVVH 159
            +A  L       + L + +  + G+ + K     +   +++A  L+  Q++Y A  V  
Sbjct: 142 FVALCLISETRIPYTLPEAISLVFGLPMEKVTKACESQRNFTARPLTHSQMRYLAKMVQL 201

Query: 160 LHALRLQFT 168
            H +  +  
Sbjct: 202 QHIMHDRLN 210


>gi|301620462|ref|XP_002939597.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 3'-5' domain-containing
           protein 1-like [Xenopus (Silurana) tropicalis]
          Length = 490

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 28/159 (17%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRF--DIAVLFYTFG 94
           +L  +Q +          +  G K   N L  +L D    K+ H  R+  DI  L Y +G
Sbjct: 176 KLSWLQFATKSRVYLFDVLVLGSKVFKNGLQMVLEDTGILKVIHDCRWLGDI--LSYQYG 233

Query: 95  VRVRPVFCTKIA-----SRLTRTYTNQHGLKDNLKELLGINIS-----------KA---Q 135
           + +  VF T++      S  T  +   H ++   +E L  ++S           K    +
Sbjct: 234 IILNNVFDTQVGDVYLFSMETGGFLP-HRIRTL-EECLIHHLSMLPSRVSFLAHKQPLTE 291

Query: 136 QSSD-WSADDLSDEQLQYAASDVVHLHALRLQ-FTEKLQ 172
           +  D W    +    L+  + +V+HL  LR       L 
Sbjct: 292 EYDDIWFDRPMDPTLLKLLSLEVIHLLPLRSAMLDAMLA 330


>gi|170940093|emb|CAP65319.1| unnamed protein product [Podospora anserina S mat+]
          Length = 274

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 42/207 (20%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPN---------LVGML 70
            ++ +D E + L      + I+Q+         +I +    + A +            +L
Sbjct: 53  PSLYIDLEGVYLSRH-GTISILQIYVLPRRRAYLIDVHILGEKAFSTLSSTTGRTFKDIL 111

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--GLKDNLKELLG 128
             E   K+F   R D   LF  F +R+  V   ++    TRTY+ +   GL   ++    
Sbjct: 112 ESETIPKVFFDVRNDSDALFSHFQIRLAGVQDLQLMELATRTYSRRVVCGLARCIER--D 169

Query: 129 INISKAQQSSDW----------------------SADDLSDEQLQYAASDVVHLHALRLQ 166
            ++S + +SS W                      +   L++E  +Y   DV  L  L   
Sbjct: 170 ASLSTSVRSS-WMTTKERGTRLFAPERGGSYQVFNERPLNEEIRRYCVQDVHLLPRLWAH 228

Query: 167 FTEKLQRLGRSDLATSCCNFLMDRAEL 193
           +  KL +    D          DR  L
Sbjct: 229 YYGKLTK----DWERRVLEASRDRVAL 251


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 23/150 (15%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122
             L  +L D+K  K  H  ++ +  L  + G  V+ + F T IA+ L         +KD 
Sbjct: 385 SGLAALLGDKKMSKTAHNAKY-LMNLLLSAGQEVKGLDFDTMIAAHLLGE--KNLAIKDL 441

Query: 123 LKELLGINISKAQ-------QSSDWSADDLSD-EQLQYAASDVVHLHALRLQFTEKLQRL 174
           + E  GI I+  +       + + ++   LS+  QL   A+D  +   L+  F  +L   
Sbjct: 442 VFEHFGIEIADIENILTRNGKKTIFNEVQLSEAAQL---AAD--YTFRLKGIFAAQLAET 496

Query: 175 GRSDL-ATSCCNFLMDRAELDLLGWENVDI 203
              DL A      L       LLG E + I
Sbjct: 497 RLMDLFARVEMPLLPI-----LLGMERIGI 521


>gi|289762852|ref|ZP_06522230.1| conserved alanine rich protein [Mycobacterium tuberculosis GM 1503]
 gi|289710358|gb|EFD74374.1| conserved alanine rich protein [Mycobacterium tuberculosis GM 1503]
          Length = 259

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           + YAA DV  L  LR   +  L   G++D A      L
Sbjct: 1   MNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHL 38


>gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
 gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
          Length = 315

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
 gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
          Length = 318

 Score = 49.2 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
 gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
          Length = 318

 Score = 49.2 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper]
 gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper]
          Length = 609

 Score = 49.2 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58
            +  HE D+          +  + +DTET GL   +D   + ++Q         ++ +  
Sbjct: 16  NVVEHEDDLDGFESFIRSNLRILGLDTETTGLNIYQDDFGIRLIQFGNP-WESWVLPVER 74

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112
           G          L   +R  + H   FD+ V+  T GV +  ++     TKI S L   R 
Sbjct: 75  GGVFVGAAATALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133

Query: 113 YTNQHGLKDNLKELLGINIS 132
           Y    G    L+EL    I 
Sbjct: 134 YKEG-GTGHKLEELTKFYID 152


>gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 315

 Score = 49.2 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
 gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
          Length = 318

 Score = 49.2 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264]
 gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis
           BMB171]
 gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           B4264]
 gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis
           BMB171]
          Length = 315

 Score = 49.2 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
 gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
          Length = 901

 Score = 49.2 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 42  VQLSPGDGTVDIIRIAAG-QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           V L+  +G    + +    + +   L   L DE   K+ H  +  +  L          V
Sbjct: 355 VALAAPNGEGAYLDVTTLTEDDERALGEWLADENIHKVGHSLKKALHGLRSRGWRLAGLV 414

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             T++A+ L R       L D +   LG  +
Sbjct: 415 MDTELAAYLVRPGQRSFKLDDLVLRYLGKEL 445


>gi|159486097|ref|XP_001701080.1| hypothetical protein CHLREDRAFT_153315 [Chlamydomonas reinhardtii]
 gi|158271974|gb|EDO97782.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 537

 Score = 49.2 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 43/176 (24%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------------------- 57
             +  DTE +G     D+L +VQL  G   V ++++                        
Sbjct: 213 KVLGFDTEFVG-----DQLAVVQLCAGPH-VLLVQVPSCRQPASEQQQQQTKKKAQGGKE 266

Query: 58  ----AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT- 112
               A     P L  +L D    K       D  +++  FGV++R      +A    R  
Sbjct: 267 QPWRAPFTLLPELKALLCDPGIPKAAAEAWQDALMVYMGFGVKLRGGLDLTVAVPPNRAD 326

Query: 113 ---YTNQHGLKDNLKELLGI--NISKAQQ--SSDWSADDLSDEQLQYAASD--VVH 159
                N+ GL D  +       +++K +    S W +  L D+Q++YAA D  V +
Sbjct: 327 RQRGRNKLGLFDIFRTFFSAADHVAKDETIDHSKWRSSCLDDQQMRYAALDAFVSY 382


>gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei]
          Length = 615

 Score = 49.2 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 41  AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 100

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 101 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 158

Query: 133 K-------AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           K         Q   +    L+    +YAA D      L      ++ R 
Sbjct: 159 KYEDVAGQGAQQIGFDEVPLAQA-FEYAAEDADITLQLHHALYPQIARE 206


>gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al
           Hakam]
 gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
 gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
          Length = 315

 Score = 49.2 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
           + ++    +   H L+   K +LGI +S
Sbjct: 124 LLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1]
          Length = 912

 Score = 49.2 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 1/92 (1%)

Query: 42  VQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           + L+   G        A  + +       + D +R K+ H  +  + V            
Sbjct: 368 IALAAASGPAVCFDPSAVDEPDERAFADWIADPERPKVMHDAKRVMRVFDEQGWAVAGAA 427

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
             T +A+ L +       L     E LG  +S
Sbjct: 428 MDTALAAYLVKPGRRSFALDALSVEYLGRELS 459


>gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
 gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
          Length = 318

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAGQK--------- 61
            +D + +D ET G  P  D++  +Q++          D  V  +                
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGI 67

Query: 62  ------NAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR--VRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|170085027|ref|XP_001873737.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651289|gb|EDR15529.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 908

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 34/161 (21%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM---LVDEKREKI 78
            + +DTE        D      ++ G+  V I +++    N      +   L + +  K+
Sbjct: 553 VVGLDTE-------WD------IAYGNE-VWIFQLSEHIANGSFPAQLSTFLANSQILKV 598

Query: 79  FHYGRFDIAVLFYT--------FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                 D+  L            G+ +  +     A         +  L D   + L   
Sbjct: 599 RRNVLLDLKNLQEDSESSTPFVGGIDLGRL-----AKEKNVVSDARASLGDLCIKTLSCI 653

Query: 131 ISKAQQ---SSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           + K      S DWS   L+DEQ+QYAA D      +  + T
Sbjct: 654 LPKDLNIRISPDWSG-PLTDEQIQYAALDAWASLKIYEKLT 693


>gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
 gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
          Length = 318

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAGQK--------- 61
            +D + +D ET G  P  D++  +Q++          D  V  +                
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGI 67

Query: 62  ------NAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR--VRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
 gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
          Length = 315

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAGQK--------- 61
            +D + +D ET G  P  D++  +Q++          D  V  +                
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGI 64

Query: 62  ------NAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR--VRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
 gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
          Length = 315

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAGQK--------- 61
            +D + +D ET G  P  D++  +Q++          D  V  +                
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPSRITSLTGI 64

Query: 62  ------NAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR--VRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGFPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|330952602|gb|EGH52862.1| ribonuclease D [Pseudomonas syringae Cit 7]
          Length = 59

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 8  EGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR 55
          +  +   CA  + +  +A+DTE + +        ++Q+  G     I  
Sbjct: 11 DDSLARHCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGQSAWLIDP 59


>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
 gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
          Length = 950

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 34/140 (24%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-------------------------- 56
           IA+DTET  L      L  V L+  +G    I +                          
Sbjct: 354 IALDTETDSLDSMSANLVGVSLALANGEACYIPLVHKTLVTTSAEQGDLFANEMETVGYE 413

Query: 57  -AAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT 110
            A  Q N       L  +L + + +KI    ++D+ V     G+ V+ V F T + S   
Sbjct: 414 LAKNQLNLTVCLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQGVAFDTMLESYTL 472

Query: 111 RTYTNQHGLKDNLKELLGIN 130
            + T +H + D  +  LG  
Sbjct: 473 NS-TGRHNMDDLAERYLGHK 491


>gi|195589974|ref|XP_002084724.1| GD14419 [Drosophila simulans]
 gi|194196733|gb|EDX10309.1| GD14419 [Drosophila simulans]
          Length = 267

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 5/129 (3%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
           ++ G+GT  I  I A       L  +L  ++  K+ HY       L +   + +  +F T
Sbjct: 83  VATGNGT-YIFDIKALGSIFLELAKILEADQPRKVIHYSHRIADHLLHRHRISLGGIFDT 141

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKA----QQSSDWSADDLSDEQLQYAASDVVH 159
            +A  L       + L + +  + G+ + K     +   +++A  L+  Q++Y A  V  
Sbjct: 142 FVALCLISETRIPYTLPEAISLVFGLPMEKVTEACESQRNFTARPLTHSQMRYLAKMVQL 201

Query: 160 LHALRLQFT 168
            H +  +  
Sbjct: 202 QHIMHDRLN 210


>gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley]
 gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley]
          Length = 608

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 13/140 (9%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58
            +  HE D+          +  + +DTET GL   +D   + ++Q         ++ +  
Sbjct: 16  NVVEHEDDLDGFESFIRSNLRILGLDTETTGLNIYQDDFGIRLIQFGNP-WESWVLPVER 74

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112
           G       V  L   +R  + H   FD+ V+  T GV +  ++     TKI S L   R 
Sbjct: 75  GGAFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133

Query: 113 YTNQHGLKDNLKELLGINIS 132
           Y    G    L+EL    I 
Sbjct: 134 YKEG-GTGHKLEELTKFYID 152


>gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442]
 gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442]
          Length = 930

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 336 TTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAP 395

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V      + +  +     +AS +  ++
Sbjct: 396 EQLDLQDVLGRLKPHLENPTLKKIGQNLKYDQHVFANY-DIALNGIAGDAMLASYIIESH 454

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    YAA D      L
Sbjct: 455 L-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADFALRL 509

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 510 EAHLRAQMDEK 520


>gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5]
 gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5]
          Length = 608

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 13/140 (9%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58
            +  HE D+          +  + +DTET GL   +D   + ++Q         ++ +  
Sbjct: 16  NVVEHEDDLDGFESFIRSNLRILGLDTETTGLNIYQDDFGIRLIQFGNP-WESWVLPVER 74

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112
           G       V  L   +R  + H   FD+ V+  T GV +  ++     TKI S L   R 
Sbjct: 75  GGAFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133

Query: 113 YTNQHGLKDNLKELLGINIS 132
           Y    G    L+EL    I 
Sbjct: 134 YKEG-GTGHKLEELTKFYID 152


>gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
 gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
          Length = 315

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|156059756|ref|XP_001595801.1| hypothetical protein SS1G_03891 [Sclerotinia sclerotiorum 1980]
 gi|154701677|gb|EDO01416.1| hypothetical protein SS1G_03891 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 268

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 21/139 (15%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--HGLK--- 120
           L  +L  +   K+    R D   L+  FG+++  V   ++    TR Y+     GL    
Sbjct: 101 LKSILESQLIPKVIFDVRNDSDALYSHFGIKLGGVIDLQLMELATRFYSRDFLCGLGKCM 160

Query: 121 --DNLK--ELLGIN------------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
             D ++  E L +               K      ++   L    + Y   DV  L  L 
Sbjct: 161 ENDLVQTPEELKVRGAIKQRGIEIFAPEKGGSYEVFNDRPLDPAIVDYCIQDVQLLPELW 220

Query: 165 LQFTEKLQRLGRSDLATSC 183
             +  KL +L +   A   
Sbjct: 221 EVYNAKLSKLHKRWAAKIE 239


>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
          Length = 959

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 26/183 (14%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---------------V 67
           + +DTET  + P + +L  + LS   G    I +A    +   L                
Sbjct: 371 VCLDTETTSIDPMQAQLVGLSLSVEPGQACYIPVAHRGPDVSGLEAAGQLAREAVLARMK 430

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
             L D  R+K+  + ++D  V     G+ +R +   T + S +  ++ N HG+    + +
Sbjct: 431 PWLEDASRKKVGQHLKYDAHVFANH-GIALRGIAHDTMLQSYVLASHRN-HGMDALAERV 488

Query: 127 LGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
           L +          K      +    L     +YAA D      L      K+    +   
Sbjct: 489 LHLKTITYEEVCGKGASQIGFDEVPLDRA-TEYAAEDADITLRLHRAMYPKVAEDDKLRY 547

Query: 180 ATS 182
              
Sbjct: 548 VYE 550


>gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
 gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
          Length = 318

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNNVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 315

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
 gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
          Length = 318

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNNVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
           12442]
 gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
           12442]
          Length = 315

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 40/147 (27%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDII------------------ 54
           D + +D ET G  P  DR+  +Q++          D  V  +                  
Sbjct: 9   DYVVIDFETTGFNPYNDRI--IQVAAVRYRNHELADQFVSFVNPERFIPNRITSLTGITN 66

Query: 55  ----RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRPV-FCTKI 105
                    Q+  P  +  L ++    + H   FD+  L     +      + +   T  
Sbjct: 67  YRVSDAPTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNAKMLRLPEPKNIVIDTVF 124

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINIS 132
            ++    +   H L+   K +LGI +S
Sbjct: 125 LAKRYMKHARNHKLETL-KRMLGIRLS 150


>gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
 gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
          Length = 318

 Score = 48.8 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNNVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
 gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
          Length = 976

 Score = 48.8 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 35/214 (16%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------QKN 62
             +  + +++DTET  L P    L  + L  G+ T D+  I  G             ++ 
Sbjct: 376 LEKTNEIVSLDTETNSLNPIDAELVGIGLCLGEETDDLFYIPLGHQTKKETTNQLSIEEV 435

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121
              +   + D K+EK     +FD  + F   G+ ++ V F T +A  L      +HGL +
Sbjct: 436 FSKIRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTFDTLLADYLLNNQ-EKHGLSE 493

Query: 122 NLKELLG---------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK-- 170
               L G         +  +K     D       DE   Y   DV     +   F E+  
Sbjct: 494 ISFRLFGFKPPSFKETVGKNKDFSFVD------IDEASVYCGYDVFLTFKIVKIFKERFS 547

Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLGWENVDI 203
           +++     L            +++++ G   +DI
Sbjct: 548 MEKDELIKLFEEIELPLEPVLSQMEMNGIT-IDI 580


>gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 318

 Score = 48.8 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|156100329|ref|XP_001615892.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148804766|gb|EDL46165.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
          Length = 1114

 Score = 48.8 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 50/154 (32%), Gaps = 13/154 (8%)

Query: 34  PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
             R    ++ +   +    +  +   +     L  +  D    KI +  +  I V+   F
Sbjct: 495 TYRGFTSLILVGTEECDYILDALHIFE-QMHALNEVTTDPNILKIVYKSKSIIPVMQRDF 553

Query: 94  GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
            +    +    + S        ++ L   +     ++++ A Q  +     LS + +Q  
Sbjct: 554 SIYFVNIIDISVCSDFLNV---RNSLAFLVHNYFHVSVNSAGQGFNALTRPLSTDAVQNL 610

Query: 154 ASDVVHLHALRLQFTEKL---------QRLGRSD 178
                +L+ L       L         +R G+++
Sbjct: 611 RMPFHYLYYLFEYVKTDLYFNYIFAHYRREGQTE 644


>gi|327198385|ref|YP_004306959.1| DNA polymerase I [Streptococcus phage Dp-1]
 gi|314912687|gb|ADT64078.1| DNA polymerase I [Streptococcus phage Dp-1]
          Length = 779

 Score = 48.8 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 19/127 (14%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------AGQKNAPNLVGML---V 71
           +D ET GL    D L  V L           +             Q +   +  ML   V
Sbjct: 88  IDVETDGLDTIHDELAGVCLYSPSQKGIYAPVNHVSNMTKMRIKNQISPEFMKKMLQRIV 147

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDN----LKEL 126
           D     I+H  +FD+  +++  GV++  P + T +A+ L       H LK      ++  
Sbjct: 148 DSGIPVIYHNSKFDMKSIYWRLGVKMNEPAWDTYLAAMLLN-ENESHSLKSLHSKYVRNE 206

Query: 127 LGINISK 133
               ++K
Sbjct: 207 ENAEVAK 213


>gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708]
 gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708]
          Length = 982

 Score = 48.8 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRI-------AAGQKNAPNLVGM 69
             +A DTET  L PR     +V +      G      I +                L  +
Sbjct: 385 KPVAWDTETTALEPRDA--ALVGIGCCWGTGSDEAAYIPVGHKIGHNLQLDLVVSALRPI 442

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L +    K F   +FD  +        V  VF T +AS L    T  H L D     LG+
Sbjct: 443 LENANYPKTFQNAKFDRLIFKCQGINLVGVVFDTMLASYLINPDTT-HNLSDLSLRNLGL 501

Query: 130 NI 131
            +
Sbjct: 502 QL 503


>gi|226502476|ref|NP_001149685.1| Werner syndrome ATP-dependent helicase [Zea mays]
 gi|195629436|gb|ACG36359.1| Werner syndrome ATP-dependent helicase [Zea mays]
          Length = 204

 Score = 48.8 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           + ++Q+   D    + +I         L   L D +   +      D+A L   + + V 
Sbjct: 68  VAVLQICV-DHRCLVFQILQADYIPDALSRFLADRRFTFVGVGISGDVAKLRAGYRLGVA 126

Query: 99  PVFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAA 154
                ++ +   L      + GL+  + E++G+ + K    + S W    LS++QL+YA 
Sbjct: 127 SAVDLRVLAADTLEVPELLRAGLQTLVWEVMGVQMVKPHHVRVSAWDTPTLSEDQLKYAC 186

Query: 155 SDVVHLHALRLQFTE 169
           +D      +  +  E
Sbjct: 187 ADAFASFEVGRRLYE 201


>gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
 gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
          Length = 315

 Score = 48.8 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAGQK--------- 61
            +D + +D ET G  P  D++  +Q++          D  V  +                
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPERPIPNRITSLTGI 64

Query: 62  ------NAPNLVGML------VDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP +  +L      +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPFFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY]
 gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
          Length = 922

 Score = 48.8 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 65/199 (32%), Gaps = 27/199 (13%)

Query: 13  AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65
               AR       A+DTET  L   R  +  V  S   G    I +A    +AP      
Sbjct: 336 DGWLARLKAAPLAALDTETTSLDELRAEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLA 395

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGL 119
                L   L D    K+  + ++D  V     G++VR     T + S +   +   HGL
Sbjct: 396 EVLERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYAHDTMLQSYVLEVHKP-HGL 453

Query: 120 KDNLKELLGIN-IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               +   G   IS      K  +   ++   +      Y+  D      +      +LQ
Sbjct: 454 TSLAERHTGRTGISYEDLCGKGAKQIPFAQVPVDKA-AAYSCEDSDQTLDVHRVLWPQLQ 512

Query: 173 R----LGRSDLATSCCNFL 187
                 G  +L  +C   L
Sbjct: 513 ADDKLRGIYELEMACSETL 531


>gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 324

 Score = 48.8 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 16  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 73

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 74  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPTNKVIDTV 132

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 133 FLAKKYMKHAPNHKLETL-KRMLGIRLS 159


>gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
 gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
          Length = 318

 Score = 48.8 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPELSIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNNVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
 gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
          Length = 315

 Score = 48.8 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRP-VFCTK 104
                 +AP       L    +      + H   FD+  L     +      +  V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLLEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 315

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPTNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
 gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
          Length = 997

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 38/132 (28%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLK 124
           L  +L D+   KI    ++D+ ++    G+ V P   T + S +    T   HG+     
Sbjct: 470 LKPLLEDKSVLKIAQNLKYDLVIMSRY-GIDVAPFDDTMLISYVLDAGTPHGHGMDALAD 528

Query: 125 ELLG---------------------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           + LG                     ++I KA                 +AA D      L
Sbjct: 529 KWLGHTPLQLKDVIGSGKNSVGFDQVDIDKAT---------------AHAAEDADVTLRL 573

Query: 164 RLQFTEKLQRLG 175
            L    +L   G
Sbjct: 574 WLVLKPRLAATG 585


>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
 gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
          Length = 881

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 23/142 (16%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRVRPV-FCTKIASRLTRTYTNQHG 118
              +  +  DE  +KI H    DI    V+   + +  +   F TKIA+ L +   + + 
Sbjct: 377 LELIKKLFEDENIKKISH----DIKNIYVILRKYDIDAKNFSFDTKIAAYLLQPSKSDYI 432

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           L+D + E L INI ++ + S                 +   +  +  +  ++++     +
Sbjct: 433 LRDIILEKLSINIHESDEESK--------------IKETYCIKEIYEKLQKEIKSANMEE 478

Query: 179 L-ATSCCNFLMDRAELDLLGWE 199
           L        +   A ++  G++
Sbjct: 479 LFYNVELPLVKVLASMECEGFK 500


>gi|320592146|gb|EFX04585.1| 3'-5' exonuclease [Grosmannia clavigera kw1407]
          Length = 340

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 48/210 (22%)

Query: 10  DIPAECAA---------RYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAG 59
           D PA  AA             ++ +D E + L  R   + I+Q+         ++ +   
Sbjct: 117 DTPAAVAAFVDMLYALPTTPPSLYIDVEGVNL-SRVGTVSIIQVFVLPKSRAYLLDVHTL 175

Query: 60  QKNAPN--------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTR 111
           +  A +           +L      K+    R D   LF  F +R+  +   ++    TR
Sbjct: 176 KDKAFSTPGTRGRTFQDLLESAAIPKVIFDVRNDSDALFGRFRIRLAGIQDLQLMELATR 235

Query: 112 TY--TNQHGLKDNLKELLGIN-ISKAQQSSDWSA----------------------DDLS 146
           +Y      GL   +++   ++   K    +DW A                        LS
Sbjct: 236 SYDKGRVKGLAKCIEKDAQLSPADK----ADWKATKEKGVRLFLPGQGRRRHAFNERPLS 291

Query: 147 DEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           ++  +Y   DV  L  L   +  +L R  R
Sbjct: 292 EDVRRYCIQDVQFLPQLWEYYNSRLTRAWR 321


>gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 315

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
 gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
          Length = 318

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHATNHKLETL-KRMLGIRLS 153


>gi|171692849|ref|XP_001911349.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946373|emb|CAP73174.1| unnamed protein product [Podospora anserina S mat+]
          Length = 575

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 24/153 (15%)

Query: 39  LCIVQLSPGDGTVD---IIRIAAGQKNAPNLVGMLVDEKREK----IFHYGRFDIAVLFY 91
           + ++Q++           +   +     P L  +L D K  K    +          +  
Sbjct: 225 VSLIQIASPTRIALFHVALYPKSKPLATPLLKKILEDPKITKVGVWVMGDASK----VQR 280

Query: 92  TFGVRVRPVFCTKIASRLTRT-YTNQHGL--KDNL------KELLGINISKAQ--QSSDW 140
              +  R +F      +L +   + +H L  K  +      +E+L + + K    ++S+W
Sbjct: 281 YLKITPRGLFELSHLYKLVKYCESGEHSLINKKLVSLGKQAEEVLKLPLYKELDVRTSNW 340

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFT-EKLQ 172
               L  +Q+ Y+ASD      +      ++LQ
Sbjct: 341 LQ-SLRLDQIIYSASDAYAGVQIYSMLNHQRLQ 372


>gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 985

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 64/186 (34%), Gaps = 33/186 (17%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------------- 68
            +A+DTET  L P +  L  +    G+   DI  I  G  +   L               
Sbjct: 386 PVAIDTETTSLNPFKAELVGLGFCWGENLDDIAYIPLGHNSQGELKDQSIRQQLPIQNVI 445

Query: 69  -----MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDN 122
                 L      K+    ++D  +  +  G+ +  V   T +A  L+ + TN+H L + 
Sbjct: 446 QSLTPWLSSSYHPKVLQNAKYDRLIFLHN-GIPLEGVVMDTLLADYLSNS-TNKHSLDEI 503

Query: 123 LKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            K   G         + K +   D   D  S     Y   DV     L  +   +LQ  G
Sbjct: 504 AKREYGFTPINFKELVGKGETFKDVDIDTAS----IYCGMDVYLTRKLSFRIRSQLQTKG 559

Query: 176 RSDLAT 181
            S+L  
Sbjct: 560 -SELIQ 564


>gi|223986450|ref|ZP_03636454.1| hypothetical protein HOLDEFILI_03766 [Holdemania filiformis DSM
           12042]
 gi|223961602|gb|EEF66110.1| hypothetical protein HOLDEFILI_03766 [Holdemania filiformis DSM
           12042]
          Length = 171

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 24/145 (16%)

Query: 10  DIPA-ECAARYVDAIAVDTETLGLMPRR--DRLCI---------VQLSPGDGTVDIIRIA 57
           D+P+ +   + V  +A D ET      R   +  +         V  S  +G    + + 
Sbjct: 9   DLPSIKRYLQGVTPVAFDFETTSDAAYRTEPKAALDAHKLHIVSVSFSTTEGDASNVPLL 68

Query: 58  --------AGQKNAPNLV-GMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIAS 107
                      +    L   +  +    KI H   F+ A+  Y   + V+ P + T  AS
Sbjct: 69  HRIGENCEKQDELWTFLKTEVFENPNIVKIAHNLSFE-AMFLYAKNIIVQMPCYDTIAAS 127

Query: 108 RL-TRTYTNQHGLKDNLKELLGINI 131
           +L  ++     GL  +  +LL   +
Sbjct: 128 QLPLKSKCEFRGLHASCLKLLATTM 152


>gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 937

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 62/178 (34%), Gaps = 21/178 (11%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
              D +A+DTET  L   R R+  +  S        I +A     AP+          L 
Sbjct: 357 EAADLVALDTETDSLDGMRARIVGLSFSVQPYEACYIPLAHTYPGAPDQLPLDEVLAALK 416

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
             L D  R K+    ++D  V     G+ VR  V  T + S +   +   H L+      
Sbjct: 417 SWLEDGSRAKLGQNVKYDTHVFANH-GIAVRGYVHDTLLQSYVLEAHKP-HSLESLASRH 474

Query: 127 LG-INIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           L    +S      K  Q   ++  +L+    +Y+  D      +      +L+   R 
Sbjct: 475 LDRKGLSYEDVAGKGAQQIPFAQVELTRA-TEYSGEDSDMTLDVHRVLWPQLEAAPRL 531


>gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
 gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
          Length = 315

 Score = 48.5 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRP-VFCTK 104
                 +AP       L    +      + H   FD+  L     +      +  V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLLEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 315

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
 gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
          Length = 966

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 33/178 (18%)

Query: 20  VDAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNL 66
              +  DTET  L P    L    C      G  + D+  I                  L
Sbjct: 375 HQPVTWDTETTSLDPIEATLVGIGC----CWGHQSTDVAYIPLNHTEGEQLPQTEVLAAL 430

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             +L  ++  K F   +FD  VL +        VF T +AS + R   + H L D     
Sbjct: 431 RSILESDQYPKAFQNTKFDRIVLLHQGIQLAGVVFDTMLASYVLRPE-DSHKLSDLCHRY 489

Query: 127 L---------GINISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL 174
           L          + I K Q  ++     L   ++  Y   D      L  +   +L++ 
Sbjct: 490 LENIKSLNYKDLEIPKTQTIAN-----LDISRVAHYCGMDAYATFKLVPKLLAELEKA 542


>gi|42766600|gb|AAS45430.1| At4g13870 [Arabidopsis thaliana]
          Length = 141

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 8/131 (6%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           ++  VQ+       D++ I         L  ++ D    K+      D   LF+ +GV +
Sbjct: 5   KVATVQICVDSNYCDVMHIFHSGIPQS-LQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSI 63

Query: 98  RPVFC-TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAA 154
           + V   + +A++       + GL    + L+   + K    +  +W    LS +QLQYAA
Sbjct: 64  KDVEDLSDLANQKIGG-DKKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYAA 122

Query: 155 SDV---VHLHA 162
           +D     HL+ 
Sbjct: 123 TDAYASWHLYK 133


>gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
 gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
          Length = 920

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 1/92 (1%)

Query: 42  VQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           + L+ G G       +   + +       + D  R K+ H  +  + V            
Sbjct: 376 IALATGSGPAAFFDPSQLDEADERTFAEWIADPDRPKVLHNAKGIMRVFAEHGWSVAGVT 435

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
             T +A+ L +       L     E LG  +S
Sbjct: 436 MDTALAAYLVKPGRRSFELDALSVEYLGRELS 467


>gi|189193621|ref|XP_001933149.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978713|gb|EDU45339.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 763

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 40/145 (27%)

Query: 39  LCIVQLSPGDGTVD----IIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTF 93
           + +VQL+  +        +      +K  P  L  +L      K+    + D   L    
Sbjct: 229 VSLVQLACENRIALFHLALFPGKKVEKLMPPSLKAVLESPNIYKVGVAVKGDFTRLEKYL 288

Query: 94  GVRVRPVF--------------C-TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS- 137
           G++ + VF                +KI+ +L        GL   + + L + + K +Q  
Sbjct: 289 GIQPQGVFELSRLHNLVEWHDVDPSKISKKL-------VGLAAQVHQHLQLPLYKGEQLD 341

Query: 138 -----------SDWSADDLSDEQLQ 151
                      SDWS   LS EQ+ 
Sbjct: 342 DDPEGTASVRESDWSL-PLSLEQIH 365


>gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579]
 gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
          Length = 315

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHATNHKLETL-KRMLGIRLS 150


>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 952

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 35/141 (24%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------------ 64
           IAVDTET  L      L  +  +  +G    I +   QK  P                  
Sbjct: 355 IAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQKAQPQQADMFGDEERSESPSSD 414

Query: 65  --------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
                          L  +L++ + +KI    ++D+ +     G+ ++ V F T I S  
Sbjct: 415 ELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAFDTMIES-Y 472

Query: 110 TRTYTNQHGLKDNLKELLGIN 130
           T+  T +H + D     LG  
Sbjct: 473 TQNSTGRHNMDDLAARYLGHK 493


>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 952

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 35/141 (24%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------------ 64
           IAVDTET  L      L  +  +  +G    I +   QK  P                  
Sbjct: 355 IAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQKAQPQQADMFGDEERSESPSSD 414

Query: 65  --------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
                          L  +L++ + +KI    ++D+ +     G+ ++ V F T I S  
Sbjct: 415 ELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAFDTMIES-Y 472

Query: 110 TRTYTNQHGLKDNLKELLGIN 130
           T+  T +H + D     LG  
Sbjct: 473 TQNSTGRHNMDDLAARYLGHK 493


>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
          Length = 923

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R ++  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLGDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
          Length = 952

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 35/141 (24%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------------ 64
           IAVDTET  L      L  +  +  +G    I +   QK  P                  
Sbjct: 355 IAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQKAQPQQADMFGDEERSESPSSD 414

Query: 65  --------------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
                          L  +L++ + +KI    ++D+ +     G+ ++ V F T I S  
Sbjct: 415 ELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAFDTMIES-Y 472

Query: 110 TRTYTNQHGLKDNLKELLGIN 130
           T+  T +H + D     LG  
Sbjct: 473 TQNSTGRHNMDDLAARYLGHK 493


>gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121]
 gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121]
          Length = 925

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +     A DTET  L      L    +S   G    I +A   + AP           + 
Sbjct: 345 QQAPLFAFDTETTSLNYMAAELVGFSVSVEAGKAAYIPVAHDYEGAPEQLDRDWVLEQIK 404

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L D  + K+  + ++D  VL     + ++ + F T + S +  +  N+H +    K+ 
Sbjct: 405 PVLEDASQLKVGQHLKYDANVLANY-DIELKGIEFDTMLESYIFNSTANRHDMDSLAKKF 463

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
           L       ++ +   A   +  Q++      YAA D      L      KL++ 
Sbjct: 464 LSHKSVSFEEIAGKGAKQKTFNQIELEQAAFYAAEDADITFRLHQAIWAKLEKT 517


>gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 315

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|56693107|ref|YP_164694.1| hypothetical protein LP65_gp059 [Lactobacillus phage LP65]
 gi|54633608|gb|AAV35879.1| orf59 [Lactobacillus phage LP65]
          Length = 988

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 30/154 (19%)

Query: 15  CAARYVDAIAVDTETLGLMPRR--DRLCIVQLSPGDGTVDIIRIAAG----------QKN 62
             A     I +D ET  L   R   R+ ++ +S  D    +I I             Q  
Sbjct: 192 LKAPLYKIIGIDFETNTLESWRTNARMTMMSISWKDHQGVVIPIDKTGFQPFSEEEKQDI 251

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-RVRPVFCTKIA--------------- 106
             N+  +   +K  K+ H G+FDI +L    G+ R      T++                
Sbjct: 252 KHNVNQIFKSDKIWKVLHNGKFDITMLKDVNGLDRSIKCIDTEVMYYVGFSQAKKVKKGL 311

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
            ++ R +T+  G +  L+E     + K  +  +W
Sbjct: 312 KQIARAFTDMGGYEQPLEEFKNEYLEKHYK--NW 343


>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
 gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
 gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
          Length = 926

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R  +  +  S   G    + +A    + P           L   L D 
Sbjct: 352 AFDTETTSLDPMRAEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 412 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 469

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 470 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 517


>gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 622

 Score = 48.5 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R  +  +  S   G    + +A    + P           L   L D 
Sbjct: 48  AFDTETTSLDPMRAEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 107

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 108 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 165

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 166 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 213


>gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 315

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 695

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 51/197 (25%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDII-----RIAA 58
           AE     +  +  DTET GLMP +D +  VQ++              +D +      I  
Sbjct: 487 AEARLEDLTYVVFDTETTGLMPSQDEI--VQIAAVRIVNGRRVEAEVLDTLVNPHRPIPP 544

Query: 59  GQKNAPNLVGML--VDEKR--------------EKIFHYGRFDIAVLFYT---FGVRV-R 98
                  +   +                       + H   FD+  L       G R   
Sbjct: 545 SSTEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGRRFDN 604

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
           P+  T + S +    ++ H L       LGI I +  + +              A  D V
Sbjct: 605 PILDTVLLSAVLFGQSDVHSLDALTHR-LGITIPEEARHT--------------AIGDTV 649

Query: 159 HLHALRLQFTEKLQRLG 175
                 L+    LQ  G
Sbjct: 650 ATADAFLKLLPMLQGRG 666


>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
 gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
          Length = 923

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R  +  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMRAEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 620

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R  +  +  S   G    + +A    + P           L   L D 
Sbjct: 46  AFDTETTSLDPMRAEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 105

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 106 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 163

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 164 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 211


>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
 gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
          Length = 923

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P R  +  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMRAEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 GKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L+    +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLAQA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
          Length = 695

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 51/197 (25%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDII-----RIAA 58
           AE     +  +  DTET GLMP +D +  VQ++              +D +      I  
Sbjct: 487 AEARLEDLTYVVFDTETTGLMPSQDEI--VQIAAVRIVNGRRVEAEVLDTLVNPHRPIPP 544

Query: 59  GQKNAPNLVGML--VDEKR--------------EKIFHYGRFDIAVLFYT---FGVRV-R 98
                  +   +                       + H   FD+  L       G R   
Sbjct: 545 SSTEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGRRFDN 604

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
           P+  T + S +    ++ H L       LGI I +  + +              A  D V
Sbjct: 605 PILDTVLLSAVLFGQSDVHSLDALTHR-LGITIPEEARHT--------------AIGDTV 649

Query: 159 HLHALRLQFTEKLQRLG 175
                 L+    LQ  G
Sbjct: 650 ATADAFLKLLPMLQGRG 666


>gi|21805698|gb|AAM76756.1| hypothetical protein [Arabidopsis thaliana]
          Length = 239

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD---IAVLFYTFGVRVR 98
           +QL  G+    II+++  ++    L   L DE    +  +   D   +    +   +   
Sbjct: 76  LQLCVGN-RCLIIQLSHCKRIPEVLRSFLEDETITFVGVWNSQDQGKLERFRHQLEIW-- 132

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAAS 155
            +           T       +  ++E LG   +   K    S+W A  LS +Q+  A+ 
Sbjct: 133 RLLDI---RHYLPTRLLNSSFEKIVEECLGYKGVRKDKEICXSNWGARSLSHDQIVQASD 189

Query: 156 DVVHLHAL 163
           DV     L
Sbjct: 190 DVYVCCKL 197


>gi|302421258|ref|XP_003008459.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261351605|gb|EEY14033.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 586

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 25/150 (16%)

Query: 39  LCIVQLSPGDGTVD----IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94
           + ++QL+           +   A     AP    ++ D    K     + D   L   F 
Sbjct: 207 VSLIQLASPSRIALFHVALFPGADDDLMAPTFRQIMEDPDVTKAGVNIKGDCTRLRNWFD 266

Query: 95  VRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKAQ--QSSDWSAD 143
           V  R  F      +L +  T+            L   +++ LG+ + K    +SSDWS  
Sbjct: 267 VGTRGTFELSNLYKLVKHSTSGRVDLVNKRLVSLATQVQDCLGLPMFKGPDVRSSDWSQA 326

Query: 144 DLSDEQL---QYAASDVVHLHALRLQFTEK 170
            L+ +Q+    YA         L     E+
Sbjct: 327 -LNMQQITCDAYAG------LQLYHVLDEQ 349


>gi|226503994|ref|NP_001150086.1| LOC100283715 [Zea mays]
 gi|195636594|gb|ACG37765.1| 3-5 exonuclease/ nucleic acid binding protein [Zea mays]
          Length = 200

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 22  AIAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
            + +D E          +  I+QL  G     I ++         L   L D     +  
Sbjct: 46  VVGLDVEWRPSFSRAYSKTAILQLCVG-RRCLIFQLLHADYVPNTLDEFLSDPDYTFVGV 104

Query: 81  YGRFDIAVLFYTFGVRVRPVFC-TKIASR-LTRTYTNQHGLKDNLKELLGINISKAQ--Q 136
               D+  L   + + V       ++A++ +        GL+   + ++  ++ K Q  +
Sbjct: 105 GVAADVERLENDYDLEVANAEDLAELAAKEMGHPDLRNAGLQGIARVVMDAHVEKPQWVR 164

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           +  W A  LSDEQ++YA  D      +    
Sbjct: 165 TGPWDASSLSDEQIEYATIDAFVSFEVGRML 195


>gi|121711303|ref|XP_001273267.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus clavatus
           NRRL 1]
 gi|119401418|gb|EAW11841.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus clavatus
           NRRL 1]
          Length = 391

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 30/176 (17%)

Query: 39  LCIVQLSPGDGTVD----IIRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDIAVLFYT 92
           + ++Q++  +        + + A   ++  A +L  +L   +  K+    + D   L   
Sbjct: 167 VSLIQIANSERIALFQIALFKPAKKAEDFVAASLRKILESPEIMKVGVTIKADCTRLRKY 226

Query: 93  FGVRVRPVFCTKIASRL--TRTYTNQ---------HGLKDNLKELLGINISKA--QQSSD 139
            G+  R    T   S L     Y+             L D ++E  G+ + K    + S+
Sbjct: 227 LGIDTRG---TLELSHLYKLVKYSESNPKLINKRPVSLSDQVEEHFGMPLEKDGNVRCSN 283

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           W+   L+  Q+QYAA+D      L      K +       A      L + AELDL
Sbjct: 284 WATA-LNYRQVQYAATDPYACFRLFDTMNTKRK-------ALDPMPPLPEYAELDL 331


>gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114]
 gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114]
          Length = 935

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 31/195 (15%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A        D I +DTET  L      L  + ++   G    I +      AP
Sbjct: 335 TTEAQFAALLDKLSQADKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 394

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVF-CTKIASRL 109
                      L   L +   +KI    ++D  V         G+ +  +     +AS +
Sbjct: 395 EQIDLQDVLGRLKPHLENSALKKIGQNLKYDQHVFANYGIALNGIALNGIAGDAMLASYI 454

Query: 110 TRTYTNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVH 159
             ++   HGL +  +  LG+            +K    +D +    ++    YAA D   
Sbjct: 455 IESHL-GHGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATE----YAAQDADF 509

Query: 160 LHALRLQFTEKLQRL 174
              L      ++   
Sbjct: 510 ALRLEAHLRAQMDAK 524


>gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7]
 gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7]
          Length = 880

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYT 114
            +     L  +  ++K EK+ H     I V +  F           F T+IA+ L  +  
Sbjct: 372 NEDTLKCLKDIFENDKIEKVSHN----IKVPYTVFKKMGINFTSVKFDTEIAAYLIDSSR 427

Query: 115 NQHGLKDNLKELLGINI 131
            ++GL   +++ L I +
Sbjct: 428 GEYGLNSIIQDYLKIML 444


>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
 gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
          Length = 946

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 26/190 (13%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL--------- 66
                + + +DTET  + P   +L  + LS   G    I +A    +   L         
Sbjct: 351 LLDASELVCIDTETTSIDPMLAQLVGLSLSVEPGQACYIPVAHRGPDVSGLDAAGQLSRE 410

Query: 67  ------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119
                    L D  R+K+  + ++D  V     G+ +R +   T + S +  ++ N HG+
Sbjct: 411 AVLARMKPWLEDAARKKVGQHLKYDAHVFANH-GIALRGIAHDTMLQSYVLASHRN-HGM 468

Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               + +L +          K      +    L     +YAA D      L      K+ 
Sbjct: 469 DALAERVLHLKTITYEEVCGKGASQIGFDEVPLDRA-TEYAAEDADITLRLHRALYPKVA 527

Query: 173 RLGRSDLATS 182
              +      
Sbjct: 528 EDDKLRYVYE 537


>gi|48429404|gb|AAT42470.1| PolA [Escherichia coli B]
          Length = 179

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121
              L  +L DEK  K+    ++D  +L    G+ +R + F T + S +  +   +H +  
Sbjct: 9   LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAFDTMLESYILNSVAGRHDMDS 67

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
             +  L       ++ +    + L+  Q+      +YAA D      L L+    LQ+
Sbjct: 68  LAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 125


>gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266]
          Length = 931

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K+ H  +  +  L             T++A
Sbjct: 395 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 454

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 455 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 487


>gi|15227581|ref|NP_181155.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
 gi|4678223|gb|AAD26968.1| hypothetical protein [Arabidopsis thaliana]
 gi|50058835|gb|AAT69162.1| hypothetical protein At2g36110 [Arabidopsis thaliana]
 gi|330254113|gb|AEC09207.1| polynucleotidyl transferase, ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 239

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD---IAVLFYTFGVRVR 98
           +QL  G+    II+++  ++    L   L DE    +  +   D   +    +   +   
Sbjct: 76  LQLCVGN-RCLIIQLSHCKRIPEVLRSFLEDETITFVGVWNSQDQGKLERFRHQLEIW-- 132

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAAS 155
            +           T       +  ++E LG   +   K    S+W A  LS +Q+  A+ 
Sbjct: 133 RLLDI---RHYLPTRLLNSSFEKIVEECLGYKGVRKDKEICMSNWGARSLSHDQIVQASD 189

Query: 156 DVVHLHAL 163
           DV     L
Sbjct: 190 DVYVCCKL 197


>gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
 gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
          Length = 915

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K+ H  +  +  L             T++A
Sbjct: 379 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 438

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 439 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 471


>gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
 gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
          Length = 315

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 315

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987]
 gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC
           10987]
          Length = 315

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 659

 Score = 48.1 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 57/196 (29%), Gaps = 52/196 (26%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS---------PGDGTVDIIRIAAGQK------------ 61
           +  DTET GL P  DR+  VQ++          G+    ++                   
Sbjct: 454 VVFDTETTGLDPVADRI--VQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDA 511

Query: 62  ---NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYT---FGVRVRP-VFCTKIASRL 109
               AP++   L       E    + H   FD+  L       G      V  T + S +
Sbjct: 512 MVAGAPDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHFDNQVLDTVLLSAM 571

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
               +  H L    +  LGI I    + +              A  D        L+   
Sbjct: 572 LWGQSAPHSLDALTER-LGIVIPPEARHT--------------AMGDARATAEAYLRLIA 616

Query: 170 KLQRLG--RSDLATSC 183
            L+  G  R +   + 
Sbjct: 617 ALEAKGLDRFEDVLAE 632


>gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
 gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
          Length = 910

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K+ H  +  +  L             T++A
Sbjct: 374 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 433

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 434 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 466


>gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
 gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
          Length = 864

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
           ++     +   L  +L D    KI H G+F    +    G+  R  F T +A+ L  +  
Sbjct: 355 KLLKENSSISFLKQILEDTAIYKITHDGKF-TRNVLRQLGIDFRCQFDTMLAAYLLESSK 413

Query: 115 NQHGLKDNLKELLGINIS 132
            ++ +   + E LG  +S
Sbjct: 414 PRYDIPILVMEYLGKTMS 431


>gi|322705302|gb|EFY96889.1| 3'-5' exonuclease [Metarhizium anisopliae ARSEF 23]
          Length = 281

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 31/153 (20%)

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA---------SRLTRTYTN 115
           +L  +L  E   K+F   R D   LF  +G+RV  +   ++          +R      N
Sbjct: 86  SLKNILESENIPKVFFDIRNDSNALFSHYGIRVGGIRDLQVMEFATRRGPPARFITGLAN 145

Query: 116 QHGL---------------KDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
                              KD    L   + +K      ++   L  E  +Y+A DV  L
Sbjct: 146 CIKYDCPMTESQKQSWLQMKDRAGRL--YDPNKGGGYEVFNERPLRREICEYSAQDVALL 203

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
             L   ++ KL    ++         ++D A L
Sbjct: 204 PKLWEAYSTKLSHSNKAFW-----QMMVDDATL 231


>gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
 gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
          Length = 470

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 59/201 (29%), Gaps = 51/201 (25%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----------GDGTVDIIRIAA 58
            D+  +   R +  +  DTET GL+P +D +  VQ+            G+    ++    
Sbjct: 265 DDVFEDRPLRDLCFVVFDTETTGLLPHKDEI--VQIGAVRVIKGRIVEGEQLDMLVDPGI 322

Query: 59  GQKNAP------NLVGMLVDEKREK--------------IFHYGRFDIAVLFYTFGVR-- 96
               A       N   +L      K              + H   FD+A L         
Sbjct: 323 PIPAASTRVHKINDAMVLGAPDIAKAGLIFHQFSRDAVIVAHNAPFDMAFLHRHAKRMGV 382

Query: 97  --VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
               PV  T + S +    +  H L       LG+ I    + +              A 
Sbjct: 383 EWTHPVLDTVLLSAVLFGASETHTLDAVCAR-LGVTIPATLRHT--------------AL 427

Query: 155 SDVVHLHALRLQFTEKLQRLG 175
            D V    + ++    L   G
Sbjct: 428 GDAVATAEVLVRMLPMLTARG 448


>gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
          Length = 892

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K+ H  +  +  L             T++A
Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448


>gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2]
          Length = 892

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K+ H  +  +  L             T++A
Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448


>gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K+ H  +  +  L             T++A
Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448


>gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
          Length = 892

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K+ H  +  +  L             T++A
Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448


>gi|308484203|ref|XP_003104302.1| hypothetical protein CRE_24938 [Caenorhabditis remanei]
 gi|308258271|gb|EFP02224.1| hypothetical protein CRE_24938 [Caenorhabditis remanei]
          Length = 179

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              LKD + E+ G+ + K +  S+W   +L  +Q+ YAA D V LH L
Sbjct: 103 SPSLKDYVHEVTGLEVLKTETMSNWRVLNLRKDQIWYAAMDTVSLHYL 150


>gi|115438991|ref|NP_001043775.1| Os01g0660800 [Oryza sativa Japonica Group]
 gi|55773822|dbj|BAD72360.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|55773961|dbj|BAD72488.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113533306|dbj|BAF05689.1| Os01g0660800 [Oryza sativa Japonica Group]
 gi|125527143|gb|EAY75257.1| hypothetical protein OsI_03144 [Oryza sativa Indica Group]
          Length = 199

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 6/152 (3%)

Query: 23  IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           + +D E      P ++ + ++QL   D    I ++        +L   L       +   
Sbjct: 48  VGLDVEWRPSYGPAQNPVALLQLCV-DRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVG 106

Query: 82  GRFDIAVLFYTFGVRVRPVFCTK-IAS-RLTRTYTNQHGLKDNLKELLGINISKAQQ--S 137
              D   L    G+ V      + +A+ RL R   +Q GL+  ++ ++G ++ K Q+   
Sbjct: 107 VDKDAERLSDDHGLTVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTM 166

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           S W A  LS+EQ++YA  D      +  +   
Sbjct: 167 SRWDASCLSNEQIRYACIDAYVSFEVGRRLLR 198


>gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 315

 Score = 48.1 bits (114), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
 gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
          Length = 318

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHANVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++        H L+   K +LGI +S
Sbjct: 127 FLAKKYMKQAPNHKLETL-KRMLGIRLS 153


>gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI]
 gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
           anthracis str. CI]
          Length = 315

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 923

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 61/205 (29%), Gaps = 26/205 (12%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI   E         R     A+DTET  L P +  L  +  +   G    +        
Sbjct: 325 TIFTIEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPG 384

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           AP           L  +L D    K+  +G++D+ VL     V       T + S +  +
Sbjct: 385 APVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTS 444

Query: 113 YTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS----DEQLQYAASDVVHLH 161
              +H +    +  LG         + K  +         S     E  QYAA D     
Sbjct: 445 GHARHDMDTLARRHLGYETMKYVDLVGKGAKQI-----PFSHVGVQEATQYAAEDADITL 499

Query: 162 ALRLQFTEKLQRLGRSDLATSCCNF 186
            L      KL    R +        
Sbjct: 500 RLHCVLAPKLLAEPRLERVYREIEM 524


>gi|310794900|gb|EFQ30361.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
          Length = 199

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 23/142 (16%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASRLTRTY 113
             G K+   L  +L   K  K+F   R D   LF  FG+++  V   ++   ASR  R  
Sbjct: 24  TPGYKSNQALQSVLESPKITKVFFDVRNDSDALFAHFGIKLDGVQDLQLMEFASRGLRKG 83

Query: 114 T--------NQHGLKDNLKELLGINISKAQQS-----------SDWSADDLSDEQLQYAA 154
                    ++H      +    I + K               + +    L  E L Y  
Sbjct: 84  FLCGLVKCIDKHSPLSPAERREWIKV-KDSGRKLFDPSSGGSYAVFDKRPLPTEILLYCI 142

Query: 155 SDVVHLHALRLQFTEKLQRLGR 176
            DV +L  L L + +KL    R
Sbjct: 143 QDVQYLPQLLLVYNQKLSPDWR 164


>gi|289613453|emb|CBI59597.1| unnamed protein product [Sordaria macrospora]
          Length = 295

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 24/147 (16%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASRLTRT 112
                 +   L  +L D +  K F   R D   L+    VR+  V   ++   ASR    
Sbjct: 67  FTTPGTDGKTLKAILEDPQTSKCFWDVRNDADALWAHHKVRLAGVTDIQLLENASR-VGD 125

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSA-----------------DDLSDEQLQYAAS 155
            T  HGL  +++  L +  ++ ++   W                     L  + +QY  +
Sbjct: 126 KTYLHGLDKSVQSDLVLKWTEKER---WIRTKREVRALMTNNDVFACRPLDTKTMQYCVN 182

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS 182
           DV+ L AL   + ++  +   +     
Sbjct: 183 DVLCLPALHNIYAKRTSKEWLAKAMDE 209


>gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1]
          Length = 892

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAA-GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A    ++       L D+ R K+ H  +  +  L             T++A
Sbjct: 356 DGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448


>gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAA-GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A    ++       L D+ R K+ H  +  +  L             T++A
Sbjct: 356 DGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALAERGWEVAGLTCDTELA 415

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448


>gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis
           KBAB4]
 gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 315

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +  K   + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTKVI-VAHNASFDMRFLKSNVNMLGLPEPKNNVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187]
 gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1]
 gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
 gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH187]
 gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
 gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
          Length = 315

 Score = 47.7 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
 gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
          Length = 931

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 10/185 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-AGQKNAPNLVGM----LVDEKREK 77
           + +D ET GL    D +  +  +        + ++     +      +    L  E  + 
Sbjct: 362 VCIDFETTGLDTLTDEIIGISFAIKSKEAFYLDLSGRTNIDKEACKKLVFDTLAKEDIKI 421

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           I H  +++  ++           F T +A+ L      ++ + D     L  N  K    
Sbjct: 422 IGHNLKYEYKMMRAIDKKMGNMYFDTMVAAYLINPSRGRYNMDDLALSYLSYNTIKYSDI 481

Query: 138 SDWSADDLSDEQL----QYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRAE 192
           +D +   L D +L    +YA  D          F   L      DL        +   A+
Sbjct: 482 TDNAKKTLLDVELKDVVEYACEDADITFRFYEYFAPLLNTYNLEDLFFNVEMPLISVLAD 541

Query: 193 LDLLG 197
           ++  G
Sbjct: 542 MEFDG 546


>gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
 gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
          Length = 917

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 24/180 (13%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI--------------AAGQKNAPN 65
            + IA+DTET  L      L  +  +   G    I +                 Q     
Sbjct: 333 AELIALDTETTSLQAHDAELVGLSFATRAGEAWYIPVGHRSTDLLVPAPQQLPLQHVLAA 392

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           L  +L D  + K  H  ++D  VL    G+ +  +   + + +           L    +
Sbjct: 393 LKPLLEDAAKRKCGHNLKYDAQVLRRA-GIELAGIAADSMLLAYCLYPAKYPPSLDSVAE 451

Query: 125 ELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           + L  +         K  +   +    +S     YA  D      L    + +L   GR 
Sbjct: 452 DYLNYHCTPYSEVAGKGAKQVCFDEVPVSIA-TPYACEDADIALRLTGLLSAQLLTEGRL 510


>gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
 gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
          Length = 953

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 12/132 (9%)

Query: 10  DIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRI-------AA 58
           D+      R      +A DTET  L PR  +L  +  + G+    +  I +         
Sbjct: 353 DLVTLLEQRDSPEAIVAWDTETTDLDPRLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLP 412

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
            Q     L  +L  ++  K     +FD  +L +        VF T +AS L    +  H 
Sbjct: 413 LQTVLTALRPILESDRHPKALQNAKFDRLILRHQGIELAGVVFDTMLASYLLNP-SLGHS 471

Query: 119 LKDNLKELLGIN 130
           L       L + 
Sbjct: 472 LDALADRWLKLQ 483


>gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
 gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
          Length = 964

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 12/132 (9%)

Query: 10  DIPAECAARYVD--AIAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRI-------AA 58
           D+      R      +A DTET  L PR  +L  +  + G+    +  I +         
Sbjct: 364 DLVTLLEQRDSPEAIVAWDTETTDLDPRLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLP 423

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
            Q     L  +L  ++  K     +FD  +L +        VF T +AS L    +  H 
Sbjct: 424 LQTVLTALRPILESDRHPKALQNAKFDRLILRHQGIELAGVVFDTMLASYLLNP-SLGHS 482

Query: 119 LKDNLKELLGIN 130
           L       L + 
Sbjct: 483 LDALADRWLKLQ 494


>gi|331231583|ref|XP_003328455.1| hypothetical protein PGTG_09749 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309307445|gb|EFP84036.1| hypothetical protein PGTG_09749 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 327

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 31/172 (18%)

Query: 23  IAVDTETLGLMPRR-DR-LCIVQLSPGDGTVDIIRIAAGQK-------NAPNLVGMLVDE 73
           ++ D E +     R  R   ++Q+  G     +I++   Q+           +   L D 
Sbjct: 138 VSFDMEWVTDHRARKPRPTSLIQIC-GQTITLVIQLVHIQRPKWFLHVLPTPIAEFLRDP 196

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRP----------VFCTKIASRLTRT------YTNQH 117
              K       D   L                    +      ++L          T   
Sbjct: 197 FIVKFGVGISGDADKLARDQFTDPTGSKVYLNAFLELIDV---AKLIDPTARDDIPTEAF 253

Query: 118 GLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            L+  +   L   + K +   +S+W +  LS  QL YAASDV+    + L+ 
Sbjct: 254 SLQRFVARYLEQFLPKTKSVVTSNWESFYLSPTQLNYAASDVISAMRVYLKL 305


>gi|323452751|gb|EGB08624.1| hypothetical protein AURANDRAFT_64013 [Aureococcus anophagefferens]
          Length = 217

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 45/147 (30%)

Query: 21  DAIAVDTETLGLMPRRDRLC--IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
             IAVD E +G      +L   +VQ++   G + +  +A  +     L  +L DE   K+
Sbjct: 60  KVIAVDCEWIGEQ----KLGADVVQIAASTGPLYVFHVARMRHFPRGLKQLLADEAFAKV 115

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA-QQS 137
                                                   L +  + +L   + K   Q+
Sbjct: 116 -------------------------------------GCCLWELARVVLRRRLPKGPAQT 138

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALR 164
           S+W    L  +QL YAA DV    A+ 
Sbjct: 139 SNWKQA-LDADQLAYAALDVEVTVAIH 164


>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
          Length = 923

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   ++  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVLAKLKPWLEDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            R+K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 SRKKLGQHLKYDAQVLVNH-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L     +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLDKA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
 gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
          Length = 315

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 40/147 (27%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDII------------------ 54
           D + +D ET G  P  DR+  +Q++          D  V  +                  
Sbjct: 9   DYVVIDFETTGFNPYNDRI--IQVAAVRYRNHELADQFVSFVNPERFIPNRITSLTGITN 66

Query: 55  ----RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRPV-FCTKI 105
                    Q+  P  +  L ++    + H   FD+  L     +      + +   T  
Sbjct: 67  YRVSDAPTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNANMLRLPEPKNIVIDTVF 124

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINIS 132
            ++    +   H L+   K +LGI +S
Sbjct: 125 LAKRYMKHAPNHKLETL-KRMLGICLS 150


>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
          Length = 923

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   ++  +  S   G    + +A    + P           L   L D 
Sbjct: 349 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVLAKLKPWLEDA 408

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            R+K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 409 SRKKLGQHLKYDAQVLVNH-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 466

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L     +YAA D      L      ++ R 
Sbjct: 467 KYEDVAGKGAQQIGFDEVPLDKA-SEYAAEDADITLQLHHALYPQIARE 514


>gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
 gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
          Length = 1012

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 48/144 (33%), Gaps = 16/144 (11%)

Query: 43  QLSPGDGTVD--IIRIAAGQKNA-PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           Q   GDG     +     G ++A   L  +L      KI    +F  AVL    G+ ++ 
Sbjct: 460 QSGDGDGLFAAGLAPDQIGTRDALEALRPLLESPGVLKIGFNIKF-TAVLLAQHGLTLQN 518

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGIN-ISKAQ--QSSDWSADDLSDEQLQ----- 151
               ++ S       + HGL    +  LG   +S  +   S       L  +Q+      
Sbjct: 519 HDDVQLMSYALDAGRHAHGLDALAENWLGHKALSYGEVIGS---GKAKLGFDQVAIDRAT 575

Query: 152 -YAASDVVHLHALRLQFTEKLQRL 174
            YAA D      L      +L   
Sbjct: 576 CYAAEDADVALRLWRILKPRLTAE 599


>gi|218198982|gb|EEC81409.1| hypothetical protein OsI_24649 [Oryza sativa Indica Group]
          Length = 159

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 20/136 (14%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG------RFDIAVLF 90
            R   +QL  G     + ++A G      L   L D                R D   L 
Sbjct: 18  PRPGTLQLCVGS-RCLVFQVAQGNAFPAALRRFLADGGV-----AAFVGYGIRSDCRKLA 71

Query: 91  YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI-NISK--AQQSSDWSADDLSD 147
              G+ V    CT+    +T   ++        +ELLG+  I K  A   S W A  LS 
Sbjct: 72  AHHGLHVA---CTRELRAVTGMGSSSM--ARMAEELLGLAGIKKPAAVGRSRWDAPKLSK 126

Query: 148 EQLQYAASDVVHLHAL 163
           +Q++YA  D    H L
Sbjct: 127 KQVKYACVDAFLSHRL 142


>gi|125598889|gb|EAZ38465.1| hypothetical protein OsJ_22850 [Oryza sativa Japonica Group]
          Length = 247

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 20/136 (14%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG------RFDIAVLF 90
            R   +QL  G     + ++A G      L   L D                R D   L 
Sbjct: 106 PRPGTLQLCVGS-RCLVFQVAQGNAFPAALRRFLADGGV-----AAFVGYGIRSDCRKLA 159

Query: 91  YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI-NISK--AQQSSDWSADDLSD 147
              G+ V    CT+    +T   ++        +ELLG+  I K  A   S W A  LS 
Sbjct: 160 AHHGLHVA---CTRELRAVTGMGSSSM--ARMAEELLGLAGIKKPAAVGRSRWDAPKLSK 214

Query: 148 EQLQYAASDVVHLHAL 163
           +Q++YA  D    H L
Sbjct: 215 KQVKYACVDAFLSHRL 230


>gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames]
 gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne]
 gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
 gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           CNEVA-9066]
 gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055]
 gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger
           B]
 gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum]
 gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           Australia 94]
 gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. Ames]
 gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis
           str. Sterne]
 gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
          Length = 315

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 695

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 60/201 (29%), Gaps = 59/201 (29%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDII-----RIAA 58
           AE     +  +  DTET GLMP +D +  VQ++               D +      I  
Sbjct: 487 AEARLEDLTYVVFDTETTGLMPSQDEI--VQIAAVRIVNGRRVEAEVFDTLVNPRRPIPP 544

Query: 59  GQK-----------NAPNLVGM------LVDEKREKIFHYGRFDIAVLFYT-------FG 94
                         +AP++  +        +     + H   FD+  L          F 
Sbjct: 545 SSTEVHGITDAMVADAPDMTEVGRQFHKFAEGAVL-VAHNAPFDMEFLRRAELLIDRRFD 603

Query: 95  VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
               P+  T + S +    T  H L       LGI I +  + +              A 
Sbjct: 604 ---NPILDTVLLSAVLFGQTEVHSLDALAHR-LGITIPEEARHT--------------AI 645

Query: 155 SDVVHLHALRLQFTEKLQRLG 175
            D V      L+    LQ  G
Sbjct: 646 GDTVATADAFLKLLPMLQGRG 666


>gi|307106638|gb|EFN54883.1| hypothetical protein CHLNCDRAFT_134987 [Chlorella variabilis]
          Length = 561

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 114 TNQHGLKDNLKELLGINISKAQ--QSSDWSADD-LSDEQLQYAASDVVHLHALRLQFTE 169
             +  L   +  LL + + K+Q  + S+W     LS EQ +YAA+D      +    ++
Sbjct: 307 PQRWSLAGLVSLLLRLRLDKSQAIRCSNWEVRPPLSSEQQRYAATDAWCSLRVYEVLSK 365


>gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
 gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
          Length = 315

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 894

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 28/215 (13%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGT-VDIIRI--- 56
           VH  ++    A     + +A+DTET  L P      +V  S     GD T    + +   
Sbjct: 299 VHREELARLLATLEQTERVAIDTETSSLDPHAAE--LVGFSLAWFEGDRTRAVYVPLGHR 356

Query: 57  ----AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111
                        L   L D  + K+    +FD  + +   G+R R +   T + S +  
Sbjct: 357 EGKQIPRDVALALLGPWLEDGSKAKLAQNAKFDWQIFWAQ-GLRPRGLARDTLLESYVLD 415

Query: 112 TYTNQHGLKDNLKELLGI-NIS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
           + T  H L    +  L   NIS      K +Q+  ++A D++     YAA D      + 
Sbjct: 416 S-TAAHDLDSLAERYLQHRNISYAELTGKGRQARSFAAVDIASA-TAYAAEDAEVCLRVD 473

Query: 165 LQFTEKLQR-LGRSDLATS-CCNFLMDRAELDLLG 197
            Q   +++R  G + +        +   A ++  G
Sbjct: 474 AQMWPQIRRHEGLARVFRDIEMPLVEVLARMEWAG 508


>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
 gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
          Length = 942

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVG 68
             + I  DTET  L P   ++  +  S   GT   + +     +AP+             
Sbjct: 363 QAELICFDTETTSLDPLTAQIVGMSFSVAAGTGAYLPLTHDYFDAPSQLPLAEVLAKFKP 422

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
           +L +   +K+    ++D  VL    G+ +  +   T + S +  ++   HG+ +     L
Sbjct: 423 LLENPTIKKVGQNLKYDKHVLANH-GIALNGIAHDTLLQSYVLESH-RGHGMDELSARHL 480

Query: 128 GIN 130
           GI 
Sbjct: 481 GIE 483


>gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91]
 gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91]
          Length = 906

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 21/166 (12%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
            + +++DTET  L P    L  + L    G    I +A   +  P+          L   
Sbjct: 328 AELVSIDTETTSLNPMEAELVGLSLCTEPGHAAYIPLAHHYQGVPSQLNREQVLQRLKPW 387

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L +    K+    ++D  V     GV +  +   T + S +  ++   H L    +  L 
Sbjct: 388 LENSDIPKVGQNLKYDRHVFANH-GVMLNGIAHDTLLQSYVLESHL-SHDLDSLARRHLD 445

Query: 129 IN-IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           I  IS      K  +   +   ++    + YAA D      L    
Sbjct: 446 IQTISYDDVTGKGAKRIGFEQVEIQQAGI-YAAEDADIPLRLHHFL 490


>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
 gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
          Length = 881

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 22/114 (19%)

Query: 70  LVDEKREKIFHYGRFDIA---VLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKE 125
             D+  +KI H    DI    V+   + +  +  +F TKIAS L     + + L++ + E
Sbjct: 384 FEDKNIKKISH----DIKNVYVVLRKYDIDAKNFIFDTKIASYLLEPSKSDYILREIILE 439

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
            L INI       D      SDE+ +    +   +  +  +  ++++     +L
Sbjct: 440 KLSINID------D------SDEECK--IKETYCIKEIYEKLQKEIKEANMEEL 479


>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1]
 gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1]
          Length = 911

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 25/179 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------- 65
            + +   AVDTET  L P    L  + ++        I +      AP            
Sbjct: 328 LKGLPRFAVDTETTDLHPHSAELVGISIAWQPMVAYYIPVGHALDAAPEGQLPRADVLAA 387

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLK 124
           L  +L   +  K     ++D  +      + ++ +   + + S L       H L     
Sbjct: 388 LKPLLESPEIGKTGQNIKYDYQIFKRYH-ITMQGIERDSMLYSYLLYGANRAHNLDAIAT 446

Query: 125 ELLGIN-------ISKAQQSSDWSADDLSDEQLQ--YAASDVVHLHALRLQFTEKLQRL 174
           E LG           K ++   +    L    L   YA  D              L R 
Sbjct: 447 EELGRTTIKFEDVAGKGRKRIRFDQVPL---HLAAPYACEDAEVTWQAAASMAPNLDRE 502


>gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002]
 gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002]
          Length = 887

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 46/202 (22%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           +    + A  A       +++DTET  L     RL  +  S  +G    + +A      P
Sbjct: 294 LTAAQLDAWLAKLEAAPVVSLDTETTSLDQMEARLVGISFSVTEGEAAYLPLAHHYAGVP 353

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +  R+K+    ++D  VL    G+ +  V   T +AS +  ++
Sbjct: 354 EQLDLAATLARLKPWLENPARKKLGQNLKYDRHVLANH-GIALAGVADDTLLASYVIESH 412

Query: 114 TNQHGLKDNLKELLGINIS-------KAQQSSDWSADDLSDEQL-----------QYAAS 155
              H + D  +  LG +         K              +Q+            YAA 
Sbjct: 413 LT-HNMDDLARRHLGESTVSYEEICGKG------------AKQIGFAEVDIAVASNYAAE 459

Query: 156 DVVHLHALRLQFTEKLQRLGRS 177
           D      L      KL   GR 
Sbjct: 460 DADITLRLNRALAGKL--EGRL 479


>gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425]
 gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425]
          Length = 982

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 67/198 (33%), Gaps = 44/198 (22%)

Query: 10  DIPAECAA---------RYVDAIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRI 56
           D P + AA              +A DTET  L PR  +  +V +     P    +  + +
Sbjct: 370 DTPEKLAALVETLQTCTDPGTPVAWDTETTALSPRDAQ--LVGIGCCWGPAPDQIAYLPL 427

Query: 57  AAGQ-------KNAPNLVGMLVDEKREKIFHYGRFDIAVLF----YTFGVRVRPVFCTKI 105
              Q            L  +L D +  K F   ++D  VL     +  GV    VF T +
Sbjct: 428 GHSQGGNLDLTLALEQLRPLLEDARYPKAFQNTKYDRLVLKFQGVHLQGV----VFDTML 483

Query: 106 ASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQL-QYAASDV 157
           AS +       H L D  ++ L I        + K Q  +D     LS E +  Y   DV
Sbjct: 484 ASYVLNPEG-SHNLTDLSRKYLDITAQSYTDLVEKGQNLAD-----LSVEAIANYCGLDV 537

Query: 158 VHLHALRLQFTEKLQRLG 175
                L  +    L    
Sbjct: 538 YATFQLVPKLRADLLDAN 555


>gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
 gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
          Length = 957

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 36/203 (17%)

Query: 23  IAVDTETLGLMPRRDRLCIV-----------QLSPGDGTVDIIRIAAGQKNAP------N 65
           I +D ET GL P RD +  V           Q  PG      +    G            
Sbjct: 377 ICIDLETTGLDPLRDEI--VGWAIAWAAQHGQ--PGRAVYLPVLGPPGSVLLDGTAVVQT 432

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           L  +L + + + I    +FD+  +    G+R   +   T +   L       H L+   +
Sbjct: 433 LKPILENPQCQLINQNVKFDLLAM-RKVGIRPATIGLDTMVGDYLLDAGARSHNLEVLGQ 491

Query: 125 ELLG---INISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLG 175
           + L    I IS    S     +  +  Q+      +YA  D   +  +      +LQ  G
Sbjct: 492 KYLSAATIPISDLLGS---GKNQKTMNQIEIERVAEYATEDAELVVRMAPIIESQLQEAG 548

Query: 176 RSDLATS-CCNFLMDRAELDLLG 197
              L        +   A+++  G
Sbjct: 549 LWKLYDEVEKPLIPVLADMEFKG 571


>gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 656

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 36/185 (19%)

Query: 17  ARYVDAIAVDTETLGLMPRR--DRLCI---------VQLSPGDGTVDIIRIA-------- 57
              V  +A D ET      R   +  +         V  S  +G    + +A        
Sbjct: 17  LAGVSPVAFDFETAPDNEYRKEPKAALDAHKAHITGVSFSVTEGDAIYVPLAHRVGVNCE 76

Query: 58  AGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT------ 110
                   L   +        I H   F+   L+    V   P + T  A++LT      
Sbjct: 77  DPDALWAFLKESIFESHDVICIAHNLSFEAMFLYKQGIVVQEPCYDTIAAAQLTMKSKWE 136

Query: 111 -RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSD------EQLQYAASDVVHLHAL 163
            R   +  GLK     L G ++      +D       +      E ++YA +D  +   L
Sbjct: 137 FRGLHDS-GLKLLATSLFGADMPSFSSVTD--GRHFDEMNPQEYETVRYACADSDYTLCL 193

Query: 164 RLQFT 168
             +F 
Sbjct: 194 YYKFN 198


>gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
 gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
          Length = 318

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      I H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHTNVI-IAHNASFDMRFLKSNVSMLGLPEPQNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|224011024|ref|XP_002294469.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969964|gb|EED88303.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 771

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 42/173 (24%)

Query: 18  RYVDAIAVDTE--TLGLMPRRDRLCIVQLS---PGDGTVDIIRIAAGQKN---------- 62
           +    +A D+E  T   +     L  +Q S    G     ++ +  G+ +          
Sbjct: 587 QLEKMVAFDSEWCTHDGVT---ELATIQFSVFEDGVPNAWVVDLLGGRVDDGSIHDPSYS 643

Query: 63  ---APNLVGML--VDEKREKIFHYGRFDIAVLFYTFG----VRVRPVFCTK-IAS-RLTR 111
                 L  +    D       H  R D+ +L    G    V     +  + IA+ R+T 
Sbjct: 644 NVACDVLRWLFLESDAHIVGFAH--RHDLHMLSTYIGEEISVSCPRYWDLQLIAANRMTE 701

Query: 112 TYTNQH----GLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYA 153
               +     GLK                 +SK +Q S+W+   L   QL+YA
Sbjct: 702 DTGQEVSSLPGLKSCCSFFFNNQKDSNSWSLSKEEQCSNWNERPLRPSQLEYA 754


>gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1]
 gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1]
          Length = 925

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 21  DAIAVDTETLGLMPR------------------RDRLCIVQLSPGDGTVDIIRIAAGQKN 62
             + +D ET+   P                   + ++  + LS   G    I +   +  
Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266

Query: 63  AP---------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRT 112
            P          L  +L  E  E I H G+FDI  L  +  + +   ++ T +   L  T
Sbjct: 267 MPGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDTLIWDTMLIHYLCIT 326

Query: 113 YTNQ-HGLKDN 122
                HGLKD 
Sbjct: 327 EEKGTHGLKDL 337


>gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198]
 gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198]
          Length = 904

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 89/254 (35%), Gaps = 65/254 (25%)

Query: 4   IRVHEGDIPAECAARYVDA-IAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRIA 57
           +   E ++ A   +   DA IA D ET GL   + RL     C      G      + I+
Sbjct: 321 LITEERELFALLDSIPSDALIAYDCETNGLDALQARLVGFSFC----FDG-IHGYYVPIS 375

Query: 58  AG------QKNAPNLVGMLVDEKREKIF------HYGRFDIAVLFYTFGVRVRP-VFCTK 104
                   Q +  +          EKIF      H  +FD+ +    F +  +  +  + 
Sbjct: 376 HDYLGVGKQVDTKDAKR-----AIEKIFSHPIVGHNLKFDLMIAKANFNLTPKREIQDSM 430

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDV 157
           + + L  +  +  GL   +++  G  +        K +   D    DL     +YA+ D 
Sbjct: 431 LLAYLLDS-ASMMGLDILMEKFFGKKMIAYDEVVKKGKTFGD---VDLERA-SEYASEDA 485

Query: 158 VHLHALRLQFTEKLQR---LGRSDLATS-CCNFLMDRAELDLLG------W--------- 198
           V    L+ +  E+LQ        +LA      F+   A+++  G      W         
Sbjct: 486 VACFCLQERLKEELQAKRCAHLLELAKDLEYPFIEVLADMEYQGIKIDVEWFEALKESLS 545

Query: 199 -----ENVDIFSHS 207
                +  +IF+H+
Sbjct: 546 EALSQKEEEIFAHA 559


>gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L]
 gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
          Length = 315

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            ++ + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLNYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 64

Query: 61  -----KNAPNLVGML------VDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP +  +L      +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPVFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 1435

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAGQ-------- 60
           P E A +    +  D ET GL    D++  ++L+     +G V I    A          
Sbjct: 410 PKEIALKEATYVVFDVETTGLSSVYDKI--IELAAVKMKEGQV-IDTFEAFINPNQPLSS 466

Query: 61  -------------KNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---FYTFGVR--V 97
                        ++AP    +L D     +    + H   FDI  L   +   G+    
Sbjct: 467 FTTELTGITNAMVEDAPQEDVVLKDFYDFSQNTILVAHNASFDIGFLNKGYERIGIENTP 526

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
            PV  T   SR+   +   H L    K   G+N+ +  ++
Sbjct: 527 LPVIDTLELSRMVNPHLKSHRLNTLAKRY-GVNLEQHHRA 565


>gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 695

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 58/197 (29%), Gaps = 51/197 (25%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDII-----RIAA 58
           AE     +  +  DTET GLMP +D +  VQ++              +D +      I  
Sbjct: 487 AEARLEDLTYVVFDTETTGLMPSQDEI--VQIAAVRIVNGRRVEAEVLDTLVNPHRPIPP 544

Query: 59  GQKNAPNLVGML--VDEKR--------------EKIFHYGRFDIAVLFYT---FGVRV-R 98
                  +   +                       + H   FD+  L       G R   
Sbjct: 545 SSTEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGRRFDN 604

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
           P+  T + S +    ++ H L      + GI I +  + +              A  D V
Sbjct: 605 PILDTVLLSAVLFGQSDVHSLDALTHRI-GITIPEEARHT--------------AIGDTV 649

Query: 159 HLHALRLQFTEKLQRLG 175
                 L+    LQ  G
Sbjct: 650 ATADAFLKLLPMLQGRG 666


>gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 711

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 52  DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIAS 107
            I +  AG    P     + D     + H   FD+  L       GVR   PV  T I S
Sbjct: 580 VIDKPPAGVV-LPQFRSYVADA--VLVAHNAAFDLKFLRMREKEMGVRFDSPVLDTMILS 636

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQS 137
                    H L D  +   GI I+    +
Sbjct: 637 NFLDGPEAGHSLDDICERY-GIEITDRHTA 665


>gi|171689072|ref|XP_001909476.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944498|emb|CAP70609.1| unnamed protein product [Podospora anserina S mat+]
          Length = 328

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 62/181 (34%), Gaps = 30/181 (16%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQ-LSPGDGTVDIIRI----------AAGQKNAPNLV 67
              +I VD E   L      L ++  L P D  V II +           + + +   L 
Sbjct: 30  PSSSIYVDLEGTNLGRG-GTLDLITVLVPPDRKVRIIDVKAMGNQAFTTPSKKDDNVTLK 88

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--GLKDNLK- 124
            +L D    K     R D   L   + V +  V   ++   LTR   + +  GL   ++ 
Sbjct: 89  SILEDPSIRKYLWDVRNDADALKSLYHVAISGVIDLQLLENLTRQGNSFYVTGLDKAVEN 148

Query: 125 ------------ELLGINISKAQQSSD---WSADDLSDEQLQYAASDVVHLHALRLQFTE 169
                       +    +I K   S D   +S    +   L+Y A DV  L  LR  +  
Sbjct: 149 DLRLDQQEQIEWKKTKEDIRKRMASGDSGIFSTRPFTTPVLRYCAGDVQFLPLLRKAYEA 208

Query: 170 K 170
           +
Sbjct: 209 R 209


>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
 gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
          Length = 941

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 26/167 (15%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN---------------APNLVG 68
           A+DTET  L P   +L  + LS   G    I +     +                  +  
Sbjct: 362 AIDTETTSLDPMLAQLVGISLSVEPGEACYIPVGHRGPDVAGMENNGQLSRDTVLARMRA 421

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELL 127
            L D+ + K+    ++DI V     GV +  V   T + S +  ++ N HG+    + LL
Sbjct: 422 WLEDDSKPKLGQNIKYDIHVFANH-GVTLCGVAQDTMLESYVLASHRN-HGMDSLAERLL 479

Query: 128 GINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +          K      +   DL+    +YAA D      L  + 
Sbjct: 480 NLKTITYEEVCGKGASQIGFDQIDLARA-TEYAAEDADVTLRLHRKM 525


>gi|435164|emb|CAA53760.1| DNA polymerase I [Rhizobium leguminosarum]
          Length = 158

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 13/146 (8%)

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
              P L  +L DE   K+    ++D  +L   +G+  R    T + S +      +HG+ 
Sbjct: 10  DALPRLKALLEDESVLKVAQNLKYD-YLLLKRYGIETRSFDDTMLISYVLEPAPARHGMD 68

Query: 121 DNLKELLGINIS--KAQQSSDWSADDLS------DEQLQYAASDVVHLHALRLQFTEKLQ 172
              ++ LG      K    S     +++      D    YAA D      L L       
Sbjct: 69  PLSEKFLGHTPIPYKDVAGS--GKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPGCA 126

Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197
           R G + +        L   A ++  G
Sbjct: 127 R-GLTSVYERLERPLLPVLARMEARG 151


>gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 303

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            ++ + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 10  PLNYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGI 67

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    + +    + H   FD+  L     +     P   V  T 
Sbjct: 68  TNYRVSDAPTIEEVLPLFLAFLHKNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 126

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 127 FLAKKYMKHAPNHKLETL-KRMLGIRLS 153


>gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
 gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
          Length = 315

 Score = 47.3 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRI------ 56
            +D + +D ET G  P  D++  +Q++         VD              RI      
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGI 64

Query: 57  -------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                  A   +    L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDARTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLSLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   H L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNHKLETL-KRMLGIRLS 150


>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 917

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 23/163 (14%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A+DTET  L P + +L  + L    G    I +A   ++ P           L   L D+
Sbjct: 343 AIDTETTSLEPMQAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVLEKLRSWLEDD 402

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            + K+    ++D  +           V  T + S +  ++   H +       L     K
Sbjct: 403 SKPKVGQNLKYDSHIFANHGVTLRGIVHDTLLQSYVFESH-RSHDMDSLALRHLNR---K 458

Query: 134 AQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQF 167
                D     A  L  +Q+      +YAA D      L  + 
Sbjct: 459 TMTFQDVCGKGASQLCFDQVDIARATEYAAEDADITLQLHQRM 501


>gi|159470993|ref|XP_001693641.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283144|gb|EDP08895.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 277

 Score = 46.9 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 26/177 (14%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML 70
           +  + AA     + +D E     P        Q   G   V ++         P L  +L
Sbjct: 113 LVGQLAAAAPAVVGLDME---WKP--------QYVAGRHCVCLLLHVLHSGIPPRLRHLL 161

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--CTKIAS-RLTR---------TYTNQHG 118
             E+  K+      D + L    GV +R +     ++A+ R+ +          Y ++  
Sbjct: 162 EAEQPVKVGVNISGDASKLRRDCGVEMRGLLELD-EVANDRVLQVIENITVNTEYRSRWS 220

Query: 119 LKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           L   ++  L  ++ K    +  +W    L   Q +YAA D     A+      + +R
Sbjct: 221 LSALVETALRCHLPKPNNIRCGNWERKPLDGAQRRYAALDAYAGLAVWAALLLRSRR 277


>gi|330914249|ref|XP_003296559.1| hypothetical protein PTT_06691 [Pyrenophora teres f. teres 0-1]
 gi|311331249|gb|EFQ95359.1| hypothetical protein PTT_06691 [Pyrenophora teres f. teres 0-1]
          Length = 544

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 63/154 (40%), Gaps = 24/154 (15%)

Query: 36  RDRLCIVQLSPGD--GTVDI-IRIAAGQKN--APNLVGMLVDEKREKIFHYGRFDI---- 86
           + +  ++Q++  D  G   I I      ++  AP+L  ++ D + EK+      DI    
Sbjct: 85  QQKAGLIQIATQDKVGLFHIGIHPGKTSEDIIAPSLKRLIEDPRIEKV----GVDIWNGN 140

Query: 87  -AVLFYTFGVRVR-PVFCTKIASRLTRTYTNQ--------HGLKDNLKELLGINISKAQQ 136
            + L   FG+  +  + C+ +  RL +   ++          L D +++   + + +   
Sbjct: 141 FSRLSRWFGLNPKGAIECSHL-YRLVKFGRSKPELVTTRLVSLADQVQDQFRLVLDEEIS 199

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            + +    L  ++  +AA +   +  +  +  +K
Sbjct: 200 QASFLGRTLKRKEKNHAARNAYAVSQVYRRLLKK 233


>gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 719

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 51/197 (25%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRD---------RL---CIVQ-------------LSPG 47
           AE A   +  +  DTET GL P R          RL    ++Q             +   
Sbjct: 515 AERALDQLSCVVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKPCRAIPDS 574

Query: 48  DGTVDII---RIAAGQKNAPNLVGM--LVDEKREKIFHYGRFDIAVLFYT---FGV-RVR 98
                 I    +A   +  P L      + E+   + H   FD+  L       G+   +
Sbjct: 575 ATRFHGISNEDVARAPEIGPVLRAFSRFIGEESVLVAHNAAFDMGFLRRAQARAGLAFPQ 634

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
           PV  T + S     ++  H L+  + E LG+ + K                   A +D  
Sbjct: 635 PVLDTLLLSVYLHDHSPDHTLEG-VAERLGVEVQKRHS----------------ALADAR 677

Query: 159 HLHALRLQFTEKLQRLG 175
               +  +    L+  G
Sbjct: 678 VTADVFARMIPLLRERG 694


>gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 727

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 11/127 (8%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +  +E   KI H  ++D  VL    G+ +R      + S +  +    H + + 
Sbjct: 198 LSYLKKIFENEHLLKIGHNIKYDKLVLQRY-GIIIRGFEDIMLMSYVLDSGRYSHDIANI 256

Query: 123 LKELLGINI--SKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRL 174
            K+ L  ++   K    +      +S +Q+      +Y       +  L L    KL   
Sbjct: 257 AKKWLFYDLITRKEMLKT--GKRSISIDQISNSRIQEYVVEKSNVILQLWLLLRAKLIAE 314

Query: 175 GRSDLAT 181
               +  
Sbjct: 315 KLLHVYE 321


>gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
 gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
          Length = 907

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 14/129 (10%)

Query: 13  AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65
            E  AR       A DTET  L      +  +  +   G    + +A      P      
Sbjct: 319 DEWLARLSAAPLFAFDTETTSLNYMEAEIVGLSFAVERGEAAYVPLAHSYPGTPAQLDRD 378

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119
                L  +L D  + K+    ++D +VL     + ++ + F T + S +  +   +H +
Sbjct: 379 AVLAALKPLLEDPDKAKLGQNLKYDASVLARY-DIAMQGIAFDTMLESYVLDSTGTRHDM 437

Query: 120 KDNLKELLG 128
                + LG
Sbjct: 438 DSLALKYLG 446


>gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855]
 gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855]
          Length = 926

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 16/187 (8%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-----APNLVGMLVDEKREKI 78
           A D E     P    L  +  S        +                L  +L     EK+
Sbjct: 358 AFDAEATSRDPMTADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGPVLA-RDTEKL 416

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI------NIS 132
            H  ++D+ +L          +F T +A  L       H L D  + +L        ++ 
Sbjct: 417 GHNLKYDLLLLKQHGVEVGGTLFDTMVAHYLVAPE-ENHNLDDVARSVLNYKMVPIADLI 475

Query: 133 KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDR 190
             +   D S  ++  E    YA  D    + L  +   +L+     D+A       +   
Sbjct: 476 GDETDRD-SMREVEVETAAPYACEDADISYRLADELEAQLEDGNVLDVAHDIEFPLVHVL 534

Query: 191 AELDLLG 197
           A ++  G
Sbjct: 535 ATMEHTG 541


>gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4]
 gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4]
          Length = 912

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 16/142 (11%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPV- 100
           + G+G   +   A  + +   L   L D +  KI H    D+ V  +     G     + 
Sbjct: 368 ADGEG-AYVDVTAMDEADDRALSAWLADPEIRKIGH----DLKVPLHAVRARGWTFGGLN 422

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYA 153
             T +A+ L R      GL D     L   +              D  AD+L  +++   
Sbjct: 423 MDTALAAYLARPGQRTFGLDDLALRYLHRELRSEAGDGDGQLSLLDGGADELEQKEISAE 482

Query: 154 ASDVVHLHALRLQFTEKLQRLG 175
                 +  L      +L+ LG
Sbjct: 483 LVKARAIFELAGALAAELEELG 504


>gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
 gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
          Length = 988

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 59/187 (31%), Gaps = 33/187 (17%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRL-CI---VQLSPG---------DGTVDIIRIAAGQKN 62
                    +DTET  +  R+  L  +   VQ             +G   I +       
Sbjct: 387 LLASAPHFVIDTETTSVYWRQAELVGLSFAVQAHEAYYIPLTHALEGDELIAKQLDRDTV 446

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVR------VRPV-FCTKIASRLTRTYT 114
              L  +L +    KI  + ++D  +L  Y   +              T +AS +     
Sbjct: 447 LARLKPILENPNIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAAI 506

Query: 115 NQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRL 165
            +HG+ D  +  L           D     A  +S +Q+       YA  D    + L  
Sbjct: 507 TRHGMDDLARHYLQTQ---TISFEDVAGKGAKQVSFDQVAIDIASDYACEDADITYQLFD 563

Query: 166 QFTEKLQ 172
            F++KL 
Sbjct: 564 LFSKKLA 570


>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
 gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
          Length = 921

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 42/218 (19%)

Query: 7   HEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           +E +I   CA     + +A+DTET      + +L  +  S   G    I ++        
Sbjct: 334 NEDEIRDFCAQLLTFEKVALDTETTDKEAIKAKLVGMSFSTAPGRAWYIPVSRETDTVKA 393

Query: 66  LVGML----VDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLK 120
            + +L           +    ++D+ VL  ++GV+ +  +F T     +   Y  Q  L 
Sbjct: 394 RLELLRPFWEKADVLIVGQNLKYDLTVL-ASYGVKPKGRLFDT-----MLSHYVVQPELA 447

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQL--------------------QYAASDVVHL 160
            N+  L  + ++            +  EQL                    +YA  D    
Sbjct: 448 HNMDYLASVYLN---------YRPIPIEQLIGPKGRGQRNMGDLDPKDVFEYACEDADVT 498

Query: 161 HALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
             L     + ++  G   +        +   A ++  G
Sbjct: 499 LRLMAPLEKAMRENGVEQIFYDIEMPLMPVLARMERNG 536


>gi|159475214|ref|XP_001695718.1| hypothetical protein CHLREDRAFT_175235 [Chlamydomonas reinhardtii]
 gi|158275729|gb|EDP01505.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 299

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           K+ H G  D+  L   F + +  VF T+ A+ +     +   L   LK  
Sbjct: 102 KVLHGGGNDVTWLQRDFRLYLVNVFDTEKAAAVLAY--DSRALAALLKRH 149


>gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 911

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 23/163 (14%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A+DTET  L P + +L  + L    G    I +A   ++ P           L   L D+
Sbjct: 337 AIDTETTSLEPMQAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVLEKLRSWLEDD 396

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            + K+    ++D  +           V  T + S +  ++   H +       L     K
Sbjct: 397 SKPKVGQNLKYDSHIFANHGVTLRGIVHDTLLQSYVFESH-RSHDMDSLALRHLNR---K 452

Query: 134 AQQSSDW---SADDLSDEQL------QYAASDVVHLHALRLQF 167
                D     A  L  +Q+      +YAA D      L  + 
Sbjct: 453 TMTFQDVCGKGASQLCFDQVDIARATEYAAEDADITLQLHQRM 495


>gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
 gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
          Length = 879

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 41/222 (18%)

Query: 2   TTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIR 55
            T+ + E  +  +  +      IA DTET GL  R  ++     C+      +     + 
Sbjct: 297 ATLILDENTLFDKLESLESESIIAFDTETTGLNAREAKIVGFSFCV-----SENEAFYVP 351

Query: 56  IAAGQKNAPNLVGMLVDEKRE-------KIFHYGRFDIAVLFYTFGVRVRPVF-CTKIAS 107
           +       P+ + M   ++          I H  ++D A++   F +     +  T I +
Sbjct: 352 LNHTYLAVPSQISMQAAKRALGQIYSHFIIGHNLKYDFAIIENNFKLTPPKKYADTMILA 411

Query: 108 RLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDV--- 157
            L    + +  + D    L           + K +   ++++ +L      YAA D    
Sbjct: 412 WL-YNPSLRVNMDDLALRLFDYKTLHFESVVKKGE---NFASVELEKA-CNYAAEDAYIT 466

Query: 158 --VHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
              +L+ L+      L +LG      S  NF+    +++  G
Sbjct: 467 LRFYLYFLKN-LEPNLLKLG----FESEFNFIEVLRKMEQNG 503


>gi|308462810|ref|XP_003093685.1| hypothetical protein CRE_23111 [Caenorhabditis remanei]
 gi|308249485|gb|EFO93437.1| hypothetical protein CRE_23111 [Caenorhabditis remanei]
          Length = 324

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  L+    ++  + ISK++  S+W    L D+Q+QYAA D + LH +
Sbjct: 225 PRLSLQAAADQI-RVPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNI 272


>gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301]
 gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301]
          Length = 928

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 19/179 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +    +  DTET  L P   ++  +  S   G+   + +     +AP           +
Sbjct: 347 LQTAKLMCFDTETTSLDPMTAKIVGMSFSVEAGSAAYLPLKHDYFDAPEQLDFVETLAKI 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L +   +K+    ++D  VL    G+ +  +   T + S +  ++   HG+    + 
Sbjct: 407 KPILENAAIKKVGQNFKYDQHVLANH-GIALNGIAHDTMLESYVFESH-KTHGMDALAER 464

Query: 126 LLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178
            LGI     ++ +   A  ++  Q+      +YAA D      L      ++    + D
Sbjct: 465 HLGIQTISFEEVAGKGAKQVTFNQVTVEVASEYAAEDADITLQLHQAMYPQISTDAKLD 523


>gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 906

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 23/78 (29%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                 +++       L D  R K+ H  +  + V              T +A+ L +  
Sbjct: 376 DPTEVDEEDERAFAAWLADPARPKVLHNAKGAMRVFAEHGWTIEGVTMDTALAAYLVKPG 435

Query: 114 TNQHGLKDNLKELLGINI 131
                L     E LG  +
Sbjct: 436 RRSFDLDALTLEYLGREL 453


>gi|302683492|ref|XP_003031427.1| hypothetical protein SCHCODRAFT_109934 [Schizophyllum commune H4-8]
 gi|300105119|gb|EFI96524.1| hypothetical protein SCHCODRAFT_109934 [Schizophyllum commune H4-8]
          Length = 319

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 40/194 (20%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
            R     A+D E   L     +L ++      D T  +  +A       +L+ +L D   
Sbjct: 16  LRRSGIFALDMEGRDLGAANGKLSVISFRTLDDVTYLVDALAFTADQLQSLLSLLADSSV 75

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA---------------SRLTRTY------- 113
            K+   GR D + L + +GV++R     +IA                RL+R Y       
Sbjct: 76  TKLVWDGRMDASELLHGYGVQLRGAVDLQIADIMARRKRESFFDQKRRLSRGYRGIPASL 135

Query: 114 ------TNQH---GLKDNLKEL------LGINISKAQQS--SDWSADDLSDEQLQYAASD 156
                  + H   GL+   ++       +G+   +  +   S W    L+ EQ+ YA  D
Sbjct: 136 ITEAEFADVHRLNGLRGAAEDYGVIQRPMGLRGPQGPKFDHSKWLQRPLTAEQVVYATED 195

Query: 157 VVHLHALRLQFTEK 170
           V  + AL   F  +
Sbjct: 196 VDMILALYRIFKGR 209


>gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 463

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 63/211 (29%), Gaps = 51/211 (24%)

Query: 13  AECAARYVDAIAV-DTETLGLMPRRDRLC-----------------IV--QLSPGDGTVD 52
           A   A +   +AV D E+ G    RDR+                  +V  Q        D
Sbjct: 11  AAAFAGFGRPVAVVDLESTGGNFYRDRITEVAVLRFERGAAKRYEWLVNPQQPIPKFVAD 70

Query: 53  IIRIAAGQKN-APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF---GV-RVRPVFC 102
           +  I     + AP    +  D          + H  RFD   L + F   G+    P  C
Sbjct: 71  LTGITDEAVSGAPVFSDIAADLLPLLHGAVVVAHNSRFDYTFLRHEFRRAGMDFAAPALC 130

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   SR       +H L   ++   GI +    +                A +DV    A
Sbjct: 131 TVQLSRRLYPQFYRHNLDSIIERF-GIAVESRHR----------------AMADV---AA 170

Query: 163 LRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
           L       L   G  +     C  LM+   L
Sbjct: 171 LSDFLERSLVEKGAEEW-ERHCRSLMNPKML 200


>gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
 gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
          Length = 901

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 44  LSPGDGTVDIIRIAA-GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-- 100
           ++ G G+   + +      +   L   L D  R K+ H G      +++    R   +  
Sbjct: 358 IADGPGSAVALDLTDLSAADDTALSDWLSDPTRAKVVHGG----KSVWHELASRGYSLEG 413

Query: 101 --FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLS 146
             F T++A+ L       + L D  +  L   ++    SSD  A DLS
Sbjct: 414 VVFDTELAAYLCFPDQRSYDLGDLAERHLHRELTPVDTSSDQGALDLS 461


>gi|224117124|ref|XP_002317483.1| predicted protein [Populus trichocarpa]
 gi|222860548|gb|EEE98095.1| predicted protein [Populus trichocarpa]
          Length = 199

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 23  IAVDTE-TLGLMPR-RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           I +DTE  L   P    ++ I+QL  G     I ++        +L+  L +EK   +  
Sbjct: 46  IGLDTEWFLPAYPGDYQKIAILQLCVG-RRCLIFQLCHADYFPRSLIDFLGNEKYTFVGK 104

Query: 81  YGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTYTN--QHGLKDNLKELLGINISK--AQ 135
             R D   L   +G+ V         A+       +  + GLK  +   L   + K    
Sbjct: 105 EVRNDAHKLMNDYGLNVGHCRDVAYWAASKHGGDEDFRKFGLKRLVLRFLKKELEKPLKI 164

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
             S W    L  +Q++YA  D      L    ++
Sbjct: 165 TLSRWDRKKLDYQQIKYACLDAFVSFKLGELLSK 198


>gi|222618988|gb|EEE55120.1| hypothetical protein OsJ_02898 [Oryza sativa Japonica Group]
          Length = 174

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 30  LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL 89
           L   P    + ++QL   D    I ++        +L   L       +      D   L
Sbjct: 35  LRENP----VGLLQLCV-DRRCLIFQLLYADYVPGSLRRFLAGAADCFVGVGVDKDAERL 89

Query: 90  FYTFGVRVRPVFCTK-IAS-RLTRTYTNQHGLKDNLKELLGINISKAQQ--SSDWSADDL 145
               G+ V      + +A+ RL R   +Q GL+  ++ ++G ++ K Q+   S W A  L
Sbjct: 90  SDDHGLTVANTADLRPLAAQRLGRPELSQAGLQAVVRAVMGADLVKPQRVTMSRWDASCL 149

Query: 146 SDEQLQYAASDVVHLHALRLQFTE 169
           S+EQ++YA  D      +  +   
Sbjct: 150 SNEQIRYACIDAYVSFEVGRRLLR 173


>gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803]
 gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I
 gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803]
          Length = 986

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 29/173 (16%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPGDG--TVDIIRIAAGQKNA-------PNLVGMLVD 72
            +A DTET  L P    L  +  + G     V  I +   Q            L  +L +
Sbjct: 397 PVAWDTETDSLDPLVANLVGIGCAWGQEPNQVAYIPLKHHQGEQLSLGIIKDLLGEILGN 456

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL-LG--- 128
               K+    +FD  VL +        V  T +AS + +     H L D  +   LG   
Sbjct: 457 AIYPKVLQNAKFDRRVLAHHGIELGGVVLDTMLASYVLQPE-ETHNLTDLCRRYNLGLVA 515

Query: 129 -----INISKAQQSSDWSADDL-SDEQLQYAASD--VVHLHALRLQFTEKLQR 173
                + + K Q  +D     L +  Q  Y   D    +L  L  +  ++L +
Sbjct: 516 LSYKDLGLKKDQTIAD---LPLETAGQ--YCGLDCYATYL--LASKLQKELDQ 561


>gi|224089887|ref|XP_002308852.1| predicted protein [Populus trichocarpa]
 gi|222854828|gb|EEE92375.1| predicted protein [Populus trichocarpa]
          Length = 215

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 18/175 (10%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDR-----LCIVQLSPGDGTVDIIRIAAG 59
           ++H+ + PA+        + +D E     P R R     +  +QLS G     I ++   
Sbjct: 48  KLHQNNNPADHPL----LVGLDIE---WRPNRTRQIENPVATLQLSTGKD-CLIFQLLHC 99

Query: 60  QKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI--ASRLTRTYTNQ 116
               P +L   L ++    +      D+  L   + V +      ++  A +L       
Sbjct: 100 PTGIPQSLYDFLSNKNYTFVGVGIEGDVEKLVEGYDVSMGNAVDLRVLAAEKLGAEQWKN 159

Query: 117 HGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            G+K  +KE+LG  I K      S W  + L+ +Q+QYA  D    + +      
Sbjct: 160 SGIKSLVKEILGKQIEKPKRVTMSRWDNEWLTGDQVQYACLDAFLCYKIGENLYA 214


>gi|170588753|ref|XP_001899138.1| 3'-5' exonuclease family protein [Brugia malayi]
 gi|158593351|gb|EDP31946.1| 3'-5' exonuclease family protein [Brugia malayi]
          Length = 573

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 17/166 (10%)

Query: 39  LCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           L +V L+     V    + +        +  +L  EK  K+ H  +    +L + + + +
Sbjct: 340 LSLVVLATTMQIVVFDVVHSDTILLESGVKEILESEKIIKVIHDAKRVATLLAHRYAINL 399

Query: 98  RPVFCTKIASRLTRTY--------TNQHGLKDNLKELL-------GINISKAQQSSDWSA 142
           R +F T++A  + +                 +  +           +   K      W  
Sbjct: 400 RKIFDTQVAHAILQYEKFGKAVSDMRTMSFVNLRRVYYPQSIMMSDVTPRKLTHLPSWGL 459

Query: 143 DDLSDEQLQYAASDVVHLHA-LRLQFTEKLQRLGRSDLATSCCNFL 187
             ++++ L     +   L   L    +  L +   +     C   L
Sbjct: 460 RPITEDFLVTVVEEAHCLVTVLYRMISAMLPKHLLALFEEKCLKAL 505


>gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii]
 gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii]
          Length = 881

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 30/168 (17%)

Query: 48  DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGV-RVRPVFCT 103
           DG+   ++    +     LV  L D  + K       D+  L    +  G+    P F T
Sbjct: 341 DGSAAFVQ-GEARDWPQPLVECLRDGSKLK----AVQDLKPLLLALHRQGIDMPGPYFDT 395

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV------ 157
            +A  L       H L+    +LL   +   +   D S    S         DV      
Sbjct: 396 MVADYLLNPNRRAHTLEAIAMDLLSYQLGAGE-REDTSKGPQS-------LFDVDEALVR 447

Query: 158 ------VHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGW 198
                      +     E+L+  G   L        +   AE++  G+
Sbjct: 448 RTGEAAAVTAKVAPMLRERLKEQGSLSLFQDVEMPLVPVLAEIERNGF 495


>gi|308474798|ref|XP_003099619.1| hypothetical protein CRE_22979 [Caenorhabditis remanei]
 gi|308266474|gb|EFP10427.1| hypothetical protein CRE_22979 [Caenorhabditis remanei]
          Length = 398

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            L   LK ++G  ISK++  S W+  +L  +Q+ YAA D + LH +
Sbjct: 226 SLVKMLKRVVGKEISKSETMSCWTVPELRHDQIHYAAMDAIALHYI 271


>gi|290987710|ref|XP_002676565.1| predicted protein [Naegleria gruberi]
 gi|284090168|gb|EFC43821.1| predicted protein [Naegleria gruberi]
          Length = 740

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 16/149 (10%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA----VLFYTFGVR 96
           ++QLS G   +         K +   V ++ D++  K +     D+      + +   + 
Sbjct: 586 LIQLSTGKSCLLYGTSEGKAKPSNLFVELMYDKRVIKTWCSMHEDVKLISLWIKHYNMIL 645

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAA 154
               F       L     +Q G     ++LL + ++K    Q S WS   LS  Q +Y+A
Sbjct: 646 ENREF-----EGLIELDPSQLGASTLCEQLLSLKMAKERTVQVSRWSRFGLSKIQTKYSA 700

Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSC 183
            D  +L          +    + DL    
Sbjct: 701 QD-SYL----NYLLYNIVSENKEDLTQVE 724


>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
 gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
          Length = 916

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 24/201 (11%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  + +A DTET  L      L  +  S   G    + +A   + AP           L 
Sbjct: 336 QAAELVAFDTETTSLNYMAAELVGLSFSVEAGEAAYVPVAHDYEGAPEQLDRDWVLEQLK 395

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
             L D+ + K+  + ++D  VL   + + +R + + T + S +  + +++H +     + 
Sbjct: 396 PWLEDDSKAKVGQHLKYDANVL-NNYQITLRGIAYDTMLESYVYNSVSSRHDMNTLASKF 454

Query: 127 LGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           LG      +  +   A   +  Q+       YAA D      L      K++     +L 
Sbjct: 455 LGHTCVSFEDIAGKGAKQKTFNQIDLEVAAFYAAEDADITLRLHQAIWPKIETT--PELV 512

Query: 181 ----TSCCNFLMDRAELDLLG 197
                  C  +   A+++  G
Sbjct: 513 SIFKDIECPLIPVLAKMEQTG 533


>gi|308460450|ref|XP_003092529.1| hypothetical protein CRE_25898 [Caenorhabditis remanei]
 gi|308253105|gb|EFO97057.1| hypothetical protein CRE_25898 [Caenorhabditis remanei]
          Length = 418

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 39/168 (23%)

Query: 22  AIAVDTETL-GLMPRRDRLCIVQLSPGDG-TVDIIRIAAGQKNAPNLVGMLVDEKREKI- 78
            + +DTE     +    +L ++ L   D  TV + R+     +      +   ++  KI 
Sbjct: 145 PLYLDTEGSYSELLNGSKLALITLFDVDSRTVYLFRVHRMSYD-----QLQTIQRELKIV 199

Query: 79  --------FHYGRFD-IAVLFYTFGVRVRPVFCTKIASRLTRTYTN-------------- 115
                    H   +D +  +     +            R+                    
Sbjct: 200 AYITQELSLHRMSYDQLQTIQRELKIVANN-------RRIVSFGPETTIKCPTSNIQRHP 252

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           +  L+    ++  + ISK++  S+W    L D+Q+QYAA D + LH +
Sbjct: 253 RLSLQAAADQI-RVPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNI 299


>gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8]
 gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8]
          Length = 949

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 16/187 (8%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-----APNLVGMLVDEKREKI 78
           A D E     P    L  +  S        +                L  +L     EK+
Sbjct: 381 AFDAEATSRDPMTADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGPVLA-RDTEKL 439

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI------NIS 132
            H  ++D+ +L          +F T +A  L       H L D  + +L        ++ 
Sbjct: 440 GHNLKYDLLLLKQHGVEVGGTLFDTMVAHYLVAPE-ENHNLDDVARSVLNYKMVPIADLI 498

Query: 133 KAQQSSDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDR 190
             +   D S  ++  E    YA  D    + L  +   +L+     D+A       +   
Sbjct: 499 GDETDRD-SMREVDVETAAPYACEDADISYRLADELEAQLEDGNVLDVAHDIEFPLVHVL 557

Query: 191 AELDLLG 197
           A ++  G
Sbjct: 558 ATMEHTG 564


>gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter
           sphaeroides KD131]
          Length = 695

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 53/198 (26%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-------------GDGTVDI---IRI 56
           AE     +  +  DTET GLMP +D +  VQ++               D  V+    I  
Sbjct: 487 AEARLEDLTYVVFDTETTGLMPSQDEI--VQIAAVRIVNGRRVEAEVLDTLVNPHRSIPP 544

Query: 57  AAGQ---------KNAPNLVGM------LVDEKREKIFHYGRFDIAVLFYT---FGVRV- 97
           ++ +           AP++V +        +     + H   FD+  L       G R  
Sbjct: 545 SSTEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVL-VAHNAPFDMEFLRRAEPLIGRRFD 603

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
            P+  T + S +    ++ H L       LGI I +  + +              A  D 
Sbjct: 604 NPILDTVLLSAVLFGQSDVHSLDALTHR-LGITIPEEARHT--------------AIGDT 648

Query: 158 VHLHALRLQFTEKLQRLG 175
           V      L+    LQ  G
Sbjct: 649 VATADAFLKLLPMLQGRG 666


>gi|308486518|ref|XP_003105456.1| hypothetical protein CRE_21803 [Caenorhabditis remanei]
 gi|308256561|gb|EFP00514.1| hypothetical protein CRE_21803 [Caenorhabditis remanei]
          Length = 371

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  L+  +  L    ISK +  S+W    L D+Q+QYAA D + LH L
Sbjct: 206 PRLSLQAAVDRL--RPISKTETMSNWCGPQLRDDQIQYAAMDAIVLHNL 252


>gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
 gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum]
 gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
          Length = 1369

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 9/94 (9%)

Query: 43  QLSPGDGT----VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           Q+   DG     VD++    G +          DE   K++H   FD  + +   G+ V+
Sbjct: 688 QVKFHDGNSRVWVDVMDDIEGDEILQVFKEYFEDESILKVWHNYAFDRHIFYNH-GINVK 746

Query: 99  PV-FCTKIASRL---TRTYTNQHGLKDNLKELLG 128
                T   +RL   +R  +  + L+   KELL 
Sbjct: 747 GFGGDTLHMARLWNASRMNSGGYSLEALSKELLN 780


>gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
 gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
          Length = 977

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 21/184 (11%)

Query: 13  AECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQ 60
               AR    D +A+DTET    P   RL  + L+        I +              
Sbjct: 390 DAWLARVQAADRVAIDTETTSKDPHAARLVGISLAVTPWQGCYIPVGHNYAGVPEQLPLD 449

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119
           +    L   L  + ++K+    ++D+ VL    G+ +R V   T + S +   +   HG+
Sbjct: 450 EVLAVLKPWLESDAQQKVGQNIKYDMHVLANH-GITLRGVVDDTMLESYVLEAHRT-HGM 507

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
                  L       ++ +   A  +  +Q+       YAA D      L       ++ 
Sbjct: 508 DALAGRHLNRTTITYEEVAGKGAKAIGFDQVALDVATPYAAEDADVTLQLHRTLWPAIEA 567

Query: 174 LGRS 177
             R 
Sbjct: 568 SERL 571


>gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328]
 gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328]
          Length = 945

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 20/121 (16%)

Query: 21  DAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLV 67
             +A DTET  L PR   L    C      G    D+  I                P L 
Sbjct: 368 KPVAWDTETTSLEPRDANLVGIGC----CWGSELSDLAYIPLNHTQGEMLNIEEVLPALR 423

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L  E   K     +FD  ++  + G+ ++  VF T +AS +    +  H L D     
Sbjct: 424 PILESENYPKTLQNAKFD-RLILRSQGITLKGVVFDTMLASYVINPES-SHNLTDLSLRY 481

Query: 127 L 127
           L
Sbjct: 482 L 482


>gi|195128479|ref|XP_002008690.1| GI11678 [Drosophila mojavensis]
 gi|193920299|gb|EDW19166.1| GI11678 [Drosophila mojavensis]
          Length = 279

 Score = 46.9 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 17/148 (11%)

Query: 34  PRRDRLC---IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR--FDIAV 88
               R C   ++ ++  + T  +  + A     P L  +L  E   KI HY     D+  
Sbjct: 80  SFYGRHCKTSVIVIATANNT-YVFDLKALGVIFPELCVLLEAEYPRKILHYSHRICDL-- 136

Query: 89  LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK--------ELLGINI-SKAQQSSD 139
           LF+   + +  V  T +A  + R   +   L+D +         EL    I S  +   +
Sbjct: 137 LFHQHKLIINGVSDTFVALCVARQDRSHCTLQDAITIVLEISPTELTCHEITSANESVRN 196

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQF 167
           ++A  LS  QL+Y A   +  H L    
Sbjct: 197 FTARPLSKSQLRYLAKLAILQHKLHDTL 224


>gi|308473681|ref|XP_003099064.1| hypothetical protein CRE_27780 [Caenorhabditis remanei]
 gi|308267718|gb|EFP11671.1| hypothetical protein CRE_27780 [Caenorhabditis remanei]
          Length = 208

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  L+     +  + ISK++  S+W    L D+Q+QYAA D + LH +
Sbjct: 42  PRLSLQAAADRI-RVPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNI 89


>gi|302838257|ref|XP_002950687.1| hypothetical protein VOLCADRAFT_91127 [Volvox carteri f.
           nagariensis]
 gi|300264236|gb|EFJ48433.1| hypothetical protein VOLCADRAFT_91127 [Volvox carteri f.
           nagariensis]
          Length = 1036

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 37  DRLCIVQLSPGDG--TVDIIRIAAGQKNAP--NLVGMLVDEKREKIFHY-GRFDIAVLFY 91
            +L ++QL+       + I R+   +  AP   +  +L D     +       D  ++  
Sbjct: 644 PQLAMLQLATSSRVLLLHIARMRRKEVIAPGGPIHVLLSDPSLTWVGSGWSNSDRTIVKG 703

Query: 92  TFG--VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI-NISKAQQSS--DWSADDLS 146
            FG       V   ++A+R       + GL   + +LLG+    K ++ S  +W+A  LS
Sbjct: 704 AFGGATLPPAVVDVQVAAR--AAGWGRVGLLALVNDLLGMREFQKPRKLSMCNWAAASLS 761

Query: 147 DEQ 149
           + Q
Sbjct: 762 ERQ 764


>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
          Length = 927

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 56/176 (31%), Gaps = 21/176 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN----------APNL 66
            R    +A+DTET  L     RL  +  S   G    + +A                  L
Sbjct: 347 LRSAPLVALDTETTSLDEMAARLVGISFSVAPGEAAYLPLAHEDPGTAGQLPLDEVLARL 406

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKE 125
              L D    K   + ++D  VL    G+ V+  V  T + S +   +   H L+   + 
Sbjct: 407 RPWLEDPAAAKCGQHIKYDQHVLANH-GILVQGYVHDTMLQSYVLEVHRP-HNLESLAER 464

Query: 126 LLGINIS-------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            LG +         K      ++   +      YA  D     A+      +LQ  
Sbjct: 465 HLGRSAMRYEDLCGKGAAQIPFARVPIERA-APYACEDAEQCLAVHQVLWPQLQAQ 519


>gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH]
          Length = 926

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   ++  +  S   G    + +A    + P           L   L D 
Sbjct: 352 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 412 SKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVRTI 469

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L     +YAA D      L      ++ R 
Sbjct: 470 KYEDVAGKGAQQIGFDEVPLEQA-SEYAAEDADITLQLHHALYPQIARE 517


>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 927

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 13/122 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  + +A+DTET  L   R  +  +  S   G    I +A    +AP           L 
Sbjct: 348 QGAELVALDTETTSLDELRAEIVGLSFSVEPGAAAYIPLAHSGPDAPEQLPLDAVLERLK 407

Query: 68  GMLVDEKREKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
             L D  R K+  + ++D  V   +  GVR   V  T + S +   +   H L    +  
Sbjct: 408 PWLEDGSRAKLGQHVKYDRHVFANHDIGVRGY-VHDTMLQSYVLEVHKP-HNLASLAERH 465

Query: 127 LG 128
            G
Sbjct: 466 TG 467


>gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264]
          Length = 926

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   ++  +  S   G    + +A    + P           L   L D 
Sbjct: 352 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 412 SKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVRTI 469

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L     +YAA D      L      ++ R 
Sbjct: 470 KYEDVAGKGAQQIGFDEVPLEQA-SEYAAEDADITLQLHHALYPQIARE 517


>gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH
           391-98]
          Length = 299

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 40/149 (26%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDII---------------- 54
             + + +D ET G  P  DR+  +Q++          D  V  +                
Sbjct: 7   PANYVVIDFETTGFHPYNDRI--IQVAAVRYRNHELADQFVSFVNPERSIPSRITSLTGI 64

Query: 55  ------RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT-----FGVRVRPVFCT 103
                      Q+  P  +  L ++    + H   FD+  L         G     V  T
Sbjct: 65  TNYRVSDAPTVQEVLPLFLAFLGNDTI--VAHNASFDMRFLKSNMSRFQLGEPNNKVIDT 122

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINIS 132
            + ++    +     L+   K +LGI +S
Sbjct: 123 VLLAKKYMKHAPNFKLETL-KRMLGIRLS 150


>gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4]
          Length = 926

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   ++  +  S   G    + +A    + P           L   L D 
Sbjct: 352 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAKLTPWLEDA 411

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            ++K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 412 SKKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVRTI 469

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L     +YAA D      L      ++ R 
Sbjct: 470 KYEDVAGKGAQQIGFDEVPLEQA-SEYAAEDADITLQLHHALYPQIARE 517


>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
 gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
          Length = 906

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA----GQKNAP------NLVGMLVDE 73
           A+DTET  L     R+  + LS   G    I +A          P       L   L   
Sbjct: 332 ALDTETTSLDSFAARIVGISLSVTPGEACYIPLAHTAPGVADQLPREEVLARLKSWLESA 391

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
             +K+    ++D  V     G+ +  +   T + S +  +    H L       LG+   
Sbjct: 392 AHKKVLQNAKYDQHVFANH-GIALSGIAHDTMLQSYVIES-DKGHDLGQLCTRHLGLATI 449

Query: 133 KAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
             +      A  ++ +Q+       YAA D      +      +    
Sbjct: 450 AYEDLCGKGAKQITFDQVDIERAATYAAEDSDVTLRVHNVLHPQFASE 497


>gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1]
 gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens
           MI-1]
          Length = 930

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 32/149 (21%)

Query: 20  VDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT-----------VDIIRI-------AA 58
           ++ +A+D ET GL   +D    + +V++  G              +  ++I         
Sbjct: 2   LNFVALDLETSGLDCLQDEIIEIGLVKMVDGKEIDSFSTLIRPKGILPVKIKRLTGIKDH 61

Query: 59  GQKNAPNLVGMLVDEKREK-------IFHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLT 110
             ++AP L  +L      +       + H  +FD   L          P++ T   S+  
Sbjct: 62  ELQDAPKLQEVL--PVILQFIADLPLVGHNVKFDYDFLSTAVQSPLANPLYDTLELSKYL 119

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
               + H L       LGI+I    ++ D
Sbjct: 120 MPGASNHRLGYLCS-YLGIDIPNQHRALD 147


>gi|123496823|ref|XP_001327045.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
 gi|121909969|gb|EAY14822.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
          Length = 478

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 14/155 (9%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
             IA+D E      R++ + + QL    G + I R  +GQKN      +   +   K   
Sbjct: 76  KPIALDLE-WNPFTRQNGVNLFQLCTSRGCLLIHR-RSGQKNDEFFEFLKTHQFFMK--- 130

Query: 81  YGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKEL-----LGINISKA 134
               D  +L  TFG      V    +A+++ R        +  + +       G   +K 
Sbjct: 131 DISNDYPMLQTTFGKNFPFQVCD--VAAQILRPEKKSEKFEKMVVQFSHLKPTGKFKNKK 188

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
              S W   +L+  Q+ YAA D V L+A   +F +
Sbjct: 189 ISRSKWD-RNLNPRQILYAAFDAVGLYACLEEFQK 222


>gi|308471995|ref|XP_003098227.1| hypothetical protein CRE_12172 [Caenorhabditis remanei]
 gi|308269378|gb|EFP13331.1| hypothetical protein CRE_12172 [Caenorhabditis remanei]
          Length = 391

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +  L+    ++  + ISK++  S+W    L D+Q+QYAA D + LH +
Sbjct: 225 PRLSLQAAADQI-RVPISKSETMSNWCGAQLRDDQIQYAAMDAIVLHNI 272


>gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE]
 gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE]
          Length = 903

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 19/133 (14%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           +      + +   L   + D +R K+ H  +  + V              T +A+ L + 
Sbjct: 372 LDPAELDEADEQALAAWIADPRRPKVMHNAKNALRVFPEQGWRLEGVSMDTALAAYLVKP 431

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLHA 162
                 L     E LG  +         +    +D QL + A D             +  
Sbjct: 432 GRRSFALDALAVEYLGREL---------APAPSADGQLAFGADDRAEADALMAQARAVLD 482

Query: 163 LRLQFTEKLQRLG 175
           L   F  +L+ +G
Sbjct: 483 LGEAFAVRLEEVG 495


>gi|17509559|ref|NP_493422.1| hypothetical protein W04A8.4 [Caenorhabditis elegans]
 gi|3880478|emb|CAB04908.1| C. elegans protein W04A8.4, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 129

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 107 SRLTRTYTNQ--HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD--VVHLHA 162
           S+  RT   +    LK       G+++ K +  SDW+   L  +QL+YA  D  V+HL  
Sbjct: 41  SKFVRTNGTRSLLSLKAEATYWTGLDLHKGETMSDWTNTHLRGDQLRYAIMDTIVMHLI- 99

Query: 163 LRLQFT 168
           ++ +  
Sbjct: 100 IKQRLR 105


>gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 326

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 69/235 (29%), Gaps = 71/235 (30%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---------------------Q-- 43
           +  +   R+   +AV D E+ G     DR+    +V                     Q  
Sbjct: 9   LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPKKPIPQFV 68

Query: 44  -----LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GV 95
                +S G     ++      + A  L  +L  +    I H  RFD   L + F   G+
Sbjct: 69  AELTGISDG----MVVDAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGI 122

Query: 96  -RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
               P  C+   SR       +H L   ++  LGI +    +                A 
Sbjct: 123 GFSSPALCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AM 165

Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
           +DV    AL       L   G  +    C            L +R    L G  +
Sbjct: 166 ADVS---ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217


>gi|289621755|emb|CBI51666.1| unnamed protein product [Sordaria macrospora]
          Length = 645

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 34/184 (18%)

Query: 21  DAIAVDTE--TLGLMPRRDR--LCIVQLSPGD--GTVDI-IRIAAGQKNAPNLVGMLVDE 73
             + +D E           R  + ++Q++     G   I +     +  +P L  ++ D 
Sbjct: 179 KILGLDLEWEANAKPTHGPRQNVSVIQIASEKRIGIFHISLYPKKDELGSPLLKQIIEDP 238

Query: 74  KREK----IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL----------TRTYTNQHG- 118
              K    I          L    G++ R +   +  S L               N+ G 
Sbjct: 239 DVIKTGVWILGDCTR----LEKFLGIKGRGI---QELSHLYKLVKYSASGEHKLVNRMGV 291

Query: 119 -LKDNLKELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK--LQRL 174
            L   + E+L + + K   ++S WS   L+ +Q+ Y+ASD      L ++      ++  
Sbjct: 292 PLARMVNEILQLPMFKGSVRTSAWSK-PLNMDQILYSASDAYAGLKLPIRLAADVIVEEA 350

Query: 175 GRSD 178
           G  D
Sbjct: 351 GLLD 354


>gi|3298537|gb|AAC25931.1| hypothetical protein [Arabidopsis thaliana]
          Length = 217

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 26/143 (18%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD---IAVLFYTFGVRVR 98
           +QL  G     II+++  +     L   L D+    +  +   D   +    +   +   
Sbjct: 85  LQLCVG-TRCLIIQLSHCKYVPDVLRSFLEDQTITFVGVWNSQDKDKLERFHHQLDIW-- 141

Query: 99  PVFCTKIASRLTRTYTNQH------GLKDNLKELLG---INISKAQQSSDWSADDLSDEQ 149
                    RL       H        +  +K  LG   +   K    S+W A  LS +Q
Sbjct: 142 ---------RLVHIRHYLHPLLLSSSFETIVKVYLGHEGVTKDKELCMSNWGARSLSHDQ 192

Query: 150 LQYAASDVVHLHAL--RLQFTEK 170
           +  A+ DV     L  + +  + 
Sbjct: 193 IVQASHDVYVCCKLGVKERLWKM 215


>gi|297606613|ref|NP_001058743.2| Os07g0112400 [Oryza sativa Japonica Group]
 gi|255677453|dbj|BAF20657.2| Os07g0112400 [Oryza sativa Japonica Group]
          Length = 768

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG-RFDIAVLFYTFGV 95
            R   +QL  G     + ++A G      L   L D        YG R D   L    G+
Sbjct: 627 PRPGTLQLCVGS-RCLVFQVAQGNAFPAALRRFLADGGVAAFVGYGIRSDCRKLAAHHGL 685

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI-NISK--AQQSSDWSADDLSDEQLQY 152
            V    CT+    +T   ++        +ELLG+  I K  A   S W A  LS +Q++Y
Sbjct: 686 HVA---CTRELRAVTGMGSSSM--ARMAEELLGLAGIKKPAAVGRSRWDAPKLSKKQVKY 740

Query: 153 AASDVVHLHAL 163
           A  D    H L
Sbjct: 741 ACVDAFLSHRL 751


>gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92]
 gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92]
          Length = 879

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 24/192 (12%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP-----NLVGMLVDEKREK 77
           IA DTET  +  +  +L        D     + +A     AP     +     V  +  K
Sbjct: 319 IAFDTETTDIDTQSAKLVGFSFCFNDENAYYVPVAHSYLGAPKQVGTDFAAWAV-GQIYK 377

Query: 78  ---IFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              +    ++D  V+    G+     F  T + + L    +   G+    K L   +  K
Sbjct: 378 GCVVGQNLKYDFKVVKRNLGLEPPVKFKDTMVLAWLADP-SQAVGMDALAKRLYNYDTIK 436

Query: 134 AQQSSDWSAD-------DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCN 185
                D            L +   +YAA D          F   L      +LA +    
Sbjct: 437 ---FEDVVRRGETFASVPLENA-AKYAAEDAWITLKFYKSFLNLLDPA-LIELANAHEFP 491

Query: 186 FLMDRAELDLLG 197
           F++   +++ +G
Sbjct: 492 FILTLFDMESVG 503


>gi|85106391|ref|XP_962175.1| hypothetical protein NCU07036 [Neurospora crassa OR74A]
 gi|28923773|gb|EAA32939.1| predicted protein [Neurospora crassa OR74A]
          Length = 232

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 20/156 (12%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
                 +   L  +L D    K     R D   L+    +R+  V   ++    +R    
Sbjct: 67  FTTPGPDGKTLKTILEDPHTSKCLWDVRNDADALWAHHKIRLAGVTDIQLLENGSRPGGK 126

Query: 116 QH--GLKDNLKELLGINIS--------KAQQS-------SD-WSADDLSDEQLQYAASDV 157
            +  GL   +++ L +           K +         SD +S   L  + LQY  +DV
Sbjct: 127 TYLFGLDRCIEKDLSLRWEEKQPWARTKQEVRALMNMPNSDIFSRRPLDAKTLQYCVNDV 186

Query: 158 VHLHALRLQFTEKLQR--LGRSDLATSCCNFLMDRA 191
           V+L AL   +T+++ +   G  + A       +  A
Sbjct: 187 VYLPALHNLYTKRINKYGSGWLEKAMVESARRVTEA 222


>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1438

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 64/198 (32%), Gaps = 54/198 (27%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           P +C  +    +  D ET GL  + D+   L  V++  G+    I +          L  
Sbjct: 412 PKDCDLKTATYVVFDVETTGLSNQYDKIIELAAVKVKDGE---IIDKFERFSNPHERLSE 468

Query: 69  -----------MLVD-EKREKIF--------------HYGRFDIAVL-----FYTFGVRV 97
                      MLVD  + E++               H   FD+  +         G   
Sbjct: 469 TIKNLTHISDDMLVDAPEIEEVLTEFKSWVGDAIFVAHNASFDMGFIDTGYEHVGIGAST 528

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
             V  T   SR   T   +HGL    K+  G+ +++  +                A  D 
Sbjct: 529 NGVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDT 571

Query: 158 VHLHALRLQFTEKLQRLG 175
                + ++  ++L+ LG
Sbjct: 572 EATAYMFIKMLKQLEALG 589


>gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
 gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
          Length = 879

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 41/222 (18%)

Query: 2   TTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIR 55
            T+ + E  +  +  +      IA DTET GL  R  ++     C+      +     + 
Sbjct: 297 ATLILDENTLFDKLESLESESIIAFDTETTGLNAREAKIVGFSFCV-----SENEAFYVP 351

Query: 56  IAAGQKNAPNLVGMLVDEKRE-------KIFHYGRFDIAVLFYTFGVRVRPVF-CTKIAS 107
           +       P+ + M   ++          I H  ++D A++   F +     +  T I +
Sbjct: 352 LNHTYLAVPSQISMQTAKRALGQIYSHFIIGHNLKYDFAIIENNFKLTPPKKYADTMILA 411

Query: 108 RLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDV--- 157
            L    + +  + D    L           + K +   ++++ +L      YAA D    
Sbjct: 412 WL-YNPSLRVNMDDLALRLFDYKTLHFESVVKKGE---NFASVELEKA-CNYAAEDAYIT 466

Query: 158 --VHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
              +L+ L+      L +LG      S  NF+    +++  G
Sbjct: 467 LRFYLYFLKN-LEPNLLKLG----FESEFNFIEVLRKMEQSG 503


>gi|22831296|dbj|BAC16150.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|24414042|dbj|BAC22291.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 752

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG-RFDIAVLFYTFGV 95
            R   +QL  G     + ++A G      L   L D        YG R D   L    G+
Sbjct: 611 PRPGTLQLCVGS-RCLVFQVAQGNAFPAALRRFLADGGVAAFVGYGIRSDCRKLAAHHGL 669

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI-NISK--AQQSSDWSADDLSDEQLQY 152
            V    CT+    +T   ++        +ELLG+  I K  A   S W A  LS +Q++Y
Sbjct: 670 HVA---CTRELRAVTGMGSSSM--ARMAEELLGLAGIKKPAAVGRSRWDAPKLSKKQVKY 724

Query: 153 AASDVVHLHAL 163
           A  D    H L
Sbjct: 725 ACVDAFLSHRL 735


>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
 gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
          Length = 940

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEK 74
           +DTET  L     R+  V  S   G    + +A    +AP           L   L +  
Sbjct: 368 IDTETTSLDEMVARIVGVSFSIEPGAAAYVPLAHNYPDAPAQLPFDEVLARLKPWLENPA 427

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++K+  + ++D  V     G+ V+     T + S +   +   HGL    +  LG
Sbjct: 428 KKKLGQHIKYDRHVFANH-GIEVQGYAHDTMLQSYVLEAHRP-HGLASLAERHLG 480


>gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
 gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
          Length = 1334

 Score = 46.5 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
           VD++    G+           DE   K++H   FD  + +    + V+     T   +RL
Sbjct: 670 VDVMDDINGEAVLQEFKEYFEDESILKVWHNYAFDRHIFYNH-NINVKGFGGDTLHMARL 728

Query: 110 ---TRTYTNQHGLKDNLKELLGIN 130
               R  +  + L+   +ELL   
Sbjct: 729 WNAARQNSGGYSLEALCRELLNKT 752


>gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 870

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           L  ++ +E+  KI H G+  +  +     + ++   F T IA+ L  +  + + L   + 
Sbjct: 369 LKAIMENEELTKIIHDGKS-LVTVLNKLDISIKTFEFDTAIAAYLIDSARSSYDLLTLIN 427

Query: 125 ELLGINI 131
           E LG +I
Sbjct: 428 EYLGEDI 434


>gi|302836520|ref|XP_002949820.1| hypothetical protein VOLCADRAFT_90238 [Volvox carteri f.
           nagariensis]
 gi|300264729|gb|EFJ48923.1| hypothetical protein VOLCADRAFT_90238 [Volvox carteri f.
           nagariensis]
          Length = 625

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 113 YTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           Y ++  L   +  +L  ++ K  + +  +W    L   Q +Y A D     A+    + 
Sbjct: 504 YRSRWSLAALVATVLKRHLPKPNSLRCGNWERRPLDAAQKRYGALDAYAGLAVWAALSR 562


>gi|326498999|dbj|BAK05990.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 212

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 12/153 (7%)

Query: 23  IAVDTETLGLMPRRDR----LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + +D E     P   R    + ++QL  G     I ++         L   L D     +
Sbjct: 48  VGLDVE---WRPSFGRAQNPVALLQLCVG-RRCLIFQLLHADFIPLALRRFLADPDFRFV 103

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
               + D+  L    G+ V  V    +  A  + R +  Q GLKD    ++G N+ K ++
Sbjct: 104 GVGVQNDVDRLNDDHGLEVANVVDLRSLAADEMRRPWLRQAGLKDVAGVVMGANLHKPRR 163

Query: 137 SS--DWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +   W A  LS EQ+QYA  D      +  + 
Sbjct: 164 VTMGPWDACRLSQEQIQYACIDAFVSFEVGRKL 196


>gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
 gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
          Length = 879

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 22/187 (11%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-R 75
                 IA DTET GL  +  ++        +     + +          + +   +K  
Sbjct: 313 LDKESIIAFDTETTGLDAKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAI 372

Query: 76  EKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E IF      H  ++D  ++   F +   +    T I + L +  + +  + D    L  
Sbjct: 373 ELIFNHFVIGHNLKYDFKIIQNNFNLTLPQEYADTMILAWL-KNPSLRVNMDDLALRLFN 431

Query: 129 IN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
                    + K +  +   + +L     +YAA D        L F + L+     +LA 
Sbjct: 432 YETLHFESLVKKGENFT---SVELEKA-CKYAAEDAYITLRFYLYFLKNLE-TPLLELAK 486

Query: 182 SC-CNFL 187
           +C  +F+
Sbjct: 487 TCEFDFI 493


>gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05]
          Length = 970

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 29/141 (20%)

Query: 22  AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDI--IRIAAGQ-------KNAPNLVG 68
            +A DTET  L PR   L    C      G+   DI  I IA  Q       +    L  
Sbjct: 381 PVAWDTETTALNPREAELVGIGC----CWGNKPTDIAYIPIAHKQGKQLRKEQVLDRLQS 436

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELL 127
           +L      K+F   +FD  +  +  G+ +  V   T +AS +       H L +  ++ L
Sbjct: 437 ILESNNYPKVFQNTKFDRLIFKHQ-GINLDGVVLDTMLASYVLHPE-KSHKLSELCEQYL 494

Query: 128 ---------GINISKAQQSSD 139
                     + I K Q  +D
Sbjct: 495 EGITSLDYKDLGIGKKQTIAD 515


>gi|153840366|ref|ZP_01993033.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149745971|gb|EDM57101.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 166

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 29  LKAAELFAFDTETDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL 88

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D+ + K+    ++D +VL    G+ ++ + + T +AS +  +   +H +      
Sbjct: 89  KPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKYDTMLASYVYNSVGGKHDMDSLALR 147

Query: 126 LL 127
            L
Sbjct: 148 FL 149


>gi|325090671|gb|EGC43981.1| 3'-5' exonuclease/helicase [Ajellomyces capsulatus H88]
          Length = 935

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQK-------NAPNLVGMLVDEKREKIFHYGRFDIAVLFY 91
           + ++QL+     + I  +A            +P L  +L      K+    R D   L+ 
Sbjct: 787 VSVIQLAS-KERIAIFHLALFNPANSLQHLLSPTLKRILESPDIVKVGVAIRADCTRLYK 845

Query: 92  TFGVRVRPVFCTKIASRLTRTYTNQ-------HGLKDNLKELLGINISKA 134
             G+R   +       ++ + + N          L   ++E LG+ + K 
Sbjct: 846 FLGIRTNNICEVSRLHKVVKHHLNPKLIDKRLVNLAQQVEEHLGLPLDKD 895


>gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114]
 gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114]
          Length = 463

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 61/212 (28%), Gaps = 50/212 (23%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRL---CIV-----------QL-----SPGDGTV 51
           +    +      + VD ET G    +DR+    +V           QL     S  +   
Sbjct: 10  LSEAFSRLGRPVVVVDLETTGGNSYQDRITEVALVRFEQGRTTHYEQLVNPCRSIPEFVA 69

Query: 52  DIIRI-AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPVF 101
            +  I     KNAP    +  D     +    + H  RFD   L + F         P  
Sbjct: 70  RLTEIHDETVKNAPVFADIAGDLLPLLQGAVVVAHNSRFDYTFLRHEFARIHTDFAAPSL 129

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
           CT   SR       +H L   ++   GI  +   +                A +DVV   
Sbjct: 130 CTVQLSRRLYPEFYKHSLDSIIER-TGIQTANRHR----------------AMTDVV--- 169

Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
           AL       L               LM+   L
Sbjct: 170 ALCDYLELSLAEKNHQQW-DEHVRVLMNPKML 200


>gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
 gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
          Length = 911

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 12/122 (9%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
              D +A DTET  L   R  +  +  +   GT   + +A    +A            L 
Sbjct: 330 DKADRVAFDTETTSLDAMRAEIVGMSFAFEPGTAWYLPLAHTGPDADPQLPRAETLERLK 389

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKEL 126
             L  E+  K+ H+ ++D  VL    G+ +R +   T + S       N+H L    +  
Sbjct: 390 PWLESERHGKLGHHLKYDRNVLGNH-GITLRGIVDDTLLESFCLDAGANRHDLDSLAERH 448

Query: 127 LG 128
           L 
Sbjct: 449 LD 450


>gi|121635139|ref|YP_975384.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18]
 gi|120866845|emb|CAM10604.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18]
 gi|325132197|gb|EGC54893.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M6190]
 gi|325138130|gb|EGC60703.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis ES14902]
 gi|325198587|gb|ADY94043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis G2136]
          Length = 470

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 69/229 (30%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 18  LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
           V +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    PV
Sbjct: 78  VGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPV 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|12718307|emb|CAC28658.1| related to WERNER SYNDROME HELICASE [Neurospora crassa]
          Length = 699

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 24/161 (14%)

Query: 34  PRRDR--LCIVQLSPGD--GTVDI-IRIAAGQKNAPNLVGMLVDEKREK----IFHYGRF 84
               R  + ++Q++     G   I +     +  +P L  ++ D    K    I      
Sbjct: 199 SHGPRQNVSVIQIASEKRIGIFHISLYPRKDELASPLLKQIIEDADVVKAGVWIMGDCTR 258

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKAQ 135
               L    G+  + ++      +L +   +            L   +KE+L + + K  
Sbjct: 259 ----LKTFLGIEAKGIYELSHLYKLVKYSASGEHKLVNRRLVPLATLVKEVLQLPMFKGA 314

Query: 136 -QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            ++S+WS   L+ +Q+ Y+ SD      L      + ++L 
Sbjct: 315 VRTSEWSK-PLNMDQILYSGSDAYAGVQLFAMMDHQRKQLN 354


>gi|85101232|ref|XP_961112.1| hypothetical protein NCU03765 [Neurospora crassa OR74A]
 gi|28922651|gb|EAA31876.1| hypothetical protein NCU03765 [Neurospora crassa OR74A]
          Length = 699

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 24/161 (14%)

Query: 34  PRRDR--LCIVQLSPGD--GTVDI-IRIAAGQKNAPNLVGMLVDEKREK----IFHYGRF 84
               R  + ++Q++     G   I +     +  +P L  ++ D    K    I      
Sbjct: 199 SHGPRQNVSVIQIASEKRIGIFHISLYPRKDELASPLLKQIIEDADVVKAGVWIMGDCTR 258

Query: 85  DIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ---------HGLKDNLKELLGINISKAQ 135
               L    G+  + ++      +L +   +            L   +KE+L + + K  
Sbjct: 259 ----LKTFLGIEAKGIYELSHLYKLVKYSASGEHKLVNRRLVPLATLVKEVLQLPMFKGA 314

Query: 136 -QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            ++S+WS   L+ +Q+ Y+ SD      L      + ++L 
Sbjct: 315 VRTSEWSK-PLNMDQILYSGSDAYAGVQLFAMMDHQRKQLN 354


>gi|298710210|emb|CBJ26285.1| Chain A, Structure Of Mouse Wrn Exonuclease Domain pdb|2E6M|A Chain
           A, Structure Of Mouse Werner Exonuclease Domain
           [Ectocarpus siliculosus]
          Length = 249

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 1/106 (0%)

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            L  +L D    K       D   +    GV++      ++ +      T+   L     
Sbjct: 51  PLKALLEDPSIIKAGVAINTDATHMLNDNGVKMASTVDLRVLAVSKLVVTSSRTLAGLTA 110

Query: 125 ELLGINISKAQ-QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            LLG  + K   + S W +  LSDEQ  YA  D V    L     +
Sbjct: 111 CLLGRQLLKDTVRCSRWGSPRLSDEQRDYAIRDAVASALLYEAIHK 156


>gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
 gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
          Length = 315

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 38/148 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD------------IIRIAAGQ-- 60
            +D + +D ET G  P  D++  +Q++         VD              RI +    
Sbjct: 7   PLDYVVIDFETTGFNPYNDKI--IQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGI 64

Query: 61  -----KNAP------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRP---VFCTK 104
                 +AP       L    +      + H   FD+  L     +     P   V  T 
Sbjct: 65  TNYRVSDAPTIEEVLPLFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTV 123

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINIS 132
             ++    +   + L+   K +LGI +S
Sbjct: 124 FLAKKYMKHAPNYKLETL-KRMLGIRLS 150


>gi|221059461|ref|XP_002260376.1| 3'-5' exonuclease [Plasmodium knowlesi strain H]
 gi|193810449|emb|CAQ41643.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H]
          Length = 1124

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 4/139 (2%)

Query: 33  MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT 92
              R    ++ +   +    I  +   +K    L  +  D    KI +  +  I V+   
Sbjct: 513 NTYRGFTSLILVGTEECDYIIDTLYMFEKIH-ELNDITTDPNILKILYKSKNIIPVMQKD 571

Query: 93  FGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
           F +    +    + S      + ++ L   +     +N++ A    +     LS + +  
Sbjct: 572 FSIYFVNMIDISVCSDFL---SVRNSLHYLVHNYFHVNVNSAGNGLNALTRPLSPDLVSN 628

Query: 153 AASDVVHLHALRLQFTEKL 171
                 +L+ L       L
Sbjct: 629 LRMPFHYLYYLFEYVKTDL 647


>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
 gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
          Length = 927

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 13/122 (10%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LV 67
           +  D +A+DTET  L   R ++  +  S   G    I +A     AP           L 
Sbjct: 348 QAADLVALDTETNSLDELRAQIVGLSFSVEPGAAAYIPLAHSGPEAPEQLPLDTVLERLK 407

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
             L D  R K+  + ++D  V     G+ VR     T + S +   +   H L    +  
Sbjct: 408 PWLEDASRPKLGQHVKYDRHVFANH-GIDVRGYAHDTMLQSYVLEVHRP-HNLASLAERH 465

Query: 127 LG 128
            G
Sbjct: 466 TG 467


>gi|238482067|ref|XP_002372272.1| 3-5 exonuclease, putative [Aspergillus flavus NRRL3357]
 gi|220700322|gb|EED56660.1| 3-5 exonuclease, putative [Aspergillus flavus NRRL3357]
          Length = 382

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 24/151 (15%)

Query: 39  LCIVQLSPGDGTVD----IIRIAAGQKNA--PNLVGMLVDEKREKIFHYGRFDIAVLFYT 92
           + ++QL+           + R A G ++   P L  +L      K     + D   L   
Sbjct: 237 VSLIQLASSRRIALFHIAMFRPARGAEDLVPPTLKRILESPDVIKAGVSIKADCTRLRKY 296

Query: 93  FGVRVRPVFCTKIASRLTRTYTNQHG--------LKDNLKELLGINISKA--QQSSDWSA 142
            G+  R +F      +L +   +  G        L   ++E  GI ++K    + SDW++
Sbjct: 297 LGIETRGIFELSHLYKLVKYSQSNPGLVNKRTVNLSAQVEEHFGIPLAKDVEVRCSDWAS 356

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
                  L Y  S V     L      +L R
Sbjct: 357 A------LDY--SQVHCQLYLFPNVKNRLTR 379


>gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
 gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
          Length = 930

 Score = 46.1 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 28/191 (14%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
             E    A          I +DTET  L      L  + ++   G    I +      AP
Sbjct: 335 TTEAQFAALLDKLSRAGKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP 394

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L +   +KI    ++D  V      + +  +   + +AS +  ++
Sbjct: 395 EQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANY-DIALNGIAGDSMLASYIIESH 453

Query: 114 TNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              HGL +  +  LG+            +K    +D +    ++    Y A D      L
Sbjct: 454 L-GHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATE----YTAQDADFALRL 508

Query: 164 RLQFTEKLQRL 174
                 ++   
Sbjct: 509 EAHLRAQMDAK 519


>gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
 gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
          Length = 881

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 27/190 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-------KNAPNLVGM 69
            +  D  A+DTET  L   R  L  + ++P  G    + +A          +    L  +
Sbjct: 277 LQNSDGYAIDTETDSLDYMRANLVGISVAPAPGEAYYLPLAHQLSANLPYAETLTRLKPL 336

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLG 128
           L      K   + ++D  +     G+ +R +   T + S    +   +H L D     L 
Sbjct: 337 LEASAPPKSGQHHKYDRHIFARA-GIELRGIKDDTMLMSYTIDSTATRHNLDDLADYYLN 395

Query: 129 INISKAQQSSDW------SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGR 176
                  Q++ +       A  L+ +Q+       YA  D      L+     KL  + +
Sbjct: 396 ------HQTTTFEDIAGKGAKQLTFDQIPLETATAYACEDADITLRLKNHLAPKLAAVPQ 449

Query: 177 SDLATSCCNF 186
            D        
Sbjct: 450 LDALYRELEM 459


>gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
          Length = 926

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 21/169 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   ++  +  S   G    + +A    + P           L   L D 
Sbjct: 352 AFDTETTSLDPMLAQIVGLSFSVEPGHAAYVPLAHRGPDLPAQLPRDEVLAKLTPWLEDA 411

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
            R+K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 412 SRKKLGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 469

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
                  K  Q   +    L     +YAA D      L      ++ R 
Sbjct: 470 KYEDVAGKGAQQIGFDEVPLDKA-SEYAAEDADITLQLHRALYPQVARE 517


>gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 904

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 28/149 (18%)

Query: 7   HEGDIPAECAARYVDAIAVDT----ETLGLMPRRDRLCI---------------VQLSPG 47
            +G+IP E A    D + VDT    E L     R  L +               + +   
Sbjct: 310 TDGEIPVE-AVENRDEVGVDTLPLDEWLSTRRGRP-LAVAVTGVGTPATGDAHSIAIVDT 367

Query: 48  DGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFG--VRVRPV-FCT 103
           D    +  +A     A   L G L DE   K+ H  +   AV     G    +R +   T
Sbjct: 368 DRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELRGIEHDT 424

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINIS 132
            IA+ L R     + L D  +  L   ++
Sbjct: 425 AIAAYLLRPGQRTYELADVYQRHLQRQLN 453


>gi|148227398|ref|NP_001083214.1| exonuclease 3'-5' domain containing 2 [Xenopus laevis]
 gi|37748547|gb|AAH59966.1| MGC68561 protein [Xenopus laevis]
          Length = 511

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++   G   ++R+     +       L+ +L +    K+      D + L   +G+ V+ 
Sbjct: 1   MASFSGFCVLVRLPQLTSSGCTIPKTLLELLANSSVLKVGVGCWEDSSKLLNDYGLSVKG 60

Query: 100 VFCT-KIASRLTRTYT-NQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQ 149
                 +A R  R    N   LK   + +L   + K+ Q   S+W  ++L+ +Q
Sbjct: 61  CVDIRYLAMRHRRDILQNTLSLKSLSETILSFPLDKSFQLRCSNWDVEELTQDQ 114


>gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 945

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 28/149 (18%)

Query: 7   HEGDIPAECAARYVDAIAVDT----ETLGLMPRRDRLCI---------------VQLSPG 47
            +G+IP E A    D + VDT    E L     R  L +               + +   
Sbjct: 351 TDGEIPVE-AVENRDEVGVDTLPLDEWLSTRRGRP-LAVAVTGVGTPATGDAHSIAIVDT 408

Query: 48  DGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFG--VRVRPV-FCT 103
           D    +  +A     A   L G L DE   K+ H  +   AV     G    +R +   T
Sbjct: 409 DRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELRGIEHDT 465

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINIS 132
            IA+ L R     + L D  +  L   ++
Sbjct: 466 AIAAYLLRPGQRTYELADVYQRHLQRQLN 494


>gi|82793920|ref|XP_728231.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484482|gb|EAA19796.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 1841

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 128  GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              +++K  Q  +W+   LS + L+YA  DV+ L         KL
Sbjct: 1790 DKDVNKEYQIINWNFRPLSFKSLEYAILDVLILKKFYNLIQSKL 1833


>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
 gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
          Length = 947

 Score = 45.8 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 54/168 (32%), Gaps = 21/168 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A+DTET  L   R  +  + LS   G    I +     +AP           L   L D 
Sbjct: 374 ALDTETTSLDEMRAEIVGISLSVEPGAAAYIPLRHAGPDAPEQLPADEVLQRLKPWLEDA 433

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGIN-I 131
            R K+  + ++D  V     G+ V   V  T + S +   +   HGL            I
Sbjct: 434 ARPKLGQHVKYDRHVFANA-GIEVHGYVHDTMLQSYVLEVHRP-HGLASLALRHTNRTGI 491

Query: 132 S------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           S      K      ++   +      YA  D      +      +LQ 
Sbjct: 492 SYEDLCGKGAHQIPFAQVPVDKA-AAYACEDADQTLDVHRVLWPQLQA 538


>gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX]
 gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX]
          Length = 929

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 5/122 (4%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGM 69
           + AE AA     +A+  E  G     D + +  L+   G    +        +   L   
Sbjct: 354 LAAEIAAGARTGVAL--EWSGERDG-DIIRL-ALAVPSGRAVCLDPTQLDPADEAALTAW 409

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           L D    K+ H  ++ +  L+            T IA+ L         L       LG 
Sbjct: 410 LADPAYPKVLHGVKWALRALWARGWTLDGVESDTAIAAYLLEPGRRNFELATLCLRYLGR 469

Query: 130 NI 131
            +
Sbjct: 470 EL 471


>gi|226954027|ref|ZP_03824491.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
 gi|226835238|gb|EEH67621.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
          Length = 84

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 1  MTTIRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
          M      + D+        +    A+DTE + +     +L + Q+   DG V ++     
Sbjct: 1  MFQFIQQQEDLAVLLHKMEHCSTYALDTEFIKVDTLYPKLGVCQI-NLDGQVALLD--GT 57

Query: 60 QKNAPNLVGMLVDEKREKIFHYGRFDI 86
            +  +    + + + + IFH    DI
Sbjct: 58 VLDLTHFWDKVFNAQ-QNIFHACSEDI 83


>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111
           I   A              DEK  KI+H   FD  +     G+ VR  F  T   +RL  
Sbjct: 118 IDNFAQNSDLIMLFKEYFEDEKILKIWHNYGFDKHIFGNN-GINVRGFFGDTMHMARLLD 176

Query: 112 T--YTNQHGLKDN-LKELLGINISKAQQ 136
                 ++ L    L     I + K ++
Sbjct: 177 PSKQPQEYSLAKLSLAYEEEIKLVKTKR 204


>gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1402

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 51/205 (24%)

Query: 22  AIAVDTETLGLMPRRDRLCIV--------QLS-------PGDGTV------------DII 54
            + VD ET G   +RDR+  +        Q++         +G +            D++
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITEKFSTFVDPEGKIPVRISELTGIYQDMV 449

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRLT 110
             A    +A              + H  +FDI  L   +   G+        T   SR  
Sbjct: 450 DKAPKLSDAILEFEKFASGSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELSRRL 508

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            T  + H L   + E L + + K    +D               SD      + +   E+
Sbjct: 509 LTDLSSHKLNK-VAEFLNVEL-KHHHRAD---------------SDAETTAGIFISLVER 551

Query: 171 LQRLGRSDLATSCCNFLMDRAELDL 195
           L+  G         N +   A+ DL
Sbjct: 552 LKARG-YKWLK-ELNSIESNAKADL 574


>gi|189194097|ref|XP_001933387.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978951|gb|EDU45577.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 477

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 22/110 (20%)

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT----------- 110
            AP+L  ++ +    K  +    D+A L   FG++ R       A  L+           
Sbjct: 115 LAPSLRKIIENRDIVKTGYSIIGDLARLRKHFGLQPRG------AMELSYLNVLINEERM 168

Query: 111 --RTYTNQHGLKDNL-KELLGINISKAQ-QSSDWSADDLSDEQLQYAASD 156
             +TY  + G+   + +   G  + K   Q  DW +  ++     YAA+D
Sbjct: 169 NFKTYYTKGGMGGLVNEHFHGYTLIKDSGQRKDWLS-PMTANMKSYAAAD 217


>gi|154315768|ref|XP_001557206.1| hypothetical protein BC1G_04456 [Botryotinia fuckeliana B05.10]
 gi|150846852|gb|EDN22045.1| hypothetical protein BC1G_04456 [Botryotinia fuckeliana B05.10]
          Length = 307

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 70/193 (36%), Gaps = 31/193 (16%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS--PGDGTVDII-------RIAAGQKNAPNLVGMLV 71
            ++ +D E + +   +  + I+Q+   P   T  +          +    +   L  +L 
Sbjct: 87  PSVYIDLEGVDIGR-KGSIAILQVYILPTKRTFLVDVHNLRGQAFSTPNSSGLTLKAILE 145

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH--GL-----KDNLK 124
                K+    R D   L+  FG++++ V   ++    TR+++ +   GL     +D ++
Sbjct: 146 SIFIPKVIFDVRNDSDALYSHFGIKLQGVIDLQLMELATRSHSQKFLSGLGRCMDQDLVQ 205

Query: 125 --ELL---------GINI---SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
             E L         G+ +    K  +   ++   L    + Y   DV  +  L   +  K
Sbjct: 206 TPEELEVRSSIKKRGVQLFAPEKGGRYEVFNDRPLDPAIVDYCVQDVQLMPQLWDIYNAK 265

Query: 171 LQRLGRSDLATSC 183
           L  + +   A   
Sbjct: 266 LSLMDKRWAAKIE 278


>gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
 gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
          Length = 908

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 10/129 (7%)

Query: 9   GDIPAECAAR-YVDAIAVDT--ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN 65
           G + A  +AR     I V    E         RL  + L+       +   A  + +   
Sbjct: 330 GQLAAWLSARAGTGRIGVAATGEF---KHGAGRLSGLALASDGHHAWLDPSALDEADENA 386

Query: 66  LVGMLVDEKREKIFHYG-RFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNL 123
           L   L D    K  H   RF +A    + G  +  V   T +A+ L R       L+   
Sbjct: 387 LAAWLADPTATKAVHDAKRFGLAC--RSHGWNLDGVTSDTALAAYLVRPDLKSDSLEALA 444

Query: 124 KELLGINIS 132
              LG  ++
Sbjct: 445 TRYLGRELN 453


>gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
 gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
          Length = 469

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 74/210 (35%), Gaps = 51/210 (24%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDR------LCIV--QLSPGDGTVD 52
           MTT R    DI  +   R +  +  DTET G +P +D       L +V  Q +PG+    
Sbjct: 257 MTT-RTETRDI-QDVPLRDLTYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDL 314

Query: 53  IIRI---------------AAGQKNAPNLVGM------LVDEKREKIFHYGRFDIAVLFY 91
           ++                  A  K+AP++V           +    + H   FD++    
Sbjct: 315 LVNPGRAIPASSTAVHRITDAMVKDAPDMVHAGRKFHSFARDAVL-VAHNAPFDLSFFHR 373

Query: 92  TF---GVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSD 147
                G++   PV  T + S +    T  H L +  K  LGI +    + +         
Sbjct: 374 YAPKIGMKFDHPVLDTVLLSAVLFGITEGHTLDELAKR-LGIELLDKHRHT--------- 423

Query: 148 EQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
                A  D +    + L+    L+  G +
Sbjct: 424 -----AIGDAIATRDIFLRMIPMLEARGLT 448


>gi|91788599|ref|YP_549551.1| 3'-5' exonuclease [Polaromonas sp. JS666]
 gi|91697824|gb|ABE44653.1| 3'-5' exonuclease [Polaromonas sp. JS666]
          Length = 198

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 57/168 (33%), Gaps = 24/168 (14%)

Query: 17  ARYVDAIAVDTETLGLMPR-----RDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLV 71
                A+  DTE             D   IVQLS  +    I ++         +  ++ 
Sbjct: 43  LAGTAALGFDTE--SRPTFAKNEASDGPHIVQLSTLE-KAYIFQL-QDADCRRAVAMLME 98

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-----RTYTNQHGLKDNLKEL 126
                K       D   L   FGV  + V        L      + Y    G++  +  +
Sbjct: 99  SPAIIKAGFGLGDDRRRLISKFGVDPQGVLD------LNTVFRKKGYRKDMGVRGAVAVV 152

Query: 127 LGINISKA--QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                 K+    +S+W+   LSD Q+ YAA+D     ALR+    +L 
Sbjct: 153 FNKRFIKSRKATTSNWANSKLSDAQIIYAANDAY--AALRVFMALELD 198


>gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
 gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
          Length = 988

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 18/129 (13%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVDIIRI-----------AAGQKN 62
              + +A DTET  L PR     +V +      G+  V  I +                 
Sbjct: 384 DPQNPVAWDTETTDLDPRNAN--LVGIGCCWGMGENDVAYIPLGHNITTNLEKNLQLNTV 441

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L  +L      K F   +FD  +  Y        +F   +AS L     + H L D 
Sbjct: 442 LSTLDKILASRDYPKTFQNAKFDRLIFKYQGVTLDGVIFDPMLASYLLNP-DHTHNLTDL 500

Query: 123 LKELLGINI 131
               LG+ +
Sbjct: 501 ALRYLGLQL 509


>gi|194467815|ref|ZP_03073801.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
 gi|194452668|gb|EDX41566.1| DNA polymerase III, epsilon subunit [Lactobacillus reuteri 100-23]
          Length = 283

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 73/207 (35%), Gaps = 53/207 (25%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP----GDGTVDIIRIAAGQ 60
            H  D  A+        ++VDTET GL P   D++  +QLS      D  VD        
Sbjct: 2   THSTDQTAKF---PTSYVSVDTETTGLYPMYGDKI--IQLSAIKYIDDKLVDTFDTLINP 56

Query: 61  K------------------NAPNLVGMLVD-----EKREKIFHYGRFDIAVLF-YTFGVR 96
                              N P    ++ D     E    + H   FD + L      + 
Sbjct: 57  DGSNNNAKSVNNISESSLKNQPTFDEVIGDFVNFVEDLPWVGHNLSFDFSFLKSEELKIA 116

Query: 97  V--RPVFCT-KIASRLTRTYTNQHGLKDNLKELLGINIS-KAQQSSDWSADDLSDEQLQY 152
              +    T +IA  +     N+  L+   K+    NI  K   +S      L D Q+  
Sbjct: 117 SFKKNSVDTLQIARSIYGNKGNK--LQQLAKKF---NIDYKNLHNS------LYDAQI-- 163

Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDL 179
           AAS   HL ++    T K +++ + D+
Sbjct: 164 AASLYQHLRSVFQ--TNKCKKINKKDI 188


>gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 1402

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 51/205 (24%)

Query: 22  AIAVDTETLGLMPRRDRLCIV--------QLS-------PGDGTV------------DII 54
            + VD ET G   +RDR+  +        Q++         +G +            D++
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITERFSTFVDPEGKIPVRISELTGIYQDMV 449

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRLT 110
             A    +A              + H  +FDI  L   +   G+        T   SR  
Sbjct: 450 DKAPKLSDAILEFERFASGSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELSRRL 508

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            T  + H L   + E L + + K    +D               SD      + +   E+
Sbjct: 509 LTDLSSHKLNK-VAEFLNVEL-KHHHRAD---------------SDAETTANIFISLVER 551

Query: 171 LQRLGRSDLATSCCNFLMDRAELDL 195
           L+  G         N +   A+ DL
Sbjct: 552 LKARG-YKWLK-ELNSIESNAKADL 574


>gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
 gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
          Length = 1450

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 36/161 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVDII--------RIAAG 59
           P +      + I  D ET+GL      +  +++      G+  VD           I   
Sbjct: 414 PKDVPLLEENFIVFDLETMGLNSHEHEI--IEIGAVKLRGNRIVDRFSQLVNPQKPIPKK 471

Query: 60  QKNAPNLVGMLVD--EKREKIF--------------HYGRFDIAVLFYT----FGVRVRP 99
            +   N+   +VD     E++               H   FD+  +        G    P
Sbjct: 472 IQELTNITQEMVDNMPTIEEVLPKFMEFVGDATMVAHNAAFDMGFIRRDVKRLLGYDYTP 531

Query: 100 -VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
            +  T   +R        +GLK+   ++LG+++    ++ D
Sbjct: 532 AIIDTLQMARDLYPDLKGYGLKNL-NKVLGLSLESHHRAVD 571


>gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
 gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
          Length = 970

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 49/141 (34%), Gaps = 29/141 (20%)

Query: 22  AIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNLVG--------- 68
            +A DTET  L PR   L    C      G+   DI  I    K    L           
Sbjct: 381 PVAWDTETTALNPREAELVGIGC----CWGNKPTDIAYIPIAHKQGKQLRKEQVFDRLQS 436

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELL 127
           +L      K+F   +FD  +  +  G+ +  V   T +AS +       H L +  ++ L
Sbjct: 437 ILESNNYPKVFQNTKFDRLIFKHQ-GINLDGVVLDTMLASYVLHPE-KSHKLSELCEQYL 494

Query: 128 ---------GINISKAQQSSD 139
                     + I K Q  +D
Sbjct: 495 EGITSLDYKDLGIGKKQTIAD 515


>gi|254672325|emb|CBA05474.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
           meningitidis alpha275]
          Length = 312

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 9   LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 69  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  +    C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217


>gi|161870321|ref|YP_001599491.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
 gi|161595874|gb|ABX73534.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
          Length = 461

 Score = 45.8 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 9   LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 69  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  +    C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217


>gi|225450559|ref|XP_002277541.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 208

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 16/161 (9%)

Query: 17  ARYVDAIAVDTE-------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           A     + +D E       ++       +LCI      +    I+++    +   +L G 
Sbjct: 49  AGKPMVVGLDIEWRPNRIPSMSNKSATLQLCI------NNKCLILQLFYMDEIPQSLKGF 102

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLG 128
           L+D     +      DI  L   +G+        +I A +       + GLKD   E++ 
Sbjct: 103 LLDSNFTFVGVEVGADIDKLKNEYGLECSCSADVRILAMQRWPGRFRRPGLKDLAWEVVN 162

Query: 129 INISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + + K +    S+W A  L++ Q++YA  D    + +  + 
Sbjct: 163 LRMKKPKHVCMSNWEARVLNENQVEYACIDAYASYRIGHKL 203


>gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
 gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
          Length = 1022

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 41/152 (26%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP------------ 64
            +     AVDTET  +  R  ++  +  S        + +A    N P            
Sbjct: 402 LQAAPYFAVDTETTSINWREAQIVGLSFSVQAHEAYYLPLAHVDYNEPQKKAKNKKEEAE 461

Query: 65  -------------------------NLVGMLVDEKREKIFHYGRFDIAVLFYT---FGVR 96
                                     L  +L +    KI  + ++D  VL        + 
Sbjct: 462 QAKLLANATVDPLIAKQLDRDTVLAKLKPILENPNIGKIGQHLKYDAHVLSKYGIELNMS 521

Query: 97  VRPV-FCTKIASRLTRTYTNQHGLKDNLKELL 127
            +     T +AS +      +H + D  +  L
Sbjct: 522 PKNWEMDTMLASYVLNAAATRHSMDDLARHYL 553


>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
 gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
          Length = 1435

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 49/157 (31%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGT--------------VDII 54
           P          +  D ET GL    DR   L  V++  G+                  I 
Sbjct: 410 PQAIDLDLATYVVFDVETTGLSSVYDRIIELAAVKMRNGEVIDTFEAFINPGYHLSAMIT 469

Query: 55  RIAAGQK----NAPNLVGMLV-----DEKREKIFHYGRFDIAVL---FYTFGVRV--RPV 100
            +         +AP    ++       +    + H   FD+  L   +   G+ V  +PV
Sbjct: 470 ELTGITDAMLADAPPEAEVMARFAEFSKDTILVAHNASFDMGFLNKTYARLGMPVPDQPV 529

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   SRL       H L    K   G+ + +  ++
Sbjct: 530 IDTLELSRLVNPDMRSHRLNVLAKHY-GVTLEQHHRA 565


>gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism
           HF4000_APKG10H12]
          Length = 891

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 21/173 (12%)

Query: 44  LSPGDGTVDIIRIAAGQKNAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
            S    +   + +A    +             L  ML D +  KI H  + D+  L    
Sbjct: 338 FSTAARSASYVPLAQDGLDLTGSLDGGTVFGTLGPMLEDPQVRKIGHDLKRDMLWLAAH- 396

Query: 94  GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI-------SKAQQSSDWSADDL 145
            +R+R +   T IAS L         ++    E  G           K  ++ D+     
Sbjct: 397 EIRLRGLELDTMIASYLLDATRTTPTVETVALEHAGYQALTADTVRGKGAKAPDFDRLP- 455

Query: 146 SDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
            D  L YA                +L +   ++L        +   A+++  G
Sbjct: 456 PDGVLAYACERADLPLQAAEPLRARLDQERLAELYRELEQPLIPVLADIETAG 508


>gi|159469486|ref|XP_001692894.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277696|gb|EDP03463.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 112

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           KE +G      +Q  D     L+ +Q+ YA+ DVVHL+ L        +   R
Sbjct: 42  KEAVGAAFKADEQYRD--RRPLTSDQIDYASGDVVHLYGLYDALHLVSRDTWR 92


>gi|326573170|gb|EGE23139.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 835

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 57/191 (29%), Gaps = 48/191 (25%)

Query: 2   TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           T +     +I       +   A+A D ET GL      L  +  +         ++    
Sbjct: 159 TALYPTNDEIDDVLIRLKQYPALACDIETTGLE-LGSELYSIAFAWSQHEGCAFKV---- 213

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIA-VLFYTF--------------GVRVRPVFCTKI 105
            +   L           IFH   FDI  ++++ F                  R +  TKI
Sbjct: 214 TDKVQLKRFFESYSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKI 273

Query: 106 ASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL--H 161
            + L    T  N  GLK+   E +G                       YA  DV H+  H
Sbjct: 274 IAYLATNNTQGNILGLKELSHEFVG----------------------NYAI-DVKHVLNH 310

Query: 162 ALRLQFTEKLQ 172
            L       L+
Sbjct: 311 PLATVLEYNLK 321


>gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
 gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
          Length = 929

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 70/207 (33%), Gaps = 25/207 (12%)

Query: 6   VHEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + +  + A          +++DTET GL     +L  +  S        + +A     AP
Sbjct: 338 LTDAQLDAWLHKLMAAPLVSLDTETTGLDGMTAQLVGISFSIEAHQAAYLPLAHHYPGAP 397

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
           +          L   L     +K+    ++D  +     G+    +   T + S +  ++
Sbjct: 398 DQLGREHALQKLKHWLESPAHKKLGQNLKYDQHIFANH-GIAFAGIAEDTLLQSYVLESH 456

Query: 114 TNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
              H + +     LG++       + K  +   +   DL     +YAA D      L   
Sbjct: 457 KP-HEMGNLALRHLGLSTVSYADVVGKGAKQIGFDQVDLETA-TRYAAEDADITLQLHQT 514

Query: 167 FTEKLQRLGRSDLATSCCNFLMDRAEL 193
            + +LQ  GR D        L  R  L
Sbjct: 515 LSPQLQ--GRLDAVYRQIE-LPVREVL 538


>gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 928

 Score = 45.4 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 30/144 (20%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
              +   +   K+    ++DI VL         P+F   IA  L       H L    K 
Sbjct: 405 FKEIFESDTILKVGQNLKYDINVLKKYGIRMNYPIFDILIAHYLINPE-YLHNLDFLAKT 463

Query: 126 LLGINI--------SKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171
            L   I        SK +         LS  Q+       YA  +   +  L+  F   +
Sbjct: 464 YLNYRIINTEELIGSKKESQ-------LSVRQVPLSLLADYACENADIVLKLKNIFEPII 516

Query: 172 QRLGRSDLATSCCNFLMDRAELDL 195
           ++           + L  R EL L
Sbjct: 517 RKSN--------FSNLFYRIELPL 532


>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111
           I   A              DEK  KI+H   FD  +     G+ VR  F  T   +RL  
Sbjct: 118 IDNFAQNSDLIMLFKDYFEDEKILKIWHNYGFDKHIFGNN-GINVRGFFGDTMHMARLLD 176

Query: 112 T--YTNQHGLKDN-LKELLGINISKAQQ 136
                 ++ L    L     I + K ++
Sbjct: 177 PSKQPQEYSLAKLSLAYEEEIKLVKTKR 204


>gi|147818277|emb|CAN64722.1| hypothetical protein VITISV_026723 [Vitis vinifera]
          Length = 219

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 16/161 (9%)

Query: 17  ARYVDAIAVDTE-------TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM 69
           A     + +D E       ++       +LCI      +    I+++    +   +L G 
Sbjct: 60  AGKPMVVGLDIEWRPNRIPSMSNKSATLQLCI------NNKCLILQLFYMDEIPQSLKGF 113

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTYTNQHGLKDNLKELLG 128
           L+D     +      DI  L   +G+        +I A +       + GLKD   E++ 
Sbjct: 114 LLDSNFTFVGVEVGADIDKLKNEYGLECSCSADVRILAMQRWPGRFRRPGLKDLAWEVVN 173

Query: 129 INISKAQQ--SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + + K +    S+W A  L++ Q+ YA  D    + +  + 
Sbjct: 174 LRMKKPKHVCMSNWEARVLNENQVDYACIDAYASYRIGHKL 214


>gi|320591752|gb|EFX04191.1| 3 -5 exonuclease helicase [Grosmannia clavigera kw1407]
          Length = 525

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 38/183 (20%)

Query: 21  DAIAVDTETL--GLMPRRDR--LCIVQLSPGD--GTVDI------------IRIAAGQKN 62
             +  D E +   +     R  +C+VQL+     G   +            +        
Sbjct: 120 PLLGFDLEWMMNAMRWHGPRRNVCLVQLASPSRIGLFHLSLYPVRERGGEFLDNDINSLV 179

Query: 63  APNLVGMLVDEKREK----IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-- 116
           AP L  +L D K  K    I    + D   L     +  R +       +L R       
Sbjct: 180 APTLRRILEDAKTIKTGVCI----KGDATRLRNHLNIDTRGMIELSHLHKLVRYSRTGDV 235

Query: 117 -------HGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                    L   ++E L + + K    +S DWS   L+ EQ+ Y+ASD      +    
Sbjct: 236 QLVNRRLVPLAVQVQEHLRLPMFKGADVRSGDWSK-PLNTEQIIYSASDAYAAVQIFSVL 294

Query: 168 TEK 170
             +
Sbjct: 295 ERE 297


>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 1012

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 54/191 (28%)

Query: 26  DTETLGLMPRRDRLCIV---------------QLSPGDGTV--DIIRIAAGQ----KNAP 64
           D ET GL  R D++  +               QL   +  +   ++ +        +N P
Sbjct: 4   DIETTGLSSRNDKITEIGAVKIKNGMIVDRFSQLINPEKEIPQVVVDLTGISNAMVENEP 63

Query: 65  NLVGM---LVD--EKREKIFHYGRFDIAVLFYTFG----VRVRPVFCTKIASRLTRTYTN 115
            +  +     D  +    + H  +FDI+ +   +     V   P+  T + +R T +   
Sbjct: 64  TIEEVILKFYDFAKDAVLVAHNAKFDISFIRREYANNNLVFNHPILDTLVLARATMSDMK 123

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           +  L    K  LG+++  A +                A +D      + ++  EK++R  
Sbjct: 124 RFNLGTLCKN-LGVSLVGAHR----------------AVNDAEATAEVFIKLIEKIKRE- 165

Query: 176 RSDLATSCCNF 186
                    NF
Sbjct: 166 ------EEFNF 170


>gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
 gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
          Length = 903

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 21/138 (15%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111
           +      + +       + D  R K+ H  +  + V     G R+  V   T +A+ L +
Sbjct: 372 LDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTMDTALAAYLVK 430

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLH 161
                  L     E LG  ++ A           SD QL + A D             + 
Sbjct: 431 PGRRSFALDALAVEYLGRELAPAAA---------SDGQLAFGADDRAEQDALMAQARAVL 481

Query: 162 ALRLQFTEKLQRLGRSDL 179
            L   FT +L+ +G ++L
Sbjct: 482 DLGDAFTTRLKEVGAAEL 499


>gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 903

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 21/138 (15%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111
           +      + +       + D  R K+ H  +  + V     G R+  V   T +A+ L +
Sbjct: 372 LDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTMDTALAAYLVK 430

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLH 161
                  L     E LG  ++ A           SD QL + A D             + 
Sbjct: 431 PGRRSFALDALAVEYLGRELAPAAA---------SDGQLAFGADDRAEQDALMAQARAVL 481

Query: 162 ALRLQFTEKLQRLGRSDL 179
            L   FT +L+ +G ++L
Sbjct: 482 DLGDAFTTRLKEVGAAEL 499


>gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
          Length = 953

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 15/118 (12%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +  D ++  + H G+FD++ L           F T IA+ L      +  LKD    
Sbjct: 408 LQPLFSDPQKAVVAHNGKFDMSALSLIGLDVPHLSFDTAIAAALL---GKRQSLKDLAFA 464

Query: 126 LLG------INISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKL 171
            L       I +++ +         ++ +Q+       YA++DV     L   F  +L
Sbjct: 465 ELRDADDRPIEMTRIETLIGTGKKQITMDQVAIEQVTPYASADVDMTARLLALFMPQL 522


>gi|242057157|ref|XP_002457724.1| hypothetical protein SORBIDRAFT_03g012385 [Sorghum bicolor]
 gi|241929699|gb|EES02844.1| hypothetical protein SORBIDRAFT_03g012385 [Sorghum bicolor]
          Length = 183

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 19/143 (13%)

Query: 23  IAVDTETLGLMPRR-----DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           + +D E     P        ++ I+QL  G     ++++    +   ++   L D     
Sbjct: 32  VGLDCE---WKPNYRSWTTSKVAILQLCAG-TRCLVLQLLYVDRVPASVRSFLADPDVLF 87

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN------QHGLKDNLKELLGINI 131
           +      D+A L   +G+         + SR             + GLK   +E+LG+ +
Sbjct: 88  VGIGVGEDVAKLDADYGLTCAAHVD--LESRCNDYLGRYTGVGRRLGLKGYAEEVLGLFM 145

Query: 132 SK--AQQSSDWSADDLSDEQLQY 152
            K      S+W   DL + Q++Y
Sbjct: 146 EKPRGVTMSNWEKHDLEEAQIRY 168


>gi|70951584|ref|XP_745021.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56525206|emb|CAH81778.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 260

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              ++K  Q  +W+   LS + L+YA  DV+ L    +    KL
Sbjct: 209 DKEVNKEYQIINWNFRPLSFKSLEYAILDVLILKQFYILIQSKL 252


>gi|189207443|ref|XP_001940055.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976148|gb|EDU42774.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 216

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 56/208 (26%)

Query: 9   GDIPAECAARYVDAI------AVDTETLGLMPRRDRLC----------IVQLSPGDGTVD 52
           GD+  E  A +   I       +D E +        LC          ++      G V 
Sbjct: 16  GDLVDELVACHAPPIPFSPTMYIDLEGVN-------LCREGSVLIFTLLIDTVMPPGRVY 68

Query: 53  IIRIAAGQKNAPN--------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104
           +I +      A N        L+ +L DEK  K+F   R D   LF  F V ++ V   +
Sbjct: 69  LIDVHTLGAQAFNTAGAKQKTLIDILQDEKIPKVFFDVRNDSDALFAHFDVALQGVGDVQ 128

Query: 105 IAS----RLTRTYTNQHGLKDNLKELLGINI------------SKAQQ--------SSD- 139
           +      + T +     GL   ++    I+              K ++        S D 
Sbjct: 129 LMESATWKTTVSLKFLSGLAKCVETYQPISYGSGGLANWKRAKEKGERLFKAGHGGSYDV 188

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQF 167
           ++   + ++ + Y   DV +L  L  +F
Sbjct: 189 FNQRQIPEDIISYCVGDVQYLPELLNRF 216


>gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 808

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 47  GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105
           G   + +  +  G            D   +K++H   FD  +L    G+  +  +  T  
Sbjct: 78  GKNRLWVDVLDGGDDVLRVFKRYFEDPSIQKVWHNYSFDKHILSRH-GIHPQGFYADTMH 136

Query: 106 ASRL--TRTYTNQHGLK 120
            +RL  +    ++ G  
Sbjct: 137 LARLNDSARRGSKGGYA 153


>gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 681

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 39/164 (23%)

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRVR-PVFCTKIASRLTRTY 113
             QK   N      DE   K+     FDI    VLF   G+ +  P   T +   L    
Sbjct: 352 PDQKFVENFKKYFEDENINKV----SFDIKEDIVLFNKLGIEINFPYDDTMLMHYLIDPS 407

Query: 114 TNQHGLKDNLKELLGINI-----------SKAQQSSDWSADDLSDEQL-QY------AAS 155
            + + LK   +  L   +           +K       S  DLS+++L +Y      A  
Sbjct: 408 RSSYDLKTFSQAFLKYEVLNEEDLLGKGRNKK------SYKDLSEKELGKYLSSIINAIE 461

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATSC-CNFLMDRAELDLLGW 198
           D +         T+KL+ L   +L   C        AE+++ G+
Sbjct: 462 DSL------DILTDKLKELSMYELYKDCEIKLSKVLAEMEITGF 499


>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom
           phytoplasma]
          Length = 1492

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 65/219 (29%), Gaps = 58/219 (26%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNA--PNLVG 68
           +   +  + + +D ET G    RDR+     V++  G        +    K+    NL+ 
Sbjct: 397 DFGLKNHNYVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEYFDELINPGKDIKISNLIQ 456

Query: 69  MLVD--------------------------EKREKIFHYGRFDIAVLFYTFG-----VRV 97
            L +                               + H   FDI  L  TF        +
Sbjct: 457 RLTNISDEILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPL 516

Query: 98  RPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
            PV  T  +A +          L+  +K    I +              S+ Q   A  D
Sbjct: 517 LPVIDTLTLAQKYFNKILKYFSLEKIVKSF-KIKLD-------------SEGQYHNALFD 562

Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
                 + L+  E+L+       A    NF   +  LD+
Sbjct: 563 ARATALIFLEMLEQLE-------AQKIFNFYDLQGSLDI 594


>gi|254670274|emb|CBA05558.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
           meningitidis alpha153]
          Length = 461

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 9   LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 69  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  +    C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217


>gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole]
          Length = 609

 Score = 45.4 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58
            +  HE D+          +  + +DTET  L   +    + ++Q         ++ +  
Sbjct: 16  NVVEHEDDLDGFESFIRSNLRILGLDTETTDLGIYKPDFGIRLIQFGNP-WESWVLPVER 74

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112
           G       V  L   +R  + H   FD+ V+  T GV +  ++     TKI S L   R 
Sbjct: 75  GGVFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133

Query: 113 YTNQHGLKDNLKELLGINIS 132
           Y    G    L+EL    I 
Sbjct: 134 YKEG-GTGHKLEELTKFYID 152


>gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
           6725]
          Length = 1402

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 64/205 (31%), Gaps = 51/205 (24%)

Query: 22  AIAVDTETLGLMPRRDRLCIV--------QLS-------PGDGTV------------DII 54
            + VD ET G   +RDR+  +        Q++         +G +            D++
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITERFSTFVDPEGKIPVRISELTGIYQDMV 449

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRLT 110
             A    +A              + H  +FDI  L   +   G+        T   SR  
Sbjct: 450 DKAPKLSDAILEFEKFASGSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELSRRL 508

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            T  + H L   + E L I + K    +D               SD      + +   E+
Sbjct: 509 LTDLSSHKLNK-VAEFLNIEL-KHHHRAD---------------SDAETTAGIFISLVER 551

Query: 171 LQRLGRSDLATSCCNFLMDRAELDL 195
           L+  G         N +   A+ DL
Sbjct: 552 LKARG-YKWLK-ELNSIESNAKADL 574


>gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 871

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 21/140 (15%)

Query: 47  GDGTVDIIRIAAG-----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100
            +G   +I          +K    L   + DE  +K+ H  +  +      + + ++   
Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKN-LITFLNKYDIDIQGFD 404

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           F T IA+ L  +    + + D +   L  +I      SD      S++     +S   +L
Sbjct: 405 FDTAIAAYLIDSSKANYEVFDLINRFLEKDI-----KSD------SNDLKAICSS---YL 450

Query: 161 HALRLQFTEKLQRLGRSDLA 180
             L  +  E L +    +L 
Sbjct: 451 KKLYEKLKEMLHKEDMDELY 470


>gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917]
 gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917]
          Length = 996

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 31/190 (16%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG--------------- 59
                   +A+DTET  L P + +L  V +  G    D+  I  G               
Sbjct: 383 LCRDPAQPVALDTETSDLNPFKAQLVGVGVCWGPELDDLAYIPVGHRPSAEPSLEDSSAI 442

Query: 60  -----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
                      L   L   +  K     ++D  +L          V  T +A    R   
Sbjct: 443 QQLPLDTVLAQLAPWLASAEHPKALQNAKYDRLILLRHGLPLGGVVMDTLLA-DYLRDAA 501

Query: 115 NQHGLKDNLKELLGINI---------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
            +HGL    +   GI           +K  ++S ++  +++   L Y   DV     L L
Sbjct: 502 AKHGLDAMAERDYGIQPTLFSDLVGKAKDGKASCFAEVEINQAAL-YCGMDVHLTRRLAL 560

Query: 166 QFTEKLQRLG 175
              ++L  +G
Sbjct: 561 DLRQQLAAMG 570


>gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
 gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
          Length = 871

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 21/140 (15%)

Query: 47  GDGTVDIIRIAAG-----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100
            +G   +I          +K    L   + DE  +K+ H  +  +      + + ++   
Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKN-LITFLNKYDIDIQGFD 404

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
           F T IA+ L  +    + + D +   L  +I      SD      S++     +S   +L
Sbjct: 405 FDTAIAAYLIDSSKANYEVFDLINRFLEKDI-----KSD------SNDLKAICSS---YL 450

Query: 161 HALRLQFTEKLQRLGRSDLA 180
             L  +  E L +    +L 
Sbjct: 451 KKLYEKLKEMLHKEDMDELY 470


>gi|115304357|ref|YP_762649.1| DNA polymerase [Cyanophage Pf-WMP4]
 gi|110559071|gb|ABG75891.1| DNA polymerase [Phormidium phage P4]
 gi|113201851|gb|ABI33163.1| PfWMP4_19 [Phormidium phage Pf-WMP4]
          Length = 630

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 53/179 (29%), Gaps = 35/179 (19%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRIAA---------GQKNAPNLVGMLV 71
            IA+D ET             Q++    G +  + +A+         G   A  L  +L 
Sbjct: 4   YIALDLETE------------QVARMPHGKIHALFLASNNGAEFYPWGLAAAAVLEKLLT 51

Query: 72  DEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
           D     +     +D+ VL +    +       T + +         + L+   + +    
Sbjct: 52  DPDVIFVIQNAAYDVWVLRHHGVDIPPGRYVDTMVLAHCVNPQQGDYSLESYGRSVDDEK 111

Query: 131 IS---KAQQSSDW--SAD-------DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           +    +  ++  W    +         +    +Y   DV        +    L+R  R 
Sbjct: 112 VDYRTEMVRAGLWEGGKEDPSVYDVPFNPIMERYGLQDVRLTLKWWGELLPHLERDARL 170


>gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 824

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 40/124 (32%), Gaps = 12/124 (9%)

Query: 17  ARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRI--------AAGQKNAPNLV 67
                A   D ET GL P     +     S   GT   + +                 L 
Sbjct: 399 LAQQPAFVFDLETAGLDPVHDPIVG-YSFSWQKGTAYYLPVRAPAGEPVLNPDTVLAALK 457

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKEL 126
            +  +   EK  H  +FD+ VL  + GV +  V   + +A  L       HGL D   + 
Sbjct: 458 PVFENPAIEKRNHNIKFDLIVLAAS-GVELAGVAGDSMVAHYLLDPGARAHGLDDLTLDE 516

Query: 127 LGIN 130
           L   
Sbjct: 517 LRHT 520


>gi|297823019|ref|XP_002879392.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325231|gb|EFH55651.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 133

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 26/124 (20%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKI--------FHYGRFDIAVLFYTFGVRVRPVFC 102
             II+++        L   L D     +        FH     + + +    +R      
Sbjct: 14  CLIIQLSHCNYIPDILRSFLEDRTITVVGVWNNQERFH---QRLEI-WRLVDIR------ 63

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAASDVVH 159
                    T+  +   +  ++E LG   +   K    S+W A +LSD+Q+  A+ DV  
Sbjct: 64  -----DYLPTWLWKCSFEMIVEECLGYQGVRKDKEICRSNWGARNLSDDQIVQASHDVYV 118

Query: 160 LHAL 163
              L
Sbjct: 119 CCKL 122


>gi|262375191|ref|ZP_06068425.1| 3'-5' exonuclease [Acinetobacter lwoffii SH145]
 gi|262310204|gb|EEY91333.1| 3'-5' exonuclease [Acinetobacter lwoffii SH145]
          Length = 219

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+  D                 L  + V+  + K+    + D A LF   G+ +  V
Sbjct: 71  LIQLATLDKAYL---FQMNDSIWDFLKPIFVNRDQIKVGFGLKND-AHLFRKKGIELNSV 126

Query: 101 FCTKIASRLTRTYT--NQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQ 151
                 S+  + +   N  GLK+ +  L  +N  K+++  +S+W++  LS  Q+ 
Sbjct: 127 IE---LSKCFKAFGLNNPVGLKNAMALLFQVNFPKSKRISTSNWASKKLSPAQID 178


>gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1]
 gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1]
          Length = 608

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58
            +  HE D+          +  + +DTET  L   +    + ++Q         ++ +  
Sbjct: 16  NVVEHEDDLDGFESFIRSNLRILGLDTETTDLGIYKPDFGIRLIQFGNP-WESWVLPVER 74

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112
           G       V  L   +R  + H   FD+ V+  T GV +  ++     TKI S L   R 
Sbjct: 75  GGVFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133

Query: 113 YTNQHGLKDNLKELLGINIS 132
           Y    G    L+EL    I 
Sbjct: 134 YKEG-GTGHKLEELTKFYID 152


>gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054]
          Length = 895

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 28/90 (31%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
           + L+ G         A  + +       L D KR K  H  +  +               
Sbjct: 348 IALATGTAAAWFDPAALAEADDRAFTAWLADPKRPKALHIAKQVMRAFAERGWSFAGVTA 407

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            T +A+ L +       L    +E LG ++
Sbjct: 408 DTALAAYLEKPGRRAFTLDVLAEEYLGRSL 437


>gi|167465490|ref|ZP_02330579.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 190

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
             ++ A  L+   +      + H+  FD++ L     V      CT++ S+L        
Sbjct: 56  IPEELAIPLLACFMSGSIV-VAHHAPFDLSFLARYL-VEPSSFVCTRVLSKLVEP-GESA 112

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            L   + E  GI ++   +                A +DV     +  Q   +   LG
Sbjct: 113 SLAA-VAERRGIELTGHHR----------------AMADVEATVKIFQQLKAEADALG 153


>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
 gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
          Length = 914

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 14/135 (10%)

Query: 6   VHEGDIPAECAARYVDAIA-VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E D+    A     A+  +DTET  L+P + +L  + L    G    I +A    +AP
Sbjct: 321 LTEADLDRWLAIIDAAALTSIDTETTSLVPLQAQLVGISLCCEPGVAAYIPVAHRYADAP 380

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
                      +   L D  + K+    ++D  +     G+ +R +   T + S +  ++
Sbjct: 381 VQLSRELVLGKMQAWLEDPAKAKVGQNLKYDSHIFANH-GITLRGIAHDTMLESYVFESH 439

Query: 114 TNQHGLKDNLKELLG 128
              H +       LG
Sbjct: 440 -RSHDMDSLALRHLG 453


>gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 204

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
             ++ A  L+   +      + H+  FD++ L     V      CT++ S+L        
Sbjct: 70  IPEELAIPLLACFMSGSIV-VAHHAPFDLSFLARYL-VEPSSFVCTRVLSKLVEP-GESA 126

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            L   + E  GI ++   +                A +DV     +  Q   +   LG
Sbjct: 127 SLAA-VAERRGIELTGHHR----------------AMADVEATVKIFQQLKAEADALG 167


>gi|24663607|ref|NP_648618.1| CG11263, isoform A [Drosophila melanogaster]
 gi|281366175|ref|NP_001163435.1| CG11263, isoform B [Drosophila melanogaster]
 gi|7294518|gb|AAF49860.1| CG11263, isoform A [Drosophila melanogaster]
 gi|21430260|gb|AAM50808.1| LD32220p [Drosophila melanogaster]
 gi|220950120|gb|ACL87603.1| CG11263-PA [synthetic construct]
 gi|220959182|gb|ACL92134.1| CG11263-PA [synthetic construct]
 gi|272455186|gb|ACZ94706.1| CG11263, isoform B [Drosophila melanogaster]
          Length = 265

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           I  I A       L  +L  ++  K+ HY       L +   + +  +F T +A  L+  
Sbjct: 89  IFDIKALGLIFLELAKILEADQPRKVIHYSHRIADHLLHRQRISLGGIFDTFVAVCLSSN 148

Query: 113 YTNQHGLKDNLKELLGINISKA----QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
               + L + +  + G+ + K     +   +++A  L+  Q++Y A  V   H +     
Sbjct: 149 TRIPYTLPEAISLVFGLPMEKVTGGCESQRNFTARPLTHSQMRYLAKLVQLQHIMHDHLN 208


>gi|326567456|gb|EGE17571.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 835

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 57/191 (29%), Gaps = 48/191 (25%)

Query: 2   TTIRVHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           T +     +I       +   A+A D ET GL      L  +  +         ++    
Sbjct: 159 TALYPTNDEIDDVLIRLKQYPALACDIETTGLE-LGSELYSIAFAWSQHKGCAFKV---- 213

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIA-VLFYTF--------------GVRVRPVFCTKI 105
            +   L           IFH   FDI  ++++ F                  R +  TKI
Sbjct: 214 TDKVQLKRFFESYSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKI 273

Query: 106 ASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL--H 161
            + L    T  N  GLK+   E +G                       YA  DV H+  H
Sbjct: 274 IAYLATNNTQGNILGLKELSHEFVG----------------------NYAI-DVKHVLNH 310

Query: 162 ALRLQFTEKLQ 172
            L       L+
Sbjct: 311 PLATVLEYNLK 321


>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
 gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
          Length = 937

 Score = 45.0 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 26/189 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-------- 68
              VD + +DTET  + P   +L  + LS   G    I +A    +              
Sbjct: 351 LDEVDLVCIDTETTSIDPMLAQLVGISLSVKPGEACYIPVAHRGPDVAGFDAAAQLSRDT 410

Query: 69  -------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120
                   L DE R+K+  + ++D  V      + +R +   T + S +  ++ N HG+ 
Sbjct: 411 VLARMKLWLEDESRKKVGQHLKYDAHVFANH-DIALRGIEHDTMLESYVLESHRN-HGMD 468

Query: 121 DNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              + +L +          K      +    L     +YAA D      L      K+  
Sbjct: 469 ALAERVLHLKTITYEAVCGKGASQIGFDEVPLDRA-TEYAAEDADVTLRLHRTLFPKVAE 527

Query: 174 LGRSDLATS 182
             +      
Sbjct: 528 DDKLRYVYE 536


>gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 888

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 19/139 (13%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                 + +   L   L D +R K+FH  +  + V              T +A+ L +  
Sbjct: 358 DPSELDEADERALTAWLADPERPKVFHNAKGAMRVFAEHGWTIEGVTMDTALAAYLVKPG 417

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLHAL 163
                L     E L   ++ A            D QL + A D             +  L
Sbjct: 418 RRSFDLDALSLEYLHRELAPAAA---------PDGQLAFGADDGAEAEALMVQARAILDL 468

Query: 164 RLQFTEKLQRLGRSDLATS 182
              F  +L  +G +DL   
Sbjct: 469 GEAFEGRLAEVGAADLLRD 487


>gi|86608996|ref|YP_477758.1| exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557538|gb|ABD02495.1| exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 783

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 21/122 (17%)

Query: 65  NLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYT 114
            L  ++ D     + +  +FH+   D+ +L   F          P+FCT  A++      
Sbjct: 44  PLAQIVADLRRLAQGKTLVFHHADHDLKILKQAFDQVNQDWLPNPIFCTWSAAKQCFPNL 103

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT-EKLQR 173
             + L+    + LGI +     +S      L+ +    A+ D +  + L    T  +L+ 
Sbjct: 104 AGYSLEYL-SKHLGIQLESGYFNS-----KLAHD----ASYDALFTYHLYRHLTHAQLKA 153

Query: 174 LG 175
             
Sbjct: 154 QN 155


>gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 892

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 46  PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY----TFGVRVRPVF 101
             D    +        +   L   L D +  K  H  +  +  L+       G+      
Sbjct: 352 TSDDAACVDVPELTPDDEKALAAWLTDPQATKAMHGAKGPLLALWARQLDLAGLDS---- 407

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            T++A+ L R     + L D     LG  +
Sbjct: 408 DTQLAAYLLRPDQRSYDLDDLALRHLGREL 437


>gi|325204438|gb|ADY99891.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240355]
          Length = 470

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 18  LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 78  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  +    C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|325134568|gb|EGC57212.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M13399]
 gi|325144729|gb|EGC67024.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240013]
 gi|325205795|gb|ADZ01248.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M04-240196]
          Length = 470

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 18  LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 78  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  +    C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW]
 gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW]
          Length = 699

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 37/117 (31%), Gaps = 23/117 (19%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRLTRTYTNQHG 118
            P     + D     + H   FD+  L       GVR   PV  T I SR  +    +H 
Sbjct: 578 LPPFRAFVGDA--VLVAHNAAFDLKFLRLKQRAAGVRFDGPVLDTMILSRQIQGDHGEHS 635

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           L       LGI +                     A  D +   A+ L+  + L+  G
Sbjct: 636 LDGLAAR-LGIGLVDRHS----------------AMGDSLMTAAIFLRLMDMLETQG 675


>gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
 gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
          Length = 879

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 31/164 (18%)

Query: 20  VDAIAVDT--ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
            +A+AVD   ETLGL           LS  +  + +   A   K+   L   L D    K
Sbjct: 340 AEALAVDIDGETLGL-----------LSAENKGLKLDLAALDAKDEQVLRTWLADRGAPK 388

Query: 78  IFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            FH  +     L    G  +  V   T +A+ L R       L D L+   G ++ +   
Sbjct: 389 WFHDSKQSFHALRQQ-GFALDGVEHDTSVAAYLVRPDLRSWSLGDVLQRHAGRDLPENSG 447

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           S       L   Q   A         L     ++L   G+++L 
Sbjct: 448 S-------LERAQ---AV------RELVGIMNQELTDAGQAELY 475


>gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 362

 Score = 45.0 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101
           + GD  V +  + AG+     L   + D      FH   FD  VL +       PV    
Sbjct: 37  AIGDEPVSVWDLTAGEPIPSRLRKAIADPDTLLYFHNSHFDRTVLRHAMPELAPPVERWR 96

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            T + +     ++    L     E+LG+   K
Sbjct: 97  DTMVQA---LAHSLPGALAALC-EVLGVPQDK 124


>gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11]
 gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11]
          Length = 471

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 47/149 (31%), Gaps = 36/149 (24%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVD-------IIRI 56
             C+   +     DTET GLMP +D +  VQ+               +D        I  
Sbjct: 270 ENCSLSELSFTVFDTETTGLMPNKDDI--VQIGAVRVVNGRMVPGERIDQLVNPGRPIPP 327

Query: 57  AAG---------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGV----RVR 98
           A+            +AP  +  + D      +   + H   FD+A L     V       
Sbjct: 328 ASSKVHGISDTMVADAPQPLEAVADFHEFARESVIVAHNAPFDLAFLQKYGKVAGLEWPH 387

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           P+  T + S +       H L    + L 
Sbjct: 388 PILDTVLLSAVVFGSNEVHTLDALCERLC 416


>gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
 gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
          Length = 986

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 46/138 (33%), Gaps = 23/138 (16%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN--------------- 65
             IA+DTET  L P +  L  +    G+   DI+ I  G KN  +               
Sbjct: 385 KPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHKNKEDDLIEINQINQLKIEE 444

Query: 66  ----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKD 121
               L       +  K     ++D  +L     +    V  T +A  +    T +H L +
Sbjct: 445 VIFALQDWFSSNENPKTLQNAKYDRLILLRHGIILNGVVMDTLLADYICDA-TLKHSLDE 503

Query: 122 NLKELLGINISKAQQSSD 139
                 G    K +  SD
Sbjct: 504 IAYREFGF---KPKSFSD 518


>gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9]
 gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9]
          Length = 988

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 18/126 (14%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRI-----------AAGQKNAPN 65
           + +A DTET  L PR     +V +      G+  V  I +                    
Sbjct: 387 NPVAWDTETTDLDPRNAN--LVGIGCCWGTGENDVAYIPLGHNITSNLEKNLPLNTVLST 444

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +LV     K F   +FD  +  Y        VF   +AS +       H L D    
Sbjct: 445 LEKILVSGDYPKTFQNAKFDRLIFKYQGITLDGVVFDPMLASYVLNP-DRTHNLTDLALR 503

Query: 126 LLGINI 131
            LG+ +
Sbjct: 504 YLGLQL 509


>gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277]
 gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277]
          Length = 863

 Score = 44.6 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 22/191 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP-----NLVGMLVDEKREK 77
           +A DTET  +  +  RL        D     + ++     AP           +  +  K
Sbjct: 303 VAFDTETTDVDTQNARLVGFSFCFNDEEAYYVPVSHEYLGAPKQASEKFAAWAIS-QIYK 361

Query: 78  ---IFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
              I    ++D  V+    G+        T I + L     +  G+    K L   +  K
Sbjct: 362 GCVIGQNLKYDFKVVKRNLGLEPPVNFKDTMILAWLMDP-GSSVGMDALAKRLYDYDTIK 420

Query: 134 AQQSSDWSAD-------DLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
                D            L +   +YAA D          F   L     +   T    F
Sbjct: 421 ---FEDVVKRGETFASVALENA-AKYAAEDAWITLKFYKSFLNLLDPELLALADTHEFAF 476

Query: 187 LMDRAELDLLG 197
           ++   +++  G
Sbjct: 477 ILTLFDMEREG 487


>gi|332642872|gb|AEE76393.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1049

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 50/176 (28%)

Query: 44  LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
              G   + +  +   G+           D   +K++H   FD  ++    G+++     
Sbjct: 319 FGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNY-GIKLSGFHG 377

Query: 102 CTKIASRL---TRTYTNQHGLKDNL--------------KELLG---------------- 128
            T   +RL   +R  +  + L+                  EL G                
Sbjct: 378 DTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKD 437

Query: 129 --------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                   I   K  Q  D       +  + Y+A D +    L     ++LQ    
Sbjct: 438 GSEGKLVIIPPVKELQMED------REAWISYSALDSISTLKLYESMKKQLQAKKW 487


>gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
 gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1044

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 50/176 (28%)

Query: 44  LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
              G   + +  +   G+           D   +K++H   FD  ++    G+++     
Sbjct: 314 FGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNY-GIKLSGFHG 372

Query: 102 CTKIASRL---TRTYTNQHGLKDNL--------------KELLG---------------- 128
            T   +RL   +R  +  + L+                  EL G                
Sbjct: 373 DTMHMARLWDSSRRISGGYSLEALTSDPRVLGGTETKEEAELFGKISMKKIFGKGKLKKD 432

Query: 129 --------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                   I   K  Q  D       +  + Y+A D +    L     ++LQ    
Sbjct: 433 GSEGKLVIIPPVKELQMED------REAWISYSALDSISTLKLYESMKKQLQAKKW 482


>gi|147777289|emb|CAN60287.1| hypothetical protein VITISV_011782 [Vitis vinifera]
          Length = 208

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 21/157 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           ARY + +A+                +QL  G     I ++    +   +L+  L D    
Sbjct: 66  ARYTNPVAI----------------LQLCVG-RRCLIFQLLYAPEIPTSLIDFLGDTDYT 108

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTY-TNQHGLKDNLKELLGINISK- 133
            +    + D   L     +RV  V    + A+R+  T      G+K   +E+LG  + K 
Sbjct: 109 FVGVGIQADSQKLLNDHNLRVGNVVDLAVLAARVLNTRELRNAGIKRLAREVLGREVEKP 168

Query: 134 -AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
                S W  D LSD Q+ YA  D      +      
Sbjct: 169 KHVARSRWDTDWLSDAQVHYACVDAFVSFEVGRSLNA 205


>gi|42565057|ref|NP_188690.3| POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding /
           DNA-directed DNA polymerase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana]
 gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana]
 gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana]
 gi|332642871|gb|AEE76392.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1034

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 50/176 (28%)

Query: 44  LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
              G   + +  +   G+           D   +K++H   FD  ++    G+++     
Sbjct: 304 FGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNY-GIKLSGFHG 362

Query: 102 CTKIASRL---TRTYTNQHGLKDNL--------------KELLG---------------- 128
            T   +RL   +R  +  + L+                  EL G                
Sbjct: 363 DTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKD 422

Query: 129 --------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                   I   K  Q  D       +  + Y+A D +    L     ++LQ    
Sbjct: 423 GSEGKLVIIPPVKELQMED------REAWISYSALDSISTLKLYESMKKQLQAKKW 472


>gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1088

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 50/176 (28%)

Query: 44  LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
              G   + +  +   G+           D   +K++H   FD  ++    G+++     
Sbjct: 269 FGDGKSCIWVDVLGENGRDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNY-GIKLSGFHG 327

Query: 102 CTKIASRL---TRTYTNQHGLKDNL--------------KELLG---------------- 128
            T   +RL   +R  +  + L+                  EL G                
Sbjct: 328 DTMHMARLWDSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKD 387

Query: 129 --------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                   I   K  Q  D       +  + Y+A D +    L     ++LQ    
Sbjct: 388 GSEGKLVIIPPVKELQMED------REAWISYSALDSISTLKLYESMKKQLQAKKW 437


>gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem]
 gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem]
          Length = 608

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58
            +  HE D+          +  + +DTET  L   +    + ++Q         ++ +  
Sbjct: 16  NVVEHEDDLDGFESFIRSNLRILGLDTETTDLGIYKPDFGIRLIQFGNP-WESWVLPVER 74

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112
           G       V  L   +R  + H   FD+ V+  T GV +  ++     TKI S L   R 
Sbjct: 75  GGAFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133

Query: 113 YTNQHGLKDNLKELLGINIS 132
           Y    G    L+EL    I 
Sbjct: 134 YKEG-GTGHKLEELTKFYID 152


>gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c]
 gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c]
          Length = 923

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 59/193 (30%), Gaps = 26/193 (13%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI   E         R     A+DTET  L P +  L  +  +   G    +        
Sbjct: 325 TIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFAAEVGCAAYLPFGHDYPG 384

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           AP           L  +L D    K+  +G++D+ VL     V       T + S +  +
Sbjct: 385 APVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTS 444

Query: 113 YTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS----DEQLQYAASDVVHLH 161
              +H +    +  LG         + K  +         S     E  +YAA D     
Sbjct: 445 GHARHDMDTLARRHLGYETMKYVDLVGKGAKQI-----PFSHVGVQEATRYAAEDADITL 499

Query: 162 ALRLQFTEKLQRL 174
            L      KL   
Sbjct: 500 RLHCVLAPKLLAE 512


>gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR]
 gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR]
          Length = 886

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 24/127 (18%)

Query: 79  FHYG-RFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           FH   R DI +L       VR  F T +A+ L     +   L     + LG  +S  +  
Sbjct: 392 FHDAKRTDI-LLRRLGNKPVRAGFDTMLAAYLLDPSVSNLDLAALSIKYLGQELSPGE-- 448

Query: 138 SDWSADDLSDEQLQY----AASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAE 192
                         Y    A +D++    L     EKL  L   DL        L   A+
Sbjct: 449 -------------DYRSFCAQADII--LRLVPVLHEKLAELNMLDLYFDVEMPLLHILAD 493

Query: 193 LDLLGWE 199
           ++  G +
Sbjct: 494 MEFSGVK 500


>gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39]
          Length = 959

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 64/182 (35%), Gaps = 34/182 (18%)

Query: 21  DAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLV 67
             +A DTET  L PR   L    C      G    D+  I                  L 
Sbjct: 382 KPVAWDTETTSLEPRDANLVGIGC----CWGSELSDLAYIPLNHTQGEMLNIEQVLEALR 437

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L  E+  K     +FD  ++  + G+ ++  VF T +AS +    +  H L D     
Sbjct: 438 PILESEEYPKTLQNAKFD-RLILRSQGITLKGVVFDTMLASYIINPES-SHNLTDLSLRY 495

Query: 127 ---LGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
              LGI        + K +  +D   + ++     Y   DV     +  +  + L+ L R
Sbjct: 496 LPDLGIVAQSYSQLVPKGKTIADLDINTVA----NYCGLDVFTTFQITQKMQDILKDLPR 551

Query: 177 SD 178
            +
Sbjct: 552 LN 553


>gi|68058814|ref|XP_671377.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56487494|emb|CAH93756.1| hypothetical protein PB000180.00.0 [Plasmodium berghei]
          Length = 127

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
              ++K  Q  +W+   LS + L+YA  DV+ L         KL
Sbjct: 76  DKEVNKEYQIINWNFRPLSFKSLEYAILDVLILKNFYNLIQSKL 119


>gi|212545983|ref|XP_002153145.1| hypothetical protein PMAA_010410 [Penicillium marneffei ATCC 18224]
 gi|210064665|gb|EEA18760.1| hypothetical protein PMAA_010410 [Penicillium marneffei ATCC 18224]
          Length = 285

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 46/215 (21%)

Query: 1   MTTIRVHEGDIP--------AECAARYVDA-IAVDTETLGLMPR----------RD--RL 39
           M +I V + D            C  + V   +  D E + L             +   ++
Sbjct: 1   MASITVVDTDSALQEFLTGIENCKVKDVPPSLYFDLEGVRLGRNGTISIISVFIQPLNQV 60

Query: 40  CIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
            ++ +        +I          +L  +L      K+F   R D   +    G+R++ 
Sbjct: 61  YLIDVFTLSEKAFLI----TNDKQTSLKTILEAPSIPKVFFDVRNDSDAMCSHHGIRLQC 116

Query: 100 VFCTKIASRLTRTYTNQH--GLKDNLKELLG---INISKAQQ--SSD---W--------- 140
           V   ++     R  + ++  GL   ++       I + K +Q  +S    W         
Sbjct: 117 VKDLQVMELAVRFGSQKYVAGLAKCIENHANLPPIELQKWKQIKASVGQLWDPRRGGSYQ 176

Query: 141 --SADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
             +   +  + +QY A DV  L +L   + +KL++
Sbjct: 177 VFNQRPIRTDIIQYCAQDVTILPSLWNVYHQKLRQ 211


>gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group]
 gi|113623082|dbj|BAF23027.1| Os08g0175600 [Oryza sativa Japonica Group]
          Length = 570

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 48/173 (27%), Gaps = 47/173 (27%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G+           D   +K++H   FD  V+    G++V      
Sbjct: 317 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDSHVIEN-CGIKVAGFHAD 375

Query: 103 TKIASRL---TRTYTNQHGLKDNL---------------------KELLG---------- 128
           T   +RL   +R     + L+                        K + G          
Sbjct: 376 TMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSE 435

Query: 129 -----INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                I   K  Q  D    +L    + Y++ D +    L      KL+    
Sbjct: 436 GKTISIEPVKKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAKEW 482


>gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 1035

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 48/173 (27%), Gaps = 47/173 (27%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G+           D   +K++H   FD  V+    G++V      
Sbjct: 317 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDSHVIEN-CGIKVAGFHAD 375

Query: 103 TKIASRL---TRTYTNQHGLKDNL---------------------KELLG---------- 128
           T   +RL   +R     + L+                        K + G          
Sbjct: 376 TMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSE 435

Query: 129 -----INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                I   K  Q  D    +L    + Y++ D +    L      KL+    
Sbjct: 436 GKTISIEPVKKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAKEW 482


>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
 gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
           +D+   +  +     +  +L DE+  KI H  + +I   +    + ++ V F T I   L
Sbjct: 361 IDVRDFSDKEALLIQIKEVLEDEEIHKIGHDIKHEIRHFYVH-DIEMKNVTFDTMIGEYL 419

Query: 110 TRTYTNQHGLKDNLKELLGINI 131
                + + LKD   + +G  +
Sbjct: 420 IDPAKSSYALKDLAAQYIGQEV 441


>gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group]
          Length = 982

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 48/173 (27%), Gaps = 47/173 (27%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G+           D   +K++H   FD  V+    G++V      
Sbjct: 264 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDSHVIEN-CGIKVAGFHAD 322

Query: 103 TKIASRL---TRTYTNQHGLKDNL---------------------KELLG---------- 128
           T   +RL   +R     + L+                        K + G          
Sbjct: 323 TMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSE 382

Query: 129 -----INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                I   K  Q  D    +L    + Y++ D +    L      KL+    
Sbjct: 383 GKTISIEPVKKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAKEW 429


>gi|212539151|ref|XP_002149731.1| exonuclease, putative [Penicillium marneffei ATCC 18224]
 gi|210069473|gb|EEA23564.1| exonuclease, putative [Penicillium marneffei ATCC 18224]
          Length = 721

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 39/149 (26%)

Query: 21  DAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ----------------- 60
           + +A+D E   T G      R+ +V     DG V + ++                     
Sbjct: 337 EVLALDCEMCITEGGKSELTRISLV---NWDGEVVLDKLVKPDLPIINYLTQFSGITKEM 393

Query: 61  ---------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110
                         L+ +L   +   + H    D+A L         P +  T I     
Sbjct: 394 LDPVTTTLADIQRELLELLT-PRTVLVGHSLNSDLAALK-----LTHPFIIDTAIIYPHP 447

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
           R    +  LK   ++ LG  I K Q   D
Sbjct: 448 RGPPLKSSLKWLCQKYLGKEIQKGQTGHD 476


>gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
 gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
          Length = 928

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 6   VHEGDIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP 64
           + E  + A  A       ++ DTET  L P + R+  V  S   G    + +      AP
Sbjct: 335 LTEAQLDAWLARLMAAKVVSFDTETTSLDPMQARIVGVSFSVEAGHAAYLPLEHHYAGAP 394

Query: 65  ----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTY 113
                      L   L D  ++K     ++D  VL    G+ +  +   + +AS +  ++
Sbjct: 395 QQLPLEAALAKLKPWLEDASKKKCGQNLKYDCHVLANH-GIALAGIADDSMLASYVLESH 453

Query: 114 TNQHGLKDNLKELLGIN 130
             +H + D  +  LG N
Sbjct: 454 -QRHNMDDLARRHLGEN 469


>gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
 gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
          Length = 879

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 22/198 (11%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK- 74
           +      IA DTET  +  +  ++        +     + +          V +   +K 
Sbjct: 312 SLEQESIIAFDTETTSIDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQSAKKA 371

Query: 75  REKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            E IF      H  ++D  ++   F +   +    T I + L +  + +  + D    L 
Sbjct: 372 IELIFKHFIIGHNLKYDFKIIENNFKLSLPQKYADTMILAWL-KNPSLRVNMDDLALRLF 430

Query: 128 GIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
                     + K +   ++++ +L     +YAA D        L F + L+     DLA
Sbjct: 431 NYETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLEPH-LLDLA 485

Query: 181 TS-CCNFLMDRAELDLLG 197
            +   +F+     ++  G
Sbjct: 486 KNYEFDFIKIIMMMEENG 503


>gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
 gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
          Length = 912

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 12/138 (8%)

Query: 4   IRVHEGDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I + +  +    A     + +++DTET  L P   +L  +      G    I +A     
Sbjct: 317 IILTDAQLGDWLAQCESAELVSIDTETTSLNPMEAKLVGLSFCMELGQAAYIPLAHHYPG 376

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
            P+          L   L  +++ KI    ++D  V      +    V  T + S +  +
Sbjct: 377 VPSQLNREQVLQRLKPWLESDEKLKIGQNLKYDRHVFANHGVMLNGIVHDTLLQSYVLES 436

Query: 113 YTNQHGLKDNLKELLGIN 130
           +   H L       LGI 
Sbjct: 437 HL-SHDLDSLASRHLGIQ 453


>gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12]
 gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 923

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 59/193 (30%), Gaps = 26/193 (13%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI   E         R     A+DTET  L P +  L  +  +   G    +        
Sbjct: 325 TIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGLSFASEVGCAAYLPFGHDYPG 384

Query: 63  AP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           AP           L  +L D    K+  +G++D+ VL     V       T + S +  +
Sbjct: 385 APVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTS 444

Query: 113 YTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLS----DEQLQYAASDVVHLH 161
              +H +    +  LG         + K  +         S     E  QYAA D     
Sbjct: 445 GHARHDMDTLARRHLGYETMKYVDLVGKGAKQI-----PFSHVGVQEATQYAAEDADITL 499

Query: 162 ALRLQFTEKLQRL 174
            L      KL   
Sbjct: 500 RLHCVLAPKLLAE 512


>gi|9964623|ref|NP_064753.1| RP DNA pol [Roseobacter phage SIO1]
 gi|9944314|gb|AAG02598.1|AF189021_17 RP DNA pol [Roseobacter phage SIO1]
          Length = 580

 Score = 44.6 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 14/125 (11%)

Query: 62  NAPNLVGMLVDEKREKIFHYG-RFDIAVLFYTFG--VRVRPVFCTKIASRLT-RTYTNQH 117
           +A      L  +    I H    FDI  +   +G  + ++ V  T + SRL   T    H
Sbjct: 35  DAETFKR-LAKQVTLWIGHNVIGFDIPQIKKLWGYGIPLKDVADTLVMSRLLDPTRKGGH 93

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
            L           I       D+S    + E L Y   DV     + LQ  E+L   G++
Sbjct: 94  SLDALSG---NEKID----FHDFST--YTPEMLAYCKQDVAINEKVYLQLKEELSNFGKA 144

Query: 178 DLATS 182
            +   
Sbjct: 145 SIQLE 149


>gi|325142622|gb|EGC65013.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           961-5945]
          Length = 405

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 47/157 (29%), Gaps = 38/157 (24%)

Query: 62  NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPVFCTKIASRLTRT 112
           +AP    +  +     K    + H  RFD   L + F   G+    PV C+   SR    
Sbjct: 25  DAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPVLCSVQLSRCLYP 84

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
              +H L   ++  LGI +    +                A +DV    AL       L 
Sbjct: 85  QFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS---ALCDYLEYSLS 124

Query: 173 RLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
             G       C            L +R    L G  +
Sbjct: 125 EHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 161


>gi|307136028|gb|ADN33882.1| 3'-5' exonuclease [Cucumis melo subsp. melo]
          Length = 209

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 10/155 (6%)

Query: 23  IAVDTE-TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHY 81
           + +D E         + +  +QL  G     I+++    +   +L   L +E    +   
Sbjct: 56  VGLDIEWRPNNRSYDNPVATLQLCIG-RRCLILQLLHIPEIPKSLFEFLENESFTFVGVG 114

Query: 82  GRFDIAVLFYTFGVRVRP---VFCTKIASRLT-RTYTNQHGLKDNLKELLGINISK--AQ 135
              D   L   +G++V     +    +A  +T R      GLK   KE+LG  I K  + 
Sbjct: 115 IDEDAEKLNCDYGLKVGKRMDLRD--LAESVTGRGELKNAGLKRLGKEVLGKEIHKPKSV 172

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
             S W  + L+  Q++YA  D      +      +
Sbjct: 173 TMSRWDQEWLTLNQVKYACIDAFFSFEIGRFLQSE 207


>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
 gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
          Length = 937

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 62/189 (32%), Gaps = 26/189 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-------- 68
              VD + +DTET  + P   +L  + LS   G    I +A    +   L          
Sbjct: 351 LDEVDLVCIDTETTSIDPMLAQLVGISLSVKPGEACYIPVAHRGPDVAGLDAAAQLSRDT 410

Query: 69  -------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLK 120
                   L DE R+K+  + ++D  V      + +R +   T + S +  ++ N HG+ 
Sbjct: 411 VLARMKLWLEDESRKKVGQHLKYDAHVFANH-DIALRGIEHDTMLESYVLESHRN-HGMD 468

Query: 121 DNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
              + +L +          K      +    L      YAA D      L      K+  
Sbjct: 469 ALAERVLHLKTITYEAVCGKGASQIGFDEVPLDRA-TAYAAEDADVTLRLHRTLFPKVAE 527

Query: 174 LGRSDLATS 182
             +      
Sbjct: 528 DDKLRYVYE 536


>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1440

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 32/147 (21%)

Query: 22  AIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDIIRIAAGQKN-- 62
            I  D ET GL    D    L  V++  G+                   I +     +  
Sbjct: 425 YIVFDVETTGLSAVYDTIIELAAVKIHDGEIIDRFESFANPHHPLSATTIDLTGITDDDV 484

Query: 63  --APNLVGMLV-----DEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLT 110
             AP +  +L       +    + H   FD+  L      Y  G    PV  T   +R  
Sbjct: 485 RNAPEVEEVLRRFKEWSQNDILVAHNASFDMGFLNTGYKRYGLGKAANPVIDTLELARFL 544

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQS 137
                 H L    K+   + +++  ++
Sbjct: 545 LPEMKNHRLNTLAKKF-DVELTQHHRA 570


>gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413]
 gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413]
          Length = 977

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 53/171 (30%), Gaps = 25/171 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAG-------QKNAPNLVGML 70
            +A DTET GL PR     +V +             I +A               L  +L
Sbjct: 387 PVAWDTETSGLEPRDA--ALVGIGCCWGTEADASAYIPLAHTKGENLSQDIVLTALRPIL 444

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                 K F   +FD  V           VF   +AS +    T  H L D  +  LG+ 
Sbjct: 445 ESADYPKTFQNAKFDRLVFLVQGINLTGVVFDPMLASYVLNPDT-SHNLTDLTQRYLGLT 503

Query: 131 I-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           I        K +  +D +          Y    V     L  +  E+L + 
Sbjct: 504 IQNYVDLVPKGKTIADINI----SAVANYCCLQVYATFQLVAKLREELAKT 550


>gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
 gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
          Length = 909

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 9   GDIPAECAA-RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN-- 65
             +    AA       A DTET  L   +  +  V L+        I +A     AP   
Sbjct: 318 SQLDEWLAAIEEAPLFAFDTETTSLDYMQAEIVGVALAVATDRAAYIPLAHDYPGAPEQL 377

Query: 66  --------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116
                   L  +L D +R K+    ++D  VL    G+ +R +   + + S +     ++
Sbjct: 378 DRDLVLTRLRPLLEDSQRAKVGQNLKYDANVLANY-GIALRGIAHDSMLESYVLDATGSR 436

Query: 117 HGLKDNLKELLGIN 130
           H +     + LG  
Sbjct: 437 HDMDTLALKYLGEK 450


>gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
 gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
          Length = 933

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 44  LSPGDGTVD-IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA----VLFYTFGVRVR 98
           L+  DG    I  +     +   L   L D  R K+ H    D+      L         
Sbjct: 372 LAGADGVAAWIDPLTLEPADEQALAAWLADPDRPKVAH----DVKGPSHALLARGWTLAG 427

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            V  T +A+ L R     + L D     L   +
Sbjct: 428 VVLDTALAAYLCRPDQRSYDLADLAVRHLKREL 460


>gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2]
 gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2]
          Length = 608

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 3   TIRVHEGDIP--AECAARYVDAIAVDTETLGLMPRRDR--LCIVQLSPGDGTVDIIRIAA 58
            +  HE D+          +  + +DTET  L   +    + ++Q         ++ +  
Sbjct: 16  NVVEHEDDLDGFESFIRSSLRILGLDTETTDLGIYKPDFGIRLIQFGNP-WESWVLPVER 74

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLT--RT 112
           G       V  L   +R  + H   FD+ V+  T GV +  ++     TKI S L   R 
Sbjct: 75  GGVFVGAAVTALQKVQRF-VIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRA 133

Query: 113 YTNQHGLKDNLKELLGINIS 132
           Y    G    L+EL    I 
Sbjct: 134 YKEG-GTGHKLEELTKFYID 152


>gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421]
 gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421]
          Length = 938

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 56/182 (30%), Gaps = 27/182 (14%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---KNAPNLVGML 70
           +        +A DTET  L PR  RL  +  +   G    + +A  Q        +V  L
Sbjct: 363 DALLAQDGLVAWDTETNNLDPRHARLVGIGCAWEPGVAYYLPLAHQQGSNLETDAVVAAL 422

Query: 71  V----DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
                D +R K+    ++D  VL           F   +AS +      +H L    +  
Sbjct: 423 TPYWQDRERPKVLQNAKYDWLVLRNYGVALAGIAFDPMLASYVLDPEG-KHNLMTLAQNH 481

Query: 127 LGINI-------SKAQQSSDWSADDLSDEQL----QYAASDVVHLHALRLQFTEKLQRLG 175
           L I +        K Q         +   ++    +Y   D      L      KL    
Sbjct: 482 LQITMGSYEALVPKGQT--------IDAVEIAAVSRYCGEDAAVTLRLVPVLQAKLDEDP 533

Query: 176 RS 177
           R 
Sbjct: 534 RL 535


>gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102]
 gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102]
          Length = 463

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 61/212 (28%), Gaps = 50/212 (23%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRL---CIV-----------QL-----SPGDGTV 51
           +    +      + VD ET G    +DR+    +V           QL     S  +   
Sbjct: 10  LSEAFSRLGRPVVVVDLETTGGNFYQDRITEVALVRFEQGRATHYEQLVNPCRSIPEFVA 69

Query: 52  DIIRI-AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPVF 101
            +  I     KNAP    +  D     +    + H  RFD   L + F         P  
Sbjct: 70  RLTGIHDETVKNAPVFADIAADLLPLLQGAVVVAHNSRFDYTFLRHEFARIHTDFAAPSL 129

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
           CT   SR       +H L   ++   GI  +   +                A +DVV   
Sbjct: 130 CTVQLSRRLYPEFYKHSLDSIIER-TGIQTANRHR----------------AMTDVV--- 169

Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
           AL       L               LM+   L
Sbjct: 170 ALCDYLELSLTEKNHQQW-DEHVRVLMNPKML 200


>gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
 gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
          Length = 847

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 22/198 (11%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK- 74
           +      IA DTET  +  +  ++        +     + +          V +   +K 
Sbjct: 280 SLEQESIIAFDTETTSIDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQSAKKA 339

Query: 75  REKIF------HYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            E IF      H  ++D  ++   F +   +    T I + L +  + +  + D    L 
Sbjct: 340 IELIFKHFIIGHNLKYDFKIIENNFKLSLPQKYADTMILAWL-KNPSLRVNMDDLALRLF 398

Query: 128 GIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
                     + K +   ++++ +L     +YAA D        L F + L+     DLA
Sbjct: 399 NYETLHFESLVKKGE---NFASVELEKA-CKYAAEDAYITLRFYLYFLKNLEPH-LLDLA 453

Query: 181 TS-CCNFLMDRAELDLLG 197
            +   +F+     ++  G
Sbjct: 454 KNYEFDFIKIIMMMEENG 471


>gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
           (dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 960

 Score = 44.6 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 38/155 (24%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGT----VDIIRI------------ 56
              ++ +A+D ET GL    D +  +Q++     G+      V +++             
Sbjct: 19  LEQLEFVAIDIETTGLNSEWDEI--IQIAGMRFKGEEVVNQFVSLVKPKGKVPKFIEHLT 76

Query: 57  ---AAGQKNAPNLVGMLVD------EKREKIFHYGRFDIAVLFY----TFGVRVRPV-FC 102
                  K AP +  +L D      +    + H   FD   L        G  +  + + 
Sbjct: 77  HISPQELKTAPPIKEVLKDFCNFIGDSIL-VGHNIGFDFNFLNQFIVDNGGFPISNMHWD 135

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           T    R+   +T  H L   +    GI +  A Q+
Sbjct: 136 TAEIGRIYLPFTTDHKLSTLVS-FFGIELMNAHQA 169


>gi|323452315|gb|EGB08189.1| hypothetical protein AURANDRAFT_71632 [Aureococcus anophagefferens]
          Length = 1677

 Score = 44.2 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 25/149 (16%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD-------E 73
             +AVD E  G     +   ++QL+     V            P +  +L D        
Sbjct: 39  GQVAVDCE-WGANAAHEGASLLQLATRGLVVL--VDLLALPTTPAVHKLLADVADLAFAS 95

Query: 74  KREKIFHYGRF--DIAVLFYT-------FGVRVRPVFCTKIASRLTRTY------TNQHG 118
           +   +  +     D+  L          F  RV      ++A      +         +G
Sbjct: 96  RHVVVLGFDGEANDLPHLRAAWRRRGLVFPARVTRYVDVRVACARAGGWEADYDELRGYG 155

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSD 147
           L +   + LG  + K+ +  DW    L++
Sbjct: 156 LAECAAKFLGRRLDKSPRDLDWRRRPLTE 184


>gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 1450

 Score = 44.2 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 49/160 (30%), Gaps = 32/160 (20%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRL-----------CIV----QL-----SPGDGT 50
           +  +        +  D ETLG      ++            IV    QL     S     
Sbjct: 413 LQEDQELEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDRFSQLINPGQSIPQNI 472

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPV 100
           VD+  I     +N P L  +L +          + H   FDI  L             P 
Sbjct: 473 VDVTNITDSMVQNEPKLEEVLPNFLEFIRGSILVAHNADFDIGYLKQQCKKYGYSDFNPA 532

Query: 101 F-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           F  T   ++       Q GL    K+ LG+ +    ++ D
Sbjct: 533 FIDTLQMAKDLYPELKQFGLGPLNKK-LGLYLENHHRAVD 571


>gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202]
 gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202]
          Length = 931

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K  H  +  +  L             T++A
Sbjct: 395 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 454

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 455 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 487


>gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 468

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 40/173 (23%)

Query: 3   TIRVHEGDIPAECAARYVDAIA---VDTETLGLMPRRDRLCIVQLS----------PGDG 49
              +   D PA      + A++    DTET GL+P +D   +VQ+           PG+ 
Sbjct: 254 DFDLLTHDAPAAVEDTPLSALSYTVFDTETTGLLPHKDE--VVQIGAVRVLNGRIVPGEV 311

Query: 50  TVDIIRIAAGQKNAPNLVGMLVD------EKR--------------EKIFHYGRFDIAVL 89
              ++        + + V  + D                         + H   FD+A L
Sbjct: 312 LDLLVDPGIPIPASSSRVHKVTDAMVAGKPDIGEAGRRFHRFAKGSVIVAHNAPFDMAFL 371

Query: 90  FYTFGVRV----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
                        P+  T + S +    +  H L    +  LG+ I +A + +
Sbjct: 372 RRHRDRMGVEWDHPILDTVLLSAVLFGASETHTLDALCQR-LGVEIPQALRHT 423


>gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 750

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 34/182 (18%)

Query: 21  DAIAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKN---------APNLV 67
             +A DTET  L PR   L    C      G    D+  I                  L 
Sbjct: 173 KPVAWDTETTSLEPRDANLVGIGC----CWGSELSDLAYIPLNHTQGEMLNIEQVLEALR 228

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
            +L  E+  K     +FD  ++  + G+ ++  VF T +AS +    +  H L D     
Sbjct: 229 PILESEEYPKTLQNAKFD-RLILRSQGITLKGVVFDTMLASYIINPES-SHNLTDLSLRY 286

Query: 127 L----------GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           L             + K +  +D   + ++     Y   DV     +  +  + L+ L R
Sbjct: 287 LPDLGIVAQSYSQLVPKGKTIADLDINTVA----NYCGLDVFTTFQITQKMQDILKDLPR 342

Query: 177 SD 178
            +
Sbjct: 343 LN 344


>gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
 gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
          Length = 915

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 10/128 (7%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLV 67
           GD+    AAR    + VD    G     D    + L+   G      ++     +   L 
Sbjct: 331 GDLGPWLAARAGRPLGVDVRGSGAPAGGDAWG-IALADASGQAAAFDLSQVDPADENALA 389

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQHGLKDNL 123
             L D  + K+ H  +      ++    R  P+    F T++A+ L +     + L D  
Sbjct: 390 AWLADPAQPKVVHASKE----AWHALAGRGMPLAGVTFDTELAAYLCQPDRRAYDLGDLA 445

Query: 124 KELLGINI 131
              L   +
Sbjct: 446 IGYLRREL 453


>gi|298705893|emb|CBJ34189.1| expressed unknown protein [Ectocarpus siliculosus]
          Length = 333

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 139 DWSADDLSDEQLQYAASDVVHLHALR 164
           DW    LS+E+L YA  D  +L  L 
Sbjct: 54  DWRERPLSEEKLVYARCDSHYLIPLW 79


>gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B]
          Length = 862

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 23/136 (16%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLK 124
           L  +  +   EKI H  +  +  +     + +   VF T+IA+ L  +   ++ LK   +
Sbjct: 367 LKKLFENTS-EKIIHNAKN-LFTVLSKLDIDINNFVFDTEIAAYLIESSDKEYTLKTLFE 424

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD-LATSC 183
             L       +   D     +S E        + +L  L  +  EK++ L   D L    
Sbjct: 425 TYL------HETYQD-----ISQE--------ISNLSNLYQRLKEKIKELQMEDLLYKIE 465

Query: 184 CNFLMDRAELDLLGWE 199
              +   A+++ +G++
Sbjct: 466 LPLVKVLADMEKVGFK 481


>gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 907

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 19/139 (13%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                 + +       L D  + K+ H  +  + V              T +A+ L +  
Sbjct: 377 DPSQLDEADENAFATWLADPAKPKVLHNAKGVMRVFAEHGWTVEGVSMDTALAAYLVKPG 436

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY-----AASDVVH-----LHAL 163
                L     E LG  +  A  +         D QL +     A +D +      +  L
Sbjct: 437 RRSFALDALSLEYLGRELEPAATA---------DGQLAFGADEGAEADALMVQARAILDL 487

Query: 164 RLQFTEKLQRLGRSDLATS 182
              F E+L+ +G +DL   
Sbjct: 488 GEAFGERLKEVGSADLLRD 506


>gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
 gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1]
          Length = 892

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K  H  +  +  L             T++A
Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 415

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 448


>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
 gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
          Length = 1438

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 39/162 (24%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD---------IIRIAA 58
           PA+        +  D ET GL P +D++  +++      G   +D         I     
Sbjct: 402 PADRLIEDEIYVVFDIETTGLDPYKDKI--IEIGAIKLKGKEIIDEFSVFINPEIDIPEE 459

Query: 59  G-----------------QKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR 98
                             +   P  +    D     + H  +FD+  +       G+   
Sbjct: 460 ITALTNITNDMVKDAEKVETVLPKFLEFCKDTTV--VAHNAKFDVGFINQKAKNLGLEYS 517

Query: 99  P-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           P V  T   +R+      + GLK  +     + +    ++ D
Sbjct: 518 PSVIDTLHWARILLPEQKRFGLKY-IANYFNVVLDNHHRAVD 558


>gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
          Length = 890

 Score = 44.2 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K  H  +  +  L             T++A
Sbjct: 354 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 413

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + +A+++SD
Sbjct: 414 SYLLHPDRRAHKFDDAVRTHLNVALGEAEENSD 446


>gi|313668201|ref|YP_004048485.1| DNA polymerase III subunit [Neisseria lactamica ST-640]
 gi|313005663|emb|CBN87106.1| putative DNA polymerase III subunit [Neisseria lactamica 020-06]
          Length = 470

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 65/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRD---RLCIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     D    + +V   Q         +       K  
Sbjct: 18  LLEKVFLRFGMPVAVVDLESTGGNLYEDMVTEVALVKFEQGRAERYEWLVNPQKPIPKFV 77

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 78  AELTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  +    C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSEHGVEEWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268]
 gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268]
          Length = 938

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 26/183 (14%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR------- 75
           ++ DTET  +  +  ++     +  +     + +A     AP    +  D  +       
Sbjct: 377 VSFDTETTSIDSKSAKIVGFSFAFNEERAYYVPLAHSYLGAP--AQISSDAAKAAIDSLF 434

Query: 76  --EKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGIN-- 130
               +    ++D  ++   F +     F  T + + L     N  G+       LG    
Sbjct: 435 RGYVVGQNLKYDFEIVKNNFNIEPPARFADTMVLAWLLDP-ANAVGMDSISPRYLGYETV 493

Query: 131 -----ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                + K +  +   + +L    + YA+ D      L  +    L+      LA     
Sbjct: 494 HFGDVVKKGETFA---SVELDAATI-YASEDAWVTLRLYFKLKGLLEPA-LFKLAQELEF 548

Query: 185 NFL 187
            F+
Sbjct: 549 PFV 551


>gi|299741943|ref|XP_001832139.2| hypothetical protein CC1G_10721 [Coprinopsis cinerea okayama7#130]
 gi|298404955|gb|EAU89694.2| hypothetical protein CC1G_10721 [Coprinopsis cinerea okayama7#130]
          Length = 276

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 61/194 (31%), Gaps = 47/194 (24%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS-PGDGTVDIIRIAAGQKNA 63
             H   IP   +  +V  IAVD E + L     R+CIVQ+      TV ++ +      A
Sbjct: 72  TTHPAPIP-NASTTHVPTIAVDLEGVKLNRY-GRVCIVQMKLDVSNTVWLLDVTTLGSIA 129

Query: 64  PN--------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
            +        +  +L     +KI       + +       R                  N
Sbjct: 130 FDHADGEGRSVRWILQHPGIKKI-------LELAVRHSNKRPT---------------RN 167

Query: 116 QHGLKDNLKELL------------GINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
            +GL  +++  L            GI +          +    L +  + Y A DV  L 
Sbjct: 168 LNGLARSIESYLSPSPQWKQVKDAGIKLFSPPHGSYEVFEQRPLDERIMVYCAQDVTLLG 227

Query: 162 ALRLQFTEKLQRLG 175
            L +     L R G
Sbjct: 228 VLEVVLRRWLGRFG 241


>gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
           NRL30031/H210]
 gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
           NRL30031/H210]
          Length = 463

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 60/212 (28%), Gaps = 50/212 (23%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRL---CIV-----------QL-----SPGDGTV 51
           +    +      + VD ET G    +DR+    +V           QL     S  +   
Sbjct: 10  LSEAFSRLGRPVVVVDLETTGGNFYQDRITEVALVRFEQGRATHYEQLVNPCRSIPEFVA 69

Query: 52  DIIRI-AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPVF 101
            +  I     KNAP    +  D     +    + H  RFD   L + F         P  
Sbjct: 70  RLTGIHDETVKNAPVFADIAADLLPLLQGAVVVAHNSRFDYTFLRHEFARIHTDFAAPSL 129

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
           CT   SR       +H L   ++   GI  +   +                A +DV    
Sbjct: 130 CTVQLSRRLYPEFYKHSLDSIIER-TGIQTANRHR----------------AMTDV---A 169

Query: 162 ALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
           AL       L               LM+   L
Sbjct: 170 ALCDYLELSLAEKNHQQW-DEHVRVLMNPKML 200


>gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
 gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
          Length = 640

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 24/149 (16%)

Query: 42  VQLSPGDGTVDIIRIA-AGQKNAPN-------LVGMLVDEKREKIFHYGRFDIAVLFYTF 93
           +  S  +GT   + +     +NA N       L  +   +   K+ H   F+   L+   
Sbjct: 52  ISFSVSEGTAIYVPLKHRSGRNAENQAAIWDYLKLLFESKDVIKVAHNLAFESMFLYARG 111

Query: 94  GVRVRPVFCTKIASRLT-------RTYTNQHGLKDNLKELLGINISKAQQSSDWSAD--- 143
            V  +P + T  AS+LT       R+  +  GLK     L    +++    +        
Sbjct: 112 IVLQKPCYDTIAASQLTLKSKWEFRSLADS-GLKTLAPALCKAEMTEFSTVT--EGRFFD 168

Query: 144 ---DLSDEQLQYAASDVVHLHALRLQFTE 169
                 ++ ++YA +D  +   L   F +
Sbjct: 169 ELNPQDEKTVRYACADSDYTLRLYHVFNQ 197


>gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
 gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
          Length = 289

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 30/104 (28%), Gaps = 21/104 (20%)

Query: 78  IFHYGRFDIAVLFYTFGVR------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           I H G FDI  +   F            V  T + +R          L          NI
Sbjct: 99  IIHNGHFDIKFINNEFQKLNIPEISFERVIDTMLMARKL-YPRQPASLDSLCDRF---NI 154

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            K       S+  L       A +DV  L  +  +  +    LG
Sbjct: 155 DK-------SSRSLGHG----ALTDVKLLQLVYAKLLKDQDALG 187


>gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
 gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
          Length = 1033

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 35/210 (16%)

Query: 2   TTIRVHEGDIPAECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
            TIR  +        AR  DA  +AVD     + P +  LC + L+        I +   
Sbjct: 423 KTIRTLDE--LHGWIARIHDAGFVAVDAIATSIDPMQAELCGIALALAPNDAAYIPLGHR 480

Query: 60  QK----------NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           Q            AP+          L  +L      KI    +F  AVL    G+ +R 
Sbjct: 481 QTGDGSGLFAAGLAPDQLGAREALDALKPLLESAGLAKIGFNIKF-TAVLLAQHGITLRN 539

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYA 153
           +   ++ S         HGL    +  LG  +    + +      +  +Q+      +YA
Sbjct: 540 IDDLQLMSYALDAGRGSHGLDALSESNLGHTLHALGELTGSGKAKIGFDQVPIERATEYA 599

Query: 154 --ASDVVHLHALRLQFTEKLQRLGRSDLAT 181
              +DV     L      +L       +  
Sbjct: 600 GERADVA--LRLWRVLKPRLVAERMMAVYE 627


>gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
 gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
          Length = 1463

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 42/164 (25%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDII-- 54
            I  +E D+           +  D ET GL     D   ++Q++      G+   +    
Sbjct: 410 PITYNEVDLD----LHEATYVVFDVETTGLSAIYND---LIQVAASKMHKGNIIAEFDEF 462

Query: 55  -----RIAAGQKN-----------APNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89
                 I+A   +           A  L  +L +     +    + H   FD+  +    
Sbjct: 463 INPGHPISAFTTDLTGITDDHVRNAKPLKQVLEEFQEFCQDAVLVAHNATFDVGFMNANY 522

Query: 90  -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
             +      +PV  T   +R       +HGL    K   G+ + 
Sbjct: 523 ERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|325136504|gb|EGC59108.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M0579]
          Length = 469

 Score = 44.2 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 17  LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 76

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 77  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 136

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 137 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 177

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 178 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 225


>gi|123975110|ref|XP_001330198.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
 gi|121896186|gb|EAY01345.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
          Length = 342

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 13/132 (9%)

Query: 35  RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEK-REKIFHYGRFDIAVLFYTF 93
            ++ + + Q +  D    +IR    Q +   L   L       K       D+  L   F
Sbjct: 78  FQNHISLFQFAT-DNCALLIRHLPPQPS-EILKEFLETHSFIGK---STGNDMRKLKDLF 132

Query: 94  GVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI----SKAQQSSDWSADDLSDE 148
           G  +   +    IAS     +       D +   +G  +     K    S+W    L+  
Sbjct: 133 GTDINVKIED--IASNRLCPHGFSRNFHDMVATFVGPPLFSIKDKTVTLSNWERPKLAII 190

Query: 149 QLQYAASDVVHL 160
           Q+ YAA DV+ L
Sbjct: 191 QVLYAAFDVIAL 202


>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
 gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
          Length = 1434

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 36/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS------------------PGDGTVDI 53
           P + + +    +  D ET GL  + D++  ++L+                  PG+   + 
Sbjct: 408 PQDRSLKDATYVVFDVETTGLSSQYDKI--IELAAVKVKDGEIIDKFERFSNPGERLNET 465

Query: 54  IRIAAGQK-----NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRVR 98
           I+   G       +AP +  +L D          + H   FD+  +   F     G    
Sbjct: 466 IKNLTGITDDMLIDAPPIESVLNDFKDFVGDAIYVAHNASFDMGFIDTGFDRLGYGPTEN 525

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
            V  T   SR   T   +HGL    K+  G+ +++  ++
Sbjct: 526 GVIDTLELSRTINTEMGKHGLNFLAKKY-GVELTQHHRA 563


>gi|145520595|ref|XP_001446153.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413630|emb|CAK78756.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1331

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 61/209 (29%)

Query: 20   VDAIAVDTETLGLMPRRDRLCIVQLS---PGDGTVDIIRIAAGQKNAPNLV--------- 67
            V+ I +D E      R+  + +VQ+         + I  +   +    +LV         
Sbjct: 842  VNYIGIDLE---GQLRKGDIWLVQMGVMVENLRIIFIFDLMKAKYLEADLVFHEQMLSVI 898

Query: 68   -GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT----------------------- 103
              +L DE   K+FH  + D   L +   +  R +  T                       
Sbjct: 899  RSILEDEGICKVFHDCKRDSQAL-HINQICPRNIADTSSTYIFLESLKLNDQEQKKVKKN 957

Query: 104  ---------KIAS----RLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDE 148
                     ++A+     +   Y   HG  +  +E+     +K    ++ D+ A   +  
Sbjct: 958  PVQISKEVLQVATPPINSVLTKYGAMHGGNELKEEM----HAKFNNCKADDFFARP-NPA 1012

Query: 149  QLQYAASDVVHLHALRLQFTEKLQRLGRS 177
             + Y+A DV  L  + LQ  E L    R 
Sbjct: 1013 FMYYSARDVEDLVQVYLQM-EMLALEYRY 1040


>gi|261392288|emb|CAX49811.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013]
          Length = 470

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 18  LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 78  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|325130506|gb|EGC53261.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis OX99.30304]
          Length = 470

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 18  LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 78  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|225437612|ref|XP_002271430.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 196

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 23/162 (14%)

Query: 23  IAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + +D E     L      +R+  +QL   D    I+++        +    L +     +
Sbjct: 43  VGLDCEWSPTFLSGTS--NRIATLQLCV-DTKCLILQLFYTDYIPQSFKNFLSNPAVTFV 99

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTK-------IASRL-TRTYTNQHGLKDNLKELLGIN 130
                  + V      +R       +       +A       +  + GLKD   +++G+ 
Sbjct: 100 G------VEVESDAMKLRDEYELDCQETSNIRALACSFWPNRWYRRPGLKDLAFQIVGLL 153

Query: 131 ISK--AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           + K     SS+W A  LS+EQ++YA+ D    + +  +  ++
Sbjct: 154 MQKPIHVCSSNWEARILSNEQVEYASIDAYASYRIGHRLLKE 195


>gi|125527632|gb|EAY75746.1| hypothetical protein OsI_03659 [Oryza sativa Indica Group]
          Length = 208

 Score = 44.2 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 15/145 (10%)

Query: 22  AIAVDTETLGLMPRR---DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
            + +D E             + ++Q+  G     I +I        +L   L D +   +
Sbjct: 53  VVGLDVE-WRPATYYHGPGPVAVLQICVG-RRCLIFQILHADYVPDSLFDFLADGRFTFV 110

Query: 79  ---FHYGRFDIAVLFYTFGVRVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISK 133
               H    D+A L     + V        +A++          GL+  ++E++G+   K
Sbjct: 111 GVGIHD---DVAKLRSHHELEVENAVDLRYLAAQTIGKPALRSAGLQGLVREVMGVWAPK 167

Query: 134 AQ--QSSDWSADDLSDEQLQYAASD 156
               + S W + +L+ EQ+ YA +D
Sbjct: 168 PYHVRVSAWDSWNLTPEQVMYACAD 192


>gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 903

 Score = 43.8 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 19/137 (13%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           +      + +       + D  R K+ H  +  + VL             T +A+ L + 
Sbjct: 372 LDPTQLEEADEQAFAAWVSDPARPKVLHNAKNVMRVLPEHGWQLEGVTMDTALAAYLVKP 431

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLHA 162
                 L     E LG  ++ A  +         D QL + A D             +  
Sbjct: 432 GRRSFALDALAVEYLGRELAPAAAA---------DGQLAFGADDRAEQDALMAQARAVLD 482

Query: 163 LRLQFTEKLQRLGRSDL 179
           L   FT +L+ +G ++L
Sbjct: 483 LGDAFTTRLKEVGAAEL 499


>gi|308389143|gb|ADO31463.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha710]
          Length = 461

 Score = 43.8 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 9   LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 69  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217


>gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08]
          Length = 920

 Score = 43.8 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105
           DG       A     +  +    L D +  K  H  +  +  L    G  V  +   T++
Sbjct: 384 DGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEAL-AGRGWEVAGLTCDTEL 442

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           AS L       H   D ++  L + + + +++SD
Sbjct: 443 ASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSD 476


>gi|195571747|ref|XP_002103864.1| GD20659 [Drosophila simulans]
 gi|194199791|gb|EDX13367.1| GD20659 [Drosophila simulans]
          Length = 541

 Score = 43.8 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 46/157 (29%)

Query: 18  RYVDAIAVDTE--TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKR 75
           +    +  D E  T+G   RR  + ++QLS   G   + R+   ++   +L  +L D+  
Sbjct: 75  QTFKVLGFDCEWITVGG-SRRP-VALLQLSSHRGLCALFRLCHMKQIPKDLRELLEDDDV 132

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    + D   L + +GV V                     L+               
Sbjct: 133 IKVGVAPQEDAMKLSHDYGVGVASTLD----------------LRFLC------------ 164

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                         L YAA+D +   A+  +    LQ
Sbjct: 165 --------------LDYAANDALMAVAIYQKLCRDLQ 187


>gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
 gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
          Length = 643

 Score = 43.8 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102
           S  DG V +I +A G+     ++  L DE  EK      F+   L    G R++P   +C
Sbjct: 38  SINDGEVKVIDLANGEIIPEEILSALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYC 97

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           T I S           L+  + E+L   + K 
Sbjct: 98  TMIWSAYLGLPL---SLEK-VGEVL--KLDKQ 123


>gi|225440185|ref|XP_002278268.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297741701|emb|CBI32833.3| unnamed protein product [Vitis vinifera]
          Length = 208

 Score = 43.8 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 21/157 (13%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
           ARY + +A+                +QL  G     I ++    +   +L+  L D    
Sbjct: 66  ARYTNPVAI----------------LQLCVG-RRCLIFQLLYAPEIPTSLIDFLGDTDYT 108

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKI-ASRLTRTY-TNQHGLKDNLKELLGINISK- 133
            +    + D   L     +RV  V    + A+R+  T      G+K   +E+LG  + K 
Sbjct: 109 FVGVGIQADSQKLLNDHNLRVGNVVDLAVLAARVLNTRELRNAGIKRLAREVLGREVEKP 168

Query: 134 -AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
                S W  D LSD Q+ YA  D      +      
Sbjct: 169 KHVARSRWDTDWLSDAQVHYACVDAFVSFEVGRCLNA 205


>gi|123417028|ref|XP_001305017.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
 gi|121886508|gb|EAX92087.1| 3'-5' exonuclease family protein [Trichomonas vaginalis G3]
          Length = 382

 Score = 43.8 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 25/165 (15%)

Query: 14  ECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG- 68
           E      D IA+D E                + Q++     + ++R  A       L   
Sbjct: 56  EWLDDGTDRIAIDLEWKPNFDKTRGEYP-ASVFQMATP-HKIVVLRHPADLPGNEILKKF 113

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKD-----N 122
           ++  +   K     + D   +   FG      +          R Y   +G         
Sbjct: 114 LMTHKFIAK---GCKTDRTKMQQKFGPDFSIDLLD------FERLYLIPNGFSSNFDAMV 164

Query: 123 LKELLGINI---SKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
           ++     +I    K    S+W AD L+ +Q+ YA  D   L    
Sbjct: 165 VEFYKNSSIEFKDKNVTCSNWQADVLTTQQVLYAGFDATALMKSY 209


>gi|304387160|ref|ZP_07369404.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
           13091]
 gi|304338764|gb|EFM04874.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
           13091]
 gi|325201850|gb|ADY97304.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis M01-240149]
          Length = 470

 Score = 43.8 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 18  LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 78  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
 gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           haemolyticus JCSC1435]
          Length = 1438

 Score = 43.8 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PTDRDLKEATYVVFDVETTGLSNQYDQIIELAAVKVKDGE-IIDKFERFSNPHEKLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 STAYIFIKMVQQMKELG 589


>gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
 gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
          Length = 1446

 Score = 43.8 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 42/164 (25%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRL-----------CIV----QLSPGDGTV--- 51
           DIP E      + +  D ET+GL      +            IV    QL     T+   
Sbjct: 412 DIPIE----EENFVVFDLETMGLNSHEHEIIEIGAVKLQGTRIVERYSQLVNPKKTIPKK 467

Query: 52  ----------DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----- 96
                      +  +   ++  P  +  + D     + H   FD+  +            
Sbjct: 468 IQELTNISQDMVDNMPTIEEVLPKFMEFVGDS--TMVAHNAPFDMGFIRRDVKKIMGYDY 525

Query: 97  -VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
               V  T   +R        +GLK+   ++LG+++    ++ D
Sbjct: 526 KPA-VIDTLQMARDLYPELKAYGLKNL-NKVLGLSLDNHHRAVD 567


>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
 gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
          Length = 926

 Score = 43.8 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGM 69
            + +A+DTET  L   R  +  +  S   G    I +A    +AP           L   
Sbjct: 349 AELVALDTETTSLDEMRAEIVGISFSVQPGEAAYIPLAHTGPDAPEQLPLGEVLARLKPW 408

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           L D +  K+  + ++D  V      + VR  V  T + S +   +   HGL    +   G
Sbjct: 409 LEDARYPKLGQHVKYDRHVFANH-DIDVRGYVHDTMLQSYVLEVHKP-HGLASLAERHTG 466


>gi|218768453|ref|YP_002342965.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491]
 gi|121052461|emb|CAM08798.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491]
          Length = 470

 Score = 43.8 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 18  LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 78  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
 gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
          Length = 469

 Score = 43.8 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 56/200 (28%), Gaps = 54/200 (27%)

Query: 13  AECAARYVD---AIAVDTETLGLMPRRDRLCIVQLSP----------GDGTVDIIRIAAG 59
           AE  +R +     +  DTET GL+P +D +  VQ+            G+    ++     
Sbjct: 265 AELDSRKLSNLSYVVFDTETTGLLPHKDEI--VQIGALRVVRNRIVAGEQFGTLVDPGTP 322

Query: 60  QKNAPNLVGMLVD------EKR--------------EKIFHYGRFDIAVLFYTFGVRV-- 97
              A   V  + D                         + H   FD+A L          
Sbjct: 323 IPAASTKVHGISDAMVQGAPDIGQAARAFHRFASDAVIVAHNAPFDMAFLRRHAKRAGVS 382

Query: 98  --RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155
             +PV  T + S +    +  H L    +  L + I                     A  
Sbjct: 383 WDQPVLDTVLLSAVLFGASQSHTLDALCER-LEVTI--------------PPALRHTAMG 427

Query: 156 DVVHLHALRLQFTEKLQRLG 175
           D      +  +    L+  G
Sbjct: 428 DAQATAEVFCKMLPMLEARG 447


>gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
 gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
          Length = 787

 Score = 43.8 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 38/203 (18%)

Query: 3   TIRVHEG-----DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI---I 54
           T+  HEG      +  +  A   + +A+DTET G+    DR   V LS      D+    
Sbjct: 125 TVNTHEGMEWVLSLFEDSYALGAE-VALDTETTGVEW-WDRT--VGLSLTFEFGDVEENF 180

Query: 55  RIAAGQKN----------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102
            I  G  +             L   L  +  + + H  +FD  +L    G+ +R    F 
Sbjct: 181 YIPYGHTSDHEQLTRGYVMKKLKPHLEKKGTKLVLHNSKFDSHMLLKD-GITIRNNIYFD 239

Query: 103 TKIASRLTRTYTNQHGLKDNLKEL---LGINISKAQQSSD-WSADD---LSDEQLQ---- 151
           T IA  +      + GLK    +     G    K+    + +S       S+E ++    
Sbjct: 240 TMIAHSVLNENDEK-GLKAIATKYGRFFGFE-DKSMSFGELFSNKPEAFYSNESMELCTF 297

Query: 152 YAASDVVHLHALRLQFTEKLQRL 174
           YA  D      L       +++ 
Sbjct: 298 YACKDTHLCLKLYKWQLSMMKKQ 320


>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
 gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
          Length = 1438

 Score = 43.8 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P     +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PTNRDLKDATYVVFDVETTGLSNQYDQIIELAAVKVYDGE-IIDKFERFSNPHQKLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLTDAPEIDEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERIGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMLQQMKELG 589


>gi|303281024|ref|XP_003059804.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458459|gb|EEH55756.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 306

 Score = 43.8 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 59/192 (30%), Gaps = 40/192 (20%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAGQKNAPNLVGM 69
               A     +AVD E     P      +VQ+      D    +   +  +  + NL  +
Sbjct: 121 DALWACAPSVVAVDVEGNQRTP----PVLVQVCARVGADTLCVLETPSVAEGLSENLRRL 176

Query: 70  LVDEKREKIFHYGRF--DIAVLFYTFGVR-VRPVFCTK-IASRLTRTYTNQHGLKDNLK- 124
           L D+   K+F  G    D      + GVR    V   + +A+ L      Q GL   L  
Sbjct: 177 LDDDAIVKVFCDGTSGAD----KRSLGVRSTCNVLDLEHVATELAGATGVQRGLARILNL 232

Query: 125 -------ELLGINISKA--------QQSSDWSADDLS------DEQLQYAASDVVHLHAL 163
                   +      K+        ++ +      LS       + ++YAA D       
Sbjct: 233 AWPDATVRVTKDAAEKSSVKFFAAIERGT---RPPLSGLHDIPPDVVRYAAMDAWCTLLA 289

Query: 164 RLQFTEKLQRLG 175
                   +R G
Sbjct: 290 HQGLQLLARREG 301


>gi|319410698|emb|CBY91078.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594]
          Length = 461

 Score = 43.8 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 9   LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 69  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217


>gi|325208398|gb|ADZ03850.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 469

 Score = 43.8 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 17  LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 76

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 77  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 136

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 137 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 177

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 178 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 225


>gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
          Length = 892

 Score = 43.8 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105
           DG       A     +  +    L D +  K  H  +  +  L    G  V  +   T++
Sbjct: 356 DGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEAL-AGRGWEVAGLTCDTEL 414

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           AS L       H   D ++  L + + + +++SD
Sbjct: 415 ASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSD 448


>gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
          Length = 883

 Score = 43.8 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105
           DG       A     +  +    L D +  K  H  +  +  L    G  V  +   T++
Sbjct: 347 DGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEAL-AGRGWEVAGLTCDTEL 405

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           AS L       H   D ++  L + + + +++SD
Sbjct: 406 ASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSD 439


>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana]
 gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana]
 gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana]
          Length = 1049

 Score = 43.8 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 50/176 (28%), Gaps = 41/176 (23%)

Query: 44  LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
              G   + +  +   G++          D    K++H   FD  ++    G+ +     
Sbjct: 325 FGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFHA 383

Query: 102 CTKIASRL---TRTYTNQHGLKDNLK--ELLGIN--------ISKAQQSSDWSADDLS-- 146
            T   +RL    R     + L+      ++LG          + K    + +    L   
Sbjct: 384 DTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKD 443

Query: 147 --------------------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
                               +  + Y+A D +    L    T+KLQ     D    
Sbjct: 444 GSEGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQ---LMDWHLD 496


>gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana]
          Length = 1067

 Score = 43.8 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 50/176 (28%), Gaps = 41/176 (23%)

Query: 44  LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
              G   + +  +   G++          D    K++H   FD  ++    G+ +     
Sbjct: 324 FGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFHA 382

Query: 102 CTKIASRL---TRTYTNQHGLKDNLK--ELLGIN--------ISKAQQSSDWSADDLS-- 146
            T   +RL    R     + L+      ++LG          + K    + +    L   
Sbjct: 383 DTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKD 442

Query: 147 --------------------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
                               +  + Y+A D +    L    T+KLQ     D    
Sbjct: 443 GSEGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQ---LMDWHLD 495


>gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA
           polymerase [Arabidopsis thaliana]
 gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana]
          Length = 1050

 Score = 43.8 bits (103), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 50/176 (28%), Gaps = 41/176 (23%)

Query: 44  LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
              G   + +  +   G++          D    K++H   FD  ++    G+ +     
Sbjct: 326 FGNGKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFHA 384

Query: 102 CTKIASRL---TRTYTNQHGLKDNLK--ELLGIN--------ISKAQQSSDWSADDLS-- 146
            T   +RL    R     + L+      ++LG          + K    + +    L   
Sbjct: 385 DTMHMARLWDSARRIKGGYSLEALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKD 444

Query: 147 --------------------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
                               +  + Y+A D +    L    T+KLQ     D    
Sbjct: 445 GSEGKIVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQ---LMDWHLD 497


>gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis]
          Length = 931

 Score = 43.8 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 57/191 (29%), Gaps = 49/191 (25%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVG 68
             D +A+DTET  L   R ++  +  S   G    I +     +AP           L  
Sbjct: 353 QADLVALDTETSALDAMRAQIVGLSFSVQPGEAAYIPLRHEGPDAPVQLPLEQVLARLKP 412

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELL 127
            L D +  K+  + ++D  V     G+ VR  V  T + S +   +   H L    +   
Sbjct: 413 WLEDARHAKLGQHIKYDRHVFANH-GIEVRGYVHDTMLQSYVLEVHKP-HNLASLAERHT 470

Query: 128 G---------------------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           G                     +++ KA                 YA  D      +   
Sbjct: 471 GRTGLNYEDLCGKGVHQIPFAQVSVDKAAT---------------YACEDSDQTLEVHQT 515

Query: 167 FTEKLQRLGRS 177
               LQ   R 
Sbjct: 516 LWPLLQANERL 526


>gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group]
          Length = 1032

 Score = 43.8 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 35/168 (20%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G+           D    K++H   FD  V+    G++V      
Sbjct: 322 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENY-GIKVAGFHAD 380

Query: 103 TKIASRL---TRTYTNQHGLKDNL--KELLGI---NISKAQQSS-----DW--------- 140
           T   +RL   +R     + L+       ++G+    + K  + S      W         
Sbjct: 381 TMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSA 440

Query: 141 -----------SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
                         D  +  + Y++ D +    L      KL++   +
Sbjct: 441 GKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYESLKSKLEKKHWT 488


>gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
 gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
          Length = 412

 Score = 43.8 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 7/89 (7%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRVR-PVFCTKIASR 108
           ++         P     + D     + H   FD+  L       G+R   PV  T I S 
Sbjct: 281 VVDKPPAGVVLPQFRSYVADA--VLVAHNAAFDLKFLRMREKDMGIRFDIPVLDTMILSN 338

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQS 137
                   H L D      GI I+    +
Sbjct: 339 FLDGPDAGHSLDDICDRY-GIEITDRHTA 366


>gi|325128513|gb|EGC51390.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis N1568]
          Length = 470

 Score = 43.8 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 18  LLEKVFLRFGMPVAVVDLESTGGNLYEDRVIEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 78  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS]
 gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS]
          Length = 937

 Score = 43.8 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 13/115 (11%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEK 74
           +DTET  L     ++  V  S   G    I +     +AP           L   L + +
Sbjct: 365 IDTETTSLDEMVAQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPIDEVLAKLKPWLENPE 424

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           ++K+  + ++D  V     G+ V      T + S +   +   HGL    +  LG
Sbjct: 425 KKKLGQHIKYDRHVFANH-GIEVEGYAHDTMLQSYVLEVHKP-HGLASLAERHLG 477


>gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group]
          Length = 1000

 Score = 43.8 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 35/168 (20%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G+           D    K++H   FD  V+    G++V      
Sbjct: 322 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENY-GIKVAGFHAD 380

Query: 103 TKIASRL---TRTYTNQHGLKDNL--KELLGI---NISKAQQSS-----DW--------- 140
           T   +RL   +R     + L+       ++G+    + K  + S      W         
Sbjct: 381 TMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSA 440

Query: 141 -----------SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
                         D  +  + Y++ D +    L      KL++   +
Sbjct: 441 GKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYESLKSKLEKKHWT 488


>gi|70916832|ref|XP_732646.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56503713|emb|CAH85281.1| hypothetical protein PC301478.00.0 [Plasmodium chabaudi chabaudi]
          Length = 179

 Score = 43.8 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN--APNLVGMLVDEKRE 76
            +    +D ET GL    +++ ++Q++  +  V I  +     N     L  +L DE   
Sbjct: 120 GIKYCGLDMETTGLEVFGEKIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIV 179


>gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group]
          Length = 1033

 Score = 43.4 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 50/181 (27%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G+           D   +K++H   FDI V+    G++V      
Sbjct: 321 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPFIKKVWHNYSFDIHVIEN-CGIKVAGFHAD 379

Query: 103 TKIASRL---TRTYTNQHGLKDNLKEL--------------------------------- 126
           T   +RL   +R     + L+    +                                  
Sbjct: 380 TMHLARLWDSSRRTDGGYSLEGLTNDYRVMDAVLKDIPKTGKVSMKTIFGRKKVRKDGSE 439

Query: 127 ---LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
              + I   +  Q  D    +L    + Y++ D +    L      KL+     +     
Sbjct: 440 GKTISIEPVEKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAK---EWIFDD 490

Query: 184 C 184
           C
Sbjct: 491 C 491


>gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
          Length = 976

 Score = 43.4 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 50/181 (27%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G+           D   +K++H   FDI V+    G++V      
Sbjct: 264 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPFIKKVWHNYSFDIHVIEN-CGIKVAGFHAD 322

Query: 103 TKIASRL---TRTYTNQHGLKDNLKEL--------------------------------- 126
           T   +RL   +R     + L+    +                                  
Sbjct: 323 TMHLARLWDSSRRTDGGYSLEGLTNDYRVMDAVLKDIPKTGKVSMKTIFGRKKVRKDGSE 382

Query: 127 ---LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
              + I   +  Q  D    +L    + Y++ D +    L      KL+     +     
Sbjct: 383 GKTISIEPVEKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAK---EWIFDD 433

Query: 184 C 184
           C
Sbjct: 434 C 434


>gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 1437

 Score = 43.4 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 29/145 (20%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTR 111
               +  P  V  + D     + H  RFD+  +              P   T   +RL  
Sbjct: 486 PDIAEELPKFVEFVGDA--VLVAHNARFDMGFIQANLKNIGMPELPNPSLDTLELARLLF 543

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                H L     +   +++    +                A  D V L  +     ++ 
Sbjct: 544 PSLKNHRLNTLADKF-KVSLENHHR----------------AIDDTVALMHILNHLLQEA 586

Query: 172 QRLGRSDLATSCCNFLMDRAELDLL 196
           +    + L     N L D    DL 
Sbjct: 587 EEQNLTQL-----NRLNDHVGKDLR 606


>gi|268686367|ref|ZP_06153229.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
 gi|268626651|gb|EEZ59051.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
          Length = 264

 Score = 43.4 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 18  LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 78  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLREQLYGLPD 226


>gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 1450

 Score = 43.4 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 32/160 (20%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRL-----------CIV----QL-----SPGDGT 50
           +  +        +  D ETLG      ++            IV    QL     S     
Sbjct: 413 LKEDQDLEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDRFSQLVNPGQSIPQNI 472

Query: 51  VDIIRIAAGQ-KNAPNLVGML---VD--EKREKIFHYGRFDIAVLFYTFGVR----VRPV 100
           VD+  I     +N PN+  +L   +D  E    + H   FDI  L      +      P 
Sbjct: 473 VDVTNITDSMVQNEPNIEEVLPKFLDFIEGSILVAHNADFDIGYLKQQCKQQGYSDFNPS 532

Query: 101 F-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           F  T   ++       Q GL    K+ LG+++    ++ D
Sbjct: 533 FIDTLQMAKDLYPELKQFGLGPLNKK-LGLSLENHHRAVD 571


>gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
          Length = 1450

 Score = 43.4 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 32/160 (20%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRL-----------CIV----QL-----SPGDGT 50
           +  +        +  D ETLG      ++            IV    QL     S     
Sbjct: 413 LKEDQDLEKASFVVYDLETLGFNSHEGKIIEIGAVKIVEKRIVDRFSQLVNPGQSIPQNI 472

Query: 51  VDIIRIAAGQ-KNAPNLVGML---VD--EKREKIFHYGRFDIAVLFYTFGVR----VRPV 100
           VD+  I     +N PN+  +L   +D  E    + H   FDI  L      +      P 
Sbjct: 473 VDVTNITDSMVQNEPNIEEVLPKFLDFIEGSILVAHNADFDIGYLKQQCKQQGYSDFNPS 532

Query: 101 F-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           F  T   ++       Q GL    K+ LG+++    ++ D
Sbjct: 533 FIDTLQMAKDLYPELKQFGLGPLNKK-LGLSLENHHRAVD 571


>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU121]
          Length = 1438

 Score = 43.4 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 50/196 (25%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PTDRDLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHEKLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
           I +     +    AP +  +L D          + H   FD+  +        FG     
Sbjct: 471 INLTHITDDMLTDAPEIEDVLTDFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTNG 530

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH 159
           V  T   SR   T   +HGL    K+  G+++++  +                A  D   
Sbjct: 531 VIDTLELSRTINTEYGKHGLNFLAKKY-GVDLTQHHR----------------AIYDTEA 573

Query: 160 LHALRLQFTEKLQRLG 175
              + ++  ++++ LG
Sbjct: 574 TAYIFIKMVQQMKELG 589


>gi|298205234|emb|CBI17293.3| unnamed protein product [Vitis vinifera]
          Length = 301

 Score = 43.4 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 26/120 (21%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKR-EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
             D   I  G   A + V +  D     K       D+  L Y             +A++
Sbjct: 174 AADPTSIKVGVGIANDAVKVFKDHSVSVK-------DLEDLSY-------------LANQ 213

Query: 109 LTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDV---VHLHAL 163
                  + GL    + L+   + K    +  +W AD LS  QL+YAA+D     +L+ +
Sbjct: 214 KLGGDAKKWGLGSLTEMLISKQLLKPNKIRLGNWEADVLSKAQLEYAATDAFASWYLYEV 273


>gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 288

 Score = 43.4 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 34/115 (29%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD----------------IIRIAAGQK 61
           + +A+D ET GL P  D++  ++++     DG +                 I RI     
Sbjct: 114 EFVAIDLETTGLNPINDKI--IEVAAVKFKDGQIIDRFTTLINPEIHIPSGITRINHITD 171

Query: 62  ----NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYT---FGVRVRPVF-CT 103
               +AP L  ++       E    + H   FD+  L +    FG  +   +  T
Sbjct: 172 EMVKDAPVLAEVMPCLVNFIEDSILVMHNASFDLKFLKHHAMNFGHDINNSYIDT 226


>gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1402

 Score = 43.4 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 54/194 (27%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLS-----------------PGDGTV------------D 52
            + VD ET G   +RD++  +++                    +G +            D
Sbjct: 390 FVVVDIETTGFDSQRDKI--IEIGAVKIENGQIIERFSTFVDPEGKIPVRISELTGIYQD 447

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASR 108
           ++  A    +A              + H  +FDI  L   ++  G+        T   SR
Sbjct: 448 MVDKAPKLNDAILEFEKFASGSIL-VAHNAQFDIGFLKKAYHECGIIFDYTYIDTLELSR 506

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
              T  + H L   + E L + + K    +D               SD      +     
Sbjct: 507 RLLTDLSSHKLNK-VAEFLNVEL-KHHHRAD---------------SDAETTAGIFTSLL 549

Query: 169 EKLQRLGRSDLATS 182
           EKL+  G       
Sbjct: 550 EKLKLRG-YKWLKE 562


>gi|269214643|ref|ZP_05986966.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           lactamica ATCC 23970]
 gi|269209302|gb|EEZ75757.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           lactamica ATCC 23970]
          Length = 470

 Score = 43.4 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 68/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 18  LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
            ++  I+ G   +AP    +  +     K    I H  RFD   L + F   G+    P 
Sbjct: 78  AELTGISDGMVADAPVFAEIAGELFSVLKGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1047

 Score = 43.4 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 56/186 (30%), Gaps = 42/186 (22%)

Query: 47  GDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTK 104
           G   + +  +   G++          D    K++H   FD  ++    G+ +      T 
Sbjct: 324 GKSCIWVDVLGENGREVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFHADTM 382

Query: 105 IASRL---TRTYTNQHGLKDNLK--ELLGIN--------ISKAQQSSDWSADDLS----- 146
             +RL    R     + L+      ++LG          + K    + +    L      
Sbjct: 383 HMARLWDSARRIEGGYSLEALTSDPKVLGGTQTKEEADFLGKISMKTIFGKRKLKKDGSE 442

Query: 147 -----------------DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMD 189
                            +  + Y+A D +    L    T+KLQ     D        +++
Sbjct: 443 GKMVVIPPVEELQREDREAWISYSALDAISTLKLYESMTKKLQ---MMDW-RLDGKPVLE 498

Query: 190 RAELDL 195
           R  LD 
Sbjct: 499 RTMLDF 504


>gi|124513960|ref|XP_001350336.1| exonuclease, putative [Plasmodium falciparum 3D7]
 gi|23615753|emb|CAD52745.1| exonuclease, putative [Plasmodium falciparum 3D7]
          Length = 713

 Score = 43.4 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 136 QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           Q ++W+   L+ EQ+ YA  D   L  +     EK
Sbjct: 650 QLANWNIRPLNQEQIIYACIDSYVLIKIEEMLIEK 684


>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1151

 Score = 43.4 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 39/152 (25%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDI---IRIAA----------- 58
            +  D ET G  P  D++  +++           G+ +  +   I I             
Sbjct: 117 YVVFDIETTGFDPFNDKI--IEIGAVKMRGREIIGEFSEFVNPEIPIPPKITELTTITDE 174

Query: 59  -------GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIAS 107
                   +   P  +    D     + H  +FD+  +       G+   P V  T   +
Sbjct: 175 MVANAEKIETVLPRFLEFCTDTTV--VAHNAKFDVGFIKQKTIEQGLEYSPSVIDTLPLA 232

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           R     +  +GL + +K   GI +    ++ D
Sbjct: 233 RTLLPDSRGYGLANLVK-YFGITLETHHRAVD 263


>gi|242048942|ref|XP_002462215.1| hypothetical protein SORBIDRAFT_02g021856 [Sorghum bicolor]
 gi|241925592|gb|EER98736.1| hypothetical protein SORBIDRAFT_02g021856 [Sorghum bicolor]
          Length = 335

 Score = 43.4 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHY 81
           + +DTE       + ++ ++Q+   +    + ++  AG     ++    V E    +   
Sbjct: 135 VGLDTEHA-EYEGKKKIALIQICV-NTRCLLFQVGVAGGCIPDDIKSFFVRENHVFVGVA 192

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLT--RTYTNQHGLKDNLKELLGINISK---AQQ 136
              D+ +L     + +      +          + N   L     ELLG+   K     +
Sbjct: 193 IANDMDLLRQHHNIELSKKVELQAMVPFVIQGKWCNVPSLASIGLELLGVVAGKNNPKLR 252

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
             DW    L+DEQ++YA +D    + +      +
Sbjct: 253 YKDWHKKSLADEQIKYACTDAFVSYKVGEMLQSQ 286


>gi|268603417|ref|ZP_06137584.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
 gi|268587548|gb|EEZ52224.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
          Length = 264

 Score = 43.4 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 18  LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 78  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLREQLYGLPD 226


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score = 43.4 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 12/186 (6%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA-----AGQKNAPNLVGMLVDEKREK 77
           + VD ET GL   +D +  +  +        + ++        K    +   L  E  + 
Sbjct: 358 VCVDFETTGLDVFKDTIIGISFAIRSNEAFYLDVSGRTNIDKDKCIDMVFETLAKEDIKV 417

Query: 78  IFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           I H  +++  ++          + F T +A+ L      ++ + D     L  N  K   
Sbjct: 418 IGHNLKYEYKMM-RAINKSFGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSD 476

Query: 137 SSDWSADDLSD----EQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRA 191
            +D +   L D    + ++YA  D          F   L+     +L        +   A
Sbjct: 477 ITDNAKKTLLDVPLKDVVEYACEDADITFRFYECFAPLLKTHNLEELFFNIEMPLVSVLA 536

Query: 192 ELDLLG 197
           +++  G
Sbjct: 537 DMEFDG 542


>gi|240117716|ref|ZP_04731778.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
          Length = 255

 Score = 43.4 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 9   LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 69  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLREQLYGLPD 217


>gi|240127974|ref|ZP_04740635.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 255

 Score = 43.4 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 9   LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 69  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLREQLYGLPD 217


>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC
           33386]
          Length = 1421

 Score = 43.4 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 41/163 (25%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD--------------- 52
           P +      + I  D ET G  P +D++  +++      G   +D               
Sbjct: 389 PKDAMIEQEEYIIFDIETTGFDPYKDKI--IEIGAVKLKGRNIIDRFSAFVNPEVPIPEE 446

Query: 53  IIRIAAGQKN-----------APNLVGMLVDEKREKIFHYGRFDIAVL-----FYTFGVR 96
           II++     +            P  +    D     + H  +FD+  L            
Sbjct: 447 IIKLTNITDDMVKDAELIDTVLPRFLEFCGD--CTMVAHNAKFDVGFLTQKARQLELEFL 504

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
              V  T   +R+  T   +  LK        I++    ++ D
Sbjct: 505 PS-VIDTLYWARVLITDLKRFNLKAL-ANYFNISLDNHHRAVD 545


>gi|322818895|gb|EFZ26176.1| hypothetical protein TCSYLVIO_7655 [Trypanosoma cruzi]
          Length = 202

 Score = 43.4 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           W    L D  L+YAA DV H+  L     EK
Sbjct: 32  WDIRPLPDHFLEYAADDVRHILLLANHLVEK 62


>gi|254805232|ref|YP_003083453.1| putative DNA polymerase III subunit [Neisseria meningitidis
           alpha14]
 gi|254668774|emb|CBA06684.1| putative DNA polymerase III subunit [Neisseria meningitidis
           alpha14]
          Length = 461

 Score = 43.4 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 9   LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 68

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 69  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 217


>gi|168211075|ref|ZP_02636700.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
 gi|170710890|gb|EDT23072.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
          Length = 642

 Score = 43.4 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 28/115 (24%)

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLT-------RTYTNQHGLK 120
           +  +E   K+ H   F+ +     +G+ ++ PVF T + S LT       RT  +  GLK
Sbjct: 93  VFHNESLIKVAHNISFE-SSFLCEYGIVIKEPVFDTMLGSMLTFKSFGEFRTLRDS-GLK 150

Query: 121 DNLKELLGINISKAQQSS--------DWSADDLSDEQLQ---YAASDVVHLHALR 164
              KE+   ++      S        D    +L  E  +   YA +D  +   L 
Sbjct: 151 LLAKEIFNEDLP---SFSHVVNGTHFD----NLHSEHKETVRYACADSDYALRLY 198


>gi|297823419|ref|XP_002879592.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325431|gb|EFH55851.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 153

 Score = 43.4 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 14/137 (10%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFD---IAVLFYTFGVRVR 98
           +QL  G     II+++  ++    L   L DE    +  +   D   +    +   +   
Sbjct: 12  LQLCVG-TRCLIIQLSHCKRMPDVLRSFLEDETITFVGVWNSQDKDNLERFRHQLEIW-- 68

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAAS 155
            +           T+      +    E LG   +   K    S+W A  LS +Q+  A+ 
Sbjct: 69  RLLDI---RHYLATWLRNSSFEQGRSECLGHEGVRKDKEICRSNWGARSLSHDQIVQASH 125

Query: 156 DVVHLHAL--RLQFTEK 170
           DV     L  + +  ++
Sbjct: 126 DVYVFCKLGVKERLWKE 142


>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1459

 Score = 43.4 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 35/150 (23%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDI---IRIAAGQKNAPNLVGM 69
            +  D ET G  P  D++  +++           G+ +  +   I I         +   
Sbjct: 425 YVVFDIETTGFDPFNDKI--IEIGAVKMRGREVIGEFSEFVNPEIPIPQKITELTTITDE 482

Query: 70  LVD--EKREKIF--------------HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRL 109
           +V   EK E +               H  +FD+  +       G+   P V  T   +R 
Sbjct: 483 MVANAEKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYSPSVIDTLPLART 542

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139
                  +GL + +K   GI +    ++ D
Sbjct: 543 LLPELRGYGLANLVK-YFGITLETHHRAVD 571


>gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 1446

 Score = 43.4 bits (102), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 36/159 (22%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVDII--------RIAAGQK 61
           +        +  D ET+GL      +  +++      G   V+           I    +
Sbjct: 412 DALIEEESFVVFDLETMGLNSHEHEI--IEIGAVKLQGTRIVERYSQLVNPKKPIPKKIQ 469

Query: 62  NAPNLVGMLVD--EKREKIF--------------HYGRFDIAVLFYT----FGVRVRP-V 100
              N+   +VD     E++               H   FD+  +        G   +P V
Sbjct: 470 ELTNISQDMVDNMPTIEEVLPKFMEFVGDSTMVAHNAPFDMGFIRRDVKKFMGYDYKPAV 529

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
             T   +R        +GLK+   ++LG+++    ++ D
Sbjct: 530 IDTLQMARDLYPELKAYGLKNL-NKVLGLSLDNHHRAVD 567


>gi|330881726|gb|EGH15875.1| ribonuclease D [Pseudomonas syringae pv. morsprunorum str.
          M302280PT]
          Length = 38

 Score = 43.4 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 57 AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV 88
               N   L  +L +    K+ H    D+ V
Sbjct: 1  PLLINNWAPLSALLENPDVIKVVHACSEDLEV 32


>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
 gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
          Length = 1443

 Score = 43.4 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 34/158 (21%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
           P          +  D ET GL    D    L  V++  G                    I
Sbjct: 418 PEHRLLADTTYVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDKYESFANPHHPLSATTI 477

Query: 55  RIAAGQKN----APNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVR--VRP 99
            +     +    AP +  +       + +    + H   FDI  L   +  FG+   V P
Sbjct: 478 ELTGITDDMVRNAPEVEQVIKEFHAFIGDAIV-VAHNASFDIGFLYTGYKKFGLEDTVHP 536

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           V  T   +RL       H L    K+   I +++  ++
Sbjct: 537 VIDTLELARLLYPTMKNHRLNTLCKKF-NIELTQHHRA 573


>gi|325140605|gb|EGC63125.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis CU385]
          Length = 469

 Score = 43.1 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 17  LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 76

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 77  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 136

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 137 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 177

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 178 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 225


>gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80]
 gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80]
          Length = 525

 Score = 43.1 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 10/141 (7%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           L  +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +     
Sbjct: 1   LKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLAL 59

Query: 125 ELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQRLGRSD 178
             L  +    +Q +    + L+  Q+      QYAA D      L  +    +++  + +
Sbjct: 60  RFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLE 119

Query: 179 LA--TSCCNFLMDRAELDLLG 197
                     +   + ++  G
Sbjct: 120 QVYREIEMPLVPVLSRIERTG 140


>gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 889

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 44/143 (30%), Gaps = 33/143 (23%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRT 112
                 + +       L D  R K+FH  +  + VL    G  V  V   T +A+ L + 
Sbjct: 359 DPAQLDETDETAFAAWLADADRPKVFHDAKGAMRVLAEH-GWSVDGVRMDTALAAYLVKP 417

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                 L     E L                +L+      AA+D             +L 
Sbjct: 418 GRRSFALDALSLEYL--------------HRELAPA----AAAD------------GQL- 446

Query: 173 RLGRSDLATSCCNFLMDRAELDL 195
             G  + A +    +  R+ LDL
Sbjct: 447 AFGADEAAEAEMLMIQARSILDL 469


>gi|269213464|ref|ZP_05982022.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           cinerea ATCC 14685]
 gi|269146173|gb|EEZ72591.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           cinerea ATCC 14685]
          Length = 470

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 67/233 (28%), Gaps = 67/233 (28%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---------------------QLS 45
           +  +   R+   +AV D E+ G     DR+    +V                     Q  
Sbjct: 18  LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77

Query: 46  PG-----DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GV-R 96
            G     DG V         + A  L  +L  +    I H  RFD   L + F   G+  
Sbjct: 78  SGLTGISDGMVA--DAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRAGIGF 133

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
             P  C+   SR       +H L   ++  LGI +    +                A +D
Sbjct: 134 SSPALCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMAD 176

Query: 157 VVHLHALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
           V    AL       L   G       C            L +R    L G  +
Sbjct: 177 VS---ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|29366786|ref|NP_813726.1| gp11 [Streptomyces phage phiBT1]
 gi|29243106|emb|CAD80134.1| gp11 [Streptomyces phage phiBT1]
          Length = 624

 Score = 43.1 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 66/206 (32%), Gaps = 40/206 (19%)

Query: 3   TIRV--HEGDIPAEC-AARYVDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIA 57
           TIRV   + D+      AR    +A+DTET GL        +  VQ         I    
Sbjct: 14  TIRVPETDADLREFMHWARNKPELALDTETTGLDIYAPGYGLRTVQFGTTHEAWVIHYEL 73

Query: 58  AGQKNAPNLVGMLVDEKREK-----IFHYGRFDIAVLFYTFGVRVRPV----FCTKIASR 108
            G             +   K     + H   FD  VL     V +  +      TKI + 
Sbjct: 74  RG-----RFKE--AADYVLKHCPRFLIHNAMFDWLVLDAHADVSLESLAPRTIDTKIKAT 126

Query: 109 LTRTYTNQ-----HGLKDNLKELLGINISKAQQ--SSDWSADDLSDE------QLQ---- 151
           L      Q      GLK      +  +    Q   ++ + +  L+         L+    
Sbjct: 127 LIDPRQPQEGGIGTGLKPLSAFYVDPSAPDTQGDLTAVFRSLGLTKATGFAGIDLRHPTY 186

Query: 152 --YAASDVVHLHALRLQFTEKLQRLG 175
             YA  DV++   L      + +RLG
Sbjct: 187 NLYAGLDVIYTARLNPCLDVEHERLG 212


>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
 gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
          Length = 1443

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 48/158 (30%), Gaps = 34/158 (21%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
           P          +  D ET GL    D    L  V++  G                    I
Sbjct: 418 PEHRLLEEATYVVFDVETTGLSTAYDTIIELAAVKIKDGQVIDKYESFANPHHPLSATTI 477

Query: 55  RIAAGQKN----APNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVR--VRP 99
            +     +    AP +  +       + +    + H   FDI  L   +  FG+     P
Sbjct: 478 ELTGITDDMVRHAPEVEQVIKEFHAFIGDGIV-VAHNASFDIGFLYTGYKKFGLEGTTHP 536

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           V  T   +RL       H L    K+   I +++  ++
Sbjct: 537 VIDTLELARLLYPTMKNHRLNTLCKKF-NIELTQHHRA 573


>gi|268684113|ref|ZP_06150975.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
 gi|268624397|gb|EEZ56797.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
          Length = 264

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 18  LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 78  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLREQLYGLPD 226


>gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
 gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
          Length = 859

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95
           ++L ++     D    +  +A     +   L   L + +  K  H  +     L    G+
Sbjct: 330 EQLTLL---DRDNVAIVQDLADVDPKDEKVLAEWLANPQATKWLHDSKQTYHTLQ-DQGL 385

Query: 96  RVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           ++  V   T +A+ L R      GL D ++  +G  +S
Sbjct: 386 KLDGVEHDTSLAAYLLRPDVRTLGLADVVQRHVGHELS 423


>gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 686

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 29/145 (20%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTR 111
               +  P  V  + D     + H  RFD+  +              P   T   +RL  
Sbjct: 484 PDIAEELPKFVEFVGDA--VLVAHNARFDMGFIQANLKNIGMPELPNPSLDTLELARLLF 541

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                H L     +   +++    +                A  D V L  +     ++ 
Sbjct: 542 PSLKNHRLNTLADKF-KVSLENHHR----------------AIDDTVALMHILNHLLQEA 584

Query: 172 QRLGRSDLATSCCNFLMDRAELDLL 196
           +    + L     N L D    DL 
Sbjct: 585 EEQNLTQL-----NRLNDHVGKDLR 604


>gi|15677307|ref|NP_274462.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|7226692|gb|AAF41810.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|316984587|gb|EFV63552.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Neisseria meningitidis H44/76]
 gi|325199934|gb|ADY95389.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
           meningitidis H44/76]
          Length = 470

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV----------------QLSPGDGT 50
           +  +   R+   +AV D E+ G     DR+    +V                Q       
Sbjct: 18  LLEKVFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFV 77

Query: 51  VDIIRIAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
             +  I+ G   +AP    +  +     K    + H  RFD   L + F   G+    P 
Sbjct: 78  AGLTGISDGMVADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRCLYPQFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G       C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 226


>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
 gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
          Length = 1438

 Score = 43.1 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
 gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
          Length = 944

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 26/190 (13%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------- 68
                + + +DTET  + P   +L  + LS   G    I +A    +   L         
Sbjct: 349 LLDASELVCIDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSRE 408

Query: 69  --------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119
                    L DE R K+  + ++D  V     G+ +R +   T + S +  ++ N HG+
Sbjct: 409 AVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGITHDTMLQSYVLASHRN-HGM 466

Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               + +L +          K      +    L     +YAA D      L      K+ 
Sbjct: 467 DALAERVLHLKTITYEEVCGKGAAQIGFDEVALDRA-TEYAAEDADITLRLHRALYPKVA 525

Query: 173 RLGRSDLATS 182
              +      
Sbjct: 526 EDDKLRYVYE 535


>gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 1447

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 39/157 (24%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD------I 53
            +  +E  +P     +    +  D ET GL    DR+  +Q+S     DG V       I
Sbjct: 412 PLVYNENHLP----LKGQPYVIFDIETTGLSAIYDRI--IQVSAVKMQDGEVLDHFDQFI 465

Query: 54  IRIAAGQKNAPNLVGMLVD--------EKREKIF-----------HYGRFDIAVL----- 89
                  +    L  +  D        E+  K+F           H   FD+  +     
Sbjct: 466 DPGFHLSEQTTALTSITDDMVQGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYE 525

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
            +  G   +PV  T   +R        + L    K  
Sbjct: 526 RHGMGQIKQPVIDTLPLARFLHPDFRGYRLNTLSKRF 562


>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 1436

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 571 ATAYIFIKMVQQMKELG 587


>gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956]
 gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 1447

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 39/157 (24%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD------I 53
            +  +E  +P     +    +  D ET GL    DR+  +Q+S     DG V       I
Sbjct: 412 PLVYNENHLP----LKGQPYVIFDIETTGLSAIYDRI--IQVSAVKMQDGEVLDHFDQFI 465

Query: 54  IRIAAGQKNAPNLVGMLVD--------EKREKIF-----------HYGRFDIAVL----- 89
                  +    L  +  D        E+  K+F           H   FD+  +     
Sbjct: 466 DPGFHLSEQTTALTSITDDMVQGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYE 525

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
            +  G   +PV  T   +R        + L    K  
Sbjct: 526 RHGMGQIKQPVIDTLPLARFLHPDFRGYRLNTLSKRF 562


>gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group]
          Length = 1033

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 50/181 (27%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G+           D   +K++H   FD  V+    G++V      
Sbjct: 321 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDSHVIEN-CGIKVAGFHAD 379

Query: 103 TKIASRL---TRTYTNQHGLKDN-----LKELLGINISKA-------------------- 134
           T   +RL   +R     + L+       + + +  +I K                     
Sbjct: 380 TMHLARLWDSSRRTDGGYSLEGLTNDHRVMDAVVKDIPKTGKVSMKTIFGRKKVRKDGSE 439

Query: 135 -----------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
                       Q  D    +L    + Y++ D +    L      KL+     +     
Sbjct: 440 GKTISIEPVEKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAK---EWIFDD 490

Query: 184 C 184
           C
Sbjct: 491 C 491


>gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
 gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
          Length = 1447

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 39/157 (24%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD------I 53
            +  +E  +P     +    +  D ET GL    DR+  +Q+S     DG V       I
Sbjct: 412 PLVYNENHLP----LKGQPYVIFDIETTGLSAIYDRI--IQVSAVKMQDGEVLDHFDQFI 465

Query: 54  IRIAAGQKNAPNLVGMLVD--------EKREKIF-----------HYGRFDIAVL----- 89
                  +    L  +  D        E+  K+F           H   FD+  +     
Sbjct: 466 DPGFHLSEQTTALTSITDDMVQGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYE 525

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
            +  G   +PV  T   +R        + L    K  
Sbjct: 526 RHGMGQIKQPVIDTLPLARFLHPDFRGYRLNTLSKRF 562


>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1438

 Score = 43.1 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 952

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102
           S  DG V +I ++ G+     ++  L D+  EK      F+   L    G R++P   +C
Sbjct: 38  SIDDGGVKVIDLSNGEIIPEEILSALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYC 97

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           T I S           L+  + E+L   + K 
Sbjct: 98  TMIWSAYLGLPL---SLEK-VGEVL--KLDKQ 123


>gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 908

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 42  VQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           V L+   G       A   + +       L D  R K+FH  +  + V            
Sbjct: 365 VALATSAGPAAWFDPAELDEADERAFAAWLADAGRPKVFHDAKSAMRVFAEHGWSIEGVT 424

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             T +A+ L +       L     E L   +
Sbjct: 425 MDTALAAYLVKPGRRSFDLDALSLEYLHREL 455


>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
 gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
          Length = 946

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 26/190 (13%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------- 68
                + + +DTET  + P   +L  + LS   G    I +A    +   L         
Sbjct: 351 LLDASELVCIDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSRE 410

Query: 69  --------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119
                    L DE R K+  + ++D  V     G+ +R +   T + S +  ++ N HG+
Sbjct: 411 AVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGITHDTMLQSYVLASHRN-HGM 468

Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               + +L +          K      +    L     +YAA D      L      K+ 
Sbjct: 469 DALAERVLHLKTITYEEVCGKGAAQIGFDEVALDRA-TEYAAEDADITLRLHRALYPKVA 527

Query: 173 RLGRSDLATS 182
              +      
Sbjct: 528 EDDKLRYVYE 537


>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
          Length = 1436

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  +++Q LG
Sbjct: 571 ATAYIFIKMVQQMQELG 587


>gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414]
 gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414]
          Length = 970

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 59/170 (34%), Gaps = 25/170 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLS------PGDGTVDIIRIAAGQKNAPN-----LVGML 70
            +A DTET  L PR     +V +       P +     I    G+  + +     L  +L
Sbjct: 380 PVAWDTETSDLEPRDA--TLVGIGCCWGTQPDESAYIPIAHKFGENLSQDVVFAELSPIL 437

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                 K F  G+FD  V           VF T +AS +    T  H L D     LG+ 
Sbjct: 438 TSADYPKTFQNGKFDRLVFRCQGIKLAGIVFDTMLASYVLNPDTP-HNLNDISLRYLGLI 496

Query: 131 I-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
           +        K Q  +D S   +      Y    V     L  +  E+L++
Sbjct: 497 LKSYEDLVPKGQTIADISIASVG----YYCCLQVHATFQLVQKLREELEK 542


>gi|240125521|ref|ZP_04738407.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           SK-92-679]
          Length = 255

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 9   LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 69  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLREQLYGLPD 217


>gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group]
          Length = 885

 Score = 43.1 bits (101), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 35/168 (20%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G+           D    K++H   FD  V+    G++V      
Sbjct: 175 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENY-GIKVAGFHAD 233

Query: 103 TKIASRL---TRTYTNQHGLKDNL--KELLGI---NISKAQQSS-----DW--------- 140
           T   +RL   +R     + L+       ++G+    + K  + S      W         
Sbjct: 234 TMHLARLWDSSRRIDGGYSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSA 293

Query: 141 -----------SADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
                         D  +  + Y++ D +    L      KL++   +
Sbjct: 294 GKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYESLKSKLEKKHWT 341


>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
          Length = 1436

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 571 ATAYIFIKMVQQMKELG 587


>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1438

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
 gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
          Length = 1463

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNIIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLKQVLQEFQEFCQDTVLVAHNATFDVGFMNANYERHGLPKITQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 565


>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 1436

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 571 ATAYIFIKMVQQMKELG 587


>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
          Length = 1436

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 571 ATAYIFIKMVQQMKELG 587


>gi|194747874|ref|XP_001956374.1| GF24627 [Drosophila ananassae]
 gi|190623656|gb|EDV39180.1| GF24627 [Drosophila ananassae]
          Length = 293

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 13/143 (9%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           +  +V ++  + T      A G    P    +L  ++  K+ HY         +  G+R+
Sbjct: 82  KTSVVVVATANETYVFDVQALGGTIHPEFRFILEAKRPRKVVHYSHRIGDHFNHRHGIRL 141

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK---------AQQSSDWSADDLSDE 148
             +  +  A  L R       L + +  + G+ + K          +   ++ A  L+  
Sbjct: 142 GGICDSFTALCLARRERTPRTLPEAVSLVFGLPLEKLLCKEVSGSRESLRNFIARPLTHS 201

Query: 149 QLQYAASDVVHLHALRLQFTEKL 171
           QL+Y A     L  L+L+  ++L
Sbjct: 202 QLRYLAR----LAILQLKMHDRL 220


>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 1438

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
 gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
          Length = 944

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 26/190 (13%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------- 68
                + + +DTET  + P   +L  + LS   G    I +A    +   L         
Sbjct: 349 LLDASELVCIDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSRE 408

Query: 69  --------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119
                    L DE R K+  + ++D  V     G+ +R +   T + S +  ++ N HG+
Sbjct: 409 AVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGITHDTMLQSYVLASHRN-HGM 466

Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               + +L +          K      +    L     +YAA D      L      K+ 
Sbjct: 467 DALAERVLHLKTITYEEVCGKGAAQIGFDEVALDRA-TEYAAEDADITLRLHRALYPKVA 525

Query: 173 RLGRSDLATS 182
              +      
Sbjct: 526 EDDKLRYVYE 535


>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
 gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
 gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
 gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
 gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 1438

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 1438

 Score = 43.1 bits (101), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|321452322|gb|EFX63735.1| hypothetical protein DAPPUDRAFT_118908 [Daphnia pulex]
          Length = 341

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 52/172 (30%), Gaps = 50/172 (29%)

Query: 22  AIAVDTETLGLMPRRD------RLCIVQLSPGDGTVDIIRIAAGQKNAPNLV-------G 68
            + VD E               +  ++Q++  D    +   +  +  + +++        
Sbjct: 164 VVGVDIE-------WPPFGTLAKATVLQIATHDKIFLLDIFSLREDKSCSVINSQQLIGD 216

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTF------------GVRVRPVF---CTKIASRLTRTY 113
           +  +    K+ +  + D+ VL  +              + ++ ++    TK  S L    
Sbjct: 217 LFGNRHILKLGYGLKEDLHVLSRSLPGIGDVSKSIVNWIDIKNLWSNIETKYPSFLPPAV 276

Query: 114 TNQHGLKDNLKELLGINI------------SKAQQSSDWSADDLSDEQLQYA 153
            N     D   +     +             K +Q SDW    L   Q  YA
Sbjct: 277 LND---GDTCSQETHKGLSGLVKLLLGLPLDKKEQFSDWQKRPLRTSQFIYA 325


>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 1438

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 1438

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 1442

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 416 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 474

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 475 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 577 ATAYIFIKMVQQMKELG 593


>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
 gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
 gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
 gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
 gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 1438

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
 gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
 gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
          Length = 1436

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 571 ATAYIFIKMVQQMKELG 587


>gi|327356611|gb|EGE85468.1| 3'-5' exonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 270

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 34/193 (17%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRI--------AAGQKNAPNLVGMLV 71
            ++ +D E + L  R   + I+Q+       V ++ I             N  +L  +L 
Sbjct: 28  PSLYIDLEGINL-CREGSISILQIFNHPKEHVYLVDIHHLGEAAFTTTGTNGKSLKSILE 86

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-----HGLKD----- 121
                K+F   R D   LF+ FG+R++ +   ++    +R           GL       
Sbjct: 87  CPVTPKVFFDVRNDSNALFFHFGIRLQGIEDIQLMENGSRPGPLSRKKFVSGLARCIEMD 146

Query: 122 -----NLKELLGINISKAQQ---------SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                  K L   N  K  Q            ++   +    + Y   DV  +  LR  +
Sbjct: 147 TPVSPAAKRLWKENKDKGTQLFAPERGGSHEVFNVRPIPQAIIDYCVQDVSFMPLLRTLY 206

Query: 168 TEKLQRLGRSDLA 180
             KL    +S++ 
Sbjct: 207 WSKLTPHWKSEVV 219


>gi|261196313|ref|XP_002624560.1| 3'-5' exonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239587693|gb|EEQ70336.1| 3'-5' exonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239614653|gb|EEQ91640.1| 3'-5' exonuclease [Ajellomyces dermatitidis ER-3]
          Length = 305

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 34/193 (17%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSP-GDGTVDIIRI--------AAGQKNAPNLVGMLV 71
            ++ +D E + L  R   + I+Q+       V ++ I             N  +L  +L 
Sbjct: 28  PSLYIDLEGINL-CREGSISILQIFNHPKEHVYLVDIHHLGEAAFTTTGTNGKSLKSILE 86

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ-----HGLKD----- 121
                K+F   R D   LF+ FG+R++ +   ++    +R           GL       
Sbjct: 87  CPVTPKVFFDVRNDSNALFFHFGIRLQGIEDIQLMENGSRPGPLSRKKFVSGLARCIEMD 146

Query: 122 -----NLKELLGINISKAQQ---------SSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                  K L   N  K  Q            ++   +    + Y   DV  +  LR  +
Sbjct: 147 TPVSPAAKRLWKENKDKGTQLFAPERGGSHEVFNVRPIPQAIIDYCVQDVSFMPLLRTLY 206

Query: 168 TEKLQRLGRSDLA 180
             KL    +S++ 
Sbjct: 207 WSKLTPHWKSEVV 219


>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1436

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 571 ATAYIFIKMVQQMKELG 587


>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
 gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
          Length = 1438

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
 gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
          Length = 908

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 21/108 (19%)

Query: 42  VQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRF----------DIAVLF 90
           V ++ G G      + A    +   L   L D +R K  H  +           D+    
Sbjct: 356 VAVADGAGQAVAYDLTAIDPADETALAAWLADPQRPKALHAAKEASHALAGRGLDLE--- 412

Query: 91  YTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
              GV     F T++A+ L +     + L D     L   +     SS
Sbjct: 413 ---GVT----FDTELAAYLCQPDRRAYDLPDLAIGYLRRELGGDDGSS 453


>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 1438

 Score = 43.1 bits (101), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
          Length = 1438

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1435

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 571 ATAYIFIKMVQQMKELG 587


>gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
 gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
          Length = 933

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 17/133 (12%)

Query: 55  RIAAGQKN----APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT 110
            +A GQ +       L  ML D+   K+    +  + +L    G+ + PV  T + S   
Sbjct: 396 DLAEGQMDFDAALALLRPMLEDDSIMKVAQDAKAAMKLLGRH-GIALAPVDDTHLLSYAL 454

Query: 111 RTYTNQHGLKDNLKELLG---INIS------KAQQSSDWSADDLSDEQLQYAASDVVHLH 161
            +  + H L      LLG   I +       K+ ++ D       +    YAA +   + 
Sbjct: 455 NSGLHGHTLDTLSDRLLGHRPIELKSVVGTGKSARTFD---RVPVEAVTPYAAEEADIVL 511

Query: 162 ALRLQFTEKLQRL 174
            L     ++L R 
Sbjct: 512 RLWQALKQQLFRK 524


>gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum]
          Length = 1855

 Score = 42.7 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 47/167 (28%)

Query: 47   GDGTVDIIRIA--AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT------FGVRVR 98
            G G+   + I    G +          DE   K++H   FD  V +        FG    
Sbjct: 1177 GTGSRIWVDILGSNGDEILQIFKEYFEDESIFKVWHNYAFDRHVFYNHNIDVVGFG---- 1232

Query: 99   PVFCTKIASRL---TRTYTNQHGLKDNLKELLGINISKAQQSSD--WSADDL-SD----- 147
                T + +RL   +R     + L+   K+L    + K + + D  +    L SD     
Sbjct: 1233 --GDTMLMARLWDASRMMRGGYSLEGLTKDL----LDKHKTNMDDLFGQPKLKSDGTPGK 1286

Query: 148  ------------------EQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                              + ++Y++ D      LR    +KL  +  
Sbjct: 1287 GIILPPLEHLQRSSKHLTKWIEYSSRDAEVTWMLRENLHKKLMTMEW 1333


>gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358]
          Length = 653

 Score = 42.7 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 42  VQLSP---GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG---V 95
           +QL     GD  V  + +  G      ++  L D KR K+ H  +F+   + Y      +
Sbjct: 33  IQLFSYRFGDEPVTRLDLQQGDVIPSKVLRALRDPKRIKVAHNAQFERVCIGYELDGRPL 92

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
                 CT +         +  G+   L   L +   K 
Sbjct: 93  DPTNWRCTMVWGSCLGLPQSLDGMGKALG--LDVQKDKE 129


>gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
          Length = 896

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 25/191 (13%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGM-LVDEKREKIF----- 79
           DTET  L  R+ ++     S        I IA       + V +    E  E+IF     
Sbjct: 336 DTETTSLDVRKAKIVGFSFSVNGVDCYYIPIAHNYLGVESQVSLECARECIEQIFQSQYV 395

Query: 80  --HYGRFDIAVLFYTFGVR---VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--- 131
             H  ++D+ +L   F         V  + + + L ++ T    L   +K+     +   
Sbjct: 396 IGHNLKYDLEILKTNFDFVLEDFSKVRDSMLLAWLLQSDT-LCNLDFLMKKYFNHEMIHY 454

Query: 132 ----SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186
                K +  S+     L     +YA+ D    + L  +    L      ++A      F
Sbjct: 455 KDIVGKNENFSN----ILIQHACEYASEDAAACYQLYFKLRG-LMDESLLEIAQKVEFPF 509

Query: 187 LMDRAELDLLG 197
           +     ++L G
Sbjct: 510 IQSLMNMELSG 520


>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1415

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 410 PQDVVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 469 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 571 ATAYIFIKMVQQMKELG 587


>gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 481

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 12/122 (9%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A DTET  L      L  +  +  +G    + +A    +AP           L
Sbjct: 351 LKQAELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQL 410

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L DE + K+    ++D +V+    GV +R +   T + S +  +   +H +      
Sbjct: 411 KPLLEDESKAKVGQNLKYDASVMARY-GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 469

Query: 126 LL 127
            L
Sbjct: 470 FL 471


>gi|308484057|ref|XP_003104229.1| hypothetical protein CRE_24937 [Caenorhabditis remanei]
 gi|308258198|gb|EFP02151.1| hypothetical protein CRE_24937 [Caenorhabditis remanei]
          Length = 228

 Score = 42.7 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            Q  L+D    + G  ISK++  S+W+A  L ++Q++YA  D + LH +
Sbjct: 127 PQMSLQDTAARI-GAPISKSKTMSNWTAWRLREDQIRYAMMDAIVLHYI 174


>gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 684

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 57/173 (32%), Gaps = 41/173 (23%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGD------GTVDI---IRI------ 56
            A   V+ + VDTET GL P  DR   +  V++  G+        V     I        
Sbjct: 94  LALEEVEFVVVDTETTGLRPGPDRVIEVAGVRMRNGEILDTFQSLVHPERRIPPFIVRFT 153

Query: 57  ---AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGV--RVRPV--FCTK 104
                   +AP    ++ D     E    + H   FD+  L +   +     PV    T 
Sbjct: 154 GISPEMLADAPKARDIMPDFLRFIEGATLVGHNLSFDVNFLTHEAQLLGLPFPVEGLDTI 213

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           + SR       +  L D + + L I               L D Q+    +DV
Sbjct: 214 LLSRRLLPGLKRFKL-DMVAQYLQIQTHNRH-------RALGDAQVT---ADV 255


>gi|157265423|ref|YP_001467981.1| DNA polymerase I [Thermus phage P74-26]
 gi|156905318|gb|ABU96961.1| DNA polymerase I [Thermus phage P74-26]
          Length = 728

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 51/151 (33%), Gaps = 24/151 (15%)

Query: 1   MTTIRVHEGDI--PAECAARYVDAIAVDTETLGLMPRRDRLCI-------VQLSPGDGTV 51
           M +  V   D    A  A      +A+DTET G  P    L +       V ++      
Sbjct: 1   MRSYHVVTNDTFPLALDAIAQAPRVALDTETYGSNPFN--LYLPDFRLVGVAIATSPTEA 58

Query: 52  DIIRIAAGQKNAP----NL------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
               +            NL        +L   KR  ++H   +D  VL  T  + +   +
Sbjct: 59  WYFPVDHQDFLLRYQPANLPREAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTY 118

Query: 102 --CTKIASRLTRTYTNQHGLKDNLKELLGIN 130
              T +A  L        GLK+  K LLG+ 
Sbjct: 119 GDDTMVALHLVDENHP-LGLKEWAKTLLGLE 148


>gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
           13941]
 gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 944

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 41/127 (32%), Gaps = 27/127 (21%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           AP     L +     + H  RFDI +L        +P F T   + L    T  + L   
Sbjct: 74  APRFAAFLKNYPL--VGHNVRFDINMLQAQGMRLPQPAFDTFELATLLMPRTPAYRLSAL 131

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV---HLHALRLQ-------FTEKLQ 172
            +  LGI   +A          LSD        DV     LH LR           E ++
Sbjct: 132 AET-LGIVHDEAH-------RALSDA-------DVTRQVFLHLLRRIDALSLNDLNEIVR 176

Query: 173 RLGRSDL 179
              R D 
Sbjct: 177 LTSRVDW 183


>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
 gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
          Length = 944

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 26/190 (13%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL--------- 66
               V+ + +DTET  + P   +L  + LS   G    I +A    +   L         
Sbjct: 349 LLDTVELVCIDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDNAAQLSRE 408

Query: 67  ------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119
                    L DE R+K+  + ++D  V     G+ +R +   T + S +  ++ N HG+
Sbjct: 409 AVLARMKLWLEDETRKKVGQHLKYDAHVFANH-GIALRGIAHDTMLQSYVLASHRN-HGM 466

Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               + +L +          K      +    L     +YAA D      L      K+ 
Sbjct: 467 DALAERVLHLKTITYEEVCGKGAAQIGFDEVALDRA-TEYAAEDADITLRLHRALYPKVT 525

Query: 173 RLGRSDLATS 182
              +      
Sbjct: 526 EDDKLRYVYE 535


>gi|268601098|ref|ZP_06135265.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
 gi|268585229|gb|EEZ49905.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
          Length = 264

 Score = 42.7 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIR-------- 55
           +  +   R+   +AV D E+ G     DR+    +V   Q         +          
Sbjct: 18  LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPQFV 77

Query: 56  -----IAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                I+ G   +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 78  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLREQLYGLPD 226


>gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330]
          Length = 925

 Score = 42.7 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 64/196 (32%), Gaps = 35/196 (17%)

Query: 6   VHEGDIPAECAARYV------DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG 59
           V   +  A+  AR          I +DTET    P + +L  + ++   G    I +A  
Sbjct: 327 VTTAEQLADLVARLHVCMQNGSPIGLDTETTSREPMQAQLVGISVALAAGEAFYIPVAHR 386

Query: 60  QKNA--------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLT 110
             +A         +L   L  E   KI    ++D  +      + ++ +     +AS + 
Sbjct: 387 FADAQLDWATVKSSLQPFLESESLGKIGQNLKYDQHIFKNQ-DIDLKGIVGDAMLASYIV 445

Query: 111 RTYTNQHGLKDNLKELLGINI----------SKAQQSSDWSADDLSDEQ--LQYAASDVV 158
            ++   H L D     LG+            +K    +D       D Q   QYA  D  
Sbjct: 446 ESHLT-HNLDDLAARWLGLETISYESLCGKGAKEISFAD------VDVQAATQYACQDAD 498

Query: 159 HLHALRLQFTEKLQRL 174
               +      ++   
Sbjct: 499 FALRIEQHLRTQMDAA 514


>gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 916

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 44/150 (29%), Gaps = 23/150 (15%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
             A  + +       + D  R K+ H  +  + V              T +A+ L +   
Sbjct: 387 PSALDEADERAWAAWIADPDRPKVLHNAKGAMRVFPEHGWSIAGVTMDTALAAYLVKPGR 446

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV----------VHLHALR 164
               L     E L   ++ A  +         D QL + A D             +  L 
Sbjct: 447 RSFALDALSVEYLHRELAPAAAA---------DGQLAFGADDTAEAEALMTQARAVLDLG 497

Query: 165 LQFTEKLQRLG-RSDLATSCCNFLMDRAEL 193
             F EKL  +G R  L       L   A L
Sbjct: 498 DAFAEKLDEVGARELLHQVE---LPTSALL 524


>gi|330934256|ref|XP_003304476.1| hypothetical protein PTT_17080 [Pyrenophora teres f. teres 0-1]
 gi|311318879|gb|EFQ87427.1| hypothetical protein PTT_17080 [Pyrenophora teres f. teres 0-1]
          Length = 741

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 46/177 (25%)

Query: 13  AECAARYV---DAIAVDTETL-GLMPRRDR--LCIVQLSPGDGTVD----IIRIAAGQKN 62
           AE  A+Y      +  D E      P   +    +VQL+  +        +      +K 
Sbjct: 197 AERVAQYFLREKVVGFDIEWKPRGNPHSIKQNASLVQLACENRIALFHLALFPGRKVEKL 256

Query: 63  APN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--------------C-TKIA 106
            P  L  +L      K+    + D   L    G++ + VF                +KI+
Sbjct: 257 MPPSLRAVLESLDIYKVGVAIKGDFTRLEKYLGIQPQGVFELSRLHNLVEWHDVDPSKIS 316

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS------------SDWSADDLSDEQLQ 151
            +L        GL   + + L + + K +Q             SDWS   LS EQ+ 
Sbjct: 317 KKL-------VGLAAQVHQHLQLPLYKGEQLDDDPEETASVRESDWSL-PLSLEQIH 365


>gi|254493534|ref|ZP_05106705.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
 gi|268681897|ref|ZP_06148759.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|226512574|gb|EEH61919.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
 gi|268622181|gb|EEZ54581.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|317164039|gb|ADV07580.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 264

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 18  LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 78  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLRERLYGLPD 226


>gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G            D   +K++H   FD  +L    G+  +  +  
Sbjct: 60  FGNGKNRLWVDVLDGGDGILEVFRRYFEDPSIKKVWHNYSFDKHILSRH-GIHPQGFYAD 118

Query: 103 TKIASRL 109
           T   +RL
Sbjct: 119 TMHLARL 125


>gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16]
 gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16]
          Length = 528

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 63/203 (31%), Gaps = 52/203 (25%)

Query: 21  DAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD----- 72
             + VD ET G   +RDR+    +V++ P DG ++   +     + P  +  +       
Sbjct: 29  PIVFVDLETTGADAQRDRITEIGVVEVGP-DGIIEWDTLLDPGMSIPPFIQRMTGITEEM 87

Query: 73  ------------------EKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLT 110
                             + R  + H  RFD   L   F   GV  R  V CT   SR  
Sbjct: 88  VRGQPSFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFRADVLCTVRLSRSL 147

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
                +HGL   +                     L+ +    A +D   L     +    
Sbjct: 148 FPSVERHGLDALIARFG-----------------LTPKGRHRALADAELLWQFWQKIHAT 190

Query: 171 LQRLGRSDLATSCCNFLMDRAEL 193
                  DL  S    L+ RA L
Sbjct: 191 YS----VDLVESAVRTLVRRASL 209


>gi|91224626|ref|ZP_01259887.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|91190514|gb|EAS76782.1| DNA polymerase I [Vibrio alginolyticus 12G01]
          Length = 680

 Score = 42.7 bits (100), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 34/168 (20%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA--SRLTRTYTN------ 115
           P L+  L+D     I H+ + ++  L+       R ++ T IA  +R    +        
Sbjct: 119 PKLLQPLLDLPTTYIAHHAKAELHCLWQLGLTEPRTIWDTCIAERARYLGLHVFDNDRVF 178

Query: 116 -------------------QHGLKDNLKEL---LGINISK---AQQSSDWSADDLSDEQL 150
                              ++ L             N+ K        D+ + + + EQ+
Sbjct: 179 DSENAEICARAEHAENNRIRYALNTVASRYDIHHRFNLVKSDLQHSFIDYDSGEFTREQI 238

Query: 151 QYAASDVVHLHALRLQFTEKLQRLG-RSDLATSCCNFLMDRAELDLLG 197
            YAA D +    L L   ++L   G    L T    ++   A ++  G
Sbjct: 239 HYAAEDAIVAAKLYLPQMQQLTLQGCYHHLITVEMPWVTTNAAMEWHG 286


>gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
 gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
          Length = 871

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 31/145 (21%)

Query: 47  GDGTVDIIRIAAG-----QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV- 100
            +G   +I          +K    L   + D+  +K+ H  +  +      + + ++   
Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKN-LITFLNKYDIDIQGFD 404

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD---- 156
           F T IA+ L  +    + + D +   L  +I      SD                D    
Sbjct: 405 FDTAIAAYLIDSSKANYEVFDLINRFLEKDI-----KSD--------------CDDLKAI 445

Query: 157 -VVHLHALRLQFTEKLQRLGRSDLA 180
              +L  L  +  E+L +    +L 
Sbjct: 446 CSSYLTKLYEKLKERLHKEDMDELY 470


>gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 583

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHG 118
           QK   +L  +L  +   K+F   +FD  +  +  G+ +   VF T +AS +       H 
Sbjct: 41  QKVLDSLRTILESKNYPKVFQNTKFDRLIFKHQ-GINLDGVVFDTMLASYVLHPE-KSHK 98

Query: 119 LKDNLKELL 127
           L +  ++ L
Sbjct: 99  LSELCEQYL 107


>gi|308490719|ref|XP_003107551.1| hypothetical protein CRE_13400 [Caenorhabditis remanei]
 gi|308250420|gb|EFO94372.1| hypothetical protein CRE_13400 [Caenorhabditis remanei]
          Length = 168

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           LKD++K +  +++ K +  SDW+A  L D+Q+ YAA D V L+ L
Sbjct: 58  LKDHVKIVTEMDLLKNETMSDWNAPRLRDDQVWYAAMDAVCLYYL 102


>gi|240115419|ref|ZP_04729481.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
          Length = 255

 Score = 42.7 bits (100), Expect = 0.034,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIR-------- 55
           +  +   R+   +AV D E+ G     DR+    +V   Q         +          
Sbjct: 9   LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPQFV 68

Query: 56  -----IAAGQ-KNAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                I+ G   +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 69  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLREQLYGLPD 217


>gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999]
          Length = 931

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKREKIFHYGRFDIAVLFY 91
           + L    G    I +     +AP           L  +L + K +K+ H  +FD  VL  
Sbjct: 373 ISLCVAAGDACYIPLLHDYPDAPEQLNSQWALEQLTPLLKNSKNQKVGHNLKFDKNVLAN 432

Query: 92  TFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL 150
             G+ +  V + T + S +  +   +H ++      LG +    +  +   A  L+  Q+
Sbjct: 433 H-GITLNGVAYDTMLESYVLNSVVTKHHIEALSLHYLGHSPITLESIAGKGAKQLTFNQI 491

Query: 151 Q------YAASDVVHLHALRLQFTEKL 171
                  +AA +   +  L      +L
Sbjct: 492 GLAEAAPFAAENADIILRLHQLLWPQL 518


>gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
 gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
          Length = 1032

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 21/132 (15%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ------------------- 60
             A AVD     + P +  LC + LS G      I +   Q                   
Sbjct: 440 AGAFAVDAIATSIDPMQAELCGIALSLGPNDACYIPLGHRQTGDGSGLFAAGLAPDQLGA 499

Query: 61  -KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
                 L  +L      KI    +F  AVL    GV +R +   ++ S +       HGL
Sbjct: 500 RDVLDALRPLLDSAGLAKIGFNIKF-TAVLLAQHGVTLRNIDDVQLISYVLDAGRGSHGL 558

Query: 120 KDNLKELLGINI 131
               +  LG  +
Sbjct: 559 DALSESNLGHTL 570


>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
 gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
          Length = 901

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 24/191 (12%)

Query: 7   HEGDIPAECAARYVDAI------AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           +E  +  E   R+V  +      A D ET  L      +  +  +        + +A   
Sbjct: 303 YETVLSEESFERWVKRLETAELFAFDLETNSLDYIEAEIVGLSFAIKPKEAAYVPLAHDY 362

Query: 61  KNAP----------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
             AP           L  +L D  R K+    +FD  VL    G+ +  +   + + S +
Sbjct: 363 DAAPLQLAREGVLARLQPLLQDSNRGKVGQNLKFDRNVLANY-GIELEGIRHDSMLESYV 421

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHAL 163
             +  ++H +     + L  +    ++ +   A  L   Q+      +YAA D      L
Sbjct: 422 LHSTASRHNMDSLALKYLQRSTISYEEVAGKGAKQLPFNQVPIDKATRYAAEDADICLQL 481

Query: 164 RLQFTEKLQRL 174
              F  +LQ+ 
Sbjct: 482 HHYFWPRLQQE 492


>gi|239998744|ref|ZP_04718668.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae 35/02]
 gi|240014337|ref|ZP_04721250.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI18]
 gi|240080968|ref|ZP_04725511.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA19]
 gi|240121900|ref|ZP_04734862.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID24-1]
 gi|240123269|ref|ZP_04736225.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
 gi|268594593|ref|ZP_06128760.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268597081|ref|ZP_06131248.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|268547982|gb|EEZ43400.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268550869|gb|EEZ45888.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 255

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 9   LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 69  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLRERLYGLPD 217


>gi|194098334|ref|YP_002001392.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|268598740|ref|ZP_06132907.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
 gi|193933624|gb|ACF29448.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|268582871|gb|EEZ47547.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
          Length = 264

 Score = 42.7 bits (100), Expect = 0.035,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 18  LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 78  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 226


>gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
 gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
          Length = 702

 Score = 42.3 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 58/202 (28%), Gaps = 70/202 (34%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI--IRIAAGQKNAPNLVGMLVDEK 74
              +  +  DTET GL P          S GD  V I  +RI  G+        MLVD K
Sbjct: 504 LDRLHYVVFDTETTGLSP----------SAGDEIVQIAAVRIVGGRILTGETFNMLVDPK 553

Query: 75  R-------------------------------------EKIFHYGRFDIAVLF---YTFG 94
           R                                       + H   FD+  L       G
Sbjct: 554 RPIPPESIPFHGITDAMVAGKPTIDTVLPQFRSFVSGAVLVAHNAAFDLKFLKMKERAAG 613

Query: 95  VRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYA 153
           V    PV  T + SR+       H L    +  LGI +                     A
Sbjct: 614 VTFDCPVLDTMLLSRMLLGNDGDHTLDGIAQR-LGIAVVDRHT----------------A 656

Query: 154 ASDVVHLHALRLQFTEKLQRLG 175
             D +   A+ L+  E L+  G
Sbjct: 657 LGDSLVTAAVFLRMIEMLRDQG 678


>gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437]
          Length = 1099

 Score = 42.3 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 62  NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF---GVRV--RPVFCTKIASRLTR 111
           +AP L  +L       E    + H  RFD+  L       G +    PV  T    R   
Sbjct: 477 DAPELSEVLPRYLEFIEGTVLVAHNARFDMGFLQAACKKTGCQPVDHPVLDTLELGRFLY 536

Query: 112 TYTNQHGLKDNLKELLGINISKAQQS 137
                H L    K+   I +++  ++
Sbjct: 537 PRLKNHRLNTLCKQF-DIELTQHHRA 561


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score = 42.3 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 17/126 (13%)

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQ 116
              K    L  +  D   +K  H G+  I +L    G+ +R + F T IA+ L    ++ 
Sbjct: 371 PPDKILEILKTICEDGNIKKYCHNGKETIRLLHRN-GITLRQLAFDTMIAAYLLNPASSN 429

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
             L+D   E L   +             L   Q          +  L      KL+  G+
Sbjct: 430 QDLEDISLEHLNAVLPGED-------RKL-PAQ-------AHCIMELAQLLDNKLKLYGQ 474

Query: 177 SDLATS 182
             L   
Sbjct: 475 DRLFYE 480


>gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4]
 gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4]
          Length = 956

 Score = 42.3 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 56/187 (29%), Gaps = 33/187 (17%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG-------------QKN 62
                    +DTET  +  R+  L  +  +        I +                   
Sbjct: 355 LLASAPHFVIDTETTSVYWRQAELVGLSFAVQAHEAYYIPLTHSLEGDELTEKQLDRDTV 414

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVR------VRPV-FCTKIASRLTRTYT 114
              L  +L +    KI  + ++D  +L  Y   +              T +AS +     
Sbjct: 415 LVRLKSILENSSIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAAV 474

Query: 115 NQHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQL------QYAASDVVHLHALRL 165
            +HG+ D  +  L           D     A  +S +Q+       YA  D    + L  
Sbjct: 475 TRHGMDDLARHYLQTQ---TISFEDVAGKGAKQVSFDQVAIDIASDYACEDADITYQLFE 531

Query: 166 QFTEKLQ 172
            F++KL 
Sbjct: 532 LFSQKLA 538


>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
 gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
          Length = 1442

 Score = 42.3 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 416 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHDGE-IIDKFERFSNPHERLSETI 474

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 475 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 577 ATAYIFIKMVQQMKELG 593


>gi|153799363|gb|ABS50441.1| DNA polymerase I [Enterococcus phage F4]
          Length = 299

 Score = 42.3 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-RPVFCT 103
              DG+   + IA  +     +  +   +K   ++H   FD+ +   + G+    PV  T
Sbjct: 64  REEDGSPSHLNIANVKWAEEGIKRVFESDKAT-VWHNATFDMGLAKASLGIAPRTPVHDT 122

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINIS 132
            I   L       + LK      L I   
Sbjct: 123 LILMHLLDEDLPSYQLKVLATRFLNIPSD 151


>gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
 gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
          Length = 910

 Score = 42.3 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105
           DG       A     +       L D+ R K  H  +  +  L    G  V  +   T++
Sbjct: 374 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAGLTCDTEL 432

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           AS L       H   D ++  L + + + + +SD
Sbjct: 433 ASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSD 466


>gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
          Length = 892

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K  H  +  +  L             T++A
Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 415

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + + + +SD
Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSD 448


>gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
          Length = 892

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K  H  +  +  L             T++A
Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 415

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + + + +SD
Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSD 448


>gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
 gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
          Length = 532

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 68/213 (31%), Gaps = 50/213 (23%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSP-----GDGTVDI-------- 53
           D  +  AA     + VD ET G   +RDR+    +V++ P      +  +D         
Sbjct: 21  DAQSLAAALSRPIVFVDLETTGADAQRDRITEIGVVEVGPDGIVEWETLLDPGMSIPPFI 80

Query: 54  -------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVLFYTF---GVRVRP-V 100
                    +  GQ    +L   L +  + R  + H  RFD   L   F   GV  R  V
Sbjct: 81  QRMTGISDDMVRGQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFRADV 140

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            CT   SR       +HGL   +                     L+ +    A +D   L
Sbjct: 141 LCTVRLSRSLFPSVERHGLDALIARFG-----------------LTPKGRHRALADAELL 183

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNFLMDRAEL 193
                +           +L  +    L+ RA L
Sbjct: 184 WQFWQKIHATYS----VELVEAAVRTLVRRASL 212


>gi|167945573|ref|ZP_02532647.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 161

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 72  DEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
           D +++K+    ++D++VL    G+ +R + F T + S +  +  ++H +    K+ L  +
Sbjct: 1   DPEQKKVGQNLKYDMSVLARY-GIELRGIAFDTMLESYVLDSTASRHDMDSLAKKYLHYD 59

Query: 131 ISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRL 174
               +  +      L+ +Q+       YAA D      L      +LQ  
Sbjct: 60  TIHFEDVAGKGKKQLTFDQIPLESAAPYAAEDADITLRLHQTLWPRLQAE 109


>gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
          Length = 892

 Score = 42.3 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 1/93 (1%)

Query: 48  DGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           DG       A     +       L D+ R K  H  +  +  L             T++A
Sbjct: 356 DGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAERGWEVAGLTCDTELA 415

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           S L       H   D ++  L + + + + +SD
Sbjct: 416 SYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSD 448


>gi|308481970|ref|XP_003103189.1| hypothetical protein CRE_26689 [Caenorhabditis remanei]
 gi|308260294|gb|EFP04247.1| hypothetical protein CRE_26689 [Caenorhabditis remanei]
          Length = 89

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 115 NQHGLKDN--LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +H L       + + + ISK +  S+W    L D+++QYAA D V LH +
Sbjct: 34  QRHPLLSLQAAADRIRVPISKTETMSNWCGPQLRDDKIQYAAMDAVVLHNI 84


>gi|240016771|ref|ZP_04723311.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA6140]
 gi|240112673|ref|ZP_04727163.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
          Length = 255

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 9   LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 69  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 217


>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1437

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 54/198 (27%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------- 52
           P +   +    +  D ET GL  + D+   L  V++  G+  +D                
Sbjct: 412 PTDRILKDATYVVFDVETTGLSNQYDKIIELAAVKVHDGE-IIDKFERFSNPHERLSDTI 470

Query: 53  ----------IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL-----FYTFGVRV 97
                     ++               + D     + H   FD+  +         G   
Sbjct: 471 KNLTHISDDMLVDAPEIDDVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERAGLGNYT 528

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
             V  T   SR   T   +HGL    K+  G+ +++  +                A  D 
Sbjct: 529 NGVIDTLELSRTINTEFGKHGLNFLAKKY-GVELTQHHR----------------AIYDT 571

Query: 158 VHLHALRLQFTEKLQRLG 175
                + ++  ++++ LG
Sbjct: 572 EATAYIFIKMLKQVEELG 589


>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 942

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 15/164 (9%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA--------AGQKNAPNLVGMLVDEKR 75
           AVDTET  L      L  + LS   G    I +A                +   L     
Sbjct: 370 AVDTETTSLDAFAAELVGISLSVKPGEACYIPVAHRNGEAQLDRDLVLARMKSWLESATH 429

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            K+    ++D  +           VF T + S +  ++   H +    +  LG+   + +
Sbjct: 430 LKVGQNLKYDSHIFANYGITLKGVVFDTLLESYVLESHLP-HNMDSLAERHLGMKTIRYE 488

Query: 136 QSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
           +        +  +Q+       YAA D      L L+   ++Q 
Sbjct: 489 EVCGKGVHQIGFDQVDLKIATDYAAEDADITLRLHLELWPQIQE 532


>gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 619

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 63/225 (28%), Gaps = 70/225 (31%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
            +H G +  E  +     +A D ET GL P + DR  ++Q+         +RI  G+  +
Sbjct: 414 HLHAGGLTNEKLSDLT-FVAFDCETTGLRPDQGDR--LIQVGA-------VRIGQGRVLS 463

Query: 64  PNLVGMLVDEKR----------------EK-------IF--------------HYGRFDI 86
                 L+D                    K       +               H   FD+
Sbjct: 464 GESFERLIDPGIPIPAQSMAYHGISNDMVKGKPPLAVVLPQFAAFAGASALAGHNVAFDL 523

Query: 87  AVLFYTFG----VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             L    G       +PV  T I + L     +   L+     L                
Sbjct: 524 KFLHAAQGETGIALRQPVLDTMILAALLDPGYD-LSLEAVAGRL--------------GV 568

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
             L       A SD +    +  +    L+  G   L  +C   L
Sbjct: 569 PPLPHRS---ALSDALVTAEILARLIAPLEARGIRTLGQACQASL 610


>gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 984

 Score = 42.3 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 54/176 (30%), Gaps = 35/176 (19%)

Query: 22  AIAVDTETLGLMPRRDRL-------CIVQLSPGDGTVDIIRIAAGQ-------KNAPNLV 67
            +A DTET  L PR   L        +            I IA  Q            L 
Sbjct: 394 PVAWDTETSDLKPRNAELVGIGCCWGL-----EATDTAYIPIAHNQGQNLDQQTVLEALR 448

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
            +L  ++  K+    +FD  VL          V  T +AS +     N H L    +   
Sbjct: 449 PILERDRYPKVLQNVKFDRLVLRTQGIKLAGVVMDTMLASYVLNP-DNSHNLNSLTERYF 507

Query: 128 ---------GINISKAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173
                     + I K +        +LS + +  Y    V     L  +  EKL+ 
Sbjct: 508 PQIQLKSYKDLKIPKGKT-----IAELSSKTVANYCGMQVYATFKLVPKLREKLEA 558


>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
 gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
          Length = 1468

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 48/158 (30%), Gaps = 34/158 (21%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
           P          +  D ET GL    D    L  V++  G                    I
Sbjct: 443 PEHRLLADATYVVFDVETTGLSTAYDTIIELAAVKIKDGHVIDKYESFANPHHPLSATTI 502

Query: 55  RIAAGQKN----APNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVR--VRP 99
            +     +    AP +  +       + +    + H   FDI  L   +  FG+     P
Sbjct: 503 ELTGITDDMVRHAPEVEQVIKEFHAFIGDGIV-VAHNASFDIGFLYTGYKKFGLEGTTHP 561

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           V  T   +RL       H L    K+   I +++  ++
Sbjct: 562 VIDTLELARLLYPTMKNHRLNTLCKKF-NIELTQHHRA 598


>gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
 gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
          Length = 877

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS----------KAQQSSDWSADDLSDEQ 149
           +F   IA+ L     N +   D  +E LG+N+           K +  SD    ++ +  
Sbjct: 391 IFDISIAAYLLNPLQNTYDYDDIAREYLGMNVPAFDEIFPKTKKNETPSD----EIPENI 446

Query: 150 LQYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           L+YA  +    +  +   TEKL+     D+ 
Sbjct: 447 LKYACYNAYVAYKAKDALTEKLKETEMLDIY 477


>gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
 gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
          Length = 867

 Score = 42.3 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 16/118 (13%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           L  ++ D+  +K+ H G+           + ++   F T IA+ L  +  +++ + + + 
Sbjct: 366 LKNLMEDDNVKKVIHDGKN-FVTFLNKNQIEIKGFDFDTAIAAYLIDSSKSKYEILELVN 424

Query: 125 ELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             +G N               S+     A     +L  +  +  E L +     L   
Sbjct: 425 HYIGDN-------------PNSEGSNIKAIL-CSYLPMVYEKLKENLHKENMDQLYYE 468


>gi|291044082|ref|ZP_06569798.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|291012545|gb|EFE04534.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
          Length = 264

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 18  LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 77

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 78  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 137

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 138 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 178

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 179 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 226


>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1437

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 34/158 (21%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGT--------------VDIIRI 56
           E A    + I  D ET GL    ++   L  V++  G                   I ++
Sbjct: 413 EAALATAEYIVFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYHIQQL 472

Query: 57  AAGQK----NAPNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGV-----RVRPVF 101
                    +AP L   L +      +    + H  RFDI  +              PV 
Sbjct: 473 TNINDEMVKDAPELEPKLREFIDFIGDSIL-VAHNARFDIGFIQANLKSIGMPDVTNPVL 531

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
            T   +R        H L     +   +++    ++ D
Sbjct: 532 DTLELARFLHPTMKNHRLNTLSAKY-KVSLDNHHRAVD 568


>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
 gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
          Length = 1438

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDQIIELAAVKVKDGE-IIDKFERFSNPNEKLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
 gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
          Length = 1054

 Score = 42.3 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 37/159 (23%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
           V +  + + +         L  +   K++H   FD  VLF   G+ V+ +   T   +RL
Sbjct: 381 VWVDNLDSAEGTLQLFKEFLESKNYLKVWHNYSFDRHVLFNH-GINVQGLGGDTMHMARL 439

Query: 110 ---TRTYTNQHGLKDNL-----------KELLGI-NISKA---------------QQSSD 139
               R     + L+              KEL GI  + K                Q+  +
Sbjct: 440 WNTARFQNGGYSLESLTADLLLQRKKPMKELFGIPKLKKDGSKGKERIMPTVEELQRFPE 499

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +         ++Y+  D      L     +KL +    +
Sbjct: 500 FRKR-----WIRYSVYDAESTWFLHRVLQDKLDQTFWFE 533


>gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi]
 gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi]
          Length = 1085

 Score = 42.3 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 49  GTVDIIRIAAGQKNAPNLV----GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104
           G V+ +      K +P L      ++ +    KI H  ++ I +L    GV V+      
Sbjct: 496 GKVEFLDSVNILKESPILSKVRTEIMENPNILKIGHNIKYHIKMLANY-GVTVKNFDDIM 554

Query: 105 IASRLTRTYTNQHGLKDNLKELL 127
           + S +     + H + + ++ +L
Sbjct: 555 VMSYVLNCGKHGHEMDEIVENVL 577


>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
 gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1435

 Score = 42.3 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLK 120
               + D     + H   FDI  L   F     G    PV  T   +R        H L 
Sbjct: 492 FYDWMGD-SIL-VAHNASFDIGFLNVGFTKLGLGKVTNPVIDTLELARFLYPELKNHRLN 549

Query: 121 DNLKELLGINISKAQQS 137
              K+   I +++  ++
Sbjct: 550 TLCKKF-DIELTQHHRA 565


>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
 gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
          Length = 903

 Score = 42.3 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 22/206 (10%)

Query: 13  AECAARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65
               AR   A   A D ET  L      +  +  +        I +      AP      
Sbjct: 315 ENWVARLEKAELFAFDLETNNLDYIEAEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPRE 374

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119
                L  +L D +  K+    +FD  VL    G+ ++ +   + + S +  +   +H +
Sbjct: 375 QVLARLKPLLEDPRHGKVGQNLKFDCNVLANY-GIELQGIRHDSMLESYVLDSTATRHNM 433

Query: 120 KDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQR 173
                + L       +  +   A  L   Q+       YAA D      L   F  +LQ+
Sbjct: 434 DSLALKYLQRTTITYEMVAGKGAKQLPFNQVTIEKAAPYAAEDADISLQLHHCFWPRLQQ 493

Query: 174 -LGRSDLATS-CCNFLMDRAELDLLG 197
             G   L        +   + ++  G
Sbjct: 494 EEGLRQLYQELEIPLIPVLSRMERNG 519


>gi|242761340|ref|XP_002340161.1| exonuclease, putative [Talaromyces stipitatus ATCC 10500]
 gi|218723357|gb|EED22774.1| exonuclease, putative [Talaromyces stipitatus ATCC 10500]
          Length = 709

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 43/149 (28%), Gaps = 39/149 (26%)

Query: 21  DAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ----------------- 60
           + +A+D E   T G      R+ +V     DG V + ++                     
Sbjct: 329 EVLALDCEMCITEGGKSELTRISLV---NWDGEVILDKLVKPDLPIINYLTQFSGITKEM 385

Query: 61  ---------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110
                         L+ +L       + H    D+  L         P +  T I     
Sbjct: 386 LDPVTTTLADIQKELLELLTPRTIL-VGHSLNSDLTALK-----LTHPFIIDTAIIYPHP 439

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
           R    +  LK   ++ LG  I K Q   D
Sbjct: 440 RGPPLKSSLKWLCQKYLGKEIQKGQTGHD 468


>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 943

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 23/168 (13%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--------NLVGMLVDEKR 75
           AVDTET  L      L  + LS   G    I +A     A          +   L     
Sbjct: 371 AVDTETTSLDALAAELVGISLSVKPGEACYIPVAHRNGEAQLSRELVLKRMKSWLESSSH 430

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI--- 131
            K+    ++DI +      + +  + F T + S +  ++   H +    +  LG+     
Sbjct: 431 LKVGQNLKYDIHIFANY-DIHLEGIAFDTLLESYVLESHLP-HNMDSLAERHLGLKTIRY 488

Query: 132 ----SKAQQSSDWSADDLSDEQL--QYAASDVVHLHALRLQFTEKLQR 173
                K      +   DL   Q+   YAA D      L L+   ++Q 
Sbjct: 489 EEVCGKGVHQIGFDQVDL---QIATNYAAEDADITLRLHLELWPQIQA 533


>gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
 gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
          Length = 649

 Score = 42.3 bits (99), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVR 98
           S     V II +A G+K  P ++  L D+K  K  H   F+        G      +   
Sbjct: 41  STDGSEVKIIDLARGEKIPPLILSALEDDKVIKYAHNASFERICFSRFLGYPVGKYISPE 100

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNL 123
              CT   +       +  G+   L
Sbjct: 101 SWRCTMTWAAYMGLPLSLVGVGAVL 125


>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1446

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 53/198 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----------------GDGTV--D 52
           P +   R    +  D ET GL   RDR  +++++                   +  +   
Sbjct: 416 PKKLKLREATYVVFDVETTGLSAERDR--LIEIAAVKVKNGAEIDSFESYINPERPISEL 473

Query: 53  IIRIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTF---GVRVRP 99
           I R+ +   +    AP    ++ D      E    + H  +FD+  +  +F   G+  + 
Sbjct: 474 ITRLTSITDDDVRDAPVEKEVMTDFYNWLDEDDILVAHNAKFDLGFIDKSFERLGLENKN 533

Query: 100 --VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
                T   SR       +HGL +  K    + + +  +                A  D 
Sbjct: 534 NASIDTLFISRAENKEAKRHGLSNLAKMY-KVRLVQHHR----------------AIYDT 576

Query: 158 VHLHALRLQFTEKLQRLG 175
                + ++   +L  LG
Sbjct: 577 KATAEIFIKMLNQLYALG 594


>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
          Length = 1438

 Score = 42.3 bits (99), Expect = 0.045,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDQIIELAAVKVKDGE-IIDKFERFSNPHEKLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|326431819|gb|EGD77389.1| hypothetical protein PTSG_08484 [Salpingoeca sp. ATCC 50818]
          Length = 656

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 21/132 (15%)

Query: 31  GLMP--RRDR--LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI 86
            L          LC+   S G  T  I       K   +L  +L  +   K+ +  R D+
Sbjct: 52  RLRTSEYSPIASLCL---SSGSNTF-IFTCVESGKMPASLQLLLTHQDYTKVGYNVREDL 107

Query: 87  AV-LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ------QSSD 139
            V ++  FG+ + PV        L      + G K+            +       + SD
Sbjct: 108 IVKMYVDFGIELGPVHD------LHDILEQETGCKNLFAAFRREFPGSSYYYEPSLRFSD 161

Query: 140 WSADDLSDEQLQ 151
           W  + L+++Q+ 
Sbjct: 162 WWQEQLTEDQVA 173


>gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
 gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
          Length = 1464

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 418 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNIIAEFDEFINPGHPLSAFT 474

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  LV +L +     +    + H   FD+  +      +      +P
Sbjct: 475 TELTGITDDHVKNAKPLVQVLKEFQEFCKDTVLVAHNASFDVGFMNANYERHGLPKITQP 534

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 535 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 566


>gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
 gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
          Length = 1178

 Score = 42.3 bits (99), Expect = 0.046,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 50/174 (28%)

Query: 42  VQLSP---GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           VQ +    G   + +  +  G+           D   +K++H   FD  V+    G++V 
Sbjct: 465 VQAADFGNGKTCIWVDVLDGGRGVLMEFAPFFEDPSIKKVWHNYSFDNHVIENY-GIKVA 523

Query: 99  PV-FCTKIASRL---TRTYTNQHGLKDNL---------------------KELLG----- 128
                T   +RL   +R     + L+                        K + G     
Sbjct: 524 GFRADTMHLARLWDSSRKIDGGYSLEGLTNDRRVMDTVPEDLPKPGKISMKTIFGRKKVR 583

Query: 129 --------INIS--KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                   ++I   K  Q  D    +L    + Y++ D +    L      KL+
Sbjct: 584 KDGSEGKVVSIDPVKELQRED---REL---WICYSSLDSMSTLRLYESLKRKLE 631


>gi|260440770|ref|ZP_05794586.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI2]
          Length = 255

 Score = 41.9 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 59/229 (25%)

Query: 11  IPAECAARYVDAIAV-DTETLGLMPRRDRL---CIV---QLSPGDGTVDIIRIAAGQK-- 61
           +  +   R+   +AV D E+ G     DR+    +V   Q         +       K  
Sbjct: 9   LLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFV 68

Query: 62  ------------NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPV 100
                       +AP    +        K    + H  RFD   L + F   G+    P 
Sbjct: 69  AELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPA 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR       +H L   ++  LGI +    +                A +DV   
Sbjct: 129 LCSVQLSRRLYPQFYKHSLDGIIER-LGIVVEDRHR----------------AMADVS-- 169

Query: 161 HALRLQFTEKLQRLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
            AL       L   G  + +  C            L +R    L G  +
Sbjct: 170 -ALCDYLEYSLSAHGLEEWSRQCFRLTNPKLLPAALPERLRERLYGLPD 217


>gi|332969120|gb|EGK08156.1| DNA-directed DNA polymerase I [Psychrobacter sp. 1501(2011)]
          Length = 1018

 Score = 41.9 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 50  TVDIIRIAAGQKN----APNLVGMLVDEKREKIFHYGRFDIAVLFYT---FGVRVRPV-F 101
             ++  + A Q +       L  +L + +  KI  + ++D  VL           +    
Sbjct: 464 NAEVDPLIAKQLDRDMVLTKLKPILENPEIGKIGQHLKYDAHVLRKYGIELNTSPKNWEM 523

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELL 127
            T +AS +      +H + D  +  L
Sbjct: 524 DTMLASYVLNAAATRHSMDDLARHYL 549


>gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
 gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
          Length = 1464

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 42/164 (25%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP---------GDGTVD 52
            I  +E D+           +  D ET GL     D   ++Q++           +    
Sbjct: 411 PITYNEVDLD----LNEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIEEFDEF 463

Query: 53  IIR--------------IAAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89
           I                     + A  LV +L +     E    + H   FD+  +    
Sbjct: 464 IDPGHPLSAFTTQLTGITNEHVRGAKPLVQVLKEFQAFCEGTVLVAHNATFDVGFMNANY 523

Query: 90  -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
             +      +PV  T   +R       +HGL    K   G+ + 
Sbjct: 524 ERHGLPKITQPVIDTLEFARNLYPDFKRHGLGPLTKRF-GVGLE 566


>gi|255573515|ref|XP_002527682.1| 3-5 exonuclease, putative [Ricinus communis]
 gi|223532913|gb|EEF34681.1| 3-5 exonuclease, putative [Ricinus communis]
          Length = 211

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 19/139 (13%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR----FDIAVLFYTFGVRV 97
           +QL  G     I ++    +   +L   L +        +       D+  L   +G+ V
Sbjct: 78  LQLCIGS-RCLIYQLIHSPRIPQSLFDFLKNSSYV----FAGVGIESDVEKLVEDYGLSV 132

Query: 98  RPVFCTK----IAS-RLTRTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQL 150
             V        +A+  L        GLK+ +K++LG  I   K    S W +  LS +Q+
Sbjct: 133 GNV---MELRRVAAESLGVKELKNAGLKELVKQVLGKEIQKPKRVTMSRWDSMWLSHDQV 189

Query: 151 QYAASDVVHLHALRLQFTE 169
           QYA  D      +    T+
Sbjct: 190 QYACLDAFVCSEIGRILTQ 208


>gi|159470079|ref|XP_001693187.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277445|gb|EDP03213.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 931

 Score = 41.9 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 21/89 (23%)

Query: 85  DIAVLFYTFGVRVRPVFCTKI------ASRLTRTYT------NQHGLKDNLKELLGINIS 132
           D+++L   +G+ + P+  T++      A+ L   YT       + GL   L  + G+ + 
Sbjct: 807 DVSLLHTQYGILLGPLVDTQLVYGTAQATWLGLPYTCRKLLAPRAGLGAMLGGV-GLRLP 865

Query: 133 -----KAQQSSD---WSADDLSDEQLQYA 153
                K+    D   W    L+   ++YA
Sbjct: 866 YKADVKSLYRKDRNFWKQRPLTPAMIEYA 894



 Score = 34.6 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 16/48 (33%)

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFL 187
           WS   L+ E ++YA          +      L  L R     + C  L
Sbjct: 548 WSQRPLTREMIKYAVQGAAAAEEAQDHVDLWLPVLDRRHAYAAECQAL 595


>gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
 gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
          Length = 1464

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 42/164 (25%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP---------GDGTVD 52
            I  +E D+           +  D ET GL     D   ++Q++           +    
Sbjct: 411 PITYNEVDLD----LNEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIEEFDEF 463

Query: 53  IIR--------------IAAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89
           I                     + A  LV +L +     E    + H   FD+  +    
Sbjct: 464 IDPGHPLSAFTTQLTGITNEHVRGAKPLVQVLKEFQAFCEGTVLVAHNATFDVGFMNANY 523

Query: 90  -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
             +      +PV  T   +R       +HGL    K   G+ + 
Sbjct: 524 ERHGLPKITQPVIDTLEFARNLYPDFKRHGLGPLTKRF-GVGLE 566


>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
 gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 1458

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 49/181 (27%)

Query: 22  AIAVDTETLGLMPRRDRL----------CI----VQLS--PGDGTVDII---------RI 56
            +  D ET GL P  D++           +    +Q+   P +   D I          +
Sbjct: 421 YVIFDIETTGLSPYYDKIIEFGAIKYHKGVQVESIQMFINPEEKISDKIFAITKISNEDV 480

Query: 57  AAGQKNAPNLVGM--LVDEKREKIFHYG-RFDIAVL-----FYTFGVRVRPVFCTKIASR 108
               K    LV +   + +    I H G +FD+  L          +   P+  T   SR
Sbjct: 481 KDALKIKEALVKIKDFIGDSVL-IAHNGIKFDLPFLNCKLEENKMDIIKNPLIDTLQISR 539

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                 + H L    ++     I   +             Q   A  D  +L  +  +  
Sbjct: 540 AINEQIHGHSLGVIARKY---KIDYDET------------QAHRADKDAEYLLNIWKRML 584

Query: 169 E 169
           E
Sbjct: 585 E 585


>gi|159475607|ref|XP_001695910.1| hypothetical protein CHLREDRAFT_174455 [Chlamydomonas reinhardtii]
 gi|158275470|gb|EDP01247.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 432

 Score = 41.9 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105
           G     +L  +L +    K+ H     I  +    G  V P+  TK+
Sbjct: 309 GLDLMGSLRAVLEEPGVAKVVHGCEQVIPWVESAAGCFVSPLLDTKL 355


>gi|157265305|ref|YP_001467864.1| DNA polymerase I [Thermus phage P23-45]
 gi|156905200|gb|ABU96844.1| DNA polymerase I [Thermus phage P23-45]
          Length = 728

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 51/151 (33%), Gaps = 24/151 (15%)

Query: 1   MTTIRVHEGDI--PAECAARYVDAIAVDTETLGLMPRRDRLCI-------VQLSPGDGTV 51
           M +  V   D    A  A      +A+DTET G  P    L +       V ++      
Sbjct: 1   MRSYHVVTNDTFPLALDAIAQAPRVALDTETYGSDPFN--LYLPDFRLVGVAIATSPTEA 58

Query: 52  DIIRIAAGQKNAP----NL------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
               +            NL        +L   KR  ++H   +D  VL  T  + +   +
Sbjct: 59  WYFPVDHQDFLLRYQPANLPREAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTY 118

Query: 102 --CTKIASRLTRTYTNQHGLKDNLKELLGIN 130
              T +A  L        GLK+  K LLG+ 
Sbjct: 119 GDDTMVALHLVDENHP-LGLKEWAKTLLGLE 148


>gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
 gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
          Length = 1464

 Score = 41.9 bits (98), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 42/164 (25%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP---------GDGTVD 52
            I  +E D+           +  D ET GL     D   ++Q++           +    
Sbjct: 411 PITYNEVDLD----LNEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIEEFDEF 463

Query: 53  IIR--------------IAAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89
           I                     + A  LV +L +     E    + H   FD+  +    
Sbjct: 464 IDPGHPLSAFTTQLTGITNEHVRGAKPLVQVLKEFQAFCEGTVLVAHNATFDVGFMNANY 523

Query: 90  -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
             +      +PV  T   +R       +HGL    K   G+ + 
Sbjct: 524 ERHGLPKITQPVIDTLEFARNLYPDFKRHGLGPLTKRF-GVGLE 566


>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
 gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Anoxybacillus flavithermus WK1]
          Length = 1430

 Score = 41.9 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 27/126 (21%)

Query: 60  QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRL 109
            K+AP++  +L       +    + H   FDI  L   F     G    PV  T   +R 
Sbjct: 474 LKDAPDVEEVLEKFYHWIDDCVLVAHNATFDIGFLNAGFKKINRGKVTNPVIDTLELARY 533

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
                  H L    K+   I +++  ++              Y A    +L    +   +
Sbjct: 534 LYPELKNHRLNTLCKKF-NIELTQHHRAI-------------YDAEATGYLL---IHLLK 576

Query: 170 KLQRLG 175
           +L   G
Sbjct: 577 ELDEKG 582


>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
 gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
          Length = 1442

 Score = 41.9 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 416 PTDRVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 474

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 475 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 577 ATAYIFIKMIQQMKELG 593


>gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
 gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           sicca ATCC 29256]
          Length = 449

 Score = 41.9 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 63/201 (31%), Gaps = 56/201 (27%)

Query: 25  VDTETLGLMPRRDRL----------------------------CIVQLSPGDGTVDIIRI 56
           VD E+ G    +DR+                             +VQL  G     + + 
Sbjct: 3   VDLESTGGNLYQDRVTEIAFLRFENGRVEHYEQLINPGKPIPEFVVQL-TGITNEMVAQA 61

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GV-RVRPVFCTKIASRLTRT 112
            A  + AP+++ +L       + H  RFD   L + F   G+    P  CT   SR    
Sbjct: 62  PAFDQIAPDILPLLRGSLI--VAHNSRFDYTFLRHEFYRAGIDFAAPALCTVQLSRRLYP 119

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
              +H L   +  + GI      +                A +DV    AL       L+
Sbjct: 120 QFYKHNLDSIISRM-GIQTDDRHR----------------ALADV---LALADYLEHSLK 159

Query: 173 RLGRSDLATSCCNFLMDRAEL 193
                +   + C  LM+   L
Sbjct: 160 EKTSDEW-DNHCRTLMNPKIL 179


>gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
 gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
          Length = 878

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 29/144 (20%)

Query: 56  IAAGQKNAPNL---VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           +  G  +   L     +  D    K  H  +     L +     +  + F + +A+ L  
Sbjct: 352 LPLGAADLEILAGVRRLFADAAVAKHMHNAK---DFLRWAPDFDLANICFDSMVAAYLVN 408

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                  L+D + + L + +       D  A   +       A+D   +  L      +L
Sbjct: 409 PLAANQQLEDVVHQYLNLVLV-----PDGPAAPAT-------AAD--CIRRLYPVLRAEL 454

Query: 172 QRLGRSDLATSCCNFLMDRAELDL 195
           +            ++L DR EL L
Sbjct: 455 R--------GYELDYLFDRVELPL 470


>gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994]
 gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994]
          Length = 909

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 27/199 (13%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAG----------QKNAPNLVGMLVD 72
           IA DTET GL P +D L     S    T   + +             +  A  +  +   
Sbjct: 341 IAFDTETTGLDPSKDHLVGFSFSTDGKTGYYVPMMHSYLGVGDQVSTEAAAKAIRLIFEH 400

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
                I H  +FD+  +    GV    ++  T + + LT + +    + +  + LL   +
Sbjct: 401 R---VIGHNIKFDLHFVTRFLGVDRLSIYADTMVLAWLTDS-SRSLAMDNLSQSLLHHEM 456

Query: 132 -------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCC 184
                   K +  +  +     ++  +YA  D    + L     E+L   G  +      
Sbjct: 457 IHFKDTVKKGENFASVAI----EDACKYAGEDAYITYRLYEVLKEQLLLKGGQEALDEAF 512

Query: 185 NFLMDRAELDLLGWENVDI 203
           +       L LLG E   I
Sbjct: 513 DV-EFPFTLTLLGMEKEGI 530


>gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
 gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
          Length = 882

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 54/150 (36%), Gaps = 32/150 (21%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF---DIA----VLFYTFGVR 96
           +S G   +  I  A    +   L+  LV     K  H GRF   D+      L    G  
Sbjct: 355 ISFGKEKIYCIP-AGNGYSMEELLEALVH--VAK--HAGRFVVFDLKSSLPYLKGLEGAA 409

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS-KAQQSSDWSADDLSDEQL---QY 152
               F + +A+ L     N +G +D  +E LG+ I  K +         L ++ +    Y
Sbjct: 410 EEKCFDSIVAAYLLNPLKNDYGFEDVAQEHLGLMIDPKTE---------L-EKMVCYEAY 459

Query: 153 AASDVVHLHALRLQFTEKLQRLGRSDLATS 182
           AA       A      EKL++     L T 
Sbjct: 460 AA------FASSEVLEEKLKKEEMWKLFTE 483


>gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
 gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
          Length = 481

 Score = 41.9 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 45/139 (32%), Gaps = 36/139 (25%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVD-------IIRIAAGQKN--- 62
            +A DTET GL  + D   +VQL              T+D        I  A+ + +   
Sbjct: 277 FVAFDTETTGLSAQTDD--VVQLGAVRVLNGRVVPGETLDTYVNPGRPIPPASTEIHRVT 334

Query: 63  ------APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPVFCTKIAS 107
                 A + V +  +          + H   FD+A L             PV  T + S
Sbjct: 335 DGHVRGASDFVTVGRNFHHFARDAVLVAHNAPFDLAFLHRFADRMGVEWTHPVLDTVLLS 394

Query: 108 RLTRTYTNQHGLKDNLKEL 126
            +    T QH L      L
Sbjct: 395 AVVFGTTEQHSLDALCDRL 413


>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
 gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
          Length = 788

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 43/168 (25%)

Query: 47  GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105
           G   V +  +  G            + + +KI+H   FD  +L    G++    +  T  
Sbjct: 66  GKSRVWVDLLNGGPGILDVFRPYFENAEIKKIWHNYSFDKHILGNY-GIKAAGFYADTMH 124

Query: 106 ASRLTRTYTNQHGL--------------------KDNLKELLGINISKA----------- 134
            +RL  +     G                     K ++K+L  I   K            
Sbjct: 125 LARLWDSARGGLGYSLEALTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIP 184

Query: 135 -----QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
                Q S D       D+ + Y+A D V    L     +KLQ+    
Sbjct: 185 PVEELQTSKD--TR---DKWIYYSAHDSVCTWHLWSSLKKKLQKASWY 227


>gi|238575785|ref|XP_002387790.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553]
 gi|215448580|gb|EEB88720.1| hypothetical protein MPER_13270 [Moniliophthora perniciosa FA553]
          Length = 361

 Score = 41.9 bits (98), Expect = 0.056,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 41/193 (21%)

Query: 20  VDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKRE 76
              + +D E        D+   + ++QL+ G  T  I  +A        +  +L      
Sbjct: 24  HGHVGLDIE-WKPNRHGDQHNEVAMLQLATGTETFLI-HVAKIGHLPTIVTNLLESPLIW 81

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFC----------------TKIASRLTRTYTN----- 115
           K     + D+  L   F V +                     T I S + R   N     
Sbjct: 82  KAGVGIQEDVKKLHRDFHVSITSCVDLSMLALSIDCLQFEERTGIYSAIPRGIENTAEKH 141

Query: 116 ---------QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
                       L    K   G+ ++K    +DW   DL+ E+ +  ++D    HA    
Sbjct: 142 RTYKGHIKRAIALSKLAKSYAGMELTKNNAMTDWEKKDLTQEEKE--SNDA---HAGFAI 196

Query: 167 FTEKLQRLGRSDL 179
               LQ + R +L
Sbjct: 197 LKGLLQTM-RYEL 208


>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
 gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
          Length = 1438

 Score = 41.9 bits (98), Expect = 0.057,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 36/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PTDRVLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
            V  T   SR   T   +HGL    K+  G+ +++  ++
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHRA 567


>gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1510

 Score = 41.9 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 21/106 (19%)

Query: 78  IFHYGRFDIAVLFYT---FGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + H   FD++ +       G+   P +  T   +R+     N+  L   + + L I++  
Sbjct: 562 VAHNADFDMSFIKRNCALLGMECNPTIVDTVALARVLLPQLNRFKLDT-VAKALNISLDH 620

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
             +                A  D      + ++F EKL+  G S L
Sbjct: 621 HHR----------------AVDDAACTAEIFVKFIEKLKDRGISSL 650


>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
 gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
          Length = 1561

 Score = 41.9 bits (98), Expect = 0.058,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 49  GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTK 104
               ++         P  +  + D     + H   FD+  + +     G+   P V  T 
Sbjct: 593 NDAMVLPYPKIDVILPQFLEFVGDAAL--VAHNASFDVGFIGHYAEKQGLAFNPTVLDTV 650

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
             +RL     N+  L   + + L I+++   ++ D
Sbjct: 651 TMARLLLPNLNRFKLDT-VAKALNISLANHHRAVD 684


>gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
 gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
          Length = 1442

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 47/166 (28%), Gaps = 45/166 (27%)

Query: 12  PAECAARYVDAIAVDTETLGLMPR--------------------RDRLCIVQLSPGDGTV 51
           P +   +    +  D ET+GL                         +L    ++PG    
Sbjct: 405 PKDVLIQDETYVVYDLETMGLNSHENEIIEIGAIKLKGTRIVDKYSQL----INPGKSIP 460

Query: 52  DIIRIAAGQKN------------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR- 98
             I+   G  +             P  +    D     + H  RFDI  L          
Sbjct: 461 SKIQELTGITDDMVKDEPSIEEVLPGFLEFAGDATL--VAHNARFDIGFLTRDVKKYTNI 518

Query: 99  -----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
                 V  T   +R        +GLK   K+ LG+ +    ++ D
Sbjct: 519 KDYKPSVIDTLQWARDLLPDLRGYGLKSVTKK-LGVALENHHRAVD 563


>gi|255930624|ref|XP_002556870.1| Pc09g00030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581486|emb|CAP79250.1| Pc09g00030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 534

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 20/101 (19%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR--------LTRTYTNQH 117
           L   + D     + H  ++D+ VL    G+    V  + I +          T+  T   
Sbjct: 363 LWEFMDDSTVL-VGHSLQYDLEVL----GISHAKVVDSAILTAETVYSSIPSTKPLTRNW 417

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
           GLK   K+  G+NI    Q+SD   + L D    YAA DVV
Sbjct: 418 GLKTLAKDFXGLNI----QTSDRGHNALEDA---YAARDVV 451


>gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20]
 gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20]
          Length = 894

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 11/105 (10%)

Query: 34  PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---VGMLVDEKREKIFHYGRFDIAVLF 90
               +L  + +SP +     +                 +L D   +K  H    D+    
Sbjct: 337 SFSQKLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGH----DLKNFI 392

Query: 91  YTF---GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
                 G+    + F T I + +       + + +  +E L +++
Sbjct: 393 VYLNNRGIDFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSV 437


>gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum NCTC 2916]
 gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum NCTC 2916]
          Length = 1432

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108
           +       K  P  +  + D     + H   FD++ +        +     V  T   SR
Sbjct: 477 VDDKETIDKILPRFIDFIGDS--VVVAHNASFDVSFINKNCKDLKIEFENSVMDTVTLSR 534

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
                  +H L + + + LGI++    ++ D
Sbjct: 535 FLFPELKRHKL-NVIAKHLGISLENHHRAVD 564


>gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313]
          Length = 894

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 11/105 (10%)

Query: 34  PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---VGMLVDEKREKIFHYGRFDIAVLF 90
               +L  + +SP +     +                 +L D   +K  H    D+    
Sbjct: 337 SFSQKLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGH----DLKNFI 392

Query: 91  YTF---GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
                 G+    + F T I + +       + + +  +E L +++
Sbjct: 393 VYLNNRGIDFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSV 437


>gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
 gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
          Length = 896

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 27/156 (17%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTN 115
           Q+    L  +   +  EK  H    D+  L+      G+ +   +F T IA+ +     +
Sbjct: 371 QEALNELREIFESKDIEKYGH----DLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRS 426

Query: 116 QHGLKDNLKELLGINI-------SKAQQSSDWSADDLSDEQ----LQYAASDVVHLHALR 164
            + + +  ++ L  +I        K           L  EQ     +  A+ V  ++ L 
Sbjct: 427 TYTISELYEDKLKQSITPVEILYDKH------GKR-LQQEQDISSSEVCAAAVNAIYVLI 479

Query: 165 LQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWE 199
            +    ++  G+ +L        +   A+++L G++
Sbjct: 480 QKLRPIIRDNGQDELYYEIELPLVEVLADMELRGFK 515


>gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A]
 gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A]
          Length = 986

 Score = 41.9 bits (98), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 45/139 (32%), Gaps = 23/139 (16%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--------------- 64
              IA+DTET  L P +  L  +    G+   DI+ I  G +N                 
Sbjct: 384 TKPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHQNKEGDLIKINQINQLKIE 443

Query: 65  ----NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
                L       +  K     ++D  +L     +    V  T +A  +    T +H L 
Sbjct: 444 EVIFALQDWFSSNENHKTLQNAKYDRLILLRHGIILNGVVIDTLLADYIFDA-TLKHSLD 502

Query: 121 DNLKELLGINISKAQQSSD 139
           +      G    K +  SD
Sbjct: 503 EIAYREFGF---KPKSFSD 518


>gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
 gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
          Length = 608

 Score = 41.9 bits (98), Expect = 0.060,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 14/131 (10%)

Query: 12  PAECAAR--YVDAIAVDTET-----LGLMPRRDR--LCIVQLSPGDGTVDIIRIAAGQKN 62
           PA  AA       + +D ET      G         L +VQL        +  +   Q+ 
Sbjct: 27  PAAMAADLDGEPILGLDVETRALPDTGPRHFGPDAGLRLVQLGTATVAWVLDPLDPAQRA 86

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLTRT-YTNQHGLK 120
           A  +  +L D  R  + H   FD   ++    +   + V  T + S+L        HGLK
Sbjct: 87  A--IAAVLGDPGRRFVTHT-SFDTLAVWSALAIGLGQRVADTHLISKLVDPDERAGHGLK 143

Query: 121 DNLKELLGINI 131
                 L   +
Sbjct: 144 TLTARHLDDGL 154


>gi|169346903|ref|ZP_02865851.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
 gi|169296962|gb|EDS79086.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
          Length = 642

 Score = 41.9 bits (98), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 24/113 (21%)

Query: 69  MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLT-RTYTN-----QHGLKDN 122
           +  +E   K+ H   F+ + L+    V   PVF T + S LT +++       + GLK  
Sbjct: 93  VFHNESLIKVAHNIAFESSFLYEYGIVIKEPVFDTMLGSMLTFKSFGEFRTLRECGLKLL 152

Query: 123 LKELLGINISKAQQSS--------DWSADDLSDEQLQ---YAASDVVHLHALR 164
            KE+   ++      S        D    +L  E  +   YA +D  +   L 
Sbjct: 153 AKEIFNEDLP---SFSHVVNGTHFD----NLHSEHKETVRYACADSDYALRLY 198


>gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
 gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
          Length = 876

 Score = 41.5 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAV---LFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121
              +  +E   K+     +D+ V   + Y  G+R   + F  KIA+ L  +  + + LKD
Sbjct: 375 FKLLFENEGISKV----GYDVKVPCSILYKMGIRFLKLEFDIKIAAYLIDSSRSDYELKD 430

Query: 122 NLKELLGINISKA 134
            +++  G+ IS+ 
Sbjct: 431 IIRQYTGVEISED 443


>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
 gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
          Length = 1449

 Score = 41.5 bits (97), Expect = 0.065,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 53/198 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD--GTVDIIRIA------------ 57
           P E   +    +  D ET GL   RDR  +++++        +I                
Sbjct: 419 PKELKLKDATYVVFDVETTGLSAERDR--LIEIAAVKVKNGAEIDSFESYINPQRPISEL 476

Query: 58  ---------AGQKNAPNLVGMLV------DEKREKIFHYGRFDIAVL---FYTFGVRVRP 99
                       K+AP    ++       D+    + H  +FD+  L   F   G+  + 
Sbjct: 477 ITRLTSITNDDVKDAPLEKEVMTNFYNWLDKDDILVAHNAKFDLGFLDTCFERLGLENKN 536

Query: 100 --VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
                T   SR       +HGL +   +L  + + +  +                A  D 
Sbjct: 537 NASIDTLFVSRAENKEAKRHGLSNL-AKLYKVRLVQHHR----------------AIYDT 579

Query: 158 VHLHALRLQFTEKLQRLG 175
                + ++  ++L  LG
Sbjct: 580 KATAEIFVKMLDQLYELG 597


>gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032]
 gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032]
          Length = 899

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 25/78 (32%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                 + +   L G L DE R K+ H  +  +                T+IA+ L R  
Sbjct: 365 DPSRLDESDEAALAGWLADETRPKVLHDSKPAVLAFAAHGWTLAGIARDTQIAAYLARPD 424

Query: 114 TNQHGLKDNLKELLGINI 131
              + L D     L   +
Sbjct: 425 QRSYDLTDLALRYLHREL 442


>gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 591

 Score = 41.5 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101
           + GD  V +  + AG+     L   + D      FH   FD  VL +        V    
Sbjct: 36  AIGDEPVSVWDLTAGEPIPGRLQKAIADPDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWR 95

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            T + + L        G    L E+LG+   K
Sbjct: 96  DTMVQA-LAHGLPGALG---ALCEVLGVPQDK 123


>gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
 gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
          Length = 986

 Score = 41.5 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 26/147 (17%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG--------- 68
             +  +A+DTET  L P    L  + +  G+G  D+  I  G      L+          
Sbjct: 383 DRLKPVALDTETTALNPFCAELVGLGVCWGEGLQDLAYIPIGHHPPAELLEAEAACQLPL 442

Query: 69  ---------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
                     L      K     ++D  +L          V  T +A    R    +HGL
Sbjct: 443 EAVLKAIAPWLASNDHPKALQNAKYDRLILLRHGLALEGVVMDTLLA-DYLRDAAAKHGL 501

Query: 120 KDNLKELLGIN-------ISKAQQSSD 139
           +   +    I        + K Q  +D
Sbjct: 502 EVMAEREFKITPTGFSELVGKGQTFAD 528


>gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9]
 gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus
           thermophilus LMD-9]
 gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03]
          Length = 1464

 Score = 41.5 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 38/155 (24%)

Query: 12  PAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDI-IRIAA 58
                 +    +  D ET GL     D   ++Q++             D  +D    ++A
Sbjct: 416 SENLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIVEQFDEFIDPGYPLSA 472

Query: 59  GQKN-----------APNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRV 97
                          A  LV +L +     +    + H   FD+  +      +      
Sbjct: 473 FTTELTGITDNHVKGAKPLVQVLQEFQEFCKGAVLVAHNATFDVGFMNANYERHQLPTIS 532

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           +PV  T   +R       +HGL    K   G+ + 
Sbjct: 533 QPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566


>gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311]
 gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG
           18311]
          Length = 1464

 Score = 41.5 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 38/155 (24%)

Query: 12  PAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDI-IRIAA 58
                 +    +  D ET GL     D   ++Q++             D  +D    ++A
Sbjct: 416 SENLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIVEQFDEFIDPGYPLSA 472

Query: 59  GQKN-----------APNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRV 97
                          A  LV +L +     +    + H   FD+  +      +      
Sbjct: 473 FTTELTGITDNHVKGAKPLVQVLQEFQEFCKGAVLVAHNATFDVGFMNANYERHQLPTIS 532

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           +PV  T   +R       +HGL    K   G+ + 
Sbjct: 533 QPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566


>gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066]
 gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus
           CNRZ1066]
          Length = 1464

 Score = 41.5 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 38/155 (24%)

Query: 12  PAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDI-IRIAA 58
                 +    +  D ET GL     D   ++Q++             D  +D    ++A
Sbjct: 416 SENLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIVEQFDEFIDPGYPLSA 472

Query: 59  GQKN-----------APNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRV 97
                          A  LV +L +     +    + H   FD+  +      +      
Sbjct: 473 FTTELTGITDNHVKGAKPLVQVLQEFQEFCKGAVLVAHNATFDVGFMNANYERHQLPTIS 532

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           +PV  T   +R       +HGL    K   G+ + 
Sbjct: 533 QPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566


>gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 958

 Score = 41.5 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 47/151 (31%), Gaps = 35/151 (23%)

Query: 21  DAIAVDTETLGLMPRRDRL------------------CIV----------QLSPGDGTVD 52
             +A+D ET G  P  DRL                   ++          Q   G     
Sbjct: 5   SFVAIDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRLIDPGCPVPQRIQHLTGIHPAM 64

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASR 108
           +      ++  P+L   L D     + H   FD+A L   F           + T   +R
Sbjct: 65  LAGKPRIEEVVPDLASFLGD--LPLVAHNAPFDVAFLQAAFARAGRSLPNWSYDTAELAR 122

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           +       H L     ELLG+ +    ++ D
Sbjct: 123 VALPLARNHRLATL-AELLGLPLEHHHRAED 152


>gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
 gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C150]
          Length = 1464

 Score = 41.5 bits (97), Expect = 0.070,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 38/155 (24%)

Query: 12  PAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDI-IRIAA 58
             E   +    +  D ET GL     D   ++Q++             D  +D    ++A
Sbjct: 416 SEELELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIIEQFDEFIDPGYPLSA 472

Query: 59  GQKN-----------APNLVGMLVDEKR-----EKIFHYGRFDIAVL-----FYTFGVRV 97
                          A  L+ +L + +        + H   FD+  +             
Sbjct: 473 FTTELTGITDNHVKGAKPLLQVLQEFQVFCQGTVLVAHNATFDVGFMNANYERNQLPTIS 532

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           +PV  T   +R       +HGL    K   G+ + 
Sbjct: 533 QPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566


>gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
 gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
          Length = 905

 Score = 41.5 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 44  LSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
           ++   G    + +      +   L   L D  + K  H  +  +  L    G+ +  +  
Sbjct: 360 IADESGRAAYVDLTTLAPEDEQALAEWLADVTKAKALHDAKGPMHALAAR-GLTLAGLTN 418

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            T IA+ L R     +G +D L     I + +  + +
Sbjct: 419 DTAIAAYLVRPDQRSYGFEDLLLRYCHIELPETSKQA 455


>gi|71404664|ref|XP_805020.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70868260|gb|EAN83169.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 447

 Score = 41.5 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 26/163 (15%)

Query: 16  AARYVDAIAVDTETLGLMPRRD----RLC-IVQLSPGDGTVDIIRIAAGQKNA----PNL 66
            A  V+ +AV    + L         RLC IV ++  +  +D+  +AA          NL
Sbjct: 168 CAHSVEPVAV----VQLSTFSVTFVIRLCDIVCMTRPENCIDVSEVAAVSSTLGVVLDNL 223

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIA--SR-LTRTYTNQHGLKDN 122
           + +L +++  K+      D   L + +   R+ P  C ++A  +R L  T  +  GL+  
Sbjct: 224 ISLLANKRVAKVGVGIIGDQEKLQHDYTAFRLCP--CVELAVLARHLFPTAEDVMGLRSL 281

Query: 123 ---LKELLGINISKAQ--QSSDWSAD--DLSDEQLQYAASDVV 158
                      + K      SDW +    LS  QL+YAA+D  
Sbjct: 282 KDFAARFASRKLKKDILVTCSDWGSSLGALSPLQLEYAAADAE 324


>gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
 gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
          Length = 968

 Score = 41.5 bits (97), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 46/164 (28%), Gaps = 47/164 (28%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL-- 109
           +  +  G+           +   +K++H   FD  V+    G+++      T   +RL  
Sbjct: 247 VDTLRGGEGVWEVFKEYFENPNVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARLWN 306

Query: 110 -TRTYTNQHGLKDN---------LKELLGI------------------NISKAQQ----- 136
             R     + L+             E+LG                    + K        
Sbjct: 307 SNRGLDGGYSLEALSSSAEVMSDCAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTI 366

Query: 137 --------SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                     D       D+ ++Y+A D      LR     KL+
Sbjct: 367 ILPPVEEIQEDVEQR---DKWIEYSALDAQATWFLRESLEAKLR 407


>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus pseudintermedius ED99]
          Length = 1435

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 62/197 (31%), Gaps = 54/197 (27%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           P++   +    +  D ET GL  + D+   L  V++  G+    I +          L  
Sbjct: 410 PSDIMLQDATYVVFDVETTGLSNQYDKIIELAAVKVKNGE---IIDKFERFSNPHEKLTE 466

Query: 69  -----------MLVD-EKREKIF--------------HYGRFDIAVL-----FYTFGVRV 97
                      ML D  + E++               H   FD+  +        FG   
Sbjct: 467 TIKNLTHITDDMLKDAPEIEEVLTEFKAWVGDAIFVAHNASFDMGFIDTGYERLGFGPSA 526

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
             V  T   SR   T   +HGL    K+  G+ +++  +                A  D 
Sbjct: 527 NAVIDTLELSRTINTSYGKHGLNFLAKKY-GVELTQHHR----------------AIYDT 569

Query: 158 VHLHALRLQFTEKLQRL 174
                + ++   +L+ L
Sbjct: 570 EATAYIFVKMLAQLKAL 586


>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
 gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
          Length = 1439

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           P     +    +  D ET GL    D    L  V++  G+    I            L  
Sbjct: 413 PDHIELKEATYVVFDVETTGLSAIYDNIIELAAVKMQNGN---VIDTFEEFINPGRPLSA 469

Query: 69  -----------MLVDEKREK---------------IFHYGRFDIAVL-----FYTFGVRV 97
                      ML + + EK               + H   FD+  +      + F    
Sbjct: 470 TIIDLTGITDAMLANTRTEKEVISDFREWVGDAIFVAHNASFDMGFIDTAYNRHGFEKSH 529

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             V  T   SR        H L    K    + + +  ++
Sbjct: 530 NAVIDTLEMSRFLHPNLKSHRLNTLAKRY-NVALEQHHRA 568


>gi|89901599|ref|YP_524070.1| 3'-5' exonuclease [Rhodoferax ferrireducens T118]
 gi|89346336|gb|ABD70539.1| 3'-5' exonuclease [Rhodoferax ferrireducens T118]
          Length = 198

 Score = 41.5 bits (97), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 111 RTYTNQHGLKDNLKELLGINI--SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           R Y    G+K  +  L       SK   +S+W+   LS  QL YAA+D      +    
Sbjct: 137 RGYRKDMGVKGAVAVLFNQRFIKSKKATTSNWALPSLSQAQLVYAANDAYAAVRVFHAL 195


>gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 919

 Score = 41.5 bits (97), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 11/103 (10%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
             +  + +       L D +R K+ H  +  + V     G+ V  V   T + + L +  
Sbjct: 484 PSSLDEDDERAFADWLGDPERPKVMHDAKGLMRVFGEH-GMTVAGVAMDTALGAYLVKPG 542

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
                L     E LG  +  AQ+         SD QL + A D
Sbjct: 543 RRTFALDALSLEYLGRELVPAQE---------SDGQLAFGADD 576


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score = 41.5 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 22/133 (16%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTF---GVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L+D     + H    D+  L+      G+    P F T +A+ L     + + L D  ++
Sbjct: 368 LLDSGARLVGH----DLKPLYNWLYSQGIEPPAPAFDTALAAYLLDPSRSSYDLADLCRQ 423

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CC 184
                +        W+                  L  L  +   +L   G   L      
Sbjct: 424 HGLGELPPGDTPDLWATR-------------ASVLPELHRRMEAELAAQGVDRLYREVEL 470

Query: 185 NFLMDRAELDLLG 197
             +   AE++ +G
Sbjct: 471 PLMPILAEMEAVG 483


>gi|330939771|ref|XP_003305888.1| hypothetical protein PTT_18843 [Pyrenophora teres f. teres 0-1]
 gi|311316927|gb|EFQ86028.1| hypothetical protein PTT_18843 [Pyrenophora teres f. teres 0-1]
          Length = 348

 Score = 41.1 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 25/143 (17%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASRLTRTYTNQ---HGL 119
           L  +L      K+F   R D   LF  + + +  +   ++   A+R   T  ++     L
Sbjct: 141 LKTILESPTIPKVFFDVRNDSDALFAHYKIALSCIHDLQVMELATRTVTTGNSRDFLCSL 200

Query: 120 KDNLKE---LLGINIS----------------KAQQSSDWSADDLSDEQLQYAASDVVHL 160
              +++   L  +++                 K    + +    L  +  +Y   DVV++
Sbjct: 201 STCIRDNAALSPVDLDAWKAIKEAGNALFNPHKGGSYAVFETRPLEKDVQEYCVQDVVYM 260

Query: 161 HALRLQFTEKLQRLGRSDLATSC 183
             L   F +++Q+    +   + 
Sbjct: 261 PLLWSVFEKRIQKDRLYEAEMAE 283


>gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 908

 Score = 41.1 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRT 112
                 + +       L    R KI H  +  + V     G RV  V   T +A+ L + 
Sbjct: 379 DPARLDEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTMDTALAAYLVKP 437

Query: 113 YTNQHGLKDNLKELLGINI 131
                 L     E LG  +
Sbjct: 438 GRRSFALDALSLEYLGREL 456


>gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 240

 Score = 41.1 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 27/114 (23%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113
           A + +  + D K   I H   FDI  L +   +          +     T + +R +   
Sbjct: 88  ADDFLEFIADSKL--IIHNAPFDIKFLNHELSLLKRAEIKLLELANTIDTLVMAR-SMFP 144

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +++ L    K      +  + +            QL  A  D   L  + ++ 
Sbjct: 145 GSKYNLDALCKRF---KVDNSSR------------QLHGALKDAALLAEVYVEL 183


>gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
           CH34]
          Length = 530

 Score = 41.1 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 57/179 (31%), Gaps = 48/179 (26%)

Query: 21  DAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGML---VDEK 74
             + VD ET G   +RDR   + +V++ P DG  +   +     + P  V  L    DE 
Sbjct: 34  PIVFVDLETTGADAQRDRITEIGVVEVGP-DGIQEWDTLVDPLTSIPPFVQGLTGITDEM 92

Query: 75  R--------------EK------IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLT 110
                          EK      + H  RFD   L   F   GV  R  V CT   SR  
Sbjct: 93  VRGQPTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTFRADVLCTLRLSRSL 152

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
                +HGL   +                     L+ +    A +D   L     +  E
Sbjct: 153 FPSVERHGLDALIARFG-----------------LTPKGRHRALADAELLWQFWQKIHE 194


>gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 470

 Score = 41.1 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 51/194 (26%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSP----------GDGTVDIIRIAAGQKNAPN 65
           A   +  +  DTET GL+P +D +  VQ+            G+    ++        A  
Sbjct: 272 ALSQLCFVVFDTETTGLLPHKDEI--VQIGAVRVVKGRIVEGEQFDTLVNPGIPIPPAST 329

Query: 66  LVGMLVDEKR--------------------EKIFHYGRFDIAVLFYTFGVRV----RPVF 101
            V  + D                         + H   FD+A L             P+ 
Sbjct: 330 RVHKVSDRMVQDAPDIITAGRQFHHFARDAVIVAHNAPFDMAFLRRHAKRMEVEWDHPIL 389

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
            T + S +    +  H L       LGI I +  + +              A  D V   
Sbjct: 390 DTVLLSAVLFGASETHTLDALCDR-LGIEIPETLRHT--------------ALGDAVATA 434

Query: 162 ALRLQFTEKLQRLG 175
              ++    LQ  G
Sbjct: 435 EALVRMLPMLQARG 448


>gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
 gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
          Length = 912

 Score = 41.1 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 2/92 (2%)

Query: 42  VQLSPGDGTVDIIRIAAGQK--NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           + L+ GD     + +  G    +   L   L D   +K+ H  +  +  ++         
Sbjct: 361 IALAGGDDHATFVDLGPGLDAVDEQALADWLADPDAQKVVHEVKGPLLAVWARGWDLAGV 420

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           V  T +A+ L         L D     L   +
Sbjct: 421 VSDTALAAYLALPGQRSFDLADLAVRYLRREL 452


>gi|326517671|dbj|BAK03754.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 263

 Score = 41.1 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           ++ ++QL        ++ I       P L  +L D    K+      D   +F  + VRV
Sbjct: 149 KVALMQLCMDKTHCYVMHIIHSGV-PPILKSLLEDSSSVKVGVCIDNDARKMFNDYDVRV 207

Query: 98  RPVFC--TKIASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDE 148
           +P+    T +A+        +  L    + +    + K    +  +W A  LS +
Sbjct: 208 QPLMDLST-VANLKLAGPYKRWSLAALTEMITCKELPKPGNIRMGNWEAFVLSKK 261


>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
 gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
          Length = 960

 Score = 41.1 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 26/190 (13%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG------- 68
                + + +DTET  + P   +L  + LS   G    I +A    +   L         
Sbjct: 365 LLDASELVCIDTETTSIDPMLAQLVGISLSVQPGRACYIPVAHRGPDVSGLDAAAQLSRE 424

Query: 69  --------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119
                    L DE R K+  + ++D  V     G+ +R +   T + S +  ++ N HG+
Sbjct: 425 AVLARMRLWLEDEIRSKVGQHLKYDAHVFANH-GIALRGIAHDTMLQSYVLASHRN-HGM 482

Query: 120 KDNLKELLGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               + +L +          K      +    L     +YAA D      L      K+ 
Sbjct: 483 DALAERVLHLKTITYEEVCGKGAAQIGFDEVALDRA-TEYAAEDADITLRLHRALYPKVA 541

Query: 173 RLGRSDLATS 182
              +      
Sbjct: 542 EDDKLRYVYE 551


>gi|189200661|ref|XP_001936667.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983766|gb|EDU49254.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 298

 Score = 41.1 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 26/141 (18%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKE 125
           L  +L      K+F   R D   LF  + V +  +   ++    TR  T  +  +     
Sbjct: 87  LKTILESPTIPKVFFDVRNDSDALFAHYKVALSCIHDLQVMELATRPMTTGNSRQFLCSL 146

Query: 126 LLGINISKAQQSSD---WSA----------------------DDLSDEQLQYAASDVVHL 160
              I  +    S+D   W+A                        L  E   Y   DVV++
Sbjct: 147 STCIRDNAPLSSTDLAAWTAIKEAGNALFDPKKGGSYSVFETRPLRTEVQDYCVQDVVYM 206

Query: 161 HALRLQFTEKLQRLGRSDLAT 181
             L   F  ++Q+  R D A 
Sbjct: 207 PLLWDIFEHRIQK-DRMDEAE 226


>gi|170110060|ref|XP_001886236.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164638820|gb|EDR03095.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1587

 Score = 41.1 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 20/145 (13%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNA---PNLVGMLVDEKREKIFHYGRF------------DI 86
           +QL+     V + ++   Q+ A   PNL+ +L      K+ +  +             D+
Sbjct: 609 IQLAVHKE-VYVFQVTELQEKASAPPNLLSLLSSTHIIKVGYSIQETLLCLANLWSIDDL 667

Query: 87  AVLFYTFGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLKELLGINISKAQQS--SDWSAD 143
                      + +    + ++     ++ +         +LG +I+++     SDWSA 
Sbjct: 668 KSQLKAGSKTPQ-ILDLGVLAKAKGVVSDAKASFITLTGLILGQSINQSNSLALSDWSAI 726

Query: 144 DLSDEQLQYAASDVVHLHALRLQFT 168
            LS EQ+  +A D  ++ ++  +  
Sbjct: 727 TLSKEQIDSSALDAFNVFSMWQKLA 751


>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
 gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
          Length = 1428

 Score = 41.1 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 13/87 (14%)

Query: 62  NAPNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLT 110
           +AP +  +L D           + H   FD+  L   F          PV  T   +R  
Sbjct: 475 DAPEVADVLKDFHTWMGNDIL-VAHNASFDMGFLNQGFQRIDYEKASNPVVDTLELARFL 533

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQS 137
                 H L    K  L I +++  ++
Sbjct: 534 LPELRNHRLNTLCKH-LDIELTQHHRA 559


>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
 gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
          Length = 1442

 Score = 41.1 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 416 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 474

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 475 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 577 ATAYIFIKMVQQMKELG 593


>gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B']
          Length = 865

 Score = 41.1 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFC 102
           ++ G     I    A + +   +      +   KI H  + D+  + Y + + +   +F 
Sbjct: 329 VADGSNCYFIAANLAQEYDIIAVKNFFEAKNISKILHNSK-DLRHILYRYQINIHGNIFD 387

Query: 103 TKIASRLTRTYTNQH-------GLK-DNLKELLGINISK 133
           T IAS L     + +       G    ++ +LLG   +K
Sbjct: 388 TAIASYLINPLQSDYELSVAATGYDIKHVDQLLGTGKNK 426


>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1443

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 59/200 (29%), Gaps = 47/200 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG--------------DGTVDII 54
           P +        I  D ET G     D    L  V++  G                T  II
Sbjct: 419 PIDVDLEDATYIVFDVETTGFSNVYDTIIELAAVKIKNGQVIDTFERFSNPHRKLTAKII 478

Query: 55  RIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLF---YTFGVRV-RPVF 101
            +     +    AP L  ++ +          + H   FD+  L+      G+ V  P  
Sbjct: 479 ELTHITDDMLVNAPELSDVIREFHDFIGDGVVVAHNAAFDLGFLYVAYKNAGIEVRHPGI 538

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
            T   SRL       H LK   K+   I +++  +                A  D     
Sbjct: 539 DTVELSRLVNPGQKSHNLKTLTKKY-NIELTQHHR----------------AIYDTEATG 581

Query: 162 ALRLQFTEKLQRLGRSDLAT 181
            L L   ++   LG  +L  
Sbjct: 582 ELFLHLLKQAADLGIKNLIE 601


>gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
 gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
          Length = 875

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           I    ++D  ++   FG+   +    T I + L    ++  G+ +  K+L      K + 
Sbjct: 377 IGQNLKYDFRIVANNFGIEPPKNYSDTMILAWL-DDPSSSVGMDNLAKKLYNYETIKFES 435

Query: 137 SS----DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRA 191
                 D+S+ DL     +YA+ D          FT KL+     ++A +    F++   
Sbjct: 436 VVKKGEDFSSVDLQSA-SKYASEDAWITLKFYKTFTNKLE-ESMLNIAKNVEFPFILTLF 493

Query: 192 ELDLLG 197
           +++  G
Sbjct: 494 DMESNG 499


>gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 1454

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 509 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 567

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 568 KHHRAVD 574


>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1428

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 36/153 (23%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP----GDGTVD----IIRIAAGQ-------- 60
               + +  DTET GL  R     +++++     G   VD    +I              
Sbjct: 411 LEDAEFVVFDTETTGLNAREH--TLIEIAAVKVRGGELVDHYTSLIDPGVPISPKIQELT 468

Query: 61  -------KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLF---YTFGVRV--RPVFCT 103
                  K  P L  +L            + H   FD+  L       G      PV  T
Sbjct: 469 GITSDMVKGQPGLSEVLEAFRKFAAGAVLVAHNAEFDMGFLQSAARKLGQPPWDHPVLDT 528

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
              +R+       H LK   ++   + +    +
Sbjct: 529 LALARVLYPRERNHRLKTLTQKF-NVELVNHHR 560


>gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
 gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
          Length = 1449

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 563 KHHRAVD 569


>gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
 gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
          Length = 1449

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 563 KHHRAVD 569


>gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
 gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
          Length = 1449

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 563 KHHRAVD 569


>gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1449

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYKCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 563 KHHRAVD 569


>gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 897

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRT 112
                 + +       L    R KI H  +  + V     G RV  V   T +A+ L + 
Sbjct: 368 DPARLDEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTMDTALAAYLVKP 426

Query: 113 YTNQHGLKDNLKELLGINI 131
                 L     E LG  +
Sbjct: 427 GRRSFALDALSLEYLGREL 445


>gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1449

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 563 KHHRAVD 569


>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1449

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 563 KHHRAVD 569


>gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1454

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 509 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 567

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 568 KHHRAVD 574


>gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 1216

 Score = 41.1 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQCSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 562

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 563 KHHRAVD 569


>gi|296314226|ref|ZP_06864167.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           polysaccharea ATCC 43768]
 gi|296839130|gb|EFH23068.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           polysaccharea ATCC 43768]
          Length = 408

 Score = 41.1 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 46/157 (29%), Gaps = 38/157 (24%)

Query: 62  NAPNLVGMLVDE-KREK----IFHYGRFDIAVLFYTF---GV-RVRPVFCTKIASRLTRT 112
           +AP    +  +     K    I H  RFD   L + F   G+    P  C+   SR    
Sbjct: 28  DAPIFAEIAGELFSVLKGCVLIAHNSRFDYTFLKHEFHRAGIGFSSPALCSVQLSRCLYP 87

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
              +H L   ++  LGI +    +                A +DV    AL       L 
Sbjct: 88  QFYKHSLDSIIER-LGIVVEDRHR----------------AMADVS---ALCDYLEYSLS 127

Query: 173 RLGRSDLATSCCNF---------LMDRAELDLLGWEN 200
             G       C            L +R    L G  +
Sbjct: 128 EHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPD 164


>gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
 gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
          Length = 681

 Score = 41.1 bits (96), Expect = 0.088,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 418 EVDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNIIAEFDEFINPGHHLSAFT 474

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  LV +L +     +    + H   FD+  +      +      +P
Sbjct: 475 TELTGITDDHVKNAKPLVQVLKEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKITQP 534

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 535 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 566


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 58/190 (30%), Gaps = 27/190 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG-------- 68
           A+     A DTET  L P + +L    L+   G    I +   +     L G        
Sbjct: 375 AQEQGFFAFDTETTSLDPMQAKLVGFSLALQPGKAAYIPLEHFEGKEDLLKGGRIASQIE 434

Query: 69  ----------MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG 118
                     +L D    KI    ++D  V+     + +R    T + S         H 
Sbjct: 435 TRKALALLKPLLEDSAVLKIGQNIKYDWLVVKQY-DIVIRSFDDTMLLSYALDAGALTHN 493

Query: 119 LKDNLKELLGINIS--KAQQS-----SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           + D  +  L       K         + ++  DL    L YAA D      L      +L
Sbjct: 494 MDDLSERWLEHKPIAYKDLTHNGKKITSFAQVDLKQATL-YAAEDADITLRLWQVLKPQL 552

Query: 172 QRLGRSDLAT 181
              G + +  
Sbjct: 553 VARGMTKIYE 562


>gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
 gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
          Length = 245

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 33/122 (27%), Gaps = 35/122 (28%)

Query: 67  VGMLVDEKR-----------EKIFHYGRFDIAVLFYTFGVR--------VRPVFCT-KIA 106
             +  D                + H   FD   + +                +  T +IA
Sbjct: 67  KPIFKDPAIGQAFYQFCEGAVLVAHNASFDCKFMQHHLDEIGLPWAWGEPGDIVDTLQIA 126

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
            +  R   +   L    +   GI++++             + Q   A  D   L  + ++
Sbjct: 127 RK--RFPGSPSSLDALCQRF-GIDLTER------------EAQGHGALLDSRLLAEVYIE 171

Query: 167 FT 168
            T
Sbjct: 172 LT 173


>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis FRI909]
          Length = 1438

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
 gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
          Length = 1438

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
          Length = 1439

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 550 GVNLEQHHRA 559


>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
 gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
          Length = 1439

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 550 GVNLEQHHRA 559


>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
          Length = 1439

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 550 GVNLEQHHRA 559


>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
          Length = 1439

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 550 GVNLEQHHRA 559


>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
          Length = 1439

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 550 GVNLEQHHRA 559


>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
          Length = 1439

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 550 GVNLEQHHRA 559


>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
          Length = 1439

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 550 GVNLEQHHRA 559


>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
 gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis RP62A]
 gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 1436

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 410 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 468

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 469 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 527

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 528 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 570

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 571 ATAYIFIKMVQQMKELG 587


>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU028]
 gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU045]
          Length = 1438

 Score = 41.1 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU144]
          Length = 1438

 Score = 41.1 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
          Length = 1439

 Score = 41.1 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 550 GVNLEQHHRA 559


>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 1439

 Score = 41.1 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 491 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 549

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 550 GVNLEQHHRA 559


>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1442

 Score = 41.1 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 416 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 474

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 475 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 577 ATAYIFIKMVQQMKELG 593


>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
          Length = 1440

 Score = 41.1 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 492 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 550

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 551 GVNLEQHHRA 560


>gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 909

 Score = 41.1 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 21/78 (26%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                 + +       + D  R K+ H  +  + V              T +A+ L +  
Sbjct: 380 DTTQLDESDERAFAAWISDPSRPKVMHNAKDALRVFPEHGWEIAGVTMDTALAAYLVKPG 439

Query: 114 TNQHGLKDNLKELLGINI 131
                L     E L   +
Sbjct: 440 RRSFALDALSIEYLHREL 457


>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
 gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|307106303|gb|EFN54549.1| hypothetical protein CHLNCDRAFT_135337 [Chlorella variabilis]
          Length = 508

 Score = 41.1 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 18/98 (18%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFG-------VRVRPVFCTKIASRLTRTYTNQ-- 116
           L  +       K+      D+  +    G         V P        R  R    +  
Sbjct: 72  LQALFRSRGCLKLGWGLVHDLRAIAAALGGEGGSCIAVVDPACDLGSMHRFLRHRGARGA 131

Query: 117 --HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
              GL   ++  LG  + K  Q        LS EQ +Y
Sbjct: 132 VDLGLSGLVEAQLGRPLDKQLQ-------PLSAEQRRY 162


>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
 gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
 gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
          Length = 1442

 Score = 41.1 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 416 PTDRNLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 474

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 475 INLTHITDDMLTDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 533

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 534 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 576

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 577 ATAYIFIKMVQQMKELG 593


>gi|71417200|ref|XP_810502.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70875040|gb|EAN88651.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 842

 Score = 41.1 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 13/107 (12%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIA--SR-LTRTYTNQHG 118
             NL  +L +++  K+      D   L   +   R+ P  C ++A  +R L  T  +  G
Sbjct: 220 LDNLTSLLANKRVAKVGVGIIGDQEKLQRDYTAFRLCP--CVELAVLARHLFPTAEDLMG 277

Query: 119 LKDN---LKELLGINISKAQ--QSSDWSAD--DLSDEQLQYAASDVV 158
           L+          G  + K      SDW +    LS  QL+YAA+D  
Sbjct: 278 LRSLKDFAARFAGRKLKKDILVTCSDWGSSLGALSPLQLEYAAADAE 324


>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
 gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 889

 Score = 41.1 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 65/206 (31%), Gaps = 45/206 (21%)

Query: 21  DAIAVDTETL-----------------GLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA 63
             ++ DTET                  G+            +P   +   +     ++ A
Sbjct: 323 SIVSFDTETTNLDVLCAKIVGFSFSLDGINAYY--------APIAHSYLGVPEQISKELA 374

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR---PVFCTKIASRLTRTYTNQ-HGL 119
              +  L + K   I H  ++D+ +L   F    +    +  + + + L    ++    L
Sbjct: 375 LEFINSLFNAKVV-IGHNLKYDLEILHTNFNFTPKSYHNIKDSMLLAWL--YQSDMPCNL 431

Query: 120 KDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
            D +              I K +   ++S   + +    YA  D    + L  +    L 
Sbjct: 432 DDLMARYFKHTMIAFKDIIKKGE---NFSQLPIENA-FTYACEDAAACYQLFFKINSLLP 487

Query: 173 RLGRSDLATS-CCNFLMDRAELDLLG 197
           +    ++A +    F+     ++L G
Sbjct: 488 KS-LQEVANNVEFPFIQCLVNMELSG 512


>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
 gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
 gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
 gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
 gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
 gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
 gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
 gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
 gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis 62]
 gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
 gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
 gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis V583]
 gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
 gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 244

 Score = 41.1 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 24/111 (21%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR------VRPVFCT-KIASRLTRTYTNQ 116
           P       D+  E I H  +FD+  +                +  T  IA R  +  +++
Sbjct: 80  PEFWDFFNDKNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIVDTLSIARR--KHPSSR 137

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + L    K   GI I  + +S               A  D   L  + +Q 
Sbjct: 138 NDLNSLCKRY-GITI--SHRS------------KHGALLDSHLLADVYVQM 173


>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
 gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
          Length = 1451

 Score = 41.1 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELL 127
           E    + H   FD+  L  ++G         PV  T   SR    +   H L    K+  
Sbjct: 503 EGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYPHFKSHRLNTLSKKF- 561

Query: 128 GINISKAQQS 137
           G+N+ +  ++
Sbjct: 562 GVNLEQHHRA 571


>gi|124512086|ref|XP_001349176.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum
            3D7]
 gi|23498944|emb|CAD51022.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum
            3D7]
          Length = 1923

 Score = 41.1 bits (96), Expect = 0.095,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 130  NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             ++K  Q  +W+   LS   ++YA  DV+ L         KL
Sbjct: 1874 QVNKECQIINWNFRPLSSSSVEYAILDVLILKKFFYLIQTKL 1915


>gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
 gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
          Length = 992

 Score = 41.1 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 47/174 (27%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G            D    K++H   FD  V+    G++V      
Sbjct: 317 FGNGKTCIWVDVLDGGPDVLMEFAPFFEDSSIRKVWHNYSFDSHVIENY-GIKVAGFHAD 375

Query: 103 TKIASRL---TRTYTNQHGLKDNL--KELLGI--------------------NISKA--- 134
           T   +RL   +R     + L+       ++G+                     I K    
Sbjct: 376 TMHLARLWDSSRRTDGGYSLEGLTNDHRVMGVVSKELRKIGKRSMKTIFGRKKIKKDGSE 435

Query: 135 -----------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
                       Q  D    +L    + Y++ D +    L      KL+R   +
Sbjct: 436 GKITAIEPVEILQRED---REL---WICYSSLDSMSTLKLYESLKSKLERKPWT 483


>gi|294879932|ref|XP_002768830.1| hypothetical protein Pmar_PMAR000238 [Perkinsus marinus ATCC 50983]
 gi|239871768|gb|EER01548.1| hypothetical protein Pmar_PMAR000238 [Perkinsus marinus ATCC 50983]
          Length = 1520

 Score = 41.1 bits (96), Expect = 0.097,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 30/110 (27%)

Query: 66   LVGMLVDEKREKIFH------YGRFDIAVLFYTF------------GVRVRPVFCTKIAS 107
            L  +L      K+ +      Y +F   VL +              GV ++P+F      
Sbjct: 1284 LTSVLCHPNILKVVYGINAANYAKF--VVLQHVLVEDKFSDDVREDGVVIQPLFD----- 1336

Query: 108  RLTRTYTNQHGLKDNLKE-LLGINISKAQQSSDWSADD-LSDEQLQYAAS 155
             ++  Y N   L   ++E L GI +  A++ S+W     L   QL YAAS
Sbjct: 1337 -VSAGYPNP--LHVEVRENLAGIRLCVAEEMSNWDRRPFLRYSQLHYAAS 1383


>gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 1454

 Score = 41.1 bits (96), Expect = 0.098,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 509 VAHNAPFDMGFIKRDVKKYLNIDLQSSVIDTLQMARDLFPDLKKYGLGDL-NKTLGLALE 567

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 568 KHHRAVD 574


>gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1402

 Score = 41.1 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 53/206 (25%)

Query: 22  AIAVDTETLGLMPRRDRLCIV--------QLS-------PGDGTVDIIRIAAGQ------ 60
            + VD ET G   +RDR+  +        Q++         +G +  +RI+         
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDRFSTFVDPEGKI-PVRISELTGIYQDM 448

Query: 61  -KNAPNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRL 109
              AP L+                + H  +FDI  L   +   G+        T   SR 
Sbjct: 449 VDKAPKLIDAILEFERFASSSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELSRR 507

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
             T  + + L   + E L + +    +                A SD      + +   E
Sbjct: 508 LLTDLSSYKLNK-VAEFLNVELRHHHR----------------ADSDAETTAGIFISLLE 550

Query: 170 KLQRLGRSDLATSCCNFLMDRAELDL 195
           +L+  G         N +   A+ DL
Sbjct: 551 RLKARG-YKWLK-ELNSIESNAKADL 574


>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
          Length = 855

 Score = 41.1 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 37/159 (23%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL 109
           + +  +   +         L D   +K++H   FD  VLF   G+ V+ +   T   +RL
Sbjct: 181 IWVDNLDNAEGTLEYFRAFLEDSSLKKVWHNYSFDRHVLFNH-GINVQGLHGDTMHMARL 239

Query: 110 ---TRTYTNQHGLKDNLKELLGI---------------------------NISKAQQSSD 139
               R     + L+    +LL                             N++  Q+ +D
Sbjct: 240 WNTARFKRGGYSLQALTSDLLHQRKKNMKELFGTPKPRKDGSPGKEKTIPNVADLQRCAD 299

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           + +       ++Y+  D      L      KL+     +
Sbjct: 300 FRSR-----WIRYSVFDAESTWFLHRVLQHKLELTHWIE 333


>gi|156050591|ref|XP_001591257.1| hypothetical protein SS1G_07883 [Sclerotinia sclerotiorum 1980]
 gi|154692283|gb|EDN92021.1| hypothetical protein SS1G_07883 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 772

 Score = 41.1 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHG 118
           Q     LV +        I H    D+  L         P +  T +     R    +  
Sbjct: 391 QDIQKRLVKLFHSRSIL-IGHSLDSDLKALK-----LTHPYIIDTAVIYPHPRGPPLKSS 444

Query: 119 LKDNLKELLGINISKAQQSS 138
           LK   ++ LG  I K   ++
Sbjct: 445 LKWLAQKYLGKEIQKGHGAT 464


>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
 gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
          Length = 1438

 Score = 41.1 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 69/197 (35%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + D+   L  V++  G+  +D               I
Sbjct: 412 PTDRDLKDATYVVFDVETTGLSNQYDKIIELAAVKVHNGE-IIDKFERFSNPHEKLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLTDAPEIEDVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+++++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTDYGKHGLNFLAKKY-GVDLTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|218512494|ref|ZP_03509334.1| hypothetical protein Retl8_01789 [Rhizobium etli 8C-3]
          Length = 35

 Score = 41.1 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/20 (70%), Positives = 16/20 (80%)

Query: 188 MDRAELDLLGWENVDIFSHS 207
             RA+LDLLGWE  DIF+HS
Sbjct: 16  PTRAKLDLLGWEEADIFAHS 35


>gi|119481859|ref|XP_001260958.1| exonuclease, putative [Neosartorya fischeri NRRL 181]
 gi|119409112|gb|EAW19061.1| exonuclease, putative [Neosartorya fischeri NRRL 181]
          Length = 750

 Score = 41.1 bits (96), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 39/165 (23%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60
           +V E +I         D +A+D E   T G      R+ +V     DG V +  +   Q 
Sbjct: 346 QVPEHEIQQGSVTAGRDVLALDCEMCITEGGKSELTRISLV---RWDGEVVLDELVKPQL 402

Query: 61  -------------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95
                                         L+ +L   +   + H    D+  L      
Sbjct: 403 PIIDYLTRFSGITKEKLDSVTTTLADIQQKLLNILT-PRTVLVGHSLNSDLNALK----- 456

Query: 96  RVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
              P +  T I     R    +  LK   ++ LG  I K Q   D
Sbjct: 457 LTHPFIVDTAIIYPHPRGPPLKCSLKWLTQKYLGKEIQKGQTGHD 501


>gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
 gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
          Length = 910

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 44  LSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP 99
           ++  DG    I +A     +   L   L D +  K  H    D    ++     G+ VR 
Sbjct: 368 IADADGAALGIDLAEIDPADEKVLAQWLADPEAPKAVH----DAKPAWHALTGRGLEVRG 423

Query: 100 VF-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           V   T +A+ L       + L D +   L   +      +D
Sbjct: 424 VVMDTALAAYLCHPDQRSYDLADLVVRYLHRELP----RTD 460


>gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 193

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 46/140 (32%), Gaps = 34/140 (24%)

Query: 20  VDAIAVDTETLGLMPRRDRL---CIVQLSPGDGT-----------------VDI------ 53
              +A+D ET GL  R DR+     ++ +PG  T                 V I      
Sbjct: 8   SGFVAIDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPSEAVAIHGITDE 67

Query: 54  -IRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYT-----FGVRVRPVFCTKIA 106
            +  A G   A   L   L DE+   +FH   FD+  L            V PVF T   
Sbjct: 68  MVEGAPGLSEASIALASFLKDEEPM-VFHNPSFDLGFLDANMRAIKGSWNVMPVFDTCGL 126

Query: 107 SRLTRTYTNQHGLKDNLKEL 126
           +R        + L    +  
Sbjct: 127 ARKAFPGIKGYSLVALARHF 146


>gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 493

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 57/189 (30%), Gaps = 47/189 (24%)

Query: 10  DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQL--SPGDGTVDIIRIAAGQK------ 61
            + A  +A     + +D E  G  P  DR+  +      G+G     ++   Q+      
Sbjct: 9   QLAAAFSAFRRPVVIIDLEATGGNPYTDRITEIAFLRFDGNGVSSYRQLVNPQRNIPEFV 68

Query: 62  ------------NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGV----RVRPV 100
                       +AP    +  D          + H  +FD   L + F         P 
Sbjct: 69  SNLTGIDDEMVADAPPFADLSDDLLHRLRGTLLLAHNSKFDYTFLRHEFSRCRLSYAAPT 128

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            CT   SR       +H L   ++    I +S   +                A +DV+ L
Sbjct: 129 LCTVQLSRRLYPQFFKHNLDSIIERH-QIAVSSRHR----------------AMNDVLAL 171

Query: 161 HALRLQFTE 169
               L+ T 
Sbjct: 172 AD-YLELTA 179


>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
 gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
          Length = 1441

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L             +PV  T   SRL   +   H L    K    + + 
Sbjct: 508 VAHNASFDMGFLNTGYEKEGLEKTTQPVIDTLELSRLLHPHLKSHRLNTLAKRY-NVALE 566

Query: 133 KAQQS 137
           +  ++
Sbjct: 567 QHHRA 571


>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1436

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 11/88 (12%)

Query: 60  QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRL 109
            K+AP++  +L            + H   FDI  L   F     G    PV  T   +R 
Sbjct: 480 LKDAPDVEEVLRQFYDWIGDSVLVAHNASFDIGFLNVGFAKIGLGKVTNPVIDTLELARF 539

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQS 137
                  H L    K+   I +++  ++
Sbjct: 540 LYPDLKNHRLNTLCKKF-DIELTQHHRA 566


>gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
 gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
          Length = 1395

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 7/77 (9%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           L      +    + H   FD+  L      +       PV  T   SR        H L 
Sbjct: 497 LFKEFAGDSIL-VAHNASFDMGFLNTSNAKHNIPDAENPVIDTLELSRFLHPQFKSHRLN 555

Query: 121 DNLKELLGINISKAQQS 137
              K+  G+N+ +  ++
Sbjct: 556 TLAKKY-GVNLEQHHRA 571


>gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 677

 Score = 40.8 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 40/157 (25%)

Query: 17  ARYVDAIAVDTETLGLMPRR-DRLCIVQLSPG---DGTVD-------------IIRIAAG 59
            R +  I  DTET GL P + D++  VQ+      +G +              +I   + 
Sbjct: 479 LRSLTFIVFDTETTGLQPSQGDQI--VQIGAVRIVNGRILSGESFNRIVNPGRVIPPESI 536

Query: 60  ---------QKNAPNL------VGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPV 100
                     K+ P L            +    + H   FD+  L      FG++   PV
Sbjct: 537 KFHGITDDMVKDKPPLGVVLPQFKAFAADAVL-VAHNAAFDLKFLRMNERQFGLKFDNPV 595

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T + S         H L       LGI+I+    +
Sbjct: 596 LDTMMLSNYLDGPETGHSLDAICDR-LGISITDRHTA 631


>gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 913

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRT 112
                 + +       + D  R K+ H  +  + V     G RV  +   T +A+ L + 
Sbjct: 384 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITMDTALAAYLVKP 442

Query: 113 YTNQHGLKDNLKELLGINI 131
                 L     E L   +
Sbjct: 443 GRRSFALDALSVEYLHREL 461


>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
 gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
          Length = 1438

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 52/197 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVD---------------I 53
           P +   +    +  D ET GL  + ++   L  V++  G+  +D               I
Sbjct: 412 PQDVVLKDATYVVFDVETTGLSNQYNKIIELAAVKVHNGE-IIDKFERFSNPHERLSETI 470

Query: 54  IRIAAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVR 98
           I +     +    AP +  +L  E +E +       H   FD+  +        FG    
Sbjct: 471 INLTHITDDMLVDAPEIEEVLT-EFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVV 158
            V  T   SR   T   +HGL    K+  G+ +++  +                A  D  
Sbjct: 530 GVIDTLELSRTINTEYGKHGLNFLAKKY-GVELTQHHR----------------AIYDTE 572

Query: 159 HLHALRLQFTEKLQRLG 175
               + ++  ++++ LG
Sbjct: 573 ATAYIFIKMVQQMKELG 589


>gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG]
 gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF]
          Length = 914

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
             +  + +       L D +R K+ H  +  + V              T + + L +   
Sbjct: 385 PSSLDEDDERAFADWLGDPERPKVMHDAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGR 444

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
               L     E LG  +  AQ+         SD QL + A D
Sbjct: 445 RTFALDALSLEYLGRELVPAQE---------SDGQLAFGADD 477


>gi|241727922|ref|XP_002413785.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215507601|gb|EEC17093.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 256

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP--NLVGMLVDEKREK 77
              + +D E L     R R+ +V L+     V I  +   +      NL  +L   K  K
Sbjct: 36  SKMLGLDAEGLAARS-RGRISMVTLATLWRHVYIFDVKESEALFEEGNLKILLESAKMLK 94

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           + H  R      + TFGV+VR VF T  A
Sbjct: 95  VVHDFRNIAETFYNTFGVKVRKVFDTHSA 123


>gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 884

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRT 112
                 + +       + D  R K+ H  +  + V     G RV  +   T +A+ L + 
Sbjct: 355 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITMDTALAAYLVKP 413

Query: 113 YTNQHGLKDNLKELLGINI 131
                 L     E L   +
Sbjct: 414 GRRSFALDALSVEYLHREL 432


>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
 gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
          Length = 1444

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 46/160 (28%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           P          +  D ET GL    D    L  V++  G   V I +          L  
Sbjct: 417 PQHILLEDATYVVFDVETTGLSAIYDSIIELAAVKMKNG---VVIDKFEEFIDPGHPLSA 473

Query: 69  -------MLVD--------EKREK-----------IFHYGRFDIAVL---FYTFGVR--V 97
                  +  D        E+  K           + H   FD+  L   +   G+    
Sbjct: 474 TTIQLTGITDDMVRGSKSVEQVLKEFHEFSKDCILVAHNASFDMGFLNTGYENVGIERTE 533

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SR+       H L    K    + + +  ++
Sbjct: 534 QPVIDTLELSRMLHPQLKSHRLNTLAKRY-NVALEQHHRA 572


>gi|150020376|ref|YP_001305730.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis
           BI429]
 gi|149792897|gb|ABR30345.1| DNA polymerase III, epsilon subunit [Thermosipho melanesiensis
           BI429]
          Length = 184

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 58/195 (29%), Gaps = 73/195 (37%)

Query: 25  VDTETLGLMPRR-DRLCIVQLSPGDGTVDIIRIAAG------------------------ 59
           +DTET GL P   DR+           V I+ I  G                        
Sbjct: 10  LDTETTGLNPYFGDRI---------IEVAIVPIYKGKIIESWIYHSLVNPHIKISALSEK 60

Query: 60  --------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLF---YTFGVRVRPV--F 101
                    ++AP L  +L +     +    + H  R D++ L       G     V   
Sbjct: 61  IHGISNSEIESAPGLEKILDNIRAYAKDTIFVMHNARMDLSFLDIATKEVGQFPINVRYI 120

Query: 102 CTKIASRLTRTYTNQHGLKDNLKEL-LGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            T   S +   Y  +  L+  ++E   G  +    +                A  D +  
Sbjct: 121 DTLEISLIL--YGKKRSLESLVREFKFGEKVP--HR----------------ALGDAILT 160

Query: 161 HALRLQFTEKLQRLG 175
             + L+ +EK+  L 
Sbjct: 161 AKVFLKLSEKIANLN 175


>gi|57900570|dbj|BAD87022.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 327

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGV 95
           + ++Q+  G     + +I         L   L D +   +    H    D+  L   + +
Sbjct: 191 VAVLQICVG-RRCLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHD---DVDKLREHYDL 246

Query: 96  RVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
            V        +A++          GL+  + E++ + + K    + S W +  L+ +Q+ 
Sbjct: 247 EVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVM 306

Query: 152 YAASD 156
           YA +D
Sbjct: 307 YACAD 311


>gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 687

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101
           +  DG V++  I AG      L   + D +    FH   FD  VL Y       PV    
Sbjct: 36  AINDGPVNVWDITAGVGIPHGLYEAIADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK---------------------AQQSSDW 140
            T + + L        G    L E+LG+   K                       + +  
Sbjct: 96  DTMVQA-LAHGLPGSLG---ELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA-- 149

Query: 141 SADDLSDEQ---LQYAASDVVHLHALRLQFTE------KLQRLGRSDLATS---CCNFLM 188
           ++    +E    + YA  D+  +  +  +  +      +L    R         C +  +
Sbjct: 150 TSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVEL 209

Query: 189 DRAELD 194
            RA +D
Sbjct: 210 ARAAID 215


>gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10]
 gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10]
          Length = 896

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 27/151 (17%)

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLK 120
            L  +   +  EK  H    D+  L+      G+ +   +F T IA+ +     + + + 
Sbjct: 376 ELREIFESKDIEKYGH----DLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRSTYTIS 431

Query: 121 DNLKELLGINI-------SKA----QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
           +  ++ L  +I        K     +Q  D     +S  ++  AA + ++   L  +   
Sbjct: 432 ELSEDKLKQSITPVEILYDKHGKRLEQGQD-----VSSSEVCAAAVNAIY--GLTQKLRP 484

Query: 170 KLQRLGRSDL-ATSCCNFLMDRAELDLLGWE 199
            ++  G+ +L        +   A ++L G++
Sbjct: 485 IIRDNGQDELYYKIELPLVEVLANMELRGFK 515


>gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
 gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
          Length = 1446

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 7/77 (9%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           L      +    + H   FD+  L      +       PV  T   SR        H L 
Sbjct: 497 LFKEFAGDHIL-VAHNASFDMGFLNTSNAKHNIPDATNPVIDTLELSRFLHPQYKSHRLN 555

Query: 121 DNLKELLGINISKAQQS 137
              K+  GIN+ +  ++
Sbjct: 556 TLAKKY-GINLEQHHRA 571


>gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 905

 Score = 40.8 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRT 112
                 + +       + D  R K+ H  +  + V     G RV  +   T +A+ L + 
Sbjct: 376 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITMDTALAAYLVKP 434

Query: 113 YTNQHGLKDNLKELLGINI 131
                 L     E L   +
Sbjct: 435 GRRSFALDALSVEYLHREL 453


>gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171]
 gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171]
          Length = 687

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101
           +  DG V++  I AG      L   + D +    FH   FD  VL Y       PV    
Sbjct: 36  AINDGPVNVWDITAGGGIPHGLYEAIADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK---------------------AQQSSDW 140
            T + + L        G    L E+LG+   K                       + +  
Sbjct: 96  DTMVQA-LAHGLPGSLG---ELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA-- 149

Query: 141 SADDLSDEQ---LQYAASDVVHLHALRLQFTE------KLQRLGRSDLATS---CCNFLM 188
           ++    +E    + YA  D+  +  +  +  +      +L    R         C +  +
Sbjct: 150 TSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVEL 209

Query: 189 DRAELD 194
            RA +D
Sbjct: 210 ARAAID 215


>gi|313895591|ref|ZP_07829147.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975717|gb|EFR41176.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 642

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 20/118 (16%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTR------TYTNQHG 118
           L  +L +    K+ H   F+ + + Y  G+ ++ PV+ T  A+++T          N+ G
Sbjct: 86  LADLLANPHITKVAHNIAFE-SSMAYARGIVIQPPVYDTIAAAQMTSRSAYEFRRLNESG 144

Query: 119 LKDNLKELLGINISKAQQSS-----DWSADDLS---DEQLQYAASDVVHLHALRLQFT 168
           LK    ELL  ++    +++     D    +L     E ++Y A+D      L   F 
Sbjct: 145 LKHLAGELLEESLPTFAETTGGKHFD----ELPAQDKETVRYGAADADFSLRLYHTFN 198


>gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 956

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 19/117 (16%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
           AP     L +     + H   FD+ +L        +P F T   + L    T  + L   
Sbjct: 74  APRFAAFLKNYPL--VGHNVEFDLRMLRAQGMRLPQPAFDTFELATLLMPRTPAYRLSAL 131

Query: 123 LKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL 179
               LGI+  +A          LSD        DV     + L    +++ L   DL
Sbjct: 132 AAT-LGIHHDEAH-------RALSDA-------DVT--RQIFLYLLRRIEALPLDDL 171


>gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1]
 gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1]
          Length = 618

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 55/190 (28%), Gaps = 37/190 (19%)

Query: 17  ARYVDAIAVDTETLGLMPRR---DRLCIVQLSPGDGTVDIIRIAAG-QKNAPNLVGMLVD 72
           A     +AVDTET GL         L + Q    +     + I  G +        + V 
Sbjct: 35  AETRTPVAVDTETCGLKIYAWGPGFLRLAQFGN-ETEAWALPIEHGPEYVEAAAWALRVL 93

Query: 73  EKREKIFHY-GRFDI----AVLFYTFGVRVRPVFCTKIASRLTRT-----YTNQHGLKDN 122
                  H    FD       L     V    V  T+I ++L             GLK N
Sbjct: 94  PDLT--GHNWSGFDALVSDEHLGVPLEVTCAKVTDTQILAKLVDPRQQMEGGIGSGLKAN 151

Query: 123 LKELLG----------------INISKAQQSSDWSADDLS-DEQLQYAASDVVHLHALRL 165
               +                 + +   +  +      L     L+Y   DV+    LR 
Sbjct: 152 SARYIDPTAPDTQDGLKAVFKSLKLKITEGFA---KIPLDHPTYLEYGLLDVILTSRLRP 208

Query: 166 QFTEKLQRLG 175
           +    L +LG
Sbjct: 209 RLEATLAKLG 218


>gi|195021841|ref|XP_001985471.1| GH17078 [Drosophila grimshawi]
 gi|193898953|gb|EDV97819.1| GH17078 [Drosophila grimshawi]
          Length = 276

 Score = 40.8 bits (95), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 35  RRDRLC---IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR--FDIAVL 89
              R C   ++ ++  + T  +  + A       L  +L  E   KI HY     D+  L
Sbjct: 78  FYGRHCNASVIVIATANNT-YVFDLKAMGAIFSELSKLLEAECPRKIMHYSHRICDL--L 134

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS-------KAQQSS--DW 140
            +   +R+  +  T +A  + R   +   L++ +     ++ S       K+   S  ++
Sbjct: 135 LHQHKLRINGISDTFVAWCVARQDRSHCTLQEAISLTFDLHPSELTCDEIKSVTESVRNF 194

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQF 167
           +A  LS  QLQY     +  H L    
Sbjct: 195 TARPLSRGQLQYLGKIAILQHKLHDTL 221


>gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
 gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
          Length = 894

 Score = 40.8 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDN 122
             L  +L DE    I H  + +I   +  + + +  + F T +   L     + + LKD 
Sbjct: 371 SPLKDILEDEHIRIIGHDLKKEIIHFY-PYEIHIANLYFDTMVGEYLLNPAKSSYLLKDL 429

Query: 123 LKELLGINI 131
             E LG  I
Sbjct: 430 ALEYLGEEI 438


>gi|294929618|ref|XP_002779292.1| hypothetical protein Pmar_PMAR020066 [Perkinsus marinus ATCC 50983]
 gi|239888355|gb|EER11087.1| hypothetical protein Pmar_PMAR020066 [Perkinsus marinus ATCC 50983]
          Length = 1623

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 26/108 (24%)

Query: 66   LVGMLVDEKREKIFH---YGRF-DIAVLFYTF------------GVRVRPVFCTKIASRL 109
            L  +L      K+ +      +  + VL +              GV ++P+F       +
Sbjct: 1308 LTSVLCHPNILKVVYGINAANYAKLVVLQHVLVEEKFSDDVREDGVVIQPLFD------V 1361

Query: 110  TRTYTNQHGLKDNLKE-LLGINISKAQQSSDWSADD-LSDEQLQYAAS 155
            +  Y N   L   ++E L GI +  A++ S+W     L   QL YAAS
Sbjct: 1362 SAGYPNP--LHVEVRENLAGIRLCVAEEMSNWDRRPFLRYSQLHYAAS 1407


>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
 gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
          Length = 488

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 53/190 (27%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVD---------IIRIAAGQK 61
           + +A     + +D ET G    RDRL    ++++   DG V          +  I     
Sbjct: 3   DLSAFPPSMVILDCETTGGRASRDRLTEIALIEV--EDGHVVKRWQTLLNPLRPIPPWIT 60

Query: 62  -----------NAPNLVGMLVDE------KREKIFHYGRFDIAVLFYTFG----VRVRPV 100
                      +AP    +  DE       +  + H  RFD + L  +F           
Sbjct: 61  RLTGITDATVADAPTFDEI-ADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNKT 119

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            C+   SR        HGL   ++  LG+ I    +                A +D   L
Sbjct: 120 LCSVKLSRQLFPEHRSHGLDRIIER-LGLTIDNRHR----------------AMADTEVL 162

Query: 161 HALRLQFTEK 170
            A     + +
Sbjct: 163 LAFFEHISAQ 172


>gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1]
 gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type
           [Lactobacillus plantarum WCFS1]
 gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 1437

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 36/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIRIAAGQKN 62
            A    +    +  DTET GL    DR  +++LS                I       + 
Sbjct: 412 DAHVDLKESTYVIFDTETTGLSAIYDR--VIELSAVKMVKGNVVDQFEEFIDPGFHLSET 469

Query: 63  APNLVGMLVD--------EKREKIF-----------HYGRFDIAVL-----FYTFGVRVR 98
             NL  +  D        E+  K+F           H   FDI  +      +  G    
Sbjct: 470 TTNLTSITDDMVRGSKSEEEVFKLFREFYGDAIVVGHNVTFDIGFMNTGYARHHMGPITN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           P+  T   +R        + L    K+   +N+    ++
Sbjct: 530 PIIDTLTLARWLYPNLRGYRLNTLAKKF-NVNLEHHHRA 567


>gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120]
 gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120]
          Length = 977

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 52/171 (30%), Gaps = 25/171 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAG-------QKNAPNLVGML 70
            +A DTET  L PR     +V +             I +A               L  +L
Sbjct: 387 PVAWDTETSALEPRDA--ALVGIGCCWGTETDASAYIPLAHTKGENLNQDIVLAALRPIL 444

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
                 K F   +FD  V           VF   +AS +    T  H L D  +  LG+ 
Sbjct: 445 ESADYPKTFQNAKFDRLVFLVQGINLTGVVFDPMLASYVLNPDT-SHNLTDLTQRYLGLT 503

Query: 131 I-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           I        K +  +D +          Y    V     L  +  E+L + 
Sbjct: 504 IQNYVDLVPKGKTIADINI----SAVANYCCLQVYATFQLVAKLREELAKT 550


>gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010]
          Length = 687

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101
           +  DG V++  I AG      L   + D +    FH   FD  VL Y       PV    
Sbjct: 36  AINDGPVNVWDITAGGGIPHGLYEAIADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK---------------------AQQSSDW 140
            T + + L        G    L E+LG+   K                       + +  
Sbjct: 96  DTMVQA-LAHGLPGSLG---ELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA-- 149

Query: 141 SADDLSDEQ---LQYAASDVVHLHALRLQFTE------KLQRLGRSDLATS---CCNFLM 188
           ++    +E    + YA  D+  +  +  +  +      +L    R         C +  +
Sbjct: 150 TSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVEL 209

Query: 189 DRAELD 194
            RA +D
Sbjct: 210 ARAAID 215


>gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 694

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 24/78 (30%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                 + +    V  L D +R K+ H  +  + V              T +A+ L +  
Sbjct: 164 DPSELDEADERAWVAWLADAERPKVLHNAKGAMRVFAEHDWSVAGVSMDTALAAYLVKPG 223

Query: 114 TNQHGLKDNLKELLGINI 131
                L     E LG  +
Sbjct: 224 RRSFDLDALSLEYLGREL 241


>gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
 gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
          Length = 1027

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 43  QLSPGDGTVD--IIRIAAGQKNA-PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           Q   GDG     +     G ++A   L  +L      K+    +F  AVL    G+ +R 
Sbjct: 475 QAGDGDGLFAAGLAPDQLGTRDALDALKPVLESAGIAKVGFAIKF-AAVLLAQHGLTLRN 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYA 153
           +   ++ S         HGL    +  LG  +    + +    + +  +Q+       YA
Sbjct: 534 IDDPQLMSYALDAGRGSHGLDALSESNLGHTLHTLTELTGTGKNKIGLDQVGIDRATAYA 593

Query: 154 A--SDVVHLHALRLQFTEKL 171
           A  +DV     L      +L
Sbjct: 594 AERADVS--LRLARVLKPRL 611


>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 1571

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 59/200 (29%), Gaps = 55/200 (27%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIR--- 55
           E ++  +   +    +  D ET GL   RD++  ++++          G+    I     
Sbjct: 467 EDNLEKDFVLKEATYVVFDLETTGLSNVRDKI--IEIAGVKIKKGNKIGEFQKFIDPQQK 524

Query: 56  IAAGQKNAPNLVGMLV----------------DEKREKIFHYGRFDIAVLFYTFG----- 94
           +     +  N+   ++                 +    + H   FDI  L          
Sbjct: 525 LTKTITDITNITDEMLQGQQTIDQVLPQFLAFAKDCVLVAHNASFDINFLKEKAKELKIS 584

Query: 95  VRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDLSDEQLQY 152
           +  +P+  T   S+  R ++N         L     + +    +                
Sbjct: 585 LEPQPIIDTMALSQ--RYFSNLLKYFSLKRLATFFKVKLEDHHR---------------- 626

Query: 153 AASDVVHLHALRLQFTEKLQ 172
           A +D      + ++  ++L 
Sbjct: 627 ALADATATAEIFIKMIDQLA 646


>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 1530

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 34/165 (20%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRL------------------CIV--QLSPG 47
           E ++  +   +    +  D ET G    +D++                   ++  Q    
Sbjct: 436 EDNLTQDFNLKEATYVVFDLETTGFSSTKDKIIEIAGVKIKHGKKIQEFQALINPQEKLS 495

Query: 48  DGTVDIIRIAAGQKNAPN-LVGMLVD-----EKREKIFHYGRFDIAVLF---YTFGV--R 96
              ++I  I        N +  +L D     E    + H   FDI  L       G+  +
Sbjct: 496 QTIINITNITDDMLEGKNTIDQVLPDFLNFIENCILVAHNATFDITFLKEKIKELGIAYK 555

Query: 97  VRPVFCTK-IASRLTRTYTNQHGLKDNLKELLGINISKAQQS-SD 139
            +PV  T  ++ R    +     LK     +  + + +  ++ SD
Sbjct: 556 PQPVIDTMTLSQRFFSEFLKYFSLKRL-ATVFKVKMEEHHRALSD 599


>gi|333027886|ref|ZP_08455950.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
 gi|332747738|gb|EGJ78179.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
          Length = 914

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 9/102 (8%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
             +  + +       L D +R K+ H  +  + V              T +++ L +   
Sbjct: 385 PSSLDEDDERAFADWLGDPERPKVMHDAKGLMRVFGEHGMTVAGVAMDTALSAYLVKPGR 444

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
               L     E LG  +  AQ+         SD QL + A D
Sbjct: 445 RTFALDALSLEYLGRELVPAQE---------SDGQLAFGADD 477


>gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605]
 gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605]
          Length = 687

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101
           +  DG V++  I AG      L   + D +    FH   FD  VL Y       PV    
Sbjct: 36  AINDGPVNVWDITAGGGIPHGLYEAIADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            T + + L        G    L E+LG+   K
Sbjct: 96  DTMVQA-LAHGLPGSLG---ELCEILGVPQDK 123


>gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
          Length = 913

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 41/208 (19%)

Query: 23  IAVDTETLGLMPRRDRL-----CIVQLSPGDGTVDIIRI----------AAGQKNAPNLV 67
           +  D E+ GL  +  +L     C      G      + +             Q+    + 
Sbjct: 347 VGFDCESDGLDLQEAQLVGFSFC----FDGK-NAYYVPVGHRYLGVGNQLNLQEAKSAIS 401

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
            +          H  +FD ++++ T G+  +  ++ + I S L  +     GL   + + 
Sbjct: 402 RIFTHPLI---GHNLKFDFSLIYRTLGLEHIGKIYDSMILSWLYDSIAP-VGLDKQMLKW 457

Query: 127 LGINI-------SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR--- 176
               +        K +  S    + ++  Q  YAA D      L  +  ++  +      
Sbjct: 458 FNHTMISFDSVVPKGENFS--QVNIITATQ--YAAEDAAATFKLYHRLEDEFHKREWGGI 513

Query: 177 SDLATS-CCNFLMDRAELDLLGWENVDI 203
            +LA +    F+    +++L G   VDI
Sbjct: 514 LELAQNLEYPFIKVLMDMELEGI-RVDI 540


>gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824]
 gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824]
 gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018]
          Length = 871

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 35/183 (19%)

Query: 23  IAVDTETLG--LMPRRDRLCIVQLSPGDGTVDIIRIAAG--QKNAPNLVGMLVDEKREKI 78
           I +DT  +                      VD+ +I     +    +L     ++K  KI
Sbjct: 337 IYIDTIFMKVEEKTY--------------IVDLKKIIEQNREDVLKDLKEFFENKKIAKI 382

Query: 79  FHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
            H  +    VL    G+++  + F T IA  L      ++ LKD  +E+L ++++     
Sbjct: 383 IHDSKNMYTVLMKN-GIKIENLAFDTAIAEYLINPSKKEYNLKDAAEEMLLLDLTGE--- 438

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDL-ATSCCNFLMDRAELDLL 196
                    D  ++    +V  +  +  +  +K++     +L        +   + ++  
Sbjct: 439 ---------DNDIK--IKEVYVMDKIYNKLKDKIKEYDMDELYYKVELPLIEVLSSMESE 487

Query: 197 GWE 199
           G++
Sbjct: 488 GFK 490


>gi|71002294|ref|XP_755828.1| exonuclease [Aspergillus fumigatus Af293]
 gi|66853466|gb|EAL93790.1| exonuclease, putative [Aspergillus fumigatus Af293]
 gi|159129885|gb|EDP54999.1| exonuclease, putative [Aspergillus fumigatus A1163]
          Length = 750

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 39/165 (23%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60
           +V E +I         D +A+D E   T G      R+ +V     DG V +  +   Q 
Sbjct: 346 QVPEHEIQQGSVTAGRDILALDCEMCITEGGKSELTRISLV---RWDGEVVLDELVKPQL 402

Query: 61  -------------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95
                                         L+ +L   +   + H    D+  L      
Sbjct: 403 PIIDYLTRFSGITKEKLDSVTTTLADIQQKLLNILT-PRTVLVGHSLNSDLNALK----- 456

Query: 96  RVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
              P +  T I     R    +  LK   ++ LG  I K Q   D
Sbjct: 457 LTHPFIVDTAIIYPHPRGPPLKCSLKWLTQKYLGKEIQKGQTGHD 501


>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
 gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
          Length = 1433

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 35/151 (23%)

Query: 21  DAIAVDTETLGLMPRRDRLCIV--------QLSPGDGTVD---------IIRIAAGQKN- 62
           D +  D ET GL P +D++  +        Q+                 I+++     + 
Sbjct: 421 DFVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITDDM 480

Query: 63  ---APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRV----RPVFCTKIASRLT 110
              AP +  +L +     +    + H   FD+  +     +       P   T     L 
Sbjct: 481 VKDAPPVEQVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMGEKVKNPYIDTL---ELC 537

Query: 111 RTYTNQHG-LK-DNLKELLGINISKAQQSSD 139
           R    + G  K + + + L I +    ++ D
Sbjct: 538 RKMFPELGRYKLNIVAKHLKIELENHHRAVD 568


>gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
          Length = 687

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101
           +  DG V++  I AG      L   + D +    FH   FD  VL Y       PV    
Sbjct: 36  AINDGPVNVWDITAGGGIPHGLYEAIADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            T + + L        G    L E+LG+   K
Sbjct: 96  DTMVQA-LAHGLPGSLG---ELCEILGVPQDK 123


>gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 778

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 57/164 (34%), Gaps = 39/164 (23%)

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRVR-PVFCTKIASRLTRTY 113
             QK   N      DE   K+     FDI    VLF   G+ +  P     +   L    
Sbjct: 250 PDQKFVDNFKKYFEDENINKV----SFDIKEDIVLFNKLGIEINFPYDDIMLMHYLIDPS 305

Query: 114 TNQHGLKDNLKELLGINI-----------SKAQQSSDWSADDLSDEQL-QY------AAS 155
            + + LK   +  L   +           +K       S  DLS+++L +Y      A  
Sbjct: 306 RSSYDLKTFSQAFLKYEVLNEEDLLGKGRNKK------SYKDLSEKELGKYLSSIINAIE 359

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATSC-CNFLMDRAELDLLGW 198
           D +         T+KL+ L   +L   C        A++++ G+
Sbjct: 360 DSL------DILTDKLKELSMYELYKDCEIKLSKVLADMEITGF 397


>gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 214

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 35/120 (29%), Gaps = 34/120 (28%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIV------------Q----LSPGDGTVDIIRIAAGQK 61
           R    I VDTET GL+P  DR+  +            Q    +            A    
Sbjct: 12  RKKRVIVVDTETTGLLPY-DRIVTIGAVKIEGDDFLHQSLHLIFDPRKDSHPQAEAVHGY 70

Query: 62  N--APNLVGMLVD--EKREKIF--------HYGRFDIAVLFYTF-----GVRVRPVFCTK 104
           +        +  D      K F        H   FD+  +   F      +   PVFCT 
Sbjct: 71  DNWMTRYQDLFSDLAAPIRKWFDWADEIVAHNADFDMRYVQREFRKAEVDMLPHPVFCTM 130


>gi|167462371|ref|ZP_02327460.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase
           domains [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 573

 Score = 40.4 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 13/115 (11%)

Query: 70  LVDEKREKIFH--YGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           L      K FH    R+D+ V     G  +R  V+ T  A  L   +  ++GLK  +++ 
Sbjct: 205 LAQPTHGKTFHMGSARYDLHVARND-GYEIRGCVWDTLDAMHLLNEHEEKYGLKKIVEKY 263

Query: 127 LGINIS---KAQQSSD-WSAD---DLSDEQL-QYAASDVVHLHALRLQFTEKLQR 173
            G             D +        S E +  YA  DV++   L     E +++
Sbjct: 264 -GKYFDIPGPIYTFEDMFGNRSPAPFSVELVGIYAIKDVLYGWKLFEWQVEMMRK 317


>gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 928

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 30/88 (34%)

Query: 49  GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
             V +   A    +   L   L D +R K  H  +  +  L          V  T +A+ 
Sbjct: 389 DAVFVDPTALDPADTEALADFLADPRRPKAVHEYKGALLALGAHGWELGGVVSDTALAAY 448

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQ 136
           L +    +  L D  ++ LG  + +   
Sbjct: 449 LVQPGQRRFDLADLCRKYLGRELEEDSS 476


>gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
 gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
          Length = 893

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK 104
           +  +  V +        ++  L   L+D    KI H  +     L    G     +  T+
Sbjct: 352 ATPESAVVVTLDELSDADSVALRQWLMDPHYPKIVHSAKEAWHALHSFSGGVKGVIADTE 411

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINI 131
           +A+ L       +GL+D     +  +I
Sbjct: 412 LAAYLAFPDQRSYGLEDLSIRYVSRDI 438


>gi|289724909|gb|ADD18385.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 224

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           +  ++ ++     V I  I    K  P+   +L  +   K+ H     +  L +   V +
Sbjct: 67  KTSVIAIATA-TNVYIFDILYLDKVYPDFGRILEAKYPRKVVHNSHKIVDHLQHRQNVNL 125

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI---SKAQQSSD-WS--ADDLSDEQLQ 151
             +F T +A  L         L++ +++ L + +      +  ++ ++     L +  L 
Sbjct: 126 SGIFDTFVAYCLVSDDKTHRSLEETIQDTLNMPLTYFETEETRTNPFTPYKRPLMNAWLS 185

Query: 152 YAASDVVHLHALRLQFTEKLQR 173
                   L A +     KL  
Sbjct: 186 --------LIAKKALLQLKLAE 199


>gi|302848759|ref|XP_002955911.1| hypothetical protein VOLCADRAFT_96821 [Volvox carteri f. nagariensis]
 gi|300258879|gb|EFJ43112.1| hypothetical protein VOLCADRAFT_96821 [Volvox carteri f. nagariensis]
          Length = 1210

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 45   SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCT 103
              GDG       A G     +L G+L D    K+ H     +  L    G  + P+  T
Sbjct: 987  CTGDG-----PEAIGGVLLTSLRGLLEDPGVAKVVHGCEQ-VRPLELASGAAIAPLLDT 1039



 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 140  WSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            W +  LSD Q+  AA  V HL  L     E
Sbjct: 1136 WLSRPLSDGQVLVAAQSVRHLPELWSALCE 1165


>gi|238608456|ref|XP_002397237.1| hypothetical protein MPER_02373 [Moniliophthora perniciosa FA553]
 gi|215471291|gb|EEB98167.1| hypothetical protein MPER_02373 [Moniliophthora perniciosa FA553]
          Length = 183

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGT--VDIIRIAAGQKNAPNLVGML 70
           A         + +D E   L  +   L +V +   +      +  I         L  +L
Sbjct: 23  AIADLGASRTLILDCEGRDLGTQGGALSLVSVRVTEPIPKTYVFDILRLHGYLEPLWALL 82

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
               + K+   GR D   ++Y +GV +      ++A
Sbjct: 83  SSMYKRKVVFDGRQDFCAMWYDYGVPLPNTIDLQLA 118


>gi|67484502|ref|XP_657471.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56474725|gb|EAL52082.1| hypothetical protein EHI_148670 [Entamoeba histolytica HM-1:IMSS]
          Length = 279

 Score = 40.4 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 14/168 (8%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFH 80
           + +  D E +   P       +QLS       ++ +   ++    LV +L ++   KI  
Sbjct: 28  NYVGFDVEYVDKTP-----ATIQLSSP-TEAFVLHVFHYKELPKTLVQLLENDGIIKIGV 81

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
             + D+  +   +    +        + L    +   G+    ++LLG    K    + W
Sbjct: 82  GVKDDLKKIDDKYKTHCQGGLDIGWTAYLIGAVSEYRGIDYLGEKLLGEK--KLGGFATW 139

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQF------TEKLQRLGRSDLATS 182
               L  +Q+ YAA D      +  +       T++ +R   +D    
Sbjct: 140 GIGRLEKKQIDYAAKDAWIGVCVAEKIYNESLTTKEKKRCNITDWVKD 187


>gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 296

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 37/143 (25%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIR----------IAAGQK 61
           + +A+D ET GL P  D++  V+++             T  I            I     
Sbjct: 121 EFVAIDLETTGLNPAIDKI--VEIAAVKFKYGEIIDSYTTLINPGIHIPSSASKINHITD 178

Query: 62  N----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVR----VRPVFCTKIAS 107
                AP+L  +L +      +    + H   FD+  L Y           P   T    
Sbjct: 179 ETVHGAPDLSEVLPNLLNFIGDSIL-VMHNASFDLKFLKYHAAKLGYDISNPFIDTLPTC 237

Query: 108 RLTRTYTNQHGLKDNLKELLGIN 130
           +   T    + L   +   L I+
Sbjct: 238 KKLFTDFENYQLAT-VANYLKIS 259


>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1435

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 54/197 (27%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           P+    +    +  D ET GL  + D+   L  V++  G+    I +          L  
Sbjct: 410 PSNIMLQDATYVVFDVETTGLSNQYDKIIELAAVKVKNGE---IIDKFERFSNPHEKLTE 466

Query: 69  -----------MLVD-EKREKIF--------------HYGRFDIAVL-----FYTFGVRV 97
                      ML D  + E++               H   FD+  +        FG   
Sbjct: 467 TIKNLTHITDDMLKDAPEIEEVLTEFKAWVGDAIFVAHNASFDMGFIDTGYERLGFGPST 526

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
             V  T   SR   T   +HGL    K+  G+ +++  +                A  D 
Sbjct: 527 NAVIDTLELSRTINTSYGKHGLNFLAKKY-GVELTQHHR----------------AIYDT 569

Query: 158 VHLHALRLQFTEKLQRL 174
                + ++   +L+ L
Sbjct: 570 EATAYIFVKMLAQLKAL 586


>gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
 gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
          Length = 895

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 47/131 (35%), Gaps = 17/131 (12%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR---PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI--- 131
           I H  ++D+ +L   F   ++    +  + + + L ++      L   +K+     +   
Sbjct: 395 IGHNLKYDLEILKTNFDFVLQDFSKIRDSMLLAWLLQS-DALCNLDFLMKKYFNHEMIHY 453

Query: 132 ----SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNF 186
                K +  S      L     +YA+ D    + L  +    L      ++A S    F
Sbjct: 454 KDIVHKKENFS----QILIQYACEYASEDAAACYQLYFKLKG-LVDERLMEIAKSVEFPF 508

Query: 187 LMDRAELDLLG 197
           +     ++L+G
Sbjct: 509 IQSLMNMELIG 519


>gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
 gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
          Length = 256

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 56/201 (27%), Gaps = 61/201 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       +  L    +  LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRSNLDALCER-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFTEKLQRLGRSDLATSC 183
           + L  T      G+++L    
Sbjct: 172 VYLMMTG-----GQTNLFDEE 187


>gi|242044354|ref|XP_002460048.1| hypothetical protein SORBIDRAFT_02g021840 [Sorghum bicolor]
 gi|241923425|gb|EER96569.1| hypothetical protein SORBIDRAFT_02g021840 [Sorghum bicolor]
          Length = 309

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 11/154 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHY 81
           + +DTE       + ++ ++Q+   +    + ++   G     +L    V E    +   
Sbjct: 112 VGLDTEHA-EYEGKKKIALIQICV-NTRCLLFQVGITGGCIPDDLKSFFVRENHVFVGVA 169

Query: 82  GRFDIAVLFYTFGVRVRPVFCTKIASRLT--RTYTNQHGLKDNLKELLGINISK---AQQ 136
              D+ +L     + +      +          + N   L     ELLG+   K     +
Sbjct: 170 ITNDMDLLRQHHNIELSKKVELQAMVPFVIQGKWCNVPSLASIGLELLGVVAEKNNPKLR 229

Query: 137 SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
             DW    L+ EQ++Y   D    + +      +
Sbjct: 230 YKDWHKKSLAHEQIKY---DAFVSYKVWEMLQSQ 260


>gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
 gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
          Length = 885

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 14/131 (10%)

Query: 3   TIRVHEGDIPAECAA--RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           ++  H+ D  +  AA  R V+++ V  E +G  P +     V L+  D  + ++ +A  Q
Sbjct: 303 SVAAHDEDALSALAAGLRSVESVYV--EVIGENPHQSETIAVALATAD-VIFVVPMAELQ 359

Query: 61  KNAPNLV-GMLVDEKREKIFHYGRFDI---AVLFYTFGVRVRPV-FCTKIASRLTRTYTN 115
            +A   V   L D   EK      FD+    +     G+ ++ + F  ++A+ L     +
Sbjct: 360 ASALGFVREWLADADMEK----AGFDLHRTELSLAWHGIALKGISFDIQLAAYLLDPTDS 415

Query: 116 QHGLKDNLKEL 126
              +     + 
Sbjct: 416 TQSISGLCGKY 426


>gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 719

 Score = 40.4 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 23/117 (19%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRV-RPVFCTKIASRLTRTYTNQHG 118
            P       D     + H   FD+  L       GVR  +PV  T + + +     + HG
Sbjct: 601 LPAFHAFAADT--VLVGHNVAFDMRFLTLKENASGVRFDQPVLDTLLLAAIVHPGEDSHG 658

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           L+      LGI +S                    A  D +    + L+    L++ G
Sbjct: 659 LEAMAAR-LGIAVSGRHT----------------ALGDALATAEIFLKLLPLLRQRG 698


>gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group]
          Length = 1028

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 48/173 (27%), Gaps = 47/173 (27%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + +  +  G+           D   +K++H   FD  V+    G++V      
Sbjct: 311 FGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIKKVWHNYSFDNHVIEN-CGIKVAGFHAD 369

Query: 103 TKIASRL---TRTYTNQHGLKDNL---------------------KELLG---------- 128
           T   +RL   +R     + L+                        K + G          
Sbjct: 370 TMHLARLWDSSRRADGGYSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKKVRKNGSE 429

Query: 129 -----INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
                I   +  Q  D    +L    + Y++ D +    L      KL+    
Sbjct: 430 GKTISIEPVEKLQRED---REL---WICYSSLDSMSTLKLYESLKNKLEAKEW 476


>gi|39941984|ref|XP_360529.1| hypothetical protein MGG_10841 [Magnaporthe oryzae 70-15]
 gi|145021652|gb|EDK05781.1| hypothetical protein MGG_10841 [Magnaporthe oryzae 70-15]
          Length = 720

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 46/161 (28%), Gaps = 35/161 (21%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCI--VQLSPGDGTVDIIRIAAG---- 59
           V E DI         +  A+D E     P    L +  V +   DG V +  +       
Sbjct: 297 VPEADIQQGSITAGREIFAIDCEMCRTGPTNHDLSLTRVTILSWDGEVVMDELVKPSLPI 356

Query: 60  ------------------QKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
                                 P+    L+ +L       + H    D+  L        
Sbjct: 357 LDYLTQFSGITKEMLEPVTTTLPDIQKRLLELLTPRSIL-VGHSLDSDMKALQ-----MA 410

Query: 98  RP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
            P V  T I      +   +H LK    + LG  + K + S
Sbjct: 411 HPFVVDTSILFPNPSSPNGKHSLKHLASKYLGRQVQKDEGS 451


>gi|301120167|ref|XP_002907811.1| glycoside hydrolase-like protein [Phytophthora infestans T30-4]
 gi|262106323|gb|EEY64375.1| glycoside hydrolase-like protein [Phytophthora infestans T30-4]
          Length = 165

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 13/88 (14%)

Query: 4   IRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           I   + +       R    + VDTE     P  R        + G+       +  G+  
Sbjct: 31  IHSEQEEQEHAEYLREQKVVGVDTEA---RPDFRPLKG----ATGNPV-----LQRGKPL 78

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLF 90
            P L  + VD    K+ H    D   L 
Sbjct: 79  PPVLQELFVDPDVLKVGHSLSDDFRQLK 106


>gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C]
 gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
 gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon
 gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C]
 gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
          Length = 229

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 36/153 (23%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113
           A + +  + D K   + H   FD+  L +   +          +     T + +R +   
Sbjct: 77  ADDFLEFIADSKL--VIHNAPFDVKFLNHELSLLKRAEIKLLELEHAIDTLVMAR-SMFP 133

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
            +++ L    K              D S       QL  A  D   L  + ++ T     
Sbjct: 134 GSKYSLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVELTG---- 174

Query: 174 LGRSDLATSCCNFLMDRAELDLLGWENVDIFSH 206
            GR     S    L   A+++ L +  +D  +H
Sbjct: 175 -GR----QSAFKMLDKAAKINNLSYNRLDSQAH 202


>gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
 gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
          Length = 896

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 23/193 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA------GQKNAPNLVGMLVDEKRE 76
           ++ DTET  L  +  +L     +  +     + I         Q +       ++   R 
Sbjct: 330 VSFDTETSDLDVKNAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAKNAIIQLNRY 389

Query: 77  K-IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI---- 131
           K +    ++D  ++   F + +R    T I S L  T   + GL   + +     +    
Sbjct: 390 KLVLQNFKYDYEIIKNNFDIELRLYADTMILSWLLNT-NEKVGLDYQIDKYFDHKMISFT 448

Query: 132 ---SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF---TEKLQRLGRSDLA-TSCC 184
               K +  S+       +   +YAA D +    L  +     ++ +     +LA     
Sbjct: 449 DVVKKGENFSNVDI----ERACEYAAEDALMTLRLFKKQLEIFKEKEEEEILNLAFEVEF 504

Query: 185 NFLMDRAELDLLG 197
           +F+   A +++ G
Sbjct: 505 DFIYVLANMEMNG 517


>gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 1402

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 53/206 (25%)

Query: 22  AIAVDTETLGLMPRRDRLCIV--------QLS-------PGDGTVDIIRIAAGQ------ 60
            + VD ET G   +RDR+  +        Q++         +G +  +RI+         
Sbjct: 390 FVVVDIETTGFDSQRDRIIEIGAVKIENGQITDRFSTFVDPEGKI-PVRISELTGIYQDM 448

Query: 61  -KNAPNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIASRL 109
              AP L+                + H  +FDI  L   +   G+        T   SR 
Sbjct: 449 VDKAPKLIDAILEFERFASGSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELSRR 507

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
             T  + + L   + E L + +    +                A SD      + +   E
Sbjct: 508 LLTDLSSYKLNK-VAEFLNVELRHHHR----------------ADSDAETTAGIFISLLE 550

Query: 170 KLQRLGRSDLATSCCNFLMDRAELDL 195
           +L+  G         N +   A+ DL
Sbjct: 551 RLKARG-YKWLK-ELNSIESNAKADL 574


>gi|269861493|ref|XP_002650452.1| E3 ubiquitin ligase [Enterocytozoon bieneusi H348]
 gi|220066093|gb|EED43599.1| E3 ubiquitin ligase [Enterocytozoon bieneusi H348]
          Length = 372

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 12/81 (14%)

Query: 30  LGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL 89
                 +  +C + +    GT+ II     ++  P L  +  +   +KI H     + +L
Sbjct: 146 HRYRTYQPFICWITIYVPAGTLYIIDSLKFRQVLPKLNLLKCN--IKKIIH-CEECVKLL 202

Query: 90  FYTFG---------VRVRPVF 101
           +  FG            + +F
Sbjct: 203 YEEFGEIGCYVNFNYIPKNIF 223


>gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1042

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-C 102
              G   + I  +  G+               +K++H   FD  VL    G+  +     
Sbjct: 669 FGDGKNRLWIDVLDGGEDVLKVFKRYFESPSIKKVWHNYSFDKHVLGRH-GIHPQGFHAD 727

Query: 103 TKIASRL 109
           T   +RL
Sbjct: 728 TIHLARL 734


>gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
 gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
          Length = 229

 Score = 40.4 bits (94), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 27/115 (23%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113
           A + +  + D K   + H   FDI  L +   +          +     T + +R +   
Sbjct: 77  ADDFLEFIADSKL--VIHNAPFDIKFLNHELSLLKRAEIKLLELSNAIDTLVMAR-SMFP 133

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            +++ L    K              D S       QL  A  D   L  + ++ T
Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVELT 173


>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1444

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FDI  L         G    PV  T   +R        H L    K+   I ++
Sbjct: 511 VAHNASFDIGFLNAGLARMGRGKIANPVIDTLELARFLYPDLKNHRLNTLCKKF-DIELT 569

Query: 133 KAQQS 137
           +  ++
Sbjct: 570 QHHRA 574


>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
 gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1444

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FDI  L         G    PV  T   +R        H L    K+   I ++
Sbjct: 511 VAHNASFDIGFLNAGLARMGRGKIANPVIDTLELARFLYPDLKNHRLNTLCKKF-DIELT 569

Query: 133 KAQQS 137
           +  ++
Sbjct: 570 QHHRA 574


>gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977]
 gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus]
          Length = 902

 Score = 40.4 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 31/102 (30%), Gaps = 13/102 (12%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL----FYTFGVRVRPV 100
           + GDG   I        +   L   L D  R K  H  +  I  L    +   GV     
Sbjct: 360 ADGDG-AYIDTTTVTPDDEAALAEWLADAARPKALHEAKQAIHALAGRGWELGGVTS--- 415

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINI----SKAQQSS 138
             T +A+ L R       L D     L   +       QQ S
Sbjct: 416 -DTALAAYLVRPGQRSFALDDLSLRYLRRELRAEDDGEQQLS 456


>gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae
           86-028NP]
 gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP]
          Length = 255

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 61/201 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L    +  LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYLGKRNNLDALCER-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFTEKLQRLGRSDLATSC 183
           + L  T      G+++L    
Sbjct: 172 VYLMMTG-----GQTNLFDEE 187


>gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
 gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
          Length = 1424

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDIIRIAAG-- 59
               +    +  D ET GL     D   ++Q++             D  +D     +   
Sbjct: 378 NLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIVEQFDEFIDPGHPLSAFT 434

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      K A  LV +L +     +    + H   FD+  +      +     ++P
Sbjct: 435 TELTGITDNHVKGAKPLVQVLQEFQEFCQGTVLVAHNATFDVGFMNANYERHQLPTILQP 494

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 495 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 526


>gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 651

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102
           +  D  V ++ +A G+K    ++ ++ +    K  H   F+   L    G ++      C
Sbjct: 31  AVDDEPVKVVDLACGEKIPSEVLDLIDEPAIIKYAHNAVFERLCLSRYLGTQLDTDQWHC 90

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           + I + +         LKD +  +LG++  K 
Sbjct: 91  SMIHAMMLGLPA---SLKD-VGAVLGLSEDKQ 118


>gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI]
 gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 937

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 30/144 (20%)

Query: 21  DAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDII--------RIAAGQKNAPNL--V 67
           + +  D ET GL P  DR+    +V+L      VDI          +    KN   L   
Sbjct: 4   EIVVCDLETTGLDPLSDRIIEIGLVRLKDLK-IVDIYHTMVNPGRPLPLKIKNLTGLDDS 62

Query: 68  GMLVDEK----REKIF----------HYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRT 112
            +         REK+           H  RFD+  L    G+  + P + T   +RL   
Sbjct: 63  DLASAPAFSGVREKVLGFIGDAPIAGHNIRFDMGFLAAAGGISFKNPAYDTVELARLAVP 122

Query: 113 YTNQHGLKDNLKELLGINISKAQQ 136
               + L+   +  L +  +   +
Sbjct: 123 GLPTYRLESLCER-LNVEAAARHR 145


>gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018]
 gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018]
          Length = 896

 Score = 40.0 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 23/193 (11%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAA------GQKNAPNLVGMLVDEKRE 76
           ++ DTET  L  +  +L     +  +     + I         Q +       ++   R 
Sbjct: 330 VSFDTETSDLDVKNAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAKNAIIQLNRY 389

Query: 77  K-IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI---- 131
           K +    ++D  ++   F + +R    T I S L  T   + GL   + +     +    
Sbjct: 390 KLVLQNFKYDYEIIKNNFDIELRLYADTMILSWLLNT-NEKVGLDYQIDKYFDHKMISFT 448

Query: 132 ---SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF---TEKLQRLGRSDLA-TSCC 184
               K +  S+       +   +YAA D +    L  +     ++ +     +LA     
Sbjct: 449 DVVKKGENFSNVDI----ERACEYAAEDALMTLRLFKKQLEIFKEKEEEEILNLAFEVEF 504

Query: 185 NFLMDRAELDLLG 197
           +F+   A +++ G
Sbjct: 505 DFIYVLANMEMNG 517


>gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397]
 gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall]
 gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC
           3502]
 gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. Hall]
          Length = 1432

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108
           +    A  K  P  +  + D     + H   FD++ +        +     V  T   SR
Sbjct: 477 VDDKEAIDKILPRFIDFIGDS--VVVAHNASFDVSFINKNCKDLKIEFENSVMDTVTLSR 534

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
                  ++ L + + + LGI++    ++ D
Sbjct: 535 FLFPELKRYKL-NVIAKHLGISLENHHRAVD 564


>gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41301]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4]
 gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae
           TIGR4]
 gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae TIGR4]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47901]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41317]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54]
 gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae G54]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
 gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus
           kaustophilus HTA426]
          Length = 1444

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FDI  L         G    PV  T   +R        H L    K+   I ++
Sbjct: 511 VAHNASFDIGFLNTGLARMGRGKIANPVIDTLELARFLYPDLKNHRLNTLCKKF-DIELT 569

Query: 133 KAQQS 137
           +  ++
Sbjct: 570 QHHRA 574


>gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Taiwan19F-14]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
 gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|32442297|gb|AAP82219.1| DNA polymerase [Podovirus GOM]
          Length = 397

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 102 CTKIASRLTRT-YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            T + S L+     + H L+   + L     SK    +DW+   L+ +  +Y   DV   
Sbjct: 1   DTLVMSSLSNPNREDGHSLRAWGERL---GFSKGD-HTDWTR--LTPDMEKYCVRDVEVT 54

Query: 161 HALRLQFTEKLQ 172
             L     ++L 
Sbjct: 55  EKLYQHLLKELD 66


>gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus
           pneumoniae 670-6B]
 gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 670-6B]
 gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17545]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810]
          Length = 255

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 61/201 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L    +  LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCER-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFTEKLQRLGRSDLATSC 183
           + L  T      G+++L    
Sbjct: 172 VYLMMTG-----GQTNLFDEE 187


>gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
 gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200]
 gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6]
 gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39]
 gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6]
 gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae D39]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
          Length = 1449

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 504 VAHNAPFDMGFIKRDIKEYLNIDLECSVIDTLQMARDLFPDFKKYGLGDL-NKALGLALE 562

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 563 KHHRAVD 569


>gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str.
           Wilmington]
 gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon
 gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 229

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           I H   FDI  L +   +          +     T + +R +     ++ L    K    
Sbjct: 90  IIHNAPFDIKFLNHELSLLKRTEIKFLELTNTIDTLVMAR-SMFPGARYSLDALCKRF-- 146

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                     D S       QL  A  D   L  + +  T
Sbjct: 147 --------KVDNSGR-----QLHGALKDAALLAEVYVALT 173


>gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 643

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102
           S  DG V +I +A+G+     ++  L DE  EK      F+   L      R++P   +C
Sbjct: 38  SIDDGEVKVIDLASGEIIPEEILSALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYC 97

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           T I S           L+  + E+L   + K 
Sbjct: 98  TMIWSAYLGLPL---SLEK-VGEVL--KLDKQ 123


>gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
          Length = 1463

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|229005847|ref|ZP_04163541.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4]
 gi|228755311|gb|EEM04662.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4]
          Length = 286

 Score = 40.0 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRPV-FCTKIASRLTR 111
              Q+  P  +  L ++    + H   FD+  L     +      + +   T   ++   
Sbjct: 44  PTIQEVLPLFLAFLGEDTI--VAHNASFDMRFLKSNANMLRLPEPKNIVIDTVFLAKRYM 101

Query: 112 TYTNQHGLKDNLKELLGINIS 132
            +   H L+   K +LGI +S
Sbjct: 102 KHAPNHKLETL-KRMLGIRLS 121


>gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454]
 gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
          Length = 927

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 29/177 (16%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGMLVDEKR 75
           DTET  L P R R+  V  +   G    + +A    + P           L   L     
Sbjct: 355 DTETTSLDPMRARIVGVSFATEPGRAAYVPLAHRGPDHPVQLPRDEVLARLKPWLESPAH 414

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           +K+  + ++D  VL    G+ +  +   T + S +  ++   H + +     LG+   K 
Sbjct: 415 KKVGQHLKYDAQVLASH-GITLAGIEHDTLLESYVLESHRP-HDMDNLATRHLGVKTIKY 472

Query: 135 QQSSDWSADDLSDEQL-----------QYAASDVVHLHALRLQFTEKLQRLGRSDLA 180
           +  +   A      Q+           +Y+A D      L      ++Q     D  
Sbjct: 473 EDVAGKGA-----AQIGFDEVSVDVATEYSAEDADITLRLHQVLYPQIQVEKGLDYV 524


>gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46]
 gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46]
          Length = 881

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 13/129 (10%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRL 109
            V +       ++A  L   L      K+ H  +  + VL+      V  +  T +A+ L
Sbjct: 354 AVSLDLGELSAEDADALREWLA-GDHPKLVHDSKSAMHVLWNYDFELVGVIHDTFLAAYL 412

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVH---LHALRLQ 166
            R     + L + ++  LG  +      +D     L    L   A D  H   +  L  +
Sbjct: 413 LRPSQRSYSLDNVVQRHLGQTL----SQAD-GQMTL----LDGPAEDASHVAAVIDLAER 463

Query: 167 FTEKLQRLG 175
              +L   G
Sbjct: 464 LAVELDEAG 472


>gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
 gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
          Length = 910

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
 gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
          Length = 470

 Score = 40.0 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 49/199 (24%)

Query: 3   TIRVHEGDIPAECAARYVDAIAV---DTETLGLMPRRDRLCIVQLS----------PGDG 49
              + E D       R +++++    DTET GLMP +D +  VQ+           PG+ 
Sbjct: 256 DFALQEHDSERALLKRPLESLSFTVFDTETTGLMPNKDEI--VQIGAVRVVNGKIVPGEV 313

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKR--------------------EKIFHYGRFDIAVL 89
              ++        A   V  + DE                        + H   FD+A L
Sbjct: 314 IDQLVDPGRPIPPASTKVHGITDEMVKGAPDAVTSVQQFHTFAKDSVIVAHNAPFDMAFL 373

Query: 90  FYTFG----VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDL 145
                        P+  T + S +    T  H L       LG+ I    + +      L
Sbjct: 374 HRYGRESGLEWDHPIMDTVLLSAVVYGTTEIHTLDALCDR-LGVTIPVELRHT-----AL 427

Query: 146 SDEQLQYAASDVV-HLHAL 163
            D Q   A ++V+ HL  +
Sbjct: 428 GDAQ---ATAEVLCHLLPI 443


>gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2]
          Length = 888

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 14/159 (8%)

Query: 46  PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTK 104
             D    +    AG+ +   L   L  +    I H  +  I   + + G+ V  V   T 
Sbjct: 352 APDEAWVVDLAEAGEADVSKLSSALRSKTL--ILHSSKTQIKA-WRSLGLDVDDVAGDTA 408

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL-----QYAASDVVH 159
           +A+ L       + L+    E  GI +S A+  S   A DL  +Q        AA+    
Sbjct: 409 LAAYLLVPDQRSYELQQIALERAGIELSDAESDSGQLALDLESDQTAQTHGHRAAA---- 464

Query: 160 LHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
           L  +      K+     S +        +   A ++L G
Sbjct: 465 LLEVHDILAAKIDEANMSQVYRDIELPLVPVLARMELAG 503


>gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 950

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105
           +  I+ +         L   L  E    I H  +     L +  G        P+F TK+
Sbjct: 406 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 461

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           A  L +   +   LK   +  L I+ ++ +Q S
Sbjct: 462 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494


>gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
          Length = 950

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105
           +  I+ +         L   L  E    I H  +     L +  G        P+F TK+
Sbjct: 406 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 461

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           A  L +   +   LK   +  L I+ ++ +Q S
Sbjct: 462 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494


>gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 1439

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 8/92 (8%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-----RVRPVFCTKIAS 107
           ++     +      V  + D     + H  RFDI  +            + PV  T   +
Sbjct: 482 VVDAPELEPKLREFVEFIGDA--VLVAHNARFDIGFIQANCKAIGLPEVMNPVLDTLELA 539

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           R        H L         IN+    ++ D
Sbjct: 540 RFLHPSMKNHRLNTLSARY-KINLENHHRAID 570


>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
 gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           casei ATCC 334]
          Length = 1444

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 40/169 (23%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59
           T   +  D P + A+   + +  D ET GL    D+  +++L+     DG V I +    
Sbjct: 404 TPVAYRADEPRDLAS--AEYVVFDVETTGLSAVYDK--VIELAAVKMKDGKV-IDQFEEM 458

Query: 60  QKNAPNLVGMLVD---------------EKREKIF-----------HYGRFDIAVL---- 89
                 L  + ++                   K+F           H   FD+  L    
Sbjct: 459 IDPGFPLSELTINLTHITDDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGY 518

Query: 90  -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             +       PV  T   SR+       H L    K+   +++    ++
Sbjct: 519 ERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566


>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 1437

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 40/169 (23%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59
           T   +  D P + A+   + +  D ET GL    D+  +++L+     DG V I +    
Sbjct: 397 TPVAYRADEPRDLAS--AEYVVFDVETTGLSAVYDK--VIELAAVKMKDGKV-IDQFEEM 451

Query: 60  QKNAPNLVGMLVD---------------EKREKIF-----------HYGRFDIAVL---- 89
                 L  + ++                   K+F           H   FD+  L    
Sbjct: 452 IDPGFPLSELTINLTHITDDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGY 511

Query: 90  -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             +       PV  T   SR+       H L    K+   +++    ++
Sbjct: 512 ERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 559


>gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
 gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
          Length = 950

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105
           +  I+ +         L   L  E    I H  +     L +  G        P+F TK+
Sbjct: 406 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 461

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           A  L +   +   LK   +  L I+ ++ +Q S
Sbjct: 462 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494


>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
 gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
          Length = 913

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 21/167 (12%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIA----------AGQKNAPNLVGMLVDEK 74
           +DTET  L     RL  + LS   G    I +A                  L   L +  
Sbjct: 340 LDTETTSLDSMTARLVGISLSVKPGFAAYIPLAHHPIEVAKQLPLDHVLKKLKSWLENPA 399

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINI-- 131
           ++K+    ++D  +      + ++ +   T + S +  ++  +H +    + LL      
Sbjct: 400 KKKVGQNLKYDSHIFANYH-IHLQGIAHDTLLESYVLESH-RRHDMDSLSERLLDYKPIS 457

Query: 132 -----SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
                 K      +   +L     +YAA D      L      ++++
Sbjct: 458 YEEICGKGASQIGFDQIELDCA-TRYAAEDADITFQLHENMWPRIEK 503


>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
 gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
 gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei LC2W]
 gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei BD-II]
          Length = 1444

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 40/169 (23%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59
           T   +  D P + A+   + +  D ET GL    D+  +++L+     DG V I +    
Sbjct: 404 TPVAYRADEPRDLAS--AEYVVFDVETTGLSAVYDK--VIELAAVKMKDGKV-IDQFEEM 458

Query: 60  QKNAPNLVGMLVD---------------EKREKIF-----------HYGRFDIAVL---- 89
                 L  + ++                   K+F           H   FD+  L    
Sbjct: 459 IDPGFPLSELTINLTHITDDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGY 518

Query: 90  -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             +       PV  T   SR+       H L    K+   +++    ++
Sbjct: 519 ERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566


>gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8]
          Length = 955

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105
           +  I+ +         L   L  E    I H  +     L +  G        P+F TK+
Sbjct: 411 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 466

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           A  L +   +   LK   +  L I+ ++ +Q S
Sbjct: 467 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 499


>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
 gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
          Length = 788

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 43/168 (25%)

Query: 47  GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105
           G   V +  +  G            + + +KI+H   FD  +L    G++    +  T  
Sbjct: 66  GKSRVWVDLLNGGPGILDVFRPYFENAEIKKIWHNYSFDKHILGNY-GIKAAGFYADTMH 124

Query: 106 ASRLTRTYTNQHGL--------------------KDNLKELLGINISKA----------- 134
            +RL  +     G                     K ++K+L  I   K            
Sbjct: 125 LARLWDSARGGLGYSLEALTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIP 184

Query: 135 -----QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
                Q S D       D+ + Y+A D V    L     +KL +    
Sbjct: 185 PVEELQTSKD--TR---DKWIYYSAHDSVCTWHLWSSLKKKLLKASWY 227


>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei str. Zhang]
          Length = 1444

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 40/169 (23%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59
           T   +  D P + A+   + +  D ET GL    D+  +++L+     DG V I +    
Sbjct: 404 TPVAYRADEPRDLAS--AEYVVFDVETTGLSAVYDK--VIELAAVKMKDGKV-IDQFEEM 458

Query: 60  QKNAPNLVGMLVD---------------EKREKIF-----------HYGRFDIAVL---- 89
                 L  + ++                   K+F           H   FD+  L    
Sbjct: 459 IDPGFPLSELTINLTHITDDMVHGSKSEVDVFKLFQQFCDGAIMVGHNVTFDVGFLDNGY 518

Query: 90  -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             +       PV  T   SR+       H L    K+   +++    ++
Sbjct: 519 ERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566


>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
 gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1433

 Score = 40.0 bits (93), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 35/151 (23%)

Query: 21  DAIAVDTETLGLMPRRDRLCIV--------QLSPGDGTVD---------IIRIAAGQ--- 60
           D +  D ET GL P++DR+  +        Q+                 I+++       
Sbjct: 421 DFVVFDIETTGLNPQQDRITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITNDM 480

Query: 61  -KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRV----RPVFCTKIASRLT 110
            K+AP +  +L +     +    + H   FD+  + +   +       P   T     L 
Sbjct: 481 VKDAPPIEQVLNEFMEFIQGSVLVAHNANFDVGFIKHNAKIIGEKVKNPYLDTL---ELC 537

Query: 111 RTYTNQHG-LK-DNLKELLGINISKAQQSSD 139
           R    + G  K + + + L I +    ++ D
Sbjct: 538 RKMFPELGRYKLNIVAKHLKIELENHHRAVD 568


>gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5]
 gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5]
          Length = 909

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVF-CTKIASRLTR 111
                   +   L G L D +R K+ H  +   AVL F   G  ++ +   T+IA+ L R
Sbjct: 375 DPSRLDADDEAALAGWLADAERPKVLHDSK--PAVLAFAAHGWELQGIARDTQIAAYLAR 432

Query: 112 TYTNQHGLKDNLKELLGINI 131
                + L D     L   +
Sbjct: 433 PDQRSYDLTDLALRYLHREL 452


>gi|167538020|ref|XP_001750676.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770810|gb|EDQ84489.1| predicted protein [Monosiga brevicollis MX1]
          Length = 733

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 24/88 (27%)

Query: 83  RFDIAVLFYTFGVRVRPVFC--------TKIASRLTRTYTNQHG----LKDNLKELLGIN 130
           R DIA ++  +GV V P+          T  AS          G     + ++K      
Sbjct: 85  REDIAKIYIDYGVAVEPIHDLRDILAPETGSASVFEAFQREFPGGTFRYQRDVK------ 138

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVV 158
                 SSDW   DL + Q+  AA D  
Sbjct: 139 ------SSDWWRRDLDEAQISLAAFDAW 160


>gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4]
 gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4]
          Length = 899

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR--------FDIAVLFYTFGVR 96
           + G  +  +   A G  +   L G L D+   K  H  +         D+       GV 
Sbjct: 348 AAGGASAHVDLAAIGPDDEQALQGWLGDDAVHKAVHDAKAATHALMGRDL----RLGGVT 403

Query: 97  VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
                   +A+ L R     +GL +  +  L   + +A+
Sbjct: 404 ----MDVALAAYLVRPGQRSYGLAELFQRHLRRELPEAE 438


>gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1449

 Score = 40.0 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYT----FGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +         + +   V  T   +R       ++GL D   + LG+ + 
Sbjct: 504 VAHNAPFDMGFIKRDIKEYLNIDLENSVIDTLQMARDLFPDFKKYGLGDL-NKSLGLALE 562

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 563 KHHRAVD 569


>gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
           Madrid E]
 gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon
 gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii]
 gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22]
          Length = 229

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 30/123 (24%)

Query: 60  QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKI 105
            K+ P    +  D          I H   FDI  L +   +          +     T +
Sbjct: 67  LKDKPLFKTIANDFLKFIADSTLIIHNAPFDIKFLNHELSLLKRTEIKFLELTNTIDTLV 126

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
            +R       ++ L    K              D S       QL  A  D   L  + +
Sbjct: 127 MAR-NMFPGARYSLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYV 170

Query: 166 QFT 168
             T
Sbjct: 171 ALT 173


>gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 595

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 21/122 (17%)

Query: 57  AAGQKNAPNLVGML-VDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASR-- 108
              ++  P L+  L  +     + H   FD   L      +       PV  T   +R  
Sbjct: 89  PPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYPVVDTLRLARAV 148

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           L R  T  H L        G+ ++   ++            L+ A + V  LH L  +  
Sbjct: 149 LARGETRNHRLATLAA-YFGVPVAPNHRA------------LEDARATVGVLHGLVERLR 195

Query: 169 EK 170
             
Sbjct: 196 PM 197


>gi|125571950|gb|EAZ13465.1| hypothetical protein OsJ_03382 [Oryza sativa Japonica Group]
          Length = 287

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGV 95
           + ++Q+  G     + +I         L   L D +   +    H    D+  L   + +
Sbjct: 151 VAVLQICVG-RRCLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHD---DVDKLREHYDL 206

Query: 96  RVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
            V        +A++          GL+  + E++ + + K    + S W +  L+ +Q+ 
Sbjct: 207 EVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVM 266

Query: 152 YAASD 156
           YA +D
Sbjct: 267 YACAD 271


>gi|32442301|gb|AAP82221.1| DNA polymerase [Podovirus GOM]
          Length = 399

 Score = 39.6 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 20/108 (18%)

Query: 102 CTKIASRLTRTYTNQHGLKDNLK-ELLGINISKAQQSSDWSAD----------------D 144
            T + SRL   Y N+       + + L   +  +     W                    
Sbjct: 1   DTLVLSRLV--YPNRRERDAIHRWKYLDTKLYGSHSLKAWGQRLDFAKGDYGQTEDAWEK 58

Query: 145 LSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           LS+  ++Y   DV   H L      KLQ      L       + +R E
Sbjct: 59  LSEAMVEYCIQDVELTHKLYGILKPKLQSRKALSL-EQELTVICNRQE 105


>gi|119490378|ref|ZP_01622856.1| hypothetical protein L8106_13790 [Lyngbya sp. PCC 8106]
 gi|119454037|gb|EAW35191.1| hypothetical protein L8106_13790 [Lyngbya sp. PCC 8106]
          Length = 829

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVF--CTKIASR 108
           IR+   +    N + ++ ++    +FHY   D+ VL+Y+F   G+    +   CT   S+
Sbjct: 44  IRVQMLETVLNNFIKVIQNK--ILVFHYAEHDLKVLYYSFKAAGITPPKLTIRCTWELSK 101

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                   + L+    + L + I+  + +S  +           A  D +  H L     
Sbjct: 102 FYYPRMQSYSLEAL-SKFLHLKINGKRFNSSLAHR---------AKYDALFTHQLYQHLM 151

Query: 169 EK 170
           ++
Sbjct: 152 KQ 153


>gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411]
 gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411]
          Length = 859

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 37  DRLCIVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-- 93
           ++L ++     D  V +  +A     +   L   L + +  K  H    D    ++T   
Sbjct: 330 EQLTLL---DRDNVVIVQDLADVAPKDEKALAEWLANPQATKWLH----DSKKAYHTLQN 382

Query: 94  -GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
            G+ +  V   T +A+ L R       L D ++  +G  +S+   
Sbjct: 383 QGLTLDGVEHDTSLAAYLLRPDVRTLSLADVVQRHVGHELSEGAT 427


>gi|224139642|ref|XP_002323207.1| predicted protein [Populus trichocarpa]
 gi|222867837|gb|EEF04968.1| predicted protein [Populus trichocarpa]
          Length = 215

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           A +L  +     G+K   +E+LG  I K      S W    L+  Q+QYA  D      +
Sbjct: 149 AEKLGDSRWKNSGVKRLAREVLGKEIEKPKRITLSRWDNPWLTPAQVQYACLDAFLSCKI 208

Query: 164 RLQFTE 169
                 
Sbjct: 209 GESLVA 214


>gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72]
          Length = 1462

 Score = 39.6 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 39/147 (26%), Gaps = 37/147 (25%)

Query: 14  ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67
           + A      +  D ET GL     D   ++Q++      G+   +               
Sbjct: 416 DMALGDATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472

Query: 68  GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99
             L              E+  K           + H   FD+  +      +      +P
Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHNLPKITQP 532

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           V  T   +R       +HGL    K  
Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
 gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
          Length = 707

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 21/102 (20%)

Query: 78  IFHYGRFDIAVLFYTFGV----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + H   FD+  +    G        PV  T + S     +T +H L+      LG+ IS 
Sbjct: 599 VAHNAAFDMKFIRLKEGQCGLKFENPVLDTLLLSVFLHDHTPEHTLEAIANR-LGVEISG 657

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
                              A  D +    +  Q    L+  G
Sbjct: 658 RHT----------------ALGDTLVTGEIFAQMLPLLEERG 683


>gi|195379354|ref|XP_002048444.1| GJ11350 [Drosophila virilis]
 gi|194155602|gb|EDW70786.1| GJ11350 [Drosophila virilis]
          Length = 282

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 17/148 (11%)

Query: 34  PRRDRLC---IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR--FDIAV 88
               R C   ++ ++  + T  +  + A       L  +L  E   KI HY     D+  
Sbjct: 83  SFYGRHCITSVMVIATANNT-YVFDLKALGVIFRELSVLLEAEYPRKIMHYSHRICDL-- 139

Query: 89  LFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK---------AQQSSD 139
           LF+   +R+  +  T +A  + R       L+D +  +  + +S+         ++   +
Sbjct: 140 LFHQHKLRINGICDTFVALCVARQDRCNCTLQDAISLIFELPLSELTCDEITSASESLRN 199

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQF 167
           ++A  LS  Q+QY     +  H L    
Sbjct: 200 FTARPLSRGQIQYLGKLAILQHKLHDTL 227


>gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
 gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus vestibularis F0396]
          Length = 1464

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDIIRIAAG-- 59
               +    +  D ET GL     D   ++Q++             D  +D     +   
Sbjct: 418 NLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIVEQFDEFIDPGHPLSAFT 474

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      K A  LV +L +     +    + H   FD+  +      +      +P
Sbjct: 475 TELTGITDNHVKGAKPLVQVLQEFQEFCQGTVLVAHNATFDVGFMNANYERHQLPTISQP 534

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 535 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566


>gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
 gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
          Length = 900

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           L  +      +K+ H  +  +       G+  + + F T++A+ L       + L+    
Sbjct: 378 LQALFA-PDIQKVVHGAKE-LEKELMDQGIEPQGIRFDTELAAYLLSPTDGSYDLEKLGI 435

Query: 125 ELLGINISK 133
                  +K
Sbjct: 436 TYYNQEFAK 444


>gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bifidobacterium longum DJO10A]
          Length = 682

 Score = 39.6 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105
           +  I+ +         L   L  E    I H  +     L +  G        P+F TK+
Sbjct: 138 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 193

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           A  L +   +   LK   +  L I+ ++ +Q S
Sbjct: 194 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 226


>gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
 gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
          Length = 281

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 52/147 (35%), Gaps = 30/147 (20%)

Query: 10  DIPAECAARYVDAIA-VDTETLGLMPRRDRL---CIVQL-----SPGDGTVDIIRIAAG- 59
           D+ +         +A VD ET G  P  DR+    ++++           VD ++     
Sbjct: 32  DLASLIHDADARPLAFVDLETTGGRPGLDRITEVGVIEVDRDGVRRWSTLVDPLQPIPPF 91

Query: 60  -----------QKNAPNLVGM---LVDEKREKIF--HYGRFDIAVLFYTF---GVRVRP- 99
                       + AP    +   L      K+F  H  RFD   L   F   G+R  P 
Sbjct: 92  VQQLTGITDAMVRGAPTFDALAAELARRLDGKLFIAHNARFDHGFLKKAFEQIGIRFDPD 151

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           V CT   SR      ++HGL    + L
Sbjct: 152 VLCTVRLSRALFPRESRHGLDALAQRL 178


>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
 gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
          Length = 905

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 19/171 (11%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI----------AAGQKNAPNLVGMLVDEK 74
           +DTET GL P R  L  +  S        I +                   L   L D  
Sbjct: 332 LDTETTGLDPMRAELVGISFSVEPHHGAYIPLGHRYTGVPRQLPLDFVLEKLKPWLTDPS 391

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
             K+    +FD  V     G+ ++ +   T + S +  ++   H + +     LGI    
Sbjct: 392 APKLGQNLKFDRHVFANH-GIGLKGIVHDTLLQSYVFESHRP-HDMDNLALRHLGIKTIT 449

Query: 134 AQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLGRSD 178
             + +   A  +  EQ+       YAA D      L      ++ +  + D
Sbjct: 450 YDEVTGKGAARIGFEQVDIERAAQYAAEDADVTLQLHQHLYAEVGKDAKLD 500


>gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM
           7]
 gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208]
 gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1437

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 33/158 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
           PA         +  D ET GL    D    L  V++  G+                   I
Sbjct: 411 PAHRLLEEDTYVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDKFEAFANPHHPLSATTI 470

Query: 55  RIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR------P 99
            +     +    AP++V ++ D          + H   FD+  L   +   ++      P
Sbjct: 471 ELTGITDDMVRDAPDVVDVVRDFKEWIGDDVLVAHNASFDMGFLNVAYKRLLKTEKAKNP 530

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           V  T   +R        H L    K+   I +++  ++
Sbjct: 531 VIDTLELARFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567


>gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42]
 gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42]
          Length = 1437

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 33/158 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
           PA         +  D ET GL    D    L  V++  G+                   I
Sbjct: 411 PAHRLLEEDTYVVFDVETTGLSAVYDTIIELAAVKIRGGEIIDKFEAFANPHHPLSATTI 470

Query: 55  RIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR------P 99
            +     +    AP++V ++ D          + H   FD+  L   +   ++      P
Sbjct: 471 ELTGITDDMVRDAPDVVDVVRDFKEWIGDDVLVAHNASFDMGFLNVAYKRLLKTEKAKNP 530

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           V  T   +R        H L    K+   I +++  ++
Sbjct: 531 VIDTLELARFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567


>gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
 gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
          Length = 899

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVF-CTKIASRLTR 111
                   +   L G L D +R K+ H  +   AVL F   G  +  +   T+IA+ L R
Sbjct: 365 DPSRLDADDEAALAGWLADAERPKVLHDSK--PAVLAFAAHGWELHGIARDTQIAAYLAR 422

Query: 112 TYTNQHGLKDNLKELLGINI 131
                + L D     L   +
Sbjct: 423 PDQRSYDLTDLALRYLHREL 442


>gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
 gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus salivarius SK126]
          Length = 1464

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSPG-----------DGTVDIIRIAAG-- 59
               +    +  D ET GL     D   ++Q++             D  +D     +   
Sbjct: 418 NLELKEATYVVFDVETTGLSAVHND---LIQIAASKMHKGNIIEQFDEFIDPGHPLSAFT 474

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      K A  LV +L +     +    + H   FD+  +      +      +P
Sbjct: 475 TELTGITDNHVKGAKPLVQVLQEFQEFCQGTVLVAHNATFDVGFMNANYERHQLPTISQP 534

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 535 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALD 566


>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
 gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 1469

 Score = 39.6 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 37/126 (29%), Gaps = 41/126 (32%)

Query: 73  EKREKIF-------HYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLK 120
           EK  KI        H   FD + L   F  + +     P+  T   SR        H LK
Sbjct: 482 EKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLK 541

Query: 121 DNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS-------DVVHLHALRLQFTEKLQR 173
           +  K                        +++YA         D   L  +   F  +L+ 
Sbjct: 542 NVAKRY----------------------EIEYAEEIAHRADYDAKILTTIWKNFLAELKS 579

Query: 174 LGRSDL 179
              +DL
Sbjct: 580 QNINDL 585


>gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
 gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
          Length = 186

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 36/158 (22%)

Query: 15  CAARYVDAIAVDTETLGLMPRRDRLCIVQL----SPGDGTVDIIRIAAG----------- 59
             A      A DTET GL P  +R  ++++       +G +    I              
Sbjct: 16  LFADGTVFTAFDTETTGLKPEYER--LIEIGAIRFDKNGIIARYDILINPGKPIPPGASA 73

Query: 60  --------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF---GVRV--RPVF 101
                    +N P +  +L D          + H   FD++ +       G         
Sbjct: 74  INNITDDMVRNCPLIESVLPDFLTFVRDSVLVAHNAGFDLSFVNKELERSGFNPLKNNAA 133

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
            T   +R        H L+       GI++  A ++ D
Sbjct: 134 DTVHLARSRFPQLPNHKLQSLAA-YFGIDVRNAHRAED 170


>gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
 gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
          Length = 474

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 32/139 (23%)

Query: 19  YVDAIAVDTETLGLMPRRDRLC-----------IVQ-----LSPGDGTVDIIRIAAGQKN 62
               + VD ET G  P RDR+            +VQ     ++PG      I+   G  +
Sbjct: 4   PARYVLVDLETTGAHPLRDRITEIAILRIERGQLVQRWESLINPGVPIPPTIQGVTGIDD 63

Query: 63  -----APNLVGM------LVDEKREKIFHYGRFDIAVL---FYTFGVRV-RPVFCTKIAS 107
                AP+   +      L+D+    + H  RFD   L   +   G     PV CT   S
Sbjct: 64  TMVAGAPDFAAVADTVAALLDDCVF-VAHNARFDYGFLKTAYAALGREFDAPVLCTVKLS 122

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R      ++HGL   ++  
Sbjct: 123 RALYPDHHRHGLDAIIERH 141


>gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
 gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
          Length = 1464

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 42/164 (25%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRI 56
            I  +E D+      +    +  D ET GL     D   ++Q++      G+   +    
Sbjct: 411 PITYNEVDME----LKEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEF 463

Query: 57  AAG------------------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89
                                 KNA  L  +L +     +    + H   FD+  +    
Sbjct: 464 INPGHPLSAFTTDLTGITDEHVKNAKPLEQVLQEFQDFCQDTVLVAHNATFDVGFMNVNY 523

Query: 90  -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
             +      +PV  T   +R       +HGL    K    +++ 
Sbjct: 524 ERHGLPRITQPVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 566


>gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 1415

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 35/150 (23%)

Query: 22  AIAVDTETLGLMPRRDRLC------------------IV--QLSPGDGTVDIIRI----- 56
            +  D ET GL P RD++                   ++  Q+   +   ++ RI     
Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQMLIPEKVQELTRITNALV 460

Query: 57  ---AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASRL 109
                 ++ AP     + D     + H  +FD A +   F       + P+  T   +R 
Sbjct: 461 ENEPTIEEVAPKFYDFIKDS--VLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFARA 518

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           T   T +  L    K+  G+++  A ++ +
Sbjct: 519 TVKDTKKFNLATLCKKF-GVSLVGAHRAVN 547


>gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 1449

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +       +       V  T   +R       ++GL D   + LG+ + 
Sbjct: 504 VAHNAPFDMGFIKRDIKEYLNIDLESSVIDTLQMARDLFPDFKKYGLGDL-NKSLGLALE 562

Query: 133 KAQQSSD 139
           K  ++ D
Sbjct: 563 KHHRAVD 569


>gi|322818894|gb|EFZ26175.1| hypothetical protein TCSYLVIO_7654 [Trypanosoma cruzi]
          Length = 173

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 10/95 (10%)

Query: 19  YVDAIAVDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVG----ML 70
              +IA+D E       +     R+ ++Q       V +         AP  V      L
Sbjct: 70  KARSIALDIEAF-CTTEQAKQLGRISLLQACSDAKPV-VFLFDVLTLTAPTFVKSVESFL 127

Query: 71  VDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105
            +    K+    R D+  L    G++   V   ++
Sbjct: 128 RNRGIRKLLFDCRRDVEALSSQLGLKPEGVLDLQV 162


>gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5]
 gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5]
          Length = 229

 Score = 39.6 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 27/114 (23%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113
           A + +  + D K   I H   FDI  L +   +          +     T + +R +   
Sbjct: 77  ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRTEIKLLELANTIDTLVMAR-SMFP 133

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +++ L    K              D S       QL  A  D   L  + ++ 
Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVEL 172


>gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1456

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 42/164 (25%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRI 56
            I  +E D+      +    +  D ET GL     D   ++Q++      G+   +    
Sbjct: 403 PITYNEVDME----LKEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEF 455

Query: 57  AAG------------------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---- 89
                                 KNA  L  +L +     +    + H   FD+  +    
Sbjct: 456 INPGHPLSAFTTDLTGITDEHVKNAKPLEQVLQEFQDFCQDTVLVAHNATFDVGFMNVNY 515

Query: 90  -FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
             +      +PV  T   +R       +HGL    K    +++ 
Sbjct: 516 ERHGLPRITQPVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 558


>gi|154308777|ref|XP_001553724.1| hypothetical protein BC1G_07811 [Botryotinia fuckeliana B05.10]
 gi|150852762|gb|EDN27954.1| hypothetical protein BC1G_07811 [Botryotinia fuckeliana B05.10]
          Length = 753

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 7/80 (8%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHG 118
           Q     LV +    +   I H    D+  L         P +  T +     R    +  
Sbjct: 396 QDIQKRLVELF-HPRTILIGHSLDSDLKALK-----LTHPYIIDTAVIYPHPRGRPLKSS 449

Query: 119 LKDNLKELLGINISKAQQSS 138
           LK   ++ LG  I K   ++
Sbjct: 450 LKWLAQKYLGKEIQKGHGAT 469


>gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
 gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
          Length = 898

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDI-AVL---FYTFGVRVRPVFCTKIASRLT 110
                ++++     +L D    KI H  +  I A L   +   G+    V  T+I + L 
Sbjct: 361 PALISEEDSAAFSALLSDPNVGKIGHSMKVQIHAWLGEGYTLAGI----VGDTEIDAYLL 416

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSS 138
                 +   D ++  L I++    Q +
Sbjct: 417 HPDQRTYDFTDLVQRYLAIDLGGGAQDT 444


>gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus lacrimalis 315-B]
 gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus lacrimalis 315-B]
          Length = 1415

 Score = 39.6 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 35/150 (23%)

Query: 22  AIAVDTETLGLMPRRDRLC------------------IV--QLSPGDGTVDIIRI----- 56
            +  D ET GL P RD++                   ++  Q+   +   ++ RI     
Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQMLIPEKVQELTRITNALV 460

Query: 57  ---AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASRL 109
                 ++ AP     + D     + H  +FD A +   F       + P+  T   +R 
Sbjct: 461 ENEPTIEEVAPKFYDFIKDS--VLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFARA 518

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           T   T +  L    K+  G+++  A ++ +
Sbjct: 519 TVKDTKKFNLATLCKKF-GVSLVGAHRAVN 547


>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 1449

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 53/198 (26%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGT--------------VD 52
           P     +    +  D ET GL   RDR  +++++      G                   
Sbjct: 419 PKNLKLKDATYVVFDVETTGLSAERDR--LIEIAAVKVKNGTEIDSFESYINPQRPISEL 476

Query: 53  IIRIA----AGQKNAPNLVGMLV------DEKREKIFHYGRFDIAVL---FYTFGVRVRP 99
           I R+        ++AP    ++       D+    + H  +FD+  L   F   G+  + 
Sbjct: 477 ITRLTSITNDDVRDAPLEKEVMTNFYNWLDKDDILVAHNAKFDLGFLDTCFERLGLENKN 536

Query: 100 --VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
                T   SR       +HGL +   +L  + + +  +                A  D 
Sbjct: 537 NASIDTLFVSRAENKEAKRHGLSNL-AKLYKVRLVQHHR----------------AIYDT 579

Query: 158 VHLHALRLQFTEKLQRLG 175
                + ++  ++L  LG
Sbjct: 580 KATAEIFVKMLDQLYELG 597


>gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
 gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK564]
          Length = 1463

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLSKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon
 gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2]
          Length = 229

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 27/115 (23%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113
           A + +  + D K   I H   FDI  L +   +          +     T + +R +   
Sbjct: 77  ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRAEIKLLELSNAIDTLVMAR-SMFP 133

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            +++ L    K              D S       QL  A  D   L  + ++ T
Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVELT 173


>gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 574

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 30/130 (23%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRV--RPVFCTKIAS 107
           ++     +   P+ +     E    + H   FD+  +       G      PV  T + +
Sbjct: 80  VVAAPKIESVLPSFLEF--AEGTTLVAHNAGFDLGFIKAACAAHGYPPPAHPVVDTVVLA 137

Query: 108 R--LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           R  LTR       L    +       SK +         L+D Q   A  DV+H      
Sbjct: 138 RKLLTRDEAPNCKLSTLARIF-----SKTEPR----HRALADAQ---ATVDVLH------ 179

Query: 166 QFTEKLQRLG 175
                L+R G
Sbjct: 180 ---ALLERAG 186


>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
          Length = 1436

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 11/87 (12%)

Query: 61  KNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLT 110
           K+AP +  ++ D     E    + H   FD+  L              PV  T   +R  
Sbjct: 481 KDAPEVSEVVTDFKKWAEDGILVAHNASFDMGFLNISYQRAGLKKASNPVIDTLELARFL 540

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQS 137
                 H L    K+ L + +++  ++
Sbjct: 541 YPSMKNHRLNTLAKK-LDVELTQHHRA 566


>gi|40807290|ref|NP_047956.2| gp11 [Streptomyces phage phiC31]
 gi|579076|emb|CAA53907.1| unnamed protein product [Streptomyces phage phiC31]
 gi|40313247|emb|CAA07135.2| gp11 [Streptomyces phage phiC31]
          Length = 617

 Score = 39.6 bits (92), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 4   IRVHEGDIPAEC-AARYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQ 60
           I   E D+      AR    +A+DTET GL       +L  VQ         +I    G 
Sbjct: 17  IPETERDLREFMHWARNKPELALDTETTGLAMYSSGYKLRTVQFGTA-HEAWVIHYELGG 75

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASRLTRTYTNQ 116
           + A     +L    R  + H   FD  VL     V           TKI + L      Q
Sbjct: 76  RFAEAADYVLKHCPRF-LIHNAPFDWLVLDAHTPVSMESLAPRTVDTKIKATLIDPRQPQ 134

Query: 117 HG 118
            G
Sbjct: 135 DG 136


>gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 955

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105
           +  I+ +             L  E    I H  +     L +  G        P+F TK+
Sbjct: 411 SAAIVPLPITDTLRAQFARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 466

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           A  L +   +   LK   +  L I+ ++ +Q S
Sbjct: 467 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 499


>gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 1438

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 42/169 (24%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----------------- 45
            I  ++  IP     +    +  DTET GL    DR  +++LS                 
Sbjct: 404 PITYNDKHIP----LKDATYVVFDTETTGLSAIYDR--VIELSAVKMKNSNVIDQFEEFI 457

Query: 46  ---------PGDGTVDIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL----- 89
                      + T     +  G K+   +  +  D  E    + H   FDI  +     
Sbjct: 458 DPGFHLSEQTTNLTSITDEMVHGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYV 517

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK-DNLKELLGINISKAQQS 137
            +       P+  T   +R    Y N  G + + L +   +N+    ++
Sbjct: 518 RHGMPEIKNPIIDTLTLARFL--YPNMRGYRLNTLAKKFDVNLEHHHRA 564


>gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
 gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
          Length = 1438

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 42/169 (24%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----------------- 45
            I  ++  IP     +    +  DTET GL    DR  +++LS                 
Sbjct: 404 PITYNDKHIP----LKDATYVVFDTETTGLSAIYDR--VIELSAVKMKNSNVIDQFEEFI 457

Query: 46  ---------PGDGTVDIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL----- 89
                      + T     +  G K+   +  +  D  E    + H   FDI  +     
Sbjct: 458 DPGFHLSEQTTNLTSITDEMVHGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYV 517

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK-DNLKELLGINISKAQQS 137
            +       P+  T   +R    Y N  G + + L +   +N+    ++
Sbjct: 518 RHGMPEIKNPIIDTLTLARFL--YPNMRGYRLNTLAKKFDVNLEHHHRA 564


>gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
 gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
          Length = 1438

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 42/169 (24%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----------------- 45
            I  ++  IP     +    +  DTET GL    DR  +++LS                 
Sbjct: 404 PITYNDKHIP----LKDATYVVFDTETTGLSAIYDR--VIELSAVKMKNSNVIDQFEEFI 457

Query: 46  ---------PGDGTVDIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL----- 89
                      + T     +  G K+   +  +  D  E    + H   FDI  +     
Sbjct: 458 DPGFHLSEQTTNLTSITDEMVHGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYV 517

Query: 90  FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK-DNLKELLGINISKAQQS 137
            +       P+  T   +R    Y N  G + + L +   +N+    ++
Sbjct: 518 RHGMPEIKNPIIDTLTLARFL--YPNMRGYRLNTLAKKFDVNLEHHHRA 564


>gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191]
 gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191]
          Length = 201

 Score = 39.6 bits (92), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 31/98 (31%)

Query: 25  VDTETLGLMPR-RDRLCIVQLSPGDGTVD-----------------IIRI---------- 56
           +DTET GL P    RLC + +      +                  +I I          
Sbjct: 16  LDTETTGLSPYDGARLCEIAVITNGALIAKSEYGTIINPRCVISQEVINIHGITNEMAAQ 75

Query: 57  -AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
               +  AP L+G+L D     + H   FDI  L   F
Sbjct: 76  APYFEDIAPLLIGLLTDSVI--VCHNADFDIPFLAAEF 111


>gi|223992595|ref|XP_002285981.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977296|gb|EED95622.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 438

 Score = 39.2 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 114 TNQHGLKDNLKELLGINISKAQQ--SSDWSADDLSDEQLQYA 153
           + + GL+D  + +LG+ ++K ++   S+W+   L+ EQ+ YA
Sbjct: 288 SRRSGLRDLAQTILGVEMNKNKRLAMSNWAVRHLTMEQISYA 329


>gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 882

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 25/153 (16%)

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119
               +L  +  DEK EKI +  + D+ +L     + ++ + + + I   L  +  +    
Sbjct: 356 DIVEDLRALFEDEKIEKIGYDAKEDVIILLSK-KIDLKNLTYDSMIVEYLLDSTASSFEF 414

Query: 120 KDNLKEL-----------LGINISKAQQSSDWSADDLSDEQLQYAASDVVHL---HALRL 165
           ++ + +            LG  + K    SD   D+L     +Y +     L     L+ 
Sbjct: 415 QNIISKYDLGSYKDEQSLLGKGVKKK-SYSDLEKDEL----FKYFS---FILNGSFKLKE 466

Query: 166 QFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
              EKL+ L   DL        L   A ++L G
Sbjct: 467 IQMEKLEELEMVDLYREIELPLLEVLAYMELTG 499


>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
 gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 1468

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 12/66 (18%)

Query: 73  EKREKIF-------HYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLK 120
           EK  KI        H   FD + L   F  + +     P+  T   SR        H LK
Sbjct: 481 EKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLK 540

Query: 121 DNLKEL 126
           +  K  
Sbjct: 541 NVAKRY 546


>gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 721

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 21/107 (19%)

Query: 73  EKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E    I H   FD+  L        +R  +PV  T + S +       H L   L+  LG
Sbjct: 611 EDTVLIAHNAAFDMRFLQLKEERTNIRFTQPVLDTLLLSAVVHPNQESHKLDVILER-LG 669

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           I I K                   A  D +    + L+  + L+  G
Sbjct: 670 ITIGKRHN----------------ALEDALATGEVFLKLVKLLEDQG 700


>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
 gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
          Length = 1469

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 12/66 (18%)

Query: 73  EKREKIF-------HYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLK 120
           EK  KI        H   FD + L   F  + +     P+  T   SR        H LK
Sbjct: 482 EKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLK 541

Query: 121 DNLKEL 126
           +  K  
Sbjct: 542 NVAKRY 547


>gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
 gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
          Length = 484

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 41/135 (30%), Gaps = 36/135 (26%)

Query: 26  DTETLGLMPRRDRLCIVQLSP----------GDGTVDIIRIAAGQKNA------------ 63
           DTET GL+P +D +  VQ+            G+    ++        A            
Sbjct: 281 DTETTGLLPHKDDI--VQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTAMV 338

Query: 64  ---PNLVGM-----LVDEKREKIFHYGRFDIAVLFYTFG----VRVRPVFCTKIASRLTR 111
              P++        L       + H   FD+A L             P+  T + S +  
Sbjct: 339 QGAPDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHPILDTVLLSAVLF 398

Query: 112 TYTNQHGLKDNLKEL 126
             +  H L    + L
Sbjct: 399 GASVPHTLDALCERL 413


>gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM
           2032]
 gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM
           2032]
          Length = 218

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 78  IFHYGRFDIAVLFYTFGVR----VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + H   FD A L     +       P+ CT +ASR     +  H L   +   LGI    
Sbjct: 89  VAHNAGFDRAFLDAELALIGRHQSNPMACTVLASRRLFPESPNHKLATLVNH-LGIFTDG 147

Query: 134 AQQSSDWSADDLSDEQLQ----YAASDVVH----LHALRLQFTEKLQRLGR 176
                      L+D ++      A +DV+     L  +     ++L R+GR
Sbjct: 148 TF------HRALADAEMTGHVWIAMTDVLCDRYGLDEIPFTLMQELGRIGR 192


>gi|304654266|gb|EFM47658.1| PsRxL467 [Phytophthora sojae]
          Length = 471

 Score = 39.2 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 37/159 (23%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
           V +  + + +         L   +  K++H   FD  VL+   G+ V+ +   T   +RL
Sbjct: 129 VWVDNLDSAEGTLQLFKDFLESREYLKVWHNYSFDRHVLYNH-GINVQGLGGDTMHMARL 187

Query: 110 TRTYTNQHG---LKDNL-----------KELLGI-NISKA---------------QQSSD 139
             T   QHG   L+              KEL GI  + K                Q+  +
Sbjct: 188 WNTARFQHGGYSLEALTADLLLQRKKPMKELFGIPKLRKDGSKGKERIMPTVEELQRFPE 247

Query: 140 WSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           +         ++Y+  D      L      KL +    +
Sbjct: 248 FRKR-----WIRYSVYDAESTWFLHRVLQHKLDQTFWFE 281


>gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
 gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
          Length = 1463

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKNTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|322823959|gb|EFZ29540.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 806

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 26/163 (15%)

Query: 16  AARYVDAIAVDTETLGLMPRRD----RLC-IVQLSPGDGTVDIIRIAAGQKNA----PNL 66
            A  V+ +AV    + L         RLC IV ++  +  +D+   AA          NL
Sbjct: 132 CAHSVEPVAV----VQLSTFSVTFVIRLCDIVYMARPENCIDVSEAAAVSSTLGVVLNNL 187

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVFCTKIA--SR-LTRTYTNQHGLKDN 122
             +L +++  K+      D   L   +   R+ P  C ++A  +R L  T  +  GL+  
Sbjct: 188 TSLLANKRVAKVGVGIIGDQEKLQREYTTFRLCP--CVELAVLARHLFPTAEDVMGLRSL 245

Query: 123 ---LKELLGINISKAQQ--SSDWSAD--DLSDEQLQYAASDVV 158
                   G N+ K      SDW +    LS  QL+YAA+D  
Sbjct: 246 KDFAARFAGRNLKKDILVICSDWGSSLGALSPLQLEYAAADAE 288


>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
          Length = 1447

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 12/66 (18%)

Query: 73  EKREKIF-------HYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLK 120
           EK  KI        H   FD + L   F  + +     P+  T   SR        H LK
Sbjct: 460 EKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRFLNPNEKSHSLK 519

Query: 121 DNLKEL 126
           +  K  
Sbjct: 520 NVAKRY 525


>gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 769

 Score = 39.2 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 34/123 (27%), Gaps = 23/123 (18%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRT 112
               K  P       D     I H   FD+  L       G+R   PV  T + S +   
Sbjct: 645 PTIDKVLPAFHAFAADT--VLIAHNAAFDMRFLQLKEEQTGLRFDHPVIDTLLLSAVVHP 702

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               H L+   +  LG+ I                     A  D +    + L+    L 
Sbjct: 703 NQESHRLEAIAER-LGLTIVGRHT----------------ALGDAIVTAEVFLKLIPLLA 745

Query: 173 RLG 175
             G
Sbjct: 746 EKG 748


>gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 887

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 27/165 (16%)

Query: 49  GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTK 104
            T  +  +     + PN   +        + H    D+  L + F  +   +    F T 
Sbjct: 354 ETALVEALLGALNDLPNADAL----GI--VGH----DLKALTHIFEAQGAQLVKMDFDTY 403

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQ-----QSSDWSADDLSD----EQLQYAAS 155
           +A+ L     N++ LK    + L   I   +       +      L++    E+  +   
Sbjct: 404 VAAYLLEPADNRYDLKSLAAKYLDQTIVGEEELLGKGRT---RRALAEIAAPERAAFIVG 460

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGWE 199
           +   +H L  +   +L+ +  + L        +   A ++ +G++
Sbjct: 461 ECAAIHGLHAELAHQLEEMEMTALYQKIELPLIPVLASMESIGFK 505


>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
 gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
          Length = 915

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 49/181 (27%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75
           DTET  L P   ++  + ++   G    I +A    +AP           L   L    +
Sbjct: 343 DTETTSLDPMVAQIVGISIAVEAGKAAYIPVAHHGPDAPVQLPRDEVLAKLKPWLESRDK 402

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLG------ 128
           +K+  + ++D  VL    G+ +  +   T + S +  ++   H + +     LG      
Sbjct: 403 KKVGQHLKYDEQVLANY-GITMDGIEHDTLLQSYVLESHRP-HDMDNLALRHLGLKTIKY 460

Query: 129 ---------------INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQR 173
                          + + KA                +YAA D      L      ++  
Sbjct: 461 EDVAGKGASQIGFDEVALDKAS---------------EYAAEDADITLRLHQTLYPQIAS 505

Query: 174 L 174
            
Sbjct: 506 E 506


>gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
 gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
          Length = 1023

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 29/143 (20%)

Query: 17  ARYVDA--IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ----------KNAP 64
           AR  DA  +A++     + P +  LC V LS        + +A  Q            AP
Sbjct: 426 ARIHDAGHVAIEIRANSIDPMQADLCGVALSLAPNDACYVPLAHKQSGGGAGLFDGGLAP 485

Query: 65  N----------LVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRVRPVFCTKIASRLTR 111
           +          L  +L      KI     FD+    V+    G+ +R     ++ S +  
Sbjct: 486 DQVKHADAIDALRPVLESSGILKI----GFDVKFTAVMLAQHGITLRNTDDAQLISYVLD 541

Query: 112 TYTNQHGLKDNLKELLGINISKA 134
                HGL+   +   G  + K 
Sbjct: 542 AGRGSHGLESLAERWFGHAMLKE 564


>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
          Length = 917

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   RL  +  S   G    + +A    + P           L   L   
Sbjct: 343 AFDTETTSLDPMTARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDEVLARLKPWLESA 402

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            R+K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 403 DRKKVGQHLKYDAQVLANY-GIELSGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 460

Query: 133 KAQ 135
           K +
Sbjct: 461 KYE 463


>gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205]
 gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205]
          Length = 899

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVF-CTKIASRLTR 111
                   +   L G L DE R K+ H  +   AVL F   G  +  +   T+IA+ L R
Sbjct: 365 DPGRLEAADESALAGWLADETRPKVLHDSK--PAVLAFAAHGWSIEGITRDTQIAAYLAR 422

Query: 112 TYTNQHGLKDNLKELLGINI 131
                + L D     L   +
Sbjct: 423 PDQRSYDLVDLALRYLHREL 442


>gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941]
 gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 560

 Score = 39.2 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 78  IFHYGRFDIAVLFYTFGVR--VRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD + L    G R    PV  T   +RL      ++ L   +   
Sbjct: 115 VAHNAGFDCSFLAAARGGRGLPNPVLDTLRLARLLVPGLRRYRLSALVSHF 165


>gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 645

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 21/106 (19%)

Query: 74  KREKIFHYGRFDIAVLF---YTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
               + H   FD+  L       GVR   PV  T + S++      +H L+   +  LG+
Sbjct: 536 DTVLVAHNAAFDLRFLELKERAAGVRFDMPVLDTLLLSQVLHPNQERHSLEAIAER-LGV 594

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            +                     A  D +    + L+    LQ  G
Sbjct: 595 PVLGRHT----------------ALGDAIVTAEVFLKMIPLLQVAG 624


>gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
 gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 14/121 (11%)

Query: 23  IAVDTETLGLMP--R----RDRLCIVQLSPGDGTVDIIRIAAGQKNAP---NLVGMLVDE 73
           + +D ET    P             + L       +++++      +P    L   L D 
Sbjct: 5   LWLDLETFSEKPIKYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQALSDP 64

Query: 74  KREKIFHYGRFDIAVLFYTF-GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
                 H   FD  +L ++   + V     T + + L        G    L E+LG+ + 
Sbjct: 65  NTIIYAHNSHFDRTMLNHSGIKIDVSRWRDTMVQA-LAHGLPGALG---ALCEVLGVPLD 120

Query: 133 K 133
           K
Sbjct: 121 K 121


>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
 gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 1442

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 13/88 (14%)

Query: 61  KNAPNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRL 109
           K+AP++  +L     + +       H   FDI  L         G  + PV  T   +R 
Sbjct: 487 KDAPDVEEVLR-RFIDWVGDSTLAAHNASFDIGFLNAGLAKMGLGKVINPVIDTLELARF 545

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQS 137
                  H L    K+   I +++  ++
Sbjct: 546 LYPDLKNHRLNTLCKKF-DIELTQHHRA 572


>gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
          Length = 256

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 61/201 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D +VD   I     
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRSVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKEIAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLDLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFTEKLQRLGRSDLATSC 183
           + L  T      G+++L    
Sbjct: 172 VYLMMTG-----GQTNLFDEE 187


>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
 gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
          Length = 896

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 39/177 (22%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP---NLVGMLVDE 73
               + I+ D ET  L P +  +  + LS        + +   +        +V +L ++
Sbjct: 332 LEKYEIISFDLETSSLDPYQADIVGIALSCKPFEGYFLYLYKEKDRWEITKEIVDLLNNK 391

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGI--- 129
           K   I    ++DI VL    G+ +  V F + IA+ L    + +  + D  KE L     
Sbjct: 392 KV--IGQNLKYDITVLKVN-GIELSKVHFDSMIAAYLLNPDSRRFNMDDLAKEYLDYKTI 448

Query: 130 ----------------NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
                           +I K                ++YA  D    + L      K
Sbjct: 449 KYKEVMGKDIKLLTLGDIDK--------KRV-----VEYAGEDADIAYRLFEVLKPK 492


>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1434

 Score = 39.2 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 13/88 (14%)

Query: 61  KNAPNLVGMLVDEKREKI------FHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRL 109
           K+AP++  +L     + +       H   FDI  L         G  + PV  T   +R 
Sbjct: 479 KDAPDVEEVLR-RFIDWVGDSTLAAHNASFDIGFLNAGLAKMGLGKVINPVIDTLELARF 537

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQS 137
                  H L    K+   I +++  ++
Sbjct: 538 LYPDLKNHRLNTLCKKF-DIELTQHHRA 564


>gi|303275682|ref|XP_003057135.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461487|gb|EEH58780.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 297

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 35/165 (21%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---- 93
           R+ ++QL    G   + R+        +++ ++       +    + D+  L   F    
Sbjct: 110 RVALLQLHA-RGLSVLTRLVGHATLHADILALMTHPNVILVGVGVKQDVRKLARDFPGGG 168

Query: 94  ------------------GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS--- 132
                              VRV  +    +A RL   +    GLK      L  ++S   
Sbjct: 169 GGDAAATTTTTKTTKTTTTVRVAELAD--VARRL--GHEGGCGLKALA---LANDVSTSH 221

Query: 133 --KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             K    ++W    LS  +++Y + D      +  +      R G
Sbjct: 222 KTKRLTMTNWEKPTLSPPEVRYGSQDASLGVDVAEKLRRSAARAG 266


>gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
 gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
          Length = 256

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 51/186 (27%), Gaps = 56/186 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       +  L    +  LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRSNLDALCER-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFT 168
           + L  T
Sbjct: 172 VYLMMT 177


>gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
 gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
          Length = 468

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 54/205 (26%)

Query: 12  PAECAARYVDAIA---VDTETLGLMPRRDRLCIVQLS----------PGDGTVDIIRIAA 58
           P    A  +  +    +DTET GL+P +D +  VQ+           PG+    ++    
Sbjct: 263 PGALDAMPLGRLTYTVLDTETTGLLPHKDEI--VQIGAVRIVNGRIVPGERMDQLVNPGR 320

Query: 59  GQKNAPNLVGMLVDEKR--------------------EKIFHYGRFDIAVLFYT---FGV 95
               A + V  + D                         + H   FD+A L       GV
Sbjct: 321 PIPPASSKVHGVTDAMVAGAPGIAEAGRRFHTFARDSVIVAHNAPFDMAFLHRHKTRMGV 380

Query: 96  R-VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
               P+  T + S +    +  H L       L + I    + +              A 
Sbjct: 381 EWTHPILDTVLLSAVLFGASQTHTLDALCDR-LAVTIPPNLRHT--------------AL 425

Query: 155 SDVVHLHALRLQFTEKLQRLGRSDL 179
            D      +  +    L+  G + L
Sbjct: 426 GDAQATAEVFGRMLPMLEARGMTTL 450


>gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus pyogenes M49 591]
 gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131]
 gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1465

 Score = 39.2 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD---GTVD------IIRIAAGQKN 62
           P +        +  D ET GL    +   ++Q++      G +       I         
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 63  APNLVGM----LVDEK----REK-----------IFHYGRFDIAVL-----FYTFGVRVR 98
              L G+    L D K      K           + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQDAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|328866460|gb|EGG14844.1| hypothetical protein DFA_10717 [Dictyostelium fasciculatum]
          Length = 1213

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF-YTFGVRVRPVFCTKIASRLTRTYTN 115
               KN   L+ +L +E  +K+    +    + F Y      + ++  KI + + +  + 
Sbjct: 657 PIAIKNTELLIRILENEAIKKVSFNCQESFKIFFAYNTYFSPKNIWDPKILAWMYKPESK 716

Query: 116 QHGLKDNLKELLGINISKAQ 135
           +  +   + E    +  K +
Sbjct: 717 RVDMSTLVVEYQIDSHDKLE 736


>gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1463

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 223

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 39/143 (27%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGR-FDIAVLFYTFGVRV--RPVFCTKIASRLTR 111
            +   +    +L   L D +   ++H G  FD  +L +   + +    V  T + + L  
Sbjct: 51  DVTQDKTMPKDLKAYLDDPEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQA-LAH 109

Query: 112 TYTNQHGLKDNLKELLGINISKA----------------------QQSSDWSADDLS--D 147
                 G   +L ++  +N  K                       Q+++      L+  +
Sbjct: 110 GLPGALG---SLCDIFNVNSDKTKDKEGKALIQLFCKPRPKNSKIQRAT-----ALTHFE 161

Query: 148 EQLQ---YAASDVVHLHALRLQF 167
           E L+   YA SD++ +  +    
Sbjct: 162 EWLRFKTYAGSDILAMREIYQHL 184


>gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234]
 gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234]
          Length = 232

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 52/176 (29%), Gaps = 50/176 (28%)

Query: 26  DTETLGLMPRRDRL----CI-------------VQLSPGDGTVDIIRIA------AGQKN 62
           DTET GL  R DR+     +             + ++PGD  V    +A         K+
Sbjct: 7   DTETTGLDSREDRVIEIGGVELENQFPTGRTIHIYINPGDRKVHPDALAVHGITDDFLKD 66

Query: 63  APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRLTR 111
            P+   ++ +          + H   FDI  +   F       V +  V  T   +R   
Sbjct: 67  KPSFADVVEEIVDFFGDARWVAHNATFDIGFINAEFDRLGLPPVVIDRVTDTLALARRKH 126

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                  L    +      I  + ++               A  D   L  + ++ 
Sbjct: 127 PMGPN-SLDALCRRY---GIDNSHRA------------KHGALLDSELLAEVYIEM 166


>gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 461

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 33/152 (21%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQ-----------LSPGDGTVDI 53
           +  + DI  E A R +  +  D+ET GL P++D   +VQ           ++       +
Sbjct: 257 QTPDTDI-NETALRDLTFVVFDSETTGLDPQKDD--VVQLGAVRIVNGRIIASETFEALV 313

Query: 54  -----------------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVLFYTFG 94
                              + AG  +   +             + H   FD+A L  +  
Sbjct: 314 NPGRPIPAQSTKVHGISDDMVAGAPDFTVVRDNFQRYAANAVLVAHNAPFDMAFLNRSDA 373

Query: 95  VRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +   PV  T   S +    + +H L      L
Sbjct: 374 IFQNPVMDTVHLSAIVFGGSAEHTLDALCARL 405


>gi|124809664|ref|XP_001348647.1| Rrp6 homologue, putative [Plasmodium falciparum 3D7]
 gi|23497545|gb|AAN37086.1| Rrp6 homologue, putative [Plasmodium falciparum 3D7]
          Length = 1136

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 10/137 (7%)

Query: 33  MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT 92
              R    I+ +   +    II +    ++   +  +  D    KI +     I  L   
Sbjct: 574 RTYRGFTSIIMIGTNNMN-YIIDVFNMFEDLYIINDITTDPNILKITYNAPNIINQLQKD 632

Query: 93  FGVRVRPVFCTKIASRLTRTYTN-QHGLKDNLKELLGINI---SKAQQSSDWSADDLSDE 148
           F +    +F   IA  +   Y N ++ L   + +     +   +K  Q+       +  +
Sbjct: 633 FSIYFVNIFD--IA--ICSNYLNFKNNLNYLIYKYFNTVLYYKNKILQNV-LITRPIEPD 687

Query: 149 QLQYAASDVVHLHALRL 165
            +    ++   L+ L  
Sbjct: 688 MVDVIQNEFTFLYDLFD 704


>gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 1465

 Score = 39.2 bits (91), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
 gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
          Length = 256

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 56/201 (27%), Gaps = 61/201 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFTEKLQRLGRSDLATSC 183
           + L  T      G+++L    
Sbjct: 172 VYLMMTG-----GQTNLFDEE 187


>gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
          Length = 1463

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSVFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 650

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 48  DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF--GVRVRPVFCTKI 105
           D  V++I  A G++    +   L++    K      F+I  L      G+      CT +
Sbjct: 41  DEPVEVIDFAQGEELPQKVKTALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMV 100

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKA 134
            S +     +     D + ++L     K 
Sbjct: 101 QSLILGLPGS----LDMVGKVLRFEEDKQ 125


>gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 707

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 35/123 (28%), Gaps = 23/123 (18%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRT 112
                  P       D     + H   FD+  L     + GVR  +PV  T + S +   
Sbjct: 583 PPLDTVLPAFRAYCADT--VLVAHNAAFDMRFLQLKEASTGVRFDQPVLDTLLLSAVLHP 640

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               H L+   +  LG+ I                     A  D +    + L+    L 
Sbjct: 641 NQESHRLEAIAER-LGVTIIGRHT----------------AMGDAIVTGEVFLKMIPLLA 683

Query: 173 RLG 175
             G
Sbjct: 684 EKG 686


>gi|581071|emb|CAA50322.1| rnd [Escherichia coli]
          Length = 38

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 6  VHEGDIPAECAA-RYVDAIAVDTETLGLMPRR 36
            +  + + C A R   AIA+DTE +      
Sbjct: 7  TTDDALASLCEAVRAFPAIALDTEFVRTRTYY 38


>gi|21234370|ref|NP_640280.1| DNA polymerase [Vibrio phage VpV262]
 gi|21064883|gb|AAM28367.1| DNA polymerase [Vibrio phage VpV262]
          Length = 661

 Score = 39.2 bits (91), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 42/137 (30%)

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--CTKIASRLTRTYTN- 115
           G  +   L+  + +     + H  +FDI  L    G+    +    T +A  +       
Sbjct: 74  GIHDMDELIQDMYEADFV-VAHNAKFDIKWLIRA-GLDPSRILVADTMLAEYVLTGNLKA 131

Query: 116 ----QHGLKDNLKELLGIN----ISKAQQ-----------------SSD-------WSAD 143
                  L    K+ LG+     + K  +                  SD       W   
Sbjct: 132 GKKGALTLGALAKQYLGVTKDPLVDKLMRGGVSPRVIPKSLLERRNKSDIFQTRNLWLK- 190

Query: 144 DLSDEQLQYAASDVVHL 160
            L DE ++    DV+HL
Sbjct: 191 -LRDEMME---RDVIHL 203


>gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA04375]
          Length = 1463

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAGQK------ 61
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGYPLSAFT 473

Query: 62  ------------NAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                       NA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein
 gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003]
 gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 19/109 (17%)

Query: 73  EKREKIFHYGRFDIAVLFY---TFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E    + H   FD+  L       G     PV  T + S +       H L       LG
Sbjct: 590 EGAVLVAHNAPFDLEFLRRKELLIGKNFDNPVLDTVLLSAVVFGAAEGHSLDALTHR-LG 648

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           I I +  + +              A  D V      L+    L+  G +
Sbjct: 649 ITIPEEARHT--------------ALGDTVATAEAFLRLLPALKARGLT 683


>gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141]
          Length = 1463

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 921

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  LS +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFDARLAA 510


>gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 19/109 (17%)

Query: 73  EKREKIFHYGRFDIAVLFY---TFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           E    + H   FD+  L       G     PV  T + S +       H L       LG
Sbjct: 590 EGAVLVAHNAPFDLEFLRRKELLIGKNFDNPVLDTVLLSAVVFGAAEGHSLDALTHR-LG 648

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
           I I +  + +              A  D V      L+    L+  G +
Sbjct: 649 ITIPEEARHT--------------ALGDTVATAEAFLRLLPALKARGLT 683


>gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394]
 gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1465

 Score = 39.2 bits (91), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  L+ +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFEARLAA 510


>gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
 gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
          Length = 1463

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
 gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
          Length = 1463

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 918

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 21/132 (15%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY 113
             A  + +     G L D +R KI H  +  + V     G+ V  V   T + + L +  
Sbjct: 389 PSALDEADERAFAGWLGDPERPKIMHDAKGLMRVFGEH-GMSVAGVSMDTALGAYLVKPG 447

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----------VVHLHAL 163
                L     E LG  +  AQ+         SD QL + A D             +  L
Sbjct: 448 RRTFALGALSLEYLGRELVPAQE---------SDGQLAFGADDESQARTLMVEARTILDL 498

Query: 164 RLQFTEKLQRLG 175
               T +L  +G
Sbjct: 499 GTALTARLPEVG 510


>gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270]
 gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1465

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD---GTVD------IIRIAAGQKN 62
           P +        +  D ET GL    +   ++Q++      G +       I         
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 63  APNLVGM----LVDEK----REK-----------IFHYGRFDIAVL-----FYTFGVRVR 98
              L G+    L D K      K           + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQDAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
 gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
          Length = 1421

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTFGVRVRP-VFCTK 104
           T+D+++ A   + A   +   + +    + H   FD++           V V   V  T 
Sbjct: 464 TLDMVKDAPDARQALAALREFIGDAVL-VAHNAAFDLSFLKVGFRKYLQVEVTNQVVDTL 522

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
             +R+   +   H L   +KE   I ++   ++ D
Sbjct: 523 GTARVLLPHLKNHKLDTLVKEF-KIELANHHRAVD 556


>gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585]
 gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 70585]
          Length = 1463

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEAIYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005]
 gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1465

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180]
 gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1465

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD---GTVD------IIRIAAGQKN 62
           P +        +  D ET GL    +   ++Q++      G +       I         
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 63  APNLVGM----LVDEK----REK-----------IFHYGRFDIAVL-----FYTFGVRVR 98
              L G+    L D K      K           + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQDAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS]
 gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS]
          Length = 1465

 Score = 39.2 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
 gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
          Length = 1463

 Score = 38.8 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
           86-1044]
 gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
           86-1044]
          Length = 231

 Score = 38.8 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 55/179 (30%), Gaps = 47/179 (26%)

Query: 26  DTETLGLMPRRDRLCIVQLSPG------DGTVDI-IRIAAG-----------QKNAPNLV 67
           DTET G+    DR+  +           +  V+  I I               K+AP   
Sbjct: 9   DTETTGIKAEHDRIVEIAAYDPISGCSLEELVNPGIPIPKEASKVHHITDDMVKDAPTFK 68

Query: 68  GM------LVDEKREKIFHYGR-FDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTN 115
            +              I H    FD+  L + F            F T   +R  R    
Sbjct: 69  EVGQKFIEFCSGDVILIAHNNDNFDVHFLRHEFKRHALEMPEWRFFDTLKWARRYRPDLP 128

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           +H L+   +E+  I  + A +                A  DV+ LH +  + ++ L   
Sbjct: 129 RHALQFL-REIYSIEANNAHR----------------ALDDVIVLHKVFEKMSDDLDIE 170


>gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  L+ +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFEARLAA 510


>gi|121605515|ref|YP_982844.1| 3'-5' exonuclease [Polaromonas naphthalenivorans CJ2]
 gi|120594484|gb|ABM37923.1| 3'-5' exonuclease [Polaromonas naphthalenivorans CJ2]
          Length = 198

 Score = 38.8 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 26/182 (14%)

Query: 4   IRVHEGDIPAE--CAARYVD------AIAVDTET--------LGLMPRRDRLCIVQLSPG 47
           + +H+  + A    AAR ++      A+  DTE+            P      IVQLS  
Sbjct: 22  LNLHQIQLIANPQQAARALEELDGVTALGFDTESKPTFAKNEASTGPH-----IVQLSTL 76

Query: 48  DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
           +    I ++   +     +  +L   +  K       D   + +  GV  + V       
Sbjct: 77  E-QAYIFQLEDAEC-RRAVAVLLETHRVIKAGFGLGDDRRRIIHKLGVDPQGVLDLNTVF 134

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           R  R Y    G++  +  +      K+    +S+W+   L + QL YAA+D      +  
Sbjct: 135 R-ERGYRKDMGVRGAVAVMFNRRFIKSRKATTSNWANVHLQESQLIYAANDAYAALRVYQ 193

Query: 166 QF 167
             
Sbjct: 194 AL 195


>gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           mucosa ATCC 25996]
 gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
           mucosa ATCC 25996]
          Length = 479

 Score = 38.8 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 63/205 (30%), Gaps = 56/205 (27%)

Query: 21  DAIAVDTETLGLMPRRDRL-------------C----IV-----------QLSPGDGTVD 52
             + VD ET G    +DR+             C    +V           QL  G     
Sbjct: 32  PVVVVDLETTGGNLYQDRVTEVALLRFDGQSVCRYEWLVNPCKPIPEFVAQL-TGISNKM 90

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GV-RVRPVFCTKIASR 108
           +      ++ A  L+ +L  +    + H  RFD   L + F   G+    P  CT   SR
Sbjct: 91  VKTAPLFEEIASQLLPLL--QGAVVVAHNSRFDYTFLRHEFRRAGIDFAAPALCTVQLSR 148

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                  +H L   ++    I +    +                A +DV    AL     
Sbjct: 149 RLYPEFYKHNLDSIIERNA-IAVENRHR----------------AMTDV---LALSDYLE 188

Query: 169 EKLQRLGRSDLATSCCNFLMDRAEL 193
             L+     D   + C  LM+   L
Sbjct: 189 HSLREKNTEDW-DNYCRSLMNPKML 212


>gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315]
 gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1]
 gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           MGAS315]
 gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
           SSI-1]
          Length = 1465

 Score = 38.8 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  L+ +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFEARLAA 510


>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
 gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
          Length = 871

 Score = 38.8 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 27/141 (19%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121
              L   L +E+  K+ H G+F I V+   +G++   V   T + S +     +   L +
Sbjct: 361 LEKLRAFLENEEIGKLVHNGKF-IEVVLKRYGLKFDGVRGDTLLLSYVLDPGFSGETLSE 419

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASD----VVHLHALRLQFTEKLQRLGRS 177
           +L   LG  + +                      D    V  L  L     EKL      
Sbjct: 420 HLFHYLGEVVDEK--------------------MDPGLAVRGLKKLHQVLEEKLGSQDLV 459

Query: 178 DLAT-SCCNFLMDRAELDLLG 197
           +L            A+++  G
Sbjct: 460 NLYKVVELPLSPVLADMEFTG 480


>gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish
           7]
 gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon
 gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7]
          Length = 230

 Score = 38.8 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 27/114 (23%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113
           A + +  + D K   I H   FDI  L +   +          +     T + +R +   
Sbjct: 77  ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMAR-SIFP 133

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +++ L    K              D S       QL  A  D   L  + ++ 
Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVEL 172


>gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 832

 Score = 38.8 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 294 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 353

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  LS +Q+       YAA +      L  
Sbjct: 354 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 413

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 414 VFDARLAA 421


>gi|291280806|ref|YP_003497640.1| hypothetical protein DEFDS_P264 [Deferribacter desulfuricans SSM1]
 gi|290755508|dbj|BAI81884.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1576

 Score = 38.8 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT 103
           L  E   KIFH G FD++ +     +    +     F T
Sbjct: 554 LNSENIIKIFHNGTFDVSYIMNKLNISPNEIKVTRYFDT 592


>gi|17568711|ref|NP_510676.1| hypothetical protein K05G3.1 [Caenorhabditis elegans]
 gi|1109861|gb|AAB52496.1| Hypothetical protein K05G3.1 [Caenorhabditis elegans]
          Length = 203

 Score = 38.8 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
             NQ  L+  L +   I I+K +  SDW+   L   Q +YA  DV+ L  L
Sbjct: 152 QVNQKSLEALLLKK-EIVITKWETFSDWTRPVLRPSQERYAVYDVIRLFDL 201


>gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  L+ +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFEARLAA 510


>gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5]
 gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
 gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5]
 gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
          Length = 229

 Score = 38.8 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 27/114 (23%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113
           A + +  + D K   I H   FDI  L +   +          +     T + +R +   
Sbjct: 77  ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMAR-SIFP 133

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +++ L    K              D S       QL  A  D   L  + ++ 
Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVEL 172


>gi|189209768|ref|XP_001941216.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977309|gb|EDU43935.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 340

 Score = 38.8 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 31/114 (27%)

Query: 8   EGDIPAE-CAARYVDAIAVDT---------ETLGLMPRRDRLCIVQLSPGDGTVDI-IRI 56
           + ++ A     R +  +A D          E L     + ++ ++Q++  D      + I
Sbjct: 78  DSELAARHFLTRLLPIVAFDMQWAEDDCSKEAL-----QKKVGLIQIATEDKVALFHLGI 132

Query: 57  AAGQKN----APNLVGMLVDEKREKI------FHYGRFDIAVLFYTFGVRVRPV 100
             G+ +    AP+L  ++ D K  K+       H  R     L   FG+  + +
Sbjct: 133 HPGKTSQDIIAPSLKRLIEDPKIAKVGIDIWNGHSSR-----LNRWFGLNPKGI 181


>gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750]
 gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1465

 Score = 38.8 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
 gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
          Length = 1465

 Score = 38.8 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|297597578|ref|NP_001044182.2| Os01g0737700 [Oryza sativa Japonica Group]
 gi|255673666|dbj|BAF06096.2| Os01g0737700 [Oryza sativa Japonica Group]
          Length = 233

 Score = 38.8 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGV 95
           + ++Q+  G     + +I         L   L D +   +    H    D+  L   + +
Sbjct: 97  VAVLQICVG-RRCLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHD---DVDKLREHYDL 152

Query: 96  RVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
            V        +A++          GL+  + E++ + + K    + S W +  L+ +Q+ 
Sbjct: 153 EVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVM 212

Query: 152 YAASD 156
           YA +D
Sbjct: 213 YACAD 217


>gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria
           pomeroyi DSS-3]
 gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria
           pomeroyi DSS-3]
          Length = 470

 Score = 38.8 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 45/141 (31%), Gaps = 39/141 (27%)

Query: 26  DTETLGLMPRRDRLCIVQLS----------PGDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
           DTET GL+P +D +  VQ+           PG+    ++        A   V  + D   
Sbjct: 282 DTETTGLLPHKDEI--VQIGAVRVVKGRIVPGERIDQLVDPGRPIPPASTRVHGVSDAMV 339

Query: 73  ---EKRE--------------KIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLT 110
                                 + H   FDIA L    G R       P+  T + S + 
Sbjct: 340 AGAPDIVAAARQFHQFARDAVIVAHNAPFDIAFLRRH-GPRCGLDWDHPILDTVLLSAVL 398

Query: 111 RTYTNQHGLKDNLKELLGINI 131
              +  H L       LG+ I
Sbjct: 399 FGASETHTLDALCDR-LGVTI 418


>gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           Iowa]
 gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa]
          Length = 229

 Score = 38.8 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 27/114 (23%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113
           A + +  + D K   I H   FDI  L +   +          +     T + +R +   
Sbjct: 77  ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDTLVMAR-SIFP 133

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +++ L    K              D S       QL  A  D   L  + ++ 
Sbjct: 134 GSKYNLDALCKRF----------KVDNSGR-----QLHGALKDAALLAEVYVEL 172


>gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
 gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
          Length = 905

 Score = 38.8 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 22/162 (13%)

Query: 44  LSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102
            +  DGT   +        +   L   L D  R+KI H  +     L             
Sbjct: 363 FATADGTAAYVDATQLDPADETALAAWLADPARQKILHDAKGPSLALAARGFTLAGVAAD 422

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINI-----SKAQQ--SSDWSADDLSDEQLQYAAS 155
           T + + L ++      L+   +E+LG  +      + Q    +D  A+  ++ Q+  AA 
Sbjct: 423 TALEAYLAQSGRRSFDLEPLAEEVLGRRLSPAGADENQGTLFADEDAE--AERQMA-AAH 479

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLG 197
            V     L      KL   G    A      L+   EL L+G
Sbjct: 480 AV---LDLADALRGKLAETG----AEQ----LLTDIELPLVG 510


>gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
 gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
          Length = 1463

 Score = 38.8 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 780

 Score = 38.8 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  LS +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFDARLAA 510


>gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 504

 Score = 38.8 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 16/97 (16%)

Query: 88  VLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS-------KAQQS 137
           VL     V   P+F T IA  + +    +HG+    +  L    I+I        K Q+ 
Sbjct: 3   VLQNYGAVVKGPLFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHIDELIGPKGKNQK- 60

Query: 138 SDWSADDLSDEQLQ-YAASDVVHLHALRLQFTEKLQR 173
              +  DL  + +  YA  D      L+    ++L+ 
Sbjct: 61  ---NMRDLDPKDVYLYACEDADITLKLKNVLEKELKE 94


>gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 1462

 Score = 38.8 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 39/147 (26%), Gaps = 37/147 (25%)

Query: 14  ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67
           + A      +  D ET GL     D   ++Q++      G+   +               
Sbjct: 416 DMALSDATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472

Query: 68  GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99
             L              E+  K           + H   FD+  +      +      +P
Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           V  T   +R       +HGL    K  
Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
 gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
          Length = 1445

 Score = 38.8 bits (90), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 54  IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGVRVR--PVFCTKIA 106
             +  G K+   ++ +     E    + H   FD+  L   +  +G+     PV  T   
Sbjct: 481 DEMVRGSKSEEEVLRLFREFSEGAVLVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 540

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +R       + GL    K+  G+++ +  ++
Sbjct: 541 ARYLYPEFKRFGLGVLSKKF-GVSLEQHHRA 570


>gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49]
          Length = 1462

 Score = 38.8 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 39/147 (26%), Gaps = 37/147 (25%)

Query: 14  ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67
           + A      +  D ET GL     D   ++Q++      G+   +               
Sbjct: 416 DMALSDATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472

Query: 68  GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99
             L              E+  K           + H   FD+  +      +      +P
Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           V  T   +R       +HGL    K  
Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 1463

 Score = 38.8 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
 gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
          Length = 1462

 Score = 38.8 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 39/147 (26%), Gaps = 37/147 (25%)

Query: 14  ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67
           + A      +  D ET GL     D   ++Q++      G+   +               
Sbjct: 416 DMALSDATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472

Query: 68  GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99
             L              E+  K           + H   FD+  +      +      +P
Sbjct: 473 TDLTGITDEHVRNAKSLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           V  T   +R       +HGL    K  
Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo]
 gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo]
          Length = 1465

 Score = 38.8 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish]
 gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish]
          Length = 605

 Score = 38.8 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 12  PAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVG 68
            AE  AR     IA D ET GL    +  C V  +    DG++  + +            
Sbjct: 25  AAERLARTAGFTIATDIETPGLDRAFEINC-VTFAWRWDDGSIHSVLLDPVGNTLHRQAC 83

Query: 69  M-LVDEKREKIFHYGRFDIAVLFYT--FGVRV----RPVFCTKIASRL-TRTYTNQHGLK 120
           + L +     I H   FDI  L +   FG         V  T + +R      T    L 
Sbjct: 84  IDLYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFALPDVTVSKSLT 143

Query: 121 DNLKELLGIN 130
                 LG++
Sbjct: 144 ALSIRYLGLS 153


>gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429]
 gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096]
 gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1465

 Score = 38.8 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
 gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
          Length = 1463

 Score = 38.8 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans]
          Length = 903

 Score = 38.8 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 44  LSPGDG-TVDIIRIAAG-QKNAPNLVGMLVDEKREKIFHYG-RFDIAVLFYTFGVRVRPV 100
           ++  DG T   I      Q +   L   L D +R K  H   R ++A+ ++    R    
Sbjct: 360 VAWWDGHTAYFIPFERLVQSDMRPLADWLADARRPKRTHDSHRAEVALFWHGLAFRGTS- 418

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKEL 126
           FCT IA+ L     ++H L D  +  
Sbjct: 419 FCTHIAAYLLDPTESRHTLADLSRRY 444


>gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
 gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
          Length = 1463

 Score = 38.8 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
 gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
          Length = 1463

 Score = 38.8 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
          Length = 916

 Score = 38.8 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 14/127 (11%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTN 115
                    L  +L DE   K+    ++D  VL     + +  +   T + S +  +   
Sbjct: 384 LDFDDALLTLKPILQDESINKVGQNLKYDAHVLANY-QIDLNGISDDTMVKSYVLNSVAT 442

Query: 116 QHGLKDNLKELLGINISKAQQSSDW---SADDLSDEQLQ------YAASDVVHLHALRLQ 166
           +H + D     L          SD        ++  Q+       YA  DV+  H L   
Sbjct: 443 RHNMDDLSMHYLNHQ---TIHFSDVAGKGKKQITFNQVGLEAAFPYACEDVIVTHELNKV 499

Query: 167 FTEKLQR 173
             E + +
Sbjct: 500 LDEDIVQ 506


>gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus]
 gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus]
          Length = 605

 Score = 38.8 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 12  PAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVG 68
            AE  AR     IA D ET GL    +  C V  +    DG++  + +            
Sbjct: 25  AAERLARTAGFTIATDIETPGLDRAFEINC-VTFAWRWDDGSIHSVLLDPVGNTLHRQAC 83

Query: 69  M-LVDEKREKIFHYGRFDIAVLFYT--FGVRV----RPVFCTKIASRL-TRTYTNQHGLK 120
           + L +     I H   FDI  L +   FG         V  T + +R      T    L 
Sbjct: 84  IDLYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143

Query: 121 DNLKELLGIN 130
                 LG++
Sbjct: 144 ALSIRYLGLS 153


>gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  L+ +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFEARLAA 510


>gi|262370710|ref|ZP_06064035.1| 3'-5' exonuclease [Acinetobacter johnsonii SH046]
 gi|262314510|gb|EEY95552.1| 3'-5' exonuclease [Acinetobacter johnsonii SH046]
          Length = 221

 Score = 38.8 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV 100
           ++QL+  +    + ++     N   L   L +  + K+    + D A LF   G  ++ V
Sbjct: 72  LIQLASVEH-AYLFQMNPPIWN--FLTPFLANPDQLKVGFGLKND-AHLFRKKGFELKGV 127

Query: 101 FCTKIASRLTR-TYTNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQ 149
              +++        TN  G+K+ +  L  +N  K++   +S+W+   L+ EQ
Sbjct: 128 --VELSKCFASFGLTNPVGIKNAIALLFQLNFPKSKKVSTSNWARKILTPEQ 177


>gi|125527633|gb|EAY75747.1| hypothetical protein OsI_03660 [Oryza sativa Indica Group]
          Length = 208

 Score = 38.8 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 39  LCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI---FHYGRFDIAVLFYTFGV 95
           + ++Q+  G     + +I         L   L D +   +    H    D+  L   + +
Sbjct: 72  VAVLQICVG-RRCLVFQIIHADYVPDQLGDFLGDGRFTFVGVGIHD---DVDKLREHYDL 127

Query: 96  RVRPVFCT-KIASRLTRTY-TNQHGLKDNLKELLGINISKAQ--QSSDWSADDLSDEQLQ 151
            V        +A++          GL+  + E++ + + K    + S W +  L+ +Q+ 
Sbjct: 128 EVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVM 187

Query: 152 YAASD 156
           YA +D
Sbjct: 188 YACAD 192


>gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  L+ +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFEARLAA 510


>gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
 gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
          Length = 1463

 Score = 38.8 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITYDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  L+ +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFEARLAA 510


>gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
 gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
          Length = 1463

 Score = 38.8 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
 gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
          Length = 982

 Score = 38.8 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYT 114
           R+  G ++A  L  +L       + H  +  + +         +P+F TK+A  L +   
Sbjct: 441 RLDPGMRDA--LNVILAQYAPTLVVHGYKEQLHLFASLGVDLPKPLFDTKLAGYLVQPDF 498

Query: 115 NQHGLKDNLKELLGINI-SKAQQSS 138
           +   L+      L I++  K ++++
Sbjct: 499 HADTLEQAAARFLDIHVEEKTEEAT 523


>gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
 gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13]
 gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40]
 gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117
           L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  +   +H
Sbjct: 389 LKPLLEDPNKIKVGQHAKFAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRH 448

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171
                + + L       Q  +   A  L+ +Q+       YAA +      L   F  +L
Sbjct: 449 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 508

Query: 172 QR 173
             
Sbjct: 509 AA 510


>gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 723

 Score = 38.8 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 21/119 (17%)

Query: 25  VDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIA---------AGQKNAPNLVGML-- 70
           +D ET GL    D L   C+      D     +             GQ        ++  
Sbjct: 88  LDVETTGLDIYNDILVGICL---YNPDLPSAYVPFNHTDLQNRRVEGQMTEEECKAVMLP 144

Query: 71  --VDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
              ++  + I H  +FD  ++ + +G R+  V + T IAS +      +HGLK    + 
Sbjct: 145 YLANKDLKCINHNIKFDDKMITFNWGQRIANVWWDTNIASWVLN-ENEKHGLKPLYNKY 202


>gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 885

 Score = 38.8 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
           + +   +    II+I   +        +  DE  EK+ H  + D+  L   F + ++   
Sbjct: 341 IAIKVQNEATCIIKIDCKEDIL-KFKDVFEDENIEKLGHNLKEDMITLLN-FDINIKNYT 398

Query: 102 -CTKIASRLT 110
             ++IA  + 
Sbjct: 399 HDSEIAEYIL 408


>gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278]
 gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278]
          Length = 1034

 Score = 38.8 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 22/143 (15%)

Query: 10  DIPAECA-ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK------- 61
           ++ A  A A     + VD +   + P +  LC + L+   G    I +A  Q        
Sbjct: 431 ELKAFLARAHEFGRVTVDVKASSIDPMQANLCGLSLALAPGEACYIPLAHRQAGDGGGLF 490

Query: 62  ---NAPN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
               AP+          L  +L      KI +  +F +AVL    G+ ++ V    + S 
Sbjct: 491 DAGLAPDQIKESEALAALKPVLESTGLLKIGYNIKF-LAVLLAQHGITLQNVDDILLMSY 549

Query: 109 LTRTYTNQHGLKDNLKELLGINI 131
                   H L    + +L   I
Sbjct: 550 ALDAGRGSHKLDSLAEHVLAHAI 572


>gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117
           L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  +   +H
Sbjct: 389 LKPLLEDPNKIKVGQHAKFAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRH 448

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171
                + + L       Q  +   A  L+ +Q+       YAA +      L   F  +L
Sbjct: 449 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 508

Query: 172 QR 173
             
Sbjct: 509 AA 510


>gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
 gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
          Length = 1468

 Score = 38.8 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 60  QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRL 109
            K+A  L+ +L +     +    + H   FD+  +      +   +  +PV  T   +R 
Sbjct: 489 LKDAKPLLQVLEEFQEFCQDTVLVAHNATFDVGFMNANYERHDLPLISQPVIDTLEFARN 548

Query: 110 TRTYTNQHGLKDNLKELLGINIS 132
                 +HGL    K    + + 
Sbjct: 549 LYPEYKRHGLGPLTKRF-QVALD 570


>gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer]
 gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer]
          Length = 605

 Score = 38.8 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 12  PAECAARYVDA-IAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLVG 68
            AE  AR     IA D ET GL    +  C V  +    DG++  + +            
Sbjct: 25  AAERLARTAGFTIATDIETPGLDRAFEINC-VTFAWRWDDGSIHSVLLDPVGNTLHRQAC 83

Query: 69  M-LVDEKREKIFHYGRFDIAVLFYT--FGVRV----RPVFCTKIASRL-TRTYTNQHGLK 120
           + L +     I H   FDI  L +   FG         V  T + +R      T    L 
Sbjct: 84  IDLYERAETIILHNAPFDIPALRHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143

Query: 121 DNLKELLGIN 130
                 LG++
Sbjct: 144 ALSIRYLGLS 153


>gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 1402

 Score = 38.8 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 64/208 (30%), Gaps = 57/208 (27%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLS-----------------PGDGTVDIIRIAAGQ---- 60
            + VD ET G   ++DR+  +++                    +G +  IRI+       
Sbjct: 390 FVVVDIETTGFDNQKDRI--IEIGAVKIENGEIVDRFSTFVDPEGKI-PIRISELTGIYQ 446

Query: 61  ---KNAPNL------VGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIAS 107
               NAP L                 + H  +FDI  L   +   G+        T   S
Sbjct: 447 NMVDNAPKLSDAILEFEKFCSGAIL-VAHNAQFDIGFLKRSYQECGLIFDYTYIDTLELS 505

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           R   T  + H L   + E L I + K    +D               SD      + +  
Sbjct: 506 RRVLTDLSSHKLNK-VAEFLNIEL-KHHHRAD---------------SDAETTAKIFISL 548

Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195
            EKL+  G         N +    + DL
Sbjct: 549 IEKLKSRGYK--YLKELNTIETNTKADL 574


>gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1]
          Length = 924

 Score = 38.8 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 28/113 (24%)

Query: 21  DAIAVDTETLGLMPR------------------RDRLCIVQLSPGDGTVDIIRIAAGQKN 62
             + +D ET+   P                   + ++  + LS   G    I +   +  
Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266

Query: 63  AP---------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKI 105
                       L  +L  E  E I H G+FDI  L  +  + +   ++ T +
Sbjct: 267 MKGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIWDTML 319


>gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 1572

 Score = 38.8 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 60/200 (30%), Gaps = 55/200 (27%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIR--- 55
           E ++  +   +    +  D ET GL   RD++  ++++          G+    I     
Sbjct: 467 EDNLEKDFVLKEATYVVFDLETTGLSNVRDKI--IEIAGIKIKNGNKIGEFQKFIDPQQK 524

Query: 56  IAAGQKNAPNLVGMLV----------------DEKREKIFHYGRFDIAVLFYTFG----- 94
           +     N  N+   ++                 +    + H   FD+  L          
Sbjct: 525 LTKTITNITNITDEMLQGQQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKIS 584

Query: 95  VRVRPVFCTKIASRLTRTYTNQHGLKDN--LKELLGINISKAQQSSDWSADDLSDEQLQY 152
           +  +P+  T   S+  R ++N         L  +  + +    +                
Sbjct: 585 LEPKPIIDTMALSQ--RYFSNLLKYFSLKRLATVFKVKLEDHHR---------------- 626

Query: 153 AASDVVHLHALRLQFTEKLQ 172
           A +D      + ++  ++L 
Sbjct: 627 ALADATATSEIFIKMIDQLA 646


>gi|317051112|ref|YP_004112228.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
 gi|316946196|gb|ADU65672.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
          Length = 169

 Score = 38.8 bits (90), Expect = 0.48,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 51/184 (27%), Gaps = 53/184 (28%)

Query: 22  AIAVDTETLGLMPRR------------------DRLC-IVQL----SPGDGTVDII---- 54
            +A+D ET GL P R                     C ++Q+    S     V  I    
Sbjct: 4   FVAIDVETTGLSPARGARVIEIAAVKMEQGQVIAEFCSLIQVGVPVSAATTGVHGITTAM 63

Query: 55  ---RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAV----LFYTFGVRVRPVFCTKIAS 107
              + A G+   P  +  +       + H   FD+      L         P  CT    
Sbjct: 64  LAGQPAPGEI-WPQFIWFIEHHPI--VAHNAPFDMRFVHSELQRLGLSMANPSHCTLRLG 120

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDE-QLQYAASDVVHLHALRLQ 166
           R        H L+   + +LG                L  E QL  A  D      +  +
Sbjct: 121 RRKYPRLPNHKLEYLAQHVLGK---------------LPPEIQLHRALGDARLTAMVWEE 165

Query: 167 FTEK 170
              +
Sbjct: 166 MRRE 169


>gi|331013568|gb|EGH93624.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 443

 Score = 38.8 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 117 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 176

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  L+ +Q+       YAA +      L  
Sbjct: 177 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 236

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 237 VFEARLAA 244


>gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117
           L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  +   +H
Sbjct: 389 LKPLLEDPNKIKVGQHAKFAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRH 448

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171
                + + L       Q  +   A  L+ +Q+       YAA +      L   F  +L
Sbjct: 449 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 508

Query: 172 QR 173
             
Sbjct: 509 AA 510


>gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 925

 Score = 38.8 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117
           L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  +   +H
Sbjct: 393 LKPLLEDPNKIKVGQHAKFAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRH 452

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171
                + + L       Q  +   A  L+ +Q+       YAA +      L   F  +L
Sbjct: 453 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 512

Query: 172 QR 173
             
Sbjct: 513 AA 514


>gi|148724470|ref|YP_001285436.1| DNA polymerase [Cyanophage Syn5]
 gi|145588115|gb|ABP87934.1| DNA polymerase [Synechococcus phage Syn5]
          Length = 583

 Score = 38.8 bits (90), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 40/147 (27%)

Query: 83  RFDIAVLFYTFGVRVRP--VFCTKIASRL-----------------TRTYTNQHGLKDNL 123
            +DI  +   +        ++ T I SRL                       +H L+   
Sbjct: 60  GYDIEAIKELYPKWTTKAKLYDTLILSRLFFTDLLDRDFRSKPANMPGNLYGRHSLEAWG 119

Query: 124 KEL------LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRS 177
             L       G  +       DWS    S E L+Y A DV     +   F  KL++    
Sbjct: 120 HRLGVHKSEFGKQLDG-----DWST--YSPEMLEYCAQDVTVSVQVAQMFEPKLEQ---- 168

Query: 178 DLATSCCNFLMDRAELDLLGWENVDIF 204
                C +     A   ++ W+  + F
Sbjct: 169 --YADCIDTEHRLAT--IMAWQEREGF 191


>gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111
                 L  +L D ++ K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPEKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  LS +Q+       YAA +      L  
Sbjct: 443 STAPRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFDARLAA 510


>gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031]
 gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae P1031]
          Length = 1463

 Score = 38.8 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 44/159 (27%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAGQK 61
           E D+           +  D ET GL     D   ++Q++      G+   +         
Sbjct: 417 ERDLSE------ATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGY 467

Query: 62  ------------------NAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTF 93
                             NA  L  +L +     +    + H   FD+  +      +  
Sbjct: 468 PLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGL 527

Query: 94  GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               +PV  T   +R       +HGL    K   G+ + 
Sbjct: 528 PKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase
          Length = 924

 Score = 38.8 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 28/113 (24%)

Query: 21  DAIAVDTETLGLMPR------------------RDRLCIVQLSPGDGTVDIIRIAAGQKN 62
             + +D ET+   P                   + ++  + LS   G    I +   +  
Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266

Query: 63  AP---------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-PVFCTKI 105
                       L  +L  E  E I H G+FDI  L  +  + +   ++ T +
Sbjct: 267 MKGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIWDTML 319


>gi|307197463|gb|EFN78697.1| Probable exonuclease mut-7-like protein [Harpegnathos saltator]
          Length = 1058

 Score = 38.8 bits (90), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 38/96 (39%), Gaps = 12/96 (12%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTE----TLGLMPRRDRLCIVQLSPGDG--TVDIIRIAA 58
           R+ E  +      + ++ + +D+E     +    ++  L ++QL+  +    +D+I +  
Sbjct: 406 RLFEEFLDNGL--KGINMVGIDSEWKPSFV---TKQSELALIQLATNENVYILDVITLNE 460

Query: 59  GQKNAPNL-VGMLVDEKREKIFHYGRFDIAVLFYTF 93
                  L + +  ++   KI      D+ V+    
Sbjct: 461 LHDLWSELGLTLFGNQDIIKIGFGIAHDMTVIRKNL 496


>gi|156095159|ref|XP_001613615.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148802489|gb|EDL43888.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1943

 Score = 38.8 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 128  GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
               ++K  Q  +W+   LS   ++YA  DV+ L         KL
Sbjct: 1892 DKEVNKECQIMNWNFRPLSSISVEYAILDVLILKNFFNLIQSKL 1935


>gi|330872927|gb|EGH07076.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 601

 Score = 38.8 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  L+ +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFEARLAA 510


>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 919

 Score = 38.8 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101
           + G+G   I   A    +   L   L D    K  H  +    D+A      G  +  V 
Sbjct: 377 ADGEGR-YIDTSALDPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWTLAGVT 431

Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             T +A+ L R       L D     L   +
Sbjct: 432 SDTALAAYLVRPGQRSFSLDDLALRYLRREL 462


>gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a]
 gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  LS +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFDARLAA 510


>gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 921

 Score = 38.8 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117
           L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  +   +H
Sbjct: 389 LKPLLEDPNKIKVGQHAKFAINLLANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRH 448

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171
                + + L       Q  +   A  L+ +Q+       YAA +      L   F  +L
Sbjct: 449 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 508

Query: 172 QR 173
             
Sbjct: 509 AA 510


>gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6]
 gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 1463

 Score = 38.8 bits (90), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 8   EGDIPAECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-- 59
           E D+           +  D ET GL     D   ++Q++      G+   +         
Sbjct: 417 ERDLSE------ATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGH 467

Query: 60  ----------------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTF 93
                            KNA  L  +L +     +    + H   FD+  +      +  
Sbjct: 468 PLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGL 527

Query: 94  GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
               +PV  T   +R       +HGL    K   G+ + 
Sbjct: 528 PKISQPVIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|323454044|gb|EGB09915.1| hypothetical protein AURANDRAFT_71263 [Aureococcus anophagefferens]
          Length = 1717

 Score = 38.4 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 32/162 (19%)

Query: 10   DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP--GDGTVDIIRIAAGQKNAPNLV 67
            D  AE  A   D +A+D E          L ++Q+        V ++    G     ++ 
Sbjct: 1203 DAWAEFWADAPDVVAIDAE---GTHFTPPL-LLQICARGPRRRVLLVAPT-GDALGGDVA 1257

Query: 68   GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTK---IASRLTRTYTNQHGLKDNLK 124
             +L D    K+F              G  +      +   +A+  T     Q GL     
Sbjct: 1258 RLLGDASITKVFFGPPS-----REHLGAAIANAVDAQAFEVAA--TGYVGKQRGLAAVAG 1310

Query: 125  ELLGINI---SKAQQSSD--WSADD----------LSDEQLQ 151
            + L        K  Q S   + +            LS EQ  
Sbjct: 1311 DALRRAPFAKRKDLQRSFGFYRSRPQFGLSHSRHWLSPEQRA 1352


>gi|225440183|ref|XP_002278250.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 213

 Score = 38.4 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 11/142 (7%)

Query: 23  IAVDTETLGLMPRRDRL----CIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
           + +D E         ++      +QL  G  +  I ++        +L   L +     +
Sbjct: 59  VGLDVE--WRPSFNPQIENPVATLQLCVG-RSCLIFQLLHAPAIPASLNAFLRNPGYTFV 115

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCT-KIASR-LTRTYTNQHGLKDNLKELLGINISK--A 134
                 D+  L    G+ V        +A+  L +      GLK    E+LG  + K   
Sbjct: 116 GVGIDDDLEKLVGDHGLGVSNAVDLRGLAAHELNKMELRNAGLKRLGLEVLGKEVQKPRR 175

Query: 135 QQSSDWSADDLSDEQLQYAASD 156
              S W    LS +Q+QYA  D
Sbjct: 176 VTLSRWDNFYLSTDQVQYACVD 197


>gi|90408651|ref|ZP_01216804.1| hypothetical protein PCNPT3_09539 [Psychromonas sp. CNPT3]
 gi|90310258|gb|EAS38390.1| hypothetical protein PCNPT3_09539 [Psychromonas sp. CNPT3]
          Length = 49

 Score = 38.4 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 21 DAIAVDTETLGLMPRRDRLCIVQLS 45
            +++DTE +        L ++Q+S
Sbjct: 22 SPLSLDTEFVRTRTYVANLGLLQIS 46


>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 1434

 Score = 38.4 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 15/100 (15%)

Query: 52  DIIRIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRV 97
            II +     +    AP +  +L D          + H   FD+  +   F     G   
Sbjct: 467 LIIDLTGITDDMVENAPEVDDVLKDFHEWIGDATLVAHNASFDMGFINAGFQKIGYGHAT 526

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
            PV  T    RL       + L    K+   I +    ++
Sbjct: 527 NPVIDTLELGRLLYPTFKNYRLNTLCKKF-NIELVAHHRA 565


>gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 913

 Score = 38.4 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101
           + G+G   I   A    +   L   L D    K  H  +    D+A      G  +  V 
Sbjct: 371 ADGEGR-YIDTSALDPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWTLAGVT 425

Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             T +A+ L R       L D     L   +
Sbjct: 426 SDTALAAYLVRPGQRSFSLDDLALRYLRREL 456


>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
 gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
          Length = 913

 Score = 38.4 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101
           + G+G   I   A    +   L   L D    K  H  +    D+A      G  +  V 
Sbjct: 371 ADGEGR-YIDTSALDPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWTLAGVT 425

Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             T +A+ L R       L D     L   +
Sbjct: 426 SDTALAAYLVRPGQRSFSLDDLALRYLRREL 456


>gi|330720339|gb|EGG98679.1| Ribonuclease D [gamma proteobacterium IMCC2047]
          Length = 219

 Score = 38.4 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 159 HLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAE 192
           +L  L  Q    LQ  GR   A      ++++  
Sbjct: 3   YLIELYEQQVAALQDKGRLSWAQEEMQVMLNKQR 36


>gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera]
          Length = 1118

 Score = 38.4 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 51/179 (28%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL 109
           VD++    G+           D   +K++H   FD  V+     ++V      T   +RL
Sbjct: 403 VDVLD-GGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY-DLKVSGFHADTMHMARL 460

Query: 110 ---TRTYTNQHGLKDNL--------------KELLG----------INISKA-------- 134
              +R     + L+                 +EL+G            + K         
Sbjct: 461 WDSSRRAVGGYSLEALTRDSKVMSGAHMSNGEELIGKVSMKTIFGKKKLKKDGTEGKIIT 520

Query: 135 ------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK-LQRLGRSDLATSCCNF 186
                  Q  D          + Y+A D +    L      K L +    D A   C F
Sbjct: 521 IAPVEVLQRED--RKP----WISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMF 573


>gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1034

 Score = 38.4 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 51/179 (28%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL 109
           VD++    G+           D   +K++H   FD  V+     ++V      T   +RL
Sbjct: 319 VDVLD-GGGRDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY-DLKVSGFHADTMHMARL 376

Query: 110 ---TRTYTNQHGLKDNL--------------KELLG----------INISKA-------- 134
              +R     + L+                 +EL+G            + K         
Sbjct: 377 WDSSRRAVGGYSLEALTRDSKVMSGAHMSNGEELIGKVSMKTIFGKKKLKKDGTEGKIIT 436

Query: 135 ------QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK-LQRLGRSDLATSCCNF 186
                  Q  D          + Y+A D +    L      K L +    D A   C F
Sbjct: 437 IAPVEVLQRED--RKP----WISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMF 489


>gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
 gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
           ISDg]
          Length = 1527

 Score = 38.4 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 21/108 (19%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + H   FDI  +         P+      T   +R+   + N   L   + + L I++  
Sbjct: 579 VAHNASFDIGFITKKAEFLNIPLTVTSVDTVGLARVLLNHLNNFKLDT-VAKALSISLEN 637

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             +                A  D      + L+F E L+  G   LA 
Sbjct: 638 HHR----------------AVDDAGCTAEIYLKFLEMLRERGIETLAQ 669


>gi|29566249|ref|NP_817817.1| gp56 [Mycobacterium phage Rosebush]
 gi|29424974|gb|AAN01898.1| gp56 [Mycobacterium phage Rosebush]
          Length = 609

 Score = 38.4 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCI----VQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEKR 75
            +A D ET GL    +  C+    +     DGT+   ++       +      +     +
Sbjct: 42  PVAADIETPGLDRNFEINCLTAAWI---GWDGTIESVLLDPIRWPAHRAAARDVFARASK 98

Query: 76  EKIFHYGRFDIAVLFYTFGV---RVRPVFCTKIASRLTRTYTNQHG 118
             +FH   FD+  L++   +    +R +  T + +R    Y + +G
Sbjct: 99  L-VFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFA--YPDSYG 141


>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
 gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
          Length = 901

 Score = 38.4 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 20/148 (13%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNL 123
           P L   L D+K   + H  +  + VL         P+  T +A+ +       + L + +
Sbjct: 376 PVLFPFLADKKIALVGHDLKTVLIVLSQKGVKVQNPLLDTMVAAYILNPARRGYELSEIV 435

Query: 124 KELLGINIS------------KAQQSSDWSADDLSDEQL-QYAASDVVHLHALRLQFTEK 170
           ++ L   +             K   +S         E+L  +A   V  +  L     EK
Sbjct: 436 QDYLHRQVEPLRKKLVGGSSPKQSPAS------FPPERLRDFACRRVEAIGELASTLIEK 489

Query: 171 LQRLGRSDLATS-CCNFLMDRAELDLLG 197
           ++  G  +L  S     +   A ++  G
Sbjct: 490 MEETGLRELFDSVEMPLVAVLAAMEEKG 517


>gi|213423791|ref|ZP_03356771.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 304

 Score = 38.4 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +     A DTET  L      L  +  +   G    + +A    +AP+          L
Sbjct: 225 LKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELL 284

Query: 67  VGMLVDEKREKIFHYGRFD 85
             +L DEK  K+    ++D
Sbjct: 285 KPLLEDEKVRKVGQNLKYD 303


>gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c]
 gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c]
          Length = 971

 Score = 38.4 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 42  VQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRV 97
           + L+P  G    I        +   L G L D  + K  H    D+    +     G  +
Sbjct: 422 IALAPPKGKAAWIDPTQLTPADEQALAGWLADPAKPKAAH----DVKGPMLALAELGFTL 477

Query: 98  RPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
             V   T +A+ L         L D +   L   +   +  SD
Sbjct: 478 AGVTSDTALAAYLALPGQRSFDLGDLVLRYLHRELKADEAPSD 520


>gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 921

 Score = 38.4 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKTKVGQHAKFAINLLANCAIGGDQAHGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q  +   A  L+ +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPVNFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFETRLAA 510


>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
 gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
           reducens MI-1]
          Length = 1426

 Score = 38.4 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR-----PVFCTKIASRL 109
               G++    L   +  E    + H   FD++ L       ++     P   T   +R+
Sbjct: 475 DAPDGKEALTALSEFMG-EAVL-VAHNASFDLSFLRVGLRKYLKQEVTNPAIDTLGVARV 532

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139
                  H L   +KE   I ++   ++ D
Sbjct: 533 LFPNLKNHKLNTLVKEF-KIELTNHHRAVD 561


>gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
 gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
          Length = 955

 Score = 38.4 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105
           +  I+ +         L   L  E    I H  +     L +  G        P+F TK+
Sbjct: 411 SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKL 466

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           A  LT+   +   LK   +  L ++ ++ +Q S
Sbjct: 467 AGYLTQPDFHADSLKQAAEHFLDLHFTETEQPS 499


>gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
 gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
          Length = 902

 Score = 38.4 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 23/79 (29%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
           +      + +   L   L D  R K+ H  +                   T++A+ L R 
Sbjct: 367 LDPAELAESDERALAAWLADPARPKVLHDSKHARLAFAARGWSLAGVARDTELAAYLARP 426

Query: 113 YTNQHGLKDNLKELLGINI 131
               + L D     L   +
Sbjct: 427 DQRSYDLTDLALRYLHREL 445


>gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 1465

 Score = 38.4 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHNLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1440

 Score = 38.4 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 35/140 (25%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPG--------DGTVDIIRIAAGQK---------- 61
            + +  DTET GL  R D   +++++          D    +I                 
Sbjct: 425 TEYVVFDTETTGLNARED--TLIEIAAVKVKAGQIVDTYATLIDPERSLDPKIVELTGIT 482

Query: 62  -----NAPNLVGMLV-----DEKREKIFHYGRFDIAVLFY---TFGVRV--RPVFCTKIA 106
                  P L   L            + H   FD+  L       G+    +PV  T   
Sbjct: 483 NEMVAGQPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVIDTLAL 542

Query: 107 SRLTRTYTNQHGLKDNLKEL 126
           +R+       + LK   ++ 
Sbjct: 543 ARVLYPGEKNYKLKTLTQKF 562


>gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
 gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
          Length = 934

 Score = 38.4 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 47/177 (26%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQL-----SPGDGTVDIIRIAAGQKNAPNLVGMLV---DE 73
            +A+D ET GL P +D  CI+++     S      +   +    KN P+ +  L    ++
Sbjct: 7   YVAIDIETTGLDPEKD--CIIEIGAVRFSNRRVEAEWSSLIKPTKNIPSFITQLTGITND 64

Query: 74  KREK--------------------IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
              K                    + H  RFD++ L     +    V  T   + +    
Sbjct: 65  MVRKAPTIQDVIGDLAHFVGNCPIVGHNIRFDLSFLQKQHILWNNHVIDTYELASVLLPT 124

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            +++ L    +  LGI +    +                A  D    HAL +   EK
Sbjct: 125 ASRYNLGVLAQS-LGILLPATHR----------------ALDDARVTHALFIALLEK 164


>gi|294496412|ref|YP_003542905.1| hypothetical protein Mmah_1765 [Methanohalophilus mahii DSM 5219]
 gi|292667411|gb|ADE37260.1| conserved hypothetical protein [Methanohalophilus mahii DSM 5219]
          Length = 254

 Score = 38.4 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 19  YVDAIA-VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           + D++A VD ET GL P   ++ ++ +  G      +R      N   +V  +       
Sbjct: 83  FSDSVAYVDIETTGLSPSSSKITVIGVYDGKDVKSFVR----GINLEEIVQEMEQYDFLV 138

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK---DNLKELLGIN 130
            F+  RFD+  +   F          +           + GLK    N++ LLGIN
Sbjct: 139 TFNGARFDLPFIQREFPQITM-----EQMHTDLMYPLRRIGLKGGLKNIEHLLGIN 189


>gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila]
 gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210]
          Length = 988

 Score = 38.4 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           I   A            L D + +KI+H   FD  + +   G+ V+     T   +RL  
Sbjct: 137 IDNFAQNTDLIQIFKEYLEDSRYKKIWHNYGFDRHIFYNH-GINVQGFGGDTMHLARLAD 195

Query: 112 T--YTNQHGLKDNLKEL 126
                 ++ L +  K  
Sbjct: 196 PSRGPKEYSLANVTKHY 212


>gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862]
          Length = 1440

 Score = 38.4 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 36/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIRIAAGQKN 62
           P        + +  D ET GL    D+  +++LS           + +  I       + 
Sbjct: 414 PDHTKLDEAEFVVFDVETTGLSAVYDK--VIELSAVKMVKGNVIAEFSEFIDPGFPLSQT 471

Query: 63  APNLVGMLVD----EKREK---------------IFHYGRFDIAVLF-----YTFGVRVR 98
             +L  +  D     K EK               + H   FD+  +      +       
Sbjct: 472 TVDLTSITDDMVRGSKPEKQVFEEFREFYGDAVLVGHNVTFDMGFMQEGYARHQLAPITN 531

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           PV  T I +R        + L    K   GI + +  ++
Sbjct: 532 PVIDTLILARFLYPNMRSYRLNTLAKHF-GIVLEQHHRA 569


>gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 822

 Score = 38.4 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 284 DTVLKALKPLLEDPDKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 343

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  LS +Q+       YAA +      L  
Sbjct: 344 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 403

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 404 VFDARLAA 411


>gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM
           6578]
          Length = 198

 Score = 38.4 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 63/192 (32%), Gaps = 48/192 (25%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRR----DRLCIVQLSPGDGTV---DI 53
           M+T      D P     R    +A D ET GL P R    +  C V+   G+       +
Sbjct: 1   MSTSTDPGRD-PVSIDWRKEVVVAFDLETTGLDPVRHSVVEIAC-VKFQGGEPRAFFSLL 58

Query: 54  IRIAAGQK---------------NAPNL---VGMLVD--EKREKIFHYGRFDIAVL---F 90
           ++                      AP L   + ML         + H   FD++ L   +
Sbjct: 59  VKPPHPIPAEVTKIHGIGDQDVEEAPPLPSVLPMLESFVGTHLLVAHNAPFDLSFLRIEY 118

Query: 91  YTFGVRVRPVF---CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSD 147
              G R  P F    T++ +R    +  ++ L    +  L I + +           LSD
Sbjct: 119 ARCG-RPYPGFRAIDTRLLARSVLPHLGRYSLASLTRA-LDIPLQQHH-------RALSD 169

Query: 148 EQ----LQYAAS 155
                 L YA +
Sbjct: 170 AWACGDLFYALA 181


>gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 1465

 Score = 38.4 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHNLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis
           OL]
 gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
           OL]
          Length = 1402

 Score = 38.4 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 24/148 (16%)

Query: 52  DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR-PVFCTKIAS 107
           D++  A   ++A              + H  +FDI  L   +   G+        T   S
Sbjct: 447 DMVDKAPKLRDAILEFEKFASGSVL-VAHNAQFDIGFLKKAYQECGIIFDYTYIDTLELS 505

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           R   T  + H L   + E L + +    +                A SD      +    
Sbjct: 506 RRLLTGLSSHKLNK-VAEFLNVELRHHHR----------------ADSDAETTAGIFTSL 548

Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL 195
            E+L+  G         N +   A+ DL
Sbjct: 549 MERLKVRG-YKWLK-ELNSIESNAKADL 574


>gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
 gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
          Length = 1463

 Score = 38.4 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPRISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
 gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
          Length = 1431

 Score = 38.4 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 47/160 (29%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGTVDIIRIAAGQKNAPNLVG 68
           P +        +  D ET GL    ++   L  V++  GD    I +  A       L  
Sbjct: 404 PVDQELEKATFVVFDVETTGLSAMYNKIIELAAVKIYDGD---VIDKFEAFADPKHLLSA 460

Query: 69  MLVD---------------EKREK-----------IFHYGRFDIAVLFYTF-----GVRV 97
             +D               E+  K           + H   FDI  L  T          
Sbjct: 461 TTIDLTGITDEMVRGKPDPEQVVKEFMDWAGGSILVAHNASFDIGFLNATLRSGNHEEST 520

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
            PV  T   +R+       H L    K    I +++  ++
Sbjct: 521 LPVIDTLELARVLMPSLKNHRLNTLAKRF-DIELTQHHRA 559


>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1430

 Score = 38.4 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 34/158 (21%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGDGT------VDI--------- 53
             + A      +  D ET GL    ++   L  V++  G+         D          
Sbjct: 400 ATDVALEDATYVVFDVETTGLSAVYNKIIELAGVKIKDGEIIDRFEAFADPKHALSATTI 459

Query: 54  ------IRIAAGQKNAPNLVGMLVD---EKREKIFHYGRFDIAVL---FYTFGVRVR--P 99
                   +  GQ +   +    VD   +    + H   FD+  L     + G      P
Sbjct: 460 ELTGITDDMVQGQPDPEVITKRFVDWCGDSIL-VAHNASFDMGFLEATLRSGGHEPDDYP 518

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           V  T   +R        H L    K    I +++  ++
Sbjct: 519 VIDTLELARTLMPTLKNHRLNTLAKRF-DIELTQHHRA 555


>gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2]
 gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2]
          Length = 625

 Score = 38.4 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 23  IAVDTETLGLMPRRDRLCIVQL-SPGDGTVD--IIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +A D ET GL+ + D  C+      GDG V   ++       +   +  +    +   I 
Sbjct: 37  VATDIETPGLLRQFDINCVTAAWRHGDGRVHSVLLDPDRTPHHDEAVREIYDSAEVI-IL 95

Query: 80  HYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQH-GLKDNLKELLGIN 130
             G FD+  L ++  +    +      T + +R+  T +     L   +K  LG+ 
Sbjct: 96  QNGVFDLPALLHSGLITPEQIREKFLDTLLPARMIDTSSPMARSLTMLVKRHLGVE 151


>gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
 gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
          Length = 907

 Score = 38.4 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 24/151 (15%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI------AAGQKNAPNLVGMLV---DE 73
           +A DTET GL    ++L     S  D     +         A Q +       +    + 
Sbjct: 339 VAFDTETTGLDYINNKLVGFSFSFNDEEAYYVPFGHFYLGVADQVSKDVAKQAMRRIFNS 398

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINI- 131
           K   + H  +FD+  +      +  PV+  + I + L    +    L     +LLG  + 
Sbjct: 399 KV--VGHNIKFDLHFVTRFLEEKDLPVYCDSMILAWLINPES-ALSLDKLSDKLLGHEMV 455

Query: 132 ------SKAQQSSDWSADDLSDEQLQYAASD 156
                  K +   ++S  +L D    YAA D
Sbjct: 456 HFKDTVKKGE---NFSTVELDDA-CVYAAED 482


>gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
 gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
          Length = 855

 Score = 38.4 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 24/109 (22%)

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKE 125
             ++  E  +KI  Y + D+    +    +++  VF   +AS L       H L   ++E
Sbjct: 363 KDIISFENIKKIGAYIQRDL----HFLDCKIKGEVFDVSLASYLLNPERQNHSLDILIRE 418

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
            L          + +    +  +   YAA    +L  L+    E++++ 
Sbjct: 419 YLN--------RTSF----IPQK---YAA----YLFPLKTILEERIKKE 448


>gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium
           cf. saccharolyticum K10]
          Length = 1037

 Score = 38.4 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRT 112
              ++  P  +    D     + H   FD++ + +     G    P V  T   +R    
Sbjct: 260 PKIEEVLPKFLEFCSDA--VMVAHNASFDMSFIRHNAMIQGKSFEPTVLDTVSMARFLLP 317

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139
             N+  L    KE L I++    ++ D
Sbjct: 318 NLNRFKLDTVAKE-LRISLENHHRAVD 343


>gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1]
 gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1]
          Length = 917

 Score = 38.4 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 16/136 (11%)

Query: 14  ECAARYVDAIAV---DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----- 65
           +     +DA A+   DTET  L P   ++  + L    G+   + +A    +AP      
Sbjct: 330 DAWLAKIDAAALTSFDTETTSLDPMVAQIVGLSLCTEPGSAAYVPVAHRGPDAPEQLPRD 389

Query: 66  -----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGL 119
                L   L +  R+K+  + ++D  VL     + +  V   T + S +  ++   H +
Sbjct: 390 EVLAKLKPWLENPARKKVGQHLKYDAQVLANY-DIALNGVEHDTLLESYVLESHRT-HDM 447

Query: 120 KDNLKELLGINISKAQ 135
                  LG+   K +
Sbjct: 448 DSLALRHLGVKTIKYE 463


>gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
 gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
          Length = 902

 Score = 38.4 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 8/76 (10%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTRTYTNQHGLKD 121
           L     D    K+ H    D+         R  PV      T +A+ L         L D
Sbjct: 377 LAAWFADPTPTKVGH----DLKTAVNALTARGWPVGGVACDTALAAYLALPGQQTFDLGD 432

Query: 122 NLKELLGINISKAQQS 137
            ++  L   +     +
Sbjct: 433 LVQRYLHRTLDPEHST 448


>gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82]
          Length = 975

 Score = 38.4 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101
           +  DG V++  I AG      L   +   +    FH   FD  VL Y       PV    
Sbjct: 37  AINDGPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 96

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            T + + L        G    L E+LG+   K
Sbjct: 97  DTMVQA-LAHGLPGSLG---ELCEILGVPQDK 124


>gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
 gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
          Length = 236

 Score = 38.4 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 35/142 (24%)

Query: 44  LSPGDGTVDIIRIA------AGQKNAPNLVGMLVDE------KREKIFHYGRFDIAVLFY 91
           ++PGD  V    +A         K+ P    +  DE        + I H   FD+  +  
Sbjct: 42  INPGDRKVHPDALAVHGITDESLKDKPPFADV-ADEILAFFEGAKWIAHNATFDMGFVNA 100

Query: 92  TFG------VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDL 145
            F       +    V  T   +R          L    +      I  + ++        
Sbjct: 101 EFNRLGRPPILPDMVIDTLAMARRKHPMGPN-SLDALCRRY---GIDNSHRT-------- 148

Query: 146 SDEQLQYAASDVVHLHALRLQF 167
                  A  D   L  + ++ 
Sbjct: 149 ----RHGALLDSELLAEVYIEM 166


>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
 gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
          Length = 912

 Score = 38.4 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 27/164 (16%)

Query: 25  VDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGMLVDEK 74
           +DTET  L+P + +L  + L    G    I +A   ++ P           +   L D  
Sbjct: 339 IDTETTSLIPMQAQLVGISLCCEPGVAAYIPVAHHYQDVPQQLSRELVLEKMKPWLEDAS 398

Query: 75  REKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY----TNQHGLKDN------L 123
           + K+    ++D  +     GV +R +   T + S +  ++     +   L+         
Sbjct: 399 KAKVGQNLKYDSHIFANH-GVNLRGIVHDTLLESYVFESHRSHDMDSLALRHLNRKTITF 457

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           +E+ G    K      +   ++     +YAA D      L  + 
Sbjct: 458 QEVCG----KGASQIGFEQVEIGRA-TEYAAEDADITLQLHQRM 496


>gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 1113

 Score = 38.4 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNAAFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 205

 Score = 38.4 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 24/131 (18%)

Query: 46  PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL----FYTFGVRVR-PV 100
            G     ++     ++  P  +    +     + H  +FD++ L    +   G  ++ PV
Sbjct: 64  TGITNALVVDKPTIEEVFPQFLKFSENSII--VAHNAQFDMSFLNSVSYQITGRSIQNPV 121

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            CT+  ++          L +       I  +K  +                A  D +  
Sbjct: 122 LCTQNLAKRLFPDLPSKSLVNLAYHF-NIPYNKKHR----------------ALEDALVT 164

Query: 161 HALRLQFTEKL 171
           + L  +  + L
Sbjct: 165 YELFKKIIDYL 175


>gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS]
 gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS]
          Length = 929

 Score = 38.4 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101
           + GDG   I   +    +   L   L D    K  H  +    D+A      G ++  V 
Sbjct: 378 ADGDGR-YIDTTSLDPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWKLAGVT 432

Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             T +A+ L R       L D     L   +
Sbjct: 433 SDTALAAYLVRPGQRSFSLDDLSLRYLRREL 463


>gi|167388255|ref|XP_001738490.1| 3-5 exonuclease [Entamoeba dispar SAW760]
 gi|165898251|gb|EDR25173.1| 3-5 exonuclease, putative [Entamoeba dispar SAW760]
          Length = 170

 Score = 38.4 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 8/140 (5%)

Query: 19  YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKI 78
               +  D E +   P       +QLS       ++ +   ++    L+ +L ++   KI
Sbjct: 26  KSSYVGFDVEYVDKTP-----ATIQLSSP-TEAFVLHVFHYKELPKTLIQLLENDGIIKI 79

Query: 79  FHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
               + D+  +   +    +        + L    +   G+    ++LLG    K    +
Sbjct: 80  GVGVKDDLKKIDDKYKTHCQGGLDIGWTAYLIGAISEYRGIDYLGEKLLGEK--KLGGFA 137

Query: 139 DWSADDLSDEQLQYAASDVV 158
            W    L  +Q+ YAA D  
Sbjct: 138 TWGIGRLEKKQIDYAAKDAW 157


>gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 257

 Score = 38.4 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 32/122 (26%), Gaps = 27/122 (22%)

Query: 57  AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL---FYTFGVRVRPV---FCTKI 105
           A    + P    ++ D          + H   FD+  +       G    P+     T +
Sbjct: 88  ADFLSDKPLFAEIVADFLEFIGDVPLVIHNAEFDMRFINAELTRLGFPPLPMSRSIDTVM 147

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
            +R  R    Q  L    +      I    ++               A  D   L  + L
Sbjct: 148 MARK-RFPGAQANLDALCRRF---EIDNTHRT------------KHGALLDSELLAEVYL 191

Query: 166 QF 167
           Q 
Sbjct: 192 QL 193


>gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
 gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
          Length = 240

 Score = 38.4 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 25/102 (24%)

Query: 76  EKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           E + H   FDI+ + + FG+          +  +  T   ++       ++ L    K  
Sbjct: 97  EVVAHNASFDISFMDHEFGLLQPKGPKTADICAILDTLAIAKFLHP-GQKNNLDALCKRY 155

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            GI         D S  +L       A  D   L  + L  T
Sbjct: 156 -GI---------DNSRREL-----HGALLDAEILADVYLLMT 182


>gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes]
          Length = 1465

 Score = 38.4 bits (89), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +      +      +PV  T   +R       +HGL    K    +++ 
Sbjct: 509 VAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 921

 Score = 38.4 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-------GVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPGKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q+ +   A  L+ +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFEARLAA 510


>gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
 gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
          Length = 627

 Score = 38.4 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 22/134 (16%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              ++  P     L  E    + H G FD+A L    G+   P+  T + + L       
Sbjct: 508 PKLEEVLPAFRAFL--EGSVLVAHNGAFDMAFL-RKVGIDQPPLVDTLLLAHLLFPDLKD 564

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           H L+   +   G+ +                     A  D +    +  +    L+  G 
Sbjct: 565 HRLERLAERF-GVPVLGRHT----------------ALGDALMTAEVYARMIPLLKERGF 607

Query: 177 SDL--ATSCCNFLM 188
             L  A   C  L 
Sbjct: 608 RTLGQALRACERLP 621


>gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
 gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
          Length = 1397

 Score = 38.4 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 7/73 (9%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLK 124
            +D     + H   FD   L         G    PV  T   SR      + H L    +
Sbjct: 460 FIDGSIL-VAHNADFDYGFLQVALKKTGQGDISYPVLDTLTLSRALLPDLSNHKLNTLAR 518

Query: 125 ELLGINISKAQQS 137
             L + +    ++
Sbjct: 519 H-LNVRLDNHHRA 530


>gi|221052443|ref|XP_002257797.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
            knowlesi strain H]
 gi|193807628|emb|CAQ38133.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
            knowlesi strain H]
          Length = 1917

 Score = 38.4 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 130  NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             ++K  Q  +W+   LS   ++YA  DV+ L         KL
Sbjct: 1868 EVNKECQIMNWNFRPLSSISVEYAILDVLILKNFFNLIQSKL 1909


>gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232]
 gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232]
          Length = 1465

 Score = 38.4 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPG-----------DGTVDI------- 53
           P +        +  D ET GL    +   ++Q++             D  +D        
Sbjct: 417 PVDMDLHEATYVVFDVETTGLSAMNND--LIQIAASKMFKGNIVEQFDEFIDPGHPLSAF 474

Query: 54  --------IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                    +   G K    ++    D  +    + H   FD+  +      +      +
Sbjct: 475 TTELTGITDKHLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHNLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 567


>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
 gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
          Length = 901

 Score = 38.4 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 63/200 (31%), Gaps = 20/200 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------L 66
            +  +  A D ET  L      +  +  +        I +      AP           L
Sbjct: 319 LKTTELFAFDLETNSLDYMEAEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVLARL 378

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKE 125
             +L D +  K+    +FD  VL    G+ ++ +   + + S +  +   +H +     +
Sbjct: 379 KPLLEDPRHGKVGQNLKFDRNVLANY-GIELQGIHHDSMLESYVLDSTATRHNMDSLALK 437

Query: 126 LLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRLQFTEKLQRLG--RS 177
            L       +  +   +  L   Q+       YAA D      L   F  ++Q+    R 
Sbjct: 438 YLQRTTITYEMVAGKGSKQLPFNQVTIEKAAPYAAEDADISLQLHRYFWPRIQQEESLRR 497

Query: 178 DLATSCCNFLMDRAELDLLG 197
                    +   + ++  G
Sbjct: 498 LYQELEIPLIPVLSRMERNG 517


>gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
 gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
          Length = 1463

 Score = 38.4 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EKDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNIVAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
 gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
          Length = 1449

 Score = 38.4 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 54  IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGVRVR--PVFCTKIA 106
             +  G K+   ++ +     E    + H   FD+  L   +  +G+     PV  T   
Sbjct: 479 DEMVRGSKSEEEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 538

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +R       + GL    K+  G+++ +  ++
Sbjct: 539 ARYLYPEFKRFGLGVLSKKF-GVSLEQHHRA 568


>gi|224044191|ref|XP_002190152.1| PREDICTED: EPH receptor A3 [Taeniopygia guttata]
          Length = 1106

 Score = 38.4 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 94  GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           GV    VFCT+ A+       +  GL+    +   I   K   +
Sbjct: 19  GVTPENVFCTQPAAA---GGKDALGLQKLCCQFHRIEEEKTLTT 59


>gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
 gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
          Length = 1442

 Score = 38.4 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108
           +    A  K  P  +  + D     + H   FD++ +        +  +  V  T   SR
Sbjct: 487 VDDKEAIDKILPRFIEFIGDS--VVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLSR 544

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
                  ++ L + + + LGI++    ++ D
Sbjct: 545 FLFPELKRYKL-NVIAKHLGISLENHHRAVD 574


>gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45
 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1]
          Length = 993

 Score = 38.4 bits (89), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 33/140 (23%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGR-FDIAVLFYTFGV-RV-RPVFCTKIASRLTR 111
            +   +    +L   L D +   ++H G  FD  +L     +      V  T + + L  
Sbjct: 46  DVTQDKTMPADLKAYLDDSEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQA-LAH 104

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSA---------DD----------LS--DEQ- 149
                 GL   L ++  +N  KA+                            L+  +E  
Sbjct: 105 GLPGALGL---LCDIFNVNSDKAKDKE--GKALISLLCKPRPKNSKIQRATALTHAEEWQ 159

Query: 150 --LQYAASDVVHLHALRLQF 167
               YA SD++ +  +    
Sbjct: 160 RFKDYAGSDILAMREIYQHL 179


>gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
 gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
          Length = 255

 Score = 38.4 bits (89), Expect = 0.66,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 56/201 (27%), Gaps = 61/201 (30%)

Query: 23  IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G   L    +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFTEKLQRLGRSDLATSC 183
           + L  T      G+++L    
Sbjct: 172 VYLMMTG-----GQTNLFDEE 187


>gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47368]
          Length = 1463

 Score = 38.4 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNAAFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17570]
          Length = 1463

 Score = 38.4 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNAAFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|222480195|ref|YP_002566432.1| hypothetical protein Hlac_1783 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453097|gb|ACM57362.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 254

 Score = 38.4 bits (89), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 26  DTETLGLMPRRDRLCIVQL-SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRF 84
           D ET GL   RDR+  V     G+ T  +   A     A  L     D      F+  RF
Sbjct: 92  DIETTGLDEHRDRVTTVSFHRDGETTTLV---AGEDLTAERLREQFADASLLATFNGARF 148

Query: 85  DIAVLFYTFGVRVRPVFCT 103
           D+  L   F +       T
Sbjct: 149 DVPFLETAFDIE----IDT 163


>gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974]
 gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1463

 Score = 38.1 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNAAFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057]
          Length = 1462

 Score = 38.1 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGYPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|327197775|ref|YP_004301473.1| gp140 [Brochothrix phage A9]
 gi|299810375|gb|ADJ53174.1| gp140 [Brochothrix phage A9]
          Length = 700

 Score = 38.1 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 32/142 (22%)

Query: 42  VQLSPGDGTVDIIRI--------AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
           + LS  +G    I +            K   +L+G  +     K+ H G+FD+ +     
Sbjct: 254 ISLSWEEGRAVTIPVEHPEYPHTPENLKEVKSLIGKFLIANTYKVAHNGQFDMRISKQLI 313

Query: 94  --GVRVRPVFCTKIASRLTRTY--TNQHGLKDNLKEL-----------------LGINIS 132
              + V     T++   LT +    +  GLK  + +                  L   + 
Sbjct: 314 DQKLTVANSLDTQVGYYLTVSQKTEDAFGLKTIVYQYTDMGGYEDPLDEYKEWFLKKLLK 373

Query: 133 KAQQSSDWSADDL---SDEQLQ 151
           K  +  D  A  +   +   L+
Sbjct: 374 KTARIRDILARPVEKRTPTMLR 395


>gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS]
 gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS]
          Length = 920

 Score = 38.1 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101
           + GDG   I   +    +   L   L D    K  H  +    D+A      G ++  V 
Sbjct: 378 ADGDGR-YIDTTSLDPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWKLAGVT 432

Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             T +A+ L R       L D     L   +
Sbjct: 433 SDTALAAYLVRPGQRSFSLDDLSLRYLRREL 463


>gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA]
 gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae JJA]
          Length = 1463

 Score = 38.1 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLSEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNAAFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
 gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
          Length = 1449

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 54  IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGVRVR--PVFCTKIA 106
             +  G K+   ++ +     E    + H   FD+  L   +  +G+     PV  T   
Sbjct: 479 DEMVRGSKSEEEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 538

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +R       + GL    K+  G+++ +  ++
Sbjct: 539 ARYLYPEFKRFGLGVLSKKF-GVSLEQHHRA 568


>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
 gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
          Length = 1449

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 54  IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGVRVR--PVFCTKIA 106
             +  G K+   ++ +     E    + H   FD+  L   +  +G+     PV  T   
Sbjct: 479 DEMVRGSKSEEEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 538

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +R       + GL    K+  G+++ +  ++
Sbjct: 539 ARYLYPEFKRFGLGVLSKKF-GVSLEQHHRA 568


>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 1440

 Score = 38.1 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 40/140 (28%), Gaps = 35/140 (25%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPG--------DGTVDIIRIAAGQK---------- 61
            + +  DTET GL  R D   +++++          D    +I                 
Sbjct: 425 TEYVVFDTETTGLNARED--TLIEIAAVKVKAGQIVDTYATLIDPERALDPKIVELTGIT 482

Query: 62  -----NAPNLVGMLV-----DEKREKIFHYGRFDIAVLFY---TFGVRV--RPVFCTKIA 106
                  P L   L            + H   FD+  L       G+     PV  T   
Sbjct: 483 NEMVAGQPKLKEALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEEPVIDTLAL 542

Query: 107 SRLTRTYTNQHGLKDNLKEL 126
           +R+       + LK   ++ 
Sbjct: 543 ARVLYPGEKNYKLKTLTQKF 562


>gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
          Length = 1432

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108
           +    A  K  P  +  + +     + H   FD++ +        +  +  V  T   SR
Sbjct: 477 VDDKEAIDKILPRFIEFIGNS--VVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLSR 534

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                  ++ L + + + LGI++    ++ D       D +   A +D+  L        
Sbjct: 535 FLFPELKRYKL-NVIAKHLGISLENHHRAVD-------DAK---ATADI--LLKAFEMLK 581

Query: 169 EK 170
           EK
Sbjct: 582 EK 583


>gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
 gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
          Length = 1432

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108
           +    A  K  P  +  + +     + H   FD++ +        +  +  V  T   SR
Sbjct: 477 VDDKEAIDKILPRFIEFIGNS--VVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLSR 534

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                  ++ L + + + LGI++    ++ D       D +   A +D+  L        
Sbjct: 535 FLFPELKRYKL-NVIAKHLGISLENHHRAVD-------DAK---ATADI--LLKAFEMLK 581

Query: 169 EK 170
           EK
Sbjct: 582 EK 583


>gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 1538

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRT 112
              ++  P  +    D     + H   FD++ + +     G    P V  T   +R    
Sbjct: 576 PKIEEVLPKFLEFCSDA--VMVAHNASFDMSFIRHNAMIQGKSFEPTVLDTVSMARFLLP 633

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139
             N+  L    KE L I++    ++ D
Sbjct: 634 NLNRFKLDTVAKE-LRISLENHHRAVD 659


>gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland]
 gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. Langeland]
 gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. 230613]
          Length = 1432

 Score = 38.1 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASR 108
           +    A  K  P  +  + +     + H   FD++ +        +  +  V  T   SR
Sbjct: 477 VDDKEAIDKILPRFIEFIGNS--VVVAHNAAFDVSFINKNCKDLKIEFKNSVMDTVTLSR 534

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                  ++ L + + + LGI++    ++ D       D +   A +D+  L        
Sbjct: 535 FLFPELKRYKL-NVIAKHLGISLENHHRAVD-------DAK---ATADI--LLKAFEMLK 581

Query: 169 EK 170
           EK
Sbjct: 582 EK 583


>gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49]
          Length = 641

 Score = 38.1 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   +L  +  S   G    + +A    + P           L   L   
Sbjct: 67  AFDTETTSLDPMVAQLVGLSFSTEPGKAAYLPVAHRGPDLPEQLPLDDVLARLKPWLESA 126

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           +R+K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 127 ERKKVGQHLKYDAQVLANY-GIELNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 184

Query: 133 KAQ 135
           K +
Sbjct: 185 KYE 187


>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
 gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
          Length = 920

 Score = 38.1 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI+  E            +  A DTET  L P   RL  +  +   G    + +A    +
Sbjct: 325 TIQTWEQFDAWFAKLEAAELTAFDTETTALDPMVARLVGLSFAVEPGKAAYLPVAHRGPD 384

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
            P           L   L    R+K+  + ++D  VL    G+ +  +   T + S +  
Sbjct: 385 MPEQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIEHDTLLESYVLE 443

Query: 112 TYTNQHGLKDNLKELLGINISKAQ 135
           ++   H +       LG+   K +
Sbjct: 444 SHRT-HDMDSLALRHLGVKTIKYE 466


>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
          Length = 917

 Score = 38.1 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI+  E            +  A DTET  L P   RL  +  +   G    + +A    +
Sbjct: 322 TIQTWEQFDAWFAKLEAAELTAFDTETTALDPMVARLVGLSFAVEPGKAAYLPVAHRGPD 381

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
            P           L   L    R+K+  + ++D  VL    G+ +  +   T + S +  
Sbjct: 382 MPEQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIEHDTLLESYVLE 440

Query: 112 TYTNQHGLKDNLKELLGINISKAQ 135
           ++   H +       LG+   K +
Sbjct: 441 SHRT-HDMDSLALRHLGVKTIKYE 463


>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
 gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
          Length = 1449

 Score = 38.1 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 54  IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGVRVR--PVFCTKIA 106
             +  G K+   ++ +     E    + H   FD+  L   +  +G+     PV  T   
Sbjct: 479 DEMVRGSKSEEEVLRLFREFSEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLEL 538

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +R       + GL    K+  G+++ +  ++
Sbjct: 539 ARYLYPEFKRFGLGVLSKKF-GVSLEQHHRA 568


>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
 gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score = 38.1 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 23/168 (13%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           AVDTET  L   +  L  + L    G    I +A   ++AP           L   L D 
Sbjct: 346 AVDTETTSLEAMQAELVGISLCCEPGRAAYIPVAHNYQDAPVQLSRQHVLEKLKPWLEDA 405

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTY--TNQHGLKDNLKELLGIN 130
            + K+  + ++D  +     GVR+  V   T + S +  ++   +   L    + L    
Sbjct: 406 SKPKLGQHLKYDSHIFANY-GVRLAGVKHDTLLESYVFESHRPHDMDSLAA--RHLERKT 462

Query: 131 IS------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           I+      K      ++   +     +YAA D     AL      +++
Sbjct: 463 ITYAEVCGKGASQIGFNEVAIERA-TEYAAEDAEVTLALHQAMWPQIE 509


>gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
 gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
          Length = 901

 Score = 38.1 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 28/194 (14%)

Query: 4   IRVHEGDIPAECAA-----RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRI-- 56
           +  H     AEC A         A   D ET  L   +     +  +   G    + +  
Sbjct: 302 LHYHLIQTIAECNALCEKLAQKSAFVFDVETDSLNYMQAHWVGISFAVEAGEAWYLPLVH 361

Query: 57  -----AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC-TKIASRLT 110
                    +    L  +  +    KI  + +FD  +L    G+ +  V   T + S   
Sbjct: 362 QNGINLPFAETLAALKNLFENASIRKIGQHLKFDRHILARY-GISLNGVIDDTMLMSYCY 420

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD----------WSADDLSDEQLQYAASDVVHL 160
            +   +H + D     L        +  D          +   DL     QYA  D    
Sbjct: 421 NSTATRHNMDDLADFYLNKQ---TIRFEDIAGSGAKQRRFDEIDLETAM-QYACEDADIT 476

Query: 161 HALRLQFTEKLQRL 174
             L   F +KL   
Sbjct: 477 LQLYQFFQQKLASE 490


>gi|310830408|ref|YP_003965509.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2]
 gi|309249875|gb|ADO59441.1| DNA polymerase III PolC [Paenibacillus polymyxa SC2]
          Length = 311

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 78  IFHYGRFDI-AVLFYTF---GVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD    L + F   G+       CTKI +++ R     +GL+D  K+  G+ I+
Sbjct: 109 VAHNKSFDWDRYLLHYFEKVGIIADNASICTKILAKMYRPNLPAYGLEDICKD-AGVQIT 167

Query: 133 KAQQSSD 139
              ++ D
Sbjct: 168 NHHRALD 174


>gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 398

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 33/186 (17%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +  + V T T  + P +     +Q   G     +    +  + AP L   L  + +  + 
Sbjct: 63  IGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRDAPSFAELAPALFERL--DGKLFVA 120

Query: 80  HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           H   FD   L   F   G    P V CT   SR      ++HGL   +    G+  +   
Sbjct: 121 HNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALFPRESRHGLDALIARH-GLVPAARH 179

Query: 136 QSSDWSADDLSDEQLQYAASDV-------VHLHAL--RLQFTEKLQR-LGRSDLATSCCN 185
           +                A +D         HLH +  R +  +++ R   R  LA     
Sbjct: 180 R----------------ALADADLLWQFWRHLHDVVPRERLRDQIARTTRRFRLAGEVTE 223

Query: 186 FLMDRA 191
            L+D A
Sbjct: 224 ALLDTA 229


>gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
 gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
          Length = 1463

 Score = 38.1 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 38/153 (24%)

Query: 14  ECAARYVDAIAVDTETLGLMP-RRDRLCIVQLSP-----GDGTVDIIRIAAG-------- 59
           E        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 417 EMDLLEATYVVFDVETTGLSAIYND---LIQVAASKMYKGNVIAEFDEFINPGHPLSAFT 473

Query: 60  ----------QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
                      KNA  L  +L +     +    + H   FD+  +      +      +P
Sbjct: 474 TELTGITDDHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPEYKRHGLGPLTKRF-GVALE 565


>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 1449

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 53/193 (27%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGT--------------VDIIRIA 57
            +    +  D ET GL   RDR  +++++      G                   I R+ 
Sbjct: 424 LKDATYVVFDVETTGLSAERDR--LIEIAAVKVKNGSEIDSFESYINPRRPISELITRLT 481

Query: 58  AGQKN----APNLVGMLV------DEKREKIFHYGRFDIAVLFYTF---GVRVRP--VFC 102
           +   +    AP    ++       DE    + H  +FD+  L  +F   G++ +      
Sbjct: 482 SITDDDVKDAPFEEEVMTNFYNWLDEDDILVAHNAKFDLGFLDKSFERLGLKNKNNASID 541

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   SR       +HGL +   +L  + + +  +                A  D      
Sbjct: 542 TLFISRAENKEAKRHGLSNL-AKLYKVRLVQHHR----------------AIYDTKATAE 584

Query: 163 LRLQFTEKLQRLG 175
           + ++  ++L +LG
Sbjct: 585 IFVKMLDQLYKLG 597


>gi|242054355|ref|XP_002456323.1| hypothetical protein SORBIDRAFT_03g033980 [Sorghum bicolor]
 gi|241928298|gb|EES01443.1| hypothetical protein SORBIDRAFT_03g033980 [Sorghum bicolor]
          Length = 203

 Score = 38.1 bits (88), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
           +Q+   D    + +I         L   L D +   +      D+A L   +G+ V    
Sbjct: 74  LQICV-DHRCLVFQILRADYVPDALSRFLADHRFTFVGVGIGDDVAKLGAGYGLWVASAV 132

Query: 102 CT-KIAS-RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD 156
              ++A+  L R    + GL   +  ++G+ + K     D  A  LSD+Q++YA +D
Sbjct: 133 DLRELAADTLGRPVLRRAGLPALVWVVMGLQMQKPHHVRD--APALSDDQVKYACAD 187


>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
 gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
          Length = 1438

 Score = 38.1 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 11/89 (12%)

Query: 61  KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLT 110
           K+AP L  +L +          + H  RFD+  +              P   T   +RL 
Sbjct: 481 KDAPELEPVLKEFVEFVGDGVLVAHNARFDMGFIQAALKNAGMDTLENPYLDTLELARLV 540

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
                 H L     +   + +    ++ D
Sbjct: 541 HPGLKNHRLNTLADKY-KVLLESHHRAID 568


>gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 955

 Score = 38.1 bits (88), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASR 108
           I+ +             L  E    I H  +     L +  G        P+F TK+A  
Sbjct: 414 IVPLPITDTLRAQFARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKLAGY 469

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           LT+   +   LK   +  L I+ ++ +Q S
Sbjct: 470 LTQPDFHADSLKQAAEHFLDIHFTETEQPS 499


>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
 gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
          Length = 920

 Score = 38.1 bits (88), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           TI+  E            +  A DTET  L P   RL  +  +   G    + +A    +
Sbjct: 325 TIQTWEQFDAWFAKLEAAELTAFDTETTALDPMVARLVGLSFAVEPGKAAYLPVAHRGPD 384

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
            P           L   L    R+K+  + ++D  VL    G+ +  +   T + S +  
Sbjct: 385 MPEQLPLDDVLARLKSWLESPDRKKVGQHLKYDAQVLANY-GIELNGIEHDTLLESYVLE 443

Query: 112 TYTNQHGLKDNLKELLGINISKAQ 135
           ++   H +       LG+   K +
Sbjct: 444 SHRT-HDMDSLALRHLGVKTIKYE 466


>gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 950

 Score = 38.1 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKIASR 108
           I+ +             L  E    I H  +     L +  G        P+F TK+A  
Sbjct: 409 IVPLPITDTLRAQFARFLKSEHSRTIVHGYKE----LLHLLGAVDLDMDLPMFDTKLAGY 464

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           LT+   +   LK   +  L I+ ++ +Q S
Sbjct: 465 LTQPDFHADSLKQAAEHFLDIHFTETEQPS 494


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 38.1 bits (88), Expect = 0.85,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 12/126 (9%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDN 122
              L     +E   KI H  ++D  ++ + +G+ +R      + S +  +  + H +   
Sbjct: 450 LSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASI 508

Query: 123 LKELL---GINISKAQQSS---DWSADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRLG 175
            ++ L      I K+++SS   D     +SD Q+ ++A  +   +  L L    KL    
Sbjct: 509 AQKWLSYTRKEILKSRKSSIPID----KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564

Query: 176 RSDLAT 181
              +  
Sbjct: 565 LLHVYE 570


>gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
 gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
          Length = 949

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 1/97 (1%)

Query: 44  LSPGDGTVDIIRI-AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102
           ++  DGT   + + A    +   L   L D    K  H  ++ I  L             
Sbjct: 367 IAAADGTSAYVDVTAVDADDEQALADWLADPAMGKALHEVKWGIHALRSRGWTLAGVTSD 426

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           T +A+ + R       L D     L   +     S D
Sbjct: 427 TSLAAYIVRPGQRTFNLDDLALRYLRRELRADDGSGD 463


>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1438

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 11/89 (12%)

Query: 61  KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLT 110
           K+AP L  +L +          + H  RFD+  +              P   T   +RL 
Sbjct: 481 KDAPELEPVLKEFVEFVGDGVLVAHNARFDMGFIQAALKNAGMDTLENPYLDTLELARLV 540

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
                 H L     +   + +    ++ D
Sbjct: 541 HPGLKNHRLNTLADKY-KVLLESHHRAID 568


>gi|123472141|ref|XP_001319266.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121902045|gb|EAY07043.1| hypothetical protein TVAG_311680 [Trichomonas vaginalis G3]
          Length = 220

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 36/187 (19%)

Query: 2   TTIRVHEGDIPAE----CAARYVDAIAVDTE-------TLGLMPR-RDRLC-IVQLSPGD 48
           TT+ +   D P              I +D E       ++ +       LC ++Q     
Sbjct: 50  TTVMLTTSDSPELPKILKVLELGPFITMDLEWYSQSQDSISIYTFCTADLCILIQ----- 104

Query: 49  GTVDIIRIAAGQKNAPNLVG-MLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                     G      L   +L ++   K       D+  L   FG      +   +  
Sbjct: 105 --------QVGDAPRRELKDFILRNKFVVK---DVGNDMKHLKSVFGYDFDFNYD-DVHR 152

Query: 108 RLTRTYTNQHGLKDNLKELLGINI-----SKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
            +   Y  + G    ++            +K+   SDW    L  +Q+ YA  D V L  
Sbjct: 153 TVFMKYHLKAGFDAMIESYANSEPTAAFKNKSIIFSDWDQIPLEPQQILYATFDCVGLSK 212

Query: 163 LRLQFTE 169
                 E
Sbjct: 213 CYPNLPE 219


>gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
          Length = 375

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 33/186 (17%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +  + V T T  + P +     +Q   G     +    +  + AP L   L  + +  + 
Sbjct: 40  IGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRDAPSFAELAPALFERL--DGKLFVA 97

Query: 80  HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           H   FD   L   F   G    P V CT   SR      ++HGL   +    G+  +   
Sbjct: 98  HNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALFPRESRHGLDALIARH-GLVPAARH 156

Query: 136 QSSDWSADDLSDEQLQYAASDV-------VHLHAL--RLQFTEKLQR-LGRSDLATSCCN 185
           +                A +D         HLH +  R +  +++ R   R  LA     
Sbjct: 157 R----------------ALADADLLWQFWRHLHDVVPRERLRDQIARTTRRFRLAGEVTE 200

Query: 186 FLMDRA 191
            L+D A
Sbjct: 201 ALLDTA 206


>gi|15230500|ref|NP_187852.1| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|12321946|gb|AAG51003.1|AC069474_2 hypothetical protein; 72371-73099 [Arabidopsis thaliana]
 gi|15795165|dbj|BAB03153.1| unnamed protein product [Arabidopsis thaliana]
 gi|332641677|gb|AEE75198.1| DEDDy 3'-5' exonuclease domain-containing protein [Arabidopsis
           thaliana]
          Length = 242

 Score = 38.1 bits (88), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 111 RTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAASDVV--HLHALRL 165
           R     + L+  ++E LG   + + +    SDW   +LS +Q+  A+ DV      A+  
Sbjct: 175 RRSMYNYSLEKIVEENLGYPGVRLDREVSMSDWRVYNLSYDQILQASIDVYACCSLAILD 234

Query: 166 QFTEKLQR 173
              E+  R
Sbjct: 235 HLWEEKNR 242


>gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
          Length = 375

 Score = 38.1 bits (88), Expect = 0.88,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 33/186 (17%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +  + V T T  + P +     +Q   G     +    +  + AP L   L  + +  + 
Sbjct: 40  IGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRDAPSFAELAPALFERL--DGKLFVA 97

Query: 80  HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           H   FD   L   F   G    P V CT   SR      ++HGL   +    G+  +   
Sbjct: 98  HNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALFPRESRHGLDALIARH-GLVPAARH 156

Query: 136 QSSDWSADDLSDEQLQYAASDV-------VHLHAL--RLQFTEKLQR-LGRSDLATSCCN 185
           +                A +D         HLH +  R +  +++ R   R  LA     
Sbjct: 157 R----------------ALADADLLWQFWRHLHDVVPRERLRDQIARTTRRFRLAGEVTE 200

Query: 186 FLMDRA 191
            L+D A
Sbjct: 201 ALLDTA 206


>gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833]
 gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833]
          Length = 893

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
           + ++   G   +      Q++   L   L DE + K  H  +  +  L+   G+ +R + 
Sbjct: 352 IAIATSAGAAYLDPARLTQEDEAALAAWLADETKPKAAHDVKGPLLALWEH-GLDLRGLT 410

Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             T IA+ L         +++ +   L   +
Sbjct: 411 CDTAIAAYLAMPGQRSFPIEELVLRYLNREL 441


>gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa]
 gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 58/207 (28%), Gaps = 63/207 (30%)

Query: 24  AVDTETLGLMP-------RRDRLCIVQLSPGDGT----------VDIIRIAAGQKNAPNL 66
           A DTE   +           +  C+  +  G             VD++    G+      
Sbjct: 71  ACDTEVARIDVKEETPIDHGEITCL-SIYCGPEADFGHGKSCIWVDVLD-GGGRDLLNEF 128

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL---TRTYTNQHGLKDN 122
                D   +K++H   FD  V+    G  V      T   +RL   +R     + L+  
Sbjct: 129 ALFFEDPDIKKVWHNYSFDNHVIENY-GFSVSGFHADTMHMARLWDSSRRLKGGYSLEAL 187

Query: 123 L-------------KELLGINISKAQQSSDWSADDLSDE--------------------- 148
                         KEL+G    K    + +    L  +                     
Sbjct: 188 TGDQKVMRGAGSCYKELIG----KVSMKTIFGKKKLKKDGSEGKMTIIAPVEELQREERE 243

Query: 149 -QLQYAASDVVHLHALRLQFTEKLQRL 174
             + Y+A D +    L      +L ++
Sbjct: 244 PWICYSALDAISTLQLYKSMESELSKM 270


>gi|317487299|ref|ZP_07946094.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
 gi|316921489|gb|EFV42780.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
          Length = 626

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 23/123 (18%)

Query: 70  LVDEKREKIFHYG-RFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELL 127
           L+ + R  + H G  FDI  +       + P +F T  ASRL  T           K+  
Sbjct: 69  LLCQSRLLVAHNGLCFDIPAIQKLHPSLLLPRLFDTLTASRLIWTNLKDLDFTQLRKKSC 128

Query: 128 GI--NISKAQQSSDWSADDL------------------SDEQLQYAASDVVHLHALRLQF 167
                ++ +     W    L                  S++  +Y   DV  L AL    
Sbjct: 129 RFPPKLAGSHSLDAWGQR-LGVMKGDYGKTTENAWSRWSEDMQRYCEQDVEVLEALYRHI 187

Query: 168 TEK 170
            ++
Sbjct: 188 LDQ 190


>gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
 gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
          Length = 653

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 49  GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
           G V I+ +A G+     +V  L D    K  +   F+   L   F   +    CT++   
Sbjct: 42  GPVQIVDLAQGEYLPQEIVEALADPAVVKHAYNAAFEWYCLNRFFYSPIEQWRCTQV-HG 100

Query: 109 LTRTYTNQHGLKDNLKELLGINISK 133
           L   YT   G    + E LGI   K
Sbjct: 101 LYCGYTAGLG---AVGEALGIPQDK 122


>gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 248

 Score = 37.7 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 11/78 (14%)

Query: 60  QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP------VFCTKIASR 108
            K+AP    +  D          IFH   FD+      FG+   P      V  + + +R
Sbjct: 68  LKDAPVFAAVAADIVEFIADSPAIFHNAPFDLGFFDLEFGLLSLPSLDRSRVTDSLVHAR 127

Query: 109 LTRTYTNQHGLKDNLKEL 126
                  + GL       
Sbjct: 128 KLLPAGAKAGLDALCNRY 145


>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
 gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
          Length = 1448

 Score = 37.7 bits (87), Expect = 0.90,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 36/154 (23%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDII---RIAAGQKNAP 64
            ++   +  DTET GL  + ++  +++L+          G+    I     ++    N  
Sbjct: 423 LKHATYVVFDTETTGLSAQYNK--VIELAAVKMKDGEKIGEFEEFIDPGHPLSQTTINLT 480

Query: 65  NLVGML-----VDEKREKIF-----------HYGRFDIAV-----LFYTFGVRVRPVFCT 103
           ++   +      +E+  K+F           H   FD+       L +       P   T
Sbjct: 481 HITDAMVRGSKTEEEVFKLFREFCKGCIIVGHNATFDVDFMNTGYLRHGMPEIKEPWVDT 540

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
              +R+  +   +  L    K  L +++    ++
Sbjct: 541 LPLARILYSDMKRFTLDTLAKR-LKVDLEHHHRA 573


>gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718]
 gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718]
          Length = 687

 Score = 37.7 bits (87), Expect = 0.90,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 42/186 (22%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101
           +  DG V++  I AG      L   +   +    FH   FD  VL Y       PV    
Sbjct: 36  AINDGPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK---------------------AQQSSDW 140
            T + + L        G    L E+LG+   K                       + +  
Sbjct: 96  DTMVQA-LAHGLPGSLG---ELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA-- 149

Query: 141 SADDLSDEQ---LQYAASDVVHLHALRLQFTE------KLQRLGRSDLATS---CCNFLM 188
           ++    +E    + YA  D+  +  +  +  +      +L    R         C +  +
Sbjct: 150 TSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVEL 209

Query: 189 DRAELD 194
            RA +D
Sbjct: 210 ARAAID 215


>gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1446

 Score = 37.7 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 54/184 (29%), Gaps = 53/184 (28%)

Query: 25  VDTETLGLMPRRDRL---CIVQLSPGDGTVDII----------RIAAGQKNAPNLVGMLV 71
           +D ET G  P  +++    I++L  G     I            I A      N+   +V
Sbjct: 426 LDLETTGFSPLTEKITEVGIMKLKDGK---VIDQFSCFVNPEKPIPARVVEVTNITDYMV 482

Query: 72  --DEKREKIF--------------HYGRFDIAVLFYTFGVRVRPV----FCTKIASRLTR 111
              E  EK+F              H   FDI  L +   V           T   ++   
Sbjct: 483 QDAETIEKVFPKMLEFIEGSVLVAHNAEFDIGFLKHNAKVLGYNFDFTYLDTLSLAKEIF 542

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                + L    K  LGI +  A +                A  DV     +     EKL
Sbjct: 543 PDYKSYKLGRIAKN-LGIKVDVAHR----------------ALDDVDTTVKVFNIMLEKL 585

Query: 172 QRLG 175
           +  G
Sbjct: 586 KEKG 589


>gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
 gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
          Length = 1464

 Score = 37.7 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 39/149 (26%), Gaps = 37/149 (24%)

Query: 12  PAECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPN 65
           P +        +  D ET GL     D   ++Q++      G+             +   
Sbjct: 416 PVDLELNEATYVVFDVETTGLSAVHND---LIQIAASKMYKGNIVEQFDEFINPGHHLSA 472

Query: 66  L---------------------VGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRV 97
                                 + M  D  +    + H   FD+  +      +      
Sbjct: 473 FTTELTGITDNHVRNAKPIEQVLQMFQDFCKDTVLVAHNATFDVGFMNANYKRHGMPTIT 532

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +PV  T   +R       +HGL    K  
Sbjct: 533 QPVIDTLELARNLYPEYKRHGLGPLTKRF 561


>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
 gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1444

 Score = 37.7 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 42/170 (24%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59
           T   +  D P   A    + +  D ET GL    D+  +++L+     DG V I +    
Sbjct: 404 TPVAYRADEPRVLA--DAEYVVFDVETTGLSAVYDK--VIELAAVKMKDGQV-IDQFEEM 458

Query: 60  QKNAPNLVGM---------------------------LVDEKREKIFHYGRFDIAVL--- 89
                 L  +                             D     + H   FD+  L   
Sbjct: 459 IDPGFPLSELTINLTHITDDMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNG 517

Query: 90  --FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
              +       PV  T   SR+       H L    K+   +++    ++
Sbjct: 518 YERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566


>gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
 gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
          Length = 880

 Score = 37.7 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 43/179 (24%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIA---VLFYTFGVRVR-P 99
           +   D    I+       ++     +  DEK  K      FDI    VL    G+ +  P
Sbjct: 340 IKTKDSPAYILDPDQAFIDS--FKDVFEDEKILK----NSFDIKEDIVLLNKLGIDLNLP 393

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGIN-------ISKAQQSSDWSADDLSDEQLQY 152
                +   L     + + LK   +  L          + K           LS  +L Y
Sbjct: 394 FDDLMLMHYLIDPSRSSYDLKTLSQAYLDYEVISEVDLLGK-------GKKSLSYGELDY 446

Query: 153 ------------AASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGW 198
                       A  D       + +  + L      DL            A ++++G+
Sbjct: 447 DKLSNYLASELNAIEDA------KAKLVDMLNEYKMYDLYEDIEIKLSKVLANMEIVGF 499


>gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2]
 gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2]
 gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 993

 Score = 37.7 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 39/143 (27%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGR-FDIAVLFYTFGV-RV-RPVFCTKIASRLTR 111
            +   +    +L     D +   ++H G  FD  +L     +      V  T + + L  
Sbjct: 46  DVTQDKTMPADLKAYFDDSEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQA-LAH 104

Query: 112 TYTNQHGLKDNLKELLGINISKA----------------------QQSSDWSADDLS--D 147
                 GL   L ++  +N  KA                      Q+++      L+  +
Sbjct: 105 GLPGALGL---LCDIFNVNSDKAKDKEGKALISLLCKPRPKNSKIQRAT-----ALTHAE 156

Query: 148 EQ---LQYAASDVVHLHALRLQF 167
           E      YA SD++ +  +    
Sbjct: 157 EWQRFKDYAGSDILAMREIYQHL 179


>gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
 gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
          Length = 463

 Score = 37.7 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 31/144 (21%)

Query: 25  VDTETLGLMPRRDRLCIVQLS--PGDGTVD---------------IIRIAAGQKN----A 63
           +D ET GL P  D++  + +    G+  VD               I +I     +    A
Sbjct: 5   IDVETTGLRPTDDKITEIAIYKHDGESVVDSFHSLVNPECYISDRITQITGITNDMVANA 64

Query: 64  PNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR----VRPVFCTKIASRLTRTYT 114
           P    +  D     E    + H   FD   +   F        R   CT   SR      
Sbjct: 65  PKFYEIAKDILAITEGTVFVAHNAHFDYGFVREEFKALGYKFTRKTLCTVRVSRKVFPGL 124

Query: 115 NQHGLKDNLKELLGINISKAQQSS 138
             + L    K    I ++   ++S
Sbjct: 125 PSYSLAKLCKHF-KIQLTNHHRAS 147


>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
          Length = 1444

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 42/170 (24%)

Query: 3   TIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAG 59
           T   +  D P   A    + +  D ET GL    D+  +++L+     DG V I +    
Sbjct: 404 TPVAYRADEPRVLA--DAEYVVFDVETTGLSAVYDK--VIELAAVKMKDGQV-IDQFEEM 458

Query: 60  QKNAPNLVGM---------------------------LVDEKREKIFHYGRFDIAVL--- 89
                 L  +                             D     + H   FD+  L   
Sbjct: 459 IDPGFPLSELTINLTHITDDMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNG 517

Query: 90  --FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
              +       PV  T   SR+       H L    K+   +++    ++
Sbjct: 518 YERHGLADIDNPVIDTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566


>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 375

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 29/147 (19%)

Query: 9   GDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDIIRIAAGQKNAPN 65
            D+     A     + VD ET G  P   R+    +V++ PG  +     +  GQ   P 
Sbjct: 2   SDLYPSDPASEQPLVFVDLETTGGSPAEHRITEIGVVEIGPGHMSTWTTLVNPGQPIPPF 61

Query: 66  LVGM--LVDEKRE------------------KIF--HYGRFDIAVLFYTF---GVRVRP- 99
           +  +  + D+                     K+F  H   FD   L   F   G+   P 
Sbjct: 62  IQQLTGISDDMVRDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNPD 121

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           V CT   SR      ++HGL   ++  
Sbjct: 122 VLCTVKLSRALFPRESRHGLDALIERY 148


>gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36]
 gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis
           SK36]
          Length = 1462

 Score = 37.7 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 38/139 (27%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +     ++PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKIIQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035]
 gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035]
          Length = 688

 Score = 37.7 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 19/102 (18%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + H   FD+A L     V  R    PV CT + S     ++ QH L    +   GI I  
Sbjct: 579 VAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLMSAGLFDHSGQHTLDALCERF-GITIPP 637

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             + +              A  D V    + ++    LQ  G
Sbjct: 638 EARHT--------------AMGDTVATAEVFVRMLGLLQAKG 665


>gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
 gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
          Length = 256

 Score = 37.7 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 51/186 (27%), Gaps = 56/186 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFT 168
           + L  T
Sbjct: 172 VYLMMT 177


>gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705]
 gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705]
          Length = 955

 Score = 37.7 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105
           +  I+ +         L   L  E    I H  +     L +  G        P+F TK+
Sbjct: 411 SAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYKE----LLHLLGAVDLDLDLPMFDTKL 466

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           A  L +   +   LK   +  L I+ ++ +Q S
Sbjct: 467 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 499


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score = 37.7 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 22/166 (13%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111
           I      + +   L   L DE R K  H  +  +  L+   G+ +R +   T +A+ L  
Sbjct: 369 IDPTTLTEADETALRAWLGDESRPKAVHDAKGPMLALWAQ-GMELRGLTCDTALAAYLAM 427

Query: 112 TYTNQHGLKDNLKELLGINISKAQ----QSS------DWSADDLSDEQLQYAASDVVHLH 161
                  L+D ++  L   +        Q+S      D +A +L    L         + 
Sbjct: 428 PGQRTFLLEDLVRAYLQRELRGEAETGGQASLFDDEDDDTARELGLRALA--------VR 479

Query: 162 ALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLGW-ENVDIFS 205
            L       L+  G + L        +   AEL+  G   + D FS
Sbjct: 480 ELADALEAFLEPRGGTHLMREVELPLVTVLAELERAGIAADGDYFS 525


>gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 473

 Score = 37.7 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 37/151 (24%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSPG-------------DGTVDI---IRIA-------- 57
            +  DTET GL    D   IVQ++               D  V+    I  A        
Sbjct: 270 FVVFDTETTGLSVETD--AIVQIAAQRVMNGRLVKGEVFDAYVNPGRAIPPASTRIHGVR 327

Query: 58  -AGQKNAPNLVGMLV-----DEKREKIFHYGRFDIAVLF---YTFGVR-VRPVFCTKIAS 107
            A   +AP++  ++       +    + H   FDI +L       G++   PV  T + S
Sbjct: 328 DADVADAPSIEQVIPAFHHFSKDAVLVAHNAPFDIGLLRQQERATGIKWDHPVLDTVLLS 387

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
            +    + +H L    +  L I I    + +
Sbjct: 388 AVVFGISQEHSLDALCQR-LAIEIPAQHRHT 417


>gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
 gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
          Length = 939

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 24/166 (14%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS----PGDGTVDIIRIAAGQKNA--PNLVGMLVDEKRE 76
           I+ DTET G     + + +V +S     G+G    +     Q  A   + + +       
Sbjct: 368 ISFDTETTGTDA--NAVDLVGMSFSIKAGEGWYIPVPADKAQAQAIVDSFLPLFNTTHIT 425

Query: 77  KIFHYGRFDIAVLFYTFGVRVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLG---INIS 132
            I    ++D+ V+   +GV    PVF T +A  L      + G+     + L    ++I 
Sbjct: 426 LIGQNIKYDMIVM-KWYGVEFNGPVFDTMLAHYLIEPEGRR-GMDLLSAQYLQYEPVSIE 483

Query: 133 -------KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                  K Q +     D   D+  +YA  D      L+ +F   L
Sbjct: 484 TLIGKKGKGQGN---MRDVEIDKIKEYAVEDADITLQLKEKFAPLL 526


>gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 912

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL-- 109
           +  +  G +              +K++H   FD  V+    G+++      T   +RL  
Sbjct: 190 VDTLKLGDEGWAIFKPYFESPDAKKVWHNYSFDRHVIENHGGIKLAGFAADTMHMARLWN 249

Query: 110 -TRTYTNQHGLKDN 122
             R     + L+  
Sbjct: 250 SNRKLEGGYSLEAL 263


>gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
 gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
          Length = 256

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 61/201 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKEIAQDFLDYINGAELLIHNAPFDVGFMDYEFCKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFTEKLQRLGRSDLATSC 183
           + L  T      G+++L  + 
Sbjct: 172 VYLMMTG-----GQTNLFDAE 187


>gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 930

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 30/147 (20%)

Query: 21  DAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR--IAAGQKNAPNLVGM--LVDE 73
             +A+D ET GL    D    + +V++  G    D  +  +  G      +  +  L D+
Sbjct: 4   SFVALDLETTGLDCWSDDIIEIGMVKVIDGQER-DFFQSLVRPGGPLPVKIKQLTGLKDD 62

Query: 74  K----------REKIF----------HYGRFDIAVLFYTFG-VRVRPVFCTKIASRLTRT 112
                        KI           H  +FD   L    G      ++ T   +R+ + 
Sbjct: 63  DFQSAPWFQTIIPKILTFIGDLPLVGHNIKFDRDFLAAACGHQLPNDLYDTLELARILQP 122

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139
               H L +  K + G+ ++   ++ D
Sbjct: 123 SAPSHRLGELCK-IAGVEVNVEHRALD 148


>gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
 gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
          Length = 1462

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPQITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 950

 Score = 37.7 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 50  TVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFCTKI 105
           +  I+ +         L   L  E    I H  +     L +  G        P+F TK+
Sbjct: 406 SAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYKE----LLHLLGAVDLDLDLPMFDTKL 461

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           A  L +   +   LK   +  L I+ ++ +Q S
Sbjct: 462 AGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494


>gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
 gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
          Length = 1462

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1]
          Length = 1462

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 38/147 (25%), Gaps = 37/147 (25%)

Query: 14  ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67
           +        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 416 DMELSNATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472

Query: 68  GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99
             L              E+  K           + H   FD+  +      +      +P
Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           V  T   +R       +HGL    K  
Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
 gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
          Length = 900

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 35/167 (20%)

Query: 63  APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTRT 112
           AP    +  D     +    + H   FD+  +   F       + + V  T    ++   
Sbjct: 68  APYFNEVAEDIYDQIKDCIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTLELFKIAFP 127

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD----------------WSADDL-SDEQLQYAAS 155
               + L +  +    I + KA   +D                + +  L + +QL Y + 
Sbjct: 128 TDKSYQLSELAQAH-DIPLDKAH-RADEDATTTAKLMIKAFKKFESLPLDTQKQLYYLSK 185

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS---CCNFLMDRAELDLLGWE 199
           ++ +   L     E + R  +S            ++ R ++DL G +
Sbjct: 186 NLKY--DLYNILFEMV-RTNQSKPLDDQFGQFEQIIYRKQVDLKGPQ 229


>gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1438

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 61  KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLT 110
           K+AP++  ++ +          + H  RFDI  +  T           PV  T   +RL 
Sbjct: 481 KDAPDVEPVMKEFVAFAGDAVLVAHNARFDIGFIQATLRKMGLPEMTNPVLDTLELARLL 540

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
                 H L     +   + +    ++ D
Sbjct: 541 FPTMKNHRLNTLTSKY-KVALESHHRAID 568


>gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7]
          Length = 877

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 17/94 (18%)

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSAD-DLSDEQ--------- 149
           +F   IA+ L     + +      ++ LG+ +      +DW     L++           
Sbjct: 391 IFDAAIAAYLINPLKDSYTYDGIAQDFLGMTVP---SRADWLKKMTLTEASEKEKESFGH 447

Query: 150 -LQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
            L Y+A              ++L+  G   L   
Sbjct: 448 YLAYSAM---IPVQAYSTLKKRLEETGMDRLFDE 478


>gi|225554428|gb|EEH02726.1| RNA exonuclease [Ajellomyces capsulatus G186AR]
          Length = 736

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 46/161 (28%), Gaps = 39/161 (24%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60
            V E DI         + +++D E   T G   +  R+ +V     DG V +  +     
Sbjct: 330 TVLENDIQLGSITAGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDDLVKPDE 386

Query: 61  -------------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95
                                         L+ +        I H    D++ L      
Sbjct: 387 PIIDYLTRFSGITKEMLEPVTTRLPDVQQKLLTLFTPRTIL-IGHSLNSDLSALK----- 440

Query: 96  RVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
              P +  T I     R    +  LK   ++ LG  I K Q
Sbjct: 441 LTHPFIVDTSIIYPHPRGPPLKSSLKWLSQKYLGKEIQKGQ 481


>gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
 gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42]
          Length = 240

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 50/177 (28%), Gaps = 52/177 (29%)

Query: 26  DTETLGLMPRRDRL----------------CI-VQLSPGDGTVDIIRIA------AGQKN 62
           DTET GL  R DR+                 + + ++PGD  V    +A         K+
Sbjct: 7   DTETTGLDNRADRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLKD 66

Query: 63  APNLVGMLVDE------KREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRLT 110
                 +  DE        + I H   FD+  +   F       +    V  T   +R  
Sbjct: 67  KKPFAAV-ADEILAFFGDGKWIAHNATFDMGFINAEFARIGLPPILPDKVIDTLSMARRK 125

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                   L    +      I  + ++               A  D   L  + ++ 
Sbjct: 126 HPMGPN-SLDALCRRY---GIDNSHRT------------KHGALLDSELLAEVYIEM 166


>gi|294949466|ref|XP_002786211.1| hypothetical protein Pmar_PMAR019889 [Perkinsus marinus ATCC 50983]
 gi|239900368|gb|EER18007.1| hypothetical protein Pmar_PMAR019889 [Perkinsus marinus ATCC 50983]
          Length = 76

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 140 WSADDLSDEQLQYAASDVVHLHALRL 165
           W    L  + + YAA DV+ L  LR 
Sbjct: 50  WFYRPLQPDMISYAARDVMCLPLLRE 75


>gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405]
 gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678]
 gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058]
          Length = 1462

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 38/147 (25%), Gaps = 37/147 (25%)

Query: 14  ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67
           +        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 416 DMELSNATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472

Query: 68  GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99
             L              E+  K           + H   FD+  +      +      +P
Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           V  T   +R       +HGL    K  
Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
 gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
          Length = 900

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 35/167 (20%)

Query: 63  APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTRT 112
           AP    +  D     +    + H   FD+  +   F       + + V  T    ++   
Sbjct: 68  APYFNEVAEDIYDQIKDCIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTLELFKIAFP 127

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD----------------WSADDL-SDEQLQYAAS 155
               + L +  +    I + KA   +D                + +  L + +QL Y + 
Sbjct: 128 TDKSYQLSELAQAH-DIPLDKAH-RADEDATTTAKLMIKAFKKFESLPLDTQKQLYYLSK 185

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS---CCNFLMDRAELDLLGWE 199
           ++ +   L     E + R  +S            ++ R ++DL G +
Sbjct: 186 NLKY--DLYNILFEMV-RTNQSKPLDDQFGQFEQIIYRKQVDLKGPQ 229


>gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408]
          Length = 1462

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 38/147 (25%), Gaps = 37/147 (25%)

Query: 14  ECAARYVDAIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLV 67
           +        +  D ET GL     D   ++Q++      G+   +               
Sbjct: 416 DMELSNATYVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFT 472

Query: 68  GMLVD------------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRP 99
             L              E+  K           + H   FD+  +      +      +P
Sbjct: 473 TDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQP 532

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           V  T   +R       +HGL    K  
Sbjct: 533 VIDTLEFARNLYPEYKRHGLGPLTKRF 559


>gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 726

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102
             G G+V ++ +A G++    ++  L D    K      F+   +    G+ + P    C
Sbjct: 117 CDG-GSVQLVDLAQGEEIPAKILDALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHC 175

Query: 103 TKIASRLTRTYTNQHGLKDNLK 124
           T+I + +     +     + LK
Sbjct: 176 TQIRALMLGLPASLQSCGEVLK 197


>gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
 gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
          Length = 911

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 26/124 (20%)

Query: 78  IFHYGRFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L       G      P   T   +R+       + L D  K+ LG++  
Sbjct: 88  VAHNVDFDLPFLQAELERAGWPPFTGPTIDTVELARIVLPTAESYKLGDLAKQ-LGLHHD 146

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT-SCCNFLMDRA 191
           +  Q                A SD      L +     L+RLGR  L T      L+   
Sbjct: 147 RPHQ----------------ADSDAEVTAKLFIAL---LERLGRLPLVTLEQLRRLVHHL 187

Query: 192 ELDL 195
           + D+
Sbjct: 188 KSDI 191


>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
 gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
          Length = 1490

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 71/221 (32%), Gaps = 56/221 (25%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRL---CIVQLSPG------DGTVDI-IRIAAGQKNAPNL 66
            + V A+  D ET GL P  D++     V++  G         VD  I I+        +
Sbjct: 454 LKGVPAVVFDIETTGLSPTEDKIIEIGAVKMLDGVVVDKFSEFVDPKIPISPATTKLTTI 513

Query: 67  V------GMLVDEKREK----------IFHYGRFDIAVLF---YTFGVRVR-PVFCTKIA 106
                    L+D    K          + H   FDI+ +       G++       T   
Sbjct: 514 TDDMVIGAPLIDAVVPKFVEFCGDCVLVGHNVGFDISFIIENCRRLGIKKEFTCIDTMGL 573

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           SR       +H L+   K L  +N                 EQ   A SD      +   
Sbjct: 574 SRAFYPQQAKHSLEAVCKTLKVVN-----------------EQHHRAISDAECTAEIFKI 616

Query: 167 FTEKLQRLGRSDLATSCCNFLMDRAELDLLGWENVDIFSHS 207
           F EKL   G  DL     + +    ELD+   + +    HS
Sbjct: 617 FQEKLYEKGIYDL-----DAIKAIEELDIEAVKRL----HS 648


>gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 906

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 51/154 (33%), Gaps = 34/154 (22%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101
           + G+G   I   A    +   L   L D    K  H  +    D+A      G  +  V 
Sbjct: 364 ADGEGR-YIDTSALQPDDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWTLAGVT 418

Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI----SKAQQSSDWSADDL------SDEQL 150
             T +A+ L R       L+D     L   +    ++ QQ S      L      +D+Q 
Sbjct: 419 SDTALAAYLVRPGQRSFSLEDLSLRYLRRELRAETAEQQQLS------LLDDNDGTDDQ- 471

Query: 151 QYAASDVVHLH-----ALRLQFTEKLQRLGRSDL 179
              A   + L       L     E+L R+  + L
Sbjct: 472 ---AVQTLILRAVAVLDLADALDEELARINSTSL 502


>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
 gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
          Length = 1433

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L   F      + + PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
 gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
          Length = 1433

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L   F      + + PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
 gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
          Length = 253

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 53/191 (27%), Gaps = 56/191 (29%)

Query: 18  RYVDAIAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI 56
           +    I +DTET G+       +  CI+++                     D  VD   I
Sbjct: 6   QPTRQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPDRPVDPDAI 65

Query: 57  ------AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR--------V 97
                      + P    +        +  E + H   FDI  + Y F           +
Sbjct: 66  KVHGITDEMLADKPTFNEIAQQFIEYIQGAELLIHNASFDIGFMDYEFSKLNIGLNTSEI 125

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
             +  T   +R       ++ L       LGI+ SK                L  A  D 
Sbjct: 126 CLITDTLQMAR-QMYPGKRNSLDALCDR-LGIDNSKRT--------------LHGALLDA 169

Query: 158 VHLHALRLQFT 168
             L  + L  T
Sbjct: 170 EILADVYLTMT 180


>gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440]
 gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440]
          Length = 899

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL-FYTFGVRVRPVF-CTKIASRLTR 111
                   +   L G L D  R K+ H  +   AVL F   G  ++ +   T+IA+ L R
Sbjct: 365 DPGRLDAADEDALAGWLADVSRPKVLHDSK--PAVLAFAARGCAIQGIARDTQIAAYLAR 422

Query: 112 TYTNQHGLKDNLKELLGINI 131
                + L D     L   +
Sbjct: 423 PDQRSYDLTDLALRYLHREL 442


>gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20]
 gi|1169396|sp|P43745|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon
 gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae
           Rd KW20]
          Length = 256

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 56/201 (27%), Gaps = 61/201 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQL---------SPGDGTVDIIRIAAGQK--------- 61
           I +DTET G+       +  CI+++           G+     I+               
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVHGI 67

Query: 62  ------NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFTEKLQRLGRSDLATSC 183
           + L  T      G+++L    
Sbjct: 172 VYLMMTG-----GQTNLFDEE 187


>gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355]
          Length = 1462

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSVFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCKDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642]
          Length = 921

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 14/128 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTR 111
                 L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  
Sbjct: 383 DTVLKALKPLLEDPDKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLD 442

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRL 165
           +   +H     + + L       Q  +   A  LS +Q+       YAA +      L  
Sbjct: 443 STATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHE 502

Query: 166 QFTEKLQR 173
            F  +L  
Sbjct: 503 VFDARLAA 510


>gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
 gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
          Length = 1512

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 23/131 (17%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG----VRVRPVFCTKIASR 108
           +I     ++  P  +    +     + H   FD++ +          R   +  T   +R
Sbjct: 548 VIDAPKIEEILPEFMK-FCEGAIM-VAHNAEFDMSFIKKNCKDQGIEREFTIIDTVALAR 605

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           +     N+  L   + + L +++    +                A  D      + ++F 
Sbjct: 606 ILLPNLNRFKLDT-VAKALNVSLENHHR----------------AVDDAACTAEIFVKFI 648

Query: 169 EKLQRLGRSDL 179
           E L+  G  +L
Sbjct: 649 EMLKERGMENL 659


>gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 437

 Score = 37.7 bits (87), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 81  YGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
             ++D  VL    G+ +R + F T + S +  +   +H +       L     K     D
Sbjct: 1   NLKYDRGVLQNY-GIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKH---KTITFED 56

Query: 140 W---SADDLSDEQL------QYAASDVVHLHALRLQFTEKLQR 173
                 + L+  Q+      +YAA D      L L+   +LQ+
Sbjct: 57  IAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQ 99


>gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
 gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
          Length = 1437

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 33/158 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
           PA         I  D ET GL    D    L  V++  G+                   I
Sbjct: 411 PAHRLLEEDTYIVFDVETTGLSAVYDTIIELAAVKIRGGEIIDKFERFANPHHPLSATTI 470

Query: 55  RIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR------P 99
            +     +    AP+++ ++ D     +    + H   FD+  L   +   ++      P
Sbjct: 471 ELTGITDDMVRDAPDVIDVVRDFREWIDDDILVAHNASFDMGFLNVAYKRLLKVEKAQNP 530

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           V  T    R        H L    K+   I +++  ++
Sbjct: 531 VIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567


>gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1554

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASR 108
           ++         P  +  + D     + H   FD+  + +     G+   P V  T   +R
Sbjct: 590 VLPYPKIDVILPQFLDFVGDA--VLVAHNASFDVGFISHFAEEQGLHFNPTVLDTVTIAR 647

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           L     N+  L   + + L I+++   ++ D
Sbjct: 648 LLLPNLNRFKLDT-VAKALNISLANHHRAVD 677


>gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 44  LSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
              G   + +  +  G KN          D    K++H   FD  V+    G +V     
Sbjct: 422 FGDGKSCIWVDVLDGGGKNLLVEFAPFFQDPSIRKVWHNYSFDNHVIENY-GFKVSGFHA 480

Query: 102 CTKIASRL---TRTYTNQHGLKDN 122
            T   +RL   +R  +  + L+  
Sbjct: 481 DTMHMARLWDSSRRTSGGYSLEAL 504


>gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330]
          Length = 1462

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115]
          Length = 1462

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353]
          Length = 1462

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 922

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A+DTET  L P   R+  + L+   G    + +A      P           L   L   
Sbjct: 344 ALDTETTSLDPLAARIVGISLAVAPGEAAYLPLAHDYPGVPAQLPCDEVLARLKSWLESP 403

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTN---QHGLKDNLKELLGI 129
              KI  + ++D  VL    G+ +  V   T + S +  +  +    H L       LG+
Sbjct: 404 GHAKIGQHLKYDQHVLANH-GIALAGVRHDTLLQSYVLESGKDGVRGHDLGQLATRHLGL 462


>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
 gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
          Length = 1433

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L   F      + + PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059]
          Length = 1462

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160]
          Length = 1462

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
 gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
          Length = 1433

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L   F      + + PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087]
          Length = 1462

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150]
          Length = 1462

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72]
 gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72]
          Length = 734

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 23/117 (19%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRTYTNQHG 118
            P+      D     + H   FD+  L       G+R  +PV  T + S +     + H 
Sbjct: 616 LPSFHAFAADT--VLVAHNAAFDMRFLQLKEDLTGLRFDQPVLDTLLLSAVIHPNQDSHR 673

Query: 119 LKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
           L+   +  LGI +                     A  D +    + L+    L   G
Sbjct: 674 LEAIAER-LGITVVGRHT----------------ALGDAMVTAEVFLKLVPLLAEKG 713


>gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1]
 gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 242

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 54/179 (30%), Gaps = 54/179 (30%)

Query: 26  DTETLGLMPRRDR---LCIVQLS--------------PGDGTVDII-RIAAGQKNA---- 63
           DTET GL PR DR   L  V+L+              P   +V    +   G  +A    
Sbjct: 7   DTETTGLDPREDRVIELGCVELANRFPTGRTLHYFINPQGRSVHPDAQAVHGISDADLAG 66

Query: 64  -PNLVGML------VDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTK-IASRL 109
            P    +L      +D  +  + H   FDI  +   F       +    V  T  IA R 
Sbjct: 67  KPVFAEILDEFLEFIDGAKL-VAHNANFDIGFINAEFQRVGQPYIDPARVIDTLAIARRK 125

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                N   L    +      I  + ++               A  D   L  + ++  
Sbjct: 126 HPMGPN--SLDALCRRY---GIDNSHRT------------KHGALLDAELLAEVYIELA 167


>gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68]
          Length = 385

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101
           +  DG V++  I AG      L   +   +    FH   FD  VL Y       PV    
Sbjct: 37  AINDGPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 96

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            T + + L        G    L E+LG+   K
Sbjct: 97  DTMVQA-LAHGLPGSLG---ELCEILGVPQDK 124


>gi|170102162|ref|XP_001882297.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164642669|gb|EDR06924.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 900

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 116 QHGLKDNLKELLGINISKAQQ---SSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
           +  L +    +LG  ++K      S++W   +LS +Q+ Y A D      +  +   +L+
Sbjct: 310 RVSLTELSALVLGFKLNKDDAIRVSTEWENINLSQDQIMYIAQDAHASKCIYEKLV-QLE 368

Query: 173 RLG 175
           + G
Sbjct: 369 KYG 371


>gi|258570479|ref|XP_002544043.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237904313|gb|EEP78714.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 462

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 70  LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--HGLKDNLKELL 127
            ++ +   I H    D+ VL    G+    +  ++I ++     T +   GLK   +  L
Sbjct: 299 FMNPQTILIGHSLANDLKVL----GMVHTRIVDSEILTKKAVGPTCKRVWGLKTLCETFL 354

Query: 128 GINI---SKAQQS 137
           GI I    K   S
Sbjct: 355 GIRIQAGKKGHSS 367


>gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 239

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 51/185 (27%), Gaps = 56/185 (30%)

Query: 23  IAVDTETLGLMPRR-DRLCIVQLS---------PGDGTVDIIRIAAGQK----------- 61
           I +DTET GL  R  DR  ++++           G      I    G             
Sbjct: 4   IVLDTETTGLDWRTGDR--VIEIGCVELVNRSLTGRHFHVYINPDRGIDAEAVAVHGITE 61

Query: 62  ----NAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTK 104
               + P   G+     D     E + H   FD+  L    G+  RP        V  T 
Sbjct: 62  EFLADKPRFAGIVEAFEDFVRDAELVIHNANFDVGFLNCELGLLGRPKLDVLCAGVIDTL 121

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
             ++  +    +  L           I    ++            L  A  D   L  + 
Sbjct: 122 RMAK-EQNPGKKASLDALCDRY---EIDNGHRT------------LHGALLDAELLAEVY 165

Query: 165 LQFTE 169
           L  T 
Sbjct: 166 LAMTR 170


>gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846]
          Length = 255

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 56/201 (27%), Gaps = 61/201 (30%)

Query: 23  IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G   L    +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFTEKLQRLGRSDLATSC 183
           + L  T      G+++L    
Sbjct: 172 VYLMMTG-----GQTNLFDEE 187


>gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152]
 gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152]
          Length = 910

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 44  LSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
           ++  DG    I +      +   L   L D    K  H  +  +  L    G  +  +  
Sbjct: 365 IAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAKSAMHAL-RGRGWTLGGLTS 423

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            T +A+ L R       L D     L   +
Sbjct: 424 DTALAAYLVRPGQRSFNLDDLSLRYLHREL 453


>gi|319898105|ref|YP_004136302.1| DNA polymerase iii epsilon subunit [Haemophilus influenzae F3031]
 gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031]
          Length = 256

 Score = 37.3 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 51/186 (27%), Gaps = 56/186 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFT 168
           + L  T
Sbjct: 172 VYLMMT 177


>gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 205

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 24/126 (19%)

Query: 52  DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL----FYTFGVRVR-PVFCTKIA 106
            +I     ++  P+ +    +     I H  +FDI+ L    F   G  ++ PV CT + 
Sbjct: 70  LVIDKPKIEQVFPHFLEFTKNSII--IAHNAKFDISFLNEASFQLTGKLIQNPVICTLVL 127

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           +           L +       I   +  +                A +D    + L  +
Sbjct: 128 ANRLFPDLKSKSLTNLAYHF-NIPYHRKHR----------------ALADAEVTYELFKK 170

Query: 167 FTEKLQ 172
           F E LQ
Sbjct: 171 FVEYLQ 176


>gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 229

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 54/178 (30%)

Query: 26  DTETLGLMPRRDRL----------------CI-VQLSPGDGTVDIIRIAA-GQKN----- 62
           DTET GL  R DR+                 + + ++PGD  V    +A  G  +     
Sbjct: 7   DTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLKD 66

Query: 63  -------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRL 109
                  A  ++    D K   I H   FD+  +   F       +    V  T   +R 
Sbjct: 67  KKAFAEVAEEILAFFGDAK--WIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARR 124

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                    L    +      +  + ++               A  D   L  + ++ 
Sbjct: 125 KHPMGPN-SLDALCRRY---GVDNSHRA------------KHGALLDSELLAEVYIEM 166


>gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis]
          Length = 1437

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 33/158 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
            A         +  D ET GL    D    L  V++  G+                  II
Sbjct: 411 AAHRLLEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATII 470

Query: 55  RIAAGQKN----APNLVGMLVDEKR-----EKIFHYGRFDIAVLFYTFGVRV------RP 99
            +     +    AP++V ++ D +        + H   FD+  L   +   +       P
Sbjct: 471 ELTGITDDMLQDAPDVVDVIRDFRVRIGDDILVAHNASFDMGFLNVAYKKLLEVEKAKNP 530

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           V  T    R        H L    K+   I +++  ++
Sbjct: 531 VIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567


>gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
          Length = 925

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPV 100
           ++ G  T  I        +   L   L D     + H G      L +     G+    +
Sbjct: 361 ITQGKQTAIINMSRTTDDDRDALKEWLQDPDHPIVVHDG----KGLLHMLSSEGLTATNI 416

Query: 101 -FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
              T++AS L         L+  ++  LG ++
Sbjct: 417 EHDTRLASYLIHPDFGSFDLESVVRRRLGRDL 448


>gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 824

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRL 109
           +  +  G            +   +K++H   FD  V+    G+++      T   +RL
Sbjct: 103 VDTLRGGDGVWEVFKEYFENANVKKVWHNYSFDRHVVENHHGIKLAGFAADTMHMARL 160


>gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16]
 gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16]
          Length = 1430

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 15/102 (14%)

Query: 50  TVDIIRIAAGQKN----APNLVGMLV-----DEKREKIFHYGRFDIAVL---FYTFGV-- 95
           +  II +     +    AP    +L            + H   FDI  L   +   G   
Sbjct: 461 SATIIELTGITDDMVQGAPEPAEVLKQFREFAGNATLVAHNASFDIGFLNVGYKKLGFSE 520

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
              PV  T    R        H L    K+   I +    ++
Sbjct: 521 VTNPVIDTLELGRFLYPELKNHRLNTLCKKF-DIELVSHHRA 561


>gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K]
 gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K]
          Length = 1072

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 18  RYVDAIAVDTETLGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPN---------- 65
             VD  A D ET  L P ++  +  ++ LS  +G    I +     N  N          
Sbjct: 212 DGVDITAWDLETNSLKPDKEGSKPLVLSLSWRNGQGVTIPLYKSDFNWENGQDDIDEVLE 271

Query: 66  -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVFCTKIASRLTRTYT--NQHGLKD 121
            L   L  ++  K+ H G++DI  L  T   +    +  TK+   L  T        L D
Sbjct: 272 LLKNWLASKEDIKVAHNGKYDIKFLMSTENFKDFESIQDTKVGWYLAVTQEVKESLRLSD 331

Query: 122 NLKELLGI 129
              E+  +
Sbjct: 332 LAYEVTDV 339


>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
 gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
          Length = 939

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 8/75 (10%)

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVF-CTKIASRLTRTYTNQ 116
            +   L   L D    K       D+  + +     G  +  +   T +A+ L +     
Sbjct: 411 DDEAALGEWLADPAVPK----ASHDVKAVLHALRGRGWTLAGLTSDTALAAYLAKPGQRS 466

Query: 117 HGLKDNLKELLGINI 131
             L D     L   +
Sbjct: 467 FDLADLALRYLRREL 481


>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1433

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV----RVR-PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L   F      + + PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELARFLFPDMKNHRLNTLCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|242079315|ref|XP_002444426.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor]
 gi|241940776|gb|EES13921.1| hypothetical protein SORBIDRAFT_07g021745 [Sorghum bicolor]
          Length = 112

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 148 EQLQYAASDVVHLHALRLQFTEKLQRL 174
           +Q+ YA  D  +L  +     ++LQR 
Sbjct: 2   DQVLYAREDTHYLLYIYDLMRQRLQRE 28


>gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
 gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
          Length = 471

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 54/160 (33%), Gaps = 37/160 (23%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS----------PGDGTVDIIRIAAGQK- 61
            +   + +  +  DTET GLMP +D +  VQ+           PG+    ++        
Sbjct: 270 EQQLLKDLSFVVFDTETTGLMPNKDEI--VQIGAVRVVNRRIIPGETVDQLVNPGRPIPA 327

Query: 62  --------------NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYT----FGVRVR 98
                         NAP+ V    D     +    + H   FD+A L         V   
Sbjct: 328 ASTGVHRITDDMVVNAPDPVTATSDFHVFAKDAVIVAHNAPFDMAFLQRYGHMSGHVWDH 387

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
           P+  T + S +      +H L       L I I +A + +
Sbjct: 388 PILDTVLLSAVVFGAEQEHTLDALCAR-LDIEIPEALRHT 426


>gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
 gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           pumilus ATCC 7061]
          Length = 1437

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 35/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
           P          +  D ET GL    D    L  V++  G+                   I
Sbjct: 411 PEHRLLEDATYVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDRFEAFANPHHPLSATTI 470

Query: 55  RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRVR------ 98
            +     +    AP++V ++ D      +    + H   FD+  L   +   ++      
Sbjct: 471 ELTGITDDMVKDAPDVVDVVRDFKEWIGQDIL-VAHNASFDMGFLNTAYKRLLKTDKASN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           PV  T    R        H L    K+   I +++  ++
Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567


>gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
 gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
          Length = 224

 Score = 37.3 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 22/96 (22%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVF------CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           + H   FD+  L    G   +P+        T + +R  R    Q+ L    +   GI+ 
Sbjct: 82  VIHNAAFDVKFLNAELGWVKKPLIAPARAVDTLLIAR-RRFPGAQNSLDALCRRF-GIDN 139

Query: 132 SKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           SK                L  A  D   L  + L+ 
Sbjct: 140 SKRT--------------LHGALLDSEILAEVYLEL 161


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 49  GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASR 108
           GT  I   A      P L    V+     IFH  +  +            P   T +A  
Sbjct: 367 GTAGIEPAALAGTLEPLLR---VNP----IFHDAKRALVWFSNAGAGVADPGGDTMVAGY 419

Query: 109 LTRTYTNQHGLKDNLKELLGINI 131
           L     ++H L +   E L + +
Sbjct: 420 LLNPSASRHDLPELCLEHLNLAL 442


>gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus thermodenitrificans NG80-2]
 gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 911

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 25/111 (22%)

Query: 78  IFHYGRFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L       G      P   T   +R+       + L D  K+ LG++  
Sbjct: 88  VAHNVDFDLPFLQAELERAGWPPFTGPTIDTVELARIVLPTAESYKLGDLAKQ-LGLHHD 146

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSC 183
           +  Q                A SD      L +     L+RLGR  L T  
Sbjct: 147 RPHQ----------------ADSDAEVTAKLFIAL---LERLGRLPLVTLE 178


>gi|305681196|ref|ZP_07404003.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659401|gb|EFM48901.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Corynebacterium matruchotii ATCC 14266]
          Length = 444

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 57  AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV----F-CTKIA 106
                +AP+   +  +       +  + H  +FD+            PV    F C+  A
Sbjct: 158 PDMVTDAPDFAAVFPEVVAYVADQVLVAHNAQFDLTAFSRACHATGTPVPHWKFACSLAA 217

Query: 107 SRLTRTYTNQHGLKDNLKELLGINIS 132
           SR  +     H L   + + LG+ + 
Sbjct: 218 SRAAKLGITSHRL-PVVAQHLGVELD 242


>gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180]
 gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM
           180]
          Length = 240

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 57/186 (30%), Gaps = 58/186 (31%)

Query: 23  IAVDTETLGLMPRRD-RL----C--IV-----------------QLSPGDGTVDIIRIAA 58
           I +DTET GL PR   R+    C  +V                 Q+      V  I  A 
Sbjct: 4   IVLDTETTGLEPREGHRIIEIGCVELVDRRPTGRNFHEYLNPERQIDAEAEAVHGISNAF 63

Query: 59  GQKN------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----------VRPVFC 102
                     A  LV  L     E I H   FD+  L + FG+           +  V  
Sbjct: 64  LADKPRFAERAERLVEYLR--GAELIIHNAAFDVGFLDHEFGLWRGAEAPRIADLCTVTD 121

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           + + +R       ++GL    K      I  + ++            L  A  D   L  
Sbjct: 122 SLLMARKLHP-GQRNGLDALCKRYA---IDNSHRT------------LHGALLDAEILAD 165

Query: 163 LRLQFT 168
           + L  T
Sbjct: 166 VYLAMT 171


>gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032]
 gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
           SAFR-032]
          Length = 1437

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 35/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
           P          +  D ET GL    D    L  V++  G+                   I
Sbjct: 411 PEHRLLEDATYVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDRFEAFANPHHPLSATTI 470

Query: 55  RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRVR------ 98
            +     +    AP++V ++ D      +    + H   FD+  L   +   ++      
Sbjct: 471 ELTGITDDMVRDAPDVVDVVRDFKEWIGQDIL-VAHNASFDMGFLNTAYKRLLKTDKASN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           PV  T    R        H L    K+   I +++  ++
Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567


>gi|125557002|gb|EAZ02538.1| hypothetical protein OsI_24647 [Oryza sativa Indica Group]
 gi|125598888|gb|EAZ38464.1| hypothetical protein OsJ_22848 [Oryza sativa Japonica Group]
          Length = 159

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 10/127 (7%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           R   +QL  G   +      A       L   L DE+   + +  R D   L    G+ V
Sbjct: 15  RPGTLQLCAGHRCLVFQLAHADAAVPAALRRFLADERVVFVGYGVRSDCRKLEEQHGLEV 74

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLG----INISKAQQSSDWSADDLSDEQLQYA 153
                T     L          +   +E LG        +   +S W A  LS EQ+QYA
Sbjct: 75  AR---TVELRSLAGMGNTSM--QRMAEEHLGWDGVTTKPRKVGTSRWDARRLSKEQVQYA 129

Query: 154 ASDVVHL 160
             D  +L
Sbjct: 130 CVDA-YL 135


>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 623

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 64/213 (30%), Gaps = 55/213 (25%)

Query: 1   MTTIRVHEGDIPAE-----CAARYVDAIAVDTETLGLMPRRDR---LCIVQLSPGD---G 49
           MT  ++   D+P        A R    + VD ET G     DR   +  V++  G+    
Sbjct: 33  MTVEQLSFEDLPEADEFTRSALRDTTFVVVDLETTGGSADDDRITEIGAVKIRGGEVLGE 92

Query: 50  TVDIIRI---------------AAGQKNAPNLVGML-----VDEKREKIFHYGRFDIAVL 89
              ++                  A   +AP +  +L            + H  RFD+  L
Sbjct: 93  FATLVDPGRAIPPQIVALTGITTAMLYDAPRIEEVLPAFAEFARGTVLVAHNARFDMGFL 152

Query: 90  FYTFG--VRVRPV---FCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSA 142
             +        P     CT + +R  L+R       L     EL  +++    +      
Sbjct: 153 RKSAARMRLPWPFSTSLCTVVMARRILSRQEAPTVKLSAL-AELFQVSVRPTHR------ 205

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
                     A  D      +  +  E++   G
Sbjct: 206 ----------ALDDARATVEVFHRLLERVGNQG 228


>gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 706

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 21/106 (19%)

Query: 74  KREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
               + H   FD+  L       G+R  +PV  T + + + + +   H L+      LG+
Sbjct: 597 DTVLVGHNVAFDMRFLQLKEAATGLRFDQPVLDTLLLASIAQPHEPSHSLEAIAAR-LGV 655

Query: 130 NISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
            I                 Q   A SD +    + L+    L+  G
Sbjct: 656 EI----------------TQRHNALSDALVTAEVFLRLLPLLKARG 685


>gi|294632014|ref|ZP_06710574.1| ribonuclease D [Streptomyces sp. e14]
 gi|292835347|gb|EFF93696.1| ribonuclease D [Streptomyces sp. e14]
          Length = 120

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 3/44 (6%)

Query: 10 DIPAECAARYVDAIAVDTETLGLMPRRDRLCIVQLS---PGDGT 50
          D      A     +AVD E         R  +VQL     GDG 
Sbjct: 53 DRAVAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGDGA 96


>gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4]
          Length = 236

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 50/181 (27%), Gaps = 54/181 (29%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-------------------PGDGTVDIIRIA------ 57
           I  DTET GL  + DR  ++++                    P D  +    +A      
Sbjct: 4   IVFDTETTGLESKLDR--VIEIGGIELFNHFPTGRSFHVYINPADRAIHPDALAVHGITP 61

Query: 58  AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR------VRPVFCTKIA 106
              K+ P    ++ D     +  + + H   FD+  +   F            V  T   
Sbjct: 62  EFLKDKPVFADIVEDLVAFFDGAKWVAHNATFDMGFINAEFERLGRPLVGPEHVIDTLSL 121

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           +R          L    +      I  + ++               A  D   L  + ++
Sbjct: 122 ARRKHPMGPN-SLDALCRRY---GIDNSHRT------------KHGALLDSELLAEVYIE 165

Query: 167 F 167
            
Sbjct: 166 M 166


>gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24]
 gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24]
          Length = 955

 Score = 37.3 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 11/129 (8%)

Query: 9   GDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCI-VQLSPGDGTVDIIRIAAGQKNAPN 65
            ++ A  AA      A+AVD   +      D   + +     DG    I ++     A N
Sbjct: 379 AELSAFLAAGAGQRSAVAVDL--VPGRIGEDAAALAI---VRDGAAVYIDLSGQDAEAEN 433

Query: 66  -LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNL 123
            L   L D +  K+ H  +  +  L    G+ +  V   T I+  L +     + L +  
Sbjct: 434 VLAAWLRDPEAPKVMHGFKAALKALSAR-GLELEGVVDDTSISGYLIQPDRRTYELAELA 492

Query: 124 KELLGINIS 132
           +  L I IS
Sbjct: 493 QHHLNIEIS 501


>gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301]
 gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301]
          Length = 235

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 56/187 (29%), Gaps = 60/187 (32%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP-------------------------GDGTVDIIRIA 57
           I +DTET GL   +    +++++                          G   V  I + 
Sbjct: 4   IFLDTETTGLYHAQGH-RVIEVAAVEVINRRLTKQHFHYYLNPDREIDQGAQEVHGISLE 62

Query: 58  AGQKNAPNLVGMLVDEKR------EKIFHYGRFDIAVLFYTFGV--------RVRPVFCT 103
             Q + P+   +  +E        E I H   FD+  L   FG+            +  T
Sbjct: 63  FLQ-DKPHFADI-ANELIAFIADSELIMHNAPFDVGFLNREFGLIEQKPVEAITAKITDT 120

Query: 104 -KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
            KIA  +     N   L    K   GI+ SK                L  A  D   L  
Sbjct: 121 LKIAKEMRPGQRN--SLDALCKHY-GIDNSKRT--------------LHGALLDAELLAD 163

Query: 163 LRLQFTE 169
           + +  T 
Sbjct: 164 VYMAMTR 170


>gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056]
          Length = 866

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 37/139 (26%)

Query: 22  AIAVDTETLGLM-PRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNLVGMLVD--- 72
            +  D ET GL     D   ++Q++      G+   +                 L     
Sbjct: 424 YVVFDVETTGLSAVYND---LIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITD 480

Query: 73  ---------EKREK-----------IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIAS 107
                    E+  K           + H   FD+  +      +      +PV  T   +
Sbjct: 481 EHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFA 540

Query: 108 RLTRTYTNQHGLKDNLKEL 126
           R       +HGL    K  
Sbjct: 541 RNLYPEYKRHGLGPLTKRF 559


>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
 gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
          Length = 1450

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53
            A  A      +  D ET GL    D    L  V++  G      D  +D          
Sbjct: 415 DAREALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474

Query: 54  ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100
                   +  G K+   ++ M +   +    + H   FD+  L   +  +G+     PV
Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   +R       + GL    K+  G+++ +  ++
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570


>gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
 gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
          Length = 930

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 8/63 (12%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF----CTKIASRLTR 111
            A        L  +L D   E + H    D+  L         P+      T +A+ L  
Sbjct: 393 PAQWSALPEALRALLADPAVEIVAH----DVKSLARLLRTLDAPLAGVLGDTMLAAYLLG 448

Query: 112 TYT 114
              
Sbjct: 449 QEG 451


>gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
 gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
          Length = 229

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 27/115 (23%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTY 113
           A + +  + D K   I H   FDI  L +   +          +     T + +R +   
Sbjct: 77  ADDFLEFISDSKL--IIHNAPFDIKFLNHELSLLKRTEIKLLELANTIDTLVMAR-SMFP 133

Query: 114 TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             ++ L    K              D S       Q+  A  D   L  + +  T
Sbjct: 134 GAKYNLDALCKRF----------KVDNSGR-----QVHSALKDAALLAEVYVALT 173


>gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
 gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
          Length = 1025

 Score = 37.3 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 43  QLSPGDGTVD----IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           Q   GDG         +I   +     L  +L      K+    +F  AVL    G+ +R
Sbjct: 473 QSGDGDGLFAAGLAPDQIGP-RDALDALKPILESAGVAKVGFAIKF-AAVLLAQHGLTLR 530

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            +   ++ S         H L    +  LG  +
Sbjct: 531 NIDDPQLMSYALDAGRGSHALDALSESNLGHTL 563


>gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
 gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
          Length = 1437

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 36/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---------GDGTVDIIRIAAGQKN 62
           PA       + +  D ET GL    D+  +++LS           + +  I    +  + 
Sbjct: 411 PAHVELADAEYVVFDVETTGLSAAYDK--VIELSAVKMVKGNVIAEFSEFIDPGFSLSQT 468

Query: 63  APNLVGMLVD----EKREK---------------IFHYGRFDIAVL-----FYTFGVRVR 98
             +L  +  D     K EK               + H   FD+  +      +  G    
Sbjct: 469 TVDLTSITDDMVRGSKSEKEVFTAFREFYGDAILVGHNVTFDMGFMNEGYERHGMGSITN 528

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           PV  T   +R        + L    K   G+ + +  ++
Sbjct: 529 PVIDTLTLARFLYPNMRSYRLNTLAKHF-GVLLEQHHRA 566


>gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 44  LSPGDGTVDIIRIA-AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
              G   + +  +   G+           D    K++H   FD  V+    G +V     
Sbjct: 422 FGDGKSCIWVDVLDGDGKNLLVEFAPFFQDPSIRKVWHNYSFDNHVIENY-GFKVSGFHA 480

Query: 102 CTKIASRL---TRTYTNQHGLKDN 122
            T   +RL   +R  +  + L+  
Sbjct: 481 DTMHMARLWDSSRRTSGGYSLEAL 504


>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
 gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
          Length = 969

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 28/191 (14%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL---------- 66
           A+     A +TET  L P + +L    L+        I +    +   +L          
Sbjct: 375 AQEQGFFAFNTETTSLDPMQAKLVGFSLALQPEKAAYIPLEHFDEGEEDLLRGGHIASQI 434

Query: 67  ---------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
                      +L D    KI    ++D  V+     + +     T + S         H
Sbjct: 435 ETRKALALLKPILEDSSVLKIGQNIKYDWLVMKQY-DIIISSFDDTMLLSYAFDAGILTH 493

Query: 118 GLKDNLKELLGIN-IS-KAQQS-----SDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
            + D  +  L    IS K         + ++  DL    L YAA        L      +
Sbjct: 494 NMDDLSERWLKHKPISYKDLTHNGKKITSFAQVDLKQATL-YAAERADITLRLWQVLKPQ 552

Query: 171 LQRLGRSDLAT 181
           L   G + +  
Sbjct: 553 LVARGMTKIYE 563


>gi|22831293|dbj|BAC16147.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|24414039|dbj|BAC22288.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 195

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 10/127 (7%)

Query: 38  RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV 97
           R   +QL  G   +      A       L   L DE+   + +  R D   L    G+ V
Sbjct: 51  RPGTLQLCAGHRCLVFQLAHADAAVPAALRRFLADERVVFVGYGVRSDCRKLEEQHGLEV 110

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLG----INISKAQQSSDWSADDLSDEQLQYA 153
                T     L          +   +E LG        +   +S W A  LS EQ+QYA
Sbjct: 111 AR---TVELRSLAGMGNTSM--QRMAEEHLGWDGVTTKPRKVGTSRWDARRLSKEQVQYA 165

Query: 154 ASDVVHL 160
             D  +L
Sbjct: 166 CVDA-YL 171


>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
          Length = 1457

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLK 120
           +  +  +     + H  RFD   L   F         +PV  T   SR       +H LK
Sbjct: 477 IKQIFQN-SIL-VAHNARFDYGCLVEFFKELELYELEQPVIDTLEVSRFLAPTQKRHNLK 534

Query: 121 DNLK 124
           +  K
Sbjct: 535 ELAK 538


>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 1457

 Score = 36.9 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLK 120
           +  +  +     + H  RFD   L   F         +PV  T   SR       +H LK
Sbjct: 477 IKQIFQN-SIL-VAHNARFDYGCLVEFFKELELYELEQPVIDTLEVSRFLAPTQKRHNLK 534

Query: 121 DNLK 124
           +  K
Sbjct: 535 ELAK 538


>gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
 gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus]
 gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
           zooepidemicus]
          Length = 1465

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD+  +      Y      +PV  T   +R       +HGL    K  
Sbjct: 509 VAHNASFDVGFMNANYDRYGLAKISQPVIDTLELARNLYPEYKRHGLGPLTKRF 562


>gi|325087366|gb|EGC40676.1| exonuclease [Ajellomyces capsulatus H88]
          Length = 782

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 47/161 (29%), Gaps = 39/161 (24%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60
            V + DI         + +++D E   T G   +  R+ +V     DG V +  +     
Sbjct: 376 TVLKNDIQLGSITAGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDDLVKPDK 432

Query: 61  -------------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95
                                         L+ +L       I H    D++ L      
Sbjct: 433 PIIDYLTRFSGITKEMLEPVTTRLPDVQQKLLTLLTPRTIL-IGHSLNSDLSALK----- 486

Query: 96  RVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
              P +  T I     R    +  LK   ++ LG  I K Q
Sbjct: 487 LTHPFIVDTSIIYPHPRGPPLKSSLKWLSQKYLGKEIQKGQ 527


>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 1450

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53
            A  A      +  D ET GL    D    L  V++  G      D  +D          
Sbjct: 415 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474

Query: 54  ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100
                   +  G K+   ++ M +   +    + H   FD+  L   +  +G+     PV
Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   +R       + GL    K+  G+++ +  ++
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570


>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
 gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
          Length = 1450

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53
            A  A      +  D ET GL    D    L  V++  G      D  +D          
Sbjct: 415 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474

Query: 54  ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100
                   +  G K+   ++ M +   +    + H   FD+  L   +  +G+     PV
Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   +R       + GL    K+  G+++ +  ++
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570


>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
 gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
          Length = 1450

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53
            A  A      +  D ET GL    D    L  V++  G      D  +D          
Sbjct: 415 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474

Query: 54  ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100
                   +  G K+   ++ M +   +    + H   FD+  L   +  +G+     PV
Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   +R       + GL    K+  G+++ +  ++
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570


>gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
          Length = 238

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 33/125 (26%)

Query: 60  QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR----------PVFCTK 104
             + P    +  D        + + H   FD+  + + FG+  +           V  T 
Sbjct: 64  LTDKPTFRDVAEDFVNFIRGAQLVIHNAPFDVGFMDHEFGMEPKTRGVITKDICSVLDTL 123

Query: 105 -IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            +A ++     N   L    K      I  + +            +L  A  D   L  +
Sbjct: 124 AVARKMHPGQKN--NLDALCKRY---GIDNSHR------------ELHGALLDAEILADV 166

Query: 164 RLQFT 168
            L  T
Sbjct: 167 YLLMT 171


>gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 921

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFY-------TFGVRVRPV-FCTKIASRLTRTYTNQH 117
           L  +L D  + K+  + +F I +L           G+ ++ V F T + S +  +   +H
Sbjct: 389 LKPLLEDPGKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRH 448

Query: 118 GLKDNLKELLGINISKAQQSSDWSADDLSDEQL------QYAASDVVHLHALRLQFTEKL 171
                + + L       Q  +   A  L+ +Q+       YAA +      L   F  +L
Sbjct: 449 DRDSLVAKYLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARL 508

Query: 172 QR 173
             
Sbjct: 509 AA 510


>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
 gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
          Length = 1450

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53
            A  A      +  D ET GL    D    L  V++  G      D  +D          
Sbjct: 415 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474

Query: 54  ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100
                   +  G K+   ++ M +   +    + H   FD+  L   +  +G+     PV
Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   +R       + GL    K+  G+++ +  ++
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570


>gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 1465

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD+  +      Y      +PV  T   +R       +HGL    K  
Sbjct: 509 VAHNASFDVGFMNANYDRYGLAKISQPVIDTLELARNLYPEYKRHGLGPLTKRF 562


>gi|167464945|ref|ZP_02330034.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase
           domains [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384415|ref|ZP_08058101.1| hypothetical protein PL1_0947 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150773|gb|EFX44233.1| hypothetical protein PL1_0947 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 358

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 22/134 (16%)

Query: 81  YGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLK---ELLGINISKAQQ 136
             R+D+ V     G  +R  V+ T  A  L   +  ++GLK  ++   +  GI       
Sbjct: 3   SARYDLHVAQND-GYEIRGCVWDTLDAMHLLNEHEEKYGLKILVEKYGKYFGIPGP-IYT 60

Query: 137 SSDW----SADDLSDEQL-QYAASDVVHLHALRLQFTEKLQRL-GRSDLATSCCNFLMDR 190
             D     S    S E +  YA  DV++   L     E +++  GR      C       
Sbjct: 61  FEDLFGNGSPAPFSVELVGIYAIKDVLYSWKLCEWQMEMMRKSPGRL---LECY------ 111

Query: 191 AELDLLGWENVDIF 204
           AE+D      VD+F
Sbjct: 112 AEID-SKLPEVDVF 124


>gi|157873497|ref|XP_001685257.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128328|emb|CAJ08493.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 891

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 118 GLKDNLKELLGINISKAQQ--SSDWS--ADDLSDEQLQYAASDVV 158
            LK+    L G  + K      SDW      L+  Q++YAA D  
Sbjct: 214 SLKNMCSALTGRELGKDMAVVMSDWGGCHGALTPLQIEYAAQDAE 258


>gi|224541223|ref|ZP_03681762.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525868|gb|EEF94973.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
           15897]
          Length = 212

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 23/104 (22%)

Query: 74  KREKIFHYGRFDIAV----LFYTFGVRVRP-VFCT-KIASRLTRTYTNQHGLKDNLKELL 127
               I H  RFDI      L   +GV  +     T KIA +L      ++ LKD      
Sbjct: 107 NDVIIGHNVRFDIRFIYDALLRDYGVLFQNDYIDTLKIARKLLHEDLKRYRLKDLADHY- 165

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
             +I  +      +           A +D    H +     E +
Sbjct: 166 --HIDYSH-----AHR---------AVNDCEITHDVYEMMMEDI 193


>gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 596

 Score = 36.9 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 30/112 (26%), Gaps = 34/112 (30%)

Query: 74  KREKIFHYGRFDIAVLFY--TFGVRVRPV-----FCTKIASRLTRTYTNQHGLKDNLKEL 126
               I H  RFD AV F     G+    +       +   + L         L    ++L
Sbjct: 79  DCVWISHNARFDRAVFFRMKELGIVPAHIMPREWHDS---AALAVYLQAPRNLAGAAEKL 135

Query: 127 LGINISKAQQSSDWSADDLSDEQ--------------LQYAASDVVHLHALR 164
           LG   +KA +          D                L YA  D      L 
Sbjct: 136 LGEKPNKAIR----------DAMKGIQGGLLCHDKAVLDYALDDARLACELW 177


>gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500]
          Length = 1411

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 27/147 (18%)

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRL---TRTY 113
            G +           E   K++H   FD  + +    + V+     T   +RL    R  
Sbjct: 755 QGNEILEVFRPYFESESIYKVWHNYGFDRHIFYNH-NIDVKGFGGDTLHMARLWDAARNG 813

Query: 114 TNQHGLKDNLKELL-----------GINISKAQQSS--DWSADDLS---------DEQLQ 151
              + L+   KELL           G N  KA      D     L          +  ++
Sbjct: 814 RGGYSLEGLSKELLDNHKTSIKDLFGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETWIE 873

Query: 152 YAASDVVHLHALRLQFTEKLQRLGRSD 178
           Y++ D      LR     KLQ +   +
Sbjct: 874 YSSLDAELTWNLRENLQAKLQNMVWMN 900


>gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
 gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
          Length = 1025

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 43  QLSPGDGTVD----IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
           Q   GDG         +I   +     L  +L      K+    +F  AVL    G+ +R
Sbjct: 473 QSGDGDGLFAAGLAPDQIGP-RDALDALKPILESAGVAKVGFAIKF-AAVLLAQHGLTLR 530

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            +   ++ S         H L    +  LG  +
Sbjct: 531 NIDDPQLMSYALDAGRGSHALDALSESNLGHTL 563


>gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
 gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
          Length = 547

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 46/146 (31%), Gaps = 33/146 (22%)

Query: 14  ECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGD------GTVDIIRIAAGQKN-- 62
           E     V  + VD ET G  P  D +     V++  G+        V I  +  G  +  
Sbjct: 30  EPLLSEVTFVVVDLETTGTRPGGDEITEIGAVRIRGGEVQAELSTFVSIDGVLPGHISRL 89

Query: 63  ----------APNLVGMLV-----DEKREKIFHYGRFDIAVLFYTFGVRVR-----PVFC 102
                     AP+L  ++            + H  RFD+  L              P  C
Sbjct: 90  TGIAPEDLVGAPSLGEVMATFLEFSRGAVLVAHNARFDLGFLRAAAAATGHRWPDPPSVC 149

Query: 103 TK-IASRLT-RTYTNQHGLKDNLKEL 126
           T  +A R+  R  T  H L      L
Sbjct: 150 TLALARRVLHRGETRGHRLGVLAAHL 175


>gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
 gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
          Length = 1465

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD+  +      Y      +PV  T   +R       +HGL    K  
Sbjct: 509 VAHNASFDVGFMNANYDRYGLAKISQPVIDTLELARNLYPEYKRHGLGPLTKRF 562


>gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
 gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
          Length = 908

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 41/150 (27%), Gaps = 35/150 (23%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPV 100
           ++ G     I        +   L   L D    K  H  +    D+       G  +  V
Sbjct: 364 VASGGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAKLAIHDL----QGRGWTLAGV 419

Query: 101 F-CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD--- 156
              T +A+ L R       L D     L   +      +D      + EQ Q +  D   
Sbjct: 420 TSDTALAAYLVRPGQRSFALDDLSLRYLKREL-----RAD------NPEQQQLSLLDDSD 468

Query: 157 --------VVHLH-----ALRLQFTEKLQR 173
                    + L       L     E+L R
Sbjct: 469 GVDDQAVQTLLLRASAVVDLADALDEELAR 498


>gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SS3/4]
          Length = 1376

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 25/120 (20%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYT 114
            K  P  +  + D     + H   FD++ + +  G+         V  T   +R      
Sbjct: 481 DKVLPRFLEFVGDAAL--VAHNASFDVSFISHNAGLLGLSFDPT-VLDTVTLARALLPNL 537

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           N+  L   + + LG+++    +                A  D      + L+F E L++ 
Sbjct: 538 NRFKLDT-VAKALGVSLENHHR----------------AVDDAEATAGIFLKFVEMLKKQ 580


>gi|109521836|ref|YP_655732.1| gp52 [Mycobacterium phage Qyrzula]
 gi|91980780|gb|ABE67498.1| gp52 [Mycobacterium phage Qyrzula]
          Length = 600

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 22  AIAVDTETLGLMPRRDRLCI----VQLSPGDGTV--DIIRIAAGQKNAPNLVGMLVDEKR 75
            +A D ET GL    +  C+    +     DGT+   ++       +      +     +
Sbjct: 33  PVAADIETPGLDRNFEINCLTAAWI---GWDGTIESVLLDPIRWPAHRQAARDVFARACK 89

Query: 76  EKIFHYGRFDIAVLFYTFGV---RVRPVFCTKIASRLTRTYTNQHG 118
             +FH   FD+  L++   +    +R +  T + +R    Y + +G
Sbjct: 90  L-VFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFA--YPDSYG 132


>gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4]
          Length = 649

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV--RVRPVFC 102
           +  D  V+I+ +A+G+K   N++  ++D    K  +   F+   L   F +        C
Sbjct: 38  AVDDEEVEIVDLASGEKIPANILKAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRC 97

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           T + + +        G  D + + L +   K 
Sbjct: 98  TSVHALMLGLP----GYLDGVAKCLKLQGQKM 125


>gi|32442311|gb|AAP82226.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGW 198
           DWS    + E L Y   D      L      +++    +D      +  M  A+ +  G+
Sbjct: 56  DWST--YTPEMLDYCIQDTQVTLRLYELLQRRMET--YADYIKLEMDMAMLMAQQEASGF 111

Query: 199 E 199
            
Sbjct: 112 R 112


>gi|218185470|gb|EEC67897.1| hypothetical protein OsI_35576 [Oryza sativa Indica Group]
          Length = 186

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 12/135 (8%)

Query: 41  IVQLSPGDGTVDIIRIAAGQKNAP-NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           ++QL   +    + ++       P  L   L D     +       +  L     +RV  
Sbjct: 45  VLQLCV-NRRCLVFQLYQASNEVPRELAEFLADAGVRFVGIGVDGGVRRLANECNLRVA- 102

Query: 100 VFCT----KIASRLTR-TYTNQHGLKDNLKELLGINISK--AQQSSDWSADDLSDEQLQY 152
             CT     +A+ +       + GLK     ++G  + K      S W    L+ EQ+ Y
Sbjct: 103 --CTVDLSDVAAAVLGWPELARAGLKSLALIVMGTRMEKAKDITMSRWGEPTLTWEQINY 160

Query: 153 AASDVVHLHALRLQF 167
              DV   + +  + 
Sbjct: 161 TCIDVYMSYEIGRRM 175


>gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
 gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
          Length = 902

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 77  KIFHYGRFDIA---VLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           KI H    D+    ++F   G+ +R + F T +A+ L       +G+     E LG NI 
Sbjct: 391 KIGH----DLKTAWIVFKKHGIELRGIAFDTMVAAYLLDPGKQNYGIDRVAAECLGENID 446


>gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group]
 gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
 gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group]
 gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 313

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 27/118 (22%)

Query: 66  LVGMLVDEKREKIFHYGR-FDIAVLFYTFGV----RVRP-VF-CTK-IASRLTRTYTN-- 115
           L   + D+    + H GR FD+  L Y F           +F  T  IA +L  +     
Sbjct: 189 LSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPIARQLIGSDGEKL 248

Query: 116 -QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               L +  +E   I ++ +                  A  DV+ L  +  + T +L+
Sbjct: 249 KSVSLDNL-REHYKIPLAGSAHR---------------AMQDVITLCYVLQKLTFELK 290


>gi|322501596|emb|CBZ36676.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 891

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 118 GLKDNLKELLGINISKAQQ--SSDWS--ADDLSDEQLQYAASDVV 158
            LK+    L G  + K      SDW      L+  Q++YAA D  
Sbjct: 214 SLKNMCSALTGRELGKDMAVVMSDWGGCHGALTPLQIEYAAQDAE 258


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101
           +  DG V++  I AG      L   +   +    FH   FD  VL Y       PV    
Sbjct: 37  AINDGPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 96

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            T + + L        G    L E+LG+   K
Sbjct: 97  DTMVQA-LAHGLPGSLG---ELCEVLGVPQDK 124


>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
 gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
          Length = 1437

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 35/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
            A         +  D ET GL    D    L  V++  G+                  II
Sbjct: 411 AAHRLLEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATII 470

Query: 55  RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRV------R 98
            +     +    AP++V ++ D      +    + H   FD+  L   +   +       
Sbjct: 471 ELTGITDDMLQDAPDVVDVIRDFREWIGDDIL-VAHNASFDMGFLNVAYKKLLEVDKAKN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           PV  T    R        H L    K+   I +++  ++
Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567


>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1437

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 35/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
            A         +  D ET GL    D    L  V++  G+                  II
Sbjct: 411 AAHRLLEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATII 470

Query: 55  RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRV------R 98
            +     +    AP++V ++ D      +    + H   FD+  L   +   +       
Sbjct: 471 ELTGITDDMLRDAPDVVDVIRDFREWIGDDIL-VAHNASFDMGFLNVAYKKLLEVEKAKN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           PV  T    R        H L    K+   I +++  ++
Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567


>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
          Length = 1437

 Score = 36.9 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 35/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
            A         +  D ET GL    D    L  V++  G+                  II
Sbjct: 411 AAHRLLEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATII 470

Query: 55  RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRV------R 98
            +     +    AP++V ++ D      +    + H   FD+  L   +   +       
Sbjct: 471 ELTGITDDMLQDAPDVVDVIRDFREWIGDDIL-VAHNASFDMGFLNVAYKKLLEVDKAKN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           PV  T    R        H L    K+   I +++  ++
Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567


>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 24/111 (21%)

Query: 64  PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR------VRPVFCT-KIASRLTRTYTNQ 116
                   ++  E I H  +FD+  +                +  T  IA R  +  +++
Sbjct: 81  SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR--KHPSSR 138

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           + L    K   GI I  + +S               A  D   L  + ++ 
Sbjct: 139 NDLNSLCKRY-GITI--SHRS------------KHGALLDSHLLSDVYIKM 174


>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
 gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1427

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLT 110
                ++  P  +  + D     + H   FD++ +      FG+    P+  T    +  
Sbjct: 474 DAPKIEEVLPKFIDFIED-SIL-VAHNANFDVSFIKKNCKDFGIHFNNPILDTIPLCKFL 531

Query: 111 RTYTNQHGLKDNLKELLGINI 131
                ++ L + + + LGI +
Sbjct: 532 YPELKRYKL-NVVAKHLGIPL 551


>gi|296805658|ref|XP_002843653.1| RNA exonuclease 1 [Arthroderma otae CBS 113480]
 gi|238844955|gb|EEQ34617.1| RNA exonuclease 1 [Arthroderma otae CBS 113480]
          Length = 737

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 41/166 (24%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDII----RIA 57
            V + +I         D  A+D E   T G      R+ ++     DG   +      + 
Sbjct: 342 TVPDNEIAEGSVTAGRDVFALDCEMCITEGGKSELTRISLM---SWDGERVLDEFVKPVT 398

Query: 58  AGQKNAPNLVGM-----------LVD--EKREKIF--------HYGRFDIAVLFYTFGVR 96
                     G+           L D  +K  KI         H    D+  L       
Sbjct: 399 PIIDYLTRFSGVTKEKLDPVTTTLSDIQQKLLKILTPRSILLGHSLNSDLNALK-----L 453

Query: 97  VRP-VFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSD 139
             P +  T  A+     R    +  LK   ++ LG  I K +   D
Sbjct: 454 THPFIVDT--AAIYPHPRGPPLKSSLKWLCQKYLGREIQKGEAGHD 497


>gi|146095489|ref|XP_001467593.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134071958|emb|CAM70655.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 891

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 118 GLKDNLKELLGINISKAQQ--SSDWS--ADDLSDEQLQYAASDVV 158
            LK+    L G  + K      SDW      L+  Q++YAA D  
Sbjct: 214 SLKNMCSALTGRELGKDMAVVMSDWGGCHGALTPLQIEYAAQDAE 258


>gi|32442307|gb|AAP82224.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGW 198
           DWS    + E L Y   D      L      +++    +D      +  M  A+ +  G+
Sbjct: 56  DWST--YTPEMLDYCIQDTQVTLRLYELLQRRMET--YADYIKLEMDMAMLMAQQEASGF 111

Query: 199 E 199
            
Sbjct: 112 R 112


>gi|32442309|gb|AAP82225.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 139 DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELDLLGW 198
           DWS    + E L Y   D      L      +++    +D      +  M  A+ +  G+
Sbjct: 56  DWST--YTPEMLDYCIQDTQVTLRLYELLQRRMET--YADYIKLEMDMAMLMAQQEASGF 111

Query: 199 E 199
            
Sbjct: 112 R 112


>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
 gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1437

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 35/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
            A         +  D ET GL    D    L  V++  G+                  II
Sbjct: 411 AAHRLLEEETYVVFDVETTGLSAVYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATII 470

Query: 55  RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVRV------R 98
            +     +    AP++V ++ D      +    + H   FD+  L   +   +       
Sbjct: 471 ELTGITDDMLQDAPDVVDVIRDFREWIGDDIL-VAHNASFDMGFLNVAYKKLLEVEKAKN 529

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           PV  T    R        H L    K+   I +++  ++
Sbjct: 530 PVIDTLELGRFLYPEFKNHRLNTLCKKF-DIELTQHHRA 567


>gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 253

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 61/201 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPDRLVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR--------VRPVFC 102
                 + P+   +  D        E + H   FD+  + Y F           +  V  
Sbjct: 68  TDEMLADKPDFKTIAQDFIEYIRGAELLIHNAPFDVGFMDYEFRKLGLDIKTTDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNSLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFTEKLQRLGRSDLATSC 183
           + L  T      G++ L    
Sbjct: 172 VYLSMTG-----GQTSLFDEE 187


>gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus coahuilensis m4-4]
          Length = 194

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 38/144 (26%)

Query: 18  RYVDAIAVDTETLGLMPRR-DRLCIVQLSP---GDGTVD-----------IIRIAAGQ-- 60
           +    + VD ET G  P+R DR+  +QLS      G +             I I   +  
Sbjct: 2   KTHRYVVVDLETTGNSPKRGDRI--IQLSACLIEHGEIVEQFTSFLNPNKTIPIFIEELT 59

Query: 61  -------KNAPNLVGM------LVDEKREKIFHYGRFDIAVLF---YTFGVRV--RPVFC 102
                   +APN   +      ++++    + H   FD++ L    +  G +    P+  
Sbjct: 60  GITQPMVDDAPNFEQIAPKLISMLNDSVF-VAHNVTFDLSFLQWELHAAGYKTFQGPILD 118

Query: 103 TKIASRLTRTYTNQHGLKDNLKEL 126
           T   +++    +N + L D  ++ 
Sbjct: 119 TVELAKICFPTSNSYKLGDLSEKF 142


>gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 203

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 19/102 (18%)

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
               + H+  FD+A L            CT+  S+L  +      L   + E  GI ++ 
Sbjct: 85  GTIVVAHHAPFDLAFLARY-QFEPDSFVCTRALSKLVES-DESASLAS-VAERRGIELTG 141

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             +                A +DV     +  Q   +   LG
Sbjct: 142 HHR----------------AMNDVEATVKVFQQMKAEADALG 167


>gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
 gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
          Length = 256

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 51/186 (27%), Gaps = 56/186 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFT 168
           + L  T
Sbjct: 172 VYLMMT 177


>gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
 gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parauberis NCFD 2020]
          Length = 1465

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSPGD---GTVD------IIR------- 55
           P +        +  D ET GL    +   ++Q++      G +       I         
Sbjct: 417 PVDLDLHESTYVVFDVETTGLSAMNND--LIQIAASKMYKGNILEQFDEFIDPGHPLSAF 474

Query: 56  ---IAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
              +     N    A  L  +LV+     +    + H   FD+  +             +
Sbjct: 475 TTELTGITDNHLVGAKPLHQVLVEFQAFCKDTVLVAHNASFDVGFMNANYARENLPKITQ 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    + + 
Sbjct: 535 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVALD 567


>gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group]
          Length = 901

 Score = 36.9 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 27/118 (22%)

Query: 66  LVGMLVDEKREKIFHYGR-FDIAVLFYTFGV----RVRP-VF-CTK-IASRLTRTYTN-- 115
           L   + D+    + H GR FD+  L Y F           +F  T  IA +L  +     
Sbjct: 777 LSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGDWLFVDTLPIARQLIGSDGEKL 836

Query: 116 -QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
               L +  +E   I ++ +                  A  DV+ L  +  + T +L+
Sbjct: 837 KSVSLDNL-REHYKIPLAGSAHR---------------AMQDVITLCYVLQKLTFELK 878


>gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 181

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 39/153 (25%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR-FDIAVLFYTFGVRV--RPVF 101
           S   G V +  +   +    +L   L D +   ++H G  FD  +L     + +    V 
Sbjct: 36  SYNHGPVKVWDVTQDKTMPTDLKAYLDDPEILTVWHNGGMFDTVILSKVLNIDLPLSRVH 95

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKA----------------------QQSSD 139
            T + + L        G   +L ++  +N  KA                      Q+++ 
Sbjct: 96  DTLVQA-LAHGLPGALG---SLCDIFNVNSDKAKDKEGKALIQLFCKPRPKNSKIQRAT- 150

Query: 140 WSADDLS--DEQLQ---YAASDVVHLHALRLQF 167
                L+  +E L+   YA SD++ +  +    
Sbjct: 151 ----ALTHFEEWLRFKTYAGSDILAMREIYQHL 179


>gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
 gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
          Length = 687

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 42/186 (22%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV---F 101
           +  DG V++  I AG      L   +   +    FH   FD  VL Y       PV    
Sbjct: 36  AINDGPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK---------------------AQQSSDW 140
            T + + L        G    L E+LG+   K                       + +  
Sbjct: 96  DTMVQA-LAHGLPGALG---ELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA-- 149

Query: 141 SADDLSDEQ---LQYAASDVVHLHALRLQFTE------KLQRLGRSDLATS---CCNFLM 188
           ++    +E    + YA  D+  +  +  +  +      +L    R         C +  +
Sbjct: 150 TSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVEL 209

Query: 189 DRAELD 194
            RA +D
Sbjct: 210 ARAAID 215


>gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 240

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 24/97 (24%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPV------FCTK-IASRLTRTYTNQHGLKDNLKELLGIN 130
           + H   FD+  L    G    P+        T  IA +  R   +   L    +      
Sbjct: 100 VIHNASFDMKFLNAELGWMGVPLIPMAQAIDTLAIARK--RFPGSPASLDALCRRF---G 154

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           I  + +             L  A  D   L  + L+ 
Sbjct: 155 IDNSNRV------------LHGALLDSEILAEVYLEL 179


>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1450

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRVR-PVFCTKIASRLT 110
                +   P  +    D     + H   FD   +       G+     +  T   +R  
Sbjct: 498 DAETIEILLPKFMEFCADS--VLVAHNAAFDTGFIKKNCRDLGIDFNYSIMDTVPLARFL 555

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
                +  L + + + LGI++    ++ D
Sbjct: 556 CPDLKKVKL-NLVAKHLGISLDNHHRAVD 583


>gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
 gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 297

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 38/140 (27%)

Query: 21  DAIAVDTETLGLMPRRDRLC------------------IV---QL--SPGDGTVDIIRIA 57
             +A+D ET      RD  C                  ++   Q+  SPG+  +  I + 
Sbjct: 2   SVVAIDFETANER--RDSACAVGLAWIEGGRVVRRETRLIRPPQMRFSPGNIRIHGI-LP 58

Query: 58  AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT-KIA 106
           A  ++AP    +  +          + H   FD+ VL  +      PV      CT +IA
Sbjct: 59  ADVRDAPTFPEVFAEFRPDLTGALLLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIA 118

Query: 107 SRLTRTYTNQHGLKDNLKEL 126
            R+       HGL      L
Sbjct: 119 RRIFPD-PAGHGLAKVAGRL 137


>gi|327305563|ref|XP_003237473.1| exonuclease [Trichophyton rubrum CBS 118892]
 gi|326460471|gb|EGD85924.1| exonuclease [Trichophyton rubrum CBS 118892]
          Length = 734

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 47/163 (28%), Gaps = 37/163 (22%)

Query: 6   VHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQ----------LSPGDGTVD 52
           V + DI         D  A+D E   T G      R+ +V           + P +  +D
Sbjct: 340 VPDRDIAEGSVTAGRDIFALDCEMCITEGGKSELTRISLVSWDGERVLDEFVKPENPIID 399

Query: 53  ------------IIRIAAGQKN-APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
                       +  +     +    L+ +L       I H    D+  L         P
Sbjct: 400 YLTRFSGVTKEKLDPVTTNLSDIQQKLLEILTPRSIL-IGHSLNSDLNALK-----LTHP 453

Query: 100 -VFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSD 139
            +  T  AS     R    +  LK   +  LG  I K     D
Sbjct: 454 FIIDT--ASIYPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHD 494


>gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512]
          Length = 241

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 54/178 (30%)

Query: 26  DTETLGLMPRRDRL----------------CI-VQLSPGDGTVDIIRIAA-GQKN----- 62
           DTET GL  R DR+                 + + ++PGD  V    +A  G  +     
Sbjct: 7   DTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLKD 66

Query: 63  -------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRL 109
                  A  ++    D K   I H   FD+  +   F       +    V  T   +R 
Sbjct: 67  KKAFAEVAEEILAFFGDAK--WIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARR 124

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                    L    +      +  + ++               A  D   L  + ++ 
Sbjct: 125 KHPMGPN-SLDALCRRY---GVDNSHRA------------KHGALLDSELLAEVYIEM 166


>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1410

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRT 112
            + ++  P  +  + D     + H   FD+  +       G+ V  PV  T   SR    
Sbjct: 462 PSIEEILPKFLDFIKD-SIL-VAHNANFDVTFIKTKARNLGMEVDNPVLDTLELSR--HM 517

Query: 113 YTNQHGLK-DNLKELLGINISKAQQSSD 139
           Y N    K D + + LG+++    ++ D
Sbjct: 518 YENLKNYKLDTVAQHLGVSLENHHRAVD 545


>gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
 gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
          Length = 241

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 54/178 (30%)

Query: 26  DTETLGLMPRRDRL----------------CI-VQLSPGDGTVDIIRIAA-GQKN----- 62
           DTET GL  R DR+                 + + ++PGD  V    +A  G  +     
Sbjct: 7   DTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLKD 66

Query: 63  -------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRL 109
                  A  ++    D K   I H   FD+  +   F       +    V  T   +R 
Sbjct: 67  KKAFAEVAEEILAFFGDAK--WIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARR 124

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                    L    +      +  + ++               A  D   L  + ++ 
Sbjct: 125 KHPMGPN-SLDALCRRY---GVDNSHRA------------KHGALLDSELLAEVYIEM 166


>gi|316995410|gb|ADU79191.1| DNA polymerase [Enterobacter phage EcP1]
          Length = 865

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 23/131 (17%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPG--DGTVDIIRIAAGQKNAPN----LVGMLVDEK 74
            A++ D E   L     RL  +  +    +G    +      ++A      L G   + K
Sbjct: 188 PALSADIEAWSLKFYEARLGTISFAWNQHEGIAFAVDFERNYEDALAIRLLLKGFFTEYK 247

Query: 75  REKIFHYGRFDIAV---------------LFYTFGVRVRPVFCTKIASRLTRTY--TNQH 117
            + ++H G +D+ V               L     V  +    TKI + L       N  
Sbjct: 248 GKMLWHNGSYDLTVIIYELWMNGLLDQKGLLTGLDVMTKNWHDTKIITYLATNSCAGNHL 307

Query: 118 GLKDNLKELLG 128
           GLK    E  G
Sbjct: 308 GLKAQSHEYAG 318


>gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Ba4 str. 657]
 gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Ba4 str. 657]
          Length = 1432

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASRLTRTYT 114
             K  P  +  + D     + H   FD++ +        +     V  T   SR      
Sbjct: 483 IDKILPRFIDFIGDS--VVVAHNADFDVSFINKNCKDLKIEFENSVMDTVTLSRFLFPEL 540

Query: 115 NQHGLKDNLKELLGINISKAQQSSD 139
            ++ L + + + LGI++    ++ D
Sbjct: 541 KRYKL-NVIAKHLGISLENHHRAVD 564


>gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 921

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 30/133 (22%)

Query: 22  AIAVDTETLGLMPRRDRL---CIVQLSPGDGTVD---IIRIAA----------GQKNA-- 63
            + +D ET GL P+ D +    +V++  G        ++R +           G  +A  
Sbjct: 5   FVVLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLDDADL 64

Query: 64  ----------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTY 113
                     P +   L +E    + H+  FD+A L    G R    + T   +RL    
Sbjct: 65  AERPDWSEVRPAVTAFLGNEPV--VGHHVHFDLAFLERHAGYRATQAYDTVDLARLVLPG 122

Query: 114 TNQHGLKDNLKEL 126
              + L+     L
Sbjct: 123 LPSYRLELLCAHL 135


>gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Bf]
 gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum Bf]
          Length = 1432

 Score = 36.9 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASRLTRTYT 114
             K  P  +  + D     + H   FD++ +        +     V  T   SR      
Sbjct: 483 IDKILPRFIDFIGDS--VVVAHNADFDVSFINKNCKDLKIEFENSVMDTVTLSRFLFPEL 540

Query: 115 NQHGLKDNLKELLGINISKAQQSSD 139
            ++ L + + + LGI++    ++ D
Sbjct: 541 KRYKL-NVIAKHLGISLENHHRAVD 564


>gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
 gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
          Length = 967

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 74/224 (33%), Gaps = 71/224 (31%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIR----------IAAGQK----------- 61
           + VD ET G  PR+    I+Q+    G V I            I  GQ            
Sbjct: 5   LVVDFETTGSHPRQGD-SIIQI----GAVAIDDGQITESFSTLIHPGQDIPPFITQLTGI 59

Query: 62  ------NAPNLVGMLVD-----EKREKIFHYGRFDIAVL--------FYTFGVRVRPVFC 102
                 +AP+L  +  D     + R  + H   FD+  L        +Y F      V  
Sbjct: 60  TNEMVADAPSLEEVFPDFLRLLDGRAFVAHNASFDLQFLQEALLSQGYYAFDGY---VLD 116

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS-SDWSADDLSDEQLQYAASDVVHLH 161
           T   SR+     N + L +   E L I      Q+ SD     L+  QL       +HL 
Sbjct: 117 TVELSRVLLPMQNSYRLGELASE-LEIEHDNPHQADSD----ALATAQLF------LHLL 165

Query: 162 ALRLQF-------TEKLQRLGRSDLA----TSCCNFLMDRAELD 194
            +  +         + L    RSD+           L++  ELD
Sbjct: 166 DILKKLPLVTIQRLQMLVSSFRSDIEVLLRQIEMEKLIELPELD 209


>gi|154271314|ref|XP_001536510.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150409180|gb|EDN04630.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 805

 Score = 36.9 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 46/158 (29%), Gaps = 39/158 (24%)

Query: 8   EGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ---- 60
           E DI         + +++D E   T G   +  R+ +V     DG V +  +        
Sbjct: 420 ENDIQLGSITAGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDDLVKPDKPII 476

Query: 61  ----------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
                                      L+ +L       I H    D++ L         
Sbjct: 477 DYLTRFSGITKEMLEPVTTRLPDVQQKLLTLLTPRTIL-IGHSLNSDLSALK-----LTH 530

Query: 99  P-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
           P +  T I     R    +  LK   ++ LG  I K Q
Sbjct: 531 PFIVDTSIIYPHPRGPPLKSSLKWLSQKYLGKEIQKGQ 568


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
          Length = 880

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 16/139 (11%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKD 121
           A  L  +L  E  EK+F   +     L    G+ V+ + F   +A  L +       L D
Sbjct: 366 ADALKEILESETIEKLFINAKESSLALLCA-GIEVKNISFEPLLAYYLLQ---PSSSLPD 421

Query: 122 NLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLAT 181
             +E+    +    Q       + S +Q+   A + + L  LR    +KL+     DL  
Sbjct: 422 L-EEIFSRELDIGMQ-------EFSQDQIL--AVETIKLFKLRDILIKKLKDDSLYDLFK 471

Query: 182 S-CCNFLMDRAELDLLGWE 199
           +     +   A+++  G +
Sbjct: 472 NMELPLIKVLAQMEYNGVK 490


>gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 1470

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 73  EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +    + H   FD+  +      +      +PV  T   +R       +HGL    K  
Sbjct: 507 QDTVLVAHNATFDVGFMNANYERHDLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565


>gi|240273466|gb|EER36986.1| RNA exonuclease [Ajellomyces capsulatus H143]
          Length = 598

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 47/161 (29%), Gaps = 39/161 (24%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ- 60
            V + DI         + +++D E   T G   +  R+ +V     DG V +  +     
Sbjct: 192 TVLKNDIQLGSITAGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDDLVKPDK 248

Query: 61  -------------------------KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV 95
                                         L+ +L       I H    D++ L      
Sbjct: 249 PIIDYLTRFSGITKEMLEPVTTRLPDVQQKLLTLLTPRTIL-IGHSLNSDLSALK----- 302

Query: 96  RVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
              P +  T I     R    +  LK   ++ LG  I K Q
Sbjct: 303 LTHPFIVDTSIIYPHPRGPPLKSSLKWLSQKYLGKEIQKGQ 343


>gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 1466

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +      +   +  +PV  T   +R       +HGL    K    +++ 
Sbjct: 510 VAHNASFDVGFMNANYERHHLPLIKQPVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 568


>gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
 gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
          Length = 894

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 3   TIRVHEGDIPAECA--ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ 60
           T+     ++ +  A  A    A+AVD   +      D   +  +   D  V +   A   
Sbjct: 312 TVPTTADELASFLAGGAGQRSALAVDL--VPGRIGEDAAGL-AILRADAAVYLDLTALDA 368

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGL 119
                L   L D +  K+ H  +  +  L    G+ +  V   T I+  L +     + L
Sbjct: 369 DTENALATWLRDPESPKVLHGFKAALKALTAR-GLELEGVVDDTSISGYLIQPDRRTYEL 427

Query: 120 KDNLKELLGINI 131
            +  +  L + +
Sbjct: 428 AELAQHHLNVGM 439


>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
 gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1390

 Score = 36.5 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 22  AIAVDTETLGLMPRRDRLCIV-QLSPGDGTVD-----IIRIAAGQKNAPNLVGMLVD--- 72
            + +D ET GL PR D +  +  +   DG V       +R     K + N+ G+  D   
Sbjct: 383 YVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDEFHTFVRPNKLNKKSLNITGITEDMLK 442

Query: 73  --EKREKIF--------------HYGRFDIAVLFYTF---GVRVR-PVFCTK-IASRLTR 111
                 ++               H   FD+  L       G+    P   T  ++  L R
Sbjct: 443 DAPDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNPPYIDTLRLSQALLR 502

Query: 112 TYTNQHGLKDNLKEL 126
                  L   +   
Sbjct: 503 NKIKSFSLDKLVDHF 517


>gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 326

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 6/67 (8%)

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-----CTKIASRLTRTYTNQHGL 119
                L       + H   FDI  L+  F   +   F      T   S+L       H L
Sbjct: 104 EFDDFLKSGDIL-VAHNAHFDINFLYDNFMCYLNKPFSFDFVDTMRLSKLINQELAHHRL 162

Query: 120 KDNLKEL 126
           KD   + 
Sbjct: 163 KDLCNQY 169


>gi|302852450|ref|XP_002957745.1| hypothetical protein VOLCADRAFT_98869 [Volvox carteri f.
           nagariensis]
 gi|300256921|gb|EFJ41177.1| hypothetical protein VOLCADRAFT_98869 [Volvox carteri f.
           nagariensis]
          Length = 909

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 5/36 (13%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDI 53
                I  DTE +G     D+L +VQL  GD  + +
Sbjct: 161 EPPKVIGFDTEFIG-----DQLALVQLCCGDRALLV 191


>gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159]
 gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159]
          Length = 1465

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 73  EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +    + H   FD+  +      +      +PV  T   +R       +HGL    K  
Sbjct: 502 QDTVLVAHNATFDVGFMNANYERHDLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 560


>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 774

 Score = 36.5 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTR 111
           I  +               + +  K++H   FD  V++   G+ V+ +   T   +RL  
Sbjct: 73  IDNLDDAAGILQEFKAWFENPRFLKVWHNYGFDRHVMWNE-GIDVQGLGGDTMHMARLQD 131

Query: 112 T------YTNQHGLKDNLKELL 127
           T          + L+    +LL
Sbjct: 132 TCRSKMAKGGGYSLEALTADLL 153


>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 1441

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L         G    PV  T   +R        H L    K+   + ++
Sbjct: 508 VAHNASFDMGFLNVGYKKMGIGKASNPVIDTLELARFLYPDMKNHRLNTLAKKF-DVELT 566

Query: 133 KAQQS 137
           +  ++
Sbjct: 567 QHHRA 571


>gi|168028955|ref|XP_001766992.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681734|gb|EDQ68158.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 325

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 18  RYVDAIAVDTETLGLMPRR-----DRLCIVQLSPGDGTVDI---IRIAAGQKN------- 62
           R   A+A+D E +G           R+C+V     D  V +   ++      +       
Sbjct: 116 RQYGAVALDCEMVGGGSDGSINICARVCLV---DEDENVLLNTYVQPLLPVTDYRYEITG 172

Query: 63  --------APNL-------VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
                   AP+          +L D     I H  R D+A L          +  T    
Sbjct: 173 IKPSDFNGAPSFKRVRYIVKRILED-GPLLIGHDLRHDLACLR--LDHSPELIRDTATYQ 229

Query: 108 RLTRTYTNQHGLKDNLKELLGINI 131
              +T    H L+   +  LG  I
Sbjct: 230 LFVKTSGVSHKLRFLTEVFLGYKI 253


>gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 895

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FC 102
           L+    TV  +    G  +   L   L    R+  FH        L    G  V  + F 
Sbjct: 364 LASATETVY-VPWEDGSHHGAALTEWLASPARKCFFHAKPQ-FKTLLRA-GFAVDGLAFD 420

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINI 131
           T+IAS L +  +    L + + E+LG  +
Sbjct: 421 TRIASWLVKPGSAPQSLAEQVWEVLGETL 449


>gi|226288322|gb|EEH43834.1| RNA exonuclease [Paracoccidioides brasiliensis Pb18]
          Length = 734

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 51/167 (30%), Gaps = 37/167 (22%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDII---- 54
           + + + E DI         + +++D E   T G      R+ +V     DG V +     
Sbjct: 326 SDVEIPEKDIQKGSITAGREILSLDCEMCITEGGSSELTRVSLV---SWDGEVVLDELVK 382

Query: 55  ---RIAAGQKNAPNLVGMLVDE------------------KREKIFHYGRFDIAVLFYTF 93
               I         +   ++D                   K   I H    D++ L    
Sbjct: 383 PEKPIIDYLTRFSGITQEMLDPVTTRLANVQQKLLLLLTPKTILIGHSLNSDLSALK--- 439

Query: 94  GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
                P +  T I     R    +  LK   ++ LG+ I K Q   D
Sbjct: 440 --LTHPFIIDTSIIYPHPRGTPLKLSLKWLSQKYLGMEIQKGQTGHD 484


>gi|225683202|gb|EEH21486.1| RNA exonuclease [Paracoccidioides brasiliensis Pb03]
          Length = 734

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 51/167 (30%), Gaps = 37/167 (22%)

Query: 2   TTIRVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDII---- 54
           + + + E DI         + +++D E   T G      R+ +V     DG V +     
Sbjct: 326 SDVEIPEKDIQKGSITAGREILSLDCEMCITEGGSSELTRVSLV---SWDGEVVLDELVK 382

Query: 55  ---RIAAGQKNAPNLVGMLVDE------------------KREKIFHYGRFDIAVLFYTF 93
               I         +   ++D                   K   I H    D++ L    
Sbjct: 383 PEKPIIDYLTRFSGITQEMLDPVTTRLANVQQKLLLLLTPKTILIGHSLNSDLSALK--- 439

Query: 94  GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
                P +  T I     R    +  LK   ++ LG+ I K Q   D
Sbjct: 440 --LTHPFIIDTSIIYPHPRGTPLKLSLKWLSQKYLGMEIQKGQTGHD 484


>gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 729

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 78  IFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + H   FD+  +       GVR   PV  T + S     +T  H L+      LG+ ++ 
Sbjct: 621 VAHNAAFDMKFIRLKERRCGVRFDNPVLDTLLLSVFLHDHTADHTLEAIAAR-LGVEVTA 679

Query: 134 AQQSSDWS 141
              +  W 
Sbjct: 680 QHTA--WG 685


>gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1]
 gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1]
          Length = 908

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 8/92 (8%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPV 100
           ++ G     I        +   L   L D    K  H  +    D+       G  +  V
Sbjct: 364 VASGGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAKLAIHDL----QGRGWTLAGV 419

Query: 101 F-CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
              T +A+ L R       L D     L   +
Sbjct: 420 TSDTALAAYLVRPGQRSFALDDLSLRYLKREL 451


>gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 735

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 41/135 (30%), Gaps = 23/135 (17%)

Query: 54  IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVLF----YTFGVRVRPVFCTKIAS 107
             +  GQ N   ++  L D       + H   FD+  L      T     +PV  T + S
Sbjct: 604 DDMVRGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQPVLDTLLLS 663

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +       H L    +  LGI I                     A  D      + L+ 
Sbjct: 664 GVLHPNQESHQLDSIAER-LGIGIEDRHN----------------ALGDACATAEVFLKM 706

Query: 168 TEKLQRLGRSDLATS 182
              L ++G + L  +
Sbjct: 707 LPLLAQMGITTLRQA 721


>gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72]
 gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72]
          Length = 918

 Score = 36.5 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 13/125 (10%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NL 66
                 +A DTET  L P   RL  +  +   G    + +A    + P           L
Sbjct: 337 LEATPLVAFDTETTSLDPMSARLVGMSFALAQGEAAYLPLAHRGTDVPQQLPLDEVLARL 396

Query: 67  VGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKE 125
              L  ++  K+    ++D  VL    G+R+  +   T + S +  +    H +    K 
Sbjct: 397 KPWLESDRHAKLGQNLKYDAHVLLNH-GIRLGGITHDTLLESYVLES-DKPHDMDSLAKR 454

Query: 126 LLGIN 130
            LG+ 
Sbjct: 455 HLGLT 459


>gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
 gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
          Length = 202

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 38/145 (26%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLS------------------------------PGDGT 50
           + + +D ET GL P  D++  +Q+                                G   
Sbjct: 41  NYVVLDFETTGLRPGNDKI--IQIGAVKYVNHEREETMYLMVNPQRSISNTITRITGITN 98

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP---VFCTKIAS 107
            D+      +  A +L+  + D     I H   FD+  L+    +   P   V  T   +
Sbjct: 99  KDVENAPVIEDIAHDLITFIGDLPI--IAHNAPFDMGFLYALEDITPIPEYTVIDTVKLA 156

Query: 108 RLTRTYTNQHGLKDNLKELLGINIS 132
           R   T T  H L       L +   
Sbjct: 157 RKAITQTPNHKLTTLTA-FLKLEHD 180


>gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J]
 gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J]
          Length = 1465

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 5/58 (8%)

Query: 74  KREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
               + H   FDI  +             +PV  T   +R       +HGL    K  
Sbjct: 505 DTVLVAHNASFDIGFMNANYERNGLPQITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 562


>gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 729

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 23/123 (18%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLTRT 112
                  P       D     + H   FD+  L       GVR  +PV  T + S +   
Sbjct: 605 PTIDTVLPQFQTFCADT--VLVGHNAAFDMRFLQLKEKQTGVRFDQPVLDTLLLSAVLHP 662

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
             N H L+   +  LG+++                     A  D +    + L+    L 
Sbjct: 663 NQNSHRLEAIAER-LGVSVFGRHT----------------ALGDAMVTGEVFLKMLPLLA 705

Query: 173 RLG 175
            +G
Sbjct: 706 EMG 708


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%)

Query: 29  TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNA-PNLVGMLVDEKREKIFHYGRFDIA 87
                  + ++  + ++  +    I             L     D +  K+    + ++ 
Sbjct: 328 FASTKLYQQKVEGLTVASDEEACYIDTSDLDLAELIDKLQPYFEDYELNKLSLNTKENLI 387

Query: 88  VLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLS 146
            L    GV V+ + F   +A  L R    +  L+  L + L + + K +  ++      +
Sbjct: 388 YLKEQ-GVEVKGISFDPLLADYLLRPSAKEQDLESILTDQLQMELEKTESEAE------T 440

Query: 147 DEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
           + Q       V  L  L+ + T+KL   G  +L        +   A+++L G
Sbjct: 441 EVQQ------VRILFKLQDKLTDKLADKGLMELFIDVELPLIPILAQMELNG 486


>gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
 gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
          Length = 375

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 26/146 (17%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR 98
           +Q   G     +         AP L   L  + +  + H   FD   L   F   G+   
Sbjct: 62  IQQLTGISDAMVRDAPTFASLAPALFERL--DGKLFVAHNASFDRGFLRAEFERAGLTFN 119

Query: 99  P-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           P V CT   SR      ++HGL   ++   G+  +   +                A +D 
Sbjct: 120 PDVLCTVRLSRALFPRESRHGLDALIERH-GLVPAARHR----------------ALADA 162

Query: 158 VHLHALRLQFTEK--LQRLGRSDLAT 181
             L     Q  E   L+RL R  +A 
Sbjct: 163 DLLWQFWRQLHEIVPLERL-RDQIAR 187


>gi|349620|gb|AAA17435.1| DNA polymerase III epsilon subunit [Buchnera aphidicola]
          Length = 179

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 17/80 (21%)

Query: 62  NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR---------PVFCT-KIA 106
           + P+   +  D     +  E I H   FD+  +   F +  +          +  T KIA
Sbjct: 74  DKPSFKDIAKDFFNYIKNSELIIHNASFDVGFINQEFSMLTKKIQDISNFCNIIDTLKIA 133

Query: 107 SRLTRTYTNQHGLKDNLKEL 126
            +L      ++ L       
Sbjct: 134 RKL--FPGKKNTLDALCMRY 151


>gi|21672521|ref|NP_660588.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|21623143|gb|AAM67799.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 234

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 17/80 (21%)

Query: 62  NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR---------PVFCT-KIA 106
           + P+   +  D     +  E I H   FD+  +   F +  +          +  T KIA
Sbjct: 75  DKPSFKDIAKDFFNYIKNSELIIHNASFDVGFINQEFSMLTKKIQDISNFCNIIDTLKIA 134

Query: 107 SRLTRTYTNQHGLKDNLKEL 126
            +L      ++ L       
Sbjct: 135 RKL--FPGKKNTLDALCMRY 152


>gi|2833216|sp|Q08880|DPO3E_BUCAP RecName: Full=DNA polymerase III subunit epsilon
 gi|1794288|gb|AAC44791.1| DNA polymerase III epsilon chain [Buchnera aphidicola]
          Length = 233

 Score = 36.5 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 17/80 (21%)

Query: 62  NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVR---------PVFCT-KIA 106
           + P+   +  D     +  E I H   FD+  +   F +  +          +  T KIA
Sbjct: 74  DKPSFKDIAKDFFNYIKNSELIIHNASFDVGFINQEFSMLTKKIQDISNFCNIIDTLKIA 133

Query: 107 SRLTRTYTNQHGLKDNLKEL 126
            +L      ++ L       
Sbjct: 134 RKL--FPGKKNTLDALCMRY 151


>gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
 gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
          Length = 884

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 28  ETLGLMPRR-DRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYG-RFD 85
           ET G  P   D + ++  + G      + +      A  +   L D +R+K  H   R D
Sbjct: 327 ETHGDNPHHADIVGLIFAATGQQFFMTLDVLQ-SDAATPIRAWLADPERKKRGHDLHRTD 385

Query: 86  IAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKEL 126
           +A   +  G+      F  ++A  L         L     + 
Sbjct: 386 LA--LHWHGIEFAGAEFDVQLAGYLLDPTDANQTLSGLAAKY 425


>gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771]
          Length = 238

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 51/178 (28%), Gaps = 54/178 (30%)

Query: 26  DTETLGLMPRRDRL----------------CI-VQLSPGDGTVDIIRIAA-GQKN----- 62
           DTET GL  R DR+                 + + ++PGD  V    +A  G  +     
Sbjct: 7   DTETTGLDNRMDRIIEIGGIELFNHFPTGNTLHIYINPGDQKVHPDALAVHGITDEFLKD 66

Query: 63  -------APNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRL 109
                  A  ++    D K   I H   FD+  +   F       +    V  T   +R 
Sbjct: 67  KKAFAEVAEEILAFFGDAK--WIAHNATFDMGFINAEFARIGLPPILPERVVDTLSMARR 124

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                    L    +      +  + ++               A  D   L  + ++ 
Sbjct: 125 KNPMGPN-SLDALCRRY---GVDNSHRA------------KHGALLDSELLAEVYIEM 166


>gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 423

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 33  MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89
            P++     +Q   G     +         AP L   L    +  + H   FD   L   
Sbjct: 92  DPQQPIPSFIQQLTGITNAMVRGAPTFDAIAPELFARL--NGKLFVAHNASFDRGFLRGE 149

Query: 90  FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           F   G+   P V CT   SR       +HGL   ++  
Sbjct: 150 FRRAGISFDPDVLCTVRLSRALFPSEKRHGLDALVERH 187


>gi|303278438|ref|XP_003058512.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459672|gb|EEH56967.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 605

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 65  NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ--HGLKDN 122
            LV ++  E    + H    D+  L +       PV  T  A         +   GL D 
Sbjct: 235 ELVSIVTAETIL-VGHGLVHDLRALKFHH----APVIDT--AMLFEYENLPRSTPGLADL 287

Query: 123 LKELLGINISKA 134
            K LLG+ + K 
Sbjct: 288 CKRLLGVEMRKG 299


>gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B]
 gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum B str. Eklund 17B]
          Length = 1452

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 7/81 (8%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRVR-PVFCTKIASRLTRTYTNQHG 118
            P  +    D     + H   FD   +        +R   P+  T    R       +  
Sbjct: 508 LPKFMEFCEDTVI--VAHNAAFDTGFIKKNCRDLNIRFDIPILDTVTLCRFLYPELKKVK 565

Query: 119 LKDNLKELLGINISKAQQSSD 139
           L + + + LGI++    ++ D
Sbjct: 566 L-NIVAKFLGISLENHHRAVD 585


>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
 gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
          Length = 1450

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53
            A  A      +  D ET GL    D    L  V++  G      D  +D          
Sbjct: 415 DAHEALNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474

Query: 54  ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100
                   +  G K+   ++ M +   +    + H   FD+  L   +  +G+     PV
Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   +R       + GL    K+  G+++ +  ++
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570


>gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
 gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
          Length = 666

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 25  VDTETLGLMPRRD----RLCIVQLSPGDGTVDIIRIAAG----QKNAPNLVGMLVDEKRE 76
           VD  T GL    +     + ++  +  DG V++I +  G    Q+    +  +L  +   
Sbjct: 16  VDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVGVRRLLESQNYI 75

Query: 77  KIFHYGRFDIAVLFYTFGVRVRP--VFCTKI 105
           K  H   F++  L     + +RP    CT +
Sbjct: 76  KCAHNAHFEMECLKRALHIIIRPSRWECTMV 106


>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
 gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
          Length = 907

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 5   RVHEGDIPAECAAR--YVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN 62
           ++  G+      AR    D + +DTET GL     RL  +  +        + +A     
Sbjct: 312 KILTGEQLDAWLARLLAADLVCLDTETTGLDVMDARLVGMSFAITPHEAAYLPLAHRYPG 371

Query: 63  APN----------LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTR 111
            P+          L   L  E+ +K+    ++D  +     G+ +R +   T + S +  
Sbjct: 372 VPDQLDLDATLARLRPWLESEQHKKLGQNLKYDKHIFANH-GIALRGISDDTLLESYVLE 430

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQ------YAASDVVHLHALRL 165
           ++   H +       LG+     ++ +   A  +  +Q+       YAA D      L  
Sbjct: 431 SH-KSHDMDSLALRHLGVKTISYEEVAGRGAKQICFDQVDLDIATRYAAEDADITLQLHQ 489

Query: 166 QFTEKL 171
               ++
Sbjct: 490 SLAPEI 495


>gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
 gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
          Length = 909

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 43/149 (28%), Gaps = 36/149 (24%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101
           S GDG   I       ++   L   L D    K  H  +    D+       G  +  V 
Sbjct: 367 SDGDGR-YIDTTRLDPEDEKALASWLADPDAPKALHEAKLAMHDL----QGRGWTLAGVT 421

Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASD---- 156
             T +A+ L R       L D     L   +      +D      + EQ Q +  D    
Sbjct: 422 SDTALAAYLVRPGQRSFALDDLSLRYLKREL-----RAD------NPEQQQLSLLDDSDA 470

Query: 157 -------VVHLH-----ALRLQFTEKLQR 173
                   + L       L     E+L R
Sbjct: 471 VDDQAVQTLLLRAGAVVDLADALDEELAR 499


>gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 382

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 29/141 (20%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASRLTRTYTNQHG 118
           AP L   L    +  + H   FD   L   F   G+   P V CT   SR       +HG
Sbjct: 83  APALFERL--NGKLFVAHNASFDRGFLRSEFRRAGIAFDPDVLCTVRLSRALFPGEKRHG 140

Query: 119 LKDNLKELLGINISKAQQSSD-------WSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
           L   ++    +   + +  +D       W                   L  L      ++
Sbjct: 141 LDALVERHALVPSDRHRALADADLIWQFWQRLP--------------TLVPL-DALRAQI 185

Query: 172 QR-LGRSDLATSCCNFLMDRA 191
           +R   R  LA      L+D A
Sbjct: 186 ERTTRRYRLAGDITEDLLDTA 206


>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1450

 Score = 36.5 bits (84), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53
            A  A      +  D ET GL    D    L  V++  G      D  +D          
Sbjct: 415 DAHEALNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474

Query: 54  ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100
                   +  G K+   ++ M +   +    + H   FD+  L   +  +G+     PV
Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPV 534

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   +R       + GL    K+  G+++ +  ++
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570


>gi|322494033|emb|CBZ29329.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 890

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 118 GLKDNLKELLGINISKAQQ--SSDWS--ADDLSDEQLQYAASD 156
            LK+    L G  + K      SDW      L+  Q++YAA D
Sbjct: 214 SLKNMCSALTGRELGKDMAVVMSDWGGCHGALTPLQIEYAAQD 256


>gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 1475

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 7/69 (10%)

Query: 76  EKIFHYGRFDIAVLFYTFGVR-----VRPVFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
             + H  +FD + L Y            PV  T   +R    +   H L    KE L + 
Sbjct: 534 IVVAHNAQFDYSFLRYHRQKYLGEEFANPVLDTLTLARAVLPHMRSHSLAALTKE-LQVP 592

Query: 131 ISKAQQSSD 139
           +      +D
Sbjct: 593 LV-DHHRAD 600


>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
          Length = 1437

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 8/86 (9%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTR 111
                        + D     + H   FD+  L   F     G    PV  T    RL  
Sbjct: 485 PEVGDVLKQFSEWMQD-DIL-VAHNASFDMGFLNIGFQRIGLGKAKNPVIDTLELGRLLF 542

Query: 112 TYTNQHGLKDNLKELLGINISKAQQS 137
                H L    K+   I +++  ++
Sbjct: 543 PSLKNHRLNTLCKKF-DIELTQHHRA 567


>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1437

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 44/156 (28%), Gaps = 40/156 (25%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAGQKNAPNLVGM---- 69
               + +  D ET GL    D+  +++L+     DG V I +          L  +    
Sbjct: 409 LADAEYVVFDVETTGLSAVYDK--VIELAAVKMKDGQV-IDQFEEMIDPGFPLSELTINL 465

Query: 70  -----------------------LVDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVF 101
                                    D     + H   FD+  L      +       PV 
Sbjct: 466 THITDDMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADIDNPVI 524

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
            T   SR+       H L    K+   +++    ++
Sbjct: 525 DTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 559


>gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 882

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 16/85 (18%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--------CTKIAS 107
           +   + +A  L   L D  R K+ H  +          G  +R +          T + +
Sbjct: 352 VRQWKDDAEALGAFLADPGRPKVLHGAK--------GAGHALRNIGVELDGVRRDTLLQA 403

Query: 108 RLTRTYTNQHGLKDNLKELLGINIS 132
            L       + L D +   LG  I 
Sbjct: 404 YLLHPDQRVYDLDDLVIRYLGREIE 428


>gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
 gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
          Length = 906

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 44  LSPGDGTVDIIRIAA-GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF- 101
           ++   G    +  A  G+ +   L   L D  R K  H  +  +  L    G+ +  V  
Sbjct: 364 VATASGAAVYVEPAELGEADERALAEWLADPHRPKAIHDAKGPMLALAAR-GMTLAGVTS 422

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            T +A+ L         L D +   L   +
Sbjct: 423 DTALAAYLALPGQRTFDLGDLVLRYLHKEL 452


>gi|20089704|ref|NP_615779.1| hypothetical protein MA0820 [Methanosarcina acetivorans C2A]
 gi|19914634|gb|AAM04259.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 249

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 19  YVDAIAV-DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNL--VGMLVDEKR 75
           + D++A  D ET GL P RDR+ +V +  G+ +   +R               +LV    
Sbjct: 83  FSDSVAFFDIETTGLSPARDRITVVGIYDGNESKMYVRGINLDDIVEEFSKYRLLVS--- 139

Query: 76  EKIFHYGRFDIAVLFYTF 93
              F+  RFDI  +   F
Sbjct: 140 ---FNGARFDIPFIKSEF 154


>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
 gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 1444

 Score = 36.5 bits (84), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 44/156 (28%), Gaps = 40/156 (25%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVDIIRIAAGQKNAPNLVGM---- 69
               + +  D ET GL    D+  +++L+     DG V I +          L  +    
Sbjct: 416 LADAEYVVFDVETTGLSAVYDK--VIELAAVKMKDGQV-IDQFEEMIDPGFPLSELTINL 472

Query: 70  -----------------------LVDEKREKIFHYGRFDIAVL-----FYTFGVRVRPVF 101
                                    D     + H   FD+  L      +       PV 
Sbjct: 473 THITDDMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADIDNPVI 531

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
            T   SR+       H L    K+   +++    ++
Sbjct: 532 DTLELSRMLHPERKNHKLDTLAKQY-KVSLEHHHRA 566


>gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 228

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 27/117 (23%)

Query: 62  NAPNLVGMLVD-----EKREKIFHYGRFDIAVL---FYTFGVRVRPV---FCTKIASRLT 110
           + P    ++ D          + H   FD+  +       G +  P+     T +A    
Sbjct: 66  DKPVFAEIVADFMDFIGDAILVIHNAEFDMRFINAELSRLGFQPLPMSRSIDT-VAMARK 124

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           +    Q  L    +      I    +S               A  D   L  + LQ 
Sbjct: 125 KFPGAQANLDALCRRF---EIDNTHRS------------FHGALLDSELLAEVYLQL 166


>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
 gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
          Length = 1452

 Score = 36.5 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGD-----------------GTV 51
            A  A      +  D ET GL    D    L  V++  G+                  TV
Sbjct: 417 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 476

Query: 52  DIIRIAAGQ-----KNAPNLVGMLV-DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100
           D+  I  G           L   L   +    + H   FD+  L   +  +G+     PV
Sbjct: 477 DLTGITDGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPV 536

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   +R       + GL    K+  G+++ +  ++
Sbjct: 537 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 572


>gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
 gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
          Length = 256

 Score = 36.1 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 56/186 (30%)

Query: 23  IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G   L    +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFT 168
           + L  T
Sbjct: 172 VYLMMT 177


>gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1]
 gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit
           family [Aromatoleum aromaticum EbN1]
          Length = 478

 Score = 36.1 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 62  NAPNLVGMLV---DEKREKIF--HYGRFD---IAVLFYTFGVRVRP-VFCTKIASRLTRT 112
           +AP    +     D   E++F  H  RFD   I   F   GV  RP V CT   SR    
Sbjct: 78  DAPTFAELAETVFDRLHERVFVAHNARFDHGFIRAAFRRLGVDFRPKVLCTVRLSRRLYP 137

Query: 113 YTNQHGLKDNLKELLGINISKAQQS 137
              +H L   +    G+ +    ++
Sbjct: 138 QERRHNLDALIARH-GLEVEAQHRA 161


>gi|158345168|ref|YP_001522875.1| hypothetical protein PPLKA1_gp34 [Enterobacteria phage LKA1]
 gi|114796464|emb|CAK25002.1| hypothetical protein [Pseudomonas phage LKA1]
          Length = 343

 Score = 36.1 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 17/128 (13%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYG-RFDIAVLFYTFGV------RVRPVFCTKIASR 108
           IA   K    L  +L +E    +   G RFD+  +   F +      R   V  T + ++
Sbjct: 147 IADDSKLVAELYELL-NEADLVVAQNGKRFDLPKIQARFVMAGYKPPRPFRVIDTMLMAK 205

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD---W-----SADDLSDEQLQYAASDVVHL 160
               +T+   L+    +L      K ++      W        +  +E   Y   DV+ L
Sbjct: 206 QQFGFTSNK-LEWMTDKLCTTKKRKHEKFPGMELWNQCLAGNPEAWEEMRLYNIDDVISL 264

Query: 161 HALRLQFT 168
             L L   
Sbjct: 265 EELYLILR 272


>gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11]
 gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11]
 gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1]
          Length = 687

 Score = 36.1 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF--- 101
           +  D  V++  I AG      L   +   +    FH   FD  VL Y       PV    
Sbjct: 36  AINDEPVNVWDITAGGGIPHGLYEAIAAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWR 95

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
            T + + L        G    L E+LG+   K
Sbjct: 96  DTMVQA-LAHGLPGSLG---ELCEVLGVPQDK 123


>gi|320586750|gb|EFW99413.1| RNA exonuclease 4 [Grosmannia clavigera kw1407]
          Length = 721

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 7/74 (9%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLK 124
           LV +L  +    + H    D+  L         P V  T IA         +H L+    
Sbjct: 413 LVDLLDAQSIL-VGHSLDSDMRALQ-----LTHPFVVDTSIAFPHPAGPPKKHALRWLSA 466

Query: 125 ELLGINISKAQQSS 138
           + L   I K   ++
Sbjct: 467 KYLQREIQKGHGTA 480


>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 1480

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 23/129 (17%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVR----PVFCTKIASRLTRT 112
              +   P  +    D     + H   FD   +        +     +  T   +RL   
Sbjct: 519 PFIEDILPKFLDFCEDYII--VAHNAGFDTGFIRENAKKINKEYNPSIIDTVAMARLLLP 576

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
             N+  L   + + L I++    +                A +D      + ++F ++L+
Sbjct: 577 ELNRFKLDT-VCKALNISLEGHHR----------------AVNDAEATAQIWVEFIKRLK 619

Query: 173 RLGRSDLAT 181
             G S L+ 
Sbjct: 620 DKGISKLSE 628


>gi|22328601|ref|NP_680682.1| 3'-5' exonuclease-related [Arabidopsis thaliana]
 gi|332657941|gb|AEE83341.1| 3'-5' exonuclease-related protein [Arabidopsis thaliana]
          Length = 263

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 139 DWSADDLSDEQLQYAASDV---VHLHALRLQF 167
           +W    LS +QLQYAA+D     HLH +    
Sbjct: 225 NWEVHPLSKQQLQYAATDAYASWHLHQVLKDL 256


>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
          Length = 1459

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 78  IFHYGRFDIAVLFYTF--GVRVRP---VFCTKIASRLTRTYTNQHGLKDNLKELLGI 129
           I H  +FD   L   F       P   V  T IASR+      +H L+D +   LG+
Sbjct: 509 IAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIASRIGFPNYKRHKLED-VASRLGV 564


>gi|266625917|ref|ZP_06118852.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
 gi|288862187|gb|EFC94485.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
          Length = 333

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 21/102 (20%)

Query: 78  IFHYGRFDIAVLFYT---FGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + H   FD++ +       G+   P V  T   +R      N+  L   + + L I+++ 
Sbjct: 3   VAHNASFDVSFINRNAEILGLPFEPTVLDTVTLARFLLPNLNRFKLDT-VAKALNISLAN 61

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             +                A  D      + ++F + L+  G
Sbjct: 62  HHR----------------AVDDAGCTAEIFVKFVQMLRERG 87


>gi|307153762|ref|YP_003889146.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
 gi|306983990|gb|ADN15871.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7822]
          Length = 817

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 33/167 (19%)

Query: 21  DAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKN-------APNLVGMLVDE 73
           + I +DTE       RD+L  + +   +G +     +    N       +  LV +L D 
Sbjct: 6   NFIVIDTE------GRDQLREIAIINAEGELIYEAFSQEDPNYYGRRLKSKPLVDILADF 59

Query: 74  KR---EKIF--HYGRFDIAVLFYTFGVRVR-----PVFCTKIASRLTRTYTNQHGLKDNL 123
           ++   EK+   H    DI VL  +F             C+   ++ +      + L+   
Sbjct: 60  QKIASEKVIICHNANHDIQVLKNSFKKVSIDWQNLNFQCSLELAKNSFPNLPSYSLEYLS 119

Query: 124 KELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           K+ LG+ ++             + +Q   A  D    + L  +  +K
Sbjct: 120 KQ-LGLKVNHKY---------FNPQQAHAARYDAEFTYQLYRKIMDK 156


>gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21]
          Length = 205

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 56/186 (30%)

Query: 23  IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G   L    +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFT 168
           + L  T
Sbjct: 172 VYLMMT 177


>gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 798

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 65/217 (29%), Gaps = 41/217 (18%)

Query: 11  IPAECAARYVDAIAVDTETLGLMPRRDRLCIV--QLSPGDGTV---------------DI 53
           + A  A      +A D E  GL+  +    ++  Q S   G                 D 
Sbjct: 276 LEAMLAKNRTPVMAFDAEGTGLVWCKGSTRVILNQFSYRPGESFMAPTHPLYYEKVFNDP 335

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRT 112
              A  +     +   L DE+  K+ H  +FD  V     G+ VR  +  T++ +     
Sbjct: 336 NPGAKAEALQGQVKRFLEDERVRKLAHNLKFDHQVSARE-GIEVRGWLHDTQLMAFFADE 394

Query: 113 YTNQHGLKDNLKEL----------LGINISKAQQSSDWSADDLSDE--------QLQYAA 154
                 L D  +              + I K+ +  D   DD+ D            YA 
Sbjct: 395 NMMSKSLDDCTRVWVPEMAGYADNFNMAIDKS-KMMDVPPDDILDADGKVVQYGMRNYAG 453

Query: 155 SDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRA 191
            D      L  +  + L+   R      C   +   A
Sbjct: 454 GDTDACLRLAQRLDKILREDPRQ---YQCYRRIQMPA 487


>gi|326484044|gb|EGE08054.1| exonuclease [Trichophyton equinum CBS 127.97]
          Length = 732

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 47/165 (28%), Gaps = 41/165 (24%)

Query: 6   VHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDII-------- 54
           V + DI         D  A+D E   T G      R+ +V     DG   +         
Sbjct: 340 VPDRDIAEGSVTAGRDIFALDCEMCITEGGKSELTRISLV---SWDGERVLDEFVKPENP 396

Query: 55  --------------RIAAGQKNAPNLVGMLVD---EKREKIFHYGRFDIAVLFYTFGVRV 97
                         ++     N  ++   L++    +   I H    D+  L        
Sbjct: 397 IIDYLTRFSGVTKEKLDPVTTNLSDIQQKLLNILTPRSILIGHSLNSDLNALK-----LT 451

Query: 98  RP-VFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSD 139
            P +  T  A+     R    +  LK   +  LG  I K     D
Sbjct: 452 HPFIVDT--AAIYPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHD 494


>gi|326476075|gb|EGE00085.1| exonuclease [Trichophyton tonsurans CBS 112818]
          Length = 734

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 47/165 (28%), Gaps = 41/165 (24%)

Query: 6   VHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDII-------- 54
           V + DI         D  A+D E   T G      R+ +V     DG   +         
Sbjct: 340 VPDRDIAEGSVTAGRDIFALDCEMCITEGGKSELTRISLV---SWDGERVLDEFVKPENP 396

Query: 55  --------------RIAAGQKNAPNLVGMLVD---EKREKIFHYGRFDIAVLFYTFGVRV 97
                         ++     N  ++   L++    +   I H    D+  L        
Sbjct: 397 IIDYLTRFSGVTKEKLDPVTTNLSDIQQKLLNILTPRSILIGHSLNSDLNALK-----LT 451

Query: 98  RP-VFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSD 139
            P +  T  A+     R    +  LK   +  LG  I K     D
Sbjct: 452 HPFIVDT--AAIYPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHD 494


>gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 1466

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 36/154 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNL 66
           P +        +  D ET GL    +   ++Q++      G+                  
Sbjct: 418 PVDMDLHEATYVVFDVETTGLSAINND--LIQIAASKMYKGNIIEQFDEFINPGHPLSTF 475

Query: 67  VGMLV---------DEKREKIF--------------HYGRFDIAVL-----FYTFGVRVR 98
              L           +   K+               H   FD+  +      +   +  +
Sbjct: 476 TTELTGITDNHLIGAKPILKVLEAFQDFCQNTILVAHNASFDVGFMNANYERHQLPLINQ 535

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           PV  T   +R       +HGL    K    +++ 
Sbjct: 536 PVIDTLEFARNLYPEYKRHGLGPLTKRF-QVSLD 568


>gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
 gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
          Length = 198

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 19/88 (21%)

Query: 78  IFHYGRFDIAVL---FYTFGVRVRPVF---CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           + H   FD++ L   +   G R  P F    T++ +R    +  ++ L    +  L I +
Sbjct: 103 VAHNAPFDLSFLRMEYARCG-RPYPGFRAIDTRLLARSVLPHLGRYSLASLTRA-LDIPL 160

Query: 132 SKAQQSSDWSADDLSDEQ----LQYAAS 155
                        LSD      L YA +
Sbjct: 161 QHHH-------RALSDAWACGDLFYALA 181


>gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 900

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 35/165 (21%)

Query: 63  APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASRLTRT 112
           AP    +  D     +    + H   FD+  +   F       R + V  T    ++   
Sbjct: 68  APYFNEVAEDIYNQIKDCIFVAHNISFDLNFIKNAFDNCNIQFRPKKVMDTLELFKIAFP 127

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD----------------WSADDL-SDEQLQYAAS 155
               + L +  +    I ++ A   +D                +    L + +QL Y + 
Sbjct: 128 TDKSYQLSELAQSH-NIPLTNAH-RADEDATTTAKLMIKAFEKFENLPLDTQKQLYYLSK 185

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLATS---CCNFLMDRAELDLLG 197
           D+ +   L     E + R  +S            ++ R ++DL G
Sbjct: 186 DLKY--DLYNILFEMV-RNNQSKPLDEKFGQFEQIIYRKQVDLKG 227


>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
          Length = 1450

 Score = 36.1 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53
            A  A      +  D ET GL    D    L  V++  G      D  +D          
Sbjct: 415 DAHEALNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474

Query: 54  ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100
                   +  G K+   ++ M +   +    + H   FD+  L   +  +G+     PV
Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPV 534

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   +R       + GL    K+  G+++ +  ++
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570


>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
 gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
          Length = 1450

 Score = 36.1 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPG------DGTVDI--------- 53
            A  A      +  D ET GL    D    L  V++  G      D  +D          
Sbjct: 415 DAHEALNEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 474

Query: 54  ------IRIAAGQKNAPNLVGMLV--DEKREKIFHYGRFDIAVL---FYTFGV--RVRPV 100
                   +  G K+   ++ M +   +    + H   FD+  L   +  +G+     PV
Sbjct: 475 DLTGITDEMVRGSKSEEEVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPV 534

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   +R       + GL    K+  G+++ +  ++
Sbjct: 535 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 570


>gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 482

 Score = 36.1 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 44/133 (33%), Gaps = 32/133 (24%)

Query: 25  VDTETLGLMPRRDRLCIVQL-SPGDGTVD-----------IIRIAAGQ---------KNA 63
           +D E+ G  P RDR+  + +    DG V             I     +           A
Sbjct: 10  IDVESTGAHPVRDRITEIAILRVEDGEVVARWESLVAPGQPIPPLIEEVTGISDAMVAEA 69

Query: 64  PNLVGMLVD------EKREKIFHYGRFDIAVLFYTF---GVRV-RPVFCTKIASRLTRTY 113
           P    +L D      E    + H  RFD   +   F   G     PV CT   SR     
Sbjct: 70  PAF-EVLADTVAALLEGCVFVAHSARFDYGFIRNAFTRIGREFEAPVLCTVKLSRALYPE 128

Query: 114 TNQHGLKDNLKEL 126
            ++HGL   ++  
Sbjct: 129 HHRHGLDALIERH 141


>gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola
           ATCC 35405]
 gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405]
 gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola
           F0402]
          Length = 217

 Score = 36.1 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 42/151 (27%), Gaps = 40/151 (26%)

Query: 24  AVDTETLGLMPRRDRL-----------CIVQLSPGDGTVDIIRIAAGQKNA--------- 63
           A DTET G   + +R+            ++        V I         A         
Sbjct: 18  AFDTETTGTEAKAERVVEIGCVKFDIRGVI----ARYNVLIDPEKPMPPEAGKVNQITDE 73

Query: 64  -----PNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASR 108
                P    +L D          + H   FDI  +               VF T   +R
Sbjct: 74  MLAGQPKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGKTKLTNKVFDTLTFAR 133

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
            T      + L++   +  G+    A ++ D
Sbjct: 134 ETLPGLQSYALQNLATQF-GVQAVNAHRAED 163


>gi|12321961|gb|AAG51018.1|AC069474_17 hypothetical protein; 78912-79874 [Arabidopsis thaliana]
          Length = 308

 Score = 36.1 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 38/143 (26%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF 101
           +QL  G+    II++    +   +L   L D     +                     V+
Sbjct: 187 LQLCVGN-QCLIIQLCHCDQVPTSLRSFLTDPNTTFV--------------------GVW 225

Query: 102 CTKIASRLTRTYT----------NQHGLKDNLKELLG-----INISKAQQSSDWSADDLS 146
            ++ A +L R+                 ++ + E LG     + +  A   SDWS   L 
Sbjct: 226 NSQDAGKLARSKHQLEIGKLLDIRGCSFEEIVDEFLGSPGSGLRLDPAISMSDWSVHVLD 285

Query: 147 DEQLQYAASDVV--HLHALRLQF 167
            +Q+  A+ DV   HL  +  + 
Sbjct: 286 RDQVLQASIDVHVCHLLGVMARL 308


>gi|327349600|gb|EGE78457.1| exonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 727

 Score = 36.1 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 48/164 (29%), Gaps = 37/164 (22%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRI----A 57
            V E DI         + +++D E   T G   +  R+ +V     DG V +  +     
Sbjct: 331 TVSENDIQQGSITSGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDELVKPEK 387

Query: 58  AGQKNAPNLVGM---------------------LVDEKREKIFHYGRFDIAVLFYTFGVR 96
                     G+                     LV      I H    D++ L       
Sbjct: 388 PIIDYLTRFSGITKEMLDPVTTRLPDVQQRLLSLVGPHTILIGHSLNSDLSALK-----L 442

Query: 97  VRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
             P +  T I     R    +  LK   ++ LG  I K Q   D
Sbjct: 443 THPFIIDTSIIYPHPRGSPLKSSLKWLSQKYLGKEIQKGQAGHD 486


>gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49]
          Length = 374

 Score = 36.1 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR 98
           +Q   G     +    +    AP L   L  + +  + H   FD   L   F   G+   
Sbjct: 62  IQQLTGISEAMVRDAPSFASLAPALFERL--DGKLFVAHNASFDRGFLRAEFERAGLAFN 119

Query: 99  P-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           P V CT   SR      ++HGL   ++  
Sbjct: 120 PDVLCTVRLSRALFPRESRHGLDALIERH 148


>gi|239608400|gb|EEQ85387.1| exonuclease [Ajellomyces dermatitidis ER-3]
          Length = 767

 Score = 36.1 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 48/164 (29%), Gaps = 37/164 (22%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRI----A 57
            V E DI         + +++D E   T G   +  R+ +V     DG V +  +     
Sbjct: 371 TVSENDIQQGSITSGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDELVKPEK 427

Query: 58  AGQKNAPNLVGM---------------------LVDEKREKIFHYGRFDIAVLFYTFGVR 96
                     G+                     LV      I H    D++ L       
Sbjct: 428 PIIDYLTRFSGITKEMLDPVTTRLPDVQQRLLSLVGPHTILIGHSLNSDLSALK-----L 482

Query: 97  VRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
             P +  T I     R    +  LK   ++ LG  I K Q   D
Sbjct: 483 THPFIIDTSIIYPHPRGSPLKSSLKWLSQKYLGKEIQKGQAGHD 526


>gi|261203129|ref|XP_002628778.1| exonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239586563|gb|EEQ69206.1| exonuclease [Ajellomyces dermatitidis SLH14081]
          Length = 727

 Score = 36.1 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 48/164 (29%), Gaps = 37/164 (22%)

Query: 5   RVHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRI----A 57
            V E DI         + +++D E   T G   +  R+ +V     DG V +  +     
Sbjct: 331 TVSENDIQQGSITSGREILSLDCEMCITEGGSSQLTRVSLV---SWDGEVVLDELVKPEK 387

Query: 58  AGQKNAPNLVGM---------------------LVDEKREKIFHYGRFDIAVLFYTFGVR 96
                     G+                     LV      I H    D++ L       
Sbjct: 388 PIIDYLTRFSGITKEMLDPVTTRLPDVQQRLLSLVGPHTILIGHSLNSDLSALK-----L 442

Query: 97  VRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
             P +  T I     R    +  LK   ++ LG  I K Q   D
Sbjct: 443 THPFIIDTSIIYPHPRGSPLKSSLKWLSQKYLGKEIQKGQAGHD 486


>gi|221132377|ref|XP_002166732.1| PREDICTED: similar to YALI0B15400p [Hydra magnipapillata]
          Length = 943

 Score = 36.1 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 8/79 (10%)

Query: 60  QKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGL 119
           Q    +L+ ++       I H   FD+  L          +  T +     R    +  L
Sbjct: 358 QDVQRDLLKIIQ-PDTILIGHSLDFDLRSLMLHHD----NIIDTSVLYVDNRGPRYKSSL 412

Query: 120 KDNLKELLGINI---SKAQ 135
           +  +K  L  +I    K  
Sbjct: 413 RCLVKSYLNRDIQNTDKGH 431


>gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae
           T3T1]
          Length = 253

 Score = 36.1 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 53/186 (28%), Gaps = 56/186 (30%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G+       +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPDRLVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR--------VRPVFC 102
                 + P+   +  D        E + H   FD+  + Y F           +  V  
Sbjct: 68  TDEMLADKPDFKTIAQDFIEYIRGAELLIHNAPFDVGFMDYEFRKLGLDIKTTDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNSLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFT 168
           + L  T
Sbjct: 172 VYLSMT 177


>gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217]
 gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217]
          Length = 688

 Score = 36.1 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 19/102 (18%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR----PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + H   FD+A L     V  R    PV CT + S     ++ QH L        GI I  
Sbjct: 579 VAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLMSAGLFDHSGQHTLDALCDRF-GITIPP 637

Query: 134 AQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
             + +              A  D V    + ++    LQ  G
Sbjct: 638 EARHT--------------AMGDTVATAEVFVRMLGLLQAKG 665


>gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1565

 Score = 36.1 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP----VFCTKIA-S 107
           ++         P  +  + D     + H   FD+  + +       P    V  T +A +
Sbjct: 601 VLPYPKIDVILPQFLEFVGDA--VLVAHNASFDVGFIGHFAEKLELPFDPTVLDT-VAIA 657

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           RL     N+  L   + + L I++    ++ D
Sbjct: 658 RLLLPNLNRFKLDT-VAKALNISLQNHHRAVD 688


>gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis]
 gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis]
          Length = 963

 Score = 36.1 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 43/159 (27%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT----FGVRVRPVFCTKIA 106
           VD++    G+           + + +K++H   FD  V+        G        T   
Sbjct: 251 VDVLD-GGGRDLLVKFKPFFENPEIKKVWHNYSFDKHVIQNYEVPVCGFHA----DTMHM 305

Query: 107 SRL---TRTYTNQHGLKDN---------LKELLGINISKAQQSSDWSADDLSDE------ 148
           +RL   +R     + L+            +      I K    + +  + L  +      
Sbjct: 306 ARLWNSSRRTEGGYSLEALTGDKRVMSGAQSCFEGLIGKVSMKTIFGKNKLKKDGSEGKM 365

Query: 149 ----------------QLQYAASDVVHLHALRLQFTEKL 171
                            + Y+A D +    L      KL
Sbjct: 366 ITVAPVEELQREEREPWICYSALDAISTWQLYESLKRKL 404


>gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
 gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
          Length = 1438

 Score = 36.1 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 61  KNAPNLVGMLVD-----EKREKIFHYGRFDIAVLF---YTFGV--RVRPVFCTKIASRLT 110
           K+AP++  ++ +          + H  RFD+  +       G+     PV  T   +RL 
Sbjct: 481 KDAPDVEPVMKEFVAFAGDAVLVAHNARFDVGFIQATLRNMGLPEMTNPVLDTLELARLL 540

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
                 H L     +   + +    ++ D
Sbjct: 541 FPTMKNHRLNTLTTKY-KVALESHHRAID 568


>gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68]
          Length = 1463

 Score = 36.1 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 36/153 (23%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDII-------RIAAGQ 60
           A+        +  D ET GL    +   ++Q++      G+   +          ++   
Sbjct: 416 ADVVLSDATYVVFDVETTGLSAVNN--ALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFT 473

Query: 61  KNAP-----------NLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
            +              L  +L +     +    + H   FD+  +          +  +P
Sbjct: 474 TDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVAHNATFDVGFMNVNYERAGLPIISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPDFKRHGLGPLTKRF-GVALE 565


>gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33]
 gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33]
 gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 05ZYH33]
 gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 98HAH33]
 gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1]
 gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14]
          Length = 1463

 Score = 36.1 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 36/153 (23%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDII-------RIAAGQ 60
           A+        +  D ET GL    +   ++Q++      G+   +          ++   
Sbjct: 416 ADVVLSDATYVVFDVETTGLSAVNN--ALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFT 473

Query: 61  KNAP-----------NLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
            +              L  +L +     +    + H   FD+  +          +  +P
Sbjct: 474 TDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVAHNATFDVGFMNVNYERAGLPIISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPDFKRHGLGPLTKRF-GVALE 565


>gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
          Length = 1463

 Score = 36.1 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 36/153 (23%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDII-------RIAAGQ 60
           A+        +  D ET GL    +   ++Q++      G+   +          ++   
Sbjct: 416 ADVVLSDATYVVFDVETTGLSAVNN--ALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFT 473

Query: 61  KNAP-----------NLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
            +              L  +L +     +    + H   FD+  +          +  +P
Sbjct: 474 TDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVAHNATFDVGFMNVNYERAGLPIISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPDFKRHGLGPLTKRF-GVALE 565


>gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3]
 gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3]
          Length = 1463

 Score = 36.1 bits (83), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 36/153 (23%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDII-------RIAAGQ 60
           A+        +  D ET GL    +   ++Q++      G+   +          ++   
Sbjct: 416 ADVVLSDATYVVFDVETTGLSAVNN--ALIQIAASKMHKGNIIAEFDEFIDPGHPLSQFT 473

Query: 61  KNAP-----------NLVGMLVD-----EKREKIFHYGRFDIAVL-----FYTFGVRVRP 99
            +              L  +L +     +    + H   FD+  +          +  +P
Sbjct: 474 TDLTGITDEHVRGSKPLEQVLREFQDFCQDSVMVAHNATFDVGFMNVNYERAGLPIISQP 533

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           V  T   +R       +HGL    K   G+ + 
Sbjct: 534 VIDTLEFARNLYPDFKRHGLGPLTKRF-GVALE 565


>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
 gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
          Length = 1435

 Score = 36.1 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 78  IFHYGRFDIAVL---FYTFGV-RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + H   FD+  L   +  +G+  V     T   +R+       H L    K+  GI +++
Sbjct: 503 VAHNASFDMGFLYVCYKKYGIDTVHATIDTLELARMLHPELKNHRLNTLAKKF-GIELTQ 561

Query: 134 AQQS 137
             ++
Sbjct: 562 HHRA 565


>gi|21228069|ref|NP_633991.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1]
 gi|20906505|gb|AAM31663.1| hypothetical protein MM_1967 [Methanosarcina mazei Go1]
          Length = 249

 Score = 36.1 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 19  YVDAIAV-DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           + D++A  D ET GL P RD++ +V +  G+     +R      N  +LV      +   
Sbjct: 83  FSDSVAFFDIETTGLSPCRDKITVVGIYNGNEVKTYVR----GTNLEDLVEEFSRYRLLV 138

Query: 78  IFHYGRFDIAVLFYTF 93
            F+  RFDI  +   F
Sbjct: 139 SFNGARFDIPFIKSEF 154


>gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN]
 gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923]
 gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I
 gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae]
 gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae]
 gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923]
          Length = 911

 Score = 36.1 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 12/97 (12%)

Query: 49  GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVFCTKI 105
           G +D   +     +A  L   L D    K  H  +    D+A   +T G        T +
Sbjct: 371 GYIDTAMLTPDDDDA--LAAWLADPDNPKALHEAKLAMHDLAGRGWTLGGITS---DTAL 425

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI----SKAQQSS 138
           A+ L R       L D     L   +     + +Q S
Sbjct: 426 AAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQEQFS 462


>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1442

 Score = 36.1 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 36/159 (22%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD---------------- 52
            A         +  D ET GL    D +  ++++     DG V                 
Sbjct: 417 DAHVHLDEATYVVFDVETTGLSAVYDTI--IEIAAVKIQDGEVVDTFERFANPGRPLSNT 474

Query: 53  IIRIAAGQKN----APNLVGMLV--DEKR---EKIFHYGRFDIAVLFYTFGV--RVR--- 98
           II +     +    AP++  +L   +E       + H   FDI  L          +   
Sbjct: 475 IIELTHITDDMLKDAPDISEVLKEYNEWIGDAVLVAHNASFDIGFLNVGLKKAGLPKSNN 534

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           PV  T    R        + L    K+   + +++  ++
Sbjct: 535 PVIDTLELGRFLYPDFKNYRLNTLAKKF-NVELTQHHRA 572


>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
 gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
          Length = 1433

 Score = 36.1 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKVGIEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|225021962|ref|ZP_03711154.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945248|gb|EEG26457.1| hypothetical protein CORMATOL_01994 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 456

 Score = 36.1 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 57  AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV----F-CTKIA 106
                +AP+   +  +       +  + H  +FD+            PV    F C+  A
Sbjct: 170 PDMVTDAPDFATVFPEVVAYVADQVLVAHNAQFDLTAFSRACHATGTPVPHWKFACSLAA 229

Query: 107 SRLTRTYTNQHGLKDNLKELLGINIS 132
           SR  +     H L   + + LG+ + 
Sbjct: 230 SRAAKLGITSHRL-PVVAQHLGVELD 254


>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 1424

 Score = 36.1 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552


>gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT]
 gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336]
 gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336]
          Length = 252

 Score = 36.1 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 54/184 (29%), Gaps = 56/184 (30%)

Query: 25  VDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDI---------I 54
           +DTET G+       +  CI+++                     D  VD           
Sbjct: 13  LDTETTGMNEFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPDRLVDPEAIKVHGITD 72

Query: 55  RIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTK 104
            + A + +   +    +D  +  E I H   FDI  + Y F              +  T 
Sbjct: 73  EMLADKPDFSAIAQEFIDFIKGAELIIHNAPFDIGFMDYEFKKHNFNINTADICLITDTL 132

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
             +R       ++ L      L   NI  ++++            L  A  D   L  + 
Sbjct: 133 QMAR-QMYPGKRNSLDALCDRL---NIDNSKRT------------LHGALLDAEILGDVY 176

Query: 165 LQFT 168
           L  T
Sbjct: 177 LAMT 180


>gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
 gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
          Length = 1427

 Score = 36.1 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 31/150 (20%)

Query: 20  VDAIAVDTETLGLMPRRDRL---CIVQLSPGDGTVDI-------IRIAAGQKNAPNLVGM 69
            D + +D ET GL    D++     V++  G    +        + I     N   +   
Sbjct: 413 SDMVVLDIETTGLNAGTDKIIEIGAVRIKDGKYKDEFSSFINPHVPIPPSIVNLTGITDD 472

Query: 70  LVDE----------------KREKIFHYGRFDIAVLFYTFGVR----VRPVFCTKIASRL 109
           +V                      + H  +FD+  +             PV  T   +R 
Sbjct: 473 MVSNAPDEGDVLQRFMEFAGDAVLVAHNAQFDMGFIRQHGQKYNLKFANPVLDTLTLARQ 532

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139
                  + L       L I++    ++ D
Sbjct: 533 LFKGLKHYKLDTL-AHHLHIDMDNHHRAVD 561


>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
 gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
          Length = 1010

 Score = 36.1 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 53/189 (28%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLS---------PGDGTVDI-----IRIAAGQKN--- 62
            D +  D ET G+  + D   ++++S          G+ +  +     I  AA + N   
Sbjct: 23  ADYVVFDLETTGISSKYDE--VIEISAVKVEAGQVTGEFSTLVNPGRKIPPAASRVNGIT 80

Query: 63  ------APNLVGMLVD-----EKREKIFHY-GRFDIAVLFYTFGVRVRPV-----FCTKI 105
                 A     +L D          + H    FD+  L+       R V       T +
Sbjct: 81  DKMVAGALPFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVPDNDYVDTLL 140

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
            +R      + H L D  +   GI+   A +                A +D      +  
Sbjct: 141 LARAALPELSHHRLVDLAEHY-GISAKGAHR----------------ALNDCHMNQKVYG 183

Query: 166 QFTEKLQRL 174
           +  E+ +  
Sbjct: 184 KLAEEAEAA 192


>gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae]
          Length = 907

 Score = 36.1 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 12/97 (12%)

Query: 49  GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVFCTKI 105
           G +D   +     +A  L   L D    K  H  +    D+A   +T G        T +
Sbjct: 367 GYIDTAMLTPDDDDA--LAAWLADPDNPKALHEAKLAMHDLAGRGWTLGGITS---DTAL 421

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI----SKAQQSS 138
           A+ L R       L D     L   +     + +Q S
Sbjct: 422 AAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQEQFS 458


>gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
          Length = 908

 Score = 36.1 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR---FDIAVLFYTFGVRVRPVF 101
           + G+G   I       ++   L   L D    K  H  +    D+A      G  +  V 
Sbjct: 366 ADGEGR-YIDTATLDPEDEAALASWLADPGPPKALHEAKLAMHDLA----GRGWTLAGVT 420

Query: 102 -CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
             T +A+ L R       L D     L   +
Sbjct: 421 SDTALAAYLVRPGQRSFSLDDLSLRYLRREL 451


>gi|167394004|ref|XP_001740800.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165894891|gb|EDR22723.1| hypothetical protein EDI_336220 [Entamoeba dispar SAW760]
          Length = 536

 Score = 36.1 bits (83), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 12/140 (8%)

Query: 35  RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94
            R  LCI+ ++  +  V ++ I   +++   +  +      EK+ +   F I  L+Y F 
Sbjct: 182 YRGYLCILFIAFSNF-VYVLDILKLKESFEIISILFESTSIEKVCYKA-FGIRTLYYQFK 239

Query: 95  VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
           +    VF   +A    +     +   D  K +    I   + + +W     S   + +  
Sbjct: 240 ITTNNVFLLDVA---CQKMNICYNYSDLFKTMTN-RIP--ETNDEWMIRPYSKYIICWFG 293

Query: 155 SDVVHLH----ALRLQFTEK 170
            D + L      +R +  E+
Sbjct: 294 LDTLQLLNFSIKIRNKLIEQ 313


>gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 911

 Score = 35.7 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 23/127 (18%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR-PVFCTKIASR 108
           +I     +   P  +     +    + H   FD++ +       G+     +  T   +R
Sbjct: 540 VIDAPKIETILPQFME-FCGDAIM-VAHNADFDMSFIIKNCERQGIEKEFTIIDTVALAR 597

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           +     N+  L   + + LG+++    +                A  D      + ++F 
Sbjct: 598 ILLPQLNRFKLDT-VAKALGVSLENHHR----------------AVDDAGCTAEIFVKFV 640

Query: 169 EKLQRLG 175
           + L   G
Sbjct: 641 KMLHDRG 647


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score = 35.7 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPN----LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           L+  D  +  + I     ++      L  +   E  +K FH  +  +  + +   + ++ 
Sbjct: 353 LAMEDHDIYRLAIQNKDSDSDPCLTVLKAICECESVKKYFHDAKQAL-WMLHHHSIELKA 411

Query: 100 V-FCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           +   T +++ L     + + + D   E LG+ +
Sbjct: 412 LAADTMVSAYLLNPTASNYDINDVALEHLGMVL 444


>gi|302838749|ref|XP_002950932.1| hypothetical protein VOLCADRAFT_91413 [Volvox carteri f.
           nagariensis]
 gi|300263627|gb|EFJ47826.1| hypothetical protein VOLCADRAFT_91413 [Volvox carteri f.
           nagariensis]
          Length = 254

 Score = 35.7 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 59  GQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
           G     +L  +L D    K  +  R D   L   +GVR+R V   ++A
Sbjct: 74  GLDGVTSLKRLLEDPVVIKYLYDVRRDAEALSSEYGVRLRGVVDLQLA 121


>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
 gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
          Length = 1424

 Score = 35.7 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552


>gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 662

 Score = 35.7 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFC 102
           +  D  V +I + A +     +V  L D    K      F+   +   FG++  P    C
Sbjct: 46  AYDDDPVQVIDLTAFEDLPDQVVHDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRC 105

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQ 136
           T + + L        G  + + E+L +   K  +
Sbjct: 106 TAVWA-LALGLP---GYLEGVAEVLKLEAQKDTR 135


>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
          Length = 1420

 Score = 35.7 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 393 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 449

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 450 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 509

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 510 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 548


>gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
 gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
          Length = 256

 Score = 35.7 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 56/186 (30%)

Query: 23  IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G   L    +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFT 168
           + L  T
Sbjct: 172 VYLMMT 177


>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
 gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
          Length = 1424

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552


>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
 gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
          Length = 1416

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 389 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 445

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 446 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 505

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 506 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 544


>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
 gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
          Length = 1424

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552


>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
 gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
          Length = 1424

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552


>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
 gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
          Length = 1367

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 29/141 (20%)

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTK-IASRLTR 111
           A ++  P  +  L D     + H   FD   L       +     +P   T  +A  L R
Sbjct: 424 AIEEVLPEFLEFLED-SIL-VAHNANFDYRFLRLWIKKVLGKDWEKPYVDTLALAKSLLR 481

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                + L   +K+ LG+   +  +                A  D      + L+F E +
Sbjct: 482 --LKSYSLDSVVKK-LGLGSFRHHR----------------ALDDARVTAQVFLRFIEMM 522

Query: 172 QRLGRSDLATSCCNFLMDRAE 192
           +++G + L  S    L D  +
Sbjct: 523 KKIGITKL--SEMEKLKDSVD 541


>gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu]
          Length = 375

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR 98
           +Q   G     +    +    AP L   L  + +  + H   FD   L   F   G+   
Sbjct: 62  IQQLTGISDAMVRDAPSFASLAPALFERL--DGKLFVAHNASFDRGFLRAEFERIGLAFN 119

Query: 99  P-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           P V CT   SR      ++HGL   ++  
Sbjct: 120 PDVLCTVRLSRALFPRESRHGLDALIERH 148


>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
 gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
          Length = 1375

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 54  IRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTKIA 106
             +  G       +    D       + H   FD+  L   +G         PV  T   
Sbjct: 481 DDMVEGAPEVAEALKAFKDWAGDAVLVAHNASFDMGFLNVGYGKAGLDKAENPVIDTLEL 540

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +RL       H L    K+   + +++  ++
Sbjct: 541 ARLLYPEMKNHRLNTLAKKF-DVELTQHHRA 570


>gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3]
          Length = 235

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 53/179 (29%), Gaps = 56/179 (31%)

Query: 26  DTETLGLMPRRDRLCIVQLS------------------PGDGTVDIIRI----------A 57
           DTET GL    DR+  +++                      G V    +           
Sbjct: 7   DTETTGLNKESDRI--IEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVIAIHGLTNEHL 64

Query: 58  AGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVLFYTFGVRVRPV------FCT-KIASR 108
             +KN  ++V  L+D  +    + H   FDI  L    G   +P+        T  IA R
Sbjct: 65  KDEKNFEDIVDALLDFIDNATIVAHNANFDIGFLNAELGRVNKPLVSSDNVIDTLSIARR 124

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
             R     + L    K      I  + +             L  A  D   L  + ++ 
Sbjct: 125 --RFPMGPNSLDVLCKRF---GIDNSHRV------------LHGALLDAEILADVYIEL 166


>gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
 gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
          Length = 904

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 41  IVQLSPGDGTVDIIRIAAGQK-NAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
           +V ++  DG    IR       +   L G L D    K FH  ++    L       +  
Sbjct: 356 LVAIAGADGHGAAIRTETMTPEDVRALDGWLADPAVPKAFHEAKWATHALRGGGFAEIAG 415

Query: 100 VF-CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
           V   T +A+ + R       L D     L   +
Sbjct: 416 VTTDTGLAAYIARPGQRSFNLPDLALRYLRRQL 448


>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
 gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
          Length = 1420

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 393 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 449

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 450 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 509

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 510 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 548


>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners
           AB-1]
 gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 1420

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 393 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 449

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 450 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 509

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 510 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 548


>gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
 gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
          Length = 811

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 28/155 (18%)

Query: 44  LSPGDGTVDIIR---IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRP 99
           ++   G +  +    +  G      L  +  D            D+  +    G+     
Sbjct: 271 IALTKGEIYYVPVEGLLTGDYICAALKEI-ADSTIL-----CSIDVKSMLKHVGLEDADH 324

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGIN--------ISKAQQSSDWSADDLSDEQLQ 151
           VF T +A  L     + +   D  +E L           + K    + W     SD  + 
Sbjct: 325 VFDTGVAVYLLNPLKSSYTFDDIAREYLDGALLPTRTDLLGKDSLKAAWEKS--SDGLMS 382

Query: 152 YAASDVVHL----HALRLQFTEKLQRLGRSDLATS 182
           YA     HL    +A R      L+     ++   
Sbjct: 383 YAC----HLAYTAYATREPIENALKETEMWNVYRE 413


>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
          Length = 1424

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQDFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552


>gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
 gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
          Length = 205

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 46  PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPV 100
            G  T  +I      K  P+ +  + +     + H  RFD+A L       +      P 
Sbjct: 64  TGITTAMVIDQPTVDKVLPDFLNFIENT--ILVGHNIRFDLAFLNKKAKEILNKTIKNPF 121

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
            CT   +R   +  +   L    +    I  S+  ++
Sbjct: 122 ICTDHLARKILSDIDSKSLASIAQHF-NIPFSRQHRA 157


>gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 386

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 33  MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89
            P++     +Q   G     +      +  AP L   L  + +  + H   FD   L   
Sbjct: 53  DPQQPIPSFIQQLTGITNAMVRGAPTFEAIAPELFARL--DGKLFVAHNASFDRGFLRGE 110

Query: 90  FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           F   G+   P V CT   SR       +HGL   ++    +   + +  +D
Sbjct: 111 FRRVGISFDPDVLCTVRLSRALFPSEKRHGLDALVERHALVPSDRHRALAD 161


>gi|159466864|ref|XP_001691618.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158278964|gb|EDP04726.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 2077

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 49/175 (28%), Gaps = 42/175 (24%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHG------- 118
           L  +L +  + KI +     ++ L    G     V   +  + ++  +    G       
Sbjct: 775 LRQLLENPGQHKIVYGAEQAVSCLEVATGATAVAVLDVRGLAHVSALHAALVGTGVWTEA 834

Query: 119 ---LKDNLKEL---LGINISKAQQSSDWS---ADDLSDEQLQYAASDVVHLHALRLQFTE 169
              L   +      L  ++  A    DW       L+D  +  AA+   HL  L     +
Sbjct: 835 PELLAALVARHATALRDDLWAADGR-DWMWLQQRPLADGVVLLAAAGCRHLPELWTSLID 893

Query: 170 --------------KLQRLGRSD------LAT-----SCCNFLMDRAELDLLGWE 199
                         +LQ  G  D       A        C F    A     G+ 
Sbjct: 894 ERRLADVAYQAATLRLQAPGNLDSTATDVWAEPSAPTPDCAFGPLPASHPFAGYP 948


>gi|154293583|ref|XP_001547297.1| predicted protein [Botryotinia fuckeliana B05.10]
 gi|150845300|gb|EDN20493.1| predicted protein [Botryotinia fuckeliana B05.10]
          Length = 451

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 32/146 (21%)

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI---ASRLTRTYTNQH 117
            +  +L  +L    R +++   R D   LF+ FG++V  V   K+    SR +R  +N  
Sbjct: 204 DDGLSLKQILELNDRIQLWWDVRSDWDTLFHKFGIQVGKVRDVKLKELLSRFSR-QSNIF 262

Query: 118 GLKDNLKELLGINI-------------------SKAQQSSDWS---ADDLSDEQLQYAAS 155
           GL   ++   G  I                   SK      W       L+     Y A 
Sbjct: 263 GLHR-VRRDEGRYIMSPHKLNTWPRKKTAGGAYSKRHG---WRPVTTRPLTRTARNYIAG 318

Query: 156 DVVHLHALRLQFTEKLQRLGRSDLAT 181
           D   L  L  +  + L      D+  
Sbjct: 319 DTECLFGLHKRLYDNL--ENWLDMTQ 342


>gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
          Length = 921

 Score = 35.7 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 36/149 (24%)

Query: 22  AIAVDTETLGLMPRRDRLCIVQLSP---GDGTVD-----------IIRIAA----GQKNA 63
            + +D ET GL P RDR+  ++++      G +             I  A     G  +A
Sbjct: 6   YVVLDVETTGLDPARDRI--IEIAAVRLEGGNITRQFQTLVNPGRPIPPAIERLTGISDA 63

Query: 64  ------------PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-RVRPVFCTKIASRLT 110
                       P L+ +  D     + H G FD+A L    G     P+  T   SR+ 
Sbjct: 64  MVREAPPLPEVLPGLLDLFRDA--IPVGHNGTFDLAFLNQALGHGWHSPLLDTLALSRIL 121

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
                 H L     + L +  +   ++ D
Sbjct: 122 FPCLASHRLDYM-SKYLTLEATGHHRALD 149


>gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 867

 Score = 35.7 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 23/180 (12%)

Query: 5   RVHEGDIPAECAARYVDAIA-VDT--ETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQK 61
           +V + ++P   A    D  A +D   E +G     D L +      + +   + +    +
Sbjct: 298 QVPQVELPEVVATSGADLRAWLDAVEEPVGFALEDDTLGL----ASNDSAIWVDLTDLDE 353

Query: 62  NAPNLVGMLVDEKREKIFHYGRFDI-AVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
           N+ N +   +  K+  + H  +  + A +   F  + RP+  T++A+ L       + L 
Sbjct: 354 NSFNALDTFISTKKV-VAHDVKPQVHAWVERGF-TQPRPIMDTELAAYLLAPDARGYSLA 411

Query: 121 DNLKELLGINISKAQQSSDWSADDLSD--EQLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
           D   + LG+ + +         D L+D  EQL + A       AL  +  + L+R    D
Sbjct: 412 DMASD-LGVVLEED-------RDLLTDVGEQLGHRA---WVTVALYPRLRQDLERNHLQD 460


>gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 885

 Score = 35.7 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 28/153 (18%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYT 114
           I+  + +   L  ++ DEK EK+ +  + DI +L    G+ ++      +IA  L  +  
Sbjct: 354 ISYEEIDFDFLKKIMEDEKVEKLGYSLKEDIIILM-DLGIDIKNYSHDVEIAEYLLNSTQ 412

Query: 115 NQH------------GLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           + +            G  D  ++LLG   +K +  +D   DDL     +Y A     L+ 
Sbjct: 413 SDYDINKISMAYFKNGYLDL-EDLLGKG-AKKKTYADLDKDDL----FKYFA---FVLNT 463

Query: 163 LRLQFTEKLQRLGRSDLATSCCNFLMDRAELDL 195
           +      +L+ L +  +       L    EL L
Sbjct: 464 IY-----RLEDLQKEKIDEEEMTSLYQDMELPL 491


>gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score = 35.7 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 48/180 (26%), Gaps = 58/180 (32%)

Query: 26  DTETLGLMPRRDRLCIVQLS-------------------PGDGTVDIIRIA------AGQ 60
           DTET GL  R DR+  +++                    PGD  V    +A         
Sbjct: 7   DTETTGLDNRADRI--IEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGITDEFL 64

Query: 61  KNAPNLVGMLVDEKRE-------KIFHYGRFDIAVLFYTFG------VRVRPVFCTKIAS 107
           K+      +   E+          I H   FD+  +   F       +    V  T   +
Sbjct: 65  KDKQPFAEV--AEQILTFFGDAKWIAHNATFDMGFINAEFARIGLPPILPERVLDTLSMA 122

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           R          L    +      I  + ++               A  D   L  + ++ 
Sbjct: 123 RRKHPMGPN-SLDALCRRY---GIDNSHRT------------KHGALLDSELLAEVYIEM 166


>gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 905

 Score = 35.7 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 23/127 (18%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR-PVFCTKIASR 108
           +I     +   P  +     +    + H   FD++ +       G+     +  T   +R
Sbjct: 534 VIDAPKIETILPQFME-FCGDAIM-VAHNADFDMSFIIKNCERQGIEKEFTIIDTVALAR 591

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           +     N+  L   + + LG+++    +                A  D      + ++F 
Sbjct: 592 ILLPQLNRFKLDT-VAKALGVSLENHHR----------------AVDDAGCTAEIFVKFV 634

Query: 169 EKLQRLG 175
           + L   G
Sbjct: 635 KMLHDRG 641


>gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
 gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
          Length = 1432

 Score = 35.7 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L         G    PV  T    R        H L    K+   I + 
Sbjct: 500 VAHNASFDMGFLNVGYQKIGLGDATNPVIDTLELGRFLYPELKNHRLNTLCKKF-DIELV 558

Query: 133 KAQQS 137
              ++
Sbjct: 559 SHHRA 563


>gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 663

 Score = 35.7 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVL---FYTFGV--RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L   +  +G+     PV  T   +R       + GL    K+  G+++ 
Sbjct: 509 VAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYPQFKRFGLGVLSKKF-GVSLE 567

Query: 133 KAQQS 137
           +  ++
Sbjct: 568 QHHRA 572


>gi|300781564|ref|ZP_07091418.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
 gi|300533271|gb|EFK54332.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
          Length = 1474

 Score = 35.7 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 25/134 (18%)

Query: 56   IAAGQKNAPNLVGMLVDEKREKIFHY-GRFDIAVLFYTFGVRVRPVF------CTKIASR 108
              A    A  L+ +L  +    + H   ++D+ VL   +G+ V  +        T I  R
Sbjct: 937  PVATTDIAGELIPLLE-QADTIVGHNIVQYDLPVLQRLYGLDVGALIKAGKVRDTLIMVR 995

Query: 109  LTRTYTNQHGLK-DNLKELLGIN-------------ISKAQQSSDWSADDL-SDEQLQYA 153
            L            D +    G++             ++K     D     + + E ++YA
Sbjct: 996  LASGGNRNLEYNLDAVAHRCGVDGKLLAGSESALKALAKQYGGFD--KIPVDNPEYVEYA 1053

Query: 154  ASDVVHLHALRLQF 167
              DV    A+  + 
Sbjct: 1054 LQDVRANGAVYEKL 1067


>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
 gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
          Length = 1432

 Score = 35.7 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 23/138 (16%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVR 98
           VQ   G     I      ++  P  +  + D     + H   FDI  +        +  +
Sbjct: 466 VQELTGITNDLIKDKPTIEEILPKFMEFVGDS--VLVAHNAEFDIGFINQKCKEMNIEFK 523

Query: 99  P-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
                T + +R+   +  +  L +  KE LG+ +    +                A  D 
Sbjct: 524 NKSVDTLMLARILLPHLKRFKLNNLTKE-LGVPLHNHHR----------------AVDDA 566

Query: 158 VHLHALRLQFTEKLQRLG 175
                + ++F + LQ+ G
Sbjct: 567 AATAQIFIKFLDMLQKKG 584


>gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01]
 gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01]
          Length = 637

 Score = 35.7 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 38/134 (28%), Gaps = 22/134 (16%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQ 116
              ++  P     L D     + H G FD+A L    G+   P+  T + S L       
Sbjct: 518 PKLEEVLPGFRLFLEDT--VLLAHNGAFDMAFLRR-VGIDQPPLVDTLLLSYLLFPDLQD 574

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           H L+   +   G+ +                     A  D +    +       L+  G 
Sbjct: 575 HRLETLAERF-GVPVIGRHT----------------ALGDALMTAEVFAGMVPLLRAKGY 617

Query: 177 SDL--ATSCCNFLM 188
             L      C  L 
Sbjct: 618 RTLGEVLRACARLP 631


>gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866]
          Length = 256

 Score = 35.7 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 56/186 (30%)

Query: 23  IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G   L    +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFT 168
           + L  T
Sbjct: 172 VYLMMT 177


>gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 203

 Score = 35.7 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 30/121 (24%)

Query: 62  NAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIAS 107
           + P    +  D        E I H   FD+  L +   +          +  V  T + +
Sbjct: 66  DKPRFADLAADFLDYIRGAELIIHNAPFDVGFLNHELQLMGADSPPIGELCAVIDTLVMA 125

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           +       ++ L    K     ++   Q+            +L  A  D   L  + L  
Sbjct: 126 KKMHP-GQRNSLDALCKRY---DVDNTQR------------ELHGALLDAEILADVYLAM 169

Query: 168 T 168
           T
Sbjct: 170 T 170


>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
 gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
          Length = 1451

 Score = 35.7 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 36/154 (23%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTV---------------------- 51
            R    +  DTET GL  + D+  +++L+      G V                      
Sbjct: 428 LRDATYVIFDTETTGLSAQYDK--VIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTINLT 485

Query: 52  -DIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCT 103
                +  G K+   +  +  +  +    + H   FD+  +      +   +   P   T
Sbjct: 486 SITDDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDT 545

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
              +R          L    K+ L I +    ++
Sbjct: 546 LPLARYLYPEMKGFRLNTLAKK-LNIKLEHHHRA 578


>gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 398

 Score = 35.7 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +  + V T T  + P +     +Q   G     +    +  + AP L   L  + +  + 
Sbjct: 63  IGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRDAPSFAELAPALFERL--DGKLFVA 120

Query: 80  HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           H   FD   L   F   G    P V CT   SR      ++HGL   +   
Sbjct: 121 HNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALFPRESRHGLDALIARH 171


>gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555]
 gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016]
 gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555]
 gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 880

 Score = 35.7 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 69  MLVDEKREKIFHYGRFDIAV---LFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLK 124
           +  +    K+     +D+ V   + +  G+++  + F  KIA+ L       + L D +K
Sbjct: 382 LFENSSLSKV----SYDVKVPCSILHRMGIKLLGIEFDIKIAAYLMDPARTNYELPDIIK 437

Query: 125 ELLGINIS 132
           E L I IS
Sbjct: 438 EYLNIEIS 445


>gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
          Length = 239

 Score = 35.7 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 54/201 (26%), Gaps = 72/201 (35%)

Query: 18  RYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV------DIIRIAAG------------ 59
           + V  + +DTET GL P            GD  +       I R+  G            
Sbjct: 5   KGVREVVLDTETTGLDP----------DGGDRVIEIGCVELIDRVFTGKVFHEYINPERD 54

Query: 60  ---------------QKNAPNLVGM------LVDEKREKIFHYGRFDIAVLFYTFGVRVR 98
                           K+ P    +       +D     + H   FDI  +        +
Sbjct: 55  IPYYATKIHGITIDMLKDKPKFSEIADKFLEFIDNGIL-VIHNAGFDIKFIKMELDRINK 113

Query: 99  P------VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
                  V  T + +R  +       L    +     NIS            L D +   
Sbjct: 114 SYNSDFQVVDTLVLARK-KFPGVSSTLDALCRRF---NIS------------LQDRKFHG 157

Query: 153 AASDVVHLHALRLQFTEKLQR 173
           A  D   L  + +Q    LQR
Sbjct: 158 ALLDATLLGKVYVQLMGGLQR 178


>gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 244

 Score = 35.7 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRP---------VFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           I H   FD+  L     +             V  T + +R  R    ++ L    K L  
Sbjct: 87  IIHNAAFDLGFLDNELSLLGDNYGRIVERATVVDTLMMAR-ERYPGQRNSLDALCKRL-- 143

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             +  + +            QL  A  D   L  + +  T
Sbjct: 144 -GVDNSHR------------QLHGALLDAQILADVYIALT 170


>gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 375

 Score = 35.7 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIF 79
           +  + V T T  + P +     +Q   G     +    +  + AP L   L  + +  + 
Sbjct: 40  IGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRDAPSFAELAPALFERL--DGKLFVA 97

Query: 80  HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           H   FD   L   F   G    P V CT   SR      ++HGL   +   
Sbjct: 98  HNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALFPRESRHGLDALIARH 148


>gi|167856497|ref|ZP_02479211.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
 gi|167852377|gb|EDS23677.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
          Length = 256

 Score = 35.7 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 34/123 (27%)

Query: 62  NAPNLVGMLVDEKRE--K----IFHYGRFDIAVLFYTFGVRVRP---------VFCT-KI 105
           + P    +  DE  E  K    I H   FD+  + + F     P         V  + ++
Sbjct: 76  DKPAFAEI-ADEFIEFIKGAELIIHNAPFDVGFIDHEFSFLPNPPEKVAQMCTVTDSLQL 134

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           A ++      ++ L       LGI+ SK                L  A  D   L  + L
Sbjct: 135 ARKM--YPGKRNNLDALCDR-LGIDNSKRV--------------LHGALLDAEILADVFL 177

Query: 166 QFT 168
             T
Sbjct: 178 MMT 180


>gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
 gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
          Length = 405

 Score = 35.7 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 37/123 (30%)

Query: 25  VDTETLGLMPR-RDRL---CIVQLSP------------------------GDGTVDIIRI 56
           +D ET GL P+  DR+    ++++S                         G    D++  
Sbjct: 7   IDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQRDVGPTHIHGITARDVLDA 66

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVR-VRPVFCT-KIASRL 109
              Q+ AP L+G L    R  + H  RFD   L Y F     G R   P  CT +++S  
Sbjct: 67  PTFQEVAPYLIGSLA--GRTLVAHNARFDTQFLDYEFERASVGTRPPTPSLCTMQLSSSY 124

Query: 110 TRT 112
            R 
Sbjct: 125 LRG 127


>gi|318059898|ref|ZP_07978621.1| hypothetical protein SSA3_18276 [Streptomyces sp. SA3_actG]
 gi|318076751|ref|ZP_07984083.1| hypothetical protein SSA3_08512 [Streptomyces sp. SA3_actF]
          Length = 190

 Score = 35.7 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQ-SSDWSADDL 145
           A+RL R    +HGL + ++   G     ++   +DWSA  L
Sbjct: 95  AARLHRVRGTRHGLAEAVRLAFGAEPEISESGGADWSARPL 135


>gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
 gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
          Length = 1535

 Score = 35.7 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 24/140 (17%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-VRVRPVF---CTKIASR 108
           +I     +   P  +  + D     + H   FD+  +       ++   F    T   +R
Sbjct: 548 VIDSPDIETILPQFIEFIGDA--VLVAHNASFDVGFIEQNCKRQKIEADFTYVDTVALAR 605

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           +     N+  L   + + L I++    +                A  D      + ++F 
Sbjct: 606 VLLPALNRFKLDT-VAKALNISLENHHR----------------AVDDAGCTAEIFVKFV 648

Query: 169 EKLQRLGRSDLAT-SCCNFL 187
           + L+    + LA  +    L
Sbjct: 649 QMLKERELTTLAKVNEFGDL 668


>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 1444

 Score = 35.7 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 36/154 (23%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTV---------------------- 51
            R    +  DTET GL  + D+  +++L+      G V                      
Sbjct: 421 LRDATYVIFDTETTGLSAQYDK--VIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTINLT 478

Query: 52  -DIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCT 103
                +  G K+   +  +  +  +    + H   FD+  +      +   +   P   T
Sbjct: 479 SITDDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDT 538

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
              +R          L    K+ L I +    ++
Sbjct: 539 LPLARYLYPEMKGFRLNTLAKK-LNIKLEHHHRA 571


>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius
           CECT 5713]
          Length = 1444

 Score = 35.7 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 36/154 (23%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTV---------------------- 51
            R    +  DTET GL  + D+  +++L+      G V                      
Sbjct: 421 LRDATYVIFDTETTGLSAQYDK--VIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTINLT 478

Query: 52  -DIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCT 103
                +  G K+   +  +  +  +    + H   FD+  +      +   +   P   T
Sbjct: 479 SITDDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDT 538

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
              +R          L    K+ L I +    ++
Sbjct: 539 LPLARYLYPEMKGFRLNTLAKK-LNIKLEHHHRA 571


>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
 gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
          Length = 1452

 Score = 35.7 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 32/157 (20%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGD-----------------GTV 51
            A  A      +  D ET GL    D    L  V++  G+                  TV
Sbjct: 417 DAHEALSEATYVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTV 476

Query: 52  DIIRIAAGQ-----KNAPNLVGMLV-DEKREKIFHYGRFDIAVL-----FYTFGVRVRPV 100
           D+  I  G           L   L   +    + H   FD+  L      +       PV
Sbjct: 477 DLTGITDGMVRGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARHGIPEAANPV 536

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
             T   +R       + GL    K+  G+++ +  ++
Sbjct: 537 IDTLELARYLYPQFKRFGLGVLSKKF-GVSLEQHHRA 572


>gi|294941548|ref|XP_002783131.1| hypothetical protein Pmar_PMAR013604 [Perkinsus marinus ATCC
          50983]
 gi|239895524|gb|EER14927.1| hypothetical protein Pmar_PMAR013604 [Perkinsus marinus ATCC
          50983]
          Length = 55

 Score = 35.7 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 17 ARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV 51
                +A+D E   +   R   C++Q   G G V
Sbjct: 16 LAEAPEVAIDLEHHNMQSYRGFTCLIQRRVGAGVV 50


>gi|333027238|ref|ZP_08455302.1| putative secreted protein [Streptomyces sp. Tu6071]
 gi|332747090|gb|EGJ77531.1| putative secreted protein [Streptomyces sp. Tu6071]
          Length = 190

 Score = 35.7 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQ-SSDWSADDL 145
           A+RL R    +HGL + ++   G     ++   +DWSA  L
Sbjct: 95  AARLHRVRGTRHGLAEAVRLAFGAEPEISESGGADWSARPL 135


>gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
 gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
          Length = 897

 Score = 35.7 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVF-CTKIASR 108
           +   A   ++   L   L DE R K  H    ++    +     G  +  V   T +A+ 
Sbjct: 351 VDPTALSVEDDAALADWLADESRPKAVH----EVKWALHALRGRGWTLTGVTSDTALAAY 406

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           L R       L D     L   +     + D
Sbjct: 407 LVRPGQRTFNLDDLALRYLRRELKAEDGAGD 437


>gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 383

 Score = 35.7 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 33  MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89
            P++     +Q   G     +         AP L   L    +  + H   FD   L   
Sbjct: 53  DPQQPIPSFIQQLTGITNAMVRGAPTFDAIAPELFARL--NGKLFVAHNASFDRGFLRGE 110

Query: 90  FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           F   G+   P V CT   SR       +HGL   ++  
Sbjct: 111 FRRVGISFDPDVLCTVRLSRALFPSEKRHGLDALVERH 148


>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
 gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1444

 Score = 35.7 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 36/154 (23%)

Query: 17  ARYVDAIAVDTETLGLMPRRDRLCIVQLSP---GDGTV---------------------- 51
            R    +  DTET GL  + D+  +++L+      G V                      
Sbjct: 421 LRDATYVIFDTETTGLSAQYDK--VIELAAVKMEKGNVIDTFEEFIDPGHPLSQTTINLT 478

Query: 52  -DIIRIAAGQKNAPNLVGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCT 103
                +  G K+   +  +  +  +    + H   FD+  +      +   +   P   T
Sbjct: 479 SITDDMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERHNMEMIQEPWIDT 538

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
              +R          L    K+ L I +    ++
Sbjct: 539 LPLARYLYPEMKGFRLNTLAKK-LNIKLEHHHRA 571


>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
 gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
          Length = 1459

 Score = 35.7 bits (82), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 78  IFHYGRFDIAVLFYTF--GVRVRP---VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           I H  +FD   L   F       P   V  T IASR+      +H L+D    L
Sbjct: 509 IAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIASRIGFPNYKRHKLEDVTSRL 562


>gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas
           albilineans]
          Length = 244

 Score = 35.7 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVLFYTF-------GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + H   FD+  L Y         G  +    V  T + +R  R    ++ L    K L  
Sbjct: 87  VIHNASFDLGFLDYELSRLGESYGCILDRASVVDTLLLAR-ERFPGQRNSLDALCKRL-- 143

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             +  A +            QL  A  D   L  + +  T
Sbjct: 144 -GVDNAHR------------QLHGALLDAQILCEVYIALT 170


>gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score = 35.7 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 47/178 (26%), Gaps = 54/178 (30%)

Query: 26  DTETLGLMPRRDRL---------------CIVQLS--PGDGTVDIIRIA------AGQKN 62
           DTET GL  R DR+                ++ +   PGD  V    +A         K+
Sbjct: 7   DTETTGLDNRADRIIEIGGIELFNHFPTGNVIHIYINPGDQKVHPDALAVHGITDEFLKD 66

Query: 63  APNLVGM-------LVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIASRL 109
                 +         D K   I H   FD+  +           +    V  T   +R 
Sbjct: 67  KKPFAEVAEEILTFFGDAK--WIAHNATFDMGFINAELARIGLPPILPERVLDTLSMARR 124

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                    L    +      I  + ++               A  D   L  + ++ 
Sbjct: 125 KHPMGPN-SLDALCRRY---GIDNSHRT------------KHGALLDSELLAEVYIEM 166


>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 946

 Score = 35.7 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552


>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
 gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
          Length = 913

 Score = 35.7 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75
           DTET  L P   ++  +  S   G    + +A    +AP           L   L   ++
Sbjct: 341 DTETTSLDPMTAQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPREEVLAKLKPWLESAQQ 400

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           +K+  + ++D  VL    G+ +R +   T + S +  ++   H + +     LG+   K 
Sbjct: 401 KKVGQHLKYDEQVLANY-GIEMRGIEHDTLLQSYVLESHRP-HDMDNLALRHLGVKTIKY 458

Query: 135 Q 135
           +
Sbjct: 459 E 459


>gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 697

 Score = 35.7 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 23/127 (18%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR-PVFCTKIASR 108
           +I     +   P  +     +    + H   FD++ +       G+     +  T   +R
Sbjct: 534 VIDAPKIETILPQFME-FCGDAIM-VAHNADFDMSFIIKNCERQGIEKEFTIIDTVALAR 591

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           +     N+  L   + + LG+++    +                A  D      + ++F 
Sbjct: 592 ILLPQLNRFKLDT-VAKALGVSLENHHR----------------AVDDAGCTAEIFVKFV 634

Query: 169 EKLQRLG 175
           + L   G
Sbjct: 635 KMLHDRG 641


>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1421

 Score = 35.7 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY---TFGVRVRPVF-CTKIASRLT 110
            +       P  +  + D     I H   FD+  +       G+     +  T   +R  
Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARAL 520

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
             +   H L    K+   +N+    ++ D
Sbjct: 521 EPHLKNHKLDTLTKKY-NVNLFNHHRACD 548


>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
 gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
          Length = 1421

 Score = 35.7 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY---TFGVRVRPVF-CTKIASRLT 110
            +       P  +  + D     I H   FD+  +       G+     +  T   +R  
Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARAL 520

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
             +   H L    K+   +N+    ++ D
Sbjct: 521 EPHLKNHKLDTLTKKY-NVNLFNHHRACD 548


>gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 242

 Score = 35.7 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 25/102 (24%)

Query: 76  EKIFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           E + H   FDI+ + + FG+          +  +  T   ++       ++ L    K  
Sbjct: 97  EVVAHNASFDISFMDHEFGLLRPKGPKTADICGILDTLAIAKYLHP-GQKNNLDALCKRY 155

Query: 127 LGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
            GI         D S  +L       A  D   L  + L  T
Sbjct: 156 -GI---------DNSRREL-----HGALLDAEILADVYLLMT 182


>gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus
           UCN34]
 gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 1464

 Score = 35.7 bits (82), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 40/148 (27%), Gaps = 35/148 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQLSP-----GDGTVDIIRIAAGQKNAPNL 66
           P +        +  D ET GL    +   ++Q++      G+             +    
Sbjct: 416 PQDIELNEATYVVFDVETTGLSAVNNE--LIQIAASKMYKGNIVEQFDEFINPGHHLSAF 473

Query: 67  ---------------------VGMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVR 98
                                + M  D  +    + H   FD+  +      +   +  +
Sbjct: 474 TTELTGITDNHVRNAKPIEEVLQMFQDFCQDTVLVAHNATFDVGFMNANYERHGMPIITQ 533

Query: 99  PVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           PV  T   +R       +HGL    K  
Sbjct: 534 PVIDTLEFARNLYPEYKRHGLGPLTKRF 561


>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
 gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
          Length = 1433

 Score = 35.7 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-----RVRPVFCTKIAS 107
           +I      +        + D     + H   FD+  +   F          PV  T   +
Sbjct: 477 LIDAPEVDEVFKKFEEWMGDHTL--VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELA 534

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           R        H L    K++  I +++  ++
Sbjct: 535 RFLFPEMKNHRLNTLCKKM-DIELTQHHRA 563


>gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 579

 Score = 35.7 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 46/143 (32%), Gaps = 39/143 (27%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGR-FDIAVLFYTFGVRV--RPVFCTKIASRLTR 111
            +   +    +L     D +   ++H G  FD  +L     + +    V  T + + L  
Sbjct: 46  DVTQDKTMPADLKAYFDDSEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQA-LAH 104

Query: 112 TYTNQHGLKDNLKELLGINISKA----------------------QQSSDWSADDLS--D 147
                 GL   L ++  +N  KA                      Q+++      L+  +
Sbjct: 105 GLPGALGL---LCDIFNVNSDKAKDKEGKALISLLCKPRPKNSKIQRAT-----ALTHAE 156

Query: 148 EQ---LQYAASDVVHLHALRLQF 167
           E      YA SD++ +  +    
Sbjct: 157 EWQRFKDYAGSDILAMREIYQHL 179


>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1410

 Score = 35.7 bits (82), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIASRLT 110
           R     +  P  +  +  +    + H   FD+  +       G+ V  PV  T   SR  
Sbjct: 460 RYPPIDEVLPKFLEFI--KGSTLVAHNANFDVTFIKTKAKNLGIEVDNPVLDTLELSR-- 515

Query: 111 RTYTNQHGLK-DNLKELLGINISKAQQSSD 139
             Y N    K D + + LG+++    ++ D
Sbjct: 516 HMYENLKNYKLDTVAQHLGVSLENHHRAVD 545


>gi|255928521|gb|ACU42136.1| gp59 [Mycobacterium phage UncleHowie]
          Length = 619

 Score = 35.7 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           A+A D ET GL       C+     Q   G     ++     +++A  LV  +       
Sbjct: 51  ALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHA-ALVAEMYALAGPV 109

Query: 78  IFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHG----LKDNLKELLGI 129
           I H   FDI  LF+       V  + +  T + +R        +G    L       LG+
Sbjct: 110 ILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYLGL 169

Query: 130 N 130
           +
Sbjct: 170 S 170


>gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 375

 Score = 35.7 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR 98
           +Q   G     +         AP L   L  + +  + H   FD   L   F   G+   
Sbjct: 62  IQQLTGISDAMVRDAPTFASLAPALFERL--DGKLFVAHNASFDRGFLRAEFERAGLAFN 119

Query: 99  P-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           P V CT   SR      ++HGL   ++  
Sbjct: 120 PDVLCTVRLSRALFPRESRHGLDALIERH 148


>gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
          Length = 1421

 Score = 35.7 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY---TFGVRVRPVF-CTKIASRLT 110
            +       P  +  + D     I H   FD+  +       G+     +  T   +R  
Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARAL 520

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
            ++   H L    K+   +N+    ++ D
Sbjct: 521 ESHLKNHKLDTLTKKY-NVNLFNHHRACD 548


>gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
 gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
          Length = 256

 Score = 35.7 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 56/186 (30%)

Query: 23  IAVDTETLG---LMPRRDRLCIVQLSP------------------GDGTVDIIRI----- 56
           I +DTET G   L    +  CI+++                     D  VD   I     
Sbjct: 8   IVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVHGI 67

Query: 57  -AAGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFC 102
                 + P    +  D        E + H   FD+  + Y F              V  
Sbjct: 68  TDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   +R       ++ L       LGI+ SK                L  A  D   L  
Sbjct: 128 TLQMAR-QMYPGKRNNLDALCDR-LGIDNSKRT--------------LHGALLDAEILAD 171

Query: 163 LRLQFT 168
           + L  T
Sbjct: 172 VYLMMT 177


>gi|302518938|ref|ZP_07271280.1| secreted protein [Streptomyces sp. SPB78]
 gi|302427833|gb|EFK99648.1| secreted protein [Streptomyces sp. SPB78]
          Length = 174

 Score = 35.7 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQ-SSDWSADDL 145
           A+RL R    +HGL + ++   G     ++   +DWSA  L
Sbjct: 79  AARLHRVRGTRHGLAEAVRLAFGAEAEISESGGADWSARPL 119


>gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
 gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
          Length = 239

 Score = 35.7 bits (82), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVL---FYTFGVRVRP------VFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + H   FD+  +   F     R +P      +  T + +R       +  L    +EL  
Sbjct: 97  VIHNAPFDVGFMDQEFRFLNKRTKPTAEISTITDTLVMARK-MYPGKRASLDALCREL-- 153

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             I    +             L  A  D   L  + L  T
Sbjct: 154 -GIDNKHRV------------LHGALLDAEILADVYLLMT 180


>gi|255927583|gb|ACU41205.1| gp59 [Mycobacterium phage Colbert]
          Length = 619

 Score = 35.7 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           A+A D ET GL       C+     Q   G     ++     +++A  LV  +       
Sbjct: 51  ALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHA-ALVAEMYALAGPV 109

Query: 78  IFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHG----LKDNLKELLGI 129
           I H   FDI  LF+       V  + +  T + +R        +G    L       LG+
Sbjct: 110 ILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYLGL 169

Query: 130 N 130
           +
Sbjct: 170 S 170


>gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 375

 Score = 35.7 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 47/146 (32%), Gaps = 26/146 (17%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVR 98
           +Q   G     +    +    AP L   L  + +  + H   FD   L   F   G    
Sbjct: 62  IQQLTGISDAMVRDAPSFASLAPALFERL--DGKLFVAHNASFDRGFLRAEFERAGYAFN 119

Query: 99  P-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
           P V CT   SR       +HGL   ++   G+  S   +                A +D 
Sbjct: 120 PDVLCTVRLSRALFPREARHGLDALIERH-GLVPSARHR----------------ALADA 162

Query: 158 VHLHALRLQFTEK--LQRLGRSDLAT 181
             L     Q  E   L+RL R  +A 
Sbjct: 163 DLLWQFWRQLHEIVPLERL-RDQIAR 187


>gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908]
 gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908]
          Length = 242

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + H   FD++ + + F +          + P+  T   ++       ++ L    K   G
Sbjct: 99  VAHNANFDVSFMDHEFSLLQPVGPKTADICPILDTLEIAKFLHP-GQKNNLDALCKRY-G 156

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           I         D S  DL       A  D   L  + L  T
Sbjct: 157 I---------DNSRRDL-----HGALLDAEILADVYLMMT 182


>gi|238609930|ref|XP_002397596.1| hypothetical protein MPER_01947 [Moniliophthora perniciosa FA553]
 gi|215472406|gb|EEB98526.1| hypothetical protein MPER_01947 [Moniliophthora perniciosa FA553]
          Length = 141

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 138 SDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNFLMDRAELD 194
           ++W   +  +E ++YA SD   L  +       L    RS   +   N     + +D
Sbjct: 19  TNWRIGEY-EEMVEYARSDTHFLLYIYDSLRNALLDRARSQSTSGDMNMAASSSNVD 74


>gi|255928280|gb|ACU41897.1| gp60 [Mycobacterium phage Puhltonio]
          Length = 619

 Score = 35.4 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           A+A D ET GL       C+     Q   G     ++     +++A  LV  +       
Sbjct: 51  ALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHA-ALVAEMYALAGPV 109

Query: 78  IFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHG----LKDNLKELLGI 129
           I H   FDI  LF+       V  + +  T + +R        +G    L       LG+
Sbjct: 110 ILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYLGL 169

Query: 130 N 130
           +
Sbjct: 170 S 170


>gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
 gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
          Length = 1442

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 78  IFHYGRFDIAVLF---YTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + H   FD   +       G+     +  T   +R       +  L + + + LG+++  
Sbjct: 511 VAHNAAFDTGFIKKNCNDLGLEFNSTIVDTVPLARFLYPELKRVKL-NLVAKHLGVSLEN 569

Query: 134 AQQSSD 139
             ++ D
Sbjct: 570 HHRAVD 575


>gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
 gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 395

 Score = 35.4 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 33  MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89
            P++     +Q   G     +      +  AP L   L    +  + H   FD   L   
Sbjct: 65  DPQQPIPSFIQQLTGITNAMVRGAPTFEAIAPALFERL--NGKLFVAHNASFDRGFLRGE 122

Query: 90  FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           F   G+   P V CT   SR       +HGL   ++    +   + +  +D
Sbjct: 123 FRRAGLAFDPDVLCTVRLSRALFPAEKRHGLDALVERHTLVPSDRHRALAD 173


>gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
 gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
          Length = 250

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 27/100 (27%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVLFYTF-----GVRVRPVFCTKI----ASRLTRTYTNQHGLKDNLKELLG 128
           I H   FDI  + Y F      +     FC +I    A         ++ L       L 
Sbjct: 96  IIHNASFDIGFMDYEFRKLNRDIPPTETFC-QITDSLAMARALFPGKRNNLDALCDRYL- 153

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                     D S   L       A  D   L  + L  T
Sbjct: 154 ---------IDNSKRTL-----HGALLDAEILSDVYLAMT 179


>gi|38638464|ref|NP_943839.1| gp61 [Mycobacterium phage PG1]
 gi|109391908|ref|YP_655158.1| gp62 [Mycobacterium phage Orion]
 gi|206600352|ref|YP_002241372.1| gp62 [Mycobacterium phage Chah]
 gi|33334079|gb|AAQ12138.1| gp61 [Mycobacterium phage PG1]
 gi|88910450|gb|ABD58378.1| gp62 [Mycobacterium phage Orion]
 gi|206287440|gb|ACI12782.1| gp62 [Mycobacterium phage Chah]
 gi|282721440|gb|ADA83888.1| gp62 [Mycobacterium phage Fang]
 gi|282721543|gb|ADA83990.1| gp61 [Mycobacterium phage Scoot17C]
          Length = 619

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 22  AIAVDTETLGLMPRRDRLCIV----QLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREK 77
           A+A D ET GL       C+     Q   G     ++     +++A  LV  +       
Sbjct: 51  ALATDIETPGLDNSFTINCVTMAWAQPDSGRVHSILLDPRRDEQHA-ALVAEMYALAGPV 109

Query: 78  IFHYGRFDIAVLFYT----FGVRVRPVFCTKIASRLTRTYTNQHG----LKDNLKELLGI 129
           I H   FDI  LF+       V  + +  T + +R        +G    L       LG+
Sbjct: 110 ILHNAPFDIPPLFHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQAKTLTALAIRYLGL 169

Query: 130 N 130
           +
Sbjct: 170 S 170


>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
 gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
          Length = 917

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   RL  +  S   G    + +A    + P           L   L   
Sbjct: 343 AFDTETTSLDPMTARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDDVLARLKPWLEAA 402

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            R+K+  + ++D  VL     + +  +   T + S +  ++   H +       LG+   
Sbjct: 403 DRKKVGQHLKYDAQVLANY-DIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 460

Query: 133 KAQ 135
           K +
Sbjct: 461 KYE 463


>gi|12321950|gb|AAG51007.1|AC069474_6 hypothetical protein; 73797-74486 [Arabidopsis thaliana]
          Length = 171

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 111 RTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           R        +  ++E LG   + + +    SDWSA +L D+Q+  A+ D      L
Sbjct: 107 RRSMRGCSFEVIVEECLGYRGVRLDREISMSDWSAYELCDDQILQASIDAHVCFKL 162


>gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
 gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
          Length = 878

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 26/131 (19%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYT 114
           +       P L+ +L  EK+  +F   R+D        GVR +   F  ++A+ L     
Sbjct: 368 VPKDSAAFPALLSLLESEKQVAVFGLKRYD------QAGVRGQNDFFDIELAAYLLEPER 421

Query: 115 NQHGLKDNLKELLGINISKAQ----QSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEK 170
           +++ L +  ++ L     ++       + W A  +S                L      K
Sbjct: 422 SKYALPELSQKYLQEMAPESFADERSRAVWEAKTIS---------------RLYPLLGAK 466

Query: 171 LQRLGRSDLAT 181
           L+    + L  
Sbjct: 467 LEEEELTHLMK 477


>gi|219871037|ref|YP_002475412.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
 gi|219691241|gb|ACL32464.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
          Length = 256

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 34/123 (27%)

Query: 62  NAPNLVGMLVDEKRE--K----IFHYGRFDIAVLFYTFGVRVRP---------VFCT-KI 105
           + P    +  DE  E  K    I H   FD+  + + F     P         V  + ++
Sbjct: 76  DKPAFAEI-ADEFIEFIKGAELIIHNAPFDVGFIDHEFSFLPNPPEKVAQMCTVTDSLQL 134

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRL 165
           A ++      ++ L       LGI+ SK                L  A  D   L  + L
Sbjct: 135 ARKM--YPGKRNNLDALCDR-LGIDNSKRV--------------LHGALLDAEILADVFL 177

Query: 166 QFT 168
             T
Sbjct: 178 MMT 180


>gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1464

 Score = 35.4 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 7/66 (10%)

Query: 68  GMLVD--EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLK 120
            M  D  +    + H   FD+  +      +   +  +PV  T   +R       +HGL 
Sbjct: 496 QMFQDFCQDTVLVAHNATFDVGFMNANYERHGMPIITQPVIDTLEFARNLYPEYKRHGLG 555

Query: 121 DNLKEL 126
              K  
Sbjct: 556 PLTKRF 561


>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
 gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
          Length = 919

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75
           DTET  L P   ++  + LS   G+   I +A    +AP           L   L   +R
Sbjct: 347 DTETTSLDPMVAQIVGISLSTEPGSAAYIPVAHRGPDAPEQLPRDEVLAKLKPWLESAER 406

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
            K+  + ++D  VL     + +  +   T + S +  ++   H +       LG+   K 
Sbjct: 407 RKVGQHLKYDAQVLANY-EIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKY 464

Query: 135 Q 135
           +
Sbjct: 465 E 465


>gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1635

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 61  KNAPNLVGMLV-----DEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLT 110
           KNA  L  +L       E    + H   FD+  +          +  +PV  T   +R  
Sbjct: 653 KNAKPLYEVLTKFQKFCEGTILVAHNASFDVGFMNMNYSRNGLPIISQPVVDTLEFARNL 712

Query: 111 RTYTNQHGLKDNLKEL 126
                + GL    K+ 
Sbjct: 713 YPEMKRFGLGQLTKKF 728


>gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11]
 gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 1635

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 61  KNAPNLVGMLV-----DEKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLT 110
           KNA  L  +L       E    + H   FD+  +          +  +PV  T   +R  
Sbjct: 653 KNAKPLYEVLTKFQKFCEGTILVAHNASFDVGFMNMNYSRNGLPIISQPVVDTLEFARNL 712

Query: 111 RTYTNQHGLKDNLKEL 126
                + GL    K+ 
Sbjct: 713 YPEMKRFGLGQLTKKF 728


>gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
 gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
          Length = 1464

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 73  EKREKIFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           +    + H   FD+  +      +   +  +PV  T   +R       +HGL    K  
Sbjct: 503 QDTVLVAHNATFDVGFMNANYERHGMPIITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 561


>gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 239

 Score = 35.4 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 26/101 (25%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRP----------VFCTKIASRLTRTYTNQHGLKDNLKELL 127
           + H   FD+  + + FG+              V  T   +R       ++ L    K   
Sbjct: 87  VIHNAPFDVGFMDHEFGMEPSTKGVITNQICDVLDTLTLAR-QMHPGQKNNLDALCKRY- 144

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
              I  + ++            L  A  D   L  + L  T
Sbjct: 145 --GIDNSHRT------------LHGALLDAEILADVYLLMT 171


>gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
 gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
          Length = 885

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYT 114
           I   + N  NL  +  D+  EK+ +  + DI VL Y   + ++     + IA  L  +  
Sbjct: 354 IDYNKDNLSNLKALWEDDSIEKLGYDLKEDIIVLQYN-KIDLKNYCHDSMIAEYLLNSTE 412

Query: 115 NQHGLKDNLKELLG 128
           + + +         
Sbjct: 413 SNYEIDHLASSYFN 426


>gi|32442293|gb|AAP82217.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 102 CTKIASRLTRTYTNQ-HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            T + S L        H LK   + +  +   K      W  +  + E L Y   DV  L
Sbjct: 1   DTLVLSSLANPSLEGGHSLKAWGERIHNL---KGDYEGGW--ETFNPEMLAYCQQDVRLL 55

Query: 161 HALRLQFTEKLQ 172
             L  +   +L+
Sbjct: 56  KDLYRRLEVQLE 67


>gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
 gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
          Length = 1036

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD+  +      +   +  +PV  T   +R       +HGL    K  
Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565


>gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 885

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLTRTYT 114
           I   + N  NL  +  D+  EK+ +  + DI VL Y   + ++     + IA  L  +  
Sbjct: 354 IDYNKDNLSNLKALWEDDSIEKLGYDLKEDIIVLQYN-KIDLKNYCHDSMIAEYLLNSTE 412

Query: 115 NQHGLKDNLKELLG 128
           + + +         
Sbjct: 413 SNYEIDHLASSYFN 426


>gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 1468

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD+  +      +   +  +PV  T   +R       +HGL    K  
Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565


>gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R]
 gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316]
 gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
 gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 2603V/R]
 gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae
           NEM316]
 gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 18RS21]
          Length = 1468

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD+  +      +   +  +PV  T   +R       +HGL    K  
Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565


>gi|119194125|ref|XP_001247666.1| hypothetical protein CIMG_01437 [Coccidioides immitis RS]
          Length = 752

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 47/159 (29%), Gaps = 37/159 (23%)

Query: 6   VHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQ-- 60
           V E DI           +A+D E   T G +    R+ +V     DG V +  +   Q  
Sbjct: 330 VPEKDIQGGSLTAGRQVLALDCEMCITEGGVSELARISLV---GWDGEVVLDELVKPQRP 386

Query: 61  --------------------KNAPNLVGMLVD---EKREKIFHYGRFDIAVLFYTFGVRV 97
                                   ++   L+D    +   + H    D+  L        
Sbjct: 387 VIDYLTQYSGMTKEKLDPVTTTLSDVQKKLLDILHPRTILVGHSLNSDLTALK-----LT 441

Query: 98  RP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQ 135
            P +  T I     R    +  LK   ++ L   I K Q
Sbjct: 442 HPYIIDTAIIYPHPRGPPLKSSLKWLAQKYLSREIQKGQ 480


>gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
 gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae COH1]
          Length = 1468

 Score = 35.4 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD+  +      +   +  +PV  T   +R       +HGL    K  
Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565


>gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813]
          Length = 1468

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD+  +      +   +  +PV  T   +R       +HGL    K  
Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565


>gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 456

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 73  EKREKIFHYGRFDIAVLFYTFGVRVRPV----FCT-KIASRLTRTYTNQHGLKDNLKELL 127
           E    I H  +FD  +L   F            CT ++A +L       + L   ++  L
Sbjct: 79  EGTVLIAHNAQFDYRILRTEFRRLGFNFERKTICTVELAQKLL-PEAESYSLGKLVRS-L 136

Query: 128 GINISKAQQS 137
           GI +S   ++
Sbjct: 137 GIPVSDRHRA 146


>gi|15795164|dbj|BAB03152.1| unnamed protein product [Arabidopsis thaliana]
          Length = 210

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 111 RTYTNQHGLKDNLKELLG---INISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
           R        +  ++E LG   + + +    SDWSA +L D+Q+  A+ D      L
Sbjct: 146 RRSMRGCSFEVIVEECLGYRGVRLDREISMSDWSAYELCDDQILQASIDAHVCFKL 201


>gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
 gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
          Length = 1468

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD+  +      +   +  +PV  T   +R       +HGL    K  
Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565


>gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
 gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
          Length = 242

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 29/102 (28%)

Query: 78  IFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + H   FD++ + + F +          +  +  T + ++       ++ L    K   G
Sbjct: 99  VAHNANFDVSFMDHEFSLLQPRGPKTADICQILDTLVIAKFLHP-GQKNNLDALCKRY-G 156

Query: 129 INISKAQQSSDWSADDLSDEQLQY--AASDVVHLHALRLQFT 168
           +         D S         +Y  A  D   L  + L  T
Sbjct: 157 V---------DTSRR-------EYHGALLDAEILADVYLIMT 182


>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
 gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
          Length = 1431

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 78  IFHYGRFDIAVLF---YTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKELLGINISK 133
           + H   FDI+ +        +   P F  T   +R    +   H L    KE LG+N+  
Sbjct: 499 VAHNAEFDISFIKTNCKRLNLEFNPTFIDTMGFARAILPHLKNHKLNTLCKE-LGVNLLN 557

Query: 134 AQQSS 138
             ++S
Sbjct: 558 HHRAS 562


>gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
 gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
          Length = 913

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAP----------NLVGMLVDEKR 75
           DTET  L P   ++  + LS   G    + +A    +AP           L   L   + 
Sbjct: 341 DTETTSLDPMTAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVLARLKPWLESAEH 400

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           +K+  + ++D  VL    G+ +R +   T + S +  ++   H +       LG+   K 
Sbjct: 401 KKVGQHLKYDEQVLANY-GIEMRGIEHDTLLQSYVVESHRT-HDMDSLALRHLGVKTIKY 458

Query: 135 Q 135
           +
Sbjct: 459 E 459


>gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine
           proteobacterium]
          Length = 231

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 26/112 (23%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP------VFCTK-IASRLTRTYTN 115
           A   +  + D K   + H   FD+  L    G   RP         T  IA R  +   +
Sbjct: 74  AQEFIDFIADSKL--VIHNASFDMKFLNAELGWVNRPALPNDQTIDTLAIARR--KFPGS 129

Query: 116 QHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
              L    +      I  + ++            L  A  D   L  + L+ 
Sbjct: 130 PASLDALCRRF---GIDNSSRT------------LHGALLDSEILAEVYLEL 166


>gi|71907224|ref|YP_284811.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
 gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
          Length = 238

 Score = 35.4 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 51/186 (27%), Gaps = 58/186 (31%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLS-------------------------PGDGTVDIIRIA 57
           I +DTET GL PR     I++++                          G   V  I + 
Sbjct: 4   IVLDTETTGLDPRSGH-RIIEVACIEMVNRRFTGHHLHKYINPEREIDEGAQAVHGITL- 61

Query: 58  AGQKNAPNLVGMLVDE------KREKIFHYGRFDIAVLFYTF--------GVRVRPVFCT 103
               + P    +  DE        E I H   FDI  L            G     V  T
Sbjct: 62  EFLADKPKFADI-ADEFLEFINGAELIIHNAPFDIGFLNAELDRLGRVPVGTICNGVIDT 120

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
              ++       ++ L    +      I  + ++            L  A  D   L  +
Sbjct: 121 LRMAKELHP-GKRNSLDALCERY---EIDNSSRT------------LHGALLDTELLADV 164

Query: 164 RLQFTE 169
            L  T 
Sbjct: 165 FLAMTR 170


>gi|321450988|gb|EFX62799.1| hypothetical protein DAPPUDRAFT_269697 [Daphnia pulex]
          Length = 256

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 5/23 (21%), Positives = 10/23 (43%)

Query: 149 QLQYAASDVVHLHALRLQFTEKL 171
            + YA  D  +L  +  +  + L
Sbjct: 1   MVNYAREDTHYLIYIYERLKQDL 23


>gi|162449983|ref|YP_001612350.1| exonuclease [Sorangium cellulosum 'So ce 56']
 gi|161160565|emb|CAN91870.1| exonuclease [Sorangium cellulosum 'So ce 56']
          Length = 298

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 58/195 (29%), Gaps = 55/195 (28%)

Query: 20  VDAIAVDTETLGLMPRRDRLCIVQLSP--------GDGTVDIIRIAAG------------ 59
              + +D E  GL P  DR  ++++           D    ++R   G            
Sbjct: 31  APLVFLDLEMTGLRPESDR--VIEVCAERTRGDACEDAITSLVRPEPGVFGNAHVHGIDP 88

Query: 60  --QKNAPNLVGML-----VDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIA 106
                AP    +      V E    + H   +D+A L                +  T + 
Sbjct: 89  RELAGAPTFAELCDRIDQVTEGAVLVAHAAAWDVAFLEAELARAGRARRLPHYL-DTLVL 147

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           SR        H L    +E LG++  +A ++ D                DV  L A+  +
Sbjct: 148 SRRAFA-LPSHSLASLCRE-LGVHRERAHRAED----------------DVHALRAVFRK 189

Query: 167 FTEKLQ-RLGRSDLA 180
             E L  R  R    
Sbjct: 190 IVEVLAPRTPRDLWH 204


>gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 206

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 15/109 (13%)

Query: 46  PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-----V 100
            G     +I     +   P +   L D     + H  +FDI+ L     +  +       
Sbjct: 65  TGITNAMVIDKPYFEDIYPEVYNFLKDS--IVVAHNAKFDISFLSEVHKIVFKNNLRLHY 122

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQ 149
            CT   +R       +  L       LGIN  +           LSD Q
Sbjct: 123 ICTDNLARRIFPEIQKKSLSSLTN-YLGINFKQKH-------RALSDAQ 163


>gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909]
 gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae A909]
          Length = 1468

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 78  IFHYGRFDIAVL-----FYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD+  +      +   +  +PV  T   +R       +HGL    K  
Sbjct: 512 VAHNATFDVGFMNANYERHNLPLITQPVIDTLEFARNLYPEYKRHGLGPLTKRF 565


>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
 gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
          Length = 1433

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVL---FYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F   G+     PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGIEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
 gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
          Length = 1433

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVL---FYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F   G+     PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGIEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|303286277|ref|XP_003062428.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455945|gb|EEH53247.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 186

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 48/159 (30%), Gaps = 43/159 (27%)

Query: 20  VDAIAVDTET--LGLMPRRDRLCIVQLSPGDGTVDIIRI------------------AAG 59
            D IA+D E   +G   RR  L  V +   DG V +                     A  
Sbjct: 10  TDVIALDCEMVGVGEDGRRSILARVSVVNEDGNVVLDTFVAPTEHVTDYRTAVSGVRAQD 69

Query: 60  QKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRPVFCT----------- 103
            + AP    +   + D    R  + H  + D+  L      R      T           
Sbjct: 70  LRGAPPFKEIQRKMADILRGRILVGHALKNDLRALLLDHPRRATR--DTATYRPLTRPLR 127

Query: 104 ----KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSS 138
                 A  + R   ++  LK+     LG+ I   + SS
Sbjct: 128 SRERAQADGIARGRGSR-SLKELCARELGLEIQAGEHSS 165


>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1433

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 17/100 (17%)

Query: 53  IIRIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVL---FYTFGVR--V 97
           II +     +    AP +  +L D           + H   FD+A L   +   G+    
Sbjct: 467 IIDLTGITDDMVADAPEIHDVLKDFKAWCGNDIL-VAHNAAFDMAFLDAGYQKAGMDKAA 525

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
            PV  T    R+       + L    K+   I +    ++
Sbjct: 526 NPVIDTLEMGRMLYPTFKNYRLNTLCKKF-NIELVSHHRA 564


>gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
          Length = 661

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 6/85 (7%)

Query: 52  DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG--VRVRPVFCTKIASRL 109
               +A  +++ P+    L      K  +   F+   L    G  +      CT + +  
Sbjct: 48  LTDPLADPERDFPDFWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAAT 107

Query: 110 TRTYTNQHGLKDNLKELLGINISKA 134
                   G    + E LG+   K 
Sbjct: 108 LGLPGTLGG----VGEALGLPEDKQ 128


>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
 gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 1433

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVL---FYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F   G+     PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGIEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|302840032|ref|XP_002951572.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
 gi|300263181|gb|EFJ47383.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
          Length = 1461

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLT-- 110
           +R+               DE  +K++H   FD  VL    G+        T   +RL   
Sbjct: 748 VRLKPHHPILDEFKRFFEDESVKKVWHNYGFDRHVLEN-MGICCAGFGGDTLHMARLADA 806

Query: 111 -RTYTNQHGLKDNLKEL 126
            R+    +GL +   + 
Sbjct: 807 SRSGRRTYGLDNLTADH 823


>gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 616

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 43/155 (27%), Gaps = 36/155 (23%)

Query: 6   VHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL---CIVQLSPGDGT------VDI--- 53
               DI           + VD ET GL    DR+     V++  G+        VD    
Sbjct: 19  TFNQDIADSLIVNTT-FVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISRFSTFVDPGRL 77

Query: 54  -------------IRIAAGQKNAPNLVGMLV-DEKREKIFHYGRFDIAVLF------YTF 93
                          +    K A  +   L        + H  RFDI  L       +  
Sbjct: 78  IPPLITNITGISDDDVNGAPKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHIT 137

Query: 94  GVRVRPVFCTKIASR--LTRTYTNQHGLKDNLKEL 126
             +   + CT + +R  L R       L    +  
Sbjct: 138 WPQPTHL-CTLVLARTMLDRCAVGSFKLSSLARHF 171


>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
 gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
          Length = 1513

 Score = 35.4 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 23/133 (17%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-VRPVF---CTKIASR 108
           +I     +   P  +  + D     + H   FD++ +      + ++P F    T   +R
Sbjct: 529 VIGAPDIETVLPQFLEFIGDAAL--VAHNASFDVSFIEQNCRYQDIQPDFTSVDTVAMAR 586

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
           +     +++ L + +   L I++    +                A  D      + ++F 
Sbjct: 587 ILLPTLSKYKL-NVVANALHISLENHHR----------------AVDDAGATAEIFVKFV 629

Query: 169 EKLQRLGRSDLAT 181
           E L+  G  DLA 
Sbjct: 630 EMLKDRGIYDLAK 642


>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
 gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
          Length = 1435

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVL---FYTFGVRVR--PVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F   G+     PV  T   +R        H L    K+ L I ++
Sbjct: 502 VAHNASFDMGFINVGFKKAGIEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 560

Query: 133 KAQQS 137
           +  ++
Sbjct: 561 QHHRA 565


>gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1]
 gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga
           petrophila RKU-1]
 gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 1367

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 27/127 (21%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTK-IASRLTRTYTNQ 116
            P  +G L +     + H   FD   L       +     RP   T  +A  L +     
Sbjct: 427 LPEFLGFLENSII--VAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKM--RS 482

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           + L   +++ LG+   +  +                A  D      + L+F E ++++G 
Sbjct: 483 YSLDSVVEK-LGLGPFRHHR----------------ALDDARVTAQVFLRFVEMMKKIGI 525

Query: 177 SDLATSC 183
           + L+   
Sbjct: 526 TKLSEIE 532


>gi|332983347|ref|YP_004464788.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
 gi|332701025|gb|AEE97966.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
          Length = 657

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 16/94 (17%)

Query: 45  SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR-------- 96
              D  V +I +A+G+     ++  L DE   K  H  +F+   L      +        
Sbjct: 38  CADDDEVRVIDLASGEALPTEVLDALTDETVVKWAHNAQFERVCLSRWLERQGINLKALN 97

Query: 97  -------VRPVFCTKIASRLTRTYTNQHGLKDNL 123
                       CT + S       +  G    +
Sbjct: 98  GNSNFLNPASWRCTMVWSAYLGLPLSLEG-AALV 130


>gi|302498660|ref|XP_003011327.1| hypothetical protein ARB_02385 [Arthroderma benhamiae CBS 112371]
 gi|291174877|gb|EFE30687.1| hypothetical protein ARB_02385 [Arthroderma benhamiae CBS 112371]
          Length = 734

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 47/163 (28%), Gaps = 37/163 (22%)

Query: 6   VHEGDIPAECAARYVDAIAVDTE---TLGLMPRRDRLCIVQ----------LSPGDGTVD 52
           V + DI         D  A+D E   T G      R+ +V           + P +  +D
Sbjct: 340 VPDRDIAEGSVTAGRDIFALDCEMCITEGGKSELTRISLVSWDGERVLDEFVKPENPIID 399

Query: 53  ------------IIRIAAGQKN-APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP 99
                       +  +     +    L+ +L       I H    D+  L         P
Sbjct: 400 YLTRFSGVTKEKLDPVTTNLSDIQQKLLRILTPRSIL-IGHSLNSDLNALK-----LTHP 453

Query: 100 -VFCTKIASRLT--RTYTNQHGLKDNLKELLGINISKAQQSSD 139
            +  T  AS     R    +  LK   +  LG  I K     D
Sbjct: 454 FIVDT--ASIYPHPRGPPLKPSLKWLCQRYLGREIQKGMAGHD 494


>gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
 gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
          Length = 244

 Score = 35.4 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 24/127 (18%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG------VRVRPVFCTKIA 106
           +I +    + A  L+  L D     + H  RFD+  L                +  T   
Sbjct: 66  LIGMPKFAEVADELLDFLQDSAL--VIHNARFDMRFLEVEIERLSNKRAITNTIVDTLEM 123

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           +R  +       L    K     NIS  ++                A  D   L  + ++
Sbjct: 124 ARK-KFPGMPASLDALCKRF---NISTQERK------------FHGALKDATLLARVYVE 167

Query: 167 FTEKLQR 173
             E LQR
Sbjct: 168 LLEALQR 174


>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1511

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRVRP-VFCTKIASR 108
           ++      +  P  +          + H   FDI+ +       G+   P V  T   +R
Sbjct: 545 VLDAPKIDRVLPEFLEF--CRGAVMVAHNAGFDISFIKENARQQGLEFNPTVLDTVSLAR 602

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           +     N+  L    KE L IN++   ++ D
Sbjct: 603 VLLPNLNRFKLDTVAKE-LKINLANHHRAVD 632


>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 1438

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 61  KNAPNLVGMLV-----DEKREKIFHYGRFDIAVL---FYTFG--VRVRPVFCTKIASRLT 110
           K+AP++  +L       E    + H  RFD   +       G  +   PV  T   +R+ 
Sbjct: 481 KDAPDVEPVLKRFVEFAEDAILVAHNARFDYDFVNAKLKELGLPIMENPVLDTLELARML 540

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
                 H L     +   +++    ++ D
Sbjct: 541 FPTMKNHRLNTLAAKY-KVSLENHHRAID 568


>gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 1367

 Score = 35.4 bits (81), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 27/127 (21%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRV-----RPVFCTK-IASRLTRTYTNQ 116
            P  +G L +     + H   FD   L       +     RP   T  +A  L +     
Sbjct: 427 LPEFLGFLENSII--VAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKM--RS 482

Query: 117 HGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGR 176
           + L   +++ LG+   +  +                A  D      + L+F E ++++G 
Sbjct: 483 YSLDSVVEK-LGLGPFRHHR----------------ALDDARVTAQVFLRFVEMMKKIGI 525

Query: 177 SDLATSC 183
           + L+   
Sbjct: 526 TKLSEIE 532


>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
 gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
          Length = 1433

 Score = 35.4 bits (81), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
 gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
          Length = 242

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 29/102 (28%)

Query: 78  IFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + H   FD++ + + F +          +  +  T + ++       ++ L    K   G
Sbjct: 99  VAHNANFDVSFMDHEFSLLQPRGPKTADICQILDTLVIAKFLHP-GQKNNLDALCKRY-G 156

Query: 129 INISKAQQSSDWSADDLSDEQLQY--AASDVVHLHALRLQFT 168
           +         D S         +Y  A  D   L  + L  T
Sbjct: 157 V---------DTSRR-------EYHGALLDAEILADVYLIMT 182


>gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 1461

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 80  HYGRFDIAVL---FYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           H  RFD   L   F    +      V  T I SR+      +H L+D +   +G+     
Sbjct: 512 HNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQNKKHKLED-VATRVGVEYD-- 568

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
                         +  Y   D   L  + +   ++L + G
Sbjct: 569 ---------PTVAHRGDY---DAKVLAEVWVALMDELGKKG 597


>gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
 gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
          Length = 1461

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 80  HYGRFDIAVL---FYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           H  RFD   L   F    +      V  T I SR+      +H L+D +   +G+     
Sbjct: 512 HNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQNKKHKLED-VATRVGVEYD-- 568

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
                         +  Y   D   L  + +   ++L + G
Sbjct: 569 ---------PTVAHRGDY---DAKVLAEVWVALMDELGKKG 597


>gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1467

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 80  HYGRFDIAVL---FYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           H  RFD   L   F    +      V  T I SR+      +H L+D +   +G+     
Sbjct: 518 HNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQNKKHKLED-VATRVGVEYD-- 574

Query: 135 QQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRLG 175
                         +  Y   D   L  + +   ++L + G
Sbjct: 575 ---------PTVAHRGDY---DAKVLAEVWVALMDELGKKG 603


>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
 gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
          Length = 917

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   RL  +  S   G    + +A    + P           L   L   
Sbjct: 343 AFDTETTALDPMTARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVLARLRPWLESA 402

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            R+K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 403 DRKKVGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 460

Query: 133 KAQ 135
           K +
Sbjct: 461 KYE 463


>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
 gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
          Length = 917

 Score = 35.4 bits (81), Expect = 5.6,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   RL  +  S   G    + +A    + P           L   L   
Sbjct: 343 AFDTETTALDPMTARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVLARLRPWLESA 402

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            R+K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 403 DRKKVGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 460

Query: 133 KAQ 135
           K +
Sbjct: 461 KYE 463


>gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 719

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 58/196 (29%), Gaps = 56/196 (28%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRDRLCIVQL-------------SPGDGTVDI-IRIA 57
            A      +D + +DTET GL  R DR+  VQ+             +  + TVD  I I 
Sbjct: 10  SAAAPLIALDVVVLDTETTGLDVRHDRI--VQIGAVRMHGAEIDETAVFEVTVDPGIPIP 67

Query: 58  A------GQKNA-----PNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF------GV 95
                  G  +A     P L  ++ D          + H   FD+AVL +          
Sbjct: 68  EVASRIHGLADADVAGKPGLAAVMPDLVAFIGDAVVVGHSIHFDMAVLRHEAERHGFVWK 127

Query: 96  RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAAS 155
             R +    + +           L       LG+ I+                    A  
Sbjct: 128 EPRAL-DVALMAAGLDRELVDTSLDSLALG-LGVTITGRHT----------------ALG 169

Query: 156 DVVHLHALRLQFTEKL 171
           D +    +      KL
Sbjct: 170 DALATARVYAALQPKL 185


>gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens
           AM1]
 gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens AM1]
          Length = 297

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 38/140 (27%)

Query: 21  DAIAVDTETLGLMPRRDRLC------------------IV---QL--SPGDGTVDIIRIA 57
             +A+D ET      RD  C                  ++   QL  SPG+  V  I + 
Sbjct: 2   KVVAIDFETANER--RDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGI-LP 58

Query: 58  AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT-KIA 106
           A  ++AP    ++ +          + H   FD+ VL  +      PV      CT +IA
Sbjct: 59  ADVRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIA 118

Query: 107 SRLTRTYTNQHGLKDNLKEL 126
            R+       HGL      L
Sbjct: 119 RRVFPD-PAGHGLAKVASRL 137


>gi|183231979|ref|XP_651188.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169802250|gb|EAL45800.2| hypothetical protein EHI_064630 [Entamoeba histolytica HM-1:IMSS]
          Length = 536

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 12/140 (8%)

Query: 35  RRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG 94
            R  LCI+ ++     V ++ I   +++      +      EK+ +   F I  L+Y F 
Sbjct: 182 YRGYLCILFVAF-SHFVYVLDILKLKESFETTSLLFESTSIEKVCYKA-FGIRALYYQFK 239

Query: 95  VRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
           +    VF   +A    +     +   D  K +    I   + + +W     S   + +  
Sbjct: 240 ITTNNVFLLDVA---CQKMNICYNYADLFKTMTD-RIP--ETNDEWMIRPYSKYVICWFG 293

Query: 155 SDVVHLH----ALRLQFTEK 170
            D + L      +R +  E+
Sbjct: 294 LDTLQLLNFSIKIRNKLIEQ 313


>gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
 gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
 gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
 gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
 gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
 gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
          Length = 242

 Score = 35.4 bits (81), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 29/102 (28%)

Query: 78  IFHYGRFDIAVLFYTFGVR---------VRPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + H   FD++ + + F +          +  +  T + ++       ++ L    K   G
Sbjct: 99  VAHNANFDVSFMDHEFSLLQPRGPKTADICQILDTLVIAKFLHP-GQKNNLDALCKRY-G 156

Query: 129 INISKAQQSSDWSADDLSDEQLQY--AASDVVHLHALRLQFT 168
           +         D S         +Y  A  D   L  + L  T
Sbjct: 157 V---------DTSRR-------EYHGALLDAEILADVYLIMT 182


>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
 gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
          Length = 1421

 Score = 35.0 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYT-FGVRVRPV---FCTKIASRLT 110
            +   ++  P  +  + D     I H   FD+  +      +R+ P+     T   +R  
Sbjct: 463 DMPKIEEVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCLDLRINPIRTYIDTLAFARAL 520

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
             +   H L    K+   +N+    ++ D
Sbjct: 521 EPHLKNHKLDTLTKKY-NVNLFNHHRACD 548


>gi|302420273|ref|XP_003007967.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261353618|gb|EEY16046.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 306

 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 17/144 (11%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTN 115
                ++   L  +L   +  K F   R +   L+   GV +  V   ++   +TR+   
Sbjct: 75  FTTPGRDGRTLRSVLEGGRNTKCFWDIRSNAEALWSLCGVGLDNVMDIQLLENVTRSGDR 134

Query: 116 QH--GLKDNLKELLGINISK--------------AQQSSDWSADDLSDEQLQYAASDVVH 159
            +   L   ++  L +   +                 ++ ++   +S E + Y  + V H
Sbjct: 135 NYVQALDWCVQRDLAVEPEELRLGLRARRVVTRAGGSAAPFTERPMSPETVLYCVNRVFH 194

Query: 160 LHALRLQFTEKLQRLGRSDLATSC 183
           L AL     ++    G +      
Sbjct: 195 LPALH-ALYDENAEPGWAAWVRWE 217


>gi|46104670|ref|XP_380317.1| hypothetical protein FG00141.1 [Gibberella zeae PH-1]
          Length = 179

 Score = 35.0 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 142 ADDLSDEQLQYAASDVVHLHALRLQFTEK 170
              L  + +QY  +DV++L AL   + ++
Sbjct: 65  RRPLDAKTIQYCVNDVLYLPALYSAYAKR 93


>gi|262277819|ref|ZP_06055612.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
 gi|262224922|gb|EEY75381.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
          Length = 223

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 24/102 (23%)

Query: 78  IFHYGRFDIAVLFYTFGVRVR------PVFCTK-IASRLTRTYTNQHGLKDNLKELLGIN 130
           + H   FD+A L                +  T  IA    +    Q+ L    K      
Sbjct: 86  VIHNAEFDLAFLNKELKEVGEKQISKDNIVDTLNIARE--KFPGAQNSLDALCKRF---- 139

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQ 172
                   D S       Q   A  D   L  + ++  EK +
Sbjct: 140 ------KIDNSRR-----QKHSALLDCELLAKVYIELFEKKE 170


>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
 gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
          Length = 1433

 Score = 35.0 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 235

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 56/185 (30%), Gaps = 56/185 (30%)

Query: 23  IAVDTETLGLMPRR-DRLCIVQL----------------------SPGDGTVDII--RIA 57
           I +DTET GL PR  DR  ++++                         +     +     
Sbjct: 4   IVLDTETTGLNPRSGDR--VIEIGCVEMINRRLTGKNFHCYLNPERDSEEGALAVHGLTT 61

Query: 58  AGQKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRT 112
              ++ P    +   L D     E I H   FD+  L   F     P+F T++ S +  T
Sbjct: 62  EFLRDKPKFAAVAAELRDYISGAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQV-SGVIDT 120

Query: 113 Y--------TNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
                      ++ L           +S A ++            L  A  D   L  + 
Sbjct: 121 LVQAKEMHPGKRNSLDSLCDRY---GVSNAHRT------------LHGALLDAELLAEVY 165

Query: 165 LQFTE 169
           L  T 
Sbjct: 166 LAMTR 170


>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
 gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
 gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
          Length = 1435

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 502 VAHNASFDMGFINVGFKKAGLAKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 560

Query: 133 KAQQS 137
           +  ++
Sbjct: 561 QHHRA 565


>gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon
 gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
           pallidum SS14]
 gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 215

 Score = 35.0 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 36/150 (24%)

Query: 24  AVDTETLGLMPRRDRLCIVQL----SPGDGTV---------------DIIRIAAGQKNA- 63
           A DTET GL    DR+  +++        G +               D+ +I     +  
Sbjct: 17  AFDTETTGLKAEEDRI--IEIGAVTFDRKGIIARFSTLIFPDRAIPPDVSKINHITDDML 74

Query: 64  ---PNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLT 110
              P    ++ D     +    + H   FD+  L               V  T   ++  
Sbjct: 75  VNKPRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAELSLCKKQPLSHKVVDTYAMAQAV 134

Query: 111 RTYTNQHGLK-DNLKELLGINISKAQQSSD 139
                +H  +  NL    G+ +  A ++ D
Sbjct: 135 FPGLGRHQYRLQNLALQFGLTVHAAHRAED 164


>gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
          Length = 758

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 393 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 449

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 450 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 509

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 510 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 548


>gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
          Length = 762

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 38/160 (23%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGTVDIIR----------IAA 58
           PA    R  + +  D ET GL    D    +  V++  G   V I R          ++ 
Sbjct: 397 PANMDYRGQEYVIFDVETTGLSSVYDTIIEIGAVKMKDG---VVIDRFDKFINPHHLLSD 453

Query: 59  GQKNAPNLVGMLV----DEKREK------------IFHYGRFDIAVLFYTF-----GVRV 97
              N  ++   +V    DE                  H  +FDI  L          +  
Sbjct: 454 TTINLTSITDEMVQNADDENIVIRQFQEFYQDLPLCGHNVQFDIGFLNAALRRCNMDIIT 513

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           +PV  T   SRL      +H L    K+   + +    ++
Sbjct: 514 QPVVDTLEVSRLLHPEQTRHTLDSLAKKY-NVVLEHHHRA 552


>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1436

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 43/158 (27%), Gaps = 34/158 (21%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
           P          +  D ET GL    D    L  V++  G+                   I
Sbjct: 411 PQHVDLTEATYVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDRFERFANPHHPLSATTI 470

Query: 55  RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVR-----VRP 99
            +     +    AP +  +L D      +    + H   FD+  L               
Sbjct: 471 ELTGITDDMVQNAPEISEVLRDFHEWMGDSIL-VAHNASFDMGFLNMGLQKIGLEKAANG 529

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           V  T    R    +   H L    K+   I + +  ++
Sbjct: 530 VIDTLELGRFLYPHMKNHRLNTLAKKF-DIELVQHHRA 566


>gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus sp. Y412MC61]
 gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
 gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC61]
 gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
          Length = 909

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 22/102 (21%)

Query: 78  IFHYGRFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L       G      P   T   +R+       + L D  ++ LG+   
Sbjct: 88  VAHNVDFDLPFLQAELERAGWPPFAGPTIDTVELARIVLPTAESYKLGDLARQ-LGLRHD 146

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           +  Q                A SD      L +   ++L RL
Sbjct: 147 RPHQ----------------ADSDAEVTAKLFIALLKRLSRL 172


>gi|296119307|ref|ZP_06837875.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
           20306]
 gi|295967699|gb|EFG80956.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
           20306]
          Length = 1388

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 25/134 (18%)

Query: 56  IAAGQKNAPNLVGMLVDEKREKIFHY-GRFDIAVLFYTFGVRVRPVF------CTKIASR 108
                  A  L+ +L       + H   ++D+  L   +G+ V+ +        T + +R
Sbjct: 850 PVPTTDIAGELIPLLEKADTI-VGHNVLQYDLPALQRLYGLDVKALIKADRVRDTLVMAR 908

Query: 109 LTRTYTNQHGLK-DNLKELLGIN-------------ISKAQQSSDWSADDL-SDEQLQYA 153
           L            D +    G++             ++K     D     + +   ++YA
Sbjct: 909 LRAGGDKNLKYDLDKVASRCGVDGKLLADGETALKALAKQFGGFD--KIPVDNPNYVEYA 966

Query: 154 ASDVVHLHALRLQF 167
             DV    A+  + 
Sbjct: 967 LQDVRANVAVYEKL 980


>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
 gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLAKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
 gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLAKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
 gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|159469482|ref|XP_001692892.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277694|gb|EDP03461.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 163

 Score = 35.0 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 17/97 (17%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIVQLSPGDGTV--------DIIRIAAGQKNA---- 63
           A   V+ +AVD E + L  R  +LC++ L P    V         ++ ++     A    
Sbjct: 16  ALVGVEWLAVDAEGVSL-SRDGKLCLLALQPARLLVRTWQWLPGYLVDVSVLSTEAFSHC 74

Query: 64  ----PNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVR 96
                +L  +L      K+    R D   L++  G R
Sbjct: 75  RRRDCSLKTLLECGDVTKLLFDVRRDAEALYHQHGAR 111


>gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
 gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
          Length = 909

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 22/102 (21%)

Query: 78  IFHYGRFDIAVLFYTF---GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L       G      P   T   +R+       + L D  ++ LG++  
Sbjct: 88  VAHNVDFDLPFLQAELERAGWPPFAGPTIDTVELARIVLPTAESYKLGDLARQ-LGLHHD 146

Query: 133 KAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           +  Q                A SD      L +   ++L RL
Sbjct: 147 RPHQ----------------ADSDAEVTAKLFIALLKRLSRL 172


>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
 gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
 gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus B4264]
 gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|332978822|gb|EGK15506.1| exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           1501(2011)]
          Length = 252

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 16/49 (32%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   +D+ VL          + CTK  S       + H L   L   
Sbjct: 98  VGHNIDYDMQVLKNAGVTHTPKLICTKAMSNFLLPTLDSHTLVALLYHF 146


>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
 gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
 gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
 gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
 gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
          Length = 1435

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 502 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 560

Query: 133 KAQQS 137
           +  ++
Sbjct: 561 QHHRA 565


>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
 gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
          Length = 913

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 26  DTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDEKR 75
           DTET  L P   ++  +  +   G    + +A    +AP           L   L   K 
Sbjct: 341 DTETTSLDPMTAQIVGLSFAVEAGHAAYVPVAHRGPDAPVQLPRDEVLAKLKPWLESAKH 400

Query: 76  EKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           +K+  + ++D  VL    G+ +R +   T + S +  ++   H + +     LG+   K 
Sbjct: 401 KKVGQHLKYDEQVLANY-GIEMRGIEHDTLLQSYVLESHRP-HDMDNLALRHLGVKTIKY 458

Query: 135 Q 135
           +
Sbjct: 459 E 459


>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 382

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRP-VFCTKIASRLTRTYTNQHG 118
           AP L   L    +  + H   FD   L   F   G+   P V CT   SR       +HG
Sbjct: 83  APALYERL--NGKLFVAHNASFDRGFLRSEFRRAGLAFDPDVLCTVRLSRALFPGEKRHG 140

Query: 119 LKDNLKELLGINISKAQQSSD 139
           L   ++    +   + +  +D
Sbjct: 141 LDALVERHALVPSDRHRALAD 161


>gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 203

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 9/71 (12%)

Query: 62  NAPNLVGMLVDEKREK-----IFHYGRFDIAV----LFYTFGVRVRPVFCTKIASRLTRT 112
           +AP+   ++ D  R       + H   FD       L        +P  CT + SR    
Sbjct: 66  SAPDAATVMTDANRFVGNAPLVAHNASFDRKFWEAELSRAGERASQPFACTMLVSRRLYP 125

Query: 113 YTNQHGLKDNL 123
               H L   +
Sbjct: 126 QAPSHKLGVLV 136


>gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
 gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
          Length = 239

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 56/191 (29%), Gaps = 52/191 (27%)

Query: 18  RYVDAIAVDTETLGLMP-RRDRL----C--IVQ-LSPGDGTVDIIRIAAGQK-------- 61
           + V  + +DTET GL P   DR+    C  ++  +  G    + I               
Sbjct: 5   KGVREVVLDTETTGLDPDGGDRIIEIGCVELIDRVFTGKVFHEYINPERDIPYYATKIHG 64

Query: 62  -------NAPNLVGM------LVDEKREKIFHYGRFDIAVLFYTFGVRVR------PVFC 102
                  + P    +       V+     + H   FDI  +        +       V  
Sbjct: 65  ITIDMLKDKPKFSEIADKFLEFVNNSVL-VIHNAGFDIKFIKMELDKIQKDYDSDFQVVD 123

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T I +R  +       L    +     NIS            L D +   A  D   L  
Sbjct: 124 TLILARK-KFPGVSSTLDALCRRF---NIS------------LQDRKFHGALLDATLLGK 167

Query: 163 LRLQFTEKLQR 173
           + +Q    LQR
Sbjct: 168 VYVQLMGGLQR 178


>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
 gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTF-----GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  L   F     G    PV  T    R        H L    K+   I + 
Sbjct: 501 VAHNASFDMGFLNTGFQKMGLGEAKNPVIDTLELGRFLYPTLKNHRLNTLCKKF-DIELV 559

Query: 133 KAQQS 137
              ++
Sbjct: 560 SHHRA 564


>gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus
           asymbiotica]
          Length = 248

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 27/101 (26%)

Query: 78  IFHYGRFDIAVLFYTFGVR-----VRPVFC--T---KIASRLTRTYTNQHGLKDNLKELL 127
           I H   FDI  + Y FG           FC  T   ++A  L      ++ L        
Sbjct: 96  IIHNAPFDIGFMDYEFGKLNRDIPPTTDFCKVTDSLQLARAL--FPGKRNNLDALCDRY- 152

Query: 128 GINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             +I  +Q++            L  A  D   L  + L  T
Sbjct: 153 --DIDNSQRT------------LHGALLDAEILADVYLIMT 179


>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
 gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
          Length = 1433

 Score = 35.0 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
 gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
          Length = 1435

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 502 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 560

Query: 133 KAQQS 137
           +  ++
Sbjct: 561 QHHRA 565


>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
 gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
          Length = 917

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   RL  +  S   G    + +A    + P           L   L   
Sbjct: 343 AFDTETTALDPMTARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDDVLARLKPWLESA 402

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            R+K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LG+   
Sbjct: 403 DRKKVGQHLKYDAQVLANY-GIALNGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTI 460

Query: 133 KAQ 135
           K +
Sbjct: 461 KYE 463


>gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149]
 gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149]
          Length = 465

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 45/154 (29%), Gaps = 39/154 (25%)

Query: 13  AECAARYVDAIAVDTETLGLMPRRDRLCIVQLS--------------------------P 46
            +   R +  +  D+ET GL P  D   +VQL                           P
Sbjct: 264 DQTRLRDLTFVVFDSETTGLDPHTDE--VVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPP 321

Query: 47  GDGTVD-----IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG----VRV 97
           G   V      ++  A G   A        +     + H   FD+A L            
Sbjct: 322 GSTAVHQINDAMVADAPGFDVACRAFHQFAEHAVI-VAHNAPFDMAFLRRQCRNQDYAFD 380

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            PV  T   S +    + +H L       L ++I
Sbjct: 381 NPVLDTVHLSAVVFGGSAEHTLDALCNR-LNVHI 413


>gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 392

 Score = 35.0 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 43/136 (31%), Gaps = 29/136 (21%)

Query: 20  VDAIAVDTETLGL---MPRRDRLCIVQL-----SPGDGTVDI---IRIAAGQKN------ 62
           V  + VD ET G      R   + +V++     S     VD    I     Q        
Sbjct: 13  VPIVFVDLETTGGSVGDHRITEVGVVEVGPNGVSSWTTLVDPGQPIPPFIQQLTGITNDM 72

Query: 63  ---APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLT 110
              AP    +  D     + +  I H   FD   L   F   G    P V CT   SR  
Sbjct: 73  VRGAPTFEAIAADLFARLDGKLFIAHNASFDRGFLRSEFQRAGFAFNPDVLCTVRLSRAL 132

Query: 111 RTYTNQHGLKDNLKEL 126
                +HGL   ++  
Sbjct: 133 FPAEKRHGLDALVERH 148


>gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 244

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRP---------VFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           I H   FD+  L     +             V  T + +R  R    ++ L    K L  
Sbjct: 87  IIHNAAFDLGFLDNELSLLGDNYGRIVERATVVDTLMMAR-ERYPGQRNSLDALCKRL-- 143

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             +  + +            QL  A  D   L  + +  T
Sbjct: 144 -GVDNSHR------------QLHGALLDAQILADVYIALT 170


>gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
 gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
          Length = 891

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 68  GMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKDNLKEL 126
             L D  R K  H  +  I  L    G  +R +   T++A+ L +     + L D +   
Sbjct: 371 AWLEDASRPKAMHDAKGPIEALAAR-GWILRGLTSDTQLAAYLVKPDQRTYHLDDLVLRH 429

Query: 127 LGINIS 132
           L   +S
Sbjct: 430 LRRELS 435


>gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI
           454]
 gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 247

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 26/115 (22%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTKIASRLTRTYT 114
           A  L   + D     I H   FDI  L   F +   P        V  T + ++      
Sbjct: 74  ADALRDFVKDADI--IIHNAPFDIGFLNAEFAMLGLPPFCDHCGEVIDTLVQAK-AMFPG 130

Query: 115 NQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTE 169
            ++ L    +      IS A ++            L  A  D   L  + L  T 
Sbjct: 131 KRNSLDALCERF---GISNAHRT------------LHGALLDAELLADVYLAMTR 170


>gi|150015899|ref|YP_001308153.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902364|gb|ABR33197.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 209

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 15/66 (22%)

Query: 44  LSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVRVR 98
           LS G    D++          + +          I H   FD+  L +           +
Sbjct: 65  LSDGQYFEDLVPEFLEDFMTADFL----------IGHNVNFDVRFLKHELLSLGEDFYPK 114

Query: 99  PVFCTK 104
            VFCT 
Sbjct: 115 NVFCTM 120


>gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 234

 Score = 35.0 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 56/185 (30%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP-------------------------GDGTVDIIRIA 57
           I +DTET GL P +    I++++                          G   V  I + 
Sbjct: 4   IFLDTETTGLYPAQGH-RIIEIAAVEVINRRITSQHYHVYLNPDREIDAGAQEVHGITLE 62

Query: 58  AGQKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTK 104
             Q + P    +    +D  +  E I H   FD+  L    G   +P        +  T 
Sbjct: 63  FLQ-DKPRFADVVGEFLDFVQDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGIIDTL 121

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
             ++  R    ++ L    +   GI+ SK                L  A  D   L  + 
Sbjct: 122 KMAKEMRP-GQRNNLDALCRHF-GIDNSKRT--------------LHGALLDAELLADVY 165

Query: 165 LQFTE 169
           L  T 
Sbjct: 166 LAMTR 170


>gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
 gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
          Length = 254

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 27/125 (21%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT---- 103
           ++        AP  +  +     E + H   FDI  ++Y F +  + +     FCT    
Sbjct: 73  LLDKPTFADIAPEFIEFIR--GAELVIHNATFDIGFMYYEFRMLQQAIPNTDTFCTITDS 130

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHAL 163
            + +R       ++ L       L   I   +++            L  A  D   L  +
Sbjct: 131 LLMARRL-FPGKRNNLDALCDRYL---IDNTKRT------------LHGALLDAEILSEV 174

Query: 164 RLQFT 168
            L  T
Sbjct: 175 YLAMT 179


>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 1435

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGVRV-----RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K+ L I ++
Sbjct: 502 VAHNASFDMGFINVGFKKAGLEKTNNPVIDTLELARFLFPEMKNHRLNTMCKK-LDIELT 560

Query: 133 KAQQS 137
           +  ++
Sbjct: 561 QHHRA 565


>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1436

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 43/158 (27%), Gaps = 34/158 (21%)

Query: 12  PAECAARYVDAIAVDTETLGLMPRRD---RLCIVQLSPGDGT--------------VDII 54
           P          +  D ET GL    D    L  V++  G+                   I
Sbjct: 411 PQHVDLTEATYVVFDVETTGLSAVYDTIIELAAVKMKEGEIIDRFERFANPHHPLSATTI 470

Query: 55  RIAAGQKN----APNLVGMLVD------EKREKIFHYGRFDIAVLFYTFGVR-----VRP 99
            +     +    AP +  +L D      +    + H   FD+  L               
Sbjct: 471 ELTGITDDMVQNAPEISEVLRDFHEWMGDSIL-VAHNASFDMGFLNMGLQKIGLEKAANG 529

Query: 100 VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQS 137
           V  T    R    +   H L    K+   I + +  ++
Sbjct: 530 VIDTLELGRFLYPHMKNHRLNTLAKKF-DIELVQHHRA 566


>gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH]
          Length = 379

 Score = 35.0 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQ 116
             AP L+  L  + +  + H   FD   L   F   GV   P V CT   SR      ++
Sbjct: 81  DIAPALLERL--DGKLFVAHNASFDRGFLRAEFERAGVAFNPDVLCTVRLSRALFPRESR 138

Query: 117 HGLKDNLKEL 126
           HGL   ++  
Sbjct: 139 HGLDALIERH 148


>gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 383

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 33  MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89
            P++     +Q   G     +      +  AP L   L    +  + H   FD   L   
Sbjct: 53  DPQQPIPSFIQQLTGITNAMVRGAPTFEAIAPALFERL--NGKLFVAHNASFDRGFLRGE 110

Query: 90  FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           F   G+   P V CT   SR       +HGL   ++    +   + +  +D
Sbjct: 111 FRRVGLAFDPDVLCTVRLSRALFPAEKRHGLDALVERHTLVPSDRHRALAD 161


>gi|156122488|gb|ABU50235.1| DNA polymerase [Synechococcus phage S-CBP42]
          Length = 588

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 73/210 (34%), Gaps = 45/210 (21%)

Query: 23  IAVDTETLGLMPRRDRL-CIVQLSPGDGTVDIIRIAAGQKNAPNLVG---MLVDEKREKI 78
           +A D ET GL+    ++ CIV     D   + +    G  + P++     +L D      
Sbjct: 3   LAFDIETDGLLRNLTKIHCIV---AQDLDTNEVYKFDGTGDHPSIREGLALLKDADELW- 58

Query: 79  FHYG-RFDIAVLFYTF--GVRVRPVFCTKIASRL-----------------TRTYTNQHG 118
            H    +D   +   F        V+ T I SRL                       +H 
Sbjct: 59  GHNIIGYDFEAIKEVFPRWNYSSTVYDTLILSRLFFTDLLDRDFRSRPANMPAQLYGRHS 118

Query: 119 LKDNLKELLGINISKAQ-QSS---DWSADDLSDEQLQYAASDVVHLHALRLQFTEKLQRL 174
           L+     L   ++ K++   S   DWS    S E L Y A DVV   +L   FT K+   
Sbjct: 119 LEAWGHRL---SVHKSEFGKSLSGDWST--YSPEMLDYCARDVVVSVSLARLFTAKVAE- 172

Query: 175 GRSDLATSCCNFLMDRAELDLLGWENVDIF 204
                   C +     A   ++ W+  + F
Sbjct: 173 -----YRDCISTEHRLAT--IMAWQESEGF 195


>gi|126342543|ref|XP_001368220.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 838

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 217 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCSMGTGSDF 271

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 272 DVRVLPPSQLE 282


>gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 466

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 77  KIF--HYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGIN 130
           KIF  H  RFD   +  +F   G+  +P V CT   SRL      +H L   +    G+ 
Sbjct: 89  KIFVAHNARFDYGFIKASFKRVGIDFKPKVLCTVKLSRLLFPEQPRHNLDTIINAH-GLQ 147

Query: 131 ISKAQQS 137
           +S   ++
Sbjct: 148 VSARHRA 154


>gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4]
 gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264]
          Length = 379

 Score = 35.0 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 61  KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQ 116
             AP L+  L  + +  + H   FD   L   F   GV   P V CT   SR      ++
Sbjct: 81  DIAPALLERL--DGKLFVAHNASFDRGFLRAEFERAGVAFNPDVLCTVRLSRALFPRESR 138

Query: 117 HGLKDNLKEL 126
           HGL   ++  
Sbjct: 139 HGLDALIERH 148


>gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2]
 gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2]
          Length = 1463

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 60  QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRV------RPVFCTKIASR 108
            K+AP +  ++ D          + H   FDI  +   +   +       PV  T    R
Sbjct: 481 LKDAPEVEEVIRDFKEWVGDHTLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLELGR 540

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQS 137
                   H L    K+   I +++  ++
Sbjct: 541 FLYPEFKNHRLNTLCKKF-DIELTQHHRA 568


>gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 383

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 33  MPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL--- 89
            P++     +Q   G     +         AP L   L    +  + H   FD   L   
Sbjct: 53  DPQQPIPSFIQQLTGITNAMVRGAPTFDVIAPELFKRL--NGKLFVAHNASFDRGFLRGE 110

Query: 90  FYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
           F   G+   P V CT   SR       +HGL   ++    +   + +  +D
Sbjct: 111 FRRVGLAFDPDVLCTVRLSRALFPAEKRHGLDALVERHALVPSDRHRALAD 161


>gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 234

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 56/185 (30%)

Query: 23  IAVDTETLGLMPRRDRLCIVQLSP-------------------------GDGTVDIIRIA 57
           I +DTET GL P +    I++++                          G   V  I + 
Sbjct: 4   IFLDTETTGLYPAQGH-RIIEIAAVEVINRRITSQHYHVYLNPDREIDAGAQEVHGITLE 62

Query: 58  AGQKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRP--------VFCTK 104
             Q + P    +    +D  +  E I H   FD+  L    G   +P        +  T 
Sbjct: 63  FLQ-DKPRFADVVGEFLDFVQDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGIIDTL 121

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
             ++  R    ++ L    +   GI+ SK                L  A  D   L  + 
Sbjct: 122 KMAKEMRP-GQRNNLDALCRHF-GIDNSKRT--------------LHGALLDAELLADVY 165

Query: 165 LQFTE 169
           L  T 
Sbjct: 166 LAMTR 170


>gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 254

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 58/187 (31%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQL---------SPGDGTVDIIRIAAGQK--------- 61
           I +DTET G+       +  CI+++           G+     I+               
Sbjct: 11  IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPEAIKVHGI 70

Query: 62  ------NAPNLVGMLVDEKREKI------FHYGRFDIAVLFYTFGVRVRPV--------F 101
                 + P+   +  +E  E I       H   FD+  + Y F     P+         
Sbjct: 71  TDEMLADKPDFSQI-ANEFIEYIKGAELLIHNAPFDVGFMDYEFRKLNLPIKTNDICTVT 129

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
            T + +R       ++ L      L   +I  ++++            L  A  D   L 
Sbjct: 130 DTLVMAR-QMYPGKKNNLDALCSRL---DIDNSKRT------------LHGALLDAEILA 173

Query: 162 ALRLQFT 168
            + L  T
Sbjct: 174 DVYLAMT 180


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score = 35.0 bits (80), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 17/148 (11%)

Query: 63  APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKIASRLTRTYTNQHGLKD 121
             +L  +   E  E + H  + D  V     G+  +  +  T I + L     + + L+ 
Sbjct: 347 LEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDLER 405

Query: 122 NLKELLGINI---------SKAQQSSDWSADDLSDE-QLQYAASDVVHLHALRLQFTEKL 171
            LK  L ++I          K ++      +++S+E   +Y      HL  L+ +    +
Sbjct: 406 VLKRYLKVDILSHEEVFGKGKDRRRY----EEVSEEVMAEYICGRCSHLFELKDKLMAFI 461

Query: 172 QRLGRSDLATS-CCNFLMDRAELDLLGW 198
           + +    L        +     +++ G+
Sbjct: 462 EEMDMKKLLLEIEMPLVEVLKSMEVDGF 489


>gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
          Length = 886

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 17/100 (17%)

Query: 88  VLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWS-----A 142
           V+ +   +  R +   ++   L  +    HGL    +  LG ++       D       A
Sbjct: 400 VMEHAVPLEPRALVDLEVLGWLVDSADVAHGLDQLARRWLGRHLD------DRGPLEAEA 453

Query: 143 DDLSDEQLQYAASDVVHLHALRLQFTEKLQRLGRSDLATS 182
             L   Q       V  +H +R     +L       LAT 
Sbjct: 454 APLGARQW------VEVVHPIREALERRLTEDDLWRLATD 487


>gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
           14580]
 gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580]
          Length = 1438

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 60  QKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRV------RPVFCTKIASR 108
            K+AP +  ++ D          + H   FDI  +   +   +       PV  T    R
Sbjct: 481 LKDAPEVEEVIRDFKEWVGDHTLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTLELGR 540

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQS 137
                   H L    K+   I +++  ++
Sbjct: 541 FLYPEFKNHRLNTLCKKF-DIELTQHHRA 568


>gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|31563219|sp|Q9CPE0|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon
 gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 253

 Score = 35.0 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 54/191 (28%), Gaps = 56/191 (29%)

Query: 18  RYVDAIAVDTETLGLM---PRRDRLCIVQLSP------------------GDGTVDIIRI 56
           +    I +DTET G+       +  CI+++                     +  VD   I
Sbjct: 6   QPTRQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDAI 65

Query: 57  ------AAGQKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVRVRPV----- 100
                      + P    +    +D  +  E + H   FD+  + Y F      +     
Sbjct: 66  KVHGITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDAI 125

Query: 101 ---FCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
                T   +R       ++ L       LGI+ SK                L  A  D 
Sbjct: 126 CMVTDTLQMAR-QMYPGKRNSLDALCDR-LGIDNSKRT--------------LHGALLDA 169

Query: 158 VHLHALRLQFT 168
             L  + L  T
Sbjct: 170 EILADVYLTMT 180


>gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299]
 gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299]
          Length = 972

 Score = 35.0 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 3/79 (3%)

Query: 47  GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIA 106
               + +  ++ G +              +K++H   FD  V+             T   
Sbjct: 246 PKTLLWVDTMSLGDEGWKIFKPYFESPDVKKVWHNYGFDRHVIENHGVKLAGFAADTMHM 305

Query: 107 SRL---TRTYTNQHGLKDN 122
           +RL    R     + L+  
Sbjct: 306 ARLWNSNRKLEGGYSLEAL 324


>gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 247

 Score = 35.0 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVLFY-------TFGVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           I H   FD+  L Y         G  V    V  T + +R  R    ++ L    K L  
Sbjct: 87  IIHNAAFDLGFLDYELSRCGAHLGRIVDRCSVVDTLLLAR-ERYPGQRNSLDALCKRL-- 143

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             +  + +            QL  A  D   L  + +  T
Sbjct: 144 -GVDNSHR------------QLHGALLDAQILADVYIALT 170


>gi|195174216|ref|XP_002027875.1| GL18050 [Drosophila persimilis]
 gi|194115556|gb|EDW37599.1| GL18050 [Drosophila persimilis]
          Length = 284

 Score = 35.0 bits (80), Expect = 7.0,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 11/144 (7%)

Query: 34  PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
             R    +V ++  + T  +  I A     P L  +L  +   K+ HY       LFY  
Sbjct: 78  RHRPVAVLV-VATANQT-YVFDIQALGAFFPELKKLLEAKYPRKVVHYSHRISDQLFYKH 135

Query: 94  GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK---------AQQSSDWSADD 144
            +++     T +A  + R   +   L + +  +L I + +         ++    ++A  
Sbjct: 136 QIKLTGFSDTFVALCVARQDKSACSLPEAISSVLNIPLRELLCDEVTGVSESRQLFTARP 195

Query: 145 LSDEQLQYAASDVVHLHALRLQFT 168
           LS +Q ++     +  H +  + T
Sbjct: 196 LSGDQFRFLGRMAILQHQMHDRLT 219


>gi|332666585|ref|YP_004449373.1| TonB-dependent receptor plug [Haliscomenobacter hydrossis DSM 1100]
 gi|332335399|gb|AEE52500.1| TonB-dependent receptor plug [Haliscomenobacter hydrossis DSM 1100]
          Length = 1026

 Score = 35.0 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 12/79 (15%)

Query: 29  TLGLMPRR---DRLCIVQL--SPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGR 83
            +GL            VQ   S GDG +D        K  P+L G L +      F++GR
Sbjct: 817 FIGLR-YTGVDPETGDVQFEDSNGDGIIDYDDAQIIGKAMPDLFGGLTNS-----FNFGR 870

Query: 84  FDIAVLFY-TFGVRVRPVF 101
           FD+ V    + G +V  + 
Sbjct: 871 FDLTVFTRFSIGNQVYNLI 889


>gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1442

 Score = 35.0 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 8/90 (8%)

Query: 55  RIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRL 109
                 +  P  +  + D     + H  +FD   L             +PV  T   +R 
Sbjct: 491 DAPPIAEVLPKFIDFVGDA--VLVAHNAQFDTGFLRANMEKILNRTLAQPVLDTLGLARG 548

Query: 110 TRTYTNQHGLKDNLKELLGINISKAQQSSD 139
                  H LK   KE   + +    ++ D
Sbjct: 549 LFPDMKNHKLKTLAKEF-NVKLENHHRAVD 577


>gi|159127404|gb|EDP52519.1| RNA exonuclease Rex3, putative [Aspergillus fumigatus A1163]
          Length = 645

 Score = 35.0 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 46  PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105
            GDG    +++      A  L+   +      I H    D+        +    +  T +
Sbjct: 493 TGDGA---LQVVESPAAARALLFKFLQPDTPLIGHAIDNDLNACRI---IHPT-IIDTVL 545

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI-SKAQQSSD 139
                R    + GLK  +K+ L  +I +K  Q  D
Sbjct: 546 LYPHPRGLPIRMGLKALVKKYLDRDIQTKGSQGHD 580


>gi|70999342|ref|XP_754390.1| RNA exonuclease Rex3 [Aspergillus fumigatus Af293]
 gi|74674483|sp|Q4WYA1|REXO3_ASPFU RecName: Full=RNA exonuclease 3
 gi|66852027|gb|EAL92352.1| RNA exonuclease Rex3, putative [Aspergillus fumigatus Af293]
          Length = 645

 Score = 35.0 bits (80), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 46  PGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKI 105
            GDG    +++      A  L+   +      I H    D+        +    +  T +
Sbjct: 493 TGDGA---LQVVESPAAARALLFKFLQPDTPLIGHAIDNDLNACRI---IHPT-IIDTVL 545

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI-SKAQQSSD 139
                R    + GLK  +K+ L  +I +K  Q  D
Sbjct: 546 LYPHPRGLPIRMGLKALVKKYLDRDIQTKGSQGHD 580


>gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 253

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 57/204 (27%), Gaps = 61/204 (29%)

Query: 23  IAVDTETLGLM---PRRDRLCIVQL---------SPGDGTVDIIRIAAGQK--------- 61
           I +DTET G+       +  CI+++           G+     I+               
Sbjct: 11  IVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPEAIKVHGI 70

Query: 62  ------NAPNLVGMLVDEKREKI------FHYGRFDIAVLFYTFGVRVRPV--------F 101
                 + P+   +  +E  E I       H   FD+  + Y F     P+         
Sbjct: 71  TDEMLADKPDFSQI-ANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICQVT 129

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLH 161
            T   +R       ++ L       LGI+ SK                L  A  D   L 
Sbjct: 130 DTLTMAR-QMYPGKKNNLDALCSR-LGIDNSKRT--------------LHGALLDAEILA 173

Query: 162 ALRLQF---TEKLQRLGRSDLATS 182
            + L        L     S++   
Sbjct: 174 DVYLAMTGGQTSLFDENESEIIQQ 197


>gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c]
 gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c]
          Length = 239

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVLFYTF-------GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           I H   FD+  L Y         G       V  T + +R  R    ++ L    K L  
Sbjct: 91  IIHNAAFDLGFLDYELSRLGSQYGKITDRASVLDTLVMAR-ERYPGQRNSLDALCKRL-- 147

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             +  A +            QL  A  D   L  + +  T
Sbjct: 148 -GVDNAHR------------QLHGALLDAQILADVYIALT 174


>gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12]
 gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 239

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVLFYTF-------GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           I H   FD+  L Y         G       V  T + +R  R    ++ L    K L  
Sbjct: 91  IIHNAAFDLGFLDYELSRLGSQYGKITDRASVLDTLVMAR-ERYPGQRNSLDALCKRL-- 147

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             +  A +            QL  A  D   L  + +  T
Sbjct: 148 -GVDNAHR------------QLHGALLDAQILADVYIALT 174


>gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1]
 gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23]
 gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1]
 gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23]
 gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 239

 Score = 35.0 bits (80), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVLFYTF-------GVRV--RPVFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           I H   FD+  L Y         G       V  T + +R  R    ++ L    K L  
Sbjct: 91  IIHNAAFDLGFLDYELSRLGSQYGKITDRASVLDTLVMAR-ERYPGQRNSLDALCKRL-- 147

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
             +  A +            QL  A  D   L  + +  T
Sbjct: 148 -GVDNAHR------------QLHGALLDAQILADVYIALT 174


>gi|298244072|ref|ZP_06967878.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551553|gb|EFH85418.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 1009

 Score = 35.0 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 68/220 (30%), Gaps = 55/220 (25%)

Query: 16  AARYVDAIAVDTETLGLMPRRDRLCIV-----Q-----------LSPGDGTVDIIRIAAG 59
           A +    IA+D ET GL   +D +  V     Q           +SPG      ++   G
Sbjct: 2   AKKSAIRIALDLETTGLHAEQDAILEVAAIKFQGSEVLDTFETFISPGRSIPYRVQRLTG 61

Query: 60  QK-----NAPNLVGM-------LVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIAS 107
            K      AP    +       L D     + H   FD+  L         P+  T   +
Sbjct: 62  IKPELLVGAPPFDAISRQLHTFLGDYPI--VGHSIPFDVGFLRRWGLAHSNPMVDTFELA 119

Query: 108 RLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
            +     + + L   +   LGI +      SD             A  D V    + L  
Sbjct: 120 TVLLPSLSSYNLGQ-VAHSLGIQVP-----SD-RHR---------AMVDTVLAMQVFLSL 163

Query: 168 TEKLQRLGRSDLATSCCNFLMDRAELDL-LGWENVDIFSH 206
            E+LQ        T     L D A LD    W  +  F H
Sbjct: 164 YERLQ--------TVDLALLQDLARLDAPRSWPLLHFFRH 195


>gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
 gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
          Length = 1439

 Score = 35.0 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 23/125 (18%)

Query: 53  IIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP----VFCTKIASR 108
           ++     Q   P  +          + H   FD++ +      +  P       T   +R
Sbjct: 472 VMDAPDIQTILPQFLE-FCAGAVM-VAHNADFDMSFIIENCKRQGLPQEYTYVDTVGMAR 529

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                 N+  L   + + +G+++    +                A  D      + ++F 
Sbjct: 530 FLLPALNRFKLDT-VAKAVGVSLDHHHR----------------AVDDAACTAEIFVRFV 572

Query: 169 EKLQR 173
           E L+ 
Sbjct: 573 EMLKE 577


>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
 gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
          Length = 1449

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRT 112
               +  P  +  + D     + H   FD+  +             PV  T   +R    
Sbjct: 498 PTIDEVLPKFMEFVGDS--VLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLYP 555

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139
              +  L + + + LGI++    ++ D
Sbjct: 556 DLKKVKL-NLVAKHLGISLENHHRAVD 581


>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
 gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
          Length = 1449

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRT 112
               +  P  +  + D     + H   FD+  +             PV  T   +R    
Sbjct: 498 PTIDEVLPKFMEFVGDS--VLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLYP 555

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139
              +  L + + + LGI++    ++ D
Sbjct: 556 DLKKVKL-NLVAKHLGISLENHHRAVD 581


>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
 gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
          Length = 1449

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRT 112
               +  P  +  + D     + H   FD+  +             PV  T   +R    
Sbjct: 498 PTIDEVLPKFMEFVGDS--VLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLYP 555

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139
              +  L + + + LGI++    ++ D
Sbjct: 556 DLKKVKL-NLVAKHLGISLENHHRAVD 581


>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
 gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
 gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens ATCC 13124]
 gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
          Length = 1449

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF----GVRVRPVFCTKIASRLTRT 112
               +  P  +  + D     + H   FD+  +             PV  T   +R    
Sbjct: 498 PTIDEVLPKFMEFVGDS--VLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLYP 555

Query: 113 YTNQHGLKDNLKELLGINISKAQQSSD 139
              +  L + + + LGI++    ++ D
Sbjct: 556 DLKKVKL-NLVAKHLGISLENHHRAVD 581


>gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614]
 gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614]
          Length = 889

 Score = 35.0 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 44  LSPGDGTVDIIRIAAGQ-KNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-F 101
           L+  DG    +        +   L G L D KR K+ H  +  +  L   +G+ +  +  
Sbjct: 347 LATTDGLAAWVAADQLDVADQTALAGWLADPKRPKVLHDAKGPMLAL-AAWGLPLAGLDR 405

Query: 102 CTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            T +++ L R     + L D     L   +
Sbjct: 406 DTALSAYLARPDQRSYDLADLTVRYLKREL 435


>gi|32442295|gb|AAP82218.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score = 34.6 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 102 CTKIASRL-TRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHL 160
            T + S L   +    H L +    +LG    K    +DWS    S E  +Y   DV  L
Sbjct: 1   DTLVLSSLACPSRAGGHSLDNW-GSILGFP--KGD-HTDWST--YSPEMREYCKRDVGLL 54

Query: 161 HALRLQFTEKLQ 172
             + L   E+L+
Sbjct: 55  EKVVLALDEELK 66


>gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 33/122 (27%), Gaps = 29/122 (23%)

Query: 60  QKNAPNLVGM---LVD--EKREKIFHYGRFDIAVLFYTFGVR--------VRPVFCTKIA 106
             + P    +    ++  +    + H   FDI  +     +            +  T   
Sbjct: 71  LLDKPIFKDIADSFLNYIKNSILVIHNASFDIGFINQELEILNKKIKINTFCSIIDTLKM 130

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           +R       ++ L           I+K+ ++            L  A  D   L  L L 
Sbjct: 131 ARKL-FPGKKNTLDALCTRY---KINKSHRN------------LHSAIVDSYLLGKLYLL 174

Query: 167 FT 168
            T
Sbjct: 175 MT 176


>gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
 gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
          Length = 212

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 8/86 (9%)

Query: 52  DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCTKIA 106
           D++           +   L  E    + H   FD++VL    G     V      CT +A
Sbjct: 64  DVVDAPEFPDIWDAMRPEL--EGAVLLAHNASFDMSVLRAMLGTYGLAVPDHGYLCTLVA 121

Query: 107 SRLTRTYTNQHGLKDNLKELLGINIS 132
           +R       +H L    ++  GI + 
Sbjct: 122 ARRAWPDLEKHRLNHLARQF-GIELE 146


>gi|198467545|ref|XP_002134564.1| GA22370 [Drosophila pseudoobscura pseudoobscura]
 gi|198149295|gb|EDY73191.1| GA22370 [Drosophila pseudoobscura pseudoobscura]
          Length = 284

 Score = 34.6 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 11/144 (7%)

Query: 34  PRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF 93
             R    +V ++  + T  +  I A     P L  +L  +   K+ HY       LFY  
Sbjct: 78  RHRPVAVLV-VATANQT-YVFDIQALGAFFPELKKLLEAKYPRKVVHYSHRISDQLFYKH 135

Query: 94  GVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISK---------AQQSSDWSADD 144
            + +     T +A  + R   +   L + +  +L I + +         ++    ++A  
Sbjct: 136 QITLTGFSDTFVALCVARQDKSACSLPEAISSVLNIPLRELLSDEVTGVSESRQLFTARP 195

Query: 145 LSDEQLQYAASDVVHLHALRLQFT 168
           LS +Q ++     +  H +  + T
Sbjct: 196 LSGDQFRFLGRMAILQHQMHDRLT 219


>gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
 gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
          Length = 896

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 37/152 (24%)

Query: 66  LVGMLVDEKREKIFHYGR--FDIAVLFYTFGVRVRP-VFCTKIASRLTRTYTNQHGLKDN 122
              +  ++   KI        DI  L    G++++  +F  KIA  +       H L   
Sbjct: 376 FQAIFENKN--KILISADVKNDIIWLKRA-GIKLKNDIFDIKIAHYVLHP-DISHDLGRV 431

Query: 123 LKELLGINI--SKAQQSSDWSADDLSDEQL-------------QYAAS-DVVHLHALRLQ 166
             E L   +  SK +           D+QL              +A   DV+    L  +
Sbjct: 432 ALEYLNYKLSGSKKE-----------DQQLTLQFDEEAGTEDNDFAEKTDVIF--QLHEK 478

Query: 167 FTEKLQRLGRSDLATS-CCNFLMDRAELDLLG 197
             + LQ+ G   L  +     +   A+++  G
Sbjct: 479 LCDDLQQTGLLALYNNIEMPLVFVLADMEYEG 510


>gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
 gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
          Length = 253

 Score = 34.6 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 35/122 (28%), Gaps = 32/122 (26%)

Query: 62  NAPNLVGMLVDEKRE------KIFHYGRFDIAVLFYTF-----GVRVRPVFCT----KIA 106
           + P    +  DE  E       + H   FDI  + Y F     G+     FCT     + 
Sbjct: 75  DKPVFADI-ADEFIEFIRGAELVIHNAPFDIGFMDYEFRKLNRGIPPTAEFCTITDSLVL 133

Query: 107 SRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQ 166
           +R       ++ L       L           D S   L       A  D   L  + L 
Sbjct: 134 ARKI-FPGKRNNLDALCDRYL----------IDNSKRTL-----HGALLDAEILSDVYLA 177

Query: 167 FT 168
            T
Sbjct: 178 MT 179


>gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 484

 Score = 34.6 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 28/146 (19%)

Query: 47  GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGV----RVRPVFC 102
           GD TV      +    A  L+ +L       + H  +FD   L   F         P  C
Sbjct: 97  GDETVAGAPPFSA--LAHELLPLLR--GCILLAHNSKFDYTFLRRAFARCGLPFAAPTLC 152

Query: 103 TKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHA 162
           T   SR       +H L+  ++   GI  +   +++D                DV    A
Sbjct: 153 TVQLSRRLYPQFYKHSLESIIERH-GIAAASRHRATD----------------DV---LA 192

Query: 163 LRLQFTEKLQRLGRSDLATSCCNFLM 188
           +       L+  G    A   C+ L 
Sbjct: 193 VADYLETALREQGSETFAAHACHLLQ 218


>gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
 gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
          Length = 655

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 15/97 (15%)

Query: 49  GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF----------GVR-V 97
           G ++++ +A GQ     ++  LVD    K  H   F+   L              G    
Sbjct: 42  GPIEVVDLANGQSIPDEVLAALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGP 101

Query: 98  RPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKA 134
           R   CT I S           L   +  +L +++ K 
Sbjct: 102 RQWRCTMIWSAYLGLP---MSLDA-VATVLKLDVQKD 134


>gi|258575311|ref|XP_002541837.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237902103|gb|EEP76504.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 720

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 8/89 (8%)

Query: 53  IIRIAAGQKN-APNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-VFCTKIASRLT 110
           +  +     +    L+ +L       + H    D++ L         P +  T I     
Sbjct: 398 LDPVTTTLSDIQKRLLNILTPRSIL-VGHSLNSDLSALK-----LTHPFIIDTAIIYPHP 451

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSD 139
           R    +  LK   ++ LG  I K Q   D
Sbjct: 452 RGSPLKSSLKWLSQKYLGREIQKGQTGHD 480


>gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91]
          Length = 346

 Score = 34.6 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 78  IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD   L   F   G+   P V CT   SR      ++HGL   ++  
Sbjct: 96  VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148


>gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702]
          Length = 901

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 49  GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF---GVRVRPVF-CTK 104
             VDI        +   L   L D    K  H    D    ++     G+ +  V   T 
Sbjct: 382 HAVDIDLTDQDPADEATLRAWLADRGAPKWVH----DAKAEWHKLNGSGLVLAGVEQDTA 437

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINI 131
           +A+ L R       L D ++  +G  I
Sbjct: 438 LAAYLLRPDLRTGDLADVVQRHVGHEI 464


>gi|68299732|ref|YP_249581.1| DNA polymerase [Vibriophage VP4]
 gi|66473271|gb|AAY46280.1| DNA polymerase [Vibriophage VP4]
          Length = 678

 Score = 34.6 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 29/117 (24%)

Query: 78  IFHYG-RFDIAVLFY----TFGVRV----RPVFCTKIASRLT------------------ 110
           +FH G ++D   L       FG  +    + V  T + SRL                   
Sbjct: 59  VFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDAGLLRSGRIT 118

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                 H LK     L  +     +Q + W   + ++  + Y   DV     L  +F
Sbjct: 119 GKLYGSHSLKAWGMRLGELKGDYGEQEAAWI--EFNEPMMDYCKQDVQVTLKLFEKF 173


>gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 239

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 49/185 (26%), Gaps = 56/185 (30%)

Query: 23  IAVDTETLGLMPRR-DRLCIVQLS------------------PGDGTVDIIRI------A 57
           I +DTET GL P   DR+  ++++                    D       +       
Sbjct: 5   IVLDTETTGLNPASGDRI--IEVAGVELFNRRLTGKHYHAYLNPDRASHPDALKVHGLTE 62

Query: 58  AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPVF--------CTK 104
               + P    +  D        E I H   FD A L        RP F         T 
Sbjct: 63  EFLSDKPRFEQIADDLLEFVRDAEVIIHNAPFDCAFLDAELERLNRPAFRQHVPLVTDT- 121

Query: 105 IASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR 164
           +A    +     + L    K      I    ++            L  A  D   L  + 
Sbjct: 122 LAMAKLQFPGKFNNLDALCKRF---GIDNTHRT------------LHGALLDAELLAEVY 166

Query: 165 LQFTE 169
           L  T 
Sbjct: 167 LSLTR 171


>gi|114655299|ref|XP_001156164.1| PREDICTED: hypothetical protein, partial [Pan troglodytes]
          Length = 42

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 115 NQHGLKDNLKELLGINISKA--QQSSDWSADDLSDEQ 149
           N   LK   + +L   + K+   + S+W A+ L+++Q
Sbjct: 6   NGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQ 42


>gi|81428523|ref|YP_395523.1| ATP-dependent helicase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610165|emb|CAI55214.1| Putative ATP-dependent helicase, DinG family [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 944

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 24/123 (19%)

Query: 57  AAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVL---FYTFGVRVRPV--FCTKIASRLTR 111
              +  AP LV +L       + H   FD+  L       G++   +    T   +++  
Sbjct: 71  PIFEDLAPTLVEILS--GTVFVAHNINFDLPFLNGELTRVGLQPLDLAGIDTVELAQIIL 128

Query: 112 TYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFTEKL 171
                + L+D  + LL I      Q                A SD +    L L+ + +L
Sbjct: 129 PEAPSYRLQDLTQ-LLEIEHDNPHQ----------------ADSDALVTAKLFLKLSARL 171

Query: 172 QRL 174
           Q L
Sbjct: 172 QAL 174


>gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
 gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
 gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
 gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
          Length = 242

 Score = 34.6 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 29/102 (28%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRP---------VFCTKIASRLTRTYTNQHGLKDNLKELLG 128
           + H   FD++ + + F +             +  T   ++       ++ L    K   G
Sbjct: 99  VAHNANFDVSFMDHEFSMLPSKGPKTMDICDILDTLEIAKFLHP-GQKNNLDALCKRY-G 156

Query: 129 INISKAQQSSDWSADDLSDEQLQY--AASDVVHLHALRLQFT 168
           I         D S          Y  A  D   L  + L  T
Sbjct: 157 I---------DNSRR-------HYHGALLDAEILADVYLIMT 182


>gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 896

 Score = 34.6 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 101 FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           F T +A+ L       H L D +  +LGI +S
Sbjct: 404 FDTMLAAYLAHPDQRSHKLTDVVARILGIEVS 435


>gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383]
 gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383]
          Length = 917

 Score = 34.6 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   RL  +  S   G    + +A    + P           L   L   
Sbjct: 343 AFDTETTSLDPMLARLVGLSFSVESGKAAYLPVAHRGPDMPEQLPLDEVLARLKPWLESA 402

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            R+K+  + ++D  VL     + +  +   T + S +  ++   H +       LG+   
Sbjct: 403 DRKKVGQHLKYDAQVLANY-DIALNGIEHDTLLESYVVESHRT-HDMDSLALRHLGVKTI 460

Query: 133 KAQ 135
           K +
Sbjct: 461 KYE 463


>gi|110739343|dbj|BAF01584.1| hypothetical protein [Arabidopsis thaliana]
          Length = 377

 Score = 34.6 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 6/30 (20%), Positives = 12/30 (40%)

Query: 149 QLQYAASDVVHLHALRLQFTEKLQRLGRSD 178
             +YA  D  +L  +      +L  + + D
Sbjct: 1   MKRYAREDTHYLLYIYDVMRMELHTMAKED 30


>gi|74008599|ref|XP_852947.1| PREDICTED: similar to slit and trk like 4 protein isoform 2 [Canis
           familiaris]
          Length = 867

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 245 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 299

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 300 DVRVLPPSQLE 310


>gi|74008597|ref|XP_549303.2| PREDICTED: similar to slit and trk like 4 protein isoform 1 [Canis
           familiaris]
          Length = 838

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRVLPPSQLE 281


>gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88]
 gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88]
          Length = 882

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 66  LVGMLVDEKREKIFHYGRFDIAVLFYTFGVR----VRPVFCTKIASRLTRTYTNQHGLKD 121
           L  +   E    + H    D+ VL            + +F  KIA+ L  +  + + L  
Sbjct: 382 LKTIFEKEAVRVVSH----DVKVLSMALKKLDVEFTKALFDLKIAAYLIDSSKSDYDLST 437

Query: 122 NLKELL 127
            ++E L
Sbjct: 438 LIQECL 443


>gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
 gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
          Length = 231

 Score = 34.6 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 24/97 (24%)

Query: 78  IFHYGRFDIAVLFYTFGVRVRP------VFCT-KIASRLTRTYTNQHGLKDNLKELLGIN 130
           I H   FD+  L    G    P         T +IA R  R   +   L    +     N
Sbjct: 87  IIHNAAFDMKFLNAELGWMGLPQIPWEQAIDTLEIARR--RFPGSPASLDALCRRF---N 141

Query: 131 ISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
           I  + ++            L  A  D   L  + L+ 
Sbjct: 142 IDNSSRT------------LHGALLDSEILAEVYLEL 166


>gi|329851645|ref|ZP_08266402.1| coA-transferase family III family protein [Asticcacaulis
           biprosthecum C19]
 gi|328840491|gb|EGF90063.1| coA-transferase family III family protein [Asticcacaulis
           biprosthecum C19]
          Length = 402

 Score = 34.6 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 11/78 (14%)

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALR- 164
           A+        Q  L   ++E    +++K     DW +D       +YA  D   L     
Sbjct: 237 AALFEAGDGRQISLG-VVQENQFKSLAKHIGREDWLSDP------RYATPD---LRRAHA 286

Query: 165 LQFTEKLQRLGRSDLATS 182
                +L    R+  A  
Sbjct: 287 QALQAELAEALRTKPAAQ 304


>gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 481

 Score = 34.6 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 50/160 (31%), Gaps = 39/160 (24%)

Query: 1   MTTIRVHEGDIPAECAARYVDAIAVDTETLGLMPRRDRL------------------CIV 42
           M  + V +  + A  A        +D ET G    RDR+                  C++
Sbjct: 1   MNAVEVADR-LRAFIAQLGQPLACLDIETTGSHTERDRITEIGIVTLHPDGTQSNWSCLI 59

Query: 43  QLSPGDGTVDIIRIAAGQ-------KNAPNLV----GMLVD-EKREKIFHYGRFDIAVLF 90
                 G     RI            + P        +L   E    I H  RFD+  L 
Sbjct: 60  ----HPGCAIPARITTLTGITNEMVADQPVFAHRAQALLERLENHIVIAHNARFDLGFLK 115

Query: 91  YTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
             F   G+R  P V C+   SR       +H L   ++ +
Sbjct: 116 QAFRREGIRFNPSVLCSVKLSRQMFPAERRHNLDSVMQRM 155


>gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score = 34.6 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 41/151 (27%)

Query: 47  GDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFY-TFGVRVRPVFCTKI 105
           G+G V +    A      +L   L D      FH   FD  VL +    + +     +  
Sbjct: 44  GEGPVQVWDCTATATLPDDLSAALHDPAVLLYFHNSHFDRTVLRHCGIDIPLERWRDSM- 102

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI----SKAQQS------------------------ 137
           A  L  +     G    L ELL + +     K  +                         
Sbjct: 103 AQALAHSLPGALG---TLCELLRVPVEHAKDKDGKRLVALFCKPRPAHCTLRRATRDTHP 159

Query: 138 SDWSADDLSDEQ-LQYAASDVVHLHALRLQF 167
           +DW        Q ++YA  DV  +  +  + 
Sbjct: 160 TDW-------AQFVEYAQRDVAAMRDVVKRL 183


>gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402]
 gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 850

 Score = 34.6 bits (79), Expect = 8.9,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 49  GTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTF-----GVRVRPVFCT 103
              D++        A +++ +L  +    + H  +FD+  L   F       + R +  T
Sbjct: 60  DAFDLVDAPNFSHVASHIIKLL--DGCVFVAHNVQFDLRFLQKYFSEAGHKFQPRYIIDT 117

Query: 104 KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSD 139
               ++      ++ LK    + LGI +S A ++ D
Sbjct: 118 VDWFKIVYPSLERYQLKSIADD-LGIELSSAHRAID 152


>gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243]
 gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243]
          Length = 381

 Score = 34.6 bits (79), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 78  IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD   L   F   G+   P V CT   SR      ++HGL   ++  
Sbjct: 96  VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148


>gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1]
          Length = 597

 Score = 34.6 bits (79), Expect = 8.9,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 20/125 (16%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-- 99
           VQ+  G     +          P+            + H  RFDI  L   +     P  
Sbjct: 79  VQVLTGITDAMVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWG 136

Query: 100 ---VFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
              +  T   +R  L+R     + L    +      +S        S   L+D +   A 
Sbjct: 137 DPTLVDTLALARSVLSRGEVRNYKLSTLSQLFRTTTMS--------SHRALADAR---AT 185

Query: 155 SDVVH 159
            DV+H
Sbjct: 186 VDVLH 190


>gi|281416182|ref|YP_003347917.1| DNA polymerase [Vibrio phage N4]
 gi|237701489|gb|ACR16482.1| DNA polymerase [Vibrio phage N4]
          Length = 678

 Score = 34.6 bits (79), Expect = 8.9,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 37/117 (31%), Gaps = 29/117 (24%)

Query: 78  IFHYG-RFDIAVLFY----TFGVRV----RPVFCTKIASRLT------------------ 110
           +FH G ++D   L       FG  +    R V  T + SRL                   
Sbjct: 59  VFHNGIKYDYPALKKLKKLYFGKNLNIPKRNVLDTLVMSRLLHSNLKDTDAGLLRSGRIT 118

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                 H LK     L  +     +Q + W   + ++  + Y   DV     L  +F
Sbjct: 119 GKLYGSHSLKAWGMRLGELKGDYGEQEAAWI--EFNEPMMDYCKQDVQVTLKLFEKF 173


>gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2]
 gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3]
 gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium sp. P08]
          Length = 598

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 20/125 (16%)

Query: 42  VQLSPGDGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP-- 99
           VQ+  G     +          P+            + H  RFDI  L   +     P  
Sbjct: 80  VQVLTGITDAMVRPAPPLSAVLPSWSEF--SRSTVLVAHNARFDIGFLKRAYAQHNYPWG 137

Query: 100 ---VFCTKIASR--LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAA 154
              +  T   +R  L+R     + L    +      +S        S   L+D +   A 
Sbjct: 138 DPTLVDTLALARSVLSRGEVRNYKLSTLSQLFRTTTMS--------SHRALADAR---AT 186

Query: 155 SDVVH 159
            DV+H
Sbjct: 187 VDVLH 191


>gi|311105570|ref|YP_003978423.1| nitric oxide reductase large subunit [Achromobacter xylosoxidans
           A8]
 gi|310760259|gb|ADP15708.1| nitric oxide reductase large subunit [Achromobacter xylosoxidans
           A8]
          Length = 761

 Score = 34.6 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 12/66 (18%)

Query: 137 SSDWSADDLSDEQL----------QYAASDVVHLHALRLQFTEKLQRLGRSDLATSCCNF 186
           ++DW   +L+   L           YA  D     ALR     +  R  RSD AT     
Sbjct: 84  TADWLHRELT-AWLDLAAREQHGQDYAQLDARAQAALRADLKAE-YRANRSDAATDTLTV 141

Query: 187 LMDRAE 192
              RA 
Sbjct: 142 SPRRAR 147


>gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
          Length = 950

 Score = 34.6 bits (79), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 31/81 (38%)

Query: 58  AGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQH 117
             +  A  L  +L +  +  + H  +    +L         P+F TK+A  L     +  
Sbjct: 412 IDRDMASQLQTLLDEYHQSMVVHGYKEQSHLLGSAGVKLPEPLFDTKLAGYLVHPDFHAD 471

Query: 118 GLKDNLKELLGINISKAQQSS 138
            L+      L +++ +  +S+
Sbjct: 472 TLEQAAAHFLDLHVEEQSESA 492


>gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
          Length = 952

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 48  DGTVDIIRIAAGQKNAPN-LVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVF-CTKI 105
           DG    I +A     + N L G L D +  K+ H  +  +  L    G+ +  V   T I
Sbjct: 413 DGAAAYIDLAGQDAESENVLAGWLRDPESPKVLHGFKAALKALTSR-GLELEGVVDDTSI 471

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINI 131
           +  L +     + L +  +  L + I
Sbjct: 472 SGYLIQPDRRTYELAELAQHHLNVGI 497


>gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 247

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 56/196 (28%), Gaps = 66/196 (33%)

Query: 20  VDAIAVDTETLGLMPRR-DRL-------------------------CIVQLSPGDGTVDI 53
              I +DTET G  PR  DRL                          ++         D 
Sbjct: 2   AREIVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLI-------PADA 54

Query: 54  IRIAAGQKN----APNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV---- 100
           IR+     +    AP    ++VD          I H  +FD   + +  G    P+    
Sbjct: 55  IRVHGITDDKVKDAPKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHET 114

Query: 101 --FCT-KIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDV 157
               T ++A +  R     + L    K        K           L D  L  A  D 
Sbjct: 115 RWIDTLQLAQK--RFPGMANSLDALCKRY------KIS---------LVDRTLHGALIDA 157

Query: 158 VHLHALRLQFTEKLQR 173
             L  + L+     +R
Sbjct: 158 RLLAEVYLELKGGKER 173


>gi|325171294|ref|YP_004251265.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512000|gb|ADX87462.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512146|gb|ADX87605.1| DNA polymerase [Vibrio phage ICP3_2008_A]
 gi|323512194|gb|ADX87652.1| DNA polymerase [Vibrio phage ICP3_2007_A]
          Length = 678

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 29/117 (24%)

Query: 78  IFHYG-RFDIAVLFY----TFGVRV----RPVFCTKIASRLT------------------ 110
           +FH G ++D   L       FG  +    + V  T + SRL                   
Sbjct: 59  VFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDAGLLRSGRIT 118

Query: 111 RTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQF 167
                 H LK     L  +     +Q + W   + ++  + Y   DV     L  +F
Sbjct: 119 GKLYGSHSLKAWGMRLGELKGDYGEQEAAWV--EFNEPMMDYCKQDVQVTLKLFEKF 173


>gi|159475990|ref|XP_001696097.1| hypothetical protein CHLREDRAFT_192202 [Chlamydomonas reinhardtii]
 gi|158275268|gb|EDP01046.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 999

 Score = 34.6 bits (79), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 141 SADDLSDEQLQYAASDVVHLHALRLQFTEK 170
               LS  QL+ AA    HL  L     ++
Sbjct: 925 LTRPLSPSQLEVAARAARHLPELWAALVQE 954


>gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC
           13177]
          Length = 349

 Score = 34.6 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 78  IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD   L   F   G+   P V CT   SR      ++HGL   ++  
Sbjct: 96  VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148


>gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1]
 gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1]
          Length = 234

 Score = 34.6 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 12/66 (18%)

Query: 78  IFHYGRFDIAVLFYTFG------VRVRPVFCT-KIASRLTRTYTNQHGLKDNLKELLGIN 130
           + H   FD   L +  G      V +  +  T +IA ++      +H L           
Sbjct: 87  VAHNASFDFGFLNWELGACGRSIVDMGRMVDTLQIARKM--HPGAKHSLDALCSRY---G 141

Query: 131 ISKAQQ 136
           I ++ +
Sbjct: 142 IDRSHR 147


>gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 417

 Score = 34.6 bits (79), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 52  DIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPV------FCTKI 105
           DI+   A +  A  LV +L  E R  + H   FD+  L          +       CT  
Sbjct: 64  DIVDAPAFEHIAGQLVDLL--EGRVLVAHNASFDLKFLVAELERTAAWMSTDFVSLCTM- 120

Query: 106 ASRLTRTYTNQHG--LKDNLKELLGINISKAQQSS 138
             +L R Y    G  L D     L I +  A ++S
Sbjct: 121 --QLAREYLPGAGRALAD-CCAALDIQLDDAHRAS 152


>gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
 gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
          Length = 247

 Score = 34.6 bits (79), Expect = 9.4,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 25/100 (25%)

Query: 78  IFHYGRFDIAVLFYTF-----GVRVRPVFCT----KIASRLTRTYTNQHGLKDNLKELLG 128
           + H   FDI  + Y F     G+     FCT     + +R       ++ L       L 
Sbjct: 96  VIHNAPFDIGFMDYEFRKLNKGIPPTQDFCTITDSLVLARKL-FPGKRNNLDALCDRYL- 153

Query: 129 INISKAQQSSDWSADDLSDEQLQYAASDVVHLHALRLQFT 168
                     D S   L       A  D   L  + L  T
Sbjct: 154 ---------IDNSKRTL-----HGALLDAEILSDVYLAMT 179


>gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
 gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
          Length = 616

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 6/80 (7%)

Query: 51  VDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLF---YTFGVRV-RPVFCTKIA 106
           V +      ++  P       D     + H   FD+  +       G+R  +PV  T + 
Sbjct: 482 VLLQDKPPIEEVLPRFYRFARDT--VLVGHNVAFDLKFIRQKEKALGLRFDQPVLDTMLL 539

Query: 107 SRLTRTYTNQHGLKDNLKEL 126
           + +       +GL +     
Sbjct: 540 AAVVDPERQHYGLDELAAAF 559


>gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
 gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
          Length = 297

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 38/140 (27%)

Query: 21  DAIAVDTETLGLMPRRDRLC------------------IV---QL--SPGDGTVDIIRIA 57
             +A+D ET      RD  C                  ++   QL  SPG+  V  I + 
Sbjct: 2   KVVAIDFETANER--RDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGI-LP 58

Query: 58  AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT-KIA 106
           A  ++AP    ++ +          + H   FD+ VL  +      PV      CT +IA
Sbjct: 59  ADVRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIA 118

Query: 107 SRLTRTYTNQHGLKDNLKEL 126
            R+       HGL      L
Sbjct: 119 RRVFPD-PAGHGLAKVAGRL 137


>gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
 gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
          Length = 736

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 24  AVDTETLGLMPRRDRLCIVQLSPGDGTVDIIRIAAGQKNAPN----------LVGMLVDE 73
           A DTET  L P   RL  +  S   G    + +A    + P           L   L   
Sbjct: 346 AFDTETTALDPMVARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVLARLKPWLESA 405

Query: 74  KREKIFHYGRFDIAVLFYTFGVRVRPV-FCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
            R K+  + ++D  VL    G+ +  +   T + S +  ++   H +       LGI   
Sbjct: 406 DRRKVGQHLKYDAQVLANY-GIELNGIEHDTLLESYVLESHRT-HDMDSLALRHLGIKTI 463

Query: 133 KAQ 135
           K +
Sbjct: 464 KYE 466


>gi|318041263|ref|ZP_07973219.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp.
           CB0101]
          Length = 304

 Score = 34.6 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 32/105 (30%)

Query: 25  VDTETLGLMPRRDR---LC-----------IVQLS-------PGDGTVDIIRIAAGQKNA 63
           +DTET GL P+RDR   L            + Q+S            V+ I     Q+  
Sbjct: 78  LDTETTGLDPQRDRCIELGAVLFDVPRRSVLSQVSLLLPCEQNPAQAVNGIDPRLTQQPQ 137

Query: 64  P------NLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRPVFC 102
           P          +L       + H   FD       FG+   P   
Sbjct: 138 PWQQGLQWFEALLAASDVV-VAHNAAFD----RQWFGIAPLPAID 177


>gi|332245412|ref|XP_003271856.1| PREDICTED: SLIT and NTRK-like protein 4 isoform 1 [Nomascus
           leucogenys]
 gi|332245414|ref|XP_003271857.1| PREDICTED: SLIT and NTRK-like protein 4 isoform 2 [Nomascus
           leucogenys]
          Length = 837

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|311277072|ref|XP_003135482.1| PREDICTED: SLIT and NTRK-like protein 4-like [Sus scrofa]
 gi|311277077|ref|XP_003135484.1| PREDICTED: SLIT and NTRK-like protein 4-like [Sus scrofa]
          Length = 838

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|297711227|ref|XP_002832252.1| PREDICTED: SLIT and NTRK-like protein 4-like isoform 1 [Pongo
           abelii]
 gi|297711229|ref|XP_002832253.1| PREDICTED: SLIT and NTRK-like protein 4-like isoform 2 [Pongo
           abelii]
 gi|297711231|ref|XP_002832254.1| PREDICTED: SLIT and NTRK-like protein 4-like isoform 3 [Pongo
           abelii]
          Length = 837

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|296236592|ref|XP_002763394.1| PREDICTED: SLIT and NTRK-like protein 4 isoform 1 [Callithrix
           jacchus]
 gi|296236594|ref|XP_002763395.1| PREDICTED: SLIT and NTRK-like protein 4 isoform 2 [Callithrix
           jacchus]
          Length = 837

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|291408551|ref|XP_002720577.1| PREDICTED: SLIT and NTRK-like family, member 4-like [Oryctolagus
           cuniculus]
          Length = 837

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|301775378|ref|XP_002923110.1| PREDICTED: SLIT and NTRK-like protein 4-like [Ailuropoda
           melanoleuca]
 gi|281341910|gb|EFB17494.1| hypothetical protein PANDA_012193 [Ailuropoda melanoleuca]
          Length = 838

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|189054675|dbj|BAG37525.1| unnamed protein product [Homo sapiens]
          Length = 837

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894]
          Length = 350

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 78  IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD   L   F   G+   P V CT   SR      ++HGL   ++  
Sbjct: 96  VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148


>gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
 gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
          Length = 658

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 34/162 (20%)

Query: 48  DGTVDIIRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKI 105
           D  V I+ +A G+K   N+   L D    K      F+   +   +     P    CT +
Sbjct: 45  DEPVQIVDLANGEKLPSNVFYALTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMV 104

Query: 106 ASRLTRTYTNQHGLKDNLKELLGINISKAQ-----------------QSSDWSA-DDLSD 147
            + LT    +     D + + L     K +                   ++     +L +
Sbjct: 105 KA-LTLGLPSSL---DMVGKALKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPE 160

Query: 148 -EQ------LQYAASDVVHLHALRLQFTE---KLQRLGRSDL 179
            +        +Y   DV     +R        K++      L
Sbjct: 161 HDMEKWETFKEYCKRDVEVEREIRNLLNRYETKVEEQKLWQL 202


>gi|149755313|ref|XP_001490259.1| PREDICTED: SLIT and NTRK-like family, member 4 [Equus caballus]
          Length = 838

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|157818931|ref|NP_001100417.1| hypothetical protein LOC302473 [Rattus norvegicus]
 gi|149031165|gb|EDL86185.1| rCG49911, isoform CRA_a [Rattus norvegicus]
 gi|149031166|gb|EDL86186.1| rCG49911, isoform CRA_a [Rattus norvegicus]
          Length = 836

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|109132520|ref|XP_001086080.1| PREDICTED: SLIT and NTRK-like family, member 4 isoform 1 [Macaca
           mulatta]
 gi|109132522|ref|XP_001086196.1| PREDICTED: SLIT and NTRK-like family, member 4 isoform 2 [Macaca
           mulatta]
 gi|109132524|ref|XP_001086308.1| PREDICTED: SLIT and NTRK-like family, member 4 isoform 3 [Macaca
           mulatta]
          Length = 837

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|76658759|ref|XP_609417.2| PREDICTED: slit homolog 3-like [Bos taurus]
 gi|297492548|ref|XP_002699658.1| PREDICTED: slit homolog 3-like [Bos taurus]
 gi|296471187|gb|DAA13302.1| slit homolog 3-like [Bos taurus]
          Length = 837

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|19584403|emb|CAD28493.1| hypothetical protein [Homo sapiens]
          Length = 689

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 68  NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 122

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 123 DVRILPPSQLE 133


>gi|27436867|ref|NP_775101.1| SLIT and NTRK-like protein 4 precursor [Homo sapiens]
 gi|296080773|ref|NP_001171678.1| SLIT and NTRK-like protein 4 precursor [Homo sapiens]
 gi|296080775|ref|NP_001171679.1| SLIT and NTRK-like protein 4 precursor [Homo sapiens]
 gi|46396931|sp|Q8IW52|SLIK4_HUMAN RecName: Full=SLIT and NTRK-like protein 4; Flags: Precursor
 gi|26454889|gb|AAH40986.1| SLIT and NTRK-like family, member 4 [Homo sapiens]
 gi|57208500|emb|CAI41650.1| novel protein [Homo sapiens]
 gi|119598426|gb|EAW78020.1| SLIT and NTRK-like family, member 4 [Homo sapiens]
 gi|325463689|gb|ADZ15615.1| SLIT and NTRK-like family, member 4 [synthetic construct]
          Length = 837

 Score = 34.6 bits (79), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 81  YGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINISKAQQSSDW 140
               D+  L          ++   I   +  T ++ +G    LKE     +      SD+
Sbjct: 216 NCSCDLLPLKAWLENMPYNIY---IGEAICETPSDLYG--RLLKETNKQELCPMGTGSDF 270

Query: 141 SADDLSDEQLQ 151
               L   QL+
Sbjct: 271 DVRILPPSQLE 281


>gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
 gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
          Length = 891

 Score = 34.6 bits (79), Expect = 9.7,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 4/115 (3%)

Query: 19  YVDAIAVDTETLGLMPRRD-RLCIVQLSPGDGTVDIIRIAAGQ-KNAPNLVGMLVDEKRE 76
             D + +  E  G     D R   + ++  DG    + +      +   + G L D +R 
Sbjct: 327 GADPVGL--EVDGDTTPTDARARALAIATADGHAAWVGVDTLDADDEAAIAGWLADAERP 384

Query: 77  KIFHYGRFDIAVLFYTFGVRVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINI 131
            + H  +  +  L          V  T IA+ L R     + L D     L   +
Sbjct: 385 VVLHDAKGQLHALAAQGWTVRGLVADTAIATYLVRPDQRAYDLADLSVRYLHREL 439


>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
 gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
 gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH187]
 gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
          Length = 1433

 Score = 34.6 bits (79), Expect = 9.7,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K++  I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 1433

 Score = 34.2 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K++  I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9]
 gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis
           HLHK9]
          Length = 493

 Score = 34.2 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 50/164 (30%), Gaps = 41/164 (25%)

Query: 21  DAIAVDTETLGLMPRRDRL---CIVQLS------------------------PGDGTVDI 53
             + VD ET G    RDR+    +V++S                         G     +
Sbjct: 5   PYVIVDLETTGGHITRDRITEIGLVEVSHGVTTRWSQLVNPGQPIPPFIEEMTGISDAMV 64

Query: 54  IRIAAGQKNAPNLVGMLVDEKREKIFHYGRFDIAVLFYTFG-----VRVRPVFCTKIASR 108
                  + AP L+  L    +  I H  RFD   L   F          P+ CT   SR
Sbjct: 65  AEAPPFAELAPALLARL--NGKLLIAHNARFDYGFLKNEFRRLGLTFTTDPL-CTVKLSR 121

Query: 109 LTRTYTNQHGLKDNLKELLGINISKAQQSSDWSADDLSDEQLQY 152
                  +H L   +    GI++    +        L D +  Y
Sbjct: 122 RLYPQHAKHSLDSLIARH-GIDVPPGMR-----HRALGDAEAVY 159


>gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215]
          Length = 346

 Score = 34.2 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 78  IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD   L   F   G+   P V CT   SR      ++HGL   ++  
Sbjct: 96  VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148


>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147]
          Length = 405

 Score = 34.2 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 78  IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD   L   F   G    P V CT   SR+     ++HGL   +   
Sbjct: 96  VAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRVLFPRESRHGLDALIARH 148


>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1433

 Score = 34.2 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K++  I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 970

 Score = 34.2 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K++  I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4]
 gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens DM4]
          Length = 297

 Score = 34.2 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 38/140 (27%)

Query: 21  DAIAVDTETLGLMPRRDRLC------------------IV---QL--SPGDGTVDIIRIA 57
             +A+D ET      RD  C                  ++   QL  SPG+  V  I + 
Sbjct: 2   KVVAIDFETANER--RDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGI-LP 58

Query: 58  AGQKNAPNLVGMLVD-----EKREKIFHYGRFDIAVLFYTFGVRVRPV-----FCT-KIA 106
           A  ++AP    ++ +          + H   FD+ VL  +      PV      CT +IA
Sbjct: 59  ADVRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIA 118

Query: 107 SRLTRTYTNQHGLKDNLKEL 126
            R+       HGL      L
Sbjct: 119 RRVFPD-PAGHGLAKVAGRL 137


>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
 gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1433

 Score = 34.2 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K++  I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


>gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210]
          Length = 348

 Score = 34.2 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 78  IFHYGRFDIAVLFYTF---GVRVRP-VFCTKIASRLTRTYTNQHGLKDNLKEL 126
           + H   FD   L   F   G+   P V CT   SR      ++HGL   ++  
Sbjct: 96  VAHNASFDRGFLRAEFERAGIAFNPDVLCTVRLSRALFPRESRHGLDALIERH 148


>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 1433

 Score = 34.2 bits (78), Expect = 10.0,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 78  IFHYGRFDIAVLFYTFGV-----RVRPVFCTKIASRLTRTYTNQHGLKDNLKELLGINIS 132
           + H   FD+  +   F          PV  T   +R        H L    K++  I ++
Sbjct: 500 VAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELARFLFPEMKNHRLNTLCKKM-DIELT 558

Query: 133 KAQQS 137
           +  ++
Sbjct: 559 QHHRA 563


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.315    0.183    0.627 

Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,131,725,505
Number of Sequences: 14124377
Number of extensions: 278673016
Number of successful extensions: 577930
Number of sequences better than 10.0: 5376
Number of HSP's better than 10.0 without gapping: 3848
Number of HSP's successfully gapped in prelim test: 3302
Number of HSP's that attempted gapping in prelim test: 564248
Number of HSP's gapped (non-prelim): 8276
length of query: 207
length of database: 4,842,793,630
effective HSP length: 133
effective length of query: 74
effective length of database: 2,964,251,489
effective search space: 219354610186
effective search space used: 219354610186
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 79 (34.6 bits)